From 2b2f6237095da17ca44cfd069f46334a62739b7d Mon Sep 17 00:00:00 2001
From: Jonathan Robinson <jonathan.robins1@gmail.com>
Date: Tue, 18 Oct 2022 09:49:25 +0200
Subject: [PATCH] chore: new version

---
 README.md              |      2 +-
 model/Fruitfly-GEM.mat |    Bin 2181813 -> 671151 bytes
 model/Fruitfly-GEM.xml | 207602 +++++++++++++++++++-------------------
 model/Fruitfly-GEM.yml |   4426 +-
 model/dependencies.txt |      4 +-
 model/metabolites.tsv  |     20 +-
 model/reactions.tsv    |    152 +-
 version.txt            |      2 +-
 8 files changed, 105282 insertions(+), 106926 deletions(-)

diff --git a/README.md b/README.md
index d78827a..8932b55 100644
--- a/README.md
+++ b/README.md
@@ -35,7 +35,7 @@ This repository contains the latest version of Fruitfly-GEM, a fruit fly genome-
 
 |Taxonomy | Template Model | Reactions | Metabolites| Genes |
 | ------------- |:-------------:|:-------------:|:-------------:|:-----:|
-|_Drosophila melanogaster_ |   Human-GEM |  12038  | 8117 | 1810 |
+|_Drosophila melanogaster_ |   Human-GEM |  11996  | 8121 | 1810 |
 
 
 ## Installation
diff --git a/model/Fruitfly-GEM.mat b/model/Fruitfly-GEM.mat
index 6c67108866879882cf5be2e2122109e56c1e2217..6258e3945411ae04646bdc498e531e2d64ba9c80 100644
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diff --git a/model/Fruitfly-GEM.xml b/model/Fruitfly-GEM.xml
index 182f11b..f0bb103 100644
--- a/model/Fruitfly-GEM.xml
+++ b/model/Fruitfly-GEM.xml
@@ -13,10 +13,10 @@
             <rdf:Bag/>
           </dcterms:creator>
           <dcterms:created rdf:parseType="Resource">
-            <dcterms:W3CDTF>2022-05-03T19:18:10Z</dcterms:W3CDTF>
+            <dcterms:W3CDTF>2022-10-17T16:28:04Z</dcterms:W3CDTF>
           </dcterms:created>
           <dcterms:modified rdf:parseType="Resource">
-            <dcterms:W3CDTF>2022-05-03T19:18:10Z</dcterms:W3CDTF>
+            <dcterms:W3CDTF>2022-10-17T16:28:04Z</dcterms:W3CDTF>
           </dcterms:modified>
           <bqbiol:is>
             <rdf:Bag>
@@ -47,10 +47,10 @@
       <compartment metaid="i" sboTerm="SBO:0000290" id="i" name="Inner mitochondria" spatialDimensions="3" size="1" constant="true"/>
     </listOfCompartments>
     <listOfSpecies>
-      <species metaid="MAM00001c" sboTerm="SBO:0000247" id="MAM00001c" name="(-)-trans-carveol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H16O">
+      <species metaid="M_MAM00001c" sboTerm="SBO:0000247" id="M_MAM00001c" name="(-)-trans-carveol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H16O">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00001c">
+            <rdf:Description rdf:about="#M_MAM00001c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/carveol"/>
@@ -64,10 +64,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00001e" sboTerm="SBO:0000247" id="MAM00001e" name="(-)-trans-carveol" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H16O">
+      <species metaid="M_MAM00001e" sboTerm="SBO:0000247" id="M_MAM00001e" name="(-)-trans-carveol" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H16O">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00001e">
+            <rdf:Description rdf:about="#M_MAM00001e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/carveol"/>
@@ -81,10 +81,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00002c" sboTerm="SBO:0000247" id="MAM00002c" name="(+)-alpha-pinene" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H16">
+      <species metaid="M_MAM00002c" sboTerm="SBO:0000247" id="M_MAM00002c" name="(+)-alpha-pinene" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H16">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00002c">
+            <rdf:Description rdf:about="#M_MAM00002c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/appnn"/>
@@ -100,10 +100,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00002e" sboTerm="SBO:0000247" id="MAM00002e" name="(+)-alpha-pinene" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H16">
+      <species metaid="M_MAM00002e" sboTerm="SBO:0000247" id="M_MAM00002e" name="(+)-alpha-pinene" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H16">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00002e">
+            <rdf:Description rdf:about="#M_MAM00002e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/appnn"/>
@@ -119,10 +119,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00003c" sboTerm="SBO:0000247" id="MAM00003c" name="(10Z)-heptadecenoic acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C17H31O2">
+      <species metaid="M_MAM00003c" sboTerm="SBO:0000247" id="M_MAM00003c" name="(10Z)-heptadecenoic acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C17H31O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00003c">
+            <rdf:Description rdf:about="#M_MAM00003c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:78990"/>
@@ -136,10 +136,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00003l" sboTerm="SBO:0000247" id="MAM00003l" name="(10Z)-heptadecenoic acid" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C17H31O2">
+      <species metaid="M_MAM00003l" sboTerm="SBO:0000247" id="M_MAM00003l" name="(10Z)-heptadecenoic acid" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C17H31O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00003l">
+            <rdf:Description rdf:about="#M_MAM00003l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:78990"/>
@@ -153,10 +153,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00003r" sboTerm="SBO:0000247" id="MAM00003r" name="(10Z)-heptadecenoic acid" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C17H31O2">
+      <species metaid="M_MAM00003r" sboTerm="SBO:0000247" id="M_MAM00003r" name="(10Z)-heptadecenoic acid" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C17H31O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00003r">
+            <rdf:Description rdf:about="#M_MAM00003r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:78990"/>
@@ -170,10 +170,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00003e" sboTerm="SBO:0000247" id="MAM00003e" name="(10Z)-heptadecenoic acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C17H31O2">
+      <species metaid="M_MAM00003e" sboTerm="SBO:0000247" id="M_MAM00003e" name="(10Z)-heptadecenoic acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C17H31O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00003e">
+            <rdf:Description rdf:about="#M_MAM00003e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:78990"/>
@@ -187,10 +187,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00004c" sboTerm="SBO:0000247" id="MAM00004c" name="(10Z)-heptadecenoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C38H62N7O17P3S">
+      <species metaid="M_MAM00004c" sboTerm="SBO:0000247" id="M_MAM00004c" name="(10Z)-heptadecenoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C38H62N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00004c">
+            <rdf:Description rdf:about="#M_MAM00004c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM148601"/>
@@ -201,10 +201,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00004m" sboTerm="SBO:0000247" id="MAM00004m" name="(10Z)-heptadecenoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C38H62N7O17P3S">
+      <species metaid="M_MAM00004m" sboTerm="SBO:0000247" id="M_MAM00004m" name="(10Z)-heptadecenoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C38H62N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00004m">
+            <rdf:Description rdf:about="#M_MAM00004m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM148601"/>
@@ -215,10 +215,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00004r" sboTerm="SBO:0000247" id="MAM00004r" name="(10Z)-heptadecenoyl-CoA" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C38H62N7O17P3S">
+      <species metaid="M_MAM00004r" sboTerm="SBO:0000247" id="M_MAM00004r" name="(10Z)-heptadecenoyl-CoA" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C38H62N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00004r">
+            <rdf:Description rdf:about="#M_MAM00004r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM148601"/>
@@ -229,10 +229,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00005c" sboTerm="SBO:0000247" id="MAM00005c" name="(11R)-HPETE" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O4">
+      <species metaid="M_MAM00005c" sboTerm="SBO:0000247" id="M_MAM00005c" name="(11R)-HPETE" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00005c">
+            <rdf:Description rdf:about="#M_MAM00005c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:34127"/>
@@ -245,10 +245,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00006c" sboTerm="SBO:0000247" id="MAM00006c" name="(11Z)-docosenoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C43H72N7O17P3S">
+      <species metaid="M_MAM00006c" sboTerm="SBO:0000247" id="M_MAM00006c" name="(11Z)-docosenoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C43H72N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00006c">
+            <rdf:Description rdf:about="#M_MAM00006c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M00006"/>
@@ -258,10 +258,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00006m" sboTerm="SBO:0000247" id="MAM00006m" name="(11Z)-docosenoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C43H72N7O17P3S">
+      <species metaid="M_MAM00006m" sboTerm="SBO:0000247" id="M_MAM00006m" name="(11Z)-docosenoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C43H72N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00006m">
+            <rdf:Description rdf:about="#M_MAM00006m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M00006"/>
@@ -271,10 +271,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00006r" sboTerm="SBO:0000247" id="MAM00006r" name="(11Z)-docosenoyl-CoA" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C43H72N7O17P3S">
+      <species metaid="M_MAM00006r" sboTerm="SBO:0000247" id="M_MAM00006r" name="(11Z)-docosenoyl-CoA" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C43H72N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00006r">
+            <rdf:Description rdf:about="#M_MAM00006r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M00006"/>
@@ -284,10 +284,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00007c" sboTerm="SBO:0000247" id="MAM00007c" name="(11Z)-eicosenoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H68N7O17P3S">
+      <species metaid="M_MAM00007c" sboTerm="SBO:0000247" id="M_MAM00007c" name="(11Z)-eicosenoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H68N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00007c">
+            <rdf:Description rdf:about="#M_MAM00007c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:74069"/>
@@ -300,10 +300,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00007m" sboTerm="SBO:0000247" id="MAM00007m" name="(11Z)-eicosenoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H68N7O17P3S">
+      <species metaid="M_MAM00007m" sboTerm="SBO:0000247" id="M_MAM00007m" name="(11Z)-eicosenoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H68N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00007m">
+            <rdf:Description rdf:about="#M_MAM00007m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:74069"/>
@@ -316,10 +316,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00007x" sboTerm="SBO:0000247" id="MAM00007x" name="(11Z)-eicosenoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H68N7O17P3S">
+      <species metaid="M_MAM00007x" sboTerm="SBO:0000247" id="M_MAM00007x" name="(11Z)-eicosenoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H68N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00007x">
+            <rdf:Description rdf:about="#M_MAM00007x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:74069"/>
@@ -332,10 +332,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00007r" sboTerm="SBO:0000247" id="MAM00007r" name="(11Z)-eicosenoyl-CoA" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H68N7O17P3S">
+      <species metaid="M_MAM00007r" sboTerm="SBO:0000247" id="M_MAM00007r" name="(11Z)-eicosenoyl-CoA" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H68N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00007r">
+            <rdf:Description rdf:about="#M_MAM00007r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:74069"/>
@@ -348,10 +348,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00008c" sboTerm="SBO:0000247" id="MAM00008c" name="(11Z,14Z)-eicosadienoic acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H35O2">
+      <species metaid="M_MAM00008c" sboTerm="SBO:0000247" id="M_MAM00008c" name="(11Z,14Z)-eicosadienoic acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H35O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00008c">
+            <rdf:Description rdf:about="#M_MAM00008c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:77220"/>
@@ -365,10 +365,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00008l" sboTerm="SBO:0000247" id="MAM00008l" name="(11Z,14Z)-eicosadienoic acid" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H35O2">
+      <species metaid="M_MAM00008l" sboTerm="SBO:0000247" id="M_MAM00008l" name="(11Z,14Z)-eicosadienoic acid" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H35O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00008l">
+            <rdf:Description rdf:about="#M_MAM00008l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:77220"/>
@@ -382,10 +382,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00008r" sboTerm="SBO:0000247" id="MAM00008r" name="(11Z,14Z)-eicosadienoic acid" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H35O2">
+      <species metaid="M_MAM00008r" sboTerm="SBO:0000247" id="M_MAM00008r" name="(11Z,14Z)-eicosadienoic acid" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H35O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00008r">
+            <rdf:Description rdf:about="#M_MAM00008r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:77220"/>
@@ -399,10 +399,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00008e" sboTerm="SBO:0000247" id="MAM00008e" name="(11Z,14Z)-eicosadienoic acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H35O2">
+      <species metaid="M_MAM00008e" sboTerm="SBO:0000247" id="M_MAM00008e" name="(11Z,14Z)-eicosadienoic acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H35O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00008e">
+            <rdf:Description rdf:about="#M_MAM00008e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:77220"/>
@@ -416,10 +416,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00009c" sboTerm="SBO:0000247" id="MAM00009c" name="(11Z,14Z)-eicosadienoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H66N7O17P3S">
+      <species metaid="M_MAM00009c" sboTerm="SBO:0000247" id="M_MAM00009c" name="(11Z,14Z)-eicosadienoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H66N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00009c">
+            <rdf:Description rdf:about="#M_MAM00009c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:76410"/>
@@ -434,10 +434,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00009m" sboTerm="SBO:0000247" id="MAM00009m" name="(11Z,14Z)-eicosadienoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H66N7O17P3S">
+      <species metaid="M_MAM00009m" sboTerm="SBO:0000247" id="M_MAM00009m" name="(11Z,14Z)-eicosadienoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H66N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00009m">
+            <rdf:Description rdf:about="#M_MAM00009m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:76410"/>
@@ -452,10 +452,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00009r" sboTerm="SBO:0000247" id="MAM00009r" name="(11Z,14Z)-eicosadienoyl-CoA" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H66N7O17P3S">
+      <species metaid="M_MAM00009r" sboTerm="SBO:0000247" id="M_MAM00009r" name="(11Z,14Z)-eicosadienoyl-CoA" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H66N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00009r">
+            <rdf:Description rdf:about="#M_MAM00009r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:76410"/>
@@ -470,10 +470,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00010c" sboTerm="SBO:0000247" id="MAM00010c" name="(11Z,14Z,17Z)-eicosatrienoic acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H33O2">
+      <species metaid="M_MAM00010c" sboTerm="SBO:0000247" id="M_MAM00010c" name="(11Z,14Z,17Z)-eicosatrienoic acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H33O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00010c">
+            <rdf:Description rdf:about="#M_MAM00010c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:53460"/>
@@ -487,10 +487,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00010l" sboTerm="SBO:0000247" id="MAM00010l" name="(11Z,14Z,17Z)-eicosatrienoic acid" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H33O2">
+      <species metaid="M_MAM00010l" sboTerm="SBO:0000247" id="M_MAM00010l" name="(11Z,14Z,17Z)-eicosatrienoic acid" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H33O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00010l">
+            <rdf:Description rdf:about="#M_MAM00010l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:53460"/>
@@ -504,10 +504,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00010r" sboTerm="SBO:0000247" id="MAM00010r" name="(11Z,14Z,17Z)-eicosatrienoic acid" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H33O2">
+      <species metaid="M_MAM00010r" sboTerm="SBO:0000247" id="M_MAM00010r" name="(11Z,14Z,17Z)-eicosatrienoic acid" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H33O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00010r">
+            <rdf:Description rdf:about="#M_MAM00010r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:53460"/>
@@ -521,10 +521,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00010e" sboTerm="SBO:0000247" id="MAM00010e" name="(11Z,14Z,17Z)-eicosatrienoic acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H33O2">
+      <species metaid="M_MAM00010e" sboTerm="SBO:0000247" id="M_MAM00010e" name="(11Z,14Z,17Z)-eicosatrienoic acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H33O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00010e">
+            <rdf:Description rdf:about="#M_MAM00010e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:53460"/>
@@ -538,10 +538,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00011c" sboTerm="SBO:0000247" id="MAM00011c" name="(11Z,14Z,17Z)-eicosatrienoylcarnitine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H47NO4">
+      <species metaid="M_MAM00011c" sboTerm="SBO:0000247" id="M_MAM00011c" name="(11Z,14Z,17Z)-eicosatrienoylcarnitine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H47NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00011c">
+            <rdf:Description rdf:about="#M_MAM00011c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M00011"/>
@@ -551,10 +551,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00011m" sboTerm="SBO:0000247" id="MAM00011m" name="(11Z,14Z,17Z)-eicosatrienoylcarnitine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H47NO4">
+      <species metaid="M_MAM00011m" sboTerm="SBO:0000247" id="M_MAM00011m" name="(11Z,14Z,17Z)-eicosatrienoylcarnitine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H47NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00011m">
+            <rdf:Description rdf:about="#M_MAM00011m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M00011"/>
@@ -564,10 +564,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00011r" sboTerm="SBO:0000247" id="MAM00011r" name="(11Z,14Z,17Z)-eicosatrienoylcarnitine" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H47NO4">
+      <species metaid="M_MAM00011r" sboTerm="SBO:0000247" id="M_MAM00011r" name="(11Z,14Z,17Z)-eicosatrienoylcarnitine" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H47NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00011r">
+            <rdf:Description rdf:about="#M_MAM00011r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M00011"/>
@@ -577,10 +577,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00012c" sboTerm="SBO:0000247" id="MAM00012c" name="(11Z,14Z,17Z)-eicosatrienoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H64N7O17P3S">
+      <species metaid="M_MAM00012c" sboTerm="SBO:0000247" id="M_MAM00012c" name="(11Z,14Z,17Z)-eicosatrienoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H64N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00012c">
+            <rdf:Description rdf:about="#M_MAM00012c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:74328"/>
@@ -595,10 +595,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00012m" sboTerm="SBO:0000247" id="MAM00012m" name="(11Z,14Z,17Z)-eicosatrienoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H64N7O17P3S">
+      <species metaid="M_MAM00012m" sboTerm="SBO:0000247" id="M_MAM00012m" name="(11Z,14Z,17Z)-eicosatrienoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H64N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00012m">
+            <rdf:Description rdf:about="#M_MAM00012m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:74328"/>
@@ -613,10 +613,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00012r" sboTerm="SBO:0000247" id="MAM00012r" name="(11Z,14Z,17Z)-eicosatrienoyl-CoA" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H64N7O17P3S">
+      <species metaid="M_MAM00012r" sboTerm="SBO:0000247" id="M_MAM00012r" name="(11Z,14Z,17Z)-eicosatrienoyl-CoA" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H64N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00012r">
+            <rdf:Description rdf:about="#M_MAM00012r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:74328"/>
@@ -631,10 +631,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00013c" sboTerm="SBO:0000247" id="MAM00013c" name="(13E)-11alpha-hydroxy-9,15-dioxoprost-13-enoate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O5">
+      <species metaid="M_MAM00013c" sboTerm="SBO:0000247" id="M_MAM00013c" name="(13E)-11alpha-hydroxy-9,15-dioxoprost-13-enoate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00013c">
+            <rdf:Description rdf:about="#M_MAM00013c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/prostg1"/>
@@ -651,10 +651,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00014x" sboTerm="SBO:0000247" id="MAM00014x" name="(13E)-tetranor-16-carboxy-LTE4" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C19H25NO7S">
+      <species metaid="M_MAM00014x" sboTerm="SBO:0000247" id="M_MAM00014x" name="(13E)-tetranor-16-carboxy-LTE4" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C19H25NO7S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00014x">
+            <rdf:Description rdf:about="#M_MAM00014x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:74057"/>
@@ -667,10 +667,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00015x" sboTerm="SBO:0000247" id="MAM00015x" name="(13E)-tetranor-16-oxo-16-CoA-LTE4" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C40H56N8O22P3S2">
+      <species metaid="M_MAM00015x" sboTerm="SBO:0000247" id="M_MAM00015x" name="(13E)-tetranor-16-oxo-16-CoA-LTE4" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C40H56N8O22P3S2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00015x">
+            <rdf:Description rdf:about="#M_MAM00015x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM33354"/>
@@ -682,10 +682,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00016c" sboTerm="SBO:0000247" id="MAM00016c" name="(13Z)-docosenoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C43H72N7O17P3S">
+      <species metaid="M_MAM00016c" sboTerm="SBO:0000247" id="M_MAM00016c" name="(13Z)-docosenoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C43H72N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00016c">
+            <rdf:Description rdf:about="#M_MAM00016c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C16531"/>
@@ -699,10 +699,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00016m" sboTerm="SBO:0000247" id="MAM00016m" name="(13Z)-docosenoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C43H72N7O17P3S">
+      <species metaid="M_MAM00016m" sboTerm="SBO:0000247" id="M_MAM00016m" name="(13Z)-docosenoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C43H72N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00016m">
+            <rdf:Description rdf:about="#M_MAM00016m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C16531"/>
@@ -716,10 +716,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00016x" sboTerm="SBO:0000247" id="MAM00016x" name="(13Z)-docosenoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C43H72N7O17P3S">
+      <species metaid="M_MAM00016x" sboTerm="SBO:0000247" id="M_MAM00016x" name="(13Z)-docosenoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C43H72N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00016x">
+            <rdf:Description rdf:about="#M_MAM00016x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C16531"/>
@@ -733,10 +733,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00016r" sboTerm="SBO:0000247" id="MAM00016r" name="(13Z)-docosenoyl-CoA" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C43H72N7O17P3S">
+      <species metaid="M_MAM00016r" sboTerm="SBO:0000247" id="M_MAM00016r" name="(13Z)-docosenoyl-CoA" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C43H72N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00016r">
+            <rdf:Description rdf:about="#M_MAM00016r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C16531"/>
@@ -750,10 +750,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00017c" sboTerm="SBO:0000247" id="MAM00017c" name="(13Z)-eicosenoic acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H37O2">
+      <species metaid="M_MAM00017c" sboTerm="SBO:0000247" id="M_MAM00017c" name="(13Z)-eicosenoic acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H37O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00017c">
+            <rdf:Description rdf:about="#M_MAM00017c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:134479"/>
@@ -767,10 +767,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00017l" sboTerm="SBO:0000247" id="MAM00017l" name="(13Z)-eicosenoic acid" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H37O2">
+      <species metaid="M_MAM00017l" sboTerm="SBO:0000247" id="M_MAM00017l" name="(13Z)-eicosenoic acid" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H37O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00017l">
+            <rdf:Description rdf:about="#M_MAM00017l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:134479"/>
@@ -784,10 +784,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00017r" sboTerm="SBO:0000247" id="MAM00017r" name="(13Z)-eicosenoic acid" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H37O2">
+      <species metaid="M_MAM00017r" sboTerm="SBO:0000247" id="M_MAM00017r" name="(13Z)-eicosenoic acid" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H37O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00017r">
+            <rdf:Description rdf:about="#M_MAM00017r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:134479"/>
@@ -801,10 +801,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00017e" sboTerm="SBO:0000247" id="MAM00017e" name="(13Z)-eicosenoic acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H37O2">
+      <species metaid="M_MAM00017e" sboTerm="SBO:0000247" id="M_MAM00017e" name="(13Z)-eicosenoic acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H37O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00017e">
+            <rdf:Description rdf:about="#M_MAM00017e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:134479"/>
@@ -818,10 +818,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00018c" sboTerm="SBO:0000247" id="MAM00018c" name="(13Z)-eicosenoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H68N7O17P3S">
+      <species metaid="M_MAM00018c" sboTerm="SBO:0000247" id="M_MAM00018c" name="(13Z)-eicosenoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H68N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00018c">
+            <rdf:Description rdf:about="#M_MAM00018c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:76563"/>
@@ -833,10 +833,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00018m" sboTerm="SBO:0000247" id="MAM00018m" name="(13Z)-eicosenoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H68N7O17P3S">
+      <species metaid="M_MAM00018m" sboTerm="SBO:0000247" id="M_MAM00018m" name="(13Z)-eicosenoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H68N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00018m">
+            <rdf:Description rdf:about="#M_MAM00018m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:76563"/>
@@ -848,10 +848,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00018x" sboTerm="SBO:0000247" id="MAM00018x" name="(13Z)-eicosenoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H68N7O17P3S">
+      <species metaid="M_MAM00018x" sboTerm="SBO:0000247" id="M_MAM00018x" name="(13Z)-eicosenoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H68N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00018x">
+            <rdf:Description rdf:about="#M_MAM00018x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:76563"/>
@@ -863,10 +863,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00018r" sboTerm="SBO:0000247" id="MAM00018r" name="(13Z)-eicosenoyl-CoA" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H68N7O17P3S">
+      <species metaid="M_MAM00018r" sboTerm="SBO:0000247" id="M_MAM00018r" name="(13Z)-eicosenoyl-CoA" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H68N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00018r">
+            <rdf:Description rdf:about="#M_MAM00018r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:76563"/>
@@ -878,10 +878,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00019c" sboTerm="SBO:0000247" id="MAM00019c" name="(13Z)-octadecenoic acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H33O2">
+      <species metaid="M_MAM00019c" sboTerm="SBO:0000247" id="M_MAM00019c" name="(13Z)-octadecenoic acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H33O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00019c">
+            <rdf:Description rdf:about="#M_MAM00019c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:82618"/>
@@ -895,10 +895,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00019l" sboTerm="SBO:0000247" id="MAM00019l" name="(13Z)-octadecenoic acid" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H33O2">
+      <species metaid="M_MAM00019l" sboTerm="SBO:0000247" id="M_MAM00019l" name="(13Z)-octadecenoic acid" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H33O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00019l">
+            <rdf:Description rdf:about="#M_MAM00019l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:82618"/>
@@ -912,10 +912,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00019r" sboTerm="SBO:0000247" id="MAM00019r" name="(13Z)-octadecenoic acid" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H33O2">
+      <species metaid="M_MAM00019r" sboTerm="SBO:0000247" id="M_MAM00019r" name="(13Z)-octadecenoic acid" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H33O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00019r">
+            <rdf:Description rdf:about="#M_MAM00019r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:82618"/>
@@ -929,10 +929,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00019e" sboTerm="SBO:0000247" id="MAM00019e" name="(13Z)-octadecenoic acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H33O2">
+      <species metaid="M_MAM00019e" sboTerm="SBO:0000247" id="M_MAM00019e" name="(13Z)-octadecenoic acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H33O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00019e">
+            <rdf:Description rdf:about="#M_MAM00019e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:82618"/>
@@ -946,10 +946,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00020c" sboTerm="SBO:0000247" id="MAM00020c" name="(13Z)-octadecenoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C39H64N7O17P3S">
+      <species metaid="M_MAM00020c" sboTerm="SBO:0000247" id="M_MAM00020c" name="(13Z)-octadecenoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C39H64N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00020c">
+            <rdf:Description rdf:about="#M_MAM00020c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M00020"/>
@@ -959,10 +959,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00020m" sboTerm="SBO:0000247" id="MAM00020m" name="(13Z)-octadecenoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C39H64N7O17P3S">
+      <species metaid="M_MAM00020m" sboTerm="SBO:0000247" id="M_MAM00020m" name="(13Z)-octadecenoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C39H64N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00020m">
+            <rdf:Description rdf:about="#M_MAM00020m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M00020"/>
@@ -972,10 +972,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00020r" sboTerm="SBO:0000247" id="MAM00020r" name="(13Z)-octadecenoyl-CoA" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C39H64N7O17P3S">
+      <species metaid="M_MAM00020r" sboTerm="SBO:0000247" id="M_MAM00020r" name="(13Z)-octadecenoyl-CoA" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C39H64N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00020r">
+            <rdf:Description rdf:about="#M_MAM00020r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M00020"/>
@@ -985,10 +985,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00021c" sboTerm="SBO:0000247" id="MAM00021c" name="(13Z,16Z)-docosadienoic acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C22H39O2">
+      <species metaid="M_MAM00021c" sboTerm="SBO:0000247" id="M_MAM00021c" name="(13Z,16Z)-docosadienoic acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C22H39O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00021c">
+            <rdf:Description rdf:about="#M_MAM00021c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:77806"/>
@@ -1002,10 +1002,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00021l" sboTerm="SBO:0000247" id="MAM00021l" name="(13Z,16Z)-docosadienoic acid" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C22H39O2">
+      <species metaid="M_MAM00021l" sboTerm="SBO:0000247" id="M_MAM00021l" name="(13Z,16Z)-docosadienoic acid" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C22H39O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00021l">
+            <rdf:Description rdf:about="#M_MAM00021l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:77806"/>
@@ -1019,10 +1019,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00021r" sboTerm="SBO:0000247" id="MAM00021r" name="(13Z,16Z)-docosadienoic acid" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C22H39O2">
+      <species metaid="M_MAM00021r" sboTerm="SBO:0000247" id="M_MAM00021r" name="(13Z,16Z)-docosadienoic acid" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C22H39O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00021r">
+            <rdf:Description rdf:about="#M_MAM00021r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:77806"/>
@@ -1036,10 +1036,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00021e" sboTerm="SBO:0000247" id="MAM00021e" name="(13Z,16Z)-docosadienoic acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C22H39O2">
+      <species metaid="M_MAM00021e" sboTerm="SBO:0000247" id="M_MAM00021e" name="(13Z,16Z)-docosadienoic acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C22H39O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00021e">
+            <rdf:Description rdf:about="#M_MAM00021e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:77806"/>
@@ -1053,10 +1053,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00022c" sboTerm="SBO:0000247" id="MAM00022c" name="(13Z,16Z)-docosadienoylcarnitine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C29H52NO4">
+      <species metaid="M_MAM00022c" sboTerm="SBO:0000247" id="M_MAM00022c" name="(13Z,16Z)-docosadienoylcarnitine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C29H52NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00022c">
+            <rdf:Description rdf:about="#M_MAM00022c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:73120"/>
@@ -1068,10 +1068,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00022m" sboTerm="SBO:0000247" id="MAM00022m" name="(13Z,16Z)-docosadienoylcarnitine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C29H52NO4">
+      <species metaid="M_MAM00022m" sboTerm="SBO:0000247" id="M_MAM00022m" name="(13Z,16Z)-docosadienoylcarnitine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C29H52NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00022m">
+            <rdf:Description rdf:about="#M_MAM00022m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:73120"/>
@@ -1083,10 +1083,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00022r" sboTerm="SBO:0000247" id="MAM00022r" name="(13Z,16Z)-docosadienoylcarnitine" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C29H52NO4">
+      <species metaid="M_MAM00022r" sboTerm="SBO:0000247" id="M_MAM00022r" name="(13Z,16Z)-docosadienoylcarnitine" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C29H52NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00022r">
+            <rdf:Description rdf:about="#M_MAM00022r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:73120"/>
@@ -1098,10 +1098,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM00023c" sboTerm="SBO:0000247" id="MAM00023c" name="(13Z,16Z)-docosadienoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C43H70N7O17P3S">
+      <species metaid="M_MAM00023c" sboTerm="SBO:0000247" id="M_MAM00023c" name="(13Z,16Z)-docosadienoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C43H70N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00023c">
+            <rdf:Description rdf:about="#M_MAM00023c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C16645"/>
@@ -1114,10 +1114,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM00023m" sboTerm="SBO:0000247" id="MAM00023m" name="(13Z,16Z)-docosadienoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C43H70N7O17P3S">
+      <species metaid="M_MAM00023m" sboTerm="SBO:0000247" id="M_MAM00023m" name="(13Z,16Z)-docosadienoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C43H70N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00023m">
+            <rdf:Description rdf:about="#M_MAM00023m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C16645"/>
@@ -1130,10 +1130,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM00023r" sboTerm="SBO:0000247" id="MAM00023r" name="(13Z,16Z)-docosadienoyl-CoA" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C43H70N7O17P3S">
+      <species metaid="M_MAM00023r" sboTerm="SBO:0000247" id="M_MAM00023r" name="(13Z,16Z)-docosadienoyl-CoA" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C43H70N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00023r">
+            <rdf:Description rdf:about="#M_MAM00023r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C16645"/>
@@ -1146,10 +1146,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM00024c" sboTerm="SBO:0000247" id="MAM00024c" name="(15Z)-tetracosenoylcarnitine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C31H59NO4">
+      <species metaid="M_MAM00024c" sboTerm="SBO:0000247" id="M_MAM00024c" name="(15Z)-tetracosenoylcarnitine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C31H59NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00024c">
+            <rdf:Description rdf:about="#M_MAM00024c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/nrvnccrn"/>
@@ -1162,10 +1162,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00024r" sboTerm="SBO:0000247" id="MAM00024r" name="(15Z)-tetracosenoylcarnitine" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C31H59NO4">
+      <species metaid="M_MAM00024r" sboTerm="SBO:0000247" id="M_MAM00024r" name="(15Z)-tetracosenoylcarnitine" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C31H59NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00024r">
+            <rdf:Description rdf:about="#M_MAM00024r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/nrvnccrn"/>
@@ -1178,10 +1178,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00025c" sboTerm="SBO:0000247" id="MAM00025c" name="(15Z)-tetracosenoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C45H76N7O17P3S">
+      <species metaid="M_MAM00025c" sboTerm="SBO:0000247" id="M_MAM00025c" name="(15Z)-tetracosenoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C45H76N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00025c">
+            <rdf:Description rdf:about="#M_MAM00025c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/nrvnccoa"/>
@@ -1197,10 +1197,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00025x" sboTerm="SBO:0000247" id="MAM00025x" name="(15Z)-tetracosenoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C45H76N7O17P3S">
+      <species metaid="M_MAM00025x" sboTerm="SBO:0000247" id="M_MAM00025x" name="(15Z)-tetracosenoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C45H76N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00025x">
+            <rdf:Description rdf:about="#M_MAM00025x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/nrvnccoa"/>
@@ -1216,10 +1216,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00025r" sboTerm="SBO:0000247" id="MAM00025r" name="(15Z)-tetracosenoyl-CoA" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C45H76N7O17P3S">
+      <species metaid="M_MAM00025r" sboTerm="SBO:0000247" id="M_MAM00025r" name="(15Z)-tetracosenoyl-CoA" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C45H76N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00025r">
+            <rdf:Description rdf:about="#M_MAM00025r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/nrvnccoa"/>
@@ -1235,10 +1235,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00026m" sboTerm="SBO:0000247" id="MAM00026m" name="(18E)-20-oxo-20-CoA-LTB4" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C41H57N7O21P3S">
+      <species metaid="M_MAM00026m" sboTerm="SBO:0000247" id="M_MAM00026m" name="(18E)-20-oxo-20-CoA-LTB4" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C41H57N7O21P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00026m">
+            <rdf:Description rdf:about="#M_MAM00026m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM33779"/>
@@ -1249,10 +1249,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00026x" sboTerm="SBO:0000247" id="MAM00026x" name="(18E)-20-oxo-20-CoA-LTB4" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C41H57N7O21P3S">
+      <species metaid="M_MAM00026x" sboTerm="SBO:0000247" id="M_MAM00026x" name="(18E)-20-oxo-20-CoA-LTB4" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C41H57N7O21P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00026x">
+            <rdf:Description rdf:about="#M_MAM00026x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM33779"/>
@@ -1263,10 +1263,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00027x" sboTerm="SBO:0000247" id="MAM00027x" name="(18E)-20-oxo-20-CoA-LTE4" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C44H62N8O22P3S2">
+      <species metaid="M_MAM00027x" sboTerm="SBO:0000247" id="M_MAM00027x" name="(18E)-20-oxo-20-CoA-LTE4" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C44H62N8O22P3S2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00027x">
+            <rdf:Description rdf:about="#M_MAM00027x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM33780"/>
@@ -1278,10 +1278,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00028c" sboTerm="SBO:0000247" id="MAM00028c" name="(18R)-HEPE" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H29O3">
+      <species metaid="M_MAM00028c" sboTerm="SBO:0000247" id="M_MAM00028c" name="(18R)-HEPE" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H29O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00028c">
+            <rdf:Description rdf:about="#M_MAM00028c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:81563"/>
@@ -1294,10 +1294,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00029c" sboTerm="SBO:0000247" id="MAM00029c" name="(18R)-hydroxy-(5Z,8Z,11Z,14Z,16E)-eicosapentaenoic acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H29O3">
+      <species metaid="M_MAM00029c" sboTerm="SBO:0000247" id="M_MAM00029c" name="(18R)-hydroxy-(5Z,8Z,11Z,14Z,16E)-eicosapentaenoic acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H29O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00029c">
+            <rdf:Description rdf:about="#M_MAM00029c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:81563"/>
@@ -1311,10 +1311,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00030c" sboTerm="SBO:0000247" id="MAM00030c" name="(1aalpha,2beta,3alpha,11calpha)-1a,2,3,11c-tetrahydro-6,11-dimethylbenzo[6,7]phenanthro[3,4-b]oxirene-2,3-diol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H18O3">
+      <species metaid="M_MAM00030c" sboTerm="SBO:0000247" id="M_MAM00030c" name="(1aalpha,2beta,3alpha,11calpha)-1a,2,3,11c-tetrahydro-6,11-dimethylbenzo[6,7]phenanthro[3,4-b]oxirene-2,3-diol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H18O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00030c">
+            <rdf:Description rdf:about="#M_MAM00030c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:82558"/>
@@ -1327,10 +1327,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00031c" sboTerm="SBO:0000247" id="MAM00031c" name="(1R)-hydroxy-(2R)-glutathionyl-1,2-dihydronaphthalene" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C20H23N3O7S">
+      <species metaid="M_MAM00031c" sboTerm="SBO:0000247" id="M_MAM00031c" name="(1R)-hydroxy-(2R)-glutathionyl-1,2-dihydronaphthalene" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C20H23N3O7S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00031c">
+            <rdf:Description rdf:about="#M_MAM00031c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:33995"/>
@@ -1343,10 +1343,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00032c" sboTerm="SBO:0000247" id="MAM00032c" name="(1R,2S)-naphthalene 1,2-oxide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H8O">
+      <species metaid="M_MAM00032c" sboTerm="SBO:0000247" id="M_MAM00032c" name="(1R,2S)-naphthalene 1,2-oxide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H8O">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00032c">
+            <rdf:Description rdf:about="#M_MAM00032c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/onpthl"/>
@@ -1362,10 +1362,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00032e" sboTerm="SBO:0000247" id="MAM00032e" name="(1R,2S)-naphthalene 1,2-oxide" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H8O">
+      <species metaid="M_MAM00032e" sboTerm="SBO:0000247" id="M_MAM00032e" name="(1R,2S)-naphthalene 1,2-oxide" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H8O">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00032e">
+            <rdf:Description rdf:about="#M_MAM00032e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/onpthl"/>
@@ -1381,10 +1381,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00033c" sboTerm="SBO:0000247" id="MAM00033c" name="(1S)-hydroxy-(2S)-glutathionyl-1,2-dihydronaphthalene" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C20H23N3O7S">
+      <species metaid="M_MAM00033c" sboTerm="SBO:0000247" id="M_MAM00033c" name="(1S)-hydroxy-(2S)-glutathionyl-1,2-dihydronaphthalene" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C20H23N3O7S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00033c">
+            <rdf:Description rdf:about="#M_MAM00033c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:34000"/>
@@ -1397,10 +1397,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00034c" sboTerm="SBO:0000247" id="MAM00034c" name="(1S,2R)-naphthalene 1,2-oxide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H8O">
+      <species metaid="M_MAM00034c" sboTerm="SBO:0000247" id="M_MAM00034c" name="(1S,2R)-naphthalene 1,2-oxide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H8O">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00034c">
+            <rdf:Description rdf:about="#M_MAM00034c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:34001"/>
@@ -1413,10 +1413,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00035c" sboTerm="SBO:0000247" id="MAM00035c" name="(24R)-24,25-dihydroxycalciol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H44O3">
+      <species metaid="M_MAM00035c" sboTerm="SBO:0000247" id="M_MAM00035c" name="(24R)-24,25-dihydroxycalciol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H44O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00035c">
+            <rdf:Description rdf:about="#M_MAM00035c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/2425dhvitd3"/>
@@ -1431,10 +1431,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00035m" sboTerm="SBO:0000247" id="MAM00035m" name="(24R)-24,25-dihydroxycalciol" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H44O3">
+      <species metaid="M_MAM00035m" sboTerm="SBO:0000247" id="M_MAM00035m" name="(24R)-24,25-dihydroxycalciol" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H44O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00035m">
+            <rdf:Description rdf:about="#M_MAM00035m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/2425dhvitd3"/>
@@ -1449,10 +1449,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00035e" sboTerm="SBO:0000247" id="MAM00035e" name="(24R)-24,25-dihydroxycalciol" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H44O3">
+      <species metaid="M_MAM00035e" sboTerm="SBO:0000247" id="M_MAM00035e" name="(24R)-24,25-dihydroxycalciol" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H44O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00035e">
+            <rdf:Description rdf:about="#M_MAM00035e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/2425dhvitd3"/>
@@ -1467,10 +1467,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00036m" sboTerm="SBO:0000247" id="MAM00036m" name="(24R,25R)3alpha,7alpha,12alpha,24-tetrahydroxy-5beta-cholestanoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C48H76N7O21P3S">
+      <species metaid="M_MAM00036m" sboTerm="SBO:0000247" id="M_MAM00036m" name="(24R,25R)3alpha,7alpha,12alpha,24-tetrahydroxy-5beta-cholestanoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C48H76N7O21P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00036m">
+            <rdf:Description rdf:about="#M_MAM00036m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:52050"/>
@@ -1485,10 +1485,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00036x" sboTerm="SBO:0000247" id="MAM00036x" name="(24R,25R)3alpha,7alpha,12alpha,24-tetrahydroxy-5beta-cholestanoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C48H76N7O21P3S">
+      <species metaid="M_MAM00036x" sboTerm="SBO:0000247" id="M_MAM00036x" name="(24R,25R)3alpha,7alpha,12alpha,24-tetrahydroxy-5beta-cholestanoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C48H76N7O21P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00036x">
+            <rdf:Description rdf:about="#M_MAM00036x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:52050"/>
@@ -1503,10 +1503,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00037x" sboTerm="SBO:0000247" id="MAM00037x" name="(24R,25R)3alpha,7alpha,24-trihydroxy-5beta-cholestanoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C48H76N7O20P3S">
+      <species metaid="M_MAM00037x" sboTerm="SBO:0000247" id="M_MAM00037x" name="(24R,25R)3alpha,7alpha,24-trihydroxy-5beta-cholestanoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C48H76N7O20P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00037x">
+            <rdf:Description rdf:about="#M_MAM00037x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/thcholoylcoa"/>
@@ -1523,10 +1523,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00038c" sboTerm="SBO:0000247" id="MAM00038c" name="(2E)-decenoyl-[ACP]" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C21H37N2O8PRS">
+      <species metaid="M_MAM00038c" sboTerm="SBO:0000247" id="M_MAM00038c" name="(2E)-decenoyl-[ACP]" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C21H37N2O8PRS">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00038c">
+            <rdf:Description rdf:about="#M_MAM00038c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C05754"/>
@@ -1538,10 +1538,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00039m" sboTerm="SBO:0000247" id="MAM00039m" name="(2E)-decenoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C31H48N7O17P3S">
+      <species metaid="M_MAM00039m" sboTerm="SBO:0000247" id="M_MAM00039m" name="(2E)-decenoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C31H48N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00039m">
+            <rdf:Description rdf:about="#M_MAM00039m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dc2coa"/>
@@ -1557,10 +1557,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00039x" sboTerm="SBO:0000247" id="MAM00039x" name="(2E)-decenoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C31H48N7O17P3S">
+      <species metaid="M_MAM00039x" sboTerm="SBO:0000247" id="M_MAM00039x" name="(2E)-decenoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C31H48N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00039x">
+            <rdf:Description rdf:about="#M_MAM00039x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dc2coa"/>
@@ -1576,10 +1576,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00040c" sboTerm="SBO:0000247" id="MAM00040c" name="(2E)-docosenoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C43H72N7O17P3S">
+      <species metaid="M_MAM00040c" sboTerm="SBO:0000247" id="M_MAM00040c" name="(2E)-docosenoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C43H72N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00040c">
+            <rdf:Description rdf:about="#M_MAM00040c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:74692"/>
@@ -1591,10 +1591,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00040m" sboTerm="SBO:0000247" id="MAM00040m" name="(2E)-docosenoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C43H72N7O17P3S">
+      <species metaid="M_MAM00040m" sboTerm="SBO:0000247" id="M_MAM00040m" name="(2E)-docosenoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C43H72N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00040m">
+            <rdf:Description rdf:about="#M_MAM00040m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:74692"/>
@@ -1606,10 +1606,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00040x" sboTerm="SBO:0000247" id="MAM00040x" name="(2E)-docosenoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C43H72N7O17P3S">
+      <species metaid="M_MAM00040x" sboTerm="SBO:0000247" id="M_MAM00040x" name="(2E)-docosenoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C43H72N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00040x">
+            <rdf:Description rdf:about="#M_MAM00040x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:74692"/>
@@ -1621,10 +1621,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00041c" sboTerm="SBO:0000247" id="MAM00041c" name="(2E)-dodecenoyl-[ACP]" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C23H41N2O8PRS">
+      <species metaid="M_MAM00041c" sboTerm="SBO:0000247" id="M_MAM00041c" name="(2E)-dodecenoyl-[ACP]" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C23H41N2O8PRS">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00041c">
+            <rdf:Description rdf:about="#M_MAM00041c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:10725"/>
@@ -1637,10 +1637,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00042m" sboTerm="SBO:0000247" id="MAM00042m" name="(2E)-dodecenoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C33H52N7O17P3S">
+      <species metaid="M_MAM00042m" sboTerm="SBO:0000247" id="M_MAM00042m" name="(2E)-dodecenoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C33H52N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00042m">
+            <rdf:Description rdf:about="#M_MAM00042m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dd2coa"/>
@@ -1656,10 +1656,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00042x" sboTerm="SBO:0000247" id="MAM00042x" name="(2E)-dodecenoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C33H52N7O17P3S">
+      <species metaid="M_MAM00042x" sboTerm="SBO:0000247" id="M_MAM00042x" name="(2E)-dodecenoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C33H52N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00042x">
+            <rdf:Description rdf:about="#M_MAM00042x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dd2coa"/>
@@ -1675,10 +1675,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00043c" sboTerm="SBO:0000247" id="MAM00043c" name="(2E)-eicosenoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H68N7O17P3S">
+      <species metaid="M_MAM00043c" sboTerm="SBO:0000247" id="M_MAM00043c" name="(2E)-eicosenoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H68N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00043c">
+            <rdf:Description rdf:about="#M_MAM00043c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:74691"/>
@@ -1691,10 +1691,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00043m" sboTerm="SBO:0000247" id="MAM00043m" name="(2E)-eicosenoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H68N7O17P3S">
+      <species metaid="M_MAM00043m" sboTerm="SBO:0000247" id="M_MAM00043m" name="(2E)-eicosenoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H68N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00043m">
+            <rdf:Description rdf:about="#M_MAM00043m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:74691"/>
@@ -1707,10 +1707,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00043x" sboTerm="SBO:0000247" id="MAM00043x" name="(2E)-eicosenoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H68N7O17P3S">
+      <species metaid="M_MAM00043x" sboTerm="SBO:0000247" id="M_MAM00043x" name="(2E)-eicosenoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H68N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00043x">
+            <rdf:Description rdf:about="#M_MAM00043x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:74691"/>
@@ -1723,10 +1723,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00044c" sboTerm="SBO:0000247" id="MAM00044c" name="(2E)-heneicosenoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C42H70N7O17P3S">
+      <species metaid="M_MAM00044c" sboTerm="SBO:0000247" id="M_MAM00044c" name="(2E)-heneicosenoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C42H70N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00044c">
+            <rdf:Description rdf:about="#M_MAM00044c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M00044"/>
@@ -1736,10 +1736,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00044m" sboTerm="SBO:0000247" id="MAM00044m" name="(2E)-heneicosenoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C42H70N7O17P3S">
+      <species metaid="M_MAM00044m" sboTerm="SBO:0000247" id="M_MAM00044m" name="(2E)-heneicosenoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C42H70N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00044m">
+            <rdf:Description rdf:about="#M_MAM00044m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M00044"/>
@@ -1749,10 +1749,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00045c" sboTerm="SBO:0000247" id="MAM00045c" name="(2E)-heptadecenoyl-[ACP]" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C28H51N2O8PRS">
+      <species metaid="M_MAM00045c" sboTerm="SBO:0000247" id="M_MAM00045c" name="(2E)-heptadecenoyl-[ACP]" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C28H51N2O8PRS">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00045c">
+            <rdf:Description rdf:about="#M_MAM00045c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M00045"/>
@@ -1762,10 +1762,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00046m" sboTerm="SBO:0000247" id="MAM00046m" name="(2E)-heptadecenoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C38H62N7O17P3S">
+      <species metaid="M_MAM00046m" sboTerm="SBO:0000247" id="M_MAM00046m" name="(2E)-heptadecenoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C38H62N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00046m">
+            <rdf:Description rdf:about="#M_MAM00046m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:77551"/>
@@ -1777,10 +1777,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00047c" sboTerm="SBO:0000247" id="MAM00047c" name="(2E)-heptenoyl-[ACP]" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H31N2O8PRS">
+      <species metaid="M_MAM00047c" sboTerm="SBO:0000247" id="M_MAM00047c" name="(2E)-heptenoyl-[ACP]" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H31N2O8PRS">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00047c">
+            <rdf:Description rdf:about="#M_MAM00047c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M00047"/>
@@ -1790,10 +1790,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00048m" sboTerm="SBO:0000247" id="MAM00048m" name="(2E)-heptenoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C28H42N7O17P3S">
+      <species metaid="M_MAM00048m" sboTerm="SBO:0000247" id="M_MAM00048m" name="(2E)-heptenoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C28H42N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00048m">
+            <rdf:Description rdf:about="#M_MAM00048m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:166980"/>
@@ -1804,10 +1804,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00049c" sboTerm="SBO:0000247" id="MAM00049c" name="(2E)-hexacosenoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C47H80N7O17P3S">
+      <species metaid="M_MAM00049c" sboTerm="SBO:0000247" id="M_MAM00049c" name="(2E)-hexacosenoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C47H80N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00049c">
+            <rdf:Description rdf:about="#M_MAM00049c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:74281"/>
@@ -1819,10 +1819,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00049x" sboTerm="SBO:0000247" id="MAM00049x" name="(2E)-hexacosenoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C47H80N7O17P3S">
+      <species metaid="M_MAM00049x" sboTerm="SBO:0000247" id="M_MAM00049x" name="(2E)-hexacosenoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C47H80N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00049x">
+            <rdf:Description rdf:about="#M_MAM00049x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:74281"/>
@@ -1834,10 +1834,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00050c" sboTerm="SBO:0000247" id="MAM00050c" name="(2E)-hexadecenoyl-[ACP]" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C27H49N2O8PRS">
+      <species metaid="M_MAM00050c" sboTerm="SBO:0000247" id="M_MAM00050c" name="(2E)-hexadecenoyl-[ACP]" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C27H49N2O8PRS">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00050c">
+            <rdf:Description rdf:about="#M_MAM00050c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C05763"/>
@@ -1849,10 +1849,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00051m" sboTerm="SBO:0000247" id="MAM00051m" name="(2E)-hexadecenoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C37H60N7O17P3S">
+      <species metaid="M_MAM00051m" sboTerm="SBO:0000247" id="M_MAM00051m" name="(2E)-hexadecenoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C37H60N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00051m">
+            <rdf:Description rdf:about="#M_MAM00051m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hdd2coa"/>
@@ -1869,10 +1869,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00051x" sboTerm="SBO:0000247" id="MAM00051x" name="(2E)-hexadecenoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C37H60N7O17P3S">
+      <species metaid="M_MAM00051x" sboTerm="SBO:0000247" id="M_MAM00051x" name="(2E)-hexadecenoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C37H60N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00051x">
+            <rdf:Description rdf:about="#M_MAM00051x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hdd2coa"/>
@@ -1889,10 +1889,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00052c" sboTerm="SBO:0000247" id="MAM00052c" name="(2E)-hexenoyl-[ACP]" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C17H29N2O8PRS">
+      <species metaid="M_MAM00052c" sboTerm="SBO:0000247" id="M_MAM00052c" name="(2E)-hexenoyl-[ACP]" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C17H29N2O8PRS">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00052c">
+            <rdf:Description rdf:about="#M_MAM00052c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:10727"/>
@@ -1905,10 +1905,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00053m" sboTerm="SBO:0000247" id="MAM00053m" name="(2E)-hexenoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C27H40N7O17P3S">
+      <species metaid="M_MAM00053m" sboTerm="SBO:0000247" id="M_MAM00053m" name="(2E)-hexenoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C27H40N7O17P3S">
         <annotation>
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-            <rdf:Description rdf:about="#MAM00053m">
+            <rdf:Description rdf:about="#M_MAM00053m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:28706"/>
@@ -1923,10 +1923,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00053x" sboTerm="SBO:0000247" id="MAM00053x" name="(2E)-hexenoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C27H40N7O17P3S">
+      <species metaid="M_MAM00053x" sboTerm="SBO:0000247" id="M_MAM00053x" name="(2E)-hexenoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C27H40N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00053x">
+            <rdf:Description rdf:about="#M_MAM00053x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:28706"/>
@@ -1941,10 +1941,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00054c" sboTerm="SBO:0000247" id="MAM00054c" name="(2E)-nonadecenoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C40H66N7O17P3S">
+      <species metaid="M_MAM00054c" sboTerm="SBO:0000247" id="M_MAM00054c" name="(2E)-nonadecenoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C40H66N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00054c">
+            <rdf:Description rdf:about="#M_MAM00054c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M00054"/>
@@ -1954,10 +1954,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00054m" sboTerm="SBO:0000247" id="MAM00054m" name="(2E)-nonadecenoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C40H66N7O17P3S">
+      <species metaid="M_MAM00054m" sboTerm="SBO:0000247" id="M_MAM00054m" name="(2E)-nonadecenoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C40H66N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00054m">
+            <rdf:Description rdf:about="#M_MAM00054m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M00054"/>
@@ -1967,10 +1967,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00055c" sboTerm="SBO:0000247" id="MAM00055c" name="(2E)-nonenoyl-[ACP]" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H35N2O8PRS">
+      <species metaid="M_MAM00055c" sboTerm="SBO:0000247" id="M_MAM00055c" name="(2E)-nonenoyl-[ACP]" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H35N2O8PRS">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00055c">
+            <rdf:Description rdf:about="#M_MAM00055c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M00055"/>
@@ -1980,10 +1980,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00056m" sboTerm="SBO:0000247" id="MAM00056m" name="(2E)-nonenoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C30H46N7O17P3S">
+      <species metaid="M_MAM00056m" sboTerm="SBO:0000247" id="M_MAM00056m" name="(2E)-nonenoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C30H46N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00056m">
+            <rdf:Description rdf:about="#M_MAM00056m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:76292"/>
@@ -1995,10 +1995,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00057c" sboTerm="SBO:0000247" id="MAM00057c" name="(2E)-octadecenoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C39H64N7O17P3S">
+      <species metaid="M_MAM00057c" sboTerm="SBO:0000247" id="M_MAM00057c" name="(2E)-octadecenoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C39H64N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00057c">
+            <rdf:Description rdf:about="#M_MAM00057c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/od2coa"/>
@@ -2015,10 +2015,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00057m" sboTerm="SBO:0000247" id="MAM00057m" name="(2E)-octadecenoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C39H64N7O17P3S">
+      <species metaid="M_MAM00057m" sboTerm="SBO:0000247" id="M_MAM00057m" name="(2E)-octadecenoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C39H64N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00057m">
+            <rdf:Description rdf:about="#M_MAM00057m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/od2coa"/>
@@ -2035,10 +2035,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00057x" sboTerm="SBO:0000247" id="MAM00057x" name="(2E)-octadecenoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C39H64N7O17P3S">
+      <species metaid="M_MAM00057x" sboTerm="SBO:0000247" id="M_MAM00057x" name="(2E)-octadecenoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C39H64N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00057x">
+            <rdf:Description rdf:about="#M_MAM00057x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/od2coa"/>
@@ -2055,10 +2055,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00058c" sboTerm="SBO:0000247" id="MAM00058c" name="(2E)-octenoyl-[ACP]" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C19H33N2O8PRS">
+      <species metaid="M_MAM00058c" sboTerm="SBO:0000247" id="M_MAM00058c" name="(2E)-octenoyl-[ACP]" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C19H33N2O8PRS">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00058c">
+            <rdf:Description rdf:about="#M_MAM00058c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C05751"/>
@@ -2070,10 +2070,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00059m" sboTerm="SBO:0000247" id="MAM00059m" name="(2E)-octenoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C29H44N7O17P3S">
+      <species metaid="M_MAM00059m" sboTerm="SBO:0000247" id="M_MAM00059m" name="(2E)-octenoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C29H44N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00059m">
+            <rdf:Description rdf:about="#M_MAM00059m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:27537"/>
@@ -2088,10 +2088,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00059x" sboTerm="SBO:0000247" id="MAM00059x" name="(2E)-octenoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C29H44N7O17P3S">
+      <species metaid="M_MAM00059x" sboTerm="SBO:0000247" id="M_MAM00059x" name="(2E)-octenoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C29H44N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00059x">
+            <rdf:Description rdf:about="#M_MAM00059x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:27537"/>
@@ -2106,10 +2106,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00060c" sboTerm="SBO:0000247" id="MAM00060c" name="(2E)-pentadecenoyl-[ACP]" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C26H47N2O8PRS">
+      <species metaid="M_MAM00060c" sboTerm="SBO:0000247" id="M_MAM00060c" name="(2E)-pentadecenoyl-[ACP]" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C26H47N2O8PRS">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00060c">
+            <rdf:Description rdf:about="#M_MAM00060c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M00060"/>
@@ -2119,10 +2119,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00061m" sboTerm="SBO:0000247" id="MAM00061m" name="(2E)-pentadecenoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C36H58N7O17P3S">
+      <species metaid="M_MAM00061m" sboTerm="SBO:0000247" id="M_MAM00061m" name="(2E)-pentadecenoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C36H58N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00061m">
+            <rdf:Description rdf:about="#M_MAM00061m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:77545"/>
@@ -2134,10 +2134,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00062c" sboTerm="SBO:0000247" id="MAM00062c" name="(2E)-pentenoyl-[ACP]" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C16H27N2O8PRS">
+      <species metaid="M_MAM00062c" sboTerm="SBO:0000247" id="M_MAM00062c" name="(2E)-pentenoyl-[ACP]" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C16H27N2O8PRS">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00062c">
+            <rdf:Description rdf:about="#M_MAM00062c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M00062"/>
@@ -2147,10 +2147,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00063m" sboTerm="SBO:0000247" id="MAM00063m" name="(2E)-pentenoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C26H38N7O17P3S">
+      <species metaid="M_MAM00063m" sboTerm="SBO:0000247" id="M_MAM00063m" name="(2E)-pentenoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C26H38N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00063m">
+            <rdf:Description rdf:about="#M_MAM00063m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:86160"/>
@@ -2162,10 +2162,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00064c" sboTerm="SBO:0000247" id="MAM00064c" name="(2E)-tetracosenoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C45H76N7O17P3S">
+      <species metaid="M_MAM00064c" sboTerm="SBO:0000247" id="M_MAM00064c" name="(2E)-tetracosenoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C45H76N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00064c">
+            <rdf:Description rdf:about="#M_MAM00064c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:74693"/>
@@ -2178,10 +2178,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00064x" sboTerm="SBO:0000247" id="MAM00064x" name="(2E)-tetracosenoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C45H76N7O17P3S">
+      <species metaid="M_MAM00064x" sboTerm="SBO:0000247" id="M_MAM00064x" name="(2E)-tetracosenoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C45H76N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00064x">
+            <rdf:Description rdf:about="#M_MAM00064x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:74693"/>
@@ -2194,10 +2194,10 @@
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-      <species metaid="MAM00065c" sboTerm="SBO:0000247" id="MAM00065c" name="(2E)-tetradecenoyl-[ACP]" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C25H45N2O8PRS">
+      <species metaid="M_MAM00065c" sboTerm="SBO:0000247" id="M_MAM00065c" name="(2E)-tetradecenoyl-[ACP]" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C25H45N2O8PRS">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00065c">
+            <rdf:Description rdf:about="#M_MAM00065c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:10735"/>
@@ -2210,10 +2210,10 @@
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-      <species metaid="MAM00066m" sboTerm="SBO:0000247" id="MAM00066m" name="(2E)-tetradecenoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C35H56N7O17P3S">
+      <species metaid="M_MAM00066m" sboTerm="SBO:0000247" id="M_MAM00066m" name="(2E)-tetradecenoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C35H56N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00066m">
+            <rdf:Description rdf:about="#M_MAM00066m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:27721"/>
@@ -2227,10 +2227,10 @@
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-      <species metaid="MAM00066x" sboTerm="SBO:0000247" id="MAM00066x" name="(2E)-tetradecenoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C35H56N7O17P3S">
+      <species metaid="M_MAM00066x" sboTerm="SBO:0000247" id="M_MAM00066x" name="(2E)-tetradecenoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C35H56N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00066x">
+            <rdf:Description rdf:about="#M_MAM00066x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:27721"/>
@@ -2244,10 +2244,10 @@
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-      <species metaid="MAM00067c" sboTerm="SBO:0000247" id="MAM00067c" name="(2E)-tricosenoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C44H74N7O17P3S">
+      <species metaid="M_MAM00067c" sboTerm="SBO:0000247" id="M_MAM00067c" name="(2E)-tricosenoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C44H74N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00067c">
+            <rdf:Description rdf:about="#M_MAM00067c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:90119"/>
@@ -2259,10 +2259,10 @@
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-      <species metaid="MAM00068c" sboTerm="SBO:0000247" id="MAM00068c" name="(2E)-tridecenoyl-[ACP]" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H43N2O8PRS">
+      <species metaid="M_MAM00068c" sboTerm="SBO:0000247" id="M_MAM00068c" name="(2E)-tridecenoyl-[ACP]" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H43N2O8PRS">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00068c">
+            <rdf:Description rdf:about="#M_MAM00068c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M00068"/>
@@ -2272,10 +2272,10 @@
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-      <species metaid="MAM00069m" sboTerm="SBO:0000247" id="MAM00069m" name="(2E)-tridecenoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C34H54N7O17P3S">
+      <species metaid="M_MAM00069m" sboTerm="SBO:0000247" id="M_MAM00069m" name="(2E)-tridecenoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C34H54N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00069m">
+            <rdf:Description rdf:about="#M_MAM00069m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M00069"/>
@@ -2285,10 +2285,10 @@
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-      <species metaid="MAM00070c" sboTerm="SBO:0000247" id="MAM00070c" name="(2E)-undecenoyl-[ACP]" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C22H39N2O8PRS">
+      <species metaid="M_MAM00070c" sboTerm="SBO:0000247" id="M_MAM00070c" name="(2E)-undecenoyl-[ACP]" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C22H39N2O8PRS">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00070c">
+            <rdf:Description rdf:about="#M_MAM00070c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M00070"/>
@@ -2298,10 +2298,10 @@
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-      <species metaid="MAM00071m" sboTerm="SBO:0000247" id="MAM00071m" name="(2E)-undecenoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C32H50N7O17P3S">
+      <species metaid="M_MAM00071m" sboTerm="SBO:0000247" id="M_MAM00071m" name="(2E)-undecenoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C32H50N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00071m">
+            <rdf:Description rdf:about="#M_MAM00071m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:77548"/>
@@ -2313,10 +2313,10 @@
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-      <species metaid="MAM00072m" sboTerm="SBO:0000247" id="MAM00072m" name="(2E,4Z,7Z,10Z)-hexadecatetraenoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C37H54N7O17P3S">
+      <species metaid="M_MAM00072m" sboTerm="SBO:0000247" id="M_MAM00072m" name="(2E,4Z,7Z,10Z)-hexadecatetraenoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C37H54N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00072m">
+            <rdf:Description rdf:about="#M_MAM00072m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/CE2441"/>
@@ -2326,10 +2326,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00072x" sboTerm="SBO:0000247" id="MAM00072x" name="(2E,4Z,7Z,10Z)-hexadecatetraenoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C37H54N7O17P3S">
+      <species metaid="M_MAM00072x" sboTerm="SBO:0000247" id="M_MAM00072x" name="(2E,4Z,7Z,10Z)-hexadecatetraenoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C37H54N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00072x">
+            <rdf:Description rdf:about="#M_MAM00072x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/CE2441"/>
@@ -2339,10 +2339,10 @@
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         </annotation>
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-      <species metaid="MAM00073m" sboTerm="SBO:0000247" id="MAM00073m" name="(2E,6Z,9Z,12Z)-octadecatetraenoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C39H58N7O17P3S">
+      <species metaid="M_MAM00073m" sboTerm="SBO:0000247" id="M_MAM00073m" name="(2E,6Z,9Z,12Z)-octadecatetraenoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C39H58N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00073m">
+            <rdf:Description rdf:about="#M_MAM00073m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/CE2437"/>
@@ -2352,10 +2352,10 @@
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         </annotation>
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-      <species metaid="MAM00073x" sboTerm="SBO:0000247" id="MAM00073x" name="(2E,6Z,9Z,12Z)-octadecatetraenoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C39H58N7O17P3S">
+      <species metaid="M_MAM00073x" sboTerm="SBO:0000247" id="M_MAM00073x" name="(2E,6Z,9Z,12Z)-octadecatetraenoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C39H58N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00073x">
+            <rdf:Description rdf:about="#M_MAM00073x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/CE2437"/>
@@ -2365,10 +2365,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM00074c" sboTerm="SBO:0000247" id="MAM00074c" name="(2E,7Z,10Z,13Z,16Z)-docosapentaenoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C43H64N7O17P3S">
+      <species metaid="M_MAM00074c" sboTerm="SBO:0000247" id="M_MAM00074c" name="(2E,7Z,10Z,13Z,16Z)-docosapentaenoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C43H64N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00074c">
+            <rdf:Description rdf:about="#M_MAM00074c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM145822"/>
@@ -2379,10 +2379,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM00075x" sboTerm="SBO:0000247" id="MAM00075x" name="(2R)-pristanoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C40H68N7O17P3S">
+      <species metaid="M_MAM00075x" sboTerm="SBO:0000247" id="M_MAM00075x" name="(2R)-pristanoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C40H68N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00075x">
+            <rdf:Description rdf:about="#M_MAM00075x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:20067"/>
@@ -2396,10 +2396,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00076x" sboTerm="SBO:0000247" id="MAM00076x" name="(2R,6R,10R)-trimethyl-hendecanoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C35H58N7O17P3S">
+      <species metaid="M_MAM00076x" sboTerm="SBO:0000247" id="M_MAM00076x" name="(2R,6R,10R)-trimethyl-hendecanoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C35H58N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00076x">
+            <rdf:Description rdf:about="#M_MAM00076x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/CE5936"/>
@@ -2409,10 +2409,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00077x" sboTerm="SBO:0000247" id="MAM00077x" name="(2R,6S,10S)-pristanate" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C19H37O2">
+      <species metaid="M_MAM00077x" sboTerm="SBO:0000247" id="M_MAM00077x" name="(2R,6S,10S)-pristanate" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C19H37O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00077x">
+            <rdf:Description rdf:about="#M_MAM00077x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/CE2416"/>
@@ -2423,10 +2423,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00078x" sboTerm="SBO:0000247" id="MAM00078x" name="(2S)-pristanoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C40H68N7O17P3S">
+      <species metaid="M_MAM00078x" sboTerm="SBO:0000247" id="M_MAM00078x" name="(2S)-pristanoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C40H68N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
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+            <rdf:Description rdf:about="#M_MAM00078x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pristcoa"/>
@@ -2440,10 +2440,10 @@
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-      <species metaid="MAM00079x" sboTerm="SBO:0000247" id="MAM00079x" name="(2S,6R,10R)-trimethyl-(2E)-hendecenoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C35H56N7O17P3S">
+      <species metaid="M_MAM00079x" sboTerm="SBO:0000247" id="M_MAM00079x" name="(2S,6R,10R)-trimethyl-(2E)-hendecenoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C35H56N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00079x">
+            <rdf:Description rdf:about="#M_MAM00079x">
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                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM30996"/>
@@ -2455,10 +2455,10 @@
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-      <species metaid="MAM00080x" sboTerm="SBO:0000247" id="MAM00080x" name="(2S,6R,10R)-trimethyl-hendecanoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C35H58N7O17P3S">
+      <species metaid="M_MAM00080x" sboTerm="SBO:0000247" id="M_MAM00080x" name="(2S,6R,10R)-trimethyl-hendecanoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C35H58N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00080x">
+            <rdf:Description rdf:about="#M_MAM00080x">
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                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM30997"/>
@@ -2470,10 +2470,10 @@
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-      <species metaid="MAM00081m" sboTerm="SBO:0000247" id="MAM00081m" name="(3S)-3-hydroxy-cis,cis-palmito-7,10-dienoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C37H58N7O18P3S">
+      <species metaid="M_MAM00081m" sboTerm="SBO:0000247" id="M_MAM00081m" name="(3S)-3-hydroxy-cis,cis-palmito-7,10-dienoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C37H58N7O18P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00081m">
+            <rdf:Description rdf:about="#M_MAM00081m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM31113"/>
@@ -2485,10 +2485,10 @@
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-      <species metaid="MAM00081x" sboTerm="SBO:0000247" id="MAM00081x" name="(3S)-3-hydroxy-cis,cis-palmito-7,10-dienoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C37H58N7O18P3S">
+      <species metaid="M_MAM00081x" sboTerm="SBO:0000247" id="M_MAM00081x" name="(3S)-3-hydroxy-cis,cis-palmito-7,10-dienoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C37H58N7O18P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00081x">
+            <rdf:Description rdf:about="#M_MAM00081x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM31113"/>
@@ -2500,10 +2500,10 @@
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-      <species metaid="MAM00082m" sboTerm="SBO:0000247" id="MAM00082m" name="(3S)-3-hydroxydodec-cis-6-enoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C33H52N7O18P3S">
+      <species metaid="M_MAM00082m" sboTerm="SBO:0000247" id="M_MAM00082m" name="(3S)-3-hydroxydodec-cis-6-enoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C33H52N7O18P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00082m">
+            <rdf:Description rdf:about="#M_MAM00082m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM31119"/>
@@ -2515,10 +2515,10 @@
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         </annotation>
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-      <species metaid="MAM00082x" sboTerm="SBO:0000247" id="MAM00082x" name="(3S)-3-hydroxydodec-cis-6-enoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C33H52N7O18P3S">
+      <species metaid="M_MAM00082x" sboTerm="SBO:0000247" id="M_MAM00082x" name="(3S)-3-hydroxydodec-cis-6-enoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C33H52N7O18P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00082x">
+            <rdf:Description rdf:about="#M_MAM00082x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM31119"/>
@@ -2530,10 +2530,10 @@
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         </annotation>
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-      <species metaid="MAM00083m" sboTerm="SBO:0000247" id="MAM00083m" name="(3S)-3-hydroxylinoleoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C39H62N7O18P3S">
+      <species metaid="M_MAM00083m" sboTerm="SBO:0000247" id="M_MAM00083m" name="(3S)-3-hydroxylinoleoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C39H62N7O18P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00083m">
+            <rdf:Description rdf:about="#M_MAM00083m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM31120"/>
@@ -2545,10 +2545,10 @@
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         </annotation>
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-      <species metaid="MAM00083x" sboTerm="SBO:0000247" id="MAM00083x" name="(3S)-3-hydroxylinoleoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C39H62N7O18P3S">
+      <species metaid="M_MAM00083x" sboTerm="SBO:0000247" id="M_MAM00083x" name="(3S)-3-hydroxylinoleoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C39H62N7O18P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00083x">
+            <rdf:Description rdf:about="#M_MAM00083x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM31120"/>
@@ -2560,10 +2560,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00084m" sboTerm="SBO:0000247" id="MAM00084m" name="(3S)-citramalyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C26H37N7O20P3S">
+      <species metaid="M_MAM00084m" sboTerm="SBO:0000247" id="M_MAM00084m" name="(3S)-citramalyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C26H37N7O20P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00084m">
+            <rdf:Description rdf:about="#M_MAM00084m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/citmcoa__L"/>
@@ -2580,10 +2580,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00085c" sboTerm="SBO:0000247" id="MAM00085c" name="(3S)-hydroxy-docasa-cis,cis-13,16-dienoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C43H70N7O18P3S">
+      <species metaid="M_MAM00085c" sboTerm="SBO:0000247" id="M_MAM00085c" name="(3S)-hydroxy-docasa-cis,cis-13,16-dienoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C43H70N7O18P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00085c">
+            <rdf:Description rdf:about="#M_MAM00085c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M00085"/>
@@ -2593,10 +2593,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00086c" sboTerm="SBO:0000247" id="MAM00086c" name="(3S)-hydroxy-eicosa-cis,cis,cis-11,14,17-trienoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H64N7O18P3S">
+      <species metaid="M_MAM00086c" sboTerm="SBO:0000247" id="M_MAM00086c" name="(3S)-hydroxy-eicosa-cis,cis,cis-11,14,17-trienoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H64N7O18P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00086c">
+            <rdf:Description rdf:about="#M_MAM00086c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M00086"/>
@@ -2606,10 +2606,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM00087c" sboTerm="SBO:0000247" id="MAM00087c" name="(3S)-hydroxy-eicosa-cis,cis-11,14-dienoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H66N7O18P3S">
+      <species metaid="M_MAM00087c" sboTerm="SBO:0000247" id="M_MAM00087c" name="(3S)-hydroxy-eicosa-cis,cis-11,14-dienoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H66N7O18P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00087c">
+            <rdf:Description rdf:about="#M_MAM00087c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM163965"/>
@@ -2620,10 +2620,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM00088m" sboTerm="SBO:0000247" id="MAM00088m" name="(3Z)-dodecenoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C33H52N7O17P3S">
+      <species metaid="M_MAM00088m" sboTerm="SBO:0000247" id="M_MAM00088m" name="(3Z)-dodecenoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C33H52N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00088m">
+            <rdf:Description rdf:about="#M_MAM00088m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dd3coa"/>
@@ -2639,10 +2639,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM00088x" sboTerm="SBO:0000247" id="MAM00088x" name="(3Z)-dodecenoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C33H52N7O17P3S">
+      <species metaid="M_MAM00088x" sboTerm="SBO:0000247" id="M_MAM00088x" name="(3Z)-dodecenoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C33H52N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00088x">
+            <rdf:Description rdf:about="#M_MAM00088x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dd3coa"/>
@@ -2658,10 +2658,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM00089m" sboTerm="SBO:0000247" id="MAM00089m" name="(3Z,7Z,10Z)-hexadecatrienoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C37H56N7O17P3S">
+      <species metaid="M_MAM00089m" sboTerm="SBO:0000247" id="M_MAM00089m" name="(3Z,7Z,10Z)-hexadecatrienoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C37H56N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00089m">
+            <rdf:Description rdf:about="#M_MAM00089m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/CE2442"/>
@@ -2671,10 +2671,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00089x" sboTerm="SBO:0000247" id="MAM00089x" name="(3Z,7Z,10Z)-hexadecatrienoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C37H56N7O17P3S">
+      <species metaid="M_MAM00089x" sboTerm="SBO:0000247" id="M_MAM00089x" name="(3Z,7Z,10Z)-hexadecatrienoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C37H56N7O17P3S">
         <annotation>
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+            <rdf:Description rdf:about="#M_MAM00089x">
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@@ -2684,10 +2684,10 @@
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+      <species metaid="M_MAM00090x" sboTerm="SBO:0000247" id="M_MAM00090x" name="(4R,8R,12R)-trimethyl-(2E)-tridecenoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C37H60N7O17P3S">
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-            <rdf:Description rdf:about="#MAM00090x">
+            <rdf:Description rdf:about="#M_MAM00090x">
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@@ -2699,10 +2699,10 @@
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+      <species metaid="M_MAM00091m" sboTerm="SBO:0000247" id="M_MAM00091m" name="(4Z,7Z,10Z)-hexadecatrienoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C37H56N7O17P3S">
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-            <rdf:Description rdf:about="#MAM00091m">
+            <rdf:Description rdf:about="#M_MAM00091m">
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@@ -2712,10 +2712,10 @@
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+      <species metaid="M_MAM00091x" sboTerm="SBO:0000247" id="M_MAM00091x" name="(4Z,7Z,10Z)-hexadecatrienoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C37H56N7O17P3S">
         <annotation>
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-            <rdf:Description rdf:about="#MAM00091x">
+            <rdf:Description rdf:about="#M_MAM00091x">
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@@ -2725,10 +2725,10 @@
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+      <species metaid="M_MAM00092c" sboTerm="SBO:0000247" id="M_MAM00092c" name="(4Z,7Z,10Z,13Z,16Z)-docosapentaenoylcarnitine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C29H47NO4">
         <annotation>
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-            <rdf:Description rdf:about="#MAM00092c">
+            <rdf:Description rdf:about="#M_MAM00092c">
               <bqbiol:is>
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                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dcsptn1crn"/>
@@ -2740,10 +2740,10 @@
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+      <species metaid="M_MAM00092m" sboTerm="SBO:0000247" id="M_MAM00092m" name="(4Z,7Z,10Z,13Z,16Z)-docosapentaenoylcarnitine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C29H47NO4">
         <annotation>
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-            <rdf:Description rdf:about="#MAM00092m">
+            <rdf:Description rdf:about="#M_MAM00092m">
               <bqbiol:is>
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                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dcsptn1crn"/>
@@ -2755,10 +2755,10 @@
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-      <species metaid="MAM00092r" sboTerm="SBO:0000247" id="MAM00092r" name="(4Z,7Z,10Z,13Z,16Z)-docosapentaenoylcarnitine" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C29H47NO4">
+      <species metaid="M_MAM00092r" sboTerm="SBO:0000247" id="M_MAM00092r" name="(4Z,7Z,10Z,13Z,16Z)-docosapentaenoylcarnitine" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C29H47NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00092r">
+            <rdf:Description rdf:about="#M_MAM00092r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dcsptn1crn"/>
@@ -2770,10 +2770,10 @@
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         </annotation>
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+      <species metaid="M_MAM00093c" sboTerm="SBO:0000247" id="M_MAM00093c" name="(4Z,7Z,10Z,13Z,16Z)-docosapentaenoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C43H64N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00093c">
+            <rdf:Description rdf:about="#M_MAM00093c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dcsptn1coa"/>
@@ -2788,10 +2788,10 @@
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+      <species metaid="M_MAM00093m" sboTerm="SBO:0000247" id="M_MAM00093m" name="(4Z,7Z,10Z,13Z,16Z)-docosapentaenoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C43H64N7O17P3S">
         <annotation>
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-            <rdf:Description rdf:about="#MAM00093m">
+            <rdf:Description rdf:about="#M_MAM00093m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dcsptn1coa"/>
@@ -2806,10 +2806,10 @@
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-      <species metaid="MAM00093x" sboTerm="SBO:0000247" id="MAM00093x" name="(4Z,7Z,10Z,13Z,16Z)-docosapentaenoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C43H64N7O17P3S">
+      <species metaid="M_MAM00093x" sboTerm="SBO:0000247" id="M_MAM00093x" name="(4Z,7Z,10Z,13Z,16Z)-docosapentaenoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C43H64N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00093x">
+            <rdf:Description rdf:about="#M_MAM00093x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dcsptn1coa"/>
@@ -2824,10 +2824,10 @@
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         </annotation>
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-      <species metaid="MAM00093r" sboTerm="SBO:0000247" id="MAM00093r" name="(4Z,7Z,10Z,13Z,16Z)-docosapentaenoyl-CoA" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C43H64N7O17P3S">
+      <species metaid="M_MAM00093r" sboTerm="SBO:0000247" id="M_MAM00093r" name="(4Z,7Z,10Z,13Z,16Z)-docosapentaenoyl-CoA" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C43H64N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00093r">
+            <rdf:Description rdf:about="#M_MAM00093r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dcsptn1coa"/>
@@ -2842,10 +2842,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM00094c" sboTerm="SBO:0000247" id="MAM00094c" name="(4Z,7Z,10Z,13Z,16Z)-DPA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C22H33O2">
+      <species metaid="M_MAM00094c" sboTerm="SBO:0000247" id="M_MAM00094c" name="(4Z,7Z,10Z,13Z,16Z)-DPA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C22H33O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00094c">
+            <rdf:Description rdf:about="#M_MAM00094c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dcsptn1"/>
@@ -2861,10 +2861,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM00094l" sboTerm="SBO:0000247" id="MAM00094l" name="(4Z,7Z,10Z,13Z,16Z)-DPA" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C22H33O2">
+      <species metaid="M_MAM00094l" sboTerm="SBO:0000247" id="M_MAM00094l" name="(4Z,7Z,10Z,13Z,16Z)-DPA" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C22H33O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00094l">
+            <rdf:Description rdf:about="#M_MAM00094l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dcsptn1"/>
@@ -2880,10 +2880,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM00094r" sboTerm="SBO:0000247" id="MAM00094r" name="(4Z,7Z,10Z,13Z,16Z)-DPA" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C22H33O2">
+      <species metaid="M_MAM00094r" sboTerm="SBO:0000247" id="M_MAM00094r" name="(4Z,7Z,10Z,13Z,16Z)-DPA" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C22H33O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00094r">
+            <rdf:Description rdf:about="#M_MAM00094r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dcsptn1"/>
@@ -2899,10 +2899,10 @@
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         </annotation>
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-      <species metaid="MAM00094e" sboTerm="SBO:0000247" id="MAM00094e" name="(4Z,7Z,10Z,13Z,16Z)-DPA" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C22H33O2">
+      <species metaid="M_MAM00094e" sboTerm="SBO:0000247" id="M_MAM00094e" name="(4Z,7Z,10Z,13Z,16Z)-DPA" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C22H33O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00094e">
+            <rdf:Description rdf:about="#M_MAM00094e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dcsptn1"/>
@@ -2918,10 +2918,10 @@
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         </annotation>
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-      <species metaid="MAM00095c" sboTerm="SBO:0000247" id="MAM00095c" name="(4Z,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C43H62N7O17P3S">
+      <species metaid="M_MAM00095c" sboTerm="SBO:0000247" id="M_MAM00095c" name="(4Z,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C43H62N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00095c">
+            <rdf:Description rdf:about="#M_MAM00095c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/c226coa"/>
@@ -2938,10 +2938,10 @@
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-      <species metaid="MAM00095m" sboTerm="SBO:0000247" id="MAM00095m" name="(4Z,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C43H62N7O17P3S">
+      <species metaid="M_MAM00095m" sboTerm="SBO:0000247" id="M_MAM00095m" name="(4Z,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C43H62N7O17P3S">
         <annotation>
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-            <rdf:Description rdf:about="#MAM00095m">
+            <rdf:Description rdf:about="#M_MAM00095m">
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                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/c226coa"/>
@@ -2958,10 +2958,10 @@
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+      <species metaid="M_MAM00095x" sboTerm="SBO:0000247" id="M_MAM00095x" name="(4Z,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C43H62N7O17P3S">
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           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00095x">
+            <rdf:Description rdf:about="#M_MAM00095x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/c226coa"/>
@@ -2978,10 +2978,10 @@
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-      <species metaid="MAM00095r" sboTerm="SBO:0000247" id="MAM00095r" name="(4Z,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C43H62N7O17P3S">
+      <species metaid="M_MAM00095r" sboTerm="SBO:0000247" id="M_MAM00095r" name="(4Z,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C43H62N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00095r">
+            <rdf:Description rdf:about="#M_MAM00095r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/c226coa"/>
@@ -2998,10 +2998,10 @@
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-      <species metaid="MAM00096c" sboTerm="SBO:0000247" id="MAM00096c" name="(5)ppPur-mRNA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C15H23O22P4R3">
+      <species metaid="M_MAM00096c" sboTerm="SBO:0000247" id="M_MAM00096c" name="(5)ppPur-mRNA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C15H23O22P4R3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00096c">
+            <rdf:Description rdf:about="#M_MAM00096c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C02100"/>
@@ -3013,16 +3013,15 @@
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-      <species metaid="MAM00097e" sboTerm="SBO:0000247" id="MAM00097e" name="(5-L-glutamyl)-L-amino acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C8H13N2O5">
+      <species metaid="M_MAM00097e" sboTerm="SBO:0000247" id="M_MAM00097e" name="(5-L-glutamyl)-L-amino acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C8H13N2O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00097e">
+            <rdf:Description rdf:about="#M_MAM00097e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/gluala"/>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:50619"/>
                   <rdf:li rdf:resource="https://identifiers.org/hmdb/HMDB06248"/>
-                  <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C03740"/>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM59390"/>
                   <rdf:li rdf:resource="https://identifiers.org/pubchem.compound/440103"/>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/gluala"/>
@@ -3032,10 +3031,10 @@
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         </annotation>
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-      <species metaid="MAM00098c" sboTerm="SBO:0000247" id="MAM00098c" name="(5S,6S)-epoxy-(15R)-hydroxy-ETE" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H29O4">
+      <species metaid="M_MAM00098c" sboTerm="SBO:0000247" id="M_MAM00098c" name="(5S,6S)-epoxy-(15R)-hydroxy-ETE" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H29O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00098c">
+            <rdf:Description rdf:about="#M_MAM00098c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM162637"/>
@@ -3046,10 +3045,10 @@
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         </annotation>
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-      <species metaid="MAM00098x" sboTerm="SBO:0000247" id="MAM00098x" name="(5S,6S)-epoxy-(15R)-hydroxy-ETE" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H29O4">
+      <species metaid="M_MAM00098x" sboTerm="SBO:0000247" id="M_MAM00098x" name="(5S,6S)-epoxy-(15R)-hydroxy-ETE" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H29O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00098x">
+            <rdf:Description rdf:about="#M_MAM00098x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM162637"/>
@@ -3060,10 +3059,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM00098r" sboTerm="SBO:0000247" id="MAM00098r" name="(5S,6S)-epoxy-(15R)-hydroxy-ETE" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H29O4">
+      <species metaid="M_MAM00098r" sboTerm="SBO:0000247" id="M_MAM00098r" name="(5S,6S)-epoxy-(15R)-hydroxy-ETE" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H29O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00098r">
+            <rdf:Description rdf:about="#M_MAM00098r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM162637"/>
@@ -3074,10 +3073,10 @@
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         </annotation>
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-      <species metaid="MAM00099m" sboTerm="SBO:0000247" id="MAM00099m" name="(5Z)-dodecenoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C33H52N7O17P3S">
+      <species metaid="M_MAM00099m" sboTerm="SBO:0000247" id="M_MAM00099m" name="(5Z)-dodecenoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C33H52N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00099m">
+            <rdf:Description rdf:about="#M_MAM00099m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM163970"/>
@@ -3089,10 +3088,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00099x" sboTerm="SBO:0000247" id="MAM00099x" name="(5Z)-dodecenoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C33H52N7O17P3S">
+      <species metaid="M_MAM00099x" sboTerm="SBO:0000247" id="M_MAM00099x" name="(5Z)-dodecenoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C33H52N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00099x">
+            <rdf:Description rdf:about="#M_MAM00099x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM163970"/>
@@ -3104,10 +3103,10 @@
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         </annotation>
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-      <species metaid="MAM00100c" sboTerm="SBO:0000247" id="MAM00100c" name="(5Z,8Z,11Z)-eicosatrienoylcarnitine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H47NO4">
+      <species metaid="M_MAM00100c" sboTerm="SBO:0000247" id="M_MAM00100c" name="(5Z,8Z,11Z)-eicosatrienoylcarnitine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H47NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00100c">
+            <rdf:Description rdf:about="#M_MAM00100c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M00100"/>
@@ -3117,10 +3116,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM00100m" sboTerm="SBO:0000247" id="MAM00100m" name="(5Z,8Z,11Z)-eicosatrienoylcarnitine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H47NO4">
+      <species metaid="M_MAM00100m" sboTerm="SBO:0000247" id="M_MAM00100m" name="(5Z,8Z,11Z)-eicosatrienoylcarnitine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H47NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00100m">
+            <rdf:Description rdf:about="#M_MAM00100m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M00100"/>
@@ -3130,10 +3129,10 @@
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         </annotation>
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-      <species metaid="MAM00100r" sboTerm="SBO:0000247" id="MAM00100r" name="(5Z,8Z,11Z)-eicosatrienoylcarnitine" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H47NO4">
+      <species metaid="M_MAM00100r" sboTerm="SBO:0000247" id="M_MAM00100r" name="(5Z,8Z,11Z)-eicosatrienoylcarnitine" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H47NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00100r">
+            <rdf:Description rdf:about="#M_MAM00100r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M00100"/>
@@ -3143,10 +3142,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM00101c" sboTerm="SBO:0000247" id="MAM00101c" name="(5Z,8Z,11Z)-eicosatrienoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H64N7O17P3S">
+      <species metaid="M_MAM00101c" sboTerm="SBO:0000247" id="M_MAM00101c" name="(5Z,8Z,11Z)-eicosatrienoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H64N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00101c">
+            <rdf:Description rdf:about="#M_MAM00101c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/LMFA07050062"/>
@@ -3159,10 +3158,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM00101m" sboTerm="SBO:0000247" id="MAM00101m" name="(5Z,8Z,11Z)-eicosatrienoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H64N7O17P3S">
+      <species metaid="M_MAM00101m" sboTerm="SBO:0000247" id="M_MAM00101m" name="(5Z,8Z,11Z)-eicosatrienoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H64N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00101m">
+            <rdf:Description rdf:about="#M_MAM00101m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/LMFA07050062"/>
@@ -3175,10 +3174,10 @@
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         </annotation>
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-      <species metaid="MAM00101r" sboTerm="SBO:0000247" id="MAM00101r" name="(5Z,8Z,11Z)-eicosatrienoyl-CoA" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H64N7O17P3S">
+      <species metaid="M_MAM00101r" sboTerm="SBO:0000247" id="M_MAM00101r" name="(5Z,8Z,11Z)-eicosatrienoyl-CoA" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H64N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00101r">
+            <rdf:Description rdf:about="#M_MAM00101r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/LMFA07050062"/>
@@ -3191,10 +3190,10 @@
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         </annotation>
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-      <species metaid="MAM00102c" sboTerm="SBO:0000247" id="MAM00102c" name="(5Z,8Z,11Z,14Z,17Z)-eicosapentaenoylcarnitine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H43NO4">
+      <species metaid="M_MAM00102c" sboTerm="SBO:0000247" id="M_MAM00102c" name="(5Z,8Z,11Z,14Z,17Z)-eicosapentaenoylcarnitine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H43NO4">
         <annotation>
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-            <rdf:Description rdf:about="#MAM00102c">
+            <rdf:Description rdf:about="#M_MAM00102c">
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@@ -3206,10 +3205,10 @@
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-      <species metaid="MAM00102m" sboTerm="SBO:0000247" id="MAM00102m" name="(5Z,8Z,11Z,14Z,17Z)-eicosapentaenoylcarnitine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H43NO4">
+      <species metaid="M_MAM00102m" sboTerm="SBO:0000247" id="M_MAM00102m" name="(5Z,8Z,11Z,14Z,17Z)-eicosapentaenoylcarnitine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H43NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00102m">
+            <rdf:Description rdf:about="#M_MAM00102m">
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                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/tmndnccrn"/>
@@ -3221,10 +3220,10 @@
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-      <species metaid="MAM00102r" sboTerm="SBO:0000247" id="MAM00102r" name="(5Z,8Z,11Z,14Z,17Z)-eicosapentaenoylcarnitine" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H43NO4">
+      <species metaid="M_MAM00102r" sboTerm="SBO:0000247" id="M_MAM00102r" name="(5Z,8Z,11Z,14Z,17Z)-eicosapentaenoylcarnitine" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H43NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00102r">
+            <rdf:Description rdf:about="#M_MAM00102r">
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                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/tmndnccrn"/>
@@ -3236,10 +3235,10 @@
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-      <species metaid="MAM00103c" sboTerm="SBO:0000247" id="MAM00103c" name="(5Z,8Z,11Z,14Z,17Z)-eicosapentaenoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H60N7O17P3S">
+      <species metaid="M_MAM00103c" sboTerm="SBO:0000247" id="M_MAM00103c" name="(5Z,8Z,11Z,14Z,17Z)-eicosapentaenoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H60N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00103c">
+            <rdf:Description rdf:about="#M_MAM00103c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/tmndnccoa"/>
@@ -3255,10 +3254,10 @@
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-      <species metaid="MAM00103m" sboTerm="SBO:0000247" id="MAM00103m" name="(5Z,8Z,11Z,14Z,17Z)-eicosapentaenoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H60N7O17P3S">
+      <species metaid="M_MAM00103m" sboTerm="SBO:0000247" id="M_MAM00103m" name="(5Z,8Z,11Z,14Z,17Z)-eicosapentaenoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H60N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00103m">
+            <rdf:Description rdf:about="#M_MAM00103m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/tmndnccoa"/>
@@ -3274,10 +3273,10 @@
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-      <species metaid="MAM00103r" sboTerm="SBO:0000247" id="MAM00103r" name="(5Z,8Z,11Z,14Z,17Z)-eicosapentaenoyl-CoA" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H60N7O17P3S">
+      <species metaid="M_MAM00103r" sboTerm="SBO:0000247" id="M_MAM00103r" name="(5Z,8Z,11Z,14Z,17Z)-eicosapentaenoyl-CoA" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H60N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00103r">
+            <rdf:Description rdf:about="#M_MAM00103r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/tmndnccoa"/>
@@ -3293,10 +3292,10 @@
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-      <species metaid="MAM00104c" sboTerm="SBO:0000247" id="MAM00104c" name="(6Z,9Z)-octadecadienoic acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H31O2">
+      <species metaid="M_MAM00104c" sboTerm="SBO:0000247" id="M_MAM00104c" name="(6Z,9Z)-octadecadienoic acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H31O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00104c">
+            <rdf:Description rdf:about="#M_MAM00104c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/lneldc"/>
@@ -3310,10 +3309,10 @@
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         </annotation>
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-      <species metaid="MAM00104l" sboTerm="SBO:0000247" id="MAM00104l" name="(6Z,9Z)-octadecadienoic acid" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H31O2">
+      <species metaid="M_MAM00104l" sboTerm="SBO:0000247" id="M_MAM00104l" name="(6Z,9Z)-octadecadienoic acid" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H31O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00104l">
+            <rdf:Description rdf:about="#M_MAM00104l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/lneldc"/>
@@ -3327,10 +3326,10 @@
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         </annotation>
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-      <species metaid="MAM00104r" sboTerm="SBO:0000247" id="MAM00104r" name="(6Z,9Z)-octadecadienoic acid" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H31O2">
+      <species metaid="M_MAM00104r" sboTerm="SBO:0000247" id="M_MAM00104r" name="(6Z,9Z)-octadecadienoic acid" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H31O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00104r">
+            <rdf:Description rdf:about="#M_MAM00104r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/lneldc"/>
@@ -3344,10 +3343,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM00104e" sboTerm="SBO:0000247" id="MAM00104e" name="(6Z,9Z)-octadecadienoic acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H31O2">
+      <species metaid="M_MAM00104e" sboTerm="SBO:0000247" id="M_MAM00104e" name="(6Z,9Z)-octadecadienoic acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H31O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00104e">
+            <rdf:Description rdf:about="#M_MAM00104e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/lneldc"/>
@@ -3361,10 +3360,10 @@
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         </annotation>
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-      <species metaid="MAM00105c" sboTerm="SBO:0000247" id="MAM00105c" name="(6Z,9Z)-octadecadienoylcarnitine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H45NO4">
+      <species metaid="M_MAM00105c" sboTerm="SBO:0000247" id="M_MAM00105c" name="(6Z,9Z)-octadecadienoylcarnitine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H45NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00105c">
+            <rdf:Description rdf:about="#M_MAM00105c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/lneldccrn"/>
@@ -3378,10 +3377,10 @@
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         </annotation>
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-      <species metaid="MAM00105m" sboTerm="SBO:0000247" id="MAM00105m" name="(6Z,9Z)-octadecadienoylcarnitine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H45NO4">
+      <species metaid="M_MAM00105m" sboTerm="SBO:0000247" id="M_MAM00105m" name="(6Z,9Z)-octadecadienoylcarnitine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H45NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00105m">
+            <rdf:Description rdf:about="#M_MAM00105m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/lneldccrn"/>
@@ -3395,10 +3394,10 @@
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-      <species metaid="MAM00105r" sboTerm="SBO:0000247" id="MAM00105r" name="(6Z,9Z)-octadecadienoylcarnitine" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H45NO4">
+      <species metaid="M_MAM00105r" sboTerm="SBO:0000247" id="M_MAM00105r" name="(6Z,9Z)-octadecadienoylcarnitine" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H45NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00105r">
+            <rdf:Description rdf:about="#M_MAM00105r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/lneldccrn"/>
@@ -3412,10 +3411,10 @@
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         </annotation>
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-      <species metaid="MAM00106c" sboTerm="SBO:0000247" id="MAM00106c" name="(6Z,9Z)-octadecadienoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C39H62N7O17P3S">
+      <species metaid="M_MAM00106c" sboTerm="SBO:0000247" id="M_MAM00106c" name="(6Z,9Z)-octadecadienoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C39H62N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00106c">
+            <rdf:Description rdf:about="#M_MAM00106c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/lneldccoa"/>
@@ -3428,10 +3427,10 @@
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         </annotation>
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-      <species metaid="MAM00106m" sboTerm="SBO:0000247" id="MAM00106m" name="(6Z,9Z)-octadecadienoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C39H62N7O17P3S">
+      <species metaid="M_MAM00106m" sboTerm="SBO:0000247" id="M_MAM00106m" name="(6Z,9Z)-octadecadienoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C39H62N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00106m">
+            <rdf:Description rdf:about="#M_MAM00106m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/lneldccoa"/>
@@ -3444,10 +3443,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM00106r" sboTerm="SBO:0000247" id="MAM00106r" name="(6Z,9Z)-octadecadienoyl-CoA" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C39H62N7O17P3S">
+      <species metaid="M_MAM00106r" sboTerm="SBO:0000247" id="M_MAM00106r" name="(6Z,9Z)-octadecadienoyl-CoA" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C39H62N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00106r">
+            <rdf:Description rdf:about="#M_MAM00106r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/lneldccoa"/>
@@ -3460,10 +3459,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00107c" sboTerm="SBO:0000247" id="MAM00107c" name="(6Z,9Z,12Z,15Z)-octadecatetraenoylcarnitine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H41NO4">
+      <species metaid="M_MAM00107c" sboTerm="SBO:0000247" id="M_MAM00107c" name="(6Z,9Z,12Z,15Z)-octadecatetraenoylcarnitine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H41NO4">
         <annotation>
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+            <rdf:Description rdf:about="#M_MAM00107c">
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@@ -3476,10 +3475,10 @@
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+      <species metaid="M_MAM00107m" sboTerm="SBO:0000247" id="M_MAM00107m" name="(6Z,9Z,12Z,15Z)-octadecatetraenoylcarnitine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H41NO4">
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+            <rdf:Description rdf:about="#M_MAM00107m">
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@@ -3492,10 +3491,10 @@
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+      <species metaid="M_MAM00107r" sboTerm="SBO:0000247" id="M_MAM00107r" name="(6Z,9Z,12Z,15Z)-octadecatetraenoylcarnitine" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H41NO4">
         <annotation>
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-            <rdf:Description rdf:about="#MAM00107r">
+            <rdf:Description rdf:about="#M_MAM00107r">
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@@ -3508,10 +3507,10 @@
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+      <species metaid="M_MAM00108c" sboTerm="SBO:0000247" id="M_MAM00108c" name="(6Z,9Z,12Z,15Z)-octadecatetraenoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C39H58N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00108c">
+            <rdf:Description rdf:about="#M_MAM00108c">
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@@ -3527,10 +3526,10 @@
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+      <species metaid="M_MAM00108m" sboTerm="SBO:0000247" id="M_MAM00108m" name="(6Z,9Z,12Z,15Z)-octadecatetraenoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C39H58N7O17P3S">
         <annotation>
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-            <rdf:Description rdf:about="#MAM00108m">
+            <rdf:Description rdf:about="#M_MAM00108m">
               <bqbiol:is>
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                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/strdnccoa"/>
@@ -3546,10 +3545,10 @@
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+      <species metaid="M_MAM00108r" sboTerm="SBO:0000247" id="M_MAM00108r" name="(6Z,9Z,12Z,15Z)-octadecatetraenoyl-CoA" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C39H58N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00108r">
+            <rdf:Description rdf:about="#M_MAM00108r">
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                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/strdnccoa"/>
@@ -3565,10 +3564,10 @@
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-      <species metaid="MAM00109c" sboTerm="SBO:0000247" id="MAM00109c" name="(6Z,9Z,12Z,15Z,18Z)-tetracosapentaenoylcarnitine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C31H51NO4">
+      <species metaid="M_MAM00109c" sboTerm="SBO:0000247" id="M_MAM00109c" name="(6Z,9Z,12Z,15Z,18Z)-tetracosapentaenoylcarnitine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C31H51NO4">
         <annotation>
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-            <rdf:Description rdf:about="#MAM00109c">
+            <rdf:Description rdf:about="#M_MAM00109c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/tetpent6crn"/>
@@ -3581,10 +3580,10 @@
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-      <species metaid="MAM00109r" sboTerm="SBO:0000247" id="MAM00109r" name="(6Z,9Z,12Z,15Z,18Z)-tetracosapentaenoylcarnitine" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C31H51NO4">
+      <species metaid="M_MAM00109r" sboTerm="SBO:0000247" id="M_MAM00109r" name="(6Z,9Z,12Z,15Z,18Z)-tetracosapentaenoylcarnitine" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C31H51NO4">
         <annotation>
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-            <rdf:Description rdf:about="#MAM00109r">
+            <rdf:Description rdf:about="#M_MAM00109r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/tetpent6crn"/>
@@ -3597,10 +3596,10 @@
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-      <species metaid="MAM00110c" sboTerm="SBO:0000247" id="MAM00110c" name="(6Z,9Z,12Z,15Z,18Z)-tetracosapentaenoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C45H68N7O17P3S">
+      <species metaid="M_MAM00110c" sboTerm="SBO:0000247" id="M_MAM00110c" name="(6Z,9Z,12Z,15Z,18Z)-tetracosapentaenoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C45H68N7O17P3S">
         <annotation>
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-            <rdf:Description rdf:about="#MAM00110c">
+            <rdf:Description rdf:about="#M_MAM00110c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/tetpent6coa"/>
@@ -3616,10 +3615,10 @@
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         </annotation>
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-      <species metaid="MAM00110x" sboTerm="SBO:0000247" id="MAM00110x" name="(6Z,9Z,12Z,15Z,18Z)-tetracosapentaenoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C45H68N7O17P3S">
+      <species metaid="M_MAM00110x" sboTerm="SBO:0000247" id="M_MAM00110x" name="(6Z,9Z,12Z,15Z,18Z)-tetracosapentaenoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C45H68N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00110x">
+            <rdf:Description rdf:about="#M_MAM00110x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/tetpent6coa"/>
@@ -3635,10 +3634,10 @@
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         </annotation>
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-      <species metaid="MAM00110r" sboTerm="SBO:0000247" id="MAM00110r" name="(6Z,9Z,12Z,15Z,18Z)-tetracosapentaenoyl-CoA" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C45H68N7O17P3S">
+      <species metaid="M_MAM00110r" sboTerm="SBO:0000247" id="M_MAM00110r" name="(6Z,9Z,12Z,15Z,18Z)-tetracosapentaenoyl-CoA" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C45H68N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00110r">
+            <rdf:Description rdf:about="#M_MAM00110r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/tetpent6coa"/>
@@ -3654,10 +3653,10 @@
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         </annotation>
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-      <species metaid="MAM00111c" sboTerm="SBO:0000247" id="MAM00111c" name="(6Z,9Z,12Z,15Z,18Z)-TPA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H37O2">
+      <species metaid="M_MAM00111c" sboTerm="SBO:0000247" id="M_MAM00111c" name="(6Z,9Z,12Z,15Z,18Z)-TPA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H37O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00111c">
+            <rdf:Description rdf:about="#M_MAM00111c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/tetpent6"/>
@@ -3671,10 +3670,10 @@
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-      <species metaid="MAM00111l" sboTerm="SBO:0000247" id="MAM00111l" name="(6Z,9Z,12Z,15Z,18Z)-TPA" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H37O2">
+      <species metaid="M_MAM00111l" sboTerm="SBO:0000247" id="M_MAM00111l" name="(6Z,9Z,12Z,15Z,18Z)-TPA" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H37O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00111l">
+            <rdf:Description rdf:about="#M_MAM00111l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/tetpent6"/>
@@ -3688,10 +3687,10 @@
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-      <species metaid="MAM00111r" sboTerm="SBO:0000247" id="MAM00111r" name="(6Z,9Z,12Z,15Z,18Z)-TPA" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H37O2">
+      <species metaid="M_MAM00111r" sboTerm="SBO:0000247" id="M_MAM00111r" name="(6Z,9Z,12Z,15Z,18Z)-TPA" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H37O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00111r">
+            <rdf:Description rdf:about="#M_MAM00111r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/tetpent6"/>
@@ -3705,10 +3704,10 @@
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         </annotation>
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-      <species metaid="MAM00111e" sboTerm="SBO:0000247" id="MAM00111e" name="(6Z,9Z,12Z,15Z,18Z)-TPA" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H37O2">
+      <species metaid="M_MAM00111e" sboTerm="SBO:0000247" id="M_MAM00111e" name="(6Z,9Z,12Z,15Z,18Z)-TPA" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H37O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00111e">
+            <rdf:Description rdf:about="#M_MAM00111e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/tetpent6"/>
@@ -3722,10 +3721,10 @@
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-      <species metaid="MAM00112c" sboTerm="SBO:0000247" id="MAM00112c" name="(6Z,9Z,12Z,15Z,18Z,21Z)-tetracosahexaenoylcarnitine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C31H49NO4">
+      <species metaid="M_MAM00112c" sboTerm="SBO:0000247" id="M_MAM00112c" name="(6Z,9Z,12Z,15Z,18Z,21Z)-tetracosahexaenoylcarnitine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C31H49NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00112c">
+            <rdf:Description rdf:about="#M_MAM00112c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M00112"/>
@@ -3735,10 +3734,10 @@
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-      <species metaid="MAM00112r" sboTerm="SBO:0000247" id="MAM00112r" name="(6Z,9Z,12Z,15Z,18Z,21Z)-tetracosahexaenoylcarnitine" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C31H49NO4">
+      <species metaid="M_MAM00112r" sboTerm="SBO:0000247" id="M_MAM00112r" name="(6Z,9Z,12Z,15Z,18Z,21Z)-tetracosahexaenoylcarnitine" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C31H49NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00112r">
+            <rdf:Description rdf:about="#M_MAM00112r">
               <bqbiol:is>
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                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M00112"/>
@@ -3748,10 +3747,10 @@
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-      <species metaid="MAM00113c" sboTerm="SBO:0000247" id="MAM00113c" name="(6Z,9Z,12Z,15Z,18Z,21Z)-tetracosahexaenoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C45H66N7O17P3S">
+      <species metaid="M_MAM00113c" sboTerm="SBO:0000247" id="M_MAM00113c" name="(6Z,9Z,12Z,15Z,18Z,21Z)-tetracosahexaenoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C45H66N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00113c">
+            <rdf:Description rdf:about="#M_MAM00113c">
               <bqbiol:is>
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                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/tethex3coa"/>
@@ -3767,10 +3766,10 @@
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-      <species metaid="MAM00113x" sboTerm="SBO:0000247" id="MAM00113x" name="(6Z,9Z,12Z,15Z,18Z,21Z)-tetracosahexaenoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C45H66N7O17P3S">
+      <species metaid="M_MAM00113x" sboTerm="SBO:0000247" id="M_MAM00113x" name="(6Z,9Z,12Z,15Z,18Z,21Z)-tetracosahexaenoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C45H66N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00113x">
+            <rdf:Description rdf:about="#M_MAM00113x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/tethex3coa"/>
@@ -3786,10 +3785,10 @@
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-      <species metaid="MAM00113r" sboTerm="SBO:0000247" id="MAM00113r" name="(6Z,9Z,12Z,15Z,18Z,21Z)-tetracosahexaenoyl-CoA" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C45H66N7O17P3S">
+      <species metaid="M_MAM00113r" sboTerm="SBO:0000247" id="M_MAM00113r" name="(6Z,9Z,12Z,15Z,18Z,21Z)-tetracosahexaenoyl-CoA" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C45H66N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00113r">
+            <rdf:Description rdf:about="#M_MAM00113r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/tethex3coa"/>
@@ -3805,10 +3804,10 @@
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+      <species metaid="M_MAM00114c" sboTerm="SBO:0000247" id="M_MAM00114c" name="(6Z,9Z,12Z,15Z,18Z,21Z)-THA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H35O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00114c">
+            <rdf:Description rdf:about="#M_MAM00114c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/tethex3"/>
@@ -3825,10 +3824,10 @@
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-      <species metaid="MAM00114l" sboTerm="SBO:0000247" id="MAM00114l" name="(6Z,9Z,12Z,15Z,18Z,21Z)-THA" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H35O2">
+      <species metaid="M_MAM00114l" sboTerm="SBO:0000247" id="M_MAM00114l" name="(6Z,9Z,12Z,15Z,18Z,21Z)-THA" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H35O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00114l">
+            <rdf:Description rdf:about="#M_MAM00114l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/tethex3"/>
@@ -3845,10 +3844,10 @@
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         </annotation>
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-      <species metaid="MAM00114r" sboTerm="SBO:0000247" id="MAM00114r" name="(6Z,9Z,12Z,15Z,18Z,21Z)-THA" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H35O2">
+      <species metaid="M_MAM00114r" sboTerm="SBO:0000247" id="M_MAM00114r" name="(6Z,9Z,12Z,15Z,18Z,21Z)-THA" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H35O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00114r">
+            <rdf:Description rdf:about="#M_MAM00114r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/tethex3"/>
@@ -3865,10 +3864,10 @@
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         </annotation>
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+      <species metaid="M_MAM00114e" sboTerm="SBO:0000247" id="M_MAM00114e" name="(6Z,9Z,12Z,15Z,18Z,21Z)-THA" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H35O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00114e">
+            <rdf:Description rdf:about="#M_MAM00114e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/tethex3"/>
@@ -3885,10 +3884,10 @@
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         </annotation>
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-      <species metaid="MAM00115c" sboTerm="SBO:0000247" id="MAM00115c" name="(7Z)-octadecenoic acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H33O2">
+      <species metaid="M_MAM00115c" sboTerm="SBO:0000247" id="M_MAM00115c" name="(7Z)-octadecenoic acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H33O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00115c">
+            <rdf:Description rdf:about="#M_MAM00115c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/LMFA01030068"/>
@@ -3901,10 +3900,10 @@
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-      <species metaid="MAM00115l" sboTerm="SBO:0000247" id="MAM00115l" name="(7Z)-octadecenoic acid" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H33O2">
+      <species metaid="M_MAM00115l" sboTerm="SBO:0000247" id="M_MAM00115l" name="(7Z)-octadecenoic acid" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H33O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00115l">
+            <rdf:Description rdf:about="#M_MAM00115l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/LMFA01030068"/>
@@ -3917,10 +3916,10 @@
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         </annotation>
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-      <species metaid="MAM00115r" sboTerm="SBO:0000247" id="MAM00115r" name="(7Z)-octadecenoic acid" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H33O2">
+      <species metaid="M_MAM00115r" sboTerm="SBO:0000247" id="M_MAM00115r" name="(7Z)-octadecenoic acid" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H33O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00115r">
+            <rdf:Description rdf:about="#M_MAM00115r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/LMFA01030068"/>
@@ -3933,10 +3932,10 @@
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-      <species metaid="MAM00115e" sboTerm="SBO:0000247" id="MAM00115e" name="(7Z)-octadecenoic acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H33O2">
+      <species metaid="M_MAM00115e" sboTerm="SBO:0000247" id="M_MAM00115e" name="(7Z)-octadecenoic acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H33O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00115e">
+            <rdf:Description rdf:about="#M_MAM00115e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/LMFA01030068"/>
@@ -3949,10 +3948,10 @@
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-      <species metaid="MAM00116c" sboTerm="SBO:0000247" id="MAM00116c" name="(7Z)-octadecenoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C39H64N7O17P3S">
+      <species metaid="M_MAM00116c" sboTerm="SBO:0000247" id="M_MAM00116c" name="(7Z)-octadecenoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C39H64N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00116c">
+            <rdf:Description rdf:about="#M_MAM00116c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M00116"/>
@@ -3962,10 +3961,10 @@
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-      <species metaid="MAM00116m" sboTerm="SBO:0000247" id="MAM00116m" name="(7Z)-octadecenoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C39H64N7O17P3S">
+      <species metaid="M_MAM00116m" sboTerm="SBO:0000247" id="M_MAM00116m" name="(7Z)-octadecenoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C39H64N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00116m">
+            <rdf:Description rdf:about="#M_MAM00116m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M00116"/>
@@ -3975,10 +3974,10 @@
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-      <species metaid="MAM00116r" sboTerm="SBO:0000247" id="MAM00116r" name="(7Z)-octadecenoyl-CoA" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C39H64N7O17P3S">
+      <species metaid="M_MAM00116r" sboTerm="SBO:0000247" id="M_MAM00116r" name="(7Z)-octadecenoyl-CoA" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C39H64N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00116r">
+            <rdf:Description rdf:about="#M_MAM00116r">
               <bqbiol:is>
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                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M00116"/>
@@ -3988,10 +3987,10 @@
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-      <species metaid="MAM00117c" sboTerm="SBO:0000247" id="MAM00117c" name="(7Z)-tetradecenoic acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C14H25O2">
+      <species metaid="M_MAM00117c" sboTerm="SBO:0000247" id="M_MAM00117c" name="(7Z)-tetradecenoic acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C14H25O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00117c">
+            <rdf:Description rdf:about="#M_MAM00117c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:53206"/>
@@ -4004,10 +4003,10 @@
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-      <species metaid="MAM00117l" sboTerm="SBO:0000247" id="MAM00117l" name="(7Z)-tetradecenoic acid" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C14H25O2">
+      <species metaid="M_MAM00117l" sboTerm="SBO:0000247" id="M_MAM00117l" name="(7Z)-tetradecenoic acid" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C14H25O2">
         <annotation>
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-            <rdf:Description rdf:about="#MAM00117l">
+            <rdf:Description rdf:about="#M_MAM00117l">
               <bqbiol:is>
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@@ -4020,10 +4019,10 @@
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+      <species metaid="M_MAM00117r" sboTerm="SBO:0000247" id="M_MAM00117r" name="(7Z)-tetradecenoic acid" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C14H25O2">
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+            <rdf:Description rdf:about="#M_MAM00117r">
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@@ -4036,10 +4035,10 @@
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+      <species metaid="M_MAM00117e" sboTerm="SBO:0000247" id="M_MAM00117e" name="(7Z)-tetradecenoic acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C14H25O2">
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-            <rdf:Description rdf:about="#MAM00117e">
+            <rdf:Description rdf:about="#M_MAM00117e">
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@@ -4052,10 +4051,10 @@
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+      <species metaid="M_MAM00118c" sboTerm="SBO:0000247" id="M_MAM00118c" name="(7Z)-tetradecenoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C35H56N7O17P3S">
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-            <rdf:Description rdf:about="#MAM00118c">
+            <rdf:Description rdf:about="#M_MAM00118c">
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@@ -4068,10 +4067,10 @@
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+      <species metaid="M_MAM00118m" sboTerm="SBO:0000247" id="M_MAM00118m" name="(7Z)-tetradecenoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C35H56N7O17P3S">
         <annotation>
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-            <rdf:Description rdf:about="#MAM00118m">
+            <rdf:Description rdf:about="#M_MAM00118m">
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@@ -4084,10 +4083,10 @@
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+      <species metaid="M_MAM00118x" sboTerm="SBO:0000247" id="M_MAM00118x" name="(7Z)-tetradecenoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C35H56N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00118x">
+            <rdf:Description rdf:about="#M_MAM00118x">
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                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM163972"/>
@@ -4100,10 +4099,10 @@
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+      <species metaid="M_MAM00118r" sboTerm="SBO:0000247" id="M_MAM00118r" name="(7Z)-tetradecenoyl-CoA" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C35H56N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00118r">
+            <rdf:Description rdf:about="#M_MAM00118r">
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                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM163972"/>
@@ -4116,10 +4115,10 @@
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+      <species metaid="M_MAM00119c" sboTerm="SBO:0000247" id="M_MAM00119c" name="(7Z,10Z,13Z,16Z)-docosatetraenoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C43H66N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00119c">
+            <rdf:Description rdf:about="#M_MAM00119c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/adrncoa"/>
@@ -4134,10 +4133,10 @@
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+      <species metaid="M_MAM00119m" sboTerm="SBO:0000247" id="M_MAM00119m" name="(7Z,10Z,13Z,16Z)-docosatetraenoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C43H66N7O17P3S">
         <annotation>
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-            <rdf:Description rdf:about="#MAM00119m">
+            <rdf:Description rdf:about="#M_MAM00119m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/adrncoa"/>
@@ -4152,10 +4151,10 @@
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-      <species metaid="MAM00119r" sboTerm="SBO:0000247" id="MAM00119r" name="(7Z,10Z,13Z,16Z)-docosatetraenoyl-CoA" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C43H66N7O17P3S">
+      <species metaid="M_MAM00119r" sboTerm="SBO:0000247" id="M_MAM00119r" name="(7Z,10Z,13Z,16Z)-docosatetraenoyl-CoA" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C43H66N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00119r">
+            <rdf:Description rdf:about="#M_MAM00119r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/adrncoa"/>
@@ -4170,10 +4169,10 @@
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-      <species metaid="MAM00120c" sboTerm="SBO:0000247" id="MAM00120c" name="(7Z,10Z,13Z,16Z,19Z)-docosapentaenoylcarnitine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C29H47NO4">
+      <species metaid="M_MAM00120c" sboTerm="SBO:0000247" id="M_MAM00120c" name="(7Z,10Z,13Z,16Z,19Z)-docosapentaenoylcarnitine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C29H47NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00120c">
+            <rdf:Description rdf:about="#M_MAM00120c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/clpndcrn"/>
@@ -4185,10 +4184,10 @@
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         </annotation>
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-      <species metaid="MAM00120m" sboTerm="SBO:0000247" id="MAM00120m" name="(7Z,10Z,13Z,16Z,19Z)-docosapentaenoylcarnitine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C29H47NO4">
+      <species metaid="M_MAM00120m" sboTerm="SBO:0000247" id="M_MAM00120m" name="(7Z,10Z,13Z,16Z,19Z)-docosapentaenoylcarnitine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C29H47NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00120m">
+            <rdf:Description rdf:about="#M_MAM00120m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/clpndcrn"/>
@@ -4200,10 +4199,10 @@
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-      <species metaid="MAM00120r" sboTerm="SBO:0000247" id="MAM00120r" name="(7Z,10Z,13Z,16Z,19Z)-docosapentaenoylcarnitine" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C29H47NO4">
+      <species metaid="M_MAM00120r" sboTerm="SBO:0000247" id="M_MAM00120r" name="(7Z,10Z,13Z,16Z,19Z)-docosapentaenoylcarnitine" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C29H47NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00120r">
+            <rdf:Description rdf:about="#M_MAM00120r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/clpndcrn"/>
@@ -4215,10 +4214,10 @@
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         </annotation>
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-      <species metaid="MAM00121c" sboTerm="SBO:0000247" id="MAM00121c" name="(7Z,10Z,13Z,16Z,19Z)-docosapentaenoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C43H64N7O17P3S">
+      <species metaid="M_MAM00121c" sboTerm="SBO:0000247" id="M_MAM00121c" name="(7Z,10Z,13Z,16Z,19Z)-docosapentaenoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C43H64N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00121c">
+            <rdf:Description rdf:about="#M_MAM00121c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/clpndcoa"/>
@@ -4236,10 +4235,10 @@
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-      <species metaid="MAM00121m" sboTerm="SBO:0000247" id="MAM00121m" name="(7Z,10Z,13Z,16Z,19Z)-docosapentaenoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C43H64N7O17P3S">
+      <species metaid="M_MAM00121m" sboTerm="SBO:0000247" id="M_MAM00121m" name="(7Z,10Z,13Z,16Z,19Z)-docosapentaenoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C43H64N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00121m">
+            <rdf:Description rdf:about="#M_MAM00121m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/clpndcoa"/>
@@ -4257,10 +4256,10 @@
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-      <species metaid="MAM00121r" sboTerm="SBO:0000247" id="MAM00121r" name="(7Z,10Z,13Z,16Z,19Z)-docosapentaenoyl-CoA" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C43H64N7O17P3S">
+      <species metaid="M_MAM00121r" sboTerm="SBO:0000247" id="M_MAM00121r" name="(7Z,10Z,13Z,16Z,19Z)-docosapentaenoyl-CoA" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C43H64N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00121r">
+            <rdf:Description rdf:about="#M_MAM00121r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/clpndcoa"/>
@@ -4278,10 +4277,10 @@
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         </annotation>
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-      <species metaid="MAM00122c" sboTerm="SBO:0000247" id="MAM00122c" name="(8Z,11Z)-eicosadienoylcarnitine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H49NO4">
+      <species metaid="M_MAM00122c" sboTerm="SBO:0000247" id="M_MAM00122c" name="(8Z,11Z)-eicosadienoylcarnitine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H49NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00122c">
+            <rdf:Description rdf:about="#M_MAM00122c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M00122"/>
@@ -4291,10 +4290,10 @@
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         </annotation>
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-      <species metaid="MAM00122m" sboTerm="SBO:0000247" id="MAM00122m" name="(8Z,11Z)-eicosadienoylcarnitine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H49NO4">
+      <species metaid="M_MAM00122m" sboTerm="SBO:0000247" id="M_MAM00122m" name="(8Z,11Z)-eicosadienoylcarnitine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H49NO4">
         <annotation>
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-            <rdf:Description rdf:about="#MAM00122m">
+            <rdf:Description rdf:about="#M_MAM00122m">
               <bqbiol:is>
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                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M00122"/>
@@ -4304,10 +4303,10 @@
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-      <species metaid="MAM00122r" sboTerm="SBO:0000247" id="MAM00122r" name="(8Z,11Z)-eicosadienoylcarnitine" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H49NO4">
+      <species metaid="M_MAM00122r" sboTerm="SBO:0000247" id="M_MAM00122r" name="(8Z,11Z)-eicosadienoylcarnitine" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H49NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00122r">
+            <rdf:Description rdf:about="#M_MAM00122r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M00122"/>
@@ -4317,10 +4316,10 @@
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-      <species metaid="MAM00123c" sboTerm="SBO:0000247" id="MAM00123c" name="(8Z,11Z)-eicosadienoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H66N7O17P3S">
+      <species metaid="M_MAM00123c" sboTerm="SBO:0000247" id="M_MAM00123c" name="(8Z,11Z)-eicosadienoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H66N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00123c">
+            <rdf:Description rdf:about="#M_MAM00123c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/LMFA07050061"/>
@@ -4333,10 +4332,10 @@
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-      <species metaid="MAM00123m" sboTerm="SBO:0000247" id="MAM00123m" name="(8Z,11Z)-eicosadienoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H66N7O17P3S">
+      <species metaid="M_MAM00123m" sboTerm="SBO:0000247" id="M_MAM00123m" name="(8Z,11Z)-eicosadienoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H66N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00123m">
+            <rdf:Description rdf:about="#M_MAM00123m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/LMFA07050061"/>
@@ -4349,10 +4348,10 @@
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-      <species metaid="MAM00123r" sboTerm="SBO:0000247" id="MAM00123r" name="(8Z,11Z)-eicosadienoyl-CoA" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H66N7O17P3S">
+      <species metaid="M_MAM00123r" sboTerm="SBO:0000247" id="M_MAM00123r" name="(8Z,11Z)-eicosadienoyl-CoA" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H66N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00123r">
+            <rdf:Description rdf:about="#M_MAM00123r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/LMFA07050061"/>
@@ -4365,10 +4364,10 @@
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         </annotation>
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-      <species metaid="MAM00124c" sboTerm="SBO:0000247" id="MAM00124c" name="(8Z,11Z,14Z,17Z)-eicosatetraenoylcarnitine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H45NO4">
+      <species metaid="M_MAM00124c" sboTerm="SBO:0000247" id="M_MAM00124c" name="(8Z,11Z,14Z,17Z)-eicosatetraenoylcarnitine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H45NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00124c">
+            <rdf:Description rdf:about="#M_MAM00124c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/eicostetcrn"/>
@@ -4380,10 +4379,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM00124m" sboTerm="SBO:0000247" id="MAM00124m" name="(8Z,11Z,14Z,17Z)-eicosatetraenoylcarnitine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H45NO4">
+      <species metaid="M_MAM00124m" sboTerm="SBO:0000247" id="M_MAM00124m" name="(8Z,11Z,14Z,17Z)-eicosatetraenoylcarnitine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H45NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00124m">
+            <rdf:Description rdf:about="#M_MAM00124m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/eicostetcrn"/>
@@ -4395,10 +4394,10 @@
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-      <species metaid="MAM00124r" sboTerm="SBO:0000247" id="MAM00124r" name="(8Z,11Z,14Z,17Z)-eicosatetraenoylcarnitine" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H45NO4">
+      <species metaid="M_MAM00124r" sboTerm="SBO:0000247" id="M_MAM00124r" name="(8Z,11Z,14Z,17Z)-eicosatetraenoylcarnitine" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H45NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00124r">
+            <rdf:Description rdf:about="#M_MAM00124r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/eicostetcrn"/>
@@ -4410,10 +4409,10 @@
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         </annotation>
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-      <species metaid="MAM00125c" sboTerm="SBO:0000247" id="MAM00125c" name="(8Z,11Z,14Z,17Z)-eicosatetraenoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H62N7O17P3S">
+      <species metaid="M_MAM00125c" sboTerm="SBO:0000247" id="M_MAM00125c" name="(8Z,11Z,14Z,17Z)-eicosatetraenoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H62N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00125c">
+            <rdf:Description rdf:about="#M_MAM00125c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/eicostetcoa"/>
@@ -4428,10 +4427,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00125m" sboTerm="SBO:0000247" id="MAM00125m" name="(8Z,11Z,14Z,17Z)-eicosatetraenoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H62N7O17P3S">
+      <species metaid="M_MAM00125m" sboTerm="SBO:0000247" id="M_MAM00125m" name="(8Z,11Z,14Z,17Z)-eicosatetraenoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H62N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00125m">
+            <rdf:Description rdf:about="#M_MAM00125m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/eicostetcoa"/>
@@ -4446,10 +4445,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00125r" sboTerm="SBO:0000247" id="MAM00125r" name="(8Z,11Z,14Z,17Z)-eicosatetraenoyl-CoA" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H62N7O17P3S">
+      <species metaid="M_MAM00125r" sboTerm="SBO:0000247" id="M_MAM00125r" name="(8Z,11Z,14Z,17Z)-eicosatetraenoyl-CoA" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H62N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00125r">
+            <rdf:Description rdf:about="#M_MAM00125r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/eicostetcoa"/>
@@ -4464,10 +4463,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM00126c" sboTerm="SBO:0000247" id="MAM00126c" name="(9E)-octadecenoylcarnitine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H47NO4">
+      <species metaid="M_MAM00126c" sboTerm="SBO:0000247" id="M_MAM00126c" name="(9E)-octadecenoylcarnitine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H47NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00126c">
+            <rdf:Description rdf:about="#M_MAM00126c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/elaidcrn"/>
@@ -4483,10 +4482,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM00126m" sboTerm="SBO:0000247" id="MAM00126m" name="(9E)-octadecenoylcarnitine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H47NO4">
+      <species metaid="M_MAM00126m" sboTerm="SBO:0000247" id="M_MAM00126m" name="(9E)-octadecenoylcarnitine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H47NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00126m">
+            <rdf:Description rdf:about="#M_MAM00126m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/elaidcrn"/>
@@ -4502,10 +4501,10 @@
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-      <species metaid="MAM00126r" sboTerm="SBO:0000247" id="MAM00126r" name="(9E)-octadecenoylcarnitine" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H47NO4">
+      <species metaid="M_MAM00126r" sboTerm="SBO:0000247" id="M_MAM00126r" name="(9E)-octadecenoylcarnitine" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H47NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00126r">
+            <rdf:Description rdf:about="#M_MAM00126r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/elaidcrn"/>
@@ -4521,10 +4520,10 @@
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-      <species metaid="MAM00127c" sboTerm="SBO:0000247" id="MAM00127c" name="(9E)-octadecenoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C39H64N7O17P3S">
+      <species metaid="M_MAM00127c" sboTerm="SBO:0000247" id="M_MAM00127c" name="(9E)-octadecenoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C39H64N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00127c">
+            <rdf:Description rdf:about="#M_MAM00127c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM11476"/>
@@ -4535,10 +4534,10 @@
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-      <species metaid="MAM00127m" sboTerm="SBO:0000247" id="MAM00127m" name="(9E)-octadecenoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C39H64N7O17P3S">
+      <species metaid="M_MAM00127m" sboTerm="SBO:0000247" id="M_MAM00127m" name="(9E)-octadecenoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C39H64N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00127m">
+            <rdf:Description rdf:about="#M_MAM00127m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM11476"/>
@@ -4549,10 +4548,10 @@
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         </annotation>
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-      <species metaid="MAM00127r" sboTerm="SBO:0000247" id="MAM00127r" name="(9E)-octadecenoyl-CoA" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C39H64N7O17P3S">
+      <species metaid="M_MAM00127r" sboTerm="SBO:0000247" id="M_MAM00127r" name="(9E)-octadecenoyl-CoA" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C39H64N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00127r">
+            <rdf:Description rdf:about="#M_MAM00127r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM11476"/>
@@ -4563,10 +4562,10 @@
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-      <species metaid="MAM00128c" sboTerm="SBO:0000247" id="MAM00128c" name="(9E)-tetradecenoic acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C14H25O2">
+      <species metaid="M_MAM00128c" sboTerm="SBO:0000247" id="M_MAM00128c" name="(9E)-tetradecenoic acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C14H25O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00128c">
+            <rdf:Description rdf:about="#M_MAM00128c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ttdcea"/>
@@ -4582,10 +4581,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM00128l" sboTerm="SBO:0000247" id="MAM00128l" name="(9E)-tetradecenoic acid" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C14H25O2">
+      <species metaid="M_MAM00128l" sboTerm="SBO:0000247" id="M_MAM00128l" name="(9E)-tetradecenoic acid" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C14H25O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00128l">
+            <rdf:Description rdf:about="#M_MAM00128l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ttdcea"/>
@@ -4601,10 +4600,10 @@
           </rdf:RDF>
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-      <species metaid="MAM00128r" sboTerm="SBO:0000247" id="MAM00128r" name="(9E)-tetradecenoic acid" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C14H25O2">
+      <species metaid="M_MAM00128r" sboTerm="SBO:0000247" id="M_MAM00128r" name="(9E)-tetradecenoic acid" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C14H25O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00128r">
+            <rdf:Description rdf:about="#M_MAM00128r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ttdcea"/>
@@ -4620,10 +4619,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM00128e" sboTerm="SBO:0000247" id="MAM00128e" name="(9E)-tetradecenoic acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C14H25O2">
+      <species metaid="M_MAM00128e" sboTerm="SBO:0000247" id="M_MAM00128e" name="(9E)-tetradecenoic acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C14H25O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00128e">
+            <rdf:Description rdf:about="#M_MAM00128e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ttdcea"/>
@@ -4639,10 +4638,10 @@
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         </annotation>
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-      <species metaid="MAM00129c" sboTerm="SBO:0000247" id="MAM00129c" name="(9E)-tetradecenoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C35H56N7O17P3S">
+      <species metaid="M_MAM00129c" sboTerm="SBO:0000247" id="M_MAM00129c" name="(9E)-tetradecenoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C35H56N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00129c">
+            <rdf:Description rdf:about="#M_MAM00129c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M00129"/>
@@ -4652,10 +4651,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00129m" sboTerm="SBO:0000247" id="MAM00129m" name="(9E)-tetradecenoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C35H56N7O17P3S">
+      <species metaid="M_MAM00129m" sboTerm="SBO:0000247" id="M_MAM00129m" name="(9E)-tetradecenoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C35H56N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00129m">
+            <rdf:Description rdf:about="#M_MAM00129m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M00129"/>
@@ -4665,10 +4664,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00129r" sboTerm="SBO:0000247" id="MAM00129r" name="(9E)-tetradecenoyl-CoA" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C35H56N7O17P3S">
+      <species metaid="M_MAM00129r" sboTerm="SBO:0000247" id="M_MAM00129r" name="(9E)-tetradecenoyl-CoA" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C35H56N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00129r">
+            <rdf:Description rdf:about="#M_MAM00129r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M00129"/>
@@ -4678,10 +4677,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00130c" sboTerm="SBO:0000247" id="MAM00130c" name="(9Z,12Z,15Z,18Z)-tetracosatetraenoylcarnitine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C31H53NO4">
+      <species metaid="M_MAM00130c" sboTerm="SBO:0000247" id="M_MAM00130c" name="(9Z,12Z,15Z,18Z)-tetracosatetraenoylcarnitine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C31H53NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00130c">
+            <rdf:Description rdf:about="#M_MAM00130c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/tettet6crn"/>
@@ -4694,10 +4693,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00130r" sboTerm="SBO:0000247" id="MAM00130r" name="(9Z,12Z,15Z,18Z)-tetracosatetraenoylcarnitine" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C31H53NO4">
+      <species metaid="M_MAM00130r" sboTerm="SBO:0000247" id="M_MAM00130r" name="(9Z,12Z,15Z,18Z)-tetracosatetraenoylcarnitine" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C31H53NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00130r">
+            <rdf:Description rdf:about="#M_MAM00130r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/tettet6crn"/>
@@ -4710,10 +4709,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00131c" sboTerm="SBO:0000247" id="MAM00131c" name="(9Z,12Z,15Z,18Z)-tetracosatetraenoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C45H70N7O17P3S">
+      <species metaid="M_MAM00131c" sboTerm="SBO:0000247" id="M_MAM00131c" name="(9Z,12Z,15Z,18Z)-tetracosatetraenoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C45H70N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00131c">
+            <rdf:Description rdf:about="#M_MAM00131c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/tettet6coa"/>
@@ -4731,10 +4730,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00131x" sboTerm="SBO:0000247" id="MAM00131x" name="(9Z,12Z,15Z,18Z)-tetracosatetraenoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C45H70N7O17P3S">
+      <species metaid="M_MAM00131x" sboTerm="SBO:0000247" id="M_MAM00131x" name="(9Z,12Z,15Z,18Z)-tetracosatetraenoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C45H70N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00131x">
+            <rdf:Description rdf:about="#M_MAM00131x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/tettet6coa"/>
@@ -4752,10 +4751,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00131r" sboTerm="SBO:0000247" id="MAM00131r" name="(9Z,12Z,15Z,18Z)-tetracosatetraenoyl-CoA" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C45H70N7O17P3S">
+      <species metaid="M_MAM00131r" sboTerm="SBO:0000247" id="M_MAM00131r" name="(9Z,12Z,15Z,18Z)-tetracosatetraenoyl-CoA" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C45H70N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00131r">
+            <rdf:Description rdf:about="#M_MAM00131r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/tettet6coa"/>
@@ -4773,10 +4772,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM00132c" sboTerm="SBO:0000247" id="MAM00132c" name="(9Z,12Z,15Z,18Z)-TTA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H39O2">
+      <species metaid="M_MAM00132c" sboTerm="SBO:0000247" id="M_MAM00132c" name="(9Z,12Z,15Z,18Z)-TTA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H39O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00132c">
+            <rdf:Description rdf:about="#M_MAM00132c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/tettet6"/>
@@ -4790,10 +4789,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00132l" sboTerm="SBO:0000247" id="MAM00132l" name="(9Z,12Z,15Z,18Z)-TTA" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H39O2">
+      <species metaid="M_MAM00132l" sboTerm="SBO:0000247" id="M_MAM00132l" name="(9Z,12Z,15Z,18Z)-TTA" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H39O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00132l">
+            <rdf:Description rdf:about="#M_MAM00132l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/tettet6"/>
@@ -4807,10 +4806,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00132r" sboTerm="SBO:0000247" id="MAM00132r" name="(9Z,12Z,15Z,18Z)-TTA" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H39O2">
+      <species metaid="M_MAM00132r" sboTerm="SBO:0000247" id="M_MAM00132r" name="(9Z,12Z,15Z,18Z)-TTA" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H39O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00132r">
+            <rdf:Description rdf:about="#M_MAM00132r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/tettet6"/>
@@ -4824,10 +4823,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00132e" sboTerm="SBO:0000247" id="MAM00132e" name="(9Z,12Z,15Z,18Z)-TTA" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H39O2">
+      <species metaid="M_MAM00132e" sboTerm="SBO:0000247" id="M_MAM00132e" name="(9Z,12Z,15Z,18Z)-TTA" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H39O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00132e">
+            <rdf:Description rdf:about="#M_MAM00132e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/tettet6"/>
@@ -4841,10 +4840,10 @@
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-      <species metaid="MAM00133c" sboTerm="SBO:0000247" id="MAM00133c" name="(9Z,12Z,15Z,18Z,21Z)-tetracosapentaenoylcarnitine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C31H51NO4">
+      <species metaid="M_MAM00133c" sboTerm="SBO:0000247" id="M_MAM00133c" name="(9Z,12Z,15Z,18Z,21Z)-tetracosapentaenoylcarnitine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C31H51NO4">
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-            <rdf:Description rdf:about="#MAM00133c">
+            <rdf:Description rdf:about="#M_MAM00133c">
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                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/tetpent3crn"/>
@@ -4857,10 +4856,10 @@
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+      <species metaid="M_MAM00133r" sboTerm="SBO:0000247" id="M_MAM00133r" name="(9Z,12Z,15Z,18Z,21Z)-tetracosapentaenoylcarnitine" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C31H51NO4">
         <annotation>
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-            <rdf:Description rdf:about="#MAM00133r">
+            <rdf:Description rdf:about="#M_MAM00133r">
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@@ -4873,10 +4872,10 @@
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-      <species metaid="MAM00134c" sboTerm="SBO:0000247" id="MAM00134c" name="(9Z,12Z,15Z,18Z,21Z)-tetracosapentaenoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C45H68N7O17P3S">
+      <species metaid="M_MAM00134c" sboTerm="SBO:0000247" id="M_MAM00134c" name="(9Z,12Z,15Z,18Z,21Z)-tetracosapentaenoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C45H68N7O17P3S">
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-            <rdf:Description rdf:about="#MAM00134c">
+            <rdf:Description rdf:about="#M_MAM00134c">
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@@ -4893,10 +4892,10 @@
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-      <species metaid="MAM00134x" sboTerm="SBO:0000247" id="MAM00134x" name="(9Z,12Z,15Z,18Z,21Z)-tetracosapentaenoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C45H68N7O17P3S">
+      <species metaid="M_MAM00134x" sboTerm="SBO:0000247" id="M_MAM00134x" name="(9Z,12Z,15Z,18Z,21Z)-tetracosapentaenoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C45H68N7O17P3S">
         <annotation>
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-            <rdf:Description rdf:about="#MAM00134x">
+            <rdf:Description rdf:about="#M_MAM00134x">
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@@ -4913,10 +4912,10 @@
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+      <species metaid="M_MAM00134r" sboTerm="SBO:0000247" id="M_MAM00134r" name="(9Z,12Z,15Z,18Z,21Z)-tetracosapentaenoyl-CoA" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C45H68N7O17P3S">
         <annotation>
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+            <rdf:Description rdf:about="#M_MAM00134r">
               <bqbiol:is>
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@@ -4933,10 +4932,10 @@
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+      <species metaid="M_MAM00135c" sboTerm="SBO:0000247" id="M_MAM00135c" name="(9Z,12Z,15Z,18Z,21Z)-TPA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H37O2">
         <annotation>
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-            <rdf:Description rdf:about="#MAM00135c">
+            <rdf:Description rdf:about="#M_MAM00135c">
               <bqbiol:is>
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                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/tetpent3"/>
@@ -4950,10 +4949,10 @@
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+      <species metaid="M_MAM00135l" sboTerm="SBO:0000247" id="M_MAM00135l" name="(9Z,12Z,15Z,18Z,21Z)-TPA" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H37O2">
         <annotation>
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-            <rdf:Description rdf:about="#MAM00135l">
+            <rdf:Description rdf:about="#M_MAM00135l">
               <bqbiol:is>
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                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/tetpent3"/>
@@ -4967,10 +4966,10 @@
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+      <species metaid="M_MAM00135r" sboTerm="SBO:0000247" id="M_MAM00135r" name="(9Z,12Z,15Z,18Z,21Z)-TPA" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H37O2">
         <annotation>
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+            <rdf:Description rdf:about="#M_MAM00135r">
               <bqbiol:is>
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                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/tetpent3"/>
@@ -4984,10 +4983,10 @@
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-      <species metaid="MAM00135e" sboTerm="SBO:0000247" id="MAM00135e" name="(9Z,12Z,15Z,18Z,21Z)-TPA" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H37O2">
+      <species metaid="M_MAM00135e" sboTerm="SBO:0000247" id="M_MAM00135e" name="(9Z,12Z,15Z,18Z,21Z)-TPA" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H37O2">
         <annotation>
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-            <rdf:Description rdf:about="#MAM00135e">
+            <rdf:Description rdf:about="#M_MAM00135e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/tetpent3"/>
@@ -5001,10 +5000,10 @@
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-      <species metaid="MAM00136c" sboTerm="SBO:0000247" id="MAM00136c" name="(ADP-D-ribosyl)n+1-acceptor" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="X">
+      <species metaid="M_MAM00136c" sboTerm="SBO:0000247" id="M_MAM00136c" name="(ADP-D-ribosyl)n+1-acceptor" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="X">
         <annotation>
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-            <rdf:Description rdf:about="#MAM00136c">
+            <rdf:Description rdf:about="#M_MAM00136c">
               <bqbiol:is>
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                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C03245"/>
@@ -5016,10 +5015,10 @@
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+      <species metaid="M_MAM00137c" sboTerm="SBO:0000247" id="M_MAM00137c" name="(ADP-D-ribosyl)n-acceptor" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C15H19N5O13P2X">
         <annotation>
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-            <rdf:Description rdf:about="#MAM00137c">
+            <rdf:Description rdf:about="#M_MAM00137c">
               <bqbiol:is>
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                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C03245"/>
@@ -5031,10 +5030,10 @@
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-      <species metaid="MAM00138g" sboTerm="SBO:0000247" id="MAM00138g" name="(alpha-D-Glucosyl)-(alpha-D-mannosyl)8-beta-D-mannosyl-diacetylchitobiosyl-L-asparagine (protein)" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C76H127N2O60X">
+      <species metaid="M_MAM00138g" sboTerm="SBO:0000247" id="M_MAM00138g" name="(alpha-D-Glucosyl)-(alpha-D-mannosyl)8-beta-D-mannosyl-diacetylchitobiosyl-L-asparagine (protein)" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C76H127N2O60X">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00138g">
+            <rdf:Description rdf:about="#M_MAM00138g">
               <bqbiol:is>
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                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/g1m8masn"/>
@@ -5046,10 +5045,10 @@
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-      <species metaid="MAM00138r" sboTerm="SBO:0000247" id="MAM00138r" name="(alpha-D-Glucosyl)-(alpha-D-mannosyl)8-beta-D-mannosyl-diacetylchitobiosyl-L-asparagine (protein)" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C76H127N2O60X">
+      <species metaid="M_MAM00138r" sboTerm="SBO:0000247" id="M_MAM00138r" name="(alpha-D-Glucosyl)-(alpha-D-mannosyl)8-beta-D-mannosyl-diacetylchitobiosyl-L-asparagine (protein)" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C76H127N2O60X">
         <annotation>
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-            <rdf:Description rdf:about="#MAM00138r">
+            <rdf:Description rdf:about="#M_MAM00138r">
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                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/g1m8masn"/>
@@ -5061,10 +5060,10 @@
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+      <species metaid="M_MAM00139g" sboTerm="SBO:0000247" id="M_MAM00139g" name="(alpha-D-Glucosyl)2-(alpha-D-mannosyl)8-beta-D-mannosyl-diacetylchitobiosyl-L-asparagine (protein)" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C82H137N2O65X">
         <annotation>
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-            <rdf:Description rdf:about="#MAM00139g">
+            <rdf:Description rdf:about="#M_MAM00139g">
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@@ -5076,10 +5075,10 @@
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-      <species metaid="MAM00139r" sboTerm="SBO:0000247" id="MAM00139r" name="(alpha-D-Glucosyl)2-(alpha-D-mannosyl)8-beta-D-mannosyl-diacetylchitobiosyl-L-asparagine (protein)" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C82H137N2O65X">
+      <species metaid="M_MAM00139r" sboTerm="SBO:0000247" id="M_MAM00139r" name="(alpha-D-Glucosyl)2-(alpha-D-mannosyl)8-beta-D-mannosyl-diacetylchitobiosyl-L-asparagine (protein)" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C82H137N2O65X">
         <annotation>
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+            <rdf:Description rdf:about="#M_MAM00139r">
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@@ -5091,10 +5090,10 @@
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+      <species metaid="M_MAM00140g" sboTerm="SBO:0000247" id="M_MAM00140g" name="(alpha-D-Glucosyl)3-(alpha-D-mannosyl)8-beta-D-mannosyl-diacetylchitobiosyl-L-asparagine (protein)" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C88H147N2O70X">
         <annotation>
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-            <rdf:Description rdf:about="#MAM00140g">
+            <rdf:Description rdf:about="#M_MAM00140g">
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                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/g3m8masn"/>
@@ -5106,10 +5105,10 @@
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-      <species metaid="MAM00140r" sboTerm="SBO:0000247" id="MAM00140r" name="(alpha-D-Glucosyl)3-(alpha-D-mannosyl)8-beta-D-mannosyl-diacetylchitobiosyl-L-asparagine (protein)" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C88H147N2O70X">
+      <species metaid="M_MAM00140r" sboTerm="SBO:0000247" id="M_MAM00140r" name="(alpha-D-Glucosyl)3-(alpha-D-mannosyl)8-beta-D-mannosyl-diacetylchitobiosyl-L-asparagine (protein)" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C88H147N2O70X">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00140r">
+            <rdf:Description rdf:about="#M_MAM00140r">
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                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/g3m8masn"/>
@@ -5121,10 +5120,10 @@
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-      <species metaid="MAM00141l" sboTerm="SBO:0000247" id="MAM00141l" name="(alpha-D-mannosyl)2-beta-D-mannosyl-N-acetylglucosamine" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C26H45NO21">
+      <species metaid="M_MAM00141l" sboTerm="SBO:0000247" id="M_MAM00141l" name="(alpha-D-mannosyl)2-beta-D-mannosyl-N-acetylglucosamine" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C26H45NO21">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00141l">
+            <rdf:Description rdf:about="#M_MAM00141l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/m2mn"/>
@@ -5139,10 +5138,10 @@
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-      <species metaid="MAM00142g" sboTerm="SBO:0000247" id="MAM00142g" name="(alpha-D-mannosyl)4-beta-D-mannosyl-diacetylchitobiosyl-L-asparagine (protein)" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C46H77N2O35X">
+      <species metaid="M_MAM00142g" sboTerm="SBO:0000247" id="M_MAM00142g" name="(alpha-D-mannosyl)4-beta-D-mannosyl-diacetylchitobiosyl-L-asparagine (protein)" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C46H77N2O35X">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00142g">
+            <rdf:Description rdf:about="#M_MAM00142g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/m4masn"/>
@@ -5154,10 +5153,10 @@
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-      <species metaid="MAM00143g" sboTerm="SBO:0000247" id="MAM00143g" name="(alpha-D-mannosyl)5-beta-D-mannosyl-diacetylchitobiosyl-L-asparagine (protein) (B1)" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C52H87N2O40X">
+      <species metaid="M_MAM00143g" sboTerm="SBO:0000247" id="M_MAM00143g" name="(alpha-D-mannosyl)5-beta-D-mannosyl-diacetylchitobiosyl-L-asparagine (protein) (B1)" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C52H87N2O40X">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00143g">
+            <rdf:Description rdf:about="#M_MAM00143g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/m5masnB1"/>
@@ -5169,10 +5168,10 @@
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-      <species metaid="MAM00144g" sboTerm="SBO:0000247" id="MAM00144g" name="(alpha-D-mannosyl)5-beta-D-mannosyl-diacetylchitobiosyl-L-asparagine (protein) (B2)" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C52H87N2O40X">
+      <species metaid="M_MAM00144g" sboTerm="SBO:0000247" id="M_MAM00144g" name="(alpha-D-mannosyl)5-beta-D-mannosyl-diacetylchitobiosyl-L-asparagine (protein) (B2)" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C52H87N2O40X">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00144g">
+            <rdf:Description rdf:about="#M_MAM00144g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/m5masnB2"/>
@@ -5184,10 +5183,10 @@
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-      <species metaid="MAM00145g" sboTerm="SBO:0000247" id="MAM00145g" name="(alpha-D-mannosyl)5-beta-D-mannosyl-diacetylchitobiosyl-L-asparagine (protein) (C)" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C52H87N2O40X">
+      <species metaid="M_MAM00145g" sboTerm="SBO:0000247" id="M_MAM00145g" name="(alpha-D-mannosyl)5-beta-D-mannosyl-diacetylchitobiosyl-L-asparagine (protein) (C)" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C52H87N2O40X">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00145g">
+            <rdf:Description rdf:about="#M_MAM00145g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/m5masnC"/>
@@ -5199,10 +5198,10 @@
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-      <species metaid="MAM00146g" sboTerm="SBO:0000247" id="MAM00146g" name="(alpha-D-mannosyl)6-beta-D-mannosyl-diacetylchitobiosyl-L-asparagine (protein) (A)" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C58H97N2O45X">
+      <species metaid="M_MAM00146g" sboTerm="SBO:0000247" id="M_MAM00146g" name="(alpha-D-mannosyl)6-beta-D-mannosyl-diacetylchitobiosyl-L-asparagine (protein) (A)" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C58H97N2O45X">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00146g">
+            <rdf:Description rdf:about="#M_MAM00146g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/m6masnA"/>
@@ -5214,10 +5213,10 @@
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-      <species metaid="MAM00147g" sboTerm="SBO:0000247" id="MAM00147g" name="(alpha-D-mannosyl)6-beta-D-mannosyl-diacetylchitobiosyl-L-asparagine (protein) (B1)" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C58H97N2O45X">
+      <species metaid="M_MAM00147g" sboTerm="SBO:0000247" id="M_MAM00147g" name="(alpha-D-mannosyl)6-beta-D-mannosyl-diacetylchitobiosyl-L-asparagine (protein) (B1)" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C58H97N2O45X">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00147g">
+            <rdf:Description rdf:about="#M_MAM00147g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/m6masnB1"/>
@@ -5229,10 +5228,10 @@
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         </annotation>
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-      <species metaid="MAM00148g" sboTerm="SBO:0000247" id="MAM00148g" name="(alpha-D-mannosyl)6-beta-D-mannosyl-diacetylchitobiosyl-L-asparagine (protein) (B2)" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C58H97N2O45X">
+      <species metaid="M_MAM00148g" sboTerm="SBO:0000247" id="M_MAM00148g" name="(alpha-D-mannosyl)6-beta-D-mannosyl-diacetylchitobiosyl-L-asparagine (protein) (B2)" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C58H97N2O45X">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00148g">
+            <rdf:Description rdf:about="#M_MAM00148g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/m6masnB2"/>
@@ -5244,10 +5243,10 @@
           </rdf:RDF>
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-      <species metaid="MAM00149g" sboTerm="SBO:0000247" id="MAM00149g" name="(alpha-D-mannosyl)6-beta-D-mannosyl-diacetylchitobiosyl-L-asparagine (protein) (C)" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C58H97N2O45X">
+      <species metaid="M_MAM00149g" sboTerm="SBO:0000247" id="M_MAM00149g" name="(alpha-D-mannosyl)6-beta-D-mannosyl-diacetylchitobiosyl-L-asparagine (protein) (C)" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C58H97N2O45X">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00149g">
+            <rdf:Description rdf:about="#M_MAM00149g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/m6masnC"/>
@@ -5259,10 +5258,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00150g" sboTerm="SBO:0000247" id="MAM00150g" name="(alpha-D-mannosyl)7-beta-D-mannosyl-diacetylchitobiosyl-L-asparagine, isoform A (protein)" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C64H107N2O50X">
+      <species metaid="M_MAM00150g" sboTerm="SBO:0000247" id="M_MAM00150g" name="(alpha-D-mannosyl)7-beta-D-mannosyl-diacetylchitobiosyl-L-asparagine, isoform A (protein)" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C64H107N2O50X">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00150g">
+            <rdf:Description rdf:about="#M_MAM00150g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/m7masnA"/>
@@ -5274,10 +5273,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM00151g" sboTerm="SBO:0000247" id="MAM00151g" name="(alpha-D-mannosyl)7-beta-D-mannosyl-diacetylchitobiosyl-L-asparagine, isoform B (protein)" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C64H107N2O50X">
+      <species metaid="M_MAM00151g" sboTerm="SBO:0000247" id="M_MAM00151g" name="(alpha-D-mannosyl)7-beta-D-mannosyl-diacetylchitobiosyl-L-asparagine, isoform B (protein)" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C64H107N2O50X">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00151g">
+            <rdf:Description rdf:about="#M_MAM00151g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/m7masnB"/>
@@ -5289,10 +5288,10 @@
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         </annotation>
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-      <species metaid="MAM00151r" sboTerm="SBO:0000247" id="MAM00151r" name="(alpha-D-mannosyl)7-beta-D-mannosyl-diacetylchitobiosyl-L-asparagine, isoform B (protein)" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C64H107N2O50X">
+      <species metaid="M_MAM00151r" sboTerm="SBO:0000247" id="M_MAM00151r" name="(alpha-D-mannosyl)7-beta-D-mannosyl-diacetylchitobiosyl-L-asparagine, isoform B (protein)" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C64H107N2O50X">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00151r">
+            <rdf:Description rdf:about="#M_MAM00151r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/m7masnB"/>
@@ -5304,10 +5303,10 @@
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         </annotation>
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-      <species metaid="MAM00152g" sboTerm="SBO:0000247" id="MAM00152g" name="(alpha-D-mannosyl)7-beta-D-mannosyl-diacetylchitobiosyl-L-asparagine, isoform C (protein)" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C64H107N2O50X">
+      <species metaid="M_MAM00152g" sboTerm="SBO:0000247" id="M_MAM00152g" name="(alpha-D-mannosyl)7-beta-D-mannosyl-diacetylchitobiosyl-L-asparagine, isoform C (protein)" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C64H107N2O50X">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00152g">
+            <rdf:Description rdf:about="#M_MAM00152g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/m7masnC"/>
@@ -5319,10 +5318,10 @@
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-      <species metaid="MAM00153g" sboTerm="SBO:0000247" id="MAM00153g" name="(alpha-D-mannosyl)8-beta-D-mannosyl-diacetylchitobiosyl-L-asparagine (protein)" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C70H117N2O55X">
+      <species metaid="M_MAM00153g" sboTerm="SBO:0000247" id="M_MAM00153g" name="(alpha-D-mannosyl)8-beta-D-mannosyl-diacetylchitobiosyl-L-asparagine (protein)" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C70H117N2O55X">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00153g">
+            <rdf:Description rdf:about="#M_MAM00153g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/m8masn"/>
@@ -5334,10 +5333,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00153r" sboTerm="SBO:0000247" id="MAM00153r" name="(alpha-D-mannosyl)8-beta-D-mannosyl-diacetylchitobiosyl-L-asparagine (protein)" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C70H117N2O55X">
+      <species metaid="M_MAM00153r" sboTerm="SBO:0000247" id="M_MAM00153r" name="(alpha-D-mannosyl)8-beta-D-mannosyl-diacetylchitobiosyl-L-asparagine (protein)" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C70H117N2O55X">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00153r">
+            <rdf:Description rdf:about="#M_MAM00153r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/m8masn"/>
@@ -5349,10 +5348,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00154r" sboTerm="SBO:0000247" id="MAM00154r" name="(Glc)3 (GlcNAc)2 (Man)9 (PP-Dol)1" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C188H310N2O77P2">
+      <species metaid="M_MAM00154r" sboTerm="SBO:0000247" id="M_MAM00154r" name="(Glc)3 (GlcNAc)2 (Man)9 (PP-Dol)1" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C188H310N2O77P2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00154r">
+            <rdf:Description rdf:about="#M_MAM00154r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:53019"/>
@@ -5364,10 +5363,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00155c" sboTerm="SBO:0000247" id="MAM00155c" name="(indol-3-yl)acetamide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H10N2O">
+      <species metaid="M_MAM00155c" sboTerm="SBO:0000247" id="M_MAM00155c" name="(indol-3-yl)acetamide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H10N2O">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00155c">
+            <rdf:Description rdf:about="#M_MAM00155c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C02693"/>
@@ -5379,10 +5378,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00156c" sboTerm="SBO:0000247" id="MAM00156c" name="(R)-1,2-dimethyl-5,6-dihydroxy-tetrahydroisoquinoline" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C11H16NO2">
+      <species metaid="M_MAM00156c" sboTerm="SBO:0000247" id="M_MAM00156c" name="(R)-1,2-dimethyl-5,6-dihydroxy-tetrahydroisoquinoline" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C11H16NO2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00156c">
+            <rdf:Description rdf:about="#M_MAM00156c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM31535"/>
@@ -5394,10 +5393,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00157c" sboTerm="SBO:0000247" id="MAM00157c" name="(R)-3-hydroxybutanoate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C4H7O3">
+      <species metaid="M_MAM00157c" sboTerm="SBO:0000247" id="M_MAM00157c" name="(R)-3-hydroxybutanoate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C4H7O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00157c">
+            <rdf:Description rdf:about="#M_MAM00157c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/bhb"/>
@@ -5414,10 +5413,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00157m" sboTerm="SBO:0000247" id="MAM00157m" name="(R)-3-hydroxybutanoate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C4H7O3">
+      <species metaid="M_MAM00157m" sboTerm="SBO:0000247" id="M_MAM00157m" name="(R)-3-hydroxybutanoate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C4H7O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00157m">
+            <rdf:Description rdf:about="#M_MAM00157m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/bhb"/>
@@ -5434,10 +5433,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00157e" sboTerm="SBO:0000247" id="MAM00157e" name="(R)-3-hydroxybutanoate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C4H7O3">
+      <species metaid="M_MAM00157e" sboTerm="SBO:0000247" id="M_MAM00157e" name="(R)-3-hydroxybutanoate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C4H7O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00157e">
+            <rdf:Description rdf:about="#M_MAM00157e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/bhb"/>
@@ -5454,10 +5453,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00158c" sboTerm="SBO:0000247" id="MAM00158c" name="(R)-3-hydroxybutanoyl-[ACP]" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C15H27N2O9PRS">
+      <species metaid="M_MAM00158c" sboTerm="SBO:0000247" id="M_MAM00158c" name="(R)-3-hydroxybutanoyl-[ACP]" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C15H27N2O9PRS">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00158c">
+            <rdf:Description rdf:about="#M_MAM00158c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C04618"/>
@@ -5469,10 +5468,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00159m" sboTerm="SBO:0000247" id="MAM00159m" name="(R)-3-hydroxybutanoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C25H38N7O18P3S">
+      <species metaid="M_MAM00159m" sboTerm="SBO:0000247" id="M_MAM00159m" name="(R)-3-hydroxybutanoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C25H38N7O18P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00159m">
+            <rdf:Description rdf:about="#M_MAM00159m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/3hbcoa__R"/>
@@ -5487,10 +5486,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00160c" sboTerm="SBO:0000247" id="MAM00160c" name="(R)-3-hydroxydecanoyl-[ACP]" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C21H39N2O9PRS">
+      <species metaid="M_MAM00160c" sboTerm="SBO:0000247" id="M_MAM00160c" name="(R)-3-hydroxydecanoyl-[ACP]" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C21H39N2O9PRS">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00160c">
+            <rdf:Description rdf:about="#M_MAM00160c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C04619"/>
@@ -5502,10 +5501,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00161c" sboTerm="SBO:0000247" id="MAM00161c" name="(R)-3-hydroxyoctanoyl-[ACP]" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C19H35N2O9PRS">
+      <species metaid="M_MAM00161c" sboTerm="SBO:0000247" id="M_MAM00161c" name="(R)-3-hydroxyoctanoyl-[ACP]" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C19H35N2O9PRS">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00161c">
+            <rdf:Description rdf:about="#M_MAM00161c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C04620"/>
@@ -5517,10 +5516,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00162c" sboTerm="SBO:0000247" id="MAM00162c" name="(R)-3-hydroxypalmitoyl-[ACP]" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C27H51N2O9PRS">
+      <species metaid="M_MAM00162c" sboTerm="SBO:0000247" id="M_MAM00162c" name="(R)-3-hydroxypalmitoyl-[ACP]" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C27H51N2O9PRS">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00162c">
+            <rdf:Description rdf:about="#M_MAM00162c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C04633"/>
@@ -5532,10 +5531,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00163c" sboTerm="SBO:0000247" id="MAM00163c" name="(R)-4-phosphopantothenoyl-cysteine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C12H20N2O9PS">
+      <species metaid="M_MAM00163c" sboTerm="SBO:0000247" id="M_MAM00163c" name="(R)-4-phosphopantothenoyl-cysteine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C12H20N2O9PS">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00163c">
+            <rdf:Description rdf:about="#M_MAM00163c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/4ppcys"/>
@@ -5550,10 +5549,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00163m" sboTerm="SBO:0000247" id="MAM00163m" name="(R)-4-phosphopantothenoyl-cysteine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C12H20N2O9PS">
+      <species metaid="M_MAM00163m" sboTerm="SBO:0000247" id="M_MAM00163m" name="(R)-4-phosphopantothenoyl-cysteine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C12H20N2O9PS">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00163m">
+            <rdf:Description rdf:about="#M_MAM00163m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/4ppcys"/>
@@ -5568,10 +5567,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00164c" sboTerm="SBO:0000247" id="MAM00164c" name="(R)-5-diphosphomevalonate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C6H10O10P2">
+      <species metaid="M_MAM00164c" sboTerm="SBO:0000247" id="M_MAM00164c" name="(R)-5-diphosphomevalonate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C6H10O10P2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00164c">
+            <rdf:Description rdf:about="#M_MAM00164c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/5dpmev"/>
@@ -5586,10 +5585,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00165c" sboTerm="SBO:0000247" id="MAM00165c" name="(R)-5-phosphomevalonate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C6H10O7P">
+      <species metaid="M_MAM00165c" sboTerm="SBO:0000247" id="M_MAM00165c" name="(R)-5-phosphomevalonate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C6H10O7P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00165c">
+            <rdf:Description rdf:about="#M_MAM00165c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/5pmev"/>
@@ -5604,10 +5603,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00166m" sboTerm="SBO:0000247" id="MAM00166m" name="(R)-methylmalonyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C25H35N7O19P3S">
+      <species metaid="M_MAM00166m" sboTerm="SBO:0000247" id="M_MAM00166m" name="(R)-methylmalonyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C25H35N7O19P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00166m">
+            <rdf:Description rdf:about="#M_MAM00166m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/mmcoa__R"/>
@@ -5622,10 +5621,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00167c" sboTerm="SBO:0000247" id="MAM00167c" name="(R)-mevalonate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H11O4">
+      <species metaid="M_MAM00167c" sboTerm="SBO:0000247" id="M_MAM00167c" name="(R)-mevalonate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H11O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00167c">
+            <rdf:Description rdf:about="#M_MAM00167c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/mev__R"/>
@@ -5641,10 +5640,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00167x" sboTerm="SBO:0000247" id="MAM00167x" name="(R)-mevalonate" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H11O4">
+      <species metaid="M_MAM00167x" sboTerm="SBO:0000247" id="M_MAM00167x" name="(R)-mevalonate" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H11O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00167x">
+            <rdf:Description rdf:about="#M_MAM00167x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/mev__R"/>
@@ -5660,10 +5659,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00168c" sboTerm="SBO:0000247" id="MAM00168c" name="(R)-S-lactoylglutathione" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C13H20N3O8S">
+      <species metaid="M_MAM00168c" sboTerm="SBO:0000247" id="M_MAM00168c" name="(R)-S-lactoylglutathione" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C13H20N3O8S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00168c">
+            <rdf:Description rdf:about="#M_MAM00168c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/lgt__S"/>
@@ -5678,10 +5677,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00168m" sboTerm="SBO:0000247" id="MAM00168m" name="(R)-S-lactoylglutathione" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C13H20N3O8S">
+      <species metaid="M_MAM00168m" sboTerm="SBO:0000247" id="M_MAM00168m" name="(R)-S-lactoylglutathione" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C13H20N3O8S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00168m">
+            <rdf:Description rdf:about="#M_MAM00168m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/lgt__S"/>
@@ -5696,10 +5695,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00169c" sboTerm="SBO:0000247" id="MAM00169c" name="(S)-2-aminobutanoate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H9NO2">
+      <species metaid="M_MAM00169c" sboTerm="SBO:0000247" id="M_MAM00169c" name="(S)-2-aminobutanoate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H9NO2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00169c">
+            <rdf:Description rdf:about="#M_MAM00169c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:35619"/>
@@ -5716,10 +5715,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00170m" sboTerm="SBO:0000247" id="MAM00170m" name="(S)-3-hydroxy-11-cis-octadecenoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C39H64N7O18P3S">
+      <species metaid="M_MAM00170m" sboTerm="SBO:0000247" id="M_MAM00170m" name="(S)-3-hydroxy-11-cis-octadecenoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C39H64N7O18P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00170m">
+            <rdf:Description rdf:about="#M_MAM00170m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM164005"/>
@@ -5730,10 +5729,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00170x" sboTerm="SBO:0000247" id="MAM00170x" name="(S)-3-hydroxy-11-cis-octadecenoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C39H64N7O18P3S">
+      <species metaid="M_MAM00170x" sboTerm="SBO:0000247" id="M_MAM00170x" name="(S)-3-hydroxy-11-cis-octadecenoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C39H64N7O18P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00170x">
+            <rdf:Description rdf:about="#M_MAM00170x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM164005"/>
@@ -5744,10 +5743,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00171m" sboTerm="SBO:0000247" id="MAM00171m" name="(S)-3-hydroxy-2-methylbutyryl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C26H40N7O18P3S">
+      <species metaid="M_MAM00171m" sboTerm="SBO:0000247" id="M_MAM00171m" name="(S)-3-hydroxy-2-methylbutyryl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C26H40N7O18P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00171m">
+            <rdf:Description rdf:about="#M_MAM00171m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/3hmbcoa"/>
@@ -5762,10 +5761,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00172m" sboTerm="SBO:0000247" id="MAM00172m" name="(S)-3-hydroxy-7-hexadecenoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C37H60N7O18P3S">
+      <species metaid="M_MAM00172m" sboTerm="SBO:0000247" id="M_MAM00172m" name="(S)-3-hydroxy-7-hexadecenoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C37H60N7O18P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00172m">
+            <rdf:Description rdf:about="#M_MAM00172m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M00172"/>
@@ -5775,10 +5774,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00172x" sboTerm="SBO:0000247" id="MAM00172x" name="(S)-3-hydroxy-7-hexadecenoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C37H60N7O18P3S">
+      <species metaid="M_MAM00172x" sboTerm="SBO:0000247" id="M_MAM00172x" name="(S)-3-hydroxy-7-hexadecenoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C37H60N7O18P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00172x">
+            <rdf:Description rdf:about="#M_MAM00172x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M00172"/>
@@ -5788,10 +5787,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00173m" sboTerm="SBO:0000247" id="MAM00173m" name="(S)-3-hydroxybutyryl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C25H38N7O18P3S">
+      <species metaid="M_MAM00173m" sboTerm="SBO:0000247" id="M_MAM00173m" name="(S)-3-hydroxybutyryl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C25H38N7O18P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00173m">
+            <rdf:Description rdf:about="#M_MAM00173m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/3hbcoa"/>
@@ -5806,10 +5805,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00173x" sboTerm="SBO:0000247" id="MAM00173x" name="(S)-3-hydroxybutyryl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C25H38N7O18P3S">
+      <species metaid="M_MAM00173x" sboTerm="SBO:0000247" id="M_MAM00173x" name="(S)-3-hydroxybutyryl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C25H38N7O18P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00173x">
+            <rdf:Description rdf:about="#M_MAM00173x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/3hbcoa"/>
@@ -5824,10 +5823,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00174m" sboTerm="SBO:0000247" id="MAM00174m" name="(S)-3-hydroxydodecanoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C33H54N7O18P3S">
+      <species metaid="M_MAM00174m" sboTerm="SBO:0000247" id="M_MAM00174m" name="(S)-3-hydroxydodecanoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C33H54N7O18P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00174m">
+            <rdf:Description rdf:about="#M_MAM00174m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:27668"/>
@@ -5842,10 +5841,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00174x" sboTerm="SBO:0000247" id="MAM00174x" name="(S)-3-hydroxydodecanoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C33H54N7O18P3S">
+      <species metaid="M_MAM00174x" sboTerm="SBO:0000247" id="M_MAM00174x" name="(S)-3-hydroxydodecanoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C33H54N7O18P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00174x">
+            <rdf:Description rdf:about="#M_MAM00174x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:27668"/>
@@ -5860,10 +5859,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00175m" sboTerm="SBO:0000247" id="MAM00175m" name="(S)-3-hydroxyhexadecanoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C37H62N7O18P3S">
+      <species metaid="M_MAM00175m" sboTerm="SBO:0000247" id="M_MAM00175m" name="(S)-3-hydroxyhexadecanoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C37H62N7O18P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00175m">
+            <rdf:Description rdf:about="#M_MAM00175m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:27402"/>
@@ -5878,10 +5877,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00175x" sboTerm="SBO:0000247" id="MAM00175x" name="(S)-3-hydroxyhexadecanoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C37H62N7O18P3S">
+      <species metaid="M_MAM00175x" sboTerm="SBO:0000247" id="M_MAM00175x" name="(S)-3-hydroxyhexadecanoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C37H62N7O18P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00175x">
+            <rdf:Description rdf:about="#M_MAM00175x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:27402"/>
@@ -5896,10 +5895,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00176m" sboTerm="SBO:0000247" id="MAM00176m" name="(S)-3-hydroxyoleyleoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C39H64N7O18P3S">
+      <species metaid="M_MAM00176m" sboTerm="SBO:0000247" id="M_MAM00176m" name="(S)-3-hydroxyoleyleoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C39H64N7O18P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00176m">
+            <rdf:Description rdf:about="#M_MAM00176m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/HC10857"/>
@@ -5909,10 +5908,10 @@
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-      <species metaid="MAM00176x" sboTerm="SBO:0000247" id="MAM00176x" name="(S)-3-hydroxyoleyleoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C39H64N7O18P3S">
+      <species metaid="M_MAM00176x" sboTerm="SBO:0000247" id="M_MAM00176x" name="(S)-3-hydroxyoleyleoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C39H64N7O18P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00176x">
+            <rdf:Description rdf:about="#M_MAM00176x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/HC10857"/>
@@ -5922,10 +5921,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00177m" sboTerm="SBO:0000247" id="MAM00177m" name="(S)-3-hydroxypalmitoleoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C37H60N7O18P3S">
+      <species metaid="M_MAM00177m" sboTerm="SBO:0000247" id="M_MAM00177m" name="(S)-3-hydroxypalmitoleoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C37H60N7O18P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00177m">
+            <rdf:Description rdf:about="#M_MAM00177m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM31749"/>
@@ -5937,10 +5936,10 @@
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-      <species metaid="MAM00177x" sboTerm="SBO:0000247" id="MAM00177x" name="(S)-3-hydroxypalmitoleoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C37H60N7O18P3S">
+      <species metaid="M_MAM00177x" sboTerm="SBO:0000247" id="M_MAM00177x" name="(S)-3-hydroxypalmitoleoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C37H60N7O18P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00177x">
+            <rdf:Description rdf:about="#M_MAM00177x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM31749"/>
@@ -5952,10 +5951,10 @@
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-      <species metaid="MAM00178m" sboTerm="SBO:0000247" id="MAM00178m" name="(S)-3-hydroxytetradecanoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C35H58N7O18P3S">
+      <species metaid="M_MAM00178m" sboTerm="SBO:0000247" id="M_MAM00178m" name="(S)-3-hydroxytetradecanoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C35H58N7O18P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00178m">
+            <rdf:Description rdf:about="#M_MAM00178m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:27466"/>
@@ -5970,10 +5969,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM00178x" sboTerm="SBO:0000247" id="MAM00178x" name="(S)-3-hydroxytetradecanoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C35H58N7O18P3S">
+      <species metaid="M_MAM00178x" sboTerm="SBO:0000247" id="M_MAM00178x" name="(S)-3-hydroxytetradecanoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C35H58N7O18P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00178x">
+            <rdf:Description rdf:about="#M_MAM00178x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:27466"/>
@@ -5988,10 +5987,10 @@
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-      <species metaid="MAM00179c" sboTerm="SBO:0000247" id="MAM00179c" name="(S)-3-sulfolactate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C3H4O6S">
+      <species metaid="M_MAM00179c" sboTerm="SBO:0000247" id="M_MAM00179c" name="(S)-3-sulfolactate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C3H4O6S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00179c">
+            <rdf:Description rdf:about="#M_MAM00179c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/sl__L"/>
@@ -6006,10 +6005,10 @@
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-      <species metaid="MAM00179m" sboTerm="SBO:0000247" id="MAM00179m" name="(S)-3-sulfolactate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C3H4O6S">
+      <species metaid="M_MAM00179m" sboTerm="SBO:0000247" id="M_MAM00179m" name="(S)-3-sulfolactate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C3H4O6S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00179m">
+            <rdf:Description rdf:about="#M_MAM00179m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/sl__L"/>
@@ -6024,10 +6023,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM00179e" sboTerm="SBO:0000247" id="MAM00179e" name="(S)-3-sulfolactate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C3H4O6S">
+      <species metaid="M_MAM00179e" sboTerm="SBO:0000247" id="M_MAM00179e" name="(S)-3-sulfolactate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C3H4O6S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00179e">
+            <rdf:Description rdf:about="#M_MAM00179e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/sl__L"/>
@@ -6042,10 +6041,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM00180c" sboTerm="SBO:0000247" id="MAM00180c" name="(S)-dihydroorotate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C5H5N2O4">
+      <species metaid="M_MAM00180c" sboTerm="SBO:0000247" id="M_MAM00180c" name="(S)-dihydroorotate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C5H5N2O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00180c">
+            <rdf:Description rdf:about="#M_MAM00180c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dhor__S"/>
@@ -6059,10 +6058,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00181m" sboTerm="SBO:0000247" id="MAM00181m" name="(S)-hydroxydecanoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C31H50N7O18P3S">
+      <species metaid="M_MAM00181m" sboTerm="SBO:0000247" id="M_MAM00181m" name="(S)-hydroxydecanoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C31H50N7O18P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00181m">
+            <rdf:Description rdf:about="#M_MAM00181m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:28325"/>
@@ -6077,10 +6076,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00181x" sboTerm="SBO:0000247" id="MAM00181x" name="(S)-hydroxydecanoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C31H50N7O18P3S">
+      <species metaid="M_MAM00181x" sboTerm="SBO:0000247" id="M_MAM00181x" name="(S)-hydroxydecanoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C31H50N7O18P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00181x">
+            <rdf:Description rdf:about="#M_MAM00181x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:28325"/>
@@ -6095,10 +6094,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00182m" sboTerm="SBO:0000247" id="MAM00182m" name="(S)-hydroxyhexanoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C27H42N7O18P3S">
+      <species metaid="M_MAM00182m" sboTerm="SBO:0000247" id="M_MAM00182m" name="(S)-hydroxyhexanoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C27H42N7O18P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00182m">
+            <rdf:Description rdf:about="#M_MAM00182m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:28276"/>
@@ -6113,10 +6112,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM00182x" sboTerm="SBO:0000247" id="MAM00182x" name="(S)-hydroxyhexanoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C27H42N7O18P3S">
+      <species metaid="M_MAM00182x" sboTerm="SBO:0000247" id="M_MAM00182x" name="(S)-hydroxyhexanoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C27H42N7O18P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00182x">
+            <rdf:Description rdf:about="#M_MAM00182x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:28276"/>
@@ -6131,10 +6130,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00183m" sboTerm="SBO:0000247" id="MAM00183m" name="(S)-hydroxyoctanoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C29H46N7O18P3S">
+      <species metaid="M_MAM00183m" sboTerm="SBO:0000247" id="M_MAM00183m" name="(S)-hydroxyoctanoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C29H46N7O18P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00183m">
+            <rdf:Description rdf:about="#M_MAM00183m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:28632"/>
@@ -6149,10 +6148,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00183x" sboTerm="SBO:0000247" id="MAM00183x" name="(S)-hydroxyoctanoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C29H46N7O18P3S">
+      <species metaid="M_MAM00183x" sboTerm="SBO:0000247" id="M_MAM00183x" name="(S)-hydroxyoctanoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C29H46N7O18P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00183x">
+            <rdf:Description rdf:about="#M_MAM00183x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:28632"/>
@@ -6167,10 +6166,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00184c" sboTerm="SBO:0000247" id="MAM00184c" name="[ACP]" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C11H21N2O7PRS">
+      <species metaid="M_MAM00184c" sboTerm="SBO:0000247" id="M_MAM00184c" name="[ACP]" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C11H21N2O7PRS">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00184c">
+            <rdf:Description rdf:about="#M_MAM00184c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ACP"/>
@@ -6183,10 +6182,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00185c" sboTerm="SBO:0000247" id="MAM00185c" name="[apocarboxlase]" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="XH">
+      <species metaid="M_MAM00185c" sboTerm="SBO:0000247" id="M_MAM00185c" name="[apocarboxlase]" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="XH">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00185c">
+            <rdf:Description rdf:about="#M_MAM00185c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/apoC"/>
@@ -6198,10 +6197,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00186c" sboTerm="SBO:0000247" id="MAM00186c" name="[apotransferin]" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C3389H5282N934O1021S50">
+      <species metaid="M_MAM00186c" sboTerm="SBO:0000247" id="M_MAM00186c" name="[apotransferin]" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C3389H5282N934O1021S50">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00186c">
+            <rdf:Description rdf:about="#M_MAM00186c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C05780"/>
@@ -6214,10 +6213,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00186l" sboTerm="SBO:0000247" id="MAM00186l" name="[apotransferin]" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C3389H5282N934O1021S50">
+      <species metaid="M_MAM00186l" sboTerm="SBO:0000247" id="M_MAM00186l" name="[apotransferin]" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C3389H5282N934O1021S50">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00186l">
+            <rdf:Description rdf:about="#M_MAM00186l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C05780"/>
@@ -6230,10 +6229,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00186e" sboTerm="SBO:0000247" id="MAM00186e" name="[apotransferin]" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C3389H5282N934O1021S50">
+      <species metaid="M_MAM00186e" sboTerm="SBO:0000247" id="M_MAM00186e" name="[apotransferin]" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C3389H5282N934O1021S50">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00186e">
+            <rdf:Description rdf:about="#M_MAM00186e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C05780"/>
@@ -6246,10 +6245,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00187c" sboTerm="SBO:0000247" id="MAM00187c" name="[beta-adrenergic-receptor]" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H6N2O3R2">
+      <species metaid="M_MAM00187c" sboTerm="SBO:0000247" id="M_MAM00187c" name="[beta-adrenergic-receptor]" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H6N2O3R2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00187c">
+            <rdf:Description rdf:about="#M_MAM00187c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C01141"/>
@@ -6261,10 +6260,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00188c" sboTerm="SBO:0000247" id="MAM00188c" name="[methionine synthase]-cob(II)alamin" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C69H97CoN17O16PR2">
+      <species metaid="M_MAM00188c" sboTerm="SBO:0000247" id="M_MAM00188c" name="[methionine synthase]-cob(II)alamin" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C69H97CoN17O16PR2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00188c">
+            <rdf:Description rdf:about="#M_MAM00188c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C06409"/>
@@ -6276,10 +6275,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00189c" sboTerm="SBO:0000247" id="MAM00189c" name="[methionine synthase]-methylcob(I)alamin" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C70H100CoN17O16PR2">
+      <species metaid="M_MAM00189c" sboTerm="SBO:0000247" id="M_MAM00189c" name="[methionine synthase]-methylcob(I)alamin" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C70H100CoN17O16PR2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00189c">
+            <rdf:Description rdf:about="#M_MAM00189c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C06410"/>
@@ -6291,10 +6290,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00190c" sboTerm="SBO:0000247" id="MAM00190c" name="[myosin light chain]" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H6N2O3R2">
+      <species metaid="M_MAM00190c" sboTerm="SBO:0000247" id="M_MAM00190c" name="[myosin light chain]" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H6N2O3R2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00190c">
+            <rdf:Description rdf:about="#M_MAM00190c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C01003"/>
@@ -6306,10 +6305,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00191c" sboTerm="SBO:0000247" id="MAM00191c" name="[myosin light chain]-phosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C4H6N2O6PR2">
+      <species metaid="M_MAM00191c" sboTerm="SBO:0000247" id="M_MAM00191c" name="[myosin light chain]-phosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C4H6N2O6PR2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00191c">
+            <rdf:Description rdf:about="#M_MAM00191c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C03875"/>
@@ -6321,10 +6320,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00192c" sboTerm="SBO:0000247" id="MAM00192c" name="[phosphorylase A]" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="O12P4X2">
+      <species metaid="M_MAM00192c" sboTerm="SBO:0000247" id="M_MAM00192c" name="[phosphorylase A]" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="O12P4X2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00192c">
+            <rdf:Description rdf:about="#M_MAM00192c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C02307"/>
@@ -6336,10 +6335,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00193c" sboTerm="SBO:0000247" id="MAM00193c" name="[phosphorylase B]" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="X">
+      <species metaid="M_MAM00193c" sboTerm="SBO:0000247" id="M_MAM00193c" name="[phosphorylase B]" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="X">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00193c">
+            <rdf:Description rdf:about="#M_MAM00193c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C02308"/>
@@ -6351,10 +6350,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00194c" sboTerm="SBO:0000247" id="MAM00194c" name="[protein C terminal]-S-farnesyl-L-cysteine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C19H29NO3SR">
+      <species metaid="M_MAM00194c" sboTerm="SBO:0000247" id="M_MAM00194c" name="[protein C terminal]-S-farnesyl-L-cysteine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C19H29NO3SR">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00194c">
+            <rdf:Description rdf:about="#M_MAM00194c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C04506"/>
@@ -6366,10 +6365,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00195c" sboTerm="SBO:0000247" id="MAM00195c" name="[protein C terminal]-S-farnesyl-L-cysteine-methyl ester" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H32NO3SR">
+      <species metaid="M_MAM00195c" sboTerm="SBO:0000247" id="M_MAM00195c" name="[protein C terminal]-S-farnesyl-L-cysteine-methyl ester" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H32NO3SR">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00195c">
+            <rdf:Description rdf:about="#M_MAM00195c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C04748"/>
@@ -6381,10 +6380,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00196c" sboTerm="SBO:0000247" id="MAM00196c" name="[protein]" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="X">
+      <species metaid="M_MAM00196c" sboTerm="SBO:0000247" id="M_MAM00196c" name="[protein]" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="X">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00196c">
+            <rdf:Description rdf:about="#M_MAM00196c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:16541"/>
@@ -6398,10 +6397,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00197c" sboTerm="SBO:0000247" id="MAM00197c" name="[protein]-L-arginine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C7H14N5O2R2">
+      <species metaid="M_MAM00197c" sboTerm="SBO:0000247" id="M_MAM00197c" name="[protein]-L-arginine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C7H14N5O2R2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00197c">
+            <rdf:Description rdf:about="#M_MAM00197c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C00613"/>
@@ -6413,10 +6412,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00198c" sboTerm="SBO:0000247" id="MAM00198c" name="[protein]-L-asparagine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="XH">
+      <species metaid="M_MAM00198c" sboTerm="SBO:0000247" id="M_MAM00198c" name="[protein]-L-asparagine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="XH">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00198c">
+            <rdf:Description rdf:about="#M_MAM00198c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/Asn_X_Ser_Thr"/>
@@ -6429,10 +6428,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00198l" sboTerm="SBO:0000247" id="MAM00198l" name="[protein]-L-asparagine" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="XH">
+      <species metaid="M_MAM00198l" sboTerm="SBO:0000247" id="M_MAM00198l" name="[protein]-L-asparagine" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="XH">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00198l">
+            <rdf:Description rdf:about="#M_MAM00198l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/Asn_X_Ser_Thr"/>
@@ -6445,10 +6444,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00198r" sboTerm="SBO:0000247" id="MAM00198r" name="[protein]-L-asparagine" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="XH">
+      <species metaid="M_MAM00198r" sboTerm="SBO:0000247" id="M_MAM00198r" name="[protein]-L-asparagine" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="XH">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00198r">
+            <rdf:Description rdf:about="#M_MAM00198r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/Asn_X_Ser_Thr"/>
@@ -6461,10 +6460,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00199c" sboTerm="SBO:0000247" id="MAM00199c" name="[protein]-L-citrulline" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H12N4O3R2">
+      <species metaid="M_MAM00199c" sboTerm="SBO:0000247" id="M_MAM00199c" name="[protein]-L-citrulline" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H12N4O3R2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00199c">
+            <rdf:Description rdf:about="#M_MAM00199c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C03022"/>
@@ -6476,10 +6475,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00200c" sboTerm="SBO:0000247" id="MAM00200c" name="[protein]-L-cysteine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H6N2O2SR2">
+      <species metaid="M_MAM00200c" sboTerm="SBO:0000247" id="M_MAM00200c" name="[protein]-L-cysteine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H6N2O2SR2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00200c">
+            <rdf:Description rdf:about="#M_MAM00200c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C02743"/>
@@ -6491,10 +6490,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00201c" sboTerm="SBO:0000247" id="MAM00201c" name="[protein]-L-glutamine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H9N3O3R2">
+      <species metaid="M_MAM00201c" sboTerm="SBO:0000247" id="M_MAM00201c" name="[protein]-L-glutamine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H9N3O3R2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00201c">
+            <rdf:Description rdf:about="#M_MAM00201c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C02583"/>
@@ -6506,10 +6505,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00202c" sboTerm="SBO:0000247" id="MAM00202c" name="[protein]-L-isoaspartate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H6N2O4R2">
+      <species metaid="M_MAM00202c" sboTerm="SBO:0000247" id="M_MAM00202c" name="[protein]-L-isoaspartate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H6N2O4R2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00202c">
+            <rdf:Description rdf:about="#M_MAM00202c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C03306"/>
@@ -6521,10 +6520,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00203c" sboTerm="SBO:0000247" id="MAM00203c" name="[protein]-L-isoaspartate-methyl ester" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H8N2O4R2">
+      <species metaid="M_MAM00203c" sboTerm="SBO:0000247" id="M_MAM00203c" name="[protein]-L-isoaspartate-methyl ester" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H8N2O4R2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00203c">
+            <rdf:Description rdf:about="#M_MAM00203c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C04311"/>
@@ -6536,10 +6535,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00204c" sboTerm="SBO:0000247" id="MAM00204c" name="[protein]-L-lysine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C7H14N3O2R2">
+      <species metaid="M_MAM00204c" sboTerm="SBO:0000247" id="M_MAM00204c" name="[protein]-L-lysine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C7H14N3O2R2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00204c">
+            <rdf:Description rdf:about="#M_MAM00204c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/peplys"/>
@@ -6552,10 +6551,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00204n" sboTerm="SBO:0000247" id="MAM00204n" name="[protein]-L-lysine" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C7H14N3O2R2">
+      <species metaid="M_MAM00204n" sboTerm="SBO:0000247" id="M_MAM00204n" name="[protein]-L-lysine" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C7H14N3O2R2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00204n">
+            <rdf:Description rdf:about="#M_MAM00204n">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/peplys"/>
@@ -6568,10 +6567,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00204e" sboTerm="SBO:0000247" id="MAM00204e" name="[protein]-L-lysine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C7H14N3O2R2">
+      <species metaid="M_MAM00204e" sboTerm="SBO:0000247" id="M_MAM00204e" name="[protein]-L-lysine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C7H14N3O2R2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00204e">
+            <rdf:Description rdf:about="#M_MAM00204e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/peplys"/>
@@ -6584,10 +6583,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00205c" sboTerm="SBO:0000247" id="MAM00205c" name="[protein]-L-serine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="XH">
+      <species metaid="M_MAM00205c" sboTerm="SBO:0000247" id="M_MAM00205c" name="[protein]-L-serine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="XH">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00205c">
+            <rdf:Description rdf:about="#M_MAM00205c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/Ser_Gly_Ala_X_Gly"/>
@@ -6600,10 +6599,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00205g" sboTerm="SBO:0000247" id="MAM00205g" name="[protein]-L-serine" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="XH">
+      <species metaid="M_MAM00205g" sboTerm="SBO:0000247" id="M_MAM00205g" name="[protein]-L-serine" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="XH">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00205g">
+            <rdf:Description rdf:about="#M_MAM00205g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/Ser_Gly_Ala_X_Gly"/>
@@ -6616,10 +6615,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00205l" sboTerm="SBO:0000247" id="MAM00205l" name="[protein]-L-serine" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="XH">
+      <species metaid="M_MAM00205l" sboTerm="SBO:0000247" id="M_MAM00205l" name="[protein]-L-serine" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="XH">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00205l">
+            <rdf:Description rdf:about="#M_MAM00205l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/Ser_Gly_Ala_X_Gly"/>
@@ -6632,10 +6631,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00205r" sboTerm="SBO:0000247" id="MAM00205r" name="[protein]-L-serine" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="XH">
+      <species metaid="M_MAM00205r" sboTerm="SBO:0000247" id="M_MAM00205r" name="[protein]-L-serine" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="XH">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00205r">
+            <rdf:Description rdf:about="#M_MAM00205r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/Ser_Gly_Ala_X_Gly"/>
@@ -6648,10 +6647,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00206c" sboTerm="SBO:0000247" id="MAM00206c" name="[protein]-L-tyrosine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H10N2O3R2">
+      <species metaid="M_MAM00206c" sboTerm="SBO:0000247" id="M_MAM00206c" name="[protein]-L-tyrosine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H10N2O3R2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00206c">
+            <rdf:Description rdf:about="#M_MAM00206c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C00585"/>
@@ -6663,10 +6662,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00207c" sboTerm="SBO:0000247" id="MAM00207c" name="[protein]-N5-alkylglutamine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H8N3O3R3">
+      <species metaid="M_MAM00207c" sboTerm="SBO:0000247" id="M_MAM00207c" name="[protein]-N5-alkylglutamine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H8N3O3R3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00207c">
+            <rdf:Description rdf:about="#M_MAM00207c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C03636"/>
@@ -6678,10 +6677,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00208c" sboTerm="SBO:0000247" id="MAM00208c" name="[protein]-N6-(dihydrolipoyl)lysine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C1375H2187N381O420S6">
+      <species metaid="M_MAM00208c" sboTerm="SBO:0000247" id="M_MAM00208c" name="[protein]-N6-(dihydrolipoyl)lysine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C1375H2187N381O420S6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00208c">
+            <rdf:Description rdf:about="#M_MAM00208c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C16832"/>
@@ -6693,10 +6692,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00209c" sboTerm="SBO:0000247" id="MAM00209c" name="[protein]-N6-(lipoyl)lysine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C1375H2185N381O420S6">
+      <species metaid="M_MAM00209c" sboTerm="SBO:0000247" id="M_MAM00209c" name="[protein]-N6-(lipoyl)lysine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C1375H2185N381O420S6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00209c">
+            <rdf:Description rdf:about="#M_MAM00209c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C16237"/>
@@ -6708,10 +6707,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00210c" sboTerm="SBO:0000247" id="MAM00210c" name="[protein]-N6-(octanoyl)lysine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C1375H2187N381O420S4">
+      <species metaid="M_MAM00210c" sboTerm="SBO:0000247" id="M_MAM00210c" name="[protein]-N6-(octanoyl)lysine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C1375H2187N381O420S4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00210c">
+            <rdf:Description rdf:about="#M_MAM00210c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C16236"/>
@@ -6723,10 +6722,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00211c" sboTerm="SBO:0000247" id="MAM00211c" name="[protein]-N6,N6,N6-trimethyl-L-lysine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C10H20N3O2R2">
+      <species metaid="M_MAM00211c" sboTerm="SBO:0000247" id="M_MAM00211c" name="[protein]-N6,N6,N6-trimethyl-L-lysine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C10H20N3O2R2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00211c">
+            <rdf:Description rdf:about="#M_MAM00211c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/Ntmelys"/>
@@ -6739,10 +6738,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00211n" sboTerm="SBO:0000247" id="MAM00211n" name="[protein]-N6,N6,N6-trimethyl-L-lysine" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C10H20N3O2R2">
+      <species metaid="M_MAM00211n" sboTerm="SBO:0000247" id="M_MAM00211n" name="[protein]-N6,N6,N6-trimethyl-L-lysine" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C10H20N3O2R2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00211n">
+            <rdf:Description rdf:about="#M_MAM00211n">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/Ntmelys"/>
@@ -6755,10 +6754,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00211r" sboTerm="SBO:0000247" id="MAM00211r" name="[protein]-N6,N6,N6-trimethyl-L-lysine" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C10H20N3O2R2">
+      <species metaid="M_MAM00211r" sboTerm="SBO:0000247" id="M_MAM00211r" name="[protein]-N6,N6,N6-trimethyl-L-lysine" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C10H20N3O2R2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00211r">
+            <rdf:Description rdf:about="#M_MAM00211r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/Ntmelys"/>
@@ -6771,10 +6770,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00212c" sboTerm="SBO:0000247" id="MAM00212c" name="[protein]-N6,N6-dimethyl-L-lysine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C9H18N3O2R2">
+      <species metaid="M_MAM00212c" sboTerm="SBO:0000247" id="M_MAM00212c" name="[protein]-N6,N6-dimethyl-L-lysine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C9H18N3O2R2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00212c">
+            <rdf:Description rdf:about="#M_MAM00212c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/Ndmelys"/>
@@ -6787,10 +6786,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00212n" sboTerm="SBO:0000247" id="MAM00212n" name="[protein]-N6,N6-dimethyl-L-lysine" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C9H18N3O2R2">
+      <species metaid="M_MAM00212n" sboTerm="SBO:0000247" id="M_MAM00212n" name="[protein]-N6,N6-dimethyl-L-lysine" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C9H18N3O2R2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00212n">
+            <rdf:Description rdf:about="#M_MAM00212n">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/Ndmelys"/>
@@ -6803,10 +6802,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00213c" sboTerm="SBO:0000247" id="MAM00213c" name="[protein]-N6-methyl-L-lysine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C8H16N3O2R2">
+      <species metaid="M_MAM00213c" sboTerm="SBO:0000247" id="M_MAM00213c" name="[protein]-N6-methyl-L-lysine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C8H16N3O2R2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00213c">
+            <rdf:Description rdf:about="#M_MAM00213c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C05544"/>
@@ -6818,10 +6817,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00214c" sboTerm="SBO:0000247" id="MAM00214c" name="[protein]-N-ubiquityllysine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H13N3O3R3">
+      <species metaid="M_MAM00214c" sboTerm="SBO:0000247" id="M_MAM00214c" name="[protein]-N-ubiquityllysine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H13N3O3R3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00214c">
+            <rdf:Description rdf:about="#M_MAM00214c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C03635"/>
@@ -6833,10 +6832,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00215c" sboTerm="SBO:0000247" id="MAM00215c" name="[protein]-omega-N-(ADP-D-ribosyl)-L-arginine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C22H33N10O15P2R2">
+      <species metaid="M_MAM00215c" sboTerm="SBO:0000247" id="M_MAM00215c" name="[protein]-omega-N-(ADP-D-ribosyl)-L-arginine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C22H33N10O15P2R2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00215c">
+            <rdf:Description rdf:about="#M_MAM00215c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C16011"/>
@@ -6848,10 +6847,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00216c" sboTerm="SBO:0000247" id="MAM00216c" name="[protein]-S-methyl-L-cysteine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H8N2O2SR2">
+      <species metaid="M_MAM00216c" sboTerm="SBO:0000247" id="M_MAM00216c" name="[protein]-S-methyl-L-cysteine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H8N2O2SR2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00216c">
+            <rdf:Description rdf:about="#M_MAM00216c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C03800"/>
@@ -6863,10 +6862,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00217c" sboTerm="SBO:0000247" id="MAM00217c" name="[protein]-tyrosine-O-sulfate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H9N2O6R2S">
+      <species metaid="M_MAM00217c" sboTerm="SBO:0000247" id="M_MAM00217c" name="[protein]-tyrosine-O-sulfate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H9N2O6R2S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00217c">
+            <rdf:Description rdf:about="#M_MAM00217c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C03721"/>
@@ -6878,10 +6877,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00219c" sboTerm="SBO:0000247" id="MAM00219c" name="[pyruvate dehydrogenase (acetyl transferring)]" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H6N2O3R2">
+      <species metaid="M_MAM00219c" sboTerm="SBO:0000247" id="M_MAM00219c" name="[pyruvate dehydrogenase (acetyl transferring)]" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H6N2O3R2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00219c">
+            <rdf:Description rdf:about="#M_MAM00219c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C01256"/>
@@ -6893,10 +6892,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00220c" sboTerm="SBO:0000247" id="MAM00220c" name="[pyruvate dehydrogenase (acetyl transferring)]-phosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C4H5N2O6PR2">
+      <species metaid="M_MAM00220c" sboTerm="SBO:0000247" id="M_MAM00220c" name="[pyruvate dehydrogenase (acetyl transferring)]-phosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C4H5N2O6PR2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00220c">
+            <rdf:Description rdf:about="#M_MAM00220c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C01293"/>
@@ -6908,10 +6907,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00221c" sboTerm="SBO:0000247" id="MAM00221c" name="1-(1,2,3,4,5-pentahydroxypent-1-yl)-1,2,3,4-tetrahydro-beta-carboline-3-carboxylate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C17H22N2O7">
+      <species metaid="M_MAM00221c" sboTerm="SBO:0000247" id="M_MAM00221c" name="1-(1,2,3,4,5-pentahydroxypent-1-yl)-1,2,3,4-tetrahydro-beta-carboline-3-carboxylate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C17H22N2O7">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00221c">
+            <rdf:Description rdf:about="#M_MAM00221c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM32416"/>
@@ -6923,10 +6922,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00223c" sboTerm="SBO:0000247" id="MAM00223c" name="1-(1-alkenyl)-sn-glycero-3-phosphoethanolamine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H15NO6PR">
+      <species metaid="M_MAM00223c" sboTerm="SBO:0000247" id="M_MAM00223c" name="1-(1-alkenyl)-sn-glycero-3-phosphoethanolamine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H15NO6PR">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00223c">
+            <rdf:Description rdf:about="#M_MAM00223c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:15785"/>
@@ -6939,10 +6938,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00225c" sboTerm="SBO:0000247" id="MAM00225c" name="1-(3-pyridinyl)-1,4-butanediol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H13NO2">
+      <species metaid="M_MAM00225c" sboTerm="SBO:0000247" id="M_MAM00225c" name="1-(3-pyridinyl)-1,4-butanediol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H13NO2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00225c">
+            <rdf:Description rdf:about="#M_MAM00225c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C19582"/>
@@ -6954,10 +6953,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00226c" sboTerm="SBO:0000247" id="MAM00226c" name="1-(methylnitrosoamino)-4-(3-pyridinyl)-1,4-butanediol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H15N3O3">
+      <species metaid="M_MAM00226c" sboTerm="SBO:0000247" id="M_MAM00226c" name="1-(methylnitrosoamino)-4-(3-pyridinyl)-1,4-butanediol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H15N3O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00226c">
+            <rdf:Description rdf:about="#M_MAM00226c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C19577"/>
@@ -6969,10 +6968,10 @@
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-      <species metaid="MAM00227c" sboTerm="SBO:0000247" id="MAM00227c" name="1,1-dichloroethylene epoxide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C2H2Cl2O">
+      <species metaid="M_MAM00227c" sboTerm="SBO:0000247" id="M_MAM00227c" name="1,1-dichloroethylene epoxide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C2H2Cl2O">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00227c">
+            <rdf:Description rdf:about="#M_MAM00227c">
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                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C14857"/>
@@ -6984,10 +6983,10 @@
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-      <species metaid="MAM00228c" sboTerm="SBO:0000247" id="MAM00228c" name="1,1-dichloroethylene" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C2H2Cl2">
+      <species metaid="M_MAM00228c" sboTerm="SBO:0000247" id="M_MAM00228c" name="1,1-dichloroethylene" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C2H2Cl2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00228c">
+            <rdf:Description rdf:about="#M_MAM00228c">
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@@ -7000,10 +6999,10 @@
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-      <species metaid="MAM00228e" sboTerm="SBO:0000247" id="MAM00228e" name="1,1-dichloroethylene" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C2H2Cl2">
+      <species metaid="M_MAM00228e" sboTerm="SBO:0000247" id="M_MAM00228e" name="1,1-dichloroethylene" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C2H2Cl2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00228e">
+            <rdf:Description rdf:about="#M_MAM00228e">
               <bqbiol:is>
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                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:34031"/>
@@ -7016,10 +7015,10 @@
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-      <species metaid="MAM00230c" sboTerm="SBO:0000247" id="MAM00230c" name="1,2,3,4-tetrahydro-beta-carboline" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C11H13N2">
+      <species metaid="M_MAM00230c" sboTerm="SBO:0000247" id="M_MAM00230c" name="1,2,3,4-tetrahydro-beta-carboline" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C11H13N2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00230c">
+            <rdf:Description rdf:about="#M_MAM00230c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM32042"/>
@@ -7031,10 +7030,10 @@
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-      <species metaid="MAM00231c" sboTerm="SBO:0000247" id="MAM00231c" name="1,2-dehydrosalsolinol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H11NO2">
+      <species metaid="M_MAM00231c" sboTerm="SBO:0000247" id="M_MAM00231c" name="1,2-dehydrosalsolinol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H11NO2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00231c">
+            <rdf:Description rdf:about="#M_MAM00231c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM32113"/>
@@ -7046,10 +7045,10 @@
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-      <species metaid="MAM00232c" sboTerm="SBO:0000247" id="MAM00232c" name="1,2-D-glucosyl-5-D-(galactosyloxy)-L-lysine-procollagen" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C19H34N3O13R2">
+      <species metaid="M_MAM00232c" sboTerm="SBO:0000247" id="M_MAM00232c" name="1,2-D-glucosyl-5-D-(galactosyloxy)-L-lysine-procollagen" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C19H34N3O13R2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00232c">
+            <rdf:Description rdf:about="#M_MAM00232c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C04759"/>
@@ -7061,10 +7060,10 @@
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         </annotation>
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-      <species metaid="MAM00233c" sboTerm="SBO:0000247" id="MAM00233c" name="1,2-diacylglycerol-bile-PC pool" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H6O5R2">
+      <species metaid="M_MAM00233c" sboTerm="SBO:0000247" id="M_MAM00233c" name="1,2-diacylglycerol-bile-PC pool" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H6O5R2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00233c">
+            <rdf:Description rdf:about="#M_MAM00233c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:17815"/>
@@ -7078,10 +7077,10 @@
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         </annotation>
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-      <species metaid="MAM00234e" sboTerm="SBO:0000247" id="MAM00234e" name="1,2-diacylglycerol-chylomicron pool" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H6O5R2">
+      <species metaid="M_MAM00234e" sboTerm="SBO:0000247" id="M_MAM00234e" name="1,2-diacylglycerol-chylomicron pool" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H6O5R2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00234e">
+            <rdf:Description rdf:about="#M_MAM00234e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:17815"/>
@@ -7095,10 +7094,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM00235c" sboTerm="SBO:0000247" id="MAM00235c" name="1,2-diacylglycerol-LD-PC pool" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H6O5R2">
+      <species metaid="M_MAM00235c" sboTerm="SBO:0000247" id="M_MAM00235c" name="1,2-diacylglycerol-LD-PC pool" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H6O5R2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00235c">
+            <rdf:Description rdf:about="#M_MAM00235c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:17815"/>
@@ -7112,10 +7111,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM00236c" sboTerm="SBO:0000247" id="MAM00236c" name="1,2-diacylglycerol-LD-PE pool" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H6O5R2">
+      <species metaid="M_MAM00236c" sboTerm="SBO:0000247" id="M_MAM00236c" name="1,2-diacylglycerol-LD-PE pool" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H6O5R2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00236c">
+            <rdf:Description rdf:about="#M_MAM00236c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:17815"/>
@@ -7129,10 +7128,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00236r" sboTerm="SBO:0000247" id="MAM00236r" name="1,2-diacylglycerol-LD-PE pool" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H6O5R2">
+      <species metaid="M_MAM00236r" sboTerm="SBO:0000247" id="M_MAM00236r" name="1,2-diacylglycerol-LD-PE pool" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H6O5R2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00236r">
+            <rdf:Description rdf:about="#M_MAM00236r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:17815"/>
@@ -7146,10 +7145,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM00237c" sboTerm="SBO:0000247" id="MAM00237c" name="1,2-diacylglycerol-LD-PI pool" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H6O5R2">
+      <species metaid="M_MAM00237c" sboTerm="SBO:0000247" id="M_MAM00237c" name="1,2-diacylglycerol-LD-PI pool" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H6O5R2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00237c">
+            <rdf:Description rdf:about="#M_MAM00237c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:17815"/>
@@ -7163,10 +7162,10 @@
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         </annotation>
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-      <species metaid="MAM00238c" sboTerm="SBO:0000247" id="MAM00238c" name="1,2-diacylglycerol-LD-PS pool" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H6O5R2">
+      <species metaid="M_MAM00238c" sboTerm="SBO:0000247" id="M_MAM00238c" name="1,2-diacylglycerol-LD-PS pool" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H6O5R2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00238c">
+            <rdf:Description rdf:about="#M_MAM00238c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:17815"/>
@@ -7180,10 +7179,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM00239c" sboTerm="SBO:0000247" id="MAM00239c" name="1,2-diacylglycerol-LD-SM pool" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H6O5R2">
+      <species metaid="M_MAM00239c" sboTerm="SBO:0000247" id="M_MAM00239c" name="1,2-diacylglycerol-LD-SM pool" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H6O5R2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00239c">
+            <rdf:Description rdf:about="#M_MAM00239c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:17815"/>
@@ -7197,10 +7196,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM00240c" sboTerm="SBO:0000247" id="MAM00240c" name="1,2-diacylglycerol-LD-TAG pool" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H6O5R2">
+      <species metaid="M_MAM00240c" sboTerm="SBO:0000247" id="M_MAM00240c" name="1,2-diacylglycerol-LD-TAG pool" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H6O5R2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00240c">
+            <rdf:Description rdf:about="#M_MAM00240c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dag_hs"/>
@@ -7215,10 +7214,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00240g" sboTerm="SBO:0000247" id="MAM00240g" name="1,2-diacylglycerol-LD-TAG pool" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H6O5R2">
+      <species metaid="M_MAM00240g" sboTerm="SBO:0000247" id="M_MAM00240g" name="1,2-diacylglycerol-LD-TAG pool" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H6O5R2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00240g">
+            <rdf:Description rdf:about="#M_MAM00240g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dag_hs"/>
@@ -7233,10 +7232,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00240n" sboTerm="SBO:0000247" id="MAM00240n" name="1,2-diacylglycerol-LD-TAG pool" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H6O5R2">
+      <species metaid="M_MAM00240n" sboTerm="SBO:0000247" id="M_MAM00240n" name="1,2-diacylglycerol-LD-TAG pool" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H6O5R2">
         <annotation>
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-            <rdf:Description rdf:about="#MAM00240n">
+            <rdf:Description rdf:about="#M_MAM00240n">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dag_hs"/>
@@ -7251,10 +7250,10 @@
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-      <species metaid="MAM00241e" sboTerm="SBO:0000247" id="MAM00241e" name="1,2-diacylglycerol-VLDL pool" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H6O5R2">
+      <species metaid="M_MAM00241e" sboTerm="SBO:0000247" id="M_MAM00241e" name="1,2-diacylglycerol-VLDL pool" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H6O5R2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00241e">
+            <rdf:Description rdf:about="#M_MAM00241e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:17815"/>
@@ -7268,10 +7267,10 @@
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-      <species metaid="MAM00242c" sboTerm="SBO:0000247" id="MAM00242c" name="1,2-dibromoethane" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C2H4Br2">
+      <species metaid="M_MAM00242c" sboTerm="SBO:0000247" id="M_MAM00242c" name="1,2-dibromoethane" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C2H4Br2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00242c">
+            <rdf:Description rdf:about="#M_MAM00242c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C11088"/>
@@ -7283,10 +7282,10 @@
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-      <species metaid="MAM00242e" sboTerm="SBO:0000247" id="MAM00242e" name="1,2-dibromoethane" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C2H4Br2">
+      <species metaid="M_MAM00242e" sboTerm="SBO:0000247" id="M_MAM00242e" name="1,2-dibromoethane" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C2H4Br2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00242e">
+            <rdf:Description rdf:about="#M_MAM00242e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C11088"/>
@@ -7298,10 +7297,10 @@
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-      <species metaid="MAM00243c" sboTerm="SBO:0000247" id="MAM00243c" name="1,2-dihydronaphthalene-1,2-diol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H10O2">
+      <species metaid="M_MAM00243c" sboTerm="SBO:0000247" id="M_MAM00243c" name="1,2-dihydronaphthalene-1,2-diol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H10O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00243c">
+            <rdf:Description rdf:about="#M_MAM00243c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:28516"/>
@@ -7314,10 +7313,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM00244c" sboTerm="SBO:0000247" id="MAM00244c" name="1,2-dihydroxy-3,4-epoxy-1,2,3,4-tetrahydronaphthalene" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H10O3">
+      <species metaid="M_MAM00244c" sboTerm="SBO:0000247" id="M_MAM00244c" name="1,2-dihydroxy-3,4-epoxy-1,2,3,4-tetrahydronaphthalene" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H10O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00244c">
+            <rdf:Description rdf:about="#M_MAM00244c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:34048"/>
@@ -7330,10 +7329,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM00245c" sboTerm="SBO:0000247" id="MAM00245c" name="1,2-dihydroxy-5-(methylthio)pent-1-en-3-one" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H10O3S">
+      <species metaid="M_MAM00245c" sboTerm="SBO:0000247" id="M_MAM00245c" name="1,2-dihydroxy-5-(methylthio)pent-1-en-3-one" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H10O3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00245c">
+            <rdf:Description rdf:about="#M_MAM00245c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dhmtp"/>
@@ -7348,10 +7347,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00246c" sboTerm="SBO:0000247" id="MAM00246c" name="1,2-naphthoquinone" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H6O2">
+      <species metaid="M_MAM00246c" sboTerm="SBO:0000247" id="M_MAM00246c" name="1,2-naphthoquinone" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H6O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00246c">
+            <rdf:Description rdf:about="#M_MAM00246c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C14783"/>
@@ -7363,10 +7362,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM00247c" sboTerm="SBO:0000247" id="MAM00247c" name="1,3-bisphospho-D-glycerate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C3H4O10P2">
+      <species metaid="M_MAM00247c" sboTerm="SBO:0000247" id="M_MAM00247c" name="1,3-bisphospho-D-glycerate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C3H4O10P2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00247c">
+            <rdf:Description rdf:about="#M_MAM00247c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/13dpg"/>
@@ -7381,10 +7380,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00248c" sboTerm="SBO:0000247" id="MAM00248c" name="1,3-diaminopropane" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="C3H12N2">
+      <species metaid="M_MAM00248c" sboTerm="SBO:0000247" id="M_MAM00248c" name="1,3-diaminopropane" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="C3H12N2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00248c">
+            <rdf:Description rdf:about="#M_MAM00248c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/13dampp"/>
@@ -7401,10 +7400,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM00249c" sboTerm="SBO:0000247" id="MAM00249c" name="1,4-benzothiazine-O-quinonimine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C12H11N2O5S">
+      <species metaid="M_MAM00249c" sboTerm="SBO:0000247" id="M_MAM00249c" name="1,4-benzothiazine-O-quinonimine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C12H11N2O5S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00249c">
+            <rdf:Description rdf:about="#M_MAM00249c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM32341"/>
@@ -7416,10 +7415,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM00250c" sboTerm="SBO:0000247" id="MAM00250c" name="1,4-dihydroxynaphthalene" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H8O2">
+      <species metaid="M_MAM00250c" sboTerm="SBO:0000247" id="M_MAM00250c" name="1,4-dihydroxynaphthalene" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H8O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00250c">
+            <rdf:Description rdf:about="#M_MAM00250c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:34063"/>
@@ -7432,10 +7431,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00251c" sboTerm="SBO:0000247" id="MAM00251c" name="1,4-naphthoquinone" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H6O2">
+      <species metaid="M_MAM00251c" sboTerm="SBO:0000247" id="M_MAM00251c" name="1,4-naphthoquinone" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H6O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00251c">
+            <rdf:Description rdf:about="#M_MAM00251c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:27418"/>
@@ -7448,10 +7447,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM00252c" sboTerm="SBO:0000247" id="MAM00252c" name="10,11-dihydro-12-epi-LTB4" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H33O4">
+      <species metaid="M_MAM00252c" sboTerm="SBO:0000247" id="M_MAM00252c" name="10,11-dihydro-12-epi-LTB4" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H33O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00252c">
+            <rdf:Description rdf:about="#M_MAM00252c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM162617"/>
@@ -7462,10 +7461,10 @@
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         </annotation>
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-      <species metaid="MAM00252m" sboTerm="SBO:0000247" id="MAM00252m" name="10,11-dihydro-12-epi-LTB4" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H33O4">
+      <species metaid="M_MAM00252m" sboTerm="SBO:0000247" id="M_MAM00252m" name="10,11-dihydro-12-epi-LTB4" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H33O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00252m">
+            <rdf:Description rdf:about="#M_MAM00252m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM162617"/>
@@ -7476,10 +7475,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM00252x" sboTerm="SBO:0000247" id="MAM00252x" name="10,11-dihydro-12-epi-LTB4" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H33O4">
+      <species metaid="M_MAM00252x" sboTerm="SBO:0000247" id="M_MAM00252x" name="10,11-dihydro-12-epi-LTB4" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H33O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00252x">
+            <rdf:Description rdf:about="#M_MAM00252x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM162617"/>
@@ -7490,10 +7489,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00253c" sboTerm="SBO:0000247" id="MAM00253c" name="10,11-dihydro-12-oxo-LTB4" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O4">
+      <species metaid="M_MAM00253c" sboTerm="SBO:0000247" id="M_MAM00253c" name="10,11-dihydro-12-oxo-LTB4" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00253c">
+            <rdf:Description rdf:about="#M_MAM00253c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM33026"/>
@@ -7505,10 +7504,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM00253m" sboTerm="SBO:0000247" id="MAM00253m" name="10,11-dihydro-12-oxo-LTB4" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O4">
+      <species metaid="M_MAM00253m" sboTerm="SBO:0000247" id="M_MAM00253m" name="10,11-dihydro-12-oxo-LTB4" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O4">
         <annotation>
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@@ -7520,10 +7519,10 @@
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@@ -7535,10 +7534,10 @@
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@@ -7549,10 +7548,10 @@
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@@ -7563,10 +7562,10 @@
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+      <species metaid="M_MAM00254x" sboTerm="SBO:0000247" id="M_MAM00254x" name="10,11-dihydro-12R-hydroxy-LTC4" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C30H47N3O10S">
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@@ -7577,10 +7576,10 @@
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+      <species metaid="M_MAM00256c" sboTerm="SBO:0000247" id="M_MAM00256c" name="10,11-dihydro-20-trihydroxy-LTB4" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H33O7">
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@@ -7592,10 +7591,10 @@
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+      <species metaid="M_MAM00256r" sboTerm="SBO:0000247" id="M_MAM00256r" name="10,11-dihydro-20-trihydroxy-LTB4" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H33O7">
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@@ -7607,10 +7606,10 @@
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+      <species metaid="M_MAM00257c" sboTerm="SBO:0000247" id="M_MAM00257c" name="10,11-dihydro-LTB4" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H33O4">
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@@ -7622,10 +7621,10 @@
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+      <species metaid="M_MAM00257m" sboTerm="SBO:0000247" id="M_MAM00257m" name="10,11-dihydro-LTB4" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H33O4">
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@@ -7637,10 +7636,10 @@
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+      <species metaid="M_MAM00257x" sboTerm="SBO:0000247" id="M_MAM00257x" name="10,11-dihydro-LTB4" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H33O4">
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+            <rdf:Description rdf:about="#M_MAM00257x">
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@@ -7652,10 +7651,10 @@
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+      <species metaid="M_MAM00257r" sboTerm="SBO:0000247" id="M_MAM00257r" name="10,11-dihydro-LTB4" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H33O4">
         <annotation>
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+            <rdf:Description rdf:about="#M_MAM00257r">
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@@ -7667,10 +7666,10 @@
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+      <species metaid="M_MAM00258c" sboTerm="SBO:0000247" id="M_MAM00258c" name="10,11-dihydro-LTB4-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H64N7O19P3S">
         <annotation>
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+            <rdf:Description rdf:about="#M_MAM00258c">
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@@ -7681,10 +7680,10 @@
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+      <species metaid="M_MAM00258m" sboTerm="SBO:0000247" id="M_MAM00258m" name="10,11-dihydro-LTB4-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H64N7O19P3S">
         <annotation>
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@@ -7695,10 +7694,10 @@
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+      <species metaid="M_MAM00258x" sboTerm="SBO:0000247" id="M_MAM00258x" name="10,11-dihydro-LTB4-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H64N7O19P3S">
         <annotation>
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+            <rdf:Description rdf:about="#M_MAM00258x">
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@@ -7709,10 +7708,10 @@
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+      <species metaid="M_MAM00258r" sboTerm="SBO:0000247" id="M_MAM00258r" name="10,11-dihydro-LTB4-CoA" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H64N7O19P3S">
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+            <rdf:Description rdf:about="#M_MAM00258r">
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@@ -7723,10 +7722,10 @@
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+      <species metaid="M_MAM00259c" sboTerm="SBO:0000247" id="M_MAM00259c" name="10,11-epoxy-(4Z,7Z)-hexadecadienoic acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C16H25O3">
         <annotation>
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+            <rdf:Description rdf:about="#M_MAM00259c">
               <bqbiol:is>
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@@ -7736,10 +7735,10 @@
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+      <species metaid="M_MAM00260c" sboTerm="SBO:0000247" id="M_MAM00260c" name="10,13,16,19-docosatetraenoic acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C22H35O2">
         <annotation>
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+            <rdf:Description rdf:about="#M_MAM00260c">
               <bqbiol:is>
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@@ -7749,10 +7748,10 @@
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+      <species metaid="M_MAM00260l" sboTerm="SBO:0000247" id="M_MAM00260l" name="10,13,16,19-docosatetraenoic acid" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C22H35O2">
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@@ -7762,10 +7761,10 @@
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+      <species metaid="M_MAM00260r" sboTerm="SBO:0000247" id="M_MAM00260r" name="10,13,16,19-docosatetraenoic acid" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C22H35O2">
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@@ -7775,10 +7774,10 @@
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+      <species metaid="M_MAM00260e" sboTerm="SBO:0000247" id="M_MAM00260e" name="10,13,16,19-docosatetraenoic acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C22H35O2">
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@@ -7788,10 +7787,10 @@
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+      <species metaid="M_MAM00261c" sboTerm="SBO:0000247" id="M_MAM00261c" name="10,13,16,19-docosatetraenoylcarnitine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C29H49NO4">
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@@ -7801,10 +7800,10 @@
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+      <species metaid="M_MAM00261m" sboTerm="SBO:0000247" id="M_MAM00261m" name="10,13,16,19-docosatetraenoylcarnitine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C29H49NO4">
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@@ -7814,10 +7813,10 @@
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+      <species metaid="M_MAM00261r" sboTerm="SBO:0000247" id="M_MAM00261r" name="10,13,16,19-docosatetraenoylcarnitine" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C29H49NO4">
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@@ -7827,10 +7826,10 @@
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+      <species metaid="M_MAM00262c" sboTerm="SBO:0000247" id="M_MAM00262c" name="10,13,16,19-docosatetraenoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C43H66N7O17P3S">
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@@ -7842,10 +7841,10 @@
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@@ -7857,10 +7856,10 @@
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@@ -7872,10 +7871,10 @@
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+      <species metaid="M_MAM00263c" sboTerm="SBO:0000247" id="M_MAM00263c" name="10,13,16-docosatrienoylcarnitine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C29H51NO4">
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@@ -7885,10 +7884,10 @@
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+      <species metaid="M_MAM00263m" sboTerm="SBO:0000247" id="M_MAM00263m" name="10,13,16-docosatrienoylcarnitine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C29H51NO4">
         <annotation>
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@@ -7898,10 +7897,10 @@
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+      <species metaid="M_MAM00263r" sboTerm="SBO:0000247" id="M_MAM00263r" name="10,13,16-docosatrienoylcarnitine" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C29H51NO4">
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@@ -7911,10 +7910,10 @@
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+      <species metaid="M_MAM00264c" sboTerm="SBO:0000247" id="M_MAM00264c" name="10,13,16-docosatrienoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C43H68N7O17P3S">
         <annotation>
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@@ -7926,10 +7925,10 @@
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+      <species metaid="M_MAM00264m" sboTerm="SBO:0000247" id="M_MAM00264m" name="10,13,16-docosatrienoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C43H68N7O17P3S">
         <annotation>
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@@ -7941,10 +7940,10 @@
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+      <species metaid="M_MAM00264r" sboTerm="SBO:0000247" id="M_MAM00264r" name="10,13,16-docosatrienoyl-CoA" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C43H68N7O17P3S">
         <annotation>
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@@ -7956,10 +7955,10 @@
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+      <species metaid="M_MAM00265c" sboTerm="SBO:0000247" id="M_MAM00265c" name="10,13,16-docosatriynoic acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C22H37O2">
         <annotation>
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+            <rdf:Description rdf:about="#M_MAM00265c">
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@@ -7971,10 +7970,10 @@
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+            <rdf:Description rdf:about="#M_MAM00265l">
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@@ -7986,10 +7985,10 @@
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+      <species metaid="M_MAM00265r" sboTerm="SBO:0000247" id="M_MAM00265r" name="10,13,16-docosatriynoic acid" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C22H37O2">
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+            <rdf:Description rdf:about="#M_MAM00265r">
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@@ -8001,10 +8000,10 @@
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+      <species metaid="M_MAM00265e" sboTerm="SBO:0000247" id="M_MAM00265e" name="10,13,16-docosatriynoic acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C22H37O2">
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+            <rdf:Description rdf:about="#M_MAM00265e">
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@@ -8016,10 +8015,10 @@
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+      <species metaid="M_MAM00266c" sboTerm="SBO:0000247" id="M_MAM00266c" name="10-formyl-THF" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C20H21N7O7">
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-            <rdf:Description rdf:about="#MAM00266c">
+            <rdf:Description rdf:about="#M_MAM00266c">
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@@ -8034,10 +8033,10 @@
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+      <species metaid="M_MAM00266l" sboTerm="SBO:0000247" id="M_MAM00266l" name="10-formyl-THF" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C20H21N7O7">
         <annotation>
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-            <rdf:Description rdf:about="#MAM00266l">
+            <rdf:Description rdf:about="#M_MAM00266l">
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@@ -8052,10 +8051,10 @@
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+      <species metaid="M_MAM00266m" sboTerm="SBO:0000247" id="M_MAM00266m" name="10-formyl-THF" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C20H21N7O7">
         <annotation>
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-            <rdf:Description rdf:about="#MAM00266m">
+            <rdf:Description rdf:about="#M_MAM00266m">
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@@ -8070,10 +8069,10 @@
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+      <species metaid="M_MAM00266e" sboTerm="SBO:0000247" id="M_MAM00266e" name="10-formyl-THF" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C20H21N7O7">
         <annotation>
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-            <rdf:Description rdf:about="#MAM00266e">
+            <rdf:Description rdf:about="#M_MAM00266e">
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@@ -8088,10 +8087,10 @@
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-      <species metaid="MAM00267c" sboTerm="SBO:0000247" id="MAM00267c" name="10-formyl-THF-glu(5)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-6" fbc:chemicalFormula="C40H45N11O19">
+      <species metaid="M_MAM00267c" sboTerm="SBO:0000247" id="M_MAM00267c" name="10-formyl-THF-glu(5)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-6" fbc:chemicalFormula="C40H45N11O19">
         <annotation>
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-            <rdf:Description rdf:about="#MAM00267c">
+            <rdf:Description rdf:about="#M_MAM00267c">
               <bqbiol:is>
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@@ -8103,10 +8102,10 @@
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+      <species metaid="M_MAM00267l" sboTerm="SBO:0000247" id="M_MAM00267l" name="10-formyl-THF-glu(5)" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-6" fbc:chemicalFormula="C40H45N11O19">
         <annotation>
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-            <rdf:Description rdf:about="#MAM00267l">
+            <rdf:Description rdf:about="#M_MAM00267l">
               <bqbiol:is>
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@@ -8118,10 +8117,10 @@
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+      <species metaid="M_MAM00267m" sboTerm="SBO:0000247" id="M_MAM00267m" name="10-formyl-THF-glu(5)" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-6" fbc:chemicalFormula="C40H45N11O19">
         <annotation>
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-            <rdf:Description rdf:about="#MAM00267m">
+            <rdf:Description rdf:about="#M_MAM00267m">
               <bqbiol:is>
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                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/10fthf5glu"/>
@@ -8133,10 +8132,10 @@
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-      <species metaid="MAM00267e" sboTerm="SBO:0000247" id="MAM00267e" name="10-formyl-THF-glu(5)" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-6" fbc:chemicalFormula="C40H45N11O19">
+      <species metaid="M_MAM00267e" sboTerm="SBO:0000247" id="M_MAM00267e" name="10-formyl-THF-glu(5)" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-6" fbc:chemicalFormula="C40H45N11O19">
         <annotation>
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-            <rdf:Description rdf:about="#MAM00267e">
+            <rdf:Description rdf:about="#M_MAM00267e">
               <bqbiol:is>
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                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/10fthf5glu"/>
@@ -8148,10 +8147,10 @@
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-      <species metaid="MAM00268c" sboTerm="SBO:0000247" id="MAM00268c" name="10-formyl-THF-glu(6)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-7" fbc:chemicalFormula="C45H51N12O22">
+      <species metaid="M_MAM00268c" sboTerm="SBO:0000247" id="M_MAM00268c" name="10-formyl-THF-glu(6)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-7" fbc:chemicalFormula="C45H51N12O22">
         <annotation>
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-            <rdf:Description rdf:about="#MAM00268c">
+            <rdf:Description rdf:about="#M_MAM00268c">
               <bqbiol:is>
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                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/10fthf6glu"/>
@@ -8163,10 +8162,10 @@
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-      <species metaid="MAM00268l" sboTerm="SBO:0000247" id="MAM00268l" name="10-formyl-THF-glu(6)" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-7" fbc:chemicalFormula="C45H51N12O22">
+      <species metaid="M_MAM00268l" sboTerm="SBO:0000247" id="M_MAM00268l" name="10-formyl-THF-glu(6)" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-7" fbc:chemicalFormula="C45H51N12O22">
         <annotation>
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-            <rdf:Description rdf:about="#MAM00268l">
+            <rdf:Description rdf:about="#M_MAM00268l">
               <bqbiol:is>
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                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/10fthf6glu"/>
@@ -8178,10 +8177,10 @@
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-      <species metaid="MAM00268m" sboTerm="SBO:0000247" id="MAM00268m" name="10-formyl-THF-glu(6)" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-7" fbc:chemicalFormula="C45H51N12O22">
+      <species metaid="M_MAM00268m" sboTerm="SBO:0000247" id="M_MAM00268m" name="10-formyl-THF-glu(6)" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-7" fbc:chemicalFormula="C45H51N12O22">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00268m">
+            <rdf:Description rdf:about="#M_MAM00268m">
               <bqbiol:is>
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                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/10fthf6glu"/>
@@ -8193,10 +8192,10 @@
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-      <species metaid="MAM00268e" sboTerm="SBO:0000247" id="MAM00268e" name="10-formyl-THF-glu(6)" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-7" fbc:chemicalFormula="C45H51N12O22">
+      <species metaid="M_MAM00268e" sboTerm="SBO:0000247" id="M_MAM00268e" name="10-formyl-THF-glu(6)" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-7" fbc:chemicalFormula="C45H51N12O22">
         <annotation>
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-            <rdf:Description rdf:about="#MAM00268e">
+            <rdf:Description rdf:about="#M_MAM00268e">
               <bqbiol:is>
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                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/10fthf6glu"/>
@@ -8208,10 +8207,10 @@
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-      <species metaid="MAM00269c" sboTerm="SBO:0000247" id="MAM00269c" name="10-formyl-THF-glu(7)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-8" fbc:chemicalFormula="C50H57N13O25">
+      <species metaid="M_MAM00269c" sboTerm="SBO:0000247" id="M_MAM00269c" name="10-formyl-THF-glu(7)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-8" fbc:chemicalFormula="C50H57N13O25">
         <annotation>
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-            <rdf:Description rdf:about="#MAM00269c">
+            <rdf:Description rdf:about="#M_MAM00269c">
               <bqbiol:is>
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                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/10fthf7glu"/>
@@ -8223,10 +8222,10 @@
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-      <species metaid="MAM00269l" sboTerm="SBO:0000247" id="MAM00269l" name="10-formyl-THF-glu(7)" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-8" fbc:chemicalFormula="C50H57N13O25">
+      <species metaid="M_MAM00269l" sboTerm="SBO:0000247" id="M_MAM00269l" name="10-formyl-THF-glu(7)" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-8" fbc:chemicalFormula="C50H57N13O25">
         <annotation>
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-            <rdf:Description rdf:about="#MAM00269l">
+            <rdf:Description rdf:about="#M_MAM00269l">
               <bqbiol:is>
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                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/10fthf7glu"/>
@@ -8238,10 +8237,10 @@
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-      <species metaid="MAM00269m" sboTerm="SBO:0000247" id="MAM00269m" name="10-formyl-THF-glu(7)" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-8" fbc:chemicalFormula="C50H57N13O25">
+      <species metaid="M_MAM00269m" sboTerm="SBO:0000247" id="M_MAM00269m" name="10-formyl-THF-glu(7)" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-8" fbc:chemicalFormula="C50H57N13O25">
         <annotation>
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-            <rdf:Description rdf:about="#MAM00269m">
+            <rdf:Description rdf:about="#M_MAM00269m">
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                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/10fthf7glu"/>
@@ -8253,10 +8252,10 @@
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-      <species metaid="MAM00269e" sboTerm="SBO:0000247" id="MAM00269e" name="10-formyl-THF-glu(7)" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-8" fbc:chemicalFormula="C50H57N13O25">
+      <species metaid="M_MAM00269e" sboTerm="SBO:0000247" id="M_MAM00269e" name="10-formyl-THF-glu(7)" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-8" fbc:chemicalFormula="C50H57N13O25">
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           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00269e">
+            <rdf:Description rdf:about="#M_MAM00269e">
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@@ -8268,10 +8267,10 @@
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+      <species metaid="M_MAM00270c" sboTerm="SBO:0000247" id="M_MAM00270c" name="10-HETE" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00270c">
+            <rdf:Description rdf:about="#M_MAM00270c">
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@@ -8286,10 +8285,10 @@
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+      <species metaid="M_MAM00270r" sboTerm="SBO:0000247" id="M_MAM00270r" name="10-HETE" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00270r">
+            <rdf:Description rdf:about="#M_MAM00270r">
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@@ -8304,10 +8303,10 @@
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-      <species metaid="MAM00271c" sboTerm="SBO:0000247" id="MAM00271c" name="10-hydroperoxy-H4-neuroprostane" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C22H31O6">
+      <species metaid="M_MAM00271c" sboTerm="SBO:0000247" id="M_MAM00271c" name="10-hydroperoxy-H4-neuroprostane" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C22H31O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00271c">
+            <rdf:Description rdf:about="#M_MAM00271c">
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                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM163636"/>
@@ -8318,10 +8317,10 @@
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-      <species metaid="MAM00272c" sboTerm="SBO:0000247" id="MAM00272c" name="10-hydroxy-D4-neuroprostane" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C22H31O5">
+      <species metaid="M_MAM00272c" sboTerm="SBO:0000247" id="M_MAM00272c" name="10-hydroxy-D4-neuroprostane" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C22H31O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00272c">
+            <rdf:Description rdf:about="#M_MAM00272c">
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                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM164048"/>
@@ -8332,10 +8331,10 @@
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-      <species metaid="MAM00273c" sboTerm="SBO:0000247" id="MAM00273c" name="10-hydroxy-E4-neuroprostane" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C22H31O5">
+      <species metaid="M_MAM00273c" sboTerm="SBO:0000247" id="M_MAM00273c" name="10-hydroxy-E4-neuroprostane" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C22H31O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00273c">
+            <rdf:Description rdf:about="#M_MAM00273c">
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                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM164048"/>
@@ -8346,10 +8345,10 @@
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-      <species metaid="MAM00274c" sboTerm="SBO:0000247" id="MAM00274c" name="10-hydroxy-octadec-(12Z)-enoate-9-beta-D-glucuronide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C24H40O10">
+      <species metaid="M_MAM00274c" sboTerm="SBO:0000247" id="M_MAM00274c" name="10-hydroxy-octadec-(12Z)-enoate-9-beta-D-glucuronide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C24H40O10">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00274c">
+            <rdf:Description rdf:about="#M_MAM00274c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM150158"/>
@@ -8360,10 +8359,10 @@
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-      <species metaid="MAM00274r" sboTerm="SBO:0000247" id="MAM00274r" name="10-hydroxy-octadec-(12Z)-enoate-9-beta-D-glucuronide" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C24H40O10">
+      <species metaid="M_MAM00274r" sboTerm="SBO:0000247" id="M_MAM00274r" name="10-hydroxy-octadec-(12Z)-enoate-9-beta-D-glucuronide" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C24H40O10">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00274r">
+            <rdf:Description rdf:about="#M_MAM00274r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM150158"/>
@@ -8374,10 +8373,10 @@
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-      <species metaid="MAM00275c" sboTerm="SBO:0000247" id="MAM00275c" name="10-peroxy-docosahexaenoate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C22H30O4">
+      <species metaid="M_MAM00275c" sboTerm="SBO:0000247" id="M_MAM00275c" name="10-peroxy-docosahexaenoate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C22H30O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00275c">
+            <rdf:Description rdf:about="#M_MAM00275c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM164048"/>
@@ -8388,10 +8387,10 @@
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-      <species metaid="MAM00276c" sboTerm="SBO:0000247" id="MAM00276c" name="11,12,15-THETA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H33O5">
+      <species metaid="M_MAM00276c" sboTerm="SBO:0000247" id="M_MAM00276c" name="11,12,15-THETA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H33O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00276c">
+            <rdf:Description rdf:about="#M_MAM00276c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:34128"/>
@@ -8404,10 +8403,10 @@
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-      <species metaid="MAM00277c" sboTerm="SBO:0000247" id="MAM00277c" name="11,12-DHET" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H33O4">
+      <species metaid="M_MAM00277c" sboTerm="SBO:0000247" id="M_MAM00277c" name="11,12-DHET" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H33O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00277c">
+            <rdf:Description rdf:about="#M_MAM00277c">
               <bqbiol:is>
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                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:84031"/>
@@ -8420,10 +8419,10 @@
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-      <species metaid="MAM00278c" sboTerm="SBO:0000247" id="MAM00278c" name="11,12-dihydroxy-(5E,7E,9E,14Z)-eicosatetraenoate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O4">
+      <species metaid="M_MAM00278c" sboTerm="SBO:0000247" id="M_MAM00278c" name="11,12-dihydroxy-(5E,7E,9E,14Z)-eicosatetraenoate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00278c">
+            <rdf:Description rdf:about="#M_MAM00278c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/CE2449"/>
@@ -8433,10 +8432,10 @@
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-      <species metaid="MAM00279c" sboTerm="SBO:0000247" id="MAM00279c" name="11,12-EET" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O3">
+      <species metaid="M_MAM00279c" sboTerm="SBO:0000247" id="M_MAM00279c" name="11,12-EET" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00279c">
+            <rdf:Description rdf:about="#M_MAM00279c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/hmdb/HMDB04673"/>
@@ -8451,10 +8450,10 @@
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-      <species metaid="MAM00280c" sboTerm="SBO:0000247" id="MAM00280c" name="11,14,15-THETA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H33O5">
+      <species metaid="M_MAM00280c" sboTerm="SBO:0000247" id="M_MAM00280c" name="11,14,15-THETA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H33O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00280c">
+            <rdf:Description rdf:about="#M_MAM00280c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:137327"/>
@@ -8467,10 +8466,10 @@
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-      <species metaid="MAM00281c" sboTerm="SBO:0000247" id="MAM00281c" name="11,15-cyclo-12,14-cycloperoxy-8-hydroperoxy-(5Z,9E)-eicosadienoate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O6">
+      <species metaid="M_MAM00281c" sboTerm="SBO:0000247" id="M_MAM00281c" name="11,15-cyclo-12,14-cycloperoxy-8-hydroperoxy-(5Z,9E)-eicosadienoate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00281c">
+            <rdf:Description rdf:about="#M_MAM00281c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM162897"/>
@@ -8481,10 +8480,10 @@
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         </annotation>
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-      <species metaid="MAM00282c" sboTerm="SBO:0000247" id="MAM00282c" name="11,15-cyclo-8,12,14-trihydroxy-(5Z,9E)-eicosadienoic acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H33O5">
+      <species metaid="M_MAM00282c" sboTerm="SBO:0000247" id="M_MAM00282c" name="11,15-cyclo-8,12,14-trihydroxy-(5Z,9E)-eicosadienoic acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H33O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00282c">
+            <rdf:Description rdf:about="#M_MAM00282c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/CE5929"/>
@@ -8494,10 +8493,10 @@
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-      <species metaid="MAM00283c" sboTerm="SBO:0000247" id="MAM00283c" name="11beta,17alpha,21-trihydroxypregnenolone" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H32O5">
+      <species metaid="M_MAM00283c" sboTerm="SBO:0000247" id="M_MAM00283c" name="11beta,17alpha,21-trihydroxypregnenolone" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H32O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00283c">
+            <rdf:Description rdf:about="#M_MAM00283c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:27783"/>
@@ -8511,10 +8510,10 @@
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         </annotation>
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-      <species metaid="MAM00284c" sboTerm="SBO:0000247" id="MAM00284c" name="11beta-hydroxyandrost-4-ene-3,17-dione" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H26O3">
+      <species metaid="M_MAM00284c" sboTerm="SBO:0000247" id="M_MAM00284c" name="11beta-hydroxyandrost-4-ene-3,17-dione" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H26O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00284c">
+            <rdf:Description rdf:about="#M_MAM00284c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:27967"/>
@@ -8530,10 +8529,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM00284m" sboTerm="SBO:0000247" id="MAM00284m" name="11beta-hydroxyandrost-4-ene-3,17-dione" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H26O3">
+      <species metaid="M_MAM00284m" sboTerm="SBO:0000247" id="M_MAM00284m" name="11beta-hydroxyandrost-4-ene-3,17-dione" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H26O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00284m">
+            <rdf:Description rdf:about="#M_MAM00284m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:27967"/>
@@ -8549,10 +8548,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM00284r" sboTerm="SBO:0000247" id="MAM00284r" name="11beta-hydroxyandrost-4-ene-3,17-dione" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H26O3">
+      <species metaid="M_MAM00284r" sboTerm="SBO:0000247" id="M_MAM00284r" name="11beta-hydroxyandrost-4-ene-3,17-dione" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H26O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00284r">
+            <rdf:Description rdf:about="#M_MAM00284r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:27967"/>
@@ -8568,10 +8567,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM00286m" sboTerm="SBO:0000247" id="MAM00286m" name="11-carboxy-alpha-chromanol" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C26H41O4">
+      <species metaid="M_MAM00286m" sboTerm="SBO:0000247" id="M_MAM00286m" name="11-carboxy-alpha-chromanol" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C26H41O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00286m">
+            <rdf:Description rdf:about="#M_MAM00286m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM33074"/>
@@ -8582,10 +8581,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM00287m" sboTerm="SBO:0000247" id="MAM00287m" name="11-carboxy-alpha-tocotrienol" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C26H37O4">
+      <species metaid="M_MAM00287m" sboTerm="SBO:0000247" id="M_MAM00287m" name="11-carboxy-alpha-tocotrienol" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C26H37O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00287m">
+            <rdf:Description rdf:about="#M_MAM00287m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM33075"/>
@@ -8596,10 +8595,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00288m" sboTerm="SBO:0000247" id="MAM00288m" name="11-carboxy-gamma-chromanol" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C25H39O4">
+      <species metaid="M_MAM00288m" sboTerm="SBO:0000247" id="M_MAM00288m" name="11-carboxy-gamma-chromanol" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C25H39O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00288m">
+            <rdf:Description rdf:about="#M_MAM00288m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM33076"/>
@@ -8610,10 +8609,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00289m" sboTerm="SBO:0000247" id="MAM00289m" name="11-carboxy-gamma-tocotrienol" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C25H35O4">
+      <species metaid="M_MAM00289m" sboTerm="SBO:0000247" id="M_MAM00289m" name="11-carboxy-gamma-tocotrienol" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C25H35O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00289m">
+            <rdf:Description rdf:about="#M_MAM00289m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM33077"/>
@@ -8624,10 +8623,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00290c" sboTerm="SBO:0000247" id="MAM00290c" name="11-cis-retinal" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H28O">
+      <species metaid="M_MAM00290c" sboTerm="SBO:0000247" id="M_MAM00290c" name="11-cis-retinal" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H28O">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00290c">
+            <rdf:Description rdf:about="#M_MAM00290c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/retinal_11_cis"/>
@@ -8644,10 +8643,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00291c" sboTerm="SBO:0000247" id="MAM00291c" name="11-cis-retinol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H30O">
+      <species metaid="M_MAM00291c" sboTerm="SBO:0000247" id="M_MAM00291c" name="11-cis-retinol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H30O">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00291c">
+            <rdf:Description rdf:about="#M_MAM00291c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/retinol_cis_11"/>
@@ -8664,10 +8663,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00292c" sboTerm="SBO:0000247" id="MAM00292c" name="11-cis-retinyl-palmitate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C36H60O2">
+      <species metaid="M_MAM00292c" sboTerm="SBO:0000247" id="M_MAM00292c" name="11-cis-retinyl-palmitate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C36H60O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00292c">
+            <rdf:Description rdf:about="#M_MAM00292c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C03455"/>
@@ -8680,10 +8679,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00293c" sboTerm="SBO:0000247" id="MAM00293c" name="11-dehydro-thromboxane B2" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O6">
+      <species metaid="M_MAM00293c" sboTerm="SBO:0000247" id="M_MAM00293c" name="11-dehydro-thromboxane B2" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00293c">
+            <rdf:Description rdf:about="#M_MAM00293c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/LMFA03030004"/>
@@ -8696,10 +8695,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00294c" sboTerm="SBO:0000247" id="MAM00294c" name="11-deoxycorticosterone" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H30O3">
+      <species metaid="M_MAM00294c" sboTerm="SBO:0000247" id="M_MAM00294c" name="11-deoxycorticosterone" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H30O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00294c">
+            <rdf:Description rdf:about="#M_MAM00294c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/11docrtstrn"/>
@@ -8717,10 +8716,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00294m" sboTerm="SBO:0000247" id="MAM00294m" name="11-deoxycorticosterone" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H30O3">
+      <species metaid="M_MAM00294m" sboTerm="SBO:0000247" id="M_MAM00294m" name="11-deoxycorticosterone" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H30O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00294m">
+            <rdf:Description rdf:about="#M_MAM00294m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/11docrtstrn"/>
@@ -8738,10 +8737,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00294r" sboTerm="SBO:0000247" id="MAM00294r" name="11-deoxycorticosterone" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H30O3">
+      <species metaid="M_MAM00294r" sboTerm="SBO:0000247" id="M_MAM00294r" name="11-deoxycorticosterone" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H30O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00294r">
+            <rdf:Description rdf:about="#M_MAM00294r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/11docrtstrn"/>
@@ -8759,10 +8758,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00295c" sboTerm="SBO:0000247" id="MAM00295c" name="11-deoxycortisol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H30O4">
+      <species metaid="M_MAM00295c" sboTerm="SBO:0000247" id="M_MAM00295c" name="11-deoxycortisol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H30O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00295c">
+            <rdf:Description rdf:about="#M_MAM00295c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/11docrtsl"/>
@@ -8781,10 +8780,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00295m" sboTerm="SBO:0000247" id="MAM00295m" name="11-deoxycortisol" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H30O4">
+      <species metaid="M_MAM00295m" sboTerm="SBO:0000247" id="M_MAM00295m" name="11-deoxycortisol" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H30O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00295m">
+            <rdf:Description rdf:about="#M_MAM00295m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/11docrtsl"/>
@@ -8803,10 +8802,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00295r" sboTerm="SBO:0000247" id="MAM00295r" name="11-deoxycortisol" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H30O4">
+      <species metaid="M_MAM00295r" sboTerm="SBO:0000247" id="M_MAM00295r" name="11-deoxycortisol" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H30O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00295r">
+            <rdf:Description rdf:about="#M_MAM00295r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/11docrtsl"/>
@@ -8825,10 +8824,10 @@
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-      <species metaid="MAM00296c" sboTerm="SBO:0000247" id="MAM00296c" name="11h-14,15-EETA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O4">
+      <species metaid="M_MAM00296c" sboTerm="SBO:0000247" id="M_MAM00296c" name="11h-14,15-EETA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00296c">
+            <rdf:Description rdf:about="#M_MAM00296c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/LMFA03080008"/>
@@ -8840,10 +8839,10 @@
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-      <species metaid="MAM00297c" sboTerm="SBO:0000247" id="MAM00297c" name="11-HETE" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O3">
+      <species metaid="M_MAM00297c" sboTerm="SBO:0000247" id="M_MAM00297c" name="11-HETE" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00297c">
+            <rdf:Description rdf:about="#M_MAM00297c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/LMFA03060085"/>
@@ -8856,10 +8855,10 @@
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       </species>
-      <species metaid="MAM00298c" sboTerm="SBO:0000247" id="MAM00298c" name="11-HpODE" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H31O4">
+      <species metaid="M_MAM00298c" sboTerm="SBO:0000247" id="M_MAM00298c" name="11-HpODE" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H31O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00298c">
+            <rdf:Description rdf:about="#M_MAM00298c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM4154"/>
@@ -8871,10 +8870,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM00299c" sboTerm="SBO:0000247" id="MAM00299c" name="11-hydroperoxy-H4-neuroprostane" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C22H31O6">
+      <species metaid="M_MAM00299c" sboTerm="SBO:0000247" id="M_MAM00299c" name="11-hydroperoxy-H4-neuroprostane" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C22H31O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00299c">
+            <rdf:Description rdf:about="#M_MAM00299c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM163637"/>
@@ -8885,10 +8884,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM00300c" sboTerm="SBO:0000247" id="MAM00300c" name="11-hydroxy-D4-neuroprostane" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C22H31O5">
+      <species metaid="M_MAM00300c" sboTerm="SBO:0000247" id="M_MAM00300c" name="11-hydroxy-D4-neuroprostane" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C22H31O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00300c">
+            <rdf:Description rdf:about="#M_MAM00300c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM165515"/>
@@ -8899,10 +8898,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM00301c" sboTerm="SBO:0000247" id="MAM00301c" name="11-hydroxy-E4-neuroprostane" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C22H31O5">
+      <species metaid="M_MAM00301c" sboTerm="SBO:0000247" id="M_MAM00301c" name="11-hydroxy-E4-neuroprostane" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C22H31O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00301c">
+            <rdf:Description rdf:about="#M_MAM00301c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM165516"/>
@@ -8913,10 +8912,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM00302c" sboTerm="SBO:0000247" id="MAM00302c" name="11-peroxy-(5Z,8Z,12E,14Z)-eicosatetraenoate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H30O4">
+      <species metaid="M_MAM00302c" sboTerm="SBO:0000247" id="M_MAM00302c" name="11-peroxy-(5Z,8Z,12E,14Z)-eicosatetraenoate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H30O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00302c">
+            <rdf:Description rdf:about="#M_MAM00302c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM12737"/>
@@ -8927,10 +8926,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM00303c" sboTerm="SBO:0000247" id="MAM00303c" name="11-peroxy-docosahexaenoate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C22H30O4">
+      <species metaid="M_MAM00303c" sboTerm="SBO:0000247" id="M_MAM00303c" name="11-peroxy-docosahexaenoate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C22H30O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00303c">
+            <rdf:Description rdf:about="#M_MAM00303c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM163639"/>
@@ -8941,10 +8940,10 @@
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         </annotation>
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-      <species metaid="MAM00304c" sboTerm="SBO:0000247" id="MAM00304c" name="11-trans-LTE4" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H37NO5S">
+      <species metaid="M_MAM00304c" sboTerm="SBO:0000247" id="M_MAM00304c" name="11-trans-LTE4" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H37NO5S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00304c">
+            <rdf:Description rdf:about="#M_MAM00304c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM468320"/>
@@ -8955,10 +8954,10 @@
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         </annotation>
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-      <species metaid="MAM00305c" sboTerm="SBO:0000247" id="MAM00305c" name="12(13)-EpOME" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H31O3">
+      <species metaid="M_MAM00305c" sboTerm="SBO:0000247" id="M_MAM00305c" name="12(13)-EpOME" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H31O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00305c">
+            <rdf:Description rdf:about="#M_MAM00305c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:38299"/>
@@ -8974,10 +8973,10 @@
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         </annotation>
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-      <species metaid="MAM00305r" sboTerm="SBO:0000247" id="MAM00305r" name="12(13)-EpOME" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H31O3">
+      <species metaid="M_MAM00305r" sboTerm="SBO:0000247" id="M_MAM00305r" name="12(13)-EpOME" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H31O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00305r">
+            <rdf:Description rdf:about="#M_MAM00305r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:38299"/>
@@ -8993,10 +8992,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM00306c" sboTerm="SBO:0000247" id="MAM00306c" name="12(R)-HPETE" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O4">
+      <species metaid="M_MAM00306c" sboTerm="SBO:0000247" id="M_MAM00306c" name="12(R)-HPETE" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00306c">
+            <rdf:Description rdf:about="#M_MAM00306c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/12RHPET"/>
@@ -9009,10 +9008,10 @@
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         </annotation>
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-      <species metaid="MAM00307c" sboTerm="SBO:0000247" id="MAM00307c" name="12(S)-HETE" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O3">
+      <species metaid="M_MAM00307c" sboTerm="SBO:0000247" id="M_MAM00307c" name="12(S)-HETE" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00307c">
+            <rdf:Description rdf:about="#M_MAM00307c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/LMFA03060064"/>
@@ -9026,10 +9025,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM00308c" sboTerm="SBO:0000247" id="MAM00308c" name="12(S)-HHT" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C17H27O3">
+      <species metaid="M_MAM00308c" sboTerm="SBO:0000247" id="M_MAM00308c" name="12(S)-HHT" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C17H27O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00308c">
+            <rdf:Description rdf:about="#M_MAM00308c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM13995"/>
@@ -9041,10 +9040,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM00309c" sboTerm="SBO:0000247" id="MAM00309c" name="12(S)-HPETE" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O4">
+      <species metaid="M_MAM00309c" sboTerm="SBO:0000247" id="M_MAM00309c" name="12(S)-HPETE" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00309c">
+            <rdf:Description rdf:about="#M_MAM00309c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/12HPET"/>
@@ -9062,10 +9061,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00309x" sboTerm="SBO:0000247" id="MAM00309x" name="12(S)-HPETE" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O4">
+      <species metaid="M_MAM00309x" sboTerm="SBO:0000247" id="M_MAM00309x" name="12(S)-HPETE" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00309x">
+            <rdf:Description rdf:about="#M_MAM00309x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/12HPET"/>
@@ -9083,10 +9082,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00309r" sboTerm="SBO:0000247" id="MAM00309r" name="12(S)-HPETE" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O4">
+      <species metaid="M_MAM00309r" sboTerm="SBO:0000247" id="M_MAM00309r" name="12(S)-HPETE" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00309r">
+            <rdf:Description rdf:about="#M_MAM00309r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/12HPET"/>
@@ -9104,10 +9103,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00309e" sboTerm="SBO:0000247" id="MAM00309e" name="12(S)-HPETE" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O4">
+      <species metaid="M_MAM00309e" sboTerm="SBO:0000247" id="M_MAM00309e" name="12(S)-HPETE" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00309e">
+            <rdf:Description rdf:about="#M_MAM00309e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/12HPET"/>
@@ -9125,10 +9124,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00310c" sboTerm="SBO:0000247" id="MAM00310c" name="12,13-epoxy-(6Z,9Z)-octadecadienoic acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H29O3">
+      <species metaid="M_MAM00310c" sboTerm="SBO:0000247" id="M_MAM00310c" name="12,13-epoxy-(6Z,9Z)-octadecadienoic acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H29O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00310c">
+            <rdf:Description rdf:about="#M_MAM00310c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/LMFA02000044"/>
@@ -9141,10 +9140,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00311c" sboTerm="SBO:0000247" id="MAM00311c" name="12,13-epoxy-9-alkoxy-(10E)-octadecenoate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H30O4">
+      <species metaid="M_MAM00311c" sboTerm="SBO:0000247" id="M_MAM00311c" name="12,13-epoxy-9-alkoxy-(10E)-octadecenoate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H30O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00311c">
+            <rdf:Description rdf:about="#M_MAM00311c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM34918"/>
@@ -9155,10 +9154,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00312c" sboTerm="SBO:0000247" id="MAM00312c" name="12,13-epoxy-9-hydroperoxy-(10E)-octadecenoate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H31O5">
+      <species metaid="M_MAM00312c" sboTerm="SBO:0000247" id="M_MAM00312c" name="12,13-epoxy-9-hydroperoxy-(10E)-octadecenoate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H31O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00312c">
+            <rdf:Description rdf:about="#M_MAM00312c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/CE5922"/>
@@ -9168,10 +9167,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00313c" sboTerm="SBO:0000247" id="MAM00313c" name="12,13-epoxylinoleic acid-radical" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H30O3">
+      <species metaid="M_MAM00313c" sboTerm="SBO:0000247" id="M_MAM00313c" name="12,13-epoxylinoleic acid-radical" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H30O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00313c">
+            <rdf:Description rdf:about="#M_MAM00313c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/CE5527"/>
@@ -9181,10 +9180,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00314c" sboTerm="SBO:0000247" id="MAM00314c" name="12,13-hydroxyoctadec-9(z)-enoate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H33O4">
+      <species metaid="M_MAM00314c" sboTerm="SBO:0000247" id="M_MAM00314c" name="12,13-hydroxyoctadec-9(z)-enoate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H33O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00314c">
+            <rdf:Description rdf:about="#M_MAM00314c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/hmdb/HMDB04705"/>
@@ -9198,10 +9197,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00314r" sboTerm="SBO:0000247" id="MAM00314r" name="12,13-hydroxyoctadec-9(z)-enoate" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H33O4">
+      <species metaid="M_MAM00314r" sboTerm="SBO:0000247" id="M_MAM00314r" name="12,13-hydroxyoctadec-9(z)-enoate" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H33O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00314r">
+            <rdf:Description rdf:about="#M_MAM00314r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/hmdb/HMDB04705"/>
@@ -9215,10 +9214,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00315c" sboTerm="SBO:0000247" id="MAM00315c" name="12,15,18,21-tetracosatetraenoic acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H39O2">
+      <species metaid="M_MAM00315c" sboTerm="SBO:0000247" id="M_MAM00315c" name="12,15,18,21-tetracosatetraenoic acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H39O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00315c">
+            <rdf:Description rdf:about="#M_MAM00315c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M00315"/>
@@ -9228,10 +9227,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00315l" sboTerm="SBO:0000247" id="MAM00315l" name="12,15,18,21-tetracosatetraenoic acid" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H39O2">
+      <species metaid="M_MAM00315l" sboTerm="SBO:0000247" id="M_MAM00315l" name="12,15,18,21-tetracosatetraenoic acid" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H39O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00315l">
+            <rdf:Description rdf:about="#M_MAM00315l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M00315"/>
@@ -9241,10 +9240,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00315r" sboTerm="SBO:0000247" id="MAM00315r" name="12,15,18,21-tetracosatetraenoic acid" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H39O2">
+      <species metaid="M_MAM00315r" sboTerm="SBO:0000247" id="M_MAM00315r" name="12,15,18,21-tetracosatetraenoic acid" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H39O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00315r">
+            <rdf:Description rdf:about="#M_MAM00315r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M00315"/>
@@ -9254,10 +9253,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00315e" sboTerm="SBO:0000247" id="MAM00315e" name="12,15,18,21-tetracosatetraenoic acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H39O2">
+      <species metaid="M_MAM00315e" sboTerm="SBO:0000247" id="M_MAM00315e" name="12,15,18,21-tetracosatetraenoic acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H39O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00315e">
+            <rdf:Description rdf:about="#M_MAM00315e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M00315"/>
@@ -9267,10 +9266,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00316c" sboTerm="SBO:0000247" id="MAM00316c" name="12,15,18,21-tetracosatetraenoylcarnitine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C31H53NO4">
+      <species metaid="M_MAM00316c" sboTerm="SBO:0000247" id="M_MAM00316c" name="12,15,18,21-tetracosatetraenoylcarnitine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C31H53NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00316c">
+            <rdf:Description rdf:about="#M_MAM00316c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M00316"/>
@@ -9280,10 +9279,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00316r" sboTerm="SBO:0000247" id="MAM00316r" name="12,15,18,21-tetracosatetraenoylcarnitine" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C31H53NO4">
+      <species metaid="M_MAM00316r" sboTerm="SBO:0000247" id="M_MAM00316r" name="12,15,18,21-tetracosatetraenoylcarnitine" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C31H53NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00316r">
+            <rdf:Description rdf:about="#M_MAM00316r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M00316"/>
@@ -9293,10 +9292,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00317c" sboTerm="SBO:0000247" id="MAM00317c" name="12,15,18,21-tetracosatetraenoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C45H70N7O17P3S">
+      <species metaid="M_MAM00317c" sboTerm="SBO:0000247" id="M_MAM00317c" name="12,15,18,21-tetracosatetraenoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C45H70N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00317c">
+            <rdf:Description rdf:about="#M_MAM00317c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM149272"/>
@@ -9308,10 +9307,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00317x" sboTerm="SBO:0000247" id="MAM00317x" name="12,15,18,21-tetracosatetraenoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C45H70N7O17P3S">
+      <species metaid="M_MAM00317x" sboTerm="SBO:0000247" id="M_MAM00317x" name="12,15,18,21-tetracosatetraenoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C45H70N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00317x">
+            <rdf:Description rdf:about="#M_MAM00317x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM149272"/>
@@ -9323,10 +9322,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00317r" sboTerm="SBO:0000247" id="MAM00317r" name="12,15,18,21-tetracosatetraenoyl-CoA" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C45H70N7O17P3S">
+      <species metaid="M_MAM00317r" sboTerm="SBO:0000247" id="M_MAM00317r" name="12,15,18,21-tetracosatetraenoyl-CoA" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C45H70N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00317r">
+            <rdf:Description rdf:about="#M_MAM00317r">
               <bqbiol:is>
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                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM149272"/>
@@ -9338,10 +9337,10 @@
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+      <species metaid="M_MAM00318c" sboTerm="SBO:0000247" id="M_MAM00318c" name="12,20-diHETE" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O4">
         <annotation>
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-            <rdf:Description rdf:about="#MAM00318c">
+            <rdf:Description rdf:about="#M_MAM00318c">
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@@ -9353,10 +9352,10 @@
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+      <species metaid="M_MAM00318r" sboTerm="SBO:0000247" id="M_MAM00318r" name="12,20-diHETE" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O4">
         <annotation>
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-            <rdf:Description rdf:about="#MAM00318r">
+            <rdf:Description rdf:about="#M_MAM00318r">
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                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM150181"/>
@@ -9368,10 +9367,10 @@
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-      <species metaid="MAM00319c" sboTerm="SBO:0000247" id="MAM00319c" name="12,20-dioxo-LTB4" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H27O5">
+      <species metaid="M_MAM00319c" sboTerm="SBO:0000247" id="M_MAM00319c" name="12,20-dioxo-LTB4" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H27O5">
         <annotation>
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-            <rdf:Description rdf:about="#MAM00319c">
+            <rdf:Description rdf:about="#M_MAM00319c">
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                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM150182"/>
@@ -9382,10 +9381,10 @@
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-      <species metaid="MAM00320c" sboTerm="SBO:0000247" id="MAM00320c" name="12-epi-LTB4" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O4">
+      <species metaid="M_MAM00320c" sboTerm="SBO:0000247" id="M_MAM00320c" name="12-epi-LTB4" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00320c">
+            <rdf:Description rdf:about="#M_MAM00320c">
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@@ -9397,10 +9396,10 @@
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-      <species metaid="MAM00321c" sboTerm="SBO:0000247" id="MAM00321c" name="12-hetre" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H33O3">
+      <species metaid="M_MAM00321c" sboTerm="SBO:0000247" id="M_MAM00321c" name="12-hetre" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H33O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00321c">
+            <rdf:Description rdf:about="#M_MAM00321c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/LMFA03050012"/>
@@ -9413,10 +9412,10 @@
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-      <species metaid="MAM00322c" sboTerm="SBO:0000247" id="MAM00322c" name="12-hydroperoxyeicosatetraenoate-glyceryl-ester" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H38O6">
+      <species metaid="M_MAM00322c" sboTerm="SBO:0000247" id="M_MAM00322c" name="12-hydroperoxyeicosatetraenoate-glyceryl-ester" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H38O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00322c">
+            <rdf:Description rdf:about="#M_MAM00322c">
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                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM164054"/>
@@ -9428,10 +9427,10 @@
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-      <species metaid="MAM00323c" sboTerm="SBO:0000247" id="MAM00323c" name="12-hydroxy-13-O-D-glucuronoside-octadec-(9Z)-enoate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C24H40O10">
+      <species metaid="M_MAM00323c" sboTerm="SBO:0000247" id="M_MAM00323c" name="12-hydroxy-13-O-D-glucuronoside-octadec-(9Z)-enoate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C24H40O10">
         <annotation>
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-            <rdf:Description rdf:about="#MAM00323c">
+            <rdf:Description rdf:about="#M_MAM00323c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM150189"/>
@@ -9442,10 +9441,10 @@
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+      <species metaid="M_MAM00323r" sboTerm="SBO:0000247" id="M_MAM00323r" name="12-hydroxy-13-O-D-glucuronoside-octadec-(9Z)-enoate" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C24H40O10">
         <annotation>
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-            <rdf:Description rdf:about="#MAM00323r">
+            <rdf:Description rdf:about="#M_MAM00323r">
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                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM150189"/>
@@ -9456,10 +9455,10 @@
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-      <species metaid="MAM00324r" sboTerm="SBO:0000247" id="MAM00324r" name="12-hydroxy-arachidonate" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O3">
+      <species metaid="M_MAM00324r" sboTerm="SBO:0000247" id="M_MAM00324r" name="12-hydroxy-arachidonate" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00324r">
+            <rdf:Description rdf:about="#M_MAM00324r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/12harachd"/>
@@ -9473,10 +9472,10 @@
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         </annotation>
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-      <species metaid="MAM00325c" sboTerm="SBO:0000247" id="MAM00325c" name="12-hydroxydodecanoic acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C12H23O3">
+      <species metaid="M_MAM00325c" sboTerm="SBO:0000247" id="M_MAM00325c" name="12-hydroxydodecanoic acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C12H23O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00325c">
+            <rdf:Description rdf:about="#M_MAM00325c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/whddca"/>
@@ -9493,10 +9492,10 @@
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-      <species metaid="MAM00325e" sboTerm="SBO:0000247" id="MAM00325e" name="12-hydroxydodecanoic acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C12H23O3">
+      <species metaid="M_MAM00325e" sboTerm="SBO:0000247" id="M_MAM00325e" name="12-hydroxydodecanoic acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C12H23O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00325e">
+            <rdf:Description rdf:about="#M_MAM00325e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/whddca"/>
@@ -9513,10 +9512,10 @@
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         </annotation>
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-      <species metaid="MAM00326c" sboTerm="SBO:0000247" id="MAM00326c" name="12-keto-LTB4" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H29O4">
+      <species metaid="M_MAM00326c" sboTerm="SBO:0000247" id="M_MAM00326c" name="12-keto-LTB4" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H29O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00326c">
+            <rdf:Description rdf:about="#M_MAM00326c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/LMFA03020024"/>
@@ -9529,10 +9528,10 @@
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-      <species metaid="MAM00326m" sboTerm="SBO:0000247" id="MAM00326m" name="12-keto-LTB4" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H29O4">
+      <species metaid="M_MAM00326m" sboTerm="SBO:0000247" id="M_MAM00326m" name="12-keto-LTB4" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H29O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00326m">
+            <rdf:Description rdf:about="#M_MAM00326m">
               <bqbiol:is>
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                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/LMFA03020024"/>
@@ -9545,10 +9544,10 @@
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         </annotation>
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-      <species metaid="MAM00326x" sboTerm="SBO:0000247" id="MAM00326x" name="12-keto-LTB4" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H29O4">
+      <species metaid="M_MAM00326x" sboTerm="SBO:0000247" id="M_MAM00326x" name="12-keto-LTB4" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H29O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00326x">
+            <rdf:Description rdf:about="#M_MAM00326x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/LMFA03020024"/>
@@ -9561,10 +9560,10 @@
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-      <species metaid="MAM00326r" sboTerm="SBO:0000247" id="MAM00326r" name="12-keto-LTB4" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H29O4">
+      <species metaid="M_MAM00326r" sboTerm="SBO:0000247" id="M_MAM00326r" name="12-keto-LTB4" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H29O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00326r">
+            <rdf:Description rdf:about="#M_MAM00326r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/LMFA03020024"/>
@@ -9577,10 +9576,10 @@
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-      <species metaid="MAM00327c" sboTerm="SBO:0000247" id="MAM00327c" name="12-O-D-glucuronoside-13-hydroxyoctadec-(9Z)-enoate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C24H40O10">
+      <species metaid="M_MAM00327c" sboTerm="SBO:0000247" id="M_MAM00327c" name="12-O-D-glucuronoside-13-hydroxyoctadec-(9Z)-enoate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C24H40O10">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00327c">
+            <rdf:Description rdf:about="#M_MAM00327c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM150196"/>
@@ -9591,10 +9590,10 @@
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-      <species metaid="MAM00327r" sboTerm="SBO:0000247" id="MAM00327r" name="12-O-D-glucuronoside-13-hydroxyoctadec-(9Z)-enoate" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C24H40O10">
+      <species metaid="M_MAM00327r" sboTerm="SBO:0000247" id="M_MAM00327r" name="12-O-D-glucuronoside-13-hydroxyoctadec-(9Z)-enoate" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C24H40O10">
         <annotation>
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-            <rdf:Description rdf:about="#MAM00327r">
+            <rdf:Description rdf:about="#M_MAM00327r">
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                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM150196"/>
@@ -9605,10 +9604,10 @@
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+      <species metaid="M_MAM00328c" sboTerm="SBO:0000247" id="M_MAM00328c" name="12-oxo-10,11-dihydro-20-COOH-LTB4" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C20H28O6">
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+            <rdf:Description rdf:about="#M_MAM00328c">
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@@ -9620,10 +9619,10 @@
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+      <species metaid="M_MAM00328r" sboTerm="SBO:0000247" id="M_MAM00328r" name="12-oxo-10,11-dihydro-20-COOH-LTB4" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C20H28O6">
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+            <rdf:Description rdf:about="#M_MAM00328r">
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@@ -9635,10 +9634,10 @@
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+      <species metaid="M_MAM00329c" sboTerm="SBO:0000247" id="M_MAM00329c" name="12-oxo-20-carboxy-LTB4" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C20H26O6">
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+            <rdf:Description rdf:about="#M_MAM00329c">
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@@ -9650,10 +9649,10 @@
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+      <species metaid="M_MAM00329r" sboTerm="SBO:0000247" id="M_MAM00329r" name="12-oxo-20-carboxy-LTB4" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C20H26O6">
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+            <rdf:Description rdf:about="#M_MAM00329r">
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@@ -9665,10 +9664,10 @@
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+      <species metaid="M_MAM00330c" sboTerm="SBO:0000247" id="M_MAM00330c" name="12-oxo-20-dihydroxy-LTB4" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H29O6">
         <annotation>
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-            <rdf:Description rdf:about="#MAM00330c">
+            <rdf:Description rdf:about="#M_MAM00330c">
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@@ -9680,10 +9679,10 @@
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+      <species metaid="M_MAM00332c" sboTerm="SBO:0000247" id="M_MAM00332c" name="12-oxo-20-trihydroxy-LTB4" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H29O7">
         <annotation>
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-            <rdf:Description rdf:about="#MAM00332c">
+            <rdf:Description rdf:about="#M_MAM00332c">
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                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM33279"/>
@@ -9695,10 +9694,10 @@
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+      <species metaid="M_MAM00332r" sboTerm="SBO:0000247" id="M_MAM00332r" name="12-oxo-20-trihydroxy-LTB4" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H29O7">
         <annotation>
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+            <rdf:Description rdf:about="#M_MAM00332r">
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                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM33279"/>
@@ -9710,10 +9709,10 @@
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+      <species metaid="M_MAM00333c" sboTerm="SBO:0000247" id="M_MAM00333c" name="12-oxo-c-LTB3" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C30H45N3O10S">
         <annotation>
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-            <rdf:Description rdf:about="#MAM00333c">
+            <rdf:Description rdf:about="#M_MAM00333c">
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                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM150197"/>
@@ -9724,10 +9723,10 @@
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+      <species metaid="M_MAM00333m" sboTerm="SBO:0000247" id="M_MAM00333m" name="12-oxo-c-LTB3" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C30H45N3O10S">
         <annotation>
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-            <rdf:Description rdf:about="#MAM00333m">
+            <rdf:Description rdf:about="#M_MAM00333m">
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@@ -9738,10 +9737,10 @@
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+      <species metaid="M_MAM00333x" sboTerm="SBO:0000247" id="M_MAM00333x" name="12-oxo-c-LTB3" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C30H45N3O10S">
         <annotation>
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+            <rdf:Description rdf:about="#M_MAM00333x">
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@@ -9752,10 +9751,10 @@
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+      <species metaid="M_MAM00333r" sboTerm="SBO:0000247" id="M_MAM00333r" name="12-oxo-c-LTB3" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C30H45N3O10S">
         <annotation>
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+            <rdf:Description rdf:about="#M_MAM00333r">
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@@ -9766,10 +9765,10 @@
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+      <species metaid="M_MAM00334c" sboTerm="SBO:0000247" id="M_MAM00334c" name="12-oxoETE" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H29O3">
         <annotation>
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-            <rdf:Description rdf:about="#MAM00334c">
+            <rdf:Description rdf:about="#M_MAM00334c">
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@@ -9781,10 +9780,10 @@
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+      <species metaid="M_MAM00335c" sboTerm="SBO:0000247" id="M_MAM00335c" name="12-peroxy-(5Z,8Z,10E,14Z)-eicosatetraenoate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H30O4">
         <annotation>
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-            <rdf:Description rdf:about="#MAM00335c">
+            <rdf:Description rdf:about="#M_MAM00335c">
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                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/CE5925"/>
@@ -9794,10 +9793,10 @@
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+      <species metaid="M_MAM00336c" sboTerm="SBO:0000247" id="M_MAM00336c" name="13(S)-HODE" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H31O3">
         <annotation>
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-            <rdf:Description rdf:about="#MAM00336c">
+            <rdf:Description rdf:about="#M_MAM00336c">
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@@ -9814,10 +9813,10 @@
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+      <species metaid="M_MAM00337c" sboTerm="SBO:0000247" id="M_MAM00337c" name="13(S)-HPODE" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H31O4">
         <annotation>
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+            <rdf:Description rdf:about="#M_MAM00337c">
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@@ -9834,10 +9833,10 @@
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+      <species metaid="M_MAM00338c" sboTerm="SBO:0000247" id="M_MAM00338c" name="13,14-dihydro-15-keto-PGD2" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O5">
         <annotation>
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+            <rdf:Description rdf:about="#M_MAM00338c">
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@@ -9849,10 +9848,10 @@
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+      <species metaid="M_MAM00339c" sboTerm="SBO:0000247" id="M_MAM00339c" name="13,14-dihydro-15-oxo-lipoxin A4" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O5">
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@@ -9865,10 +9864,10 @@
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+      <species metaid="M_MAM00340c" sboTerm="SBO:0000247" id="M_MAM00340c" name="13,14-dihydro-lipoxin A4" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H33O5">
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@@ -9879,10 +9878,10 @@
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@@ -9900,10 +9899,10 @@
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@@ -9921,10 +9920,10 @@
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+      <species metaid="M_MAM00341r" sboTerm="SBO:0000247" id="M_MAM00341r" name="13,16,19-docosatrienoic acid" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C22H37O2">
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@@ -9942,10 +9941,10 @@
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+      <species metaid="M_MAM00341e" sboTerm="SBO:0000247" id="M_MAM00341e" name="13,16,19-docosatrienoic acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C22H37O2">
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@@ -9963,10 +9962,10 @@
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+      <species metaid="M_MAM00342c" sboTerm="SBO:0000247" id="M_MAM00342c" name="13,16,19-docosatrienoylcarnitine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C29H51NO4">
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@@ -9976,10 +9975,10 @@
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+      <species metaid="M_MAM00342m" sboTerm="SBO:0000247" id="M_MAM00342m" name="13,16,19-docosatrienoylcarnitine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C29H51NO4">
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@@ -9989,10 +9988,10 @@
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+      <species metaid="M_MAM00342r" sboTerm="SBO:0000247" id="M_MAM00342r" name="13,16,19-docosatrienoylcarnitine" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C29H51NO4">
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@@ -10002,10 +10001,10 @@
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@@ -10015,10 +10014,10 @@
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+      <species metaid="M_MAM00343m" sboTerm="SBO:0000247" id="M_MAM00343m" name="13,16,19-docosatrienoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C43H68N7O17P3S">
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@@ -10028,10 +10027,10 @@
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+      <species metaid="M_MAM00343r" sboTerm="SBO:0000247" id="M_MAM00343r" name="13,16,19-docosatrienoyl-CoA" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C43H68N7O17P3S">
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+            <rdf:Description rdf:about="#M_MAM00343r">
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@@ -10041,10 +10040,10 @@
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+      <species metaid="M_MAM00344c" sboTerm="SBO:0000247" id="M_MAM00344c" name="13-carboxy-alpha-tocopherol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C29H47O4">
         <annotation>
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+            <rdf:Description rdf:about="#M_MAM00344c">
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@@ -10056,10 +10055,10 @@
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+      <species metaid="M_MAM00344m" sboTerm="SBO:0000247" id="M_MAM00344m" name="13-carboxy-alpha-tocopherol" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C29H47O4">
         <annotation>
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@@ -10071,10 +10070,10 @@
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+      <species metaid="M_MAM00344r" sboTerm="SBO:0000247" id="M_MAM00344r" name="13-carboxy-alpha-tocopherol" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C29H47O4">
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@@ -10086,10 +10085,10 @@
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+      <species metaid="M_MAM00345c" sboTerm="SBO:0000247" id="M_MAM00345c" name="13-carboxy-alpha-tocotrienol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C29H41O4">
         <annotation>
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@@ -10101,10 +10100,10 @@
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+      <species metaid="M_MAM00345m" sboTerm="SBO:0000247" id="M_MAM00345m" name="13-carboxy-alpha-tocotrienol" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C29H41O4">
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@@ -10116,10 +10115,10 @@
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+      <species metaid="M_MAM00345r" sboTerm="SBO:0000247" id="M_MAM00345r" name="13-carboxy-alpha-tocotrienol" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C29H41O4">
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@@ -10131,10 +10130,10 @@
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+      <species metaid="M_MAM00346c" sboTerm="SBO:0000247" id="M_MAM00346c" name="13-carboxy-gamma-tocopherol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C28H45O4">
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@@ -10146,10 +10145,10 @@
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+      <species metaid="M_MAM00346m" sboTerm="SBO:0000247" id="M_MAM00346m" name="13-carboxy-gamma-tocopherol" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C28H45O4">
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@@ -10161,10 +10160,10 @@
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+      <species metaid="M_MAM00346r" sboTerm="SBO:0000247" id="M_MAM00346r" name="13-carboxy-gamma-tocopherol" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C28H45O4">
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@@ -10176,10 +10175,10 @@
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+      <species metaid="M_MAM00347c" sboTerm="SBO:0000247" id="M_MAM00347c" name="13-carboxy-gamma-tocotrienol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C28H39O4">
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+            <rdf:Description rdf:about="#M_MAM00347c">
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@@ -10191,10 +10190,10 @@
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+      <species metaid="M_MAM00347m" sboTerm="SBO:0000247" id="M_MAM00347m" name="13-carboxy-gamma-tocotrienol" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C28H39O4">
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+            <rdf:Description rdf:about="#M_MAM00347m">
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@@ -10206,10 +10205,10 @@
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+      <species metaid="M_MAM00347r" sboTerm="SBO:0000247" id="M_MAM00347r" name="13-carboxy-gamma-tocotrienol" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C28H39O4">
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+            <rdf:Description rdf:about="#M_MAM00347r">
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@@ -10221,10 +10220,10 @@
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+      <species metaid="M_MAM00348c" sboTerm="SBO:0000247" id="M_MAM00348c" name="13-cis-oxo-retinoate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H27O3">
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+            <rdf:Description rdf:about="#M_MAM00348c">
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@@ -10236,10 +10235,10 @@
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+      <species metaid="M_MAM00349c" sboTerm="SBO:0000247" id="M_MAM00349c" name="13-cis-retinal" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H28O">
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+            <rdf:Description rdf:about="#M_MAM00349c">
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@@ -10256,10 +10255,10 @@
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+      <species metaid="M_MAM00349r" sboTerm="SBO:0000247" id="M_MAM00349r" name="13-cis-retinal" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H28O">
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+            <rdf:Description rdf:about="#M_MAM00349r">
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@@ -10276,10 +10275,10 @@
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+      <species metaid="M_MAM00350c" sboTerm="SBO:0000247" id="M_MAM00350c" name="13-cis-retinoate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H27O2">
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+            <rdf:Description rdf:about="#M_MAM00350c">
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@@ -10297,10 +10296,10 @@
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+      <species metaid="M_MAM00350r" sboTerm="SBO:0000247" id="M_MAM00350r" name="13-cis-retinoate" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H27O2">
         <annotation>
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+            <rdf:Description rdf:about="#M_MAM00350r">
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@@ -10318,10 +10317,10 @@
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+      <species metaid="M_MAM00352r" sboTerm="SBO:0000247" id="M_MAM00352r" name="13-cis-retinoyl-beta-D-glucuronide" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C26H35O8">
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-            <rdf:Description rdf:about="#meta_MAM00352r">
+            <rdf:Description rdf:about="#meta_M_MAM00352r">
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@@ -10329,10 +10328,10 @@
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+      <species metaid="M_MAM00353c" sboTerm="SBO:0000247" id="M_MAM00353c" name="13-cis-retinoyl-glucuronide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C26H35O8">
         <annotation>
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+            <rdf:Description rdf:about="#M_MAM00353c">
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@@ -10346,10 +10345,10 @@
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+      <species metaid="M_MAM00353r" sboTerm="SBO:0000247" id="M_MAM00353r" name="13-cis-retinoyl-glucuronide" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C26H35O8">
         <annotation>
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+            <rdf:Description rdf:about="#M_MAM00353r">
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@@ -10363,10 +10362,10 @@
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+      <species metaid="M_MAM00353e" sboTerm="SBO:0000247" id="M_MAM00353e" name="13-cis-retinoyl-glucuronide" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C26H35O8">
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+            <rdf:Description rdf:about="#M_MAM00353e">
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@@ -10380,10 +10379,10 @@
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+      <species metaid="M_MAM00354c" sboTerm="SBO:0000247" id="M_MAM00354c" name="13-HETE" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O3">
         <annotation>
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+            <rdf:Description rdf:about="#M_MAM00354c">
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@@ -10394,10 +10393,10 @@
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+      <species metaid="M_MAM00355c" sboTerm="SBO:0000247" id="M_MAM00355c" name="13-hydroperoxy-H4-neuroprostane" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C22H31O6">
         <annotation>
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+            <rdf:Description rdf:about="#M_MAM00355c">
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@@ -10408,10 +10407,10 @@
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+      <species metaid="M_MAM00358c" sboTerm="SBO:0000247" id="M_MAM00358c" name="13-hydroxy-D4-neuroprostane" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C22H31O5">
         <annotation>
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-            <rdf:Description rdf:about="#MAM00358c">
+            <rdf:Description rdf:about="#M_MAM00358c">
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@@ -10422,10 +10421,10 @@
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-      <species metaid="MAM00359c" sboTerm="SBO:0000247" id="MAM00359c" name="13-hydroxy-E4-neuroprostane" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C22H31O5">
+      <species metaid="M_MAM00359c" sboTerm="SBO:0000247" id="M_MAM00359c" name="13-hydroxy-E4-neuroprostane" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C22H31O5">
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-            <rdf:Description rdf:about="#MAM00359c">
+            <rdf:Description rdf:about="#M_MAM00359c">
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@@ -10436,10 +10435,10 @@
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-      <species metaid="MAM00362c" sboTerm="SBO:0000247" id="MAM00362c" name="13-oxo-(9Z,11E)-tridecadienoate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C13H19O3">
+      <species metaid="M_MAM00362c" sboTerm="SBO:0000247" id="M_MAM00362c" name="13-oxo-(9Z,11E)-tridecadienoate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C13H19O3">
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-            <rdf:Description rdf:about="#MAM00362c">
+            <rdf:Description rdf:about="#M_MAM00362c">
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@@ -10450,10 +10449,10 @@
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-      <species metaid="MAM00363c" sboTerm="SBO:0000247" id="MAM00363c" name="13-oxy-radical-octadecadienoate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H30O3">
+      <species metaid="M_MAM00363c" sboTerm="SBO:0000247" id="M_MAM00363c" name="13-oxy-radical-octadecadienoate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H30O3">
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-            <rdf:Description rdf:about="#MAM00363c">
+            <rdf:Description rdf:about="#M_MAM00363c">
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                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/CE5526"/>
@@ -10463,10 +10462,10 @@
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+      <species metaid="M_MAM00364c" sboTerm="SBO:0000247" id="M_MAM00364c" name="14,15-DHET" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H33O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00364c">
+            <rdf:Description rdf:about="#M_MAM00364c">
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@@ -10478,10 +10477,10 @@
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-      <species metaid="MAM00365c" sboTerm="SBO:0000247" id="MAM00365c" name="14,15-DiHETE" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O4">
+      <species metaid="M_MAM00365c" sboTerm="SBO:0000247" id="M_MAM00365c" name="14,15-DiHETE" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00365c">
+            <rdf:Description rdf:about="#M_MAM00365c">
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@@ -10494,10 +10493,10 @@
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-      <species metaid="MAM00366c" sboTerm="SBO:0000247" id="MAM00366c" name="14,15-EET" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O3">
+      <species metaid="M_MAM00366c" sboTerm="SBO:0000247" id="M_MAM00366c" name="14,15-EET" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00366c">
+            <rdf:Description rdf:about="#M_MAM00366c">
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@@ -10513,10 +10512,10 @@
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+      <species metaid="M_MAM00366r" sboTerm="SBO:0000247" id="M_MAM00366r" name="14,15-EET" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O3">
         <annotation>
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-            <rdf:Description rdf:about="#MAM00366r">
+            <rdf:Description rdf:about="#M_MAM00366r">
               <bqbiol:is>
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                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:34157"/>
@@ -10532,10 +10531,10 @@
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-      <species metaid="MAM00367c" sboTerm="SBO:0000247" id="MAM00367c" name="14-demethyllanosterol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C29H48O">
+      <species metaid="M_MAM00367c" sboTerm="SBO:0000247" id="M_MAM00367c" name="14-demethyllanosterol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C29H48O">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00367c">
+            <rdf:Description rdf:about="#M_MAM00367c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/44mzym"/>
@@ -10552,10 +10551,10 @@
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-      <species metaid="MAM00368c" sboTerm="SBO:0000247" id="MAM00368c" name="14-hydroperoxy-H4-neuroprostane" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C22H31O6">
+      <species metaid="M_MAM00368c" sboTerm="SBO:0000247" id="M_MAM00368c" name="14-hydroperoxy-H4-neuroprostane" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C22H31O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00368c">
+            <rdf:Description rdf:about="#M_MAM00368c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM12638"/>
@@ -10566,10 +10565,10 @@
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-      <species metaid="MAM00369c" sboTerm="SBO:0000247" id="MAM00369c" name="14-hydroxy-D4-neuroprostane" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C22H31O5">
+      <species metaid="M_MAM00369c" sboTerm="SBO:0000247" id="M_MAM00369c" name="14-hydroxy-D4-neuroprostane" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C22H31O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00369c">
+            <rdf:Description rdf:about="#M_MAM00369c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM165538"/>
@@ -10580,10 +10579,10 @@
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-      <species metaid="MAM00370c" sboTerm="SBO:0000247" id="MAM00370c" name="14-hydroxy-E4-neuroprostane" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C22H31O5">
+      <species metaid="M_MAM00370c" sboTerm="SBO:0000247" id="M_MAM00370c" name="14-hydroxy-E4-neuroprostane" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C22H31O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00370c">
+            <rdf:Description rdf:about="#M_MAM00370c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM33372"/>
@@ -10595,10 +10594,10 @@
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-      <species metaid="MAM00371c" sboTerm="SBO:0000247" id="MAM00371c" name="14-hydroxytetradecanoic acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C14H27O3">
+      <species metaid="M_MAM00371c" sboTerm="SBO:0000247" id="M_MAM00371c" name="14-hydroxytetradecanoic acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C14H27O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00371c">
+            <rdf:Description rdf:about="#M_MAM00371c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/whttdca"/>
@@ -10611,10 +10610,10 @@
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-      <species metaid="MAM00371e" sboTerm="SBO:0000247" id="MAM00371e" name="14-hydroxytetradecanoic acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C14H27O3">
+      <species metaid="M_MAM00371e" sboTerm="SBO:0000247" id="M_MAM00371e" name="14-hydroxytetradecanoic acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C14H27O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00371e">
+            <rdf:Description rdf:about="#M_MAM00371e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/whttdca"/>
@@ -10627,10 +10626,10 @@
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-      <species metaid="MAM00372c" sboTerm="SBO:0000247" id="MAM00372c" name="14-peroxy-docosahexaenoate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C22H30O4">
+      <species metaid="M_MAM00372c" sboTerm="SBO:0000247" id="M_MAM00372c" name="14-peroxy-docosahexaenoate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C22H30O4">
         <annotation>
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-            <rdf:Description rdf:about="#MAM00372c">
+            <rdf:Description rdf:about="#M_MAM00372c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM163646"/>
@@ -10641,10 +10640,10 @@
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-      <species metaid="MAM00373c" sboTerm="SBO:0000247" id="MAM00373c" name="15(R)-HEPE" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H29O3">
+      <species metaid="M_MAM00373c" sboTerm="SBO:0000247" id="M_MAM00373c" name="15(R)-HEPE" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H29O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00373c">
+            <rdf:Description rdf:about="#M_MAM00373c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/LMFA03070037"/>
@@ -10657,10 +10656,10 @@
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-      <species metaid="MAM00373n" sboTerm="SBO:0000247" id="MAM00373n" name="15(R)-HEPE" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H29O3">
+      <species metaid="M_MAM00373n" sboTerm="SBO:0000247" id="M_MAM00373n" name="15(R)-HEPE" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H29O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00373n">
+            <rdf:Description rdf:about="#M_MAM00373n">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/LMFA03070037"/>
@@ -10673,10 +10672,10 @@
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+      <species metaid="M_MAM00373x" sboTerm="SBO:0000247" id="M_MAM00373x" name="15(R)-HEPE" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H29O3">
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+            <rdf:Description rdf:about="#M_MAM00373x">
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@@ -10689,10 +10688,10 @@
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+      <species metaid="M_MAM00373r" sboTerm="SBO:0000247" id="M_MAM00373r" name="15(R)-HEPE" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H29O3">
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+            <rdf:Description rdf:about="#M_MAM00373r">
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@@ -10705,10 +10704,10 @@
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+      <species metaid="M_MAM00375c" sboTerm="SBO:0000247" id="M_MAM00375c" name="15(R)-HpEPE" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H29O4">
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+            <rdf:Description rdf:about="#M_MAM00375c">
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@@ -10719,10 +10718,10 @@
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+      <species metaid="M_MAM00375n" sboTerm="SBO:0000247" id="M_MAM00375n" name="15(R)-HpEPE" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H29O4">
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+            <rdf:Description rdf:about="#M_MAM00375n">
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@@ -10733,10 +10732,10 @@
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+      <species metaid="M_MAM00375x" sboTerm="SBO:0000247" id="M_MAM00375x" name="15(R)-HpEPE" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H29O4">
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-            <rdf:Description rdf:about="#MAM00375x">
+            <rdf:Description rdf:about="#M_MAM00375x">
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@@ -10747,10 +10746,10 @@
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+      <species metaid="M_MAM00375r" sboTerm="SBO:0000247" id="M_MAM00375r" name="15(R)-HpEPE" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H29O4">
         <annotation>
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-            <rdf:Description rdf:about="#MAM00375r">
+            <rdf:Description rdf:about="#M_MAM00375r">
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@@ -10761,10 +10760,10 @@
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+      <species metaid="M_MAM00376c" sboTerm="SBO:0000247" id="M_MAM00376c" name="15(S)-HEPE" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H29O3">
         <annotation>
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+            <rdf:Description rdf:about="#M_MAM00376c">
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@@ -10777,10 +10776,10 @@
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+      <species metaid="M_MAM00377c" sboTerm="SBO:0000247" id="M_MAM00377c" name="15(S)-HETE" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O3">
         <annotation>
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+            <rdf:Description rdf:about="#M_MAM00377c">
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@@ -10792,10 +10791,10 @@
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+      <species metaid="M_MAM00378c" sboTerm="SBO:0000247" id="M_MAM00378c" name="15(S)-HETrE" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H33O3">
         <annotation>
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-            <rdf:Description rdf:about="#MAM00378c">
+            <rdf:Description rdf:about="#M_MAM00378c">
               <bqbiol:is>
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@@ -10809,10 +10808,10 @@
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+      <species metaid="M_MAM00379c" sboTerm="SBO:0000247" id="M_MAM00379c" name="15(S)-HpEPE" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H29O4">
         <annotation>
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-            <rdf:Description rdf:about="#MAM00379c">
+            <rdf:Description rdf:about="#M_MAM00379c">
               <bqbiol:is>
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@@ -10823,10 +10822,10 @@
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-      <species metaid="MAM00380c" sboTerm="SBO:0000247" id="MAM00380c" name="15(S)-HPETE" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O4">
+      <species metaid="M_MAM00380c" sboTerm="SBO:0000247" id="M_MAM00380c" name="15(S)-HPETE" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O4">
         <annotation>
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-            <rdf:Description rdf:about="#MAM00380c">
+            <rdf:Description rdf:about="#M_MAM00380c">
               <bqbiol:is>
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                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/15HPET"/>
@@ -10844,10 +10843,10 @@
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-      <species metaid="MAM00381c" sboTerm="SBO:0000247" id="MAM00381c" name="15-dehydro-prostaglandin D2" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H29O5">
+      <species metaid="M_MAM00381c" sboTerm="SBO:0000247" id="M_MAM00381c" name="15-dehydro-prostaglandin D2" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H29O5">
         <annotation>
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-            <rdf:Description rdf:about="#MAM00381c">
+            <rdf:Description rdf:about="#M_MAM00381c">
               <bqbiol:is>
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                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/LMFA03010206"/>
@@ -10859,10 +10858,10 @@
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-      <species metaid="MAM00382c" sboTerm="SBO:0000247" id="MAM00382c" name="15-deoxy-delta-12,14-PGD2" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H29O4">
+      <species metaid="M_MAM00382c" sboTerm="SBO:0000247" id="M_MAM00382c" name="15-deoxy-delta-12,14-PGD2" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H29O4">
         <annotation>
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-            <rdf:Description rdf:about="#MAM00382c">
+            <rdf:Description rdf:about="#M_MAM00382c">
               <bqbiol:is>
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@@ -10874,10 +10873,10 @@
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+      <species metaid="M_MAM00383c" sboTerm="SBO:0000247" id="M_MAM00383c" name="15-deoxy-delta-12,14-PGJ2" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H27O3">
         <annotation>
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-            <rdf:Description rdf:about="#MAM00383c">
+            <rdf:Description rdf:about="#M_MAM00383c">
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@@ -10889,10 +10888,10 @@
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-      <species metaid="MAM00384c" sboTerm="SBO:0000247" id="MAM00384c" name="15-deoxy-PGD2" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H29O4">
+      <species metaid="M_MAM00384c" sboTerm="SBO:0000247" id="M_MAM00384c" name="15-deoxy-PGD2" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H29O4">
         <annotation>
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-            <rdf:Description rdf:about="#MAM00384c">
+            <rdf:Description rdf:about="#M_MAM00384c">
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@@ -10904,10 +10903,10 @@
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+      <species metaid="M_MAM00385c" sboTerm="SBO:0000247" id="M_MAM00385c" name="15-deoxy-prostaglandin J2" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H27O3">
         <annotation>
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-            <rdf:Description rdf:about="#MAM00385c">
+            <rdf:Description rdf:about="#M_MAM00385c">
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@@ -10919,10 +10918,10 @@
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-      <species metaid="MAM00386c" sboTerm="SBO:0000247" id="MAM00386c" name="15-epi-lipoxin A4" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O5">
+      <species metaid="M_MAM00386c" sboTerm="SBO:0000247" id="M_MAM00386c" name="15-epi-lipoxin A4" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O5">
         <annotation>
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-            <rdf:Description rdf:about="#MAM00386c">
+            <rdf:Description rdf:about="#M_MAM00386c">
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@@ -10934,10 +10933,10 @@
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-      <species metaid="MAM00386x" sboTerm="SBO:0000247" id="MAM00386x" name="15-epi-lipoxin A4" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O5">
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@@ -10949,10 +10948,10 @@
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@@ -10964,10 +10963,10 @@
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@@ -10978,10 +10977,10 @@
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@@ -10992,10 +10991,10 @@
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@@ -11006,10 +11005,10 @@
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@@ -11020,10 +11019,10 @@
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@@ -11034,10 +11033,10 @@
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@@ -11048,10 +11047,10 @@
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@@ -11063,10 +11062,10 @@
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@@ -11078,10 +11077,10 @@
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@@ -11093,10 +11092,10 @@
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@@ -11108,10 +11107,10 @@
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+      <species metaid="M_MAM00391c" sboTerm="SBO:0000247" id="M_MAM00391c" name="15-HpETrE" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H33O4">
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@@ -11123,10 +11122,10 @@
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+      <species metaid="M_MAM00392c" sboTerm="SBO:0000247" id="M_MAM00392c" name="15-keto-prostaglandin F2alpha" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O5">
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@@ -11138,10 +11137,10 @@
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+      <species metaid="M_MAM00393c" sboTerm="SBO:0000247" id="M_MAM00393c" name="15-oxoETE" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H29O3">
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@@ -11153,10 +11152,10 @@
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+      <species metaid="M_MAM00394c" sboTerm="SBO:0000247" id="M_MAM00394c" name="15-oxo-lipoxin A4" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H29O5">
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@@ -11169,10 +11168,10 @@
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+      <species metaid="M_MAM00395c" sboTerm="SBO:0000247" id="M_MAM00395c" name="15-oxo-prostaglandin E2-glyceryl ester" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H36O7">
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@@ -11182,10 +11181,10 @@
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+            <rdf:Description rdf:about="#M_MAM00396c">
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                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/LMFA03060069"/>
@@ -11197,10 +11196,10 @@
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-      <species metaid="MAM00397x" sboTerm="SBO:0000247" id="MAM00397x" name="16(S)-hydroxy-18-oxo-18-CoA-LTE4" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C42H62N8O23P3S2">
+      <species metaid="M_MAM00397x" sboTerm="SBO:0000247" id="M_MAM00397x" name="16(S)-hydroxy-18-oxo-18-CoA-LTE4" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C42H62N8O23P3S2">
         <annotation>
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-            <rdf:Description rdf:about="#MAM00397x">
+            <rdf:Description rdf:about="#M_MAM00397x">
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                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM33496"/>
@@ -11212,10 +11211,10 @@
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-      <species metaid="MAM00398x" sboTerm="SBO:0000247" id="MAM00398x" name="16,18-oxo-18-CoA-dinor-LTE4" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C42H60N8O23P3S2">
+      <species metaid="M_MAM00398x" sboTerm="SBO:0000247" id="M_MAM00398x" name="16,18-oxo-18-CoA-dinor-LTE4" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C42H60N8O23P3S2">
         <annotation>
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-            <rdf:Description rdf:about="#MAM00398x">
+            <rdf:Description rdf:about="#M_MAM00398x">
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                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM33508"/>
@@ -11227,10 +11226,10 @@
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-      <species metaid="MAM00399r" sboTerm="SBO:0000247" id="MAM00399r" name="16alpha-hydroxydehydroepiandrosterone" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H28O3">
+      <species metaid="M_MAM00399r" sboTerm="SBO:0000247" id="M_MAM00399r" name="16alpha-hydroxydehydroepiandrosterone" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H28O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00399r">
+            <rdf:Description rdf:about="#M_MAM00399r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/eandrstrn"/>
@@ -11247,10 +11246,10 @@
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-      <species metaid="MAM00400c" sboTerm="SBO:0000247" id="MAM00400c" name="16alpha-hydroxyestrone" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H22O3">
+      <species metaid="M_MAM00400c" sboTerm="SBO:0000247" id="M_MAM00400c" name="16alpha-hydroxyestrone" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H22O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00400c">
+            <rdf:Description rdf:about="#M_MAM00400c">
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                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:776"/>
@@ -11267,10 +11266,10 @@
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+      <species metaid="M_MAM00400r" sboTerm="SBO:0000247" id="M_MAM00400r" name="16alpha-hydroxyestrone" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H22O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00400r">
+            <rdf:Description rdf:about="#M_MAM00400r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:776"/>
@@ -11287,10 +11286,10 @@
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-      <species metaid="MAM00401x" sboTerm="SBO:0000247" id="MAM00401x" name="16e-18-oxo-18-CoA-dinor-LTE4" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C42H60N8O22P3S2">
+      <species metaid="M_MAM00401x" sboTerm="SBO:0000247" id="M_MAM00401x" name="16e-18-oxo-18-CoA-dinor-LTE4" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C42H60N8O22P3S2">
         <annotation>
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-            <rdf:Description rdf:about="#MAM00401x">
+            <rdf:Description rdf:about="#M_MAM00401x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM33579"/>
@@ -11302,10 +11301,10 @@
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-      <species metaid="MAM00402c" sboTerm="SBO:0000247" id="MAM00402c" name="16-glucuronide-estriol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C24H32O9">
+      <species metaid="M_MAM00402c" sboTerm="SBO:0000247" id="M_MAM00402c" name="16-glucuronide-estriol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C24H32O9">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00402c">
+            <rdf:Description rdf:about="#M_MAM00402c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/estriolglc"/>
@@ -11320,10 +11319,10 @@
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         </annotation>
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-      <species metaid="MAM00402r" sboTerm="SBO:0000247" id="MAM00402r" name="16-glucuronide-estriol" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C24H32O9">
+      <species metaid="M_MAM00402r" sboTerm="SBO:0000247" id="M_MAM00402r" name="16-glucuronide-estriol" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C24H32O9">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00402r">
+            <rdf:Description rdf:about="#M_MAM00402r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/estriolglc"/>
@@ -11338,10 +11337,10 @@
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-      <species metaid="MAM00402e" sboTerm="SBO:0000247" id="MAM00402e" name="16-glucuronide-estriol" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C24H32O9">
+      <species metaid="M_MAM00402e" sboTerm="SBO:0000247" id="M_MAM00402e" name="16-glucuronide-estriol" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C24H32O9">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00402e">
+            <rdf:Description rdf:about="#M_MAM00402e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/estriolglc"/>
@@ -11356,10 +11355,10 @@
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         </annotation>
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-      <species metaid="MAM00403c" sboTerm="SBO:0000247" id="MAM00403c" name="16-hydroxyhexadecanoic acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C16H31O3">
+      <species metaid="M_MAM00403c" sboTerm="SBO:0000247" id="M_MAM00403c" name="16-hydroxyhexadecanoic acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C16H31O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00403c">
+            <rdf:Description rdf:about="#M_MAM00403c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/whhdca"/>
@@ -11375,10 +11374,10 @@
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         </annotation>
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-      <species metaid="MAM00403e" sboTerm="SBO:0000247" id="MAM00403e" name="16-hydroxyhexadecanoic acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C16H31O3">
+      <species metaid="M_MAM00403e" sboTerm="SBO:0000247" id="M_MAM00403e" name="16-hydroxyhexadecanoic acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C16H31O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00403e">
+            <rdf:Description rdf:about="#M_MAM00403e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/whhdca"/>
@@ -11394,10 +11393,10 @@
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         </annotation>
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-      <species metaid="MAM00404c" sboTerm="SBO:0000247" id="MAM00404c" name="16-peroxy-docosahexaenoate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C22H30O4">
+      <species metaid="M_MAM00404c" sboTerm="SBO:0000247" id="M_MAM00404c" name="16-peroxy-docosahexaenoate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C22H30O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00404c">
+            <rdf:Description rdf:about="#M_MAM00404c">
               <bqbiol:is>
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                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM164063"/>
@@ -11408,10 +11407,10 @@
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-      <species metaid="MAM00406c" sboTerm="SBO:0000247" id="MAM00406c" name="17alpha,21-dihydroxypregnenolone" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H32O4">
+      <species metaid="M_MAM00406c" sboTerm="SBO:0000247" id="M_MAM00406c" name="17alpha,21-dihydroxypregnenolone" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H32O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00406c">
+            <rdf:Description rdf:about="#M_MAM00406c">
               <bqbiol:is>
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                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:27832"/>
@@ -11424,10 +11423,10 @@
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-      <species metaid="MAM00407c" sboTerm="SBO:0000247" id="MAM00407c" name="17alpha-hydroxypregnenolone sulfate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C21H31O6S">
+      <species metaid="M_MAM00407c" sboTerm="SBO:0000247" id="M_MAM00407c" name="17alpha-hydroxypregnenolone sulfate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C21H31O6S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00407c">
+            <rdf:Description rdf:about="#M_MAM00407c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM468425"/>
@@ -11439,10 +11438,10 @@
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-      <species metaid="MAM00408c" sboTerm="SBO:0000247" id="MAM00408c" name="17alpha-hydroxypregnenolone" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H32O3">
+      <species metaid="M_MAM00408c" sboTerm="SBO:0000247" id="M_MAM00408c" name="17alpha-hydroxypregnenolone" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H32O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00408c">
+            <rdf:Description rdf:about="#M_MAM00408c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/17ahprgnlone"/>
@@ -11461,10 +11460,10 @@
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         </annotation>
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-      <species metaid="MAM00408r" sboTerm="SBO:0000247" id="MAM00408r" name="17alpha-hydroxypregnenolone" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H32O3">
+      <species metaid="M_MAM00408r" sboTerm="SBO:0000247" id="M_MAM00408r" name="17alpha-hydroxypregnenolone" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H32O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00408r">
+            <rdf:Description rdf:about="#M_MAM00408r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/17ahprgnlone"/>
@@ -11483,10 +11482,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM00409c" sboTerm="SBO:0000247" id="MAM00409c" name="17alpha-hydroxyprogesterone" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H30O3">
+      <species metaid="M_MAM00409c" sboTerm="SBO:0000247" id="M_MAM00409c" name="17alpha-hydroxyprogesterone" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H30O3">
         <annotation>
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+            <rdf:Description rdf:about="#M_MAM00409c">
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@@ -11505,10 +11504,10 @@
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+      <species metaid="M_MAM00409r" sboTerm="SBO:0000247" id="M_MAM00409r" name="17alpha-hydroxyprogesterone" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H30O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
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+            <rdf:Description rdf:about="#M_MAM00409r">
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@@ -11527,10 +11526,10 @@
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-      <species metaid="MAM00410c" sboTerm="SBO:0000247" id="MAM00410c" name="17beta-estradiol-2,3-quinone" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H22O3">
+      <species metaid="M_MAM00410c" sboTerm="SBO:0000247" id="M_MAM00410c" name="17beta-estradiol-2,3-quinone" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H22O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00410c">
+            <rdf:Description rdf:about="#M_MAM00410c">
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@@ -11541,10 +11540,10 @@
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+      <species metaid="M_MAM00410m" sboTerm="SBO:0000247" id="M_MAM00410m" name="17beta-estradiol-2,3-quinone" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H22O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00410m">
+            <rdf:Description rdf:about="#M_MAM00410m">
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                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM150261"/>
@@ -11555,10 +11554,10 @@
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+      <species metaid="M_MAM00410x" sboTerm="SBO:0000247" id="M_MAM00410x" name="17beta-estradiol-2,3-quinone" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H22O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
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+            <rdf:Description rdf:about="#M_MAM00410x">
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                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM150261"/>
@@ -11569,10 +11568,10 @@
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-      <species metaid="MAM00410r" sboTerm="SBO:0000247" id="MAM00410r" name="17beta-estradiol-2,3-quinone" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H22O3">
+      <species metaid="M_MAM00410r" sboTerm="SBO:0000247" id="M_MAM00410r" name="17beta-estradiol-2,3-quinone" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H22O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00410r">
+            <rdf:Description rdf:about="#M_MAM00410r">
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                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM150261"/>
@@ -11583,10 +11582,10 @@
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-      <species metaid="MAM00411c" sboTerm="SBO:0000247" id="MAM00411c" name="17beta-estradiol-2,3-semiquinone" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H23O3">
+      <species metaid="M_MAM00411c" sboTerm="SBO:0000247" id="M_MAM00411c" name="17beta-estradiol-2,3-semiquinone" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H23O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00411c">
+            <rdf:Description rdf:about="#M_MAM00411c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM165550"/>
@@ -11597,10 +11596,10 @@
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+      <species metaid="M_MAM00411l" sboTerm="SBO:0000247" id="M_MAM00411l" name="17beta-estradiol-2,3-semiquinone" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H23O3">
         <annotation>
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-            <rdf:Description rdf:about="#MAM00411l">
+            <rdf:Description rdf:about="#M_MAM00411l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM165550"/>
@@ -11611,10 +11610,10 @@
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-      <species metaid="MAM00412c" sboTerm="SBO:0000247" id="MAM00412c" name="17beta-estradiol-3,4-quinone" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H22O3">
+      <species metaid="M_MAM00412c" sboTerm="SBO:0000247" id="M_MAM00412c" name="17beta-estradiol-3,4-quinone" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H22O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00412c">
+            <rdf:Description rdf:about="#M_MAM00412c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM150262"/>
@@ -11625,10 +11624,10 @@
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-      <species metaid="MAM00412m" sboTerm="SBO:0000247" id="MAM00412m" name="17beta-estradiol-3,4-quinone" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H22O3">
+      <species metaid="M_MAM00412m" sboTerm="SBO:0000247" id="M_MAM00412m" name="17beta-estradiol-3,4-quinone" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H22O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00412m">
+            <rdf:Description rdf:about="#M_MAM00412m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM150262"/>
@@ -11639,10 +11638,10 @@
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         </annotation>
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-      <species metaid="MAM00412x" sboTerm="SBO:0000247" id="MAM00412x" name="17beta-estradiol-3,4-quinone" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H22O3">
+      <species metaid="M_MAM00412x" sboTerm="SBO:0000247" id="M_MAM00412x" name="17beta-estradiol-3,4-quinone" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H22O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00412x">
+            <rdf:Description rdf:about="#M_MAM00412x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM150262"/>
@@ -11653,10 +11652,10 @@
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-      <species metaid="MAM00412r" sboTerm="SBO:0000247" id="MAM00412r" name="17beta-estradiol-3,4-quinone" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H22O3">
+      <species metaid="M_MAM00412r" sboTerm="SBO:0000247" id="M_MAM00412r" name="17beta-estradiol-3,4-quinone" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H22O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00412r">
+            <rdf:Description rdf:about="#M_MAM00412r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM150262"/>
@@ -11667,10 +11666,10 @@
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         </annotation>
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-      <species metaid="MAM00413c" sboTerm="SBO:0000247" id="MAM00413c" name="17beta-estradiol-3,4-semiquinone" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H22O3">
+      <species metaid="M_MAM00413c" sboTerm="SBO:0000247" id="M_MAM00413c" name="17beta-estradiol-3,4-semiquinone" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H22O3">
         <annotation>
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-            <rdf:Description rdf:about="#MAM00413c">
+            <rdf:Description rdf:about="#M_MAM00413c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM165551"/>
@@ -11681,10 +11680,10 @@
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-      <species metaid="MAM00413l" sboTerm="SBO:0000247" id="MAM00413l" name="17beta-estradiol-3,4-semiquinone" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H22O3">
+      <species metaid="M_MAM00413l" sboTerm="SBO:0000247" id="M_MAM00413l" name="17beta-estradiol-3,4-semiquinone" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H22O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00413l">
+            <rdf:Description rdf:about="#M_MAM00413l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM165551"/>
@@ -11695,10 +11694,10 @@
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-      <species metaid="MAM00414c" sboTerm="SBO:0000247" id="MAM00414c" name="17-HETE" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O3">
+      <species metaid="M_MAM00414c" sboTerm="SBO:0000247" id="M_MAM00414c" name="17-HETE" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O3">
         <annotation>
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-            <rdf:Description rdf:about="#MAM00414c">
+            <rdf:Description rdf:about="#M_MAM00414c">
               <bqbiol:is>
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                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/LMFA03060091"/>
@@ -11710,10 +11709,10 @@
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-      <species metaid="MAM00415c" sboTerm="SBO:0000247" id="MAM00415c" name="17-hydroperoxy-H4-neuroprostane" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C22H31O6">
+      <species metaid="M_MAM00415c" sboTerm="SBO:0000247" id="M_MAM00415c" name="17-hydroperoxy-H4-neuroprostane" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C22H31O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00415c">
+            <rdf:Description rdf:about="#M_MAM00415c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM163648"/>
@@ -11724,10 +11723,10 @@
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+      <species metaid="M_MAM00416c" sboTerm="SBO:0000247" id="M_MAM00416c" name="17-hydroxy-D4-neuroprostane" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C22H31O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00416c">
+            <rdf:Description rdf:about="#M_MAM00416c">
               <bqbiol:is>
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@@ -11738,10 +11737,10 @@
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+      <species metaid="M_MAM00417c" sboTerm="SBO:0000247" id="M_MAM00417c" name="17-hydroxy-E4-neuroprostane" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C22H31O5">
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-            <rdf:Description rdf:about="#MAM00417c">
+            <rdf:Description rdf:about="#M_MAM00417c">
               <bqbiol:is>
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                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM33609"/>
@@ -11753,10 +11752,10 @@
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-      <species metaid="MAM00418c" sboTerm="SBO:0000247" id="MAM00418c" name="17-peroxy-docosahexaenoate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C22H30O4">
+      <species metaid="M_MAM00418c" sboTerm="SBO:0000247" id="M_MAM00418c" name="17-peroxy-docosahexaenoate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C22H30O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00418c">
+            <rdf:Description rdf:about="#M_MAM00418c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM164067"/>
@@ -11767,10 +11766,10 @@
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-      <species metaid="MAM00419x" sboTerm="SBO:0000247" id="MAM00419x" name="18(R)-hydroxy-20-oxo-20-CoA-LTE4" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C44H64N8O23P3S2">
+      <species metaid="M_MAM00419x" sboTerm="SBO:0000247" id="M_MAM00419x" name="18(R)-hydroxy-20-oxo-20-CoA-LTE4" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C44H64N8O23P3S2">
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-            <rdf:Description rdf:about="#MAM00419x">
+            <rdf:Description rdf:about="#M_MAM00419x">
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                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM33739"/>
@@ -11781,10 +11780,10 @@
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-      <species metaid="MAM00420m" sboTerm="SBO:0000247" id="MAM00420m" name="18,20-dioxo-20-CoA-LTB4" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C41H57N7O22P3S">
+      <species metaid="M_MAM00420m" sboTerm="SBO:0000247" id="M_MAM00420m" name="18,20-dioxo-20-CoA-LTB4" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C41H57N7O22P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00420m">
+            <rdf:Description rdf:about="#M_MAM00420m">
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                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM33740"/>
@@ -11796,10 +11795,10 @@
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-      <species metaid="MAM00420x" sboTerm="SBO:0000247" id="MAM00420x" name="18,20-dioxo-20-CoA-LTB4" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C41H57N7O22P3S">
+      <species metaid="M_MAM00420x" sboTerm="SBO:0000247" id="M_MAM00420x" name="18,20-dioxo-20-CoA-LTB4" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C41H57N7O22P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00420x">
+            <rdf:Description rdf:about="#M_MAM00420x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM33740"/>
@@ -11811,10 +11810,10 @@
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-      <species metaid="MAM00421m" sboTerm="SBO:0000247" id="MAM00421m" name="18-CoA-18-oxo-dinor-LTB4" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C39H55N7O21P3S">
+      <species metaid="M_MAM00421m" sboTerm="SBO:0000247" id="M_MAM00421m" name="18-CoA-18-oxo-dinor-LTB4" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C39H55N7O21P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00421m">
+            <rdf:Description rdf:about="#M_MAM00421m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM33750"/>
@@ -11826,10 +11825,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM00421x" sboTerm="SBO:0000247" id="MAM00421x" name="18-CoA-18-oxo-dinor-LTB4" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C39H55N7O21P3S">
+      <species metaid="M_MAM00421x" sboTerm="SBO:0000247" id="M_MAM00421x" name="18-CoA-18-oxo-dinor-LTB4" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C39H55N7O21P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00421x">
+            <rdf:Description rdf:about="#M_MAM00421x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM33750"/>
@@ -11841,10 +11840,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM00422x" sboTerm="SBO:0000247" id="MAM00422x" name="18-COOH-(15E)-dinor-LTE4-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C42H60N8O22P3S2">
+      <species metaid="M_MAM00422x" sboTerm="SBO:0000247" id="M_MAM00422x" name="18-COOH-(15E)-dinor-LTE4-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C42H60N8O22P3S2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00422x">
+            <rdf:Description rdf:about="#M_MAM00422x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM47393"/>
@@ -11855,10 +11854,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM00423x" sboTerm="SBO:0000247" id="MAM00423x" name="18-COOH-(16E)-dinor-LTE5-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C42H58N8O22P3S2">
+      <species metaid="M_MAM00423x" sboTerm="SBO:0000247" id="M_MAM00423x" name="18-COOH-(16E)-dinor-LTE5-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C42H58N8O22P3S2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00423x">
+            <rdf:Description rdf:about="#M_MAM00423x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM164681"/>
@@ -11869,10 +11868,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM00424m" sboTerm="SBO:0000247" id="MAM00424m" name="18-COOH-LTB4" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C18H24O6">
+      <species metaid="M_MAM00424m" sboTerm="SBO:0000247" id="M_MAM00424m" name="18-COOH-LTB4" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C18H24O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00424m">
+            <rdf:Description rdf:about="#M_MAM00424m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM468433"/>
@@ -11883,10 +11882,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM00425x" sboTerm="SBO:0000247" id="MAM00425x" name="18-COOH-LTE4" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C21H29NO7S">
+      <species metaid="M_MAM00425x" sboTerm="SBO:0000247" id="M_MAM00425x" name="18-COOH-LTE4" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C21H29NO7S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00425x">
+            <rdf:Description rdf:about="#M_MAM00425x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM33749"/>
@@ -11898,10 +11897,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM00426c" sboTerm="SBO:0000247" id="MAM00426c" name="18-HETE" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O3">
+      <species metaid="M_MAM00426c" sboTerm="SBO:0000247" id="M_MAM00426c" name="18-HETE" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00426c">
+            <rdf:Description rdf:about="#M_MAM00426c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/LMFA03060092"/>
@@ -11913,10 +11912,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00427c" sboTerm="SBO:0000247" id="MAM00427c" name="18-hydroxy-all-trans-retinoate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H27O3">
+      <species metaid="M_MAM00427c" sboTerm="SBO:0000247" id="M_MAM00427c" name="18-hydroxy-all-trans-retinoate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H27O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00427c">
+            <rdf:Description rdf:about="#M_MAM00427c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C16679"/>
@@ -11929,10 +11928,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM00427r" sboTerm="SBO:0000247" id="MAM00427r" name="18-hydroxy-all-trans-retinoate" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H27O3">
+      <species metaid="M_MAM00427r" sboTerm="SBO:0000247" id="M_MAM00427r" name="18-hydroxy-all-trans-retinoate" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H27O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00427r">
+            <rdf:Description rdf:about="#M_MAM00427r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C16679"/>
@@ -11945,10 +11944,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM00428r" sboTerm="SBO:0000247" id="MAM00428r" name="18-hydroxy-arachidonate" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O3">
+      <species metaid="M_MAM00428r" sboTerm="SBO:0000247" id="M_MAM00428r" name="18-hydroxy-arachidonate" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00428r">
+            <rdf:Description rdf:about="#M_MAM00428r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/18harachd"/>
@@ -11962,10 +11961,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM00430c" sboTerm="SBO:0000247" id="MAM00430c" name="19(S)-HETE" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O3">
+      <species metaid="M_MAM00430c" sboTerm="SBO:0000247" id="M_MAM00430c" name="19(S)-HETE" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00430c">
+            <rdf:Description rdf:about="#M_MAM00430c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/LMFA03060074"/>
@@ -11977,10 +11976,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM00431c" sboTerm="SBO:0000247" id="MAM00431c" name="19-hydroxyandrostenedione" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H26O3">
+      <species metaid="M_MAM00431c" sboTerm="SBO:0000247" id="M_MAM00431c" name="19-hydroxyandrostenedione" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H26O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00431c">
+            <rdf:Description rdf:about="#M_MAM00431c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM90384"/>
@@ -11991,10 +11990,10 @@
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         </annotation>
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-      <species metaid="MAM00432c" sboTerm="SBO:0000247" id="MAM00432c" name="19-hydroxytestosterone" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H28O3">
+      <species metaid="M_MAM00432c" sboTerm="SBO:0000247" id="M_MAM00432c" name="19-hydroxytestosterone" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H28O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00432c">
+            <rdf:Description rdf:about="#M_MAM00432c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/whtststerone"/>
@@ -12007,10 +12006,10 @@
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         </annotation>
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-      <species metaid="MAM00432r" sboTerm="SBO:0000247" id="MAM00432r" name="19-hydroxytestosterone" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H28O3">
+      <species metaid="M_MAM00432r" sboTerm="SBO:0000247" id="M_MAM00432r" name="19-hydroxytestosterone" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H28O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00432r">
+            <rdf:Description rdf:about="#M_MAM00432r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/whtststerone"/>
@@ -12023,10 +12022,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM00432e" sboTerm="SBO:0000247" id="MAM00432e" name="19-hydroxytestosterone" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H28O3">
+      <species metaid="M_MAM00432e" sboTerm="SBO:0000247" id="M_MAM00432e" name="19-hydroxytestosterone" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H28O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00432e">
+            <rdf:Description rdf:about="#M_MAM00432e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/whtststerone"/>
@@ -12039,10 +12038,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00433c" sboTerm="SBO:0000247" id="MAM00433c" name="19-oxoandrostenedione" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H24O3">
+      <species metaid="M_MAM00433c" sboTerm="SBO:0000247" id="M_MAM00433c" name="19-oxoandrostenedione" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H24O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00433c">
+            <rdf:Description rdf:about="#M_MAM00433c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM3163"/>
@@ -12053,10 +12052,10 @@
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         </annotation>
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-      <species metaid="MAM00434c" sboTerm="SBO:0000247" id="MAM00434c" name="19-oxo-testosterone" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H26O3">
+      <species metaid="M_MAM00434c" sboTerm="SBO:0000247" id="M_MAM00434c" name="19-oxo-testosterone" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H26O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00434c">
+            <rdf:Description rdf:about="#M_MAM00434c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM3143"/>
@@ -12067,10 +12066,10 @@
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         </annotation>
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-      <species metaid="MAM00435c" sboTerm="SBO:0000247" id="MAM00435c" name="1a,11b-dihydro-4,9-dimethylbenz[a]anthra[3,4-b]oxirene" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H16O">
+      <species metaid="M_MAM00435c" sboTerm="SBO:0000247" id="M_MAM00435c" name="1a,11b-dihydro-4,9-dimethylbenz[a]anthra[3,4-b]oxirene" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H16O">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00435c">
+            <rdf:Description rdf:about="#M_MAM00435c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C19489"/>
@@ -12082,10 +12081,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00436c" sboTerm="SBO:0000247" id="MAM00436c" name="1-acylglycerol-3P-10,13,16,19-doco" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C25H41O7P">
+      <species metaid="M_MAM00436c" sboTerm="SBO:0000247" id="M_MAM00436c" name="1-acylglycerol-3P-10,13,16,19-doco" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C25H41O7P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00436c">
+            <rdf:Description rdf:about="#M_MAM00436c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M00436"/>
@@ -12095,10 +12094,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00437c" sboTerm="SBO:0000247" id="MAM00437c" name="1-acylglycerol-3P-10,13,16-docosa" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C25H43O7P">
+      <species metaid="M_MAM00437c" sboTerm="SBO:0000247" id="M_MAM00437c" name="1-acylglycerol-3P-10,13,16-docosa" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C25H43O7P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00437c">
+            <rdf:Description rdf:about="#M_MAM00437c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM185634"/>
@@ -12109,10 +12108,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM00438c" sboTerm="SBO:0000247" id="MAM00438c" name="1-acylglycerol-3P-10-heptade" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C20H37O7P">
+      <species metaid="M_MAM00438c" sboTerm="SBO:0000247" id="M_MAM00438c" name="1-acylglycerol-3P-10-heptade" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C20H37O7P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00438c">
+            <rdf:Description rdf:about="#M_MAM00438c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M00438"/>
@@ -12122,10 +12121,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00439c" sboTerm="SBO:0000247" id="MAM00439c" name="1-acylglycerol-3P-11,14,17-eico" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C23H39O7P">
+      <species metaid="M_MAM00439c" sboTerm="SBO:0000247" id="M_MAM00439c" name="1-acylglycerol-3P-11,14,17-eico" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C23H39O7P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00439c">
+            <rdf:Description rdf:about="#M_MAM00439c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M00439"/>
@@ -12135,10 +12134,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00440c" sboTerm="SBO:0000247" id="MAM00440c" name="1-acylglycerol-3P-11,14-eicosa" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C23H41O7P">
+      <species metaid="M_MAM00440c" sboTerm="SBO:0000247" id="M_MAM00440c" name="1-acylglycerol-3P-11,14-eicosa" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C23H41O7P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00440c">
+            <rdf:Description rdf:about="#M_MAM00440c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/LMGP10050027"/>
@@ -12151,10 +12150,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00441c" sboTerm="SBO:0000247" id="MAM00441c" name="1-acylglycerol-3P-11-docose" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C25H47O7P">
+      <species metaid="M_MAM00441c" sboTerm="SBO:0000247" id="M_MAM00441c" name="1-acylglycerol-3P-11-docose" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C25H47O7P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00441c">
+            <rdf:Description rdf:about="#M_MAM00441c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/LMGP10050029"/>
@@ -12167,10 +12166,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00442c" sboTerm="SBO:0000247" id="MAM00442c" name="1-acylglycerol-3P-11-eico" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C23H43O7P">
+      <species metaid="M_MAM00442c" sboTerm="SBO:0000247" id="M_MAM00442c" name="1-acylglycerol-3P-11-eico" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C23H43O7P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00442c">
+            <rdf:Description rdf:about="#M_MAM00442c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/LMGP10050026"/>
@@ -12183,10 +12182,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00443c" sboTerm="SBO:0000247" id="MAM00443c" name="1-acylglycerol-3P-12,15,18,21-tetra" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C27H45O7P">
+      <species metaid="M_MAM00443c" sboTerm="SBO:0000247" id="M_MAM00443c" name="1-acylglycerol-3P-12,15,18,21-tetra" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C27H45O7P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00443c">
+            <rdf:Description rdf:about="#M_MAM00443c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M00443"/>
@@ -12196,10 +12195,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM00444c" sboTerm="SBO:0000247" id="MAM00444c" name="1-acylglycerol-3P-13,16,19-doco" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C25H43O7P">
+      <species metaid="M_MAM00444c" sboTerm="SBO:0000247" id="M_MAM00444c" name="1-acylglycerol-3P-13,16,19-doco" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C25H43O7P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00444c">
+            <rdf:Description rdf:about="#M_MAM00444c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M00444"/>
@@ -12209,10 +12208,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00445c" sboTerm="SBO:0000247" id="MAM00445c" name="1-acylglycerol-3P-13,16-docosa" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C25H45O7P">
+      <species metaid="M_MAM00445c" sboTerm="SBO:0000247" id="M_MAM00445c" name="1-acylglycerol-3P-13,16-docosa" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C25H45O7P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00445c">
+            <rdf:Description rdf:about="#M_MAM00445c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/LMGP10050030"/>
@@ -12225,10 +12224,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00446c" sboTerm="SBO:0000247" id="MAM00446c" name="1-acylglycerol-3P-13-docose" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C25H47O7P">
+      <species metaid="M_MAM00446c" sboTerm="SBO:0000247" id="M_MAM00446c" name="1-acylglycerol-3P-13-docose" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C25H47O7P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00446c">
+            <rdf:Description rdf:about="#M_MAM00446c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M00446"/>
@@ -12238,10 +12237,10 @@
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+      <species metaid="M_MAM00447c" sboTerm="SBO:0000247" id="M_MAM00447c" name="1-acylglycerol-3P-13-eicose" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C23H43O7P">
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-            <rdf:Description rdf:about="#MAM00447c">
+            <rdf:Description rdf:about="#M_MAM00447c">
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@@ -12251,10 +12250,10 @@
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+      <species metaid="M_MAM00448c" sboTerm="SBO:0000247" id="M_MAM00448c" name="1-acylglycerol-3P-13-octade" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C21H39O7P">
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-            <rdf:Description rdf:about="#MAM00448c">
+            <rdf:Description rdf:about="#M_MAM00448c">
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@@ -12264,10 +12263,10 @@
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+      <species metaid="M_MAM00449c" sboTerm="SBO:0000247" id="M_MAM00449c" name="1-acylglycerol-3P-15-tetra" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C27H51O7P">
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-            <rdf:Description rdf:about="#MAM00449c">
+            <rdf:Description rdf:about="#M_MAM00449c">
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@@ -12277,10 +12276,10 @@
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+      <species metaid="M_MAM00450c" sboTerm="SBO:0000247" id="M_MAM00450c" name="1-acylglycerol-3P-4,7,10,13,16,19-doco" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C25H37O7P">
         <annotation>
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-            <rdf:Description rdf:about="#MAM00450c">
+            <rdf:Description rdf:about="#M_MAM00450c">
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@@ -12293,10 +12292,10 @@
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+      <species metaid="M_MAM00451c" sboTerm="SBO:0000247" id="M_MAM00451c" name="1-acylglycerol-3P-4,7,10,13,16-docosa" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C25H39O7P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00451c">
+            <rdf:Description rdf:about="#M_MAM00451c">
               <bqbiol:is>
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                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M00451"/>
@@ -12306,10 +12305,10 @@
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-      <species metaid="MAM00452c" sboTerm="SBO:0000247" id="MAM00452c" name="1-acylglycerol-3P-5,8,11,14,17-eico" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C23H35O7P">
+      <species metaid="M_MAM00452c" sboTerm="SBO:0000247" id="M_MAM00452c" name="1-acylglycerol-3P-5,8,11,14,17-eico" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C23H35O7P">
         <annotation>
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-            <rdf:Description rdf:about="#MAM00452c">
+            <rdf:Description rdf:about="#M_MAM00452c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/LMGP10050033"/>
@@ -12322,10 +12321,10 @@
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+      <species metaid="M_MAM00453c" sboTerm="SBO:0000247" id="M_MAM00453c" name="1-acylglycerol-3P-5,8,11-eico" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C23H39O7P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00453c">
+            <rdf:Description rdf:about="#M_MAM00453c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M00453"/>
@@ -12335,10 +12334,10 @@
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-      <species metaid="MAM00454c" sboTerm="SBO:0000247" id="MAM00454c" name="1-acylglycerol-3P-5-tetrade" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C17H31O7P">
+      <species metaid="M_MAM00454c" sboTerm="SBO:0000247" id="M_MAM00454c" name="1-acylglycerol-3P-5-tetrade" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C17H31O7P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00454c">
+            <rdf:Description rdf:about="#M_MAM00454c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M00454"/>
@@ -12348,10 +12347,10 @@
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-      <species metaid="MAM00455c" sboTerm="SBO:0000247" id="MAM00455c" name="1-acylglycerol-3P-6,9,12,15,18,21-tetra" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C27H41O7P">
+      <species metaid="M_MAM00455c" sboTerm="SBO:0000247" id="M_MAM00455c" name="1-acylglycerol-3P-6,9,12,15,18,21-tetra" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C27H41O7P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00455c">
+            <rdf:Description rdf:about="#M_MAM00455c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M00455"/>
@@ -12361,10 +12360,10 @@
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         </annotation>
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-      <species metaid="MAM00456c" sboTerm="SBO:0000247" id="MAM00456c" name="1-acylglycerol-3P-6,9,12,15,18-tetraco" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C27H43O7P">
+      <species metaid="M_MAM00456c" sboTerm="SBO:0000247" id="M_MAM00456c" name="1-acylglycerol-3P-6,9,12,15,18-tetraco" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C27H43O7P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00456c">
+            <rdf:Description rdf:about="#M_MAM00456c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M00456"/>
@@ -12374,10 +12373,10 @@
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-      <species metaid="MAM00457c" sboTerm="SBO:0000247" id="MAM00457c" name="1-acylglycerol-3P-6,9,12,15-octa" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C21H33O7P">
+      <species metaid="M_MAM00457c" sboTerm="SBO:0000247" id="M_MAM00457c" name="1-acylglycerol-3P-6,9,12,15-octa" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C21H33O7P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00457c">
+            <rdf:Description rdf:about="#M_MAM00457c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/LMGP10050024"/>
@@ -12390,10 +12389,10 @@
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-      <species metaid="MAM00458c" sboTerm="SBO:0000247" id="MAM00458c" name="1-acylglycerol-3P-6,9-octa" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C21H37O7P">
+      <species metaid="M_MAM00458c" sboTerm="SBO:0000247" id="M_MAM00458c" name="1-acylglycerol-3P-6,9-octa" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C21H37O7P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00458c">
+            <rdf:Description rdf:about="#M_MAM00458c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M00458"/>
@@ -12403,10 +12402,10 @@
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-      <species metaid="MAM00459c" sboTerm="SBO:0000247" id="MAM00459c" name="1-acylglycerol-3P-7,10,13,16,19-docosa" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C25H39O7P">
+      <species metaid="M_MAM00459c" sboTerm="SBO:0000247" id="M_MAM00459c" name="1-acylglycerol-3P-7,10,13,16,19-docosa" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C25H39O7P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00459c">
+            <rdf:Description rdf:about="#M_MAM00459c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M00459"/>
@@ -12416,10 +12415,10 @@
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-      <species metaid="MAM00460c" sboTerm="SBO:0000247" id="MAM00460c" name="1-acylglycerol-3P-7,10,13,16-docosa" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C25H41O7P">
+      <species metaid="M_MAM00460c" sboTerm="SBO:0000247" id="M_MAM00460c" name="1-acylglycerol-3P-7,10,13,16-docosa" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C25H41O7P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00460c">
+            <rdf:Description rdf:about="#M_MAM00460c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/LMGP10050020"/>
@@ -12432,10 +12431,10 @@
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-      <species metaid="MAM00461c" sboTerm="SBO:0000247" id="MAM00461c" name="1-acylglycerol-3P-7-hexade" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C19H35O7P">
+      <species metaid="M_MAM00461c" sboTerm="SBO:0000247" id="M_MAM00461c" name="1-acylglycerol-3P-7-hexade" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C19H35O7P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00461c">
+            <rdf:Description rdf:about="#M_MAM00461c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M00461"/>
@@ -12445,10 +12444,10 @@
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-      <species metaid="MAM00462c" sboTerm="SBO:0000247" id="MAM00462c" name="1-acylglycerol-3P-7-octade" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C21H39O7P">
+      <species metaid="M_MAM00462c" sboTerm="SBO:0000247" id="M_MAM00462c" name="1-acylglycerol-3P-7-octade" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C21H39O7P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00462c">
+            <rdf:Description rdf:about="#M_MAM00462c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M00462"/>
@@ -12458,10 +12457,10 @@
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-      <species metaid="MAM00463c" sboTerm="SBO:0000247" id="MAM00463c" name="1-acylglycerol-3P-7-tetrade" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C17H31O7P">
+      <species metaid="M_MAM00463c" sboTerm="SBO:0000247" id="M_MAM00463c" name="1-acylglycerol-3P-7-tetrade" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C17H31O7P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00463c">
+            <rdf:Description rdf:about="#M_MAM00463c">
               <bqbiol:is>
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                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M00463"/>
@@ -12471,10 +12470,10 @@
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-      <species metaid="MAM00464c" sboTerm="SBO:0000247" id="MAM00464c" name="1-acylglycerol-3P-8,11,14,17-eico" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C23H37O7P">
+      <species metaid="M_MAM00464c" sboTerm="SBO:0000247" id="M_MAM00464c" name="1-acylglycerol-3P-8,11,14,17-eico" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C23H37O7P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00464c">
+            <rdf:Description rdf:about="#M_MAM00464c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M00464"/>
@@ -12484,10 +12483,10 @@
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-      <species metaid="MAM00465c" sboTerm="SBO:0000247" id="MAM00465c" name="1-acylglycerol-3P-8,11-eico" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C23H41O7P">
+      <species metaid="M_MAM00465c" sboTerm="SBO:0000247" id="M_MAM00465c" name="1-acylglycerol-3P-8,11-eico" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C23H41O7P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00465c">
+            <rdf:Description rdf:about="#M_MAM00465c">
               <bqbiol:is>
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                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M00465"/>
@@ -12497,10 +12496,10 @@
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-      <species metaid="MAM00466c" sboTerm="SBO:0000247" id="MAM00466c" name="1-acylglycerol-3P-9,12,15,18,21-tetra" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C27H43O7P">
+      <species metaid="M_MAM00466c" sboTerm="SBO:0000247" id="M_MAM00466c" name="1-acylglycerol-3P-9,12,15,18,21-tetra" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C27H43O7P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00466c">
+            <rdf:Description rdf:about="#M_MAM00466c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M00466"/>
@@ -12510,10 +12509,10 @@
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         </annotation>
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-      <species metaid="MAM00467c" sboTerm="SBO:0000247" id="MAM00467c" name="1-acylglycerol-3P-9,12,15,18-tetraco" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C27H45O7P">
+      <species metaid="M_MAM00467c" sboTerm="SBO:0000247" id="M_MAM00467c" name="1-acylglycerol-3P-9,12,15,18-tetraco" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C27H45O7P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00467c">
+            <rdf:Description rdf:about="#M_MAM00467c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M00467"/>
@@ -12523,10 +12522,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM00468c" sboTerm="SBO:0000247" id="MAM00468c" name="1-acylglycerol-3P-9-eicose" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C23H43O7P">
+      <species metaid="M_MAM00468c" sboTerm="SBO:0000247" id="M_MAM00468c" name="1-acylglycerol-3P-9-eicose" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C23H43O7P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00468c">
+            <rdf:Description rdf:about="#M_MAM00468c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M00468"/>
@@ -12536,10 +12535,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00469c" sboTerm="SBO:0000247" id="MAM00469c" name="1-acylglycerol-3P-9-heptade" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C20H37O7P">
+      <species metaid="M_MAM00469c" sboTerm="SBO:0000247" id="M_MAM00469c" name="1-acylglycerol-3P-9-heptade" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C20H37O7P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00469c">
+            <rdf:Description rdf:about="#M_MAM00469c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/LMGP10050002"/>
@@ -12551,10 +12550,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM00470c" sboTerm="SBO:0000247" id="MAM00470c" name="1-acylglycerol-3P-9-octade" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C21H39O7P">
+      <species metaid="M_MAM00470c" sboTerm="SBO:0000247" id="M_MAM00470c" name="1-acylglycerol-3P-9-octade" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C21H39O7P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00470c">
+            <rdf:Description rdf:about="#M_MAM00470c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M00470"/>
@@ -12564,10 +12563,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM00471c" sboTerm="SBO:0000247" id="MAM00471c" name="1-acylglycerol-3P-9-tetrade" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C17H31O7P">
+      <species metaid="M_MAM00471c" sboTerm="SBO:0000247" id="M_MAM00471c" name="1-acylglycerol-3P-9-tetrade" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C17H31O7P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00471c">
+            <rdf:Description rdf:about="#M_MAM00471c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/LMGP10050038"/>
@@ -12580,10 +12579,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00472c" sboTerm="SBO:0000247" id="MAM00472c" name="1-acylglycerol-3P-arach" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C23H37O7P">
+      <species metaid="M_MAM00472c" sboTerm="SBO:0000247" id="M_MAM00472c" name="1-acylglycerol-3P-arach" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C23H37O7P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00472c">
+            <rdf:Description rdf:about="#M_MAM00472c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/LMGP10050013"/>
@@ -12595,10 +12594,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00473c" sboTerm="SBO:0000247" id="MAM00473c" name="1-acylglycerol-3P-bile-PC pool" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C4H6O7PR">
+      <species metaid="M_MAM00473c" sboTerm="SBO:0000247" id="M_MAM00473c" name="1-acylglycerol-3P-bile-PC pool" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C4H6O7PR">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00473c">
+            <rdf:Description rdf:about="#M_MAM00473c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:16975"/>
@@ -12612,10 +12611,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00474c" sboTerm="SBO:0000247" id="MAM00474c" name="1-acylglycerol-3P-cis-vac" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C21H39O7P">
+      <species metaid="M_MAM00474c" sboTerm="SBO:0000247" id="M_MAM00474c" name="1-acylglycerol-3P-cis-vac" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C21H39O7P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00474c">
+            <rdf:Description rdf:about="#M_MAM00474c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M00474"/>
@@ -12625,10 +12624,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00476c" sboTerm="SBO:0000247" id="MAM00476c" name="1-acylglycerol-3P-dihomo-gamma" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C23H39O7P">
+      <species metaid="M_MAM00476c" sboTerm="SBO:0000247" id="M_MAM00476c" name="1-acylglycerol-3P-dihomo-gamma" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C23H39O7P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00476c">
+            <rdf:Description rdf:about="#M_MAM00476c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/LMGP10050028"/>
@@ -12641,10 +12640,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00477c" sboTerm="SBO:0000247" id="MAM00477c" name="1-acylglycerol-3P-docosa" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C25H49O7P">
+      <species metaid="M_MAM00477c" sboTerm="SBO:0000247" id="M_MAM00477c" name="1-acylglycerol-3P-docosa" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C25H49O7P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00477c">
+            <rdf:Description rdf:about="#M_MAM00477c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/LMGP10050031"/>
@@ -12657,10 +12656,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM00478c" sboTerm="SBO:0000247" id="MAM00478c" name="1-acylglycerol-3P-eico" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C23H45O7P">
+      <species metaid="M_MAM00478c" sboTerm="SBO:0000247" id="M_MAM00478c" name="1-acylglycerol-3P-eico" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C23H45O7P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00478c">
+            <rdf:Description rdf:about="#M_MAM00478c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/LMGP10050018"/>
@@ -12673,10 +12672,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM00479c" sboTerm="SBO:0000247" id="MAM00479c" name="1-acylglycerol-3P-gamma-lin" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C21H35O7P">
+      <species metaid="M_MAM00479c" sboTerm="SBO:0000247" id="M_MAM00479c" name="1-acylglycerol-3P-gamma-lin" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C21H35O7P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00479c">
+            <rdf:Description rdf:about="#M_MAM00479c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/LMGP10050023"/>
@@ -12689,10 +12688,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00480c" sboTerm="SBO:0000247" id="MAM00480c" name="1-acylglycerol-3P-heneico" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C24H47O7P">
+      <species metaid="M_MAM00480c" sboTerm="SBO:0000247" id="M_MAM00480c" name="1-acylglycerol-3P-heneico" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C24H47O7P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00480c">
+            <rdf:Description rdf:about="#M_MAM00480c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/LMGP10050032"/>
@@ -12705,10 +12704,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM00481c" sboTerm="SBO:0000247" id="MAM00481c" name="1-acylglycerol-3P-heptade" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C20H39O7P">
+      <species metaid="M_MAM00481c" sboTerm="SBO:0000247" id="M_MAM00481c" name="1-acylglycerol-3P-heptade" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C20H39O7P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00481c">
+            <rdf:Description rdf:about="#M_MAM00481c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/LMGP10050036"/>
@@ -12721,10 +12720,10 @@
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         </annotation>
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-      <species metaid="MAM00482c" sboTerm="SBO:0000247" id="MAM00482c" name="1-acylglycerol-3P-hexacosa" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C29H57O7P">
+      <species metaid="M_MAM00482c" sboTerm="SBO:0000247" id="M_MAM00482c" name="1-acylglycerol-3P-hexacosa" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C29H57O7P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00482c">
+            <rdf:Description rdf:about="#M_MAM00482c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M00482"/>
@@ -12734,10 +12733,10 @@
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         </annotation>
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-      <species metaid="MAM00483c" sboTerm="SBO:0000247" id="MAM00483c" name="1-acylglycerol-3P-hexecose" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C29H55O7P">
+      <species metaid="M_MAM00483c" sboTerm="SBO:0000247" id="M_MAM00483c" name="1-acylglycerol-3P-hexecose" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C29H55O7P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00483c">
+            <rdf:Description rdf:about="#M_MAM00483c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M00483"/>
@@ -12747,10 +12746,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM00484c" sboTerm="SBO:0000247" id="MAM00484c" name="1-acylglycerol-3P-laur" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C15H29O7P">
+      <species metaid="M_MAM00484c" sboTerm="SBO:0000247" id="M_MAM00484c" name="1-acylglycerol-3P-laur" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C15H29O7P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00484c">
+            <rdf:Description rdf:about="#M_MAM00484c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/LMGP10050015"/>
@@ -12762,10 +12761,10 @@
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         </annotation>
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-      <species metaid="MAM00485c" sboTerm="SBO:0000247" id="MAM00485c" name="1-acylglycerol-3P-LD-PC pool (liver tissue)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C4H6O7PR">
+      <species metaid="M_MAM00485c" sboTerm="SBO:0000247" id="M_MAM00485c" name="1-acylglycerol-3P-LD-PC pool (liver tissue)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C4H6O7PR">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00485c">
+            <rdf:Description rdf:about="#M_MAM00485c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:16975"/>
@@ -12779,10 +12778,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM00486c" sboTerm="SBO:0000247" id="MAM00486c" name="1-acylglycerol-3P-LD-PE pool (liver tissue)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C4H6O7PR">
+      <species metaid="M_MAM00486c" sboTerm="SBO:0000247" id="M_MAM00486c" name="1-acylglycerol-3P-LD-PE pool (liver tissue)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C4H6O7PR">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00486c">
+            <rdf:Description rdf:about="#M_MAM00486c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:16975"/>
@@ -12796,10 +12795,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM00487c" sboTerm="SBO:0000247" id="MAM00487c" name="1-acylglycerol-3P-LD-PI pool (liver tissue)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C4H6O7PR">
+      <species metaid="M_MAM00487c" sboTerm="SBO:0000247" id="M_MAM00487c" name="1-acylglycerol-3P-LD-PI pool (liver tissue)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C4H6O7PR">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00487c">
+            <rdf:Description rdf:about="#M_MAM00487c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:16975"/>
@@ -12813,10 +12812,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM00488c" sboTerm="SBO:0000247" id="MAM00488c" name="1-acylglycerol-3P-LD-PS pool (liver tissue)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C4H6O7PR">
+      <species metaid="M_MAM00488c" sboTerm="SBO:0000247" id="M_MAM00488c" name="1-acylglycerol-3P-LD-PS pool (liver tissue)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C4H6O7PR">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00488c">
+            <rdf:Description rdf:about="#M_MAM00488c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:16975"/>
@@ -12830,10 +12829,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00489c" sboTerm="SBO:0000247" id="MAM00489c" name="1-acylglycerol-3P-LD-SM pool (liver tissue)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C4H6O7PR">
+      <species metaid="M_MAM00489c" sboTerm="SBO:0000247" id="M_MAM00489c" name="1-acylglycerol-3P-LD-SM pool (liver tissue)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C4H6O7PR">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00489c">
+            <rdf:Description rdf:about="#M_MAM00489c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:16975"/>
@@ -12847,10 +12846,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00490c" sboTerm="SBO:0000247" id="MAM00490c" name="1-acylglycerol-3P-LD-TG1 pool (liver tissue)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C4H6O7PR">
+      <species metaid="M_MAM00490c" sboTerm="SBO:0000247" id="M_MAM00490c" name="1-acylglycerol-3P-LD-TG1 pool (liver tissue)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C4H6O7PR">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00490c">
+            <rdf:Description rdf:about="#M_MAM00490c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/mag_hs"/>
@@ -12865,10 +12864,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00491c" sboTerm="SBO:0000247" id="MAM00491c" name="1-acylglycerol-3P-lin" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C21H37O7P">
+      <species metaid="M_MAM00491c" sboTerm="SBO:0000247" id="M_MAM00491c" name="1-acylglycerol-3P-lin" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C21H37O7P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00491c">
+            <rdf:Description rdf:about="#M_MAM00491c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/LMGP10050017"/>
@@ -12880,10 +12879,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00492c" sboTerm="SBO:0000247" id="MAM00492c" name="1-acylglycerol-3P-linolen" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C21H35O7P">
+      <species metaid="M_MAM00492c" sboTerm="SBO:0000247" id="M_MAM00492c" name="1-acylglycerol-3P-linolen" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C21H35O7P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00492c">
+            <rdf:Description rdf:about="#M_MAM00492c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/LMGP10050035"/>
@@ -12896,10 +12895,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00493c" sboTerm="SBO:0000247" id="MAM00493c" name="1-acylglycerol-3P-myrist" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C17H33O7P">
+      <species metaid="M_MAM00493c" sboTerm="SBO:0000247" id="M_MAM00493c" name="1-acylglycerol-3P-myrist" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C17H33O7P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00493c">
+            <rdf:Description rdf:about="#M_MAM00493c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/LMGP10050007"/>
@@ -12911,10 +12910,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM00494c" sboTerm="SBO:0000247" id="MAM00494c" name="1-acylglycerol-3P-nanode" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C22H43O7P">
+      <species metaid="M_MAM00494c" sboTerm="SBO:0000247" id="M_MAM00494c" name="1-acylglycerol-3P-nanode" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C22H43O7P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00494c">
+            <rdf:Description rdf:about="#M_MAM00494c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/LMGP10050034"/>
@@ -12927,10 +12926,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM00495c" sboTerm="SBO:0000247" id="MAM00495c" name="1-acylglycerol-3P-ol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C21H39O7P">
+      <species metaid="M_MAM00495c" sboTerm="SBO:0000247" id="M_MAM00495c" name="1-acylglycerol-3P-ol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C21H39O7P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00495c">
+            <rdf:Description rdf:about="#M_MAM00495c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/LMGP10050008"/>
@@ -12942,10 +12941,10 @@
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         </annotation>
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-      <species metaid="MAM00496c" sboTerm="SBO:0000247" id="MAM00496c" name="1-acylglycerol-3P-palm" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C19H37O7P">
+      <species metaid="M_MAM00496c" sboTerm="SBO:0000247" id="M_MAM00496c" name="1-acylglycerol-3P-palm" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C19H37O7P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00496c">
+            <rdf:Description rdf:about="#M_MAM00496c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/LMGP10050006"/>
@@ -12957,10 +12956,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM00497c" sboTerm="SBO:0000247" id="MAM00497c" name="1-acylglycerol-3P-palmn" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C19H35O7P">
+      <species metaid="M_MAM00497c" sboTerm="SBO:0000247" id="M_MAM00497c" name="1-acylglycerol-3P-palmn" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C19H35O7P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00497c">
+            <rdf:Description rdf:about="#M_MAM00497c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/LMGP10050016"/>
@@ -12972,10 +12971,10 @@
           </rdf:RDF>
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-      <species metaid="MAM00498c" sboTerm="SBO:0000247" id="MAM00498c" name="1-acylglycerol-3P-pentade" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C18H35O7P">
+      <species metaid="M_MAM00498c" sboTerm="SBO:0000247" id="M_MAM00498c" name="1-acylglycerol-3P-pentade" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C18H35O7P">
         <annotation>
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-            <rdf:Description rdf:about="#MAM00498c">
+            <rdf:Description rdf:about="#M_MAM00498c">
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@@ -12988,10 +12987,10 @@
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-      <species metaid="MAM00499c" sboTerm="SBO:0000247" id="MAM00499c" name="1-acylglycerol-3P-stea" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C21H41O7P">
+      <species metaid="M_MAM00499c" sboTerm="SBO:0000247" id="M_MAM00499c" name="1-acylglycerol-3P-stea" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C21H41O7P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00499c">
+            <rdf:Description rdf:about="#M_MAM00499c">
               <bqbiol:is>
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                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/LMGP10050005"/>
@@ -13003,10 +13002,10 @@
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-      <species metaid="MAM00500c" sboTerm="SBO:0000247" id="MAM00500c" name="1-acylglycerol-3P-tetraco" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C27H53O7P">
+      <species metaid="M_MAM00500c" sboTerm="SBO:0000247" id="M_MAM00500c" name="1-acylglycerol-3P-tetraco" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C27H53O7P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00500c">
+            <rdf:Description rdf:about="#M_MAM00500c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M00500"/>
@@ -13016,10 +13015,10 @@
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-      <species metaid="MAM00501c" sboTerm="SBO:0000247" id="MAM00501c" name="1-acylglycerol-3P-trico" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C26H51O7P">
+      <species metaid="M_MAM00501c" sboTerm="SBO:0000247" id="M_MAM00501c" name="1-acylglycerol-3P-trico" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C26H51O7P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00501c">
+            <rdf:Description rdf:about="#M_MAM00501c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M00501"/>
@@ -13029,10 +13028,10 @@
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-      <species metaid="MAM00502c" sboTerm="SBO:0000247" id="MAM00502c" name="1-acylglycerol-3P-tridec" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C16H31O7P">
+      <species metaid="M_MAM00502c" sboTerm="SBO:0000247" id="M_MAM00502c" name="1-acylglycerol-3P-tridec" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C16H31O7P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00502c">
+            <rdf:Description rdf:about="#M_MAM00502c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/LMGP10050001"/>
@@ -13046,10 +13045,10 @@
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-      <species metaid="MAM00503c" sboTerm="SBO:0000247" id="MAM00503c" name="1-acylglycerol-chylomicron pool" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H7O4R">
+      <species metaid="M_MAM00503c" sboTerm="SBO:0000247" id="M_MAM00503c" name="1-acylglycerol-chylomicron pool" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H7O4R">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00503c">
+            <rdf:Description rdf:about="#M_MAM00503c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:17408"/>
@@ -13063,10 +13062,10 @@
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-      <species metaid="MAM00503e" sboTerm="SBO:0000247" id="MAM00503e" name="1-acylglycerol-chylomicron pool" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H7O4R">
+      <species metaid="M_MAM00503e" sboTerm="SBO:0000247" id="M_MAM00503e" name="1-acylglycerol-chylomicron pool" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H7O4R">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00503e">
+            <rdf:Description rdf:about="#M_MAM00503e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:17408"/>
@@ -13080,10 +13079,10 @@
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-      <species metaid="MAM00504c" sboTerm="SBO:0000247" id="MAM00504c" name="1-acylglycerol-LD-PC pool" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H7O4R">
+      <species metaid="M_MAM00504c" sboTerm="SBO:0000247" id="M_MAM00504c" name="1-acylglycerol-LD-PC pool" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H7O4R">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00504c">
+            <rdf:Description rdf:about="#M_MAM00504c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:17408"/>
@@ -13097,10 +13096,10 @@
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-      <species metaid="MAM00505c" sboTerm="SBO:0000247" id="MAM00505c" name="1-acylglycerol-LD-PE pool" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H7O4R">
+      <species metaid="M_MAM00505c" sboTerm="SBO:0000247" id="M_MAM00505c" name="1-acylglycerol-LD-PE pool" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H7O4R">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00505c">
+            <rdf:Description rdf:about="#M_MAM00505c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:17408"/>
@@ -13114,10 +13113,10 @@
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-      <species metaid="MAM00506c" sboTerm="SBO:0000247" id="MAM00506c" name="1-acylglycerol-LD-PI pool" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H7O4R">
+      <species metaid="M_MAM00506c" sboTerm="SBO:0000247" id="M_MAM00506c" name="1-acylglycerol-LD-PI pool" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H7O4R">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00506c">
+            <rdf:Description rdf:about="#M_MAM00506c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:17408"/>
@@ -13131,10 +13130,10 @@
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         </annotation>
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-      <species metaid="MAM00507c" sboTerm="SBO:0000247" id="MAM00507c" name="1-acylglycerol-LD-PS pool" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H7O4R">
+      <species metaid="M_MAM00507c" sboTerm="SBO:0000247" id="M_MAM00507c" name="1-acylglycerol-LD-PS pool" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H7O4R">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00507c">
+            <rdf:Description rdf:about="#M_MAM00507c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:17408"/>
@@ -13148,10 +13147,10 @@
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-      <species metaid="MAM00508c" sboTerm="SBO:0000247" id="MAM00508c" name="1-acylglycerol-LD-SM pool" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H7O4R">
+      <species metaid="M_MAM00508c" sboTerm="SBO:0000247" id="M_MAM00508c" name="1-acylglycerol-LD-SM pool" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H7O4R">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00508c">
+            <rdf:Description rdf:about="#M_MAM00508c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:17408"/>
@@ -13165,10 +13164,10 @@
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         </annotation>
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-      <species metaid="MAM00509c" sboTerm="SBO:0000247" id="MAM00509c" name="1-acylglycerol-LD-TG1 pool" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H7O4R">
+      <species metaid="M_MAM00509c" sboTerm="SBO:0000247" id="M_MAM00509c" name="1-acylglycerol-LD-TG1 pool" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H7O4R">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00509c">
+            <rdf:Description rdf:about="#M_MAM00509c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:17408"/>
@@ -13182,10 +13181,10 @@
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         </annotation>
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-      <species metaid="MAM00510c" sboTerm="SBO:0000247" id="MAM00510c" name="1-acylglycerol-VLDL pool" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H7O4R">
+      <species metaid="M_MAM00510c" sboTerm="SBO:0000247" id="M_MAM00510c" name="1-acylglycerol-VLDL pool" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H7O4R">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00510c">
+            <rdf:Description rdf:about="#M_MAM00510c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:17408"/>
@@ -13199,10 +13198,10 @@
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         </annotation>
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-      <species metaid="MAM00510e" sboTerm="SBO:0000247" id="MAM00510e" name="1-acylglycerol-VLDL pool" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H7O4R">
+      <species metaid="M_MAM00510e" sboTerm="SBO:0000247" id="M_MAM00510e" name="1-acylglycerol-VLDL pool" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H7O4R">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00510e">
+            <rdf:Description rdf:about="#M_MAM00510e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:17408"/>
@@ -13216,10 +13215,10 @@
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         </annotation>
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-      <species metaid="MAM00511c" sboTerm="SBO:0000247" id="MAM00511c" name="1-acyl-PE pool" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H13NO7PR">
+      <species metaid="M_MAM00511c" sboTerm="SBO:0000247" id="M_MAM00511c" name="1-acyl-PE pool" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H13NO7PR">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00511c">
+            <rdf:Description rdf:about="#M_MAM00511c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C04438"/>
@@ -13231,10 +13230,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00512c" sboTerm="SBO:0000247" id="MAM00512c" name="1-alkenyl-2-acylglycerol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H8O4R2">
+      <species metaid="M_MAM00512c" sboTerm="SBO:0000247" id="M_MAM00512c" name="1-alkenyl-2-acylglycerol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H8O4R2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00512c">
+            <rdf:Description rdf:about="#M_MAM00512c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C03454"/>
@@ -13246,10 +13245,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00513c" sboTerm="SBO:0000247" id="MAM00513c" name="1-alkyl-2-acetyl-sn-glycerol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H9O4R">
+      <species metaid="M_MAM00513c" sboTerm="SBO:0000247" id="M_MAM00513c" name="1-alkyl-2-acetyl-sn-glycerol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H9O4R">
         <annotation>
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-            <rdf:Description rdf:about="#MAM00513c">
+            <rdf:Description rdf:about="#M_MAM00513c">
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                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:16291"/>
@@ -13262,10 +13261,10 @@
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+      <species metaid="M_MAM00514c" sboTerm="SBO:0000247" id="M_MAM00514c" name="1-alkyl-2-acylglycerol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H6O4R2">
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           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00514c">
+            <rdf:Description rdf:about="#M_MAM00514c">
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@@ -13279,10 +13278,10 @@
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-      <species metaid="MAM00515c" sboTerm="SBO:0000247" id="MAM00515c" name="1-alkyl-2-acylglycerophosphoethanolamine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H12NO7PR2">
+      <species metaid="M_MAM00515c" sboTerm="SBO:0000247" id="M_MAM00515c" name="1-alkyl-2-acylglycerophosphoethanolamine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H12NO7PR2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00515c">
+            <rdf:Description rdf:about="#M_MAM00515c">
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                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ak2gpe_hs"/>
@@ -13295,10 +13294,10 @@
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-      <species metaid="MAM00516c" sboTerm="SBO:0000247" id="MAM00516c" name="1-alkyl-2-lysoglycerol-3-phosphocholine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H19NO6PR">
+      <species metaid="M_MAM00516c" sboTerm="SBO:0000247" id="M_MAM00516c" name="1-alkyl-2-lysoglycerol-3-phosphocholine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H19NO6PR">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00516c">
+            <rdf:Description rdf:about="#M_MAM00516c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ak2lgchol_hs"/>
@@ -13312,10 +13311,10 @@
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-      <species metaid="MAM00516e" sboTerm="SBO:0000247" id="MAM00516e" name="1-alkyl-2-lysoglycerol-3-phosphocholine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H19NO6PR">
+      <species metaid="M_MAM00516e" sboTerm="SBO:0000247" id="M_MAM00516e" name="1-alkyl-2-lysoglycerol-3-phosphocholine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H19NO6PR">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00516e">
+            <rdf:Description rdf:about="#M_MAM00516e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ak2lgchol_hs"/>
@@ -13329,10 +13328,10 @@
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-      <species metaid="MAM00518m" sboTerm="SBO:0000247" id="MAM00518m" name="1-alpha,24R,25-trihydroxyvitamin D2" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C28H44O4">
+      <species metaid="M_MAM00518m" sboTerm="SBO:0000247" id="M_MAM00518m" name="1-alpha,24R,25-trihydroxyvitamin D2" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C28H44O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00518m">
+            <rdf:Description rdf:about="#M_MAM00518m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/1a2425thvitd2"/>
@@ -13346,10 +13345,10 @@
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         </annotation>
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-      <species metaid="MAM00519m" sboTerm="SBO:0000247" id="MAM00519m" name="1-alpha,25-dihydroxyvitamin D2" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C28H44O3">
+      <species metaid="M_MAM00519m" sboTerm="SBO:0000247" id="M_MAM00519m" name="1-alpha,25-dihydroxyvitamin D2" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C28H44O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00519m">
+            <rdf:Description rdf:about="#M_MAM00519m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/1a25dhvitd2"/>
@@ -13364,10 +13363,10 @@
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-      <species metaid="MAM00520c" sboTerm="SBO:0000247" id="MAM00520c" name="1-deoxy-1-(N6-lysino)-D-fructose" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C12H25N2O7">
+      <species metaid="M_MAM00520c" sboTerm="SBO:0000247" id="M_MAM00520c" name="1-deoxy-1-(N6-lysino)-D-fructose" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C12H25N2O7">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00520c">
+            <rdf:Description rdf:about="#M_MAM00520c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM42"/>
@@ -13378,10 +13377,10 @@
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-      <species metaid="MAM00521c" sboTerm="SBO:0000247" id="MAM00521c" name="1D-myo-inositol-1,3,4,5,6-pentakisphosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-10" fbc:chemicalFormula="C6H7O21P5">
+      <species metaid="M_MAM00521c" sboTerm="SBO:0000247" id="M_MAM00521c" name="1D-myo-inositol-1,3,4,5,6-pentakisphosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-10" fbc:chemicalFormula="C6H7O21P5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00521c">
+            <rdf:Description rdf:about="#M_MAM00521c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/mi13456p"/>
@@ -13396,10 +13395,10 @@
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         </annotation>
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-      <species metaid="MAM00521n" sboTerm="SBO:0000247" id="MAM00521n" name="1D-myo-inositol-1,3,4,5,6-pentakisphosphate" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-10" fbc:chemicalFormula="C6H7O21P5">
+      <species metaid="M_MAM00521n" sboTerm="SBO:0000247" id="M_MAM00521n" name="1D-myo-inositol-1,3,4,5,6-pentakisphosphate" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-10" fbc:chemicalFormula="C6H7O21P5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00521n">
+            <rdf:Description rdf:about="#M_MAM00521n">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/mi13456p"/>
@@ -13414,10 +13413,10 @@
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-      <species metaid="MAM00522c" sboTerm="SBO:0000247" id="MAM00522c" name="1D-myo-inositol-1,3,4,5-tetrakisphosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-8" fbc:chemicalFormula="C6H8O18P4">
+      <species metaid="M_MAM00522c" sboTerm="SBO:0000247" id="M_MAM00522c" name="1D-myo-inositol-1,3,4,5-tetrakisphosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-8" fbc:chemicalFormula="C6H8O18P4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00522c">
+            <rdf:Description rdf:about="#M_MAM00522c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/mi1345p"/>
@@ -13434,10 +13433,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00522n" sboTerm="SBO:0000247" id="MAM00522n" name="1D-myo-inositol-1,3,4,5-tetrakisphosphate" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-8" fbc:chemicalFormula="C6H8O18P4">
+      <species metaid="M_MAM00522n" sboTerm="SBO:0000247" id="M_MAM00522n" name="1D-myo-inositol-1,3,4,5-tetrakisphosphate" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-8" fbc:chemicalFormula="C6H8O18P4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00522n">
+            <rdf:Description rdf:about="#M_MAM00522n">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/mi1345p"/>
@@ -13454,10 +13453,10 @@
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         </annotation>
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-      <species metaid="MAM00523c" sboTerm="SBO:0000247" id="MAM00523c" name="1D-myo-inositol-1,3,4,6-tetrakisphosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-8" fbc:chemicalFormula="C6H8O18P4">
+      <species metaid="M_MAM00523c" sboTerm="SBO:0000247" id="M_MAM00523c" name="1D-myo-inositol-1,3,4,6-tetrakisphosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-8" fbc:chemicalFormula="C6H8O18P4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00523c">
+            <rdf:Description rdf:about="#M_MAM00523c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/mi1346p"/>
@@ -13472,10 +13471,10 @@
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         </annotation>
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-      <species metaid="MAM00523n" sboTerm="SBO:0000247" id="MAM00523n" name="1D-myo-inositol-1,3,4,6-tetrakisphosphate" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-8" fbc:chemicalFormula="C6H8O18P4">
+      <species metaid="M_MAM00523n" sboTerm="SBO:0000247" id="M_MAM00523n" name="1D-myo-inositol-1,3,4,6-tetrakisphosphate" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-8" fbc:chemicalFormula="C6H8O18P4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00523n">
+            <rdf:Description rdf:about="#M_MAM00523n">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/mi1346p"/>
@@ -13490,10 +13489,10 @@
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         </annotation>
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-      <species metaid="MAM00524c" sboTerm="SBO:0000247" id="MAM00524c" name="1D-myo-inositol-1,3,4-trisphosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-6" fbc:chemicalFormula="C6H9O15P3">
+      <species metaid="M_MAM00524c" sboTerm="SBO:0000247" id="M_MAM00524c" name="1D-myo-inositol-1,3,4-trisphosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-6" fbc:chemicalFormula="C6H9O15P3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00524c">
+            <rdf:Description rdf:about="#M_MAM00524c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/mi134p"/>
@@ -13509,10 +13508,10 @@
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-      <species metaid="MAM00525c" sboTerm="SBO:0000247" id="MAM00525c" name="1D-myo-inositol-1,4,5,6-tetrakisphosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-8" fbc:chemicalFormula="C6H8O18P4">
+      <species metaid="M_MAM00525c" sboTerm="SBO:0000247" id="M_MAM00525c" name="1D-myo-inositol-1,4,5,6-tetrakisphosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-8" fbc:chemicalFormula="C6H8O18P4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00525c">
+            <rdf:Description rdf:about="#M_MAM00525c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/mi1456p"/>
@@ -13528,10 +13527,10 @@
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-      <species metaid="MAM00525n" sboTerm="SBO:0000247" id="MAM00525n" name="1D-myo-inositol-1,4,5,6-tetrakisphosphate" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-8" fbc:chemicalFormula="C6H8O18P4">
+      <species metaid="M_MAM00525n" sboTerm="SBO:0000247" id="M_MAM00525n" name="1D-myo-inositol-1,4,5,6-tetrakisphosphate" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-8" fbc:chemicalFormula="C6H8O18P4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00525n">
+            <rdf:Description rdf:about="#M_MAM00525n">
               <bqbiol:is>
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                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/mi1456p"/>
@@ -13547,10 +13546,10 @@
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-      <species metaid="MAM00526c" sboTerm="SBO:0000247" id="MAM00526c" name="1D-myo-inositol-1,4-bisphosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C6H10O12P2">
+      <species metaid="M_MAM00526c" sboTerm="SBO:0000247" id="M_MAM00526c" name="1D-myo-inositol-1,4-bisphosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C6H10O12P2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00526c">
+            <rdf:Description rdf:about="#M_MAM00526c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/mi14p"/>
@@ -13565,10 +13564,10 @@
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-      <species metaid="MAM00526n" sboTerm="SBO:0000247" id="MAM00526n" name="1D-myo-inositol-1,4-bisphosphate" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C6H10O12P2">
+      <species metaid="M_MAM00526n" sboTerm="SBO:0000247" id="M_MAM00526n" name="1D-myo-inositol-1,4-bisphosphate" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C6H10O12P2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00526n">
+            <rdf:Description rdf:about="#M_MAM00526n">
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                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/mi14p"/>
@@ -13583,10 +13582,10 @@
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-      <species metaid="MAM00528c" sboTerm="SBO:0000247" id="MAM00528c" name="1D-myo-inositol-3,4-bisphosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C6H10O12P2">
+      <species metaid="M_MAM00528c" sboTerm="SBO:0000247" id="M_MAM00528c" name="1D-myo-inositol-3,4-bisphosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C6H10O12P2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00528c">
+            <rdf:Description rdf:about="#M_MAM00528c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/mi34p"/>
@@ -13603,10 +13602,10 @@
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-      <species metaid="MAM00529c" sboTerm="SBO:0000247" id="MAM00529c" name="1D-myo-inositol-3-phosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H11O9P">
+      <species metaid="M_MAM00529c" sboTerm="SBO:0000247" id="M_MAM00529c" name="1D-myo-inositol-3-phosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H11O9P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00529c">
+            <rdf:Description rdf:about="#M_MAM00529c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/mi3p__D"/>
@@ -13621,10 +13620,10 @@
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         </annotation>
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-      <species metaid="MAM00530c" sboTerm="SBO:0000247" id="MAM00530c" name="1D-myo-inositol-4-phosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H11O9P">
+      <species metaid="M_MAM00530c" sboTerm="SBO:0000247" id="M_MAM00530c" name="1D-myo-inositol-4-phosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H11O9P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00530c">
+            <rdf:Description rdf:about="#M_MAM00530c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/mi4p__D"/>
@@ -13638,10 +13637,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM00531c" sboTerm="SBO:0000247" id="MAM00531c" name="1D-myo-inositol-bisdiphosphate-tetrakisphosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-14" fbc:chemicalFormula="C6H6O30P8">
+      <species metaid="M_MAM00531c" sboTerm="SBO:0000247" id="M_MAM00531c" name="1D-myo-inositol-bisdiphosphate-tetrakisphosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-14" fbc:chemicalFormula="C6H6O30P8">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00531c">
+            <rdf:Description rdf:about="#M_MAM00531c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ppmi1346p"/>
@@ -13655,10 +13654,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00531n" sboTerm="SBO:0000247" id="MAM00531n" name="1D-myo-inositol-bisdiphosphate-tetrakisphosphate" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-14" fbc:chemicalFormula="C6H6O30P8">
+      <species metaid="M_MAM00531n" sboTerm="SBO:0000247" id="M_MAM00531n" name="1D-myo-inositol-bisdiphosphate-tetrakisphosphate" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-14" fbc:chemicalFormula="C6H6O30P8">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00531n">
+            <rdf:Description rdf:about="#M_MAM00531n">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ppmi1346p"/>
@@ -13672,10 +13671,10 @@
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         </annotation>
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-      <species metaid="MAM00532c" sboTerm="SBO:0000247" id="MAM00532c" name="1-hexadecylglycerol-3-phosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C19H39O6P">
+      <species metaid="M_MAM00532c" sboTerm="SBO:0000247" id="M_MAM00532c" name="1-hexadecylglycerol-3-phosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C19H39O6P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00532c">
+            <rdf:Description rdf:about="#M_MAM00532c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/LMGP10060005"/>
@@ -13687,10 +13686,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM00533c" sboTerm="SBO:0000247" id="MAM00533c" name="1-hydroperoxy-8-carboxyoctyl-3,4-epoxynon-(2E)-enyl-ether" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H31O6">
+      <species metaid="M_MAM00533c" sboTerm="SBO:0000247" id="M_MAM00533c" name="1-hydroperoxy-8-carboxyoctyl-3,4-epoxynon-(2E)-enyl-ether" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H31O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00533c">
+            <rdf:Description rdf:about="#M_MAM00533c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM164037"/>
@@ -13701,10 +13700,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM00534c" sboTerm="SBO:0000247" id="MAM00534c" name="1-lyso-2-arachidonoyl-phosphatidate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C23H37O7P">
+      <species metaid="M_MAM00534c" sboTerm="SBO:0000247" id="M_MAM00534c" name="1-lyso-2-arachidonoyl-phosphatidate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C23H37O7P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00534c">
+            <rdf:Description rdf:about="#M_MAM00534c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM32836"/>
@@ -13716,10 +13715,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM00535c" sboTerm="SBO:0000247" id="MAM00535c" name="1-lysolecithin pool" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H19NO7PR">
+      <species metaid="M_MAM00535c" sboTerm="SBO:0000247" id="M_MAM00535c" name="1-lysolecithin pool" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H19NO7PR">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00535c">
+            <rdf:Description rdf:about="#M_MAM00535c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C04233"/>
@@ -13732,10 +13731,10 @@
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         </annotation>
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-      <species metaid="MAM00536c" sboTerm="SBO:0000247" id="MAM00536c" name="1-methylnicotinamide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C7H9N2O">
+      <species metaid="M_MAM00536c" sboTerm="SBO:0000247" id="M_MAM00536c" name="1-methylnicotinamide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C7H9N2O">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00536c">
+            <rdf:Description rdf:about="#M_MAM00536c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/1mncam"/>
@@ -13751,10 +13750,10 @@
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         </annotation>
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-      <species metaid="MAM00536e" sboTerm="SBO:0000247" id="MAM00536e" name="1-methylnicotinamide" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C7H9N2O">
+      <species metaid="M_MAM00536e" sboTerm="SBO:0000247" id="M_MAM00536e" name="1-methylnicotinamide" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C7H9N2O">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00536e">
+            <rdf:Description rdf:about="#M_MAM00536e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/1mncam"/>
@@ -13770,10 +13769,10 @@
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         </annotation>
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-      <species metaid="MAM00538c" sboTerm="SBO:0000247" id="MAM00538c" name="1-naphthol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H8O">
+      <species metaid="M_MAM00538c" sboTerm="SBO:0000247" id="M_MAM00538c" name="1-naphthol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H8O">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00538c">
+            <rdf:Description rdf:about="#M_MAM00538c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:10319"/>
@@ -13786,10 +13785,10 @@
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         </annotation>
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-      <species metaid="MAM00539c" sboTerm="SBO:0000247" id="MAM00539c" name="1-naphthylamine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H9N">
+      <species metaid="M_MAM00539c" sboTerm="SBO:0000247" id="M_MAM00539c" name="1-naphthylamine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H9N">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00539c">
+            <rdf:Description rdf:about="#M_MAM00539c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C14790"/>
@@ -13801,10 +13800,10 @@
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-      <species metaid="MAM00540c" sboTerm="SBO:0000247" id="MAM00540c" name="1-nitro-5,6-dihydroxy-dihydronaphthalene" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H9NO4">
+      <species metaid="M_MAM00540c" sboTerm="SBO:0000247" id="M_MAM00540c" name="1-nitro-5,6-dihydroxy-dihydronaphthalene" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H9NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00540c">
+            <rdf:Description rdf:about="#M_MAM00540c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C14801"/>
@@ -13816,10 +13815,10 @@
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-      <species metaid="MAM00541c" sboTerm="SBO:0000247" id="MAM00541c" name="1-nitro-5-glutathionyl-6-hydroxy-5,6-dihydronaphthalene" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H24N4O9S">
+      <species metaid="M_MAM00541c" sboTerm="SBO:0000247" id="M_MAM00541c" name="1-nitro-5-glutathionyl-6-hydroxy-5,6-dihydronaphthalene" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H24N4O9S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00541c">
+            <rdf:Description rdf:about="#M_MAM00541c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C14806"/>
@@ -13831,10 +13830,10 @@
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-      <species metaid="MAM00542c" sboTerm="SBO:0000247" id="MAM00542c" name="1-nitro-5-hydroxy-6-glutathionyl-5,6-dihydronaphthalene" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H24N4O9S">
+      <species metaid="M_MAM00542c" sboTerm="SBO:0000247" id="M_MAM00542c" name="1-nitro-5-hydroxy-6-glutathionyl-5,6-dihydronaphthalene" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H24N4O9S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00542c">
+            <rdf:Description rdf:about="#M_MAM00542c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C14805"/>
@@ -13846,10 +13845,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM00543c" sboTerm="SBO:0000247" id="MAM00543c" name="1-nitro-7-glutathionyl-8-hydroxy-7,8-dihydronaphthalene" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H24N4O9S">
+      <species metaid="M_MAM00543c" sboTerm="SBO:0000247" id="M_MAM00543c" name="1-nitro-7-glutathionyl-8-hydroxy-7,8-dihydronaphthalene" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H24N4O9S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00543c">
+            <rdf:Description rdf:about="#M_MAM00543c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C14804"/>
@@ -13861,10 +13860,10 @@
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         </annotation>
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-      <species metaid="MAM00544c" sboTerm="SBO:0000247" id="MAM00544c" name="1-nitro-7-hydroxy-8-glutathionyl-7,8-dihydronaphthalene" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H24N4O9S">
+      <species metaid="M_MAM00544c" sboTerm="SBO:0000247" id="M_MAM00544c" name="1-nitro-7-hydroxy-8-glutathionyl-7,8-dihydronaphthalene" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H24N4O9S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00544c">
+            <rdf:Description rdf:about="#M_MAM00544c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C14803"/>
@@ -13876,10 +13875,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM00545c" sboTerm="SBO:0000247" id="MAM00545c" name="1-nitronaphthalene" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H6NO2">
+      <species metaid="M_MAM00545c" sboTerm="SBO:0000247" id="M_MAM00545c" name="1-nitronaphthalene" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H6NO2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00545c">
+            <rdf:Description rdf:about="#M_MAM00545c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:34104"/>
@@ -13892,10 +13891,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM00545e" sboTerm="SBO:0000247" id="MAM00545e" name="1-nitronaphthalene" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H6NO2">
+      <species metaid="M_MAM00545e" sboTerm="SBO:0000247" id="M_MAM00545e" name="1-nitronaphthalene" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H6NO2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00545e">
+            <rdf:Description rdf:about="#M_MAM00545e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:34104"/>
@@ -13908,10 +13907,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM00546c" sboTerm="SBO:0000247" id="MAM00546c" name="1-nitronaphthalene-5,6-oxide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H7NO3">
+      <species metaid="M_MAM00546c" sboTerm="SBO:0000247" id="M_MAM00546c" name="1-nitronaphthalene-5,6-oxide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H7NO3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00546c">
+            <rdf:Description rdf:about="#M_MAM00546c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C14800"/>
@@ -13923,10 +13922,10 @@
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         </annotation>
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-      <species metaid="MAM00547c" sboTerm="SBO:0000247" id="MAM00547c" name="1-nitronaphthalene-7,8-oxide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H7NO3">
+      <species metaid="M_MAM00547c" sboTerm="SBO:0000247" id="M_MAM00547c" name="1-nitronaphthalene-7,8-oxide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H7NO3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00547c">
+            <rdf:Description rdf:about="#M_MAM00547c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C14802"/>
@@ -13938,10 +13937,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00548c" sboTerm="SBO:0000247" id="MAM00548c" name="1-nitrosonaphthalene" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H7NO">
+      <species metaid="M_MAM00548c" sboTerm="SBO:0000247" id="M_MAM00548c" name="1-nitrosonaphthalene" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H7NO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00548c">
+            <rdf:Description rdf:about="#M_MAM00548c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C14788"/>
@@ -13953,10 +13952,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00549c" sboTerm="SBO:0000247" id="MAM00549c" name="1-organyl-2-lyso-sn-glycero-3-phosphocholine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H19NO6PR">
+      <species metaid="M_MAM00549c" sboTerm="SBO:0000247" id="M_MAM00549c" name="1-organyl-2-lyso-sn-glycero-3-phosphocholine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H19NO6PR">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00549c">
+            <rdf:Description rdf:about="#M_MAM00549c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C04317"/>
@@ -13968,10 +13967,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00549e" sboTerm="SBO:0000247" id="MAM00549e" name="1-organyl-2-lyso-sn-glycero-3-phosphocholine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H19NO6PR">
+      <species metaid="M_MAM00549e" sboTerm="SBO:0000247" id="M_MAM00549e" name="1-organyl-2-lyso-sn-glycero-3-phosphocholine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H19NO6PR">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00549e">
+            <rdf:Description rdf:about="#M_MAM00549e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C04317"/>
@@ -13983,10 +13982,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00550x" sboTerm="SBO:0000247" id="MAM00550x" name="1-palmitoyl-dihydroxyacetone-phosphate" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C19H35O7P">
+      <species metaid="M_MAM00550x" sboTerm="SBO:0000247" id="M_MAM00550x" name="1-palmitoyl-dihydroxyacetone-phosphate" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C19H35O7P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00550x">
+            <rdf:Description rdf:about="#M_MAM00550x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:17868"/>
@@ -13999,10 +13998,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00551c" sboTerm="SBO:0000247" id="MAM00551c" name="1-phosphatidyl-1D-myo-inositol-3,4-bisphosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C11H14O19P3R2">
+      <species metaid="M_MAM00551c" sboTerm="SBO:0000247" id="M_MAM00551c" name="1-phosphatidyl-1D-myo-inositol-3,4-bisphosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C11H14O19P3R2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00551c">
+            <rdf:Description rdf:about="#M_MAM00551c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pail34p_hs"/>
@@ -14016,10 +14015,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00551n" sboTerm="SBO:0000247" id="MAM00551n" name="1-phosphatidyl-1D-myo-inositol-3,4-bisphosphate" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C11H14O19P3R2">
+      <species metaid="M_MAM00551n" sboTerm="SBO:0000247" id="M_MAM00551n" name="1-phosphatidyl-1D-myo-inositol-3,4-bisphosphate" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C11H14O19P3R2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00551n">
+            <rdf:Description rdf:about="#M_MAM00551n">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pail34p_hs"/>
@@ -14033,10 +14032,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00552c" sboTerm="SBO:0000247" id="MAM00552c" name="1-phosphatidyl-1D-myo-inositol-3-phosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C11H15O16P2R2">
+      <species metaid="M_MAM00552c" sboTerm="SBO:0000247" id="M_MAM00552c" name="1-phosphatidyl-1D-myo-inositol-3-phosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C11H15O16P2R2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00552c">
+            <rdf:Description rdf:about="#M_MAM00552c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pail3p_hs"/>
@@ -14050,10 +14049,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00552n" sboTerm="SBO:0000247" id="MAM00552n" name="1-phosphatidyl-1D-myo-inositol-3-phosphate" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C11H15O16P2R2">
+      <species metaid="M_MAM00552n" sboTerm="SBO:0000247" id="M_MAM00552n" name="1-phosphatidyl-1D-myo-inositol-3-phosphate" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C11H15O16P2R2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00552n">
+            <rdf:Description rdf:about="#M_MAM00552n">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pail3p_hs"/>
@@ -14067,10 +14066,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00552r" sboTerm="SBO:0000247" id="MAM00552r" name="1-phosphatidyl-1D-myo-inositol-3-phosphate" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C11H15O16P2R2">
+      <species metaid="M_MAM00552r" sboTerm="SBO:0000247" id="M_MAM00552r" name="1-phosphatidyl-1D-myo-inositol-3-phosphate" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C11H15O16P2R2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00552r">
+            <rdf:Description rdf:about="#M_MAM00552r">
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                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pail3p_hs"/>
@@ -14084,10 +14083,10 @@
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-      <species metaid="MAM00553c" sboTerm="SBO:0000247" id="MAM00553c" name="1-phosphatidyl-1D-myo-inositol-4-phosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C11H15O16P2R2">
+      <species metaid="M_MAM00553c" sboTerm="SBO:0000247" id="M_MAM00553c" name="1-phosphatidyl-1D-myo-inositol-4-phosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C11H15O16P2R2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00553c">
+            <rdf:Description rdf:about="#M_MAM00553c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pail4p_hs"/>
@@ -14101,10 +14100,10 @@
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-      <species metaid="MAM00553n" sboTerm="SBO:0000247" id="MAM00553n" name="1-phosphatidyl-1D-myo-inositol-4-phosphate" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C11H15O16P2R2">
+      <species metaid="M_MAM00553n" sboTerm="SBO:0000247" id="M_MAM00553n" name="1-phosphatidyl-1D-myo-inositol-4-phosphate" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C11H15O16P2R2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00553n">
+            <rdf:Description rdf:about="#M_MAM00553n">
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                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pail4p_hs"/>
@@ -14118,10 +14117,10 @@
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-      <species metaid="MAM00554c" sboTerm="SBO:0000247" id="MAM00554c" name="1-phosphatidyl-1D-myo-inositol-5-phosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C11H15O16P2R2">
+      <species metaid="M_MAM00554c" sboTerm="SBO:0000247" id="M_MAM00554c" name="1-phosphatidyl-1D-myo-inositol-5-phosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C11H15O16P2R2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00554c">
+            <rdf:Description rdf:about="#M_MAM00554c">
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                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pail5p_hs"/>
@@ -14136,10 +14135,10 @@
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         </annotation>
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-      <species metaid="MAM00554g" sboTerm="SBO:0000247" id="MAM00554g" name="1-phosphatidyl-1D-myo-inositol-5-phosphate" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C11H15O16P2R2">
+      <species metaid="M_MAM00554g" sboTerm="SBO:0000247" id="M_MAM00554g" name="1-phosphatidyl-1D-myo-inositol-5-phosphate" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C11H15O16P2R2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00554g">
+            <rdf:Description rdf:about="#M_MAM00554g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pail5p_hs"/>
@@ -14154,10 +14153,10 @@
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-      <species metaid="MAM00554n" sboTerm="SBO:0000247" id="MAM00554n" name="1-phosphatidyl-1D-myo-inositol-5-phosphate" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C11H15O16P2R2">
+      <species metaid="M_MAM00554n" sboTerm="SBO:0000247" id="M_MAM00554n" name="1-phosphatidyl-1D-myo-inositol-5-phosphate" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C11H15O16P2R2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00554n">
+            <rdf:Description rdf:about="#M_MAM00554n">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pail5p_hs"/>
@@ -14172,10 +14171,10 @@
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         </annotation>
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-      <species metaid="MAM00554r" sboTerm="SBO:0000247" id="MAM00554r" name="1-phosphatidyl-1D-myo-inositol-5-phosphate" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C11H15O16P2R2">
+      <species metaid="M_MAM00554r" sboTerm="SBO:0000247" id="M_MAM00554r" name="1-phosphatidyl-1D-myo-inositol-5-phosphate" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C11H15O16P2R2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00554r">
+            <rdf:Description rdf:about="#M_MAM00554r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pail5p_hs"/>
@@ -14190,10 +14189,10 @@
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         </annotation>
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-      <species metaid="MAM00555c" sboTerm="SBO:0000247" id="MAM00555c" name="1-phosphatidyl-myo-inositol-3,5-bisphosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C11H14O19P3R2">
+      <species metaid="M_MAM00555c" sboTerm="SBO:0000247" id="M_MAM00555c" name="1-phosphatidyl-myo-inositol-3,5-bisphosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C11H14O19P3R2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00555c">
+            <rdf:Description rdf:about="#M_MAM00555c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C11556"/>
@@ -14205,10 +14204,10 @@
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         </annotation>
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-      <species metaid="MAM00555g" sboTerm="SBO:0000247" id="MAM00555g" name="1-phosphatidyl-myo-inositol-3,5-bisphosphate" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C11H14O19P3R2">
+      <species metaid="M_MAM00555g" sboTerm="SBO:0000247" id="M_MAM00555g" name="1-phosphatidyl-myo-inositol-3,5-bisphosphate" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C11H14O19P3R2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00555g">
+            <rdf:Description rdf:about="#M_MAM00555g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C11556"/>
@@ -14220,10 +14219,10 @@
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         </annotation>
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-      <species metaid="MAM00555r" sboTerm="SBO:0000247" id="MAM00555r" name="1-phosphatidyl-myo-inositol-3,5-bisphosphate" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C11H14O19P3R2">
+      <species metaid="M_MAM00555r" sboTerm="SBO:0000247" id="M_MAM00555r" name="1-phosphatidyl-myo-inositol-3,5-bisphosphate" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C11H14O19P3R2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00555r">
+            <rdf:Description rdf:about="#M_MAM00555r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C11556"/>
@@ -14235,10 +14234,10 @@
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         </annotation>
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-      <species metaid="MAM00556c" sboTerm="SBO:0000247" id="MAM00556c" name="1-piperideine-6-carboxylate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H8NO2">
+      <species metaid="M_MAM00556c" sboTerm="SBO:0000247" id="M_MAM00556c" name="1-piperideine-6-carboxylate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H8NO2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00556c">
+            <rdf:Description rdf:about="#M_MAM00556c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/thp2c"/>
@@ -14255,10 +14254,10 @@
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         </annotation>
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-      <species metaid="MAM00556x" sboTerm="SBO:0000247" id="MAM00556x" name="1-piperideine-6-carboxylate" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H8NO2">
+      <species metaid="M_MAM00556x" sboTerm="SBO:0000247" id="M_MAM00556x" name="1-piperideine-6-carboxylate" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H8NO2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00556x">
+            <rdf:Description rdf:about="#M_MAM00556x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/thp2c"/>
@@ -14275,10 +14274,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM00557c" sboTerm="SBO:0000247" id="MAM00557c" name="1-pyrroline" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C4H8N">
+      <species metaid="M_MAM00557c" sboTerm="SBO:0000247" id="M_MAM00557c" name="1-pyrroline" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C4H8N">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00557c">
+            <rdf:Description rdf:about="#M_MAM00557c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:19092"/>
@@ -14292,10 +14291,10 @@
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-      <species metaid="MAM00557m" sboTerm="SBO:0000247" id="MAM00557m" name="1-pyrroline" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C4H8N">
+      <species metaid="M_MAM00557m" sboTerm="SBO:0000247" id="M_MAM00557m" name="1-pyrroline" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C4H8N">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00557m">
+            <rdf:Description rdf:about="#M_MAM00557m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:19092"/>
@@ -14309,10 +14308,10 @@
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         </annotation>
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-      <species metaid="MAM00558c" sboTerm="SBO:0000247" id="MAM00558c" name="1-pyrroline-2-carboxylate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C5H6NO2">
+      <species metaid="M_MAM00558c" sboTerm="SBO:0000247" id="M_MAM00558c" name="1-pyrroline-2-carboxylate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C5H6NO2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00558c">
+            <rdf:Description rdf:about="#M_MAM00558c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/1p2cbxl"/>
@@ -14328,10 +14327,10 @@
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         </annotation>
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-      <species metaid="MAM00559c" sboTerm="SBO:0000247" id="MAM00559c" name="1-pyrroline-5-carboxylate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C5H6NO2">
+      <species metaid="M_MAM00559c" sboTerm="SBO:0000247" id="M_MAM00559c" name="1-pyrroline-5-carboxylate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C5H6NO2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00559c">
+            <rdf:Description rdf:about="#M_MAM00559c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/1pyr5c"/>
@@ -14346,10 +14345,10 @@
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         </annotation>
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-      <species metaid="MAM00559m" sboTerm="SBO:0000247" id="MAM00559m" name="1-pyrroline-5-carboxylate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C5H6NO2">
+      <species metaid="M_MAM00559m" sboTerm="SBO:0000247" id="M_MAM00559m" name="1-pyrroline-5-carboxylate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C5H6NO2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00559m">
+            <rdf:Description rdf:about="#M_MAM00559m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/1pyr5c"/>
@@ -14364,10 +14363,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM00560c" sboTerm="SBO:0000247" id="MAM00560c" name="1-radyl-2-acyl-sn-glycero-3-phosphocholine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H18NO7PR2">
+      <species metaid="M_MAM00560c" sboTerm="SBO:0000247" id="M_MAM00560c" name="1-radyl-2-acyl-sn-glycero-3-phosphocholine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H18NO7PR2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00560c">
+            <rdf:Description rdf:about="#M_MAM00560c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ak2gchol_hs"/>
@@ -14381,10 +14380,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM00561c" sboTerm="SBO:0000247" id="MAM00561c" name="2-(alpha-hydroxyethyl)thiamine-diphosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C14H20N4O8P2S">
+      <species metaid="M_MAM00561c" sboTerm="SBO:0000247" id="M_MAM00561c" name="2-(alpha-hydroxyethyl)thiamine-diphosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C14H20N4O8P2S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00561c">
+            <rdf:Description rdf:about="#M_MAM00561c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:978"/>
@@ -14397,10 +14396,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM00562m" sboTerm="SBO:0000247" id="MAM00562m" name="2(R),6-dimethyl-heptanoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C30H48N7O17P3S">
+      <species metaid="M_MAM00562m" sboTerm="SBO:0000247" id="M_MAM00562m" name="2(R),6-dimethyl-heptanoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C30H48N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00562m">
+            <rdf:Description rdf:about="#M_MAM00562m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM34616"/>
@@ -14411,10 +14410,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM00563c" sboTerm="SBO:0000247" id="MAM00563c" name="2(S),6-dimethyl-heptanoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C30H48N7O17P3S">
+      <species metaid="M_MAM00563c" sboTerm="SBO:0000247" id="M_MAM00563c" name="2(S),6-dimethyl-heptanoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C30H48N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00563c">
+            <rdf:Description rdf:about="#M_MAM00563c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dmhptcoa"/>
@@ -14427,10 +14426,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00563m" sboTerm="SBO:0000247" id="MAM00563m" name="2(S),6-dimethyl-heptanoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C30H48N7O17P3S">
+      <species metaid="M_MAM00563m" sboTerm="SBO:0000247" id="M_MAM00563m" name="2(S),6-dimethyl-heptanoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C30H48N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00563m">
+            <rdf:Description rdf:about="#M_MAM00563m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dmhptcoa"/>
@@ -14443,10 +14442,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM00564x" sboTerm="SBO:0000247" id="MAM00564x" name="2(S)-pristanal" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H38O">
+      <species metaid="M_MAM00564x" sboTerm="SBO:0000247" id="M_MAM00564x" name="2(S)-pristanal" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H38O">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00564x">
+            <rdf:Description rdf:about="#M_MAM00564x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/hmdb/HMDB01958"/>
@@ -14460,10 +14459,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM00565c" sboTerm="SBO:0000247" id="MAM00565c" name="2-(S-glutathionyl)acetyl chloride" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C12H17ClN3O7S">
+      <species metaid="M_MAM00565c" sboTerm="SBO:0000247" id="M_MAM00565c" name="2-(S-glutathionyl)acetyl chloride" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C12H17ClN3O7S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00565c">
+            <rdf:Description rdf:about="#M_MAM00565c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C14865"/>
@@ -14475,10 +14474,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00566c" sboTerm="SBO:0000247" id="MAM00566c" name="2-(S-glutathionyl)acetyl glutathione" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C22H32N6O13S2">
+      <species metaid="M_MAM00566c" sboTerm="SBO:0000247" id="M_MAM00566c" name="2-(S-glutathionyl)acetyl glutathione" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C22H32N6O13S2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00566c">
+            <rdf:Description rdf:about="#M_MAM00566c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C14863"/>
@@ -14490,10 +14489,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00567c" sboTerm="SBO:0000247" id="MAM00567c" name="2,2-dichloro-1,1-ethanediol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C2H4Cl2O2">
+      <species metaid="M_MAM00567c" sboTerm="SBO:0000247" id="M_MAM00567c" name="2,2-dichloro-1,1-ethanediol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C2H4Cl2O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00567c">
+            <rdf:Description rdf:about="#M_MAM00567c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C14860"/>
@@ -14505,10 +14504,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00568c" sboTerm="SBO:0000247" id="MAM00568c" name="2,2-dichloroacetaldehyde" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C2H2Cl2O">
+      <species metaid="M_MAM00568c" sboTerm="SBO:0000247" id="M_MAM00568c" name="2,2-dichloroacetaldehyde" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C2H2Cl2O">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00568c">
+            <rdf:Description rdf:about="#M_MAM00568c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C14858"/>
@@ -14520,10 +14519,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00569c" sboTerm="SBO:0000247" id="MAM00569c" name="2,3-bisphospho-D-glycerate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C3H3O10P2">
+      <species metaid="M_MAM00569c" sboTerm="SBO:0000247" id="M_MAM00569c" name="2,3-bisphospho-D-glycerate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C3H3O10P2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00569c">
+            <rdf:Description rdf:about="#M_MAM00569c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/23dpg"/>
@@ -14538,10 +14537,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00571c" sboTerm="SBO:0000247" id="MAM00571c" name="2,3-dihydro-2-S-glutathionyl-3-hydroxy bromobenzene" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C16H22BrN3O7S">
+      <species metaid="M_MAM00571c" sboTerm="SBO:0000247" id="M_MAM00571c" name="2,3-dihydro-2-S-glutathionyl-3-hydroxy bromobenzene" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C16H22BrN3O7S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00571c">
+            <rdf:Description rdf:about="#M_MAM00571c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C14848"/>
@@ -14553,10 +14552,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00572c" sboTerm="SBO:0000247" id="MAM00572c" name="2,3-diketo-5-methylthiopentyl-1-phosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H9O6PS">
+      <species metaid="M_MAM00572c" sboTerm="SBO:0000247" id="M_MAM00572c" name="2,3-diketo-5-methylthiopentyl-1-phosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H9O6PS">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00572c">
+            <rdf:Description rdf:about="#M_MAM00572c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dkmpp"/>
@@ -14571,10 +14570,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00573c" sboTerm="SBO:0000247" id="MAM00573c" name="2,3-diketo-L-gulonate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H7O7">
+      <species metaid="M_MAM00573c" sboTerm="SBO:0000247" id="M_MAM00573c" name="2,3-diketo-L-gulonate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H7O7">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00573c">
+            <rdf:Description rdf:about="#M_MAM00573c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/23doguln"/>
@@ -14590,10 +14589,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00574c" sboTerm="SBO:0000247" id="MAM00574c" name="2,5-diamino-6-(5-triphosphoryl-3,4-trihydroxy-2-oxopentyl)-amino-4-oxopyrimidine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C9H14N5O14P3">
+      <species metaid="M_MAM00574c" sboTerm="SBO:0000247" id="M_MAM00574c" name="2,5-diamino-6-(5-triphosphoryl-3,4-trihydroxy-2-oxopentyl)-amino-4-oxopyrimidine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C9H14N5O14P3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00574c">
+            <rdf:Description rdf:about="#M_MAM00574c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C06148"/>
@@ -14605,10 +14604,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00574n" sboTerm="SBO:0000247" id="MAM00574n" name="2,5-diamino-6-(5-triphosphoryl-3,4-trihydroxy-2-oxopentyl)-amino-4-oxopyrimidine" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C9H14N5O14P3">
+      <species metaid="M_MAM00574n" sboTerm="SBO:0000247" id="M_MAM00574n" name="2,5-diamino-6-(5-triphosphoryl-3,4-trihydroxy-2-oxopentyl)-amino-4-oxopyrimidine" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C9H14N5O14P3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00574n">
+            <rdf:Description rdf:about="#M_MAM00574n">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C06148"/>
@@ -14620,10 +14619,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00575c" sboTerm="SBO:0000247" id="MAM00575c" name="2,5-diaminopyrimidine nucleoside triphosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C9H14N5O14P3">
+      <species metaid="M_MAM00575c" sboTerm="SBO:0000247" id="M_MAM00575c" name="2,5-diaminopyrimidine nucleoside triphosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C9H14N5O14P3">
         <annotation>
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+            <rdf:Description rdf:about="#M_MAM00575c">
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@@ -14636,10 +14635,10 @@
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+      <species metaid="M_MAM00575n" sboTerm="SBO:0000247" id="M_MAM00575n" name="2,5-diaminopyrimidine nucleoside triphosphate" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C9H14N5O14P3">
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-            <rdf:Description rdf:about="#MAM00575n">
+            <rdf:Description rdf:about="#M_MAM00575n">
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@@ -14652,10 +14651,10 @@
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+      <species metaid="M_MAM00576c" sboTerm="SBO:0000247" id="M_MAM00576c" name="2,5-dihydroxybenzoate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C7H5O4">
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-            <rdf:Description rdf:about="#MAM00576c">
+            <rdf:Description rdf:about="#M_MAM00576c">
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@@ -14670,10 +14669,10 @@
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+      <species metaid="M_MAM00577c" sboTerm="SBO:0000247" id="M_MAM00577c" name="2,6-dimethylheptanoyl-carnitine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C16H31NO4">
         <annotation>
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-            <rdf:Description rdf:about="#MAM00577c">
+            <rdf:Description rdf:about="#M_MAM00577c">
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@@ -14687,10 +14686,10 @@
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+      <species metaid="M_MAM00577m" sboTerm="SBO:0000247" id="M_MAM00577m" name="2,6-dimethylheptanoyl-carnitine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C16H31NO4">
         <annotation>
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-            <rdf:Description rdf:about="#MAM00577m">
+            <rdf:Description rdf:about="#M_MAM00577m">
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                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dmhptcrn"/>
@@ -14704,10 +14703,10 @@
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+      <species metaid="M_MAM00577e" sboTerm="SBO:0000247" id="M_MAM00577e" name="2,6-dimethylheptanoyl-carnitine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C16H31NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00577e">
+            <rdf:Description rdf:about="#M_MAM00577e">
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                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dmhptcrn"/>
@@ -14721,10 +14720,10 @@
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-      <species metaid="MAM00578m" sboTerm="SBO:0000247" id="MAM00578m" name="2,6-dimethyl-trans-2-heptenoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C30H46N7O17P3S">
+      <species metaid="M_MAM00578m" sboTerm="SBO:0000247" id="M_MAM00578m" name="2,6-dimethyl-trans-2-heptenoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C30H46N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00578m">
+            <rdf:Description rdf:about="#M_MAM00578m">
               <bqbiol:is>
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                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM468808"/>
@@ -14735,10 +14734,10 @@
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-      <species metaid="MAM00580c" sboTerm="SBO:0000247" id="MAM00580c" name="20alpha-hydroxy-4-pregnen-3-one" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H32O2">
+      <species metaid="M_MAM00580c" sboTerm="SBO:0000247" id="M_MAM00580c" name="20alpha-hydroxy-4-pregnen-3-one" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H32O2">
         <annotation>
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-            <rdf:Description rdf:about="#MAM00580c">
+            <rdf:Description rdf:about="#M_MAM00580c">
               <bqbiol:is>
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@@ -14754,10 +14753,10 @@
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+      <species metaid="M_MAM00580e" sboTerm="SBO:0000247" id="M_MAM00580e" name="20alpha-hydroxy-4-pregnen-3-one" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H32O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00580e">
+            <rdf:Description rdf:about="#M_MAM00580e">
               <bqbiol:is>
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                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/aprgstrn"/>
@@ -14773,10 +14772,10 @@
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-      <species metaid="MAM00581m" sboTerm="SBO:0000247" id="MAM00581m" name="20-CoA-20-oxo-18r-hydroxy-LTB4" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C41H59N7O22P3S">
+      <species metaid="M_MAM00581m" sboTerm="SBO:0000247" id="M_MAM00581m" name="20-CoA-20-oxo-18r-hydroxy-LTB4" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C41H59N7O22P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00581m">
+            <rdf:Description rdf:about="#M_MAM00581m">
               <bqbiol:is>
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                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM35480"/>
@@ -14787,10 +14786,10 @@
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-      <species metaid="MAM00581x" sboTerm="SBO:0000247" id="MAM00581x" name="20-CoA-20-oxo-18r-hydroxy-LTB4" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C41H59N7O22P3S">
+      <species metaid="M_MAM00581x" sboTerm="SBO:0000247" id="M_MAM00581x" name="20-CoA-20-oxo-18r-hydroxy-LTB4" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C41H59N7O22P3S">
         <annotation>
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-            <rdf:Description rdf:about="#MAM00581x">
+            <rdf:Description rdf:about="#M_MAM00581x">
               <bqbiol:is>
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                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM35480"/>
@@ -14801,10 +14800,10 @@
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-      <species metaid="MAM00582c" sboTerm="SBO:0000247" id="MAM00582c" name="20-CoA-20-oxo-LTB4" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C41H59N7O21P3S">
+      <species metaid="M_MAM00582c" sboTerm="SBO:0000247" id="M_MAM00582c" name="20-CoA-20-oxo-LTB4" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C41H59N7O21P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00582c">
+            <rdf:Description rdf:about="#M_MAM00582c">
               <bqbiol:is>
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                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM35481"/>
@@ -14816,10 +14815,10 @@
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-      <species metaid="MAM00582m" sboTerm="SBO:0000247" id="MAM00582m" name="20-CoA-20-oxo-LTB4" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C41H59N7O21P3S">
+      <species metaid="M_MAM00582m" sboTerm="SBO:0000247" id="M_MAM00582m" name="20-CoA-20-oxo-LTB4" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C41H59N7O21P3S">
         <annotation>
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+            <rdf:Description rdf:about="#M_MAM00582m">
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@@ -14831,10 +14830,10 @@
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-      <species metaid="MAM00582x" sboTerm="SBO:0000247" id="MAM00582x" name="20-CoA-20-oxo-LTB4" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C41H59N7O21P3S">
+      <species metaid="M_MAM00582x" sboTerm="SBO:0000247" id="M_MAM00582x" name="20-CoA-20-oxo-LTB4" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C41H59N7O21P3S">
         <annotation>
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-            <rdf:Description rdf:about="#MAM00582x">
+            <rdf:Description rdf:about="#M_MAM00582x">
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@@ -14846,10 +14845,10 @@
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+      <species metaid="M_MAM00582r" sboTerm="SBO:0000247" id="M_MAM00582r" name="20-CoA-20-oxo-LTB4" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C41H59N7O21P3S">
         <annotation>
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-            <rdf:Description rdf:about="#MAM00582r">
+            <rdf:Description rdf:about="#M_MAM00582r">
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                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM35481"/>
@@ -14861,10 +14860,10 @@
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+      <species metaid="M_MAM00583c" sboTerm="SBO:0000247" id="M_MAM00583c" name="20-COOH-10,11-dihydro-LTB4" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C20H30O6">
         <annotation>
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-            <rdf:Description rdf:about="#MAM00583c">
+            <rdf:Description rdf:about="#M_MAM00583c">
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                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM35482"/>
@@ -14876,10 +14875,10 @@
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+      <species metaid="M_MAM00583m" sboTerm="SBO:0000247" id="M_MAM00583m" name="20-COOH-10,11-dihydro-LTB4" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C20H30O6">
         <annotation>
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-            <rdf:Description rdf:about="#MAM00583m">
+            <rdf:Description rdf:about="#M_MAM00583m">
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@@ -14891,10 +14890,10 @@
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+      <species metaid="M_MAM00583x" sboTerm="SBO:0000247" id="M_MAM00583x" name="20-COOH-10,11-dihydro-LTB4" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C20H30O6">
         <annotation>
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+            <rdf:Description rdf:about="#M_MAM00583x">
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@@ -14906,10 +14905,10 @@
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-      <species metaid="MAM00584x" sboTerm="SBO:0000247" id="MAM00584x" name="20-COOH-18-oxo-LTE4-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C44H62N8O23P3S2">
+      <species metaid="M_MAM00584x" sboTerm="SBO:0000247" id="M_MAM00584x" name="20-COOH-18-oxo-LTE4-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C44H62N8O23P3S2">
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-            <rdf:Description rdf:about="#MAM00584x">
+            <rdf:Description rdf:about="#M_MAM00584x">
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@@ -14921,10 +14920,10 @@
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+      <species metaid="M_MAM00585c" sboTerm="SBO:0000247" id="M_MAM00585c" name="20-COOH-LTB4" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C20H28O6">
         <annotation>
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-            <rdf:Description rdf:about="#MAM00585c">
+            <rdf:Description rdf:about="#M_MAM00585c">
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                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/leuktrB4wcooh"/>
@@ -14941,10 +14940,10 @@
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+      <species metaid="M_MAM00585m" sboTerm="SBO:0000247" id="M_MAM00585m" name="20-COOH-LTB4" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C20H28O6">
         <annotation>
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-            <rdf:Description rdf:about="#MAM00585m">
+            <rdf:Description rdf:about="#M_MAM00585m">
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                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/leuktrB4wcooh"/>
@@ -14961,10 +14960,10 @@
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+      <species metaid="M_MAM00585x" sboTerm="SBO:0000247" id="M_MAM00585x" name="20-COOH-LTB4" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C20H28O6">
         <annotation>
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-            <rdf:Description rdf:about="#MAM00585x">
+            <rdf:Description rdf:about="#M_MAM00585x">
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                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/leuktrB4wcooh"/>
@@ -14981,10 +14980,10 @@
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+      <species metaid="M_MAM00585r" sboTerm="SBO:0000247" id="M_MAM00585r" name="20-COOH-LTB4" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C20H28O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00585r">
+            <rdf:Description rdf:about="#M_MAM00585r">
               <bqbiol:is>
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                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/leuktrB4wcooh"/>
@@ -15001,10 +15000,10 @@
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-      <species metaid="MAM00586x" sboTerm="SBO:0000247" id="MAM00586x" name="20-COOH-LTE4" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C23H33NO7S">
+      <species metaid="M_MAM00586x" sboTerm="SBO:0000247" id="M_MAM00586x" name="20-COOH-LTE4" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C23H33NO7S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00586x">
+            <rdf:Description rdf:about="#M_MAM00586x">
               <bqbiol:is>
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                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM35483"/>
@@ -15016,10 +15015,10 @@
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+      <species metaid="M_MAM00587x" sboTerm="SBO:0000247" id="M_MAM00587x" name="20-COOH-LTE4-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C44H64N8O22P3S2">
         <annotation>
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-            <rdf:Description rdf:about="#MAM00587x">
+            <rdf:Description rdf:about="#M_MAM00587x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM47395"/>
@@ -15030,10 +15029,10 @@
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-      <species metaid="MAM00588r" sboTerm="SBO:0000247" id="MAM00588r" name="20-dihydroxy-LTB4" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O6">
+      <species metaid="M_MAM00588r" sboTerm="SBO:0000247" id="M_MAM00588r" name="20-dihydroxy-LTB4" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O6">
         <annotation>
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-            <rdf:Description rdf:about="#MAM00588r">
+            <rdf:Description rdf:about="#M_MAM00588r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM35484"/>
@@ -15045,10 +15044,10 @@
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-      <species metaid="MAM00589c" sboTerm="SBO:0000247" id="MAM00589c" name="20-hydroperoxy-H4-neuroprostane" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C22H31O6">
+      <species metaid="M_MAM00589c" sboTerm="SBO:0000247" id="M_MAM00589c" name="20-hydroperoxy-H4-neuroprostane" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C22H31O6">
         <annotation>
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-            <rdf:Description rdf:about="#MAM00589c">
+            <rdf:Description rdf:about="#M_MAM00589c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM163661"/>
@@ -15059,10 +15058,10 @@
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-      <species metaid="MAM00590c" sboTerm="SBO:0000247" id="MAM00590c" name="20-hydroxy-5S-HETE" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O4">
+      <species metaid="M_MAM00590c" sboTerm="SBO:0000247" id="M_MAM00590c" name="20-hydroxy-5S-HETE" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O4">
         <annotation>
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-            <rdf:Description rdf:about="#MAM00590c">
+            <rdf:Description rdf:about="#M_MAM00590c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM164163"/>
@@ -15073,10 +15072,10 @@
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-      <species metaid="MAM00591c" sboTerm="SBO:0000247" id="MAM00591c" name="20-hydroxy-arachidonate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O3">
+      <species metaid="M_MAM00591c" sboTerm="SBO:0000247" id="M_MAM00591c" name="20-hydroxy-arachidonate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00591c">
+            <rdf:Description rdf:about="#M_MAM00591c">
               <bqbiol:is>
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                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:34306"/>
@@ -15088,10 +15087,10 @@
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-      <species metaid="MAM00591e" sboTerm="SBO:0000247" id="MAM00591e" name="20-hydroxy-arachidonate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O3">
+      <species metaid="M_MAM00591e" sboTerm="SBO:0000247" id="M_MAM00591e" name="20-hydroxy-arachidonate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O3">
         <annotation>
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-            <rdf:Description rdf:about="#MAM00591e">
+            <rdf:Description rdf:about="#M_MAM00591e">
               <bqbiol:is>
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@@ -15103,10 +15102,10 @@
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-      <species metaid="MAM00592r" sboTerm="SBO:0000247" id="MAM00592r" name="20-hydroxycholesterol" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H46O2">
+      <species metaid="M_MAM00592r" sboTerm="SBO:0000247" id="M_MAM00592r" name="20-hydroxycholesterol" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H46O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00592r">
+            <rdf:Description rdf:about="#M_MAM00592r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/20ahchsterol"/>
@@ -15125,10 +15124,10 @@
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-      <species metaid="MAM00593c" sboTerm="SBO:0000247" id="MAM00593c" name="20-hydroxy-D4-neuroprostane" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C22H31O5">
+      <species metaid="M_MAM00593c" sboTerm="SBO:0000247" id="M_MAM00593c" name="20-hydroxy-D4-neuroprostane" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C22H31O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00593c">
+            <rdf:Description rdf:about="#M_MAM00593c">
               <bqbiol:is>
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                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM166019"/>
@@ -15139,10 +15138,10 @@
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-      <species metaid="MAM00594c" sboTerm="SBO:0000247" id="MAM00594c" name="20-hydroxy-E4-neuroprostane" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C22H31O5">
+      <species metaid="M_MAM00594c" sboTerm="SBO:0000247" id="M_MAM00594c" name="20-hydroxy-E4-neuroprostane" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C22H31O5">
         <annotation>
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-            <rdf:Description rdf:about="#MAM00594c">
+            <rdf:Description rdf:about="#M_MAM00594c">
               <bqbiol:is>
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                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM35491"/>
@@ -15154,10 +15153,10 @@
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-      <species metaid="MAM00595c" sboTerm="SBO:0000247" id="MAM00595c" name="20-hydroxy-LTB5" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H29O5">
+      <species metaid="M_MAM00595c" sboTerm="SBO:0000247" id="M_MAM00595c" name="20-hydroxy-LTB5" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H29O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00595c">
+            <rdf:Description rdf:about="#M_MAM00595c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM164164"/>
@@ -15168,10 +15167,10 @@
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+      <species metaid="M_MAM00595r" sboTerm="SBO:0000247" id="M_MAM00595r" name="20-hydroxy-LTB5" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H29O5">
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+            <rdf:Description rdf:about="#M_MAM00595r">
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@@ -15182,10 +15181,10 @@
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+      <species metaid="M_MAM00596x" sboTerm="SBO:0000247" id="M_MAM00596x" name="20-hydroxy-LTE4" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C23H36NO6S">
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+            <rdf:Description rdf:about="#M_MAM00596x">
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@@ -15199,10 +15198,10 @@
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+      <species metaid="M_MAM00597c" sboTerm="SBO:0000247" id="M_MAM00597c" name="20-OH-10,11-dihydro-LTB4" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H33O5">
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+            <rdf:Description rdf:about="#M_MAM00597c">
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@@ -15213,10 +15212,10 @@
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-      <species metaid="MAM00598c" sboTerm="SBO:0000247" id="MAM00598c" name="20-OH-hepoxilin A3" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O5">
+      <species metaid="M_MAM00598c" sboTerm="SBO:0000247" id="M_MAM00598c" name="20-OH-hepoxilin A3" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O5">
         <annotation>
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-            <rdf:Description rdf:about="#MAM00598c">
+            <rdf:Description rdf:about="#M_MAM00598c">
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                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM164165"/>
@@ -15227,10 +15226,10 @@
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+      <species metaid="M_MAM00598r" sboTerm="SBO:0000247" id="M_MAM00598r" name="20-OH-hepoxilin A3" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O5">
         <annotation>
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-            <rdf:Description rdf:about="#MAM00598r">
+            <rdf:Description rdf:about="#M_MAM00598r">
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                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM164165"/>
@@ -15241,10 +15240,10 @@
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+      <species metaid="M_MAM00599c" sboTerm="SBO:0000247" id="M_MAM00599c" name="20-OH-LTB4" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00599c">
+            <rdf:Description rdf:about="#M_MAM00599c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/leuktrB4woh"/>
@@ -15262,10 +15261,10 @@
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+      <species metaid="M_MAM00599m" sboTerm="SBO:0000247" id="M_MAM00599m" name="20-OH-LTB4" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00599m">
+            <rdf:Description rdf:about="#M_MAM00599m">
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                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/leuktrB4woh"/>
@@ -15283,10 +15282,10 @@
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+      <species metaid="M_MAM00599r" sboTerm="SBO:0000247" id="M_MAM00599r" name="20-OH-LTB4" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
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+            <rdf:Description rdf:about="#M_MAM00599r">
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                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/leuktrB4woh"/>
@@ -15304,10 +15303,10 @@
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-      <species metaid="MAM00600c" sboTerm="SBO:0000247" id="MAM00600c" name="20-oxo-LTB4" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H29O5">
+      <species metaid="M_MAM00600c" sboTerm="SBO:0000247" id="M_MAM00600c" name="20-oxo-LTB4" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H29O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00600c">
+            <rdf:Description rdf:about="#M_MAM00600c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM35503"/>
@@ -15319,10 +15318,10 @@
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-      <species metaid="MAM00600m" sboTerm="SBO:0000247" id="MAM00600m" name="20-oxo-LTB4" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H29O5">
+      <species metaid="M_MAM00600m" sboTerm="SBO:0000247" id="M_MAM00600m" name="20-oxo-LTB4" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H29O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00600m">
+            <rdf:Description rdf:about="#M_MAM00600m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM35503"/>
@@ -15334,10 +15333,10 @@
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-      <species metaid="MAM00600r" sboTerm="SBO:0000247" id="MAM00600r" name="20-oxo-LTB4" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H29O5">
+      <species metaid="M_MAM00600r" sboTerm="SBO:0000247" id="M_MAM00600r" name="20-oxo-LTB4" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H29O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00600r">
+            <rdf:Description rdf:about="#M_MAM00600r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM35503"/>
@@ -15349,10 +15348,10 @@
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-      <species metaid="MAM00601x" sboTerm="SBO:0000247" id="MAM00601x" name="20-oxo-LTE4" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C23H34NO6S">
+      <species metaid="M_MAM00601x" sboTerm="SBO:0000247" id="M_MAM00601x" name="20-oxo-LTE4" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C23H34NO6S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00601x">
+            <rdf:Description rdf:about="#M_MAM00601x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM35502"/>
@@ -15364,10 +15363,10 @@
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-      <species metaid="MAM00602c" sboTerm="SBO:0000247" id="MAM00602c" name="20-trihydroxy-LTB4" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O7">
+      <species metaid="M_MAM00602c" sboTerm="SBO:0000247" id="M_MAM00602c" name="20-trihydroxy-LTB4" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O7">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00602c">
+            <rdf:Description rdf:about="#M_MAM00602c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM35505"/>
@@ -15379,10 +15378,10 @@
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-      <species metaid="MAM00602r" sboTerm="SBO:0000247" id="MAM00602r" name="20-trihydroxy-LTB4" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O7">
+      <species metaid="M_MAM00602r" sboTerm="SBO:0000247" id="M_MAM00602r" name="20-trihydroxy-LTB4" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O7">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00602r">
+            <rdf:Description rdf:about="#M_MAM00602r">
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                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM35505"/>
@@ -15394,10 +15393,10 @@
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-      <species metaid="MAM00604c" sboTerm="SBO:0000247" id="MAM00604c" name="21-hydroxyallopregnanolone" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H34O3">
+      <species metaid="M_MAM00604c" sboTerm="SBO:0000247" id="M_MAM00604c" name="21-hydroxyallopregnanolone" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H34O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00604c">
+            <rdf:Description rdf:about="#M_MAM00604c">
               <bqbiol:is>
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                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:805752"/>
@@ -15413,10 +15412,10 @@
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-      <species metaid="MAM00605c" sboTerm="SBO:0000247" id="MAM00605c" name="21-hydroxypregnenolone" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H32O3">
+      <species metaid="M_MAM00605c" sboTerm="SBO:0000247" id="M_MAM00605c" name="21-hydroxypregnenolone" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H32O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00605c">
+            <rdf:Description rdf:about="#M_MAM00605c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/21hprgnlone"/>
@@ -15433,10 +15432,10 @@
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-      <species metaid="MAM00606m" sboTerm="SBO:0000247" id="MAM00606m" name="22beta-hydroxycholesterol" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H46O2">
+      <species metaid="M_MAM00606m" sboTerm="SBO:0000247" id="M_MAM00606m" name="22beta-hydroxycholesterol" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H46O2">
         <annotation>
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-            <rdf:Description rdf:about="#MAM00606m">
+            <rdf:Description rdf:about="#M_MAM00606m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:1301"/>
@@ -15452,10 +15451,10 @@
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+      <species metaid="M_MAM00607c" sboTerm="SBO:0000247" id="M_MAM00607c" name="23S,25,26-trihydroxyvitamin D3" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H44O4">
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+            <rdf:Description rdf:about="#M_MAM00607c">
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@@ -15467,10 +15466,10 @@
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+      <species metaid="M_MAM00607m" sboTerm="SBO:0000247" id="M_MAM00607m" name="23S,25,26-trihydroxyvitamin D3" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H44O4">
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-            <rdf:Description rdf:about="#MAM00607m">
+            <rdf:Description rdf:about="#M_MAM00607m">
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@@ -15482,10 +15481,10 @@
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+      <species metaid="M_MAM00608c" sboTerm="SBO:0000247" id="M_MAM00608c" name="23s,25-dihydroxyvitamin D3" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H44O3">
         <annotation>
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-            <rdf:Description rdf:about="#MAM00608c">
+            <rdf:Description rdf:about="#M_MAM00608c">
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@@ -15499,10 +15498,10 @@
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+      <species metaid="M_MAM00608m" sboTerm="SBO:0000247" id="M_MAM00608m" name="23s,25-dihydroxyvitamin D3" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H44O3">
         <annotation>
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-            <rdf:Description rdf:about="#MAM00608m">
+            <rdf:Description rdf:about="#M_MAM00608m">
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@@ -15516,10 +15515,10 @@
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-      <species metaid="MAM00609c" sboTerm="SBO:0000247" id="MAM00609c" name="24,25-dihydrolanosterol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C30H52O">
+      <species metaid="M_MAM00609c" sboTerm="SBO:0000247" id="M_MAM00609c" name="24,25-dihydrolanosterol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C30H52O">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00609c">
+            <rdf:Description rdf:about="#M_MAM00609c">
               <bqbiol:is>
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                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:28113"/>
@@ -15535,10 +15534,10 @@
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-      <species metaid="MAM00610c" sboTerm="SBO:0000247" id="MAM00610c" name="24-hydroxycholesterol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H46O2">
+      <species metaid="M_MAM00610c" sboTerm="SBO:0000247" id="M_MAM00610c" name="24-hydroxycholesterol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H46O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00610c">
+            <rdf:Description rdf:about="#M_MAM00610c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/xol24oh"/>
@@ -15557,10 +15556,10 @@
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-      <species metaid="MAM00611c" sboTerm="SBO:0000247" id="MAM00611c" name="24-oxo-1alpha,23,25-trihydroxyvitamin D3" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H42O5">
+      <species metaid="M_MAM00611c" sboTerm="SBO:0000247" id="M_MAM00611c" name="24-oxo-1alpha,23,25-trihydroxyvitamin D3" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H42O5">
         <annotation>
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-            <rdf:Description rdf:about="#MAM00611c">
+            <rdf:Description rdf:about="#M_MAM00611c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM6501"/>
@@ -15572,10 +15571,10 @@
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-      <species metaid="MAM00611m" sboTerm="SBO:0000247" id="MAM00611m" name="24-oxo-1alpha,23,25-trihydroxyvitamin D3" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H42O5">
+      <species metaid="M_MAM00611m" sboTerm="SBO:0000247" id="M_MAM00611m" name="24-oxo-1alpha,23,25-trihydroxyvitamin D3" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H42O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00611m">
+            <rdf:Description rdf:about="#M_MAM00611m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM6501"/>
@@ -15587,10 +15586,10 @@
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-      <species metaid="MAM00612c" sboTerm="SBO:0000247" id="MAM00612c" name="24-oxo-1alpha,25-dihydroxyvitamin D3" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H42O4">
+      <species metaid="M_MAM00612c" sboTerm="SBO:0000247" id="M_MAM00612c" name="24-oxo-1alpha,25-dihydroxyvitamin D3" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H42O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00612c">
+            <rdf:Description rdf:about="#M_MAM00612c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM4159"/>
@@ -15602,10 +15601,10 @@
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-      <species metaid="MAM00612m" sboTerm="SBO:0000247" id="MAM00612m" name="24-oxo-1alpha,25-dihydroxyvitamin D3" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H42O4">
+      <species metaid="M_MAM00612m" sboTerm="SBO:0000247" id="M_MAM00612m" name="24-oxo-1alpha,25-dihydroxyvitamin D3" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H42O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00612m">
+            <rdf:Description rdf:about="#M_MAM00612m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM4159"/>
@@ -15617,10 +15616,10 @@
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-      <species metaid="MAM00613c" sboTerm="SBO:0000247" id="MAM00613c" name="24R,25-dihyoxyvitamin D2" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C28H44O3">
+      <species metaid="M_MAM00613c" sboTerm="SBO:0000247" id="M_MAM00613c" name="24R,25-dihyoxyvitamin D2" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C28H44O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00613c">
+            <rdf:Description rdf:about="#M_MAM00613c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/2425dhvitd2"/>
@@ -15632,10 +15631,10 @@
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         </annotation>
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-      <species metaid="MAM00613m" sboTerm="SBO:0000247" id="MAM00613m" name="24R,25-dihyoxyvitamin D2" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C28H44O3">
+      <species metaid="M_MAM00613m" sboTerm="SBO:0000247" id="M_MAM00613m" name="24R,25-dihyoxyvitamin D2" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C28H44O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00613m">
+            <rdf:Description rdf:about="#M_MAM00613m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/2425dhvitd2"/>
@@ -15647,10 +15646,10 @@
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         </annotation>
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-      <species metaid="MAM00613e" sboTerm="SBO:0000247" id="MAM00613e" name="24R,25-dihyoxyvitamin D2" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C28H44O3">
+      <species metaid="M_MAM00613e" sboTerm="SBO:0000247" id="M_MAM00613e" name="24R,25-dihyoxyvitamin D2" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C28H44O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00613e">
+            <rdf:Description rdf:about="#M_MAM00613e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/2425dhvitd2"/>
@@ -15662,10 +15661,10 @@
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         </annotation>
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-      <species metaid="MAM00614c" sboTerm="SBO:0000247" id="MAM00614c" name="25(R)DHCA-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C48H76N7O19P3S">
+      <species metaid="M_MAM00614c" sboTerm="SBO:0000247" id="M_MAM00614c" name="25(R)DHCA-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C48H76N7O19P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00614c">
+            <rdf:Description rdf:about="#M_MAM00614c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dhcholestancoa"/>
@@ -15683,10 +15682,10 @@
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-      <species metaid="MAM00614x" sboTerm="SBO:0000247" id="MAM00614x" name="25(R)DHCA-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C48H76N7O19P3S">
+      <species metaid="M_MAM00614x" sboTerm="SBO:0000247" id="M_MAM00614x" name="25(R)DHCA-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C48H76N7O19P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00614x">
+            <rdf:Description rdf:about="#M_MAM00614x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dhcholestancoa"/>
@@ -15704,10 +15703,10 @@
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-      <species metaid="MAM00614r" sboTerm="SBO:0000247" id="MAM00614r" name="25(R)DHCA-CoA" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C48H76N7O19P3S">
+      <species metaid="M_MAM00614r" sboTerm="SBO:0000247" id="M_MAM00614r" name="25(R)DHCA-CoA" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C48H76N7O19P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00614r">
+            <rdf:Description rdf:about="#M_MAM00614r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dhcholestancoa"/>
@@ -15725,10 +15724,10 @@
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-      <species metaid="MAM00615c" sboTerm="SBO:0000247" id="MAM00615c" name="25(R)TetraHCA-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C48H76N7O21P3S">
+      <species metaid="M_MAM00615c" sboTerm="SBO:0000247" id="M_MAM00615c" name="25(R)TetraHCA-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C48H76N7O21P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00615c">
+            <rdf:Description rdf:about="#M_MAM00615c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM827"/>
@@ -15739,10 +15738,10 @@
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         </annotation>
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-      <species metaid="MAM00615x" sboTerm="SBO:0000247" id="MAM00615x" name="25(R)TetraHCA-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C48H76N7O21P3S">
+      <species metaid="M_MAM00615x" sboTerm="SBO:0000247" id="M_MAM00615x" name="25(R)TetraHCA-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C48H76N7O21P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00615x">
+            <rdf:Description rdf:about="#M_MAM00615x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM827"/>
@@ -15753,10 +15752,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00616c" sboTerm="SBO:0000247" id="MAM00616c" name="25(R)THCA-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C48H76N7O20P3S">
+      <species metaid="M_MAM00616c" sboTerm="SBO:0000247" id="M_MAM00616c" name="25(R)THCA-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C48H76N7O20P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00616c">
+            <rdf:Description rdf:about="#M_MAM00616c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/cholcoar"/>
@@ -15774,10 +15773,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00616m" sboTerm="SBO:0000247" id="MAM00616m" name="25(R)THCA-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C48H76N7O20P3S">
+      <species metaid="M_MAM00616m" sboTerm="SBO:0000247" id="M_MAM00616m" name="25(R)THCA-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C48H76N7O20P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00616m">
+            <rdf:Description rdf:about="#M_MAM00616m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/cholcoar"/>
@@ -15795,10 +15794,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00616x" sboTerm="SBO:0000247" id="MAM00616x" name="25(R)THCA-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C48H76N7O20P3S">
+      <species metaid="M_MAM00616x" sboTerm="SBO:0000247" id="M_MAM00616x" name="25(R)THCA-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C48H76N7O20P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00616x">
+            <rdf:Description rdf:about="#M_MAM00616x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/cholcoar"/>
@@ -15816,10 +15815,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00616r" sboTerm="SBO:0000247" id="MAM00616r" name="25(R)THCA-CoA" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C48H76N7O20P3S">
+      <species metaid="M_MAM00616r" sboTerm="SBO:0000247" id="M_MAM00616r" name="25(R)THCA-CoA" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C48H76N7O20P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00616r">
+            <rdf:Description rdf:about="#M_MAM00616r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/cholcoar"/>
@@ -15837,10 +15836,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00617x" sboTerm="SBO:0000247" id="MAM00617x" name="25(S)DHCA-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C48H76N7O19P3S">
+      <species metaid="M_MAM00617x" sboTerm="SBO:0000247" id="M_MAM00617x" name="25(S)DHCA-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C48H76N7O19P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00617x">
+            <rdf:Description rdf:about="#M_MAM00617x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C17346"/>
@@ -15852,10 +15851,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00618m" sboTerm="SBO:0000247" id="MAM00618m" name="25(S)THCA-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C48H76N7O20P3S">
+      <species metaid="M_MAM00618m" sboTerm="SBO:0000247" id="M_MAM00618m" name="25(S)THCA-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C48H76N7O20P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00618m">
+            <rdf:Description rdf:about="#M_MAM00618m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/cholcoas"/>
@@ -15872,10 +15871,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00618x" sboTerm="SBO:0000247" id="MAM00618x" name="25(S)THCA-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C48H76N7O20P3S">
+      <species metaid="M_MAM00618x" sboTerm="SBO:0000247" id="M_MAM00618x" name="25(S)THCA-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C48H76N7O20P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00618x">
+            <rdf:Description rdf:about="#M_MAM00618x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/cholcoas"/>
@@ -15892,10 +15891,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00619r" sboTerm="SBO:0000247" id="MAM00619r" name="25-hydroxycholesterol" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H46O2">
+      <species metaid="M_MAM00619r" sboTerm="SBO:0000247" id="M_MAM00619r" name="25-hydroxycholesterol" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H46O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00619r">
+            <rdf:Description rdf:about="#M_MAM00619r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/xol25oh"/>
@@ -15910,10 +15909,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00620c" sboTerm="SBO:0000247" id="MAM00620c" name="25-hydroxyvitamin D2" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C28H44O2">
+      <species metaid="M_MAM00620c" sboTerm="SBO:0000247" id="M_MAM00620c" name="25-hydroxyvitamin D2" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C28H44O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00620c">
+            <rdf:Description rdf:about="#M_MAM00620c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/25hvitd2"/>
@@ -15927,10 +15926,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00620m" sboTerm="SBO:0000247" id="MAM00620m" name="25-hydroxyvitamin D2" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C28H44O2">
+      <species metaid="M_MAM00620m" sboTerm="SBO:0000247" id="M_MAM00620m" name="25-hydroxyvitamin D2" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C28H44O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00620m">
+            <rdf:Description rdf:about="#M_MAM00620m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/25hvitd2"/>
@@ -15944,10 +15943,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00620e" sboTerm="SBO:0000247" id="MAM00620e" name="25-hydroxyvitamin D2" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C28H44O2">
+      <species metaid="M_MAM00620e" sboTerm="SBO:0000247" id="M_MAM00620e" name="25-hydroxyvitamin D2" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C28H44O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00620e">
+            <rdf:Description rdf:about="#M_MAM00620e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/25hvitd2"/>
@@ -15961,10 +15960,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00621c" sboTerm="SBO:0000247" id="MAM00621c" name="25-hydroxyvitamin D3-26,23-lactol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H42O4">
+      <species metaid="M_MAM00621c" sboTerm="SBO:0000247" id="M_MAM00621c" name="25-hydroxyvitamin D3-26,23-lactol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H42O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00621c">
+            <rdf:Description rdf:about="#M_MAM00621c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM150729"/>
@@ -15975,10 +15974,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00621m" sboTerm="SBO:0000247" id="MAM00621m" name="25-hydroxyvitamin D3-26,23-lactol" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H42O4">
+      <species metaid="M_MAM00621m" sboTerm="SBO:0000247" id="M_MAM00621m" name="25-hydroxyvitamin D3-26,23-lactol" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H42O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00621m">
+            <rdf:Description rdf:about="#M_MAM00621m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM150729"/>
@@ -15989,10 +15988,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00622c" sboTerm="SBO:0000247" id="MAM00622c" name="25-hydroxyvitamin D3-26,23-lactone" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H40O4">
+      <species metaid="M_MAM00622c" sboTerm="SBO:0000247" id="M_MAM00622c" name="25-hydroxyvitamin D3-26,23-lactone" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H40O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00622c">
+            <rdf:Description rdf:about="#M_MAM00622c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM150730"/>
@@ -16003,10 +16002,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00622m" sboTerm="SBO:0000247" id="MAM00622m" name="25-hydroxyvitamin D3-26,23-lactone" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H40O4">
+      <species metaid="M_MAM00622m" sboTerm="SBO:0000247" id="M_MAM00622m" name="25-hydroxyvitamin D3-26,23-lactone" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H40O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00622m">
+            <rdf:Description rdf:about="#M_MAM00622m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM150730"/>
@@ -16017,10 +16016,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00623c" sboTerm="SBO:0000247" id="MAM00623c" name="26-hydroxycholesterol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H46O2">
+      <species metaid="M_MAM00623c" sboTerm="SBO:0000247" id="M_MAM00623c" name="26-hydroxycholesterol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H46O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00623c">
+            <rdf:Description rdf:about="#M_MAM00623c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/xol27oh"/>
@@ -16039,10 +16038,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00623m" sboTerm="SBO:0000247" id="MAM00623m" name="26-hydroxycholesterol" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H46O2">
+      <species metaid="M_MAM00623m" sboTerm="SBO:0000247" id="M_MAM00623m" name="26-hydroxycholesterol" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H46O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00623m">
+            <rdf:Description rdf:about="#M_MAM00623m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/xol27oh"/>
@@ -16061,10 +16060,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00623r" sboTerm="SBO:0000247" id="MAM00623r" name="26-hydroxycholesterol" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H46O2">
+      <species metaid="M_MAM00623r" sboTerm="SBO:0000247" id="M_MAM00623r" name="26-hydroxycholesterol" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H46O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00623r">
+            <rdf:Description rdf:about="#M_MAM00623r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/xol27oh"/>
@@ -16083,10 +16082,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00624c" sboTerm="SBO:0000247" id="MAM00624c" name="27alpha-hydroxy-7-dehydrocholesterol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H44O2">
+      <species metaid="M_MAM00624c" sboTerm="SBO:0000247" id="M_MAM00624c" name="27alpha-hydroxy-7-dehydrocholesterol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H44O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00624c">
+            <rdf:Description rdf:about="#M_MAM00624c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM166031"/>
@@ -16097,10 +16096,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00625c" sboTerm="SBO:0000247" id="MAM00625c" name="27-hydroxycholesterol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H46O2">
+      <species metaid="M_MAM00625c" sboTerm="SBO:0000247" id="M_MAM00625c" name="27-hydroxycholesterol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H46O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00625c">
+            <rdf:Description rdf:about="#M_MAM00625c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/LMST01010147"/>
@@ -16112,10 +16111,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00625m" sboTerm="SBO:0000247" id="MAM00625m" name="27-hydroxycholesterol" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H46O2">
+      <species metaid="M_MAM00625m" sboTerm="SBO:0000247" id="M_MAM00625m" name="27-hydroxycholesterol" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H46O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00625m">
+            <rdf:Description rdf:about="#M_MAM00625m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/LMST01010147"/>
@@ -16127,10 +16126,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00626c" sboTerm="SBO:0000247" id="MAM00626c" name="2-acetyl-1-alkyl-sn-glycero-3-phosphocholine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H21NO7PR">
+      <species metaid="M_MAM00626c" sboTerm="SBO:0000247" id="M_MAM00626c" name="2-acetyl-1-alkyl-sn-glycero-3-phosphocholine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H21NO7PR">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00626c">
+            <rdf:Description rdf:about="#M_MAM00626c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/paf_hs"/>
@@ -16144,10 +16143,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00626e" sboTerm="SBO:0000247" id="MAM00626e" name="2-acetyl-1-alkyl-sn-glycero-3-phosphocholine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H21NO7PR">
+      <species metaid="M_MAM00626e" sboTerm="SBO:0000247" id="M_MAM00626e" name="2-acetyl-1-alkyl-sn-glycero-3-phosphocholine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H21NO7PR">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00626e">
+            <rdf:Description rdf:about="#M_MAM00626e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/paf_hs"/>
@@ -16161,10 +16160,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00627c" sboTerm="SBO:0000247" id="MAM00627c" name="2-acyl-1-(1-alkenyl)-sn-glycero-3-phosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H7O7PR2">
+      <species metaid="M_MAM00627c" sboTerm="SBO:0000247" id="M_MAM00627c" name="2-acyl-1-(1-alkenyl)-sn-glycero-3-phosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H7O7PR2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00627c">
+            <rdf:Description rdf:about="#M_MAM00627c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C15647"/>
@@ -16176,10 +16175,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00628c" sboTerm="SBO:0000247" id="MAM00628c" name="2-acyl-1-alkyl-sn-glycero-3-phosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C4H5O7PR2">
+      <species metaid="M_MAM00628c" sboTerm="SBO:0000247" id="M_MAM00628c" name="2-acyl-1-alkyl-sn-glycero-3-phosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C4H5O7PR2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00628c">
+            <rdf:Description rdf:about="#M_MAM00628c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ak2gp_hs"/>
@@ -16192,10 +16191,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00629c" sboTerm="SBO:0000247" id="MAM00629c" name="2-amino-3-carboxymuconate semialdehyde" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C7H6NO5">
+      <species metaid="M_MAM00629c" sboTerm="SBO:0000247" id="M_MAM00629c" name="2-amino-3-carboxymuconate semialdehyde" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C7H6NO5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00629c">
+            <rdf:Description rdf:about="#M_MAM00629c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/cmusa"/>
@@ -16210,10 +16209,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00630m" sboTerm="SBO:0000247" id="MAM00630m" name="2-amino-3-oxoadipate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H8NO5">
+      <species metaid="M_MAM00630m" sboTerm="SBO:0000247" id="M_MAM00630m" name="2-amino-3-oxoadipate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H8NO5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00630m">
+            <rdf:Description rdf:about="#M_MAM00630m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C05520"/>
@@ -16226,10 +16225,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00631c" sboTerm="SBO:0000247" id="MAM00631c" name="2-aminoadipate 6-semialdehyde" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H11NO3">
+      <species metaid="M_MAM00631c" sboTerm="SBO:0000247" id="M_MAM00631c" name="2-aminoadipate 6-semialdehyde" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H11NO3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00631c">
+            <rdf:Description rdf:about="#M_MAM00631c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/L2aadp6sa"/>
@@ -16245,10 +16244,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00631m" sboTerm="SBO:0000247" id="MAM00631m" name="2-aminoadipate 6-semialdehyde" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H11NO3">
+      <species metaid="M_MAM00631m" sboTerm="SBO:0000247" id="M_MAM00631m" name="2-aminoadipate 6-semialdehyde" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H11NO3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00631m">
+            <rdf:Description rdf:about="#M_MAM00631m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/L2aadp6sa"/>
@@ -16264,10 +16263,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00632c" sboTerm="SBO:0000247" id="MAM00632c" name="2-aminoethylphosphonate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C2H7NO3P">
+      <species metaid="M_MAM00632c" sboTerm="SBO:0000247" id="M_MAM00632c" name="2-aminoethylphosphonate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C2H7NO3P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00632c">
+            <rdf:Description rdf:about="#M_MAM00632c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/2ameph"/>
@@ -16283,10 +16282,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00633c" sboTerm="SBO:0000247" id="MAM00633c" name="2-aminomuconate semialdehyde" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H7NO3">
+      <species metaid="M_MAM00633c" sboTerm="SBO:0000247" id="M_MAM00633c" name="2-aminomuconate semialdehyde" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H7NO3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00633c">
+            <rdf:Description rdf:about="#M_MAM00633c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/am6sa"/>
@@ -16303,10 +16302,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00634c" sboTerm="SBO:0000247" id="MAM00634c" name="2-aminomuconate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H6NO4">
+      <species metaid="M_MAM00634c" sboTerm="SBO:0000247" id="M_MAM00634c" name="2-aminomuconate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H6NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00634c">
+            <rdf:Description rdf:about="#M_MAM00634c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/amuco"/>
@@ -16320,10 +16319,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00635c" sboTerm="SBO:0000247" id="MAM00635c" name="2-arachidonoylglycerol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H38O4">
+      <species metaid="M_MAM00635c" sboTerm="SBO:0000247" id="M_MAM00635c" name="2-arachidonoylglycerol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H38O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00635c">
+            <rdf:Description rdf:about="#M_MAM00635c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:52392"/>
@@ -16340,10 +16339,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00636c" sboTerm="SBO:0000247" id="MAM00636c" name="2-bromoacetaldehyde" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C2H3BrO">
+      <species metaid="M_MAM00636c" sboTerm="SBO:0000247" id="M_MAM00636c" name="2-bromoacetaldehyde" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C2H3BrO">
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+            <rdf:Description rdf:about="#M_MAM00636c">
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@@ -16355,10 +16354,10 @@
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+      <species metaid="M_MAM00637c" sboTerm="SBO:0000247" id="M_MAM00637c" name="2-bromophenol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H5BrO">
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+            <rdf:Description rdf:about="#M_MAM00637c">
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@@ -16370,10 +16369,10 @@
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+      <species metaid="M_MAM00638c" sboTerm="SBO:0000247" id="M_MAM00638c" name="2-carboxy-2,3-dihydro-5,6-dihydroxyindole" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C9H8NO4">
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-            <rdf:Description rdf:about="#MAM00638c">
+            <rdf:Description rdf:about="#M_MAM00638c">
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                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/2c23dh56dhoxin"/>
@@ -16390,10 +16389,10 @@
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-      <species metaid="MAM00639c" sboTerm="SBO:0000247" id="MAM00639c" name="2-deoxy-D-ribose-1-phosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C5H9O7P">
+      <species metaid="M_MAM00639c" sboTerm="SBO:0000247" id="M_MAM00639c" name="2-deoxy-D-ribose-1-phosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C5H9O7P">
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-            <rdf:Description rdf:about="#MAM00639c">
+            <rdf:Description rdf:about="#M_MAM00639c">
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@@ -16408,10 +16407,10 @@
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-      <species metaid="MAM00640c" sboTerm="SBO:0000247" id="MAM00640c" name="2-deoxy-D-ribose-5-phosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C5H9O7P">
+      <species metaid="M_MAM00640c" sboTerm="SBO:0000247" id="M_MAM00640c" name="2-deoxy-D-ribose-5-phosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C5H9O7P">
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-            <rdf:Description rdf:about="#MAM00640c">
+            <rdf:Description rdf:about="#M_MAM00640c">
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@@ -16426,10 +16425,10 @@
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-      <species metaid="MAM00641c" sboTerm="SBO:0000247" id="MAM00641c" name="2-hydroxy-17beta-estradiol-1-S-glutathione" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C28H38N3O9S">
+      <species metaid="M_MAM00641c" sboTerm="SBO:0000247" id="M_MAM00641c" name="2-hydroxy-17beta-estradiol-1-S-glutathione" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C28H38N3O9S">
         <annotation>
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+            <rdf:Description rdf:about="#M_MAM00641c">
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                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM163147"/>
@@ -16440,10 +16439,10 @@
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+      <species metaid="M_MAM00641m" sboTerm="SBO:0000247" id="M_MAM00641m" name="2-hydroxy-17beta-estradiol-1-S-glutathione" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C28H38N3O9S">
         <annotation>
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+            <rdf:Description rdf:about="#M_MAM00641m">
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                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM163147"/>
@@ -16454,10 +16453,10 @@
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+      <species metaid="M_MAM00641x" sboTerm="SBO:0000247" id="M_MAM00641x" name="2-hydroxy-17beta-estradiol-1-S-glutathione" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C28H38N3O9S">
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+            <rdf:Description rdf:about="#M_MAM00641x">
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                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM163147"/>
@@ -16468,10 +16467,10 @@
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+      <species metaid="M_MAM00641r" sboTerm="SBO:0000247" id="M_MAM00641r" name="2-hydroxy-17beta-estradiol-1-S-glutathione" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C28H38N3O9S">
         <annotation>
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+            <rdf:Description rdf:about="#M_MAM00641r">
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                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM163147"/>
@@ -16482,10 +16481,10 @@
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+      <species metaid="M_MAM00642c" sboTerm="SBO:0000247" id="M_MAM00642c" name="2-hydroxy-17beta-estradiol-4-S-glutathione" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C28H38N3O9S">
         <annotation>
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-            <rdf:Description rdf:about="#MAM00642c">
+            <rdf:Description rdf:about="#M_MAM00642c">
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                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM163148"/>
@@ -16496,10 +16495,10 @@
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+      <species metaid="M_MAM00642m" sboTerm="SBO:0000247" id="M_MAM00642m" name="2-hydroxy-17beta-estradiol-4-S-glutathione" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C28H38N3O9S">
         <annotation>
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-            <rdf:Description rdf:about="#MAM00642m">
+            <rdf:Description rdf:about="#M_MAM00642m">
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                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM163148"/>
@@ -16510,10 +16509,10 @@
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-      <species metaid="MAM00642x" sboTerm="SBO:0000247" id="MAM00642x" name="2-hydroxy-17beta-estradiol-4-S-glutathione" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C28H38N3O9S">
+      <species metaid="M_MAM00642x" sboTerm="SBO:0000247" id="M_MAM00642x" name="2-hydroxy-17beta-estradiol-4-S-glutathione" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C28H38N3O9S">
         <annotation>
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-            <rdf:Description rdf:about="#MAM00642x">
+            <rdf:Description rdf:about="#M_MAM00642x">
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                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM163148"/>
@@ -16524,10 +16523,10 @@
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-      <species metaid="MAM00642r" sboTerm="SBO:0000247" id="MAM00642r" name="2-hydroxy-17beta-estradiol-4-S-glutathione" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C28H38N3O9S">
+      <species metaid="M_MAM00642r" sboTerm="SBO:0000247" id="M_MAM00642r" name="2-hydroxy-17beta-estradiol-4-S-glutathione" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C28H38N3O9S">
         <annotation>
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-            <rdf:Description rdf:about="#MAM00642r">
+            <rdf:Description rdf:about="#M_MAM00642r">
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@@ -16538,10 +16537,10 @@
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+      <species metaid="M_MAM00644c" sboTerm="SBO:0000247" id="M_MAM00644c" name="2-hydroxy-3-methoxy-17beta-estradiol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H26O3">
         <annotation>
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-            <rdf:Description rdf:about="#MAM00644c">
+            <rdf:Description rdf:about="#M_MAM00644c">
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                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM165923"/>
@@ -16552,10 +16551,10 @@
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-      <species metaid="MAM00645c" sboTerm="SBO:0000247" id="MAM00645c" name="2-hydroxy-3-methoxyestrone" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H24O3">
+      <species metaid="M_MAM00645c" sboTerm="SBO:0000247" id="M_MAM00645c" name="2-hydroxy-3-methoxyestrone" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H24O3">
         <annotation>
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+            <rdf:Description rdf:about="#M_MAM00645c">
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@@ -16568,10 +16567,10 @@
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-      <species metaid="MAM00646c" sboTerm="SBO:0000247" id="MAM00646c" name="2-hydroxy-3-oxopropanoate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C3H3O4">
+      <species metaid="M_MAM00646c" sboTerm="SBO:0000247" id="M_MAM00646c" name="2-hydroxy-3-oxopropanoate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C3H3O4">
         <annotation>
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-            <rdf:Description rdf:about="#MAM00646c">
+            <rdf:Description rdf:about="#M_MAM00646c">
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@@ -16584,10 +16583,10 @@
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+      <species metaid="M_MAM00648c" sboTerm="SBO:0000247" id="M_MAM00648c" name="2-hydroxybutyrate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C4H7O3">
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+            <rdf:Description rdf:about="#M_MAM00648c">
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@@ -16603,10 +16602,10 @@
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+      <species metaid="M_MAM00648e" sboTerm="SBO:0000247" id="M_MAM00648e" name="2-hydroxybutyrate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C4H7O3">
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+            <rdf:Description rdf:about="#M_MAM00648e">
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@@ -16622,10 +16621,10 @@
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+      <species metaid="M_MAM00649c" sboTerm="SBO:0000247" id="M_MAM00649c" name="2-hydroxyestradiol-17beta" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H24O3">
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+            <rdf:Description rdf:about="#M_MAM00649c">
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@@ -16642,10 +16641,10 @@
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+      <species metaid="M_MAM00649l" sboTerm="SBO:0000247" id="M_MAM00649l" name="2-hydroxyestradiol-17beta" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H24O3">
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+            <rdf:Description rdf:about="#M_MAM00649l">
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@@ -16662,10 +16661,10 @@
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+      <species metaid="M_MAM00649r" sboTerm="SBO:0000247" id="M_MAM00649r" name="2-hydroxyestradiol-17beta" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H24O3">
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+            <rdf:Description rdf:about="#M_MAM00649r">
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@@ -16682,10 +16681,10 @@
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+      <species metaid="M_MAM00650c" sboTerm="SBO:0000247" id="M_MAM00650c" name="2-hydroxyestrone" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H22O3">
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-            <rdf:Description rdf:about="#MAM00650c">
+            <rdf:Description rdf:about="#M_MAM00650c">
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@@ -16702,10 +16701,10 @@
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+      <species metaid="M_MAM00650l" sboTerm="SBO:0000247" id="M_MAM00650l" name="2-hydroxyestrone" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H22O3">
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-            <rdf:Description rdf:about="#MAM00650l">
+            <rdf:Description rdf:about="#M_MAM00650l">
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@@ -16722,10 +16721,10 @@
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+      <species metaid="M_MAM00650r" sboTerm="SBO:0000247" id="M_MAM00650r" name="2-hydroxyestrone" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H22O3">
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+            <rdf:Description rdf:about="#M_MAM00650r">
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@@ -16742,10 +16741,10 @@
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+      <species metaid="M_MAM00651c" sboTerm="SBO:0000247" id="M_MAM00651c" name="2-hydroxyestrone-1-S-glutathione" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C28H36N3O9S">
         <annotation>
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+            <rdf:Description rdf:about="#M_MAM00651c">
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@@ -16757,10 +16756,10 @@
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+      <species metaid="M_MAM00651m" sboTerm="SBO:0000247" id="M_MAM00651m" name="2-hydroxyestrone-1-S-glutathione" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C28H36N3O9S">
         <annotation>
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-            <rdf:Description rdf:about="#MAM00651m">
+            <rdf:Description rdf:about="#M_MAM00651m">
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@@ -16772,10 +16771,10 @@
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+      <species metaid="M_MAM00651x" sboTerm="SBO:0000247" id="M_MAM00651x" name="2-hydroxyestrone-1-S-glutathione" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C28H36N3O9S">
         <annotation>
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-            <rdf:Description rdf:about="#MAM00651x">
+            <rdf:Description rdf:about="#M_MAM00651x">
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                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM35158"/>
@@ -16787,10 +16786,10 @@
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+      <species metaid="M_MAM00651r" sboTerm="SBO:0000247" id="M_MAM00651r" name="2-hydroxyestrone-1-S-glutathione" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C28H36N3O9S">
         <annotation>
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-            <rdf:Description rdf:about="#MAM00651r">
+            <rdf:Description rdf:about="#M_MAM00651r">
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                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM35158"/>
@@ -16802,10 +16801,10 @@
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+      <species metaid="M_MAM00652c" sboTerm="SBO:0000247" id="M_MAM00652c" name="2-hydroxyestrone-4-S-glutathione" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C28H36N3O9S">
         <annotation>
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-            <rdf:Description rdf:about="#MAM00652c">
+            <rdf:Description rdf:about="#M_MAM00652c">
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@@ -16817,10 +16816,10 @@
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+      <species metaid="M_MAM00652m" sboTerm="SBO:0000247" id="M_MAM00652m" name="2-hydroxyestrone-4-S-glutathione" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C28H36N3O9S">
         <annotation>
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-            <rdf:Description rdf:about="#MAM00652m">
+            <rdf:Description rdf:about="#M_MAM00652m">
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@@ -16832,10 +16831,10 @@
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+      <species metaid="M_MAM00652x" sboTerm="SBO:0000247" id="M_MAM00652x" name="2-hydroxyestrone-4-S-glutathione" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C28H36N3O9S">
         <annotation>
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+            <rdf:Description rdf:about="#M_MAM00652x">
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@@ -16847,10 +16846,10 @@
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+      <species metaid="M_MAM00652r" sboTerm="SBO:0000247" id="M_MAM00652r" name="2-hydroxyestrone-4-S-glutathione" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C28H36N3O9S">
         <annotation>
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+            <rdf:Description rdf:about="#M_MAM00652r">
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@@ -16862,10 +16861,10 @@
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+      <species metaid="M_MAM00653c" sboTerm="SBO:0000247" id="M_MAM00653c" name="2-hydroxyglutarate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C5H6O5">
         <annotation>
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+            <rdf:Description rdf:about="#M_MAM00653c">
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@@ -16878,10 +16877,10 @@
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-      <species metaid="MAM00654c" sboTerm="SBO:0000247" id="MAM00654c" name="2-hydroxyphenylacetate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C8H7O3">
+      <species metaid="M_MAM00654c" sboTerm="SBO:0000247" id="M_MAM00654c" name="2-hydroxyphenylacetate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C8H7O3">
         <annotation>
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+            <rdf:Description rdf:about="#M_MAM00654c">
               <bqbiol:is>
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@@ -16897,10 +16896,10 @@
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-      <species metaid="MAM00655x" sboTerm="SBO:0000247" id="MAM00655x" name="2-hydroxyphytanoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H70N7O18P3S">
+      <species metaid="M_MAM00655x" sboTerm="SBO:0000247" id="M_MAM00655x" name="2-hydroxyphytanoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H70N7O18P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00655x">
+            <rdf:Description rdf:about="#M_MAM00655x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/phyt2ohcoa"/>
@@ -16914,10 +16913,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00656c" sboTerm="SBO:0000247" id="MAM00656c" name="2-lysolecithin pool" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H19NO5PRCO2">
+      <species metaid="M_MAM00656c" sboTerm="SBO:0000247" id="M_MAM00656c" name="2-lysolecithin pool" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H19NO5PRCO2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00656c">
+            <rdf:Description rdf:about="#M_MAM00656c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/lpchol_hs"/>
@@ -16932,10 +16931,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00656l" sboTerm="SBO:0000247" id="MAM00656l" name="2-lysolecithin pool" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H19NO5PRCO2">
+      <species metaid="M_MAM00656l" sboTerm="SBO:0000247" id="M_MAM00656l" name="2-lysolecithin pool" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H19NO5PRCO2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00656l">
+            <rdf:Description rdf:about="#M_MAM00656l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/lpchol_hs"/>
@@ -16950,10 +16949,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00656r" sboTerm="SBO:0000247" id="MAM00656r" name="2-lysolecithin pool" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H19NO5PRCO2">
+      <species metaid="M_MAM00656r" sboTerm="SBO:0000247" id="M_MAM00656r" name="2-lysolecithin pool" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H19NO5PRCO2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00656r">
+            <rdf:Description rdf:about="#M_MAM00656r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/lpchol_hs"/>
@@ -16968,10 +16967,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00657m" sboTerm="SBO:0000247" id="MAM00657m" name="2-methoxy-6-(all-trans-decaprenyl)phenol" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C57H88O2">
+      <species metaid="M_MAM00657m" sboTerm="SBO:0000247" id="M_MAM00657m" name="2-methoxy-6-(all-trans-decaprenyl)phenol" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C57H88O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00657m">
+            <rdf:Description rdf:about="#M_MAM00657m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/2dp6mep"/>
@@ -16985,10 +16984,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00658m" sboTerm="SBO:0000247" id="MAM00658m" name="2-methoxy-6-all trans-decaprenyl-2-methoxy-1,4-benzoquinol" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C57H88O3">
+      <species metaid="M_MAM00658m" sboTerm="SBO:0000247" id="M_MAM00658m" name="2-methoxy-6-all trans-decaprenyl-2-methoxy-1,4-benzoquinol" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C57H88O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00658m">
+            <rdf:Description rdf:about="#M_MAM00658m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM9809"/>
@@ -16999,10 +16998,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00659c" sboTerm="SBO:0000247" id="MAM00659c" name="2-methoxyestradiol-17beta" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H26O3">
+      <species metaid="M_MAM00659c" sboTerm="SBO:0000247" id="M_MAM00659c" name="2-methoxyestradiol-17beta" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H26O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00659c">
+            <rdf:Description rdf:about="#M_MAM00659c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:28955"/>
@@ -17019,10 +17018,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00660c" sboTerm="SBO:0000247" id="MAM00660c" name="2-methoxyestrone" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H24O3">
+      <species metaid="M_MAM00660c" sboTerm="SBO:0000247" id="M_MAM00660c" name="2-methoxyestrone" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H24O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00660c">
+            <rdf:Description rdf:about="#M_MAM00660c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:1189"/>
@@ -17039,10 +17038,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00660r" sboTerm="SBO:0000247" id="MAM00660r" name="2-methoxyestrone" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H24O3">
+      <species metaid="M_MAM00660r" sboTerm="SBO:0000247" id="M_MAM00660r" name="2-methoxyestrone" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H24O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00660r">
+            <rdf:Description rdf:about="#M_MAM00660r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:1189"/>
@@ -17059,10 +17058,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00661c" sboTerm="SBO:0000247" id="MAM00661c" name="2-methyl-3-oxopropanoate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C4H5O3">
+      <species metaid="M_MAM00661c" sboTerm="SBO:0000247" id="M_MAM00661c" name="2-methyl-3-oxopropanoate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C4H5O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00661c">
+            <rdf:Description rdf:about="#M_MAM00661c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/2mop"/>
@@ -17078,10 +17077,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00661m" sboTerm="SBO:0000247" id="MAM00661m" name="2-methyl-3-oxopropanoate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C4H5O3">
+      <species metaid="M_MAM00661m" sboTerm="SBO:0000247" id="M_MAM00661m" name="2-methyl-3-oxopropanoate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C4H5O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00661m">
+            <rdf:Description rdf:about="#M_MAM00661m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/2mop"/>
@@ -17097,10 +17096,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00662m" sboTerm="SBO:0000247" id="MAM00662m" name="2-methylacetoacetyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C26H38N7O18P3S">
+      <species metaid="M_MAM00662m" sboTerm="SBO:0000247" id="M_MAM00662m" name="2-methylacetoacetyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C26H38N7O18P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00662m">
+            <rdf:Description rdf:about="#M_MAM00662m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/2maacoa"/>
@@ -17114,10 +17113,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00663m" sboTerm="SBO:0000247" id="MAM00663m" name="2-methylbutyryl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C26H40N7O17P3S">
+      <species metaid="M_MAM00663m" sboTerm="SBO:0000247" id="M_MAM00663m" name="2-methylbutyryl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C26H40N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00663m">
+            <rdf:Description rdf:about="#M_MAM00663m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/2mbcoa"/>
@@ -17133,10 +17132,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00664m" sboTerm="SBO:0000247" id="MAM00664m" name="2-methylbutyrylglycine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C7H12NO3">
+      <species metaid="M_MAM00664m" sboTerm="SBO:0000247" id="M_MAM00664m" name="2-methylbutyrylglycine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C7H12NO3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00664m">
+            <rdf:Description rdf:about="#M_MAM00664m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:240943"/>
@@ -17150,10 +17149,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00665c" sboTerm="SBO:0000247" id="MAM00665c" name="2-methylcitrate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C7H7O7">
+      <species metaid="M_MAM00665c" sboTerm="SBO:0000247" id="M_MAM00665c" name="2-methylcitrate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C7H7O7">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00665c">
+            <rdf:Description rdf:about="#M_MAM00665c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/2mcit"/>
@@ -17169,10 +17168,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00665e" sboTerm="SBO:0000247" id="MAM00665e" name="2-methylcitrate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C7H7O7">
+      <species metaid="M_MAM00665e" sboTerm="SBO:0000247" id="M_MAM00665e" name="2-methylcitrate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C7H7O7">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00665e">
+            <rdf:Description rdf:about="#M_MAM00665e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/2mcit"/>
@@ -17188,10 +17187,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00666m" sboTerm="SBO:0000247" id="MAM00666m" name="2-methylglutaconic acid" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H6O4">
+      <species metaid="M_MAM00666m" sboTerm="SBO:0000247" id="M_MAM00666m" name="2-methylglutaconic acid" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H6O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00666m">
+            <rdf:Description rdf:about="#M_MAM00666m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM165975"/>
@@ -17203,10 +17202,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM00667m" sboTerm="SBO:0000247" id="MAM00667m" name="2-methylglutaconyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C27H37N7O19P3S">
+      <species metaid="M_MAM00667m" sboTerm="SBO:0000247" id="M_MAM00667m" name="2-methylglutaconyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C27H37N7O19P3S">
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-            <rdf:Description rdf:about="#MAM00667m">
+            <rdf:Description rdf:about="#M_MAM00667m">
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@@ -17217,10 +17216,10 @@
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-      <species metaid="MAM00668c" sboTerm="SBO:0000247" id="MAM00668c" name="2-naphthol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H8O">
+      <species metaid="M_MAM00668c" sboTerm="SBO:0000247" id="M_MAM00668c" name="2-naphthol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H8O">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00668c">
+            <rdf:Description rdf:about="#M_MAM00668c">
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@@ -17233,10 +17232,10 @@
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-      <species metaid="MAM00669c" sboTerm="SBO:0000247" id="MAM00669c" name="2-oxo-3-methylvalerate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H9O3">
+      <species metaid="M_MAM00669c" sboTerm="SBO:0000247" id="M_MAM00669c" name="2-oxo-3-methylvalerate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H9O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00669c">
+            <rdf:Description rdf:about="#M_MAM00669c">
               <bqbiol:is>
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                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/3mop"/>
@@ -17252,10 +17251,10 @@
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-      <species metaid="MAM00669m" sboTerm="SBO:0000247" id="MAM00669m" name="2-oxo-3-methylvalerate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H9O3">
+      <species metaid="M_MAM00669m" sboTerm="SBO:0000247" id="M_MAM00669m" name="2-oxo-3-methylvalerate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H9O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00669m">
+            <rdf:Description rdf:about="#M_MAM00669m">
               <bqbiol:is>
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                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/3mop"/>
@@ -17271,10 +17270,10 @@
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-      <species metaid="MAM00670c" sboTerm="SBO:0000247" id="MAM00670c" name="2-oxoadipate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H6O5">
+      <species metaid="M_MAM00670c" sboTerm="SBO:0000247" id="M_MAM00670c" name="2-oxoadipate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H6O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00670c">
+            <rdf:Description rdf:about="#M_MAM00670c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/2oxoadp"/>
@@ -17290,10 +17289,10 @@
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-      <species metaid="MAM00670m" sboTerm="SBO:0000247" id="MAM00670m" name="2-oxoadipate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H6O5">
+      <species metaid="M_MAM00670m" sboTerm="SBO:0000247" id="M_MAM00670m" name="2-oxoadipate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H6O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00670m">
+            <rdf:Description rdf:about="#M_MAM00670m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/2oxoadp"/>
@@ -17309,10 +17308,10 @@
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-      <species metaid="MAM00671c" sboTerm="SBO:0000247" id="MAM00671c" name="2-oxobutyrate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C4H5O3">
+      <species metaid="M_MAM00671c" sboTerm="SBO:0000247" id="M_MAM00671c" name="2-oxobutyrate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C4H5O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00671c">
+            <rdf:Description rdf:about="#M_MAM00671c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/2obut"/>
@@ -17329,10 +17328,10 @@
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-      <species metaid="MAM00671m" sboTerm="SBO:0000247" id="MAM00671m" name="2-oxobutyrate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C4H5O3">
+      <species metaid="M_MAM00671m" sboTerm="SBO:0000247" id="M_MAM00671m" name="2-oxobutyrate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C4H5O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00671m">
+            <rdf:Description rdf:about="#M_MAM00671m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/2obut"/>
@@ -17349,10 +17348,10 @@
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-      <species metaid="MAM00672c" sboTerm="SBO:0000247" id="MAM00672c" name="2-oxoglutaramate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C5H6NO4">
+      <species metaid="M_MAM00672c" sboTerm="SBO:0000247" id="M_MAM00672c" name="2-oxoglutaramate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C5H6NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00672c">
+            <rdf:Description rdf:about="#M_MAM00672c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:30882"/>
@@ -17366,10 +17365,10 @@
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-      <species metaid="MAM00672m" sboTerm="SBO:0000247" id="MAM00672m" name="2-oxoglutaramate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C5H6NO4">
+      <species metaid="M_MAM00672m" sboTerm="SBO:0000247" id="M_MAM00672m" name="2-oxoglutaramate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C5H6NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00672m">
+            <rdf:Description rdf:about="#M_MAM00672m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:30882"/>
@@ -17383,10 +17382,10 @@
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-      <species metaid="MAM00673c" sboTerm="SBO:0000247" id="MAM00673c" name="2-phenylacetamide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H9NO">
+      <species metaid="M_MAM00673c" sboTerm="SBO:0000247" id="M_MAM00673c" name="2-phenylacetamide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H9NO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00673c">
+            <rdf:Description rdf:about="#M_MAM00673c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:16562"/>
@@ -17399,10 +17398,10 @@
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-      <species metaid="MAM00674c" sboTerm="SBO:0000247" id="MAM00674c" name="2-phospho-D-glycerate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C3H4O7P">
+      <species metaid="M_MAM00674c" sboTerm="SBO:0000247" id="M_MAM00674c" name="2-phospho-D-glycerate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C3H4O7P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00674c">
+            <rdf:Description rdf:about="#M_MAM00674c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/2pg"/>
@@ -17417,10 +17416,10 @@
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         </annotation>
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-      <species metaid="MAM00675c" sboTerm="SBO:0000247" id="MAM00675c" name="2-phosphoglycolate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C2H2O6P">
+      <species metaid="M_MAM00675c" sboTerm="SBO:0000247" id="M_MAM00675c" name="2-phosphoglycolate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C2H2O6P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00675c">
+            <rdf:Description rdf:about="#M_MAM00675c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/2pglyc"/>
@@ -17435,10 +17434,10 @@
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         </annotation>
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-      <species metaid="MAM00676c" sboTerm="SBO:0000247" id="MAM00676c" name="2-S-glutathionyl acetate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C12H18N3O8S">
+      <species metaid="M_MAM00676c" sboTerm="SBO:0000247" id="M_MAM00676c" name="2-S-glutathionyl acetate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C12H18N3O8S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00676c">
+            <rdf:Description rdf:about="#M_MAM00676c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C14862"/>
@@ -17450,10 +17449,10 @@
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-      <species metaid="MAM00678m" sboTerm="SBO:0000247" id="MAM00678m" name="2-trans-4-cis-decadienoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C31H46N7O17P3S">
+      <species metaid="M_MAM00678m" sboTerm="SBO:0000247" id="M_MAM00678m" name="2-trans-4-cis-decadienoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C31H46N7O17P3S">
         <annotation>
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-            <rdf:Description rdf:about="#MAM00678m">
+            <rdf:Description rdf:about="#M_MAM00678m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM1601"/>
@@ -17465,10 +17464,10 @@
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-      <species metaid="MAM00678x" sboTerm="SBO:0000247" id="MAM00678x" name="2-trans-4-cis-decadienoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C31H46N7O17P3S">
+      <species metaid="M_MAM00678x" sboTerm="SBO:0000247" id="M_MAM00678x" name="2-trans-4-cis-decadienoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C31H46N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00678x">
+            <rdf:Description rdf:about="#M_MAM00678x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM1601"/>
@@ -17480,10 +17479,10 @@
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-      <species metaid="MAM00679c" sboTerm="SBO:0000247" id="MAM00679c" name="2-trans-7,10,13,16,19-all-cis-docosahexaenoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C43H62N7O17P3S">
+      <species metaid="M_MAM00679c" sboTerm="SBO:0000247" id="M_MAM00679c" name="2-trans-7,10,13,16,19-all-cis-docosahexaenoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C43H62N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00679c">
+            <rdf:Description rdf:about="#M_MAM00679c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM164160"/>
@@ -17494,10 +17493,10 @@
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         </annotation>
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@@ -17508,10 +17507,10 @@
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@@ -17523,10 +17522,10 @@
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@@ -17536,10 +17535,10 @@
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@@ -17549,10 +17548,10 @@
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+      <species metaid="M_MAM00684c" sboTerm="SBO:0000247" id="M_MAM00684c" name="3-(methylthio)propionic acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C4H7O2S">
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@@ -17568,10 +17567,10 @@
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+      <species metaid="M_MAM00685x" sboTerm="SBO:0000247" id="M_MAM00685x" name="3(R)-hydroxy-(2S,6R,10)-trimethyl-hendecanoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C35H58N7O18P3S">
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@@ -17581,10 +17580,10 @@
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+      <species metaid="M_MAM00686x" sboTerm="SBO:0000247" id="M_MAM00686x" name="3(R)-hydroxy-(4R,8R,12R)-trimethyl-tridecanoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C37H62N7O18P3S">
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@@ -17594,10 +17593,10 @@
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+      <species metaid="M_MAM00687m" sboTerm="SBO:0000247" id="M_MAM00687m" name="3(S),10(R)-OH-octadeca-6-trans-4,12-cis-trienoate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H29O4">
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@@ -17608,10 +17607,10 @@
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+      <species metaid="M_MAM00687x" sboTerm="SBO:0000247" id="M_MAM00687x" name="3(S),10(R)-OH-octadeca-6-trans-4,12-cis-trienoate" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H29O4">
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@@ -17622,10 +17621,10 @@
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@@ -17636,10 +17635,10 @@
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+      <species metaid="M_MAM00688x" sboTerm="SBO:0000247" id="M_MAM00688x" name="3(S),10(R)-OH-octadeca-6-trans-4,12-cis-trienoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C39H60N7O19P3S">
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@@ -17650,10 +17649,10 @@
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+      <species metaid="M_MAM00689m" sboTerm="SBO:0000247" id="M_MAM00689m" name="3(S),12(R)-dihydroxy-5-oxo-eicosa-(8E,10E,14Z)-trienoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H62N7O20P3S">
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@@ -17664,10 +17663,10 @@
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+      <species metaid="M_MAM00689x" sboTerm="SBO:0000247" id="M_MAM00689x" name="3(S),12(R)-dihydroxy-5-oxo-eicosa-(8E,10E,14Z)-trienoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H62N7O20P3S">
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@@ -17678,10 +17677,10 @@
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+      <species metaid="M_MAM00690m" sboTerm="SBO:0000247" id="M_MAM00690m" name="3(S),12(S)-dihydroxy-5-oxo-eicosa-(8E,10E,14Z)-trienoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H62N7O20P3S">
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@@ -17692,10 +17691,10 @@
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+      <species metaid="M_MAM00690x" sboTerm="SBO:0000247" id="M_MAM00690x" name="3(S),12(S)-dihydroxy-5-oxo-eicosa-(8E,10E,14Z)-trienoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H62N7O20P3S">
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@@ -17706,10 +17705,10 @@
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+            <rdf:Description rdf:about="#M_MAM00691m">
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                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM162897"/>
@@ -17720,10 +17719,10 @@
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+      <species metaid="M_MAM00691x" sboTerm="SBO:0000247" id="M_MAM00691x" name="3(S),5(S),12(R)-trihydroxy-eicosa-8-trans-6,14-cis-trienoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H64N7O20P3S">
         <annotation>
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+            <rdf:Description rdf:about="#M_MAM00691x">
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                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM162897"/>
@@ -17734,10 +17733,10 @@
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+      <species metaid="M_MAM00692m" sboTerm="SBO:0000247" id="M_MAM00692m" name="3(S),6(R)-dihydroxy-tetradec-(8Z)-enoate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C14H25O4">
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-            <rdf:Description rdf:about="#MAM00692m">
+            <rdf:Description rdf:about="#M_MAM00692m">
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@@ -17747,10 +17746,10 @@
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+      <species metaid="M_MAM00693m" sboTerm="SBO:0000247" id="M_MAM00693m" name="3(S),6(S)-dihydroxy-tetradec-(8Z)-enoate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C14H25O4">
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-            <rdf:Description rdf:about="#MAM00693m">
+            <rdf:Description rdf:about="#M_MAM00693m">
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@@ -17760,10 +17759,10 @@
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-      <species metaid="MAM00694m" sboTerm="SBO:0000247" id="MAM00694m" name="3(S),8(R)-dihydroxy-(6E,10Z)-hexadecadienoate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C16H27O4">
+      <species metaid="M_MAM00694m" sboTerm="SBO:0000247" id="M_MAM00694m" name="3(S),8(R)-dihydroxy-(6E,10Z)-hexadecadienoate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C16H27O4">
         <annotation>
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-            <rdf:Description rdf:about="#MAM00694m">
+            <rdf:Description rdf:about="#M_MAM00694m">
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                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/CE5306"/>
@@ -17773,10 +17772,10 @@
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+      <species metaid="M_MAM00695m" sboTerm="SBO:0000247" id="M_MAM00695m" name="3(S),8(S)-dihydroxy-(6E,10Z)-hexadecadienoate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C16H27O4">
         <annotation>
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-            <rdf:Description rdf:about="#MAM00695m">
+            <rdf:Description rdf:about="#M_MAM00695m">
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                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/CE5318"/>
@@ -17786,10 +17785,10 @@
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+      <species metaid="M_MAM00696m" sboTerm="SBO:0000247" id="M_MAM00696m" name="3(S)-hydroxy-(5Z,8Z)-tetradecadienoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C35H54N7O18P3S">
         <annotation>
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-            <rdf:Description rdf:about="#MAM00696m">
+            <rdf:Description rdf:about="#M_MAM00696m">
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                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM166068"/>
@@ -17800,10 +17799,10 @@
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+      <species metaid="M_MAM00696x" sboTerm="SBO:0000247" id="M_MAM00696x" name="3(S)-hydroxy-(5Z,8Z)-tetradecadienoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C35H54N7O18P3S">
         <annotation>
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-            <rdf:Description rdf:about="#MAM00696x">
+            <rdf:Description rdf:about="#M_MAM00696x">
               <bqbiol:is>
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                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM166068"/>
@@ -17814,10 +17813,10 @@
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+      <species metaid="M_MAM00697m" sboTerm="SBO:0000247" id="M_MAM00697m" name="3(S)-hydroxy-(6Z,9Z,12Z)-octadecatrienoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C39H60N7O18P3S">
         <annotation>
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-            <rdf:Description rdf:about="#MAM00697m">
+            <rdf:Description rdf:about="#M_MAM00697m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/CE2438"/>
@@ -17827,10 +17826,10 @@
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+      <species metaid="M_MAM00697x" sboTerm="SBO:0000247" id="M_MAM00697x" name="3(S)-hydroxy-(6Z,9Z,12Z)-octadecatrienoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C39H60N7O18P3S">
         <annotation>
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-            <rdf:Description rdf:about="#MAM00697x">
+            <rdf:Description rdf:about="#M_MAM00697x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/CE2438"/>
@@ -17840,10 +17839,10 @@
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-      <species metaid="MAM00698c" sboTerm="SBO:0000247" id="MAM00698c" name="3(S)-hydroxy-10,13,16-all-cis-docosatrienoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C43H68N7O18P3S">
+      <species metaid="M_MAM00698c" sboTerm="SBO:0000247" id="M_MAM00698c" name="3(S)-hydroxy-10,13,16-all-cis-docosatrienoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C43H68N7O18P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00698c">
+            <rdf:Description rdf:about="#M_MAM00698c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM150755"/>
@@ -17854,10 +17853,10 @@
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-      <species metaid="MAM00699c" sboTerm="SBO:0000247" id="MAM00699c" name="3(S)-hydroxy-11-cis-docosenoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C43H72N7O18P3S">
+      <species metaid="M_MAM00699c" sboTerm="SBO:0000247" id="M_MAM00699c" name="3(S)-hydroxy-11-cis-docosenoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C43H72N7O18P3S">
         <annotation>
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-            <rdf:Description rdf:about="#MAM00699c">
+            <rdf:Description rdf:about="#M_MAM00699c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M00699"/>
@@ -17867,10 +17866,10 @@
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-      <species metaid="MAM00700c" sboTerm="SBO:0000247" id="MAM00700c" name="3(S)-hydroxy-11-cis-eicosenoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H68N7O18P3S">
+      <species metaid="M_MAM00700c" sboTerm="SBO:0000247" id="M_MAM00700c" name="3(S)-hydroxy-11-cis-eicosenoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H68N7O18P3S">
         <annotation>
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-            <rdf:Description rdf:about="#MAM00700c">
+            <rdf:Description rdf:about="#M_MAM00700c">
               <bqbiol:is>
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                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM163172"/>
@@ -17881,10 +17880,10 @@
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+      <species metaid="M_MAM00700m" sboTerm="SBO:0000247" id="M_MAM00700m" name="3(S)-hydroxy-11-cis-eicosenoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H68N7O18P3S">
         <annotation>
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-            <rdf:Description rdf:about="#MAM00700m">
+            <rdf:Description rdf:about="#M_MAM00700m">
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                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM163172"/>
@@ -17895,10 +17894,10 @@
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+      <species metaid="M_MAM00700x" sboTerm="SBO:0000247" id="M_MAM00700x" name="3(S)-hydroxy-11-cis-eicosenoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H68N7O18P3S">
         <annotation>
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-            <rdf:Description rdf:about="#MAM00700x">
+            <rdf:Description rdf:about="#M_MAM00700x">
               <bqbiol:is>
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                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM163172"/>
@@ -17909,10 +17908,10 @@
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-      <species metaid="MAM00701c" sboTerm="SBO:0000247" id="MAM00701c" name="3(S)-hydroxy-13-cis-docosenoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C43H72N7O18P3S">
+      <species metaid="M_MAM00701c" sboTerm="SBO:0000247" id="M_MAM00701c" name="3(S)-hydroxy-13-cis-docosenoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C43H72N7O18P3S">
         <annotation>
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-            <rdf:Description rdf:about="#MAM00701c">
+            <rdf:Description rdf:about="#M_MAM00701c">
               <bqbiol:is>
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                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM163173"/>
@@ -17923,10 +17922,10 @@
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+      <species metaid="M_MAM00701m" sboTerm="SBO:0000247" id="M_MAM00701m" name="3(S)-hydroxy-13-cis-docosenoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C43H72N7O18P3S">
         <annotation>
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+            <rdf:Description rdf:about="#M_MAM00701m">
               <bqbiol:is>
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                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM163173"/>
@@ -17937,10 +17936,10 @@
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+      <species metaid="M_MAM00701x" sboTerm="SBO:0000247" id="M_MAM00701x" name="3(S)-hydroxy-13-cis-docosenoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C43H72N7O18P3S">
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-            <rdf:Description rdf:about="#MAM00701x">
+            <rdf:Description rdf:about="#M_MAM00701x">
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                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM163173"/>
@@ -17951,10 +17950,10 @@
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+      <species metaid="M_MAM00702c" sboTerm="SBO:0000247" id="M_MAM00702c" name="3(S)-hydroxy-13-cis-eicosenoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H68N7O18P3S">
         <annotation>
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-            <rdf:Description rdf:about="#MAM00702c">
+            <rdf:Description rdf:about="#M_MAM00702c">
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                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM164331"/>
@@ -17965,10 +17964,10 @@
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+      <species metaid="M_MAM00702m" sboTerm="SBO:0000247" id="M_MAM00702m" name="3(S)-hydroxy-13-cis-eicosenoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H68N7O18P3S">
         <annotation>
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-            <rdf:Description rdf:about="#MAM00702m">
+            <rdf:Description rdf:about="#M_MAM00702m">
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                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM164331"/>
@@ -17979,10 +17978,10 @@
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+      <species metaid="M_MAM00702x" sboTerm="SBO:0000247" id="M_MAM00702x" name="3(S)-hydroxy-13-cis-eicosenoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H68N7O18P3S">
         <annotation>
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-            <rdf:Description rdf:about="#MAM00702x">
+            <rdf:Description rdf:about="#M_MAM00702x">
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                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM164331"/>
@@ -17993,10 +17992,10 @@
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-      <species metaid="MAM00703m" sboTerm="SBO:0000247" id="MAM00703m" name="3(S)-hydroxy-2(S),6-dimethyl-heptanoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C30H48N7O18P3S">
+      <species metaid="M_MAM00703m" sboTerm="SBO:0000247" id="M_MAM00703m" name="3(S)-hydroxy-2(S),6-dimethyl-heptanoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C30H48N7O18P3S">
         <annotation>
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-            <rdf:Description rdf:about="#MAM00703m">
+            <rdf:Description rdf:about="#M_MAM00703m">
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                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM150756"/>
@@ -18007,10 +18006,10 @@
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-      <species metaid="MAM00704c" sboTerm="SBO:0000247" id="MAM00704c" name="3(S)-hydroxy-3-oxo-eicosadienoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H66N7O18P3S">
+      <species metaid="M_MAM00704c" sboTerm="SBO:0000247" id="M_MAM00704c" name="3(S)-hydroxy-3-oxo-eicosadienoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H66N7O18P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00704c">
+            <rdf:Description rdf:about="#M_MAM00704c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM91381"/>
@@ -18021,10 +18020,10 @@
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-      <species metaid="MAM00705m" sboTerm="SBO:0000247" id="MAM00705m" name="3(S)-hydroxy-4(R),8-dimethyl-nonanoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C32H52N7O18P3S">
+      <species metaid="M_MAM00705m" sboTerm="SBO:0000247" id="M_MAM00705m" name="3(S)-hydroxy-4(R),8-dimethyl-nonanoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C32H52N7O18P3S">
         <annotation>
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-            <rdf:Description rdf:about="#MAM00705m">
+            <rdf:Description rdf:about="#M_MAM00705m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM150757"/>
@@ -18035,10 +18034,10 @@
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-      <species metaid="MAM00706m" sboTerm="SBO:0000247" id="MAM00706m" name="3(S)-hydroxy-4-methyl-pentanoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C27H42N7O18P3S">
+      <species metaid="M_MAM00706m" sboTerm="SBO:0000247" id="M_MAM00706m" name="3(S)-hydroxy-4-methyl-pentanoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C27H42N7O18P3S">
         <annotation>
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-            <rdf:Description rdf:about="#MAM00706m">
+            <rdf:Description rdf:about="#M_MAM00706m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM150758"/>
@@ -18049,10 +18048,10 @@
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-      <species metaid="MAM00707c" sboTerm="SBO:0000247" id="MAM00707c" name="3(S)-hydroxy-9-cis-eicosenoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H68N7O18P3S">
+      <species metaid="M_MAM00707c" sboTerm="SBO:0000247" id="M_MAM00707c" name="3(S)-hydroxy-9-cis-eicosenoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H68N7O18P3S">
         <annotation>
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-            <rdf:Description rdf:about="#MAM00707c">
+            <rdf:Description rdf:about="#M_MAM00707c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M00707"/>
@@ -18062,10 +18061,10 @@
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-      <species metaid="MAM00708c" sboTerm="SBO:0000247" id="MAM00708c" name="3(S)-hydroxy-all-cis-8,11,14,17-eicosatetraenoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H62N7O18P3S">
+      <species metaid="M_MAM00708c" sboTerm="SBO:0000247" id="M_MAM00708c" name="3(S)-hydroxy-all-cis-8,11,14,17-eicosatetraenoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H62N7O18P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00708c">
+            <rdf:Description rdf:about="#M_MAM00708c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM7114"/>
@@ -18076,10 +18075,10 @@
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         </annotation>
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-      <species metaid="MAM00709c" sboTerm="SBO:0000247" id="MAM00709c" name="3(S)-hydroxy-cis-15-tetracosaenoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C45H76N7O18P3S">
+      <species metaid="M_MAM00709c" sboTerm="SBO:0000247" id="M_MAM00709c" name="3(S)-hydroxy-cis-15-tetracosaenoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C45H76N7O18P3S">
         <annotation>
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-            <rdf:Description rdf:about="#MAM00709c">
+            <rdf:Description rdf:about="#M_MAM00709c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM163174"/>
@@ -18090,10 +18089,10 @@
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         </annotation>
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-      <species metaid="MAM00709x" sboTerm="SBO:0000247" id="MAM00709x" name="3(S)-hydroxy-cis-15-tetracosaenoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C45H76N7O18P3S">
+      <species metaid="M_MAM00709x" sboTerm="SBO:0000247" id="M_MAM00709x" name="3(S)-hydroxy-cis-15-tetracosaenoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C45H76N7O18P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00709x">
+            <rdf:Description rdf:about="#M_MAM00709x">
               <bqbiol:is>
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                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM163174"/>
@@ -18104,10 +18103,10 @@
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-      <species metaid="MAM00710c" sboTerm="SBO:0000247" id="MAM00710c" name="3(S)-hydroxy-dihomo-gamma-linolenoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H64N7O18P3S">
+      <species metaid="M_MAM00710c" sboTerm="SBO:0000247" id="M_MAM00710c" name="3(S)-hydroxy-dihomo-gamma-linolenoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H64N7O18P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00710c">
+            <rdf:Description rdf:about="#M_MAM00710c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/CE4791"/>
@@ -18117,10 +18116,10 @@
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-      <species metaid="MAM00710m" sboTerm="SBO:0000247" id="MAM00710m" name="3(S)-hydroxy-dihomo-gamma-linolenoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H64N7O18P3S">
+      <species metaid="M_MAM00710m" sboTerm="SBO:0000247" id="M_MAM00710m" name="3(S)-hydroxy-dihomo-gamma-linolenoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H64N7O18P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00710m">
+            <rdf:Description rdf:about="#M_MAM00710m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/CE4791"/>
@@ -18130,10 +18129,10 @@
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-      <species metaid="MAM00710x" sboTerm="SBO:0000247" id="MAM00710x" name="3(S)-hydroxy-dihomo-gamma-linolenoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H64N7O18P3S">
+      <species metaid="M_MAM00710x" sboTerm="SBO:0000247" id="M_MAM00710x" name="3(S)-hydroxy-dihomo-gamma-linolenoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H64N7O18P3S">
         <annotation>
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-            <rdf:Description rdf:about="#MAM00710x">
+            <rdf:Description rdf:about="#M_MAM00710x">
               <bqbiol:is>
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                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/CE4791"/>
@@ -18143,10 +18142,10 @@
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-      <species metaid="MAM00711c" sboTerm="SBO:0000247" id="MAM00711c" name="3(S)-hydroxy-docosa-10,13,16,19-all-cis-tetraenoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C43H66N7O18P3S">
+      <species metaid="M_MAM00711c" sboTerm="SBO:0000247" id="M_MAM00711c" name="3(S)-hydroxy-docosa-10,13,16,19-all-cis-tetraenoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C43H66N7O18P3S">
         <annotation>
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-            <rdf:Description rdf:about="#MAM00711c">
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@@ -18157,10 +18156,10 @@
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+      <species metaid="M_MAM00712c" sboTerm="SBO:0000247" id="M_MAM00712c" name="3(S)-hydroxy-docosa-13,16,19-all-cis-trienoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C43H68N7O18P3S">
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@@ -18170,10 +18169,10 @@
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+      <species metaid="M_MAM00713c" sboTerm="SBO:0000247" id="M_MAM00713c" name="3(S)-hydroxy-docosa-7,10,13,16,19-all-cis-pentaenoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C43H64N7O18P3S">
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@@ -18184,10 +18183,10 @@
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+      <species metaid="M_MAM00714c" sboTerm="SBO:0000247" id="M_MAM00714c" name="3(S)-hydroxy-docosa-7,10,13,16-all-cis-tetraenoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C43H66N7O18P3S">
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@@ -18198,10 +18197,10 @@
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+      <species metaid="M_MAM00715c" sboTerm="SBO:0000247" id="M_MAM00715c" name="3(S)-hydroxy-hexacosenoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C47H80N7O18P3S">
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@@ -18211,10 +18210,10 @@
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+      <species metaid="M_MAM00715x" sboTerm="SBO:0000247" id="M_MAM00715x" name="3(S)-hydroxy-hexacosenoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C47H80N7O18P3S">
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@@ -18224,10 +18223,10 @@
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+      <species metaid="M_MAM00716c" sboTerm="SBO:0000247" id="M_MAM00716c" name="3(S)-hydroxy-tetracosa-12,15,18,21-all-cis-tetraenoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C45H70N7O18P3S">
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+            <rdf:Description rdf:about="#M_MAM00716c">
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@@ -18238,10 +18237,10 @@
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+      <species metaid="M_MAM00717x" sboTerm="SBO:0000247" id="M_MAM00717x" name="3(S)-hydroxy-tetracosa-6,9,12,15,18-all-cis-pentaenoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C45H68N7O18P3S">
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@@ -18252,10 +18251,10 @@
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+      <species metaid="M_MAM00718c" sboTerm="SBO:0000247" id="M_MAM00718c" name="3(S)-hydroxy-tetracosa-9,12,15,18,21-all-cis-pentaenoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C45H68N7O18P3S">
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@@ -18266,10 +18265,10 @@
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+      <species metaid="M_MAM00719c" sboTerm="SBO:0000247" id="M_MAM00719c" name="3,3,5-triiodo-L-thyronine-beta-D-glucuronoside" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C21H19I3NO10">
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+            <rdf:Description rdf:about="#M_MAM00719c">
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@@ -18280,10 +18279,10 @@
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+      <species metaid="M_MAM00719r" sboTerm="SBO:0000247" id="M_MAM00719r" name="3,3,5-triiodo-L-thyronine-beta-D-glucuronoside" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C21H19I3NO10">
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@@ -18294,10 +18293,10 @@
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+      <species metaid="M_MAM00720c" sboTerm="SBO:0000247" id="M_MAM00720c" name="3,3-diiodo-L-thyronine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C15H13I2NO4">
         <annotation>
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+            <rdf:Description rdf:about="#M_MAM00720c">
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@@ -18310,10 +18309,10 @@
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+      <species metaid="M_MAM00720r" sboTerm="SBO:0000247" id="M_MAM00720r" name="3,3-diiodo-L-thyronine" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C15H13I2NO4">
         <annotation>
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@@ -18326,10 +18325,10 @@
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+      <species metaid="M_MAM00721c" sboTerm="SBO:0000247" id="M_MAM00721c" name="3,3-diiodo-L-thyronine-4-O-sulfate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C15H12I2NO7S">
         <annotation>
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@@ -18340,10 +18339,10 @@
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+      <species metaid="M_MAM00722c" sboTerm="SBO:0000247" id="M_MAM00722c" name="3,3-diiodo-L-thyronine-beta-D-glucuronoside" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C21H20I2NO10">
         <annotation>
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@@ -18354,10 +18353,10 @@
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+      <species metaid="M_MAM00722r" sboTerm="SBO:0000247" id="M_MAM00722r" name="3,3-diiodo-L-thyronine-beta-D-glucuronoside" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C21H20I2NO10">
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@@ -18368,10 +18367,10 @@
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+      <species metaid="M_MAM00723c" sboTerm="SBO:0000247" id="M_MAM00723c" name="3,4-dihydro-1,4-benzothiazine-3-carboxylate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C12H13N2O5S">
         <annotation>
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+            <rdf:Description rdf:about="#M_MAM00723c">
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@@ -18381,10 +18380,10 @@
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-      <species metaid="MAM00724c" sboTerm="SBO:0000247" id="MAM00724c" name="3,4-dihydro-3-hydroxy-4-S-glutathionyl bromobenzene" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C16H22BrN3O7S">
+      <species metaid="M_MAM00724c" sboTerm="SBO:0000247" id="M_MAM00724c" name="3,4-dihydro-3-hydroxy-4-S-glutathionyl bromobenzene" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C16H22BrN3O7S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00724c">
+            <rdf:Description rdf:about="#M_MAM00724c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C14847"/>
@@ -18396,10 +18395,10 @@
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-      <species metaid="MAM00725m" sboTerm="SBO:0000247" id="MAM00725m" name="3,4-dihydroxy-5-all-trans-decaprenylbenzoate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C57H85O4">
+      <species metaid="M_MAM00725m" sboTerm="SBO:0000247" id="M_MAM00725m" name="3,4-dihydroxy-5-all-trans-decaprenylbenzoate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C57H85O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00725m">
+            <rdf:Description rdf:about="#M_MAM00725m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/3dpdhb"/>
@@ -18412,10 +18411,10 @@
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         </annotation>
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-      <species metaid="MAM00726c" sboTerm="SBO:0000247" id="MAM00726c" name="3,4-dihydroxymandelaldehyde" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H8O4">
+      <species metaid="M_MAM00726c" sboTerm="SBO:0000247" id="M_MAM00726c" name="3,4-dihydroxymandelaldehyde" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H8O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00726c">
+            <rdf:Description rdf:about="#M_MAM00726c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/34dhmald"/>
@@ -18430,10 +18429,10 @@
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-      <species metaid="MAM00727c" sboTerm="SBO:0000247" id="MAM00727c" name="3,4-dihydroxymandelate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C8H7O5">
+      <species metaid="M_MAM00727c" sboTerm="SBO:0000247" id="M_MAM00727c" name="3,4-dihydroxymandelate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C8H7O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00727c">
+            <rdf:Description rdf:about="#M_MAM00727c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/34dhoxmand"/>
@@ -18448,10 +18447,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM00728c" sboTerm="SBO:0000247" id="MAM00728c" name="3,4-dihydroxyphenylacetaldehyde" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H8O3">
+      <species metaid="M_MAM00728c" sboTerm="SBO:0000247" id="M_MAM00728c" name="3,4-dihydroxyphenylacetaldehyde" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H8O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00728c">
+            <rdf:Description rdf:about="#M_MAM00728c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/34dhpac"/>
@@ -18467,10 +18466,10 @@
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         </annotation>
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-      <species metaid="MAM00729c" sboTerm="SBO:0000247" id="MAM00729c" name="3,4-dihydroxyphenylacetate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C8H7O4">
+      <species metaid="M_MAM00729c" sboTerm="SBO:0000247" id="M_MAM00729c" name="3,4-dihydroxyphenylacetate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C8H7O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00729c">
+            <rdf:Description rdf:about="#M_MAM00729c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/34dhpha"/>
@@ -18486,10 +18485,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM00730c" sboTerm="SBO:0000247" id="MAM00730c" name="3,4-dihydroxyphenylethyleneglycol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H10O4">
+      <species metaid="M_MAM00730c" sboTerm="SBO:0000247" id="M_MAM00730c" name="3,4-dihydroxyphenylethyleneglycol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H10O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00730c">
+            <rdf:Description rdf:about="#M_MAM00730c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/34dhoxpeg"/>
@@ -18505,10 +18504,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM00730e" sboTerm="SBO:0000247" id="MAM00730e" name="3,4-dihydroxyphenylethyleneglycol" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H10O4">
+      <species metaid="M_MAM00730e" sboTerm="SBO:0000247" id="M_MAM00730e" name="3,4-dihydroxyphenylethyleneglycol" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H10O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00730e">
+            <rdf:Description rdf:about="#M_MAM00730e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/34dhoxpeg"/>
@@ -18524,10 +18523,10 @@
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         </annotation>
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-      <species metaid="MAM00731c" sboTerm="SBO:0000247" id="MAM00731c" name="3,4-epoxynonanal" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H16O2">
+      <species metaid="M_MAM00731c" sboTerm="SBO:0000247" id="M_MAM00731c" name="3,4-epoxynonanal" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H16O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00731c">
+            <rdf:Description rdf:about="#M_MAM00731c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM150783"/>
@@ -18538,10 +18537,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM00732c" sboTerm="SBO:0000247" id="MAM00732c" name="3,5,3,5-tetraiodo-L-thyronine-beta-D-glucuronoside" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C21H18I4NO10">
+      <species metaid="M_MAM00732c" sboTerm="SBO:0000247" id="M_MAM00732c" name="3,5,3,5-tetraiodo-L-thyronine-beta-D-glucuronoside" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C21H18I4NO10">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00732c">
+            <rdf:Description rdf:about="#M_MAM00732c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM166090"/>
@@ -18552,10 +18551,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00732r" sboTerm="SBO:0000247" id="MAM00732r" name="3,5,3,5-tetraiodo-L-thyronine-beta-D-glucuronoside" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C21H18I4NO10">
+      <species metaid="M_MAM00732r" sboTerm="SBO:0000247" id="M_MAM00732r" name="3,5,3,5-tetraiodo-L-thyronine-beta-D-glucuronoside" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C21H18I4NO10">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00732r">
+            <rdf:Description rdf:about="#M_MAM00732r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM166090"/>
@@ -18566,10 +18565,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM00733c" sboTerm="SBO:0000247" id="MAM00733c" name="3,5,3-triiodo-L-thyronine-beta-D-glucuronoside" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C21H19I3NO10">
+      <species metaid="M_MAM00733c" sboTerm="SBO:0000247" id="M_MAM00733c" name="3,5,3-triiodo-L-thyronine-beta-D-glucuronoside" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C21H19I3NO10">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00733c">
+            <rdf:Description rdf:about="#M_MAM00733c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM166093"/>
@@ -18580,10 +18579,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM00733r" sboTerm="SBO:0000247" id="MAM00733r" name="3,5,3-triiodo-L-thyronine-beta-D-glucuronoside" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C21H19I3NO10">
+      <species metaid="M_MAM00733r" sboTerm="SBO:0000247" id="M_MAM00733r" name="3,5,3-triiodo-L-thyronine-beta-D-glucuronoside" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C21H19I3NO10">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00733r">
+            <rdf:Description rdf:about="#M_MAM00733r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM166093"/>
@@ -18594,10 +18593,10 @@
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-      <species metaid="MAM00734c" sboTerm="SBO:0000247" id="MAM00734c" name="3,5,3-triiodothyronine-4-sulfate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C15H11I3NO7S">
+      <species metaid="M_MAM00734c" sboTerm="SBO:0000247" id="M_MAM00734c" name="3,5,3-triiodothyronine-4-sulfate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C15H11I3NO7S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00734c">
+            <rdf:Description rdf:about="#M_MAM00734c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/triodthysuf"/>
@@ -18612,10 +18611,10 @@
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         </annotation>
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-      <species metaid="MAM00734e" sboTerm="SBO:0000247" id="MAM00734e" name="3,5,3-triiodothyronine-4-sulfate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C15H11I3NO7S">
+      <species metaid="M_MAM00734e" sboTerm="SBO:0000247" id="M_MAM00734e" name="3,5,3-triiodothyronine-4-sulfate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C15H11I3NO7S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00734e">
+            <rdf:Description rdf:about="#M_MAM00734e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/triodthysuf"/>
@@ -18630,10 +18629,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00735c" sboTerm="SBO:0000247" id="MAM00735c" name="3,5-dihydroxy-3,4-dihydro-1,4-benzothiazine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C11H14N2O4S">
+      <species metaid="M_MAM00735c" sboTerm="SBO:0000247" id="M_MAM00735c" name="3,5-dihydroxy-3,4-dihydro-1,4-benzothiazine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C11H14N2O4S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00735c">
+            <rdf:Description rdf:about="#M_MAM00735c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM482076"/>
@@ -18644,10 +18643,10 @@
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         </annotation>
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-      <species metaid="MAM00736c" sboTerm="SBO:0000247" id="MAM00736c" name="3,5-diiodo-L-thyronine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C15H13I2NO4">
+      <species metaid="M_MAM00736c" sboTerm="SBO:0000247" id="M_MAM00736c" name="3,5-diiodo-L-thyronine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C15H13I2NO4">
         <annotation>
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+            <rdf:Description rdf:about="#M_MAM00736c">
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@@ -18660,10 +18659,10 @@
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+      <species metaid="M_MAM00736r" sboTerm="SBO:0000247" id="M_MAM00736r" name="3,5-diiodo-L-thyronine" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C15H13I2NO4">
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@@ -18676,10 +18675,10 @@
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+      <species metaid="M_MAM00737c" sboTerm="SBO:0000247" id="M_MAM00737c" name="3,5-diiodo-L-thyronine-4-O-sulfate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C15H12I2NO7S">
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@@ -18690,10 +18689,10 @@
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+      <species metaid="M_MAM00738c" sboTerm="SBO:0000247" id="M_MAM00738c" name="3,5-diiodo-L-thyronine-beta-D-glucuronoside" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C21H20I2NO10">
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+            <rdf:Description rdf:about="#M_MAM00738c">
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@@ -18704,10 +18703,10 @@
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+      <species metaid="M_MAM00738r" sboTerm="SBO:0000247" id="M_MAM00738r" name="3,5-diiodo-L-thyronine-beta-D-glucuronoside" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C21H20I2NO10">
         <annotation>
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-            <rdf:Description rdf:about="#MAM00738r">
+            <rdf:Description rdf:about="#M_MAM00738r">
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@@ -18718,10 +18717,10 @@
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+      <species metaid="M_MAM00739c" sboTerm="SBO:0000247" id="M_MAM00739c" name="3,5-diiodo-L-tyrosine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H9I2NO3">
         <annotation>
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-            <rdf:Description rdf:about="#MAM00739c">
+            <rdf:Description rdf:about="#M_MAM00739c">
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@@ -18737,10 +18736,10 @@
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+      <species metaid="M_MAM00740m" sboTerm="SBO:0000247" id="M_MAM00740m" name="3,5-dioxo-12(R)-hydroxy-eicosa-(8E,10E,14Z)-trienoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H60N7O20P3S">
         <annotation>
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+            <rdf:Description rdf:about="#M_MAM00740m">
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@@ -18751,10 +18750,10 @@
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+      <species metaid="M_MAM00740x" sboTerm="SBO:0000247" id="M_MAM00740x" name="3,5-dioxo-12(R)-hydroxy-eicosa-(8E,10E,14Z)-trienoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H60N7O20P3S">
         <annotation>
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+            <rdf:Description rdf:about="#M_MAM00740x">
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@@ -18765,10 +18764,10 @@
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+      <species metaid="M_MAM00741m" sboTerm="SBO:0000247" id="M_MAM00741m" name="3,5-dioxo-12(S)-hydroxy-eicosa-(8E,10E,14Z)-trienoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H60N7O20P3S">
         <annotation>
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+            <rdf:Description rdf:about="#M_MAM00741m">
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@@ -18779,10 +18778,10 @@
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+      <species metaid="M_MAM00741x" sboTerm="SBO:0000247" id="M_MAM00741x" name="3,5-dioxo-12(S)-hydroxy-eicosa-(8E,10E,14Z)-trienoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H60N7O20P3S">
         <annotation>
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+            <rdf:Description rdf:about="#M_MAM00741x">
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@@ -18793,10 +18792,10 @@
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+      <species metaid="M_MAM00742c" sboTerm="SBO:0000247" id="M_MAM00742c" name="3,7,24THCA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C27H45O5">
         <annotation>
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-            <rdf:Description rdf:about="#MAM00742c">
+            <rdf:Description rdf:about="#M_MAM00742c">
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@@ -18807,10 +18806,10 @@
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+      <species metaid="M_MAM00742m" sboTerm="SBO:0000247" id="M_MAM00742m" name="3,7,24THCA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C27H45O5">
         <annotation>
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+            <rdf:Description rdf:about="#M_MAM00742m">
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@@ -18821,10 +18820,10 @@
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+      <species metaid="M_MAM00743c" sboTerm="SBO:0000247" id="M_MAM00743c" name="3,7,24THCA-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C48H76N7O20P3S">
         <annotation>
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-            <rdf:Description rdf:about="#MAM00743c">
+            <rdf:Description rdf:about="#M_MAM00743c">
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@@ -18835,10 +18834,10 @@
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+      <species metaid="M_MAM00743x" sboTerm="SBO:0000247" id="M_MAM00743x" name="3,7,24THCA-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C48H76N7O20P3S">
         <annotation>
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+            <rdf:Description rdf:about="#M_MAM00743x">
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@@ -18849,10 +18848,10 @@
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+      <species metaid="M_MAM00744c" sboTerm="SBO:0000247" id="M_MAM00744c" name="3,8-LD1" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C66H111N4O38RCO">
         <annotation>
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-            <rdf:Description rdf:about="#MAM00744c">
+            <rdf:Description rdf:about="#M_MAM00744c">
               <bqbiol:is>
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@@ -18865,10 +18864,10 @@
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+      <species metaid="M_MAM00744g" sboTerm="SBO:0000247" id="M_MAM00744g" name="3,8-LD1" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C66H111N4O38RCO">
         <annotation>
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+            <rdf:Description rdf:about="#M_MAM00744g">
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                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/acnacngal14acglcgalgluside_hs"/>
@@ -18881,10 +18880,10 @@
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+      <species metaid="M_MAM00744e" sboTerm="SBO:0000247" id="M_MAM00744e" name="3,8-LD1" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C66H111N4O38RCO">
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-            <rdf:Description rdf:about="#MAM00744e">
+            <rdf:Description rdf:about="#M_MAM00744e">
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@@ -18897,10 +18896,10 @@
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+      <species metaid="M_MAM00745c" sboTerm="SBO:0000247" id="M_MAM00745c" name="3alpha,12alpha-dihydroxy-5beta-cholanate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H39O4">
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-            <rdf:Description rdf:about="#MAM00745c">
+            <rdf:Description rdf:about="#M_MAM00745c">
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@@ -18916,10 +18915,10 @@
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+      <species metaid="M_MAM00745r" sboTerm="SBO:0000247" id="M_MAM00745r" name="3alpha,12alpha-dihydroxy-5beta-cholanate" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H39O4">
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-            <rdf:Description rdf:about="#MAM00745r">
+            <rdf:Description rdf:about="#M_MAM00745r">
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@@ -18935,10 +18934,10 @@
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+      <species metaid="M_MAM00746m" sboTerm="SBO:0000247" id="M_MAM00746m" name="3alpha,7alpha,12alpha,24(S)-tetrahydroxy-5beta-cholestan-27-al" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H46O5">
         <annotation>
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-            <rdf:Description rdf:about="#MAM00746m">
+            <rdf:Description rdf:about="#M_MAM00746m">
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@@ -18951,10 +18950,10 @@
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+      <species metaid="M_MAM00747r" sboTerm="SBO:0000247" id="M_MAM00747r" name="3alpha,7alpha,12alpha,25-tetrahydroxy-5beta-cholestane-24-one" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H46O5">
         <annotation>
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-            <rdf:Description rdf:about="#MAM00747r">
+            <rdf:Description rdf:about="#M_MAM00747r">
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@@ -18966,10 +18965,10 @@
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+      <species metaid="M_MAM00748m" sboTerm="SBO:0000247" id="M_MAM00748m" name="3alpha,7alpha,12alpha-trihydroxy-5beta-24-oxocholestanoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C48H74N7O21P3S">
         <annotation>
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-            <rdf:Description rdf:about="#MAM00748m">
+            <rdf:Description rdf:about="#M_MAM00748m">
               <bqbiol:is>
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@@ -18987,10 +18986,10 @@
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+      <species metaid="M_MAM00748x" sboTerm="SBO:0000247" id="M_MAM00748x" name="3alpha,7alpha,12alpha-trihydroxy-5beta-24-oxocholestanoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C48H74N7O21P3S">
         <annotation>
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-            <rdf:Description rdf:about="#MAM00748x">
+            <rdf:Description rdf:about="#M_MAM00748x">
               <bqbiol:is>
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                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/cholcoaone"/>
@@ -19008,10 +19007,10 @@
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+      <species metaid="M_MAM00749m" sboTerm="SBO:0000247" id="M_MAM00749m" name="3alpha,7alpha,12alpha-trihydroxy-5beta-cholest-24-enoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C48H74N7O20P3S">
         <annotation>
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-            <rdf:Description rdf:about="#MAM00749m">
+            <rdf:Description rdf:about="#M_MAM00749m">
               <bqbiol:is>
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@@ -19029,10 +19028,10 @@
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+      <species metaid="M_MAM00749x" sboTerm="SBO:0000247" id="M_MAM00749x" name="3alpha,7alpha,12alpha-trihydroxy-5beta-cholest-24-enoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C48H74N7O20P3S">
         <annotation>
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-            <rdf:Description rdf:about="#MAM00749x">
+            <rdf:Description rdf:about="#M_MAM00749x">
               <bqbiol:is>
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@@ -19050,10 +19049,10 @@
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+      <species metaid="M_MAM00750c" sboTerm="SBO:0000247" id="M_MAM00750c" name="3alpha,7alpha,12alpha-trihydroxy-5beta-cholestan-26-al" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H46O4">
         <annotation>
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-            <rdf:Description rdf:about="#MAM00750c">
+            <rdf:Description rdf:about="#M_MAM00750c">
               <bqbiol:is>
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                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/thcholst"/>
@@ -19072,10 +19071,10 @@
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-      <species metaid="MAM00750m" sboTerm="SBO:0000247" id="MAM00750m" name="3alpha,7alpha,12alpha-trihydroxy-5beta-cholestan-26-al" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H46O4">
+      <species metaid="M_MAM00750m" sboTerm="SBO:0000247" id="M_MAM00750m" name="3alpha,7alpha,12alpha-trihydroxy-5beta-cholestan-26-al" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H46O4">
         <annotation>
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-            <rdf:Description rdf:about="#MAM00750m">
+            <rdf:Description rdf:about="#M_MAM00750m">
               <bqbiol:is>
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                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/thcholst"/>
@@ -19094,10 +19093,10 @@
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-      <species metaid="MAM00751m" sboTerm="SBO:0000247" id="MAM00751m" name="3alpha,7alpha,12alpha-trihydroxy-5beta-cholestan-27-al" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H46O4">
+      <species metaid="M_MAM00751m" sboTerm="SBO:0000247" id="M_MAM00751m" name="3alpha,7alpha,12alpha-trihydroxy-5beta-cholestan-27-al" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H46O4">
         <annotation>
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-            <rdf:Description rdf:about="#MAM00751m">
+            <rdf:Description rdf:about="#M_MAM00751m">
               <bqbiol:is>
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                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:48940"/>
@@ -19111,10 +19110,10 @@
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+      <species metaid="M_MAM00752c" sboTerm="SBO:0000247" id="M_MAM00752c" name="3alpha,7alpha,12alpha-trihydroxy-5beta-cholestanate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C27H45O5">
         <annotation>
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-            <rdf:Description rdf:about="#MAM00752c">
+            <rdf:Description rdf:about="#M_MAM00752c">
               <bqbiol:is>
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                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/thcholstoic"/>
@@ -19132,10 +19131,10 @@
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-      <species metaid="MAM00752m" sboTerm="SBO:0000247" id="MAM00752m" name="3alpha,7alpha,12alpha-trihydroxy-5beta-cholestanate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C27H45O5">
+      <species metaid="M_MAM00752m" sboTerm="SBO:0000247" id="M_MAM00752m" name="3alpha,7alpha,12alpha-trihydroxy-5beta-cholestanate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C27H45O5">
         <annotation>
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-            <rdf:Description rdf:about="#MAM00752m">
+            <rdf:Description rdf:about="#M_MAM00752m">
               <bqbiol:is>
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                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/thcholstoic"/>
@@ -19153,10 +19152,10 @@
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+      <species metaid="M_MAM00752x" sboTerm="SBO:0000247" id="M_MAM00752x" name="3alpha,7alpha,12alpha-trihydroxy-5beta-cholestanate" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C27H45O5">
         <annotation>
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-            <rdf:Description rdf:about="#MAM00752x">
+            <rdf:Description rdf:about="#M_MAM00752x">
               <bqbiol:is>
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                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/thcholstoic"/>
@@ -19174,10 +19173,10 @@
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-      <species metaid="MAM00752r" sboTerm="SBO:0000247" id="MAM00752r" name="3alpha,7alpha,12alpha-trihydroxy-5beta-cholestanate" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C27H45O5">
+      <species metaid="M_MAM00752r" sboTerm="SBO:0000247" id="M_MAM00752r" name="3alpha,7alpha,12alpha-trihydroxy-5beta-cholestanate" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C27H45O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00752r">
+            <rdf:Description rdf:about="#M_MAM00752r">
               <bqbiol:is>
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                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/thcholstoic"/>
@@ -19195,10 +19194,10 @@
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-      <species metaid="MAM00753m" sboTerm="SBO:0000247" id="MAM00753m" name="3alpha,7alpha,24(S)-trihydroxy-5beta-cholestan-27-al" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H46O4">
+      <species metaid="M_MAM00753m" sboTerm="SBO:0000247" id="M_MAM00753m" name="3alpha,7alpha,24(S)-trihydroxy-5beta-cholestan-27-al" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H46O4">
         <annotation>
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-            <rdf:Description rdf:about="#MAM00753m">
+            <rdf:Description rdf:about="#M_MAM00753m">
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                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/LMST04030154"/>
@@ -19211,10 +19210,10 @@
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+      <species metaid="M_MAM00754x" sboTerm="SBO:0000247" id="M_MAM00754x" name="3alpha,7alpha-dihydroxy-24-oxo-5beta-cholestanoyl coa" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C48H74N7O20P3S">
         <annotation>
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-            <rdf:Description rdf:about="#MAM00754x">
+            <rdf:Description rdf:about="#M_MAM00754x">
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                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:28533"/>
@@ -19231,10 +19230,10 @@
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-      <species metaid="MAM00755x" sboTerm="SBO:0000247" id="MAM00755x" name="3alpha,7alpha-dihydroxy-5beta-cholest-24-enoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C48H74N7O19P3S">
+      <species metaid="M_MAM00755x" sboTerm="SBO:0000247" id="M_MAM00755x" name="3alpha,7alpha-dihydroxy-5beta-cholest-24-enoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C48H74N7O19P3S">
         <annotation>
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-            <rdf:Description rdf:about="#MAM00755x">
+            <rdf:Description rdf:about="#M_MAM00755x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dhcholoylcoa"/>
@@ -19251,10 +19250,10 @@
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+      <species metaid="M_MAM00756c" sboTerm="SBO:0000247" id="M_MAM00756c" name="3alpha,7alpha-dihydroxy-5beta-cholestan-26-al" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H46O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00756c">
+            <rdf:Description rdf:about="#M_MAM00756c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/xol7ah2al"/>
@@ -19272,10 +19271,10 @@
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+      <species metaid="M_MAM00756m" sboTerm="SBO:0000247" id="M_MAM00756m" name="3alpha,7alpha-dihydroxy-5beta-cholestan-26-al" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H46O3">
         <annotation>
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-            <rdf:Description rdf:about="#MAM00756m">
+            <rdf:Description rdf:about="#M_MAM00756m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/xol7ah2al"/>
@@ -19293,10 +19292,10 @@
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-      <species metaid="MAM00757m" sboTerm="SBO:0000247" id="MAM00757m" name="3alpha,7alpha-dihydroxy-5beta-cholestan-27-al" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H46O3">
+      <species metaid="M_MAM00757m" sboTerm="SBO:0000247" id="M_MAM00757m" name="3alpha,7alpha-dihydroxy-5beta-cholestan-27-al" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H46O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00757m">
+            <rdf:Description rdf:about="#M_MAM00757m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM162871"/>
@@ -19307,10 +19306,10 @@
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-      <species metaid="MAM00758c" sboTerm="SBO:0000247" id="MAM00758c" name="3alpha,7alpha-dihydroxy-5beta-cholestanate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C27H45O4">
+      <species metaid="M_MAM00758c" sboTerm="SBO:0000247" id="M_MAM00758c" name="3alpha,7alpha-dihydroxy-5beta-cholestanate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C27H45O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00758c">
+            <rdf:Description rdf:about="#M_MAM00758c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dhcholestanate"/>
@@ -19328,10 +19327,10 @@
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-      <species metaid="MAM00758m" sboTerm="SBO:0000247" id="MAM00758m" name="3alpha,7alpha-dihydroxy-5beta-cholestanate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C27H45O4">
+      <species metaid="M_MAM00758m" sboTerm="SBO:0000247" id="M_MAM00758m" name="3alpha,7alpha-dihydroxy-5beta-cholestanate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C27H45O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00758m">
+            <rdf:Description rdf:about="#M_MAM00758m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dhcholestanate"/>
@@ -19349,10 +19348,10 @@
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-      <species metaid="MAM00758x" sboTerm="SBO:0000247" id="MAM00758x" name="3alpha,7alpha-dihydroxy-5beta-cholestanate" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C27H45O4">
+      <species metaid="M_MAM00758x" sboTerm="SBO:0000247" id="M_MAM00758x" name="3alpha,7alpha-dihydroxy-5beta-cholestanate" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C27H45O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00758x">
+            <rdf:Description rdf:about="#M_MAM00758x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dhcholestanate"/>
@@ -19370,10 +19369,10 @@
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         </annotation>
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-      <species metaid="MAM00758r" sboTerm="SBO:0000247" id="MAM00758r" name="3alpha,7alpha-dihydroxy-5beta-cholestanate" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C27H45O4">
+      <species metaid="M_MAM00758r" sboTerm="SBO:0000247" id="M_MAM00758r" name="3alpha,7alpha-dihydroxy-5beta-cholestanate" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C27H45O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00758r">
+            <rdf:Description rdf:about="#M_MAM00758r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dhcholestanate"/>
@@ -19391,10 +19390,10 @@
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         </annotation>
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-      <species metaid="MAM00759c" sboTerm="SBO:0000247" id="MAM00759c" name="3alpha-hydroxy-5alpha-pregnan-20-one" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H34O2">
+      <species metaid="M_MAM00759c" sboTerm="SBO:0000247" id="M_MAM00759c" name="3alpha-hydroxy-5alpha-pregnan-20-one" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H34O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00759c">
+            <rdf:Description rdf:about="#M_MAM00759c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C13712"/>
@@ -19407,10 +19406,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00760c" sboTerm="SBO:0000247" id="MAM00760c" name="3-amino-propanal" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C3H8NO">
+      <species metaid="M_MAM00760c" sboTerm="SBO:0000247" id="M_MAM00760c" name="3-amino-propanal" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C3H8NO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00760c">
+            <rdf:Description rdf:about="#M_MAM00760c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:58374"/>
@@ -19424,10 +19423,10 @@
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         </annotation>
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-      <species metaid="MAM00761m" sboTerm="SBO:0000247" id="MAM00761m" name="3beta,7alpha-dihydroxy-5-cholestenoate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C27H43O4">
+      <species metaid="M_MAM00761m" sboTerm="SBO:0000247" id="M_MAM00761m" name="3beta,7alpha-dihydroxy-5-cholestenoate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C27H43O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00761m">
+            <rdf:Description rdf:about="#M_MAM00761m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM6853"/>
@@ -19439,10 +19438,10 @@
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         </annotation>
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-      <species metaid="MAM00762g" sboTerm="SBO:0000247" id="MAM00762g" name="3-beta-D-glucuronosyl-3-beta-D-galactosyl-4-beta-D-galactosyl-O-beta-D-xylosylprotein" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C23H36O20X">
+      <species metaid="M_MAM00762g" sboTerm="SBO:0000247" id="M_MAM00762g" name="3-beta-D-glucuronosyl-3-beta-D-galactosyl-4-beta-D-galactosyl-O-beta-D-xylosylprotein" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C23H36O20X">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00762g">
+            <rdf:Description rdf:about="#M_MAM00762g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/cs_hs_linkage"/>
@@ -19456,10 +19455,10 @@
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         </annotation>
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-      <species metaid="MAM00763m" sboTerm="SBO:0000247" id="MAM00763m" name="3beta-hydroxy-5-cholestenal" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H44O2">
+      <species metaid="M_MAM00763m" sboTerm="SBO:0000247" id="M_MAM00763m" name="3beta-hydroxy-5-cholestenal" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H44O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00763m">
+            <rdf:Description rdf:about="#M_MAM00763m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM163194"/>
@@ -19471,10 +19470,10 @@
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-      <species metaid="MAM00764m" sboTerm="SBO:0000247" id="MAM00764m" name="3beta-hydroxy-5-cholestene-27-oate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C27H43O3">
+      <species metaid="M_MAM00764m" sboTerm="SBO:0000247" id="M_MAM00764m" name="3beta-hydroxy-5-cholestene-27-oate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C27H43O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00764m">
+            <rdf:Description rdf:about="#M_MAM00764m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM163195"/>
@@ -19485,10 +19484,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM00765m" sboTerm="SBO:0000247" id="MAM00765m" name="3-carboxy-1-hydroxypropyl-ThPP" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C16H21N4O10P2S">
+      <species metaid="M_MAM00765m" sboTerm="SBO:0000247" id="M_MAM00765m" name="3-carboxy-1-hydroxypropyl-ThPP" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C16H21N4O10P2S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00765m">
+            <rdf:Description rdf:about="#M_MAM00765m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:1463"/>
@@ -19502,10 +19501,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM00766c" sboTerm="SBO:0000247" id="MAM00766c" name="3-carboxy-alpha-chromanol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C16H21O4">
+      <species metaid="M_MAM00766c" sboTerm="SBO:0000247" id="M_MAM00766c" name="3-carboxy-alpha-chromanol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C16H21O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00766c">
+            <rdf:Description rdf:about="#M_MAM00766c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM163170"/>
@@ -19517,10 +19516,10 @@
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-      <species metaid="MAM00766m" sboTerm="SBO:0000247" id="MAM00766m" name="3-carboxy-alpha-chromanol" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C16H21O4">
+      <species metaid="M_MAM00766m" sboTerm="SBO:0000247" id="M_MAM00766m" name="3-carboxy-alpha-chromanol" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C16H21O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00766m">
+            <rdf:Description rdf:about="#M_MAM00766m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM163170"/>
@@ -19532,10 +19531,10 @@
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-      <species metaid="MAM00767m" sboTerm="SBO:0000247" id="MAM00767m" name="3-decaprenyl-4-hydroxybenzoate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C57H85O3">
+      <species metaid="M_MAM00767m" sboTerm="SBO:0000247" id="M_MAM00767m" name="3-decaprenyl-4-hydroxybenzoate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C57H85O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00767m">
+            <rdf:Description rdf:about="#M_MAM00767m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/3dphb"/>
@@ -19548,10 +19547,10 @@
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-      <species metaid="MAM00768c" sboTerm="SBO:0000247" id="MAM00768c" name="3-dehydro-L-gulonate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H9O7">
+      <species metaid="M_MAM00768c" sboTerm="SBO:0000247" id="M_MAM00768c" name="3-dehydro-L-gulonate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H9O7">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00768c">
+            <rdf:Description rdf:about="#M_MAM00768c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/3dhguln"/>
@@ -19567,10 +19566,10 @@
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         </annotation>
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-      <species metaid="MAM00769c" sboTerm="SBO:0000247" id="MAM00769c" name="3-dehydrosphinganine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C18H38NO2">
+      <species metaid="M_MAM00769c" sboTerm="SBO:0000247" id="M_MAM00769c" name="3-dehydrosphinganine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C18H38NO2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00769c">
+            <rdf:Description rdf:about="#M_MAM00769c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/3dsphgn"/>
@@ -19584,10 +19583,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM00770m" sboTerm="SBO:0000247" id="MAM00770m" name="3-demethylubiquinol-10" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C58H90O4">
+      <species metaid="M_MAM00770m" sboTerm="SBO:0000247" id="M_MAM00770m" name="3-demethylubiquinol-10" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C58H90O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00770m">
+            <rdf:Description rdf:about="#M_MAM00770m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM36398"/>
@@ -19598,10 +19597,10 @@
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-      <species metaid="MAM00771c" sboTerm="SBO:0000247" id="MAM00771c" name="3-deoxy-D-glycero-D-galacto-2-nonulosonic acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C9H15O9">
+      <species metaid="M_MAM00771c" sboTerm="SBO:0000247" id="M_MAM00771c" name="3-deoxy-D-glycero-D-galacto-2-nonulosonic acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C9H15O9">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00771c">
+            <rdf:Description rdf:about="#M_MAM00771c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/kdn"/>
@@ -19615,10 +19614,10 @@
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-      <species metaid="MAM00771e" sboTerm="SBO:0000247" id="MAM00771e" name="3-deoxy-D-glycero-D-galacto-2-nonulosonic acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C9H15O9">
+      <species metaid="M_MAM00771e" sboTerm="SBO:0000247" id="M_MAM00771e" name="3-deoxy-D-glycero-D-galacto-2-nonulosonic acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C9H15O9">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00771e">
+            <rdf:Description rdf:about="#M_MAM00771e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/kdn"/>
@@ -19632,10 +19631,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM00772c" sboTerm="SBO:0000247" id="MAM00772c" name="3-deoxy-D-glycero-D-galacto-2-nonulosonic acid-9-phosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C9H14O12P">
+      <species metaid="M_MAM00772c" sboTerm="SBO:0000247" id="M_MAM00772c" name="3-deoxy-D-glycero-D-galacto-2-nonulosonic acid-9-phosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C9H14O12P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00772c">
+            <rdf:Description rdf:about="#M_MAM00772c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/kdnp"/>
@@ -19647,10 +19646,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00773m" sboTerm="SBO:0000247" id="MAM00773m" name="3-hydroxy-2,6-dimethyl-5-methylene-heptanoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C31H48N7O18P3S">
+      <species metaid="M_MAM00773m" sboTerm="SBO:0000247" id="M_MAM00773m" name="3-hydroxy-2,6-dimethyl-5-methylene-heptanoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C31H48N7O18P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00773m">
+            <rdf:Description rdf:about="#M_MAM00773m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/3h26dm5coa"/>
@@ -19665,10 +19664,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00773x" sboTerm="SBO:0000247" id="MAM00773x" name="3-hydroxy-2,6-dimethyl-5-methylene-heptanoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C31H48N7O18P3S">
+      <species metaid="M_MAM00773x" sboTerm="SBO:0000247" id="M_MAM00773x" name="3-hydroxy-2,6-dimethyl-5-methylene-heptanoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C31H48N7O18P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00773x">
+            <rdf:Description rdf:about="#M_MAM00773x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/3h26dm5coa"/>
@@ -19683,10 +19682,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00775c" sboTerm="SBO:0000247" id="MAM00775c" name="3-hydroxyanthranilate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H7NO3">
+      <species metaid="M_MAM00775c" sboTerm="SBO:0000247" id="M_MAM00775c" name="3-hydroxyanthranilate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H7NO3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00775c">
+            <rdf:Description rdf:about="#M_MAM00775c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/3hanthrn"/>
@@ -19701,10 +19700,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00776c" sboTerm="SBO:0000247" id="MAM00776c" name="3-hydroxydocosanoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C43H74N7O18P3S">
+      <species metaid="M_MAM00776c" sboTerm="SBO:0000247" id="M_MAM00776c" name="3-hydroxydocosanoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C43H74N7O18P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00776c">
+            <rdf:Description rdf:about="#M_MAM00776c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM162568"/>
@@ -19716,10 +19715,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00776m" sboTerm="SBO:0000247" id="MAM00776m" name="3-hydroxydocosanoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C43H74N7O18P3S">
+      <species metaid="M_MAM00776m" sboTerm="SBO:0000247" id="M_MAM00776m" name="3-hydroxydocosanoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C43H74N7O18P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00776m">
+            <rdf:Description rdf:about="#M_MAM00776m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM162568"/>
@@ -19731,10 +19730,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM00776x" sboTerm="SBO:0000247" id="MAM00776x" name="3-hydroxydocosanoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C43H74N7O18P3S">
+      <species metaid="M_MAM00776x" sboTerm="SBO:0000247" id="M_MAM00776x" name="3-hydroxydocosanoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C43H74N7O18P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00776x">
+            <rdf:Description rdf:about="#M_MAM00776x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM162568"/>
@@ -19746,10 +19745,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00777c" sboTerm="SBO:0000247" id="MAM00777c" name="3-hydroxyeicosanoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H70N7O18P3S">
+      <species metaid="M_MAM00777c" sboTerm="SBO:0000247" id="M_MAM00777c" name="3-hydroxyeicosanoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H70N7O18P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00777c">
+            <rdf:Description rdf:about="#M_MAM00777c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM146349"/>
@@ -19761,10 +19760,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM00777m" sboTerm="SBO:0000247" id="MAM00777m" name="3-hydroxyeicosanoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H70N7O18P3S">
+      <species metaid="M_MAM00777m" sboTerm="SBO:0000247" id="M_MAM00777m" name="3-hydroxyeicosanoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H70N7O18P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00777m">
+            <rdf:Description rdf:about="#M_MAM00777m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM146349"/>
@@ -19776,10 +19775,10 @@
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       </species>
-      <species metaid="MAM00777x" sboTerm="SBO:0000247" id="MAM00777x" name="3-hydroxyeicosanoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H70N7O18P3S">
+      <species metaid="M_MAM00777x" sboTerm="SBO:0000247" id="M_MAM00777x" name="3-hydroxyeicosanoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H70N7O18P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00777x">
+            <rdf:Description rdf:about="#M_MAM00777x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM146349"/>
@@ -19791,10 +19790,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM00778c" sboTerm="SBO:0000247" id="MAM00778c" name="3-hydroxyheneicosanoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C42H72N7O18P3S">
+      <species metaid="M_MAM00778c" sboTerm="SBO:0000247" id="M_MAM00778c" name="3-hydroxyheneicosanoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C42H72N7O18P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00778c">
+            <rdf:Description rdf:about="#M_MAM00778c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M00778"/>
@@ -19804,10 +19803,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00778m" sboTerm="SBO:0000247" id="MAM00778m" name="3-hydroxyheneicosanoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C42H72N7O18P3S">
+      <species metaid="M_MAM00778m" sboTerm="SBO:0000247" id="M_MAM00778m" name="3-hydroxyheneicosanoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C42H72N7O18P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00778m">
+            <rdf:Description rdf:about="#M_MAM00778m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M00778"/>
@@ -19817,10 +19816,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00779c" sboTerm="SBO:0000247" id="MAM00779c" name="3-hydroxyheptadecanoyl-[ACP]" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C28H53N2O9PRS">
+      <species metaid="M_MAM00779c" sboTerm="SBO:0000247" id="M_MAM00779c" name="3-hydroxyheptadecanoyl-[ACP]" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C28H53N2O9PRS">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00779c">
+            <rdf:Description rdf:about="#M_MAM00779c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M00779"/>
@@ -19830,10 +19829,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM00780m" sboTerm="SBO:0000247" id="MAM00780m" name="3-hydroxyheptadecanoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C38H64N7O18P3S">
+      <species metaid="M_MAM00780m" sboTerm="SBO:0000247" id="M_MAM00780m" name="3-hydroxyheptadecanoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C38H64N7O18P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00780m">
+            <rdf:Description rdf:about="#M_MAM00780m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M00780"/>
@@ -19843,10 +19842,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM00781c" sboTerm="SBO:0000247" id="MAM00781c" name="3-hydroxyheptanoyl-[ACP]" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H33N2O9PRS">
+      <species metaid="M_MAM00781c" sboTerm="SBO:0000247" id="M_MAM00781c" name="3-hydroxyheptanoyl-[ACP]" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H33N2O9PRS">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00781c">
+            <rdf:Description rdf:about="#M_MAM00781c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M00781"/>
@@ -19856,10 +19855,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00782m" sboTerm="SBO:0000247" id="MAM00782m" name="3-hydroxyheptanoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C28H44N7O18P3S">
+      <species metaid="M_MAM00782m" sboTerm="SBO:0000247" id="M_MAM00782m" name="3-hydroxyheptanoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C28H44N7O18P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00782m">
+            <rdf:Description rdf:about="#M_MAM00782m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM147785"/>
@@ -19870,10 +19869,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00783c" sboTerm="SBO:0000247" id="MAM00783c" name="3-hydroxyhexacosanoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C47H82N7O18P3S">
+      <species metaid="M_MAM00783c" sboTerm="SBO:0000247" id="M_MAM00783c" name="3-hydroxyhexacosanoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C47H82N7O18P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00783c">
+            <rdf:Description rdf:about="#M_MAM00783c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM1171"/>
@@ -19884,10 +19883,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00783x" sboTerm="SBO:0000247" id="MAM00783x" name="3-hydroxyhexacosanoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C47H82N7O18P3S">
+      <species metaid="M_MAM00783x" sboTerm="SBO:0000247" id="M_MAM00783x" name="3-hydroxyhexacosanoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C47H82N7O18P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00783x">
+            <rdf:Description rdf:about="#M_MAM00783x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM1171"/>
@@ -19898,10 +19897,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00784m" sboTerm="SBO:0000247" id="MAM00784m" name="3-hydroxyisobutyrate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C4H7O3">
+      <species metaid="M_MAM00784m" sboTerm="SBO:0000247" id="M_MAM00784m" name="3-hydroxyisobutyrate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C4H7O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00784m">
+            <rdf:Description rdf:about="#M_MAM00784m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/3hmp"/>
@@ -19917,10 +19916,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00785m" sboTerm="SBO:0000247" id="MAM00785m" name="3-hydroxyisobutyryl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C25H38N7O18P3S">
+      <species metaid="M_MAM00785m" sboTerm="SBO:0000247" id="M_MAM00785m" name="3-hydroxyisobutyryl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C25H38N7O18P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00785m">
+            <rdf:Description rdf:about="#M_MAM00785m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/3hibutcoa"/>
@@ -19936,10 +19935,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00786c" sboTerm="SBO:0000247" id="MAM00786c" name="3-hydroxykynurenamine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C9H13N2O2">
+      <species metaid="M_MAM00786c" sboTerm="SBO:0000247" id="M_MAM00786c" name="3-hydroxykynurenamine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C9H13N2O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00786c">
+            <rdf:Description rdf:about="#M_MAM00786c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/3hxkynam"/>
@@ -19953,10 +19952,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00787c" sboTerm="SBO:0000247" id="MAM00787c" name="3-hydroxykynurenine-O-beta-D-glucoside" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C16H22N2O9">
+      <species metaid="M_MAM00787c" sboTerm="SBO:0000247" id="M_MAM00787c" name="3-hydroxykynurenine-O-beta-D-glucoside" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C16H22N2O9">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00787c">
+            <rdf:Description rdf:about="#M_MAM00787c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM163184"/>
@@ -19968,10 +19967,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00788c" sboTerm="SBO:0000247" id="MAM00788c" name="3-hydroxy-L-kynurenine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H12N2O4">
+      <species metaid="M_MAM00788c" sboTerm="SBO:0000247" id="M_MAM00788c" name="3-hydroxy-L-kynurenine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H12N2O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00788c">
+            <rdf:Description rdf:about="#M_MAM00788c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hLkynr"/>
@@ -19988,10 +19987,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00789c" sboTerm="SBO:0000247" id="MAM00789c" name="3-hydroxy-N6,N6,N6-trimethyl-L-lysine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H20N2O3">
+      <species metaid="M_MAM00789c" sboTerm="SBO:0000247" id="M_MAM00789c" name="3-hydroxy-N6,N6,N6-trimethyl-L-lysine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H20N2O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00789c">
+            <rdf:Description rdf:about="#M_MAM00789c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/3htmelys"/>
@@ -20007,10 +20006,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00790c" sboTerm="SBO:0000247" id="MAM00790c" name="3-hydroxynonadecanoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C40H68N7O18P3S">
+      <species metaid="M_MAM00790c" sboTerm="SBO:0000247" id="M_MAM00790c" name="3-hydroxynonadecanoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C40H68N7O18P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00790c">
+            <rdf:Description rdf:about="#M_MAM00790c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M00790"/>
@@ -20020,10 +20019,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00790m" sboTerm="SBO:0000247" id="MAM00790m" name="3-hydroxynonadecanoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C40H68N7O18P3S">
+      <species metaid="M_MAM00790m" sboTerm="SBO:0000247" id="M_MAM00790m" name="3-hydroxynonadecanoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C40H68N7O18P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00790m">
+            <rdf:Description rdf:about="#M_MAM00790m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M00790"/>
@@ -20033,10 +20032,10 @@
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+      <species metaid="M_MAM00791c" sboTerm="SBO:0000247" id="M_MAM00791c" name="3-hydroxynonanoyl-[ACP]" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H37N2O9PRS">
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+            <rdf:Description rdf:about="#M_MAM00791c">
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@@ -20046,10 +20045,10 @@
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+      <species metaid="M_MAM00792m" sboTerm="SBO:0000247" id="M_MAM00792m" name="3-hydroxynonanoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C30H48N7O18P3S">
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+            <rdf:Description rdf:about="#M_MAM00792m">
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@@ -20059,10 +20058,10 @@
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+      <species metaid="M_MAM00793c" sboTerm="SBO:0000247" id="M_MAM00793c" name="3-hydroxyoctadecanoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C39H66N7O18P3S">
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-            <rdf:Description rdf:about="#MAM00793c">
+            <rdf:Description rdf:about="#M_MAM00793c">
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@@ -20074,10 +20073,10 @@
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+      <species metaid="M_MAM00793m" sboTerm="SBO:0000247" id="M_MAM00793m" name="3-hydroxyoctadecanoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C39H66N7O18P3S">
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-            <rdf:Description rdf:about="#MAM00793m">
+            <rdf:Description rdf:about="#M_MAM00793m">
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@@ -20089,10 +20088,10 @@
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+      <species metaid="M_MAM00793x" sboTerm="SBO:0000247" id="M_MAM00793x" name="3-hydroxyoctadecanoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C39H66N7O18P3S">
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-            <rdf:Description rdf:about="#MAM00793x">
+            <rdf:Description rdf:about="#M_MAM00793x">
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                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM1309"/>
@@ -20104,10 +20103,10 @@
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-      <species metaid="MAM00794c" sboTerm="SBO:0000247" id="MAM00794c" name="3-hydroxypentadecanoyl-[ACP]" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C26H49N2O9PRS">
+      <species metaid="M_MAM00794c" sboTerm="SBO:0000247" id="M_MAM00794c" name="3-hydroxypentadecanoyl-[ACP]" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C26H49N2O9PRS">
         <annotation>
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-            <rdf:Description rdf:about="#MAM00794c">
+            <rdf:Description rdf:about="#M_MAM00794c">
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                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M00794"/>
@@ -20117,10 +20116,10 @@
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+      <species metaid="M_MAM00795m" sboTerm="SBO:0000247" id="M_MAM00795m" name="3-hydroxypentadecanoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C36H60N7O18P3S">
         <annotation>
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-            <rdf:Description rdf:about="#MAM00795m">
+            <rdf:Description rdf:about="#M_MAM00795m">
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@@ -20130,10 +20129,10 @@
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+      <species metaid="M_MAM00796c" sboTerm="SBO:0000247" id="M_MAM00796c" name="3-hydroxypentanoyl-[ACP]" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C16H29N2O9PRS">
         <annotation>
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-            <rdf:Description rdf:about="#MAM00796c">
+            <rdf:Description rdf:about="#M_MAM00796c">
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@@ -20143,10 +20142,10 @@
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+      <species metaid="M_MAM00797m" sboTerm="SBO:0000247" id="M_MAM00797m" name="3-hydroxypentanoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C26H40N7O18P3S">
         <annotation>
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-            <rdf:Description rdf:about="#MAM00797m">
+            <rdf:Description rdf:about="#M_MAM00797m">
               <bqbiol:is>
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@@ -20157,10 +20156,10 @@
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-      <species metaid="MAM00798x" sboTerm="SBO:0000247" id="MAM00798x" name="3-hydroxypristanoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C40H68N7O18P3S">
+      <species metaid="M_MAM00798x" sboTerm="SBO:0000247" id="M_MAM00798x" name="3-hydroxypristanoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C40H68N7O18P3S">
         <annotation>
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-            <rdf:Description rdf:about="#MAM00798x">
+            <rdf:Description rdf:about="#M_MAM00798x">
               <bqbiol:is>
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@@ -20171,10 +20170,10 @@
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-      <species metaid="MAM00799m" sboTerm="SBO:0000247" id="MAM00799m" name="3-hydroxypropionyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C24H36N7O18P3S">
+      <species metaid="M_MAM00799m" sboTerm="SBO:0000247" id="M_MAM00799m" name="3-hydroxypropionyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C24H36N7O18P3S">
         <annotation>
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-            <rdf:Description rdf:about="#MAM00799m">
+            <rdf:Description rdf:about="#M_MAM00799m">
               <bqbiol:is>
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                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/3hpcoa"/>
@@ -20189,10 +20188,10 @@
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-      <species metaid="MAM00800c" sboTerm="SBO:0000247" id="MAM00800c" name="3-hydroxytetracosanoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C45H78N7O18P3S">
+      <species metaid="M_MAM00800c" sboTerm="SBO:0000247" id="M_MAM00800c" name="3-hydroxytetracosanoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C45H78N7O18P3S">
         <annotation>
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-            <rdf:Description rdf:about="#MAM00800c">
+            <rdf:Description rdf:about="#M_MAM00800c">
               <bqbiol:is>
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                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM163185"/>
@@ -20204,10 +20203,10 @@
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-      <species metaid="MAM00800x" sboTerm="SBO:0000247" id="MAM00800x" name="3-hydroxytetracosanoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C45H78N7O18P3S">
+      <species metaid="M_MAM00800x" sboTerm="SBO:0000247" id="M_MAM00800x" name="3-hydroxytetracosanoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C45H78N7O18P3S">
         <annotation>
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-            <rdf:Description rdf:about="#MAM00800x">
+            <rdf:Description rdf:about="#M_MAM00800x">
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                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM163185"/>
@@ -20219,10 +20218,10 @@
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-      <species metaid="MAM00801x" sboTerm="SBO:0000247" id="MAM00801x" name="3-hydroxy-THA-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C45H66N7O18P3S">
+      <species metaid="M_MAM00801x" sboTerm="SBO:0000247" id="M_MAM00801x" name="3-hydroxy-THA-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C45H66N7O18P3S">
         <annotation>
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-            <rdf:Description rdf:about="#MAM00801x">
+            <rdf:Description rdf:about="#M_MAM00801x">
               <bqbiol:is>
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@@ -20236,10 +20235,10 @@
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-      <species metaid="MAM00802c" sboTerm="SBO:0000247" id="MAM00802c" name="3-hydroxytricosanoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C44H76N7O18P3S">
+      <species metaid="M_MAM00802c" sboTerm="SBO:0000247" id="M_MAM00802c" name="3-hydroxytricosanoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C44H76N7O18P3S">
         <annotation>
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-            <rdf:Description rdf:about="#MAM00802c">
+            <rdf:Description rdf:about="#M_MAM00802c">
               <bqbiol:is>
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                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M00802"/>
@@ -20249,10 +20248,10 @@
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-      <species metaid="MAM00803c" sboTerm="SBO:0000247" id="MAM00803c" name="3-hydroxytridecanoyl-[ACP]" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H45N2O9PRS">
+      <species metaid="M_MAM00803c" sboTerm="SBO:0000247" id="M_MAM00803c" name="3-hydroxytridecanoyl-[ACP]" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H45N2O9PRS">
         <annotation>
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-            <rdf:Description rdf:about="#MAM00803c">
+            <rdf:Description rdf:about="#M_MAM00803c">
               <bqbiol:is>
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                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M00803"/>
@@ -20262,10 +20261,10 @@
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-      <species metaid="MAM00804m" sboTerm="SBO:0000247" id="MAM00804m" name="3-hydroxytridecanoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C34H56N7O18P3S">
+      <species metaid="M_MAM00804m" sboTerm="SBO:0000247" id="M_MAM00804m" name="3-hydroxytridecanoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C34H56N7O18P3S">
         <annotation>
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-            <rdf:Description rdf:about="#MAM00804m">
+            <rdf:Description rdf:about="#M_MAM00804m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M00804"/>
@@ -20275,10 +20274,10 @@
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       </species>
-      <species metaid="MAM00805c" sboTerm="SBO:0000247" id="MAM00805c" name="3-hydroxyundecanoyl-[ACP]" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C22H41N2O9PRS">
+      <species metaid="M_MAM00805c" sboTerm="SBO:0000247" id="M_MAM00805c" name="3-hydroxyundecanoyl-[ACP]" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C22H41N2O9PRS">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00805c">
+            <rdf:Description rdf:about="#M_MAM00805c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M00805"/>
@@ -20288,10 +20287,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00806m" sboTerm="SBO:0000247" id="MAM00806m" name="3-hydroxyundecanoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C32H52N7O18P3S">
+      <species metaid="M_MAM00806m" sboTerm="SBO:0000247" id="M_MAM00806m" name="3-hydroxyundecanoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C32H52N7O18P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00806m">
+            <rdf:Description rdf:about="#M_MAM00806m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M00806"/>
@@ -20301,10 +20300,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM00807c" sboTerm="SBO:0000247" id="MAM00807c" name="3-iodo-L-tyrosine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H10INO3">
+      <species metaid="M_MAM00807c" sboTerm="SBO:0000247" id="M_MAM00807c" name="3-iodo-L-tyrosine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H10INO3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00807c">
+            <rdf:Description rdf:about="#M_MAM00807c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/3ityr__L"/>
@@ -20320,10 +20319,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00808c" sboTerm="SBO:0000247" id="MAM00808c" name="3-isoLM1" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C56H96N3O31R">
+      <species metaid="M_MAM00808c" sboTerm="SBO:0000247" id="M_MAM00808c" name="3-isoLM1" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C56H96N3O31R">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00808c">
+            <rdf:Description rdf:about="#M_MAM00808c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/G00047"/>
@@ -20335,10 +20334,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00809c" sboTerm="SBO:0000247" id="MAM00809c" name="3-keto-4-methylzymosterol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C28H44O">
+      <species metaid="M_MAM00809c" sboTerm="SBO:0000247" id="M_MAM00809c" name="3-keto-4-methylzymosterol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C28H44O">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00809c">
+            <rdf:Description rdf:about="#M_MAM00809c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/4mzym_int2"/>
@@ -20356,10 +20355,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00810e" sboTerm="SBO:0000247" id="MAM00810e" name="3-keto-beta-D-galactose" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H10O6">
+      <species metaid="M_MAM00810e" sboTerm="SBO:0000247" id="M_MAM00810e" name="3-keto-beta-D-galactose" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H10O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00810e">
+            <rdf:Description rdf:about="#M_MAM00810e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:27453"/>
@@ -20373,10 +20372,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00811c" sboTerm="SBO:0000247" id="MAM00811c" name="3-keto-eicosa-8,11,14,17-all-cis-tetraenoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H60N7O18P3S">
+      <species metaid="M_MAM00811c" sboTerm="SBO:0000247" id="M_MAM00811c" name="3-keto-eicosa-8,11,14,17-all-cis-tetraenoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H60N7O18P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00811c">
+            <rdf:Description rdf:about="#M_MAM00811c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM164249"/>
@@ -20387,10 +20386,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00812e" sboTerm="SBO:0000247" id="MAM00812e" name="3-ketolactose" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C12H20O11">
+      <species metaid="M_MAM00812e" sboTerm="SBO:0000247" id="M_MAM00812e" name="3-ketolactose" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C12H20O11">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00812e">
+            <rdf:Description rdf:about="#M_MAM00812e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C05403"/>
@@ -20402,13 +20401,13 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00813x" sboTerm="SBO:0000247" id="MAM00813x" name="3-ketopristanoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C40H66N7O18P3S">
+      <species metaid="M_MAM00813x" sboTerm="SBO:0000247" id="M_MAM00813x" name="3-ketopristanoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C40H66N7O18P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00813x">
+            <rdf:Description rdf:about="#M_MAM00813x">
               <bqbiol:is>
                 <rdf:Bag>
-                  <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:28542"/>
+                  <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:57291"/>
                   <rdf:li rdf:resource="https://identifiers.org/hmdb/HMDB02057"/>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C07297"/>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM4346"/>
@@ -20420,10 +20419,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00814x" sboTerm="SBO:0000247" id="MAM00814x" name="3-keto-THA-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C45H64N7O18P3S">
+      <species metaid="M_MAM00814x" sboTerm="SBO:0000247" id="M_MAM00814x" name="3-keto-THA-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C45H64N7O18P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00814x">
+            <rdf:Description rdf:about="#M_MAM00814x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/LMFA07050068"/>
@@ -20435,10 +20434,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00815c" sboTerm="SBO:0000247" id="MAM00815c" name="3-mercaptolactate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C3H5O3S">
+      <species metaid="M_MAM00815c" sboTerm="SBO:0000247" id="M_MAM00815c" name="3-mercaptolactate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C3H5O3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00815c">
+            <rdf:Description rdf:about="#M_MAM00815c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/mercplac"/>
@@ -20454,10 +20453,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00816c" sboTerm="SBO:0000247" id="MAM00816c" name="3-mercaptolactate-cysteine-disulfide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H10O5S2N">
+      <species metaid="M_MAM00816c" sboTerm="SBO:0000247" id="M_MAM00816c" name="3-mercaptolactate-cysteine-disulfide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H10O5S2N">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00816c">
+            <rdf:Description rdf:about="#M_MAM00816c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/mercplaccys"/>
@@ -20471,10 +20470,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00816e" sboTerm="SBO:0000247" id="MAM00816e" name="3-mercaptolactate-cysteine-disulfide" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H10O5S2N">
+      <species metaid="M_MAM00816e" sboTerm="SBO:0000247" id="M_MAM00816e" name="3-mercaptolactate-cysteine-disulfide" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H10O5S2N">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00816e">
+            <rdf:Description rdf:about="#M_MAM00816e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/mercplaccys"/>
@@ -20488,10 +20487,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00817m" sboTerm="SBO:0000247" id="MAM00817m" name="3-methoxy-4-hydroxy-5-all-trans-decaprenylbenzoate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C58H87O4">
+      <species metaid="M_MAM00817m" sboTerm="SBO:0000247" id="M_MAM00817m" name="3-methoxy-4-hydroxy-5-all-trans-decaprenylbenzoate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C58H87O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00817m">
+            <rdf:Description rdf:about="#M_MAM00817m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/3dpdhb_me"/>
@@ -20504,10 +20503,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00818c" sboTerm="SBO:0000247" id="MAM00818c" name="3-methoxy-4-hydroxyphenylacetaldehyde" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H10O3">
+      <species metaid="M_MAM00818c" sboTerm="SBO:0000247" id="M_MAM00818c" name="3-methoxy-4-hydroxyphenylacetaldehyde" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H10O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00818c">
+            <rdf:Description rdf:about="#M_MAM00818c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/3mox4hpac"/>
@@ -20523,10 +20522,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00820c" sboTerm="SBO:0000247" id="MAM00820c" name="3-methoxy-4-hydroxyphenylglycolaldehyde" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H10O4">
+      <species metaid="M_MAM00820c" sboTerm="SBO:0000247" id="M_MAM00820c" name="3-methoxy-4-hydroxyphenylglycolaldehyde" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H10O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00820c">
+            <rdf:Description rdf:about="#M_MAM00820c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/3m4hpga"/>
@@ -20542,10 +20541,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00821c" sboTerm="SBO:0000247" id="MAM00821c" name="3-methoxytyramine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C9H14NO2">
+      <species metaid="M_MAM00821c" sboTerm="SBO:0000247" id="M_MAM00821c" name="3-methoxytyramine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C9H14NO2">
         <annotation>
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-            <rdf:Description rdf:about="#MAM00821c">
+            <rdf:Description rdf:about="#M_MAM00821c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/3moxtyr"/>
@@ -20561,10 +20560,10 @@
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-      <species metaid="MAM00824c" sboTerm="SBO:0000247" id="MAM00824c" name="3-methyl-2-oxobutyrate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C5H7O3">
+      <species metaid="M_MAM00824c" sboTerm="SBO:0000247" id="M_MAM00824c" name="3-methyl-2-oxobutyrate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C5H7O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00824c">
+            <rdf:Description rdf:about="#M_MAM00824c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/3mob"/>
@@ -20580,10 +20579,10 @@
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-      <species metaid="MAM00824m" sboTerm="SBO:0000247" id="MAM00824m" name="3-methyl-2-oxobutyrate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C5H7O3">
+      <species metaid="M_MAM00824m" sboTerm="SBO:0000247" id="M_MAM00824m" name="3-methyl-2-oxobutyrate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C5H7O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00824m">
+            <rdf:Description rdf:about="#M_MAM00824m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/3mob"/>
@@ -20599,10 +20598,10 @@
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-      <species metaid="MAM00825m" sboTerm="SBO:0000247" id="MAM00825m" name="3-methylcrotonoylglycine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C7H10NO3">
+      <species metaid="M_MAM00825m" sboTerm="SBO:0000247" id="M_MAM00825m" name="3-methylcrotonoylglycine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C7H10NO3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00825m">
+            <rdf:Description rdf:about="#M_MAM00825m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM166207"/>
@@ -20614,10 +20613,10 @@
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-      <species metaid="MAM00826m" sboTerm="SBO:0000247" id="MAM00826m" name="3-methylcrotonyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C26H38N7O17P3S">
+      <species metaid="M_MAM00826m" sboTerm="SBO:0000247" id="M_MAM00826m" name="3-methylcrotonyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C26H38N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00826m">
+            <rdf:Description rdf:about="#M_MAM00826m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/3mb2coa"/>
@@ -20633,10 +20632,10 @@
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-      <species metaid="MAM00827m" sboTerm="SBO:0000247" id="MAM00827m" name="3-methylglutaconyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C27H37N7O19P3S">
+      <species metaid="M_MAM00827m" sboTerm="SBO:0000247" id="M_MAM00827m" name="3-methylglutaconyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C27H37N7O19P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00827m">
+            <rdf:Description rdf:about="#M_MAM00827m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/3mgcoa"/>
@@ -20651,10 +20650,10 @@
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-      <species metaid="MAM00828c" sboTerm="SBO:0000247" id="MAM00828c" name="3-monoiodo-L-thyronine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C15H14INO4">
+      <species metaid="M_MAM00828c" sboTerm="SBO:0000247" id="M_MAM00828c" name="3-monoiodo-L-thyronine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C15H14INO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00828c">
+            <rdf:Description rdf:about="#M_MAM00828c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM169240"/>
@@ -20666,10 +20665,10 @@
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-      <species metaid="MAM00828r" sboTerm="SBO:0000247" id="MAM00828r" name="3-monoiodo-L-thyronine" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C15H14INO4">
+      <species metaid="M_MAM00828r" sboTerm="SBO:0000247" id="M_MAM00828r" name="3-monoiodo-L-thyronine" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C15H14INO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00828r">
+            <rdf:Description rdf:about="#M_MAM00828r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM169240"/>
@@ -20681,10 +20680,10 @@
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         </annotation>
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-      <species metaid="MAM00829c" sboTerm="SBO:0000247" id="MAM00829c" name="3-monoiodo-L-thyronine-4-O-sulfate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C15H13INO7S">
+      <species metaid="M_MAM00829c" sboTerm="SBO:0000247" id="M_MAM00829c" name="3-monoiodo-L-thyronine-4-O-sulfate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C15H13INO7S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00829c">
+            <rdf:Description rdf:about="#M_MAM00829c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM150752"/>
@@ -20695,10 +20694,10 @@
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       </species>
-      <species metaid="MAM00830c" sboTerm="SBO:0000247" id="MAM00830c" name="3-O-methyldopa" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H13NO4">
+      <species metaid="M_MAM00830c" sboTerm="SBO:0000247" id="M_MAM00830c" name="3-O-methyldopa" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H13NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00830c">
+            <rdf:Description rdf:about="#M_MAM00830c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/hmdb/HMDB01434"/>
@@ -20712,10 +20711,10 @@
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         </annotation>
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-      <species metaid="MAM00831m" sboTerm="SBO:0000247" id="MAM00831m" name="3-oxo-(2S)-methylisocapryloyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C30H46N7O18P3S">
+      <species metaid="M_MAM00831m" sboTerm="SBO:0000247" id="M_MAM00831m" name="3-oxo-(2S)-methylisocapryloyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C30H46N7O18P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00831m">
+            <rdf:Description rdf:about="#M_MAM00831m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM150995"/>
@@ -20726,10 +20725,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM00832x" sboTerm="SBO:0000247" id="MAM00832x" name="3-oxo-(2S,6R,10R)-trimethyl-hendecanoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C35H56N7O18P3S">
+      <species metaid="M_MAM00832x" sboTerm="SBO:0000247" id="M_MAM00832x" name="3-oxo-(2S,6R,10R)-trimethyl-hendecanoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C35H56N7O18P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00832x">
+            <rdf:Description rdf:about="#M_MAM00832x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/CE5942"/>
@@ -20739,10 +20738,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM00833x" sboTerm="SBO:0000247" id="MAM00833x" name="3-oxo-(4R,8R,12R)-trimethyl-tridecanoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C37H60N7O18P3S">
+      <species metaid="M_MAM00833x" sboTerm="SBO:0000247" id="M_MAM00833x" name="3-oxo-(4R,8R,12R)-trimethyl-tridecanoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C37H60N7O18P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00833x">
+            <rdf:Description rdf:about="#M_MAM00833x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/CE5939"/>
@@ -20752,10 +20751,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM00834m" sboTerm="SBO:0000247" id="MAM00834m" name="3-oxo-(6Z,9Z,12Z)-octadecatrienoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C39H58N7O18P3S">
+      <species metaid="M_MAM00834m" sboTerm="SBO:0000247" id="M_MAM00834m" name="3-oxo-(6Z,9Z,12Z)-octadecatrienoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C39H58N7O18P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00834m">
+            <rdf:Description rdf:about="#M_MAM00834m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/CE2439"/>
@@ -20765,10 +20764,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM00834x" sboTerm="SBO:0000247" id="MAM00834x" name="3-oxo-(6Z,9Z,12Z)-octadecatrienoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C39H58N7O18P3S">
+      <species metaid="M_MAM00834x" sboTerm="SBO:0000247" id="M_MAM00834x" name="3-oxo-(6Z,9Z,12Z)-octadecatrienoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C39H58N7O18P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00834x">
+            <rdf:Description rdf:about="#M_MAM00834x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/CE2439"/>
@@ -20778,10 +20777,10 @@
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         </annotation>
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-      <species metaid="MAM00835c" sboTerm="SBO:0000247" id="MAM00835c" name="3-oxo-10(R)-hydroxy-octadeca-(6E,8E,12Z)-trienoate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H27O4">
+      <species metaid="M_MAM00835c" sboTerm="SBO:0000247" id="M_MAM00835c" name="3-oxo-10(R)-hydroxy-octadeca-(6E,8E,12Z)-trienoate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H27O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00835c">
+            <rdf:Description rdf:about="#M_MAM00835c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM163671"/>
@@ -20792,10 +20791,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM00835m" sboTerm="SBO:0000247" id="MAM00835m" name="3-oxo-10(R)-hydroxy-octadeca-(6E,8E,12Z)-trienoate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H27O4">
+      <species metaid="M_MAM00835m" sboTerm="SBO:0000247" id="M_MAM00835m" name="3-oxo-10(R)-hydroxy-octadeca-(6E,8E,12Z)-trienoate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H27O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00835m">
+            <rdf:Description rdf:about="#M_MAM00835m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM163671"/>
@@ -20806,10 +20805,10 @@
           </rdf:RDF>
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+      <species metaid="M_MAM00835x" sboTerm="SBO:0000247" id="M_MAM00835x" name="3-oxo-10(R)-hydroxy-octadeca-(6E,8E,12Z)-trienoate" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H27O4">
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@@ -20820,10 +20819,10 @@
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+      <species metaid="M_MAM00836m" sboTerm="SBO:0000247" id="M_MAM00836m" name="3-oxo-10(R)-hydroxy-octadeca-(6E,8E,12Z)-trienoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C39H58N7O19P3S">
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@@ -20834,10 +20833,10 @@
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+      <species metaid="M_MAM00836x" sboTerm="SBO:0000247" id="M_MAM00836x" name="3-oxo-10(R)-hydroxy-octadeca-(6E,8E,12Z)-trienoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C39H58N7O19P3S">
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@@ -20848,10 +20847,10 @@
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+      <species metaid="M_MAM00837c" sboTerm="SBO:0000247" id="M_MAM00837c" name="3-oxo-10(S)-hydroxy-octadeca-(6E,8E,12Z)-trienoate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H27O4">
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+            <rdf:Description rdf:about="#M_MAM00837c">
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@@ -20862,10 +20861,10 @@
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+      <species metaid="M_MAM00837m" sboTerm="SBO:0000247" id="M_MAM00837m" name="3-oxo-10(S)-hydroxy-octadeca-(6E,8E,12Z)-trienoate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H27O4">
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@@ -20876,10 +20875,10 @@
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+      <species metaid="M_MAM00837x" sboTerm="SBO:0000247" id="M_MAM00837x" name="3-oxo-10(S)-hydroxy-octadeca-(6E,8E,12Z)-trienoate" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H27O4">
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@@ -20890,10 +20889,10 @@
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+      <species metaid="M_MAM00838m" sboTerm="SBO:0000247" id="M_MAM00838m" name="3-oxo-10(S)-hydroxy-octadeca-(6E,8E,12Z)-trienoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C39H58N7O19P3S">
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@@ -20904,10 +20903,10 @@
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+      <species metaid="M_MAM00838x" sboTerm="SBO:0000247" id="M_MAM00838x" name="3-oxo-10(S)-hydroxy-octadeca-(6E,8E,12Z)-trienoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C39H58N7O19P3S">
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@@ -20918,10 +20917,10 @@
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+      <species metaid="M_MAM00839c" sboTerm="SBO:0000247" id="M_MAM00839c" name="3-oxo-11cis-docosenoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C43H70N7O18P3S">
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+            <rdf:Description rdf:about="#M_MAM00839c">
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@@ -20931,10 +20930,10 @@
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+      <species metaid="M_MAM00840c" sboTerm="SBO:0000247" id="M_MAM00840c" name="3-oxo-11-cis-eicosenoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H66N7O18P3S">
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+            <rdf:Description rdf:about="#M_MAM00840c">
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@@ -20945,10 +20944,10 @@
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+      <species metaid="M_MAM00840m" sboTerm="SBO:0000247" id="M_MAM00840m" name="3-oxo-11-cis-eicosenoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H66N7O18P3S">
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@@ -20959,10 +20958,10 @@
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+      <species metaid="M_MAM00840x" sboTerm="SBO:0000247" id="M_MAM00840x" name="3-oxo-11-cis-eicosenoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H66N7O18P3S">
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@@ -20973,10 +20972,10 @@
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+      <species metaid="M_MAM00841m" sboTerm="SBO:0000247" id="M_MAM00841m" name="3-oxo-11-cis-octadecenoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C39H62N7O18P3S">
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@@ -20987,10 +20986,10 @@
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+      <species metaid="M_MAM00841x" sboTerm="SBO:0000247" id="M_MAM00841x" name="3-oxo-11-cis-octadecenoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C39H62N7O18P3S">
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@@ -21001,10 +21000,10 @@
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+      <species metaid="M_MAM00842c" sboTerm="SBO:0000247" id="M_MAM00842c" name="3-oxo-13cis-docosenoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C43H70N7O18P3S">
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@@ -21015,10 +21014,10 @@
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+      <species metaid="M_MAM00842m" sboTerm="SBO:0000247" id="M_MAM00842m" name="3-oxo-13cis-docosenoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C43H70N7O18P3S">
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@@ -21029,10 +21028,10 @@
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+      <species metaid="M_MAM00842x" sboTerm="SBO:0000247" id="M_MAM00842x" name="3-oxo-13cis-docosenoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C43H70N7O18P3S">
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+            <rdf:Description rdf:about="#M_MAM00842x">
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@@ -21043,10 +21042,10 @@
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+      <species metaid="M_MAM00843c" sboTerm="SBO:0000247" id="M_MAM00843c" name="3-oxo-13-cis-eicosenoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H66N7O18P3S">
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+            <rdf:Description rdf:about="#M_MAM00843c">
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@@ -21056,10 +21055,10 @@
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+      <species metaid="M_MAM00843m" sboTerm="SBO:0000247" id="M_MAM00843m" name="3-oxo-13-cis-eicosenoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H66N7O18P3S">
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+            <rdf:Description rdf:about="#M_MAM00843m">
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@@ -21069,10 +21068,10 @@
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+      <species metaid="M_MAM00843x" sboTerm="SBO:0000247" id="M_MAM00843x" name="3-oxo-13-cis-eicosenoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H66N7O18P3S">
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+            <rdf:Description rdf:about="#M_MAM00843x">
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@@ -21082,10 +21081,10 @@
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-      <species metaid="MAM00844m" sboTerm="SBO:0000247" id="MAM00844m" name="3-oxo-4(R),8-dimethyl-nonanoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C32H50N7O18P3S">
+      <species metaid="M_MAM00844m" sboTerm="SBO:0000247" id="M_MAM00844m" name="3-oxo-4(R),8-dimethyl-nonanoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C32H50N7O18P3S">
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-            <rdf:Description rdf:about="#MAM00844m">
+            <rdf:Description rdf:about="#M_MAM00844m">
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@@ -21096,10 +21095,10 @@
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+      <species metaid="M_MAM00845m" sboTerm="SBO:0000247" id="M_MAM00845m" name="3-oxo-4-methyl-pentanoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C27H40N7O18P3S">
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-            <rdf:Description rdf:about="#MAM00845m">
+            <rdf:Description rdf:about="#M_MAM00845m">
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@@ -21110,10 +21109,10 @@
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-      <species metaid="MAM00846m" sboTerm="SBO:0000247" id="MAM00846m" name="3-oxo-5(S),12(R)-dihydroxy-eicosa-8-trans-6,14-cis-trienoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H62N7O20P3S">
+      <species metaid="M_MAM00846m" sboTerm="SBO:0000247" id="M_MAM00846m" name="3-oxo-5(S),12(R)-dihydroxy-eicosa-8-trans-6,14-cis-trienoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H62N7O20P3S">
         <annotation>
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+            <rdf:Description rdf:about="#M_MAM00846m">
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@@ -21124,10 +21123,10 @@
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+      <species metaid="M_MAM00846x" sboTerm="SBO:0000247" id="M_MAM00846x" name="3-oxo-5(S),12(R)-dihydroxy-eicosa-8-trans-6,14-cis-trienoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H62N7O20P3S">
         <annotation>
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+            <rdf:Description rdf:about="#M_MAM00846x">
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                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM91381"/>
@@ -21138,10 +21137,10 @@
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+      <species metaid="M_MAM00847m" sboTerm="SBO:0000247" id="M_MAM00847m" name="3-oxo-6(R)-hydroxy-tetradec-8-cis-enoate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C14H23O4">
         <annotation>
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+            <rdf:Description rdf:about="#M_MAM00847m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM91381"/>
@@ -21152,10 +21151,10 @@
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-      <species metaid="MAM00848m" sboTerm="SBO:0000247" id="MAM00848m" name="3-oxo-6(S)-hydroxy-tetradec-(8Z)-enoate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C14H23O4">
+      <species metaid="M_MAM00848m" sboTerm="SBO:0000247" id="M_MAM00848m" name="3-oxo-6(S)-hydroxy-tetradec-(8Z)-enoate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C14H23O4">
         <annotation>
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-            <rdf:Description rdf:about="#MAM00848m">
+            <rdf:Description rdf:about="#M_MAM00848m">
               <bqbiol:is>
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                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM91381"/>
@@ -21166,10 +21165,10 @@
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-      <species metaid="MAM00849m" sboTerm="SBO:0000247" id="MAM00849m" name="3-oxo-7-hexadecenoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C37H58N7O18P3S">
+      <species metaid="M_MAM00849m" sboTerm="SBO:0000247" id="M_MAM00849m" name="3-oxo-7-hexadecenoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C37H58N7O18P3S">
         <annotation>
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-            <rdf:Description rdf:about="#MAM00849m">
+            <rdf:Description rdf:about="#M_MAM00849m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M00849"/>
@@ -21179,10 +21178,10 @@
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-      <species metaid="MAM00849x" sboTerm="SBO:0000247" id="MAM00849x" name="3-oxo-7-hexadecenoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C37H58N7O18P3S">
+      <species metaid="M_MAM00849x" sboTerm="SBO:0000247" id="M_MAM00849x" name="3-oxo-7-hexadecenoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C37H58N7O18P3S">
         <annotation>
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-            <rdf:Description rdf:about="#MAM00849x">
+            <rdf:Description rdf:about="#M_MAM00849x">
               <bqbiol:is>
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                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M00849"/>
@@ -21192,10 +21191,10 @@
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-      <species metaid="MAM00850m" sboTerm="SBO:0000247" id="MAM00850m" name="3-oxo-8(R)-hydroxy-hexadeca-(6E,10Z)-dienoate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C16H25O4">
+      <species metaid="M_MAM00850m" sboTerm="SBO:0000247" id="M_MAM00850m" name="3-oxo-8(R)-hydroxy-hexadeca-(6E,10Z)-dienoate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C16H25O4">
         <annotation>
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-            <rdf:Description rdf:about="#MAM00850m">
+            <rdf:Description rdf:about="#M_MAM00850m">
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                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM91381"/>
@@ -21206,10 +21205,10 @@
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+      <species metaid="M_MAM00851m" sboTerm="SBO:0000247" id="M_MAM00851m" name="3-oxo-8(S)-hydroxy-hexadeca-(6E,10Z)-dienoate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C16H25O4">
         <annotation>
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-            <rdf:Description rdf:about="#MAM00851m">
+            <rdf:Description rdf:about="#M_MAM00851m">
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                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM91381"/>
@@ -21220,10 +21219,10 @@
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-      <species metaid="MAM00852c" sboTerm="SBO:0000247" id="MAM00852c" name="3-oxo-9-cis-eicosenoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H66N7O18P3S">
+      <species metaid="M_MAM00852c" sboTerm="SBO:0000247" id="M_MAM00852c" name="3-oxo-9-cis-eicosenoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H66N7O18P3S">
         <annotation>
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-            <rdf:Description rdf:about="#MAM00852c">
+            <rdf:Description rdf:about="#M_MAM00852c">
               <bqbiol:is>
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                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M00852"/>
@@ -21233,10 +21232,10 @@
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-      <species metaid="MAM00853x" sboTerm="SBO:0000247" id="MAM00853x" name="3-oxo-all-cis-6,9,12,15,18-tetracosapentaenoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C45H66N7O18P3S">
+      <species metaid="M_MAM00853x" sboTerm="SBO:0000247" id="M_MAM00853x" name="3-oxo-all-cis-6,9,12,15,18-tetracosapentaenoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C45H66N7O18P3S">
         <annotation>
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-            <rdf:Description rdf:about="#MAM00853x">
+            <rdf:Description rdf:about="#M_MAM00853x">
               <bqbiol:is>
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                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM164259"/>
@@ -21247,10 +21246,10 @@
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@@ -21261,10 +21260,10 @@
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+      <species metaid="M_MAM00854x" sboTerm="SBO:0000247" id="M_MAM00854x" name="3-oxo-cis,cis-5,8-tetradecadienoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C35H52N7O18P3S">
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@@ -21275,10 +21274,10 @@
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+      <species metaid="M_MAM00855m" sboTerm="SBO:0000247" id="M_MAM00855m" name="3-oxo-cis,cis-7,10-hexadecadienoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C37H56N7O18P3S">
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@@ -21289,10 +21288,10 @@
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+      <species metaid="M_MAM00855x" sboTerm="SBO:0000247" id="M_MAM00855x" name="3-oxo-cis,cis-7,10-hexadecadienoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C37H56N7O18P3S">
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@@ -21303,10 +21302,10 @@
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+      <species metaid="M_MAM00856c" sboTerm="SBO:0000247" id="M_MAM00856c" name="3-oxo-cis-15-tetracosaenoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C45H74N7O18P3S">
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+            <rdf:Description rdf:about="#M_MAM00856c">
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@@ -21317,10 +21316,10 @@
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+      <species metaid="M_MAM00856x" sboTerm="SBO:0000247" id="M_MAM00856x" name="3-oxo-cis-15-tetracosaenoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C45H74N7O18P3S">
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+            <rdf:Description rdf:about="#M_MAM00856x">
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@@ -21331,10 +21330,10 @@
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+      <species metaid="M_MAM00857c" sboTerm="SBO:0000247" id="M_MAM00857c" name="3-oxodecanoyl-[ACP]" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C21H37N2O9PRS">
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+            <rdf:Description rdf:about="#M_MAM00857c">
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@@ -21346,10 +21345,10 @@
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+      <species metaid="M_MAM00858m" sboTerm="SBO:0000247" id="M_MAM00858m" name="3-oxodecanoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C31H48N7O18P3S">
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+            <rdf:Description rdf:about="#M_MAM00858m">
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@@ -21364,10 +21363,10 @@
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+      <species metaid="M_MAM00858x" sboTerm="SBO:0000247" id="M_MAM00858x" name="3-oxodecanoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C31H48N7O18P3S">
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+            <rdf:Description rdf:about="#M_MAM00858x">
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@@ -21382,10 +21381,10 @@
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+      <species metaid="M_MAM00859c" sboTerm="SBO:0000247" id="M_MAM00859c" name="3-oxo-dihomo-gamma-linolenoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H62N7O18P3S">
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+            <rdf:Description rdf:about="#M_MAM00859c">
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@@ -21396,10 +21395,10 @@
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+      <species metaid="M_MAM00859m" sboTerm="SBO:0000247" id="M_MAM00859m" name="3-oxo-dihomo-gamma-linolenoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H62N7O18P3S">
         <annotation>
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+            <rdf:Description rdf:about="#M_MAM00859m">
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@@ -21410,10 +21409,10 @@
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+      <species metaid="M_MAM00859x" sboTerm="SBO:0000247" id="M_MAM00859x" name="3-oxo-dihomo-gamma-linolenoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H62N7O18P3S">
         <annotation>
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@@ -21424,10 +21423,10 @@
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+      <species metaid="M_MAM00860c" sboTerm="SBO:0000247" id="M_MAM00860c" name="3-oxodocasa-cis,cis-13,16-dienoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C43H68N7O18P3S">
         <annotation>
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+            <rdf:Description rdf:about="#M_MAM00860c">
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@@ -21437,10 +21436,10 @@
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+      <species metaid="M_MAM00861c" sboTerm="SBO:0000247" id="M_MAM00861c" name="3-oxo-docosa-10,13,16,19-all-cis-tetraenoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C43H64N7O18P3S">
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@@ -21451,10 +21450,10 @@
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+      <species metaid="M_MAM00862c" sboTerm="SBO:0000247" id="M_MAM00862c" name="3-oxo-docosa-13,16,19-all-cis-trienoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C43H66N7O18P3S">
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+            <rdf:Description rdf:about="#M_MAM00862c">
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@@ -21465,10 +21464,10 @@
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+      <species metaid="M_MAM00863c" sboTerm="SBO:0000247" id="M_MAM00863c" name="3-oxo-docosa-7,10,13,16,19-all-cis-pentaenoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C43H62N7O18P3S">
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+            <rdf:Description rdf:about="#M_MAM00863c">
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@@ -21479,10 +21478,10 @@
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@@ -21493,10 +21492,10 @@
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+      <species metaid="M_MAM00865c" sboTerm="SBO:0000247" id="M_MAM00865c" name="3-oxo-docosa-cis,cis,cis-10,13,16-trienoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C43H66N7O18P3S">
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@@ -21507,10 +21506,10 @@
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+      <species metaid="M_MAM00866c" sboTerm="SBO:0000247" id="M_MAM00866c" name="3-oxodocosanoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C43H72N7O18P3S">
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+            <rdf:Description rdf:about="#M_MAM00866c">
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@@ -21522,10 +21521,10 @@
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+      <species metaid="M_MAM00866m" sboTerm="SBO:0000247" id="M_MAM00866m" name="3-oxodocosanoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C43H72N7O18P3S">
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+            <rdf:Description rdf:about="#M_MAM00866m">
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@@ -21537,10 +21536,10 @@
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+      <species metaid="M_MAM00866x" sboTerm="SBO:0000247" id="M_MAM00866x" name="3-oxodocosanoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C43H72N7O18P3S">
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+            <rdf:Description rdf:about="#M_MAM00866x">
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@@ -21552,10 +21551,10 @@
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+      <species metaid="M_MAM00867c" sboTerm="SBO:0000247" id="M_MAM00867c" name="3-oxododecanoyl-[ACP]" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C23H41N2O9PRS">
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+            <rdf:Description rdf:about="#M_MAM00867c">
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@@ -21567,10 +21566,10 @@
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+      <species metaid="M_MAM00868m" sboTerm="SBO:0000247" id="M_MAM00868m" name="3-oxododecanoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C33H52N7O18P3S">
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+            <rdf:Description rdf:about="#M_MAM00868m">
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@@ -21586,10 +21585,10 @@
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+      <species metaid="M_MAM00868x" sboTerm="SBO:0000247" id="M_MAM00868x" name="3-oxododecanoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C33H52N7O18P3S">
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+            <rdf:Description rdf:about="#M_MAM00868x">
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@@ -21605,10 +21604,10 @@
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+      <species metaid="M_MAM00869c" sboTerm="SBO:0000247" id="M_MAM00869c" name="3-oxoeicosa-cis,cis,cis-11,14,17-trienoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H62N7O18P3S">
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+            <rdf:Description rdf:about="#M_MAM00869c">
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@@ -21618,10 +21617,10 @@
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+      <species metaid="M_MAM00870c" sboTerm="SBO:0000247" id="M_MAM00870c" name="3-oxoeicosa-cis,cis-11,14-dienoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H64N7O18P3S">
         <annotation>
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+            <rdf:Description rdf:about="#M_MAM00870c">
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@@ -21632,10 +21631,10 @@
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+      <species metaid="M_MAM00871c" sboTerm="SBO:0000247" id="M_MAM00871c" name="3-oxo-eicosadienoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H64N7O18P3S">
         <annotation>
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-            <rdf:Description rdf:about="#MAM00871c">
+            <rdf:Description rdf:about="#M_MAM00871c">
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                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M00871"/>
@@ -21645,10 +21644,10 @@
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+      <species metaid="M_MAM00872c" sboTerm="SBO:0000247" id="M_MAM00872c" name="3-oxoeicosanoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H68N7O18P3S">
         <annotation>
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+            <rdf:Description rdf:about="#M_MAM00872c">
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@@ -21660,10 +21659,10 @@
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+      <species metaid="M_MAM00872m" sboTerm="SBO:0000247" id="M_MAM00872m" name="3-oxoeicosanoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H68N7O18P3S">
         <annotation>
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+            <rdf:Description rdf:about="#M_MAM00872m">
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@@ -21675,10 +21674,10 @@
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+      <species metaid="M_MAM00872x" sboTerm="SBO:0000247" id="M_MAM00872x" name="3-oxoeicosanoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H68N7O18P3S">
         <annotation>
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+            <rdf:Description rdf:about="#M_MAM00872x">
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@@ -21690,10 +21689,10 @@
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+      <species metaid="M_MAM00873c" sboTerm="SBO:0000247" id="M_MAM00873c" name="3-oxoheneicosanoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C42H70N7O18P3S">
         <annotation>
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+            <rdf:Description rdf:about="#M_MAM00873c">
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@@ -21703,10 +21702,10 @@
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+      <species metaid="M_MAM00873m" sboTerm="SBO:0000247" id="M_MAM00873m" name="3-oxoheneicosanoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C42H70N7O18P3S">
         <annotation>
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@@ -21716,10 +21715,10 @@
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+      <species metaid="M_MAM00874c" sboTerm="SBO:0000247" id="M_MAM00874c" name="3-oxoheptadecanoyl-[ACP]" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C28H51N2O9PRS">
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+            <rdf:Description rdf:about="#M_MAM00874c">
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@@ -21729,10 +21728,10 @@
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+      <species metaid="M_MAM00875m" sboTerm="SBO:0000247" id="M_MAM00875m" name="3-oxoheptadecanoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C38H62N7O18P3S">
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+            <rdf:Description rdf:about="#M_MAM00875m">
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@@ -21742,10 +21741,10 @@
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+      <species metaid="M_MAM00876c" sboTerm="SBO:0000247" id="M_MAM00876c" name="3-oxoheptanoyl-[ACP]" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H31N2O9PRS">
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-            <rdf:Description rdf:about="#MAM00876c">
+            <rdf:Description rdf:about="#M_MAM00876c">
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@@ -21755,10 +21754,10 @@
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+      <species metaid="M_MAM00877m" sboTerm="SBO:0000247" id="M_MAM00877m" name="3-oxoheptanoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C28H42N7O18P3S">
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+            <rdf:Description rdf:about="#M_MAM00877m">
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@@ -21769,10 +21768,10 @@
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+      <species metaid="M_MAM00878c" sboTerm="SBO:0000247" id="M_MAM00878c" name="3-oxohexacosanoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C47H80N7O18P3S">
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-            <rdf:Description rdf:about="#MAM00878c">
+            <rdf:Description rdf:about="#M_MAM00878c">
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@@ -21784,10 +21783,10 @@
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+      <species metaid="M_MAM00878x" sboTerm="SBO:0000247" id="M_MAM00878x" name="3-oxohexacosanoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C47H80N7O18P3S">
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+            <rdf:Description rdf:about="#M_MAM00878x">
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@@ -21799,10 +21798,10 @@
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+      <species metaid="M_MAM00879c" sboTerm="SBO:0000247" id="M_MAM00879c" name="3-oxo-hexacosenoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C47H78N7O18P3S">
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+            <rdf:Description rdf:about="#M_MAM00879c">
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@@ -21812,10 +21811,10 @@
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+      <species metaid="M_MAM00879x" sboTerm="SBO:0000247" id="M_MAM00879x" name="3-oxo-hexacosenoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C47H78N7O18P3S">
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-            <rdf:Description rdf:about="#MAM00879x">
+            <rdf:Description rdf:about="#M_MAM00879x">
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@@ -21825,10 +21824,10 @@
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+      <species metaid="M_MAM00880c" sboTerm="SBO:0000247" id="M_MAM00880c" name="3-oxohexadecanoyl-[ACP]" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C27H49N2O9PRS">
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-            <rdf:Description rdf:about="#MAM00880c">
+            <rdf:Description rdf:about="#M_MAM00880c">
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@@ -21840,10 +21839,10 @@
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+      <species metaid="M_MAM00881c" sboTerm="SBO:0000247" id="M_MAM00881c" name="3-oxohexanoyl-[ACP]" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C17H29N2O9PRS">
         <annotation>
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-            <rdf:Description rdf:about="#MAM00881c">
+            <rdf:Description rdf:about="#M_MAM00881c">
               <bqbiol:is>
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                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C05746"/>
@@ -21855,10 +21854,10 @@
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+      <species metaid="M_MAM00882m" sboTerm="SBO:0000247" id="M_MAM00882m" name="3-oxohexanoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C27H40N7O18P3S">
         <annotation>
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-            <rdf:Description rdf:about="#MAM00882m">
+            <rdf:Description rdf:about="#M_MAM00882m">
               <bqbiol:is>
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@@ -21873,10 +21872,10 @@
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+      <species metaid="M_MAM00882x" sboTerm="SBO:0000247" id="M_MAM00882x" name="3-oxohexanoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C27H40N7O18P3S">
         <annotation>
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-            <rdf:Description rdf:about="#MAM00882x">
+            <rdf:Description rdf:about="#M_MAM00882x">
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@@ -21891,10 +21890,10 @@
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+      <species metaid="M_MAM00883m" sboTerm="SBO:0000247" id="M_MAM00883m" name="3-oxolaur-6-cis-enoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C33H50N7O18P3S">
         <annotation>
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-            <rdf:Description rdf:about="#MAM00883m">
+            <rdf:Description rdf:about="#M_MAM00883m">
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@@ -21905,10 +21904,10 @@
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+      <species metaid="M_MAM00883x" sboTerm="SBO:0000247" id="M_MAM00883x" name="3-oxolaur-6-cis-enoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C33H50N7O18P3S">
         <annotation>
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-            <rdf:Description rdf:about="#MAM00883x">
+            <rdf:Description rdf:about="#M_MAM00883x">
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@@ -21919,10 +21918,10 @@
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+      <species metaid="M_MAM00884m" sboTerm="SBO:0000247" id="M_MAM00884m" name="3-oxolinoleoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C39H60N7O18P3S">
         <annotation>
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-            <rdf:Description rdf:about="#MAM00884m">
+            <rdf:Description rdf:about="#M_MAM00884m">
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@@ -21933,10 +21932,10 @@
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+      <species metaid="M_MAM00884x" sboTerm="SBO:0000247" id="M_MAM00884x" name="3-oxolinoleoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C39H60N7O18P3S">
         <annotation>
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-            <rdf:Description rdf:about="#MAM00884x">
+            <rdf:Description rdf:about="#M_MAM00884x">
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@@ -21947,10 +21946,10 @@
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+      <species metaid="M_MAM00885m" sboTerm="SBO:0000247" id="M_MAM00885m" name="3-oxomyrist-5-enoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C35H54N7O18P3S">
         <annotation>
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-            <rdf:Description rdf:about="#MAM00885m">
+            <rdf:Description rdf:about="#M_MAM00885m">
               <bqbiol:is>
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                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M00885"/>
@@ -21960,10 +21959,10 @@
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+      <species metaid="M_MAM00885x" sboTerm="SBO:0000247" id="M_MAM00885x" name="3-oxomyrist-5-enoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C35H54N7O18P3S">
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@@ -21973,10 +21972,10 @@
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+      <species metaid="M_MAM00886m" sboTerm="SBO:0000247" id="M_MAM00886m" name="3-oxomyrist-7-enoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C35H54N7O18P3S">
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+            <rdf:Description rdf:about="#M_MAM00886m">
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@@ -21988,10 +21987,10 @@
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+      <species metaid="M_MAM00886x" sboTerm="SBO:0000247" id="M_MAM00886x" name="3-oxomyrist-7-enoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C35H54N7O18P3S">
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+            <rdf:Description rdf:about="#M_MAM00886x">
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@@ -22003,10 +22002,10 @@
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+      <species metaid="M_MAM00887c" sboTerm="SBO:0000247" id="M_MAM00887c" name="3-oxononadecanoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C40H66N7O18P3S">
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+            <rdf:Description rdf:about="#M_MAM00887c">
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@@ -22016,10 +22015,10 @@
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+      <species metaid="M_MAM00887m" sboTerm="SBO:0000247" id="M_MAM00887m" name="3-oxononadecanoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C40H66N7O18P3S">
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+            <rdf:Description rdf:about="#M_MAM00887m">
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@@ -22029,10 +22028,10 @@
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+      <species metaid="M_MAM00888c" sboTerm="SBO:0000247" id="M_MAM00888c" name="3-oxononanoyl-[ACP]" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H35N2O9PRS">
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+            <rdf:Description rdf:about="#M_MAM00888c">
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@@ -22042,10 +22041,10 @@
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+      <species metaid="M_MAM00889m" sboTerm="SBO:0000247" id="M_MAM00889m" name="3-oxononanoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C30H46N7O18P3S">
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@@ -22055,10 +22054,10 @@
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+      <species metaid="M_MAM00890c" sboTerm="SBO:0000247" id="M_MAM00890c" name="3-oxooctadecanoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C39H64N7O18P3S">
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+            <rdf:Description rdf:about="#M_MAM00890c">
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@@ -22074,10 +22073,10 @@
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+      <species metaid="M_MAM00890m" sboTerm="SBO:0000247" id="M_MAM00890m" name="3-oxooctadecanoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C39H64N7O18P3S">
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+            <rdf:Description rdf:about="#M_MAM00890m">
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@@ -22093,10 +22092,10 @@
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+      <species metaid="M_MAM00890x" sboTerm="SBO:0000247" id="M_MAM00890x" name="3-oxooctadecanoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C39H64N7O18P3S">
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+            <rdf:Description rdf:about="#M_MAM00890x">
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@@ -22112,10 +22111,10 @@
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+      <species metaid="M_MAM00891c" sboTerm="SBO:0000247" id="M_MAM00891c" name="3-oxooctanoyl-[ACP]" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C19H33N2O9PRS">
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-            <rdf:Description rdf:about="#MAM00891c">
+            <rdf:Description rdf:about="#M_MAM00891c">
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@@ -22127,10 +22126,10 @@
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+      <species metaid="M_MAM00892m" sboTerm="SBO:0000247" id="M_MAM00892m" name="3-oxooctanoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C29H44N7O18P3S">
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+            <rdf:Description rdf:about="#M_MAM00892m">
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@@ -22145,10 +22144,10 @@
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+      <species metaid="M_MAM00892x" sboTerm="SBO:0000247" id="M_MAM00892x" name="3-oxooctanoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C29H44N7O18P3S">
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@@ -22163,10 +22162,10 @@
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+      <species metaid="M_MAM00893m" sboTerm="SBO:0000247" id="M_MAM00893m" name="3-oxooleoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C39H62N7O18P3S">
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@@ -22177,10 +22176,10 @@
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+      <species metaid="M_MAM00893x" sboTerm="SBO:0000247" id="M_MAM00893x" name="3-oxooleoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C39H62N7O18P3S">
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@@ -22191,10 +22190,10 @@
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+      <species metaid="M_MAM00894m" sboTerm="SBO:0000247" id="M_MAM00894m" name="3-oxopalmitoleoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C37H58N7O18P3S">
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+            <rdf:Description rdf:about="#M_MAM00894m">
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@@ -22207,10 +22206,10 @@
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+      <species metaid="M_MAM00894x" sboTerm="SBO:0000247" id="M_MAM00894x" name="3-oxopalmitoleoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C37H58N7O18P3S">
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+            <rdf:Description rdf:about="#M_MAM00894x">
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@@ -22223,10 +22222,10 @@
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+      <species metaid="M_MAM00895m" sboTerm="SBO:0000247" id="M_MAM00895m" name="3-oxopalmitoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C37H60N7O18P3S">
         <annotation>
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-            <rdf:Description rdf:about="#MAM00895m">
+            <rdf:Description rdf:about="#M_MAM00895m">
               <bqbiol:is>
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                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/3ohdcoa"/>
@@ -22242,10 +22241,10 @@
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-      <species metaid="MAM00895x" sboTerm="SBO:0000247" id="MAM00895x" name="3-oxopalmitoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C37H60N7O18P3S">
+      <species metaid="M_MAM00895x" sboTerm="SBO:0000247" id="M_MAM00895x" name="3-oxopalmitoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C37H60N7O18P3S">
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-            <rdf:Description rdf:about="#MAM00895x">
+            <rdf:Description rdf:about="#M_MAM00895x">
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                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/3ohdcoa"/>
@@ -22261,10 +22260,10 @@
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-      <species metaid="MAM00896c" sboTerm="SBO:0000247" id="MAM00896c" name="3-oxopentadecanoyl-[ACP]" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C26H47N2O9PRS">
+      <species metaid="M_MAM00896c" sboTerm="SBO:0000247" id="M_MAM00896c" name="3-oxopentadecanoyl-[ACP]" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C26H47N2O9PRS">
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           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00896c">
+            <rdf:Description rdf:about="#M_MAM00896c">
               <bqbiol:is>
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                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M00896"/>
@@ -22274,10 +22273,10 @@
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-      <species metaid="MAM00897m" sboTerm="SBO:0000247" id="MAM00897m" name="3-oxopentadecanoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C36H58N7O18P3S">
+      <species metaid="M_MAM00897m" sboTerm="SBO:0000247" id="M_MAM00897m" name="3-oxopentadecanoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C36H58N7O18P3S">
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-            <rdf:Description rdf:about="#MAM00897m">
+            <rdf:Description rdf:about="#M_MAM00897m">
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                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M00897"/>
@@ -22287,10 +22286,10 @@
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+      <species metaid="M_MAM00898c" sboTerm="SBO:0000247" id="M_MAM00898c" name="3-oxopentanoyl-[ACP]" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C16H27N2O9PRS">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00898c">
+            <rdf:Description rdf:about="#M_MAM00898c">
               <bqbiol:is>
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                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M00898"/>
@@ -22300,10 +22299,10 @@
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-      <species metaid="MAM00899m" sboTerm="SBO:0000247" id="MAM00899m" name="3-oxopentanoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C26H38N7O18P3S">
+      <species metaid="M_MAM00899m" sboTerm="SBO:0000247" id="M_MAM00899m" name="3-oxopentanoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C26H38N7O18P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00899m">
+            <rdf:Description rdf:about="#M_MAM00899m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM10118"/>
@@ -22314,10 +22313,10 @@
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+      <species metaid="M_MAM00900m" sboTerm="SBO:0000247" id="M_MAM00900m" name="3-oxopropanoate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C3H3O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00900m">
+            <rdf:Description rdf:about="#M_MAM00900m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/msa"/>
@@ -22332,10 +22331,10 @@
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-      <species metaid="MAM00901c" sboTerm="SBO:0000247" id="MAM00901c" name="3-oxo-tetracosa-12,15,18,21-all-cis-tetraenoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C45H68N7O18P3S">
+      <species metaid="M_MAM00901c" sboTerm="SBO:0000247" id="M_MAM00901c" name="3-oxo-tetracosa-12,15,18,21-all-cis-tetraenoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C45H68N7O18P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00901c">
+            <rdf:Description rdf:about="#M_MAM00901c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM164265"/>
@@ -22346,10 +22345,10 @@
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-      <species metaid="MAM00902c" sboTerm="SBO:0000247" id="MAM00902c" name="3-oxo-tetracosa-9,12,15,18,21-all-cis-pentaenoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C45H66N7O18P3S">
+      <species metaid="M_MAM00902c" sboTerm="SBO:0000247" id="M_MAM00902c" name="3-oxo-tetracosa-9,12,15,18,21-all-cis-pentaenoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C45H66N7O18P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00902c">
+            <rdf:Description rdf:about="#M_MAM00902c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM164259"/>
@@ -22360,10 +22359,10 @@
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-      <species metaid="MAM00903c" sboTerm="SBO:0000247" id="MAM00903c" name="3-oxo-tetracosa-9,12,15,18-all-cis-tetraenoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C45H68N7O18P3S">
+      <species metaid="M_MAM00903c" sboTerm="SBO:0000247" id="M_MAM00903c" name="3-oxo-tetracosa-9,12,15,18-all-cis-tetraenoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C45H68N7O18P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00903c">
+            <rdf:Description rdf:about="#M_MAM00903c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM164266"/>
@@ -22374,10 +22373,10 @@
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-      <species metaid="MAM00904c" sboTerm="SBO:0000247" id="MAM00904c" name="3-oxotetracosanoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C45H76N7O18P3S">
+      <species metaid="M_MAM00904c" sboTerm="SBO:0000247" id="M_MAM00904c" name="3-oxotetracosanoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C45H76N7O18P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00904c">
+            <rdf:Description rdf:about="#M_MAM00904c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM36773"/>
@@ -22389,10 +22388,10 @@
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-      <species metaid="MAM00904x" sboTerm="SBO:0000247" id="MAM00904x" name="3-oxotetracosanoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C45H76N7O18P3S">
+      <species metaid="M_MAM00904x" sboTerm="SBO:0000247" id="M_MAM00904x" name="3-oxotetracosanoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C45H76N7O18P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00904x">
+            <rdf:Description rdf:about="#M_MAM00904x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM36773"/>
@@ -22404,10 +22403,10 @@
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-      <species metaid="MAM00905c" sboTerm="SBO:0000247" id="MAM00905c" name="3-oxotetradecanoyl-[ACP]" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C25H45N2O9PRS">
+      <species metaid="M_MAM00905c" sboTerm="SBO:0000247" id="M_MAM00905c" name="3-oxotetradecanoyl-[ACP]" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C25H45N2O9PRS">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00905c">
+            <rdf:Description rdf:about="#M_MAM00905c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C05759"/>
@@ -22419,10 +22418,10 @@
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-      <species metaid="MAM00906m" sboTerm="SBO:0000247" id="MAM00906m" name="3-oxotetradecanoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C35H56N7O18P3S">
+      <species metaid="M_MAM00906m" sboTerm="SBO:0000247" id="M_MAM00906m" name="3-oxotetradecanoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C35H56N7O18P3S">
         <annotation>
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-            <rdf:Description rdf:about="#MAM00906m">
+            <rdf:Description rdf:about="#M_MAM00906m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/3otdcoa"/>
@@ -22437,10 +22436,10 @@
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-      <species metaid="MAM00906x" sboTerm="SBO:0000247" id="MAM00906x" name="3-oxotetradecanoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C35H56N7O18P3S">
+      <species metaid="M_MAM00906x" sboTerm="SBO:0000247" id="M_MAM00906x" name="3-oxotetradecanoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C35H56N7O18P3S">
         <annotation>
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-            <rdf:Description rdf:about="#MAM00906x">
+            <rdf:Description rdf:about="#M_MAM00906x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/3otdcoa"/>
@@ -22455,10 +22454,10 @@
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-      <species metaid="MAM00907c" sboTerm="SBO:0000247" id="MAM00907c" name="3-oxotricosanoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C44H74N7O18P3S">
+      <species metaid="M_MAM00907c" sboTerm="SBO:0000247" id="M_MAM00907c" name="3-oxotricosanoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C44H74N7O18P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00907c">
+            <rdf:Description rdf:about="#M_MAM00907c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M00907"/>
@@ -22468,10 +22467,10 @@
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-      <species metaid="MAM00908c" sboTerm="SBO:0000247" id="MAM00908c" name="3-oxotridecanoyl-[ACP]" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H43N2O9PRS">
+      <species metaid="M_MAM00908c" sboTerm="SBO:0000247" id="M_MAM00908c" name="3-oxotridecanoyl-[ACP]" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H43N2O9PRS">
         <annotation>
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-            <rdf:Description rdf:about="#MAM00908c">
+            <rdf:Description rdf:about="#M_MAM00908c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M00908"/>
@@ -22481,10 +22480,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00909m" sboTerm="SBO:0000247" id="MAM00909m" name="3-oxotridecanoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C34H54N7O18P3S">
+      <species metaid="M_MAM00909m" sboTerm="SBO:0000247" id="M_MAM00909m" name="3-oxotridecanoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C34H54N7O18P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00909m">
+            <rdf:Description rdf:about="#M_MAM00909m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M00909"/>
@@ -22494,10 +22493,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00910c" sboTerm="SBO:0000247" id="MAM00910c" name="3-oxoundecanoyl-[ACP]" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C22H39N2O9PRS">
+      <species metaid="M_MAM00910c" sboTerm="SBO:0000247" id="M_MAM00910c" name="3-oxoundecanoyl-[ACP]" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C22H39N2O9PRS">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00910c">
+            <rdf:Description rdf:about="#M_MAM00910c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M00910"/>
@@ -22507,10 +22506,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00911m" sboTerm="SBO:0000247" id="MAM00911m" name="3-oxoundecanoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C32H50N7O18P3S">
+      <species metaid="M_MAM00911m" sboTerm="SBO:0000247" id="M_MAM00911m" name="3-oxoundecanoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C32H50N7O18P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00911m">
+            <rdf:Description rdf:about="#M_MAM00911m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M00911"/>
@@ -22520,10 +22519,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00912c" sboTerm="SBO:0000247" id="MAM00912c" name="3-phosphoadenylylselenate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C10H11N5O13P2Se">
+      <species metaid="M_MAM00912c" sboTerm="SBO:0000247" id="M_MAM00912c" name="3-phosphoadenylylselenate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C10H11N5O13P2Se">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00912c">
+            <rdf:Description rdf:about="#M_MAM00912c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/3padsel"/>
@@ -22538,10 +22537,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00913c" sboTerm="SBO:0000247" id="MAM00913c" name="3-phospho-D-glycerate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C3H4O7P">
+      <species metaid="M_MAM00913c" sboTerm="SBO:0000247" id="M_MAM00913c" name="3-phospho-D-glycerate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C3H4O7P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00913c">
+            <rdf:Description rdf:about="#M_MAM00913c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/3pg"/>
@@ -22556,10 +22555,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00913m" sboTerm="SBO:0000247" id="MAM00913m" name="3-phospho-D-glycerate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C3H4O7P">
+      <species metaid="M_MAM00913m" sboTerm="SBO:0000247" id="M_MAM00913m" name="3-phospho-D-glycerate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C3H4O7P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00913m">
+            <rdf:Description rdf:about="#M_MAM00913m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/3pg"/>
@@ -22574,10 +22573,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00914c" sboTerm="SBO:0000247" id="MAM00914c" name="3-phosphonooxypyruvate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C3H2O7P">
+      <species metaid="M_MAM00914c" sboTerm="SBO:0000247" id="M_MAM00914c" name="3-phosphonooxypyruvate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C3H2O7P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00914c">
+            <rdf:Description rdf:about="#M_MAM00914c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/3php"/>
@@ -22592,10 +22591,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00915c" sboTerm="SBO:0000247" id="MAM00915c" name="3-phosphopolynucleotide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C15H22O19P3R3">
+      <species metaid="M_MAM00915c" sboTerm="SBO:0000247" id="M_MAM00915c" name="3-phosphopolynucleotide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C15H22O19P3R3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00915c">
+            <rdf:Description rdf:about="#M_MAM00915c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:1359"/>
@@ -22608,10 +22607,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00916c" sboTerm="SBO:0000247" id="MAM00916c" name="3-phosphoserine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C3H6NO6P">
+      <species metaid="M_MAM00916c" sboTerm="SBO:0000247" id="M_MAM00916c" name="3-phosphoserine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C3H6NO6P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00916c">
+            <rdf:Description rdf:about="#M_MAM00916c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pser__L"/>
@@ -22627,10 +22626,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00917c" sboTerm="SBO:0000247" id="MAM00917c" name="3-succinoylpyridine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H9NO3">
+      <species metaid="M_MAM00917c" sboTerm="SBO:0000247" id="M_MAM00917c" name="3-succinoylpyridine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H9NO3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00917c">
+            <rdf:Description rdf:about="#M_MAM00917c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C19569"/>
@@ -22642,10 +22641,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00918c" sboTerm="SBO:0000247" id="MAM00918c" name="3-sulfinoalanine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C3H5NO4S">
+      <species metaid="M_MAM00918c" sboTerm="SBO:0000247" id="M_MAM00918c" name="3-sulfinoalanine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C3H5NO4S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00918c">
+            <rdf:Description rdf:about="#M_MAM00918c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/3sala"/>
@@ -22660,10 +22659,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00918m" sboTerm="SBO:0000247" id="MAM00918m" name="3-sulfinoalanine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C3H5NO4S">
+      <species metaid="M_MAM00918m" sboTerm="SBO:0000247" id="M_MAM00918m" name="3-sulfinoalanine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C3H5NO4S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00918m">
+            <rdf:Description rdf:about="#M_MAM00918m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/3sala"/>
@@ -22678,10 +22677,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00919c" sboTerm="SBO:0000247" id="MAM00919c" name="3-sulfinylpyruvic acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C3H2O5S">
+      <species metaid="M_MAM00919c" sboTerm="SBO:0000247" id="M_MAM00919c" name="3-sulfinylpyruvic acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C3H2O5S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00919c">
+            <rdf:Description rdf:about="#M_MAM00919c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/3snpyr"/>
@@ -22695,10 +22694,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00919m" sboTerm="SBO:0000247" id="MAM00919m" name="3-sulfinylpyruvic acid" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C3H2O5S">
+      <species metaid="M_MAM00919m" sboTerm="SBO:0000247" id="M_MAM00919m" name="3-sulfinylpyruvic acid" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C3H2O5S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00919m">
+            <rdf:Description rdf:about="#M_MAM00919m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/3snpyr"/>
@@ -22712,10 +22711,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00920c" sboTerm="SBO:0000247" id="MAM00920c" name="3-sulfopyruvate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C3H2O6S">
+      <species metaid="M_MAM00920c" sboTerm="SBO:0000247" id="M_MAM00920c" name="3-sulfopyruvate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C3H2O6S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00920c">
+            <rdf:Description rdf:about="#M_MAM00920c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/3spyr"/>
@@ -22731,10 +22730,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00920m" sboTerm="SBO:0000247" id="MAM00920m" name="3-sulfopyruvate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C3H2O6S">
+      <species metaid="M_MAM00920m" sboTerm="SBO:0000247" id="M_MAM00920m" name="3-sulfopyruvate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C3H2O6S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00920m">
+            <rdf:Description rdf:about="#M_MAM00920m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/3spyr"/>
@@ -22750,10 +22749,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00922c" sboTerm="SBO:0000247" id="MAM00922c" name="3-ureidoisobutyrate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C5H9N2O3">
+      <species metaid="M_MAM00922c" sboTerm="SBO:0000247" id="M_MAM00922c" name="3-ureidoisobutyrate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C5H9N2O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00922c">
+            <rdf:Description rdf:about="#M_MAM00922c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/3uib"/>
@@ -22769,10 +22768,10 @@
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-      <species metaid="MAM00923c" sboTerm="SBO:0000247" id="MAM00923c" name="3-ureidopropionate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C4H7N2O3">
+      <species metaid="M_MAM00923c" sboTerm="SBO:0000247" id="M_MAM00923c" name="3-ureidopropionate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C4H7N2O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00923c">
+            <rdf:Description rdf:about="#M_MAM00923c">
               <bqbiol:is>
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                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/cala"/>
@@ -22788,10 +22787,10 @@
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-      <species metaid="MAM00924c" sboTerm="SBO:0000247" id="MAM00924c" name="4-(2-amino-3-hydroxyphenyl)-2,4-dioxobutanoate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H8NO5">
+      <species metaid="M_MAM00924c" sboTerm="SBO:0000247" id="M_MAM00924c" name="4-(2-amino-3-hydroxyphenyl)-2,4-dioxobutanoate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H8NO5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00924c">
+            <rdf:Description rdf:about="#M_MAM00924c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/42A3HP24DB"/>
@@ -22806,10 +22805,10 @@
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         </annotation>
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-      <species metaid="MAM00925c" sboTerm="SBO:0000247" id="MAM00925c" name="4-(2-amino-3-hydroxyphenyl)-4-oxobutanoic acid-O-glucoside" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C16H20NO9">
+      <species metaid="M_MAM00925c" sboTerm="SBO:0000247" id="M_MAM00925c" name="4-(2-amino-3-hydroxyphenyl)-4-oxobutanoic acid-O-glucoside" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C16H20NO9">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00925c">
+            <rdf:Description rdf:about="#M_MAM00925c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM166294"/>
@@ -22821,10 +22820,10 @@
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         </annotation>
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-      <species metaid="MAM00926c" sboTerm="SBO:0000247" id="MAM00926c" name="4-(2-aminophenyl)-2,4-dioxobutanoate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H8NO4">
+      <species metaid="M_MAM00926c" sboTerm="SBO:0000247" id="M_MAM00926c" name="4-(2-aminophenyl)-2,4-dioxobutanoate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H8NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00926c">
+            <rdf:Description rdf:about="#M_MAM00926c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/4aphdob"/>
@@ -22840,10 +22839,10 @@
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         </annotation>
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-      <species metaid="MAM00927c" sboTerm="SBO:0000247" id="MAM00927c" name="4-(methylnitrosamino)-1-(1-oxido-3-pyridinyl)-1-butanone" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H13N3O3">
+      <species metaid="M_MAM00927c" sboTerm="SBO:0000247" id="M_MAM00927c" name="4-(methylnitrosamino)-1-(1-oxido-3-pyridinyl)-1-butanone" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H13N3O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00927c">
+            <rdf:Description rdf:about="#M_MAM00927c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C19602"/>
@@ -22855,10 +22854,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM00928c" sboTerm="SBO:0000247" id="MAM00928c" name="4-(methylnitrosamino)-1-(3-pyridyl)-1-butanol glucuronide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C16H23N3O8">
+      <species metaid="M_MAM00928c" sboTerm="SBO:0000247" id="M_MAM00928c" name="4-(methylnitrosamino)-1-(3-pyridyl)-1-butanol glucuronide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C16H23N3O8">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00928c">
+            <rdf:Description rdf:about="#M_MAM00928c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C19605"/>
@@ -22870,10 +22869,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM00929c" sboTerm="SBO:0000247" id="MAM00929c" name="4-(methylnitrosamino)-1-(3-pyridyl)-1-butanol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H15N3O2">
+      <species metaid="M_MAM00929c" sboTerm="SBO:0000247" id="M_MAM00929c" name="4-(methylnitrosamino)-1-(3-pyridyl)-1-butanol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H15N3O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00929c">
+            <rdf:Description rdf:about="#M_MAM00929c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C19574"/>
@@ -22885,10 +22884,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM00930c" sboTerm="SBO:0000247" id="MAM00930c" name="4-(methylnitrosamino)-1-(3-pyridyl-N-oxide)-1-butanol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H15N3O3">
+      <species metaid="M_MAM00930c" sboTerm="SBO:0000247" id="M_MAM00930c" name="4-(methylnitrosamino)-1-(3-pyridyl-N-oxide)-1-butanol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H15N3O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00930c">
+            <rdf:Description rdf:about="#M_MAM00930c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C19603"/>
@@ -22900,10 +22899,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM00931c" sboTerm="SBO:0000247" id="MAM00931c" name="4-(nitrosoamino)-1-(3-pyridinyl)-1-butanone" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H11N3O2">
+      <species metaid="M_MAM00931c" sboTerm="SBO:0000247" id="M_MAM00931c" name="4-(nitrosoamino)-1-(3-pyridinyl)-1-butanone" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H11N3O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00931c">
+            <rdf:Description rdf:about="#M_MAM00931c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C19564"/>
@@ -22915,10 +22914,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00932c" sboTerm="SBO:0000247" id="MAM00932c" name="4-(n-nitrosomethylamino)-1-(3-pyridyl)-1-butanone" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H13N3O2">
+      <species metaid="M_MAM00932c" sboTerm="SBO:0000247" id="M_MAM00932c" name="4-(n-nitrosomethylamino)-1-(3-pyridyl)-1-butanone" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H13N3O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00932c">
+            <rdf:Description rdf:about="#M_MAM00932c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C16453"/>
@@ -22930,10 +22929,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00932e" sboTerm="SBO:0000247" id="MAM00932e" name="4-(n-nitrosomethylamino)-1-(3-pyridyl)-1-butanone" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H13N3O2">
+      <species metaid="M_MAM00932e" sboTerm="SBO:0000247" id="M_MAM00932e" name="4-(n-nitrosomethylamino)-1-(3-pyridyl)-1-butanone" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H13N3O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00932e">
+            <rdf:Description rdf:about="#M_MAM00932e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C16453"/>
@@ -22945,10 +22944,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00933c" sboTerm="SBO:0000247" id="MAM00933c" name="4(R),8-dimethyl-nonanoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C32H52N7O17P3S">
+      <species metaid="M_MAM00933c" sboTerm="SBO:0000247" id="M_MAM00933c" name="4(R),8-dimethyl-nonanoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C32H52N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00933c">
+            <rdf:Description rdf:about="#M_MAM00933c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dmnoncoa"/>
@@ -22961,10 +22960,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM00933m" sboTerm="SBO:0000247" id="MAM00933m" name="4(R),8-dimethyl-nonanoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C32H52N7O17P3S">
+      <species metaid="M_MAM00933m" sboTerm="SBO:0000247" id="M_MAM00933m" name="4(R),8-dimethyl-nonanoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C32H52N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00933m">
+            <rdf:Description rdf:about="#M_MAM00933m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dmnoncoa"/>
@@ -22977,10 +22976,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00933x" sboTerm="SBO:0000247" id="MAM00933x" name="4(R),8-dimethyl-nonanoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C32H52N7O17P3S">
+      <species metaid="M_MAM00933x" sboTerm="SBO:0000247" id="M_MAM00933x" name="4(R),8-dimethyl-nonanoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C32H52N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00933x">
+            <rdf:Description rdf:about="#M_MAM00933x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dmnoncoa"/>
@@ -22993,10 +22992,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00934m" sboTerm="SBO:0000247" id="MAM00934m" name="4(R),8-dimethyl-trans-2-nonenoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C32H50N7O17P3S">
+      <species metaid="M_MAM00934m" sboTerm="SBO:0000247" id="M_MAM00934m" name="4(R),8-dimethyl-trans-2-nonenoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C32H50N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00934m">
+            <rdf:Description rdf:about="#M_MAM00934m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM468808"/>
@@ -23007,10 +23006,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00935m" sboTerm="SBO:0000247" id="MAM00935m" name="4(R)-hydroxy-dodec-(6Z)-enoate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C12H21O3">
+      <species metaid="M_MAM00935m" sboTerm="SBO:0000247" id="M_MAM00935m" name="4(R)-hydroxy-dodec-(6Z)-enoate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C12H21O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00935m">
+            <rdf:Description rdf:about="#M_MAM00935m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/CE5310"/>
@@ -23020,10 +23019,10 @@
           </rdf:RDF>
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-      <species metaid="MAM00936m" sboTerm="SBO:0000247" id="MAM00936m" name="4(S)-hydroxy-dodec-(6Z)-enoate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C12H21O3">
+      <species metaid="M_MAM00936m" sboTerm="SBO:0000247" id="M_MAM00936m" name="4(S)-hydroxy-dodec-(6Z)-enoate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C12H21O3">
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-            <rdf:Description rdf:about="#MAM00936m">
+            <rdf:Description rdf:about="#M_MAM00936m">
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                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/CE5322"/>
@@ -23033,10 +23032,10 @@
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-      <species metaid="MAM00941c" sboTerm="SBO:0000247" id="MAM00941c" name="4,4-dimethyl-5alpha-cholesta-8,14,24-trien-3beta-ol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C29H46O">
+      <species metaid="M_MAM00941c" sboTerm="SBO:0000247" id="M_MAM00941c" name="4,4-dimethyl-5alpha-cholesta-8,14,24-trien-3beta-ol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C29H46O">
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-            <rdf:Description rdf:about="#MAM00941c">
+            <rdf:Description rdf:about="#M_MAM00941c">
               <bqbiol:is>
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                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/44mctr"/>
@@ -23055,10 +23054,10 @@
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-      <species metaid="MAM00942c" sboTerm="SBO:0000247" id="MAM00942c" name="4,4-dimethyl-5alpha-cholesta-8,14-dien-3-beta-ol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C29H48O">
+      <species metaid="M_MAM00942c" sboTerm="SBO:0000247" id="M_MAM00942c" name="4,4-dimethyl-5alpha-cholesta-8,14-dien-3-beta-ol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C29H48O">
         <annotation>
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-            <rdf:Description rdf:about="#MAM00942c">
+            <rdf:Description rdf:about="#M_MAM00942c">
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                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/LMST01010277"/>
@@ -23070,10 +23069,10 @@
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-      <species metaid="MAM00943c" sboTerm="SBO:0000247" id="MAM00943c" name="4,4-dimethyl-5alpha-cholesta-8-en-3-beta-ol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C29H50O">
+      <species metaid="M_MAM00943c" sboTerm="SBO:0000247" id="M_MAM00943c" name="4,4-dimethyl-5alpha-cholesta-8-en-3-beta-ol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C29H50O">
         <annotation>
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-            <rdf:Description rdf:about="#MAM00943c">
+            <rdf:Description rdf:about="#M_MAM00943c">
               <bqbiol:is>
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                   <rdf:li rdf:resource="https://identifiers.org/hmdb/HMDB06840"/>
@@ -23089,10 +23088,10 @@
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-      <species metaid="MAM00944c" sboTerm="SBO:0000247" id="MAM00944c" name="4,5-dihydro-4-hydroxy-5-S-glutathionyl-benzo[a]pyrene" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C30H29N3O7S">
+      <species metaid="M_MAM00944c" sboTerm="SBO:0000247" id="M_MAM00944c" name="4,5-dihydro-4-hydroxy-5-S-glutathionyl-benzo[a]pyrene" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C30H29N3O7S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00944c">
+            <rdf:Description rdf:about="#M_MAM00944c">
               <bqbiol:is>
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                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C14855"/>
@@ -23104,10 +23103,10 @@
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-      <species metaid="MAM00945c" sboTerm="SBO:0000247" id="MAM00945c" name="4,6,7-trihydroxy-1,2,3,4-tetrahydroisoquinoline" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C9H12NO3">
+      <species metaid="M_MAM00945c" sboTerm="SBO:0000247" id="M_MAM00945c" name="4,6,7-trihydroxy-1,2,3,4-tetrahydroisoquinoline" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C9H12NO3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00945c">
+            <rdf:Description rdf:about="#M_MAM00945c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM151064"/>
@@ -23119,10 +23118,10 @@
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-      <species metaid="MAM00946c" sboTerm="SBO:0000247" id="MAM00946c" name="4,6-dideoxy-4-oxo-dTDP-D-glucose" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C16H22N2O15P2">
+      <species metaid="M_MAM00946c" sboTerm="SBO:0000247" id="M_MAM00946c" name="4,6-dideoxy-4-oxo-dTDP-D-glucose" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C16H22N2O15P2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00946c">
+            <rdf:Description rdf:about="#M_MAM00946c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dtdp4d6dg"/>
@@ -23138,10 +23137,10 @@
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-      <species metaid="MAM00947c" sboTerm="SBO:0000247" id="MAM00947c" name="4,6-dihydroxyquinoline" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H7NO2">
+      <species metaid="M_MAM00947c" sboTerm="SBO:0000247" id="M_MAM00947c" name="4,6-dihydroxyquinoline" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H7NO2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00947c">
+            <rdf:Description rdf:about="#M_MAM00947c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/46dhoxquin"/>
@@ -23155,10 +23154,10 @@
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-      <species metaid="MAM00948x" sboTerm="SBO:0000247" id="MAM00948x" name="4,8,12-trimethyltridecanoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C37H62N7O17P3S">
+      <species metaid="M_MAM00948x" sboTerm="SBO:0000247" id="M_MAM00948x" name="4,8,12-trimethyltridecanoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C37H62N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00948x">
+            <rdf:Description rdf:about="#M_MAM00948x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:15495"/>
@@ -23171,10 +23170,10 @@
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-      <species metaid="MAM00949c" sboTerm="SBO:0000247" id="MAM00949c" name="4,8-dihydroxyquinoline" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H7NO2">
+      <species metaid="M_MAM00949c" sboTerm="SBO:0000247" id="M_MAM00949c" name="4,8-dihydroxyquinoline" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H7NO2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00949c">
+            <rdf:Description rdf:about="#M_MAM00949c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/48dhoxquin"/>
@@ -23189,10 +23188,10 @@
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-      <species metaid="MAM00950c" sboTerm="SBO:0000247" id="MAM00950c" name="4,8-dimethylnonanoylcarnitine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H35NO4">
+      <species metaid="M_MAM00950c" sboTerm="SBO:0000247" id="M_MAM00950c" name="4,8-dimethylnonanoylcarnitine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H35NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00950c">
+            <rdf:Description rdf:about="#M_MAM00950c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dmnoncrn"/>
@@ -23205,10 +23204,10 @@
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-      <species metaid="MAM00950m" sboTerm="SBO:0000247" id="MAM00950m" name="4,8-dimethylnonanoylcarnitine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H35NO4">
+      <species metaid="M_MAM00950m" sboTerm="SBO:0000247" id="M_MAM00950m" name="4,8-dimethylnonanoylcarnitine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H35NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00950m">
+            <rdf:Description rdf:about="#M_MAM00950m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dmnoncrn"/>
@@ -23221,10 +23220,10 @@
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         </annotation>
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-      <species metaid="MAM00951c" sboTerm="SBO:0000247" id="MAM00951c" name="4-[(hydroxymethyl)nitrosoamino]-1-(3-pyridinyl)-1-butanone" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H13N3O3">
+      <species metaid="M_MAM00951c" sboTerm="SBO:0000247" id="M_MAM00951c" name="4-[(hydroxymethyl)nitrosoamino]-1-(3-pyridinyl)-1-butanone" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H13N3O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00951c">
+            <rdf:Description rdf:about="#M_MAM00951c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C19563"/>
@@ -23236,10 +23235,10 @@
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         </annotation>
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-      <species metaid="MAM00952c" sboTerm="SBO:0000247" id="MAM00952c" name="4-acetamidobutanoate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H10NO3">
+      <species metaid="M_MAM00952c" sboTerm="SBO:0000247" id="M_MAM00952c" name="4-acetamidobutanoate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H10NO3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00952c">
+            <rdf:Description rdf:about="#M_MAM00952c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/4aabutn"/>
@@ -23255,10 +23254,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM00953c" sboTerm="SBO:0000247" id="MAM00953c" name="4alpha-carboxy-4beta-methyl-5alpha-cholesta-8,24-dien-3beta-ol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C29H46O3">
+      <species metaid="M_MAM00953c" sboTerm="SBO:0000247" id="M_MAM00953c" name="4alpha-carboxy-4beta-methyl-5alpha-cholesta-8,24-dien-3beta-ol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C29H46O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00953c">
+            <rdf:Description rdf:about="#M_MAM00953c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C15808"/>
@@ -23273,10 +23272,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00954c" sboTerm="SBO:0000247" id="MAM00954c" name="4alpha-carboxy-4beta-methyl-5alpha-cholesta-8-en-3beta-ol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C29H48O3">
+      <species metaid="M_MAM00954c" sboTerm="SBO:0000247" id="M_MAM00954c" name="4alpha-carboxy-4beta-methyl-5alpha-cholesta-8-en-3beta-ol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C29H48O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00954c">
+            <rdf:Description rdf:about="#M_MAM00954c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM10246"/>
@@ -23287,10 +23286,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM00955c" sboTerm="SBO:0000247" id="MAM00955c" name="4alpha-carboxy-5alpha-cholesta-8,24-dien-3beta-ol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C28H44O3">
+      <species metaid="M_MAM00955c" sboTerm="SBO:0000247" id="M_MAM00955c" name="4alpha-carboxy-5alpha-cholesta-8,24-dien-3beta-ol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C28H44O3">
         <annotation>
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+            <rdf:Description rdf:about="#M_MAM00955c">
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@@ -23301,10 +23300,10 @@
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+      <species metaid="M_MAM00956c" sboTerm="SBO:0000247" id="M_MAM00956c" name="4alpha-carboxy-5alpha-cholesta-8-en-3beta-ol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C28H46O3">
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+            <rdf:Description rdf:about="#M_MAM00956c">
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@@ -23315,10 +23314,10 @@
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+      <species metaid="M_MAM00957c" sboTerm="SBO:0000247" id="M_MAM00957c" name="4alpha-formyl-4beta-methyl-5alpha-cholesta-8,24-dien-3beta-ol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C29H46O2">
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+            <rdf:Description rdf:about="#M_MAM00957c">
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@@ -23329,10 +23328,10 @@
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+      <species metaid="M_MAM00958c" sboTerm="SBO:0000247" id="M_MAM00958c" name="4alpha-formyl-4beta-methyl-5alpha-cholesta-8-en-3beta-ol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C29H48O2">
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-            <rdf:Description rdf:about="#MAM00958c">
+            <rdf:Description rdf:about="#M_MAM00958c">
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@@ -23343,10 +23342,10 @@
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+      <species metaid="M_MAM00959c" sboTerm="SBO:0000247" id="M_MAM00959c" name="4alpha-formyl-5alpha-cholesta-8,24-dien-3beta-ol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C28H44O2">
         <annotation>
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-            <rdf:Description rdf:about="#MAM00959c">
+            <rdf:Description rdf:about="#M_MAM00959c">
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                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM89470"/>
@@ -23357,10 +23356,10 @@
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+      <species metaid="M_MAM00960c" sboTerm="SBO:0000247" id="M_MAM00960c" name="4alpha-formyl-5alpha-cholesta-8-en-3beta-ol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C28H46O2">
         <annotation>
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-            <rdf:Description rdf:about="#MAM00960c">
+            <rdf:Description rdf:about="#M_MAM00960c">
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                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM10255"/>
@@ -23371,10 +23370,10 @@
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+      <species metaid="M_MAM00961c" sboTerm="SBO:0000247" id="M_MAM00961c" name="4alpha-hydroxymethyl-4beta-methyl-5alpha-cholesta-8,24-dien-3beta-ol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C29H48O2">
         <annotation>
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-            <rdf:Description rdf:about="#MAM00961c">
+            <rdf:Description rdf:about="#M_MAM00961c">
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                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM6114"/>
@@ -23385,10 +23384,10 @@
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+      <species metaid="M_MAM00962c" sboTerm="SBO:0000247" id="M_MAM00962c" name="4alpha-hydroxymethyl-4beta-methyl-5alpha-cholesta-8-en-3beta-ol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C29H50O2">
         <annotation>
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-            <rdf:Description rdf:about="#MAM00962c">
+            <rdf:Description rdf:about="#M_MAM00962c">
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                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM10260"/>
@@ -23399,10 +23398,10 @@
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+      <species metaid="M_MAM00963c" sboTerm="SBO:0000247" id="M_MAM00963c" name="4alpha-hydroxymethyl-5alpha-cholesta-8,24-dien-3beta-ol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C28H46O2">
         <annotation>
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-            <rdf:Description rdf:about="#MAM00963c">
+            <rdf:Description rdf:about="#M_MAM00963c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM89469"/>
@@ -23413,10 +23412,10 @@
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+      <species metaid="M_MAM00964c" sboTerm="SBO:0000247" id="M_MAM00964c" name="4alpha-hydroxymethyl-5alpha-cholesta-8-en-3beta-ol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C28H48O2">
         <annotation>
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-            <rdf:Description rdf:about="#MAM00964c">
+            <rdf:Description rdf:about="#M_MAM00964c">
               <bqbiol:is>
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                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM10262"/>
@@ -23427,10 +23426,10 @@
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-      <species metaid="MAM00965c" sboTerm="SBO:0000247" id="MAM00965c" name="4alpha-hydroxytetrahydrobiopterin" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H15N5O4">
+      <species metaid="M_MAM00965c" sboTerm="SBO:0000247" id="M_MAM00965c" name="4alpha-hydroxytetrahydrobiopterin" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H15N5O4">
         <annotation>
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-            <rdf:Description rdf:about="#MAM00965c">
+            <rdf:Description rdf:about="#M_MAM00965c">
               <bqbiol:is>
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                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/thbpt4acam"/>
@@ -23446,10 +23445,10 @@
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-      <species metaid="MAM00965n" sboTerm="SBO:0000247" id="MAM00965n" name="4alpha-hydroxytetrahydrobiopterin" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H15N5O4">
+      <species metaid="M_MAM00965n" sboTerm="SBO:0000247" id="M_MAM00965n" name="4alpha-hydroxytetrahydrobiopterin" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H15N5O4">
         <annotation>
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-            <rdf:Description rdf:about="#MAM00965n">
+            <rdf:Description rdf:about="#M_MAM00965n">
               <bqbiol:is>
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                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/thbpt4acam"/>
@@ -23465,10 +23464,10 @@
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+      <species metaid="M_MAM00967c" sboTerm="SBO:0000247" id="M_MAM00967c" name="4alpha-methyl-cholesta-8-enol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C28H48O">
         <annotation>
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-            <rdf:Description rdf:about="#MAM00967c">
+            <rdf:Description rdf:about="#M_MAM00967c">
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                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM4376"/>
@@ -23479,10 +23478,10 @@
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-      <species metaid="MAM00968c" sboTerm="SBO:0000247" id="MAM00968c" name="4alpha-methylzymosterol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C28H46O">
+      <species metaid="M_MAM00968c" sboTerm="SBO:0000247" id="M_MAM00968c" name="4alpha-methylzymosterol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C28H46O">
         <annotation>
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-            <rdf:Description rdf:about="#MAM00968c">
+            <rdf:Description rdf:about="#M_MAM00968c">
               <bqbiol:is>
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                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C05103"/>
@@ -23496,10 +23495,10 @@
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+      <species metaid="M_MAM00969c" sboTerm="SBO:0000247" id="M_MAM00969c" name="4-aminobutanal" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C4H10NO">
         <annotation>
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-            <rdf:Description rdf:about="#MAM00969c">
+            <rdf:Description rdf:about="#M_MAM00969c">
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@@ -23515,10 +23514,10 @@
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+      <species metaid="M_MAM00969m" sboTerm="SBO:0000247" id="M_MAM00969m" name="4-aminobutanal" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C4H10NO">
         <annotation>
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-            <rdf:Description rdf:about="#MAM00969m">
+            <rdf:Description rdf:about="#M_MAM00969m">
               <bqbiol:is>
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                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/4abutn"/>
@@ -23534,10 +23533,10 @@
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+      <species metaid="M_MAM00969e" sboTerm="SBO:0000247" id="M_MAM00969e" name="4-aminobutanal" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C4H10NO">
         <annotation>
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+            <rdf:Description rdf:about="#M_MAM00969e">
               <bqbiol:is>
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                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/4abutn"/>
@@ -23553,10 +23552,10 @@
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       </species>
-      <species metaid="MAM00970c" sboTerm="SBO:0000247" id="MAM00970c" name="4-aminobutyrate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H9NO2">
+      <species metaid="M_MAM00970c" sboTerm="SBO:0000247" id="M_MAM00970c" name="4-aminobutyrate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H9NO2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00970c">
+            <rdf:Description rdf:about="#M_MAM00970c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/4abut"/>
@@ -23573,10 +23572,10 @@
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-      <species metaid="MAM00970l" sboTerm="SBO:0000247" id="MAM00970l" name="4-aminobutyrate" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H9NO2">
+      <species metaid="M_MAM00970l" sboTerm="SBO:0000247" id="M_MAM00970l" name="4-aminobutyrate" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H9NO2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00970l">
+            <rdf:Description rdf:about="#M_MAM00970l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/4abut"/>
@@ -23593,10 +23592,10 @@
           </rdf:RDF>
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-      <species metaid="MAM00970m" sboTerm="SBO:0000247" id="MAM00970m" name="4-aminobutyrate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H9NO2">
+      <species metaid="M_MAM00970m" sboTerm="SBO:0000247" id="M_MAM00970m" name="4-aminobutyrate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H9NO2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00970m">
+            <rdf:Description rdf:about="#M_MAM00970m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/4abut"/>
@@ -23613,10 +23612,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM00970e" sboTerm="SBO:0000247" id="MAM00970e" name="4-aminobutyrate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H9NO2">
+      <species metaid="M_MAM00970e" sboTerm="SBO:0000247" id="M_MAM00970e" name="4-aminobutyrate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H9NO2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00970e">
+            <rdf:Description rdf:about="#M_MAM00970e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/4abut"/>
@@ -23633,10 +23632,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM00971c" sboTerm="SBO:0000247" id="MAM00971c" name="4-androstene-3,17-dione" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H26O2">
+      <species metaid="M_MAM00971c" sboTerm="SBO:0000247" id="M_MAM00971c" name="4-androstene-3,17-dione" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H26O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00971c">
+            <rdf:Description rdf:about="#M_MAM00971c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/andrstndn"/>
@@ -23655,10 +23654,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00971r" sboTerm="SBO:0000247" id="MAM00971r" name="4-androstene-3,17-dione" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H26O2">
+      <species metaid="M_MAM00971r" sboTerm="SBO:0000247" id="M_MAM00971r" name="4-androstene-3,17-dione" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H26O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00971r">
+            <rdf:Description rdf:about="#M_MAM00971r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/andrstndn"/>
@@ -23677,10 +23676,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM00972c" sboTerm="SBO:0000247" id="MAM00972c" name="4-bromo-3,5-cyclohexadiene-1,2-dione" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H3BrO2">
+      <species metaid="M_MAM00972c" sboTerm="SBO:0000247" id="M_MAM00972c" name="4-bromo-3,5-cyclohexadiene-1,2-dione" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H3BrO2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00972c">
+            <rdf:Description rdf:about="#M_MAM00972c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C14846"/>
@@ -23692,10 +23691,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00973c" sboTerm="SBO:0000247" id="MAM00973c" name="4-bromocatechol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H5BrO2">
+      <species metaid="M_MAM00973c" sboTerm="SBO:0000247" id="M_MAM00973c" name="4-bromocatechol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H5BrO2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00973c">
+            <rdf:Description rdf:about="#M_MAM00973c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C14843"/>
@@ -23707,10 +23706,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00974c" sboTerm="SBO:0000247" id="MAM00974c" name="4-bromophenol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H5BrO">
+      <species metaid="M_MAM00974c" sboTerm="SBO:0000247" id="M_MAM00974c" name="4-bromophenol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H5BrO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00974c">
+            <rdf:Description rdf:about="#M_MAM00974c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C14453"/>
@@ -23722,10 +23721,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00975c" sboTerm="SBO:0000247" id="MAM00975c" name="4-bromophenol-2,3-epoxide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H5BrO2">
+      <species metaid="M_MAM00975c" sboTerm="SBO:0000247" id="M_MAM00975c" name="4-bromophenol-2,3-epoxide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H5BrO2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00975c">
+            <rdf:Description rdf:about="#M_MAM00975c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C14845"/>
@@ -23737,10 +23736,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00976c" sboTerm="SBO:0000247" id="MAM00976c" name="4-cholesten-7alpha,12alpha,24(S)-triol-3-one" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H44O4">
+      <species metaid="M_MAM00976c" sboTerm="SBO:0000247" id="M_MAM00976c" name="4-cholesten-7alpha,12alpha,24(S)-triol-3-one" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H44O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00976c">
+            <rdf:Description rdf:about="#M_MAM00976c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:48714"/>
@@ -23753,10 +23752,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00977c" sboTerm="SBO:0000247" id="MAM00977c" name="4-cholesten-7alpha,12alpha,27-triol-3-one" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H44O4">
+      <species metaid="M_MAM00977c" sboTerm="SBO:0000247" id="M_MAM00977c" name="4-cholesten-7alpha,12alpha,27-triol-3-one" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H44O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00977c">
+            <rdf:Description rdf:about="#M_MAM00977c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/LMST04030158"/>
@@ -23768,10 +23767,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00978c" sboTerm="SBO:0000247" id="MAM00978c" name="4-cholesten-7alpha,24(S)-diol-3-one" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H44O3">
+      <species metaid="M_MAM00978c" sboTerm="SBO:0000247" id="M_MAM00978c" name="4-cholesten-7alpha,24(S)-diol-3-one" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H44O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00978c">
+            <rdf:Description rdf:about="#M_MAM00978c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/LMST04030170"/>
@@ -23784,10 +23783,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00979c" sboTerm="SBO:0000247" id="MAM00979c" name="4-cholesten-7alpha,27-diol-3-one" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H44O3">
+      <species metaid="M_MAM00979c" sboTerm="SBO:0000247" id="M_MAM00979c" name="4-cholesten-7alpha,27-diol-3-one" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H44O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00979c">
+            <rdf:Description rdf:about="#M_MAM00979c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/LMST04030157"/>
@@ -23799,10 +23798,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00980m" sboTerm="SBO:0000247" id="MAM00980m" name="4-cis-decenoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C31H48N7O17P3S">
+      <species metaid="M_MAM00980m" sboTerm="SBO:0000247" id="M_MAM00980m" name="4-cis-decenoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C31H48N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00980m">
+            <rdf:Description rdf:about="#M_MAM00980m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM90161"/>
@@ -23814,10 +23813,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00980x" sboTerm="SBO:0000247" id="MAM00980x" name="4-cis-decenoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C31H48N7O17P3S">
+      <species metaid="M_MAM00980x" sboTerm="SBO:0000247" id="M_MAM00980x" name="4-cis-decenoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C31H48N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00980x">
+            <rdf:Description rdf:about="#M_MAM00980x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM90161"/>
@@ -23829,10 +23828,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00981c" sboTerm="SBO:0000247" id="MAM00981c" name="4-coumarate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C9H7O3">
+      <species metaid="M_MAM00981c" sboTerm="SBO:0000247" id="M_MAM00981c" name="4-coumarate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C9H7O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00981c">
+            <rdf:Description rdf:about="#M_MAM00981c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/T4hcinnm"/>
@@ -23847,10 +23846,10 @@
           </rdf:RDF>
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-      <species metaid="MAM00982c" sboTerm="SBO:0000247" id="MAM00982c" name="4-coumaroyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C30H38N7O18P3S1">
+      <species metaid="M_MAM00982c" sboTerm="SBO:0000247" id="M_MAM00982c" name="4-coumaroyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C30H38N7O18P3S1">
         <annotation>
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-            <rdf:Description rdf:about="#MAM00982c">
+            <rdf:Description rdf:about="#M_MAM00982c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/coucoa"/>
@@ -23865,10 +23864,10 @@
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-      <species metaid="MAM00983c" sboTerm="SBO:0000247" id="MAM00983c" name="4-hydroperoxy-2-nonenal" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H16O3">
+      <species metaid="M_MAM00983c" sboTerm="SBO:0000247" id="M_MAM00983c" name="4-hydroperoxy-2-nonenal" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H16O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00983c">
+            <rdf:Description rdf:about="#M_MAM00983c">
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                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM14753"/>
@@ -23880,10 +23879,10 @@
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-      <species metaid="MAM00984c" sboTerm="SBO:0000247" id="MAM00984c" name="4-hydroperoxy-H4-neuroprostane" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C22H31O6">
+      <species metaid="M_MAM00984c" sboTerm="SBO:0000247" id="M_MAM00984c" name="4-hydroperoxy-H4-neuroprostane" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C22H31O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00984c">
+            <rdf:Description rdf:about="#M_MAM00984c">
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                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM163681"/>
@@ -23894,10 +23893,10 @@
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-      <species metaid="MAM00985c" sboTerm="SBO:0000247" id="MAM00985c" name="4-hydroxy-1-(3-pyridinyl)-1-butanone" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H11NO2">
+      <species metaid="M_MAM00985c" sboTerm="SBO:0000247" id="M_MAM00985c" name="4-hydroxy-1-(3-pyridinyl)-1-butanone" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H11NO2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00985c">
+            <rdf:Description rdf:about="#M_MAM00985c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C19565"/>
@@ -23909,10 +23908,10 @@
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-      <species metaid="MAM00986c" sboTerm="SBO:0000247" id="MAM00986c" name="4-hydroxy-17beta-estradiol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H24O3">
+      <species metaid="M_MAM00986c" sboTerm="SBO:0000247" id="M_MAM00986c" name="4-hydroxy-17beta-estradiol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H24O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00986c">
+            <rdf:Description rdf:about="#M_MAM00986c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hestratriol"/>
@@ -23928,10 +23927,10 @@
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-      <species metaid="MAM00986l" sboTerm="SBO:0000247" id="MAM00986l" name="4-hydroxy-17beta-estradiol" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H24O3">
+      <species metaid="M_MAM00986l" sboTerm="SBO:0000247" id="M_MAM00986l" name="4-hydroxy-17beta-estradiol" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H24O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00986l">
+            <rdf:Description rdf:about="#M_MAM00986l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hestratriol"/>
@@ -23947,10 +23946,10 @@
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         </annotation>
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-      <species metaid="MAM00986r" sboTerm="SBO:0000247" id="MAM00986r" name="4-hydroxy-17beta-estradiol" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H24O3">
+      <species metaid="M_MAM00986r" sboTerm="SBO:0000247" id="M_MAM00986r" name="4-hydroxy-17beta-estradiol" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H24O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00986r">
+            <rdf:Description rdf:about="#M_MAM00986r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hestratriol"/>
@@ -23966,10 +23965,10 @@
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-      <species metaid="MAM00986e" sboTerm="SBO:0000247" id="MAM00986e" name="4-hydroxy-17beta-estradiol" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H24O3">
+      <species metaid="M_MAM00986e" sboTerm="SBO:0000247" id="M_MAM00986e" name="4-hydroxy-17beta-estradiol" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H24O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00986e">
+            <rdf:Description rdf:about="#M_MAM00986e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hestratriol"/>
@@ -23985,10 +23984,10 @@
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-      <species metaid="MAM00987c" sboTerm="SBO:0000247" id="MAM00987c" name="4-hydroxy-17beta-estradiol-2-S-glutathione" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C28H38N3O9S">
+      <species metaid="M_MAM00987c" sboTerm="SBO:0000247" id="M_MAM00987c" name="4-hydroxy-17beta-estradiol-2-S-glutathione" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C28H38N3O9S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00987c">
+            <rdf:Description rdf:about="#M_MAM00987c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM151160"/>
@@ -23999,10 +23998,10 @@
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-      <species metaid="MAM00987m" sboTerm="SBO:0000247" id="MAM00987m" name="4-hydroxy-17beta-estradiol-2-S-glutathione" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C28H38N3O9S">
+      <species metaid="M_MAM00987m" sboTerm="SBO:0000247" id="M_MAM00987m" name="4-hydroxy-17beta-estradiol-2-S-glutathione" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C28H38N3O9S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00987m">
+            <rdf:Description rdf:about="#M_MAM00987m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM151160"/>
@@ -24013,10 +24012,10 @@
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-      <species metaid="MAM00987x" sboTerm="SBO:0000247" id="MAM00987x" name="4-hydroxy-17beta-estradiol-2-S-glutathione" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C28H38N3O9S">
+      <species metaid="M_MAM00987x" sboTerm="SBO:0000247" id="M_MAM00987x" name="4-hydroxy-17beta-estradiol-2-S-glutathione" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C28H38N3O9S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00987x">
+            <rdf:Description rdf:about="#M_MAM00987x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM151160"/>
@@ -24027,10 +24026,10 @@
           </rdf:RDF>
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-      <species metaid="MAM00987r" sboTerm="SBO:0000247" id="MAM00987r" name="4-hydroxy-17beta-estradiol-2-S-glutathione" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C28H38N3O9S">
+      <species metaid="M_MAM00987r" sboTerm="SBO:0000247" id="M_MAM00987r" name="4-hydroxy-17beta-estradiol-2-S-glutathione" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C28H38N3O9S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00987r">
+            <rdf:Description rdf:about="#M_MAM00987r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM151160"/>
@@ -24041,10 +24040,10 @@
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         </annotation>
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-      <species metaid="MAM00988c" sboTerm="SBO:0000247" id="MAM00988c" name="4-hydroxy-2-nonenal" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H16O2">
+      <species metaid="M_MAM00988c" sboTerm="SBO:0000247" id="M_MAM00988c" name="4-hydroxy-2-nonenal" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H16O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00988c">
+            <rdf:Description rdf:about="#M_MAM00988c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:58968"/>
@@ -24060,10 +24059,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM00989m" sboTerm="SBO:0000247" id="MAM00989m" name="4-hydroxy-2-oxoglutarate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C5H4O6">
+      <species metaid="M_MAM00989m" sboTerm="SBO:0000247" id="M_MAM00989m" name="4-hydroxy-2-oxoglutarate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C5H4O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00989m">
+            <rdf:Description rdf:about="#M_MAM00989m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/4h2oglt"/>
@@ -24079,10 +24078,10 @@
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         </annotation>
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-      <species metaid="MAM00990c" sboTerm="SBO:0000247" id="MAM00990c" name="4-hydroxy-2-quinolinecarboxylic acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H6NO3">
+      <species metaid="M_MAM00990c" sboTerm="SBO:0000247" id="M_MAM00990c" name="4-hydroxy-2-quinolinecarboxylic acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H6NO3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00990c">
+            <rdf:Description rdf:about="#M_MAM00990c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/kynate"/>
@@ -24098,10 +24097,10 @@
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         </annotation>
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-      <species metaid="MAM00991c" sboTerm="SBO:0000247" id="MAM00991c" name="4-hydroxy-3-nitrophenylacetate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C8H5NO5">
+      <species metaid="M_MAM00991c" sboTerm="SBO:0000247" id="M_MAM00991c" name="4-hydroxy-3-nitrophenylacetate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C8H5NO5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00991c">
+            <rdf:Description rdf:about="#M_MAM00991c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM31169"/>
@@ -24113,10 +24112,10 @@
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-      <species metaid="MAM00992c" sboTerm="SBO:0000247" id="MAM00992c" name="4-hydroxy-4-(methylnitrosoamino)-1-(3-pyridinyl)-1-butanone" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H13N3O3">
+      <species metaid="M_MAM00992c" sboTerm="SBO:0000247" id="M_MAM00992c" name="4-hydroxy-4-(methylnitrosoamino)-1-(3-pyridinyl)-1-butanone" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H13N3O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00992c">
+            <rdf:Description rdf:about="#M_MAM00992c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C19566"/>
@@ -24128,10 +24127,10 @@
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+      <species metaid="M_MAM00993c" sboTerm="SBO:0000247" id="M_MAM00993c" name="4-hydroxy-all-trans-retinoate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H27O3">
         <annotation>
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-            <rdf:Description rdf:about="#MAM00993c">
+            <rdf:Description rdf:about="#M_MAM00993c">
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                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:63795"/>
@@ -24146,10 +24145,10 @@
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-      <species metaid="MAM00993r" sboTerm="SBO:0000247" id="MAM00993r" name="4-hydroxy-all-trans-retinoate" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H27O3">
+      <species metaid="M_MAM00993r" sboTerm="SBO:0000247" id="M_MAM00993r" name="4-hydroxy-all-trans-retinoate" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H27O3">
         <annotation>
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-            <rdf:Description rdf:about="#MAM00993r">
+            <rdf:Description rdf:about="#M_MAM00993r">
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@@ -24164,10 +24163,10 @@
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-      <species metaid="MAM00994c" sboTerm="SBO:0000247" id="MAM00994c" name="4-hydroxy-all-trans-retinyl-acetate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C22H32O3">
+      <species metaid="M_MAM00994c" sboTerm="SBO:0000247" id="M_MAM00994c" name="4-hydroxy-all-trans-retinyl-acetate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C22H32O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00994c">
+            <rdf:Description rdf:about="#M_MAM00994c">
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                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM151179"/>
@@ -24179,10 +24178,10 @@
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-      <species metaid="MAM00994r" sboTerm="SBO:0000247" id="MAM00994r" name="4-hydroxy-all-trans-retinyl-acetate" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C22H32O3">
+      <species metaid="M_MAM00994r" sboTerm="SBO:0000247" id="M_MAM00994r" name="4-hydroxy-all-trans-retinyl-acetate" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C22H32O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00994r">
+            <rdf:Description rdf:about="#M_MAM00994r">
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                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM151179"/>
@@ -24194,10 +24193,10 @@
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-      <species metaid="MAM00995c" sboTerm="SBO:0000247" id="MAM00995c" name="4-hydroxybenzoate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C7H5O3">
+      <species metaid="M_MAM00995c" sboTerm="SBO:0000247" id="M_MAM00995c" name="4-hydroxybenzoate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C7H5O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00995c">
+            <rdf:Description rdf:about="#M_MAM00995c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/4hbz"/>
@@ -24213,10 +24212,10 @@
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-      <species metaid="MAM00995m" sboTerm="SBO:0000247" id="MAM00995m" name="4-hydroxybenzoate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C7H5O3">
+      <species metaid="M_MAM00995m" sboTerm="SBO:0000247" id="M_MAM00995m" name="4-hydroxybenzoate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C7H5O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00995m">
+            <rdf:Description rdf:about="#M_MAM00995m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/4hbz"/>
@@ -24232,10 +24231,10 @@
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         </annotation>
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-      <species metaid="MAM00996c" sboTerm="SBO:0000247" id="MAM00996c" name="4-hydroxybenzoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C28H36N7O18P3S">
+      <species metaid="M_MAM00996c" sboTerm="SBO:0000247" id="M_MAM00996c" name="4-hydroxybenzoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C28H36N7O18P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00996c">
+            <rdf:Description rdf:about="#M_MAM00996c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/4hbzcoa"/>
@@ -24248,10 +24247,10 @@
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-      <species metaid="MAM00997c" sboTerm="SBO:0000247" id="MAM00997c" name="4-hydroxy-D4-neuroprostane" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C22H31O5">
+      <species metaid="M_MAM00997c" sboTerm="SBO:0000247" id="M_MAM00997c" name="4-hydroxy-D4-neuroprostane" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C22H31O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00997c">
+            <rdf:Description rdf:about="#M_MAM00997c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM37505"/>
@@ -24263,10 +24262,10 @@
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-      <species metaid="MAM00998c" sboTerm="SBO:0000247" id="MAM00998c" name="4-hydroxy-debrisoquine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C10H14N3O">
+      <species metaid="M_MAM00998c" sboTerm="SBO:0000247" id="M_MAM00998c" name="4-hydroxy-debrisoquine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C10H14N3O">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00998c">
+            <rdf:Description rdf:about="#M_MAM00998c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/4hdebrisoquine"/>
@@ -24281,10 +24280,10 @@
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         </annotation>
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-      <species metaid="MAM00998e" sboTerm="SBO:0000247" id="MAM00998e" name="4-hydroxy-debrisoquine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C10H14N3O">
+      <species metaid="M_MAM00998e" sboTerm="SBO:0000247" id="M_MAM00998e" name="4-hydroxy-debrisoquine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C10H14N3O">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00998e">
+            <rdf:Description rdf:about="#M_MAM00998e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/4hdebrisoquine"/>
@@ -24299,10 +24298,10 @@
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         </annotation>
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-      <species metaid="MAM00999c" sboTerm="SBO:0000247" id="MAM00999c" name="4-hydroxy-E4-neuroprostane" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C22H31O5">
+      <species metaid="M_MAM00999c" sboTerm="SBO:0000247" id="M_MAM00999c" name="4-hydroxy-E4-neuroprostane" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C22H31O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00999c">
+            <rdf:Description rdf:about="#M_MAM00999c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM166383"/>
@@ -24313,10 +24312,10 @@
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-      <species metaid="MAM01000c" sboTerm="SBO:0000247" id="MAM01000c" name="4-hydroxyestrone" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H22O3">
+      <species metaid="M_MAM01000c" sboTerm="SBO:0000247" id="M_MAM01000c" name="4-hydroxyestrone" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H22O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01000c">
+            <rdf:Description rdf:about="#M_MAM01000c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/hmdb/HMDB05895"/>
@@ -24329,10 +24328,10 @@
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-      <species metaid="MAM01000l" sboTerm="SBO:0000247" id="MAM01000l" name="4-hydroxyestrone" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H22O3">
+      <species metaid="M_MAM01000l" sboTerm="SBO:0000247" id="M_MAM01000l" name="4-hydroxyestrone" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H22O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01000l">
+            <rdf:Description rdf:about="#M_MAM01000l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/hmdb/HMDB05895"/>
@@ -24345,10 +24344,10 @@
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-      <species metaid="MAM01000r" sboTerm="SBO:0000247" id="MAM01000r" name="4-hydroxyestrone" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H22O3">
+      <species metaid="M_MAM01000r" sboTerm="SBO:0000247" id="M_MAM01000r" name="4-hydroxyestrone" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H22O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01000r">
+            <rdf:Description rdf:about="#M_MAM01000r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/hmdb/HMDB05895"/>
@@ -24361,10 +24360,10 @@
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-      <species metaid="MAM01001c" sboTerm="SBO:0000247" id="MAM01001c" name="4-hydroxyestrone-2-S-glutathione" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C28H36N3O9S">
+      <species metaid="M_MAM01001c" sboTerm="SBO:0000247" id="M_MAM01001c" name="4-hydroxyestrone-2-S-glutathione" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C28H36N3O9S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01001c">
+            <rdf:Description rdf:about="#M_MAM01001c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM37530"/>
@@ -24376,10 +24375,10 @@
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-      <species metaid="MAM01001m" sboTerm="SBO:0000247" id="MAM01001m" name="4-hydroxyestrone-2-S-glutathione" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C28H36N3O9S">
+      <species metaid="M_MAM01001m" sboTerm="SBO:0000247" id="M_MAM01001m" name="4-hydroxyestrone-2-S-glutathione" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C28H36N3O9S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01001m">
+            <rdf:Description rdf:about="#M_MAM01001m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM37530"/>
@@ -24391,10 +24390,10 @@
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         </annotation>
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-      <species metaid="MAM01001x" sboTerm="SBO:0000247" id="MAM01001x" name="4-hydroxyestrone-2-S-glutathione" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C28H36N3O9S">
+      <species metaid="M_MAM01001x" sboTerm="SBO:0000247" id="M_MAM01001x" name="4-hydroxyestrone-2-S-glutathione" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C28H36N3O9S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01001x">
+            <rdf:Description rdf:about="#M_MAM01001x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM37530"/>
@@ -24406,10 +24405,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01001r" sboTerm="SBO:0000247" id="MAM01001r" name="4-hydroxyestrone-2-S-glutathione" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C28H36N3O9S">
+      <species metaid="M_MAM01001r" sboTerm="SBO:0000247" id="M_MAM01001r" name="4-hydroxyestrone-2-S-glutathione" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C28H36N3O9S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01001r">
+            <rdf:Description rdf:about="#M_MAM01001r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM37530"/>
@@ -24421,10 +24420,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01002c" sboTerm="SBO:0000247" id="MAM01002c" name="4-hydroxyphenylacetaldehyde" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H8O2">
+      <species metaid="M_MAM01002c" sboTerm="SBO:0000247" id="M_MAM01002c" name="4-hydroxyphenylacetaldehyde" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H8O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01002c">
+            <rdf:Description rdf:about="#M_MAM01002c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/4hoxpacd"/>
@@ -24439,10 +24438,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01003c" sboTerm="SBO:0000247" id="MAM01003c" name="4-hydroxyphenylacetate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C8H7O3">
+      <species metaid="M_MAM01003c" sboTerm="SBO:0000247" id="M_MAM01003c" name="4-hydroxyphenylacetate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C8H7O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01003c">
+            <rdf:Description rdf:about="#M_MAM01003c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/4hphac"/>
@@ -24458,10 +24457,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01003e" sboTerm="SBO:0000247" id="MAM01003e" name="4-hydroxyphenylacetate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C8H7O3">
+      <species metaid="M_MAM01003e" sboTerm="SBO:0000247" id="M_MAM01003e" name="4-hydroxyphenylacetate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C8H7O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01003e">
+            <rdf:Description rdf:about="#M_MAM01003e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/4hphac"/>
@@ -24477,10 +24476,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01004c" sboTerm="SBO:0000247" id="MAM01004c" name="4-hydroxyphenyllactate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C9H9O4">
+      <species metaid="M_MAM01004c" sboTerm="SBO:0000247" id="M_MAM01004c" name="4-hydroxyphenyllactate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C9H9O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01004c">
+            <rdf:Description rdf:about="#M_MAM01004c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/34hpl"/>
@@ -24496,10 +24495,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01005c" sboTerm="SBO:0000247" id="MAM01005c" name="4-hydroxyphenylpyruvate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C9H7O4">
+      <species metaid="M_MAM01005c" sboTerm="SBO:0000247" id="M_MAM01005c" name="4-hydroxyphenylpyruvate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C9H7O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01005c">
+            <rdf:Description rdf:about="#M_MAM01005c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/34hpp"/>
@@ -24515,10 +24514,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01005m" sboTerm="SBO:0000247" id="MAM01005m" name="4-hydroxyphenylpyruvate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C9H7O4">
+      <species metaid="M_MAM01005m" sboTerm="SBO:0000247" id="M_MAM01005m" name="4-hydroxyphenylpyruvate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C9H7O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01005m">
+            <rdf:Description rdf:about="#M_MAM01005m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/34hpp"/>
@@ -24534,10 +24533,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01006c" sboTerm="SBO:0000247" id="MAM01006c" name="4-hydroxyretinoic acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H27O3">
+      <species metaid="M_MAM01006c" sboTerm="SBO:0000247" id="M_MAM01006c" name="4-hydroxyretinoic acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H27O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01006c">
+            <rdf:Description rdf:about="#M_MAM01006c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hretn"/>
@@ -24553,10 +24552,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01006e" sboTerm="SBO:0000247" id="MAM01006e" name="4-hydroxyretinoic acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H27O3">
+      <species metaid="M_MAM01006e" sboTerm="SBO:0000247" id="M_MAM01006e" name="4-hydroxyretinoic acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H27O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01006e">
+            <rdf:Description rdf:about="#M_MAM01006e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hretn"/>
@@ -24572,10 +24571,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01007c" sboTerm="SBO:0000247" id="MAM01007c" name="4-hydroxy-tolbutamide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C12H18N2O4S">
+      <species metaid="M_MAM01007c" sboTerm="SBO:0000247" id="M_MAM01007c" name="4-hydroxy-tolbutamide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C12H18N2O4S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01007c">
+            <rdf:Description rdf:about="#M_MAM01007c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/4mtolbutamide"/>
@@ -24590,10 +24589,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01007e" sboTerm="SBO:0000247" id="MAM01007e" name="4-hydroxy-tolbutamide" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C12H18N2O4S">
+      <species metaid="M_MAM01007e" sboTerm="SBO:0000247" id="M_MAM01007e" name="4-hydroxy-tolbutamide" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C12H18N2O4S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01007e">
+            <rdf:Description rdf:about="#M_MAM01007e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/4mtolbutamide"/>
@@ -24608,10 +24607,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01008c" sboTerm="SBO:0000247" id="MAM01008c" name="4-hydroxyvitamin A1" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H30O2">
+      <species metaid="M_MAM01008c" sboTerm="SBO:0000247" id="M_MAM01008c" name="4-hydroxyvitamin A1" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H30O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01008c">
+            <rdf:Description rdf:about="#M_MAM01008c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM164305"/>
@@ -24623,10 +24622,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01008r" sboTerm="SBO:0000247" id="MAM01008r" name="4-hydroxyvitamin A1" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H30O2">
+      <species metaid="M_MAM01008r" sboTerm="SBO:0000247" id="M_MAM01008r" name="4-hydroxyvitamin A1" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H30O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01008r">
+            <rdf:Description rdf:about="#M_MAM01008r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM164305"/>
@@ -24638,10 +24637,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01010c" sboTerm="SBO:0000247" id="MAM01010c" name="4-maleylacetoacetate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C8H6O6">
+      <species metaid="M_MAM01010c" sboTerm="SBO:0000247" id="M_MAM01010c" name="4-maleylacetoacetate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C8H6O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01010c">
+            <rdf:Description rdf:about="#M_MAM01010c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/4mlacac"/>
@@ -24656,10 +24655,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01011c" sboTerm="SBO:0000247" id="MAM01011c" name="4-methoxy-17beta-estradiol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H26O3">
+      <species metaid="M_MAM01011c" sboTerm="SBO:0000247" id="M_MAM01011c" name="4-methoxy-17beta-estradiol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H26O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01011c">
+            <rdf:Description rdf:about="#M_MAM01011c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM37599"/>
@@ -24671,10 +24670,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01012c" sboTerm="SBO:0000247" id="MAM01012c" name="4-methoxyestrone" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H24O3">
+      <species metaid="M_MAM01012c" sboTerm="SBO:0000247" id="M_MAM01012c" name="4-methoxyestrone" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H24O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01012c">
+            <rdf:Description rdf:about="#M_MAM01012c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM151212"/>
@@ -24686,10 +24685,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01013c" sboTerm="SBO:0000247" id="MAM01013c" name="4-methyl-2-oxopentanoate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H9O3">
+      <species metaid="M_MAM01013c" sboTerm="SBO:0000247" id="M_MAM01013c" name="4-methyl-2-oxopentanoate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H9O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01013c">
+            <rdf:Description rdf:about="#M_MAM01013c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/4mop"/>
@@ -24705,10 +24704,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01013m" sboTerm="SBO:0000247" id="MAM01013m" name="4-methyl-2-oxopentanoate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H9O3">
+      <species metaid="M_MAM01013m" sboTerm="SBO:0000247" id="M_MAM01013m" name="4-methyl-2-oxopentanoate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H9O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01013m">
+            <rdf:Description rdf:about="#M_MAM01013m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/4mop"/>
@@ -24724,10 +24723,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01014c" sboTerm="SBO:0000247" id="MAM01014c" name="4-methylpentan-1-ol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H14O">
+      <species metaid="M_MAM01014c" sboTerm="SBO:0000247" id="M_MAM01014c" name="4-methylpentan-1-ol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H14O">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01014c">
+            <rdf:Description rdf:about="#M_MAM01014c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM37636"/>
@@ -24738,10 +24737,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01015m" sboTerm="SBO:0000247" id="MAM01015m" name="4-methyl-pentanoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C27H42N7O17P3S">
+      <species metaid="M_MAM01015m" sboTerm="SBO:0000247" id="M_MAM01015m" name="4-methyl-pentanoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C27H42N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01015m">
+            <rdf:Description rdf:about="#M_MAM01015m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM149082"/>
@@ -24752,10 +24751,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01016c" sboTerm="SBO:0000247" id="MAM01016c" name="4-methylthio-2-oxobutanoic acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C5H7O3S">
+      <species metaid="M_MAM01016c" sboTerm="SBO:0000247" id="M_MAM01016c" name="4-methylthio-2-oxobutanoic acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C5H7O3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01016c">
+            <rdf:Description rdf:about="#M_MAM01016c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/2kmb"/>
@@ -24770,10 +24769,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01017m" sboTerm="SBO:0000247" id="MAM01017m" name="4-methyl-trans-2-pentenoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C27H40N7O17P3S">
+      <species metaid="M_MAM01017m" sboTerm="SBO:0000247" id="M_MAM01017m" name="4-methyl-trans-2-pentenoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C27H40N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01017m">
+            <rdf:Description rdf:about="#M_MAM01017m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/CE4807"/>
@@ -24783,10 +24782,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01018c" sboTerm="SBO:0000247" id="MAM01018c" name="4-N-(n-acetyl-D-glucosaminyl)-protein" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C13H20N4O8R2">
+      <species metaid="M_MAM01018c" sboTerm="SBO:0000247" id="M_MAM01018c" name="4-N-(n-acetyl-D-glucosaminyl)-protein" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C13H20N4O8R2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01018c">
+            <rdf:Description rdf:about="#M_MAM01018c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C04375"/>
@@ -24798,10 +24797,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01019c" sboTerm="SBO:0000247" id="MAM01019c" name="4-nitrocatechol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H5NO4">
+      <species metaid="M_MAM01019c" sboTerm="SBO:0000247" id="M_MAM01019c" name="4-nitrocatechol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H5NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01019c">
+            <rdf:Description rdf:about="#M_MAM01019c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/24nph"/>
@@ -24817,10 +24816,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01019e" sboTerm="SBO:0000247" id="MAM01019e" name="4-nitrocatechol" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H5NO4">
+      <species metaid="M_MAM01019e" sboTerm="SBO:0000247" id="M_MAM01019e" name="4-nitrocatechol" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H5NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01019e">
+            <rdf:Description rdf:about="#M_MAM01019e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/24nph"/>
@@ -24836,10 +24835,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01020e" sboTerm="SBO:0000247" id="MAM01020e" name="4-nitrophenyl-phosphate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H4NO6P">
+      <species metaid="M_MAM01020e" sboTerm="SBO:0000247" id="M_MAM01020e" name="4-nitrophenyl-phosphate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H4NO6P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01020e">
+            <rdf:Description rdf:about="#M_MAM01020e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:17440"/>
@@ -24853,10 +24852,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01021c" sboTerm="SBO:0000247" id="MAM01021c" name="4-nitrophenyl-sulfate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H4NO6S">
+      <species metaid="M_MAM01021c" sboTerm="SBO:0000247" id="M_MAM01021c" name="4-nitrophenyl-sulfate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H4NO6S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01021c">
+            <rdf:Description rdf:about="#M_MAM01021c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/4nphsf"/>
@@ -24871,10 +24870,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01021e" sboTerm="SBO:0000247" id="MAM01021e" name="4-nitrophenyl-sulfate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H4NO6S">
+      <species metaid="M_MAM01021e" sboTerm="SBO:0000247" id="M_MAM01021e" name="4-nitrophenyl-sulfate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H4NO6S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01021e">
+            <rdf:Description rdf:about="#M_MAM01021e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/4nphsf"/>
@@ -24889,10 +24888,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01022c" sboTerm="SBO:0000247" id="MAM01022c" name="4-OH-13-cis-retinal" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H28O2">
+      <species metaid="M_MAM01022c" sboTerm="SBO:0000247" id="M_MAM01022c" name="4-OH-13-cis-retinal" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H28O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01022c">
+            <rdf:Description rdf:about="#M_MAM01022c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM164316"/>
@@ -24903,10 +24902,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01022r" sboTerm="SBO:0000247" id="MAM01022r" name="4-OH-13-cis-retinal" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H28O2">
+      <species metaid="M_MAM01022r" sboTerm="SBO:0000247" id="M_MAM01022r" name="4-OH-13-cis-retinal" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H28O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01022r">
+            <rdf:Description rdf:about="#M_MAM01022r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM164316"/>
@@ -24917,10 +24916,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01023c" sboTerm="SBO:0000247" id="MAM01023c" name="4-OH-9-cis-retinal" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H28O2">
+      <species metaid="M_MAM01023c" sboTerm="SBO:0000247" id="M_MAM01023c" name="4-OH-9-cis-retinal" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H28O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01023c">
+            <rdf:Description rdf:about="#M_MAM01023c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM164317"/>
@@ -24931,10 +24930,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01024c" sboTerm="SBO:0000247" id="MAM01024c" name="4-OH-retinal" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H28O2">
+      <species metaid="M_MAM01024c" sboTerm="SBO:0000247" id="M_MAM01024c" name="4-OH-retinal" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H28O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01024c">
+            <rdf:Description rdf:about="#M_MAM01024c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM37693"/>
@@ -24946,10 +24945,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01024r" sboTerm="SBO:0000247" id="MAM01024r" name="4-OH-retinal" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H28O2">
+      <species metaid="M_MAM01024r" sboTerm="SBO:0000247" id="M_MAM01024r" name="4-OH-retinal" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H28O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01024r">
+            <rdf:Description rdf:about="#M_MAM01024r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM37693"/>
@@ -24961,10 +24960,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01025c" sboTerm="SBO:0000247" id="MAM01025c" name="4-oxo-1-(3-pyridyl)-1-butanone" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H9NO2">
+      <species metaid="M_MAM01025c" sboTerm="SBO:0000247" id="M_MAM01025c" name="4-oxo-1-(3-pyridyl)-1-butanone" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H9NO2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01025c">
+            <rdf:Description rdf:about="#M_MAM01025c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C19567"/>
@@ -24976,10 +24975,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01026c" sboTerm="SBO:0000247" id="MAM01026c" name="4-oxo-13-cis-retinoate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H27O3">
+      <species metaid="M_MAM01026c" sboTerm="SBO:0000247" id="M_MAM01026c" name="4-oxo-13-cis-retinoate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H27O3">
         <annotation>
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-            <rdf:Description rdf:about="#MAM01026c">
+            <rdf:Description rdf:about="#M_MAM01026c">
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                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/oretn"/>
@@ -24994,10 +24993,10 @@
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+      <species metaid="M_MAM01026r" sboTerm="SBO:0000247" id="M_MAM01026r" name="4-oxo-13-cis-retinoate" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H27O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01026r">
+            <rdf:Description rdf:about="#M_MAM01026r">
               <bqbiol:is>
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                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/oretn"/>
@@ -25012,10 +25011,10 @@
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-      <species metaid="MAM01027c" sboTerm="SBO:0000247" id="MAM01027c" name="4-oxo-2-nonenal" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H14O2">
+      <species metaid="M_MAM01027c" sboTerm="SBO:0000247" id="M_MAM01027c" name="4-oxo-2-nonenal" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H14O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01027c">
+            <rdf:Description rdf:about="#M_MAM01027c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:58972"/>
@@ -25028,10 +25027,10 @@
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-      <species metaid="MAM01028c" sboTerm="SBO:0000247" id="MAM01028c" name="4-oxo-9-cis-retinal" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H26O2">
+      <species metaid="M_MAM01028c" sboTerm="SBO:0000247" id="M_MAM01028c" name="4-oxo-9-cis-retinal" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H26O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01028c">
+            <rdf:Description rdf:about="#M_MAM01028c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/CE5652"/>
@@ -25041,10 +25040,10 @@
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-      <species metaid="MAM01028r" sboTerm="SBO:0000247" id="MAM01028r" name="4-oxo-9-cis-retinal" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H26O2">
+      <species metaid="M_MAM01028r" sboTerm="SBO:0000247" id="M_MAM01028r" name="4-oxo-9-cis-retinal" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H26O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01028r">
+            <rdf:Description rdf:about="#M_MAM01028r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/CE5652"/>
@@ -25054,10 +25053,10 @@
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-      <species metaid="MAM01029c" sboTerm="SBO:0000247" id="MAM01029c" name="4-oxo-9-cis-retinoate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H25O3">
+      <species metaid="M_MAM01029c" sboTerm="SBO:0000247" id="M_MAM01029c" name="4-oxo-9-cis-retinoate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H25O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01029c">
+            <rdf:Description rdf:about="#M_MAM01029c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM163202"/>
@@ -25069,10 +25068,10 @@
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         </annotation>
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-      <species metaid="MAM01029r" sboTerm="SBO:0000247" id="MAM01029r" name="4-oxo-9-cis-retinoate" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H25O3">
+      <species metaid="M_MAM01029r" sboTerm="SBO:0000247" id="M_MAM01029r" name="4-oxo-9-cis-retinoate" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H25O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01029r">
+            <rdf:Description rdf:about="#M_MAM01029r">
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                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM163202"/>
@@ -25084,10 +25083,10 @@
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         </annotation>
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-      <species metaid="MAM01030c" sboTerm="SBO:0000247" id="MAM01030c" name="4-oxo-9-cis-retinoyl-beta-glucuronide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C26H33O9">
+      <species metaid="M_MAM01030c" sboTerm="SBO:0000247" id="M_MAM01030c" name="4-oxo-9-cis-retinoyl-beta-glucuronide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C26H33O9">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01030c">
+            <rdf:Description rdf:about="#M_MAM01030c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM151235"/>
@@ -25098,10 +25097,10 @@
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-      <species metaid="MAM01030r" sboTerm="SBO:0000247" id="MAM01030r" name="4-oxo-9-cis-retinoyl-beta-glucuronide" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C26H33O9">
+      <species metaid="M_MAM01030r" sboTerm="SBO:0000247" id="M_MAM01030r" name="4-oxo-9-cis-retinoyl-beta-glucuronide" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C26H33O9">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01030r">
+            <rdf:Description rdf:about="#M_MAM01030r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM151235"/>
@@ -25112,10 +25111,10 @@
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         </annotation>
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-      <species metaid="MAM01031c" sboTerm="SBO:0000247" id="MAM01031c" name="4-oxo-all-trans-retinoate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H25O3">
+      <species metaid="M_MAM01031c" sboTerm="SBO:0000247" id="M_MAM01031c" name="4-oxo-all-trans-retinoate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H25O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01031c">
+            <rdf:Description rdf:about="#M_MAM01031c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/CE2954"/>
@@ -25125,10 +25124,10 @@
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         </annotation>
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-      <species metaid="MAM01031r" sboTerm="SBO:0000247" id="MAM01031r" name="4-oxo-all-trans-retinoate" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H25O3">
+      <species metaid="M_MAM01031r" sboTerm="SBO:0000247" id="M_MAM01031r" name="4-oxo-all-trans-retinoate" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H25O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01031r">
+            <rdf:Description rdf:about="#M_MAM01031r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/CE2954"/>
@@ -25138,10 +25137,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM01032c" sboTerm="SBO:0000247" id="MAM01032c" name="4-oxoretinol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H28O2">
+      <species metaid="M_MAM01032c" sboTerm="SBO:0000247" id="M_MAM01032c" name="4-oxoretinol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H28O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01032c">
+            <rdf:Description rdf:about="#M_MAM01032c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C16683"/>
@@ -25153,10 +25152,10 @@
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         </annotation>
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-      <species metaid="MAM01033c" sboTerm="SBO:0000247" id="MAM01033c" name="4-pyridoxate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H9NO4">
+      <species metaid="M_MAM01033c" sboTerm="SBO:0000247" id="M_MAM01033c" name="4-pyridoxate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H9NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01033c">
+            <rdf:Description rdf:about="#M_MAM01033c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/4pyrdx"/>
@@ -25172,10 +25171,10 @@
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         </annotation>
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-      <species metaid="MAM01033e" sboTerm="SBO:0000247" id="MAM01033e" name="4-pyridoxate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H9NO4">
+      <species metaid="M_MAM01033e" sboTerm="SBO:0000247" id="M_MAM01033e" name="4-pyridoxate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H9NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01033e">
+            <rdf:Description rdf:about="#M_MAM01033e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/4pyrdx"/>
@@ -25191,10 +25190,10 @@
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         </annotation>
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-      <species metaid="MAM01034c" sboTerm="SBO:0000247" id="MAM01034c" name="4-trimethylammoniobutanal" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C7H16NO">
+      <species metaid="M_MAM01034c" sboTerm="SBO:0000247" id="M_MAM01034c" name="4-trimethylammoniobutanal" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C7H16NO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01034c">
+            <rdf:Description rdf:about="#M_MAM01034c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/4tmeabut"/>
@@ -25211,10 +25210,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM01035c" sboTerm="SBO:0000247" id="MAM01035c" name="5-(3-pyridyl)-2-hydroxytetrahydrofuran" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H11NO2">
+      <species metaid="M_MAM01035c" sboTerm="SBO:0000247" id="M_MAM01035c" name="5-(3-pyridyl)-2-hydroxytetrahydrofuran" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H11NO2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01035c">
+            <rdf:Description rdf:about="#M_MAM01035c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C19578"/>
@@ -25226,10 +25225,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM01036c" sboTerm="SBO:0000247" id="MAM01036c" name="5-(D-galactosyloxy)-L-lysine-procollagen" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C13H24N3O8R2">
+      <species metaid="M_MAM01036c" sboTerm="SBO:0000247" id="M_MAM01036c" name="5-(D-galactosyloxy)-L-lysine-procollagen" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C13H24N3O8R2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01036c">
+            <rdf:Description rdf:about="#M_MAM01036c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C04487"/>
@@ -25241,10 +25240,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM01037m" sboTerm="SBO:0000247" id="MAM01037m" name="5(S),12(R)-dihydroxy-eicosa-2,8-trans-6,14-cis-tetraenoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H62N7O19P3S">
+      <species metaid="M_MAM01037m" sboTerm="SBO:0000247" id="M_MAM01037m" name="5(S),12(R)-dihydroxy-eicosa-2,8-trans-6,14-cis-tetraenoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H62N7O19P3S">
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+            <rdf:Description rdf:about="#M_MAM01037m">
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@@ -25255,10 +25254,10 @@
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+      <species metaid="M_MAM01037x" sboTerm="SBO:0000247" id="M_MAM01037x" name="5(S),12(R)-dihydroxy-eicosa-2,8-trans-6,14-cis-tetraenoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H62N7O19P3S">
         <annotation>
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+            <rdf:Description rdf:about="#M_MAM01037x">
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@@ -25269,10 +25268,10 @@
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+      <species metaid="M_MAM01038c" sboTerm="SBO:0000247" id="M_MAM01038c" name="5(S),6(S)-epoxy-15(R)-HEPE" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H27O4">
         <annotation>
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-            <rdf:Description rdf:about="#MAM01038c">
+            <rdf:Description rdf:about="#M_MAM01038c">
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                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM162636"/>
@@ -25283,10 +25282,10 @@
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+      <species metaid="M_MAM01038n" sboTerm="SBO:0000247" id="M_MAM01038n" name="5(S),6(S)-epoxy-15(R)-HEPE" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H27O4">
         <annotation>
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-            <rdf:Description rdf:about="#MAM01038n">
+            <rdf:Description rdf:about="#M_MAM01038n">
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                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM162636"/>
@@ -25297,10 +25296,10 @@
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+      <species metaid="M_MAM01038x" sboTerm="SBO:0000247" id="M_MAM01038x" name="5(S),6(S)-epoxy-15(R)-HEPE" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H27O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01038x">
+            <rdf:Description rdf:about="#M_MAM01038x">
               <bqbiol:is>
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                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM162636"/>
@@ -25311,10 +25310,10 @@
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-      <species metaid="MAM01038r" sboTerm="SBO:0000247" id="MAM01038r" name="5(S),6(S)-epoxy-15(R)-HEPE" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H27O4">
+      <species metaid="M_MAM01038r" sboTerm="SBO:0000247" id="M_MAM01038r" name="5(S),6(S)-epoxy-15(R)-HEPE" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H27O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01038r">
+            <rdf:Description rdf:about="#M_MAM01038r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM162636"/>
@@ -25325,10 +25324,10 @@
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+      <species metaid="M_MAM01039c" sboTerm="SBO:0000247" id="M_MAM01039c" name="5(S)-HEPE" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H29O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01039c">
+            <rdf:Description rdf:about="#M_MAM01039c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/LMFA03070010"/>
@@ -25341,10 +25340,10 @@
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+      <species metaid="M_MAM01039x" sboTerm="SBO:0000247" id="M_MAM01039x" name="5(S)-HEPE" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H29O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01039x">
+            <rdf:Description rdf:about="#M_MAM01039x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/LMFA03070010"/>
@@ -25357,10 +25356,10 @@
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+      <species metaid="M_MAM01040c" sboTerm="SBO:0000247" id="M_MAM01040c" name="5(S)-HETE" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01040c">
+            <rdf:Description rdf:about="#M_MAM01040c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:28209"/>
@@ -25376,10 +25375,10 @@
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-      <species metaid="MAM01040m" sboTerm="SBO:0000247" id="MAM01040m" name="5(S)-HETE" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O3">
+      <species metaid="M_MAM01040m" sboTerm="SBO:0000247" id="M_MAM01040m" name="5(S)-HETE" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01040m">
+            <rdf:Description rdf:about="#M_MAM01040m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:28209"/>
@@ -25395,10 +25394,10 @@
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+      <species metaid="M_MAM01040r" sboTerm="SBO:0000247" id="M_MAM01040r" name="5(S)-HETE" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01040r">
+            <rdf:Description rdf:about="#M_MAM01040r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:28209"/>
@@ -25414,10 +25413,10 @@
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-      <species metaid="MAM01041c" sboTerm="SBO:0000247" id="MAM01041c" name="5(S)-HpEPE" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H29O4">
+      <species metaid="M_MAM01041c" sboTerm="SBO:0000247" id="M_MAM01041c" name="5(S)-HpEPE" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H29O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01041c">
+            <rdf:Description rdf:about="#M_MAM01041c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/LMFA03070001"/>
@@ -25429,10 +25428,10 @@
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         </annotation>
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-      <species metaid="MAM01041n" sboTerm="SBO:0000247" id="MAM01041n" name="5(S)-HpEPE" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H29O4">
+      <species metaid="M_MAM01041n" sboTerm="SBO:0000247" id="M_MAM01041n" name="5(S)-HpEPE" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H29O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01041n">
+            <rdf:Description rdf:about="#M_MAM01041n">
               <bqbiol:is>
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                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/LMFA03070001"/>
@@ -25444,10 +25443,10 @@
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-      <species metaid="MAM01042c" sboTerm="SBO:0000247" id="MAM01042c" name="5(S)-HPETE" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O4">
+      <species metaid="M_MAM01042c" sboTerm="SBO:0000247" id="M_MAM01042c" name="5(S)-HPETE" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01042c">
+            <rdf:Description rdf:about="#M_MAM01042c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/5HPET"/>
@@ -25463,10 +25462,10 @@
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-      <species metaid="MAM01042m" sboTerm="SBO:0000247" id="MAM01042m" name="5(S)-HPETE" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O4">
+      <species metaid="M_MAM01042m" sboTerm="SBO:0000247" id="M_MAM01042m" name="5(S)-HPETE" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01042m">
+            <rdf:Description rdf:about="#M_MAM01042m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/5HPET"/>
@@ -25482,10 +25481,10 @@
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-      <species metaid="MAM01043c" sboTerm="SBO:0000247" id="MAM01043c" name="5-(S-L-cysteinyl)-dopaquinone" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C12H14N2O6S">
+      <species metaid="M_MAM01043c" sboTerm="SBO:0000247" id="M_MAM01043c" name="5-(S-L-cysteinyl)-dopaquinone" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C12H14N2O6S">
         <annotation>
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-            <rdf:Description rdf:about="#MAM01043c">
+            <rdf:Description rdf:about="#M_MAM01043c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/CE1262"/>
@@ -25495,10 +25494,10 @@
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-      <species metaid="MAM01044c" sboTerm="SBO:0000247" id="MAM01044c" name="5,10-methenyl-THF" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H20N7O6">
+      <species metaid="M_MAM01044c" sboTerm="SBO:0000247" id="M_MAM01044c" name="5,10-methenyl-THF" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H20N7O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01044c">
+            <rdf:Description rdf:about="#M_MAM01044c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/methf"/>
@@ -25513,10 +25512,10 @@
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-      <species metaid="MAM01044m" sboTerm="SBO:0000247" id="MAM01044m" name="5,10-methenyl-THF" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H20N7O6">
+      <species metaid="M_MAM01044m" sboTerm="SBO:0000247" id="M_MAM01044m" name="5,10-methenyl-THF" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H20N7O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01044m">
+            <rdf:Description rdf:about="#M_MAM01044m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/methf"/>
@@ -25531,10 +25530,10 @@
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-      <species metaid="MAM01045c" sboTerm="SBO:0000247" id="MAM01045c" name="5,10-methylene-THF" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C20H21N7O6">
+      <species metaid="M_MAM01045c" sboTerm="SBO:0000247" id="M_MAM01045c" name="5,10-methylene-THF" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C20H21N7O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01045c">
+            <rdf:Description rdf:about="#M_MAM01045c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/mlthf"/>
@@ -25549,10 +25548,10 @@
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-      <species metaid="MAM01045m" sboTerm="SBO:0000247" id="MAM01045m" name="5,10-methylene-THF" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C20H21N7O6">
+      <species metaid="M_MAM01045m" sboTerm="SBO:0000247" id="M_MAM01045m" name="5,10-methylene-THF" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C20H21N7O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01045m">
+            <rdf:Description rdf:about="#M_MAM01045m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/mlthf"/>
@@ -25567,10 +25566,10 @@
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-      <species metaid="MAM01046c" sboTerm="SBO:0000247" id="MAM01046c" name="5,12,18R-TriHEPE" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H29O5">
+      <species metaid="M_MAM01046c" sboTerm="SBO:0000247" id="M_MAM01046c" name="5,12,18R-TriHEPE" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H29O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01046c">
+            <rdf:Description rdf:about="#M_MAM01046c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM166517"/>
@@ -25581,10 +25580,10 @@
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-      <species metaid="MAM01047c" sboTerm="SBO:0000247" id="MAM01047c" name="5,12,20-TriHETE" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O5">
+      <species metaid="M_MAM01047c" sboTerm="SBO:0000247" id="M_MAM01047c" name="5,12,20-TriHETE" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01047c">
+            <rdf:Description rdf:about="#M_MAM01047c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM164328"/>
@@ -25596,10 +25595,10 @@
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         </annotation>
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-      <species metaid="MAM01048c" sboTerm="SBO:0000247" id="MAM01048c" name="5,12-DiHETE" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O4">
+      <species metaid="M_MAM01048c" sboTerm="SBO:0000247" id="M_MAM01048c" name="5,12-DiHETE" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01048c">
+            <rdf:Description rdf:about="#M_MAM01048c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/LMFA03060052"/>
@@ -25612,10 +25611,10 @@
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-      <species metaid="MAM01049c" sboTerm="SBO:0000247" id="MAM01049c" name="5,12-dihydroxy-(6E)-LTB5" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H29O4">
+      <species metaid="M_MAM01049c" sboTerm="SBO:0000247" id="M_MAM01049c" name="5,12-dihydroxy-(6E)-LTB5" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H29O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01049c">
+            <rdf:Description rdf:about="#M_MAM01049c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM166518"/>
@@ -25626,10 +25625,10 @@
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       </species>
-      <species metaid="MAM01050c" sboTerm="SBO:0000247" id="MAM01050c" name="5,15-DiHETE" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O4">
+      <species metaid="M_MAM01050c" sboTerm="SBO:0000247" id="M_MAM01050c" name="5,15-DiHETE" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01050c">
+            <rdf:Description rdf:about="#M_MAM01050c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/LMFA03060010"/>
@@ -25642,10 +25641,10 @@
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         </annotation>
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-      <species metaid="MAM01051c" sboTerm="SBO:0000247" id="MAM01051c" name="5,6-DHET" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H33O4">
+      <species metaid="M_MAM01051c" sboTerm="SBO:0000247" id="M_MAM01051c" name="5,6-DHET" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H33O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01051c">
+            <rdf:Description rdf:about="#M_MAM01051c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/LMFA03050004"/>
@@ -25657,10 +25656,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM01052c" sboTerm="SBO:0000247" id="MAM01052c" name="5,6-Dihydrouracil" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H6N2O2">
+      <species metaid="M_MAM01052c" sboTerm="SBO:0000247" id="M_MAM01052c" name="5,6-Dihydrouracil" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H6N2O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01052c">
+            <rdf:Description rdf:about="#M_MAM01052c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/56dura"/>
@@ -25677,10 +25676,10 @@
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         </annotation>
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-      <species metaid="MAM01053c" sboTerm="SBO:0000247" id="MAM01053c" name="5,6-dihydroxyindole-2-carboxylate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C9H6NO4">
+      <species metaid="M_MAM01053c" sboTerm="SBO:0000247" id="M_MAM01053c" name="5,6-dihydroxyindole-2-carboxylate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C9H6NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01053c">
+            <rdf:Description rdf:about="#M_MAM01053c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/56dihindlcrbxlt"/>
@@ -25697,10 +25696,10 @@
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         </annotation>
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-      <species metaid="MAM01054c" sboTerm="SBO:0000247" id="MAM01054c" name="5,6-EET" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O3">
+      <species metaid="M_MAM01054c" sboTerm="SBO:0000247" id="M_MAM01054c" name="5,6-EET" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01054c">
+            <rdf:Description rdf:about="#M_MAM01054c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:34450"/>
@@ -25716,10 +25715,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM01054r" sboTerm="SBO:0000247" id="MAM01054r" name="5,6-EET" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O3">
+      <species metaid="M_MAM01054r" sboTerm="SBO:0000247" id="M_MAM01054r" name="5,6-EET" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01054r">
+            <rdf:Description rdf:about="#M_MAM01054r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:34450"/>
@@ -25735,10 +25734,10 @@
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         </annotation>
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-      <species metaid="MAM01055c" sboTerm="SBO:0000247" id="MAM01055c" name="5,6-epoxy-(8Z)-tetradecenoic acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C14H23O3">
+      <species metaid="M_MAM01055c" sboTerm="SBO:0000247" id="M_MAM01055c" name="5,6-epoxy-(8Z)-tetradecenoic acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C14H23O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01055c">
+            <rdf:Description rdf:about="#M_MAM01055c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/CE2727"/>
@@ -25748,10 +25747,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01056c" sboTerm="SBO:0000247" id="MAM01056c" name="5,6-epoxy,(18R)-HEPE" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H27O4">
+      <species metaid="M_MAM01056c" sboTerm="SBO:0000247" id="M_MAM01056c" name="5,6-epoxy,(18R)-HEPE" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H27O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01056c">
+            <rdf:Description rdf:about="#M_MAM01056c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM163684"/>
@@ -25762,10 +25761,10 @@
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         </annotation>
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-      <species metaid="MAM01057c" sboTerm="SBO:0000247" id="MAM01057c" name="5,6-epoxy-13-cis-retinoate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H27O3">
+      <species metaid="M_MAM01057c" sboTerm="SBO:0000247" id="M_MAM01057c" name="5,6-epoxy-13-cis-retinoate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H27O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01057c">
+            <rdf:Description rdf:about="#M_MAM01057c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM164331"/>
@@ -25777,10 +25776,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM01057r" sboTerm="SBO:0000247" id="MAM01057r" name="5,6-epoxy-13-cis-retinoate" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H27O3">
+      <species metaid="M_MAM01057r" sboTerm="SBO:0000247" id="M_MAM01057r" name="5,6-epoxy-13-cis-retinoate" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H27O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01057r">
+            <rdf:Description rdf:about="#M_MAM01057r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM164331"/>
@@ -25792,10 +25791,10 @@
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         </annotation>
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-      <species metaid="MAM01058c" sboTerm="SBO:0000247" id="MAM01058c" name="5,6-epoxytetraene" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H29O4">
+      <species metaid="M_MAM01058c" sboTerm="SBO:0000247" id="M_MAM01058c" name="5,6-epoxytetraene" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H29O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01058c">
+            <rdf:Description rdf:about="#M_MAM01058c">
               <bqbiol:is>
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                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/LMFA03060075"/>
@@ -25808,10 +25807,10 @@
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-      <species metaid="MAM01058n" sboTerm="SBO:0000247" id="MAM01058n" name="5,6-epoxytetraene" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H29O4">
+      <species metaid="M_MAM01058n" sboTerm="SBO:0000247" id="M_MAM01058n" name="5,6-epoxytetraene" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H29O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01058n">
+            <rdf:Description rdf:about="#M_MAM01058n">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/LMFA03060075"/>
@@ -25824,10 +25823,10 @@
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-      <species metaid="MAM01058x" sboTerm="SBO:0000247" id="MAM01058x" name="5,6-epoxytetraene" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H29O4">
+      <species metaid="M_MAM01058x" sboTerm="SBO:0000247" id="M_MAM01058x" name="5,6-epoxytetraene" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H29O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01058x">
+            <rdf:Description rdf:about="#M_MAM01058x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/LMFA03060075"/>
@@ -25840,10 +25839,10 @@
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-      <species metaid="MAM01058r" sboTerm="SBO:0000247" id="MAM01058r" name="5,6-epoxytetraene" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H29O4">
+      <species metaid="M_MAM01058r" sboTerm="SBO:0000247" id="M_MAM01058r" name="5,6-epoxytetraene" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H29O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01058r">
+            <rdf:Description rdf:about="#M_MAM01058r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/LMFA03060075"/>
@@ -25856,10 +25855,10 @@
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-      <species metaid="MAM01060c" sboTerm="SBO:0000247" id="MAM01060c" name="5,8-epoxy-13-cis-retinoate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H27O3">
+      <species metaid="M_MAM01060c" sboTerm="SBO:0000247" id="M_MAM01060c" name="5,8-epoxy-13-cis-retinoate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H27O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01060c">
+            <rdf:Description rdf:about="#M_MAM01060c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM164331"/>
@@ -25871,10 +25870,10 @@
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         </annotation>
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-      <species metaid="MAM01061c" sboTerm="SBO:0000247" id="MAM01061c" name="5,9,11-trihydroxyprosta-(6E,14Z)-dien-1-oate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H33O5">
+      <species metaid="M_MAM01061c" sboTerm="SBO:0000247" id="M_MAM01061c" name="5,9,11-trihydroxyprosta-(6E,14Z)-dien-1-oate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H33O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01061c">
+            <rdf:Description rdf:about="#M_MAM01061c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM130498"/>
@@ -25885,10 +25884,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM01062c" sboTerm="SBO:0000247" id="MAM01062c" name="5,9-cyclo-6,8,12-trihydroxy-(10E,14Z)-eicosadienoic acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H33O5">
+      <species metaid="M_MAM01062c" sboTerm="SBO:0000247" id="M_MAM01062c" name="5,9-cyclo-6,8,12-trihydroxy-(10E,14Z)-eicosadienoic acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H33O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01062c">
+            <rdf:Description rdf:about="#M_MAM01062c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/CE5931"/>
@@ -25898,10 +25897,10 @@
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         </annotation>
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-      <species metaid="MAM01063c" sboTerm="SBO:0000247" id="MAM01063c" name="5,9-cyclo-6,8-cycloperoxy-12-hydroperoxy-(10E,14Z)-eicosadienoate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O6">
+      <species metaid="M_MAM01063c" sboTerm="SBO:0000247" id="M_MAM01063c" name="5,9-cyclo-6,8-cycloperoxy-12-hydroperoxy-(10E,14Z)-eicosadienoate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01063c">
+            <rdf:Description rdf:about="#M_MAM01063c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/CE5930"/>
@@ -25911,10 +25910,10 @@
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         </annotation>
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-      <species metaid="MAM01064c" sboTerm="SBO:0000247" id="MAM01064c" name="5alpha-androstane-3,17-dione" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H28O2">
+      <species metaid="M_MAM01064c" sboTerm="SBO:0000247" id="M_MAM01064c" name="5alpha-androstane-3,17-dione" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H28O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01064c">
+            <rdf:Description rdf:about="#M_MAM01064c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/andrstandn"/>
@@ -25932,10 +25931,10 @@
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         </annotation>
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-      <species metaid="MAM01064r" sboTerm="SBO:0000247" id="MAM01064r" name="5alpha-androstane-3,17-dione" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H28O2">
+      <species metaid="M_MAM01064r" sboTerm="SBO:0000247" id="M_MAM01064r" name="5alpha-androstane-3,17-dione" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H28O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01064r">
+            <rdf:Description rdf:about="#M_MAM01064r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/andrstandn"/>
@@ -25953,10 +25952,10 @@
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         </annotation>
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-      <species metaid="MAM01065c" sboTerm="SBO:0000247" id="MAM01065c" name="5alpha-androstane-3alpha,17beta-diol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H32O2">
+      <species metaid="M_MAM01065c" sboTerm="SBO:0000247" id="M_MAM01065c" name="5alpha-androstane-3alpha,17beta-diol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H32O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01065c">
+            <rdf:Description rdf:about="#M_MAM01065c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:36713"/>
@@ -25972,10 +25971,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM01069c" sboTerm="SBO:0000247" id="MAM01069c" name="5-alpha-dihydrotestosterone" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H30O2">
+      <species metaid="M_MAM01069c" sboTerm="SBO:0000247" id="M_MAM01069c" name="5-alpha-dihydrotestosterone" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H30O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01069c">
+            <rdf:Description rdf:about="#M_MAM01069c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/5adtststerone"/>
@@ -25994,10 +25993,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01069r" sboTerm="SBO:0000247" id="MAM01069r" name="5-alpha-dihydrotestosterone" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H30O2">
+      <species metaid="M_MAM01069r" sboTerm="SBO:0000247" id="M_MAM01069r" name="5-alpha-dihydrotestosterone" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H30O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01069r">
+            <rdf:Description rdf:about="#M_MAM01069r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/5adtststerone"/>
@@ -26016,10 +26015,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01069e" sboTerm="SBO:0000247" id="MAM01069e" name="5-alpha-dihydrotestosterone" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H30O2">
+      <species metaid="M_MAM01069e" sboTerm="SBO:0000247" id="M_MAM01069e" name="5-alpha-dihydrotestosterone" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H30O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01069e">
+            <rdf:Description rdf:about="#M_MAM01069e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/5adtststerone"/>
@@ -26038,10 +26037,10 @@
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         </annotation>
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-      <species metaid="MAM01070c" sboTerm="SBO:0000247" id="MAM01070c" name="5alpha-dihydrotestosterone-glucuronide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H38O8">
+      <species metaid="M_MAM01070c" sboTerm="SBO:0000247" id="M_MAM01070c" name="5alpha-dihydrotestosterone-glucuronide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H38O8">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01070c">
+            <rdf:Description rdf:about="#M_MAM01070c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/5adtststeroneglc"/>
@@ -26055,10 +26054,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM01070r" sboTerm="SBO:0000247" id="MAM01070r" name="5alpha-dihydrotestosterone-glucuronide" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H38O8">
+      <species metaid="M_MAM01070r" sboTerm="SBO:0000247" id="M_MAM01070r" name="5alpha-dihydrotestosterone-glucuronide" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H38O8">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01070r">
+            <rdf:Description rdf:about="#M_MAM01070r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/5adtststeroneglc"/>
@@ -26072,10 +26071,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01070e" sboTerm="SBO:0000247" id="MAM01070e" name="5alpha-dihydrotestosterone-glucuronide" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H38O8">
+      <species metaid="M_MAM01070e" sboTerm="SBO:0000247" id="M_MAM01070e" name="5alpha-dihydrotestosterone-glucuronide" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H38O8">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01070e">
+            <rdf:Description rdf:about="#M_MAM01070e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/5adtststeroneglc"/>
@@ -26089,10 +26088,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01071c" sboTerm="SBO:0000247" id="MAM01071c" name="5alpha-dihydrotestosterone-sulfate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C19H29O5S">
+      <species metaid="M_MAM01071c" sboTerm="SBO:0000247" id="M_MAM01071c" name="5alpha-dihydrotestosterone-sulfate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C19H29O5S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01071c">
+            <rdf:Description rdf:about="#M_MAM01071c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/5adtststerones"/>
@@ -26107,10 +26106,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01071e" sboTerm="SBO:0000247" id="MAM01071e" name="5alpha-dihydrotestosterone-sulfate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C19H29O5S">
+      <species metaid="M_MAM01071e" sboTerm="SBO:0000247" id="M_MAM01071e" name="5alpha-dihydrotestosterone-sulfate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C19H29O5S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01071e">
+            <rdf:Description rdf:about="#M_MAM01071e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/5adtststerones"/>
@@ -26125,10 +26124,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01072c" sboTerm="SBO:0000247" id="MAM01072c" name="5alpha-pregnane-3,20-dione" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H32O2">
+      <species metaid="M_MAM01072c" sboTerm="SBO:0000247" id="M_MAM01072c" name="5alpha-pregnane-3,20-dione" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H32O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01072c">
+            <rdf:Description rdf:about="#M_MAM01072c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:28952"/>
@@ -26145,10 +26144,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01073x" sboTerm="SBO:0000247" id="MAM01073x" name="5-amino-2-oxopentanoic acid" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H9NO3">
+      <species metaid="M_MAM01073x" sboTerm="SBO:0000247" id="M_MAM01073x" name="5-amino-2-oxopentanoic acid" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H9NO3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01073x">
+            <rdf:Description rdf:about="#M_MAM01073x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/5a2opntn"/>
@@ -26165,10 +26164,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01074c" sboTerm="SBO:0000247" id="MAM01074c" name="5-aminolevulinate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H9NO3">
+      <species metaid="M_MAM01074c" sboTerm="SBO:0000247" id="M_MAM01074c" name="5-aminolevulinate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H9NO3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01074c">
+            <rdf:Description rdf:about="#M_MAM01074c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/5aop"/>
@@ -26185,10 +26184,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01074m" sboTerm="SBO:0000247" id="MAM01074m" name="5-aminolevulinate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H9NO3">
+      <species metaid="M_MAM01074m" sboTerm="SBO:0000247" id="M_MAM01074m" name="5-aminolevulinate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H9NO3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01074m">
+            <rdf:Description rdf:about="#M_MAM01074m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/5aop"/>
@@ -26205,10 +26204,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01075c" sboTerm="SBO:0000247" id="MAM01075c" name="5-androstene-3,17-dione" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H26O2">
+      <species metaid="M_MAM01075c" sboTerm="SBO:0000247" id="M_MAM01075c" name="5-androstene-3,17-dione" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H26O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01075c">
+            <rdf:Description rdf:about="#M_MAM01075c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM4390"/>
@@ -26219,10 +26218,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01075r" sboTerm="SBO:0000247" id="MAM01075r" name="5-androstene-3,17-dione" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H26O2">
+      <species metaid="M_MAM01075r" sboTerm="SBO:0000247" id="M_MAM01075r" name="5-androstene-3,17-dione" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H26O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01075r">
+            <rdf:Description rdf:about="#M_MAM01075r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM4390"/>
@@ -26233,10 +26232,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01076m" sboTerm="SBO:0000247" id="MAM01076m" name="5beta-cholestan-3alpha,7alpha,12alpha,24(S),27-pentol" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H48O5">
+      <species metaid="M_MAM01076m" sboTerm="SBO:0000247" id="M_MAM01076m" name="5beta-cholestan-3alpha,7alpha,12alpha,24(S),27-pentol" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H48O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01076m">
+            <rdf:Description rdf:about="#M_MAM01076m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM30750"/>
@@ -26247,10 +26246,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01077c" sboTerm="SBO:0000247" id="MAM01077c" name="5beta-cholestan-3alpha,7alpha,12alpha,24(S)-tetrol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H48O4">
+      <species metaid="M_MAM01077c" sboTerm="SBO:0000247" id="M_MAM01077c" name="5beta-cholestan-3alpha,7alpha,12alpha,24(S)-tetrol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H48O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01077c">
+            <rdf:Description rdf:about="#M_MAM01077c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM30751"/>
@@ -26261,10 +26260,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01077m" sboTerm="SBO:0000247" id="MAM01077m" name="5beta-cholestan-3alpha,7alpha,12alpha,24(S)-tetrol" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H48O4">
+      <species metaid="M_MAM01077m" sboTerm="SBO:0000247" id="M_MAM01077m" name="5beta-cholestan-3alpha,7alpha,12alpha,24(S)-tetrol" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H48O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01077m">
+            <rdf:Description rdf:about="#M_MAM01077m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM30751"/>
@@ -26275,10 +26274,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01078c" sboTerm="SBO:0000247" id="MAM01078c" name="5beta-cholestan-3alpha,7alpha,12alpha-triol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H48O3">
+      <species metaid="M_MAM01078c" sboTerm="SBO:0000247" id="M_MAM01078c" name="5beta-cholestan-3alpha,7alpha,12alpha-triol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H48O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01078c">
+            <rdf:Description rdf:about="#M_MAM01078c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/xoltriol"/>
@@ -26296,10 +26295,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01078m" sboTerm="SBO:0000247" id="MAM01078m" name="5beta-cholestan-3alpha,7alpha,12alpha-triol" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H48O3">
+      <species metaid="M_MAM01078m" sboTerm="SBO:0000247" id="M_MAM01078m" name="5beta-cholestan-3alpha,7alpha,12alpha-triol" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H48O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01078m">
+            <rdf:Description rdf:about="#M_MAM01078m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/xoltriol"/>
@@ -26317,10 +26316,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01078r" sboTerm="SBO:0000247" id="MAM01078r" name="5beta-cholestan-3alpha,7alpha,12alpha-triol" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H48O3">
+      <species metaid="M_MAM01078r" sboTerm="SBO:0000247" id="M_MAM01078r" name="5beta-cholestan-3alpha,7alpha,12alpha-triol" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H48O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01078r">
+            <rdf:Description rdf:about="#M_MAM01078r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/xoltriol"/>
@@ -26338,10 +26337,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01079m" sboTerm="SBO:0000247" id="MAM01079m" name="5beta-cholestan-3alpha,7alpha,24(S),27-tetrol" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H48O4">
+      <species metaid="M_MAM01079m" sboTerm="SBO:0000247" id="M_MAM01079m" name="5beta-cholestan-3alpha,7alpha,24(S),27-tetrol" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H48O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01079m">
+            <rdf:Description rdf:about="#M_MAM01079m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/LMST04030023"/>
@@ -26354,10 +26353,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01080c" sboTerm="SBO:0000247" id="MAM01080c" name="5beta-cholestan-3alpha,7alpha,24(S)-triol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H48O3">
+      <species metaid="M_MAM01080c" sboTerm="SBO:0000247" id="M_MAM01080c" name="5beta-cholestan-3alpha,7alpha,24(S)-triol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H48O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01080c">
+            <rdf:Description rdf:about="#M_MAM01080c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/LMST04030022"/>
@@ -26370,10 +26369,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01080m" sboTerm="SBO:0000247" id="MAM01080m" name="5beta-cholestan-3alpha,7alpha,24(S)-triol" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H48O3">
+      <species metaid="M_MAM01080m" sboTerm="SBO:0000247" id="M_MAM01080m" name="5beta-cholestan-3alpha,7alpha,24(S)-triol" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H48O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01080m">
+            <rdf:Description rdf:about="#M_MAM01080m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/LMST04030022"/>
@@ -26386,10 +26385,10 @@
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       </species>
-      <species metaid="MAM01081c" sboTerm="SBO:0000247" id="MAM01081c" name="5beta-cholestan-7alpha,12alpha,24(S)-triol-3-one" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H46O4">
+      <species metaid="M_MAM01081c" sboTerm="SBO:0000247" id="M_MAM01081c" name="5beta-cholestan-7alpha,12alpha,24(S)-triol-3-one" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H46O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01081c">
+            <rdf:Description rdf:about="#M_MAM01081c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/LMST04030172"/>
@@ -26402,10 +26401,10 @@
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-      <species metaid="MAM01082c" sboTerm="SBO:0000247" id="MAM01082c" name="5beta-cholestan-7alpha,12alpha,27-triol-3-one" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H46O4">
+      <species metaid="M_MAM01082c" sboTerm="SBO:0000247" id="M_MAM01082c" name="5beta-cholestan-7alpha,12alpha,27-triol-3-one" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H46O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01082c">
+            <rdf:Description rdf:about="#M_MAM01082c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM39195"/>
@@ -26416,10 +26415,10 @@
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-      <species metaid="MAM01083c" sboTerm="SBO:0000247" id="MAM01083c" name="5beta-cholestan-7alpha,24(S)-diol-3-one" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H46O3">
+      <species metaid="M_MAM01083c" sboTerm="SBO:0000247" id="M_MAM01083c" name="5beta-cholestan-7alpha,24(S)-diol-3-one" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H46O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01083c">
+            <rdf:Description rdf:about="#M_MAM01083c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/LMST04030169"/>
@@ -26432,10 +26431,10 @@
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-      <species metaid="MAM01084c" sboTerm="SBO:0000247" id="MAM01084c" name="5beta-cholestan-7alpha,27-diol-3-one" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H46O3">
+      <species metaid="M_MAM01084c" sboTerm="SBO:0000247" id="M_MAM01084c" name="5beta-cholestan-7alpha,27-diol-3-one" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H46O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01084c">
+            <rdf:Description rdf:about="#M_MAM01084c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/LMST04030156"/>
@@ -26447,10 +26446,10 @@
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         </annotation>
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-      <species metaid="MAM01085r" sboTerm="SBO:0000247" id="MAM01085r" name="5beta-cholestane-3alpha,7alpha,12alpha,23,25-pentol" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H48O5">
+      <species metaid="M_MAM01085r" sboTerm="SBO:0000247" id="M_MAM01085r" name="5beta-cholestane-3alpha,7alpha,12alpha,23,25-pentol" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H48O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01085r">
+            <rdf:Description rdf:about="#M_MAM01085r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM28106"/>
@@ -26463,10 +26462,10 @@
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         </annotation>
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-      <species metaid="MAM01086r" sboTerm="SBO:0000247" id="MAM01086r" name="5beta-cholestane-3alpha,7alpha,12alpha,24r,25-pentol" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H48O5">
+      <species metaid="M_MAM01086r" sboTerm="SBO:0000247" id="M_MAM01086r" name="5beta-cholestane-3alpha,7alpha,12alpha,24r,25-pentol" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H48O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01086r">
+            <rdf:Description rdf:about="#M_MAM01086r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/hmdb/HMDB00556"/>
@@ -26481,10 +26480,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM01087r" sboTerm="SBO:0000247" id="MAM01087r" name="5beta-cholestane-3alpha,7alpha,12alpha,24s,25-pentol" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H48O5">
+      <species metaid="M_MAM01087r" sboTerm="SBO:0000247" id="M_MAM01087r" name="5beta-cholestane-3alpha,7alpha,12alpha,24s,25-pentol" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H48O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01087r">
+            <rdf:Description rdf:about="#M_MAM01087r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/hmdb/HMDB02208"/>
@@ -26499,10 +26498,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM01088r" sboTerm="SBO:0000247" id="MAM01088r" name="5beta-cholestane-3alpha,7alpha,12alpha,25,27-pentol" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H48O5">
+      <species metaid="M_MAM01088r" sboTerm="SBO:0000247" id="M_MAM01088r" name="5beta-cholestane-3alpha,7alpha,12alpha,25,27-pentol" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H48O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01088r">
+            <rdf:Description rdf:about="#M_MAM01088r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/hmdb/HMDB02180"/>
@@ -26517,10 +26516,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01089r" sboTerm="SBO:0000247" id="MAM01089r" name="5beta-cholestane-3alpha,7alpha,12alpha,25-tetrol" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H48O4">
+      <species metaid="M_MAM01089r" sboTerm="SBO:0000247" id="M_MAM01089r" name="5beta-cholestane-3alpha,7alpha,12alpha,25-tetrol" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H48O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01089r">
+            <rdf:Description rdf:about="#M_MAM01089r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/hmdb/HMDB00655"/>
@@ -26535,10 +26534,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01090c" sboTerm="SBO:0000247" id="MAM01090c" name="5beta-cholestane-3alpha,7alpha,12alpha,26-tetrol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H48O4">
+      <species metaid="M_MAM01090c" sboTerm="SBO:0000247" id="M_MAM01090c" name="5beta-cholestane-3alpha,7alpha,12alpha,26-tetrol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H48O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01090c">
+            <rdf:Description rdf:about="#M_MAM01090c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/xoltetrol"/>
@@ -26555,10 +26554,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01090m" sboTerm="SBO:0000247" id="MAM01090m" name="5beta-cholestane-3alpha,7alpha,12alpha,26-tetrol" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H48O4">
+      <species metaid="M_MAM01090m" sboTerm="SBO:0000247" id="M_MAM01090m" name="5beta-cholestane-3alpha,7alpha,12alpha,26-tetrol" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H48O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01090m">
+            <rdf:Description rdf:about="#M_MAM01090m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/xoltetrol"/>
@@ -26575,10 +26574,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01091c" sboTerm="SBO:0000247" id="MAM01091c" name="5beta-cholestane-3alpha,7alpha,12alpha,27,27-pentaol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H48O5">
+      <species metaid="M_MAM01091c" sboTerm="SBO:0000247" id="M_MAM01091c" name="5beta-cholestane-3alpha,7alpha,12alpha,27,27-pentaol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H48O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01091c">
+            <rdf:Description rdf:about="#M_MAM01091c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM163692"/>
@@ -26589,10 +26588,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01091m" sboTerm="SBO:0000247" id="MAM01091m" name="5beta-cholestane-3alpha,7alpha,12alpha,27,27-pentaol" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H48O5">
+      <species metaid="M_MAM01091m" sboTerm="SBO:0000247" id="M_MAM01091m" name="5beta-cholestane-3alpha,7alpha,12alpha,27,27-pentaol" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H48O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01091m">
+            <rdf:Description rdf:about="#M_MAM01091m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM163692"/>
@@ -26603,10 +26602,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01092c" sboTerm="SBO:0000247" id="MAM01092c" name="5beta-cholestane-3alpha,7alpha,12alpha,27-tetraol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H48O4">
+      <species metaid="M_MAM01092c" sboTerm="SBO:0000247" id="M_MAM01092c" name="5beta-cholestane-3alpha,7alpha,12alpha,27-tetraol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H48O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01092c">
+            <rdf:Description rdf:about="#M_MAM01092c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:17278"/>
@@ -26621,10 +26620,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01092m" sboTerm="SBO:0000247" id="MAM01092m" name="5beta-cholestane-3alpha,7alpha,12alpha,27-tetraol" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H48O4">
+      <species metaid="M_MAM01092m" sboTerm="SBO:0000247" id="M_MAM01092m" name="5beta-cholestane-3alpha,7alpha,12alpha,27-tetraol" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H48O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01092m">
+            <rdf:Description rdf:about="#M_MAM01092m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:17278"/>
@@ -26639,10 +26638,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM01093c" sboTerm="SBO:0000247" id="MAM01093c" name="5beta-cholestane-3alpha,7alpha,26-triol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H48O3">
+      <species metaid="M_MAM01093c" sboTerm="SBO:0000247" id="M_MAM01093c" name="5beta-cholestane-3alpha,7alpha,26-triol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H48O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01093c">
+            <rdf:Description rdf:about="#M_MAM01093c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/xol7ah3"/>
@@ -26661,10 +26660,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01093m" sboTerm="SBO:0000247" id="MAM01093m" name="5beta-cholestane-3alpha,7alpha,26-triol" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H48O3">
+      <species metaid="M_MAM01093m" sboTerm="SBO:0000247" id="M_MAM01093m" name="5beta-cholestane-3alpha,7alpha,26-triol" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H48O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01093m">
+            <rdf:Description rdf:about="#M_MAM01093m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/xol7ah3"/>
@@ -26683,10 +26682,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01094m" sboTerm="SBO:0000247" id="MAM01094m" name="5beta-cholestane-3alpha,7alpha,27-triol" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H48O3">
+      <species metaid="M_MAM01094m" sboTerm="SBO:0000247" id="M_MAM01094m" name="5beta-cholestane-3alpha,7alpha,27-triol" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H48O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01094m">
+            <rdf:Description rdf:about="#M_MAM01094m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/CE0233"/>
@@ -26700,10 +26699,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01095c" sboTerm="SBO:0000247" id="MAM01095c" name="5beta-cholestane-3alpha,7alpha-diol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H48O2">
+      <species metaid="M_MAM01095c" sboTerm="SBO:0000247" id="M_MAM01095c" name="5beta-cholestane-3alpha,7alpha-diol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H48O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01095c">
+            <rdf:Description rdf:about="#M_MAM01095c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/xol7ah2"/>
@@ -26722,10 +26721,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01095m" sboTerm="SBO:0000247" id="MAM01095m" name="5beta-cholestane-3alpha,7alpha-diol" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H48O2">
+      <species metaid="M_MAM01095m" sboTerm="SBO:0000247" id="M_MAM01095m" name="5beta-cholestane-3alpha,7alpha-diol" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H48O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01095m">
+            <rdf:Description rdf:about="#M_MAM01095m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/xol7ah2"/>
@@ -26744,10 +26743,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01096m" sboTerm="SBO:0000247" id="MAM01096m" name="5-carboxy-alpha-chromanol" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C19H27O4">
+      <species metaid="M_MAM01096m" sboTerm="SBO:0000247" id="M_MAM01096m" name="5-carboxy-alpha-chromanol" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C19H27O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01096m">
+            <rdf:Description rdf:about="#M_MAM01096m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM37803"/>
@@ -26758,10 +26757,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01097c" sboTerm="SBO:0000247" id="MAM01097c" name="5-carboxy-gamma-chromanol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H25O4">
+      <species metaid="M_MAM01097c" sboTerm="SBO:0000247" id="M_MAM01097c" name="5-carboxy-gamma-chromanol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H25O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01097c">
+            <rdf:Description rdf:about="#M_MAM01097c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM37804"/>
@@ -26772,10 +26771,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01097m" sboTerm="SBO:0000247" id="MAM01097m" name="5-carboxy-gamma-chromanol" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H25O4">
+      <species metaid="M_MAM01097m" sboTerm="SBO:0000247" id="M_MAM01097m" name="5-carboxy-gamma-chromanol" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H25O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01097m">
+            <rdf:Description rdf:about="#M_MAM01097m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM37804"/>
@@ -26786,10 +26785,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01098c" sboTerm="SBO:0000247" id="MAM01098c" name="5-deoxyadenosine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H13N5O3">
+      <species metaid="M_MAM01098c" sboTerm="SBO:0000247" id="M_MAM01098c" name="5-deoxyadenosine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H13N5O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01098c">
+            <rdf:Description rdf:about="#M_MAM01098c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dad_5"/>
@@ -26802,10 +26801,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01098e" sboTerm="SBO:0000247" id="MAM01098e" name="5-deoxyadenosine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H13N5O3">
+      <species metaid="M_MAM01098e" sboTerm="SBO:0000247" id="M_MAM01098e" name="5-deoxyadenosine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H13N5O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01098e">
+            <rdf:Description rdf:about="#M_MAM01098e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dad_5"/>
@@ -26818,10 +26817,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01100c" sboTerm="SBO:0000247" id="MAM01100c" name="5-formyl-THF" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C20H21N7O7">
+      <species metaid="M_MAM01100c" sboTerm="SBO:0000247" id="M_MAM01100c" name="5-formyl-THF" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C20H21N7O7">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01100c">
+            <rdf:Description rdf:about="#M_MAM01100c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/5fthf"/>
@@ -26837,10 +26836,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01100m" sboTerm="SBO:0000247" id="MAM01100m" name="5-formyl-THF" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C20H21N7O7">
+      <species metaid="M_MAM01100m" sboTerm="SBO:0000247" id="M_MAM01100m" name="5-formyl-THF" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C20H21N7O7">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01100m">
+            <rdf:Description rdf:about="#M_MAM01100m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/5fthf"/>
@@ -26856,10 +26855,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01100e" sboTerm="SBO:0000247" id="MAM01100e" name="5-formyl-THF" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C20H21N7O7">
+      <species metaid="M_MAM01100e" sboTerm="SBO:0000247" id="M_MAM01100e" name="5-formyl-THF" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C20H21N7O7">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01100e">
+            <rdf:Description rdf:about="#M_MAM01100e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/5fthf"/>
@@ -26875,10 +26874,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01101x" sboTerm="SBO:0000247" id="MAM01101x" name="5-guanidino-2-oxopentanoate" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H11N3O3">
+      <species metaid="M_MAM01101x" sboTerm="SBO:0000247" id="M_MAM01101x" name="5-guanidino-2-oxopentanoate" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H11N3O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01101x">
+            <rdf:Description rdf:about="#M_MAM01101x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/5g2oxpt"/>
@@ -26895,10 +26894,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01102c" sboTerm="SBO:0000247" id="MAM01102c" name="5-hydroxyindoleacetaldehyde" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H9NO2">
+      <species metaid="M_MAM01102c" sboTerm="SBO:0000247" id="M_MAM01102c" name="5-hydroxyindoleacetaldehyde" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H9NO2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01102c">
+            <rdf:Description rdf:about="#M_MAM01102c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/5hoxindact"/>
@@ -26915,10 +26914,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01103c" sboTerm="SBO:0000247" id="MAM01103c" name="5-hydroxyindoleacetate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H8NO3">
+      <species metaid="M_MAM01103c" sboTerm="SBO:0000247" id="M_MAM01103c" name="5-hydroxyindoleacetate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H8NO3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01103c">
+            <rdf:Description rdf:about="#M_MAM01103c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/5hoxindoa"/>
@@ -26935,10 +26934,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01104c" sboTerm="SBO:0000247" id="MAM01104c" name="5-hydroxyisourate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H4N4O4">
+      <species metaid="M_MAM01104c" sboTerm="SBO:0000247" id="M_MAM01104c" name="5-hydroxyisourate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H4N4O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01104c">
+            <rdf:Description rdf:about="#M_MAM01104c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:18072"/>
@@ -26952,10 +26951,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01105c" sboTerm="SBO:0000247" id="MAM01105c" name="5-hydroxykynurenamine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C9H13N2O2">
+      <species metaid="M_MAM01105c" sboTerm="SBO:0000247" id="M_MAM01105c" name="5-hydroxykynurenamine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C9H13N2O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01105c">
+            <rdf:Description rdf:about="#M_MAM01105c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/5hxkynam"/>
@@ -26970,10 +26969,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01106c" sboTerm="SBO:0000247" id="MAM01106c" name="5-hydroxykynurenine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H12N2O4">
+      <species metaid="M_MAM01106c" sboTerm="SBO:0000247" id="M_MAM01106c" name="5-hydroxykynurenine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H12N2O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01106c">
+            <rdf:Description rdf:about="#M_MAM01106c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/5hxkyn"/>
@@ -26988,10 +26987,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01107c" sboTerm="SBO:0000247" id="MAM01107c" name="5-hydroxy-L-tryptophan" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C11H12N2O3">
+      <species metaid="M_MAM01107c" sboTerm="SBO:0000247" id="M_MAM01107c" name="5-hydroxy-L-tryptophan" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C11H12N2O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01107c">
+            <rdf:Description rdf:about="#M_MAM01107c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/5htrp"/>
@@ -27008,10 +27007,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01107e" sboTerm="SBO:0000247" id="MAM01107e" name="5-hydroxy-L-tryptophan" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C11H12N2O3">
+      <species metaid="M_MAM01107e" sboTerm="SBO:0000247" id="M_MAM01107e" name="5-hydroxy-L-tryptophan" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C11H12N2O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01107e">
+            <rdf:Description rdf:about="#M_MAM01107e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/5htrp"/>
@@ -27028,10 +27027,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01109c" sboTerm="SBO:0000247" id="MAM01109c" name="5-hydroxy-omeprazole" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C17H19N3O4S">
+      <species metaid="M_MAM01109c" sboTerm="SBO:0000247" id="M_MAM01109c" name="5-hydroxy-omeprazole" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C17H19N3O4S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01109c">
+            <rdf:Description rdf:about="#M_MAM01109c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/5homeprazole"/>
@@ -27043,10 +27042,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01109e" sboTerm="SBO:0000247" id="MAM01109e" name="5-hydroxy-omeprazole" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C17H19N3O4S">
+      <species metaid="M_MAM01109e" sboTerm="SBO:0000247" id="M_MAM01109e" name="5-hydroxy-omeprazole" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C17H19N3O4S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01109e">
+            <rdf:Description rdf:about="#M_MAM01109e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/5homeprazole"/>
@@ -27058,10 +27057,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01110c" sboTerm="SBO:0000247" id="MAM01110c" name="5-hydroxytryptophol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H11NO2">
+      <species metaid="M_MAM01110c" sboTerm="SBO:0000247" id="M_MAM01110c" name="5-hydroxytryptophol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H11NO2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01110c">
+            <rdf:Description rdf:about="#M_MAM01110c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/hmdb/HMDB01855"/>
@@ -27075,10 +27074,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01111e" sboTerm="SBO:0000247" id="MAM01111e" name="5-L-gamma-glutamyl" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H7NO3">
+      <species metaid="M_MAM01111e" sboTerm="SBO:0000247" id="M_MAM01111e" name="5-L-gamma-glutamyl" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H7NO3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01111e">
+            <rdf:Description rdf:about="#M_MAM01111e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M01111"/>
@@ -27088,10 +27087,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01113c" sboTerm="SBO:0000247" id="MAM01113c" name="5-methoxytryptophol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C11H13NO2">
+      <species metaid="M_MAM01113c" sboTerm="SBO:0000247" id="M_MAM01113c" name="5-methoxytryptophol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C11H13NO2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01113c">
+            <rdf:Description rdf:about="#M_MAM01113c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:114833"/>
@@ -27106,10 +27105,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01114c" sboTerm="SBO:0000247" id="MAM01114c" name="5-methyltetrahydropteroyltri-L-glutamate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C30H39N9O12">
+      <species metaid="M_MAM01114c" sboTerm="SBO:0000247" id="M_MAM01114c" name="5-methyltetrahydropteroyltri-L-glutamate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C30H39N9O12">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01114c">
+            <rdf:Description rdf:about="#M_MAM01114c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:17614"/>
@@ -27122,10 +27121,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01115c" sboTerm="SBO:0000247" id="MAM01115c" name="5-methyl-THF" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H24N7O6">
+      <species metaid="M_MAM01115c" sboTerm="SBO:0000247" id="M_MAM01115c" name="5-methyl-THF" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H24N7O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01115c">
+            <rdf:Description rdf:about="#M_MAM01115c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/5mthf"/>
@@ -27141,10 +27140,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01115e" sboTerm="SBO:0000247" id="MAM01115e" name="5-methyl-THF" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H24N7O6">
+      <species metaid="M_MAM01115e" sboTerm="SBO:0000247" id="M_MAM01115e" name="5-methyl-THF" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H24N7O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01115e">
+            <rdf:Description rdf:about="#M_MAM01115e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/5mthf"/>
@@ -27160,10 +27159,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01116c" sboTerm="SBO:0000247" id="MAM01116c" name="5-methylthioadenosine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C11H15N5O3S">
+      <species metaid="M_MAM01116c" sboTerm="SBO:0000247" id="M_MAM01116c" name="5-methylthioadenosine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C11H15N5O3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01116c">
+            <rdf:Description rdf:about="#M_MAM01116c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/5mta"/>
@@ -27180,10 +27179,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01117c" sboTerm="SBO:0000247" id="MAM01117c" name="5-nitro-gamma-tocopherol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C28H47NO4">
+      <species metaid="M_MAM01117c" sboTerm="SBO:0000247" id="M_MAM01117c" name="5-nitro-gamma-tocopherol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C28H47NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01117c">
+            <rdf:Description rdf:about="#M_MAM01117c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM164347"/>
@@ -27194,10 +27193,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01118c" sboTerm="SBO:0000247" id="MAM01118c" name="5-oxo-(6E)-12-epi-LTB4" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H29O4">
+      <species metaid="M_MAM01118c" sboTerm="SBO:0000247" id="M_MAM01118c" name="5-oxo-(6E)-12-epi-LTB4" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H29O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01118c">
+            <rdf:Description rdf:about="#M_MAM01118c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM162807"/>
@@ -27208,10 +27207,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01118m" sboTerm="SBO:0000247" id="MAM01118m" name="5-oxo-(6E)-12-epi-LTB4" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H29O4">
+      <species metaid="M_MAM01118m" sboTerm="SBO:0000247" id="M_MAM01118m" name="5-oxo-(6E)-12-epi-LTB4" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H29O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01118m">
+            <rdf:Description rdf:about="#M_MAM01118m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM162807"/>
@@ -27222,10 +27221,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01118x" sboTerm="SBO:0000247" id="MAM01118x" name="5-oxo-(6E)-12-epi-LTB4" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H29O4">
+      <species metaid="M_MAM01118x" sboTerm="SBO:0000247" id="M_MAM01118x" name="5-oxo-(6E)-12-epi-LTB4" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H29O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01118x">
+            <rdf:Description rdf:about="#M_MAM01118x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM162807"/>
@@ -27236,10 +27235,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01118r" sboTerm="SBO:0000247" id="MAM01118r" name="5-oxo-(6E)-12-epi-LTB4" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H29O4">
+      <species metaid="M_MAM01118r" sboTerm="SBO:0000247" id="M_MAM01118r" name="5-oxo-(6E)-12-epi-LTB4" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H29O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01118r">
+            <rdf:Description rdf:about="#M_MAM01118r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM162807"/>
@@ -27250,10 +27249,10 @@
           </rdf:RDF>
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+      <species metaid="M_MAM01119m" sboTerm="SBO:0000247" id="M_MAM01119m" name="5-oxo-12(R)-hydroxy-eicosa-(2E,8E,10E,14Z)-tetraenoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H60N7O19P3S">
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@@ -27264,10 +27263,10 @@
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+      <species metaid="M_MAM01119x" sboTerm="SBO:0000247" id="M_MAM01119x" name="5-oxo-12(R)-hydroxy-eicosa-(2E,8E,10E,14Z)-tetraenoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H60N7O19P3S">
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@@ -27278,10 +27277,10 @@
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+      <species metaid="M_MAM01120c" sboTerm="SBO:0000247" id="M_MAM01120c" name="5-oxo-12(R)-hydroxy-eicosa-(8E,10E,14Z)-trienoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H62N7O19P3S">
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@@ -27292,10 +27291,10 @@
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+      <species metaid="M_MAM01120m" sboTerm="SBO:0000247" id="M_MAM01120m" name="5-oxo-12(R)-hydroxy-eicosa-(8E,10E,14Z)-trienoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H62N7O19P3S">
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@@ -27306,10 +27305,10 @@
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+      <species metaid="M_MAM01120x" sboTerm="SBO:0000247" id="M_MAM01120x" name="5-oxo-12(R)-hydroxy-eicosa-(8E,10E,14Z)-trienoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H62N7O19P3S">
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+            <rdf:Description rdf:about="#M_MAM01120x">
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@@ -27320,10 +27319,10 @@
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+      <species metaid="M_MAM01120r" sboTerm="SBO:0000247" id="M_MAM01120r" name="5-oxo-12(R)-hydroxy-eicosa-(8E,10E,14Z)-trienoyl-CoA" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H62N7O19P3S">
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@@ -27334,10 +27333,10 @@
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+      <species metaid="M_MAM01121m" sboTerm="SBO:0000247" id="M_MAM01121m" name="5-oxo-12(S)-hydroxy-eicosa-(2E,8E,10E,14Z)-tetraenoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H60N7O19P3S">
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@@ -27348,10 +27347,10 @@
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+      <species metaid="M_MAM01121x" sboTerm="SBO:0000247" id="M_MAM01121x" name="5-oxo-12(S)-hydroxy-eicosa-(2E,8E,10E,14Z)-tetraenoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H60N7O19P3S">
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@@ -27362,10 +27361,10 @@
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+      <species metaid="M_MAM01122c" sboTerm="SBO:0000247" id="M_MAM01122c" name="5-oxo-12(S)-hydroxy-eicosa-(8E,10E,14Z)-trienoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H62N7O19P3S">
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+            <rdf:Description rdf:about="#M_MAM01122c">
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@@ -27376,10 +27375,10 @@
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+      <species metaid="M_MAM01122m" sboTerm="SBO:0000247" id="M_MAM01122m" name="5-oxo-12(S)-hydroxy-eicosa-(8E,10E,14Z)-trienoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H62N7O19P3S">
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@@ -27390,10 +27389,10 @@
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+      <species metaid="M_MAM01122x" sboTerm="SBO:0000247" id="M_MAM01122x" name="5-oxo-12(S)-hydroxy-eicosa-(8E,10E,14Z)-trienoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H62N7O19P3S">
         <annotation>
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@@ -27404,10 +27403,10 @@
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+      <species metaid="M_MAM01122r" sboTerm="SBO:0000247" id="M_MAM01122r" name="5-oxo-12(S)-hydroxy-eicosa-(8E,10E,14Z)-trienoyl-CoA" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H62N7O19P3S">
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@@ -27418,10 +27417,10 @@
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+      <species metaid="M_MAM01123c" sboTerm="SBO:0000247" id="M_MAM01123c" name="5-oxo-12-HETE" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H29O4">
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+            <rdf:Description rdf:about="#M_MAM01123c">
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@@ -27432,10 +27431,10 @@
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+      <species metaid="M_MAM01124c" sboTerm="SBO:0000247" id="M_MAM01124c" name="5-oxo-6-trans-LTB4" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H29O4">
         <annotation>
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+            <rdf:Description rdf:about="#M_MAM01124c">
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@@ -27447,10 +27446,10 @@
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+      <species metaid="M_MAM01124m" sboTerm="SBO:0000247" id="M_MAM01124m" name="5-oxo-6-trans-LTB4" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H29O4">
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@@ -27462,10 +27461,10 @@
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+      <species metaid="M_MAM01124x" sboTerm="SBO:0000247" id="M_MAM01124x" name="5-oxo-6-trans-LTB4" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H29O4">
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@@ -27477,10 +27476,10 @@
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-      <species metaid="MAM01124r" sboTerm="SBO:0000247" id="MAM01124r" name="5-oxo-6-trans-LTB4" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H29O4">
+      <species metaid="M_MAM01124r" sboTerm="SBO:0000247" id="M_MAM01124r" name="5-oxo-6-trans-LTB4" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H29O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01124r">
+            <rdf:Description rdf:about="#M_MAM01124r">
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                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM38280"/>
@@ -27492,10 +27491,10 @@
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-      <species metaid="MAM01125c" sboTerm="SBO:0000247" id="MAM01125c" name="5-oxo-EPE" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H27O3">
+      <species metaid="M_MAM01125c" sboTerm="SBO:0000247" id="M_MAM01125c" name="5-oxo-EPE" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H27O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01125c">
+            <rdf:Description rdf:about="#M_MAM01125c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM164348"/>
@@ -27506,10 +27505,10 @@
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       </species>
-      <species metaid="MAM01125x" sboTerm="SBO:0000247" id="MAM01125x" name="5-oxo-EPE" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H27O3">
+      <species metaid="M_MAM01125x" sboTerm="SBO:0000247" id="M_MAM01125x" name="5-oxo-EPE" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H27O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01125x">
+            <rdf:Description rdf:about="#M_MAM01125x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM164348"/>
@@ -27520,10 +27519,10 @@
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       </species>
-      <species metaid="MAM01126c" sboTerm="SBO:0000247" id="MAM01126c" name="5-oxo-ETE" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H29O3">
+      <species metaid="M_MAM01126c" sboTerm="SBO:0000247" id="M_MAM01126c" name="5-oxo-ETE" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H29O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01126c">
+            <rdf:Description rdf:about="#M_MAM01126c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/LMFA03060011"/>
@@ -27536,10 +27535,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM01127c" sboTerm="SBO:0000247" id="MAM01127c" name="5-oxoproline" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C5H6NO3">
+      <species metaid="M_MAM01127c" sboTerm="SBO:0000247" id="M_MAM01127c" name="5-oxoproline" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C5H6NO3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01127c">
+            <rdf:Description rdf:about="#M_MAM01127c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/5oxpro"/>
@@ -27555,10 +27554,10 @@
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         </annotation>
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-      <species metaid="MAM01128c" sboTerm="SBO:0000247" id="MAM01128c" name="5-oxoprolyl-peptide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H11N3O5R2">
+      <species metaid="M_MAM01128c" sboTerm="SBO:0000247" id="M_MAM01128c" name="5-oxoprolyl-peptide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H11N3O5R2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01128c">
+            <rdf:Description rdf:about="#M_MAM01128c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C02805"/>
@@ -27570,10 +27569,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM01129c" sboTerm="SBO:0000247" id="MAM01129c" name="5-phosphopolynucleotide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C15H22O19P3R3">
+      <species metaid="M_MAM01129c" sboTerm="SBO:0000247" id="M_MAM01129c" name="5-phosphopolynucleotide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C15H22O19P3R3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01129c">
+            <rdf:Description rdf:about="#M_MAM01129c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C03475"/>
@@ -27585,10 +27584,10 @@
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         </annotation>
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-      <species metaid="MAM01130c" sboTerm="SBO:0000247" id="MAM01130c" name="5-phosphoribosyl-4-carboxy-5-aminoimidazole" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C9H11N3O9P">
+      <species metaid="M_MAM01130c" sboTerm="SBO:0000247" id="M_MAM01130c" name="5-phosphoribosyl-4-carboxy-5-aminoimidazole" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C9H11N3O9P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01130c">
+            <rdf:Description rdf:about="#M_MAM01130c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/5aizc"/>
@@ -27603,10 +27602,10 @@
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         </annotation>
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-      <species metaid="MAM01131c" sboTerm="SBO:0000247" id="MAM01131c" name="5-phosphoribosylamine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C5H11NO7P">
+      <species metaid="M_MAM01131c" sboTerm="SBO:0000247" id="M_MAM01131c" name="5-phosphoribosylamine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C5H11NO7P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01131c">
+            <rdf:Description rdf:about="#M_MAM01131c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pram"/>
@@ -27621,10 +27620,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM01132c" sboTerm="SBO:0000247" id="MAM01132c" name="5-phosphoribosylformylglycinamidine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C8H15N3O8P">
+      <species metaid="M_MAM01132c" sboTerm="SBO:0000247" id="M_MAM01132c" name="5-phosphoribosylformylglycinamidine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C8H15N3O8P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01132c">
+            <rdf:Description rdf:about="#M_MAM01132c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/fpram"/>
@@ -27639,10 +27638,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01133c" sboTerm="SBO:0000247" id="MAM01133c" name="5-pp-inspP5" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-13" fbc:chemicalFormula="C6H6O27P7">
+      <species metaid="M_MAM01133c" sboTerm="SBO:0000247" id="M_MAM01133c" name="5-pp-inspP5" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-13" fbc:chemicalFormula="C6H6O27P7">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01133c">
+            <rdf:Description rdf:about="#M_MAM01133c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ppmi12346p"/>
@@ -27656,10 +27655,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM01133n" sboTerm="SBO:0000247" id="MAM01133n" name="5-pp-inspP5" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-13" fbc:chemicalFormula="C6H6O27P7">
+      <species metaid="M_MAM01133n" sboTerm="SBO:0000247" id="M_MAM01133n" name="5-pp-inspP5" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-13" fbc:chemicalFormula="C6H6O27P7">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01133n">
+            <rdf:Description rdf:about="#M_MAM01133n">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ppmi12346p"/>
@@ -27673,10 +27672,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM01134c" sboTerm="SBO:0000247" id="MAM01134c" name="5-S-cysteinyldopa" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C12H16N2O6S">
+      <species metaid="M_MAM01134c" sboTerm="SBO:0000247" id="M_MAM01134c" name="5-S-cysteinyldopa" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C12H16N2O6S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01134c">
+            <rdf:Description rdf:about="#M_MAM01134c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C17935"/>
@@ -27690,10 +27689,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01135c" sboTerm="SBO:0000247" id="MAM01135c" name="5-S-glutathionyl-adrenochrome hydroquinone" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C19H25N4O9S">
+      <species metaid="M_MAM01135c" sboTerm="SBO:0000247" id="M_MAM01135c" name="5-S-glutathionyl-adrenochrome hydroquinone" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C19H25N4O9S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01135c">
+            <rdf:Description rdf:about="#M_MAM01135c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM164349"/>
@@ -27704,10 +27703,10 @@
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         </annotation>
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-      <species metaid="MAM01136c" sboTerm="SBO:0000247" id="MAM01136c" name="5-S-glutathionyl-aminochrome reduced" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H23N4O8S">
+      <species metaid="M_MAM01136c" sboTerm="SBO:0000247" id="M_MAM01136c" name="5-S-glutathionyl-aminochrome reduced" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H23N4O8S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01136c">
+            <rdf:Description rdf:about="#M_MAM01136c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM151428"/>
@@ -27718,10 +27717,10 @@
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         </annotation>
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-      <species metaid="MAM01137c" sboTerm="SBO:0000247" id="MAM01137c" name="5-S-glutathionyl-dopachrome hydroquinone" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C19H22N4O10S">
+      <species metaid="M_MAM01137c" sboTerm="SBO:0000247" id="M_MAM01137c" name="5-S-glutathionyl-dopachrome hydroquinone" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C19H22N4O10S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01137c">
+            <rdf:Description rdf:about="#M_MAM01137c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM164350"/>
@@ -27732,10 +27731,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01138c" sboTerm="SBO:0000247" id="MAM01138c" name="5-S-glutathionyl-dopamine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H26N4O8S">
+      <species metaid="M_MAM01138c" sboTerm="SBO:0000247" id="M_MAM01138c" name="5-S-glutathionyl-dopamine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H26N4O8S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01138c">
+            <rdf:Description rdf:about="#M_MAM01138c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM164351"/>
@@ -27747,10 +27746,10 @@
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+      <species metaid="M_MAM01139c" sboTerm="SBO:0000247" id="M_MAM01139c" name="5-S-glutathionyl-L-dopa" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C19H25N4O10S">
         <annotation>
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-            <rdf:Description rdf:about="#MAM01139c">
+            <rdf:Description rdf:about="#M_MAM01139c">
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                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM164352"/>
@@ -27761,10 +27760,10 @@
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-      <species metaid="MAM01140c" sboTerm="SBO:0000247" id="MAM01140c" name="5-S-glutathionyl-noradrenochrome hydroquinone" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H23N4O9S">
+      <species metaid="M_MAM01140c" sboTerm="SBO:0000247" id="M_MAM01140c" name="5-S-glutathionyl-noradrenochrome hydroquinone" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H23N4O9S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01140c">
+            <rdf:Description rdf:about="#M_MAM01140c">
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                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM164353"/>
@@ -27775,10 +27774,10 @@
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-      <species metaid="MAM01141c" sboTerm="SBO:0000247" id="MAM01141c" name="5-tetradecenoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C35H56N7O17P3S">
+      <species metaid="M_MAM01141c" sboTerm="SBO:0000247" id="M_MAM01141c" name="5-tetradecenoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C35H56N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01141c">
+            <rdf:Description rdf:about="#M_MAM01141c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/tetde5coa"/>
@@ -27792,10 +27791,10 @@
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-      <species metaid="MAM01141m" sboTerm="SBO:0000247" id="MAM01141m" name="5-tetradecenoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C35H56N7O17P3S">
+      <species metaid="M_MAM01141m" sboTerm="SBO:0000247" id="M_MAM01141m" name="5-tetradecenoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C35H56N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01141m">
+            <rdf:Description rdf:about="#M_MAM01141m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/tetde5coa"/>
@@ -27809,10 +27808,10 @@
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-      <species metaid="MAM01141x" sboTerm="SBO:0000247" id="MAM01141x" name="5-tetradecenoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C35H56N7O17P3S">
+      <species metaid="M_MAM01141x" sboTerm="SBO:0000247" id="M_MAM01141x" name="5-tetradecenoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C35H56N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01141x">
+            <rdf:Description rdf:about="#M_MAM01141x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/tetde5coa"/>
@@ -27826,10 +27825,10 @@
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-      <species metaid="MAM01141r" sboTerm="SBO:0000247" id="MAM01141r" name="5-tetradecenoyl-CoA" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C35H56N7O17P3S">
+      <species metaid="M_MAM01141r" sboTerm="SBO:0000247" id="M_MAM01141r" name="5-tetradecenoyl-CoA" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C35H56N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01141r">
+            <rdf:Description rdf:about="#M_MAM01141r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/tetde5coa"/>
@@ -27843,10 +27842,10 @@
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-      <species metaid="MAM01143c" sboTerm="SBO:0000247" id="MAM01143c" name="6-(alpha-D-glucosaminyl)-1-phosphatidyl-1D-myo-inositol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C17H28NO17PR2">
+      <species metaid="M_MAM01143c" sboTerm="SBO:0000247" id="M_MAM01143c" name="6-(alpha-D-glucosaminyl)-1-phosphatidyl-1D-myo-inositol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C17H28NO17PR2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01143c">
+            <rdf:Description rdf:about="#M_MAM01143c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/gpail_hs"/>
@@ -27860,10 +27859,10 @@
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         </annotation>
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-      <species metaid="MAM01143r" sboTerm="SBO:0000247" id="MAM01143r" name="6-(alpha-D-glucosaminyl)-1-phosphatidyl-1D-myo-inositol" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C17H28NO17PR2">
+      <species metaid="M_MAM01143r" sboTerm="SBO:0000247" id="M_MAM01143r" name="6-(alpha-D-glucosaminyl)-1-phosphatidyl-1D-myo-inositol" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C17H28NO17PR2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01143r">
+            <rdf:Description rdf:about="#M_MAM01143r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/gpail_hs"/>
@@ -27877,10 +27876,10 @@
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-      <species metaid="MAM01144m" sboTerm="SBO:0000247" id="MAM01144m" name="6(R)-hydroxy-tetradeca-(2E,4E,8Z)-trienoate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C14H21O3">
+      <species metaid="M_MAM01144m" sboTerm="SBO:0000247" id="M_MAM01144m" name="6(R)-hydroxy-tetradeca-(2E,4E,8Z)-trienoate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C14H21O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01144m">
+            <rdf:Description rdf:about="#M_MAM01144m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/CE5311"/>
@@ -27890,10 +27889,10 @@
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         </annotation>
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-      <species metaid="MAM01145m" sboTerm="SBO:0000247" id="MAM01145m" name="6(R)-hydroxy-tetradeca-(2E,8Z)-dienoate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C14H23O3">
+      <species metaid="M_MAM01145m" sboTerm="SBO:0000247" id="M_MAM01145m" name="6(R)-hydroxy-tetradeca-(2E,8Z)-dienoate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C14H23O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01145m">
+            <rdf:Description rdf:about="#M_MAM01145m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/CE5312"/>
@@ -27903,10 +27902,10 @@
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         </annotation>
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-      <species metaid="MAM01146m" sboTerm="SBO:0000247" id="MAM01146m" name="6(R)-hydroxy-tetradeca-(4E,8Z)-dienoate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C14H23O3">
+      <species metaid="M_MAM01146m" sboTerm="SBO:0000247" id="M_MAM01146m" name="6(R)-hydroxy-tetradeca-(4E,8Z)-dienoate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C14H23O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01146m">
+            <rdf:Description rdf:about="#M_MAM01146m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/CE5313"/>
@@ -27916,10 +27915,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM01147m" sboTerm="SBO:0000247" id="MAM01147m" name="6(S)-hydroxy-tetradeca-(2E,4E,8Z)-trienoate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C14H21O3">
+      <species metaid="M_MAM01147m" sboTerm="SBO:0000247" id="M_MAM01147m" name="6(S)-hydroxy-tetradeca-(2E,4E,8Z)-trienoate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C14H21O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01147m">
+            <rdf:Description rdf:about="#M_MAM01147m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/CE5323"/>
@@ -27929,10 +27928,10 @@
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         </annotation>
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-      <species metaid="MAM01148m" sboTerm="SBO:0000247" id="MAM01148m" name="6(S)-hydroxy-tetradeca-(2E,8Z)-dienoate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C14H23O3">
+      <species metaid="M_MAM01148m" sboTerm="SBO:0000247" id="M_MAM01148m" name="6(S)-hydroxy-tetradeca-(2E,8Z)-dienoate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C14H23O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01148m">
+            <rdf:Description rdf:about="#M_MAM01148m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/CE5324"/>
@@ -27942,10 +27941,10 @@
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-      <species metaid="MAM01149m" sboTerm="SBO:0000247" id="MAM01149m" name="6(S)-hydroxy-tetradeca-(4E,8Z)-dienoate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C14H23O3">
+      <species metaid="M_MAM01149m" sboTerm="SBO:0000247" id="M_MAM01149m" name="6(S)-hydroxy-tetradeca-(4E,8Z)-dienoate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C14H23O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01149m">
+            <rdf:Description rdf:about="#M_MAM01149m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/CE5325"/>
@@ -27955,10 +27954,10 @@
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         </annotation>
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-      <species metaid="MAM01150c" sboTerm="SBO:0000247" id="MAM01150c" name="6,7-dihydro-12-epi-LTB4" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H33O4">
+      <species metaid="M_MAM01150c" sboTerm="SBO:0000247" id="M_MAM01150c" name="6,7-dihydro-12-epi-LTB4" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H33O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01150c">
+            <rdf:Description rdf:about="#M_MAM01150c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM38446"/>
@@ -27969,10 +27968,10 @@
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         </annotation>
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-      <species metaid="MAM01150m" sboTerm="SBO:0000247" id="MAM01150m" name="6,7-dihydro-12-epi-LTB4" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H33O4">
+      <species metaid="M_MAM01150m" sboTerm="SBO:0000247" id="M_MAM01150m" name="6,7-dihydro-12-epi-LTB4" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H33O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01150m">
+            <rdf:Description rdf:about="#M_MAM01150m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM38446"/>
@@ -27983,10 +27982,10 @@
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         </annotation>
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-      <species metaid="MAM01150x" sboTerm="SBO:0000247" id="MAM01150x" name="6,7-dihydro-12-epi-LTB4" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H33O4">
+      <species metaid="M_MAM01150x" sboTerm="SBO:0000247" id="M_MAM01150x" name="6,7-dihydro-12-epi-LTB4" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H33O4">
         <annotation>
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@@ -27997,10 +27996,10 @@
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+      <species metaid="M_MAM01151c" sboTerm="SBO:0000247" id="M_MAM01151c" name="6,7-dihydro-5-oxo-12-epi-LTB4" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O4">
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@@ -28012,10 +28011,10 @@
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+      <species metaid="M_MAM01151m" sboTerm="SBO:0000247" id="M_MAM01151m" name="6,7-dihydro-5-oxo-12-epi-LTB4" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O4">
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@@ -28027,10 +28026,10 @@
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+      <species metaid="M_MAM01151x" sboTerm="SBO:0000247" id="M_MAM01151x" name="6,7-dihydro-5-oxo-12-epi-LTB4" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O4">
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@@ -28042,10 +28041,10 @@
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+      <species metaid="M_MAM01151r" sboTerm="SBO:0000247" id="M_MAM01151r" name="6,7-dihydro-5-oxo-12-epi-LTB4" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O4">
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@@ -28057,10 +28056,10 @@
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+      <species metaid="M_MAM01152c" sboTerm="SBO:0000247" id="M_MAM01152c" name="6,7-dihydro-5-oxo-LTB4" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O4">
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+            <rdf:Description rdf:about="#M_MAM01152c">
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@@ -28071,10 +28070,10 @@
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+      <species metaid="M_MAM01152m" sboTerm="SBO:0000247" id="M_MAM01152m" name="6,7-dihydro-5-oxo-LTB4" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O4">
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@@ -28085,10 +28084,10 @@
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+      <species metaid="M_MAM01152x" sboTerm="SBO:0000247" id="M_MAM01152x" name="6,7-dihydro-5-oxo-LTB4" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O4">
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@@ -28099,10 +28098,10 @@
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+      <species metaid="M_MAM01152r" sboTerm="SBO:0000247" id="M_MAM01152r" name="6,7-dihydro-5-oxo-LTB4" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O4">
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@@ -28113,10 +28112,10 @@
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+      <species metaid="M_MAM01153c" sboTerm="SBO:0000247" id="M_MAM01153c" name="6,7-dihydro-LTB4" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H33O4">
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@@ -28127,10 +28126,10 @@
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+      <species metaid="M_MAM01153m" sboTerm="SBO:0000247" id="M_MAM01153m" name="6,7-dihydro-LTB4" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H33O4">
         <annotation>
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@@ -28141,10 +28140,10 @@
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+      <species metaid="M_MAM01153x" sboTerm="SBO:0000247" id="M_MAM01153x" name="6,7-dihydro-LTB4" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H33O4">
         <annotation>
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@@ -28155,10 +28154,10 @@
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+      <species metaid="M_MAM01153r" sboTerm="SBO:0000247" id="M_MAM01153r" name="6,7-dihydro-LTB4" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H33O4">
         <annotation>
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@@ -28169,10 +28168,10 @@
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+      <species metaid="M_MAM01154c" sboTerm="SBO:0000247" id="M_MAM01154c" name="6,7-dihydroxy-1,2,3,4-tetrahydroisoquinoline" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C9H12NO2">
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+            <rdf:Description rdf:about="#M_MAM01154c">
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@@ -28186,10 +28185,10 @@
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+      <species metaid="M_MAM01155c" sboTerm="SBO:0000247" id="M_MAM01155c" name="6-[(1S,2R)-1,2-dihydroxy-3-triphosphooxypropyl]-7,8-dihydropterin" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C9H12N5O13P3">
         <annotation>
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+            <rdf:Description rdf:about="#M_MAM01155c">
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@@ -28204,10 +28203,10 @@
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+      <species metaid="M_MAM01155n" sboTerm="SBO:0000247" id="M_MAM01155n" name="6-[(1S,2R)-1,2-dihydroxy-3-triphosphooxypropyl]-7,8-dihydropterin" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C9H12N5O13P3">
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+            <rdf:Description rdf:about="#M_MAM01155n">
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@@ -28222,10 +28221,10 @@
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+      <species metaid="M_MAM01156c" sboTerm="SBO:0000247" id="M_MAM01156c" name="6-[2,3-dihydroxy-1-(hydroxymethyl)propyl]-1,2-dihydro-7-hydroxy-9-methoxy-cyclopenta[c][1]benzopyran-3,4-dione" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C17H18O8">
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-            <rdf:Description rdf:about="#MAM01156c">
+            <rdf:Description rdf:about="#M_MAM01156c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C19590"/>
@@ -28237,10 +28236,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM01157x" sboTerm="SBO:0000247" id="MAM01157x" name="6-amino-2-oxohexanoate" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H11NO3">
+      <species metaid="M_MAM01157x" sboTerm="SBO:0000247" id="M_MAM01157x" name="6-amino-2-oxohexanoate" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H11NO3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01157x">
+            <rdf:Description rdf:about="#M_MAM01157x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/6a2ohxnt"/>
@@ -28256,10 +28255,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01158c" sboTerm="SBO:0000247" id="MAM01158c" name="6beta-hydroxytestosterone" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H28O3">
+      <species metaid="M_MAM01158c" sboTerm="SBO:0000247" id="M_MAM01158c" name="6beta-hydroxytestosterone" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H28O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01158c">
+            <rdf:Description rdf:about="#M_MAM01158c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/6htststerone"/>
@@ -28275,10 +28274,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM01158r" sboTerm="SBO:0000247" id="MAM01158r" name="6beta-hydroxytestosterone" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H28O3">
+      <species metaid="M_MAM01158r" sboTerm="SBO:0000247" id="M_MAM01158r" name="6beta-hydroxytestosterone" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H28O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01158r">
+            <rdf:Description rdf:about="#M_MAM01158r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/6htststerone"/>
@@ -28294,10 +28293,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM01158e" sboTerm="SBO:0000247" id="MAM01158e" name="6beta-hydroxytestosterone" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H28O3">
+      <species metaid="M_MAM01158e" sboTerm="SBO:0000247" id="M_MAM01158e" name="6beta-hydroxytestosterone" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H28O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01158e">
+            <rdf:Description rdf:about="#M_MAM01158e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/6htststerone"/>
@@ -28313,10 +28312,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM01159c" sboTerm="SBO:0000247" id="MAM01159c" name="6-deoxy-L-galactose" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H12O5">
+      <species metaid="M_MAM01159c" sboTerm="SBO:0000247" id="M_MAM01159c" name="6-deoxy-L-galactose" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H12O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01159c">
+            <rdf:Description rdf:about="#M_MAM01159c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/fuc__L"/>
@@ -28333,10 +28332,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM01159l" sboTerm="SBO:0000247" id="MAM01159l" name="6-deoxy-L-galactose" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H12O5">
+      <species metaid="M_MAM01159l" sboTerm="SBO:0000247" id="M_MAM01159l" name="6-deoxy-L-galactose" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H12O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01159l">
+            <rdf:Description rdf:about="#M_MAM01159l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/fuc__L"/>
@@ -28353,10 +28352,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01159e" sboTerm="SBO:0000247" id="MAM01159e" name="6-deoxy-L-galactose" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H12O5">
+      <species metaid="M_MAM01159e" sboTerm="SBO:0000247" id="M_MAM01159e" name="6-deoxy-L-galactose" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H12O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01159e">
+            <rdf:Description rdf:about="#M_MAM01159e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/fuc__L"/>
@@ -28373,10 +28372,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01160c" sboTerm="SBO:0000247" id="MAM01160c" name="6-hydroxy-1,2,3,4-tetrahydro-beta-carboline" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C11H13N2O">
+      <species metaid="M_MAM01160c" sboTerm="SBO:0000247" id="M_MAM01160c" name="6-hydroxy-1,2,3,4-tetrahydro-beta-carboline" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C11H13N2O">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01160c">
+            <rdf:Description rdf:about="#M_MAM01160c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM166635"/>
@@ -28388,10 +28387,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01161c" sboTerm="SBO:0000247" id="MAM01161c" name="6-hydroxymelatonin" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C13H16N2O3">
+      <species metaid="M_MAM01161c" sboTerm="SBO:0000247" id="M_MAM01161c" name="6-hydroxymelatonin" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C13H16N2O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01161c">
+            <rdf:Description rdf:about="#M_MAM01161c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/6hoxmelatn"/>
@@ -28408,10 +28407,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01162c" sboTerm="SBO:0000247" id="MAM01162c" name="6-hydroxymelatonin-sulfate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C13H15N2O6S">
+      <species metaid="M_MAM01162c" sboTerm="SBO:0000247" id="M_MAM01162c" name="6-hydroxymelatonin-sulfate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C13H15N2O6S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01162c">
+            <rdf:Description rdf:about="#M_MAM01162c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM15003"/>
@@ -28423,10 +28422,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01163c" sboTerm="SBO:0000247" id="MAM01163c" name="6-hydroxypaclitaxel" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C47H31NO15">
+      <species metaid="M_MAM01163c" sboTerm="SBO:0000247" id="M_MAM01163c" name="6-hydroxypaclitaxel" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C47H31NO15">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01163c">
+            <rdf:Description rdf:about="#M_MAM01163c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/htaxol"/>
@@ -28439,10 +28438,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01163e" sboTerm="SBO:0000247" id="MAM01163e" name="6-hydroxypaclitaxel" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C47H31NO15">
+      <species metaid="M_MAM01163e" sboTerm="SBO:0000247" id="M_MAM01163e" name="6-hydroxypaclitaxel" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C47H31NO15">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01163e">
+            <rdf:Description rdf:about="#M_MAM01163e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/htaxol"/>
@@ -28455,10 +28454,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01164c" sboTerm="SBO:0000247" id="MAM01164c" name="6-lactoyl-5,6,7,8-tetrahydropterin" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H13N5O3">
+      <species metaid="M_MAM01164c" sboTerm="SBO:0000247" id="M_MAM01164c" name="6-lactoyl-5,6,7,8-tetrahydropterin" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H13N5O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01164c">
+            <rdf:Description rdf:about="#M_MAM01164c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:17248"/>
@@ -28472,10 +28471,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01165m" sboTerm="SBO:0000247" id="MAM01165m" name="6-methoxy-3-methyl-2-all-trans-decaprenyl-1,4-benzoquinol" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C58H90O3">
+      <species metaid="M_MAM01165m" sboTerm="SBO:0000247" id="M_MAM01165m" name="6-methoxy-3-methyl-2-all-trans-decaprenyl-1,4-benzoquinol" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C58H90O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01165m">
+            <rdf:Description rdf:about="#M_MAM01165m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM9808"/>
@@ -28486,10 +28485,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01167c" sboTerm="SBO:0000247" id="MAM01167c" name="6-oxo-prostaglandin E1" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O6">
+      <species metaid="M_MAM01167c" sboTerm="SBO:0000247" id="M_MAM01167c" name="6-oxo-prostaglandin E1" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01167c">
+            <rdf:Description rdf:about="#M_MAM01167c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:28269"/>
@@ -28504,10 +28503,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01168c" sboTerm="SBO:0000247" id="MAM01168c" name="6-oxo-prostaglandin F1alpha" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H33O6">
+      <species metaid="M_MAM01168c" sboTerm="SBO:0000247" id="M_MAM01168c" name="6-oxo-prostaglandin F1alpha" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H33O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01168c">
+            <rdf:Description rdf:about="#M_MAM01168c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:28158"/>
@@ -28522,10 +28521,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01168r" sboTerm="SBO:0000247" id="MAM01168r" name="6-oxo-prostaglandin F1alpha" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H33O6">
+      <species metaid="M_MAM01168r" sboTerm="SBO:0000247" id="M_MAM01168r" name="6-oxo-prostaglandin F1alpha" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H33O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01168r">
+            <rdf:Description rdf:about="#M_MAM01168r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:28158"/>
@@ -28540,10 +28539,10 @@
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-      <species metaid="MAM01169c" sboTerm="SBO:0000247" id="MAM01169c" name="6-phospho-D-gluconate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C6H10O10P">
+      <species metaid="M_MAM01169c" sboTerm="SBO:0000247" id="M_MAM01169c" name="6-phospho-D-gluconate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C6H10O10P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01169c">
+            <rdf:Description rdf:about="#M_MAM01169c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/6pgc"/>
@@ -28559,10 +28558,10 @@
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         </annotation>
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-      <species metaid="MAM01169r" sboTerm="SBO:0000247" id="MAM01169r" name="6-phospho-D-gluconate" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C6H10O10P">
+      <species metaid="M_MAM01169r" sboTerm="SBO:0000247" id="M_MAM01169r" name="6-phospho-D-gluconate" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C6H10O10P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01169r">
+            <rdf:Description rdf:about="#M_MAM01169r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/6pgc"/>
@@ -28578,10 +28577,10 @@
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-      <species metaid="MAM01170c" sboTerm="SBO:0000247" id="MAM01170c" name="6-pyruvoyltetrahydropterin" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H11N5O3">
+      <species metaid="M_MAM01170c" sboTerm="SBO:0000247" id="M_MAM01170c" name="6-pyruvoyltetrahydropterin" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H11N5O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01170c">
+            <rdf:Description rdf:about="#M_MAM01170c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/6pthp"/>
@@ -28596,10 +28595,10 @@
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         </annotation>
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-      <species metaid="MAM01170n" sboTerm="SBO:0000247" id="MAM01170n" name="6-pyruvoyltetrahydropterin" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H11N5O3">
+      <species metaid="M_MAM01170n" sboTerm="SBO:0000247" id="M_MAM01170n" name="6-pyruvoyltetrahydropterin" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H11N5O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01170n">
+            <rdf:Description rdf:about="#M_MAM01170n">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/6pthp"/>
@@ -28614,10 +28613,10 @@
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         </annotation>
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-      <species metaid="MAM01171c" sboTerm="SBO:0000247" id="MAM01171c" name="6-trans-12-epi-LTB4" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O4">
+      <species metaid="M_MAM01171c" sboTerm="SBO:0000247" id="M_MAM01171c" name="6-trans-12-epi-LTB4" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01171c">
+            <rdf:Description rdf:about="#M_MAM01171c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:63982"/>
@@ -28632,10 +28631,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM01171m" sboTerm="SBO:0000247" id="MAM01171m" name="6-trans-12-epi-LTB4" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O4">
+      <species metaid="M_MAM01171m" sboTerm="SBO:0000247" id="M_MAM01171m" name="6-trans-12-epi-LTB4" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01171m">
+            <rdf:Description rdf:about="#M_MAM01171m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:63982"/>
@@ -28650,10 +28649,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM01171x" sboTerm="SBO:0000247" id="MAM01171x" name="6-trans-12-epi-LTB4" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O4">
+      <species metaid="M_MAM01171x" sboTerm="SBO:0000247" id="M_MAM01171x" name="6-trans-12-epi-LTB4" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01171x">
+            <rdf:Description rdf:about="#M_MAM01171x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:63982"/>
@@ -28668,10 +28667,10 @@
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         </annotation>
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-      <species metaid="MAM01172c" sboTerm="SBO:0000247" id="MAM01172c" name="6-trans-LTB4" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H31O4">
+      <species metaid="M_MAM01172c" sboTerm="SBO:0000247" id="M_MAM01172c" name="6-trans-LTB4" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H31O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01172c">
+            <rdf:Description rdf:about="#M_MAM01172c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:63981"/>
@@ -28686,10 +28685,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM01172m" sboTerm="SBO:0000247" id="MAM01172m" name="6-trans-LTB4" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H31O4">
+      <species metaid="M_MAM01172m" sboTerm="SBO:0000247" id="M_MAM01172m" name="6-trans-LTB4" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H31O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01172m">
+            <rdf:Description rdf:about="#M_MAM01172m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:63981"/>
@@ -28704,10 +28703,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01172x" sboTerm="SBO:0000247" id="MAM01172x" name="6-trans-LTB4" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H31O4">
+      <species metaid="M_MAM01172x" sboTerm="SBO:0000247" id="M_MAM01172x" name="6-trans-LTB4" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H31O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01172x">
+            <rdf:Description rdf:about="#M_MAM01172x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:63981"/>
@@ -28722,10 +28721,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01173c" sboTerm="SBO:0000247" id="MAM01173c" name="7,12-dimethylbenz[a]anthracene 5,6-oxide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H16O">
+      <species metaid="M_MAM01173c" sboTerm="SBO:0000247" id="M_MAM01173c" name="7,12-dimethylbenz[a]anthracene 5,6-oxide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H16O">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01173c">
+            <rdf:Description rdf:about="#M_MAM01173c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C19604"/>
@@ -28737,10 +28736,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01174c" sboTerm="SBO:0000247" id="MAM01174c" name="7,12-dimethylbenz[a]anthracene" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H16">
+      <species metaid="M_MAM01174c" sboTerm="SBO:0000247" id="M_MAM01174c" name="7,12-dimethylbenz[a]anthracene" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H16">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01174c">
+            <rdf:Description rdf:about="#M_MAM01174c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C19488"/>
@@ -28753,10 +28752,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01174e" sboTerm="SBO:0000247" id="MAM01174e" name="7,12-dimethylbenz[a]anthracene" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H16">
+      <species metaid="M_MAM01174e" sboTerm="SBO:0000247" id="M_MAM01174e" name="7,12-dimethylbenz[a]anthracene" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H16">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01174e">
+            <rdf:Description rdf:about="#M_MAM01174e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C19488"/>
@@ -28769,10 +28768,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM01175c" sboTerm="SBO:0000247" id="MAM01175c" name="7,8-dihydro-7-hydroxy-8-S-glutathionyl-benzo[a]pyrene" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C30H29N3O7S">
+      <species metaid="M_MAM01175c" sboTerm="SBO:0000247" id="M_MAM01175c" name="7,8-dihydro-7-hydroxy-8-S-glutathionyl-benzo[a]pyrene" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C30H29N3O7S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01175c">
+            <rdf:Description rdf:about="#M_MAM01175c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C14856"/>
@@ -28784,10 +28783,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01176c" sboTerm="SBO:0000247" id="MAM01176c" name="7,8-epoxy-(4Z,10Z)-hexadecadienoic acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C16H25O3">
+      <species metaid="M_MAM01176c" sboTerm="SBO:0000247" id="M_MAM01176c" name="7,8-epoxy-(4Z,10Z)-hexadecadienoic acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C16H25O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01176c">
+            <rdf:Description rdf:about="#M_MAM01176c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/CE2726"/>
@@ -28797,10 +28796,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01177c" sboTerm="SBO:0000247" id="MAM01177c" name="7alpha,12alpha-dihydroxy-5beta-cholestan-3-one" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H46O3">
+      <species metaid="M_MAM01177c" sboTerm="SBO:0000247" id="M_MAM01177c" name="7alpha,12alpha-dihydroxy-5beta-cholestan-3-one" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H46O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01177c">
+            <rdf:Description rdf:about="#M_MAM01177c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/xoldioloneh"/>
@@ -28817,10 +28816,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01178c" sboTerm="SBO:0000247" id="MAM01178c" name="7alpha,12alpha-dihydroxycholest-4-en-3-one" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H44O3">
+      <species metaid="M_MAM01178c" sboTerm="SBO:0000247" id="M_MAM01178c" name="7alpha,12alpha-dihydroxycholest-4-en-3-one" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H44O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01178c">
+            <rdf:Description rdf:about="#M_MAM01178c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/xoldiolone"/>
@@ -28838,10 +28837,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01178r" sboTerm="SBO:0000247" id="MAM01178r" name="7alpha,12alpha-dihydroxycholest-4-en-3-one" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H44O3">
+      <species metaid="M_MAM01178r" sboTerm="SBO:0000247" id="M_MAM01178r" name="7alpha,12alpha-dihydroxycholest-4-en-3-one" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H44O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01178r">
+            <rdf:Description rdf:about="#M_MAM01178r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/xoldiolone"/>
@@ -28859,10 +28858,10 @@
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         </annotation>
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-      <species metaid="MAM01179r" sboTerm="SBO:0000247" id="MAM01179r" name="7alpha,25-dihydroxy-4-cholesten-3-one" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H44O3">
+      <species metaid="M_MAM01179r" sboTerm="SBO:0000247" id="M_MAM01179r" name="7alpha,25-dihydroxy-4-cholesten-3-one" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H44O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01179r">
+            <rdf:Description rdf:about="#M_MAM01179r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/LMST04030107"/>
@@ -28874,10 +28873,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01180m" sboTerm="SBO:0000247" id="MAM01180m" name="7alpha-hydroxy-3-oxo-4-cholestenoic acid" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C27H41O4">
+      <species metaid="M_MAM01180m" sboTerm="SBO:0000247" id="M_MAM01180m" name="7alpha-hydroxy-3-oxo-4-cholestenoic acid" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C27H41O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01180m">
+            <rdf:Description rdf:about="#M_MAM01180m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM164390"/>
@@ -28888,10 +28887,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01181c" sboTerm="SBO:0000247" id="MAM01181c" name="7alpha-hydroxy-5beta-cholestan-3-one" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H46O2">
+      <species metaid="M_MAM01181c" sboTerm="SBO:0000247" id="M_MAM01181c" name="7alpha-hydroxy-5beta-cholestan-3-one" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H46O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01181c">
+            <rdf:Description rdf:about="#M_MAM01181c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/xol7ah"/>
@@ -28908,10 +28907,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01182c" sboTerm="SBO:0000247" id="MAM01182c" name="7alpha-hydroxycholest-4-en-3-one" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H44O2">
+      <species metaid="M_MAM01182c" sboTerm="SBO:0000247" id="M_MAM01182c" name="7alpha-hydroxycholest-4-en-3-one" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H44O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01182c">
+            <rdf:Description rdf:about="#M_MAM01182c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/xol7aone"/>
@@ -28930,10 +28929,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM01182r" sboTerm="SBO:0000247" id="MAM01182r" name="7alpha-hydroxycholest-4-en-3-one" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H44O2">
+      <species metaid="M_MAM01182r" sboTerm="SBO:0000247" id="M_MAM01182r" name="7alpha-hydroxycholest-4-en-3-one" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H44O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01182r">
+            <rdf:Description rdf:about="#M_MAM01182r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/xol7aone"/>
@@ -28952,10 +28951,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01183r" sboTerm="SBO:0000247" id="MAM01183r" name="7alpha-hydroxycholesterol" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H46O2">
+      <species metaid="M_MAM01183r" sboTerm="SBO:0000247" id="M_MAM01183r" name="7alpha-hydroxycholesterol" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H46O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01183r">
+            <rdf:Description rdf:about="#M_MAM01183r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/xol7a"/>
@@ -28973,10 +28972,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01185m" sboTerm="SBO:0000247" id="MAM01185m" name="7-carboxy-alpha-chromanol" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C21H31O4">
+      <species metaid="M_MAM01185m" sboTerm="SBO:0000247" id="M_MAM01185m" name="7-carboxy-alpha-chromanol" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C21H31O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01185m">
+            <rdf:Description rdf:about="#M_MAM01185m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM39011"/>
@@ -28987,10 +28986,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01186m" sboTerm="SBO:0000247" id="MAM01186m" name="7-carboxy-alpha-tocotrienol" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C21H29O4">
+      <species metaid="M_MAM01186m" sboTerm="SBO:0000247" id="M_MAM01186m" name="7-carboxy-alpha-tocotrienol" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C21H29O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01186m">
+            <rdf:Description rdf:about="#M_MAM01186m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM39012"/>
@@ -29001,10 +29000,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01187m" sboTerm="SBO:0000247" id="MAM01187m" name="7-carboxy-gamma-chromanol" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H29O4">
+      <species metaid="M_MAM01187m" sboTerm="SBO:0000247" id="M_MAM01187m" name="7-carboxy-gamma-chromanol" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H29O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01187m">
+            <rdf:Description rdf:about="#M_MAM01187m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM39013"/>
@@ -29015,10 +29014,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01188m" sboTerm="SBO:0000247" id="MAM01188m" name="7-carboxy-gamma-tocotrienol" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H27O4">
+      <species metaid="M_MAM01188m" sboTerm="SBO:0000247" id="M_MAM01188m" name="7-carboxy-gamma-tocotrienol" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H27O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01188m">
+            <rdf:Description rdf:about="#M_MAM01188m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM39014"/>
@@ -29029,10 +29028,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01190c" sboTerm="SBO:0000247" id="MAM01190c" name="7-HETE" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O3">
+      <species metaid="M_MAM01190c" sboTerm="SBO:0000247" id="M_MAM01190c" name="7-HETE" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01190c">
+            <rdf:Description rdf:about="#M_MAM01190c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM163220"/>
@@ -29043,10 +29042,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01191c" sboTerm="SBO:0000247" id="MAM01191c" name="7-hexadecenoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C37H60N7O17P3S">
+      <species metaid="M_MAM01191c" sboTerm="SBO:0000247" id="M_MAM01191c" name="7-hexadecenoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C37H60N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01191c">
+            <rdf:Description rdf:about="#M_MAM01191c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hexde7coa"/>
@@ -29060,10 +29059,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01191m" sboTerm="SBO:0000247" id="MAM01191m" name="7-hexadecenoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C37H60N7O17P3S">
+      <species metaid="M_MAM01191m" sboTerm="SBO:0000247" id="M_MAM01191m" name="7-hexadecenoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C37H60N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01191m">
+            <rdf:Description rdf:about="#M_MAM01191m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hexde7coa"/>
@@ -29077,10 +29076,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01191x" sboTerm="SBO:0000247" id="MAM01191x" name="7-hexadecenoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C37H60N7O17P3S">
+      <species metaid="M_MAM01191x" sboTerm="SBO:0000247" id="M_MAM01191x" name="7-hexadecenoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C37H60N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01191x">
+            <rdf:Description rdf:about="#M_MAM01191x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hexde7coa"/>
@@ -29094,10 +29093,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01191r" sboTerm="SBO:0000247" id="MAM01191r" name="7-hexadecenoyl-CoA" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C37H60N7O17P3S">
+      <species metaid="M_MAM01191r" sboTerm="SBO:0000247" id="M_MAM01191r" name="7-hexadecenoyl-CoA" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C37H60N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01191r">
+            <rdf:Description rdf:about="#M_MAM01191r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hexde7coa"/>
@@ -29111,10 +29110,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01192c" sboTerm="SBO:0000247" id="MAM01192c" name="7-hydroperoxy-H4-neuroprostane" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C22H31O6">
+      <species metaid="M_MAM01192c" sboTerm="SBO:0000247" id="M_MAM01192c" name="7-hydroperoxy-H4-neuroprostane" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C22H31O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01192c">
+            <rdf:Description rdf:about="#M_MAM01192c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM163697"/>
@@ -29125,10 +29124,10 @@
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+      <species metaid="M_MAM01193c" sboTerm="SBO:0000247" id="M_MAM01193c" name="7-hydroxy-D4-neuroprostane" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C22H31O5">
         <annotation>
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-            <rdf:Description rdf:about="#MAM01193c">
+            <rdf:Description rdf:about="#M_MAM01193c">
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                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM39112"/>
@@ -29140,10 +29139,10 @@
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-      <species metaid="MAM01194c" sboTerm="SBO:0000247" id="MAM01194c" name="7-hydroxy-E4-neuroprostane" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C22H31O5">
+      <species metaid="M_MAM01194c" sboTerm="SBO:0000247" id="M_MAM01194c" name="7-hydroxy-E4-neuroprostane" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C22H31O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01194c">
+            <rdf:Description rdf:about="#M_MAM01194c">
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                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM166677"/>
@@ -29154,10 +29153,10 @@
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-      <species metaid="MAM01195c" sboTerm="SBO:0000247" id="MAM01195c" name="7-hydroxymethyl-12-methylbenz[a]anthracene sulfate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H16O4S">
+      <species metaid="M_MAM01195c" sboTerm="SBO:0000247" id="M_MAM01195c" name="7-hydroxymethyl-12-methylbenz[a]anthracene sulfate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H16O4S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01195c">
+            <rdf:Description rdf:about="#M_MAM01195c">
               <bqbiol:is>
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                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C19562"/>
@@ -29169,10 +29168,10 @@
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-      <species metaid="MAM01196c" sboTerm="SBO:0000247" id="MAM01196c" name="7-hydroxymethyl-12-methylbenz[a]anthracene" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H16O">
+      <species metaid="M_MAM01196c" sboTerm="SBO:0000247" id="M_MAM01196c" name="7-hydroxymethyl-12-methylbenz[a]anthracene" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H16O">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01196c">
+            <rdf:Description rdf:about="#M_MAM01196c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C19561"/>
@@ -29184,10 +29183,10 @@
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-      <species metaid="MAM01197c" sboTerm="SBO:0000247" id="MAM01197c" name="7-palmitoleic acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C16H29O2">
+      <species metaid="M_MAM01197c" sboTerm="SBO:0000247" id="M_MAM01197c" name="7-palmitoleic acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C16H29O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01197c">
+            <rdf:Description rdf:about="#M_MAM01197c">
               <bqbiol:is>
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                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/LMFA01030055"/>
@@ -29199,10 +29198,10 @@
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-      <species metaid="MAM01197l" sboTerm="SBO:0000247" id="MAM01197l" name="7-palmitoleic acid" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C16H29O2">
+      <species metaid="M_MAM01197l" sboTerm="SBO:0000247" id="M_MAM01197l" name="7-palmitoleic acid" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C16H29O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01197l">
+            <rdf:Description rdf:about="#M_MAM01197l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/LMFA01030055"/>
@@ -29214,10 +29213,10 @@
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-      <species metaid="MAM01197r" sboTerm="SBO:0000247" id="MAM01197r" name="7-palmitoleic acid" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C16H29O2">
+      <species metaid="M_MAM01197r" sboTerm="SBO:0000247" id="M_MAM01197r" name="7-palmitoleic acid" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C16H29O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01197r">
+            <rdf:Description rdf:about="#M_MAM01197r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/LMFA01030055"/>
@@ -29229,10 +29228,10 @@
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-      <species metaid="MAM01197e" sboTerm="SBO:0000247" id="MAM01197e" name="7-palmitoleic acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C16H29O2">
+      <species metaid="M_MAM01197e" sboTerm="SBO:0000247" id="M_MAM01197e" name="7-palmitoleic acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C16H29O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01197e">
+            <rdf:Description rdf:about="#M_MAM01197e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/LMFA01030055"/>
@@ -29244,10 +29243,10 @@
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         </annotation>
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-      <species metaid="MAM01198c" sboTerm="SBO:0000247" id="MAM01198c" name="7-peroxy-docosahexaenoate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C22H30O4">
+      <species metaid="M_MAM01198c" sboTerm="SBO:0000247" id="M_MAM01198c" name="7-peroxy-docosahexaenoate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C22H30O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01198c">
+            <rdf:Description rdf:about="#M_MAM01198c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM164389"/>
@@ -29258,10 +29257,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM01199m" sboTerm="SBO:0000247" id="MAM01199m" name="8(R)-hydroxy-hexadeca-(2E,4E,6E,10Z)-tetraenoate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C16H23O3">
+      <species metaid="M_MAM01199m" sboTerm="SBO:0000247" id="M_MAM01199m" name="8(R)-hydroxy-hexadeca-(2E,4E,6E,10Z)-tetraenoate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C16H23O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01199m">
+            <rdf:Description rdf:about="#M_MAM01199m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/CE5314"/>
@@ -29271,10 +29270,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01200m" sboTerm="SBO:0000247" id="MAM01200m" name="8(R)-hydroxy-hexadeca-(2E,6E,10Z)-trienoate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C16H25O3">
+      <species metaid="M_MAM01200m" sboTerm="SBO:0000247" id="M_MAM01200m" name="8(R)-hydroxy-hexadeca-(2E,6E,10Z)-trienoate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C16H25O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01200m">
+            <rdf:Description rdf:about="#M_MAM01200m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/CE5315"/>
@@ -29284,10 +29283,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01201m" sboTerm="SBO:0000247" id="MAM01201m" name="8(R)-hydroxy-hexadeca-(4E,6E,10Z)-trienoate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C16H25O3">
+      <species metaid="M_MAM01201m" sboTerm="SBO:0000247" id="M_MAM01201m" name="8(R)-hydroxy-hexadeca-(4E,6E,10Z)-trienoate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C16H25O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01201m">
+            <rdf:Description rdf:about="#M_MAM01201m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/pubchem.compound/6610221"/>
@@ -29298,10 +29297,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM01202c" sboTerm="SBO:0000247" id="MAM01202c" name="8(S)-HETE" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O3">
+      <species metaid="M_MAM01202c" sboTerm="SBO:0000247" id="M_MAM01202c" name="8(S)-HETE" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01202c">
+            <rdf:Description rdf:about="#M_MAM01202c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/LMFA03060006"/>
@@ -29314,10 +29313,10 @@
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-      <species metaid="MAM01204m" sboTerm="SBO:0000247" id="MAM01204m" name="8(S)-hydroxy-hexadeca-(2E,4E,6E,10Z)-tetraenoate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C16H23O3">
+      <species metaid="M_MAM01204m" sboTerm="SBO:0000247" id="M_MAM01204m" name="8(S)-hydroxy-hexadeca-(2E,4E,6E,10Z)-tetraenoate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C16H23O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01204m">
+            <rdf:Description rdf:about="#M_MAM01204m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/CE5326"/>
@@ -29327,10 +29326,10 @@
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-      <species metaid="MAM01205m" sboTerm="SBO:0000247" id="MAM01205m" name="8(S)-hydroxy-hexadeca-(2E,6E,10Z)-trienoate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C16H25O3">
+      <species metaid="M_MAM01205m" sboTerm="SBO:0000247" id="M_MAM01205m" name="8(S)-hydroxy-hexadeca-(2E,6E,10Z)-trienoate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C16H25O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01205m">
+            <rdf:Description rdf:about="#M_MAM01205m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/CE5327"/>
@@ -29340,10 +29339,10 @@
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       </species>
-      <species metaid="MAM01206m" sboTerm="SBO:0000247" id="MAM01206m" name="8(S)-hydroxy-hexadeca-(4E,6E,10Z)-trienoate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C16H25O3">
+      <species metaid="M_MAM01206m" sboTerm="SBO:0000247" id="M_MAM01206m" name="8(S)-hydroxy-hexadeca-(4E,6E,10Z)-trienoate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C16H25O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01206m">
+            <rdf:Description rdf:about="#M_MAM01206m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/pubchem.compound/6610221"/>
@@ -29354,10 +29353,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01207c" sboTerm="SBO:0000247" id="MAM01207c" name="8,11-eicosadienoic acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H35O2">
+      <species metaid="M_MAM01207c" sboTerm="SBO:0000247" id="M_MAM01207c" name="8,11-eicosadienoic acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H35O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01207c">
+            <rdf:Description rdf:about="#M_MAM01207c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/LMFA01030376"/>
@@ -29370,10 +29369,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01207l" sboTerm="SBO:0000247" id="MAM01207l" name="8,11-eicosadienoic acid" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H35O2">
+      <species metaid="M_MAM01207l" sboTerm="SBO:0000247" id="M_MAM01207l" name="8,11-eicosadienoic acid" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H35O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01207l">
+            <rdf:Description rdf:about="#M_MAM01207l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/LMFA01030376"/>
@@ -29386,10 +29385,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01207r" sboTerm="SBO:0000247" id="MAM01207r" name="8,11-eicosadienoic acid" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H35O2">
+      <species metaid="M_MAM01207r" sboTerm="SBO:0000247" id="M_MAM01207r" name="8,11-eicosadienoic acid" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H35O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01207r">
+            <rdf:Description rdf:about="#M_MAM01207r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/LMFA01030376"/>
@@ -29402,10 +29401,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01207e" sboTerm="SBO:0000247" id="MAM01207e" name="8,11-eicosadienoic acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H35O2">
+      <species metaid="M_MAM01207e" sboTerm="SBO:0000247" id="M_MAM01207e" name="8,11-eicosadienoic acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H35O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01207e">
+            <rdf:Description rdf:about="#M_MAM01207e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/LMFA01030376"/>
@@ -29418,10 +29417,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01208c" sboTerm="SBO:0000247" id="MAM01208c" name="8,9-DHET" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H33O4">
+      <species metaid="M_MAM01208c" sboTerm="SBO:0000247" id="M_MAM01208c" name="8,9-DHET" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H33O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01208c">
+            <rdf:Description rdf:about="#M_MAM01208c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/LMFA03050006"/>
@@ -29433,10 +29432,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01209c" sboTerm="SBO:0000247" id="MAM01209c" name="8,9-EET" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O3">
+      <species metaid="M_MAM01209c" sboTerm="SBO:0000247" id="M_MAM01209c" name="8,9-EET" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01209c">
+            <rdf:Description rdf:about="#M_MAM01209c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:34490"/>
@@ -29452,10 +29451,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01209r" sboTerm="SBO:0000247" id="MAM01209r" name="8,9-EET" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O3">
+      <species metaid="M_MAM01209r" sboTerm="SBO:0000247" id="M_MAM01209r" name="8,9-EET" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01209r">
+            <rdf:Description rdf:about="#M_MAM01209r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:34490"/>
@@ -29471,10 +29470,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01210c" sboTerm="SBO:0000247" id="MAM01210c" name="8,9-epoxy-(5Z)-tetradecenoic acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C14H24O3">
+      <species metaid="M_MAM01210c" sboTerm="SBO:0000247" id="M_MAM01210c" name="8,9-epoxy-(5Z)-tetradecenoic acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C14H24O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01210c">
+            <rdf:Description rdf:about="#M_MAM01210c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/CE2729"/>
@@ -29484,10 +29483,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01211c" sboTerm="SBO:0000247" id="MAM01211c" name="8alpha-hydroxy-gamma-tocopherone" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C28H48O3">
+      <species metaid="M_MAM01211c" sboTerm="SBO:0000247" id="M_MAM01211c" name="8alpha-hydroxy-gamma-tocopherone" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C28H48O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01211c">
+            <rdf:Description rdf:about="#M_MAM01211c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM151611"/>
@@ -29498,10 +29497,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01212c" sboTerm="SBO:0000247" id="MAM01212c" name="8alpha-hydroxytocopherone" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C29H50O3">
+      <species metaid="M_MAM01212c" sboTerm="SBO:0000247" id="M_MAM01212c" name="8alpha-hydroxytocopherone" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C29H50O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01212c">
+            <rdf:Description rdf:about="#M_MAM01212c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM166711"/>
@@ -29512,10 +29511,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01213c" sboTerm="SBO:0000247" id="MAM01213c" name="8-HETE" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O3">
+      <species metaid="M_MAM01213c" sboTerm="SBO:0000247" id="M_MAM01213c" name="8-HETE" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01213c">
+            <rdf:Description rdf:about="#M_MAM01213c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/LMFA03060086"/>
@@ -29528,10 +29527,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01214c" sboTerm="SBO:0000247" id="MAM01214c" name="8-peroxy-(5Z,9E,11Z,14Z)-eicosatetraenoate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H30O4">
+      <species metaid="M_MAM01214c" sboTerm="SBO:0000247" id="M_MAM01214c" name="8-peroxy-(5Z,9E,11Z,14Z)-eicosatetraenoate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H30O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01214c">
+            <rdf:Description rdf:about="#M_MAM01214c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/CE5928"/>
@@ -29541,10 +29540,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01215c" sboTerm="SBO:0000247" id="MAM01215c" name="8-peroxy-docosahexaenoate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C22H30O4">
+      <species metaid="M_MAM01215c" sboTerm="SBO:0000247" id="M_MAM01215c" name="8-peroxy-docosahexaenoate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C22H30O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01215c">
+            <rdf:Description rdf:about="#M_MAM01215c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM166710"/>
@@ -29555,10 +29554,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01216c" sboTerm="SBO:0000247" id="MAM01216c" name="9(10)-EpOME" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H31O3">
+      <species metaid="M_MAM01216c" sboTerm="SBO:0000247" id="M_MAM01216c" name="9(10)-EpOME" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H31O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01216c">
+            <rdf:Description rdf:about="#M_MAM01216c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/hmdb/HMDB04701"/>
@@ -29574,10 +29573,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01216r" sboTerm="SBO:0000247" id="MAM01216r" name="9(10)-EpOME" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H31O3">
+      <species metaid="M_MAM01216r" sboTerm="SBO:0000247" id="M_MAM01216r" name="9(10)-EpOME" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H31O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01216r">
+            <rdf:Description rdf:about="#M_MAM01216r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/hmdb/HMDB04701"/>
@@ -29593,10 +29592,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01217c" sboTerm="SBO:0000247" id="MAM01217c" name="9(S)-HPODE" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H31O4">
+      <species metaid="M_MAM01217c" sboTerm="SBO:0000247" id="M_MAM01217c" name="9(S)-HPODE" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H31O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01217c">
+            <rdf:Description rdf:about="#M_MAM01217c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:34498"/>
@@ -29610,10 +29609,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01218c" sboTerm="SBO:0000247" id="MAM01218c" name="9,10-12,13-diepoxy-octadecanoate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H31O4">
+      <species metaid="M_MAM01218c" sboTerm="SBO:0000247" id="M_MAM01218c" name="9,10-12,13-diepoxy-octadecanoate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H31O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01218c">
+            <rdf:Description rdf:about="#M_MAM01218c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM15096"/>
@@ -29625,10 +29624,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01219c" sboTerm="SBO:0000247" id="MAM01219c" name="9,10-epoxy-(6Z,12Z)-octadecadienoic acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H29O3">
+      <species metaid="M_MAM01219c" sboTerm="SBO:0000247" id="M_MAM01219c" name="9,10-epoxy-(6Z,12Z)-octadecadienoic acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H29O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01219c">
+            <rdf:Description rdf:about="#M_MAM01219c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/LMFA02000037"/>
@@ -29639,10 +29638,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01220c" sboTerm="SBO:0000247" id="MAM01220c" name="9,10-hydroxyoctadec-12(Z)-enoate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H33O4">
+      <species metaid="M_MAM01220c" sboTerm="SBO:0000247" id="M_MAM01220c" name="9,10-hydroxyoctadec-12(Z)-enoate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H33O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01220c">
+            <rdf:Description rdf:about="#M_MAM01220c">
               <bqbiol:is>
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                   <rdf:li rdf:resource="https://identifiers.org/hmdb/HMDB04704"/>
@@ -29656,10 +29655,10 @@
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-      <species metaid="MAM01220r" sboTerm="SBO:0000247" id="MAM01220r" name="9,10-hydroxyoctadec-12(Z)-enoate" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H33O4">
+      <species metaid="M_MAM01220r" sboTerm="SBO:0000247" id="M_MAM01220r" name="9,10-hydroxyoctadec-12(Z)-enoate" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H33O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01220r">
+            <rdf:Description rdf:about="#M_MAM01220r">
               <bqbiol:is>
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                   <rdf:li rdf:resource="https://identifiers.org/hmdb/HMDB04704"/>
@@ -29673,10 +29672,10 @@
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       </species>
-      <species metaid="MAM01221c" sboTerm="SBO:0000247" id="MAM01221c" name="9,11,15-trihydroxyprosta-(5Z,13E)-dien-1-oate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H33O5">
+      <species metaid="M_MAM01221c" sboTerm="SBO:0000247" id="M_MAM01221c" name="9,11,15-trihydroxyprosta-(5Z,13E)-dien-1-oate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H33O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01221c">
+            <rdf:Description rdf:about="#M_MAM01221c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/pubchem.compound/5283078"/>
@@ -29687,10 +29686,10 @@
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       </species>
-      <species metaid="MAM01222c" sboTerm="SBO:0000247" id="MAM01222c" name="9,11-cycloperoxy-15-hydroperoxy-(5Z,13E)-eicosadienoate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O6">
+      <species metaid="M_MAM01222c" sboTerm="SBO:0000247" id="M_MAM01222c" name="9,11-cycloperoxy-15-hydroperoxy-(5Z,13E)-eicosadienoate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01222c">
+            <rdf:Description rdf:about="#M_MAM01222c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/CE5533"/>
@@ -29700,10 +29699,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM01223c" sboTerm="SBO:0000247" id="MAM01223c" name="9,11-cycloperoxy-5-hydroperoxy-(6E,14Z)-eicosadienoate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O6">
+      <species metaid="M_MAM01223c" sboTerm="SBO:0000247" id="M_MAM01223c" name="9,11-cycloperoxy-5-hydroperoxy-(6E,14Z)-eicosadienoate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01223c">
+            <rdf:Description rdf:about="#M_MAM01223c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/CE5534"/>
@@ -29713,10 +29712,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM01224c" sboTerm="SBO:0000247" id="MAM01224c" name="9,13-cis-retinoate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H27O2">
+      <species metaid="M_MAM01224c" sboTerm="SBO:0000247" id="M_MAM01224c" name="9,13-cis-retinoate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H27O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01224c">
+            <rdf:Description rdf:about="#M_MAM01224c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM118676"/>
@@ -29728,10 +29727,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM01225m" sboTerm="SBO:0000247" id="MAM01225m" name="9-carboxy-alpha-chromanol" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H37O4">
+      <species metaid="M_MAM01225m" sboTerm="SBO:0000247" id="M_MAM01225m" name="9-carboxy-alpha-chromanol" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H37O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01225m">
+            <rdf:Description rdf:about="#M_MAM01225m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM39475"/>
@@ -29742,10 +29741,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM01226m" sboTerm="SBO:0000247" id="MAM01226m" name="9-carboxy-alpha-tocotrienol" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H33O4">
+      <species metaid="M_MAM01226m" sboTerm="SBO:0000247" id="M_MAM01226m" name="9-carboxy-alpha-tocotrienol" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H33O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01226m">
+            <rdf:Description rdf:about="#M_MAM01226m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM39476"/>
@@ -29756,10 +29755,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM01227m" sboTerm="SBO:0000247" id="MAM01227m" name="9-carboxy-gamma-chromanol" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C23H35O4">
+      <species metaid="M_MAM01227m" sboTerm="SBO:0000247" id="M_MAM01227m" name="9-carboxy-gamma-chromanol" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C23H35O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01227m">
+            <rdf:Description rdf:about="#M_MAM01227m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM39477"/>
@@ -29770,10 +29769,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01228m" sboTerm="SBO:0000247" id="MAM01228m" name="9-carboxy-gamma-tocotrienol" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C23H31O4">
+      <species metaid="M_MAM01228m" sboTerm="SBO:0000247" id="M_MAM01228m" name="9-carboxy-gamma-tocotrienol" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C23H31O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01228m">
+            <rdf:Description rdf:about="#M_MAM01228m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM39478"/>
@@ -29784,10 +29783,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01229c" sboTerm="SBO:0000247" id="MAM01229c" name="9-cis-4-oxo-13,14-dihydro-retinoate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H27O3">
+      <species metaid="M_MAM01229c" sboTerm="SBO:0000247" id="M_MAM01229c" name="9-cis-4-oxo-13,14-dihydro-retinoate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H27O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01229c">
+            <rdf:Description rdf:about="#M_MAM01229c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM166718"/>
@@ -29798,10 +29797,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01230c" sboTerm="SBO:0000247" id="MAM01230c" name="9-cis-retinal" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H28O">
+      <species metaid="M_MAM01230c" sboTerm="SBO:0000247" id="M_MAM01230c" name="9-cis-retinal" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H28O">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01230c">
+            <rdf:Description rdf:about="#M_MAM01230c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/retinal_cis_9"/>
@@ -29815,10 +29814,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01230r" sboTerm="SBO:0000247" id="MAM01230r" name="9-cis-retinal" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H28O">
+      <species metaid="M_MAM01230r" sboTerm="SBO:0000247" id="M_MAM01230r" name="9-cis-retinal" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H28O">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01230r">
+            <rdf:Description rdf:about="#M_MAM01230r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/retinal_cis_9"/>
@@ -29832,10 +29831,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01231c" sboTerm="SBO:0000247" id="MAM01231c" name="9-cis-retinoate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H27O2">
+      <species metaid="M_MAM01231c" sboTerm="SBO:0000247" id="M_MAM01231c" name="9-cis-retinoate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H27O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01231c">
+            <rdf:Description rdf:about="#M_MAM01231c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM10472"/>
@@ -29847,10 +29846,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM01231r" sboTerm="SBO:0000247" id="MAM01231r" name="9-cis-retinoate" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H27O2">
+      <species metaid="M_MAM01231r" sboTerm="SBO:0000247" id="M_MAM01231r" name="9-cis-retinoate" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H27O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01231r">
+            <rdf:Description rdf:about="#M_MAM01231r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM10472"/>
@@ -29862,10 +29861,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01232c" sboTerm="SBO:0000247" id="MAM01232c" name="9-cis-retinol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H30O">
+      <species metaid="M_MAM01232c" sboTerm="SBO:0000247" id="M_MAM01232c" name="9-cis-retinol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H30O">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01232c">
+            <rdf:Description rdf:about="#M_MAM01232c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/retinol_9_cis"/>
@@ -29880,10 +29879,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01233c" sboTerm="SBO:0000247" id="MAM01233c" name="9-cis-retinoyl-beta-D-glucuronide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C26H35O8">
+      <species metaid="M_MAM01233c" sboTerm="SBO:0000247" id="M_MAM01233c" name="9-cis-retinoyl-beta-D-glucuronide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C26H35O8">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01233c">
+            <rdf:Description rdf:about="#M_MAM01233c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM166720"/>
@@ -29895,10 +29894,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01233r" sboTerm="SBO:0000247" id="MAM01233r" name="9-cis-retinoyl-beta-D-glucuronide" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C26H35O8">
+      <species metaid="M_MAM01233r" sboTerm="SBO:0000247" id="M_MAM01233r" name="9-cis-retinoyl-beta-D-glucuronide" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C26H35O8">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01233r">
+            <rdf:Description rdf:about="#M_MAM01233r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM166720"/>
@@ -29910,10 +29909,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM01234c" sboTerm="SBO:0000247" id="MAM01234c" name="9-deoxy-delta12-PGD2" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O4">
+      <species metaid="M_MAM01234c" sboTerm="SBO:0000247" id="M_MAM01234c" name="9-deoxy-delta12-PGD2" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01234c">
+            <rdf:Description rdf:about="#M_MAM01234c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM151627"/>
@@ -29924,10 +29923,10 @@
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-      <species metaid="MAM01235c" sboTerm="SBO:0000247" id="MAM01235c" name="9-eicosenoic acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H37O2">
+      <species metaid="M_MAM01235c" sboTerm="SBO:0000247" id="M_MAM01235c" name="9-eicosenoic acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H37O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01235c">
+            <rdf:Description rdf:about="#M_MAM01235c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:32419"/>
@@ -29941,10 +29940,10 @@
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-      <species metaid="MAM01235l" sboTerm="SBO:0000247" id="MAM01235l" name="9-eicosenoic acid" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H37O2">
+      <species metaid="M_MAM01235l" sboTerm="SBO:0000247" id="M_MAM01235l" name="9-eicosenoic acid" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H37O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01235l">
+            <rdf:Description rdf:about="#M_MAM01235l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:32419"/>
@@ -29958,10 +29957,10 @@
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-      <species metaid="MAM01235r" sboTerm="SBO:0000247" id="MAM01235r" name="9-eicosenoic acid" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H37O2">
+      <species metaid="M_MAM01235r" sboTerm="SBO:0000247" id="M_MAM01235r" name="9-eicosenoic acid" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H37O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01235r">
+            <rdf:Description rdf:about="#M_MAM01235r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:32419"/>
@@ -29975,10 +29974,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM01235e" sboTerm="SBO:0000247" id="MAM01235e" name="9-eicosenoic acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H37O2">
+      <species metaid="M_MAM01235e" sboTerm="SBO:0000247" id="M_MAM01235e" name="9-eicosenoic acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H37O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01235e">
+            <rdf:Description rdf:about="#M_MAM01235e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:32419"/>
@@ -29992,10 +29991,10 @@
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       </species>
-      <species metaid="MAM01236c" sboTerm="SBO:0000247" id="MAM01236c" name="9-eicosenoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H68N7O17P3S">
+      <species metaid="M_MAM01236c" sboTerm="SBO:0000247" id="M_MAM01236c" name="9-eicosenoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H68N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01236c">
+            <rdf:Description rdf:about="#M_MAM01236c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M01236"/>
@@ -30005,10 +30004,10 @@
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-      <species metaid="MAM01236m" sboTerm="SBO:0000247" id="MAM01236m" name="9-eicosenoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H68N7O17P3S">
+      <species metaid="M_MAM01236m" sboTerm="SBO:0000247" id="M_MAM01236m" name="9-eicosenoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H68N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01236m">
+            <rdf:Description rdf:about="#M_MAM01236m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M01236"/>
@@ -30018,10 +30017,10 @@
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         </annotation>
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-      <species metaid="MAM01236r" sboTerm="SBO:0000247" id="MAM01236r" name="9-eicosenoyl-CoA" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H68N7O17P3S">
+      <species metaid="M_MAM01236r" sboTerm="SBO:0000247" id="M_MAM01236r" name="9-eicosenoyl-CoA" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H68N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01236r">
+            <rdf:Description rdf:about="#M_MAM01236r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M01236"/>
@@ -30031,10 +30030,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01237c" sboTerm="SBO:0000247" id="MAM01237c" name="9-heptadecenoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C38H62N7O17P3S">
+      <species metaid="M_MAM01237c" sboTerm="SBO:0000247" id="M_MAM01237c" name="9-heptadecenoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C38H62N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01237c">
+            <rdf:Description rdf:about="#M_MAM01237c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM146023"/>
@@ -30045,10 +30044,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01237m" sboTerm="SBO:0000247" id="MAM01237m" name="9-heptadecenoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C38H62N7O17P3S">
+      <species metaid="M_MAM01237m" sboTerm="SBO:0000247" id="M_MAM01237m" name="9-heptadecenoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C38H62N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01237m">
+            <rdf:Description rdf:about="#M_MAM01237m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM146023"/>
@@ -30059,10 +30058,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01237r" sboTerm="SBO:0000247" id="MAM01237r" name="9-heptadecenoyl-CoA" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C38H62N7O17P3S">
+      <species metaid="M_MAM01237r" sboTerm="SBO:0000247" id="M_MAM01237r" name="9-heptadecenoyl-CoA" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C38H62N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01237r">
+            <rdf:Description rdf:about="#M_MAM01237r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM146023"/>
@@ -30073,10 +30072,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01238c" sboTerm="SBO:0000247" id="MAM01238c" name="9-heptadecylenic acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C17H31O2">
+      <species metaid="M_MAM01238c" sboTerm="SBO:0000247" id="M_MAM01238c" name="9-heptadecylenic acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C17H31O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01238c">
+            <rdf:Description rdf:about="#M_MAM01238c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C16536"/>
@@ -30091,10 +30090,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01238l" sboTerm="SBO:0000247" id="MAM01238l" name="9-heptadecylenic acid" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C17H31O2">
+      <species metaid="M_MAM01238l" sboTerm="SBO:0000247" id="M_MAM01238l" name="9-heptadecylenic acid" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C17H31O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01238l">
+            <rdf:Description rdf:about="#M_MAM01238l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C16536"/>
@@ -30109,10 +30108,10 @@
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         </annotation>
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-      <species metaid="MAM01238r" sboTerm="SBO:0000247" id="MAM01238r" name="9-heptadecylenic acid" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C17H31O2">
+      <species metaid="M_MAM01238r" sboTerm="SBO:0000247" id="M_MAM01238r" name="9-heptadecylenic acid" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C17H31O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01238r">
+            <rdf:Description rdf:about="#M_MAM01238r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C16536"/>
@@ -30127,10 +30126,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01238e" sboTerm="SBO:0000247" id="MAM01238e" name="9-heptadecylenic acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C17H31O2">
+      <species metaid="M_MAM01238e" sboTerm="SBO:0000247" id="M_MAM01238e" name="9-heptadecylenic acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C17H31O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01238e">
+            <rdf:Description rdf:about="#M_MAM01238e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C16536"/>
@@ -30145,10 +30144,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01239c" sboTerm="SBO:0000247" id="MAM01239c" name="9-HETE" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O3">
+      <species metaid="M_MAM01239c" sboTerm="SBO:0000247" id="M_MAM01239c" name="9-HETE" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01239c">
+            <rdf:Description rdf:about="#M_MAM01239c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/LMFA03060089"/>
@@ -30161,10 +30160,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01240c" sboTerm="SBO:0000247" id="MAM01240c" name="9-hydroxy-10-O-D-glucuronoside-(12Z)-octadecenoate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C24H40O10">
+      <species metaid="M_MAM01240c" sboTerm="SBO:0000247" id="M_MAM01240c" name="9-hydroxy-10-O-D-glucuronoside-(12Z)-octadecenoate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C24H40O10">
         <annotation>
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-            <rdf:Description rdf:about="#MAM01240c">
+            <rdf:Description rdf:about="#M_MAM01240c">
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                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM151630"/>
@@ -30175,10 +30174,10 @@
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         </annotation>
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-      <species metaid="MAM01240r" sboTerm="SBO:0000247" id="MAM01240r" name="9-hydroxy-10-O-D-glucuronoside-(12Z)-octadecenoate" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C24H40O10">
+      <species metaid="M_MAM01240r" sboTerm="SBO:0000247" id="M_MAM01240r" name="9-hydroxy-10-O-D-glucuronoside-(12Z)-octadecenoate" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C24H40O10">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01240r">
+            <rdf:Description rdf:about="#M_MAM01240r">
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                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM151630"/>
@@ -30189,10 +30188,10 @@
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-      <species metaid="MAM01241c" sboTerm="SBO:0000247" id="MAM01241c" name="9-hydroxybenzo[a]pyrene" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H12O">
+      <species metaid="M_MAM01241c" sboTerm="SBO:0000247" id="M_MAM01241c" name="9-hydroxybenzo[a]pyrene" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H12O">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01241c">
+            <rdf:Description rdf:about="#M_MAM01241c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C14556"/>
@@ -30204,10 +30203,10 @@
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-      <species metaid="MAM01242c" sboTerm="SBO:0000247" id="MAM01242c" name="9-hydroxybenzo[a]pyrene-4,5-oxide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H12O2">
+      <species metaid="M_MAM01242c" sboTerm="SBO:0000247" id="M_MAM01242c" name="9-hydroxybenzo[a]pyrene-4,5-oxide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H12O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01242c">
+            <rdf:Description rdf:about="#M_MAM01242c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C14854"/>
@@ -30219,10 +30218,10 @@
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-      <species metaid="MAM01244c" sboTerm="SBO:0000247" id="MAM01244c" name="9-O-acetylated-GD3" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C54H90N3O29RCO">
+      <species metaid="M_MAM01244c" sboTerm="SBO:0000247" id="M_MAM01244c" name="9-O-acetylated-GD3" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C54H90N3O29RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01244c">
+            <rdf:Description rdf:about="#M_MAM01244c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/oagd3_hs"/>
@@ -30234,10 +30233,10 @@
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-      <species metaid="MAM01244g" sboTerm="SBO:0000247" id="MAM01244g" name="9-O-acetylated-GD3" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C54H90N3O29RCO">
+      <species metaid="M_MAM01244g" sboTerm="SBO:0000247" id="M_MAM01244g" name="9-O-acetylated-GD3" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C54H90N3O29RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01244g">
+            <rdf:Description rdf:about="#M_MAM01244g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/oagd3_hs"/>
@@ -30249,10 +30248,10 @@
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         </annotation>
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-      <species metaid="MAM01244e" sboTerm="SBO:0000247" id="MAM01244e" name="9-O-acetylated-GD3" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C54H90N3O29RCO">
+      <species metaid="M_MAM01244e" sboTerm="SBO:0000247" id="M_MAM01244e" name="9-O-acetylated-GD3" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C54H90N3O29RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01244e">
+            <rdf:Description rdf:about="#M_MAM01244e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/oagd3_hs"/>
@@ -30264,10 +30263,10 @@
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         </annotation>
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-      <species metaid="MAM01245c" sboTerm="SBO:0000247" id="MAM01245c" name="9-O-acetylated-GT3" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C65H106N4O37RCO">
+      <species metaid="M_MAM01245c" sboTerm="SBO:0000247" id="M_MAM01245c" name="9-O-acetylated-GT3" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C65H106N4O37RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01245c">
+            <rdf:Description rdf:about="#M_MAM01245c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/oagt3_hs"/>
@@ -30279,10 +30278,10 @@
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         </annotation>
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-      <species metaid="MAM01245g" sboTerm="SBO:0000247" id="MAM01245g" name="9-O-acetylated-GT3" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C65H106N4O37RCO">
+      <species metaid="M_MAM01245g" sboTerm="SBO:0000247" id="M_MAM01245g" name="9-O-acetylated-GT3" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C65H106N4O37RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01245g">
+            <rdf:Description rdf:about="#M_MAM01245g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/oagt3_hs"/>
@@ -30294,10 +30293,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM01245e" sboTerm="SBO:0000247" id="MAM01245e" name="9-O-acetylated-GT3" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C65H106N4O37RCO">
+      <species metaid="M_MAM01245e" sboTerm="SBO:0000247" id="M_MAM01245e" name="9-O-acetylated-GT3" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C65H106N4O37RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01245e">
+            <rdf:Description rdf:about="#M_MAM01245e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/oagt3_hs"/>
@@ -30309,10 +30308,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01246c" sboTerm="SBO:0000247" id="MAM01246c" name="9-peroxy-(5Z,7E,11Z,14Z)-eicosatetraenoate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H30O4">
+      <species metaid="M_MAM01246c" sboTerm="SBO:0000247" id="M_MAM01246c" name="9-peroxy-(5Z,7E,11Z,14Z)-eicosatetraenoate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H30O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01246c">
+            <rdf:Description rdf:about="#M_MAM01246c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM151634"/>
@@ -30323,10 +30322,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01247c" sboTerm="SBO:0000247" id="MAM01247c" name="A2PE" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C47H62NO8PR2">
+      <species metaid="M_MAM01247c" sboTerm="SBO:0000247" id="M_MAM01247c" name="A2PE" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C47H62NO8PR2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01247c">
+            <rdf:Description rdf:about="#M_MAM01247c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:71980"/>
@@ -30338,10 +30337,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01248c" sboTerm="SBO:0000247" id="MAM01248c" name="A2PE-H2" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C47H64NO8PR2">
+      <species metaid="M_MAM01248c" sboTerm="SBO:0000247" id="M_MAM01248c" name="A2PE-H2" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C47H64NO8PR2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01248c">
+            <rdf:Description rdf:about="#M_MAM01248c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM50735"/>
@@ -30352,10 +30351,10 @@
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         </annotation>
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-      <species metaid="MAM01249c" sboTerm="SBO:0000247" id="MAM01249c" name="acetaldehyde" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C2H4O">
+      <species metaid="M_MAM01249c" sboTerm="SBO:0000247" id="M_MAM01249c" name="acetaldehyde" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C2H4O">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01249c">
+            <rdf:Description rdf:about="#M_MAM01249c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/acald"/>
@@ -30371,10 +30370,10 @@
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-      <species metaid="MAM01249m" sboTerm="SBO:0000247" id="MAM01249m" name="acetaldehyde" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C2H4O">
+      <species metaid="M_MAM01249m" sboTerm="SBO:0000247" id="M_MAM01249m" name="acetaldehyde" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C2H4O">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01249m">
+            <rdf:Description rdf:about="#M_MAM01249m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/acald"/>
@@ -30390,10 +30389,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM01249x" sboTerm="SBO:0000247" id="MAM01249x" name="acetaldehyde" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C2H4O">
+      <species metaid="M_MAM01249x" sboTerm="SBO:0000247" id="M_MAM01249x" name="acetaldehyde" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C2H4O">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01249x">
+            <rdf:Description rdf:about="#M_MAM01249x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/acald"/>
@@ -30409,10 +30408,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01249r" sboTerm="SBO:0000247" id="MAM01249r" name="acetaldehyde" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C2H4O">
+      <species metaid="M_MAM01249r" sboTerm="SBO:0000247" id="M_MAM01249r" name="acetaldehyde" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C2H4O">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01249r">
+            <rdf:Description rdf:about="#M_MAM01249r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/acald"/>
@@ -30428,10 +30427,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01249e" sboTerm="SBO:0000247" id="MAM01249e" name="acetaldehyde" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C2H4O">
+      <species metaid="M_MAM01249e" sboTerm="SBO:0000247" id="M_MAM01249e" name="acetaldehyde" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C2H4O">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01249e">
+            <rdf:Description rdf:about="#M_MAM01249e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/acald"/>
@@ -30447,10 +30446,10 @@
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-      <species metaid="MAM01250c" sboTerm="SBO:0000247" id="MAM01250c" name="acetamidopropanal" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H9NO2">
+      <species metaid="M_MAM01250c" sboTerm="SBO:0000247" id="M_MAM01250c" name="acetamidopropanal" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H9NO2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01250c">
+            <rdf:Description rdf:about="#M_MAM01250c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM771"/>
@@ -30462,10 +30461,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM01250x" sboTerm="SBO:0000247" id="MAM01250x" name="acetamidopropanal" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H9NO2">
+      <species metaid="M_MAM01250x" sboTerm="SBO:0000247" id="M_MAM01250x" name="acetamidopropanal" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H9NO2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01250x">
+            <rdf:Description rdf:about="#M_MAM01250x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM771"/>
@@ -30477,10 +30476,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM01252c" sboTerm="SBO:0000247" id="MAM01252c" name="acetate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C2H3O2">
+      <species metaid="M_MAM01252c" sboTerm="SBO:0000247" id="M_MAM01252c" name="acetate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C2H3O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01252c">
+            <rdf:Description rdf:about="#M_MAM01252c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ac"/>
@@ -30497,10 +30496,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01252g" sboTerm="SBO:0000247" id="MAM01252g" name="acetate" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C2H3O2">
+      <species metaid="M_MAM01252g" sboTerm="SBO:0000247" id="M_MAM01252g" name="acetate" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C2H3O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01252g">
+            <rdf:Description rdf:about="#M_MAM01252g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ac"/>
@@ -30517,10 +30516,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01252m" sboTerm="SBO:0000247" id="MAM01252m" name="acetate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C2H3O2">
+      <species metaid="M_MAM01252m" sboTerm="SBO:0000247" id="M_MAM01252m" name="acetate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C2H3O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01252m">
+            <rdf:Description rdf:about="#M_MAM01252m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ac"/>
@@ -30537,10 +30536,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01252x" sboTerm="SBO:0000247" id="MAM01252x" name="acetate" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C2H3O2">
+      <species metaid="M_MAM01252x" sboTerm="SBO:0000247" id="M_MAM01252x" name="acetate" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C2H3O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01252x">
+            <rdf:Description rdf:about="#M_MAM01252x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ac"/>
@@ -30557,10 +30556,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01252r" sboTerm="SBO:0000247" id="MAM01252r" name="acetate" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C2H3O2">
+      <species metaid="M_MAM01252r" sboTerm="SBO:0000247" id="M_MAM01252r" name="acetate" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C2H3O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01252r">
+            <rdf:Description rdf:about="#M_MAM01252r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ac"/>
@@ -30577,10 +30576,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01252e" sboTerm="SBO:0000247" id="MAM01252e" name="acetate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C2H3O2">
+      <species metaid="M_MAM01252e" sboTerm="SBO:0000247" id="M_MAM01252e" name="acetate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C2H3O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01252e">
+            <rdf:Description rdf:about="#M_MAM01252e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ac"/>
@@ -30597,10 +30596,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01253c" sboTerm="SBO:0000247" id="MAM01253c" name="acetoacetate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C4H5O3">
+      <species metaid="M_MAM01253c" sboTerm="SBO:0000247" id="M_MAM01253c" name="acetoacetate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C4H5O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01253c">
+            <rdf:Description rdf:about="#M_MAM01253c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/acac"/>
@@ -30617,10 +30616,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01253m" sboTerm="SBO:0000247" id="MAM01253m" name="acetoacetate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C4H5O3">
+      <species metaid="M_MAM01253m" sboTerm="SBO:0000247" id="M_MAM01253m" name="acetoacetate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C4H5O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01253m">
+            <rdf:Description rdf:about="#M_MAM01253m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/acac"/>
@@ -30637,10 +30636,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01253e" sboTerm="SBO:0000247" id="MAM01253e" name="acetoacetate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C4H5O3">
+      <species metaid="M_MAM01253e" sboTerm="SBO:0000247" id="M_MAM01253e" name="acetoacetate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C4H5O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01253e">
+            <rdf:Description rdf:about="#M_MAM01253e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/acac"/>
@@ -30657,10 +30656,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01254c" sboTerm="SBO:0000247" id="MAM01254c" name="acetoacetyl-[ACP]" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C15H25N2O9PRS">
+      <species metaid="M_MAM01254c" sboTerm="SBO:0000247" id="M_MAM01254c" name="acetoacetyl-[ACP]" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C15H25N2O9PRS">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01254c">
+            <rdf:Description rdf:about="#M_MAM01254c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C05744"/>
@@ -30672,10 +30671,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01255c" sboTerm="SBO:0000247" id="MAM01255c" name="acetoacetyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C25H36N7O18P3S">
+      <species metaid="M_MAM01255c" sboTerm="SBO:0000247" id="M_MAM01255c" name="acetoacetyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C25H36N7O18P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01255c">
+            <rdf:Description rdf:about="#M_MAM01255c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/aacoa"/>
@@ -30691,10 +30690,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01255m" sboTerm="SBO:0000247" id="MAM01255m" name="acetoacetyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C25H36N7O18P3S">
+      <species metaid="M_MAM01255m" sboTerm="SBO:0000247" id="M_MAM01255m" name="acetoacetyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C25H36N7O18P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01255m">
+            <rdf:Description rdf:about="#M_MAM01255m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/aacoa"/>
@@ -30710,10 +30709,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01255x" sboTerm="SBO:0000247" id="MAM01255x" name="acetoacetyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C25H36N7O18P3S">
+      <species metaid="M_MAM01255x" sboTerm="SBO:0000247" id="M_MAM01255x" name="acetoacetyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C25H36N7O18P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01255x">
+            <rdf:Description rdf:about="#M_MAM01255x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/aacoa"/>
@@ -30729,10 +30728,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01256c" sboTerm="SBO:0000247" id="MAM01256c" name="acetone" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H6O">
+      <species metaid="M_MAM01256c" sboTerm="SBO:0000247" id="M_MAM01256c" name="acetone" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H6O">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01256c">
+            <rdf:Description rdf:about="#M_MAM01256c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/acetone"/>
@@ -30748,10 +30747,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01256m" sboTerm="SBO:0000247" id="MAM01256m" name="acetone" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H6O">
+      <species metaid="M_MAM01256m" sboTerm="SBO:0000247" id="M_MAM01256m" name="acetone" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H6O">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01256m">
+            <rdf:Description rdf:about="#M_MAM01256m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/acetone"/>
@@ -30767,10 +30766,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01256e" sboTerm="SBO:0000247" id="MAM01256e" name="acetone" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H6O">
+      <species metaid="M_MAM01256e" sboTerm="SBO:0000247" id="M_MAM01256e" name="acetone" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H6O">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01256e">
+            <rdf:Description rdf:about="#M_MAM01256e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/acetone"/>
@@ -30786,10 +30785,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01257c" sboTerm="SBO:0000247" id="MAM01257c" name="acetyl adenylate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C12H15N5O8P">
+      <species metaid="M_MAM01257c" sboTerm="SBO:0000247" id="M_MAM01257c" name="acetyl adenylate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C12H15N5O8P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01257c">
+            <rdf:Description rdf:about="#M_MAM01257c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:37666"/>
@@ -30803,10 +30802,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01258c" sboTerm="SBO:0000247" id="MAM01258c" name="acetyl-[ACP]" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C13H23N2O8PRS">
+      <species metaid="M_MAM01258c" sboTerm="SBO:0000247" id="M_MAM01258c" name="acetyl-[ACP]" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C13H23N2O8PRS">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01258c">
+            <rdf:Description rdf:about="#M_MAM01258c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/acACP"/>
@@ -30819,10 +30818,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01259c" sboTerm="SBO:0000247" id="MAM01259c" name="acetylcarnosine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C11H15N4O4">
+      <species metaid="M_MAM01259c" sboTerm="SBO:0000247" id="M_MAM01259c" name="acetylcarnosine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C11H15N4O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01259c">
+            <rdf:Description rdf:about="#M_MAM01259c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM40087"/>
@@ -30834,10 +30833,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01260c" sboTerm="SBO:0000247" id="MAM01260c" name="acetylcholine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C7H16NO2">
+      <species metaid="M_MAM01260c" sboTerm="SBO:0000247" id="M_MAM01260c" name="acetylcholine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C7H16NO2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01260c">
+            <rdf:Description rdf:about="#M_MAM01260c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ach"/>
@@ -30853,10 +30852,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01260n" sboTerm="SBO:0000247" id="MAM01260n" name="acetylcholine" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C7H16NO2">
+      <species metaid="M_MAM01260n" sboTerm="SBO:0000247" id="M_MAM01260n" name="acetylcholine" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C7H16NO2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01260n">
+            <rdf:Description rdf:about="#M_MAM01260n">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ach"/>
@@ -30872,10 +30871,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01260e" sboTerm="SBO:0000247" id="MAM01260e" name="acetylcholine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C7H16NO2">
+      <species metaid="M_MAM01260e" sboTerm="SBO:0000247" id="M_MAM01260e" name="acetylcholine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C7H16NO2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01260e">
+            <rdf:Description rdf:about="#M_MAM01260e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ach"/>
@@ -30891,10 +30890,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01261c" sboTerm="SBO:0000247" id="MAM01261c" name="acetyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C23H34N7O17P3S">
+      <species metaid="M_MAM01261c" sboTerm="SBO:0000247" id="M_MAM01261c" name="acetyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C23H34N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01261c">
+            <rdf:Description rdf:about="#M_MAM01261c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/accoa"/>
@@ -30911,10 +30910,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01261g" sboTerm="SBO:0000247" id="MAM01261g" name="acetyl-CoA" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C23H34N7O17P3S">
+      <species metaid="M_MAM01261g" sboTerm="SBO:0000247" id="M_MAM01261g" name="acetyl-CoA" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C23H34N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01261g">
+            <rdf:Description rdf:about="#M_MAM01261g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/accoa"/>
@@ -30931,10 +30930,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01261m" sboTerm="SBO:0000247" id="MAM01261m" name="acetyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C23H34N7O17P3S">
+      <species metaid="M_MAM01261m" sboTerm="SBO:0000247" id="M_MAM01261m" name="acetyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C23H34N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01261m">
+            <rdf:Description rdf:about="#M_MAM01261m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/accoa"/>
@@ -30951,10 +30950,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01261n" sboTerm="SBO:0000247" id="MAM01261n" name="acetyl-CoA" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C23H34N7O17P3S">
+      <species metaid="M_MAM01261n" sboTerm="SBO:0000247" id="M_MAM01261n" name="acetyl-CoA" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C23H34N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01261n">
+            <rdf:Description rdf:about="#M_MAM01261n">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/accoa"/>
@@ -30971,10 +30970,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01261x" sboTerm="SBO:0000247" id="MAM01261x" name="acetyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C23H34N7O17P3S">
+      <species metaid="M_MAM01261x" sboTerm="SBO:0000247" id="M_MAM01261x" name="acetyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C23H34N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01261x">
+            <rdf:Description rdf:about="#M_MAM01261x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/accoa"/>
@@ -30991,10 +30990,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01261r" sboTerm="SBO:0000247" id="MAM01261r" name="acetyl-CoA" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C23H34N7O17P3S">
+      <species metaid="M_MAM01261r" sboTerm="SBO:0000247" id="M_MAM01261r" name="acetyl-CoA" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C23H34N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01261r">
+            <rdf:Description rdf:about="#M_MAM01261r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/accoa"/>
@@ -31011,10 +31010,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01262g" sboTerm="SBO:0000247" id="MAM01262g" name="acgalfuc12gal14acglcgalgluside heparan sulfate" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C58H102N3O31RCO">
+      <species metaid="M_MAM01262g" sboTerm="SBO:0000247" id="M_MAM01262g" name="acgalfuc12gal14acglcgalgluside heparan sulfate" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C58H102N3O31RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01262g">
+            <rdf:Description rdf:about="#M_MAM01262g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/acgalfuc12gal14acglcgalgluside_hs"/>
@@ -31026,10 +31025,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01263g" sboTerm="SBO:0000247" id="MAM01263g" name="acgalfucgalacglcgal14acglcgalgluside heparan sulfate" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C72H125N4O41RCO">
+      <species metaid="M_MAM01263g" sboTerm="SBO:0000247" id="M_MAM01263g" name="acgalfucgalacglcgal14acglcgalgluside heparan sulfate" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C72H125N4O41RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01263g">
+            <rdf:Description rdf:about="#M_MAM01263g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/acgalfucgalacglcgal14acglcgalgluside_hs"/>
@@ -31041,10 +31040,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01264g" sboTerm="SBO:0000247" id="MAM01264g" name="acngalacglcgalgluside heparan sulfate" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C56H95N3O31R">
+      <species metaid="M_MAM01264g" sboTerm="SBO:0000247" id="M_MAM01264g" name="acngalacglcgalgluside heparan sulfate" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C56H95N3O31R">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01264g">
+            <rdf:Description rdf:about="#M_MAM01264g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/acngalacglcgalgluside_hs"/>
@@ -31056,10 +31055,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01265m" sboTerm="SBO:0000247" id="MAM01265m" name="acrylyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C24H34N7O17P3S">
+      <species metaid="M_MAM01265m" sboTerm="SBO:0000247" id="M_MAM01265m" name="acrylyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C24H34N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01265m">
+            <rdf:Description rdf:about="#M_MAM01265m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/prpncoa"/>
@@ -31074,10 +31073,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01266c" sboTerm="SBO:0000247" id="MAM01266c" name="activated methyl group" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="CH3">
+      <species metaid="M_MAM01266c" sboTerm="SBO:0000247" id="M_MAM01266c" name="activated methyl group" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="CH3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01266c">
+            <rdf:Description rdf:about="#M_MAM01266c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C10905"/>
@@ -31089,10 +31088,10 @@
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       </species>
-      <species metaid="MAM01267c" sboTerm="SBO:0000247" id="MAM01267c" name="activated sulphur" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="S">
+      <species metaid="M_MAM01267c" sboTerm="SBO:0000247" id="M_MAM01267c" name="activated sulphur" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01267c">
+            <rdf:Description rdf:about="#M_MAM01267c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM166880"/>
@@ -31103,10 +31102,10 @@
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         </annotation>
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-      <species metaid="MAM01268c" sboTerm="SBO:0000247" id="MAM01268c" name="activation-ppara" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C2303H3655N619O695S34R">
+      <species metaid="M_MAM01268c" sboTerm="SBO:0000247" id="M_MAM01268c" name="activation-ppara" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C2303H3655N619O695S34R">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01268c">
+            <rdf:Description rdf:about="#M_MAM01268c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/PROTEIN"/>
@@ -31117,10 +31116,10 @@
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         </annotation>
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-      <species metaid="MAM01268m" sboTerm="SBO:0000247" id="MAM01268m" name="activation-ppara" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C2303H3655N619O695S34R">
+      <species metaid="M_MAM01268m" sboTerm="SBO:0000247" id="M_MAM01268m" name="activation-ppara" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C2303H3655N619O695S34R">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01268m">
+            <rdf:Description rdf:about="#M_MAM01268m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/PROTEIN"/>
@@ -31131,10 +31130,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01268n" sboTerm="SBO:0000247" id="MAM01268n" name="activation-ppara" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C2303H3655N619O695S34R">
+      <species metaid="M_MAM01268n" sboTerm="SBO:0000247" id="M_MAM01268n" name="activation-ppara" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C2303H3655N619O695S34R">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01268n">
+            <rdf:Description rdf:about="#M_MAM01268n">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/PROTEIN"/>
@@ -31145,10 +31144,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM01268x" sboTerm="SBO:0000247" id="MAM01268x" name="activation-ppara" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C2303H3655N619O695S34R">
+      <species metaid="M_MAM01268x" sboTerm="SBO:0000247" id="M_MAM01268x" name="activation-ppara" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C2303H3655N619O695S34R">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01268x">
+            <rdf:Description rdf:about="#M_MAM01268x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/PROTEIN"/>
@@ -31159,10 +31158,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01268r" sboTerm="SBO:0000247" id="MAM01268r" name="activation-ppara" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C2303H3655N619O695S34R">
+      <species metaid="M_MAM01268r" sboTerm="SBO:0000247" id="M_MAM01268r" name="activation-ppara" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C2303H3655N619O695S34R">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01268r">
+            <rdf:Description rdf:about="#M_MAM01268r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/PROTEIN"/>
@@ -31173,10 +31172,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM01268e" sboTerm="SBO:0000247" id="MAM01268e" name="activation-ppara" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C2303H3655N619O695S34R">
+      <species metaid="M_MAM01268e" sboTerm="SBO:0000247" id="M_MAM01268e" name="activation-ppara" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C2303H3655N619O695S34R">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01268e">
+            <rdf:Description rdf:about="#M_MAM01268e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/PROTEIN"/>
@@ -31187,10 +31186,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM01269c" sboTerm="SBO:0000247" id="MAM01269c" name="acyl-CoA-bile-PC pool" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C22H31N7O17P3SR">
+      <species metaid="M_MAM01269c" sboTerm="SBO:0000247" id="M_MAM01269c" name="acyl-CoA-bile-PC pool" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C22H31N7O17P3SR">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01269c">
+            <rdf:Description rdf:about="#M_MAM01269c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/HC02082"/>
@@ -31200,10 +31199,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM01270c" sboTerm="SBO:0000247" id="MAM01270c" name="acyl-CoA-CL pool (liver tissue)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C22H31N7O17P3SR">
+      <species metaid="M_MAM01270c" sboTerm="SBO:0000247" id="M_MAM01270c" name="acyl-CoA-CL pool (liver tissue)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C22H31N7O17P3SR">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01270c">
+            <rdf:Description rdf:about="#M_MAM01270c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/HC02089"/>
@@ -31213,10 +31212,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01271c" sboTerm="SBO:0000247" id="MAM01271c" name="acyl-CoA-LD-PC pool (liver tissue)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C22H31N7O17P3SR">
+      <species metaid="M_MAM01271c" sboTerm="SBO:0000247" id="M_MAM01271c" name="acyl-CoA-LD-PC pool (liver tissue)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C22H31N7O17P3SR">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01271c">
+            <rdf:Description rdf:about="#M_MAM01271c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/HC02044"/>
@@ -31226,10 +31225,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01272c" sboTerm="SBO:0000247" id="MAM01272c" name="acyl-CoA-LD-PE pool (liver tissue)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C22H31N7O17P3SR">
+      <species metaid="M_MAM01272c" sboTerm="SBO:0000247" id="M_MAM01272c" name="acyl-CoA-LD-PE pool (liver tissue)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C22H31N7O17P3SR">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01272c">
+            <rdf:Description rdf:about="#M_MAM01272c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM44"/>
@@ -31240,10 +31239,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM01273c" sboTerm="SBO:0000247" id="MAM01273c" name="acyl-CoA-LD-PI pool (liver tissue)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C22H31N7O17P3SR">
+      <species metaid="M_MAM01273c" sboTerm="SBO:0000247" id="M_MAM01273c" name="acyl-CoA-LD-PI pool (liver tissue)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C22H31N7O17P3SR">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01273c">
+            <rdf:Description rdf:about="#M_MAM01273c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/HC02047"/>
@@ -31253,10 +31252,10 @@
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         </annotation>
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-      <species metaid="MAM01274c" sboTerm="SBO:0000247" id="MAM01274c" name="acyl-CoA-LD-PS pool (liver tissue)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C22H31N7O17P3SR">
+      <species metaid="M_MAM01274c" sboTerm="SBO:0000247" id="M_MAM01274c" name="acyl-CoA-LD-PS pool (liver tissue)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C22H31N7O17P3SR">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01274c">
+            <rdf:Description rdf:about="#M_MAM01274c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/HC02046"/>
@@ -31266,10 +31265,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM01275c" sboTerm="SBO:0000247" id="MAM01275c" name="acyl-CoA-LD-SM pool (liver tissue)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C22H31N7O17P3SR">
+      <species metaid="M_MAM01275c" sboTerm="SBO:0000247" id="M_MAM01275c" name="acyl-CoA-LD-SM pool (liver tissue)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C22H31N7O17P3SR">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01275c">
+            <rdf:Description rdf:about="#M_MAM01275c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/HC02048"/>
@@ -31279,10 +31278,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01276c" sboTerm="SBO:0000247" id="MAM01276c" name="acyl-CoA-LD-TG2 pool (liver tissue)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C22H31N7O17P3SR">
+      <species metaid="M_MAM01276c" sboTerm="SBO:0000247" id="M_MAM01276c" name="acyl-CoA-LD-TG2 pool (liver tissue)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C22H31N7O17P3SR">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01276c">
+            <rdf:Description rdf:about="#M_MAM01276c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/HC02043"/>
@@ -31292,10 +31291,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM01277c" sboTerm="SBO:0000247" id="MAM01277c" name="acyl-CoA-LD-TG3 pool (liver tissue)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C22H31N7O17P3SR">
+      <species metaid="M_MAM01277c" sboTerm="SBO:0000247" id="M_MAM01277c" name="acyl-CoA-LD-TG3 pool (liver tissue)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C22H31N7O17P3SR">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01277c">
+            <rdf:Description rdf:about="#M_MAM01277c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/HC02061"/>
@@ -31305,10 +31304,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01278c" sboTerm="SBO:0000247" id="MAM01278c" name="acylglycerone-phosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C3H4O6PRCO">
+      <species metaid="M_MAM01278c" sboTerm="SBO:0000247" id="M_MAM01278c" name="acylglycerone-phosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C3H4O6PRCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01278c">
+            <rdf:Description rdf:about="#M_MAM01278c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/adhap_hs"/>
@@ -31322,10 +31321,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01278x" sboTerm="SBO:0000247" id="MAM01278x" name="acylglycerone-phosphate" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C3H4O6PRCO">
+      <species metaid="M_MAM01278x" sboTerm="SBO:0000247" id="M_MAM01278x" name="acylglycerone-phosphate" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C3H4O6PRCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01278x">
+            <rdf:Description rdf:about="#M_MAM01278x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/adhap_hs"/>
@@ -31339,10 +31338,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01279c" sboTerm="SBO:0000247" id="MAM01279c" name="adenine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H5N5">
+      <species metaid="M_MAM01279c" sboTerm="SBO:0000247" id="M_MAM01279c" name="adenine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H5N5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01279c">
+            <rdf:Description rdf:about="#M_MAM01279c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ade"/>
@@ -31358,10 +31357,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01279l" sboTerm="SBO:0000247" id="MAM01279l" name="adenine" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H5N5">
+      <species metaid="M_MAM01279l" sboTerm="SBO:0000247" id="M_MAM01279l" name="adenine" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H5N5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01279l">
+            <rdf:Description rdf:about="#M_MAM01279l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ade"/>
@@ -31377,10 +31376,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01279e" sboTerm="SBO:0000247" id="MAM01279e" name="adenine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H5N5">
+      <species metaid="M_MAM01279e" sboTerm="SBO:0000247" id="M_MAM01279e" name="adenine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H5N5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01279e">
+            <rdf:Description rdf:about="#M_MAM01279e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ade"/>
@@ -31396,10 +31395,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01280c" sboTerm="SBO:0000247" id="MAM01280c" name="adenosine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H13N5O4">
+      <species metaid="M_MAM01280c" sboTerm="SBO:0000247" id="M_MAM01280c" name="adenosine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H13N5O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01280c">
+            <rdf:Description rdf:about="#M_MAM01280c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/adn"/>
@@ -31415,10 +31414,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01280l" sboTerm="SBO:0000247" id="MAM01280l" name="adenosine" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H13N5O4">
+      <species metaid="M_MAM01280l" sboTerm="SBO:0000247" id="M_MAM01280l" name="adenosine" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H13N5O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01280l">
+            <rdf:Description rdf:about="#M_MAM01280l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/adn"/>
@@ -31434,10 +31433,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01280m" sboTerm="SBO:0000247" id="MAM01280m" name="adenosine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H13N5O4">
+      <species metaid="M_MAM01280m" sboTerm="SBO:0000247" id="M_MAM01280m" name="adenosine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H13N5O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01280m">
+            <rdf:Description rdf:about="#M_MAM01280m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/adn"/>
@@ -31453,10 +31452,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01280e" sboTerm="SBO:0000247" id="MAM01280e" name="adenosine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H13N5O4">
+      <species metaid="M_MAM01280e" sboTerm="SBO:0000247" id="M_MAM01280e" name="adenosine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H13N5O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01280e">
+            <rdf:Description rdf:about="#M_MAM01280e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/adn"/>
@@ -31472,10 +31471,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01281c" sboTerm="SBO:0000247" id="MAM01281c" name="adenylated molybdopterin" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C20H24N10O12P2S2">
+      <species metaid="M_MAM01281c" sboTerm="SBO:0000247" id="M_MAM01281c" name="adenylated molybdopterin" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C20H24N10O12P2S2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01281c">
+            <rdf:Description rdf:about="#M_MAM01281c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C19848"/>
@@ -31487,10 +31486,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01282c" sboTerm="SBO:0000247" id="MAM01282c" name="adenylosuccinate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C14H14N5O11P">
+      <species metaid="M_MAM01282c" sboTerm="SBO:0000247" id="M_MAM01282c" name="adenylosuccinate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C14H14N5O11P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01282c">
+            <rdf:Description rdf:about="#M_MAM01282c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dcamp"/>
@@ -31505,10 +31504,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01283c" sboTerm="SBO:0000247" id="MAM01283c" name="adenylyl sulfate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C10H12N5O10PS">
+      <species metaid="M_MAM01283c" sboTerm="SBO:0000247" id="M_MAM01283c" name="adenylyl sulfate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C10H12N5O10PS">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01283c">
+            <rdf:Description rdf:about="#M_MAM01283c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/aps"/>
@@ -31523,10 +31522,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01284c" sboTerm="SBO:0000247" id="MAM01284c" name="adenylylselenate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C10H12N5O10PSe">
+      <species metaid="M_MAM01284c" sboTerm="SBO:0000247" id="M_MAM01284c" name="adenylylselenate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C10H12N5O10PSe">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01284c">
+            <rdf:Description rdf:about="#M_MAM01284c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/adsel"/>
@@ -31540,10 +31539,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01285c" sboTerm="SBO:0000247" id="MAM01285c" name="ADP" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C10H12N5O10P2">
+      <species metaid="M_MAM01285c" sboTerm="SBO:0000247" id="M_MAM01285c" name="ADP" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C10H12N5O10P2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01285c">
+            <rdf:Description rdf:about="#M_MAM01285c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/adp"/>
@@ -31559,10 +31558,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01285g" sboTerm="SBO:0000247" id="MAM01285g" name="ADP" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C10H12N5O10P2">
+      <species metaid="M_MAM01285g" sboTerm="SBO:0000247" id="M_MAM01285g" name="ADP" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C10H12N5O10P2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01285g">
+            <rdf:Description rdf:about="#M_MAM01285g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/adp"/>
@@ -31578,10 +31577,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01285l" sboTerm="SBO:0000247" id="MAM01285l" name="ADP" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C10H12N5O10P2">
+      <species metaid="M_MAM01285l" sboTerm="SBO:0000247" id="M_MAM01285l" name="ADP" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C10H12N5O10P2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01285l">
+            <rdf:Description rdf:about="#M_MAM01285l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/adp"/>
@@ -31597,10 +31596,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01285m" sboTerm="SBO:0000247" id="MAM01285m" name="ADP" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C10H12N5O10P2">
+      <species metaid="M_MAM01285m" sboTerm="SBO:0000247" id="M_MAM01285m" name="ADP" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C10H12N5O10P2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01285m">
+            <rdf:Description rdf:about="#M_MAM01285m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/adp"/>
@@ -31616,10 +31615,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01285n" sboTerm="SBO:0000247" id="MAM01285n" name="ADP" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C10H12N5O10P2">
+      <species metaid="M_MAM01285n" sboTerm="SBO:0000247" id="M_MAM01285n" name="ADP" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C10H12N5O10P2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01285n">
+            <rdf:Description rdf:about="#M_MAM01285n">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/adp"/>
@@ -31635,10 +31634,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01285x" sboTerm="SBO:0000247" id="MAM01285x" name="ADP" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C10H12N5O10P2">
+      <species metaid="M_MAM01285x" sboTerm="SBO:0000247" id="M_MAM01285x" name="ADP" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C10H12N5O10P2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01285x">
+            <rdf:Description rdf:about="#M_MAM01285x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/adp"/>
@@ -31654,10 +31653,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01285r" sboTerm="SBO:0000247" id="MAM01285r" name="ADP" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C10H12N5O10P2">
+      <species metaid="M_MAM01285r" sboTerm="SBO:0000247" id="M_MAM01285r" name="ADP" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C10H12N5O10P2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01285r">
+            <rdf:Description rdf:about="#M_MAM01285r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/adp"/>
@@ -31673,10 +31672,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01285e" sboTerm="SBO:0000247" id="MAM01285e" name="ADP" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C10H12N5O10P2">
+      <species metaid="M_MAM01285e" sboTerm="SBO:0000247" id="M_MAM01285e" name="ADP" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C10H12N5O10P2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01285e">
+            <rdf:Description rdf:about="#M_MAM01285e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/adp"/>
@@ -31692,10 +31691,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01286c" sboTerm="SBO:0000247" id="MAM01286c" name="ADP-glucose" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C16H23N5O15P2">
+      <species metaid="M_MAM01286c" sboTerm="SBO:0000247" id="M_MAM01286c" name="ADP-glucose" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C16H23N5O15P2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01286c">
+            <rdf:Description rdf:about="#M_MAM01286c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/adpglc"/>
@@ -31711,10 +31710,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01286e" sboTerm="SBO:0000247" id="MAM01286e" name="ADP-glucose" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C16H23N5O15P2">
+      <species metaid="M_MAM01286e" sboTerm="SBO:0000247" id="M_MAM01286e" name="ADP-glucose" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C16H23N5O15P2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01286e">
+            <rdf:Description rdf:about="#M_MAM01286e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/adpglc"/>
@@ -31730,10 +31729,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01287c" sboTerm="SBO:0000247" id="MAM01287c" name="ADP-mannose" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C16H23N5O15P2">
+      <species metaid="M_MAM01287c" sboTerm="SBO:0000247" id="M_MAM01287c" name="ADP-mannose" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C16H23N5O15P2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01287c">
+            <rdf:Description rdf:about="#M_MAM01287c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/adpman"/>
@@ -31749,10 +31748,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01287e" sboTerm="SBO:0000247" id="MAM01287e" name="ADP-mannose" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C16H23N5O15P2">
+      <species metaid="M_MAM01287e" sboTerm="SBO:0000247" id="M_MAM01287e" name="ADP-mannose" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C16H23N5O15P2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01287e">
+            <rdf:Description rdf:about="#M_MAM01287e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/adpman"/>
@@ -31768,10 +31767,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01288c" sboTerm="SBO:0000247" id="MAM01288c" name="ADP-ribose" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C15H21N5O14P2">
+      <species metaid="M_MAM01288c" sboTerm="SBO:0000247" id="M_MAM01288c" name="ADP-ribose" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C15H21N5O14P2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01288c">
+            <rdf:Description rdf:about="#M_MAM01288c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/adprib"/>
@@ -31786,10 +31785,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01288e" sboTerm="SBO:0000247" id="MAM01288e" name="ADP-ribose" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C15H21N5O14P2">
+      <species metaid="M_MAM01288e" sboTerm="SBO:0000247" id="M_MAM01288e" name="ADP-ribose" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C15H21N5O14P2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01288e">
+            <rdf:Description rdf:about="#M_MAM01288e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/adprib"/>
@@ -31804,10 +31803,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01289c" sboTerm="SBO:0000247" id="MAM01289c" name="ADP-ribose-2-phosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C15H20N5O17P3">
+      <species metaid="M_MAM01289c" sboTerm="SBO:0000247" id="M_MAM01289c" name="ADP-ribose-2-phosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C15H20N5O17P3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01289c">
+            <rdf:Description rdf:about="#M_MAM01289c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/adprbp"/>
@@ -31822,10 +31821,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01289e" sboTerm="SBO:0000247" id="MAM01289e" name="ADP-ribose-2-phosphate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C15H20N5O17P3">
+      <species metaid="M_MAM01289e" sboTerm="SBO:0000247" id="M_MAM01289e" name="ADP-ribose-2-phosphate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C15H20N5O17P3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01289e">
+            <rdf:Description rdf:about="#M_MAM01289e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/adprbp"/>
@@ -31840,10 +31839,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01290c" sboTerm="SBO:0000247" id="MAM01290c" name="adrenaline" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C9H14NO3">
+      <species metaid="M_MAM01290c" sboTerm="SBO:0000247" id="M_MAM01290c" name="adrenaline" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C9H14NO3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01290c">
+            <rdf:Description rdf:about="#M_MAM01290c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/adrnl"/>
@@ -31860,10 +31859,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01290e" sboTerm="SBO:0000247" id="MAM01290e" name="adrenaline" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C9H14NO3">
+      <species metaid="M_MAM01290e" sboTerm="SBO:0000247" id="M_MAM01290e" name="adrenaline" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C9H14NO3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01290e">
+            <rdf:Description rdf:about="#M_MAM01290e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/adrnl"/>
@@ -31880,10 +31879,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01291c" sboTerm="SBO:0000247" id="MAM01291c" name="adrenic acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C22H35O2">
+      <species metaid="M_MAM01291c" sboTerm="SBO:0000247" id="M_MAM01291c" name="adrenic acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C22H35O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01291c">
+            <rdf:Description rdf:about="#M_MAM01291c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/adrn"/>
@@ -31901,10 +31900,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01291l" sboTerm="SBO:0000247" id="MAM01291l" name="adrenic acid" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C22H35O2">
+      <species metaid="M_MAM01291l" sboTerm="SBO:0000247" id="M_MAM01291l" name="adrenic acid" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C22H35O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01291l">
+            <rdf:Description rdf:about="#M_MAM01291l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/adrn"/>
@@ -31922,10 +31921,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01291r" sboTerm="SBO:0000247" id="MAM01291r" name="adrenic acid" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C22H35O2">
+      <species metaid="M_MAM01291r" sboTerm="SBO:0000247" id="M_MAM01291r" name="adrenic acid" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C22H35O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01291r">
+            <rdf:Description rdf:about="#M_MAM01291r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/adrn"/>
@@ -31943,10 +31942,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01291e" sboTerm="SBO:0000247" id="MAM01291e" name="adrenic acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C22H35O2">
+      <species metaid="M_MAM01291e" sboTerm="SBO:0000247" id="M_MAM01291e" name="adrenic acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C22H35O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01291e">
+            <rdf:Description rdf:about="#M_MAM01291e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/adrn"/>
@@ -31964,10 +31963,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01292c" sboTerm="SBO:0000247" id="MAM01292c" name="adrenochrome" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H9NO3">
+      <species metaid="M_MAM01292c" sboTerm="SBO:0000247" id="M_MAM01292c" name="adrenochrome" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H9NO3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01292c">
+            <rdf:Description rdf:about="#M_MAM01292c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM40345"/>
@@ -31980,10 +31979,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01294c" sboTerm="SBO:0000247" id="MAM01294c" name="aflatoxin B1 dialdehyde" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C17H13O8">
+      <species metaid="M_MAM01294c" sboTerm="SBO:0000247" id="M_MAM01294c" name="aflatoxin B1 dialdehyde" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C17H13O8">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01294c">
+            <rdf:Description rdf:about="#M_MAM01294c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C19589"/>
@@ -31995,10 +31994,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01295c" sboTerm="SBO:0000247" id="MAM01295c" name="aflatoxin B1 diol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C17H14O8">
+      <species metaid="M_MAM01295c" sboTerm="SBO:0000247" id="M_MAM01295c" name="aflatoxin B1 diol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C17H14O8">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01295c">
+            <rdf:Description rdf:about="#M_MAM01295c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C19588"/>
@@ -32010,10 +32009,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01296c" sboTerm="SBO:0000247" id="MAM01296c" name="aflatoxin B1" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C17H12O6">
+      <species metaid="M_MAM01296c" sboTerm="SBO:0000247" id="M_MAM01296c" name="aflatoxin B1" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C17H12O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01296c">
+            <rdf:Description rdf:about="#M_MAM01296c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/aflatoxin"/>
@@ -32028,10 +32027,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01296e" sboTerm="SBO:0000247" id="MAM01296e" name="aflatoxin B1" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C17H12O6">
+      <species metaid="M_MAM01296e" sboTerm="SBO:0000247" id="M_MAM01296e" name="aflatoxin B1" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C17H12O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01296e">
+            <rdf:Description rdf:about="#M_MAM01296e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/aflatoxin"/>
@@ -32046,10 +32045,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01297c" sboTerm="SBO:0000247" id="MAM01297c" name="aflatoxin B1-endo-8,9-epoxide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C17H12O7">
+      <species metaid="M_MAM01297c" sboTerm="SBO:0000247" id="M_MAM01297c" name="aflatoxin B1-endo-8,9-epoxide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C17H12O7">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01297c">
+            <rdf:Description rdf:about="#M_MAM01297c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C19595"/>
@@ -32061,10 +32060,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01298c" sboTerm="SBO:0000247" id="MAM01298c" name="aflatoxin B1-exo-8,9-epoxide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C17H12O7">
+      <species metaid="M_MAM01298c" sboTerm="SBO:0000247" id="M_MAM01298c" name="aflatoxin B1-exo-8,9-epoxide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C17H12O7">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01298c">
+            <rdf:Description rdf:about="#M_MAM01298c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/eaflatoxin"/>
@@ -32079,10 +32078,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01298e" sboTerm="SBO:0000247" id="MAM01298e" name="aflatoxin B1-exo-8,9-epoxide" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C17H12O7">
+      <species metaid="M_MAM01298e" sboTerm="SBO:0000247" id="M_MAM01298e" name="aflatoxin B1-exo-8,9-epoxide" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C17H12O7">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01298e">
+            <rdf:Description rdf:about="#M_MAM01298e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/eaflatoxin"/>
@@ -32097,10 +32096,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01299c" sboTerm="SBO:0000247" id="MAM01299c" name="aflatoxin B1-exo-8,9-epoxide-GSH" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H29N3O13S">
+      <species metaid="M_MAM01299c" sboTerm="SBO:0000247" id="M_MAM01299c" name="aflatoxin B1-exo-8,9-epoxide-GSH" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H29N3O13S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01299c">
+            <rdf:Description rdf:about="#M_MAM01299c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:2505"/>
@@ -32114,10 +32113,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01300c" sboTerm="SBO:0000247" id="MAM01300c" name="aflatoxin M1" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C17H12O7">
+      <species metaid="M_MAM01300c" sboTerm="SBO:0000247" id="M_MAM01300c" name="aflatoxin M1" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C17H12O7">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01300c">
+            <rdf:Description rdf:about="#M_MAM01300c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C16756"/>
@@ -32129,10 +32128,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01301c" sboTerm="SBO:0000247" id="MAM01301c" name="aflatoxin M1-8,9-epoxide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C17H12O8">
+      <species metaid="M_MAM01301c" sboTerm="SBO:0000247" id="M_MAM01301c" name="aflatoxin M1-8,9-epoxide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C17H12O8">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01301c">
+            <rdf:Description rdf:about="#M_MAM01301c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C19594"/>
@@ -32144,10 +32143,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01302c" sboTerm="SBO:0000247" id="MAM01302c" name="aflatoxin Q1" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C17H12O7">
+      <species metaid="M_MAM01302c" sboTerm="SBO:0000247" id="M_MAM01302c" name="aflatoxin Q1" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C17H12O7">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01302c">
+            <rdf:Description rdf:about="#M_MAM01302c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C19585"/>
@@ -32159,10 +32158,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01303c" sboTerm="SBO:0000247" id="MAM01303c" name="agmatine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="C5H16N4">
+      <species metaid="M_MAM01303c" sboTerm="SBO:0000247" id="M_MAM01303c" name="agmatine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="C5H16N4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01303c">
+            <rdf:Description rdf:about="#M_MAM01303c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/agm"/>
@@ -32178,10 +32177,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01303m" sboTerm="SBO:0000247" id="MAM01303m" name="agmatine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="C5H16N4">
+      <species metaid="M_MAM01303m" sboTerm="SBO:0000247" id="M_MAM01303m" name="agmatine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="C5H16N4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01303m">
+            <rdf:Description rdf:about="#M_MAM01303m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/agm"/>
@@ -32197,10 +32196,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01303e" sboTerm="SBO:0000247" id="MAM01303e" name="agmatine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="C5H16N4">
+      <species metaid="M_MAM01303e" sboTerm="SBO:0000247" id="M_MAM01303e" name="agmatine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="C5H16N4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01303e">
+            <rdf:Description rdf:about="#M_MAM01303e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/agm"/>
@@ -32216,10 +32215,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01304c" sboTerm="SBO:0000247" id="MAM01304c" name="AICAR" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C9H13N4O8P">
+      <species metaid="M_MAM01304c" sboTerm="SBO:0000247" id="M_MAM01304c" name="AICAR" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C9H13N4O8P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01304c">
+            <rdf:Description rdf:about="#M_MAM01304c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/aicar"/>
@@ -32234,10 +32233,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01305c" sboTerm="SBO:0000247" id="MAM01305c" name="AIR" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C8H12N3O7P">
+      <species metaid="M_MAM01305c" sboTerm="SBO:0000247" id="M_MAM01305c" name="AIR" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C8H12N3O7P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01305c">
+            <rdf:Description rdf:about="#M_MAM01305c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/air"/>
@@ -32253,10 +32252,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01306c" sboTerm="SBO:0000247" id="MAM01306c" name="AKG" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C5H4O5">
+      <species metaid="M_MAM01306c" sboTerm="SBO:0000247" id="M_MAM01306c" name="AKG" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C5H4O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01306c">
+            <rdf:Description rdf:about="#M_MAM01306c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/akg"/>
@@ -32272,10 +32271,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM01306m" sboTerm="SBO:0000247" id="MAM01306m" name="AKG" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C5H4O5">
+      <species metaid="M_MAM01306m" sboTerm="SBO:0000247" id="M_MAM01306m" name="AKG" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C5H4O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01306m">
+            <rdf:Description rdf:about="#M_MAM01306m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/akg"/>
@@ -32291,10 +32290,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01306x" sboTerm="SBO:0000247" id="MAM01306x" name="AKG" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C5H4O5">
+      <species metaid="M_MAM01306x" sboTerm="SBO:0000247" id="M_MAM01306x" name="AKG" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C5H4O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01306x">
+            <rdf:Description rdf:about="#M_MAM01306x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/akg"/>
@@ -32310,10 +32309,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01306e" sboTerm="SBO:0000247" id="MAM01306e" name="AKG" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C5H4O5">
+      <species metaid="M_MAM01306e" sboTerm="SBO:0000247" id="M_MAM01306e" name="AKG" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C5H4O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01306e">
+            <rdf:Description rdf:about="#M_MAM01306e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/akg"/>
@@ -32329,10 +32328,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01307c" sboTerm="SBO:0000247" id="MAM01307c" name="alanine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H7NO2">
+      <species metaid="M_MAM01307c" sboTerm="SBO:0000247" id="M_MAM01307c" name="alanine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H7NO2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01307c">
+            <rdf:Description rdf:about="#M_MAM01307c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ala__L"/>
@@ -32348,10 +32347,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01307l" sboTerm="SBO:0000247" id="MAM01307l" name="alanine" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H7NO2">
+      <species metaid="M_MAM01307l" sboTerm="SBO:0000247" id="M_MAM01307l" name="alanine" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H7NO2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01307l">
+            <rdf:Description rdf:about="#M_MAM01307l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ala__L"/>
@@ -32367,10 +32366,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01307m" sboTerm="SBO:0000247" id="MAM01307m" name="alanine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H7NO2">
+      <species metaid="M_MAM01307m" sboTerm="SBO:0000247" id="M_MAM01307m" name="alanine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H7NO2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01307m">
+            <rdf:Description rdf:about="#M_MAM01307m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ala__L"/>
@@ -32386,10 +32385,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01307x" sboTerm="SBO:0000247" id="MAM01307x" name="alanine" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H7NO2">
+      <species metaid="M_MAM01307x" sboTerm="SBO:0000247" id="M_MAM01307x" name="alanine" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H7NO2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01307x">
+            <rdf:Description rdf:about="#M_MAM01307x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ala__L"/>
@@ -32405,10 +32404,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01307e" sboTerm="SBO:0000247" id="MAM01307e" name="alanine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H7NO2">
+      <species metaid="M_MAM01307e" sboTerm="SBO:0000247" id="M_MAM01307e" name="alanine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H7NO2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01307e">
+            <rdf:Description rdf:about="#M_MAM01307e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ala__L"/>
@@ -32424,10 +32423,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01308c" sboTerm="SBO:0000247" id="MAM01308c" name="albumin" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C3076H4833N821O919S42">
+      <species metaid="M_MAM01308c" sboTerm="SBO:0000247" id="M_MAM01308c" name="albumin" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C3076H4833N821O919S42">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01308c">
+            <rdf:Description rdf:about="#M_MAM01308c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/PROTEIN"/>
@@ -32438,10 +32437,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01308l" sboTerm="SBO:0000247" id="MAM01308l" name="albumin" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C3076H4833N821O919S42">
+      <species metaid="M_MAM01308l" sboTerm="SBO:0000247" id="M_MAM01308l" name="albumin" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C3076H4833N821O919S42">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01308l">
+            <rdf:Description rdf:about="#M_MAM01308l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/PROTEIN"/>
@@ -32452,10 +32451,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01308e" sboTerm="SBO:0000247" id="MAM01308e" name="albumin" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C3076H4833N821O919S42">
+      <species metaid="M_MAM01308e" sboTerm="SBO:0000247" id="M_MAM01308e" name="albumin" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C3076H4833N821O919S42">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01308e">
+            <rdf:Description rdf:about="#M_MAM01308e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/PROTEIN"/>
@@ -32466,10 +32465,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01309c" sboTerm="SBO:0000247" id="MAM01309c" name="aldosterone" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H28O5">
+      <species metaid="M_MAM01309c" sboTerm="SBO:0000247" id="M_MAM01309c" name="aldosterone" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H28O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01309c">
+            <rdf:Description rdf:about="#M_MAM01309c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/aldstrn"/>
@@ -32487,10 +32486,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01309m" sboTerm="SBO:0000247" id="MAM01309m" name="aldosterone" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H28O5">
+      <species metaid="M_MAM01309m" sboTerm="SBO:0000247" id="M_MAM01309m" name="aldosterone" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H28O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01309m">
+            <rdf:Description rdf:about="#M_MAM01309m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/aldstrn"/>
@@ -32508,10 +32507,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01309e" sboTerm="SBO:0000247" id="MAM01309e" name="aldosterone" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H28O5">
+      <species metaid="M_MAM01309e" sboTerm="SBO:0000247" id="M_MAM01309e" name="aldosterone" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H28O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01309e">
+            <rdf:Description rdf:about="#M_MAM01309e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/aldstrn"/>
@@ -32529,10 +32528,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01310c" sboTerm="SBO:0000247" id="MAM01310c" name="alkylamine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="H3NR">
+      <species metaid="M_MAM01310c" sboTerm="SBO:0000247" id="M_MAM01310c" name="alkylamine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="H3NR">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01310c">
+            <rdf:Description rdf:about="#M_MAM01310c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C01664"/>
@@ -32544,10 +32543,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01311c" sboTerm="SBO:0000247" id="MAM01311c" name="alkyl-glycerone-3-phosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C3H4O6PR">
+      <species metaid="M_MAM01311c" sboTerm="SBO:0000247" id="M_MAM01311c" name="alkyl-glycerone-3-phosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C3H4O6PR">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01311c">
+            <rdf:Description rdf:about="#M_MAM01311c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/akgp_hs"/>
@@ -32561,10 +32560,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01311x" sboTerm="SBO:0000247" id="MAM01311x" name="alkyl-glycerone-3-phosphate" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C3H4O6PR">
+      <species metaid="M_MAM01311x" sboTerm="SBO:0000247" id="M_MAM01311x" name="alkyl-glycerone-3-phosphate" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C3H4O6PR">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01311x">
+            <rdf:Description rdf:about="#M_MAM01311x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/akgp_hs"/>
@@ -32578,10 +32577,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01312c" sboTerm="SBO:0000247" id="MAM01312c" name="allantoate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C4H7N4O4">
+      <species metaid="M_MAM01312c" sboTerm="SBO:0000247" id="M_MAM01312c" name="allantoate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C4H7N4O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01312c">
+            <rdf:Description rdf:about="#M_MAM01312c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:30837"/>
@@ -32596,10 +32595,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01313c" sboTerm="SBO:0000247" id="MAM01313c" name="allantoin" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H6N4O3">
+      <species metaid="M_MAM01313c" sboTerm="SBO:0000247" id="M_MAM01313c" name="allantoin" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H6N4O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01313c">
+            <rdf:Description rdf:about="#M_MAM01313c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:15676"/>
@@ -32615,10 +32614,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01314c" sboTerm="SBO:0000247" id="MAM01314c" name="allopregnanolone" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H34O2">
+      <species metaid="M_MAM01314c" sboTerm="SBO:0000247" id="M_MAM01314c" name="allopregnanolone" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H34O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01314c">
+            <rdf:Description rdf:about="#M_MAM01314c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:50169"/>
@@ -32635,10 +32634,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01315c" sboTerm="SBO:0000247" id="MAM01315c" name="alloxan" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C4N2O4">
+      <species metaid="M_MAM01315c" sboTerm="SBO:0000247" id="M_MAM01315c" name="alloxan" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C4N2O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01315c">
+            <rdf:Description rdf:about="#M_MAM01315c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:730073"/>
@@ -32653,10 +32652,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01315e" sboTerm="SBO:0000247" id="MAM01315e" name="alloxan" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C4N2O4">
+      <species metaid="M_MAM01315e" sboTerm="SBO:0000247" id="M_MAM01315e" name="alloxan" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C4N2O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01315e">
+            <rdf:Description rdf:about="#M_MAM01315e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:730073"/>
@@ -32671,10 +32670,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01316c" sboTerm="SBO:0000247" id="MAM01316c" name="all-trans-decaprenyl-diphosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C50H81O7P2">
+      <species metaid="M_MAM01316c" sboTerm="SBO:0000247" id="M_MAM01316c" name="all-trans-decaprenyl-diphosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C50H81O7P2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01316c">
+            <rdf:Description rdf:about="#M_MAM01316c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/decdp"/>
@@ -32686,10 +32685,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01316m" sboTerm="SBO:0000247" id="MAM01316m" name="all-trans-decaprenyl-diphosphate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C50H81O7P2">
+      <species metaid="M_MAM01316m" sboTerm="SBO:0000247" id="M_MAM01316m" name="all-trans-decaprenyl-diphosphate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C50H81O7P2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01316m">
+            <rdf:Description rdf:about="#M_MAM01316m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/decdp"/>
@@ -32701,10 +32700,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01317c" sboTerm="SBO:0000247" id="MAM01317c" name="alpha tubulin" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C13H15N3O5R2">
+      <species metaid="M_MAM01317c" sboTerm="SBO:0000247" id="M_MAM01317c" name="alpha tubulin" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C13H15N3O5R2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01317c">
+            <rdf:Description rdf:about="#M_MAM01317c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C01392"/>
@@ -32716,10 +32715,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01319c" sboTerm="SBO:0000247" id="MAM01319c" name="alpha-[3-(nitrosoamino)propyl]-3-pyridinemethanol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H13N3O2">
+      <species metaid="M_MAM01319c" sboTerm="SBO:0000247" id="M_MAM01319c" name="alpha-[3-(nitrosoamino)propyl]-3-pyridinemethanol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H13N3O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01319c">
+            <rdf:Description rdf:about="#M_MAM01319c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C19581"/>
@@ -32731,10 +32730,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01320c" sboTerm="SBO:0000247" id="MAM01320c" name="alpha-[3-[(hydroxymethyl)nitrosoamino]propyl]-3-pyridinemethanol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H15N3O3">
+      <species metaid="M_MAM01320c" sboTerm="SBO:0000247" id="M_MAM01320c" name="alpha-[3-[(hydroxymethyl)nitrosoamino]propyl]-3-pyridinemethanol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H15N3O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01320c">
+            <rdf:Description rdf:about="#M_MAM01320c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C19580"/>
@@ -32746,10 +32745,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01321c" sboTerm="SBO:0000247" id="MAM01321c" name="alpha-CEHC-glucuronide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C22H29O10">
+      <species metaid="M_MAM01321c" sboTerm="SBO:0000247" id="M_MAM01321c" name="alpha-CEHC-glucuronide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C22H29O10">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01321c">
+            <rdf:Description rdf:about="#M_MAM01321c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM15963"/>
@@ -32760,10 +32759,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01322c" sboTerm="SBO:0000247" id="MAM01322c" name="alpha-D-galactose-1-phosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H11O9P">
+      <species metaid="M_MAM01322c" sboTerm="SBO:0000247" id="M_MAM01322c" name="alpha-D-galactose-1-phosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H11O9P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01322c">
+            <rdf:Description rdf:about="#M_MAM01322c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/gal1p"/>
@@ -32778,10 +32777,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01323c" sboTerm="SBO:0000247" id="MAM01323c" name="alpha-D-mannosyl-beta-D-mannosyl-diacetylchitobiosyldiphosphodolichol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C128H210N2O27P2">
+      <species metaid="M_MAM01323c" sboTerm="SBO:0000247" id="M_MAM01323c" name="alpha-D-mannosyl-beta-D-mannosyl-diacetylchitobiosyldiphosphodolichol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C128H210N2O27P2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01323c">
+            <rdf:Description rdf:about="#M_MAM01323c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/m1mpdol__L"/>
@@ -32795,10 +32794,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01324c" sboTerm="SBO:0000247" id="MAM01324c" name="alpha-GalNAc-globoside" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C52H92N3O27RCO">
+      <species metaid="M_MAM01324c" sboTerm="SBO:0000247" id="M_MAM01324c" name="alpha-GalNAc-globoside" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C52H92N3O27RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01324c">
+            <rdf:Description rdf:about="#M_MAM01324c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/acgagbside_hs"/>
@@ -32810,10 +32809,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01324g" sboTerm="SBO:0000247" id="MAM01324g" name="alpha-GalNAc-globoside" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C52H92N3O27RCO">
+      <species metaid="M_MAM01324g" sboTerm="SBO:0000247" id="M_MAM01324g" name="alpha-GalNAc-globoside" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C52H92N3O27RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01324g">
+            <rdf:Description rdf:about="#M_MAM01324g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/acgagbside_hs"/>
@@ -32825,10 +32824,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01324l" sboTerm="SBO:0000247" id="MAM01324l" name="alpha-GalNAc-globoside" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C52H92N3O27RCO">
+      <species metaid="M_MAM01324l" sboTerm="SBO:0000247" id="M_MAM01324l" name="alpha-GalNAc-globoside" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C52H92N3O27RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01324l">
+            <rdf:Description rdf:about="#M_MAM01324l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/acgagbside_hs"/>
@@ -32840,10 +32839,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01325c" sboTerm="SBO:0000247" id="MAM01325c" name="alpha-hydroxyisocaproic acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H11O3">
+      <species metaid="M_MAM01325c" sboTerm="SBO:0000247" id="M_MAM01325c" name="alpha-hydroxyisocaproic acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H11O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01325c">
+            <rdf:Description rdf:about="#M_MAM01325c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM30866"/>
@@ -32855,10 +32854,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM01326c" sboTerm="SBO:0000247" id="MAM01326c" name="alpha-pinene-oxide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H16O">
+      <species metaid="M_MAM01326c" sboTerm="SBO:0000247" id="M_MAM01326c" name="alpha-pinene-oxide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H16O">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01326c">
+            <rdf:Description rdf:about="#M_MAM01326c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/apnnox"/>
@@ -32874,10 +32873,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01326e" sboTerm="SBO:0000247" id="MAM01326e" name="alpha-pinene-oxide" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H16O">
+      <species metaid="M_MAM01326e" sboTerm="SBO:0000247" id="M_MAM01326e" name="alpha-pinene-oxide" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H16O">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01326e">
+            <rdf:Description rdf:about="#M_MAM01326e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/apnnox"/>
@@ -32893,10 +32892,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM01327c" sboTerm="SBO:0000247" id="MAM01327c" name="alpha-tocopherol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C29H50O2">
+      <species metaid="M_MAM01327c" sboTerm="SBO:0000247" id="M_MAM01327c" name="alpha-tocopherol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C29H50O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01327c">
+            <rdf:Description rdf:about="#M_MAM01327c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/avite1"/>
@@ -32913,10 +32912,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM01327r" sboTerm="SBO:0000247" id="MAM01327r" name="alpha-tocopherol" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C29H50O2">
+      <species metaid="M_MAM01327r" sboTerm="SBO:0000247" id="M_MAM01327r" name="alpha-tocopherol" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C29H50O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01327r">
+            <rdf:Description rdf:about="#M_MAM01327r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/avite1"/>
@@ -32933,10 +32932,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01327e" sboTerm="SBO:0000247" id="MAM01327e" name="alpha-tocopherol" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C29H50O2">
+      <species metaid="M_MAM01327e" sboTerm="SBO:0000247" id="M_MAM01327e" name="alpha-tocopherol" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C29H50O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01327e">
+            <rdf:Description rdf:about="#M_MAM01327e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/avite1"/>
@@ -32953,10 +32952,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01328c" sboTerm="SBO:0000247" id="MAM01328c" name="alpha-tocopheryl hydroquinone" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C29H52O3">
+      <species metaid="M_MAM01328c" sboTerm="SBO:0000247" id="M_MAM01328c" name="alpha-tocopheryl hydroquinone" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C29H52O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01328c">
+            <rdf:Description rdf:about="#M_MAM01328c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM166990"/>
@@ -32967,10 +32966,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01329c" sboTerm="SBO:0000247" id="MAM01329c" name="alpha-tocopheryl quinone" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C29H50O3">
+      <species metaid="M_MAM01329c" sboTerm="SBO:0000247" id="M_MAM01329c" name="alpha-tocopheryl quinone" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C29H50O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01329c">
+            <rdf:Description rdf:about="#M_MAM01329c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM164520"/>
@@ -32982,10 +32981,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01330c" sboTerm="SBO:0000247" id="MAM01330c" name="alpha-tocotrienol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C29H44O2">
+      <species metaid="M_MAM01330c" sboTerm="SBO:0000247" id="M_MAM01330c" name="alpha-tocotrienol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C29H44O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01330c">
+            <rdf:Description rdf:about="#M_MAM01330c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/avite2"/>
@@ -33002,10 +33001,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01330r" sboTerm="SBO:0000247" id="MAM01330r" name="alpha-tocotrienol" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C29H44O2">
+      <species metaid="M_MAM01330r" sboTerm="SBO:0000247" id="M_MAM01330r" name="alpha-tocotrienol" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C29H44O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01330r">
+            <rdf:Description rdf:about="#M_MAM01330r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/avite2"/>
@@ -33022,10 +33021,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01330e" sboTerm="SBO:0000247" id="MAM01330e" name="alpha-tocotrienol" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C29H44O2">
+      <species metaid="M_MAM01330e" sboTerm="SBO:0000247" id="M_MAM01330e" name="alpha-tocotrienol" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C29H44O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01330e">
+            <rdf:Description rdf:about="#M_MAM01330e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/avite2"/>
@@ -33042,10 +33041,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01331c" sboTerm="SBO:0000247" id="MAM01331c" name="alpha-tocotrienoxyl radical" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C29H43O2">
+      <species metaid="M_MAM01331c" sboTerm="SBO:0000247" id="M_MAM01331c" name="alpha-tocotrienoxyl radical" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C29H43O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01331c">
+            <rdf:Description rdf:about="#M_MAM01331c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM152137"/>
@@ -33056,10 +33055,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01332c" sboTerm="SBO:0000247" id="MAM01332c" name="aminoacetone" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C3H8NO">
+      <species metaid="M_MAM01332c" sboTerm="SBO:0000247" id="M_MAM01332c" name="aminoacetone" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C3H8NO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01332c">
+            <rdf:Description rdf:about="#M_MAM01332c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/aact"/>
@@ -33073,10 +33072,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01332m" sboTerm="SBO:0000247" id="MAM01332m" name="aminoacetone" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C3H8NO">
+      <species metaid="M_MAM01332m" sboTerm="SBO:0000247" id="M_MAM01332m" name="aminoacetone" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C3H8NO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01332m">
+            <rdf:Description rdf:about="#M_MAM01332m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/aact"/>
@@ -33090,10 +33089,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01334c" sboTerm="SBO:0000247" id="MAM01334c" name="AMP" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C10H12N5O7P">
+      <species metaid="M_MAM01334c" sboTerm="SBO:0000247" id="M_MAM01334c" name="AMP" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C10H12N5O7P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01334c">
+            <rdf:Description rdf:about="#M_MAM01334c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/amp"/>
@@ -33109,10 +33108,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01334g" sboTerm="SBO:0000247" id="MAM01334g" name="AMP" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C10H12N5O7P">
+      <species metaid="M_MAM01334g" sboTerm="SBO:0000247" id="M_MAM01334g" name="AMP" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C10H12N5O7P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01334g">
+            <rdf:Description rdf:about="#M_MAM01334g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/amp"/>
@@ -33128,10 +33127,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01334l" sboTerm="SBO:0000247" id="MAM01334l" name="AMP" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C10H12N5O7P">
+      <species metaid="M_MAM01334l" sboTerm="SBO:0000247" id="M_MAM01334l" name="AMP" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C10H12N5O7P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01334l">
+            <rdf:Description rdf:about="#M_MAM01334l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/amp"/>
@@ -33147,10 +33146,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01334m" sboTerm="SBO:0000247" id="MAM01334m" name="AMP" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C10H12N5O7P">
+      <species metaid="M_MAM01334m" sboTerm="SBO:0000247" id="M_MAM01334m" name="AMP" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C10H12N5O7P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01334m">
+            <rdf:Description rdf:about="#M_MAM01334m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/amp"/>
@@ -33166,10 +33165,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01334n" sboTerm="SBO:0000247" id="MAM01334n" name="AMP" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C10H12N5O7P">
+      <species metaid="M_MAM01334n" sboTerm="SBO:0000247" id="M_MAM01334n" name="AMP" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C10H12N5O7P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01334n">
+            <rdf:Description rdf:about="#M_MAM01334n">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/amp"/>
@@ -33185,10 +33184,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01334x" sboTerm="SBO:0000247" id="MAM01334x" name="AMP" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C10H12N5O7P">
+      <species metaid="M_MAM01334x" sboTerm="SBO:0000247" id="M_MAM01334x" name="AMP" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C10H12N5O7P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01334x">
+            <rdf:Description rdf:about="#M_MAM01334x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/amp"/>
@@ -33204,10 +33203,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01334r" sboTerm="SBO:0000247" id="MAM01334r" name="AMP" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C10H12N5O7P">
+      <species metaid="M_MAM01334r" sboTerm="SBO:0000247" id="M_MAM01334r" name="AMP" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C10H12N5O7P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01334r">
+            <rdf:Description rdf:about="#M_MAM01334r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/amp"/>
@@ -33223,10 +33222,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01334e" sboTerm="SBO:0000247" id="MAM01334e" name="AMP" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C10H12N5O7P">
+      <species metaid="M_MAM01334e" sboTerm="SBO:0000247" id="M_MAM01334e" name="AMP" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C10H12N5O7P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01334e">
+            <rdf:Description rdf:about="#M_MAM01334e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/amp"/>
@@ -33242,10 +33241,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01335c" sboTerm="SBO:0000247" id="MAM01335c" name="anandamide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C22H37NO2">
+      <species metaid="M_MAM01335c" sboTerm="SBO:0000247" id="M_MAM01335c" name="anandamide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C22H37NO2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01335c">
+            <rdf:Description rdf:about="#M_MAM01335c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:2700"/>
@@ -33262,10 +33261,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01336c" sboTerm="SBO:0000247" id="MAM01336c" name="androstenediol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H30O2">
+      <species metaid="M_MAM01336c" sboTerm="SBO:0000247" id="M_MAM01336c" name="androstenediol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H30O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01336c">
+            <rdf:Description rdf:about="#M_MAM01336c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:2710"/>
@@ -33282,10 +33281,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01336r" sboTerm="SBO:0000247" id="MAM01336r" name="androstenediol" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H30O2">
+      <species metaid="M_MAM01336r" sboTerm="SBO:0000247" id="M_MAM01336r" name="androstenediol" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H30O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01336r">
+            <rdf:Description rdf:about="#M_MAM01336r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:2710"/>
@@ -33302,10 +33301,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01337c" sboTerm="SBO:0000247" id="MAM01337c" name="androsterone sulfate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C19H29O5S">
+      <species metaid="M_MAM01337c" sboTerm="SBO:0000247" id="M_MAM01337c" name="androsterone sulfate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C19H29O5S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01337c">
+            <rdf:Description rdf:about="#M_MAM01337c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM42074"/>
@@ -33317,10 +33316,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01338c" sboTerm="SBO:0000247" id="MAM01338c" name="androsterone" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H30O2">
+      <species metaid="M_MAM01338c" sboTerm="SBO:0000247" id="M_MAM01338c" name="androsterone" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H30O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01338c">
+            <rdf:Description rdf:about="#M_MAM01338c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/andrstrn"/>
@@ -33339,10 +33338,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01338r" sboTerm="SBO:0000247" id="MAM01338r" name="androsterone" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H30O2">
+      <species metaid="M_MAM01338r" sboTerm="SBO:0000247" id="M_MAM01338r" name="androsterone" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H30O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01338r">
+            <rdf:Description rdf:about="#M_MAM01338r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/andrstrn"/>
@@ -33361,10 +33360,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01338e" sboTerm="SBO:0000247" id="MAM01338e" name="androsterone" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H30O2">
+      <species metaid="M_MAM01338e" sboTerm="SBO:0000247" id="M_MAM01338e" name="androsterone" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H30O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01338e">
+            <rdf:Description rdf:about="#M_MAM01338e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/andrstrn"/>
@@ -33383,10 +33382,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01339c" sboTerm="SBO:0000247" id="MAM01339c" name="androsterone-glucuronide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H38O8">
+      <species metaid="M_MAM01339c" sboTerm="SBO:0000247" id="M_MAM01339c" name="androsterone-glucuronide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H38O8">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01339c">
+            <rdf:Description rdf:about="#M_MAM01339c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/andrstrnglc"/>
@@ -33402,10 +33401,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01339r" sboTerm="SBO:0000247" id="MAM01339r" name="androsterone-glucuronide" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H38O8">
+      <species metaid="M_MAM01339r" sboTerm="SBO:0000247" id="M_MAM01339r" name="androsterone-glucuronide" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H38O8">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01339r">
+            <rdf:Description rdf:about="#M_MAM01339r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/andrstrnglc"/>
@@ -33421,10 +33420,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01339e" sboTerm="SBO:0000247" id="MAM01339e" name="androsterone-glucuronide" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H38O8">
+      <species metaid="M_MAM01339e" sboTerm="SBO:0000247" id="M_MAM01339e" name="androsterone-glucuronide" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H38O8">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01339e">
+            <rdf:Description rdf:about="#M_MAM01339e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/andrstrnglc"/>
@@ -33440,10 +33439,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01340c" sboTerm="SBO:0000247" id="MAM01340c" name="anhydroretinol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H28">
+      <species metaid="M_MAM01340c" sboTerm="SBO:0000247" id="M_MAM01340c" name="anhydroretinol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H28">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01340c">
+            <rdf:Description rdf:about="#M_MAM01340c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM42129"/>
@@ -33455,10 +33454,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01342c" sboTerm="SBO:0000247" id="MAM01342c" name="anthranilate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C7H6NO2">
+      <species metaid="M_MAM01342c" sboTerm="SBO:0000247" id="M_MAM01342c" name="anthranilate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C7H6NO2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01342c">
+            <rdf:Description rdf:about="#M_MAM01342c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/anth"/>
@@ -33474,10 +33473,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01343c" sboTerm="SBO:0000247" id="MAM01343c" name="antichymotrypsin" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C2144H3392N554O636S17">
+      <species metaid="M_MAM01343c" sboTerm="SBO:0000247" id="M_MAM01343c" name="antichymotrypsin" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C2144H3392N554O636S17">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01343c">
+            <rdf:Description rdf:about="#M_MAM01343c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/PROTEIN"/>
@@ -33488,10 +33487,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01343l" sboTerm="SBO:0000247" id="MAM01343l" name="antichymotrypsin" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C2144H3392N554O636S17">
+      <species metaid="M_MAM01343l" sboTerm="SBO:0000247" id="M_MAM01343l" name="antichymotrypsin" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C2144H3392N554O636S17">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01343l">
+            <rdf:Description rdf:about="#M_MAM01343l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/PROTEIN"/>
@@ -33502,10 +33501,10 @@
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         </annotation>
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-      <species metaid="MAM01343e" sboTerm="SBO:0000247" id="MAM01343e" name="antichymotrypsin" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C2144H3392N554O636S17">
+      <species metaid="M_MAM01343e" sboTerm="SBO:0000247" id="M_MAM01343e" name="antichymotrypsin" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C2144H3392N554O636S17">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01343e">
+            <rdf:Description rdf:about="#M_MAM01343e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/PROTEIN"/>
@@ -33516,10 +33515,10 @@
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-      <species metaid="MAM01344c" sboTerm="SBO:0000247" id="MAM01344c" name="antipyrine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C11H12N2O">
+      <species metaid="M_MAM01344c" sboTerm="SBO:0000247" id="M_MAM01344c" name="antipyrine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C11H12N2O">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01344c">
+            <rdf:Description rdf:about="#M_MAM01344c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/antipyrene"/>
@@ -33534,10 +33533,10 @@
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         </annotation>
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-      <species metaid="MAM01344e" sboTerm="SBO:0000247" id="MAM01344e" name="antipyrine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C11H12N2O">
+      <species metaid="M_MAM01344e" sboTerm="SBO:0000247" id="M_MAM01344e" name="antipyrine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C11H12N2O">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01344e">
+            <rdf:Description rdf:about="#M_MAM01344e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/antipyrene"/>
@@ -33552,10 +33551,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM01345c" sboTerm="SBO:0000247" id="MAM01345c" name="antitrypsin" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C2112H3313N539O629S13">
+      <species metaid="M_MAM01345c" sboTerm="SBO:0000247" id="M_MAM01345c" name="antitrypsin" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C2112H3313N539O629S13">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01345c">
+            <rdf:Description rdf:about="#M_MAM01345c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/PROTEIN"/>
@@ -33566,10 +33565,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM01345l" sboTerm="SBO:0000247" id="MAM01345l" name="antitrypsin" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C2112H3313N539O629S13">
+      <species metaid="M_MAM01345l" sboTerm="SBO:0000247" id="M_MAM01345l" name="antitrypsin" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C2112H3313N539O629S13">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01345l">
+            <rdf:Description rdf:about="#M_MAM01345l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/PROTEIN"/>
@@ -33580,10 +33579,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01345e" sboTerm="SBO:0000247" id="MAM01345e" name="antitrypsin" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C2112H3313N539O629S13">
+      <species metaid="M_MAM01345e" sboTerm="SBO:0000247" id="M_MAM01345e" name="antitrypsin" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C2112H3313N539O629S13">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01345e">
+            <rdf:Description rdf:about="#M_MAM01345e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/PROTEIN"/>
@@ -33594,10 +33593,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01346c" sboTerm="SBO:0000247" id="MAM01346c" name="APE" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C27H37NO8PR2">
+      <species metaid="M_MAM01346c" sboTerm="SBO:0000247" id="M_MAM01346c" name="APE" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C27H37NO8PR2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01346c">
+            <rdf:Description rdf:about="#M_MAM01346c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/CE6583"/>
@@ -33607,10 +33606,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01347c" sboTerm="SBO:0000247" id="MAM01347c" name="apelin-(1-12)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="3" fbc:chemicalFormula="C60H105N22O15S">
+      <species metaid="M_MAM01347c" sboTerm="SBO:0000247" id="M_MAM01347c" name="apelin-(1-12)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="3" fbc:chemicalFormula="C60H105N22O15S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01347c">
+            <rdf:Description rdf:about="#M_MAM01347c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM152293"/>
@@ -33621,10 +33620,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01348c" sboTerm="SBO:0000247" id="MAM01348c" name="apelin-13" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="3" fbc:chemicalFormula="C69H114N23O16S">
+      <species metaid="M_MAM01348c" sboTerm="SBO:0000247" id="M_MAM01348c" name="apelin-13" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="3" fbc:chemicalFormula="C69H114N23O16S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01348c">
+            <rdf:Description rdf:about="#M_MAM01348c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM42305"/>
@@ -33636,10 +33635,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01349c" sboTerm="SBO:0000247" id="MAM01349c" name="apo-[ACP]" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="HOR">
+      <species metaid="M_MAM01349c" sboTerm="SBO:0000247" id="M_MAM01349c" name="apo-[ACP]" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="HOR">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01349c">
+            <rdf:Description rdf:about="#M_MAM01349c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C03688"/>
@@ -33652,10 +33651,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01350c" sboTerm="SBO:0000247" id="MAM01350c" name="apoA1" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C1367H2173N381O419S4">
+      <species metaid="M_MAM01350c" sboTerm="SBO:0000247" id="M_MAM01350c" name="apoA1" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C1367H2173N381O419S4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01350c">
+            <rdf:Description rdf:about="#M_MAM01350c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/PROTEIN"/>
@@ -33667,10 +33666,10 @@
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         </annotation>
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-      <species metaid="MAM01350l" sboTerm="SBO:0000247" id="MAM01350l" name="apoA1" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C1367H2173N381O419S4">
+      <species metaid="M_MAM01350l" sboTerm="SBO:0000247" id="M_MAM01350l" name="apoA1" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C1367H2173N381O419S4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01350l">
+            <rdf:Description rdf:about="#M_MAM01350l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/PROTEIN"/>
@@ -33682,10 +33681,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01350r" sboTerm="SBO:0000247" id="MAM01350r" name="apoA1" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C1367H2173N381O419S4">
+      <species metaid="M_MAM01350r" sboTerm="SBO:0000247" id="M_MAM01350r" name="apoA1" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C1367H2173N381O419S4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01350r">
+            <rdf:Description rdf:about="#M_MAM01350r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/PROTEIN"/>
@@ -33697,10 +33696,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM01350e" sboTerm="SBO:0000247" id="MAM01350e" name="apoA1" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C1367H2173N381O419S4">
+      <species metaid="M_MAM01350e" sboTerm="SBO:0000247" id="M_MAM01350e" name="apoA1" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C1367H2173N381O419S4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01350e">
+            <rdf:Description rdf:about="#M_MAM01350e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/PROTEIN"/>
@@ -33712,10 +33711,10 @@
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-      <species metaid="MAM01351c" sboTerm="SBO:0000247" id="MAM01351c" name="apoB100" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C23182H36564N6112O6944S104">
+      <species metaid="M_MAM01351c" sboTerm="SBO:0000247" id="M_MAM01351c" name="apoB100" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C23182H36564N6112O6944S104">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01351c">
+            <rdf:Description rdf:about="#M_MAM01351c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/PROTEIN"/>
@@ -33726,10 +33725,10 @@
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         </annotation>
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-      <species metaid="MAM01351l" sboTerm="SBO:0000247" id="MAM01351l" name="apoB100" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C23182H36564N6112O6944S104">
+      <species metaid="M_MAM01351l" sboTerm="SBO:0000247" id="M_MAM01351l" name="apoB100" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C23182H36564N6112O6944S104">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01351l">
+            <rdf:Description rdf:about="#M_MAM01351l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/PROTEIN"/>
@@ -33740,10 +33739,10 @@
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         </annotation>
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-      <species metaid="MAM01351r" sboTerm="SBO:0000247" id="MAM01351r" name="apoB100" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C23182H36564N6112O6944S104">
+      <species metaid="M_MAM01351r" sboTerm="SBO:0000247" id="M_MAM01351r" name="apoB100" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C23182H36564N6112O6944S104">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01351r">
+            <rdf:Description rdf:about="#M_MAM01351r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/PROTEIN"/>
@@ -33754,10 +33753,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM01352l" sboTerm="SBO:0000247" id="MAM01352l" name="apoB48" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C23203H36592N6110O6947S103">
+      <species metaid="M_MAM01352l" sboTerm="SBO:0000247" id="M_MAM01352l" name="apoB48" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C23203H36592N6110O6947S103">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01352l">
+            <rdf:Description rdf:about="#M_MAM01352l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/PROTEIN"/>
@@ -33768,10 +33767,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01353c" sboTerm="SBO:0000247" id="MAM01353c" name="apoC1" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C421H695N109O124S2">
+      <species metaid="M_MAM01353c" sboTerm="SBO:0000247" id="M_MAM01353c" name="apoC1" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C421H695N109O124S2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01353c">
+            <rdf:Description rdf:about="#M_MAM01353c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/PROTEIN"/>
@@ -33782,10 +33781,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01353r" sboTerm="SBO:0000247" id="MAM01353r" name="apoC1" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C421H695N109O124S2">
+      <species metaid="M_MAM01353r" sboTerm="SBO:0000247" id="M_MAM01353r" name="apoC1" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C421H695N109O124S2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01353r">
+            <rdf:Description rdf:about="#M_MAM01353r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/PROTEIN"/>
@@ -33796,10 +33795,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01354c" sboTerm="SBO:0000247" id="MAM01354c" name="apoC2" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C509H801N123O159S3">
+      <species metaid="M_MAM01354c" sboTerm="SBO:0000247" id="M_MAM01354c" name="apoC2" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C509H801N123O159S3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01354c">
+            <rdf:Description rdf:about="#M_MAM01354c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/PROTEIN"/>
@@ -33810,10 +33809,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01354r" sboTerm="SBO:0000247" id="MAM01354r" name="apoC2" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C509H801N123O159S3">
+      <species metaid="M_MAM01354r" sboTerm="SBO:0000247" id="M_MAM01354r" name="apoC2" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C509H801N123O159S3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01354r">
+            <rdf:Description rdf:about="#M_MAM01354r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/PROTEIN"/>
@@ -33824,10 +33823,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01355c" sboTerm="SBO:0000247" id="MAM01355c" name="apoC3" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C484H760N128O149S3">
+      <species metaid="M_MAM01355c" sboTerm="SBO:0000247" id="M_MAM01355c" name="apoC3" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C484H760N128O149S3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01355c">
+            <rdf:Description rdf:about="#M_MAM01355c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/PROTEIN"/>
@@ -33838,10 +33837,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01355r" sboTerm="SBO:0000247" id="MAM01355r" name="apoC3" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C484H760N128O149S3">
+      <species metaid="M_MAM01355r" sboTerm="SBO:0000247" id="M_MAM01355r" name="apoC3" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C484H760N128O149S3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01355r">
+            <rdf:Description rdf:about="#M_MAM01355r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/PROTEIN"/>
@@ -33852,10 +33851,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01356c" sboTerm="SBO:0000247" id="MAM01356c" name="apoC-lys" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H13N2OX">
+      <species metaid="M_MAM01356c" sboTerm="SBO:0000247" id="M_MAM01356c" name="apoC-lys" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H13N2OX">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01356c">
+            <rdf:Description rdf:about="#M_MAM01356c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/apoC_Lys"/>
@@ -33867,10 +33866,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01356e" sboTerm="SBO:0000247" id="MAM01356e" name="apoC-lys" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H13N2OX">
+      <species metaid="M_MAM01356e" sboTerm="SBO:0000247" id="M_MAM01356e" name="apoC-lys" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H13N2OX">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01356e">
+            <rdf:Description rdf:about="#M_MAM01356e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/apoC_Lys"/>
@@ -33882,10 +33881,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01357c" sboTerm="SBO:0000247" id="MAM01357c" name="apoC-lys_btn" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C16H27N4O3SX">
+      <species metaid="M_MAM01357c" sboTerm="SBO:0000247" id="M_MAM01357c" name="apoC-lys_btn" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C16H27N4O3SX">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01357c">
+            <rdf:Description rdf:about="#M_MAM01357c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/apoC_Lys_btn"/>
@@ -33898,10 +33897,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01358c" sboTerm="SBO:0000247" id="MAM01358c" name="apocytochrome-C" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C1578H2483N443O445S20">
+      <species metaid="M_MAM01358c" sboTerm="SBO:0000247" id="M_MAM01358c" name="apocytochrome-C" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C1578H2483N443O445S20">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01358c">
+            <rdf:Description rdf:about="#M_MAM01358c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C02248"/>
@@ -33913,10 +33912,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01358l" sboTerm="SBO:0000247" id="MAM01358l" name="apocytochrome-C" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C1578H2483N443O445S20">
+      <species metaid="M_MAM01358l" sboTerm="SBO:0000247" id="M_MAM01358l" name="apocytochrome-C" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C1578H2483N443O445S20">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01358l">
+            <rdf:Description rdf:about="#M_MAM01358l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C02248"/>
@@ -33928,10 +33927,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01358m" sboTerm="SBO:0000247" id="MAM01358m" name="apocytochrome-C" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C1578H2483N443O445S20">
+      <species metaid="M_MAM01358m" sboTerm="SBO:0000247" id="M_MAM01358m" name="apocytochrome-C" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C1578H2483N443O445S20">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01358m">
+            <rdf:Description rdf:about="#M_MAM01358m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C02248"/>
@@ -33943,10 +33942,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01359c" sboTerm="SBO:0000247" id="MAM01359c" name="apoE" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C1569H2559N477O483S10">
+      <species metaid="M_MAM01359c" sboTerm="SBO:0000247" id="M_MAM01359c" name="apoE" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C1569H2559N477O483S10">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01359c">
+            <rdf:Description rdf:about="#M_MAM01359c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/PROTEIN"/>
@@ -33957,10 +33956,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01359l" sboTerm="SBO:0000247" id="MAM01359l" name="apoE" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C1569H2559N477O483S10">
+      <species metaid="M_MAM01359l" sboTerm="SBO:0000247" id="M_MAM01359l" name="apoE" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C1569H2559N477O483S10">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01359l">
+            <rdf:Description rdf:about="#M_MAM01359l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/PROTEIN"/>
@@ -33971,10 +33970,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01359r" sboTerm="SBO:0000247" id="MAM01359r" name="apoE" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C1569H2559N477O483S10">
+      <species metaid="M_MAM01359r" sboTerm="SBO:0000247" id="M_MAM01359r" name="apoE" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C1569H2559N477O483S10">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01359r">
+            <rdf:Description rdf:about="#M_MAM01359r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/PROTEIN"/>
@@ -33985,10 +33984,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01361c" sboTerm="SBO:0000247" id="MAM01361c" name="aquacob(III)alamin" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C62H90CoN13O15P">
+      <species metaid="M_MAM01361c" sboTerm="SBO:0000247" id="M_MAM01361c" name="aquacob(III)alamin" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C62H90CoN13O15P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01361c">
+            <rdf:Description rdf:about="#M_MAM01361c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/aqcobal"/>
@@ -34002,10 +34001,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01361e" sboTerm="SBO:0000247" id="MAM01361e" name="aquacob(III)alamin" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C62H90CoN13O15P">
+      <species metaid="M_MAM01361e" sboTerm="SBO:0000247" id="M_MAM01361e" name="aquacob(III)alamin" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C62H90CoN13O15P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01361e">
+            <rdf:Description rdf:about="#M_MAM01361e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/aqcobal"/>
@@ -34019,10 +34018,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM01362c" sboTerm="SBO:0000247" id="MAM01362c" name="arachidonate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O2">
+      <species metaid="M_MAM01362c" sboTerm="SBO:0000247" id="M_MAM01362c" name="arachidonate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01362c">
+            <rdf:Description rdf:about="#M_MAM01362c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/arachd"/>
@@ -34039,10 +34038,10 @@
           </rdf:RDF>
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-      <species metaid="MAM01362l" sboTerm="SBO:0000247" id="MAM01362l" name="arachidonate" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O2">
+      <species metaid="M_MAM01362l" sboTerm="SBO:0000247" id="M_MAM01362l" name="arachidonate" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01362l">
+            <rdf:Description rdf:about="#M_MAM01362l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/arachd"/>
@@ -34059,10 +34058,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM01362n" sboTerm="SBO:0000247" id="MAM01362n" name="arachidonate" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O2">
+      <species metaid="M_MAM01362n" sboTerm="SBO:0000247" id="M_MAM01362n" name="arachidonate" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01362n">
+            <rdf:Description rdf:about="#M_MAM01362n">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/arachd"/>
@@ -34079,10 +34078,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM01362x" sboTerm="SBO:0000247" id="MAM01362x" name="arachidonate" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O2">
+      <species metaid="M_MAM01362x" sboTerm="SBO:0000247" id="M_MAM01362x" name="arachidonate" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01362x">
+            <rdf:Description rdf:about="#M_MAM01362x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/arachd"/>
@@ -34099,10 +34098,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM01362r" sboTerm="SBO:0000247" id="MAM01362r" name="arachidonate" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O2">
+      <species metaid="M_MAM01362r" sboTerm="SBO:0000247" id="M_MAM01362r" name="arachidonate" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01362r">
+            <rdf:Description rdf:about="#M_MAM01362r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/arachd"/>
@@ -34119,10 +34118,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM01362e" sboTerm="SBO:0000247" id="MAM01362e" name="arachidonate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O2">
+      <species metaid="M_MAM01362e" sboTerm="SBO:0000247" id="M_MAM01362e" name="arachidonate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01362e">
+            <rdf:Description rdf:about="#M_MAM01362e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/arachd"/>
@@ -34139,10 +34138,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM01363c" sboTerm="SBO:0000247" id="MAM01363c" name="arachidonyl-carnitine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H45NO4">
+      <species metaid="M_MAM01363c" sboTerm="SBO:0000247" id="M_MAM01363c" name="arachidonyl-carnitine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H45NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01363c">
+            <rdf:Description rdf:about="#M_MAM01363c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/arachdcrn"/>
@@ -34154,10 +34153,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM01363m" sboTerm="SBO:0000247" id="MAM01363m" name="arachidonyl-carnitine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H45NO4">
+      <species metaid="M_MAM01363m" sboTerm="SBO:0000247" id="M_MAM01363m" name="arachidonyl-carnitine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H45NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01363m">
+            <rdf:Description rdf:about="#M_MAM01363m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/arachdcrn"/>
@@ -34169,10 +34168,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01363r" sboTerm="SBO:0000247" id="MAM01363r" name="arachidonyl-carnitine" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H45NO4">
+      <species metaid="M_MAM01363r" sboTerm="SBO:0000247" id="M_MAM01363r" name="arachidonyl-carnitine" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H45NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01363r">
+            <rdf:Description rdf:about="#M_MAM01363r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/arachdcrn"/>
@@ -34184,10 +34183,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01364c" sboTerm="SBO:0000247" id="MAM01364c" name="arachidonyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H62N7O17P3S">
+      <species metaid="M_MAM01364c" sboTerm="SBO:0000247" id="M_MAM01364c" name="arachidonyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H62N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01364c">
+            <rdf:Description rdf:about="#M_MAM01364c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/arachdcoa"/>
@@ -34205,10 +34204,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM01364m" sboTerm="SBO:0000247" id="MAM01364m" name="arachidonyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H62N7O17P3S">
+      <species metaid="M_MAM01364m" sboTerm="SBO:0000247" id="M_MAM01364m" name="arachidonyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H62N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01364m">
+            <rdf:Description rdf:about="#M_MAM01364m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/arachdcoa"/>
@@ -34226,10 +34225,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM01364x" sboTerm="SBO:0000247" id="MAM01364x" name="arachidonyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H62N7O17P3S">
+      <species metaid="M_MAM01364x" sboTerm="SBO:0000247" id="M_MAM01364x" name="arachidonyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H62N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01364x">
+            <rdf:Description rdf:about="#M_MAM01364x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/arachdcoa"/>
@@ -34247,10 +34246,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM01364r" sboTerm="SBO:0000247" id="MAM01364r" name="arachidonyl-CoA" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H62N7O17P3S">
+      <species metaid="M_MAM01364r" sboTerm="SBO:0000247" id="M_MAM01364r" name="arachidonyl-CoA" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H62N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01364r">
+            <rdf:Description rdf:about="#M_MAM01364r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/arachdcoa"/>
@@ -34268,10 +34267,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM01365c" sboTerm="SBO:0000247" id="MAM01365c" name="arginine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C6H15N4O2">
+      <species metaid="M_MAM01365c" sboTerm="SBO:0000247" id="M_MAM01365c" name="arginine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C6H15N4O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01365c">
+            <rdf:Description rdf:about="#M_MAM01365c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/arg__L"/>
@@ -34287,10 +34286,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM01365l" sboTerm="SBO:0000247" id="MAM01365l" name="arginine" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C6H15N4O2">
+      <species metaid="M_MAM01365l" sboTerm="SBO:0000247" id="M_MAM01365l" name="arginine" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C6H15N4O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01365l">
+            <rdf:Description rdf:about="#M_MAM01365l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/arg__L"/>
@@ -34306,10 +34305,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM01365m" sboTerm="SBO:0000247" id="MAM01365m" name="arginine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C6H15N4O2">
+      <species metaid="M_MAM01365m" sboTerm="SBO:0000247" id="M_MAM01365m" name="arginine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C6H15N4O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01365m">
+            <rdf:Description rdf:about="#M_MAM01365m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/arg__L"/>
@@ -34325,10 +34324,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM01365e" sboTerm="SBO:0000247" id="MAM01365e" name="arginine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C6H15N4O2">
+      <species metaid="M_MAM01365e" sboTerm="SBO:0000247" id="M_MAM01365e" name="arginine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C6H15N4O2">
         <annotation>
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-            <rdf:Description rdf:about="#MAM01365e">
+            <rdf:Description rdf:about="#M_MAM01365e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/arg__L"/>
@@ -34344,10 +34343,10 @@
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-      <species metaid="MAM01366c" sboTerm="SBO:0000247" id="MAM01366c" name="argininosuccinate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H17N4O6">
+      <species metaid="M_MAM01366c" sboTerm="SBO:0000247" id="M_MAM01366c" name="argininosuccinate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H17N4O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01366c">
+            <rdf:Description rdf:about="#M_MAM01366c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/argsuc"/>
@@ -34363,10 +34362,10 @@
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-      <species metaid="MAM01368c" sboTerm="SBO:0000247" id="MAM01368c" name="ascorbate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H7O6">
+      <species metaid="M_MAM01368c" sboTerm="SBO:0000247" id="M_MAM01368c" name="ascorbate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H7O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01368c">
+            <rdf:Description rdf:about="#M_MAM01368c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ascb__L"/>
@@ -34382,10 +34381,10 @@
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-      <species metaid="MAM01368e" sboTerm="SBO:0000247" id="MAM01368e" name="ascorbate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H7O6">
+      <species metaid="M_MAM01368e" sboTerm="SBO:0000247" id="M_MAM01368e" name="ascorbate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H7O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01368e">
+            <rdf:Description rdf:about="#M_MAM01368e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ascb__L"/>
@@ -34401,10 +34400,10 @@
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-      <species metaid="MAM01369c" sboTerm="SBO:0000247" id="MAM01369c" name="asparagine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H8N2O3">
+      <species metaid="M_MAM01369c" sboTerm="SBO:0000247" id="M_MAM01369c" name="asparagine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H8N2O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01369c">
+            <rdf:Description rdf:about="#M_MAM01369c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/asn__L"/>
@@ -34420,10 +34419,10 @@
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-      <species metaid="MAM01369l" sboTerm="SBO:0000247" id="MAM01369l" name="asparagine" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H8N2O3">
+      <species metaid="M_MAM01369l" sboTerm="SBO:0000247" id="M_MAM01369l" name="asparagine" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H8N2O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01369l">
+            <rdf:Description rdf:about="#M_MAM01369l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/asn__L"/>
@@ -34439,10 +34438,10 @@
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-      <species metaid="MAM01369m" sboTerm="SBO:0000247" id="MAM01369m" name="asparagine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H8N2O3">
+      <species metaid="M_MAM01369m" sboTerm="SBO:0000247" id="M_MAM01369m" name="asparagine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H8N2O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01369m">
+            <rdf:Description rdf:about="#M_MAM01369m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/asn__L"/>
@@ -34458,10 +34457,10 @@
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         </annotation>
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-      <species metaid="MAM01369e" sboTerm="SBO:0000247" id="MAM01369e" name="asparagine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H8N2O3">
+      <species metaid="M_MAM01369e" sboTerm="SBO:0000247" id="M_MAM01369e" name="asparagine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H8N2O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01369e">
+            <rdf:Description rdf:about="#M_MAM01369e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/asn__L"/>
@@ -34477,10 +34476,10 @@
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         </annotation>
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-      <species metaid="MAM01370c" sboTerm="SBO:0000247" id="MAM01370c" name="aspartate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C4H6NO4">
+      <species metaid="M_MAM01370c" sboTerm="SBO:0000247" id="M_MAM01370c" name="aspartate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C4H6NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01370c">
+            <rdf:Description rdf:about="#M_MAM01370c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/asp__L"/>
@@ -34496,10 +34495,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM01370l" sboTerm="SBO:0000247" id="MAM01370l" name="aspartate" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C4H6NO4">
+      <species metaid="M_MAM01370l" sboTerm="SBO:0000247" id="M_MAM01370l" name="aspartate" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C4H6NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01370l">
+            <rdf:Description rdf:about="#M_MAM01370l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/asp__L"/>
@@ -34515,10 +34514,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM01370m" sboTerm="SBO:0000247" id="MAM01370m" name="aspartate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C4H6NO4">
+      <species metaid="M_MAM01370m" sboTerm="SBO:0000247" id="M_MAM01370m" name="aspartate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C4H6NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01370m">
+            <rdf:Description rdf:about="#M_MAM01370m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/asp__L"/>
@@ -34534,10 +34533,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01370e" sboTerm="SBO:0000247" id="MAM01370e" name="aspartate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C4H6NO4">
+      <species metaid="M_MAM01370e" sboTerm="SBO:0000247" id="M_MAM01370e" name="aspartate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C4H6NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01370e">
+            <rdf:Description rdf:about="#M_MAM01370e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/asp__L"/>
@@ -34553,10 +34552,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM01371c" sboTerm="SBO:0000247" id="MAM01371c" name="ATP" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C10H12N5O13P3">
+      <species metaid="M_MAM01371c" sboTerm="SBO:0000247" id="M_MAM01371c" name="ATP" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C10H12N5O13P3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01371c">
+            <rdf:Description rdf:about="#M_MAM01371c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/atp"/>
@@ -34572,10 +34571,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM01371g" sboTerm="SBO:0000247" id="MAM01371g" name="ATP" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C10H12N5O13P3">
+      <species metaid="M_MAM01371g" sboTerm="SBO:0000247" id="M_MAM01371g" name="ATP" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C10H12N5O13P3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01371g">
+            <rdf:Description rdf:about="#M_MAM01371g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/atp"/>
@@ -34591,10 +34590,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM01371l" sboTerm="SBO:0000247" id="MAM01371l" name="ATP" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C10H12N5O13P3">
+      <species metaid="M_MAM01371l" sboTerm="SBO:0000247" id="M_MAM01371l" name="ATP" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C10H12N5O13P3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01371l">
+            <rdf:Description rdf:about="#M_MAM01371l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/atp"/>
@@ -34610,10 +34609,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM01371m" sboTerm="SBO:0000247" id="MAM01371m" name="ATP" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C10H12N5O13P3">
+      <species metaid="M_MAM01371m" sboTerm="SBO:0000247" id="M_MAM01371m" name="ATP" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C10H12N5O13P3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01371m">
+            <rdf:Description rdf:about="#M_MAM01371m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/atp"/>
@@ -34629,10 +34628,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01371n" sboTerm="SBO:0000247" id="MAM01371n" name="ATP" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C10H12N5O13P3">
+      <species metaid="M_MAM01371n" sboTerm="SBO:0000247" id="M_MAM01371n" name="ATP" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C10H12N5O13P3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01371n">
+            <rdf:Description rdf:about="#M_MAM01371n">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/atp"/>
@@ -34648,10 +34647,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01371x" sboTerm="SBO:0000247" id="MAM01371x" name="ATP" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C10H12N5O13P3">
+      <species metaid="M_MAM01371x" sboTerm="SBO:0000247" id="M_MAM01371x" name="ATP" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C10H12N5O13P3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01371x">
+            <rdf:Description rdf:about="#M_MAM01371x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/atp"/>
@@ -34667,10 +34666,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01371r" sboTerm="SBO:0000247" id="MAM01371r" name="ATP" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C10H12N5O13P3">
+      <species metaid="M_MAM01371r" sboTerm="SBO:0000247" id="M_MAM01371r" name="ATP" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C10H12N5O13P3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01371r">
+            <rdf:Description rdf:about="#M_MAM01371r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/atp"/>
@@ -34686,10 +34685,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01371e" sboTerm="SBO:0000247" id="MAM01371e" name="ATP" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C10H12N5O13P3">
+      <species metaid="M_MAM01371e" sboTerm="SBO:0000247" id="M_MAM01371e" name="ATP" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C10H12N5O13P3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01371e">
+            <rdf:Description rdf:about="#M_MAM01371e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/atp"/>
@@ -34705,10 +34704,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01372c" sboTerm="SBO:0000247" id="MAM01372c" name="azelaic acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C9H14O4">
+      <species metaid="M_MAM01372c" sboTerm="SBO:0000247" id="M_MAM01372c" name="azelaic acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C9H14O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01372c">
+            <rdf:Description rdf:about="#M_MAM01372c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:48131"/>
@@ -34724,10 +34723,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01373c" sboTerm="SBO:0000247" id="MAM01373c" name="behenic acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C22H43O2">
+      <species metaid="M_MAM01373c" sboTerm="SBO:0000247" id="M_MAM01373c" name="behenic acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C22H43O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01373c">
+            <rdf:Description rdf:about="#M_MAM01373c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:28941"/>
@@ -34744,10 +34743,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01373l" sboTerm="SBO:0000247" id="MAM01373l" name="behenic acid" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C22H43O2">
+      <species metaid="M_MAM01373l" sboTerm="SBO:0000247" id="M_MAM01373l" name="behenic acid" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C22H43O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01373l">
+            <rdf:Description rdf:about="#M_MAM01373l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:28941"/>
@@ -34764,10 +34763,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01373r" sboTerm="SBO:0000247" id="MAM01373r" name="behenic acid" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C22H43O2">
+      <species metaid="M_MAM01373r" sboTerm="SBO:0000247" id="M_MAM01373r" name="behenic acid" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C22H43O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01373r">
+            <rdf:Description rdf:about="#M_MAM01373r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:28941"/>
@@ -34784,10 +34783,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01373e" sboTerm="SBO:0000247" id="MAM01373e" name="behenic acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C22H43O2">
+      <species metaid="M_MAM01373e" sboTerm="SBO:0000247" id="M_MAM01373e" name="behenic acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C22H43O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01373e">
+            <rdf:Description rdf:about="#M_MAM01373e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:28941"/>
@@ -34804,10 +34803,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01374c" sboTerm="SBO:0000247" id="MAM01374c" name="benzo[a]pyrene" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H12">
+      <species metaid="M_MAM01374c" sboTerm="SBO:0000247" id="M_MAM01374c" name="benzo[a]pyrene" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H12">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01374c">
+            <rdf:Description rdf:about="#M_MAM01374c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:29865"/>
@@ -34821,10 +34820,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01374e" sboTerm="SBO:0000247" id="MAM01374e" name="benzo[a]pyrene" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H12">
+      <species metaid="M_MAM01374e" sboTerm="SBO:0000247" id="M_MAM01374e" name="benzo[a]pyrene" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H12">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01374e">
+            <rdf:Description rdf:about="#M_MAM01374e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:29865"/>
@@ -34838,10 +34837,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01375c" sboTerm="SBO:0000247" id="MAM01375c" name="benzo[a]pyrene-4,5-oxide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H12O">
+      <species metaid="M_MAM01375c" sboTerm="SBO:0000247" id="M_MAM01375c" name="benzo[a]pyrene-4,5-oxide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H12O">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01375c">
+            <rdf:Description rdf:about="#M_MAM01375c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C14851"/>
@@ -34855,10 +34854,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01376c" sboTerm="SBO:0000247" id="MAM01376c" name="benzo[a]pyrene-7,8-dihydrodiol-9,10-oxide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H14O3">
+      <species metaid="M_MAM01376c" sboTerm="SBO:0000247" id="M_MAM01376c" name="benzo[a]pyrene-7,8-dihydrodiol-9,10-oxide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H14O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01376c">
+            <rdf:Description rdf:about="#M_MAM01376c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C14853"/>
@@ -34870,10 +34869,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01377c" sboTerm="SBO:0000247" id="MAM01377c" name="benzo[a]pyrene-7,8-diol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H14O2">
+      <species metaid="M_MAM01377c" sboTerm="SBO:0000247" id="M_MAM01377c" name="benzo[a]pyrene-7,8-diol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H14O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01377c">
+            <rdf:Description rdf:about="#M_MAM01377c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C14852"/>
@@ -34885,10 +34884,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01378c" sboTerm="SBO:0000247" id="MAM01378c" name="benzo[a]pyrene-7,8-oxide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H12O">
+      <species metaid="M_MAM01378c" sboTerm="SBO:0000247" id="M_MAM01378c" name="benzo[a]pyrene-7,8-oxide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H12O">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01378c">
+            <rdf:Description rdf:about="#M_MAM01378c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C14850"/>
@@ -34900,10 +34899,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01379c" sboTerm="SBO:0000247" id="MAM01379c" name="benzo[a]pyrene-9,10-oxide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H12O">
+      <species metaid="M_MAM01379c" sboTerm="SBO:0000247" id="M_MAM01379c" name="benzo[a]pyrene-9,10-oxide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H12O">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01379c">
+            <rdf:Description rdf:about="#M_MAM01379c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C14849"/>
@@ -34917,10 +34916,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01380c" sboTerm="SBO:0000247" id="MAM01380c" name="benzoate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C7H5O2">
+      <species metaid="M_MAM01380c" sboTerm="SBO:0000247" id="M_MAM01380c" name="benzoate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C7H5O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01380c">
+            <rdf:Description rdf:about="#M_MAM01380c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/bz"/>
@@ -34934,10 +34933,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01380r" sboTerm="SBO:0000247" id="MAM01380r" name="benzoate" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C7H5O2">
+      <species metaid="M_MAM01380r" sboTerm="SBO:0000247" id="M_MAM01380r" name="benzoate" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C7H5O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01380r">
+            <rdf:Description rdf:about="#M_MAM01380r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/bz"/>
@@ -34951,10 +34950,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01381c" sboTerm="SBO:0000247" id="MAM01381c" name="benzothiazine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C11H12N2O3S">
+      <species metaid="M_MAM01381c" sboTerm="SBO:0000247" id="M_MAM01381c" name="benzothiazine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C11H12N2O3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01381c">
+            <rdf:Description rdf:about="#M_MAM01381c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM43602"/>
@@ -34965,10 +34964,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01382l" sboTerm="SBO:0000247" id="MAM01382l" name="beta-1,4-mannose-N-acetylglucosamine" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C14H25NO11">
+      <species metaid="M_MAM01382l" sboTerm="SBO:0000247" id="M_MAM01382l" name="beta-1,4-mannose-N-acetylglucosamine" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C14H25NO11">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01382l">
+            <rdf:Description rdf:about="#M_MAM01382l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/mn"/>
@@ -34983,10 +34982,10 @@
           </rdf:RDF>
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-      <species metaid="MAM01383c" sboTerm="SBO:0000247" id="MAM01383c" name="beta-alanine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H7NO2">
+      <species metaid="M_MAM01383c" sboTerm="SBO:0000247" id="M_MAM01383c" name="beta-alanine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H7NO2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01383c">
+            <rdf:Description rdf:about="#M_MAM01383c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ala_B"/>
@@ -35002,10 +35001,10 @@
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-      <species metaid="MAM01383m" sboTerm="SBO:0000247" id="MAM01383m" name="beta-alanine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H7NO2">
+      <species metaid="M_MAM01383m" sboTerm="SBO:0000247" id="M_MAM01383m" name="beta-alanine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H7NO2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01383m">
+            <rdf:Description rdf:about="#M_MAM01383m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ala_B"/>
@@ -35021,10 +35020,10 @@
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-      <species metaid="MAM01383e" sboTerm="SBO:0000247" id="MAM01383e" name="beta-alanine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H7NO2">
+      <species metaid="M_MAM01383e" sboTerm="SBO:0000247" id="M_MAM01383e" name="beta-alanine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H7NO2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01383e">
+            <rdf:Description rdf:about="#M_MAM01383e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ala_B"/>
@@ -35040,10 +35039,10 @@
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-      <species metaid="MAM01384c" sboTerm="SBO:0000247" id="MAM01384c" name="beta-carboline" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C11H8N2">
+      <species metaid="M_MAM01384c" sboTerm="SBO:0000247" id="M_MAM01384c" name="beta-carboline" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C11H8N2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01384c">
+            <rdf:Description rdf:about="#M_MAM01384c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:109895"/>
@@ -35056,10 +35055,10 @@
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-      <species metaid="MAM01385c" sboTerm="SBO:0000247" id="MAM01385c" name="beta-carotene" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C40H56">
+      <species metaid="M_MAM01385c" sboTerm="SBO:0000247" id="M_MAM01385c" name="beta-carotene" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C40H56">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01385c">
+            <rdf:Description rdf:about="#M_MAM01385c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/caro"/>
@@ -35072,10 +35071,10 @@
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         </annotation>
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-      <species metaid="MAM01385e" sboTerm="SBO:0000247" id="MAM01385e" name="beta-carotene" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C40H56">
+      <species metaid="M_MAM01385e" sboTerm="SBO:0000247" id="M_MAM01385e" name="beta-carotene" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C40H56">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01385e">
+            <rdf:Description rdf:about="#M_MAM01385e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/caro"/>
@@ -35088,10 +35087,10 @@
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         </annotation>
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-      <species metaid="MAM01386c" sboTerm="SBO:0000247" id="MAM01386c" name="beta-casomorphin (1-6)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C38H49N6O10">
+      <species metaid="M_MAM01386c" sboTerm="SBO:0000247" id="M_MAM01386c" name="beta-casomorphin (1-6)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C38H49N6O10">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01386c">
+            <rdf:Description rdf:about="#M_MAM01386c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM152651"/>
@@ -35102,10 +35101,10 @@
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         </annotation>
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-      <species metaid="MAM01387c" sboTerm="SBO:0000247" id="MAM01387c" name="beta-casomorphin" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C44H60N7O11">
+      <species metaid="M_MAM01387c" sboTerm="SBO:0000247" id="M_MAM01387c" name="beta-casomorphin" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C44H60N7O11">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01387c">
+            <rdf:Description rdf:about="#M_MAM01387c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM163311"/>
@@ -35117,10 +35116,10 @@
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         </annotation>
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-      <species metaid="MAM01388c" sboTerm="SBO:0000247" id="MAM01388c" name="beta-D-glucose" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H12O6">
+      <species metaid="M_MAM01388c" sboTerm="SBO:0000247" id="M_MAM01388c" name="beta-D-glucose" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H12O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01388c">
+            <rdf:Description rdf:about="#M_MAM01388c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:15903"/>
@@ -35133,10 +35132,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01390c" sboTerm="SBO:0000247" id="MAM01390c" name="beta-D-mannosyldiacetylchitobiosyldiphosphodolichol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C122H200N2O22P2">
+      <species metaid="M_MAM01390c" sboTerm="SBO:0000247" id="M_MAM01390c" name="beta-D-mannosyldiacetylchitobiosyldiphosphodolichol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C122H200N2O22P2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01390c">
+            <rdf:Description rdf:about="#M_MAM01390c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/mpdol__L"/>
@@ -35150,10 +35149,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM01391c" sboTerm="SBO:0000247" id="MAM01391c" name="beta-GalNAc-globoside" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C52H92N3O27RCO">
+      <species metaid="M_MAM01391c" sboTerm="SBO:0000247" id="M_MAM01391c" name="beta-GalNAc-globoside" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C52H92N3O27RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01391c">
+            <rdf:Description rdf:about="#M_MAM01391c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/acgbgbside_hs"/>
@@ -35165,10 +35164,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01391g" sboTerm="SBO:0000247" id="MAM01391g" name="beta-GalNAc-globoside" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C52H92N3O27RCO">
+      <species metaid="M_MAM01391g" sboTerm="SBO:0000247" id="M_MAM01391g" name="beta-GalNAc-globoside" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C52H92N3O27RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01391g">
+            <rdf:Description rdf:about="#M_MAM01391g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/acgbgbside_hs"/>
@@ -35180,10 +35179,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01391l" sboTerm="SBO:0000247" id="MAM01391l" name="beta-GalNAc-globoside" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C52H92N3O27RCO">
+      <species metaid="M_MAM01391l" sboTerm="SBO:0000247" id="M_MAM01391l" name="beta-GalNAc-globoside" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C52H92N3O27RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01391l">
+            <rdf:Description rdf:about="#M_MAM01391l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/acgbgbside_hs"/>
@@ -35195,10 +35194,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM01392c" sboTerm="SBO:0000247" id="MAM01392c" name="beta-hydroxy-beta-methylbutyrate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C5H9O3">
+      <species metaid="M_MAM01392c" sboTerm="SBO:0000247" id="M_MAM01392c" name="beta-hydroxy-beta-methylbutyrate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C5H9O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01392c">
+            <rdf:Description rdf:about="#M_MAM01392c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:37084"/>
@@ -35212,10 +35211,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM01393c" sboTerm="SBO:0000247" id="MAM01393c" name="betaine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H11NO2">
+      <species metaid="M_MAM01393c" sboTerm="SBO:0000247" id="M_MAM01393c" name="betaine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H11NO2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01393c">
+            <rdf:Description rdf:about="#M_MAM01393c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/glyb"/>
@@ -35231,10 +35230,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01393m" sboTerm="SBO:0000247" id="MAM01393m" name="betaine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H11NO2">
+      <species metaid="M_MAM01393m" sboTerm="SBO:0000247" id="M_MAM01393m" name="betaine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H11NO2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01393m">
+            <rdf:Description rdf:about="#M_MAM01393m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/glyb"/>
@@ -35250,10 +35249,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01393e" sboTerm="SBO:0000247" id="MAM01393e" name="betaine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H11NO2">
+      <species metaid="M_MAM01393e" sboTerm="SBO:0000247" id="M_MAM01393e" name="betaine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H11NO2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01393e">
+            <rdf:Description rdf:about="#M_MAM01393e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/glyb"/>
@@ -35269,10 +35268,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01394c" sboTerm="SBO:0000247" id="MAM01394c" name="betaine_aldehyde" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C5H12NO">
+      <species metaid="M_MAM01394c" sboTerm="SBO:0000247" id="M_MAM01394c" name="betaine_aldehyde" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C5H12NO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01394c">
+            <rdf:Description rdf:about="#M_MAM01394c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/betald"/>
@@ -35287,10 +35286,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01394m" sboTerm="SBO:0000247" id="MAM01394m" name="betaine_aldehyde" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C5H12NO">
+      <species metaid="M_MAM01394m" sboTerm="SBO:0000247" id="M_MAM01394m" name="betaine_aldehyde" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C5H12NO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01394m">
+            <rdf:Description rdf:about="#M_MAM01394m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/betald"/>
@@ -35305,10 +35304,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM01395c" sboTerm="SBO:0000247" id="MAM01395c" name="bile-PC pool" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H18NO8PR2">
+      <species metaid="M_MAM01395c" sboTerm="SBO:0000247" id="M_MAM01395c" name="bile-PC pool" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H18NO8PR2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01395c">
+            <rdf:Description rdf:about="#M_MAM01395c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/HC02080"/>
@@ -35318,10 +35317,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01395e" sboTerm="SBO:0000247" id="MAM01395e" name="bile-PC pool" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H18NO8PR2">
+      <species metaid="M_MAM01395e" sboTerm="SBO:0000247" id="M_MAM01395e" name="bile-PC pool" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H18NO8PR2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01395e">
+            <rdf:Description rdf:about="#M_MAM01395e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/HC02080"/>
@@ -35331,10 +35330,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01396c" sboTerm="SBO:0000247" id="MAM01396c" name="bilirubin" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C33H34N4O6">
+      <species metaid="M_MAM01396c" sboTerm="SBO:0000247" id="M_MAM01396c" name="bilirubin" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C33H34N4O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01396c">
+            <rdf:Description rdf:about="#M_MAM01396c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/bilirub"/>
@@ -35350,10 +35349,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01396r" sboTerm="SBO:0000247" id="MAM01396r" name="bilirubin" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C33H34N4O6">
+      <species metaid="M_MAM01396r" sboTerm="SBO:0000247" id="M_MAM01396r" name="bilirubin" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C33H34N4O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01396r">
+            <rdf:Description rdf:about="#M_MAM01396r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/bilirub"/>
@@ -35369,10 +35368,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01396e" sboTerm="SBO:0000247" id="MAM01396e" name="bilirubin" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C33H34N4O6">
+      <species metaid="M_MAM01396e" sboTerm="SBO:0000247" id="M_MAM01396e" name="bilirubin" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C33H34N4O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01396e">
+            <rdf:Description rdf:about="#M_MAM01396e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/bilirub"/>
@@ -35388,10 +35387,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01397c" sboTerm="SBO:0000247" id="MAM01397c" name="bilirubin-bisglucuronoside" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C45H50N4O18">
+      <species metaid="M_MAM01397c" sboTerm="SBO:0000247" id="M_MAM01397c" name="bilirubin-bisglucuronoside" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C45H50N4O18">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01397c">
+            <rdf:Description rdf:about="#M_MAM01397c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/bildglcur"/>
@@ -35406,10 +35405,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01397r" sboTerm="SBO:0000247" id="MAM01397r" name="bilirubin-bisglucuronoside" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C45H50N4O18">
+      <species metaid="M_MAM01397r" sboTerm="SBO:0000247" id="M_MAM01397r" name="bilirubin-bisglucuronoside" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C45H50N4O18">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01397r">
+            <rdf:Description rdf:about="#M_MAM01397r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/bildglcur"/>
@@ -35424,10 +35423,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01397e" sboTerm="SBO:0000247" id="MAM01397e" name="bilirubin-bisglucuronoside" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C45H50N4O18">
+      <species metaid="M_MAM01397e" sboTerm="SBO:0000247" id="M_MAM01397e" name="bilirubin-bisglucuronoside" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C45H50N4O18">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01397e">
+            <rdf:Description rdf:about="#M_MAM01397e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/bildglcur"/>
@@ -35442,10 +35441,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01398c" sboTerm="SBO:0000247" id="MAM01398c" name="bilirubin-monoglucuronoside" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C39H42N4O12">
+      <species metaid="M_MAM01398c" sboTerm="SBO:0000247" id="M_MAM01398c" name="bilirubin-monoglucuronoside" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C39H42N4O12">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01398c">
+            <rdf:Description rdf:about="#M_MAM01398c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/bilglcur"/>
@@ -35459,10 +35458,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01398r" sboTerm="SBO:0000247" id="MAM01398r" name="bilirubin-monoglucuronoside" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C39H42N4O12">
+      <species metaid="M_MAM01398r" sboTerm="SBO:0000247" id="M_MAM01398r" name="bilirubin-monoglucuronoside" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C39H42N4O12">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01398r">
+            <rdf:Description rdf:about="#M_MAM01398r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/bilglcur"/>
@@ -35476,10 +35475,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01398e" sboTerm="SBO:0000247" id="MAM01398e" name="bilirubin-monoglucuronoside" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C39H42N4O12">
+      <species metaid="M_MAM01398e" sboTerm="SBO:0000247" id="M_MAM01398e" name="bilirubin-monoglucuronoside" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C39H42N4O12">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01398e">
+            <rdf:Description rdf:about="#M_MAM01398e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/bilglcur"/>
@@ -35493,10 +35492,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01399c" sboTerm="SBO:0000247" id="MAM01399c" name="biliverdin" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C33H32N4O6">
+      <species metaid="M_MAM01399c" sboTerm="SBO:0000247" id="M_MAM01399c" name="biliverdin" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C33H32N4O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01399c">
+            <rdf:Description rdf:about="#M_MAM01399c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/biliverd"/>
@@ -35510,10 +35509,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01400c" sboTerm="SBO:0000247" id="MAM01400c" name="biocytin" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C16H28N4O4S">
+      <species metaid="M_MAM01400c" sboTerm="SBO:0000247" id="M_MAM01400c" name="biocytin" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C16H28N4O4S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01400c">
+            <rdf:Description rdf:about="#M_MAM01400c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/biocyt"/>
@@ -35530,10 +35529,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01400n" sboTerm="SBO:0000247" id="MAM01400n" name="biocytin" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C16H28N4O4S">
+      <species metaid="M_MAM01400n" sboTerm="SBO:0000247" id="M_MAM01400n" name="biocytin" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C16H28N4O4S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01400n">
+            <rdf:Description rdf:about="#M_MAM01400n">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/biocyt"/>
@@ -35550,10 +35549,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01400e" sboTerm="SBO:0000247" id="MAM01400e" name="biocytin" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C16H28N4O4S">
+      <species metaid="M_MAM01400e" sboTerm="SBO:0000247" id="M_MAM01400e" name="biocytin" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C16H28N4O4S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01400e">
+            <rdf:Description rdf:about="#M_MAM01400e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/biocyt"/>
@@ -35570,10 +35569,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01401c" sboTerm="SBO:0000247" id="MAM01401c" name="biotin" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H15N2O3S">
+      <species metaid="M_MAM01401c" sboTerm="SBO:0000247" id="M_MAM01401c" name="biotin" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H15N2O3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01401c">
+            <rdf:Description rdf:about="#M_MAM01401c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/btn"/>
@@ -35589,10 +35588,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01401n" sboTerm="SBO:0000247" id="MAM01401n" name="biotin" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H15N2O3S">
+      <species metaid="M_MAM01401n" sboTerm="SBO:0000247" id="M_MAM01401n" name="biotin" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H15N2O3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01401n">
+            <rdf:Description rdf:about="#M_MAM01401n">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/btn"/>
@@ -35608,10 +35607,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01401e" sboTerm="SBO:0000247" id="MAM01401e" name="biotin" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H15N2O3S">
+      <species metaid="M_MAM01401e" sboTerm="SBO:0000247" id="M_MAM01401e" name="biotin" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H15N2O3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01401e">
+            <rdf:Description rdf:about="#M_MAM01401e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/btn"/>
@@ -35627,10 +35626,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01402c" sboTerm="SBO:0000247" id="MAM01402c" name="biotinyl-5-AMP" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H27N7O9PS">
+      <species metaid="M_MAM01402c" sboTerm="SBO:0000247" id="M_MAM01402c" name="biotinyl-5-AMP" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H27N7O9PS">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01402c">
+            <rdf:Description rdf:about="#M_MAM01402c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/btamp"/>
@@ -35645,10 +35644,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01403c" sboTerm="SBO:0000247" id="MAM01403c" name="bromobenzene" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H5Br">
+      <species metaid="M_MAM01403c" sboTerm="SBO:0000247" id="M_MAM01403c" name="bromobenzene" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H5Br">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01403c">
+            <rdf:Description rdf:about="#M_MAM01403c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:3179"/>
@@ -35661,10 +35660,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01403e" sboTerm="SBO:0000247" id="MAM01403e" name="bromobenzene" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H5Br">
+      <species metaid="M_MAM01403e" sboTerm="SBO:0000247" id="M_MAM01403e" name="bromobenzene" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H5Br">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01403e">
+            <rdf:Description rdf:about="#M_MAM01403e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:3179"/>
@@ -35677,10 +35676,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01404c" sboTerm="SBO:0000247" id="MAM01404c" name="bromobenzene-2,3-dihydrodiol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H7BrO2">
+      <species metaid="M_MAM01404c" sboTerm="SBO:0000247" id="M_MAM01404c" name="bromobenzene-2,3-dihydrodiol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H7BrO2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01404c">
+            <rdf:Description rdf:about="#M_MAM01404c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C14842"/>
@@ -35692,10 +35691,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01405c" sboTerm="SBO:0000247" id="MAM01405c" name="bromobenzene-2,3-oxide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H5BrO">
+      <species metaid="M_MAM01405c" sboTerm="SBO:0000247" id="M_MAM01405c" name="bromobenzene-2,3-oxide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H5BrO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01405c">
+            <rdf:Description rdf:about="#M_MAM01405c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C14840"/>
@@ -35707,10 +35706,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01406c" sboTerm="SBO:0000247" id="MAM01406c" name="bromobenzene-3,4-dihydrodiol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H7BrO2">
+      <species metaid="M_MAM01406c" sboTerm="SBO:0000247" id="M_MAM01406c" name="bromobenzene-3,4-dihydrodiol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H7BrO2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01406c">
+            <rdf:Description rdf:about="#M_MAM01406c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C14844"/>
@@ -35722,10 +35721,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01407c" sboTerm="SBO:0000247" id="MAM01407c" name="bromobenzene-3,4-oxide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H5BrO">
+      <species metaid="M_MAM01407c" sboTerm="SBO:0000247" id="M_MAM01407c" name="bromobenzene-3,4-oxide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H5BrO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01407c">
+            <rdf:Description rdf:about="#M_MAM01407c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C14839"/>
@@ -35737,10 +35736,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01409c" sboTerm="SBO:0000247" id="MAM01409c" name="but-2-enoyl-[ACP]" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C15H25N2O8PRS">
+      <species metaid="M_MAM01409c" sboTerm="SBO:0000247" id="M_MAM01409c" name="but-2-enoyl-[ACP]" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C15H25N2O8PRS">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01409c">
+            <rdf:Description rdf:about="#M_MAM01409c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C04246"/>
@@ -35752,10 +35751,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01410c" sboTerm="SBO:0000247" id="MAM01410c" name="butyrate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C4H7O2">
+      <species metaid="M_MAM01410c" sboTerm="SBO:0000247" id="M_MAM01410c" name="butyrate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C4H7O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01410c">
+            <rdf:Description rdf:about="#M_MAM01410c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/but"/>
@@ -35773,10 +35772,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01410e" sboTerm="SBO:0000247" id="MAM01410e" name="butyrate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C4H7O2">
+      <species metaid="M_MAM01410e" sboTerm="SBO:0000247" id="M_MAM01410e" name="butyrate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C4H7O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01410e">
+            <rdf:Description rdf:about="#M_MAM01410e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/but"/>
@@ -35794,10 +35793,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01411c" sboTerm="SBO:0000247" id="MAM01411c" name="butyryl-[ACP]" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C15H27N2O8PRS">
+      <species metaid="M_MAM01411c" sboTerm="SBO:0000247" id="M_MAM01411c" name="butyryl-[ACP]" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C15H27N2O8PRS">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01411c">
+            <rdf:Description rdf:about="#M_MAM01411c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C05745"/>
@@ -35809,10 +35808,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01412c" sboTerm="SBO:0000247" id="MAM01412c" name="butyryl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C25H38N7O17P3S">
+      <species metaid="M_MAM01412c" sboTerm="SBO:0000247" id="M_MAM01412c" name="butyryl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C25H38N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01412c">
+            <rdf:Description rdf:about="#M_MAM01412c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/btcoa"/>
@@ -35828,10 +35827,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01412m" sboTerm="SBO:0000247" id="MAM01412m" name="butyryl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C25H38N7O17P3S">
+      <species metaid="M_MAM01412m" sboTerm="SBO:0000247" id="M_MAM01412m" name="butyryl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C25H38N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01412m">
+            <rdf:Description rdf:about="#M_MAM01412m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/btcoa"/>
@@ -35847,10 +35846,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01412x" sboTerm="SBO:0000247" id="MAM01412x" name="butyryl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C25H38N7O17P3S">
+      <species metaid="M_MAM01412x" sboTerm="SBO:0000247" id="M_MAM01412x" name="butyryl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C25H38N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01412x">
+            <rdf:Description rdf:about="#M_MAM01412x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/btcoa"/>
@@ -35866,10 +35865,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01413c" sboTerm="SBO:0000247" id="MAM01413c" name="Ca2+" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="Ca">
+      <species metaid="M_MAM01413c" sboTerm="SBO:0000247" id="M_MAM01413c" name="Ca2+" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="Ca">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01413c">
+            <rdf:Description rdf:about="#M_MAM01413c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ca2"/>
@@ -35885,10 +35884,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01413e" sboTerm="SBO:0000247" id="MAM01413e" name="Ca2+" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="Ca">
+      <species metaid="M_MAM01413e" sboTerm="SBO:0000247" id="M_MAM01413e" name="Ca2+" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="Ca">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01413e">
+            <rdf:Description rdf:about="#M_MAM01413e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ca2"/>
@@ -35904,10 +35903,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01415c" sboTerm="SBO:0000247" id="MAM01415c" name="calcidiol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H44O2">
+      <species metaid="M_MAM01415c" sboTerm="SBO:0000247" id="M_MAM01415c" name="calcidiol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H44O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01415c">
+            <rdf:Description rdf:about="#M_MAM01415c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/25hvitd3"/>
@@ -35925,10 +35924,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01415m" sboTerm="SBO:0000247" id="MAM01415m" name="calcidiol" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H44O2">
+      <species metaid="M_MAM01415m" sboTerm="SBO:0000247" id="M_MAM01415m" name="calcidiol" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H44O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01415m">
+            <rdf:Description rdf:about="#M_MAM01415m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/25hvitd3"/>
@@ -35946,10 +35945,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01415e" sboTerm="SBO:0000247" id="MAM01415e" name="calcidiol" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H44O2">
+      <species metaid="M_MAM01415e" sboTerm="SBO:0000247" id="M_MAM01415e" name="calcidiol" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H44O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01415e">
+            <rdf:Description rdf:about="#M_MAM01415e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/25hvitd3"/>
@@ -35967,10 +35966,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01416c" sboTerm="SBO:0000247" id="MAM01416c" name="calcitetrol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H44O4">
+      <species metaid="M_MAM01416c" sboTerm="SBO:0000247" id="M_MAM01416c" name="calcitetrol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H44O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01416c">
+            <rdf:Description rdf:about="#M_MAM01416c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/1a2425thvitd3"/>
@@ -35984,10 +35983,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01416m" sboTerm="SBO:0000247" id="MAM01416m" name="calcitetrol" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H44O4">
+      <species metaid="M_MAM01416m" sboTerm="SBO:0000247" id="M_MAM01416m" name="calcitetrol" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H44O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01416m">
+            <rdf:Description rdf:about="#M_MAM01416m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/1a2425thvitd3"/>
@@ -36001,10 +36000,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01417c" sboTerm="SBO:0000247" id="MAM01417c" name="calcitriol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H44O3">
+      <species metaid="M_MAM01417c" sboTerm="SBO:0000247" id="M_MAM01417c" name="calcitriol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H44O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01417c">
+            <rdf:Description rdf:about="#M_MAM01417c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/1a25dhvitd3"/>
@@ -36023,10 +36022,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01417m" sboTerm="SBO:0000247" id="MAM01417m" name="calcitriol" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H44O3">
+      <species metaid="M_MAM01417m" sboTerm="SBO:0000247" id="M_MAM01417m" name="calcitriol" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H44O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01417m">
+            <rdf:Description rdf:about="#M_MAM01417m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/1a25dhvitd3"/>
@@ -36045,10 +36044,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01418c" sboTerm="SBO:0000247" id="MAM01418c" name="calcitroic acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C23H33O4">
+      <species metaid="M_MAM01418c" sboTerm="SBO:0000247" id="M_MAM01418c" name="calcitroic acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C23H33O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01418c">
+            <rdf:Description rdf:about="#M_MAM01418c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/cca_d3"/>
@@ -36062,10 +36061,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01418m" sboTerm="SBO:0000247" id="MAM01418m" name="calcitroic acid" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C23H33O4">
+      <species metaid="M_MAM01418m" sboTerm="SBO:0000247" id="M_MAM01418m" name="calcitroic acid" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C23H33O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01418m">
+            <rdf:Description rdf:about="#M_MAM01418m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/cca_d3"/>
@@ -36079,10 +36078,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01418e" sboTerm="SBO:0000247" id="MAM01418e" name="calcitroic acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C23H33O4">
+      <species metaid="M_MAM01418e" sboTerm="SBO:0000247" id="M_MAM01418e" name="calcitroic acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C23H33O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01418e">
+            <rdf:Description rdf:about="#M_MAM01418e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/cca_d3"/>
@@ -36096,10 +36095,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01419c" sboTerm="SBO:0000247" id="MAM01419c" name="cAMP" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H11N5O6P">
+      <species metaid="M_MAM01419c" sboTerm="SBO:0000247" id="M_MAM01419c" name="cAMP" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H11N5O6P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01419c">
+            <rdf:Description rdf:about="#M_MAM01419c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/camp"/>
@@ -36115,10 +36114,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01419g" sboTerm="SBO:0000247" id="MAM01419g" name="cAMP" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H11N5O6P">
+      <species metaid="M_MAM01419g" sboTerm="SBO:0000247" id="M_MAM01419g" name="cAMP" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H11N5O6P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01419g">
+            <rdf:Description rdf:about="#M_MAM01419g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/camp"/>
@@ -36134,10 +36133,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01419e" sboTerm="SBO:0000247" id="MAM01419e" name="cAMP" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H11N5O6P">
+      <species metaid="M_MAM01419e" sboTerm="SBO:0000247" id="M_MAM01419e" name="cAMP" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H11N5O6P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01419e">
+            <rdf:Description rdf:about="#M_MAM01419e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/camp"/>
@@ -36153,10 +36152,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01420c" sboTerm="SBO:0000247" id="MAM01420c" name="carbamoyl-phosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="CH2NO5P">
+      <species metaid="M_MAM01420c" sboTerm="SBO:0000247" id="M_MAM01420c" name="carbamoyl-phosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="CH2NO5P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01420c">
+            <rdf:Description rdf:about="#M_MAM01420c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/cbp"/>
@@ -36171,10 +36170,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01420r" sboTerm="SBO:0000247" id="MAM01420r" name="carbamoyl-phosphate" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="CH2NO5P">
+      <species metaid="M_MAM01420r" sboTerm="SBO:0000247" id="M_MAM01420r" name="carbamoyl-phosphate" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="CH2NO5P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01420r">
+            <rdf:Description rdf:about="#M_MAM01420r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/cbp"/>
@@ -36189,10 +36188,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01421c" sboTerm="SBO:0000247" id="MAM01421c" name="carbonate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="CH2O3">
+      <species metaid="M_MAM01421c" sboTerm="SBO:0000247" id="M_MAM01421c" name="carbonate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="CH2O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01421c">
+            <rdf:Description rdf:about="#M_MAM01421c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/h2co3"/>
@@ -36206,10 +36205,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01421m" sboTerm="SBO:0000247" id="MAM01421m" name="carbonate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="CH2O3">
+      <species metaid="M_MAM01421m" sboTerm="SBO:0000247" id="M_MAM01421m" name="carbonate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="CH2O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01421m">
+            <rdf:Description rdf:about="#M_MAM01421m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/h2co3"/>
@@ -36223,10 +36222,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01421e" sboTerm="SBO:0000247" id="MAM01421e" name="carbonate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="CH2O3">
+      <species metaid="M_MAM01421e" sboTerm="SBO:0000247" id="M_MAM01421e" name="carbonate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="CH2O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01421e">
+            <rdf:Description rdf:about="#M_MAM01421e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/h2co3"/>
@@ -36240,10 +36239,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01422c" sboTerm="SBO:0000247" id="MAM01422c" name="carboxybiotin-carboxyl-carrier" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C17H26N4O5SX">
+      <species metaid="M_MAM01422c" sboTerm="SBO:0000247" id="M_MAM01422c" name="carboxybiotin-carboxyl-carrier" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C17H26N4O5SX">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01422c">
+            <rdf:Description rdf:about="#M_MAM01422c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/cbtnCCP"/>
@@ -36255,10 +36254,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01423c" sboTerm="SBO:0000247" id="MAM01423c" name="carnosine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H14N4O3">
+      <species metaid="M_MAM01423c" sboTerm="SBO:0000247" id="M_MAM01423c" name="carnosine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H14N4O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01423c">
+            <rdf:Description rdf:about="#M_MAM01423c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/carn"/>
@@ -36276,10 +36275,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01424c" sboTerm="SBO:0000247" id="MAM01424c" name="CDP" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C9H12N3O11P2">
+      <species metaid="M_MAM01424c" sboTerm="SBO:0000247" id="M_MAM01424c" name="CDP" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C9H12N3O11P2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01424c">
+            <rdf:Description rdf:about="#M_MAM01424c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/cdp"/>
@@ -36294,10 +36293,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01424m" sboTerm="SBO:0000247" id="MAM01424m" name="CDP" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C9H12N3O11P2">
+      <species metaid="M_MAM01424m" sboTerm="SBO:0000247" id="M_MAM01424m" name="CDP" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C9H12N3O11P2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01424m">
+            <rdf:Description rdf:about="#M_MAM01424m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/cdp"/>
@@ -36312,10 +36311,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01424n" sboTerm="SBO:0000247" id="MAM01424n" name="CDP" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C9H12N3O11P2">
+      <species metaid="M_MAM01424n" sboTerm="SBO:0000247" id="M_MAM01424n" name="CDP" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C9H12N3O11P2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01424n">
+            <rdf:Description rdf:about="#M_MAM01424n">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/cdp"/>
@@ -36330,10 +36329,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01424e" sboTerm="SBO:0000247" id="MAM01424e" name="CDP" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C9H12N3O11P2">
+      <species metaid="M_MAM01424e" sboTerm="SBO:0000247" id="M_MAM01424e" name="CDP" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C9H12N3O11P2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01424e">
+            <rdf:Description rdf:about="#M_MAM01424e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/cdp"/>
@@ -36348,10 +36347,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01425c" sboTerm="SBO:0000247" id="MAM01425c" name="CDP-choline" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C14H25N4O11P2">
+      <species metaid="M_MAM01425c" sboTerm="SBO:0000247" id="M_MAM01425c" name="CDP-choline" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C14H25N4O11P2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01425c">
+            <rdf:Description rdf:about="#M_MAM01425c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/cdpchol"/>
@@ -36366,10 +36365,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01425r" sboTerm="SBO:0000247" id="MAM01425r" name="CDP-choline" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C14H25N4O11P2">
+      <species metaid="M_MAM01425r" sboTerm="SBO:0000247" id="M_MAM01425r" name="CDP-choline" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C14H25N4O11P2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01425r">
+            <rdf:Description rdf:about="#M_MAM01425r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/cdpchol"/>
@@ -36384,10 +36383,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01426m" sboTerm="SBO:0000247" id="MAM01426m" name="CDP-diacylglycerol-CL pool" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C14H17N3O15P2R2">
+      <species metaid="M_MAM01426m" sboTerm="SBO:0000247" id="M_MAM01426m" name="CDP-diacylglycerol-CL pool" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C14H17N3O15P2R2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01426m">
+            <rdf:Description rdf:about="#M_MAM01426m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C00269"/>
@@ -36399,10 +36398,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01427c" sboTerm="SBO:0000247" id="MAM01427c" name="CDP-diacylglycerol-LD-PI pool" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C14H17N3O15P2R2">
+      <species metaid="M_MAM01427c" sboTerm="SBO:0000247" id="M_MAM01427c" name="CDP-diacylglycerol-LD-PI pool" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C14H17N3O15P2R2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01427c">
+            <rdf:Description rdf:about="#M_MAM01427c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/cdpdag_hs"/>
@@ -36416,10 +36415,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01427l" sboTerm="SBO:0000247" id="MAM01427l" name="CDP-diacylglycerol-LD-PI pool" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C14H17N3O15P2R2">
+      <species metaid="M_MAM01427l" sboTerm="SBO:0000247" id="M_MAM01427l" name="CDP-diacylglycerol-LD-PI pool" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C14H17N3O15P2R2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01427l">
+            <rdf:Description rdf:about="#M_MAM01427l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/cdpdag_hs"/>
@@ -36433,10 +36432,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01427r" sboTerm="SBO:0000247" id="MAM01427r" name="CDP-diacylglycerol-LD-PI pool" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C14H17N3O15P2R2">
+      <species metaid="M_MAM01427r" sboTerm="SBO:0000247" id="M_MAM01427r" name="CDP-diacylglycerol-LD-PI pool" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C14H17N3O15P2R2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01427r">
+            <rdf:Description rdf:about="#M_MAM01427r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/cdpdag_hs"/>
@@ -36450,10 +36449,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01428c" sboTerm="SBO:0000247" id="MAM01428c" name="CDP-ethanolamine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C11H19N4O11P2">
+      <species metaid="M_MAM01428c" sboTerm="SBO:0000247" id="M_MAM01428c" name="CDP-ethanolamine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C11H19N4O11P2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01428c">
+            <rdf:Description rdf:about="#M_MAM01428c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/cdpea"/>
@@ -36469,10 +36468,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01428g" sboTerm="SBO:0000247" id="MAM01428g" name="CDP-ethanolamine" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C11H19N4O11P2">
+      <species metaid="M_MAM01428g" sboTerm="SBO:0000247" id="M_MAM01428g" name="CDP-ethanolamine" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C11H19N4O11P2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01428g">
+            <rdf:Description rdf:about="#M_MAM01428g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/cdpea"/>
@@ -36488,10 +36487,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01430c" sboTerm="SBO:0000247" id="MAM01430c" name="ceramide pool" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H36NO2RCO">
+      <species metaid="M_MAM01430c" sboTerm="SBO:0000247" id="M_MAM01430c" name="ceramide pool" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H36NO2RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01430c">
+            <rdf:Description rdf:about="#M_MAM01430c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/crm_hs"/>
@@ -36506,10 +36505,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01430g" sboTerm="SBO:0000247" id="MAM01430g" name="ceramide pool" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H36NO2RCO">
+      <species metaid="M_MAM01430g" sboTerm="SBO:0000247" id="M_MAM01430g" name="ceramide pool" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H36NO2RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01430g">
+            <rdf:Description rdf:about="#M_MAM01430g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/crm_hs"/>
@@ -36524,10 +36523,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01430l" sboTerm="SBO:0000247" id="MAM01430l" name="ceramide pool" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H36NO2RCO">
+      <species metaid="M_MAM01430l" sboTerm="SBO:0000247" id="M_MAM01430l" name="ceramide pool" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H36NO2RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01430l">
+            <rdf:Description rdf:about="#M_MAM01430l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/crm_hs"/>
@@ -36542,10 +36541,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01430r" sboTerm="SBO:0000247" id="MAM01430r" name="ceramide pool" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H36NO2RCO">
+      <species metaid="M_MAM01430r" sboTerm="SBO:0000247" id="M_MAM01430r" name="ceramide pool" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H36NO2RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01430r">
+            <rdf:Description rdf:about="#M_MAM01430r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/crm_hs"/>
@@ -36560,10 +36559,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01431c" sboTerm="SBO:0000247" id="MAM01431c" name="ceramide-1P pool" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C18H35NO5PRCO">
+      <species metaid="M_MAM01431c" sboTerm="SBO:0000247" id="M_MAM01431c" name="ceramide-1P pool" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C18H35NO5PRCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01431c">
+            <rdf:Description rdf:about="#M_MAM01431c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/crmp_hs"/>
@@ -36575,10 +36574,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01432c" sboTerm="SBO:0000247" id="MAM01432c" name="cerotic acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C26H51O2">
+      <species metaid="M_MAM01432c" sboTerm="SBO:0000247" id="M_MAM01432c" name="cerotic acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C26H51O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01432c">
+            <rdf:Description rdf:about="#M_MAM01432c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hexc"/>
@@ -36595,10 +36594,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01432l" sboTerm="SBO:0000247" id="MAM01432l" name="cerotic acid" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C26H51O2">
+      <species metaid="M_MAM01432l" sboTerm="SBO:0000247" id="M_MAM01432l" name="cerotic acid" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C26H51O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01432l">
+            <rdf:Description rdf:about="#M_MAM01432l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hexc"/>
@@ -36615,10 +36614,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01432r" sboTerm="SBO:0000247" id="MAM01432r" name="cerotic acid" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C26H51O2">
+      <species metaid="M_MAM01432r" sboTerm="SBO:0000247" id="M_MAM01432r" name="cerotic acid" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C26H51O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01432r">
+            <rdf:Description rdf:about="#M_MAM01432r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hexc"/>
@@ -36635,10 +36634,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01432e" sboTerm="SBO:0000247" id="MAM01432e" name="cerotic acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C26H51O2">
+      <species metaid="M_MAM01432e" sboTerm="SBO:0000247" id="M_MAM01432e" name="cerotic acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C26H51O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01432e">
+            <rdf:Description rdf:about="#M_MAM01432e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hexc"/>
@@ -36655,10 +36654,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01433c" sboTerm="SBO:0000247" id="MAM01433c" name="cGMP" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H11N5O7P">
+      <species metaid="M_MAM01433c" sboTerm="SBO:0000247" id="M_MAM01433c" name="cGMP" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H11N5O7P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01433c">
+            <rdf:Description rdf:about="#M_MAM01433c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/35cgmp"/>
@@ -36674,10 +36673,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01433g" sboTerm="SBO:0000247" id="MAM01433g" name="cGMP" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H11N5O7P">
+      <species metaid="M_MAM01433g" sboTerm="SBO:0000247" id="M_MAM01433g" name="cGMP" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H11N5O7P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01433g">
+            <rdf:Description rdf:about="#M_MAM01433g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/35cgmp"/>
@@ -36693,10 +36692,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01433n" sboTerm="SBO:0000247" id="MAM01433n" name="cGMP" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H11N5O7P">
+      <species metaid="M_MAM01433n" sboTerm="SBO:0000247" id="M_MAM01433n" name="cGMP" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H11N5O7P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01433n">
+            <rdf:Description rdf:about="#M_MAM01433n">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/35cgmp"/>
@@ -36712,10 +36711,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01433e" sboTerm="SBO:0000247" id="MAM01433e" name="cGMP" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H11N5O7P">
+      <species metaid="M_MAM01433e" sboTerm="SBO:0000247" id="M_MAM01433e" name="cGMP" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H11N5O7P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01433e">
+            <rdf:Description rdf:about="#M_MAM01433e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/35cgmp"/>
@@ -36731,10 +36730,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01434c" sboTerm="SBO:0000247" id="MAM01434c" name="chenodeoxycholoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C45H70N7O19P3S">
+      <species metaid="M_MAM01434c" sboTerm="SBO:0000247" id="M_MAM01434c" name="chenodeoxycholoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C45H70N7O19P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01434c">
+            <rdf:Description rdf:about="#M_MAM01434c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dcholcoa"/>
@@ -36750,10 +36749,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01434x" sboTerm="SBO:0000247" id="MAM01434x" name="chenodeoxycholoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C45H70N7O19P3S">
+      <species metaid="M_MAM01434x" sboTerm="SBO:0000247" id="M_MAM01434x" name="chenodeoxycholoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C45H70N7O19P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01434x">
+            <rdf:Description rdf:about="#M_MAM01434x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dcholcoa"/>
@@ -36769,10 +36768,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01434r" sboTerm="SBO:0000247" id="MAM01434r" name="chenodeoxycholoyl-CoA" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C45H70N7O19P3S">
+      <species metaid="M_MAM01434r" sboTerm="SBO:0000247" id="M_MAM01434r" name="chenodeoxycholoyl-CoA" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C45H70N7O19P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01434r">
+            <rdf:Description rdf:about="#M_MAM01434r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dcholcoa"/>
@@ -36788,10 +36787,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01435c" sboTerm="SBO:0000247" id="MAM01435c" name="chenodiol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H39O4">
+      <species metaid="M_MAM01435c" sboTerm="SBO:0000247" id="M_MAM01435c" name="chenodiol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H39O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01435c">
+            <rdf:Description rdf:about="#M_MAM01435c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:16755"/>
@@ -36807,10 +36806,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01435r" sboTerm="SBO:0000247" id="MAM01435r" name="chenodiol" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H39O4">
+      <species metaid="M_MAM01435r" sboTerm="SBO:0000247" id="M_MAM01435r" name="chenodiol" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H39O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01435r">
+            <rdf:Description rdf:about="#M_MAM01435r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:16755"/>
@@ -36826,10 +36825,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01435e" sboTerm="SBO:0000247" id="MAM01435e" name="chenodiol" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H39O4">
+      <species metaid="M_MAM01435e" sboTerm="SBO:0000247" id="M_MAM01435e" name="chenodiol" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H39O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01435e">
+            <rdf:Description rdf:about="#M_MAM01435e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:16755"/>
@@ -36845,10 +36844,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01436c" sboTerm="SBO:0000247" id="MAM01436c" name="chitin(n-1)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C16H28N2O11">
+      <species metaid="M_MAM01436c" sboTerm="SBO:0000247" id="M_MAM01436c" name="chitin(n-1)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C16H28N2O11">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01436c">
+            <rdf:Description rdf:about="#M_MAM01436c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:17029"/>
@@ -36862,10 +36861,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01437c" sboTerm="SBO:0000247" id="MAM01437c" name="chitin" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C24H41N3O16">
+      <species metaid="M_MAM01437c" sboTerm="SBO:0000247" id="M_MAM01437c" name="chitin" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C24H41N3O16">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01437c">
+            <rdf:Description rdf:about="#M_MAM01437c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:17029"/>
@@ -36879,10 +36878,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01438c" sboTerm="SBO:0000247" id="MAM01438c" name="chitin-component" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H13NO5">
+      <species metaid="M_MAM01438c" sboTerm="SBO:0000247" id="M_MAM01438c" name="chitin-component" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H13NO5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01438c">
+            <rdf:Description rdf:about="#M_MAM01438c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/chtn"/>
@@ -36894,10 +36893,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01438e" sboTerm="SBO:0000247" id="MAM01438e" name="chitin-component" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H13NO5">
+      <species metaid="M_MAM01438e" sboTerm="SBO:0000247" id="M_MAM01438e" name="chitin-component" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H13NO5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01438e">
+            <rdf:Description rdf:about="#M_MAM01438e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/chtn"/>
@@ -36909,10 +36908,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01439l" sboTerm="SBO:0000247" id="MAM01439l" name="chitobiose" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C16H28N2O11">
+      <species metaid="M_MAM01439l" sboTerm="SBO:0000247" id="M_MAM01439l" name="chitobiose" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C16H28N2O11">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01439l">
+            <rdf:Description rdf:about="#M_MAM01439l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C01674"/>
@@ -36926,10 +36925,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01439e" sboTerm="SBO:0000247" id="MAM01439e" name="chitobiose" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C16H28N2O11">
+      <species metaid="M_MAM01439e" sboTerm="SBO:0000247" id="M_MAM01439e" name="chitobiose" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C16H28N2O11">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01439e">
+            <rdf:Description rdf:about="#M_MAM01439e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C01674"/>
@@ -36943,10 +36942,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01440c" sboTerm="SBO:0000247" id="MAM01440c" name="chloral hydrate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C2H3Cl3O2">
+      <species metaid="M_MAM01440c" sboTerm="SBO:0000247" id="M_MAM01440c" name="chloral hydrate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C2H3Cl3O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01440c">
+            <rdf:Description rdf:about="#M_MAM01440c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:28142"/>
@@ -36959,10 +36958,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01441c" sboTerm="SBO:0000247" id="MAM01441c" name="chloral" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C2HCl3O">
+      <species metaid="M_MAM01441c" sboTerm="SBO:0000247" id="M_MAM01441c" name="chloral" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C2HCl3O">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01441c">
+            <rdf:Description rdf:about="#M_MAM01441c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:48814"/>
@@ -36975,10 +36974,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01442c" sboTerm="SBO:0000247" id="MAM01442c" name="chloride" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="Cl">
+      <species metaid="M_MAM01442c" sboTerm="SBO:0000247" id="M_MAM01442c" name="chloride" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="Cl">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01442c">
+            <rdf:Description rdf:about="#M_MAM01442c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/cl"/>
@@ -36994,10 +36993,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01442e" sboTerm="SBO:0000247" id="MAM01442e" name="chloride" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="Cl">
+      <species metaid="M_MAM01442e" sboTerm="SBO:0000247" id="M_MAM01442e" name="chloride" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="Cl">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01442e">
+            <rdf:Description rdf:about="#M_MAM01442e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/cl"/>
@@ -37013,10 +37012,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01443c" sboTerm="SBO:0000247" id="MAM01443c" name="chloroacetic acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C2H2ClO2">
+      <species metaid="M_MAM01443c" sboTerm="SBO:0000247" id="M_MAM01443c" name="chloroacetic acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C2H2ClO2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01443c">
+            <rdf:Description rdf:about="#M_MAM01443c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:27869"/>
@@ -37029,10 +37028,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01444c" sboTerm="SBO:0000247" id="MAM01444c" name="chloroacetyl chloride" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C2H2Cl2O">
+      <species metaid="M_MAM01444c" sboTerm="SBO:0000247" id="M_MAM01444c" name="chloroacetyl chloride" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C2H2Cl2O">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01444c">
+            <rdf:Description rdf:about="#M_MAM01444c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C14859"/>
@@ -37044,10 +37043,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01445c" sboTerm="SBO:0000247" id="MAM01445c" name="cholate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H39O5">
+      <species metaid="M_MAM01445c" sboTerm="SBO:0000247" id="M_MAM01445c" name="cholate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H39O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01445c">
+            <rdf:Description rdf:about="#M_MAM01445c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/cholate"/>
@@ -37064,10 +37063,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01445m" sboTerm="SBO:0000247" id="MAM01445m" name="cholate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H39O5">
+      <species metaid="M_MAM01445m" sboTerm="SBO:0000247" id="M_MAM01445m" name="cholate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H39O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01445m">
+            <rdf:Description rdf:about="#M_MAM01445m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/cholate"/>
@@ -37084,10 +37083,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01445x" sboTerm="SBO:0000247" id="MAM01445x" name="cholate" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H39O5">
+      <species metaid="M_MAM01445x" sboTerm="SBO:0000247" id="M_MAM01445x" name="cholate" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H39O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01445x">
+            <rdf:Description rdf:about="#M_MAM01445x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/cholate"/>
@@ -37104,10 +37103,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01445r" sboTerm="SBO:0000247" id="MAM01445r" name="cholate" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H39O5">
+      <species metaid="M_MAM01445r" sboTerm="SBO:0000247" id="M_MAM01445r" name="cholate" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H39O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01445r">
+            <rdf:Description rdf:about="#M_MAM01445r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/cholate"/>
@@ -37124,10 +37123,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01445e" sboTerm="SBO:0000247" id="MAM01445e" name="cholate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H39O5">
+      <species metaid="M_MAM01445e" sboTerm="SBO:0000247" id="M_MAM01445e" name="cholate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H39O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01445e">
+            <rdf:Description rdf:about="#M_MAM01445e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/cholate"/>
@@ -37144,10 +37143,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01446c" sboTerm="SBO:0000247" id="MAM01446c" name="cholest-5-ene-3beta,7alpha,24(S)-triol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H46O3">
+      <species metaid="M_MAM01446c" sboTerm="SBO:0000247" id="M_MAM01446c" name="cholest-5-ene-3beta,7alpha,24(S)-triol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H46O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01446c">
+            <rdf:Description rdf:about="#M_MAM01446c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/xoltri24"/>
@@ -37163,10 +37162,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01447r" sboTerm="SBO:0000247" id="MAM01447r" name="cholest-5-ene-3beta,7alpha,25-triol" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H46O3">
+      <species metaid="M_MAM01447r" sboTerm="SBO:0000247" id="M_MAM01447r" name="cholest-5-ene-3beta,7alpha,25-triol" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H46O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01447r">
+            <rdf:Description rdf:about="#M_MAM01447r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/xoltri25"/>
@@ -37182,10 +37181,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01448c" sboTerm="SBO:0000247" id="MAM01448c" name="cholest-5-ene-3beta,7alpha,27-triol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H46O3">
+      <species metaid="M_MAM01448c" sboTerm="SBO:0000247" id="M_MAM01448c" name="cholest-5-ene-3beta,7alpha,27-triol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H46O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01448c">
+            <rdf:Description rdf:about="#M_MAM01448c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/xoltri27"/>
@@ -37205,10 +37204,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01448m" sboTerm="SBO:0000247" id="MAM01448m" name="cholest-5-ene-3beta,7alpha,27-triol" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H46O3">
+      <species metaid="M_MAM01448m" sboTerm="SBO:0000247" id="M_MAM01448m" name="cholest-5-ene-3beta,7alpha,27-triol" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H46O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01448m">
+            <rdf:Description rdf:about="#M_MAM01448m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/xoltri27"/>
@@ -37228,10 +37227,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01450c" sboTerm="SBO:0000247" id="MAM01450c" name="cholesterol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H46O">
+      <species metaid="M_MAM01450c" sboTerm="SBO:0000247" id="M_MAM01450c" name="cholesterol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H46O">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01450c">
+            <rdf:Description rdf:about="#M_MAM01450c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/chsterol"/>
@@ -37249,10 +37248,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01450g" sboTerm="SBO:0000247" id="MAM01450g" name="cholesterol" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H46O">
+      <species metaid="M_MAM01450g" sboTerm="SBO:0000247" id="M_MAM01450g" name="cholesterol" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H46O">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01450g">
+            <rdf:Description rdf:about="#M_MAM01450g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/chsterol"/>
@@ -37270,10 +37269,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01450l" sboTerm="SBO:0000247" id="MAM01450l" name="cholesterol" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H46O">
+      <species metaid="M_MAM01450l" sboTerm="SBO:0000247" id="M_MAM01450l" name="cholesterol" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H46O">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01450l">
+            <rdf:Description rdf:about="#M_MAM01450l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/chsterol"/>
@@ -37291,10 +37290,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01450m" sboTerm="SBO:0000247" id="MAM01450m" name="cholesterol" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H46O">
+      <species metaid="M_MAM01450m" sboTerm="SBO:0000247" id="M_MAM01450m" name="cholesterol" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H46O">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01450m">
+            <rdf:Description rdf:about="#M_MAM01450m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/chsterol"/>
@@ -37312,10 +37311,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01450r" sboTerm="SBO:0000247" id="MAM01450r" name="cholesterol" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H46O">
+      <species metaid="M_MAM01450r" sboTerm="SBO:0000247" id="M_MAM01450r" name="cholesterol" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H46O">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01450r">
+            <rdf:Description rdf:about="#M_MAM01450r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/chsterol"/>
@@ -37333,10 +37332,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01450e" sboTerm="SBO:0000247" id="MAM01450e" name="cholesterol" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H46O">
+      <species metaid="M_MAM01450e" sboTerm="SBO:0000247" id="M_MAM01450e" name="cholesterol" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H46O">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01450e">
+            <rdf:Description rdf:about="#M_MAM01450e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/chsterol"/>
@@ -37354,10 +37353,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01451c" sboTerm="SBO:0000247" id="MAM01451c" name="cholesterol-ester pool" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C28H45O2R">
+      <species metaid="M_MAM01451c" sboTerm="SBO:0000247" id="M_MAM01451c" name="cholesterol-ester pool" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C28H45O2R">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01451c">
+            <rdf:Description rdf:about="#M_MAM01451c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/xolest2_hs"/>
@@ -37371,10 +37370,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01451l" sboTerm="SBO:0000247" id="MAM01451l" name="cholesterol-ester pool" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C28H45O2R">
+      <species metaid="M_MAM01451l" sboTerm="SBO:0000247" id="M_MAM01451l" name="cholesterol-ester pool" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C28H45O2R">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01451l">
+            <rdf:Description rdf:about="#M_MAM01451l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/xolest2_hs"/>
@@ -37388,10 +37387,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01451r" sboTerm="SBO:0000247" id="MAM01451r" name="cholesterol-ester pool" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C28H45O2R">
+      <species metaid="M_MAM01451r" sboTerm="SBO:0000247" id="M_MAM01451r" name="cholesterol-ester pool" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C28H45O2R">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01451r">
+            <rdf:Description rdf:about="#M_MAM01451r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/xolest2_hs"/>
@@ -37405,10 +37404,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01451e" sboTerm="SBO:0000247" id="MAM01451e" name="cholesterol-ester pool" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C28H45O2R">
+      <species metaid="M_MAM01451e" sboTerm="SBO:0000247" id="M_MAM01451e" name="cholesterol-ester pool" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C28H45O2R">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01451e">
+            <rdf:Description rdf:about="#M_MAM01451e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/xolest2_hs"/>
@@ -37422,10 +37421,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01452l" sboTerm="SBO:0000247" id="MAM01452l" name="cholesterol-ester-10,13,16,19-docosa" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C49H80O2">
+      <species metaid="M_MAM01452l" sboTerm="SBO:0000247" id="M_MAM01452l" name="cholesterol-ester-10,13,16,19-docosa" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C49H80O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01452l">
+            <rdf:Description rdf:about="#M_MAM01452l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M01452"/>
@@ -37435,10 +37434,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01452r" sboTerm="SBO:0000247" id="MAM01452r" name="cholesterol-ester-10,13,16,19-docosa" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C49H80O2">
+      <species metaid="M_MAM01452r" sboTerm="SBO:0000247" id="M_MAM01452r" name="cholesterol-ester-10,13,16,19-docosa" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C49H80O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01452r">
+            <rdf:Description rdf:about="#M_MAM01452r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M01452"/>
@@ -37448,10 +37447,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01453l" sboTerm="SBO:0000247" id="MAM01453l" name="cholesterol-ester-10,13,16-docosa" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C49H82O2">
+      <species metaid="M_MAM01453l" sboTerm="SBO:0000247" id="M_MAM01453l" name="cholesterol-ester-10,13,16-docosa" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C49H82O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01453l">
+            <rdf:Description rdf:about="#M_MAM01453l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M01453"/>
@@ -37461,10 +37460,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM01453r" sboTerm="SBO:0000247" id="MAM01453r" name="cholesterol-ester-10,13,16-docosa" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C49H82O2">
+      <species metaid="M_MAM01453r" sboTerm="SBO:0000247" id="M_MAM01453r" name="cholesterol-ester-10,13,16-docosa" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C49H82O2">
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-            <rdf:Description rdf:about="#MAM01453r">
+            <rdf:Description rdf:about="#M_MAM01453r">
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@@ -37474,10 +37473,10 @@
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+      <species metaid="M_MAM01454l" sboTerm="SBO:0000247" id="M_MAM01454l" name="cholesterol-ester-10-hepta" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C44H76O2">
         <annotation>
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-            <rdf:Description rdf:about="#MAM01454l">
+            <rdf:Description rdf:about="#M_MAM01454l">
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@@ -37489,10 +37488,10 @@
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+      <species metaid="M_MAM01454r" sboTerm="SBO:0000247" id="M_MAM01454r" name="cholesterol-ester-10-hepta" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C44H76O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01454r">
+            <rdf:Description rdf:about="#M_MAM01454r">
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@@ -37504,10 +37503,10 @@
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-      <species metaid="MAM01455l" sboTerm="SBO:0000247" id="MAM01455l" name="cholesterol-ester-11,14,17-eico" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C47H78O2">
+      <species metaid="M_MAM01455l" sboTerm="SBO:0000247" id="M_MAM01455l" name="cholesterol-ester-11,14,17-eico" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C47H78O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01455l">
+            <rdf:Description rdf:about="#M_MAM01455l">
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@@ -37517,10 +37516,10 @@
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-      <species metaid="MAM01455r" sboTerm="SBO:0000247" id="MAM01455r" name="cholesterol-ester-11,14,17-eico" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C47H78O2">
+      <species metaid="M_MAM01455r" sboTerm="SBO:0000247" id="M_MAM01455r" name="cholesterol-ester-11,14,17-eico" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C47H78O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01455r">
+            <rdf:Description rdf:about="#M_MAM01455r">
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@@ -37530,10 +37529,10 @@
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-      <species metaid="MAM01456l" sboTerm="SBO:0000247" id="MAM01456l" name="cholesterol-ester-11,14-eicosa" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C47H80O2">
+      <species metaid="M_MAM01456l" sboTerm="SBO:0000247" id="M_MAM01456l" name="cholesterol-ester-11,14-eicosa" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C47H80O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01456l">
+            <rdf:Description rdf:about="#M_MAM01456l">
               <bqbiol:is>
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                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/LMST01020012"/>
@@ -37545,10 +37544,10 @@
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-      <species metaid="MAM01456r" sboTerm="SBO:0000247" id="MAM01456r" name="cholesterol-ester-11,14-eicosa" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C47H80O2">
+      <species metaid="M_MAM01456r" sboTerm="SBO:0000247" id="M_MAM01456r" name="cholesterol-ester-11,14-eicosa" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C47H80O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01456r">
+            <rdf:Description rdf:about="#M_MAM01456r">
               <bqbiol:is>
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                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/LMST01020012"/>
@@ -37560,10 +37559,10 @@
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-      <species metaid="MAM01457l" sboTerm="SBO:0000247" id="MAM01457l" name="cholesterol-ester-11-docose" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C49H86O2">
+      <species metaid="M_MAM01457l" sboTerm="SBO:0000247" id="M_MAM01457l" name="cholesterol-ester-11-docose" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C49H86O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01457l">
+            <rdf:Description rdf:about="#M_MAM01457l">
               <bqbiol:is>
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                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M01457"/>
@@ -37573,10 +37572,10 @@
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-      <species metaid="MAM01457r" sboTerm="SBO:0000247" id="MAM01457r" name="cholesterol-ester-11-docose" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C49H86O2">
+      <species metaid="M_MAM01457r" sboTerm="SBO:0000247" id="M_MAM01457r" name="cholesterol-ester-11-docose" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C49H86O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01457r">
+            <rdf:Description rdf:about="#M_MAM01457r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M01457"/>
@@ -37586,10 +37585,10 @@
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-      <species metaid="MAM01458l" sboTerm="SBO:0000247" id="MAM01458l" name="cholesterol-ester-11-eico" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C47H82O2">
+      <species metaid="M_MAM01458l" sboTerm="SBO:0000247" id="M_MAM01458l" name="cholesterol-ester-11-eico" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C47H82O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01458l">
+            <rdf:Description rdf:about="#M_MAM01458l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/LMST01020011"/>
@@ -37602,10 +37601,10 @@
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-      <species metaid="MAM01458r" sboTerm="SBO:0000247" id="MAM01458r" name="cholesterol-ester-11-eico" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C47H82O2">
+      <species metaid="M_MAM01458r" sboTerm="SBO:0000247" id="M_MAM01458r" name="cholesterol-ester-11-eico" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C47H82O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01458r">
+            <rdf:Description rdf:about="#M_MAM01458r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/LMST01020011"/>
@@ -37618,10 +37617,10 @@
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         </annotation>
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-      <species metaid="MAM01459l" sboTerm="SBO:0000247" id="MAM01459l" name="cholesterol-ester-12,15,18,21-tetracosa" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C51H84O2">
+      <species metaid="M_MAM01459l" sboTerm="SBO:0000247" id="M_MAM01459l" name="cholesterol-ester-12,15,18,21-tetracosa" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C51H84O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01459l">
+            <rdf:Description rdf:about="#M_MAM01459l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M01459"/>
@@ -37631,10 +37630,10 @@
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-      <species metaid="MAM01459r" sboTerm="SBO:0000247" id="MAM01459r" name="cholesterol-ester-12,15,18,21-tetracosa" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C51H84O2">
+      <species metaid="M_MAM01459r" sboTerm="SBO:0000247" id="M_MAM01459r" name="cholesterol-ester-12,15,18,21-tetracosa" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C51H84O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01459r">
+            <rdf:Description rdf:about="#M_MAM01459r">
               <bqbiol:is>
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                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M01459"/>
@@ -37644,10 +37643,10 @@
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-      <species metaid="MAM01460l" sboTerm="SBO:0000247" id="MAM01460l" name="cholesterol-ester-13,16,19-doco" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C49H82O2">
+      <species metaid="M_MAM01460l" sboTerm="SBO:0000247" id="M_MAM01460l" name="cholesterol-ester-13,16,19-doco" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C49H82O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01460l">
+            <rdf:Description rdf:about="#M_MAM01460l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M01460"/>
@@ -37657,10 +37656,10 @@
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-      <species metaid="MAM01460r" sboTerm="SBO:0000247" id="MAM01460r" name="cholesterol-ester-13,16,19-doco" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C49H82O2">
+      <species metaid="M_MAM01460r" sboTerm="SBO:0000247" id="M_MAM01460r" name="cholesterol-ester-13,16,19-doco" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C49H82O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01460r">
+            <rdf:Description rdf:about="#M_MAM01460r">
               <bqbiol:is>
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                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M01460"/>
@@ -37670,10 +37669,10 @@
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-      <species metaid="MAM01461l" sboTerm="SBO:0000247" id="MAM01461l" name="cholesterol-ester-13,16-docosa" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C49H84O2">
+      <species metaid="M_MAM01461l" sboTerm="SBO:0000247" id="M_MAM01461l" name="cholesterol-ester-13,16-docosa" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C49H84O2">
         <annotation>
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-            <rdf:Description rdf:about="#MAM01461l">
+            <rdf:Description rdf:about="#M_MAM01461l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/LMST01020017"/>
@@ -37686,10 +37685,10 @@
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-      <species metaid="MAM01461r" sboTerm="SBO:0000247" id="MAM01461r" name="cholesterol-ester-13,16-docosa" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C49H84O2">
+      <species metaid="M_MAM01461r" sboTerm="SBO:0000247" id="M_MAM01461r" name="cholesterol-ester-13,16-docosa" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C49H84O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01461r">
+            <rdf:Description rdf:about="#M_MAM01461r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/LMST01020017"/>
@@ -37702,10 +37701,10 @@
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+      <species metaid="M_MAM01462l" sboTerm="SBO:0000247" id="M_MAM01462l" name="cholesterol-ester-13-docose" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C49H86O2">
         <annotation>
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-            <rdf:Description rdf:about="#MAM01462l">
+            <rdf:Description rdf:about="#M_MAM01462l">
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@@ -37717,10 +37716,10 @@
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-      <species metaid="MAM01462r" sboTerm="SBO:0000247" id="MAM01462r" name="cholesterol-ester-13-docose" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C49H86O2">
+      <species metaid="M_MAM01462r" sboTerm="SBO:0000247" id="M_MAM01462r" name="cholesterol-ester-13-docose" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C49H86O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01462r">
+            <rdf:Description rdf:about="#M_MAM01462r">
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@@ -37732,10 +37731,10 @@
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-      <species metaid="MAM01463l" sboTerm="SBO:0000247" id="MAM01463l" name="cholesterol-ester-13-eicose" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C47H82O2">
+      <species metaid="M_MAM01463l" sboTerm="SBO:0000247" id="M_MAM01463l" name="cholesterol-ester-13-eicose" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C47H82O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01463l">
+            <rdf:Description rdf:about="#M_MAM01463l">
               <bqbiol:is>
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@@ -37745,10 +37744,10 @@
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-      <species metaid="MAM01463r" sboTerm="SBO:0000247" id="MAM01463r" name="cholesterol-ester-13-eicose" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C47H82O2">
+      <species metaid="M_MAM01463r" sboTerm="SBO:0000247" id="M_MAM01463r" name="cholesterol-ester-13-eicose" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C47H82O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01463r">
+            <rdf:Description rdf:about="#M_MAM01463r">
               <bqbiol:is>
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                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M01463"/>
@@ -37758,10 +37757,10 @@
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-      <species metaid="MAM01464l" sboTerm="SBO:0000247" id="MAM01464l" name="cholesterol-ester-13-octade" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C45H78O2">
+      <species metaid="M_MAM01464l" sboTerm="SBO:0000247" id="M_MAM01464l" name="cholesterol-ester-13-octade" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C45H78O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01464l">
+            <rdf:Description rdf:about="#M_MAM01464l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M01464"/>
@@ -37771,10 +37770,10 @@
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-      <species metaid="MAM01464r" sboTerm="SBO:0000247" id="MAM01464r" name="cholesterol-ester-13-octade" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C45H78O2">
+      <species metaid="M_MAM01464r" sboTerm="SBO:0000247" id="M_MAM01464r" name="cholesterol-ester-13-octade" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C45H78O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01464r">
+            <rdf:Description rdf:about="#M_MAM01464r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M01464"/>
@@ -37784,10 +37783,10 @@
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-      <species metaid="MAM01465l" sboTerm="SBO:0000247" id="MAM01465l" name="cholesterol-ester-15-tetra" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C51H90O2">
+      <species metaid="M_MAM01465l" sboTerm="SBO:0000247" id="M_MAM01465l" name="cholesterol-ester-15-tetra" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C51H90O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01465l">
+            <rdf:Description rdf:about="#M_MAM01465l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/LMST01020020"/>
@@ -37799,10 +37798,10 @@
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-      <species metaid="MAM01465r" sboTerm="SBO:0000247" id="MAM01465r" name="cholesterol-ester-15-tetra" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C51H90O2">
+      <species metaid="M_MAM01465r" sboTerm="SBO:0000247" id="M_MAM01465r" name="cholesterol-ester-15-tetra" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C51H90O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01465r">
+            <rdf:Description rdf:about="#M_MAM01465r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/LMST01020020"/>
@@ -37814,10 +37813,10 @@
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-      <species metaid="MAM01466l" sboTerm="SBO:0000247" id="MAM01466l" name="cholesterol-ester-4,7,10,13,16,19-doco" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C49H76O2">
+      <species metaid="M_MAM01466l" sboTerm="SBO:0000247" id="M_MAM01466l" name="cholesterol-ester-4,7,10,13,16,19-doco" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C49H76O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01466l">
+            <rdf:Description rdf:about="#M_MAM01466l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/LMST01020019"/>
@@ -37829,10 +37828,10 @@
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         </annotation>
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-      <species metaid="MAM01466r" sboTerm="SBO:0000247" id="MAM01466r" name="cholesterol-ester-4,7,10,13,16,19-doco" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C49H76O2">
+      <species metaid="M_MAM01466r" sboTerm="SBO:0000247" id="M_MAM01466r" name="cholesterol-ester-4,7,10,13,16,19-doco" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C49H76O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01466r">
+            <rdf:Description rdf:about="#M_MAM01466r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/LMST01020019"/>
@@ -37844,10 +37843,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01467l" sboTerm="SBO:0000247" id="MAM01467l" name="cholesterol-ester-4,7,10,13,16-docosa" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C49H78O2">
+      <species metaid="M_MAM01467l" sboTerm="SBO:0000247" id="M_MAM01467l" name="cholesterol-ester-4,7,10,13,16-docosa" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C49H78O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01467l">
+            <rdf:Description rdf:about="#M_MAM01467l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M01467"/>
@@ -37857,10 +37856,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM01467r" sboTerm="SBO:0000247" id="MAM01467r" name="cholesterol-ester-4,7,10,13,16-docosa" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C49H78O2">
+      <species metaid="M_MAM01467r" sboTerm="SBO:0000247" id="M_MAM01467r" name="cholesterol-ester-4,7,10,13,16-docosa" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C49H78O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01467r">
+            <rdf:Description rdf:about="#M_MAM01467r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M01467"/>
@@ -37870,10 +37869,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM01468l" sboTerm="SBO:0000247" id="MAM01468l" name="cholesterol-ester-5,8,11,14,17-eico" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C47H74O2">
+      <species metaid="M_MAM01468l" sboTerm="SBO:0000247" id="M_MAM01468l" name="cholesterol-ester-5,8,11,14,17-eico" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C47H74O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01468l">
+            <rdf:Description rdf:about="#M_MAM01468l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/LMST01020015"/>
@@ -37885,10 +37884,10 @@
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         </annotation>
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-      <species metaid="MAM01468r" sboTerm="SBO:0000247" id="MAM01468r" name="cholesterol-ester-5,8,11,14,17-eico" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C47H74O2">
+      <species metaid="M_MAM01468r" sboTerm="SBO:0000247" id="M_MAM01468r" name="cholesterol-ester-5,8,11,14,17-eico" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C47H74O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01468r">
+            <rdf:Description rdf:about="#M_MAM01468r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/LMST01020015"/>
@@ -37900,10 +37899,10 @@
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-      <species metaid="MAM01469l" sboTerm="SBO:0000247" id="MAM01469l" name="cholesterol-ester-5,8,11-eico" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C47H78O2">
+      <species metaid="M_MAM01469l" sboTerm="SBO:0000247" id="M_MAM01469l" name="cholesterol-ester-5,8,11-eico" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C47H78O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01469l">
+            <rdf:Description rdf:about="#M_MAM01469l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M01469"/>
@@ -37913,10 +37912,10 @@
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-      <species metaid="MAM01469r" sboTerm="SBO:0000247" id="MAM01469r" name="cholesterol-ester-5,8,11-eico" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C47H78O2">
+      <species metaid="M_MAM01469r" sboTerm="SBO:0000247" id="M_MAM01469r" name="cholesterol-ester-5,8,11-eico" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C47H78O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01469r">
+            <rdf:Description rdf:about="#M_MAM01469r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M01469"/>
@@ -37926,10 +37925,10 @@
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-      <species metaid="MAM01470l" sboTerm="SBO:0000247" id="MAM01470l" name="cholesterol-ester-5-tetra" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C41H70O2">
+      <species metaid="M_MAM01470l" sboTerm="SBO:0000247" id="M_MAM01470l" name="cholesterol-ester-5-tetra" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C41H70O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01470l">
+            <rdf:Description rdf:about="#M_MAM01470l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M01470"/>
@@ -37939,10 +37938,10 @@
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-      <species metaid="MAM01470r" sboTerm="SBO:0000247" id="MAM01470r" name="cholesterol-ester-5-tetra" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C41H70O2">
+      <species metaid="M_MAM01470r" sboTerm="SBO:0000247" id="M_MAM01470r" name="cholesterol-ester-5-tetra" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C41H70O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01470r">
+            <rdf:Description rdf:about="#M_MAM01470r">
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@@ -37952,10 +37951,10 @@
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-      <species metaid="MAM01471l" sboTerm="SBO:0000247" id="MAM01471l" name="cholesterol-ester-6,9,12,15,18,21-tetra" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C51H80O2">
+      <species metaid="M_MAM01471l" sboTerm="SBO:0000247" id="M_MAM01471l" name="cholesterol-ester-6,9,12,15,18,21-tetra" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C51H80O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01471l">
+            <rdf:Description rdf:about="#M_MAM01471l">
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@@ -37965,10 +37964,10 @@
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+      <species metaid="M_MAM01471r" sboTerm="SBO:0000247" id="M_MAM01471r" name="cholesterol-ester-6,9,12,15,18,21-tetra" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C51H80O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01471r">
+            <rdf:Description rdf:about="#M_MAM01471r">
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@@ -37978,10 +37977,10 @@
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-      <species metaid="MAM01472l" sboTerm="SBO:0000247" id="MAM01472l" name="cholesterol-ester-6,9,12,15,18-tetraco" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C51H82O2">
+      <species metaid="M_MAM01472l" sboTerm="SBO:0000247" id="M_MAM01472l" name="cholesterol-ester-6,9,12,15,18-tetraco" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C51H82O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01472l">
+            <rdf:Description rdf:about="#M_MAM01472l">
               <bqbiol:is>
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                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M01472"/>
@@ -37991,10 +37990,10 @@
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-      <species metaid="MAM01472r" sboTerm="SBO:0000247" id="MAM01472r" name="cholesterol-ester-6,9,12,15,18-tetraco" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C51H82O2">
+      <species metaid="M_MAM01472r" sboTerm="SBO:0000247" id="M_MAM01472r" name="cholesterol-ester-6,9,12,15,18-tetraco" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C51H82O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01472r">
+            <rdf:Description rdf:about="#M_MAM01472r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M01472"/>
@@ -38004,10 +38003,10 @@
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-      <species metaid="MAM01473l" sboTerm="SBO:0000247" id="MAM01473l" name="cholesterol-ester-6,9,12,15-octa" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C45H72O2">
+      <species metaid="M_MAM01473l" sboTerm="SBO:0000247" id="M_MAM01473l" name="cholesterol-ester-6,9,12,15-octa" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C45H72O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01473l">
+            <rdf:Description rdf:about="#M_MAM01473l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M01473"/>
@@ -38017,10 +38016,10 @@
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-      <species metaid="MAM01473r" sboTerm="SBO:0000247" id="MAM01473r" name="cholesterol-ester-6,9,12,15-octa" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C45H72O2">
+      <species metaid="M_MAM01473r" sboTerm="SBO:0000247" id="M_MAM01473r" name="cholesterol-ester-6,9,12,15-octa" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C45H72O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01473r">
+            <rdf:Description rdf:about="#M_MAM01473r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M01473"/>
@@ -38030,10 +38029,10 @@
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         </annotation>
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-      <species metaid="MAM01474l" sboTerm="SBO:0000247" id="MAM01474l" name="cholesterol-ester-6,9-octa" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C45H76O2">
+      <species metaid="M_MAM01474l" sboTerm="SBO:0000247" id="M_MAM01474l" name="cholesterol-ester-6,9-octa" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C45H76O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01474l">
+            <rdf:Description rdf:about="#M_MAM01474l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M01474"/>
@@ -38043,10 +38042,10 @@
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         </annotation>
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-      <species metaid="MAM01474r" sboTerm="SBO:0000247" id="MAM01474r" name="cholesterol-ester-6,9-octa" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C45H76O2">
+      <species metaid="M_MAM01474r" sboTerm="SBO:0000247" id="M_MAM01474r" name="cholesterol-ester-6,9-octa" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C45H76O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01474r">
+            <rdf:Description rdf:about="#M_MAM01474r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M01474"/>
@@ -38056,10 +38055,10 @@
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         </annotation>
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-      <species metaid="MAM01475l" sboTerm="SBO:0000247" id="MAM01475l" name="cholesterol-ester-7,10,13,16,19-docosa" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C49H78O2">
+      <species metaid="M_MAM01475l" sboTerm="SBO:0000247" id="M_MAM01475l" name="cholesterol-ester-7,10,13,16,19-docosa" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C49H78O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01475l">
+            <rdf:Description rdf:about="#M_MAM01475l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/LMST01020031"/>
@@ -38071,10 +38070,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM01475r" sboTerm="SBO:0000247" id="MAM01475r" name="cholesterol-ester-7,10,13,16,19-docosa" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C49H78O2">
+      <species metaid="M_MAM01475r" sboTerm="SBO:0000247" id="M_MAM01475r" name="cholesterol-ester-7,10,13,16,19-docosa" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C49H78O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01475r">
+            <rdf:Description rdf:about="#M_MAM01475r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/LMST01020031"/>
@@ -38086,10 +38085,10 @@
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         </annotation>
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-      <species metaid="MAM01476l" sboTerm="SBO:0000247" id="MAM01476l" name="cholesterol-ester-7,10,13,16-docosa" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C49H80O2">
+      <species metaid="M_MAM01476l" sboTerm="SBO:0000247" id="M_MAM01476l" name="cholesterol-ester-7,10,13,16-docosa" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C49H80O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01476l">
+            <rdf:Description rdf:about="#M_MAM01476l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/LMST01020018"/>
@@ -38101,10 +38100,10 @@
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         </annotation>
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-      <species metaid="MAM01476r" sboTerm="SBO:0000247" id="MAM01476r" name="cholesterol-ester-7,10,13,16-docosa" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C49H80O2">
+      <species metaid="M_MAM01476r" sboTerm="SBO:0000247" id="M_MAM01476r" name="cholesterol-ester-7,10,13,16-docosa" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C49H80O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01476r">
+            <rdf:Description rdf:about="#M_MAM01476r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/LMST01020018"/>
@@ -38116,10 +38115,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM01477l" sboTerm="SBO:0000247" id="MAM01477l" name="cholesterol-ester-7-hexa" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C43H74O2">
+      <species metaid="M_MAM01477l" sboTerm="SBO:0000247" id="M_MAM01477l" name="cholesterol-ester-7-hexa" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C43H74O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01477l">
+            <rdf:Description rdf:about="#M_MAM01477l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M01477"/>
@@ -38129,10 +38128,10 @@
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         </annotation>
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-      <species metaid="MAM01477r" sboTerm="SBO:0000247" id="MAM01477r" name="cholesterol-ester-7-hexa" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C43H74O2">
+      <species metaid="M_MAM01477r" sboTerm="SBO:0000247" id="M_MAM01477r" name="cholesterol-ester-7-hexa" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C43H74O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01477r">
+            <rdf:Description rdf:about="#M_MAM01477r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M01477"/>
@@ -38142,10 +38141,10 @@
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-      <species metaid="MAM01478l" sboTerm="SBO:0000247" id="MAM01478l" name="cholesterol-ester-7-octade" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C45H78O2">
+      <species metaid="M_MAM01478l" sboTerm="SBO:0000247" id="M_MAM01478l" name="cholesterol-ester-7-octade" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C45H78O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01478l">
+            <rdf:Description rdf:about="#M_MAM01478l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M01478"/>
@@ -38155,10 +38154,10 @@
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         </annotation>
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-      <species metaid="MAM01478r" sboTerm="SBO:0000247" id="MAM01478r" name="cholesterol-ester-7-octade" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C45H78O2">
+      <species metaid="M_MAM01478r" sboTerm="SBO:0000247" id="M_MAM01478r" name="cholesterol-ester-7-octade" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C45H78O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01478r">
+            <rdf:Description rdf:about="#M_MAM01478r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M01478"/>
@@ -38168,10 +38167,10 @@
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+      <species metaid="M_MAM01479l" sboTerm="SBO:0000247" id="M_MAM01479l" name="cholesterol-ester-7-tetrade" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C41H70O2">
         <annotation>
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-            <rdf:Description rdf:about="#MAM01479l">
+            <rdf:Description rdf:about="#M_MAM01479l">
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@@ -38181,10 +38180,10 @@
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+      <species metaid="M_MAM01479r" sboTerm="SBO:0000247" id="M_MAM01479r" name="cholesterol-ester-7-tetrade" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C41H70O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01479r">
+            <rdf:Description rdf:about="#M_MAM01479r">
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@@ -38194,10 +38193,10 @@
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-      <species metaid="MAM01480l" sboTerm="SBO:0000247" id="MAM01480l" name="cholesterol-ester-8,11,14,17-eico" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C47H76O2">
+      <species metaid="M_MAM01480l" sboTerm="SBO:0000247" id="M_MAM01480l" name="cholesterol-ester-8,11,14,17-eico" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C47H76O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01480l">
+            <rdf:Description rdf:about="#M_MAM01480l">
               <bqbiol:is>
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@@ -38207,10 +38206,10 @@
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-      <species metaid="MAM01480r" sboTerm="SBO:0000247" id="MAM01480r" name="cholesterol-ester-8,11,14,17-eico" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C47H76O2">
+      <species metaid="M_MAM01480r" sboTerm="SBO:0000247" id="M_MAM01480r" name="cholesterol-ester-8,11,14,17-eico" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C47H76O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01480r">
+            <rdf:Description rdf:about="#M_MAM01480r">
               <bqbiol:is>
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                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M01480"/>
@@ -38220,10 +38219,10 @@
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+      <species metaid="M_MAM01481l" sboTerm="SBO:0000247" id="M_MAM01481l" name="cholesterol-ester-8,11-eico" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C47H80O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01481l">
+            <rdf:Description rdf:about="#M_MAM01481l">
               <bqbiol:is>
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                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M01481"/>
@@ -38233,10 +38232,10 @@
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-      <species metaid="MAM01481r" sboTerm="SBO:0000247" id="MAM01481r" name="cholesterol-ester-8,11-eico" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C47H80O2">
+      <species metaid="M_MAM01481r" sboTerm="SBO:0000247" id="M_MAM01481r" name="cholesterol-ester-8,11-eico" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C47H80O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01481r">
+            <rdf:Description rdf:about="#M_MAM01481r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M01481"/>
@@ -38246,10 +38245,10 @@
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-      <species metaid="MAM01482l" sboTerm="SBO:0000247" id="MAM01482l" name="cholesterol-ester-9,12,15,18,21-tetra" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C51H82O2">
+      <species metaid="M_MAM01482l" sboTerm="SBO:0000247" id="M_MAM01482l" name="cholesterol-ester-9,12,15,18,21-tetra" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C51H82O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01482l">
+            <rdf:Description rdf:about="#M_MAM01482l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M01482"/>
@@ -38259,10 +38258,10 @@
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-      <species metaid="MAM01482r" sboTerm="SBO:0000247" id="MAM01482r" name="cholesterol-ester-9,12,15,18,21-tetra" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C51H82O2">
+      <species metaid="M_MAM01482r" sboTerm="SBO:0000247" id="M_MAM01482r" name="cholesterol-ester-9,12,15,18,21-tetra" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C51H82O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01482r">
+            <rdf:Description rdf:about="#M_MAM01482r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M01482"/>
@@ -38272,10 +38271,10 @@
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-      <species metaid="MAM01483l" sboTerm="SBO:0000247" id="MAM01483l" name="cholesterol-ester-9,12,15,18-tetraco" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C51H84O2">
+      <species metaid="M_MAM01483l" sboTerm="SBO:0000247" id="M_MAM01483l" name="cholesterol-ester-9,12,15,18-tetraco" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C51H84O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01483l">
+            <rdf:Description rdf:about="#M_MAM01483l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M01483"/>
@@ -38285,10 +38284,10 @@
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-      <species metaid="MAM01483r" sboTerm="SBO:0000247" id="MAM01483r" name="cholesterol-ester-9,12,15,18-tetraco" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C51H84O2">
+      <species metaid="M_MAM01483r" sboTerm="SBO:0000247" id="M_MAM01483r" name="cholesterol-ester-9,12,15,18-tetraco" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C51H84O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01483r">
+            <rdf:Description rdf:about="#M_MAM01483r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M01483"/>
@@ -38298,10 +38297,10 @@
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-      <species metaid="MAM01484l" sboTerm="SBO:0000247" id="MAM01484l" name="cholesterol-ester-9-eicose" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C47H82O2">
+      <species metaid="M_MAM01484l" sboTerm="SBO:0000247" id="M_MAM01484l" name="cholesterol-ester-9-eicose" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C47H82O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01484l">
+            <rdf:Description rdf:about="#M_MAM01484l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M01484"/>
@@ -38311,10 +38310,10 @@
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-      <species metaid="MAM01484r" sboTerm="SBO:0000247" id="MAM01484r" name="cholesterol-ester-9-eicose" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C47H82O2">
+      <species metaid="M_MAM01484r" sboTerm="SBO:0000247" id="M_MAM01484r" name="cholesterol-ester-9-eicose" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C47H82O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01484r">
+            <rdf:Description rdf:about="#M_MAM01484r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M01484"/>
@@ -38324,10 +38323,10 @@
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-      <species metaid="MAM01485l" sboTerm="SBO:0000247" id="MAM01485l" name="cholesterol-ester-9-heptade" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C44H76O2">
+      <species metaid="M_MAM01485l" sboTerm="SBO:0000247" id="M_MAM01485l" name="cholesterol-ester-9-heptade" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C44H76O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01485l">
+            <rdf:Description rdf:about="#M_MAM01485l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M01485"/>
@@ -38337,10 +38336,10 @@
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-      <species metaid="MAM01485r" sboTerm="SBO:0000247" id="MAM01485r" name="cholesterol-ester-9-heptade" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C44H76O2">
+      <species metaid="M_MAM01485r" sboTerm="SBO:0000247" id="M_MAM01485r" name="cholesterol-ester-9-heptade" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C44H76O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01485r">
+            <rdf:Description rdf:about="#M_MAM01485r">
               <bqbiol:is>
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                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M01485"/>
@@ -38350,10 +38349,10 @@
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-      <species metaid="MAM01486l" sboTerm="SBO:0000247" id="MAM01486l" name="cholesterol-ester-9-octa" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C45H78O2">
+      <species metaid="M_MAM01486l" sboTerm="SBO:0000247" id="M_MAM01486l" name="cholesterol-ester-9-octa" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C45H78O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01486l">
+            <rdf:Description rdf:about="#M_MAM01486l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M01486"/>
@@ -38363,10 +38362,10 @@
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-      <species metaid="MAM01486r" sboTerm="SBO:0000247" id="MAM01486r" name="cholesterol-ester-9-octa" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C45H78O2">
+      <species metaid="M_MAM01486r" sboTerm="SBO:0000247" id="M_MAM01486r" name="cholesterol-ester-9-octa" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C45H78O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01486r">
+            <rdf:Description rdf:about="#M_MAM01486r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M01486"/>
@@ -38376,10 +38375,10 @@
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-      <species metaid="MAM01487l" sboTerm="SBO:0000247" id="MAM01487l" name="cholesterol-ester-9-tetrade" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C41H70O2">
+      <species metaid="M_MAM01487l" sboTerm="SBO:0000247" id="M_MAM01487l" name="cholesterol-ester-9-tetrade" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C41H70O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01487l">
+            <rdf:Description rdf:about="#M_MAM01487l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/LMST01020021"/>
@@ -38391,10 +38390,10 @@
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         </annotation>
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-      <species metaid="MAM01487r" sboTerm="SBO:0000247" id="MAM01487r" name="cholesterol-ester-9-tetrade" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C41H70O2">
+      <species metaid="M_MAM01487r" sboTerm="SBO:0000247" id="M_MAM01487r" name="cholesterol-ester-9-tetrade" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C41H70O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01487r">
+            <rdf:Description rdf:about="#M_MAM01487r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/LMST01020021"/>
@@ -38406,10 +38405,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01488l" sboTerm="SBO:0000247" id="MAM01488l" name="cholesterol-ester-arach" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C47H76O2">
+      <species metaid="M_MAM01488l" sboTerm="SBO:0000247" id="M_MAM01488l" name="cholesterol-ester-arach" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C47H76O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01488l">
+            <rdf:Description rdf:about="#M_MAM01488l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/LMST01020014"/>
@@ -38421,10 +38420,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01488r" sboTerm="SBO:0000247" id="MAM01488r" name="cholesterol-ester-arach" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C47H76O2">
+      <species metaid="M_MAM01488r" sboTerm="SBO:0000247" id="M_MAM01488r" name="cholesterol-ester-arach" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C47H76O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01488r">
+            <rdf:Description rdf:about="#M_MAM01488r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/LMST01020014"/>
@@ -38436,10 +38435,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01489l" sboTerm="SBO:0000247" id="MAM01489l" name="cholesterol-ester-cis-vac" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C45H78O2">
+      <species metaid="M_MAM01489l" sboTerm="SBO:0000247" id="M_MAM01489l" name="cholesterol-ester-cis-vac" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C45H78O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01489l">
+            <rdf:Description rdf:about="#M_MAM01489l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M01489"/>
@@ -38449,10 +38448,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM01489r" sboTerm="SBO:0000247" id="MAM01489r" name="cholesterol-ester-cis-vac" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C45H78O2">
+      <species metaid="M_MAM01489r" sboTerm="SBO:0000247" id="M_MAM01489r" name="cholesterol-ester-cis-vac" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C45H78O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01489r">
+            <rdf:Description rdf:about="#M_MAM01489r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M01489"/>
@@ -38462,10 +38461,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01490l" sboTerm="SBO:0000247" id="MAM01490l" name="cholesterol-ester-dihomo-gamma" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C47H78O2">
+      <species metaid="M_MAM01490l" sboTerm="SBO:0000247" id="M_MAM01490l" name="cholesterol-ester-dihomo-gamma" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C47H78O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01490l">
+            <rdf:Description rdf:about="#M_MAM01490l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/LMST01020013"/>
@@ -38477,10 +38476,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01490r" sboTerm="SBO:0000247" id="MAM01490r" name="cholesterol-ester-dihomo-gamma" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C47H78O2">
+      <species metaid="M_MAM01490r" sboTerm="SBO:0000247" id="M_MAM01490r" name="cholesterol-ester-dihomo-gamma" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C47H78O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01490r">
+            <rdf:Description rdf:about="#M_MAM01490r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/LMST01020013"/>
@@ -38492,10 +38491,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01491l" sboTerm="SBO:0000247" id="MAM01491l" name="cholesterol-ester-docosa" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C49H88O2">
+      <species metaid="M_MAM01491l" sboTerm="SBO:0000247" id="M_MAM01491l" name="cholesterol-ester-docosa" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C49H88O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01491l">
+            <rdf:Description rdf:about="#M_MAM01491l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/LMST01020016"/>
@@ -38507,10 +38506,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01491r" sboTerm="SBO:0000247" id="MAM01491r" name="cholesterol-ester-docosa" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C49H88O2">
+      <species metaid="M_MAM01491r" sboTerm="SBO:0000247" id="M_MAM01491r" name="cholesterol-ester-docosa" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C49H88O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01491r">
+            <rdf:Description rdf:about="#M_MAM01491r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/LMST01020016"/>
@@ -38522,10 +38521,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01492l" sboTerm="SBO:0000247" id="MAM01492l" name="cholesterol-ester-eico" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C47H84O2">
+      <species metaid="M_MAM01492l" sboTerm="SBO:0000247" id="M_MAM01492l" name="cholesterol-ester-eico" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C47H84O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01492l">
+            <rdf:Description rdf:about="#M_MAM01492l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/LMST01020010"/>
@@ -38537,10 +38536,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01492r" sboTerm="SBO:0000247" id="MAM01492r" name="cholesterol-ester-eico" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C47H84O2">
+      <species metaid="M_MAM01492r" sboTerm="SBO:0000247" id="M_MAM01492r" name="cholesterol-ester-eico" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C47H84O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01492r">
+            <rdf:Description rdf:about="#M_MAM01492r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/LMST01020010"/>
@@ -38552,10 +38551,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01493l" sboTerm="SBO:0000247" id="MAM01493l" name="cholesterol-ester-gamma-lin" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C45H74O2">
+      <species metaid="M_MAM01493l" sboTerm="SBO:0000247" id="M_MAM01493l" name="cholesterol-ester-gamma-lin" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C45H74O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01493l">
+            <rdf:Description rdf:about="#M_MAM01493l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM164675"/>
@@ -38566,10 +38565,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01493r" sboTerm="SBO:0000247" id="MAM01493r" name="cholesterol-ester-gamma-lin" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C45H74O2">
+      <species metaid="M_MAM01493r" sboTerm="SBO:0000247" id="M_MAM01493r" name="cholesterol-ester-gamma-lin" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C45H74O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01493r">
+            <rdf:Description rdf:about="#M_MAM01493r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM164675"/>
@@ -38580,10 +38579,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01494l" sboTerm="SBO:0000247" id="MAM01494l" name="cholesterol-ester-heneico" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C48H86O2">
+      <species metaid="M_MAM01494l" sboTerm="SBO:0000247" id="M_MAM01494l" name="cholesterol-ester-heneico" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C48H86O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01494l">
+            <rdf:Description rdf:about="#M_MAM01494l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M01494"/>
@@ -38593,10 +38592,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01494r" sboTerm="SBO:0000247" id="MAM01494r" name="cholesterol-ester-heneico" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C48H86O2">
+      <species metaid="M_MAM01494r" sboTerm="SBO:0000247" id="M_MAM01494r" name="cholesterol-ester-heneico" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C48H86O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01494r">
+            <rdf:Description rdf:about="#M_MAM01494r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M01494"/>
@@ -38606,10 +38605,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01495l" sboTerm="SBO:0000247" id="MAM01495l" name="cholesterol-ester-hepta" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C44H78O2">
+      <species metaid="M_MAM01495l" sboTerm="SBO:0000247" id="M_MAM01495l" name="cholesterol-ester-hepta" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C44H78O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01495l">
+            <rdf:Description rdf:about="#M_MAM01495l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/LMST01020026"/>
@@ -38622,10 +38621,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01495r" sboTerm="SBO:0000247" id="MAM01495r" name="cholesterol-ester-hepta" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C44H78O2">
+      <species metaid="M_MAM01495r" sboTerm="SBO:0000247" id="M_MAM01495r" name="cholesterol-ester-hepta" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C44H78O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01495r">
+            <rdf:Description rdf:about="#M_MAM01495r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/LMST01020026"/>
@@ -38638,10 +38637,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01496l" sboTerm="SBO:0000247" id="MAM01496l" name="cholesterol-ester-hexacosa" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C53H96O2">
+      <species metaid="M_MAM01496l" sboTerm="SBO:0000247" id="M_MAM01496l" name="cholesterol-ester-hexacosa" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C53H96O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01496l">
+            <rdf:Description rdf:about="#M_MAM01496l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M01496"/>
@@ -38651,10 +38650,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01496r" sboTerm="SBO:0000247" id="MAM01496r" name="cholesterol-ester-hexacosa" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C53H96O2">
+      <species metaid="M_MAM01496r" sboTerm="SBO:0000247" id="M_MAM01496r" name="cholesterol-ester-hexacosa" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C53H96O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01496r">
+            <rdf:Description rdf:about="#M_MAM01496r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M01496"/>
@@ -38664,10 +38663,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01497l" sboTerm="SBO:0000247" id="MAM01497l" name="cholesterol-ester-hexecose" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C53H94O2">
+      <species metaid="M_MAM01497l" sboTerm="SBO:0000247" id="M_MAM01497l" name="cholesterol-ester-hexecose" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C53H94O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01497l">
+            <rdf:Description rdf:about="#M_MAM01497l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M01497"/>
@@ -38677,10 +38676,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01497r" sboTerm="SBO:0000247" id="MAM01497r" name="cholesterol-ester-hexecose" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C53H94O2">
+      <species metaid="M_MAM01497r" sboTerm="SBO:0000247" id="M_MAM01497r" name="cholesterol-ester-hexecose" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C53H94O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01497r">
+            <rdf:Description rdf:about="#M_MAM01497r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M01497"/>
@@ -38690,10 +38689,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01498l" sboTerm="SBO:0000247" id="MAM01498l" name="cholesterol-ester-laur" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C39H68O2">
+      <species metaid="M_MAM01498l" sboTerm="SBO:0000247" id="M_MAM01498l" name="cholesterol-ester-laur" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C39H68O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01498l">
+            <rdf:Description rdf:about="#M_MAM01498l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/LMST01020001"/>
@@ -38705,10 +38704,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01498r" sboTerm="SBO:0000247" id="MAM01498r" name="cholesterol-ester-laur" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C39H68O2">
+      <species metaid="M_MAM01498r" sboTerm="SBO:0000247" id="M_MAM01498r" name="cholesterol-ester-laur" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C39H68O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01498r">
+            <rdf:Description rdf:about="#M_MAM01498r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/LMST01020001"/>
@@ -38720,10 +38719,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01499l" sboTerm="SBO:0000247" id="MAM01499l" name="cholesterol-ester-lin" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C45H76O2">
+      <species metaid="M_MAM01499l" sboTerm="SBO:0000247" id="M_MAM01499l" name="cholesterol-ester-lin" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C45H76O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01499l">
+            <rdf:Description rdf:about="#M_MAM01499l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:41509"/>
@@ -38737,10 +38736,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01499r" sboTerm="SBO:0000247" id="MAM01499r" name="cholesterol-ester-lin" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C45H76O2">
+      <species metaid="M_MAM01499r" sboTerm="SBO:0000247" id="M_MAM01499r" name="cholesterol-ester-lin" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C45H76O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01499r">
+            <rdf:Description rdf:about="#M_MAM01499r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:41509"/>
@@ -38754,10 +38753,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01500l" sboTerm="SBO:0000247" id="MAM01500l" name="cholesterol-ester-linolen" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C45H74O2">
+      <species metaid="M_MAM01500l" sboTerm="SBO:0000247" id="M_MAM01500l" name="cholesterol-ester-linolen" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C45H74O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01500l">
+            <rdf:Description rdf:about="#M_MAM01500l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/LMST01020009"/>
@@ -38770,10 +38769,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01500r" sboTerm="SBO:0000247" id="MAM01500r" name="cholesterol-ester-linolen" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C45H74O2">
+      <species metaid="M_MAM01500r" sboTerm="SBO:0000247" id="M_MAM01500r" name="cholesterol-ester-linolen" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C45H74O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01500r">
+            <rdf:Description rdf:about="#M_MAM01500r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/LMST01020009"/>
@@ -38786,10 +38785,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01501l" sboTerm="SBO:0000247" id="MAM01501l" name="cholesterol-ester-myrist" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C41H72O2">
+      <species metaid="M_MAM01501l" sboTerm="SBO:0000247" id="M_MAM01501l" name="cholesterol-ester-myrist" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C41H72O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01501l">
+            <rdf:Description rdf:about="#M_MAM01501l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/LMST01020004"/>
@@ -38801,10 +38800,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01501r" sboTerm="SBO:0000247" id="MAM01501r" name="cholesterol-ester-myrist" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C41H72O2">
+      <species metaid="M_MAM01501r" sboTerm="SBO:0000247" id="M_MAM01501r" name="cholesterol-ester-myrist" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C41H72O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01501r">
+            <rdf:Description rdf:about="#M_MAM01501r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/LMST01020004"/>
@@ -38816,10 +38815,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01502l" sboTerm="SBO:0000247" id="MAM01502l" name="cholesterol-ester-nanode" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C46H82O2">
+      <species metaid="M_MAM01502l" sboTerm="SBO:0000247" id="M_MAM01502l" name="cholesterol-ester-nanode" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C46H82O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01502l">
+            <rdf:Description rdf:about="#M_MAM01502l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/LMST01020002"/>
@@ -38832,10 +38831,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01502r" sboTerm="SBO:0000247" id="MAM01502r" name="cholesterol-ester-nanode" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C46H82O2">
+      <species metaid="M_MAM01502r" sboTerm="SBO:0000247" id="M_MAM01502r" name="cholesterol-ester-nanode" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C46H82O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01502r">
+            <rdf:Description rdf:about="#M_MAM01502r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/LMST01020002"/>
@@ -38848,10 +38847,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01503l" sboTerm="SBO:0000247" id="MAM01503l" name="cholesterol-ester-ol" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C45H78O2">
+      <species metaid="M_MAM01503l" sboTerm="SBO:0000247" id="M_MAM01503l" name="cholesterol-ester-ol" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C45H78O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01503l">
+            <rdf:Description rdf:about="#M_MAM01503l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:46898"/>
@@ -38865,10 +38864,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01503r" sboTerm="SBO:0000247" id="MAM01503r" name="cholesterol-ester-ol" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C45H78O2">
+      <species metaid="M_MAM01503r" sboTerm="SBO:0000247" id="M_MAM01503r" name="cholesterol-ester-ol" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C45H78O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01503r">
+            <rdf:Description rdf:about="#M_MAM01503r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:46898"/>
@@ -38882,10 +38881,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01504l" sboTerm="SBO:0000247" id="MAM01504l" name="cholesterol-ester-palm" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C43H76O2">
+      <species metaid="M_MAM01504l" sboTerm="SBO:0000247" id="M_MAM01504l" name="cholesterol-ester-palm" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C43H76O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01504l">
+            <rdf:Description rdf:about="#M_MAM01504l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:3663"/>
@@ -38901,10 +38900,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01504r" sboTerm="SBO:0000247" id="MAM01504r" name="cholesterol-ester-palm" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C43H76O2">
+      <species metaid="M_MAM01504r" sboTerm="SBO:0000247" id="M_MAM01504r" name="cholesterol-ester-palm" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C43H76O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01504r">
+            <rdf:Description rdf:about="#M_MAM01504r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:3663"/>
@@ -38920,10 +38919,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01505l" sboTerm="SBO:0000247" id="MAM01505l" name="cholesterol-ester-palmn" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C43H74O2">
+      <species metaid="M_MAM01505l" sboTerm="SBO:0000247" id="M_MAM01505l" name="cholesterol-ester-palmn" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C43H74O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01505l">
+            <rdf:Description rdf:about="#M_MAM01505l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/LMST01020006"/>
@@ -38935,10 +38934,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01505r" sboTerm="SBO:0000247" id="MAM01505r" name="cholesterol-ester-palmn" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C43H74O2">
+      <species metaid="M_MAM01505r" sboTerm="SBO:0000247" id="M_MAM01505r" name="cholesterol-ester-palmn" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C43H74O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01505r">
+            <rdf:Description rdf:about="#M_MAM01505r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/LMST01020006"/>
@@ -38950,10 +38949,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01506l" sboTerm="SBO:0000247" id="MAM01506l" name="cholesterol-ester-penta" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C42H74O2">
+      <species metaid="M_MAM01506l" sboTerm="SBO:0000247" id="M_MAM01506l" name="cholesterol-ester-penta" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C42H74O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01506l">
+            <rdf:Description rdf:about="#M_MAM01506l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/LMST01020027"/>
@@ -38966,10 +38965,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01506r" sboTerm="SBO:0000247" id="MAM01506r" name="cholesterol-ester-penta" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C42H74O2">
+      <species metaid="M_MAM01506r" sboTerm="SBO:0000247" id="M_MAM01506r" name="cholesterol-ester-penta" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C42H74O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01506r">
+            <rdf:Description rdf:about="#M_MAM01506r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/LMST01020027"/>
@@ -38982,10 +38981,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01507l" sboTerm="SBO:0000247" id="MAM01507l" name="cholesterol-ester-stea" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C45H80O2">
+      <species metaid="M_MAM01507l" sboTerm="SBO:0000247" id="M_MAM01507l" name="cholesterol-ester-stea" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C45H80O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01507l">
+            <rdf:Description rdf:about="#M_MAM01507l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/LMST01020007"/>
@@ -38997,10 +38996,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01507r" sboTerm="SBO:0000247" id="MAM01507r" name="cholesterol-ester-stea" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C45H80O2">
+      <species metaid="M_MAM01507r" sboTerm="SBO:0000247" id="M_MAM01507r" name="cholesterol-ester-stea" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C45H80O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01507r">
+            <rdf:Description rdf:about="#M_MAM01507r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/LMST01020007"/>
@@ -39012,10 +39011,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01508l" sboTerm="SBO:0000247" id="MAM01508l" name="cholesterol-ester-tetraco" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C51H92O2">
+      <species metaid="M_MAM01508l" sboTerm="SBO:0000247" id="M_MAM01508l" name="cholesterol-ester-tetraco" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C51H92O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01508l">
+            <rdf:Description rdf:about="#M_MAM01508l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M01508"/>
@@ -39025,10 +39024,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01508r" sboTerm="SBO:0000247" id="MAM01508r" name="cholesterol-ester-tetraco" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C51H92O2">
+      <species metaid="M_MAM01508r" sboTerm="SBO:0000247" id="M_MAM01508r" name="cholesterol-ester-tetraco" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C51H92O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01508r">
+            <rdf:Description rdf:about="#M_MAM01508r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M01508"/>
@@ -39038,10 +39037,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01509l" sboTerm="SBO:0000247" id="MAM01509l" name="cholesterol-ester-trico" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C50H90O2">
+      <species metaid="M_MAM01509l" sboTerm="SBO:0000247" id="M_MAM01509l" name="cholesterol-ester-trico" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C50H90O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01509l">
+            <rdf:Description rdf:about="#M_MAM01509l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M01509"/>
@@ -39051,10 +39050,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01509r" sboTerm="SBO:0000247" id="MAM01509r" name="cholesterol-ester-trico" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C50H90O2">
+      <species metaid="M_MAM01509r" sboTerm="SBO:0000247" id="M_MAM01509r" name="cholesterol-ester-trico" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C50H90O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01509r">
+            <rdf:Description rdf:about="#M_MAM01509r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M01509"/>
@@ -39064,10 +39063,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01510l" sboTerm="SBO:0000247" id="MAM01510l" name="cholesterol-ester-tridec" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C40H70O2">
+      <species metaid="M_MAM01510l" sboTerm="SBO:0000247" id="M_MAM01510l" name="cholesterol-ester-tridec" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C40H70O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01510l">
+            <rdf:Description rdf:about="#M_MAM01510l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M01510"/>
@@ -39077,10 +39076,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01510r" sboTerm="SBO:0000247" id="MAM01510r" name="cholesterol-ester-tridec" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C40H70O2">
+      <species metaid="M_MAM01510r" sboTerm="SBO:0000247" id="M_MAM01510r" name="cholesterol-ester-tridec" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C40H70O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01510r">
+            <rdf:Description rdf:about="#M_MAM01510r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M01510"/>
@@ -39090,10 +39089,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01511c" sboTerm="SBO:0000247" id="MAM01511c" name="cholesterol-STAR" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C1420H2313N409O415S17">
+      <species metaid="M_MAM01511c" sboTerm="SBO:0000247" id="M_MAM01511c" name="cholesterol-STAR" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C1420H2313N409O415S17">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01511c">
+            <rdf:Description rdf:about="#M_MAM01511c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M01511"/>
@@ -39103,10 +39102,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01511m" sboTerm="SBO:0000247" id="MAM01511m" name="cholesterol-STAR" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C1420H2313N409O415S17">
+      <species metaid="M_MAM01511m" sboTerm="SBO:0000247" id="M_MAM01511m" name="cholesterol-STAR" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C1420H2313N409O415S17">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01511m">
+            <rdf:Description rdf:about="#M_MAM01511m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M01511"/>
@@ -39116,10 +39115,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01512c" sboTerm="SBO:0000247" id="MAM01512c" name="cholesterol-sulfate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C27H45O4S">
+      <species metaid="M_MAM01512c" sboTerm="SBO:0000247" id="M_MAM01512c" name="cholesterol-sulfate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C27H45O4S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01512c">
+            <rdf:Description rdf:about="#M_MAM01512c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/chsterols"/>
@@ -39137,10 +39136,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01512r" sboTerm="SBO:0000247" id="MAM01512r" name="cholesterol-sulfate" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C27H45O4S">
+      <species metaid="M_MAM01512r" sboTerm="SBO:0000247" id="M_MAM01512r" name="cholesterol-sulfate" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C27H45O4S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01512r">
+            <rdf:Description rdf:about="#M_MAM01512r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/chsterols"/>
@@ -39158,10 +39157,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01513c" sboTerm="SBO:0000247" id="MAM01513c" name="choline" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C5H14NO">
+      <species metaid="M_MAM01513c" sboTerm="SBO:0000247" id="M_MAM01513c" name="choline" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C5H14NO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01513c">
+            <rdf:Description rdf:about="#M_MAM01513c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/chol"/>
@@ -39177,10 +39176,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01513g" sboTerm="SBO:0000247" id="MAM01513g" name="choline" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C5H14NO">
+      <species metaid="M_MAM01513g" sboTerm="SBO:0000247" id="M_MAM01513g" name="choline" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C5H14NO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01513g">
+            <rdf:Description rdf:about="#M_MAM01513g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/chol"/>
@@ -39196,10 +39195,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01513m" sboTerm="SBO:0000247" id="MAM01513m" name="choline" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C5H14NO">
+      <species metaid="M_MAM01513m" sboTerm="SBO:0000247" id="M_MAM01513m" name="choline" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C5H14NO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01513m">
+            <rdf:Description rdf:about="#M_MAM01513m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/chol"/>
@@ -39215,10 +39214,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01513n" sboTerm="SBO:0000247" id="MAM01513n" name="choline" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C5H14NO">
+      <species metaid="M_MAM01513n" sboTerm="SBO:0000247" id="M_MAM01513n" name="choline" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C5H14NO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01513n">
+            <rdf:Description rdf:about="#M_MAM01513n">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/chol"/>
@@ -39234,10 +39233,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01513r" sboTerm="SBO:0000247" id="MAM01513r" name="choline" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C5H14NO">
+      <species metaid="M_MAM01513r" sboTerm="SBO:0000247" id="M_MAM01513r" name="choline" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C5H14NO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01513r">
+            <rdf:Description rdf:about="#M_MAM01513r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/chol"/>
@@ -39253,10 +39252,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01513e" sboTerm="SBO:0000247" id="MAM01513e" name="choline" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C5H14NO">
+      <species metaid="M_MAM01513e" sboTerm="SBO:0000247" id="M_MAM01513e" name="choline" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C5H14NO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01513e">
+            <rdf:Description rdf:about="#M_MAM01513e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/chol"/>
@@ -39272,10 +39271,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01514c" sboTerm="SBO:0000247" id="MAM01514c" name="choloyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C45H70N7O20P3S">
+      <species metaid="M_MAM01514c" sboTerm="SBO:0000247" id="M_MAM01514c" name="choloyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C45H70N7O20P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01514c">
+            <rdf:Description rdf:about="#M_MAM01514c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/cholcoa"/>
@@ -39292,10 +39291,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01514m" sboTerm="SBO:0000247" id="MAM01514m" name="choloyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C45H70N7O20P3S">
+      <species metaid="M_MAM01514m" sboTerm="SBO:0000247" id="M_MAM01514m" name="choloyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C45H70N7O20P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01514m">
+            <rdf:Description rdf:about="#M_MAM01514m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/cholcoa"/>
@@ -39312,10 +39311,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01514x" sboTerm="SBO:0000247" id="MAM01514x" name="choloyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C45H70N7O20P3S">
+      <species metaid="M_MAM01514x" sboTerm="SBO:0000247" id="M_MAM01514x" name="choloyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C45H70N7O20P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01514x">
+            <rdf:Description rdf:about="#M_MAM01514x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/cholcoa"/>
@@ -39332,10 +39331,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01514r" sboTerm="SBO:0000247" id="MAM01514r" name="choloyl-CoA" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C45H70N7O20P3S">
+      <species metaid="M_MAM01514r" sboTerm="SBO:0000247" id="M_MAM01514r" name="choloyl-CoA" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C45H70N7O20P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01514r">
+            <rdf:Description rdf:about="#M_MAM01514r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/cholcoa"/>
@@ -39352,10 +39351,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01515g" sboTerm="SBO:0000247" id="MAM01515g" name="chondroitin sulfate A (GalNAc4S-GlcA) and B (IdoA2S-GalNAc4S), precursor 2" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C37H54NO37S2X">
+      <species metaid="M_MAM01515g" sboTerm="SBO:0000247" id="M_MAM01515g" name="chondroitin sulfate A (GalNAc4S-GlcA) and B (IdoA2S-GalNAc4S), precursor 2" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C37H54NO37S2X">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01515g">
+            <rdf:Description rdf:about="#M_MAM01515g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/cs_a_b_pre2"/>
@@ -39367,10 +39366,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01516g" sboTerm="SBO:0000247" id="MAM01516g" name="chondroitin sulfate A (GalNAc4S-GlcA) and B (IdoA2S-GalNAc4S), precursor 3" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C45H67N2O42S2X">
+      <species metaid="M_MAM01516g" sboTerm="SBO:0000247" id="M_MAM01516g" name="chondroitin sulfate A (GalNAc4S-GlcA) and B (IdoA2S-GalNAc4S), precursor 3" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C45H67N2O42S2X">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01516g">
+            <rdf:Description rdf:about="#M_MAM01516g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/cs_a_b_pre3"/>
@@ -39382,10 +39381,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01517g" sboTerm="SBO:0000247" id="MAM01517g" name="chondroitin sulfate A (GalNAc4S-GlcA) proteoglycan" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C45H66N2O45S3X">
+      <species metaid="M_MAM01517g" sboTerm="SBO:0000247" id="M_MAM01517g" name="chondroitin sulfate A (GalNAc4S-GlcA) proteoglycan" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C45H66N2O45S3X">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01517g">
+            <rdf:Description rdf:about="#M_MAM01517g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/cspg_a"/>
@@ -39397,10 +39396,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01517l" sboTerm="SBO:0000247" id="MAM01517l" name="chondroitin sulfate A (GalNAc4S-GlcA) proteoglycan" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C45H66N2O45S3X">
+      <species metaid="M_MAM01517l" sboTerm="SBO:0000247" id="M_MAM01517l" name="chondroitin sulfate A (GalNAc4S-GlcA) proteoglycan" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C45H66N2O45S3X">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01517l">
+            <rdf:Description rdf:about="#M_MAM01517l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/cspg_a"/>
@@ -39412,10 +39411,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01517e" sboTerm="SBO:0000247" id="MAM01517e" name="chondroitin sulfate A (GalNAc4S-GlcA) proteoglycan" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C45H66N2O45S3X">
+      <species metaid="M_MAM01517e" sboTerm="SBO:0000247" id="M_MAM01517e" name="chondroitin sulfate A (GalNAc4S-GlcA) proteoglycan" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C45H66N2O45S3X">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01517e">
+            <rdf:Description rdf:about="#M_MAM01517e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/cspg_a"/>
@@ -39427,10 +39426,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01518g" sboTerm="SBO:0000247" id="MAM01518g" name="chondroitin sulfate A (GalNAc4S-GlcA), B (IdoA2S-GalNAc4S), and E (GalNAc4,6diS-GlcA), precursor 1" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C31H47NO31S2X">
+      <species metaid="M_MAM01518g" sboTerm="SBO:0000247" id="M_MAM01518g" name="chondroitin sulfate A (GalNAc4S-GlcA), B (IdoA2S-GalNAc4S), and E (GalNAc4,6diS-GlcA), precursor 1" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C31H47NO31S2X">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01518g">
+            <rdf:Description rdf:about="#M_MAM01518g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/cs_a_b_e_pre1"/>
@@ -39442,10 +39441,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01519l" sboTerm="SBO:0000247" id="MAM01519l" name="chondroitin sulfate A (GalNAc4S-GlcA), degradation product 1" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C45H68N2O43S2">
+      <species metaid="M_MAM01519l" sboTerm="SBO:0000247" id="M_MAM01519l" name="chondroitin sulfate A (GalNAc4S-GlcA), degradation product 1" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C45H68N2O43S2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01519l">
+            <rdf:Description rdf:about="#M_MAM01519l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/cs_a_deg1"/>
@@ -39457,10 +39456,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01520l" sboTerm="SBO:0000247" id="MAM01520l" name="chondroitin sulfate A (GalNAc4S-GlcA), degradation product 2" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C37H55NO38S2">
+      <species metaid="M_MAM01520l" sboTerm="SBO:0000247" id="M_MAM01520l" name="chondroitin sulfate A (GalNAc4S-GlcA), degradation product 2" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C37H55NO38S2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01520l">
+            <rdf:Description rdf:about="#M_MAM01520l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/cs_a_deg2"/>
@@ -39472,10 +39471,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01521l" sboTerm="SBO:0000247" id="MAM01521l" name="chondroitin sulfate A (GalNAc4S-GlcA), degradation product 3" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C31H48NO32S2">
+      <species metaid="M_MAM01521l" sboTerm="SBO:0000247" id="M_MAM01521l" name="chondroitin sulfate A (GalNAc4S-GlcA), degradation product 3" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C31H48NO32S2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01521l">
+            <rdf:Description rdf:about="#M_MAM01521l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/cs_a_deg3"/>
@@ -39487,10 +39486,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01522l" sboTerm="SBO:0000247" id="MAM01522l" name="chondroitin sulfate A (GalNAc4S-GlcA), degradation product 4" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C31H49NO29S">
+      <species metaid="M_MAM01522l" sboTerm="SBO:0000247" id="M_MAM01522l" name="chondroitin sulfate A (GalNAc4S-GlcA), degradation product 4" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C31H49NO29S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01522l">
+            <rdf:Description rdf:about="#M_MAM01522l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/cs_a_deg4"/>
@@ -39502,10 +39501,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01523l" sboTerm="SBO:0000247" id="MAM01523l" name="chondroitin sulfate A (GalNAc4S-GlcA), degradation product 5" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C23H36O24S">
+      <species metaid="M_MAM01523l" sboTerm="SBO:0000247" id="M_MAM01523l" name="chondroitin sulfate A (GalNAc4S-GlcA), degradation product 5" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C23H36O24S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01523l">
+            <rdf:Description rdf:about="#M_MAM01523l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/cs_a_deg5"/>
@@ -39517,10 +39516,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01524l" sboTerm="SBO:0000247" id="MAM01524l" name="chondroitin sulfate A (GalNAc4S-GlcA), free chain" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C45H67N2O46S3">
+      <species metaid="M_MAM01524l" sboTerm="SBO:0000247" id="M_MAM01524l" name="chondroitin sulfate A (GalNAc4S-GlcA), free chain" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C45H67N2O46S3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01524l">
+            <rdf:Description rdf:about="#M_MAM01524l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/cs_a"/>
@@ -39532,10 +39531,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01525g" sboTerm="SBO:0000247" id="MAM01525g" name="chondroitin sulfate B - dermatan sulfate (IdoA2S-GalNAc4S) proteoglycan" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-6" fbc:chemicalFormula="C45H65N2O48S4X">
+      <species metaid="M_MAM01525g" sboTerm="SBO:0000247" id="M_MAM01525g" name="chondroitin sulfate B - dermatan sulfate (IdoA2S-GalNAc4S) proteoglycan" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-6" fbc:chemicalFormula="C45H65N2O48S4X">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01525g">
+            <rdf:Description rdf:about="#M_MAM01525g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/cspg_b"/>
@@ -39547,10 +39546,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01525l" sboTerm="SBO:0000247" id="MAM01525l" name="chondroitin sulfate B - dermatan sulfate (IdoA2S-GalNAc4S) proteoglycan" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-6" fbc:chemicalFormula="C45H65N2O48S4X">
+      <species metaid="M_MAM01525l" sboTerm="SBO:0000247" id="M_MAM01525l" name="chondroitin sulfate B - dermatan sulfate (IdoA2S-GalNAc4S) proteoglycan" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-6" fbc:chemicalFormula="C45H65N2O48S4X">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01525l">
+            <rdf:Description rdf:about="#M_MAM01525l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/cspg_b"/>
@@ -39562,10 +39561,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01525e" sboTerm="SBO:0000247" id="MAM01525e" name="chondroitin sulfate B - dermatan sulfate (IdoA2S-GalNAc4S) proteoglycan" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-6" fbc:chemicalFormula="C45H65N2O48S4X">
+      <species metaid="M_MAM01525e" sboTerm="SBO:0000247" id="M_MAM01525e" name="chondroitin sulfate B - dermatan sulfate (IdoA2S-GalNAc4S) proteoglycan" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-6" fbc:chemicalFormula="C45H65N2O48S4X">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01525e">
+            <rdf:Description rdf:about="#M_MAM01525e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/cspg_b"/>
@@ -39577,10 +39576,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01526l" sboTerm="SBO:0000247" id="MAM01526l" name="chondroitin sulfate B - dermatan sulfate (IdoA2S-GalNAc4S), degradation product 1" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C45H67N2O46S3">
+      <species metaid="M_MAM01526l" sboTerm="SBO:0000247" id="M_MAM01526l" name="chondroitin sulfate B - dermatan sulfate (IdoA2S-GalNAc4S), degradation product 1" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C45H67N2O46S3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01526l">
+            <rdf:Description rdf:about="#M_MAM01526l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/cs_b_deg1"/>
@@ -39592,10 +39591,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01527l" sboTerm="SBO:0000247" id="MAM01527l" name="chondroitin sulfate B - dermatan sulfate (IdoA2S-GalNAc4S), degradation product 2" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C37H54NO41S3">
+      <species metaid="M_MAM01527l" sboTerm="SBO:0000247" id="M_MAM01527l" name="chondroitin sulfate B - dermatan sulfate (IdoA2S-GalNAc4S), degradation product 2" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C37H54NO41S3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01527l">
+            <rdf:Description rdf:about="#M_MAM01527l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/cs_b_deg2"/>
@@ -39607,10 +39606,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01528l" sboTerm="SBO:0000247" id="MAM01528l" name="chondroitin sulfate B - dermatan sulfate (IdoA2S-GalNAc4S), degradation product 3" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C37H55NO38S2">
+      <species metaid="M_MAM01528l" sboTerm="SBO:0000247" id="M_MAM01528l" name="chondroitin sulfate B - dermatan sulfate (IdoA2S-GalNAc4S), degradation product 3" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C37H55NO38S2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01528l">
+            <rdf:Description rdf:about="#M_MAM01528l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/cs_b_deg3"/>
@@ -39622,10 +39621,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01529l" sboTerm="SBO:0000247" id="MAM01529l" name="chondroitin sulfate B - dermatan sulfate (IdoA2S-GalNAc4S), free chain" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-6" fbc:chemicalFormula="C45H66N2O49S4">
+      <species metaid="M_MAM01529l" sboTerm="SBO:0000247" id="M_MAM01529l" name="chondroitin sulfate B - dermatan sulfate (IdoA2S-GalNAc4S), free chain" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-6" fbc:chemicalFormula="C45H66N2O49S4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01529l">
+            <rdf:Description rdf:about="#M_MAM01529l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/cs_b"/>
@@ -39637,10 +39636,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01530g" sboTerm="SBO:0000247" id="MAM01530g" name="chondroitin sulfate B (IdoA2S-GalNAc4S), precursor 4" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C45H67N2O42S2X">
+      <species metaid="M_MAM01530g" sboTerm="SBO:0000247" id="M_MAM01530g" name="chondroitin sulfate B (IdoA2S-GalNAc4S), precursor 4" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C45H67N2O42S2X">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01530g">
+            <rdf:Description rdf:about="#M_MAM01530g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/cs_b_pre4"/>
@@ -39652,10 +39651,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01531g" sboTerm="SBO:0000247" id="MAM01531g" name="chondroitin sulfate B (IdoA2S-GalNAc4s), precursor 5" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C45H66N2O45S3X">
+      <species metaid="M_MAM01531g" sboTerm="SBO:0000247" id="M_MAM01531g" name="chondroitin sulfate B (IdoA2S-GalNAc4s), precursor 5" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C45H66N2O45S3X">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01531g">
+            <rdf:Description rdf:about="#M_MAM01531g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/cs_b_pre5"/>
@@ -39667,10 +39666,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01532g" sboTerm="SBO:0000247" id="MAM01532g" name="chondroitin sulfate C (GalNAc6S-GlcA) and D (GlcNAc6S-GlcA2S), precursor 1" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C31H47NO31S2X">
+      <species metaid="M_MAM01532g" sboTerm="SBO:0000247" id="M_MAM01532g" name="chondroitin sulfate C (GalNAc6S-GlcA) and D (GlcNAc6S-GlcA2S), precursor 1" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C31H47NO31S2X">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01532g">
+            <rdf:Description rdf:about="#M_MAM01532g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/cs_c_d_e_pre1"/>
@@ -39682,10 +39681,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01533g" sboTerm="SBO:0000247" id="MAM01533g" name="chondroitin sulfate C (GalNAc6S-GlcA) proteoglycan" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C45H66N2O45S3X">
+      <species metaid="M_MAM01533g" sboTerm="SBO:0000247" id="M_MAM01533g" name="chondroitin sulfate C (GalNAc6S-GlcA) proteoglycan" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C45H66N2O45S3X">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01533g">
+            <rdf:Description rdf:about="#M_MAM01533g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/cspg_c"/>
@@ -39697,10 +39696,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01533l" sboTerm="SBO:0000247" id="MAM01533l" name="chondroitin sulfate C (GalNAc6S-GlcA) proteoglycan" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C45H66N2O45S3X">
+      <species metaid="M_MAM01533l" sboTerm="SBO:0000247" id="M_MAM01533l" name="chondroitin sulfate C (GalNAc6S-GlcA) proteoglycan" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C45H66N2O45S3X">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01533l">
+            <rdf:Description rdf:about="#M_MAM01533l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/cspg_c"/>
@@ -39712,10 +39711,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01533e" sboTerm="SBO:0000247" id="MAM01533e" name="chondroitin sulfate C (GalNAc6S-GlcA) proteoglycan" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C45H66N2O45S3X">
+      <species metaid="M_MAM01533e" sboTerm="SBO:0000247" id="M_MAM01533e" name="chondroitin sulfate C (GalNAc6S-GlcA) proteoglycan" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C45H66N2O45S3X">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01533e">
+            <rdf:Description rdf:about="#M_MAM01533e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/cspg_c"/>
@@ -39727,10 +39726,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01534l" sboTerm="SBO:0000247" id="MAM01534l" name="chondroitin sulfate C (GalNAc6S-GlcA), degradation product 1" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C45H68N2O43S2">
+      <species metaid="M_MAM01534l" sboTerm="SBO:0000247" id="M_MAM01534l" name="chondroitin sulfate C (GalNAc6S-GlcA), degradation product 1" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C45H68N2O43S2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01534l">
+            <rdf:Description rdf:about="#M_MAM01534l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/cs_c_deg1"/>
@@ -39742,10 +39741,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01535l" sboTerm="SBO:0000247" id="MAM01535l" name="chondroitin sulfate C (GalNAc6S-GlcA), degradation product 2" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C37H55NO38S2">
+      <species metaid="M_MAM01535l" sboTerm="SBO:0000247" id="M_MAM01535l" name="chondroitin sulfate C (GalNAc6S-GlcA), degradation product 2" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C37H55NO38S2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01535l">
+            <rdf:Description rdf:about="#M_MAM01535l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/cs_c_deg2"/>
@@ -39757,10 +39756,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM01536l" sboTerm="SBO:0000247" id="MAM01536l" name="chondroitin sulfate C (GalNAc6S-GlcA), degradation product 3" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C31H48NO32S2">
+      <species metaid="M_MAM01536l" sboTerm="SBO:0000247" id="M_MAM01536l" name="chondroitin sulfate C (GalNAc6S-GlcA), degradation product 3" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C31H48NO32S2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01536l">
+            <rdf:Description rdf:about="#M_MAM01536l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/cs_c_deg3"/>
@@ -39772,10 +39771,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM01537l" sboTerm="SBO:0000247" id="MAM01537l" name="chondroitin sulfate C (GalNAc6S-GlcA), degradation product 4" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C31H49NO29S">
+      <species metaid="M_MAM01537l" sboTerm="SBO:0000247" id="M_MAM01537l" name="chondroitin sulfate C (GalNAc6S-GlcA), degradation product 4" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C31H49NO29S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01537l">
+            <rdf:Description rdf:about="#M_MAM01537l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/cs_c_deg4"/>
@@ -39787,10 +39786,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM01538l" sboTerm="SBO:0000247" id="MAM01538l" name="chondroitin sulfate C (GalNAc6S-GlcA), degradation product 5" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C23H36O24S">
+      <species metaid="M_MAM01538l" sboTerm="SBO:0000247" id="M_MAM01538l" name="chondroitin sulfate C (GalNAc6S-GlcA), degradation product 5" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C23H36O24S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01538l">
+            <rdf:Description rdf:about="#M_MAM01538l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/cs_c_deg5"/>
@@ -39802,10 +39801,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01539l" sboTerm="SBO:0000247" id="MAM01539l" name="chondroitin sulfate C (GalNAc6S-GlcA), free chain" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C45H67N2O46S3">
+      <species metaid="M_MAM01539l" sboTerm="SBO:0000247" id="M_MAM01539l" name="chondroitin sulfate C (GalNAc6S-GlcA), free chain" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C45H67N2O46S3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01539l">
+            <rdf:Description rdf:about="#M_MAM01539l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/cs_c"/>
@@ -39817,10 +39816,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01540g" sboTerm="SBO:0000247" id="MAM01540g" name="chondroitin sulfate C (GalNAc6S-GlcA), precursor 2" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C37H54NO37S2X">
+      <species metaid="M_MAM01540g" sboTerm="SBO:0000247" id="M_MAM01540g" name="chondroitin sulfate C (GalNAc6S-GlcA), precursor 2" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C37H54NO37S2X">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01540g">
+            <rdf:Description rdf:about="#M_MAM01540g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/cs_c_pre2"/>
@@ -39832,10 +39831,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01541g" sboTerm="SBO:0000247" id="MAM01541g" name="chondroitin sulfate C (GalNAc6S-GlcA), precursor 3" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C45H67N2O42S2X">
+      <species metaid="M_MAM01541g" sboTerm="SBO:0000247" id="M_MAM01541g" name="chondroitin sulfate C (GalNAc6S-GlcA), precursor 3" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C45H67N2O42S2X">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01541g">
+            <rdf:Description rdf:about="#M_MAM01541g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/cs_c_pre3"/>
@@ -39847,10 +39846,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01542g" sboTerm="SBO:0000247" id="MAM01542g" name="chondroitin sulfate D (GlcNAc6S-GlcA2S) precursor 2" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C31H46NO34S3X">
+      <species metaid="M_MAM01542g" sboTerm="SBO:0000247" id="M_MAM01542g" name="chondroitin sulfate D (GlcNAc6S-GlcA2S) precursor 2" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C31H46NO34S3X">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01542g">
+            <rdf:Description rdf:about="#M_MAM01542g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/cs_d_pre2"/>
@@ -39862,10 +39861,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01543g" sboTerm="SBO:0000247" id="MAM01543g" name="chondroitin sulfate D (GlcNAc6S-GlcA2S) proteoglycan" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-7" fbc:chemicalFormula="C45H64N2O51S5X">
+      <species metaid="M_MAM01543g" sboTerm="SBO:0000247" id="M_MAM01543g" name="chondroitin sulfate D (GlcNAc6S-GlcA2S) proteoglycan" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-7" fbc:chemicalFormula="C45H64N2O51S5X">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01543g">
+            <rdf:Description rdf:about="#M_MAM01543g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/cspg_d"/>
@@ -39877,10 +39876,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01543l" sboTerm="SBO:0000247" id="MAM01543l" name="chondroitin sulfate D (GlcNAc6S-GlcA2S) proteoglycan" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-7" fbc:chemicalFormula="C45H64N2O51S5X">
+      <species metaid="M_MAM01543l" sboTerm="SBO:0000247" id="M_MAM01543l" name="chondroitin sulfate D (GlcNAc6S-GlcA2S) proteoglycan" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-7" fbc:chemicalFormula="C45H64N2O51S5X">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01543l">
+            <rdf:Description rdf:about="#M_MAM01543l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/cspg_d"/>
@@ -39892,10 +39891,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01543e" sboTerm="SBO:0000247" id="MAM01543e" name="chondroitin sulfate D (GlcNAc6S-GlcA2S) proteoglycan" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-7" fbc:chemicalFormula="C45H64N2O51S5X">
+      <species metaid="M_MAM01543e" sboTerm="SBO:0000247" id="M_MAM01543e" name="chondroitin sulfate D (GlcNAc6S-GlcA2S) proteoglycan" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-7" fbc:chemicalFormula="C45H64N2O51S5X">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01543e">
+            <rdf:Description rdf:about="#M_MAM01543e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/cspg_d"/>
@@ -39907,10 +39906,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01544l" sboTerm="SBO:0000247" id="MAM01544l" name="chondroitin sulfate D (GlcNAc6S-GlcA2S), degradation product 1" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-6" fbc:chemicalFormula="C45H66N2O49S4">
+      <species metaid="M_MAM01544l" sboTerm="SBO:0000247" id="M_MAM01544l" name="chondroitin sulfate D (GlcNAc6S-GlcA2S), degradation product 1" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-6" fbc:chemicalFormula="C45H66N2O49S4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01544l">
+            <rdf:Description rdf:about="#M_MAM01544l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/cs_d_deg1"/>
@@ -39922,10 +39921,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01545l" sboTerm="SBO:0000247" id="MAM01545l" name="chondroitin sulfate D (GlcNAc6S-GlcA2S), degradation product 2" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-6" fbc:chemicalFormula="C37H53NO44S4">
+      <species metaid="M_MAM01545l" sboTerm="SBO:0000247" id="M_MAM01545l" name="chondroitin sulfate D (GlcNAc6S-GlcA2S), degradation product 2" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-6" fbc:chemicalFormula="C37H53NO44S4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01545l">
+            <rdf:Description rdf:about="#M_MAM01545l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/cs_d_deg2"/>
@@ -39937,10 +39936,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01546l" sboTerm="SBO:0000247" id="MAM01546l" name="chondroitin sulfate D (GlcNAc6S-GlcA2S), degradation product 3" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C37H54NO41S3">
+      <species metaid="M_MAM01546l" sboTerm="SBO:0000247" id="M_MAM01546l" name="chondroitin sulfate D (GlcNAc6S-GlcA2S), degradation product 3" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C37H54NO41S3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01546l">
+            <rdf:Description rdf:about="#M_MAM01546l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/cs_d_deg3"/>
@@ -39952,10 +39951,10 @@
           </rdf:RDF>
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+      <species metaid="M_MAM01547l" sboTerm="SBO:0000247" id="M_MAM01547l" name="chondroitin sulfate D (GlcNAc6S-GlcA2S), degradation product 4" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C31H47NO35S3">
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+            <rdf:Description rdf:about="#M_MAM01547l">
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@@ -39967,10 +39966,10 @@
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+      <species metaid="M_MAM01548l" sboTerm="SBO:0000247" id="M_MAM01548l" name="chondroitin sulfate D (GlcNAc6S-GlcA2S), degradation product 5" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C31H48NO32S2">
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-            <rdf:Description rdf:about="#MAM01548l">
+            <rdf:Description rdf:about="#M_MAM01548l">
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                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/cs_d_deg5"/>
@@ -39982,10 +39981,10 @@
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+      <species metaid="M_MAM01549l" sboTerm="SBO:0000247" id="M_MAM01549l" name="chondroitin sulfate D (GlcNAc6S-GlcA2S), degradation product 6" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C23H35O27S2">
         <annotation>
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-            <rdf:Description rdf:about="#MAM01549l">
+            <rdf:Description rdf:about="#M_MAM01549l">
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                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/cs_d_deg6"/>
@@ -39997,10 +39996,10 @@
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+      <species metaid="M_MAM01550l" sboTerm="SBO:0000247" id="M_MAM01550l" name="chondroitin sulfate D (GlcNAc6S-GlcA2S), free chain" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-7" fbc:chemicalFormula="C45H65N2O52S5">
         <annotation>
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-            <rdf:Description rdf:about="#MAM01550l">
+            <rdf:Description rdf:about="#M_MAM01550l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/cs_d"/>
@@ -40012,10 +40011,10 @@
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+      <species metaid="M_MAM01551g" sboTerm="SBO:0000247" id="M_MAM01551g" name="chondroitin sulfate D (GlcNAc6S-GlcA2S), precursor 3" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C37H53NO40S3X">
         <annotation>
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-            <rdf:Description rdf:about="#MAM01551g">
+            <rdf:Description rdf:about="#M_MAM01551g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/cs_d_pre3"/>
@@ -40027,10 +40026,10 @@
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-      <species metaid="MAM01552g" sboTerm="SBO:0000247" id="MAM01552g" name="chondroitin sulfate D (GlcNAc6S-GlcA2S), precursor 4" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C45H66N2O45S3X">
+      <species metaid="M_MAM01552g" sboTerm="SBO:0000247" id="M_MAM01552g" name="chondroitin sulfate D (GlcNAc6S-GlcA2S), precursor 4" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C45H66N2O45S3X">
         <annotation>
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-            <rdf:Description rdf:about="#MAM01552g">
+            <rdf:Description rdf:about="#M_MAM01552g">
               <bqbiol:is>
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                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/cs_d_pre4"/>
@@ -40042,10 +40041,10 @@
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-      <species metaid="MAM01553g" sboTerm="SBO:0000247" id="MAM01553g" name="chondroitin sulfate D (GlcNAc6S-GlcA2S), precursor 5" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-6" fbc:chemicalFormula="C45H65N2O48S4X">
+      <species metaid="M_MAM01553g" sboTerm="SBO:0000247" id="M_MAM01553g" name="chondroitin sulfate D (GlcNAc6S-GlcA2S), precursor 5" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-6" fbc:chemicalFormula="C45H65N2O48S4X">
         <annotation>
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-            <rdf:Description rdf:about="#MAM01553g">
+            <rdf:Description rdf:about="#M_MAM01553g">
               <bqbiol:is>
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                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/cs_d_pre5"/>
@@ -40057,10 +40056,10 @@
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+      <species metaid="M_MAM01554g" sboTerm="SBO:0000247" id="M_MAM01554g" name="chondroitin sulfate E (GalNAc4,6diS-GlcA) proteoglycan" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-8" fbc:chemicalFormula="C45H63N2O54S6X">
         <annotation>
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-            <rdf:Description rdf:about="#MAM01554g">
+            <rdf:Description rdf:about="#M_MAM01554g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/cspg_e"/>
@@ -40072,10 +40071,10 @@
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+      <species metaid="M_MAM01554l" sboTerm="SBO:0000247" id="M_MAM01554l" name="chondroitin sulfate E (GalNAc4,6diS-GlcA) proteoglycan" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-8" fbc:chemicalFormula="C45H63N2O54S6X">
         <annotation>
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-            <rdf:Description rdf:about="#MAM01554l">
+            <rdf:Description rdf:about="#M_MAM01554l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/cspg_e"/>
@@ -40087,10 +40086,10 @@
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-      <species metaid="MAM01554e" sboTerm="SBO:0000247" id="MAM01554e" name="chondroitin sulfate E (GalNAc4,6diS-GlcA) proteoglycan" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-8" fbc:chemicalFormula="C45H63N2O54S6X">
+      <species metaid="M_MAM01554e" sboTerm="SBO:0000247" id="M_MAM01554e" name="chondroitin sulfate E (GalNAc4,6diS-GlcA) proteoglycan" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-8" fbc:chemicalFormula="C45H63N2O54S6X">
         <annotation>
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-            <rdf:Description rdf:about="#MAM01554e">
+            <rdf:Description rdf:about="#M_MAM01554e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/cspg_e"/>
@@ -40102,10 +40101,10 @@
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+      <species metaid="M_MAM01555l" sboTerm="SBO:0000247" id="M_MAM01555l" name="chondroitin sulfate E (GalNAc4,6diS-GlcA), degradation product 1" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-7" fbc:chemicalFormula="C45H65N2O52S5">
         <annotation>
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-            <rdf:Description rdf:about="#MAM01555l">
+            <rdf:Description rdf:about="#M_MAM01555l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/cs_e_deg1"/>
@@ -40117,10 +40116,10 @@
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+      <species metaid="M_MAM01556l" sboTerm="SBO:0000247" id="M_MAM01556l" name="chondroitin sulfate E (GalNAc4,6diS-GlcA), degradation product 2" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-6" fbc:chemicalFormula="C45H66N2O49S4">
         <annotation>
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-            <rdf:Description rdf:about="#MAM01556l">
+            <rdf:Description rdf:about="#M_MAM01556l">
               <bqbiol:is>
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                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/cs_e_deg2"/>
@@ -40132,10 +40131,10 @@
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+      <species metaid="M_MAM01557l" sboTerm="SBO:0000247" id="M_MAM01557l" name="chondroitin sulfate E (GalNAc4,6diS-GlcA), degradation product 3" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-6" fbc:chemicalFormula="C37H53NO44S4">
         <annotation>
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-            <rdf:Description rdf:about="#MAM01557l">
+            <rdf:Description rdf:about="#M_MAM01557l">
               <bqbiol:is>
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                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/cs_e_deg3"/>
@@ -40147,10 +40146,10 @@
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+      <species metaid="M_MAM01558l" sboTerm="SBO:0000247" id="M_MAM01558l" name="chondroitin sulfate E (GalNAc4,6diS-GlcA), degradation product 4" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C31H46NO38S4">
         <annotation>
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-            <rdf:Description rdf:about="#MAM01558l">
+            <rdf:Description rdf:about="#M_MAM01558l">
               <bqbiol:is>
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                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/cs_e_deg4"/>
@@ -40162,10 +40161,10 @@
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+      <species metaid="M_MAM01559l" sboTerm="SBO:0000247" id="M_MAM01559l" name="chondroitin sulfate E (GalNAc4,6diS-GlcA), degradation product 5" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C31H47NO35S3">
         <annotation>
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-            <rdf:Description rdf:about="#MAM01559l">
+            <rdf:Description rdf:about="#M_MAM01559l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/cs_e_deg5"/>
@@ -40177,10 +40176,10 @@
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+      <species metaid="M_MAM01560l" sboTerm="SBO:0000247" id="M_MAM01560l" name="chondroitin sulfate E (GalNAc4,6diS-GlcA), degradation product 6" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C31H48NO32S2">
         <annotation>
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-            <rdf:Description rdf:about="#MAM01560l">
+            <rdf:Description rdf:about="#M_MAM01560l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/cs_e_deg6"/>
@@ -40192,10 +40191,10 @@
           </rdf:RDF>
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+      <species metaid="M_MAM01561l" sboTerm="SBO:0000247" id="M_MAM01561l" name="chondroitin sulfate E (GalNAc4,6diS-GlcA), degradation product 7" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C23H35O27S2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01561l">
+            <rdf:Description rdf:about="#M_MAM01561l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/cs_e_deg7"/>
@@ -40207,10 +40206,10 @@
           </rdf:RDF>
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-      <species metaid="MAM01562l" sboTerm="SBO:0000247" id="MAM01562l" name="chondroitin sulfate E (GalNAc4,6diS-GlcA), free chain" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-8" fbc:chemicalFormula="C45H64N2O55S6">
+      <species metaid="M_MAM01562l" sboTerm="SBO:0000247" id="M_MAM01562l" name="chondroitin sulfate E (GalNAc4,6diS-GlcA), free chain" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-8" fbc:chemicalFormula="C45H64N2O55S6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01562l">
+            <rdf:Description rdf:about="#M_MAM01562l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/cs_e"/>
@@ -40222,10 +40221,10 @@
           </rdf:RDF>
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       </species>
-      <species metaid="MAM01563g" sboTerm="SBO:0000247" id="MAM01563g" name="chondroitin sulfate E (GalNAc4,6diS-GlcA), precursor 2" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C31H45NO37S4X">
+      <species metaid="M_MAM01563g" sboTerm="SBO:0000247" id="M_MAM01563g" name="chondroitin sulfate E (GalNAc4,6diS-GlcA), precursor 2" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C31H45NO37S4X">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01563g">
+            <rdf:Description rdf:about="#M_MAM01563g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/cs_e_pre2"/>
@@ -40237,10 +40236,10 @@
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         </annotation>
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-      <species metaid="MAM01564g" sboTerm="SBO:0000247" id="MAM01564g" name="chondroitin sulfate E (GalNAc4,6diS-GlcA), precursor 3" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-6" fbc:chemicalFormula="C37H52NO43S4X">
+      <species metaid="M_MAM01564g" sboTerm="SBO:0000247" id="M_MAM01564g" name="chondroitin sulfate E (GalNAc4,6diS-GlcA), precursor 3" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-6" fbc:chemicalFormula="C37H52NO43S4X">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01564g">
+            <rdf:Description rdf:about="#M_MAM01564g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/cs_e_pre3"/>
@@ -40252,10 +40251,10 @@
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-      <species metaid="MAM01565g" sboTerm="SBO:0000247" id="MAM01565g" name="chondroitin sulfate E (GalNAc4,6diS-GlcA), precursor 4" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-6" fbc:chemicalFormula="C45H65N2O48S4X">
+      <species metaid="M_MAM01565g" sboTerm="SBO:0000247" id="M_MAM01565g" name="chondroitin sulfate E (GalNAc4,6diS-GlcA), precursor 4" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-6" fbc:chemicalFormula="C45H65N2O48S4X">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01565g">
+            <rdf:Description rdf:about="#M_MAM01565g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/cs_e_pre4"/>
@@ -40267,10 +40266,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM01566g" sboTerm="SBO:0000247" id="MAM01566g" name="chondroitin sulfate E (GalNAc4,6diS-GlcA), precursor 5a" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-7" fbc:chemicalFormula="C45H64N2O51S5X">
+      <species metaid="M_MAM01566g" sboTerm="SBO:0000247" id="M_MAM01566g" name="chondroitin sulfate E (GalNAc4,6diS-GlcA), precursor 5a" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-7" fbc:chemicalFormula="C45H64N2O51S5X">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01566g">
+            <rdf:Description rdf:about="#M_MAM01566g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/cs_e_pre5a"/>
@@ -40282,10 +40281,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM01567g" sboTerm="SBO:0000247" id="MAM01567g" name="chondroitin sulfate E (GalNAc4,6diS-GlcA), precursor 5b" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-7" fbc:chemicalFormula="C45H64N2O51S5X">
+      <species metaid="M_MAM01567g" sboTerm="SBO:0000247" id="M_MAM01567g" name="chondroitin sulfate E (GalNAc4,6diS-GlcA), precursor 5b" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-7" fbc:chemicalFormula="C45H64N2O51S5X">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01567g">
+            <rdf:Description rdf:about="#M_MAM01567g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/cs_e_pre5b"/>
@@ -40297,10 +40296,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM01568g" sboTerm="SBO:0000247" id="MAM01568g" name="chondroitin sulfate precursor (GalNAc-GlcA-(Gal)2-Xyl-L-Ser (protein))" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C31H49NO25X">
+      <species metaid="M_MAM01568g" sboTerm="SBO:0000247" id="M_MAM01568g" name="chondroitin sulfate precursor (GalNAc-GlcA-(Gal)2-Xyl-L-Ser (protein))" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C31H49NO25X">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01568g">
+            <rdf:Description rdf:about="#M_MAM01568g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/cs_pre"/>
@@ -40312,10 +40311,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM01569l" sboTerm="SBO:0000247" id="MAM01569l" name="chylomicron remnant" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C25519H39954N6593O8030P6S113R283">
+      <species metaid="M_MAM01569l" sboTerm="SBO:0000247" id="M_MAM01569l" name="chylomicron remnant" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C25519H39954N6593O8030P6S113R283">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01569l">
+            <rdf:Description rdf:about="#M_MAM01569l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M01569"/>
@@ -40325,10 +40324,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01569e" sboTerm="SBO:0000247" id="MAM01569e" name="chylomicron remnant" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C25519H39954N6593O8030P6S113R283">
+      <species metaid="M_MAM01569e" sboTerm="SBO:0000247" id="M_MAM01569e" name="chylomicron remnant" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C25519H39954N6593O8030P6S113R283">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01569e">
+            <rdf:Description rdf:about="#M_MAM01569e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M01569"/>
@@ -40338,10 +40337,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01570e" sboTerm="SBO:0000247" id="MAM01570e" name="chylomicron" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C488977H426169N6593O471488P6S113R232012">
+      <species metaid="M_MAM01570e" sboTerm="SBO:0000247" id="M_MAM01570e" name="chylomicron" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C488977H426169N6593O471488P6S113R232012">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01570e">
+            <rdf:Description rdf:about="#M_MAM01570e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M01570"/>
@@ -40351,10 +40350,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01571c" sboTerm="SBO:0000247" id="MAM01571c" name="cimetidine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H16N6S">
+      <species metaid="M_MAM01571c" sboTerm="SBO:0000247" id="M_MAM01571c" name="cimetidine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H16N6S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01571c">
+            <rdf:Description rdf:about="#M_MAM01571c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C06952"/>
@@ -40366,10 +40365,10 @@
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         </annotation>
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-      <species metaid="MAM01571e" sboTerm="SBO:0000247" id="MAM01571e" name="cimetidine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H16N6S">
+      <species metaid="M_MAM01571e" sboTerm="SBO:0000247" id="M_MAM01571e" name="cimetidine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H16N6S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01571e">
+            <rdf:Description rdf:about="#M_MAM01571e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C06952"/>
@@ -40381,10 +40380,10 @@
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-      <species metaid="MAM01572c" sboTerm="SBO:0000247" id="MAM01572c" name="cinnavalininate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C14H6N2O6">
+      <species metaid="M_MAM01572c" sboTerm="SBO:0000247" id="M_MAM01572c" name="cinnavalininate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C14H6N2O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01572c">
+            <rdf:Description rdf:about="#M_MAM01572c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C05640"/>
@@ -40396,10 +40395,10 @@
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-      <species metaid="MAM01573m" sboTerm="SBO:0000247" id="MAM01573m" name="cis-(3S)-hydroxytetradec-5-enoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C35H56N7O18P3S">
+      <species metaid="M_MAM01573m" sboTerm="SBO:0000247" id="M_MAM01573m" name="cis-(3S)-hydroxytetradec-5-enoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C35H56N7O18P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01573m">
+            <rdf:Description rdf:about="#M_MAM01573m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M01573"/>
@@ -40409,10 +40408,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM01573x" sboTerm="SBO:0000247" id="MAM01573x" name="cis-(3S)-hydroxytetradec-5-enoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C35H56N7O18P3S">
+      <species metaid="M_MAM01573x" sboTerm="SBO:0000247" id="M_MAM01573x" name="cis-(3S)-hydroxytetradec-5-enoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C35H56N7O18P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01573x">
+            <rdf:Description rdf:about="#M_MAM01573x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M01573"/>
@@ -40422,10 +40421,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM01574m" sboTerm="SBO:0000247" id="MAM01574m" name="cis-(3S)-hydroxytetradec-7-enoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C35H56N7O18P3S">
+      <species metaid="M_MAM01574m" sboTerm="SBO:0000247" id="M_MAM01574m" name="cis-(3S)-hydroxytetradec-7-enoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C35H56N7O18P3S">
         <annotation>
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+            <rdf:Description rdf:about="#M_MAM01574m">
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@@ -40436,10 +40435,10 @@
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+      <species metaid="M_MAM01574x" sboTerm="SBO:0000247" id="M_MAM01574x" name="cis-(3S)-hydroxytetradec-7-enoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C35H56N7O18P3S">
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+            <rdf:Description rdf:about="#M_MAM01574x">
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@@ -40450,10 +40449,10 @@
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+      <species metaid="M_MAM01575m" sboTerm="SBO:0000247" id="M_MAM01575m" name="cis,cis-3,6-dodecadienoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C33H50N7O17P3S">
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+            <rdf:Description rdf:about="#M_MAM01575m">
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@@ -40468,10 +40467,10 @@
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+      <species metaid="M_MAM01575x" sboTerm="SBO:0000247" id="M_MAM01575x" name="cis,cis-3,6-dodecadienoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C33H50N7O17P3S">
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-            <rdf:Description rdf:about="#MAM01575x">
+            <rdf:Description rdf:about="#M_MAM01575x">
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@@ -40486,10 +40485,10 @@
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+      <species metaid="M_MAM01576m" sboTerm="SBO:0000247" id="M_MAM01576m" name="cis,cis-myristo-5,8-dienoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C35H54N7O17P3S">
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-            <rdf:Description rdf:about="#MAM01576m">
+            <rdf:Description rdf:about="#M_MAM01576m">
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@@ -40500,10 +40499,10 @@
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+      <species metaid="M_MAM01576x" sboTerm="SBO:0000247" id="M_MAM01576x" name="cis,cis-myristo-5,8-dienoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C35H54N7O17P3S">
         <annotation>
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-            <rdf:Description rdf:about="#MAM01576x">
+            <rdf:Description rdf:about="#M_MAM01576x">
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                   <rdf:li rdf:resource="https://identifiers.org/pubchem.compound/21252281"/>
@@ -40514,10 +40513,10 @@
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+      <species metaid="M_MAM01577m" sboTerm="SBO:0000247" id="M_MAM01577m" name="cis,cis-palmito-7,10-dienoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C37H58N7O17P3S">
         <annotation>
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-            <rdf:Description rdf:about="#MAM01577m">
+            <rdf:Description rdf:about="#M_MAM01577m">
               <bqbiol:is>
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@@ -40527,10 +40526,10 @@
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+      <species metaid="M_MAM01577x" sboTerm="SBO:0000247" id="M_MAM01577x" name="cis,cis-palmito-7,10-dienoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C37H58N7O17P3S">
         <annotation>
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-            <rdf:Description rdf:about="#MAM01577x">
+            <rdf:Description rdf:about="#M_MAM01577x">
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@@ -40540,10 +40539,10 @@
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+      <species metaid="M_MAM01578c" sboTerm="SBO:0000247" id="M_MAM01578c" name="cis-2-hydroxycinnamate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C9H7O3">
         <annotation>
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-            <rdf:Description rdf:about="#MAM01578c">
+            <rdf:Description rdf:about="#M_MAM01578c">
               <bqbiol:is>
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                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/2coum"/>
@@ -40558,10 +40557,10 @@
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+      <species metaid="M_MAM01579m" sboTerm="SBO:0000247" id="M_MAM01579m" name="cis-2-methyl-5-isopropylhexa-2,5-dienoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C31H46N7O17P3S">
         <annotation>
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-            <rdf:Description rdf:about="#MAM01579m">
+            <rdf:Description rdf:about="#M_MAM01579m">
               <bqbiol:is>
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                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/c2m26dcoa"/>
@@ -40576,10 +40575,10 @@
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+      <species metaid="M_MAM01579x" sboTerm="SBO:0000247" id="M_MAM01579x" name="cis-2-methyl-5-isopropylhexa-2,5-dienoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C31H46N7O17P3S">
         <annotation>
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-            <rdf:Description rdf:about="#MAM01579x">
+            <rdf:Description rdf:about="#M_MAM01579x">
               <bqbiol:is>
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                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/c2m26dcoa"/>
@@ -40594,10 +40593,10 @@
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-      <species metaid="MAM01580c" sboTerm="SBO:0000247" id="MAM01580c" name="cis-aconitate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C6H3O6">
+      <species metaid="M_MAM01580c" sboTerm="SBO:0000247" id="M_MAM01580c" name="cis-aconitate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C6H3O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01580c">
+            <rdf:Description rdf:about="#M_MAM01580c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:32805"/>
@@ -40612,10 +40611,10 @@
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-      <species metaid="MAM01580m" sboTerm="SBO:0000247" id="MAM01580m" name="cis-aconitate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C6H3O6">
+      <species metaid="M_MAM01580m" sboTerm="SBO:0000247" id="M_MAM01580m" name="cis-aconitate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C6H3O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01580m">
+            <rdf:Description rdf:about="#M_MAM01580m">
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@@ -40630,10 +40629,10 @@
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+      <species metaid="M_MAM01581c" sboTerm="SBO:0000247" id="M_MAM01581c" name="cis-beta-D-glucosyl-2-hydroxycinnamate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C15H18O8">
         <annotation>
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-            <rdf:Description rdf:about="#MAM01581c">
+            <rdf:Description rdf:about="#M_MAM01581c">
               <bqbiol:is>
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                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/bdg2hc"/>
@@ -40648,10 +40647,10 @@
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-      <species metaid="MAM01582c" sboTerm="SBO:0000247" id="MAM01582c" name="cis-cetoleic acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C22H41O2">
+      <species metaid="M_MAM01582c" sboTerm="SBO:0000247" id="M_MAM01582c" name="cis-cetoleic acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C22H41O2">
         <annotation>
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-            <rdf:Description rdf:about="#MAM01582c">
+            <rdf:Description rdf:about="#M_MAM01582c">
               <bqbiol:is>
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                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:32428"/>
@@ -40667,10 +40666,10 @@
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-      <species metaid="MAM01582l" sboTerm="SBO:0000247" id="MAM01582l" name="cis-cetoleic acid" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C22H41O2">
+      <species metaid="M_MAM01582l" sboTerm="SBO:0000247" id="M_MAM01582l" name="cis-cetoleic acid" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C22H41O2">
         <annotation>
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-            <rdf:Description rdf:about="#MAM01582l">
+            <rdf:Description rdf:about="#M_MAM01582l">
               <bqbiol:is>
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@@ -40686,10 +40685,10 @@
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+      <species metaid="M_MAM01582r" sboTerm="SBO:0000247" id="M_MAM01582r" name="cis-cetoleic acid" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C22H41O2">
         <annotation>
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-            <rdf:Description rdf:about="#MAM01582r">
+            <rdf:Description rdf:about="#M_MAM01582r">
               <bqbiol:is>
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                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:32428"/>
@@ -40705,10 +40704,10 @@
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-      <species metaid="MAM01582e" sboTerm="SBO:0000247" id="MAM01582e" name="cis-cetoleic acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C22H41O2">
+      <species metaid="M_MAM01582e" sboTerm="SBO:0000247" id="M_MAM01582e" name="cis-cetoleic acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C22H41O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01582e">
+            <rdf:Description rdf:about="#M_MAM01582e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:32428"/>
@@ -40724,10 +40723,10 @@
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         </annotation>
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-      <species metaid="MAM01583c" sboTerm="SBO:0000247" id="MAM01583c" name="cis-erucic acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C22H41O2">
+      <species metaid="M_MAM01583c" sboTerm="SBO:0000247" id="M_MAM01583c" name="cis-erucic acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C22H41O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01583c">
+            <rdf:Description rdf:about="#M_MAM01583c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:28792"/>
@@ -40743,10 +40742,10 @@
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-      <species metaid="MAM01583l" sboTerm="SBO:0000247" id="MAM01583l" name="cis-erucic acid" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C22H41O2">
+      <species metaid="M_MAM01583l" sboTerm="SBO:0000247" id="M_MAM01583l" name="cis-erucic acid" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C22H41O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01583l">
+            <rdf:Description rdf:about="#M_MAM01583l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:28792"/>
@@ -40762,10 +40761,10 @@
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-      <species metaid="MAM01583r" sboTerm="SBO:0000247" id="MAM01583r" name="cis-erucic acid" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C22H41O2">
+      <species metaid="M_MAM01583r" sboTerm="SBO:0000247" id="M_MAM01583r" name="cis-erucic acid" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C22H41O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01583r">
+            <rdf:Description rdf:about="#M_MAM01583r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:28792"/>
@@ -40781,10 +40780,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM01583e" sboTerm="SBO:0000247" id="MAM01583e" name="cis-erucic acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C22H41O2">
+      <species metaid="M_MAM01583e" sboTerm="SBO:0000247" id="M_MAM01583e" name="cis-erucic acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C22H41O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01583e">
+            <rdf:Description rdf:about="#M_MAM01583e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:28792"/>
@@ -40800,10 +40799,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01584c" sboTerm="SBO:0000247" id="MAM01584c" name="cis-gondoic acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H37O2">
+      <species metaid="M_MAM01584c" sboTerm="SBO:0000247" id="M_MAM01584c" name="cis-gondoic acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H37O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01584c">
+            <rdf:Description rdf:about="#M_MAM01584c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:32425"/>
@@ -40820,10 +40819,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01584l" sboTerm="SBO:0000247" id="MAM01584l" name="cis-gondoic acid" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H37O2">
+      <species metaid="M_MAM01584l" sboTerm="SBO:0000247" id="M_MAM01584l" name="cis-gondoic acid" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H37O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01584l">
+            <rdf:Description rdf:about="#M_MAM01584l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:32425"/>
@@ -40840,10 +40839,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01584r" sboTerm="SBO:0000247" id="MAM01584r" name="cis-gondoic acid" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H37O2">
+      <species metaid="M_MAM01584r" sboTerm="SBO:0000247" id="M_MAM01584r" name="cis-gondoic acid" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H37O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01584r">
+            <rdf:Description rdf:about="#M_MAM01584r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:32425"/>
@@ -40860,10 +40859,10 @@
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         </annotation>
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-      <species metaid="MAM01584e" sboTerm="SBO:0000247" id="MAM01584e" name="cis-gondoic acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H37O2">
+      <species metaid="M_MAM01584e" sboTerm="SBO:0000247" id="M_MAM01584e" name="cis-gondoic acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H37O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01584e">
+            <rdf:Description rdf:about="#M_MAM01584e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:32425"/>
@@ -40880,10 +40879,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01585c" sboTerm="SBO:0000247" id="MAM01585c" name="cis-vaccenic acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H33O2">
+      <species metaid="M_MAM01585c" sboTerm="SBO:0000247" id="M_MAM01585c" name="cis-vaccenic acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H33O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01585c">
+            <rdf:Description rdf:about="#M_MAM01585c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/vacc"/>
@@ -40900,10 +40899,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01585l" sboTerm="SBO:0000247" id="MAM01585l" name="cis-vaccenic acid" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H33O2">
+      <species metaid="M_MAM01585l" sboTerm="SBO:0000247" id="M_MAM01585l" name="cis-vaccenic acid" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H33O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01585l">
+            <rdf:Description rdf:about="#M_MAM01585l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/vacc"/>
@@ -40920,10 +40919,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01585r" sboTerm="SBO:0000247" id="MAM01585r" name="cis-vaccenic acid" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H33O2">
+      <species metaid="M_MAM01585r" sboTerm="SBO:0000247" id="M_MAM01585r" name="cis-vaccenic acid" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H33O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01585r">
+            <rdf:Description rdf:about="#M_MAM01585r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/vacc"/>
@@ -40940,10 +40939,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01585e" sboTerm="SBO:0000247" id="MAM01585e" name="cis-vaccenic acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H33O2">
+      <species metaid="M_MAM01585e" sboTerm="SBO:0000247" id="M_MAM01585e" name="cis-vaccenic acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H33O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01585e">
+            <rdf:Description rdf:about="#M_MAM01585e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/vacc"/>
@@ -40960,10 +40959,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01586c" sboTerm="SBO:0000247" id="MAM01586c" name="cis-vaccenoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C39H64N7O17P3S">
+      <species metaid="M_MAM01586c" sboTerm="SBO:0000247" id="M_MAM01586c" name="cis-vaccenoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C39H64N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01586c">
+            <rdf:Description rdf:about="#M_MAM01586c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/vacccoa"/>
@@ -40976,10 +40975,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01586m" sboTerm="SBO:0000247" id="MAM01586m" name="cis-vaccenoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C39H64N7O17P3S">
+      <species metaid="M_MAM01586m" sboTerm="SBO:0000247" id="M_MAM01586m" name="cis-vaccenoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C39H64N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01586m">
+            <rdf:Description rdf:about="#M_MAM01586m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/vacccoa"/>
@@ -40992,10 +40991,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01586x" sboTerm="SBO:0000247" id="MAM01586x" name="cis-vaccenoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C39H64N7O17P3S">
+      <species metaid="M_MAM01586x" sboTerm="SBO:0000247" id="M_MAM01586x" name="cis-vaccenoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C39H64N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01586x">
+            <rdf:Description rdf:about="#M_MAM01586x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/vacccoa"/>
@@ -41008,10 +41007,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01586r" sboTerm="SBO:0000247" id="MAM01586r" name="cis-vaccenoyl-CoA" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C39H64N7O17P3S">
+      <species metaid="M_MAM01586r" sboTerm="SBO:0000247" id="M_MAM01586r" name="cis-vaccenoyl-CoA" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C39H64N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01586r">
+            <rdf:Description rdf:about="#M_MAM01586r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/vacccoa"/>
@@ -41024,10 +41023,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01587c" sboTerm="SBO:0000247" id="MAM01587c" name="citrate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C6H5O7">
+      <species metaid="M_MAM01587c" sboTerm="SBO:0000247" id="M_MAM01587c" name="citrate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C6H5O7">
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@@ -41043,10 +41042,10 @@
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@@ -41062,10 +41061,10 @@
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@@ -41081,10 +41080,10 @@
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@@ -41100,10 +41099,10 @@
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@@ -41119,10 +41118,10 @@
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@@ -41138,10 +41137,10 @@
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+      <species metaid="M_MAM01588e" sboTerm="SBO:0000247" id="M_MAM01588e" name="citrulline" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H13N3O3">
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@@ -41157,10 +41156,10 @@
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@@ -41174,10 +41173,10 @@
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+      <species metaid="M_MAM01589m" sboTerm="SBO:0000247" id="M_MAM01589m" name="CL pool" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C13H16O17P2R4">
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@@ -41191,10 +41190,10 @@
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+      <species metaid="M_MAM01590c" sboTerm="SBO:0000247" id="M_MAM01590c" name="CMP" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C9H12N3O8P">
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@@ -41210,10 +41209,10 @@
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+      <species metaid="M_MAM01590g" sboTerm="SBO:0000247" id="M_MAM01590g" name="CMP" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C9H12N3O8P">
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@@ -41229,10 +41228,10 @@
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+      <species metaid="M_MAM01590l" sboTerm="SBO:0000247" id="M_MAM01590l" name="CMP" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C9H12N3O8P">
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@@ -41248,10 +41247,10 @@
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+      <species metaid="M_MAM01590m" sboTerm="SBO:0000247" id="M_MAM01590m" name="CMP" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C9H12N3O8P">
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@@ -41267,10 +41266,10 @@
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+      <species metaid="M_MAM01590n" sboTerm="SBO:0000247" id="M_MAM01590n" name="CMP" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C9H12N3O8P">
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@@ -41286,10 +41285,10 @@
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+      <species metaid="M_MAM01590r" sboTerm="SBO:0000247" id="M_MAM01590r" name="CMP" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C9H12N3O8P">
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@@ -41305,10 +41304,10 @@
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+      <species metaid="M_MAM01590e" sboTerm="SBO:0000247" id="M_MAM01590e" name="CMP" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C9H12N3O8P">
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@@ -41324,10 +41323,10 @@
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+      <species metaid="M_MAM01591c" sboTerm="SBO:0000247" id="M_MAM01591c" name="CMP-2-aminoethylphosphonate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C11H19N4O10P2">
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@@ -41342,10 +41341,10 @@
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+      <species metaid="M_MAM01592c" sboTerm="SBO:0000247" id="M_MAM01592c" name="CMP-N-acetylneuraminate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C20H29N4O16P">
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                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/cmpacna"/>
@@ -41359,10 +41358,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01592g" sboTerm="SBO:0000247" id="MAM01592g" name="CMP-N-acetylneuraminate" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C20H29N4O16P">
+      <species metaid="M_MAM01592g" sboTerm="SBO:0000247" id="M_MAM01592g" name="CMP-N-acetylneuraminate" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C20H29N4O16P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01592g">
+            <rdf:Description rdf:about="#M_MAM01592g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/cmpacna"/>
@@ -41376,10 +41375,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01592n" sboTerm="SBO:0000247" id="MAM01592n" name="CMP-N-acetylneuraminate" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C20H29N4O16P">
+      <species metaid="M_MAM01592n" sboTerm="SBO:0000247" id="M_MAM01592n" name="CMP-N-acetylneuraminate" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C20H29N4O16P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01592n">
+            <rdf:Description rdf:about="#M_MAM01592n">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/cmpacna"/>
@@ -41393,10 +41392,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01593c" sboTerm="SBO:0000247" id="MAM01593c" name="CMP-neuNGc" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C20H29N4O17P">
+      <species metaid="M_MAM01593c" sboTerm="SBO:0000247" id="M_MAM01593c" name="CMP-neuNGc" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C20H29N4O17P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01593c">
+            <rdf:Description rdf:about="#M_MAM01593c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:18098"/>
@@ -41411,10 +41410,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01594c" sboTerm="SBO:0000247" id="MAM01594c" name="CMP-N-trimethyl-2-aminoethylphosphonate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C14H25N4O10P2">
+      <species metaid="M_MAM01594c" sboTerm="SBO:0000247" id="M_MAM01594c" name="CMP-N-trimethyl-2-aminoethylphosphonate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C14H25N4O10P2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01594c">
+            <rdf:Description rdf:about="#M_MAM01594c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/cmpntm2amep"/>
@@ -41429,10 +41428,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01595c" sboTerm="SBO:0000247" id="MAM01595c" name="CO" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="CO">
+      <species metaid="M_MAM01595c" sboTerm="SBO:0000247" id="M_MAM01595c" name="CO" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="CO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01595c">
+            <rdf:Description rdf:about="#M_MAM01595c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/co"/>
@@ -41447,10 +41446,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01595e" sboTerm="SBO:0000247" id="MAM01595e" name="CO" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="CO">
+      <species metaid="M_MAM01595e" sboTerm="SBO:0000247" id="M_MAM01595e" name="CO" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="CO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01595e">
+            <rdf:Description rdf:about="#M_MAM01595e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/co"/>
@@ -41465,10 +41464,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01596c" sboTerm="SBO:0000247" id="MAM01596c" name="CO2" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="CO2">
+      <species metaid="M_MAM01596c" sboTerm="SBO:0000247" id="M_MAM01596c" name="CO2" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="CO2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01596c">
+            <rdf:Description rdf:about="#M_MAM01596c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/co2"/>
@@ -41485,10 +41484,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01596g" sboTerm="SBO:0000247" id="MAM01596g" name="CO2" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="CO2">
+      <species metaid="M_MAM01596g" sboTerm="SBO:0000247" id="M_MAM01596g" name="CO2" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="CO2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01596g">
+            <rdf:Description rdf:about="#M_MAM01596g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/co2"/>
@@ -41505,10 +41504,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01596m" sboTerm="SBO:0000247" id="MAM01596m" name="CO2" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="CO2">
+      <species metaid="M_MAM01596m" sboTerm="SBO:0000247" id="M_MAM01596m" name="CO2" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="CO2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01596m">
+            <rdf:Description rdf:about="#M_MAM01596m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/co2"/>
@@ -41525,10 +41524,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01596x" sboTerm="SBO:0000247" id="MAM01596x" name="CO2" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="CO2">
+      <species metaid="M_MAM01596x" sboTerm="SBO:0000247" id="M_MAM01596x" name="CO2" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="CO2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01596x">
+            <rdf:Description rdf:about="#M_MAM01596x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/co2"/>
@@ -41545,10 +41544,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01596r" sboTerm="SBO:0000247" id="MAM01596r" name="CO2" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="CO2">
+      <species metaid="M_MAM01596r" sboTerm="SBO:0000247" id="M_MAM01596r" name="CO2" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="CO2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01596r">
+            <rdf:Description rdf:about="#M_MAM01596r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/co2"/>
@@ -41565,10 +41564,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01596e" sboTerm="SBO:0000247" id="MAM01596e" name="CO2" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="CO2">
+      <species metaid="M_MAM01596e" sboTerm="SBO:0000247" id="M_MAM01596e" name="CO2" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="CO2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01596e">
+            <rdf:Description rdf:about="#M_MAM01596e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/co2"/>
@@ -41585,10 +41584,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01597c" sboTerm="SBO:0000247" id="MAM01597c" name="CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C21H32N7O16P3S">
+      <species metaid="M_MAM01597c" sboTerm="SBO:0000247" id="M_MAM01597c" name="CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C21H32N7O16P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01597c">
+            <rdf:Description rdf:about="#M_MAM01597c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/coa"/>
@@ -41604,10 +41603,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01597g" sboTerm="SBO:0000247" id="MAM01597g" name="CoA" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C21H32N7O16P3S">
+      <species metaid="M_MAM01597g" sboTerm="SBO:0000247" id="M_MAM01597g" name="CoA" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C21H32N7O16P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01597g">
+            <rdf:Description rdf:about="#M_MAM01597g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/coa"/>
@@ -41623,10 +41622,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01597l" sboTerm="SBO:0000247" id="MAM01597l" name="CoA" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C21H32N7O16P3S">
+      <species metaid="M_MAM01597l" sboTerm="SBO:0000247" id="M_MAM01597l" name="CoA" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C21H32N7O16P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01597l">
+            <rdf:Description rdf:about="#M_MAM01597l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/coa"/>
@@ -41642,10 +41641,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01597m" sboTerm="SBO:0000247" id="MAM01597m" name="CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C21H32N7O16P3S">
+      <species metaid="M_MAM01597m" sboTerm="SBO:0000247" id="M_MAM01597m" name="CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C21H32N7O16P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01597m">
+            <rdf:Description rdf:about="#M_MAM01597m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/coa"/>
@@ -41661,10 +41660,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01597n" sboTerm="SBO:0000247" id="MAM01597n" name="CoA" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C21H32N7O16P3S">
+      <species metaid="M_MAM01597n" sboTerm="SBO:0000247" id="M_MAM01597n" name="CoA" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C21H32N7O16P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01597n">
+            <rdf:Description rdf:about="#M_MAM01597n">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/coa"/>
@@ -41680,10 +41679,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01597x" sboTerm="SBO:0000247" id="MAM01597x" name="CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C21H32N7O16P3S">
+      <species metaid="M_MAM01597x" sboTerm="SBO:0000247" id="M_MAM01597x" name="CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C21H32N7O16P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01597x">
+            <rdf:Description rdf:about="#M_MAM01597x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/coa"/>
@@ -41699,10 +41698,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01597r" sboTerm="SBO:0000247" id="MAM01597r" name="CoA" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C21H32N7O16P3S">
+      <species metaid="M_MAM01597r" sboTerm="SBO:0000247" id="M_MAM01597r" name="CoA" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C21H32N7O16P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01597r">
+            <rdf:Description rdf:about="#M_MAM01597r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/coa"/>
@@ -41718,10 +41717,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01599c" sboTerm="SBO:0000247" id="MAM01599c" name="cob(II)alamin" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C62H88CoN13O14P">
+      <species metaid="M_MAM01599c" sboTerm="SBO:0000247" id="M_MAM01599c" name="cob(II)alamin" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C62H88CoN13O14P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01599c">
+            <rdf:Description rdf:about="#M_MAM01599c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/cbl2"/>
@@ -41735,10 +41734,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01600m" sboTerm="SBO:0000247" id="MAM01600m" name="cobamide-coenzyme" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C72H100CoN18O17P">
+      <species metaid="M_MAM01600m" sboTerm="SBO:0000247" id="M_MAM01600m" name="cobamide-coenzyme" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C72H100CoN18O17P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01600m">
+            <rdf:Description rdf:about="#M_MAM01600m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/adocbl"/>
@@ -41752,10 +41751,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01601c" sboTerm="SBO:0000247" id="MAM01601c" name="cocaine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C17H21NO4">
+      <species metaid="M_MAM01601c" sboTerm="SBO:0000247" id="M_MAM01601c" name="cocaine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C17H21NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01601c">
+            <rdf:Description rdf:about="#M_MAM01601c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/coke"/>
@@ -41771,10 +41770,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01601r" sboTerm="SBO:0000247" id="MAM01601r" name="cocaine" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C17H21NO4">
+      <species metaid="M_MAM01601r" sboTerm="SBO:0000247" id="M_MAM01601r" name="cocaine" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C17H21NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01601r">
+            <rdf:Description rdf:about="#M_MAM01601r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/coke"/>
@@ -41790,10 +41789,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01603c" sboTerm="SBO:0000247" id="MAM01603c" name="coproporphyrin I" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C36H34N4O8">
+      <species metaid="M_MAM01603c" sboTerm="SBO:0000247" id="M_MAM01603c" name="coproporphyrin I" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C36H34N4O8">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01603c">
+            <rdf:Description rdf:about="#M_MAM01603c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:28421"/>
@@ -41807,10 +41806,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01603e" sboTerm="SBO:0000247" id="MAM01603e" name="coproporphyrin I" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C36H34N4O8">
+      <species metaid="M_MAM01603e" sboTerm="SBO:0000247" id="M_MAM01603e" name="coproporphyrin I" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C36H34N4O8">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01603e">
+            <rdf:Description rdf:about="#M_MAM01603e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:28421"/>
@@ -41824,10 +41823,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01604c" sboTerm="SBO:0000247" id="MAM01604c" name="coproporphyrin III" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C36H34N4O8">
+      <species metaid="M_MAM01604c" sboTerm="SBO:0000247" id="M_MAM01604c" name="coproporphyrin III" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C36H34N4O8">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01604c">
+            <rdf:Description rdf:about="#M_MAM01604c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:27609"/>
@@ -41845,10 +41844,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01604e" sboTerm="SBO:0000247" id="MAM01604e" name="coproporphyrin III" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C36H34N4O8">
+      <species metaid="M_MAM01604e" sboTerm="SBO:0000247" id="M_MAM01604e" name="coproporphyrin III" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C36H34N4O8">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01604e">
+            <rdf:Description rdf:about="#M_MAM01604e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:27609"/>
@@ -41866,10 +41865,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01605c" sboTerm="SBO:0000247" id="MAM01605c" name="coproporphyrinogen I" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C36H40N4O8">
+      <species metaid="M_MAM01605c" sboTerm="SBO:0000247" id="M_MAM01605c" name="coproporphyrinogen I" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C36H40N4O8">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01605c">
+            <rdf:Description rdf:about="#M_MAM01605c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/cpppg1"/>
@@ -41885,10 +41884,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01606c" sboTerm="SBO:0000247" id="MAM01606c" name="coproporphyrinogen III" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C36H40N4O8">
+      <species metaid="M_MAM01606c" sboTerm="SBO:0000247" id="M_MAM01606c" name="coproporphyrinogen III" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C36H40N4O8">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01606c">
+            <rdf:Description rdf:about="#M_MAM01606c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/cpppg3"/>
@@ -41904,10 +41903,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01607g" sboTerm="SBO:0000247" id="MAM01607g" name="core 2" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C22H37N2O15X">
+      <species metaid="M_MAM01607g" sboTerm="SBO:0000247" id="M_MAM01607g" name="core 2" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C22H37N2O15X">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01607g">
+            <rdf:Description rdf:about="#M_MAM01607g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/core2"/>
@@ -41920,10 +41919,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01608g" sboTerm="SBO:0000247" id="MAM01608g" name="core 3" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C16H27N2O10X">
+      <species metaid="M_MAM01608g" sboTerm="SBO:0000247" id="M_MAM01608g" name="core 3" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C16H27N2O10X">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01608g">
+            <rdf:Description rdf:about="#M_MAM01608g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/core3"/>
@@ -41937,10 +41936,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01609g" sboTerm="SBO:0000247" id="MAM01609g" name="core 4" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C24H40N3O15X">
+      <species metaid="M_MAM01609g" sboTerm="SBO:0000247" id="M_MAM01609g" name="core 4" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C24H40N3O15X">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01609g">
+            <rdf:Description rdf:about="#M_MAM01609g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/core4"/>
@@ -41954,10 +41953,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01610g" sboTerm="SBO:0000247" id="MAM01610g" name="core 5" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C16H27N2O10X">
+      <species metaid="M_MAM01610g" sboTerm="SBO:0000247" id="M_MAM01610g" name="core 5" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C16H27N2O10X">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01610g">
+            <rdf:Description rdf:about="#M_MAM01610g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/core5"/>
@@ -41969,10 +41968,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01610c" sboTerm="SBO:0000247" id="MAM01610c" name="core 5" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C16H27N2O10X">
+      <species metaid="M_MAM01610c" sboTerm="SBO:0000247" id="M_MAM01610c" name="core 5" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C16H27N2O10X">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01610c">
+            <rdf:Description rdf:about="#M_MAM01610c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/core5"/>
@@ -41984,10 +41983,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01610e" sboTerm="SBO:0000247" id="MAM01610e" name="core 5" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C16H27N2O10X">
+      <species metaid="M_MAM01610e" sboTerm="SBO:0000247" id="M_MAM01610e" name="core 5" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C16H27N2O10X">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01610e">
+            <rdf:Description rdf:about="#M_MAM01610e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/core5"/>
@@ -41999,10 +41998,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01611g" sboTerm="SBO:0000247" id="MAM01611g" name="core 6" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C16H27N2O10X">
+      <species metaid="M_MAM01611g" sboTerm="SBO:0000247" id="M_MAM01611g" name="core 6" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C16H27N2O10X">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01611g">
+            <rdf:Description rdf:about="#M_MAM01611g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/core6"/>
@@ -42014,10 +42013,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01611l" sboTerm="SBO:0000247" id="MAM01611l" name="core 6" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C16H27N2O10X">
+      <species metaid="M_MAM01611l" sboTerm="SBO:0000247" id="M_MAM01611l" name="core 6" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C16H27N2O10X">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01611l">
+            <rdf:Description rdf:about="#M_MAM01611l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/core6"/>
@@ -42029,10 +42028,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01612g" sboTerm="SBO:0000247" id="MAM01612g" name="core 7" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C16H27N2O10X">
+      <species metaid="M_MAM01612g" sboTerm="SBO:0000247" id="M_MAM01612g" name="core 7" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C16H27N2O10X">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01612g">
+            <rdf:Description rdf:about="#M_MAM01612g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/core7"/>
@@ -42044,10 +42043,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01612c" sboTerm="SBO:0000247" id="MAM01612c" name="core 7" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C16H27N2O10X">
+      <species metaid="M_MAM01612c" sboTerm="SBO:0000247" id="M_MAM01612c" name="core 7" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C16H27N2O10X">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01612c">
+            <rdf:Description rdf:about="#M_MAM01612c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/core7"/>
@@ -42059,10 +42058,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01612e" sboTerm="SBO:0000247" id="MAM01612e" name="core 7" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C16H27N2O10X">
+      <species metaid="M_MAM01612e" sboTerm="SBO:0000247" id="M_MAM01612e" name="core 7" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C16H27N2O10X">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01612e">
+            <rdf:Description rdf:about="#M_MAM01612e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/core7"/>
@@ -42074,10 +42073,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01613g" sboTerm="SBO:0000247" id="MAM01613g" name="core 8" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C14H24NO10X">
+      <species metaid="M_MAM01613g" sboTerm="SBO:0000247" id="M_MAM01613g" name="core 8" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C14H24NO10X">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01613g">
+            <rdf:Description rdf:about="#M_MAM01613g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/core8"/>
@@ -42089,10 +42088,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01613c" sboTerm="SBO:0000247" id="MAM01613c" name="core 8" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C14H24NO10X">
+      <species metaid="M_MAM01613c" sboTerm="SBO:0000247" id="M_MAM01613c" name="core 8" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C14H24NO10X">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01613c">
+            <rdf:Description rdf:about="#M_MAM01613c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/core8"/>
@@ -42104,10 +42103,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01613e" sboTerm="SBO:0000247" id="MAM01613e" name="core 8" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C14H24NO10X">
+      <species metaid="M_MAM01613e" sboTerm="SBO:0000247" id="M_MAM01613e" name="core 8" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C14H24NO10X">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01613e">
+            <rdf:Description rdf:about="#M_MAM01613e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/core8"/>
@@ -42119,14 +42118,14 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01614c" sboTerm="SBO:0000247" id="MAM01614c" name="corticosterone" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H30O4">
+      <species metaid="M_MAM01614c" sboTerm="SBO:0000247" id="M_MAM01614c" name="corticosterone" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H30O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01614c">
+            <rdf:Description rdf:about="#M_MAM01614c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/crtstrn"/>
-                  <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:101161"/>
+                  <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:16827"/>
                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/LMST02030092"/>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM162953"/>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM859"/>
@@ -42137,14 +42136,14 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01614m" sboTerm="SBO:0000247" id="MAM01614m" name="corticosterone" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H30O4">
+      <species metaid="M_MAM01614m" sboTerm="SBO:0000247" id="M_MAM01614m" name="corticosterone" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H30O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01614m">
+            <rdf:Description rdf:about="#M_MAM01614m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/crtstrn"/>
-                  <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:101161"/>
+                  <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:16827"/>
                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/LMST02030092"/>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM162953"/>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM859"/>
@@ -42155,14 +42154,14 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01614r" sboTerm="SBO:0000247" id="MAM01614r" name="corticosterone" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H30O4">
+      <species metaid="M_MAM01614r" sboTerm="SBO:0000247" id="M_MAM01614r" name="corticosterone" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H30O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01614r">
+            <rdf:Description rdf:about="#M_MAM01614r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/crtstrn"/>
-                  <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:101161"/>
+                  <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:16827"/>
                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/LMST02030092"/>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM162953"/>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM859"/>
@@ -42173,14 +42172,14 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01614e" sboTerm="SBO:0000247" id="MAM01614e" name="corticosterone" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H30O4">
+      <species metaid="M_MAM01614e" sboTerm="SBO:0000247" id="M_MAM01614e" name="corticosterone" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H30O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01614e">
+            <rdf:Description rdf:about="#M_MAM01614e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/crtstrn"/>
-                  <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:101161"/>
+                  <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:16827"/>
                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/LMST02030092"/>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM162953"/>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM859"/>
@@ -42191,10 +42190,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01615c" sboTerm="SBO:0000247" id="MAM01615c" name="cortisol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H30O5">
+      <species metaid="M_MAM01615c" sboTerm="SBO:0000247" id="M_MAM01615c" name="cortisol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H30O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01615c">
+            <rdf:Description rdf:about="#M_MAM01615c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/crtsl"/>
@@ -42212,10 +42211,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01615m" sboTerm="SBO:0000247" id="MAM01615m" name="cortisol" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H30O5">
+      <species metaid="M_MAM01615m" sboTerm="SBO:0000247" id="M_MAM01615m" name="cortisol" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H30O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01615m">
+            <rdf:Description rdf:about="#M_MAM01615m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/crtsl"/>
@@ -42233,10 +42232,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01615r" sboTerm="SBO:0000247" id="MAM01615r" name="cortisol" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H30O5">
+      <species metaid="M_MAM01615r" sboTerm="SBO:0000247" id="M_MAM01615r" name="cortisol" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H30O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01615r">
+            <rdf:Description rdf:about="#M_MAM01615r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/crtsl"/>
@@ -42254,10 +42253,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01615e" sboTerm="SBO:0000247" id="MAM01615e" name="cortisol" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H30O5">
+      <species metaid="M_MAM01615e" sboTerm="SBO:0000247" id="M_MAM01615e" name="cortisol" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H30O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01615e">
+            <rdf:Description rdf:about="#M_MAM01615e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/crtsl"/>
@@ -42275,10 +42274,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01616c" sboTerm="SBO:0000247" id="MAM01616c" name="cortisone" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H28O5">
+      <species metaid="M_MAM01616c" sboTerm="SBO:0000247" id="M_MAM01616c" name="cortisone" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H28O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01616c">
+            <rdf:Description rdf:about="#M_MAM01616c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/cortsn"/>
@@ -42294,10 +42293,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01616r" sboTerm="SBO:0000247" id="MAM01616r" name="cortisone" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H28O5">
+      <species metaid="M_MAM01616r" sboTerm="SBO:0000247" id="M_MAM01616r" name="cortisone" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H28O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01616r">
+            <rdf:Description rdf:about="#M_MAM01616r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/cortsn"/>
@@ -42313,10 +42312,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01617c" sboTerm="SBO:0000247" id="MAM01617c" name="coumarin" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H6O2">
+      <species metaid="M_MAM01617c" sboTerm="SBO:0000247" id="M_MAM01617c" name="coumarin" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H6O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01617c">
+            <rdf:Description rdf:about="#M_MAM01617c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/coumarin"/>
@@ -42332,10 +42331,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01617e" sboTerm="SBO:0000247" id="MAM01617e" name="coumarin" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H6O2">
+      <species metaid="M_MAM01617e" sboTerm="SBO:0000247" id="M_MAM01617e" name="coumarin" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H6O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01617e">
+            <rdf:Description rdf:about="#M_MAM01617e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/coumarin"/>
@@ -42351,10 +42350,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01618c" sboTerm="SBO:0000247" id="MAM01618c" name="cPMP" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H13N5O8P">
+      <species metaid="M_MAM01618c" sboTerm="SBO:0000247" id="M_MAM01618c" name="cPMP" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H13N5O8P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01618c">
+            <rdf:Description rdf:about="#M_MAM01618c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:60210"/>
@@ -42367,10 +42366,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01619c" sboTerm="SBO:0000247" id="MAM01619c" name="creatine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H9N3O2">
+      <species metaid="M_MAM01619c" sboTerm="SBO:0000247" id="M_MAM01619c" name="creatine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H9N3O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01619c">
+            <rdf:Description rdf:about="#M_MAM01619c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/creat"/>
@@ -42386,10 +42385,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01619m" sboTerm="SBO:0000247" id="MAM01619m" name="creatine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H9N3O2">
+      <species metaid="M_MAM01619m" sboTerm="SBO:0000247" id="M_MAM01619m" name="creatine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H9N3O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01619m">
+            <rdf:Description rdf:about="#M_MAM01619m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/creat"/>
@@ -42405,10 +42404,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01619e" sboTerm="SBO:0000247" id="MAM01619e" name="creatine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H9N3O2">
+      <species metaid="M_MAM01619e" sboTerm="SBO:0000247" id="M_MAM01619e" name="creatine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H9N3O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01619e">
+            <rdf:Description rdf:about="#M_MAM01619e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/creat"/>
@@ -42424,10 +42423,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01620c" sboTerm="SBO:0000247" id="MAM01620c" name="creatine-phosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C4H8N3O5P">
+      <species metaid="M_MAM01620c" sboTerm="SBO:0000247" id="M_MAM01620c" name="creatine-phosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C4H8N3O5P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01620c">
+            <rdf:Description rdf:about="#M_MAM01620c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pcreat"/>
@@ -42444,10 +42443,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01620m" sboTerm="SBO:0000247" id="MAM01620m" name="creatine-phosphate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C4H8N3O5P">
+      <species metaid="M_MAM01620m" sboTerm="SBO:0000247" id="M_MAM01620m" name="creatine-phosphate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C4H8N3O5P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01620m">
+            <rdf:Description rdf:about="#M_MAM01620m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pcreat"/>
@@ -42464,10 +42463,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01621c" sboTerm="SBO:0000247" id="MAM01621c" name="creatinine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H7N3O">
+      <species metaid="M_MAM01621c" sboTerm="SBO:0000247" id="M_MAM01621c" name="creatinine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H7N3O">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01621c">
+            <rdf:Description rdf:about="#M_MAM01621c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/crtn"/>
@@ -42484,10 +42483,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01621e" sboTerm="SBO:0000247" id="MAM01621e" name="creatinine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H7N3O">
+      <species metaid="M_MAM01621e" sboTerm="SBO:0000247" id="M_MAM01621e" name="creatinine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H7N3O">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01621e">
+            <rdf:Description rdf:about="#M_MAM01621e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/crtn"/>
@@ -42504,10 +42503,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01622m" sboTerm="SBO:0000247" id="MAM01622m" name="crotonyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C25H36N7O17P3S">
+      <species metaid="M_MAM01622m" sboTerm="SBO:0000247" id="M_MAM01622m" name="crotonyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C25H36N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01622m">
+            <rdf:Description rdf:about="#M_MAM01622m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/b2coa"/>
@@ -42522,10 +42521,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01622x" sboTerm="SBO:0000247" id="MAM01622x" name="crotonyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C25H36N7O17P3S">
+      <species metaid="M_MAM01622x" sboTerm="SBO:0000247" id="M_MAM01622x" name="crotonyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C25H36N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01622x">
+            <rdf:Description rdf:about="#M_MAM01622x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/b2coa"/>
@@ -42540,10 +42539,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01623c" sboTerm="SBO:0000247" id="MAM01623c" name="CTP" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C9H12N3O14P3">
+      <species metaid="M_MAM01623c" sboTerm="SBO:0000247" id="M_MAM01623c" name="CTP" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C9H12N3O14P3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01623c">
+            <rdf:Description rdf:about="#M_MAM01623c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ctp"/>
@@ -42558,10 +42557,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01623m" sboTerm="SBO:0000247" id="MAM01623m" name="CTP" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C9H12N3O14P3">
+      <species metaid="M_MAM01623m" sboTerm="SBO:0000247" id="M_MAM01623m" name="CTP" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C9H12N3O14P3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01623m">
+            <rdf:Description rdf:about="#M_MAM01623m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ctp"/>
@@ -42576,10 +42575,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01623n" sboTerm="SBO:0000247" id="MAM01623n" name="CTP" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C9H12N3O14P3">
+      <species metaid="M_MAM01623n" sboTerm="SBO:0000247" id="M_MAM01623n" name="CTP" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C9H12N3O14P3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01623n">
+            <rdf:Description rdf:about="#M_MAM01623n">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ctp"/>
@@ -42594,10 +42593,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01623e" sboTerm="SBO:0000247" id="MAM01623e" name="CTP" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C9H12N3O14P3">
+      <species metaid="M_MAM01623e" sboTerm="SBO:0000247" id="M_MAM01623e" name="CTP" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C9H12N3O14P3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01623e">
+            <rdf:Description rdf:about="#M_MAM01623e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ctp"/>
@@ -42612,10 +42611,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01624c" sboTerm="SBO:0000247" id="MAM01624c" name="Cu2+" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="Cu">
+      <species metaid="M_MAM01624c" sboTerm="SBO:0000247" id="M_MAM01624c" name="Cu2+" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="Cu">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01624c">
+            <rdf:Description rdf:about="#M_MAM01624c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:29036"/>
@@ -42627,10 +42626,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01624e" sboTerm="SBO:0000247" id="MAM01624e" name="Cu2+" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="Cu">
+      <species metaid="M_MAM01624e" sboTerm="SBO:0000247" id="M_MAM01624e" name="Cu2+" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="Cu">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01624e">
+            <rdf:Description rdf:about="#M_MAM01624e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:29036"/>
@@ -42642,10 +42641,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01625c" sboTerm="SBO:0000247" id="MAM01625c" name="cyclic-3-hydroxymelatonin" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C13H16N2O3">
+      <species metaid="M_MAM01625c" sboTerm="SBO:0000247" id="M_MAM01625c" name="cyclic-3-hydroxymelatonin" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C13H16N2O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01625c">
+            <rdf:Description rdf:about="#M_MAM01625c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM154973"/>
@@ -42656,10 +42655,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01626c" sboTerm="SBO:0000247" id="MAM01626c" name="cys-gly" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H10N2O3S">
+      <species metaid="M_MAM01626c" sboTerm="SBO:0000247" id="M_MAM01626c" name="cys-gly" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H10N2O3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01626c">
+            <rdf:Description rdf:about="#M_MAM01626c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/cgly"/>
@@ -42675,10 +42674,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01626e" sboTerm="SBO:0000247" id="MAM01626e" name="cys-gly" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H10N2O3S">
+      <species metaid="M_MAM01626e" sboTerm="SBO:0000247" id="M_MAM01626e" name="cys-gly" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H10N2O3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01626e">
+            <rdf:Description rdf:about="#M_MAM01626e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/cgly"/>
@@ -42694,10 +42693,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01627c" sboTerm="SBO:0000247" id="MAM01627c" name="cysteamine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C2H8NS">
+      <species metaid="M_MAM01627c" sboTerm="SBO:0000247" id="M_MAM01627c" name="cysteamine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C2H8NS">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01627c">
+            <rdf:Description rdf:about="#M_MAM01627c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/cysam"/>
@@ -42713,10 +42712,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01628c" sboTerm="SBO:0000247" id="MAM01628c" name="cysteine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H7NO2S">
+      <species metaid="M_MAM01628c" sboTerm="SBO:0000247" id="M_MAM01628c" name="cysteine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H7NO2S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01628c">
+            <rdf:Description rdf:about="#M_MAM01628c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/cys__L"/>
@@ -42732,10 +42731,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01628l" sboTerm="SBO:0000247" id="MAM01628l" name="cysteine" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H7NO2S">
+      <species metaid="M_MAM01628l" sboTerm="SBO:0000247" id="M_MAM01628l" name="cysteine" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H7NO2S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01628l">
+            <rdf:Description rdf:about="#M_MAM01628l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/cys__L"/>
@@ -42751,10 +42750,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01628m" sboTerm="SBO:0000247" id="MAM01628m" name="cysteine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H7NO2S">
+      <species metaid="M_MAM01628m" sboTerm="SBO:0000247" id="M_MAM01628m" name="cysteine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H7NO2S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01628m">
+            <rdf:Description rdf:about="#M_MAM01628m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/cys__L"/>
@@ -42770,10 +42769,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01628e" sboTerm="SBO:0000247" id="MAM01628e" name="cysteine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H7NO2S">
+      <species metaid="M_MAM01628e" sboTerm="SBO:0000247" id="M_MAM01628e" name="cysteine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H7NO2S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01628e">
+            <rdf:Description rdf:about="#M_MAM01628e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/cys__L"/>
@@ -42789,10 +42788,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01629c" sboTerm="SBO:0000247" id="MAM01629c" name="cystine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H12N2O4S2">
+      <species metaid="M_MAM01629c" sboTerm="SBO:0000247" id="M_MAM01629c" name="cystine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H12N2O4S2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01629c">
+            <rdf:Description rdf:about="#M_MAM01629c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/cysi__L"/>
@@ -42809,10 +42808,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01629e" sboTerm="SBO:0000247" id="MAM01629e" name="cystine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H12N2O4S2">
+      <species metaid="M_MAM01629e" sboTerm="SBO:0000247" id="M_MAM01629e" name="cystine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H12N2O4S2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01629e">
+            <rdf:Description rdf:about="#M_MAM01629e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/cysi__L"/>
@@ -42829,10 +42828,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01630c" sboTerm="SBO:0000247" id="MAM01630c" name="cytidine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H13N3O5">
+      <species metaid="M_MAM01630c" sboTerm="SBO:0000247" id="M_MAM01630c" name="cytidine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H13N3O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01630c">
+            <rdf:Description rdf:about="#M_MAM01630c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/cytd"/>
@@ -42848,10 +42847,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01630l" sboTerm="SBO:0000247" id="MAM01630l" name="cytidine" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H13N3O5">
+      <species metaid="M_MAM01630l" sboTerm="SBO:0000247" id="M_MAM01630l" name="cytidine" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H13N3O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01630l">
+            <rdf:Description rdf:about="#M_MAM01630l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/cytd"/>
@@ -42867,10 +42866,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01630m" sboTerm="SBO:0000247" id="MAM01630m" name="cytidine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H13N3O5">
+      <species metaid="M_MAM01630m" sboTerm="SBO:0000247" id="M_MAM01630m" name="cytidine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H13N3O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01630m">
+            <rdf:Description rdf:about="#M_MAM01630m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/cytd"/>
@@ -42886,10 +42885,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01630n" sboTerm="SBO:0000247" id="MAM01630n" name="cytidine" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H13N3O5">
+      <species metaid="M_MAM01630n" sboTerm="SBO:0000247" id="M_MAM01630n" name="cytidine" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H13N3O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01630n">
+            <rdf:Description rdf:about="#M_MAM01630n">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/cytd"/>
@@ -42905,10 +42904,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01630e" sboTerm="SBO:0000247" id="MAM01630e" name="cytidine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H13N3O5">
+      <species metaid="M_MAM01630e" sboTerm="SBO:0000247" id="M_MAM01630e" name="cytidine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H13N3O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01630e">
+            <rdf:Description rdf:about="#M_MAM01630e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/cytd"/>
@@ -42924,13 +42923,13 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01631m" sboTerm="SBO:0000247" id="MAM01631m" name="cytochrome-C" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C1612H2513FeN447O449S20">
+      <species metaid="M_MAM01631m" sboTerm="SBO:0000247" id="M_MAM01631m" name="cytochrome-C" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C1612H2513FeN447O449S20">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01631m">
+            <rdf:Description rdf:about="#M_MAM01631m">
               <bqbiol:is>
                 <rdf:Bag>
-                  <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:18070"/>
+                  <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:83739"/>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C00524"/>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM5749"/>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M01631"/>
@@ -42940,10 +42939,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01632c" sboTerm="SBO:0000247" id="MAM01632c" name="cytosine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H5N3O">
+      <species metaid="M_MAM01632c" sboTerm="SBO:0000247" id="M_MAM01632c" name="cytosine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H5N3O">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01632c">
+            <rdf:Description rdf:about="#M_MAM01632c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/csn"/>
@@ -42959,10 +42958,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01632e" sboTerm="SBO:0000247" id="MAM01632e" name="cytosine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H5N3O">
+      <species metaid="M_MAM01632e" sboTerm="SBO:0000247" id="M_MAM01632e" name="cytosine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H5N3O">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01632e">
+            <rdf:Description rdf:about="#M_MAM01632e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/csn"/>
@@ -42978,10 +42977,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01633c" sboTerm="SBO:0000247" id="MAM01633c" name="D-3-amino-isobutanoate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H9NO2">
+      <species metaid="M_MAM01633c" sboTerm="SBO:0000247" id="M_MAM01633c" name="D-3-amino-isobutanoate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H9NO2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01633c">
+            <rdf:Description rdf:about="#M_MAM01633c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/3aib__D"/>
@@ -42997,10 +42996,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01633m" sboTerm="SBO:0000247" id="MAM01633m" name="D-3-amino-isobutanoate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H9NO2">
+      <species metaid="M_MAM01633m" sboTerm="SBO:0000247" id="M_MAM01633m" name="D-3-amino-isobutanoate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H9NO2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01633m">
+            <rdf:Description rdf:about="#M_MAM01633m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/3aib__D"/>
@@ -43016,10 +43015,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01633e" sboTerm="SBO:0000247" id="MAM01633e" name="D-3-amino-isobutanoate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H9NO2">
+      <species metaid="M_MAM01633e" sboTerm="SBO:0000247" id="M_MAM01633e" name="D-3-amino-isobutanoate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H9NO2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01633e">
+            <rdf:Description rdf:about="#M_MAM01633e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/3aib__D"/>
@@ -43035,10 +43034,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01634c" sboTerm="SBO:0000247" id="MAM01634c" name="D-3-hydroxydodecanoyl-[ACP]" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C23H43N2O9PRS">
+      <species metaid="M_MAM01634c" sboTerm="SBO:0000247" id="M_MAM01634c" name="D-3-hydroxydodecanoyl-[ACP]" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C23H43N2O9PRS">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01634c">
+            <rdf:Description rdf:about="#M_MAM01634c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C05757"/>
@@ -43050,10 +43049,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01635c" sboTerm="SBO:0000247" id="MAM01635c" name="D-3-hydroxyhexanoyl-[ACP]" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C17H31N2O9PRS">
+      <species metaid="M_MAM01635c" sboTerm="SBO:0000247" id="M_MAM01635c" name="D-3-hydroxyhexanoyl-[ACP]" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C17H31N2O9PRS">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01635c">
+            <rdf:Description rdf:about="#M_MAM01635c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C05747"/>
@@ -43065,10 +43064,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01636c" sboTerm="SBO:0000247" id="MAM01636c" name="D-4-phosphopantothenate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C9H15NO8P">
+      <species metaid="M_MAM01636c" sboTerm="SBO:0000247" id="M_MAM01636c" name="D-4-phosphopantothenate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C9H15NO8P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01636c">
+            <rdf:Description rdf:about="#M_MAM01636c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/4ppan"/>
@@ -43083,10 +43082,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01637c" sboTerm="SBO:0000247" id="MAM01637c" name="dADP" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C10H12N5O9P2">
+      <species metaid="M_MAM01637c" sboTerm="SBO:0000247" id="M_MAM01637c" name="dADP" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C10H12N5O9P2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01637c">
+            <rdf:Description rdf:about="#M_MAM01637c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dadp"/>
@@ -43102,10 +43101,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01637m" sboTerm="SBO:0000247" id="MAM01637m" name="dADP" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C10H12N5O9P2">
+      <species metaid="M_MAM01637m" sboTerm="SBO:0000247" id="M_MAM01637m" name="dADP" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C10H12N5O9P2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01637m">
+            <rdf:Description rdf:about="#M_MAM01637m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dadp"/>
@@ -43121,10 +43120,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01637n" sboTerm="SBO:0000247" id="MAM01637n" name="dADP" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C10H12N5O9P2">
+      <species metaid="M_MAM01637n" sboTerm="SBO:0000247" id="M_MAM01637n" name="dADP" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C10H12N5O9P2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01637n">
+            <rdf:Description rdf:about="#M_MAM01637n">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dadp"/>
@@ -43140,10 +43139,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01638c" sboTerm="SBO:0000247" id="MAM01638c" name="D-alanine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H7NO2">
+      <species metaid="M_MAM01638c" sboTerm="SBO:0000247" id="M_MAM01638c" name="D-alanine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H7NO2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01638c">
+            <rdf:Description rdf:about="#M_MAM01638c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ala__D"/>
@@ -43159,10 +43158,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01638l" sboTerm="SBO:0000247" id="MAM01638l" name="D-alanine" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H7NO2">
+      <species metaid="M_MAM01638l" sboTerm="SBO:0000247" id="M_MAM01638l" name="D-alanine" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H7NO2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01638l">
+            <rdf:Description rdf:about="#M_MAM01638l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ala__D"/>
@@ -43178,10 +43177,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01638x" sboTerm="SBO:0000247" id="MAM01638x" name="D-alanine" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H7NO2">
+      <species metaid="M_MAM01638x" sboTerm="SBO:0000247" id="M_MAM01638x" name="D-alanine" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H7NO2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01638x">
+            <rdf:Description rdf:about="#M_MAM01638x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ala__D"/>
@@ -43197,10 +43196,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01638e" sboTerm="SBO:0000247" id="MAM01638e" name="D-alanine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H7NO2">
+      <species metaid="M_MAM01638e" sboTerm="SBO:0000247" id="M_MAM01638e" name="D-alanine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H7NO2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01638e">
+            <rdf:Description rdf:about="#M_MAM01638e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ala__D"/>
@@ -43216,10 +43215,28 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01639c" sboTerm="SBO:0000247" id="MAM01639c" name="dAMP" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C10H12N5O6P">
+      <species metaid="M_MAM01639c" sboTerm="SBO:0000247" id="M_MAM01639c" name="dAMP" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C10H12N5O6P">
+        <annotation>
+          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+            <rdf:Description rdf:about="#M_MAM01639c">
+              <bqbiol:is>
+                <rdf:Bag>
+                  <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/damp"/>
+                  <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:17713"/>
+                  <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C00360"/>
+                  <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM432"/>
+                  <rdf:li rdf:resource="https://identifiers.org/pubchem.compound/12599"/>
+                  <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/damp"/>
+                </rdf:Bag>
+              </bqbiol:is>
+            </rdf:Description>
+          </rdf:RDF>
+        </annotation>
+      </species>
+      <species metaid="M_MAM01639l" sboTerm="SBO:0000247" id="M_MAM01639l" name="dAMP" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C10H12N5O6P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01639c">
+            <rdf:Description rdf:about="#M_MAM01639l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/damp"/>
@@ -43234,10 +43251,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01639l" sboTerm="SBO:0000247" id="MAM01639l" name="dAMP" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C10H12N5O6P">
+      <species metaid="M_MAM01639n" sboTerm="SBO:0000247" id="M_MAM01639n" name="dAMP" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C10H12N5O6P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01639l">
+            <rdf:Description rdf:about="#M_MAM01639n">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/damp"/>
@@ -43252,10 +43269,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01640c" sboTerm="SBO:0000247" id="MAM01640c" name="D-arginine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C6H15N4O2">
+      <species metaid="M_MAM01640c" sboTerm="SBO:0000247" id="M_MAM01640c" name="D-arginine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C6H15N4O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01640c">
+            <rdf:Description rdf:about="#M_MAM01640c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/arg__D"/>
@@ -43272,10 +43289,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01640x" sboTerm="SBO:0000247" id="MAM01640x" name="D-arginine" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C6H15N4O2">
+      <species metaid="M_MAM01640x" sboTerm="SBO:0000247" id="M_MAM01640x" name="D-arginine" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C6H15N4O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01640x">
+            <rdf:Description rdf:about="#M_MAM01640x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/arg__D"/>
@@ -43292,10 +43309,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01640e" sboTerm="SBO:0000247" id="MAM01640e" name="D-arginine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C6H15N4O2">
+      <species metaid="M_MAM01640e" sboTerm="SBO:0000247" id="M_MAM01640e" name="D-arginine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C6H15N4O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01640e">
+            <rdf:Description rdf:about="#M_MAM01640e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/arg__D"/>
@@ -43312,10 +43329,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01641c" sboTerm="SBO:0000247" id="MAM01641c" name="D-aspartate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C4H6NO4">
+      <species metaid="M_MAM01641c" sboTerm="SBO:0000247" id="M_MAM01641c" name="D-aspartate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C4H6NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01641c">
+            <rdf:Description rdf:about="#M_MAM01641c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/asp__D"/>
@@ -43331,10 +43348,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01641x" sboTerm="SBO:0000247" id="MAM01641x" name="D-aspartate" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C4H6NO4">
+      <species metaid="M_MAM01641x" sboTerm="SBO:0000247" id="M_MAM01641x" name="D-aspartate" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C4H6NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01641x">
+            <rdf:Description rdf:about="#M_MAM01641x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/asp__D"/>
@@ -43350,10 +43367,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01641e" sboTerm="SBO:0000247" id="MAM01641e" name="D-aspartate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C4H6NO4">
+      <species metaid="M_MAM01641e" sboTerm="SBO:0000247" id="M_MAM01641e" name="D-aspartate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C4H6NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01641e">
+            <rdf:Description rdf:about="#M_MAM01641e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/asp__D"/>
@@ -43369,10 +43386,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01642c" sboTerm="SBO:0000247" id="MAM01642c" name="dATP" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C10H12N5O12P3">
+      <species metaid="M_MAM01642c" sboTerm="SBO:0000247" id="M_MAM01642c" name="dATP" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C10H12N5O12P3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01642c">
+            <rdf:Description rdf:about="#M_MAM01642c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/datp"/>
@@ -43388,10 +43405,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01642m" sboTerm="SBO:0000247" id="MAM01642m" name="dATP" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C10H12N5O12P3">
+      <species metaid="M_MAM01642m" sboTerm="SBO:0000247" id="M_MAM01642m" name="dATP" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C10H12N5O12P3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01642m">
+            <rdf:Description rdf:about="#M_MAM01642m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/datp"/>
@@ -43407,10 +43424,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01642n" sboTerm="SBO:0000247" id="MAM01642n" name="dATP" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C10H12N5O12P3">
+      <species metaid="M_MAM01642n" sboTerm="SBO:0000247" id="M_MAM01642n" name="dATP" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C10H12N5O12P3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01642n">
+            <rdf:Description rdf:about="#M_MAM01642n">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/datp"/>
@@ -43426,10 +43443,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01643c" sboTerm="SBO:0000247" id="MAM01643c" name="dCDP" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C9H12N3O10P2">
+      <species metaid="M_MAM01643c" sboTerm="SBO:0000247" id="M_MAM01643c" name="dCDP" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C9H12N3O10P2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01643c">
+            <rdf:Description rdf:about="#M_MAM01643c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dcdp"/>
@@ -43443,10 +43460,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01643m" sboTerm="SBO:0000247" id="MAM01643m" name="dCDP" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C9H12N3O10P2">
+      <species metaid="M_MAM01643m" sboTerm="SBO:0000247" id="M_MAM01643m" name="dCDP" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C9H12N3O10P2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01643m">
+            <rdf:Description rdf:about="#M_MAM01643m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dcdp"/>
@@ -43460,10 +43477,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01643n" sboTerm="SBO:0000247" id="MAM01643n" name="dCDP" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C9H12N3O10P2">
+      <species metaid="M_MAM01643n" sboTerm="SBO:0000247" id="M_MAM01643n" name="dCDP" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C9H12N3O10P2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01643n">
+            <rdf:Description rdf:about="#M_MAM01643n">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dcdp"/>
@@ -43477,10 +43494,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01644c" sboTerm="SBO:0000247" id="MAM01644c" name="dCMP" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C9H12N3O7P">
+      <species metaid="M_MAM01644c" sboTerm="SBO:0000247" id="M_MAM01644c" name="dCMP" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C9H12N3O7P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01644c">
+            <rdf:Description rdf:about="#M_MAM01644c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dcmp"/>
@@ -43495,10 +43512,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01644l" sboTerm="SBO:0000247" id="MAM01644l" name="dCMP" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C9H12N3O7P">
+      <species metaid="M_MAM01644l" sboTerm="SBO:0000247" id="M_MAM01644l" name="dCMP" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C9H12N3O7P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01644l">
+            <rdf:Description rdf:about="#M_MAM01644l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dcmp"/>
@@ -43513,10 +43530,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01644m" sboTerm="SBO:0000247" id="MAM01644m" name="dCMP" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C9H12N3O7P">
+      <species metaid="M_MAM01644m" sboTerm="SBO:0000247" id="M_MAM01644m" name="dCMP" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C9H12N3O7P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01644m">
+            <rdf:Description rdf:about="#M_MAM01644m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dcmp"/>
@@ -43531,10 +43548,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01644n" sboTerm="SBO:0000247" id="MAM01644n" name="dCMP" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C9H12N3O7P">
+      <species metaid="M_MAM01644n" sboTerm="SBO:0000247" id="M_MAM01644n" name="dCMP" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C9H12N3O7P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01644n">
+            <rdf:Description rdf:about="#M_MAM01644n">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dcmp"/>
@@ -43549,10 +43566,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01645c" sboTerm="SBO:0000247" id="MAM01645c" name="dCTP" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C9H12N3O13P3">
+      <species metaid="M_MAM01645c" sboTerm="SBO:0000247" id="M_MAM01645c" name="dCTP" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C9H12N3O13P3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01645c">
+            <rdf:Description rdf:about="#M_MAM01645c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dctp"/>
@@ -43567,10 +43584,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01645m" sboTerm="SBO:0000247" id="MAM01645m" name="dCTP" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C9H12N3O13P3">
+      <species metaid="M_MAM01645m" sboTerm="SBO:0000247" id="M_MAM01645m" name="dCTP" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C9H12N3O13P3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01645m">
+            <rdf:Description rdf:about="#M_MAM01645m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dctp"/>
@@ -43585,10 +43602,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01645n" sboTerm="SBO:0000247" id="MAM01645n" name="dCTP" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C9H12N3O13P3">
+      <species metaid="M_MAM01645n" sboTerm="SBO:0000247" id="M_MAM01645n" name="dCTP" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C9H12N3O13P3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01645n">
+            <rdf:Description rdf:about="#M_MAM01645n">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dctp"/>
@@ -43603,10 +43620,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01646c" sboTerm="SBO:0000247" id="MAM01646c" name="deamido-NAD" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C21H24N6O15P2">
+      <species metaid="M_MAM01646c" sboTerm="SBO:0000247" id="M_MAM01646c" name="deamido-NAD" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C21H24N6O15P2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01646c">
+            <rdf:Description rdf:about="#M_MAM01646c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dnad"/>
@@ -43621,10 +43638,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01646n" sboTerm="SBO:0000247" id="MAM01646n" name="deamido-NAD" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C21H24N6O15P2">
+      <species metaid="M_MAM01646n" sboTerm="SBO:0000247" id="M_MAM01646n" name="deamido-NAD" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C21H24N6O15P2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01646n">
+            <rdf:Description rdf:about="#M_MAM01646n">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dnad"/>
@@ -43639,10 +43656,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01647c" sboTerm="SBO:0000247" id="MAM01647c" name="debrisoquin" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C10H14N3">
+      <species metaid="M_MAM01647c" sboTerm="SBO:0000247" id="M_MAM01647c" name="debrisoquin" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C10H14N3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01647c">
+            <rdf:Description rdf:about="#M_MAM01647c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/debrisoquine"/>
@@ -43658,10 +43675,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01647e" sboTerm="SBO:0000247" id="MAM01647e" name="debrisoquin" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C10H14N3">
+      <species metaid="M_MAM01647e" sboTerm="SBO:0000247" id="M_MAM01647e" name="debrisoquin" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C10H14N3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01647e">
+            <rdf:Description rdf:about="#M_MAM01647e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/debrisoquine"/>
@@ -43677,10 +43694,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01648c" sboTerm="SBO:0000247" id="MAM01648c" name="decanoic acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H19O2">
+      <species metaid="M_MAM01648c" sboTerm="SBO:0000247" id="M_MAM01648c" name="decanoic acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H19O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01648c">
+            <rdf:Description rdf:about="#M_MAM01648c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:30813"/>
@@ -43697,10 +43714,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01648e" sboTerm="SBO:0000247" id="MAM01648e" name="decanoic acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H19O2">
+      <species metaid="M_MAM01648e" sboTerm="SBO:0000247" id="M_MAM01648e" name="decanoic acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H19O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01648e">
+            <rdf:Description rdf:about="#M_MAM01648e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:30813"/>
@@ -43717,10 +43734,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01649c" sboTerm="SBO:0000247" id="MAM01649c" name="decanoyl-[ACP]" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C21H39N2O8PRS">
+      <species metaid="M_MAM01649c" sboTerm="SBO:0000247" id="M_MAM01649c" name="decanoyl-[ACP]" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C21H39N2O8PRS">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01649c">
+            <rdf:Description rdf:about="#M_MAM01649c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C05755"/>
@@ -43732,10 +43749,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01650c" sboTerm="SBO:0000247" id="MAM01650c" name="decanoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C31H50N7O17P3S">
+      <species metaid="M_MAM01650c" sboTerm="SBO:0000247" id="M_MAM01650c" name="decanoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C31H50N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01650c">
+            <rdf:Description rdf:about="#M_MAM01650c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dcacoa"/>
@@ -43753,10 +43770,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01650m" sboTerm="SBO:0000247" id="MAM01650m" name="decanoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C31H50N7O17P3S">
+      <species metaid="M_MAM01650m" sboTerm="SBO:0000247" id="M_MAM01650m" name="decanoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C31H50N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01650m">
+            <rdf:Description rdf:about="#M_MAM01650m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dcacoa"/>
@@ -43774,10 +43791,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01650x" sboTerm="SBO:0000247" id="MAM01650x" name="decanoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C31H50N7O17P3S">
+      <species metaid="M_MAM01650x" sboTerm="SBO:0000247" id="M_MAM01650x" name="decanoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C31H50N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01650x">
+            <rdf:Description rdf:about="#M_MAM01650x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dcacoa"/>
@@ -43795,10 +43812,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01651l" sboTerm="SBO:0000247" id="MAM01651l" name="de-Fuc form of PA6 (wo peptide linkage)" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C84H136N6O62">
+      <species metaid="M_MAM01651l" sboTerm="SBO:0000247" id="M_MAM01651l" name="de-Fuc form of PA6 (wo peptide linkage)" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C84H136N6O62">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01651l">
+            <rdf:Description rdf:about="#M_MAM01651l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/s2l2n2m2m"/>
@@ -43810,10 +43827,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01652l" sboTerm="SBO:0000247" id="MAM01652l" name="de-Fuc form of PA6" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C84H135N6O61X">
+      <species metaid="M_MAM01652l" sboTerm="SBO:0000247" id="M_MAM01652l" name="de-Fuc form of PA6" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C84H135N6O61X">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01652l">
+            <rdf:Description rdf:about="#M_MAM01652l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/s2l2n2m2masn"/>
@@ -43825,10 +43842,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01652e" sboTerm="SBO:0000247" id="MAM01652e" name="de-Fuc form of PA6" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C84H135N6O61X">
+      <species metaid="M_MAM01652e" sboTerm="SBO:0000247" id="M_MAM01652e" name="de-Fuc form of PA6" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C84H135N6O61X">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01652e">
+            <rdf:Description rdf:about="#M_MAM01652e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/s2l2n2m2masn"/>
@@ -43840,10 +43857,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01653l" sboTerm="SBO:0000247" id="MAM01653l" name="de-Fuc, GlcNAc removed PA6 (wo peptide linkage)" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C76H123N5O57">
+      <species metaid="M_MAM01653l" sboTerm="SBO:0000247" id="M_MAM01653l" name="de-Fuc, GlcNAc removed PA6 (wo peptide linkage)" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C76H123N5O57">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01653l">
+            <rdf:Description rdf:about="#M_MAM01653l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/s2l2n2m2mn"/>
@@ -43855,10 +43872,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM01654c" sboTerm="SBO:0000247" id="MAM01654c" name="dehydroalanine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H5NO2">
+      <species metaid="M_MAM01654c" sboTerm="SBO:0000247" id="M_MAM01654c" name="dehydroalanine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H5NO2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01654c">
+            <rdf:Description rdf:about="#M_MAM01654c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/2amac"/>
@@ -43872,10 +43889,10 @@
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-      <species metaid="MAM01655c" sboTerm="SBO:0000247" id="MAM01655c" name="dehydroascorbic acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H5O6">
+      <species metaid="M_MAM01655c" sboTerm="SBO:0000247" id="M_MAM01655c" name="dehydroascorbic acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H5O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01655c">
+            <rdf:Description rdf:about="#M_MAM01655c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dhdascb"/>
@@ -43891,10 +43908,10 @@
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-      <species metaid="MAM01655e" sboTerm="SBO:0000247" id="MAM01655e" name="dehydroascorbic acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H5O6">
+      <species metaid="M_MAM01655e" sboTerm="SBO:0000247" id="M_MAM01655e" name="dehydroascorbic acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H5O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01655e">
+            <rdf:Description rdf:about="#M_MAM01655e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dhdascb"/>
@@ -43910,10 +43927,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01656c" sboTerm="SBO:0000247" id="MAM01656c" name="dehydrodolichol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C100H162O">
+      <species metaid="M_MAM01656c" sboTerm="SBO:0000247" id="M_MAM01656c" name="dehydrodolichol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C100H162O">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01656c">
+            <rdf:Description rdf:about="#M_MAM01656c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dedol__L"/>
@@ -43925,13 +43942,14 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01657c" sboTerm="SBO:0000247" id="MAM01657c" name="dehydrodolichol-diphosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C100H161O7P2">
+      <species metaid="M_MAM01657c" sboTerm="SBO:0000247" id="M_MAM01657c" name="dehydrodolichol-diphosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C100H161O7P2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01657c">
+            <rdf:Description rdf:about="#M_MAM01657c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dedoldp__L"/>
+                  <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:136960"/>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C05859"/>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM148197"/>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/dedoldp_L"/>
@@ -43941,10 +43959,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01658c" sboTerm="SBO:0000247" id="MAM01658c" name="dehydrodolichol-phosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C100H161O4P">
+      <species metaid="M_MAM01658c" sboTerm="SBO:0000247" id="M_MAM01658c" name="dehydrodolichol-phosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C100H161O4P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01658c">
+            <rdf:Description rdf:about="#M_MAM01658c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dedolp__L"/>
@@ -43956,10 +43974,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM01659c" sboTerm="SBO:0000247" id="MAM01659c" name="dehydroepiandrosterone sulfate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C19H27O5S">
+      <species metaid="M_MAM01659c" sboTerm="SBO:0000247" id="M_MAM01659c" name="dehydroepiandrosterone sulfate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C19H27O5S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01659c">
+            <rdf:Description rdf:about="#M_MAM01659c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dheas"/>
@@ -43975,10 +43993,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01659r" sboTerm="SBO:0000247" id="MAM01659r" name="dehydroepiandrosterone sulfate" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C19H27O5S">
+      <species metaid="M_MAM01659r" sboTerm="SBO:0000247" id="M_MAM01659r" name="dehydroepiandrosterone sulfate" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C19H27O5S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01659r">
+            <rdf:Description rdf:about="#M_MAM01659r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dheas"/>
@@ -43994,10 +44012,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01659e" sboTerm="SBO:0000247" id="MAM01659e" name="dehydroepiandrosterone sulfate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C19H27O5S">
+      <species metaid="M_MAM01659e" sboTerm="SBO:0000247" id="M_MAM01659e" name="dehydroepiandrosterone sulfate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C19H27O5S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01659e">
+            <rdf:Description rdf:about="#M_MAM01659e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dheas"/>
@@ -44013,10 +44031,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01660c" sboTerm="SBO:0000247" id="MAM01660c" name="dehydroepiandrosterone" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H28O2">
+      <species metaid="M_MAM01660c" sboTerm="SBO:0000247" id="M_MAM01660c" name="dehydroepiandrosterone" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H28O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01660c">
+            <rdf:Description rdf:about="#M_MAM01660c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dhea"/>
@@ -44034,10 +44052,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01660r" sboTerm="SBO:0000247" id="MAM01660r" name="dehydroepiandrosterone" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H28O2">
+      <species metaid="M_MAM01660r" sboTerm="SBO:0000247" id="M_MAM01660r" name="dehydroepiandrosterone" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H28O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01660r">
+            <rdf:Description rdf:about="#M_MAM01660r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dhea"/>
@@ -44055,10 +44073,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01661c" sboTerm="SBO:0000247" id="MAM01661c" name="dehydrospermidine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="3" fbc:chemicalFormula="C7H20N3">
+      <species metaid="M_MAM01661c" sboTerm="SBO:0000247" id="M_MAM01661c" name="dehydrospermidine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="3" fbc:chemicalFormula="C7H20N3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01661c">
+            <rdf:Description rdf:about="#M_MAM01661c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM4697"/>
@@ -44070,10 +44088,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01662c" sboTerm="SBO:0000247" id="MAM01662c" name="delta-12-prostaglandin J2" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H29O4">
+      <species metaid="M_MAM01662c" sboTerm="SBO:0000247" id="M_MAM01662c" name="delta-12-prostaglandin J2" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H29O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01662c">
+            <rdf:Description rdf:about="#M_MAM01662c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM6638"/>
@@ -44085,10 +44103,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01662r" sboTerm="SBO:0000247" id="MAM01662r" name="delta-12-prostaglandin J2" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H29O4">
+      <species metaid="M_MAM01662r" sboTerm="SBO:0000247" id="M_MAM01662r" name="delta-12-prostaglandin J2" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H29O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01662r">
+            <rdf:Description rdf:about="#M_MAM01662r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM6638"/>
@@ -44100,10 +44118,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01663x" sboTerm="SBO:0000247" id="MAM01663x" name="delta1-piperideine-2-carboxylate" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H9NO2">
+      <species metaid="M_MAM01663x" sboTerm="SBO:0000247" id="M_MAM01663x" name="delta1-piperideine-2-carboxylate" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H9NO2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01663x">
+            <rdf:Description rdf:about="#M_MAM01663x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/1pipdn2c"/>
@@ -44119,10 +44137,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01664x" sboTerm="SBO:0000247" id="MAM01664x" name="delta2-THA-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C45H64N7O17P3S">
+      <species metaid="M_MAM01664x" sboTerm="SBO:0000247" id="M_MAM01664x" name="delta2-THA-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C45H64N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01664x">
+            <rdf:Description rdf:about="#M_MAM01664x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/hmdb/HMDB06260"/>
@@ -44137,10 +44155,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01665r" sboTerm="SBO:0000247" id="MAM01665r" name="dem2emgacpail_prot heparan sulfate" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C39H70N3O38P3R2X">
+      <species metaid="M_MAM01665r" sboTerm="SBO:0000247" id="M_MAM01665r" name="dem2emgacpail_prot heparan sulfate" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C39H70N3O38P3R2X">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01665r">
+            <rdf:Description rdf:about="#M_MAM01665r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dem2emgacpail_prot_hs"/>
@@ -44152,10 +44170,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM01665c" sboTerm="SBO:0000247" id="MAM01665c" name="dem2emgacpail_prot heparan sulfate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C39H70N3O38P3R2X">
+      <species metaid="M_MAM01665c" sboTerm="SBO:0000247" id="M_MAM01665c" name="dem2emgacpail_prot heparan sulfate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C39H70N3O38P3R2X">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01665c">
+            <rdf:Description rdf:about="#M_MAM01665c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dem2emgacpail_prot_hs"/>
@@ -44167,10 +44185,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01665e" sboTerm="SBO:0000247" id="MAM01665e" name="dem2emgacpail_prot heparan sulfate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C39H70N3O38P3R2X">
+      <species metaid="M_MAM01665e" sboTerm="SBO:0000247" id="M_MAM01665e" name="dem2emgacpail_prot heparan sulfate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C39H70N3O38P3R2X">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01665e">
+            <rdf:Description rdf:about="#M_MAM01665e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dem2emgacpail_prot_hs"/>
@@ -44182,10 +44200,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01666c" sboTerm="SBO:0000247" id="MAM01666c" name="deoxyadenosine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H13N5O3">
+      <species metaid="M_MAM01666c" sboTerm="SBO:0000247" id="M_MAM01666c" name="deoxyadenosine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H13N5O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01666c">
+            <rdf:Description rdf:about="#M_MAM01666c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dad_2"/>
@@ -44201,10 +44219,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01666l" sboTerm="SBO:0000247" id="MAM01666l" name="deoxyadenosine" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H13N5O3">
+      <species metaid="M_MAM01666l" sboTerm="SBO:0000247" id="M_MAM01666l" name="deoxyadenosine" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H13N5O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01666l">
+            <rdf:Description rdf:about="#M_MAM01666l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dad_2"/>
@@ -44220,10 +44238,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01666e" sboTerm="SBO:0000247" id="MAM01666e" name="deoxyadenosine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H13N5O3">
+      <species metaid="M_MAM01666e" sboTerm="SBO:0000247" id="M_MAM01666e" name="deoxyadenosine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H13N5O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01666e">
+            <rdf:Description rdf:about="#M_MAM01666e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dad_2"/>
@@ -44239,10 +44257,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01667c" sboTerm="SBO:0000247" id="MAM01667c" name="deoxycholoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C45H70N7O19P3S">
+      <species metaid="M_MAM01667c" sboTerm="SBO:0000247" id="M_MAM01667c" name="deoxycholoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C45H70N7O19P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01667c">
+            <rdf:Description rdf:about="#M_MAM01667c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:58810"/>
@@ -44255,10 +44273,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01667x" sboTerm="SBO:0000247" id="MAM01667x" name="deoxycholoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C45H70N7O19P3S">
+      <species metaid="M_MAM01667x" sboTerm="SBO:0000247" id="M_MAM01667x" name="deoxycholoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C45H70N7O19P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01667x">
+            <rdf:Description rdf:about="#M_MAM01667x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:58810"/>
@@ -44271,10 +44289,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01667r" sboTerm="SBO:0000247" id="MAM01667r" name="deoxycholoyl-CoA" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C45H70N7O19P3S">
+      <species metaid="M_MAM01667r" sboTerm="SBO:0000247" id="M_MAM01667r" name="deoxycholoyl-CoA" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C45H70N7O19P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01667r">
+            <rdf:Description rdf:about="#M_MAM01667r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:58810"/>
@@ -44287,10 +44305,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01668c" sboTerm="SBO:0000247" id="MAM01668c" name="deoxycytidine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H13N3O4">
+      <species metaid="M_MAM01668c" sboTerm="SBO:0000247" id="M_MAM01668c" name="deoxycytidine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H13N3O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01668c">
+            <rdf:Description rdf:about="#M_MAM01668c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dcyt"/>
@@ -44306,10 +44324,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01668l" sboTerm="SBO:0000247" id="MAM01668l" name="deoxycytidine" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H13N3O4">
+      <species metaid="M_MAM01668l" sboTerm="SBO:0000247" id="M_MAM01668l" name="deoxycytidine" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H13N3O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01668l">
+            <rdf:Description rdf:about="#M_MAM01668l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dcyt"/>
@@ -44325,10 +44343,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01668m" sboTerm="SBO:0000247" id="MAM01668m" name="deoxycytidine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H13N3O4">
+      <species metaid="M_MAM01668m" sboTerm="SBO:0000247" id="M_MAM01668m" name="deoxycytidine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H13N3O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01668m">
+            <rdf:Description rdf:about="#M_MAM01668m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dcyt"/>
@@ -44344,10 +44362,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01668n" sboTerm="SBO:0000247" id="MAM01668n" name="deoxycytidine" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H13N3O4">
+      <species metaid="M_MAM01668n" sboTerm="SBO:0000247" id="M_MAM01668n" name="deoxycytidine" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H13N3O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01668n">
+            <rdf:Description rdf:about="#M_MAM01668n">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dcyt"/>
@@ -44363,10 +44381,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01668e" sboTerm="SBO:0000247" id="MAM01668e" name="deoxycytidine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H13N3O4">
+      <species metaid="M_MAM01668e" sboTerm="SBO:0000247" id="M_MAM01668e" name="deoxycytidine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H13N3O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01668e">
+            <rdf:Description rdf:about="#M_MAM01668e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dcyt"/>
@@ -44382,10 +44400,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01669c" sboTerm="SBO:0000247" id="MAM01669c" name="deoxyguanosine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H13N5O4">
+      <species metaid="M_MAM01669c" sboTerm="SBO:0000247" id="M_MAM01669c" name="deoxyguanosine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H13N5O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01669c">
+            <rdf:Description rdf:about="#M_MAM01669c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dgsn"/>
@@ -44401,10 +44419,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01669l" sboTerm="SBO:0000247" id="MAM01669l" name="deoxyguanosine" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H13N5O4">
+      <species metaid="M_MAM01669l" sboTerm="SBO:0000247" id="M_MAM01669l" name="deoxyguanosine" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H13N5O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01669l">
+            <rdf:Description rdf:about="#M_MAM01669l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dgsn"/>
@@ -44420,10 +44438,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01669m" sboTerm="SBO:0000247" id="MAM01669m" name="deoxyguanosine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H13N5O4">
+      <species metaid="M_MAM01669m" sboTerm="SBO:0000247" id="M_MAM01669m" name="deoxyguanosine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H13N5O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01669m">
+            <rdf:Description rdf:about="#M_MAM01669m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dgsn"/>
@@ -44439,10 +44457,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01669e" sboTerm="SBO:0000247" id="MAM01669e" name="deoxyguanosine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H13N5O4">
+      <species metaid="M_MAM01669e" sboTerm="SBO:0000247" id="M_MAM01669e" name="deoxyguanosine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H13N5O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01669e">
+            <rdf:Description rdf:about="#M_MAM01669e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dgsn"/>
@@ -44458,10 +44476,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01670c" sboTerm="SBO:0000247" id="MAM01670c" name="deoxyhypusine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="C10H25N3O2">
+      <species metaid="M_MAM01670c" sboTerm="SBO:0000247" id="M_MAM01670c" name="deoxyhypusine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="C10H25N3O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01670c">
+            <rdf:Description rdf:about="#M_MAM01670c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM49098"/>
@@ -44473,10 +44491,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01671c" sboTerm="SBO:0000247" id="MAM01671c" name="deoxyinosine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H12N4O4">
+      <species metaid="M_MAM01671c" sboTerm="SBO:0000247" id="M_MAM01671c" name="deoxyinosine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H12N4O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01671c">
+            <rdf:Description rdf:about="#M_MAM01671c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/din"/>
@@ -44492,10 +44510,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01671e" sboTerm="SBO:0000247" id="MAM01671e" name="deoxyinosine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H12N4O4">
+      <species metaid="M_MAM01671e" sboTerm="SBO:0000247" id="M_MAM01671e" name="deoxyinosine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H12N4O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01671e">
+            <rdf:Description rdf:about="#M_MAM01671e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/din"/>
@@ -44511,10 +44529,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01672c" sboTerm="SBO:0000247" id="MAM01672c" name="deoxyribose" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H10O4">
+      <species metaid="M_MAM01672c" sboTerm="SBO:0000247" id="M_MAM01672c" name="deoxyribose" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H10O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01672c">
+            <rdf:Description rdf:about="#M_MAM01672c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/drib"/>
@@ -44531,10 +44549,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01672e" sboTerm="SBO:0000247" id="MAM01672e" name="deoxyribose" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H10O4">
+      <species metaid="M_MAM01672e" sboTerm="SBO:0000247" id="M_MAM01672e" name="deoxyribose" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H10O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01672e">
+            <rdf:Description rdf:about="#M_MAM01672e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/drib"/>
@@ -44551,10 +44569,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01673c" sboTerm="SBO:0000247" id="MAM01673c" name="deoxyuridine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H12N2O5">
+      <species metaid="M_MAM01673c" sboTerm="SBO:0000247" id="M_MAM01673c" name="deoxyuridine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H12N2O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01673c">
+            <rdf:Description rdf:about="#M_MAM01673c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/duri"/>
@@ -44570,10 +44588,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01673m" sboTerm="SBO:0000247" id="MAM01673m" name="deoxyuridine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H12N2O5">
+      <species metaid="M_MAM01673m" sboTerm="SBO:0000247" id="M_MAM01673m" name="deoxyuridine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H12N2O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01673m">
+            <rdf:Description rdf:about="#M_MAM01673m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/duri"/>
@@ -44589,10 +44607,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01673n" sboTerm="SBO:0000247" id="MAM01673n" name="deoxyuridine" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H12N2O5">
+      <species metaid="M_MAM01673n" sboTerm="SBO:0000247" id="M_MAM01673n" name="deoxyuridine" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H12N2O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01673n">
+            <rdf:Description rdf:about="#M_MAM01673n">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/duri"/>
@@ -44608,10 +44626,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01673e" sboTerm="SBO:0000247" id="MAM01673e" name="deoxyuridine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H12N2O5">
+      <species metaid="M_MAM01673e" sboTerm="SBO:0000247" id="M_MAM01673e" name="deoxyuridine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H12N2O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01673e">
+            <rdf:Description rdf:about="#M_MAM01673e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/duri"/>
@@ -44627,10 +44645,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01674c" sboTerm="SBO:0000247" id="MAM01674c" name="dephospho-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C21H33N7O13P2S">
+      <species metaid="M_MAM01674c" sboTerm="SBO:0000247" id="M_MAM01674c" name="dephospho-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C21H33N7O13P2S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01674c">
+            <rdf:Description rdf:about="#M_MAM01674c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dpcoa"/>
@@ -44645,10 +44663,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01674l" sboTerm="SBO:0000247" id="MAM01674l" name="dephospho-CoA" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C21H33N7O13P2S">
+      <species metaid="M_MAM01674l" sboTerm="SBO:0000247" id="M_MAM01674l" name="dephospho-CoA" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C21H33N7O13P2S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01674l">
+            <rdf:Description rdf:about="#M_MAM01674l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dpcoa"/>
@@ -44663,10 +44681,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01674m" sboTerm="SBO:0000247" id="MAM01674m" name="dephospho-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C21H33N7O13P2S">
+      <species metaid="M_MAM01674m" sboTerm="SBO:0000247" id="M_MAM01674m" name="dephospho-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C21H33N7O13P2S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01674m">
+            <rdf:Description rdf:about="#M_MAM01674m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dpcoa"/>
@@ -44681,10 +44699,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01675c" sboTerm="SBO:0000247" id="MAM01675c" name="desmosterol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H44O">
+      <species metaid="M_MAM01675c" sboTerm="SBO:0000247" id="M_MAM01675c" name="desmosterol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H44O">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01675c">
+            <rdf:Description rdf:about="#M_MAM01675c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dsmsterol"/>
@@ -44703,10 +44721,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01676c" sboTerm="SBO:0000247" id="MAM01676c" name="detyrosinated alpha-tubulin" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H6N2O3R2">
+      <species metaid="M_MAM01676c" sboTerm="SBO:0000247" id="M_MAM01676c" name="detyrosinated alpha-tubulin" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H6N2O3R2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01676c">
+            <rdf:Description rdf:about="#M_MAM01676c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C05234"/>
@@ -44718,10 +44736,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01677c" sboTerm="SBO:0000247" id="MAM01677c" name="dextrin(n-1)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C12H22O11">
+      <species metaid="M_MAM01677c" sboTerm="SBO:0000247" id="M_MAM01677c" name="dextrin(n-1)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C12H22O11">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01677c">
+            <rdf:Description rdf:about="#M_MAM01677c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C00721"/>
@@ -44733,10 +44751,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01678c" sboTerm="SBO:0000247" id="MAM01678c" name="dextrin" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H32O16">
+      <species metaid="M_MAM01678c" sboTerm="SBO:0000247" id="M_MAM01678c" name="dextrin" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H32O16">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01678c">
+            <rdf:Description rdf:about="#M_MAM01678c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C00721"/>
@@ -44748,10 +44766,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01679c" sboTerm="SBO:0000247" id="MAM01679c" name="D-galactosyl-N-acylsphingosine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C24H46NO7RCO">
+      <species metaid="M_MAM01679c" sboTerm="SBO:0000247" id="M_MAM01679c" name="D-galactosyl-N-acylsphingosine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C24H46NO7RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01679c">
+            <rdf:Description rdf:about="#M_MAM01679c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/galside_hs"/>
@@ -44765,10 +44783,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01679g" sboTerm="SBO:0000247" id="MAM01679g" name="D-galactosyl-N-acylsphingosine" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C24H46NO7RCO">
+      <species metaid="M_MAM01679g" sboTerm="SBO:0000247" id="M_MAM01679g" name="D-galactosyl-N-acylsphingosine" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C24H46NO7RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01679g">
+            <rdf:Description rdf:about="#M_MAM01679g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/galside_hs"/>
@@ -44782,10 +44800,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01679l" sboTerm="SBO:0000247" id="MAM01679l" name="D-galactosyl-N-acylsphingosine" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C24H46NO7RCO">
+      <species metaid="M_MAM01679l" sboTerm="SBO:0000247" id="M_MAM01679l" name="D-galactosyl-N-acylsphingosine" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C24H46NO7RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01679l">
+            <rdf:Description rdf:about="#M_MAM01679l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/galside_hs"/>
@@ -44799,10 +44817,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01679r" sboTerm="SBO:0000247" id="MAM01679r" name="D-galactosyl-N-acylsphingosine" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C24H46NO7RCO">
+      <species metaid="M_MAM01679r" sboTerm="SBO:0000247" id="M_MAM01679r" name="D-galactosyl-N-acylsphingosine" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C24H46NO7RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01679r">
+            <rdf:Description rdf:about="#M_MAM01679r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/galside_hs"/>
@@ -44816,10 +44834,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01680c" sboTerm="SBO:0000247" id="MAM01680c" name="dGDP" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C10H12N5O10P2">
+      <species metaid="M_MAM01680c" sboTerm="SBO:0000247" id="M_MAM01680c" name="dGDP" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C10H12N5O10P2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01680c">
+            <rdf:Description rdf:about="#M_MAM01680c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dgdp"/>
@@ -44835,10 +44853,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01680m" sboTerm="SBO:0000247" id="MAM01680m" name="dGDP" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C10H12N5O10P2">
+      <species metaid="M_MAM01680m" sboTerm="SBO:0000247" id="M_MAM01680m" name="dGDP" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C10H12N5O10P2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01680m">
+            <rdf:Description rdf:about="#M_MAM01680m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dgdp"/>
@@ -44854,10 +44872,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01680n" sboTerm="SBO:0000247" id="MAM01680n" name="dGDP" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C10H12N5O10P2">
+      <species metaid="M_MAM01680n" sboTerm="SBO:0000247" id="M_MAM01680n" name="dGDP" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C10H12N5O10P2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01680n">
+            <rdf:Description rdf:about="#M_MAM01680n">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dgdp"/>
@@ -44873,10 +44891,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01681c" sboTerm="SBO:0000247" id="MAM01681c" name="D-glucarate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H8O8">
+      <species metaid="M_MAM01681c" sboTerm="SBO:0000247" id="M_MAM01681c" name="D-glucarate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H8O8">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01681c">
+            <rdf:Description rdf:about="#M_MAM01681c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/glcr"/>
@@ -44892,10 +44910,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01682c" sboTerm="SBO:0000247" id="MAM01682c" name="D-glucitol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H14O6">
+      <species metaid="M_MAM01682c" sboTerm="SBO:0000247" id="M_MAM01682c" name="D-glucitol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H14O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01682c">
+            <rdf:Description rdf:about="#M_MAM01682c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/sbt__D"/>
@@ -44911,10 +44929,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01682g" sboTerm="SBO:0000247" id="MAM01682g" name="D-glucitol" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H14O6">
+      <species metaid="M_MAM01682g" sboTerm="SBO:0000247" id="M_MAM01682g" name="D-glucitol" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H14O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01682g">
+            <rdf:Description rdf:about="#M_MAM01682g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/sbt__D"/>
@@ -44930,10 +44948,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01682l" sboTerm="SBO:0000247" id="MAM01682l" name="D-glucitol" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H14O6">
+      <species metaid="M_MAM01682l" sboTerm="SBO:0000247" id="M_MAM01682l" name="D-glucitol" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H14O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01682l">
+            <rdf:Description rdf:about="#M_MAM01682l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/sbt__D"/>
@@ -44949,10 +44967,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01682e" sboTerm="SBO:0000247" id="MAM01682e" name="D-glucitol" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H14O6">
+      <species metaid="M_MAM01682e" sboTerm="SBO:0000247" id="M_MAM01682e" name="D-glucitol" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H14O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01682e">
+            <rdf:Description rdf:about="#M_MAM01682e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/sbt__D"/>
@@ -44968,10 +44986,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01683c" sboTerm="SBO:0000247" id="MAM01683c" name="D-gluconic acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H11O7">
+      <species metaid="M_MAM01683c" sboTerm="SBO:0000247" id="M_MAM01683c" name="D-gluconic acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H11O7">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01683c">
+            <rdf:Description rdf:about="#M_MAM01683c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:33198"/>
@@ -44986,10 +45004,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01684c" sboTerm="SBO:0000247" id="MAM01684c" name="D-glucuronate 1-phosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C6H8O10P">
+      <species metaid="M_MAM01684c" sboTerm="SBO:0000247" id="M_MAM01684c" name="D-glucuronate 1-phosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C6H8O10P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01684c">
+            <rdf:Description rdf:about="#M_MAM01684c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/glcur1p"/>
@@ -45005,10 +45023,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01685c" sboTerm="SBO:0000247" id="MAM01685c" name="D-glucurono-6,3-lactone" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H8O6">
+      <species metaid="M_MAM01685c" sboTerm="SBO:0000247" id="M_MAM01685c" name="D-glucurono-6,3-lactone" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H8O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01685c">
+            <rdf:Description rdf:about="#M_MAM01685c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/glac"/>
@@ -45026,10 +45044,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01685r" sboTerm="SBO:0000247" id="MAM01685r" name="D-glucurono-6,3-lactone" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H8O6">
+      <species metaid="M_MAM01685r" sboTerm="SBO:0000247" id="M_MAM01685r" name="D-glucurono-6,3-lactone" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H8O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01685r">
+            <rdf:Description rdf:about="#M_MAM01685r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/glac"/>
@@ -45047,10 +45065,28 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01686c" sboTerm="SBO:0000247" id="MAM01686c" name="dGMP" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C10H12N5O7P">
+      <species metaid="M_MAM01686c" sboTerm="SBO:0000247" id="M_MAM01686c" name="dGMP" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C10H12N5O7P">
+        <annotation>
+          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+            <rdf:Description rdf:about="#M_MAM01686c">
+              <bqbiol:is>
+                <rdf:Bag>
+                  <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dgmp"/>
+                  <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:16192"/>
+                  <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C00362"/>
+                  <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM546"/>
+                  <rdf:li rdf:resource="https://identifiers.org/pubchem.compound/65059"/>
+                  <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/dgmp"/>
+                </rdf:Bag>
+              </bqbiol:is>
+            </rdf:Description>
+          </rdf:RDF>
+        </annotation>
+      </species>
+      <species metaid="M_MAM01686l" sboTerm="SBO:0000247" id="M_MAM01686l" name="dGMP" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C10H12N5O7P">
         <annotation>
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-            <rdf:Description rdf:about="#MAM01686c">
+            <rdf:Description rdf:about="#M_MAM01686l">
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@@ -45065,10 +45101,10 @@
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+      <species metaid="M_MAM01686m" sboTerm="SBO:0000247" id="M_MAM01686m" name="dGMP" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C10H12N5O7P">
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           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01686l">
+            <rdf:Description rdf:about="#M_MAM01686m">
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@@ -45083,10 +45119,10 @@
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+      <species metaid="M_MAM01686n" sboTerm="SBO:0000247" id="M_MAM01686n" name="dGMP" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C10H12N5O7P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01686m">
+            <rdf:Description rdf:about="#M_MAM01686n">
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@@ -45101,10 +45137,10 @@
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+      <species metaid="M_MAM01687r" sboTerm="SBO:0000247" id="M_MAM01687r" name="dgpi_prot heparan sulfate" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C41H76N4O41P4R2X">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01687r">
+            <rdf:Description rdf:about="#M_MAM01687r">
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@@ -45116,10 +45152,10 @@
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+      <species metaid="M_MAM01687c" sboTerm="SBO:0000247" id="M_MAM01687c" name="dgpi_prot heparan sulfate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C41H76N4O41P4R2X">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01687c">
+            <rdf:Description rdf:about="#M_MAM01687c">
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                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dgpi_prot_hs"/>
@@ -45131,10 +45167,10 @@
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-      <species metaid="MAM01687e" sboTerm="SBO:0000247" id="MAM01687e" name="dgpi_prot heparan sulfate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C41H76N4O41P4R2X">
+      <species metaid="M_MAM01687e" sboTerm="SBO:0000247" id="M_MAM01687e" name="dgpi_prot heparan sulfate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C41H76N4O41P4R2X">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01687e">
+            <rdf:Description rdf:about="#M_MAM01687e">
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                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dgpi_prot_hs"/>
@@ -45146,10 +45182,10 @@
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-      <species metaid="MAM01688c" sboTerm="SBO:0000247" id="MAM01688c" name="dGTP" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C10H12N5O13P3">
+      <species metaid="M_MAM01688c" sboTerm="SBO:0000247" id="M_MAM01688c" name="dGTP" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C10H12N5O13P3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01688c">
+            <rdf:Description rdf:about="#M_MAM01688c">
               <bqbiol:is>
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                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dgtp"/>
@@ -45165,10 +45201,10 @@
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+      <species metaid="M_MAM01688m" sboTerm="SBO:0000247" id="M_MAM01688m" name="dGTP" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C10H12N5O13P3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01688m">
+            <rdf:Description rdf:about="#M_MAM01688m">
               <bqbiol:is>
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@@ -45184,10 +45220,10 @@
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+      <species metaid="M_MAM01688n" sboTerm="SBO:0000247" id="M_MAM01688n" name="dGTP" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C10H12N5O13P3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01688n">
+            <rdf:Description rdf:about="#M_MAM01688n">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dgtp"/>
@@ -45203,10 +45239,10 @@
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+      <species metaid="M_MAM01689c" sboTerm="SBO:0000247" id="M_MAM01689c" name="DHA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C22H31O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01689c">
+            <rdf:Description rdf:about="#M_MAM01689c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/crvnc"/>
@@ -45224,10 +45260,10 @@
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+      <species metaid="M_MAM01689l" sboTerm="SBO:0000247" id="M_MAM01689l" name="DHA" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C22H31O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01689l">
+            <rdf:Description rdf:about="#M_MAM01689l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/crvnc"/>
@@ -45245,10 +45281,10 @@
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-      <species metaid="MAM01689r" sboTerm="SBO:0000247" id="MAM01689r" name="DHA" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C22H31O2">
+      <species metaid="M_MAM01689r" sboTerm="SBO:0000247" id="M_MAM01689r" name="DHA" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C22H31O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01689r">
+            <rdf:Description rdf:about="#M_MAM01689r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/crvnc"/>
@@ -45266,10 +45302,10 @@
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-      <species metaid="MAM01689e" sboTerm="SBO:0000247" id="MAM01689e" name="DHA" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C22H31O2">
+      <species metaid="M_MAM01689e" sboTerm="SBO:0000247" id="M_MAM01689e" name="DHA" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C22H31O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01689e">
+            <rdf:Description rdf:about="#M_MAM01689e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/crvnc"/>
@@ -45287,10 +45323,10 @@
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-      <species metaid="MAM01690c" sboTerm="SBO:0000247" id="MAM01690c" name="DHAP" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C3H5O6P">
+      <species metaid="M_MAM01690c" sboTerm="SBO:0000247" id="M_MAM01690c" name="DHAP" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C3H5O6P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01690c">
+            <rdf:Description rdf:about="#M_MAM01690c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dhap"/>
@@ -45305,10 +45341,10 @@
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-      <species metaid="MAM01690m" sboTerm="SBO:0000247" id="MAM01690m" name="DHAP" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C3H5O6P">
+      <species metaid="M_MAM01690m" sboTerm="SBO:0000247" id="M_MAM01690m" name="DHAP" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C3H5O6P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01690m">
+            <rdf:Description rdf:about="#M_MAM01690m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dhap"/>
@@ -45323,10 +45359,10 @@
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-      <species metaid="MAM01690x" sboTerm="SBO:0000247" id="MAM01690x" name="DHAP" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C3H5O6P">
+      <species metaid="M_MAM01690x" sboTerm="SBO:0000247" id="M_MAM01690x" name="DHAP" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C3H5O6P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01690x">
+            <rdf:Description rdf:about="#M_MAM01690x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dhap"/>
@@ -45341,10 +45377,10 @@
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-      <species metaid="MAM01690e" sboTerm="SBO:0000247" id="MAM01690e" name="DHAP" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C3H5O6P">
+      <species metaid="M_MAM01690e" sboTerm="SBO:0000247" id="M_MAM01690e" name="DHAP" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C3H5O6P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01690e">
+            <rdf:Description rdf:about="#M_MAM01690e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dhap"/>
@@ -45359,10 +45395,10 @@
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-      <species metaid="MAM01691c" sboTerm="SBO:0000247" id="MAM01691c" name="dichloroacetate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C2H1Cl2O2">
+      <species metaid="M_MAM01691c" sboTerm="SBO:0000247" id="M_MAM01691c" name="dichloroacetate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C2H1Cl2O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01691c">
+            <rdf:Description rdf:about="#M_MAM01691c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C11149"/>
@@ -45374,10 +45410,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM01692c" sboTerm="SBO:0000247" id="MAM01692c" name="dichloroacetyl chloride" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C2HCl3O">
+      <species metaid="M_MAM01692c" sboTerm="SBO:0000247" id="M_MAM01692c" name="dichloroacetyl chloride" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C2HCl3O">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01692c">
+            <rdf:Description rdf:about="#M_MAM01692c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:34688"/>
@@ -45390,10 +45426,10 @@
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         </annotation>
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-      <species metaid="MAM01693c" sboTerm="SBO:0000247" id="MAM01693c" name="dIDP" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C10H11N4O10P2">
+      <species metaid="M_MAM01693c" sboTerm="SBO:0000247" id="M_MAM01693c" name="dIDP" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C10H11N4O10P2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01693c">
+            <rdf:Description rdf:about="#M_MAM01693c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/didp"/>
@@ -45408,10 +45444,10 @@
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-      <species metaid="MAM01693m" sboTerm="SBO:0000247" id="MAM01693m" name="dIDP" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C10H11N4O10P2">
+      <species metaid="M_MAM01693m" sboTerm="SBO:0000247" id="M_MAM01693m" name="dIDP" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C10H11N4O10P2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01693m">
+            <rdf:Description rdf:about="#M_MAM01693m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/didp"/>
@@ -45426,10 +45462,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM01693n" sboTerm="SBO:0000247" id="MAM01693n" name="dIDP" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C10H11N4O10P2">
+      <species metaid="M_MAM01693n" sboTerm="SBO:0000247" id="M_MAM01693n" name="dIDP" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C10H11N4O10P2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01693n">
+            <rdf:Description rdf:about="#M_MAM01693n">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/didp"/>
@@ -45444,10 +45480,10 @@
           </rdf:RDF>
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-      <species metaid="MAM01694c" sboTerm="SBO:0000247" id="MAM01694c" name="digalactosylceramide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C30H56NO12RCO">
+      <species metaid="M_MAM01694c" sboTerm="SBO:0000247" id="M_MAM01694c" name="digalactosylceramide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C30H56NO12RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01694c">
+            <rdf:Description rdf:about="#M_MAM01694c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/digalside_hs"/>
@@ -45461,10 +45497,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01694g" sboTerm="SBO:0000247" id="MAM01694g" name="digalactosylceramide" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C30H56NO12RCO">
+      <species metaid="M_MAM01694g" sboTerm="SBO:0000247" id="M_MAM01694g" name="digalactosylceramide" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C30H56NO12RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01694g">
+            <rdf:Description rdf:about="#M_MAM01694g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/digalside_hs"/>
@@ -45478,10 +45514,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01694l" sboTerm="SBO:0000247" id="MAM01694l" name="digalactosylceramide" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C30H56NO12RCO">
+      <species metaid="M_MAM01694l" sboTerm="SBO:0000247" id="M_MAM01694l" name="digalactosylceramide" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C30H56NO12RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01694l">
+            <rdf:Description rdf:about="#M_MAM01694l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/digalside_hs"/>
@@ -45495,10 +45531,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01695c" sboTerm="SBO:0000247" id="MAM01695c" name="digalactosylceramidesulfate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C30H55NO15SRCO">
+      <species metaid="M_MAM01695c" sboTerm="SBO:0000247" id="M_MAM01695c" name="digalactosylceramidesulfate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C30H55NO15SRCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01695c">
+            <rdf:Description rdf:about="#M_MAM01695c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/digalsgalside_hs"/>
@@ -45511,10 +45547,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01695g" sboTerm="SBO:0000247" id="MAM01695g" name="digalactosylceramidesulfate" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C30H55NO15SRCO">
+      <species metaid="M_MAM01695g" sboTerm="SBO:0000247" id="M_MAM01695g" name="digalactosylceramidesulfate" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C30H55NO15SRCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01695g">
+            <rdf:Description rdf:about="#M_MAM01695g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/digalsgalside_hs"/>
@@ -45527,10 +45563,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01695e" sboTerm="SBO:0000247" id="MAM01695e" name="digalactosylceramidesulfate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C30H55NO15SRCO">
+      <species metaid="M_MAM01695e" sboTerm="SBO:0000247" id="M_MAM01695e" name="digalactosylceramidesulfate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C30H55NO15SRCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01695e">
+            <rdf:Description rdf:about="#M_MAM01695e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/digalsgalside_hs"/>
@@ -45543,10 +45579,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01696c" sboTerm="SBO:0000247" id="MAM01696c" name="dihomo-gamma-linolenate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H33O2">
+      <species metaid="M_MAM01696c" sboTerm="SBO:0000247" id="M_MAM01696c" name="dihomo-gamma-linolenate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H33O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01696c">
+            <rdf:Description rdf:about="#M_MAM01696c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dlnlcg"/>
@@ -45564,10 +45600,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01696l" sboTerm="SBO:0000247" id="MAM01696l" name="dihomo-gamma-linolenate" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H33O2">
+      <species metaid="M_MAM01696l" sboTerm="SBO:0000247" id="M_MAM01696l" name="dihomo-gamma-linolenate" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H33O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01696l">
+            <rdf:Description rdf:about="#M_MAM01696l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dlnlcg"/>
@@ -45585,10 +45621,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01696r" sboTerm="SBO:0000247" id="MAM01696r" name="dihomo-gamma-linolenate" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H33O2">
+      <species metaid="M_MAM01696r" sboTerm="SBO:0000247" id="M_MAM01696r" name="dihomo-gamma-linolenate" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H33O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01696r">
+            <rdf:Description rdf:about="#M_MAM01696r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dlnlcg"/>
@@ -45606,10 +45642,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01696e" sboTerm="SBO:0000247" id="MAM01696e" name="dihomo-gamma-linolenate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H33O2">
+      <species metaid="M_MAM01696e" sboTerm="SBO:0000247" id="M_MAM01696e" name="dihomo-gamma-linolenate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H33O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01696e">
+            <rdf:Description rdf:about="#M_MAM01696e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dlnlcg"/>
@@ -45627,10 +45663,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01697c" sboTerm="SBO:0000247" id="MAM01697c" name="dihomo-gamma-linolenoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H64N7O17P3S">
+      <species metaid="M_MAM01697c" sboTerm="SBO:0000247" id="M_MAM01697c" name="dihomo-gamma-linolenoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H64N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01697c">
+            <rdf:Description rdf:about="#M_MAM01697c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dlnlcgcoa"/>
@@ -45648,10 +45684,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01697m" sboTerm="SBO:0000247" id="MAM01697m" name="dihomo-gamma-linolenoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H64N7O17P3S">
+      <species metaid="M_MAM01697m" sboTerm="SBO:0000247" id="M_MAM01697m" name="dihomo-gamma-linolenoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H64N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01697m">
+            <rdf:Description rdf:about="#M_MAM01697m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dlnlcgcoa"/>
@@ -45669,10 +45705,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01697r" sboTerm="SBO:0000247" id="MAM01697r" name="dihomo-gamma-linolenoyl-CoA" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H64N7O17P3S">
+      <species metaid="M_MAM01697r" sboTerm="SBO:0000247" id="M_MAM01697r" name="dihomo-gamma-linolenoyl-CoA" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H64N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01697r">
+            <rdf:Description rdf:about="#M_MAM01697r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dlnlcgcoa"/>
@@ -45690,10 +45726,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01698c" sboTerm="SBO:0000247" id="MAM01698c" name="dihydrobiopterin" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H13N5O3">
+      <species metaid="M_MAM01698c" sboTerm="SBO:0000247" id="M_MAM01698c" name="dihydrobiopterin" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H13N5O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01698c">
+            <rdf:Description rdf:about="#M_MAM01698c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dhbpt"/>
@@ -45709,10 +45745,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01699c" sboTerm="SBO:0000247" id="MAM01699c" name="dihydroceramide pool" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H38NO2RCO">
+      <species metaid="M_MAM01699c" sboTerm="SBO:0000247" id="M_MAM01699c" name="dihydroceramide pool" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H38NO2RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01699c">
+            <rdf:Description rdf:about="#M_MAM01699c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dhcrm_hs"/>
@@ -45726,10 +45762,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01700c" sboTerm="SBO:0000247" id="MAM01700c" name="dihydrofolate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C19H19N7O6">
+      <species metaid="M_MAM01700c" sboTerm="SBO:0000247" id="M_MAM01700c" name="dihydrofolate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C19H19N7O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01700c">
+            <rdf:Description rdf:about="#M_MAM01700c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dhf"/>
@@ -45744,10 +45780,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01700l" sboTerm="SBO:0000247" id="MAM01700l" name="dihydrofolate" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C19H19N7O6">
+      <species metaid="M_MAM01700l" sboTerm="SBO:0000247" id="M_MAM01700l" name="dihydrofolate" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C19H19N7O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01700l">
+            <rdf:Description rdf:about="#M_MAM01700l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dhf"/>
@@ -45762,10 +45798,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01700m" sboTerm="SBO:0000247" id="MAM01700m" name="dihydrofolate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C19H19N7O6">
+      <species metaid="M_MAM01700m" sboTerm="SBO:0000247" id="M_MAM01700m" name="dihydrofolate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C19H19N7O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01700m">
+            <rdf:Description rdf:about="#M_MAM01700m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dhf"/>
@@ -45780,10 +45816,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01700e" sboTerm="SBO:0000247" id="MAM01700e" name="dihydrofolate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C19H19N7O6">
+      <species metaid="M_MAM01700e" sboTerm="SBO:0000247" id="M_MAM01700e" name="dihydrofolate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C19H19N7O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01700e">
+            <rdf:Description rdf:about="#M_MAM01700e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dhf"/>
@@ -45798,10 +45834,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01701c" sboTerm="SBO:0000247" id="MAM01701c" name="dihydrolipoamide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H17NOS2">
+      <species metaid="M_MAM01701c" sboTerm="SBO:0000247" id="M_MAM01701c" name="dihydrolipoamide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H17NOS2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01701c">
+            <rdf:Description rdf:about="#M_MAM01701c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dhlam"/>
@@ -45817,10 +45853,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01701m" sboTerm="SBO:0000247" id="MAM01701m" name="dihydrolipoamide" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H17NOS2">
+      <species metaid="M_MAM01701m" sboTerm="SBO:0000247" id="M_MAM01701m" name="dihydrolipoamide" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H17NOS2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01701m">
+            <rdf:Description rdf:about="#M_MAM01701m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dhlam"/>
@@ -45836,10 +45872,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01702c" sboTerm="SBO:0000247" id="MAM01702c" name="dihydrolipoate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C8H15O2S2">
+      <species metaid="M_MAM01702c" sboTerm="SBO:0000247" id="M_MAM01702c" name="dihydrolipoate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C8H15O2S2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01702c">
+            <rdf:Description rdf:about="#M_MAM01702c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:18047"/>
@@ -45855,10 +45891,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01703m" sboTerm="SBO:0000247" id="MAM01703m" name="dihydrolipoylprotein" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="H2S2X">
+      <species metaid="M_MAM01703m" sboTerm="SBO:0000247" id="M_MAM01703m" name="dihydrolipoylprotein" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="H2S2X">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01703m">
+            <rdf:Description rdf:about="#M_MAM01703m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dhlpro"/>
@@ -45872,10 +45908,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01704c" sboTerm="SBO:0000247" id="MAM01704c" name="dihydroneopterin" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H13N5O4">
+      <species metaid="M_MAM01704c" sboTerm="SBO:0000247" id="M_MAM01704c" name="dihydroneopterin" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H13N5O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01704c">
+            <rdf:Description rdf:about="#M_MAM01704c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:17001"/>
@@ -45889,10 +45925,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01704e" sboTerm="SBO:0000247" id="MAM01704e" name="dihydroneopterin" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H13N5O4">
+      <species metaid="M_MAM01704e" sboTerm="SBO:0000247" id="M_MAM01704e" name="dihydroneopterin" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H13N5O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01704e">
+            <rdf:Description rdf:about="#M_MAM01704e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:17001"/>
@@ -45906,10 +45942,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01705c" sboTerm="SBO:0000247" id="MAM01705c" name="dihydrothymine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H8N2O2">
+      <species metaid="M_MAM01705c" sboTerm="SBO:0000247" id="M_MAM01705c" name="dihydrothymine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H8N2O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01705c">
+            <rdf:Description rdf:about="#M_MAM01705c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/56dthm"/>
@@ -45926,10 +45962,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01705m" sboTerm="SBO:0000247" id="MAM01705m" name="dihydrothymine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H8N2O2">
+      <species metaid="M_MAM01705m" sboTerm="SBO:0000247" id="M_MAM01705m" name="dihydrothymine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H8N2O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01705m">
+            <rdf:Description rdf:about="#M_MAM01705m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/56dthm"/>
@@ -45946,10 +45982,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01706c" sboTerm="SBO:0000247" id="MAM01706c" name="dimethylallyl-PP" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C5H9O7P2">
+      <species metaid="M_MAM01706c" sboTerm="SBO:0000247" id="M_MAM01706c" name="dimethylallyl-PP" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C5H9O7P2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01706c">
+            <rdf:Description rdf:about="#M_MAM01706c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dmpp"/>
@@ -45966,10 +46002,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01707c" sboTerm="SBO:0000247" id="MAM01707c" name="dimethylamine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C2H8N">
+      <species metaid="M_MAM01707c" sboTerm="SBO:0000247" id="M_MAM01707c" name="dimethylamine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C2H8N">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01707c">
+            <rdf:Description rdf:about="#M_MAM01707c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:17170"/>
@@ -45982,10 +46018,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01708c" sboTerm="SBO:0000247" id="MAM01708c" name="dimethylglycine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H9NO2">
+      <species metaid="M_MAM01708c" sboTerm="SBO:0000247" id="M_MAM01708c" name="dimethylglycine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H9NO2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01708c">
+            <rdf:Description rdf:about="#M_MAM01708c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dmgly"/>
@@ -46002,10 +46038,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01708m" sboTerm="SBO:0000247" id="MAM01708m" name="dimethylglycine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H9NO2">
+      <species metaid="M_MAM01708m" sboTerm="SBO:0000247" id="M_MAM01708m" name="dimethylglycine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H9NO2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01708m">
+            <rdf:Description rdf:about="#M_MAM01708m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dmgly"/>
@@ -46022,10 +46058,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01709c" sboTerm="SBO:0000247" id="MAM01709c" name="dIMP" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C10H11N4O7P">
+      <species metaid="M_MAM01709c" sboTerm="SBO:0000247" id="M_MAM01709c" name="dIMP" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C10H11N4O7P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01709c">
+            <rdf:Description rdf:about="#M_MAM01709c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dimp"/>
@@ -46040,10 +46076,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01710c" sboTerm="SBO:0000247" id="MAM01710c" name="diphospho-myo-inositol-polyphosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="O3PX">
+      <species metaid="M_MAM01710c" sboTerm="SBO:0000247" id="M_MAM01710c" name="diphospho-myo-inositol-polyphosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="O3PX">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01710c">
+            <rdf:Description rdf:about="#M_MAM01710c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C11524"/>
@@ -46055,10 +46091,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01711c" sboTerm="SBO:0000247" id="MAM01711c" name="disialylgalactosylgloboside" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C72H121N4O43RCO">
+      <species metaid="M_MAM01711c" sboTerm="SBO:0000247" id="M_MAM01711c" name="disialylgalactosylgloboside" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C72H121N4O43RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01711c">
+            <rdf:Description rdf:about="#M_MAM01711c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/acnacngalgbside_hs"/>
@@ -46070,10 +46106,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01711g" sboTerm="SBO:0000247" id="MAM01711g" name="disialylgalactosylgloboside" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C72H121N4O43RCO">
+      <species metaid="M_MAM01711g" sboTerm="SBO:0000247" id="M_MAM01711g" name="disialylgalactosylgloboside" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C72H121N4O43RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01711g">
+            <rdf:Description rdf:about="#M_MAM01711g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/acnacngalgbside_hs"/>
@@ -46085,10 +46121,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01711e" sboTerm="SBO:0000247" id="MAM01711e" name="disialylgalactosylgloboside" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C72H121N4O43RCO">
+      <species metaid="M_MAM01711e" sboTerm="SBO:0000247" id="M_MAM01711e" name="disialylgalactosylgloboside" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C72H121N4O43RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01711e">
+            <rdf:Description rdf:about="#M_MAM01711e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/acnacngalgbside_hs"/>
@@ -46100,10 +46136,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01712c" sboTerm="SBO:0000247" id="MAM01712c" name="disialyl-T antigen" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C36H56N3O26X">
+      <species metaid="M_MAM01712c" sboTerm="SBO:0000247" id="M_MAM01712c" name="disialyl-T antigen" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C36H56N3O26X">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01712c">
+            <rdf:Description rdf:about="#M_MAM01712c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dsT_antigen"/>
@@ -46116,10 +46152,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01712g" sboTerm="SBO:0000247" id="MAM01712g" name="disialyl-T antigen" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C36H56N3O26X">
+      <species metaid="M_MAM01712g" sboTerm="SBO:0000247" id="M_MAM01712g" name="disialyl-T antigen" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C36H56N3O26X">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01712g">
+            <rdf:Description rdf:about="#M_MAM01712g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dsT_antigen"/>
@@ -46132,10 +46168,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01712e" sboTerm="SBO:0000247" id="MAM01712e" name="disialyl-T antigen" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C36H56N3O26X">
+      <species metaid="M_MAM01712e" sboTerm="SBO:0000247" id="M_MAM01712e" name="disialyl-T antigen" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C36H56N3O26X">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01712e">
+            <rdf:Description rdf:about="#M_MAM01712e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dsT_antigen"/>
@@ -46148,10 +46184,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01713c" sboTerm="SBO:0000247" id="MAM01713c" name="dithiothreitol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H10O2S2">
+      <species metaid="M_MAM01713c" sboTerm="SBO:0000247" id="M_MAM01713c" name="dithiothreitol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H10O2S2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01713c">
+            <rdf:Description rdf:about="#M_MAM01713c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dtt"/>
@@ -46166,10 +46202,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01714c" sboTerm="SBO:0000247" id="MAM01714c" name="dITP" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C10H11N4O13P3">
+      <species metaid="M_MAM01714c" sboTerm="SBO:0000247" id="M_MAM01714c" name="dITP" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C10H11N4O13P3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01714c">
+            <rdf:Description rdf:about="#M_MAM01714c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ditp"/>
@@ -46184,10 +46220,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01714m" sboTerm="SBO:0000247" id="MAM01714m" name="dITP" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C10H11N4O13P3">
+      <species metaid="M_MAM01714m" sboTerm="SBO:0000247" id="M_MAM01714m" name="dITP" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C10H11N4O13P3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01714m">
+            <rdf:Description rdf:about="#M_MAM01714m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ditp"/>
@@ -46202,10 +46238,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01714n" sboTerm="SBO:0000247" id="MAM01714n" name="dITP" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C10H11N4O13P3">
+      <species metaid="M_MAM01714n" sboTerm="SBO:0000247" id="M_MAM01714n" name="dITP" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C10H11N4O13P3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01714n">
+            <rdf:Description rdf:about="#M_MAM01714n">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ditp"/>
@@ -46220,10 +46256,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01714e" sboTerm="SBO:0000247" id="MAM01714e" name="dITP" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C10H11N4O13P3">
+      <species metaid="M_MAM01714e" sboTerm="SBO:0000247" id="M_MAM01714e" name="dITP" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C10H11N4O13P3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01714e">
+            <rdf:Description rdf:about="#M_MAM01714e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ditp"/>
@@ -46238,10 +46274,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01715c" sboTerm="SBO:0000247" id="MAM01715c" name="D-lactaldehyde" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H6O2">
+      <species metaid="M_MAM01715c" sboTerm="SBO:0000247" id="M_MAM01715c" name="D-lactaldehyde" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H6O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01715c">
+            <rdf:Description rdf:about="#M_MAM01715c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/lald__D"/>
@@ -46257,10 +46293,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01716c" sboTerm="SBO:0000247" id="MAM01716c" name="D-lactate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C3H5O3">
+      <species metaid="M_MAM01716c" sboTerm="SBO:0000247" id="M_MAM01716c" name="D-lactate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C3H5O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01716c">
+            <rdf:Description rdf:about="#M_MAM01716c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/lac__D"/>
@@ -46275,10 +46311,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01716m" sboTerm="SBO:0000247" id="MAM01716m" name="D-lactate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C3H5O3">
+      <species metaid="M_MAM01716m" sboTerm="SBO:0000247" id="M_MAM01716m" name="D-lactate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C3H5O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01716m">
+            <rdf:Description rdf:about="#M_MAM01716m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/lac__D"/>
@@ -46293,10 +46329,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01716e" sboTerm="SBO:0000247" id="MAM01716e" name="D-lactate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C3H5O3">
+      <species metaid="M_MAM01716e" sboTerm="SBO:0000247" id="M_MAM01716e" name="D-lactate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C3H5O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01716e">
+            <rdf:Description rdf:about="#M_MAM01716e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/lac__D"/>
@@ -46311,10 +46347,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01717c" sboTerm="SBO:0000247" id="MAM01717c" name="D-mannose-1,6-bisphosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C6H10O12P2">
+      <species metaid="M_MAM01717c" sboTerm="SBO:0000247" id="M_MAM01717c" name="D-mannose-1,6-bisphosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C6H10O12P2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01717c">
+            <rdf:Description rdf:about="#M_MAM01717c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C03693"/>
@@ -46327,10 +46363,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01718c" sboTerm="SBO:0000247" id="MAM01718c" name="D-myo-inositol-1,4,5-trisphosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-6" fbc:chemicalFormula="C6H9O15P3">
+      <species metaid="M_MAM01718c" sboTerm="SBO:0000247" id="M_MAM01718c" name="D-myo-inositol-1,4,5-trisphosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-6" fbc:chemicalFormula="C6H9O15P3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01718c">
+            <rdf:Description rdf:about="#M_MAM01718c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/mi145p"/>
@@ -46346,10 +46382,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01718n" sboTerm="SBO:0000247" id="MAM01718n" name="D-myo-inositol-1,4,5-trisphosphate" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-6" fbc:chemicalFormula="C6H9O15P3">
+      <species metaid="M_MAM01718n" sboTerm="SBO:0000247" id="M_MAM01718n" name="D-myo-inositol-1,4,5-trisphosphate" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-6" fbc:chemicalFormula="C6H9O15P3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01718n">
+            <rdf:Description rdf:about="#M_MAM01718n">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/mi145p"/>
@@ -46365,10 +46401,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01719c" sboTerm="SBO:0000247" id="MAM01719c" name="DNA containing 6-O-methylguanine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C21H28N5O17P3R2">
+      <species metaid="M_MAM01719c" sboTerm="SBO:0000247" id="M_MAM01719c" name="DNA containing 6-O-methylguanine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C21H28N5O17P3R2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01719c">
+            <rdf:Description rdf:about="#M_MAM01719c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C04250"/>
@@ -46380,10 +46416,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01720c" sboTerm="SBO:0000247" id="MAM01720c" name="DNA containing guanine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C20H26N5O17P3R2">
+      <species metaid="M_MAM01720c" sboTerm="SBO:0000247" id="M_MAM01720c" name="DNA containing guanine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C20H26N5O17P3R2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01720c">
+            <rdf:Description rdf:about="#M_MAM01720c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C11475"/>
@@ -46395,10 +46431,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01721c" sboTerm="SBO:0000247" id="MAM01721c" name="DNA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H17O8PR2">
+      <species metaid="M_MAM01721c" sboTerm="SBO:0000247" id="M_MAM01721c" name="DNA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H17O8PR2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01721c">
+            <rdf:Description rdf:about="#M_MAM01721c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dna"/>
@@ -46412,10 +46448,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01721n" sboTerm="SBO:0000247" id="MAM01721n" name="DNA" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H17O8PR2">
+      <species metaid="M_MAM01721n" sboTerm="SBO:0000247" id="M_MAM01721n" name="DNA" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H17O8PR2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01721n">
+            <rdf:Description rdf:about="#M_MAM01721n">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dna"/>
@@ -46429,10 +46465,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01722c" sboTerm="SBO:0000247" id="MAM01722c" name="DNA-5-methylcytosine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C11H19O8PR2">
+      <species metaid="M_MAM01722c" sboTerm="SBO:0000247" id="M_MAM01722c" name="DNA-5-methylcytosine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C11H19O8PR2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01722c">
+            <rdf:Description rdf:about="#M_MAM01722c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dna5mtc"/>
@@ -46445,10 +46481,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01722n" sboTerm="SBO:0000247" id="MAM01722n" name="DNA-5-methylcytosine" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C11H19O8PR2">
+      <species metaid="M_MAM01722n" sboTerm="SBO:0000247" id="M_MAM01722n" name="DNA-5-methylcytosine" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C11H19O8PR2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01722n">
+            <rdf:Description rdf:about="#M_MAM01722n">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dna5mtc"/>
@@ -46461,10 +46497,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01723c" sboTerm="SBO:0000247" id="MAM01723c" name="docosahexaenoylcarnitine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C29H45NO4">
+      <species metaid="M_MAM01723c" sboTerm="SBO:0000247" id="M_MAM01723c" name="docosahexaenoylcarnitine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C29H45NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01723c">
+            <rdf:Description rdf:about="#M_MAM01723c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/c226crn"/>
@@ -46476,10 +46512,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01723m" sboTerm="SBO:0000247" id="MAM01723m" name="docosahexaenoylcarnitine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C29H45NO4">
+      <species metaid="M_MAM01723m" sboTerm="SBO:0000247" id="M_MAM01723m" name="docosahexaenoylcarnitine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C29H45NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01723m">
+            <rdf:Description rdf:about="#M_MAM01723m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/c226crn"/>
@@ -46491,10 +46527,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01723r" sboTerm="SBO:0000247" id="MAM01723r" name="docosahexaenoylcarnitine" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C29H45NO4">
+      <species metaid="M_MAM01723r" sboTerm="SBO:0000247" id="M_MAM01723r" name="docosahexaenoylcarnitine" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C29H45NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01723r">
+            <rdf:Description rdf:about="#M_MAM01723r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/c226crn"/>
@@ -46506,10 +46542,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01724c" sboTerm="SBO:0000247" id="MAM01724c" name="docosanoylcarnitine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C29H57NO4">
+      <species metaid="M_MAM01724c" sboTerm="SBO:0000247" id="M_MAM01724c" name="docosanoylcarnitine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C29H57NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01724c">
+            <rdf:Description rdf:about="#M_MAM01724c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM158874"/>
@@ -46520,10 +46556,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01724m" sboTerm="SBO:0000247" id="MAM01724m" name="docosanoylcarnitine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C29H57NO4">
+      <species metaid="M_MAM01724m" sboTerm="SBO:0000247" id="M_MAM01724m" name="docosanoylcarnitine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C29H57NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01724m">
+            <rdf:Description rdf:about="#M_MAM01724m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM158874"/>
@@ -46534,10 +46570,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01724r" sboTerm="SBO:0000247" id="MAM01724r" name="docosanoylcarnitine" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C29H57NO4">
+      <species metaid="M_MAM01724r" sboTerm="SBO:0000247" id="M_MAM01724r" name="docosanoylcarnitine" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C29H57NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01724r">
+            <rdf:Description rdf:about="#M_MAM01724r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM158874"/>
@@ -46548,10 +46584,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01725c" sboTerm="SBO:0000247" id="MAM01725c" name="docosanoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C43H74N7O17P3S">
+      <species metaid="M_MAM01725c" sboTerm="SBO:0000247" id="M_MAM01725c" name="docosanoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C43H74N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01725c">
+            <rdf:Description rdf:about="#M_MAM01725c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:65088"/>
@@ -46566,10 +46602,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01725m" sboTerm="SBO:0000247" id="MAM01725m" name="docosanoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C43H74N7O17P3S">
+      <species metaid="M_MAM01725m" sboTerm="SBO:0000247" id="M_MAM01725m" name="docosanoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C43H74N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01725m">
+            <rdf:Description rdf:about="#M_MAM01725m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:65088"/>
@@ -46584,10 +46620,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM01725x" sboTerm="SBO:0000247" id="MAM01725x" name="docosanoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C43H74N7O17P3S">
+      <species metaid="M_MAM01725x" sboTerm="SBO:0000247" id="M_MAM01725x" name="docosanoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C43H74N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01725x">
+            <rdf:Description rdf:about="#M_MAM01725x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:65088"/>
@@ -46602,10 +46638,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01725r" sboTerm="SBO:0000247" id="MAM01725r" name="docosanoyl-CoA" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C43H74N7O17P3S">
+      <species metaid="M_MAM01725r" sboTerm="SBO:0000247" id="M_MAM01725r" name="docosanoyl-CoA" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C43H74N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01725r">
+            <rdf:Description rdf:about="#M_MAM01725r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:65088"/>
@@ -46620,10 +46656,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM01726c" sboTerm="SBO:0000247" id="MAM01726c" name="docosenoylcarnitine(11)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C29H55NO4">
+      <species metaid="M_MAM01726c" sboTerm="SBO:0000247" id="M_MAM01726c" name="docosenoylcarnitine(11)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C29H55NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01726c">
+            <rdf:Description rdf:about="#M_MAM01726c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M01726"/>
@@ -46633,10 +46669,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01726m" sboTerm="SBO:0000247" id="MAM01726m" name="docosenoylcarnitine(11)" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C29H55NO4">
+      <species metaid="M_MAM01726m" sboTerm="SBO:0000247" id="M_MAM01726m" name="docosenoylcarnitine(11)" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C29H55NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01726m">
+            <rdf:Description rdf:about="#M_MAM01726m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M01726"/>
@@ -46646,10 +46682,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01726r" sboTerm="SBO:0000247" id="MAM01726r" name="docosenoylcarnitine(11)" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C29H55NO4">
+      <species metaid="M_MAM01726r" sboTerm="SBO:0000247" id="M_MAM01726r" name="docosenoylcarnitine(11)" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C29H55NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01726r">
+            <rdf:Description rdf:about="#M_MAM01726r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M01726"/>
@@ -46659,10 +46695,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01727c" sboTerm="SBO:0000247" id="MAM01727c" name="docosenoylcarnitine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C29H55NO4">
+      <species metaid="M_MAM01727c" sboTerm="SBO:0000247" id="M_MAM01727c" name="docosenoylcarnitine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C29H55NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01727c">
+            <rdf:Description rdf:about="#M_MAM01727c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M01727"/>
@@ -46672,10 +46708,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01727m" sboTerm="SBO:0000247" id="MAM01727m" name="docosenoylcarnitine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C29H55NO4">
+      <species metaid="M_MAM01727m" sboTerm="SBO:0000247" id="M_MAM01727m" name="docosenoylcarnitine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C29H55NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01727m">
+            <rdf:Description rdf:about="#M_MAM01727m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M01727"/>
@@ -46685,10 +46721,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01727r" sboTerm="SBO:0000247" id="MAM01727r" name="docosenoylcarnitine" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C29H55NO4">
+      <species metaid="M_MAM01727r" sboTerm="SBO:0000247" id="M_MAM01727r" name="docosenoylcarnitine" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C29H55NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01727r">
+            <rdf:Description rdf:about="#M_MAM01727r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M01727"/>
@@ -46698,10 +46734,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01728c" sboTerm="SBO:0000247" id="MAM01728c" name="dodecanoyl-[ACP]" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C23H43N2O8PRS">
+      <species metaid="M_MAM01728c" sboTerm="SBO:0000247" id="M_MAM01728c" name="dodecanoyl-[ACP]" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C23H43N2O8PRS">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01728c">
+            <rdf:Description rdf:about="#M_MAM01728c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ddcaACP"/>
@@ -46715,10 +46751,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01729c" sboTerm="SBO:0000247" id="MAM01729c" name="dodecanoylcarnitine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H37NO4">
+      <species metaid="M_MAM01729c" sboTerm="SBO:0000247" id="M_MAM01729c" name="dodecanoylcarnitine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H37NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01729c">
+            <rdf:Description rdf:about="#M_MAM01729c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/hmdb/HMDB02250"/>
@@ -46732,10 +46768,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01729m" sboTerm="SBO:0000247" id="MAM01729m" name="dodecanoylcarnitine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H37NO4">
+      <species metaid="M_MAM01729m" sboTerm="SBO:0000247" id="M_MAM01729m" name="dodecanoylcarnitine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H37NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01729m">
+            <rdf:Description rdf:about="#M_MAM01729m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/hmdb/HMDB02250"/>
@@ -46749,10 +46785,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01729r" sboTerm="SBO:0000247" id="MAM01729r" name="dodecanoylcarnitine" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H37NO4">
+      <species metaid="M_MAM01729r" sboTerm="SBO:0000247" id="M_MAM01729r" name="dodecanoylcarnitine" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H37NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01729r">
+            <rdf:Description rdf:about="#M_MAM01729r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/hmdb/HMDB02250"/>
@@ -46766,10 +46802,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01730c" sboTerm="SBO:0000247" id="MAM01730c" name="dolichol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C100H164O">
+      <species metaid="M_MAM01730c" sboTerm="SBO:0000247" id="M_MAM01730c" name="dolichol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C100H164O">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01730c">
+            <rdf:Description rdf:about="#M_MAM01730c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dolichol__L"/>
@@ -46784,10 +46820,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01730r" sboTerm="SBO:0000247" id="MAM01730r" name="dolichol" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C100H164O">
+      <species metaid="M_MAM01730r" sboTerm="SBO:0000247" id="M_MAM01730r" name="dolichol" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C100H164O">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01730r">
+            <rdf:Description rdf:about="#M_MAM01730r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dolichol__L"/>
@@ -46802,10 +46838,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01730e" sboTerm="SBO:0000247" id="MAM01730e" name="dolichol" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C100H164O">
+      <species metaid="M_MAM01730e" sboTerm="SBO:0000247" id="M_MAM01730e" name="dolichol" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C100H164O">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01730e">
+            <rdf:Description rdf:about="#M_MAM01730e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dolichol__L"/>
@@ -46820,10 +46856,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01731r" sboTerm="SBO:0000247" id="MAM01731r" name="dolichyl-D-glucosyl-phosphate" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C106H174O9P">
+      <species metaid="M_MAM01731r" sboTerm="SBO:0000247" id="M_MAM01731r" name="dolichyl-D-glucosyl-phosphate" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C106H174O9P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01731r">
+            <rdf:Description rdf:about="#M_MAM01731r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dolglcp__L"/>
@@ -46838,10 +46874,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01732r" sboTerm="SBO:0000247" id="MAM01732r" name="dolichyl-diphosphate" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C100H163O7P2">
+      <species metaid="M_MAM01732r" sboTerm="SBO:0000247" id="M_MAM01732r" name="dolichyl-diphosphate" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C100H163O7P2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01732r">
+            <rdf:Description rdf:about="#M_MAM01732r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/doldp__L"/>
@@ -46856,10 +46892,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01733c" sboTerm="SBO:0000247" id="MAM01733c" name="dolichyl-phosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C100H163O4P">
+      <species metaid="M_MAM01733c" sboTerm="SBO:0000247" id="M_MAM01733c" name="dolichyl-phosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C100H163O4P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01733c">
+            <rdf:Description rdf:about="#M_MAM01733c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dolp__L"/>
@@ -46874,10 +46910,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01733r" sboTerm="SBO:0000247" id="MAM01733r" name="dolichyl-phosphate" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C100H163O4P">
+      <species metaid="M_MAM01733r" sboTerm="SBO:0000247" id="M_MAM01733r" name="dolichyl-phosphate" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C100H163O4P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01733r">
+            <rdf:Description rdf:about="#M_MAM01733r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dolp__L"/>
@@ -46892,10 +46928,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01734c" sboTerm="SBO:0000247" id="MAM01734c" name="dolichyl-phosphate-D-mannose" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C106H174O9P">
+      <species metaid="M_MAM01734c" sboTerm="SBO:0000247" id="M_MAM01734c" name="dolichyl-phosphate-D-mannose" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C106H174O9P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01734c">
+            <rdf:Description rdf:about="#M_MAM01734c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dolmanp__L"/>
@@ -46909,10 +46945,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01734r" sboTerm="SBO:0000247" id="MAM01734r" name="dolichyl-phosphate-D-mannose" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C106H174O9P">
+      <species metaid="M_MAM01734r" sboTerm="SBO:0000247" id="M_MAM01734r" name="dolichyl-phosphate-D-mannose" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C106H174O9P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01734r">
+            <rdf:Description rdf:about="#M_MAM01734r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dolmanp__L"/>
@@ -46926,10 +46962,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01736c" sboTerm="SBO:0000247" id="MAM01736c" name="dopamine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C8H12NO2">
+      <species metaid="M_MAM01736c" sboTerm="SBO:0000247" id="M_MAM01736c" name="dopamine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C8H12NO2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01736c">
+            <rdf:Description rdf:about="#M_MAM01736c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dopa"/>
@@ -46945,10 +46981,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01736g" sboTerm="SBO:0000247" id="MAM01736g" name="dopamine" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C8H12NO2">
+      <species metaid="M_MAM01736g" sboTerm="SBO:0000247" id="M_MAM01736g" name="dopamine" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C8H12NO2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01736g">
+            <rdf:Description rdf:about="#M_MAM01736g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dopa"/>
@@ -46964,10 +47000,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01736m" sboTerm="SBO:0000247" id="MAM01736m" name="dopamine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C8H12NO2">
+      <species metaid="M_MAM01736m" sboTerm="SBO:0000247" id="M_MAM01736m" name="dopamine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C8H12NO2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01736m">
+            <rdf:Description rdf:about="#M_MAM01736m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dopa"/>
@@ -46983,10 +47019,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01736e" sboTerm="SBO:0000247" id="MAM01736e" name="dopamine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C8H12NO2">
+      <species metaid="M_MAM01736e" sboTerm="SBO:0000247" id="M_MAM01736e" name="dopamine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C8H12NO2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01736e">
+            <rdf:Description rdf:about="#M_MAM01736e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dopa"/>
@@ -47002,10 +47038,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01737c" sboTerm="SBO:0000247" id="MAM01737c" name="dopamine-3-O-sulfate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H11NO5S">
+      <species metaid="M_MAM01737c" sboTerm="SBO:0000247" id="M_MAM01737c" name="dopamine-3-O-sulfate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H11NO5S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01737c">
+            <rdf:Description rdf:about="#M_MAM01737c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dopasf"/>
@@ -47020,10 +47056,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01737e" sboTerm="SBO:0000247" id="MAM01737e" name="dopamine-3-O-sulfate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H11NO5S">
+      <species metaid="M_MAM01737e" sboTerm="SBO:0000247" id="M_MAM01737e" name="dopamine-3-O-sulfate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H11NO5S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01737e">
+            <rdf:Description rdf:about="#M_MAM01737e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dopasf"/>
@@ -47038,10 +47074,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01738c" sboTerm="SBO:0000247" id="MAM01738c" name="dopamine-O-quinone" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C8H10NO2">
+      <species metaid="M_MAM01738c" sboTerm="SBO:0000247" id="M_MAM01738c" name="dopamine-O-quinone" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C8H10NO2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01738c">
+            <rdf:Description rdf:about="#M_MAM01738c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM5727"/>
@@ -47053,10 +47089,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01739c" sboTerm="SBO:0000247" id="MAM01739c" name="dopaminochrome" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H7NO2">
+      <species metaid="M_MAM01739c" sboTerm="SBO:0000247" id="M_MAM01739c" name="dopaminochrome" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H7NO2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01739c">
+            <rdf:Description rdf:about="#M_MAM01739c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:27404"/>
@@ -47072,10 +47108,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01740c" sboTerm="SBO:0000247" id="MAM01740c" name="D-ornithine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C5H13N2O2">
+      <species metaid="M_MAM01740c" sboTerm="SBO:0000247" id="M_MAM01740c" name="D-ornithine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C5H13N2O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01740c">
+            <rdf:Description rdf:about="#M_MAM01740c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/orn__D"/>
@@ -47091,10 +47127,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01740x" sboTerm="SBO:0000247" id="MAM01740x" name="D-ornithine" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C5H13N2O2">
+      <species metaid="M_MAM01740x" sboTerm="SBO:0000247" id="M_MAM01740x" name="D-ornithine" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C5H13N2O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01740x">
+            <rdf:Description rdf:about="#M_MAM01740x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/orn__D"/>
@@ -47110,10 +47146,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01740e" sboTerm="SBO:0000247" id="MAM01740e" name="D-ornithine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C5H13N2O2">
+      <species metaid="M_MAM01740e" sboTerm="SBO:0000247" id="M_MAM01740e" name="D-ornithine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C5H13N2O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01740e">
+            <rdf:Description rdf:about="#M_MAM01740e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/orn__D"/>
@@ -47129,10 +47165,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01741c" sboTerm="SBO:0000247" id="MAM01741c" name="DPA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C22H33O2">
+      <species metaid="M_MAM01741c" sboTerm="SBO:0000247" id="M_MAM01741c" name="DPA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C22H33O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01741c">
+            <rdf:Description rdf:about="#M_MAM01741c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/clpnd"/>
@@ -47150,10 +47186,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01741l" sboTerm="SBO:0000247" id="MAM01741l" name="DPA" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C22H33O2">
+      <species metaid="M_MAM01741l" sboTerm="SBO:0000247" id="M_MAM01741l" name="DPA" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C22H33O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01741l">
+            <rdf:Description rdf:about="#M_MAM01741l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/clpnd"/>
@@ -47171,10 +47207,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01741r" sboTerm="SBO:0000247" id="MAM01741r" name="DPA" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C22H33O2">
+      <species metaid="M_MAM01741r" sboTerm="SBO:0000247" id="M_MAM01741r" name="DPA" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C22H33O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01741r">
+            <rdf:Description rdf:about="#M_MAM01741r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/clpnd"/>
@@ -47192,10 +47228,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01741e" sboTerm="SBO:0000247" id="MAM01741e" name="DPA" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C22H33O2">
+      <species metaid="M_MAM01741e" sboTerm="SBO:0000247" id="M_MAM01741e" name="DPA" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C22H33O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01741e">
+            <rdf:Description rdf:about="#M_MAM01741e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/clpnd"/>
@@ -47213,10 +47249,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01742c" sboTerm="SBO:0000247" id="MAM01742c" name="D-proline" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H9NO2">
+      <species metaid="M_MAM01742c" sboTerm="SBO:0000247" id="M_MAM01742c" name="D-proline" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H9NO2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01742c">
+            <rdf:Description rdf:about="#M_MAM01742c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pro__D"/>
@@ -47233,10 +47269,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01742l" sboTerm="SBO:0000247" id="MAM01742l" name="D-proline" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H9NO2">
+      <species metaid="M_MAM01742l" sboTerm="SBO:0000247" id="M_MAM01742l" name="D-proline" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H9NO2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01742l">
+            <rdf:Description rdf:about="#M_MAM01742l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pro__D"/>
@@ -47253,10 +47289,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01742e" sboTerm="SBO:0000247" id="MAM01742e" name="D-proline" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H9NO2">
+      <species metaid="M_MAM01742e" sboTerm="SBO:0000247" id="M_MAM01742e" name="D-proline" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H9NO2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01742e">
+            <rdf:Description rdf:about="#M_MAM01742e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pro__D"/>
@@ -47273,10 +47309,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01743c" sboTerm="SBO:0000247" id="MAM01743c" name="D-ribulose" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H10O5">
+      <species metaid="M_MAM01743c" sboTerm="SBO:0000247" id="M_MAM01743c" name="D-ribulose" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H10O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01743c">
+            <rdf:Description rdf:about="#M_MAM01743c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/rbl__D"/>
@@ -47292,10 +47328,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01743e" sboTerm="SBO:0000247" id="MAM01743e" name="D-ribulose" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H10O5">
+      <species metaid="M_MAM01743e" sboTerm="SBO:0000247" id="M_MAM01743e" name="D-ribulose" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H10O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01743e">
+            <rdf:Description rdf:about="#M_MAM01743e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/rbl__D"/>
@@ -47311,10 +47347,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01744c" sboTerm="SBO:0000247" id="MAM01744c" name="D-serine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H7NO3">
+      <species metaid="M_MAM01744c" sboTerm="SBO:0000247" id="M_MAM01744c" name="D-serine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H7NO3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01744c">
+            <rdf:Description rdf:about="#M_MAM01744c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ser__D"/>
@@ -47330,10 +47366,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01744e" sboTerm="SBO:0000247" id="MAM01744e" name="D-serine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H7NO3">
+      <species metaid="M_MAM01744e" sboTerm="SBO:0000247" id="M_MAM01744e" name="D-serine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H7NO3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01744e">
+            <rdf:Description rdf:about="#M_MAM01744e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ser__D"/>
@@ -47349,10 +47385,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01745c" sboTerm="SBO:0000247" id="MAM01745c" name="D-tagatose" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H12O6">
+      <species metaid="M_MAM01745c" sboTerm="SBO:0000247" id="M_MAM01745c" name="D-tagatose" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H12O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01745c">
+            <rdf:Description rdf:about="#M_MAM01745c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/tag__D"/>
@@ -47368,10 +47404,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01745e" sboTerm="SBO:0000247" id="MAM01745e" name="D-tagatose" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H12O6">
+      <species metaid="M_MAM01745e" sboTerm="SBO:0000247" id="M_MAM01745e" name="D-tagatose" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H12O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01745e">
+            <rdf:Description rdf:about="#M_MAM01745e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/tag__D"/>
@@ -47387,10 +47423,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01746c" sboTerm="SBO:0000247" id="MAM01746c" name="D-tagatose-6-phosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H11O9P">
+      <species metaid="M_MAM01746c" sboTerm="SBO:0000247" id="M_MAM01746c" name="D-tagatose-6-phosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H11O9P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01746c">
+            <rdf:Description rdf:about="#M_MAM01746c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/tag1p__D"/>
@@ -47406,10 +47442,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01747c" sboTerm="SBO:0000247" id="MAM01747c" name="dTDP" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C10H13N2O11P2">
+      <species metaid="M_MAM01747c" sboTerm="SBO:0000247" id="M_MAM01747c" name="dTDP" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C10H13N2O11P2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01747c">
+            <rdf:Description rdf:about="#M_MAM01747c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dtdp"/>
@@ -47425,10 +47461,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01747m" sboTerm="SBO:0000247" id="MAM01747m" name="dTDP" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C10H13N2O11P2">
+      <species metaid="M_MAM01747m" sboTerm="SBO:0000247" id="M_MAM01747m" name="dTDP" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C10H13N2O11P2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01747m">
+            <rdf:Description rdf:about="#M_MAM01747m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dtdp"/>
@@ -47444,10 +47480,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01747n" sboTerm="SBO:0000247" id="MAM01747n" name="dTDP" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C10H13N2O11P2">
+      <species metaid="M_MAM01747n" sboTerm="SBO:0000247" id="M_MAM01747n" name="dTDP" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C10H13N2O11P2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01747n">
+            <rdf:Description rdf:about="#M_MAM01747n">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dtdp"/>
@@ -47463,10 +47499,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01748c" sboTerm="SBO:0000247" id="MAM01748c" name="dTDP-4-dehydro-6-deoxy-L-mannose" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C16H22N2O15P2">
+      <species metaid="M_MAM01748c" sboTerm="SBO:0000247" id="M_MAM01748c" name="dTDP-4-dehydro-6-deoxy-L-mannose" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C16H22N2O15P2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01748c">
+            <rdf:Description rdf:about="#M_MAM01748c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dtdp4d6dm"/>
@@ -47481,10 +47517,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01749c" sboTerm="SBO:0000247" id="MAM01749c" name="dTDP-6-deoxy-L-mannose" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C16H24N2O15P2">
+      <species metaid="M_MAM01749c" sboTerm="SBO:0000247" id="M_MAM01749c" name="dTDP-6-deoxy-L-mannose" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C16H24N2O15P2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01749c">
+            <rdf:Description rdf:about="#M_MAM01749c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dtdprmn"/>
@@ -47500,10 +47536,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01750c" sboTerm="SBO:0000247" id="MAM01750c" name="dTDP-galactose" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C16H24N2O16P2">
+      <species metaid="M_MAM01750c" sboTerm="SBO:0000247" id="M_MAM01750c" name="dTDP-galactose" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C16H24N2O16P2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01750c">
+            <rdf:Description rdf:about="#M_MAM01750c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:14086"/>
@@ -47516,10 +47552,10 @@
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       </species>
-      <species metaid="MAM01751c" sboTerm="SBO:0000247" id="MAM01751c" name="dTDP-glucose" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C16H24N2O16P2">
+      <species metaid="M_MAM01751c" sboTerm="SBO:0000247" id="M_MAM01751c" name="dTDP-glucose" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C16H24N2O16P2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01751c">
+            <rdf:Description rdf:about="#M_MAM01751c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dtdpglu"/>
@@ -47534,10 +47570,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01752c" sboTerm="SBO:0000247" id="MAM01752c" name="dTMP" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C10H13N2O8P">
+      <species metaid="M_MAM01752c" sboTerm="SBO:0000247" id="M_MAM01752c" name="dTMP" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C10H13N2O8P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01752c">
+            <rdf:Description rdf:about="#M_MAM01752c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dtmp"/>
@@ -47553,10 +47589,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01752l" sboTerm="SBO:0000247" id="MAM01752l" name="dTMP" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C10H13N2O8P">
+      <species metaid="M_MAM01752l" sboTerm="SBO:0000247" id="M_MAM01752l" name="dTMP" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C10H13N2O8P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01752l">
+            <rdf:Description rdf:about="#M_MAM01752l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dtmp"/>
@@ -47572,10 +47608,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01752m" sboTerm="SBO:0000247" id="MAM01752m" name="dTMP" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C10H13N2O8P">
+      <species metaid="M_MAM01752m" sboTerm="SBO:0000247" id="M_MAM01752m" name="dTMP" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C10H13N2O8P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01752m">
+            <rdf:Description rdf:about="#M_MAM01752m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dtmp"/>
@@ -47591,10 +47627,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01752n" sboTerm="SBO:0000247" id="MAM01752n" name="dTMP" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C10H13N2O8P">
+      <species metaid="M_MAM01752n" sboTerm="SBO:0000247" id="M_MAM01752n" name="dTMP" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C10H13N2O8P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01752n">
+            <rdf:Description rdf:about="#M_MAM01752n">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dtmp"/>
@@ -47610,10 +47646,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM01753c" sboTerm="SBO:0000247" id="MAM01753c" name="dTTP" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C10H13N2O14P3">
+      <species metaid="M_MAM01753c" sboTerm="SBO:0000247" id="M_MAM01753c" name="dTTP" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C10H13N2O14P3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01753c">
+            <rdf:Description rdf:about="#M_MAM01753c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dttp"/>
@@ -47629,10 +47665,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01753m" sboTerm="SBO:0000247" id="MAM01753m" name="dTTP" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C10H13N2O14P3">
+      <species metaid="M_MAM01753m" sboTerm="SBO:0000247" id="M_MAM01753m" name="dTTP" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C10H13N2O14P3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01753m">
+            <rdf:Description rdf:about="#M_MAM01753m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dttp"/>
@@ -47648,10 +47684,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01753n" sboTerm="SBO:0000247" id="MAM01753n" name="dTTP" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C10H13N2O14P3">
+      <species metaid="M_MAM01753n" sboTerm="SBO:0000247" id="M_MAM01753n" name="dTTP" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C10H13N2O14P3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01753n">
+            <rdf:Description rdf:about="#M_MAM01753n">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dttp"/>
@@ -47667,10 +47703,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01754c" sboTerm="SBO:0000247" id="MAM01754c" name="dUDP" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C9H11N2O11P2">
+      <species metaid="M_MAM01754c" sboTerm="SBO:0000247" id="M_MAM01754c" name="dUDP" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C9H11N2O11P2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01754c">
+            <rdf:Description rdf:about="#M_MAM01754c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dudp"/>
@@ -47685,10 +47721,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01754m" sboTerm="SBO:0000247" id="MAM01754m" name="dUDP" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C9H11N2O11P2">
+      <species metaid="M_MAM01754m" sboTerm="SBO:0000247" id="M_MAM01754m" name="dUDP" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C9H11N2O11P2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01754m">
+            <rdf:Description rdf:about="#M_MAM01754m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dudp"/>
@@ -47703,10 +47739,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01754n" sboTerm="SBO:0000247" id="MAM01754n" name="dUDP" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C9H11N2O11P2">
+      <species metaid="M_MAM01754n" sboTerm="SBO:0000247" id="M_MAM01754n" name="dUDP" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C9H11N2O11P2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01754n">
+            <rdf:Description rdf:about="#M_MAM01754n">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dudp"/>
@@ -47721,10 +47757,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01755c" sboTerm="SBO:0000247" id="MAM01755c" name="dUMP" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C9H11N2O8P">
+      <species metaid="M_MAM01755c" sboTerm="SBO:0000247" id="M_MAM01755c" name="dUMP" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C9H11N2O8P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01755c">
+            <rdf:Description rdf:about="#M_MAM01755c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dump"/>
@@ -47740,10 +47776,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01755m" sboTerm="SBO:0000247" id="MAM01755m" name="dUMP" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C9H11N2O8P">
+      <species metaid="M_MAM01755m" sboTerm="SBO:0000247" id="M_MAM01755m" name="dUMP" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C9H11N2O8P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01755m">
+            <rdf:Description rdf:about="#M_MAM01755m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dump"/>
@@ -47759,10 +47795,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01755n" sboTerm="SBO:0000247" id="MAM01755n" name="dUMP" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C9H11N2O8P">
+      <species metaid="M_MAM01755n" sboTerm="SBO:0000247" id="M_MAM01755n" name="dUMP" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C9H11N2O8P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01755n">
+            <rdf:Description rdf:about="#M_MAM01755n">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dump"/>
@@ -47778,10 +47814,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01756c" sboTerm="SBO:0000247" id="MAM01756c" name="dUTP" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C9H11N2O14P3">
+      <species metaid="M_MAM01756c" sboTerm="SBO:0000247" id="M_MAM01756c" name="dUTP" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C9H11N2O14P3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01756c">
+            <rdf:Description rdf:about="#M_MAM01756c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dutp"/>
@@ -47797,10 +47833,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01756m" sboTerm="SBO:0000247" id="MAM01756m" name="dUTP" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C9H11N2O14P3">
+      <species metaid="M_MAM01756m" sboTerm="SBO:0000247" id="M_MAM01756m" name="dUTP" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C9H11N2O14P3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01756m">
+            <rdf:Description rdf:about="#M_MAM01756m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dutp"/>
@@ -47816,10 +47852,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01756n" sboTerm="SBO:0000247" id="MAM01756n" name="dUTP" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C9H11N2O14P3">
+      <species metaid="M_MAM01756n" sboTerm="SBO:0000247" id="M_MAM01756n" name="dUTP" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C9H11N2O14P3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01756n">
+            <rdf:Description rdf:about="#M_MAM01756n">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dutp"/>
@@ -47835,10 +47871,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01757c" sboTerm="SBO:0000247" id="MAM01757c" name="D-xylonolactone" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H8O5">
+      <species metaid="M_MAM01757c" sboTerm="SBO:0000247" id="M_MAM01757c" name="D-xylonolactone" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H8O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01757c">
+            <rdf:Description rdf:about="#M_MAM01757c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:15867"/>
@@ -47851,10 +47887,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01758c" sboTerm="SBO:0000247" id="MAM01758c" name="D-xylose" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H10O5">
+      <species metaid="M_MAM01758c" sboTerm="SBO:0000247" id="M_MAM01758c" name="D-xylose" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H10O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01758c">
+            <rdf:Description rdf:about="#M_MAM01758c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/xyl__D"/>
@@ -47869,10 +47905,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01758l" sboTerm="SBO:0000247" id="MAM01758l" name="D-xylose" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H10O5">
+      <species metaid="M_MAM01758l" sboTerm="SBO:0000247" id="M_MAM01758l" name="D-xylose" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H10O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01758l">
+            <rdf:Description rdf:about="#M_MAM01758l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/xyl__D"/>
@@ -47887,10 +47923,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01758e" sboTerm="SBO:0000247" id="MAM01758e" name="D-xylose" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H10O5">
+      <species metaid="M_MAM01758e" sboTerm="SBO:0000247" id="M_MAM01758e" name="D-xylose" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H10O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01758e">
+            <rdf:Description rdf:about="#M_MAM01758e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/xyl__D"/>
@@ -47905,10 +47941,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01759c" sboTerm="SBO:0000247" id="MAM01759c" name="D-xylulose" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H10O5">
+      <species metaid="M_MAM01759c" sboTerm="SBO:0000247" id="M_MAM01759c" name="D-xylulose" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H10O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01759c">
+            <rdf:Description rdf:about="#M_MAM01759c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/xylu__D"/>
@@ -47925,10 +47961,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01760c" sboTerm="SBO:0000247" id="MAM01760c" name="D-xylulose-1-phosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C5H9O8P">
+      <species metaid="M_MAM01760c" sboTerm="SBO:0000247" id="M_MAM01760c" name="D-xylulose-1-phosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C5H9O8P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01760c">
+            <rdf:Description rdf:about="#M_MAM01760c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/xu1p__D"/>
@@ -47942,10 +47978,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01761c" sboTerm="SBO:0000247" id="MAM01761c" name="D-xylulose-5-phosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C5H9O8P">
+      <species metaid="M_MAM01761c" sboTerm="SBO:0000247" id="M_MAM01761c" name="D-xylulose-5-phosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C5H9O8P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01761c">
+            <rdf:Description rdf:about="#M_MAM01761c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/xu5p__D"/>
@@ -47960,10 +47996,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01762c" sboTerm="SBO:0000247" id="MAM01762c" name="dynorphin A-(1-5)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C28H37N5O7">
+      <species metaid="M_MAM01762c" sboTerm="SBO:0000247" id="M_MAM01762c" name="dynorphin A-(1-5)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C28H37N5O7">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01762c">
+            <rdf:Description rdf:about="#M_MAM01762c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM164752"/>
@@ -47974,10 +48010,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01763c" sboTerm="SBO:0000247" id="MAM01763c" name="dynorphin A-(1-8)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="C46H74N14O10">
+      <species metaid="M_MAM01763c" sboTerm="SBO:0000247" id="M_MAM01763c" name="dynorphin A-(1-8)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="C46H74N14O10">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01763c">
+            <rdf:Description rdf:about="#M_MAM01763c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM51736"/>
@@ -47989,10 +48025,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01764c" sboTerm="SBO:0000247" id="MAM01764c" name="dynorphin A-(6-8)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="C18H39N9O4">
+      <species metaid="M_MAM01764c" sboTerm="SBO:0000247" id="M_MAM01764c" name="dynorphin A-(6-8)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="C18H39N9O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01764c">
+            <rdf:Description rdf:about="#M_MAM01764c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM51735"/>
@@ -48004,10 +48040,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01765c" sboTerm="SBO:0000247" id="MAM01765c" name="ebastine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C32H39NO2">
+      <species metaid="M_MAM01765c" sboTerm="SBO:0000247" id="M_MAM01765c" name="ebastine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C32H39NO2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01765c">
+            <rdf:Description rdf:about="#M_MAM01765c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ebastine"/>
@@ -48022,10 +48058,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01765r" sboTerm="SBO:0000247" id="MAM01765r" name="ebastine" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C32H39NO2">
+      <species metaid="M_MAM01765r" sboTerm="SBO:0000247" id="M_MAM01765r" name="ebastine" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C32H39NO2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01765r">
+            <rdf:Description rdf:about="#M_MAM01765r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ebastine"/>
@@ -48040,10 +48076,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01765e" sboTerm="SBO:0000247" id="MAM01765e" name="ebastine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C32H39NO2">
+      <species metaid="M_MAM01765e" sboTerm="SBO:0000247" id="M_MAM01765e" name="ebastine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C32H39NO2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01765e">
+            <rdf:Description rdf:about="#M_MAM01765e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ebastine"/>
@@ -48058,10 +48094,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01766r" sboTerm="SBO:0000247" id="MAM01766r" name="ecgonine" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C9H14NO3">
+      <species metaid="M_MAM01766r" sboTerm="SBO:0000247" id="M_MAM01766r" name="ecgonine" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C9H14NO3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01766r">
+            <rdf:Description rdf:about="#M_MAM01766r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ecgon"/>
@@ -48077,10 +48113,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01767c" sboTerm="SBO:0000247" id="MAM01767c" name="ecgonine-methyl ester" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H17NO3">
+      <species metaid="M_MAM01767c" sboTerm="SBO:0000247" id="M_MAM01767c" name="ecgonine-methyl ester" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H17NO3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01767c">
+            <rdf:Description rdf:about="#M_MAM01767c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/egme"/>
@@ -48095,10 +48131,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01767r" sboTerm="SBO:0000247" id="MAM01767r" name="ecgonine-methyl ester" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H17NO3">
+      <species metaid="M_MAM01767r" sboTerm="SBO:0000247" id="M_MAM01767r" name="ecgonine-methyl ester" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H17NO3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01767r">
+            <rdf:Description rdf:about="#M_MAM01767r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/egme"/>
@@ -48113,10 +48149,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01768c" sboTerm="SBO:0000247" id="MAM01768c" name="edaravone" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H10N2O">
+      <species metaid="M_MAM01768c" sboTerm="SBO:0000247" id="M_MAM01768c" name="edaravone" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H10N2O">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01768c">
+            <rdf:Description rdf:about="#M_MAM01768c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dmantipyrine"/>
@@ -48132,10 +48168,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01768e" sboTerm="SBO:0000247" id="MAM01768e" name="edaravone" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H10N2O">
+      <species metaid="M_MAM01768e" sboTerm="SBO:0000247" id="M_MAM01768e" name="edaravone" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H10N2O">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01768e">
+            <rdf:Description rdf:about="#M_MAM01768e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dmantipyrine"/>
@@ -48151,10 +48187,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01769c" sboTerm="SBO:0000247" id="MAM01769c" name="eicosa-(2E,8Z,11Z,14Z,17Z)-pentaenoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H60N7O17P3S">
+      <species metaid="M_MAM01769c" sboTerm="SBO:0000247" id="M_MAM01769c" name="eicosa-(2E,8Z,11Z,14Z,17Z)-pentaenoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H60N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01769c">
+            <rdf:Description rdf:about="#M_MAM01769c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM164756"/>
@@ -48165,10 +48201,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01770c" sboTerm="SBO:0000247" id="MAM01770c" name="eicosadienoylcarnitine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H49NO4">
+      <species metaid="M_MAM01770c" sboTerm="SBO:0000247" id="M_MAM01770c" name="eicosadienoylcarnitine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H49NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01770c">
+            <rdf:Description rdf:about="#M_MAM01770c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM149270"/>
@@ -48179,10 +48215,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01770m" sboTerm="SBO:0000247" id="MAM01770m" name="eicosadienoylcarnitine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H49NO4">
+      <species metaid="M_MAM01770m" sboTerm="SBO:0000247" id="M_MAM01770m" name="eicosadienoylcarnitine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H49NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01770m">
+            <rdf:Description rdf:about="#M_MAM01770m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM149270"/>
@@ -48193,10 +48229,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01770r" sboTerm="SBO:0000247" id="MAM01770r" name="eicosadienoylcarnitine" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H49NO4">
+      <species metaid="M_MAM01770r" sboTerm="SBO:0000247" id="M_MAM01770r" name="eicosadienoylcarnitine" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H49NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01770r">
+            <rdf:Description rdf:about="#M_MAM01770r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM149270"/>
@@ -48207,10 +48243,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01771c" sboTerm="SBO:0000247" id="MAM01771c" name="eicosanoate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H39O2">
+      <species metaid="M_MAM01771c" sboTerm="SBO:0000247" id="M_MAM01771c" name="eicosanoate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H39O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01771c">
+            <rdf:Description rdf:about="#M_MAM01771c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/arach"/>
@@ -48227,10 +48263,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01771l" sboTerm="SBO:0000247" id="MAM01771l" name="eicosanoate" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H39O2">
+      <species metaid="M_MAM01771l" sboTerm="SBO:0000247" id="M_MAM01771l" name="eicosanoate" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H39O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01771l">
+            <rdf:Description rdf:about="#M_MAM01771l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/arach"/>
@@ -48247,10 +48283,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01771r" sboTerm="SBO:0000247" id="MAM01771r" name="eicosanoate" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H39O2">
+      <species metaid="M_MAM01771r" sboTerm="SBO:0000247" id="M_MAM01771r" name="eicosanoate" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H39O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01771r">
+            <rdf:Description rdf:about="#M_MAM01771r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/arach"/>
@@ -48267,10 +48303,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01771e" sboTerm="SBO:0000247" id="MAM01771e" name="eicosanoate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H39O2">
+      <species metaid="M_MAM01771e" sboTerm="SBO:0000247" id="M_MAM01771e" name="eicosanoate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H39O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01771e">
+            <rdf:Description rdf:about="#M_MAM01771e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/arach"/>
@@ -48287,10 +48323,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01772c" sboTerm="SBO:0000247" id="MAM01772c" name="eicosanoylcarnitine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H53NO4">
+      <species metaid="M_MAM01772c" sboTerm="SBO:0000247" id="M_MAM01772c" name="eicosanoylcarnitine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H53NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01772c">
+            <rdf:Description rdf:about="#M_MAM01772c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/arachcrn"/>
@@ -48303,10 +48339,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01772m" sboTerm="SBO:0000247" id="MAM01772m" name="eicosanoylcarnitine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H53NO4">
+      <species metaid="M_MAM01772m" sboTerm="SBO:0000247" id="M_MAM01772m" name="eicosanoylcarnitine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H53NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01772m">
+            <rdf:Description rdf:about="#M_MAM01772m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/arachcrn"/>
@@ -48319,10 +48355,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01772r" sboTerm="SBO:0000247" id="MAM01772r" name="eicosanoylcarnitine" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H53NO4">
+      <species metaid="M_MAM01772r" sboTerm="SBO:0000247" id="M_MAM01772r" name="eicosanoylcarnitine" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H53NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01772r">
+            <rdf:Description rdf:about="#M_MAM01772r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/arachcrn"/>
@@ -48335,10 +48371,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01773c" sboTerm="SBO:0000247" id="MAM01773c" name="eicosanoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H70N7O17P3S">
+      <species metaid="M_MAM01773c" sboTerm="SBO:0000247" id="M_MAM01773c" name="eicosanoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H70N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01773c">
+            <rdf:Description rdf:about="#M_MAM01773c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/arachcoa"/>
@@ -48356,10 +48392,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01773m" sboTerm="SBO:0000247" id="MAM01773m" name="eicosanoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H70N7O17P3S">
+      <species metaid="M_MAM01773m" sboTerm="SBO:0000247" id="M_MAM01773m" name="eicosanoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H70N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01773m">
+            <rdf:Description rdf:about="#M_MAM01773m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/arachcoa"/>
@@ -48377,10 +48413,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01773x" sboTerm="SBO:0000247" id="MAM01773x" name="eicosanoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H70N7O17P3S">
+      <species metaid="M_MAM01773x" sboTerm="SBO:0000247" id="M_MAM01773x" name="eicosanoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H70N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01773x">
+            <rdf:Description rdf:about="#M_MAM01773x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/arachcoa"/>
@@ -48398,10 +48434,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01773r" sboTerm="SBO:0000247" id="MAM01773r" name="eicosanoyl-CoA" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H70N7O17P3S">
+      <species metaid="M_MAM01773r" sboTerm="SBO:0000247" id="M_MAM01773r" name="eicosanoyl-CoA" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H70N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01773r">
+            <rdf:Description rdf:about="#M_MAM01773r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/arachcoa"/>
@@ -48419,10 +48455,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01774c" sboTerm="SBO:0000247" id="MAM01774c" name="eicosatrienoylcarnitine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H47NO4">
+      <species metaid="M_MAM01774c" sboTerm="SBO:0000247" id="M_MAM01774c" name="eicosatrienoylcarnitine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H47NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01774c">
+            <rdf:Description rdf:about="#M_MAM01774c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dlnlcgcrn"/>
@@ -48434,10 +48470,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01774m" sboTerm="SBO:0000247" id="MAM01774m" name="eicosatrienoylcarnitine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H47NO4">
+      <species metaid="M_MAM01774m" sboTerm="SBO:0000247" id="M_MAM01774m" name="eicosatrienoylcarnitine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H47NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01774m">
+            <rdf:Description rdf:about="#M_MAM01774m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dlnlcgcrn"/>
@@ -48449,10 +48485,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01774r" sboTerm="SBO:0000247" id="MAM01774r" name="eicosatrienoylcarnitine" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H47NO4">
+      <species metaid="M_MAM01774r" sboTerm="SBO:0000247" id="M_MAM01774r" name="eicosatrienoylcarnitine" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H47NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01774r">
+            <rdf:Description rdf:about="#M_MAM01774r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dlnlcgcrn"/>
@@ -48464,10 +48500,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01775c" sboTerm="SBO:0000247" id="MAM01775c" name="eicosenoylcarnitine(11)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H51NO4">
+      <species metaid="M_MAM01775c" sboTerm="SBO:0000247" id="M_MAM01775c" name="eicosenoylcarnitine(11)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H51NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01775c">
+            <rdf:Description rdf:about="#M_MAM01775c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M01775"/>
@@ -48477,10 +48513,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01775m" sboTerm="SBO:0000247" id="MAM01775m" name="eicosenoylcarnitine(11)" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H51NO4">
+      <species metaid="M_MAM01775m" sboTerm="SBO:0000247" id="M_MAM01775m" name="eicosenoylcarnitine(11)" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H51NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01775m">
+            <rdf:Description rdf:about="#M_MAM01775m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M01775"/>
@@ -48490,10 +48526,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01775r" sboTerm="SBO:0000247" id="MAM01775r" name="eicosenoylcarnitine(11)" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H51NO4">
+      <species metaid="M_MAM01775r" sboTerm="SBO:0000247" id="M_MAM01775r" name="eicosenoylcarnitine(11)" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H51NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01775r">
+            <rdf:Description rdf:about="#M_MAM01775r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M01775"/>
@@ -48503,10 +48539,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01776c" sboTerm="SBO:0000247" id="MAM01776c" name="eicosenoylcarnitine(7)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H51NO4">
+      <species metaid="M_MAM01776c" sboTerm="SBO:0000247" id="M_MAM01776c" name="eicosenoylcarnitine(7)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H51NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01776c">
+            <rdf:Description rdf:about="#M_MAM01776c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M01776"/>
@@ -48516,10 +48552,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01776m" sboTerm="SBO:0000247" id="MAM01776m" name="eicosenoylcarnitine(7)" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H51NO4">
+      <species metaid="M_MAM01776m" sboTerm="SBO:0000247" id="M_MAM01776m" name="eicosenoylcarnitine(7)" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H51NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01776m">
+            <rdf:Description rdf:about="#M_MAM01776m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M01776"/>
@@ -48529,10 +48565,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01776r" sboTerm="SBO:0000247" id="MAM01776r" name="eicosenoylcarnitine(7)" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H51NO4">
+      <species metaid="M_MAM01776r" sboTerm="SBO:0000247" id="M_MAM01776r" name="eicosenoylcarnitine(7)" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H51NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01776r">
+            <rdf:Description rdf:about="#M_MAM01776r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M01776"/>
@@ -48542,10 +48578,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01777c" sboTerm="SBO:0000247" id="MAM01777c" name="eicosenoylcarnitine(9)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H51NO4">
+      <species metaid="M_MAM01777c" sboTerm="SBO:0000247" id="M_MAM01777c" name="eicosenoylcarnitine(9)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H51NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01777c">
+            <rdf:Description rdf:about="#M_MAM01777c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M01777"/>
@@ -48555,10 +48591,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01777m" sboTerm="SBO:0000247" id="MAM01777m" name="eicosenoylcarnitine(9)" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H51NO4">
+      <species metaid="M_MAM01777m" sboTerm="SBO:0000247" id="M_MAM01777m" name="eicosenoylcarnitine(9)" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H51NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01777m">
+            <rdf:Description rdf:about="#M_MAM01777m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M01777"/>
@@ -48568,10 +48604,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01777r" sboTerm="SBO:0000247" id="MAM01777r" name="eicosenoylcarnitine(9)" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H51NO4">
+      <species metaid="M_MAM01777r" sboTerm="SBO:0000247" id="M_MAM01777r" name="eicosenoylcarnitine(9)" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H51NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01777r">
+            <rdf:Description rdf:about="#M_MAM01777r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M01777"/>
@@ -48581,10 +48617,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01778c" sboTerm="SBO:0000247" id="MAM01778c" name="elaidate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H33O2">
+      <species metaid="M_MAM01778c" sboTerm="SBO:0000247" id="M_MAM01778c" name="elaidate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H33O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01778c">
+            <rdf:Description rdf:about="#M_MAM01778c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/elaid"/>
@@ -48604,10 +48640,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01778l" sboTerm="SBO:0000247" id="MAM01778l" name="elaidate" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H33O2">
+      <species metaid="M_MAM01778l" sboTerm="SBO:0000247" id="M_MAM01778l" name="elaidate" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H33O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01778l">
+            <rdf:Description rdf:about="#M_MAM01778l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/elaid"/>
@@ -48627,10 +48663,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01778r" sboTerm="SBO:0000247" id="MAM01778r" name="elaidate" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H33O2">
+      <species metaid="M_MAM01778r" sboTerm="SBO:0000247" id="M_MAM01778r" name="elaidate" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H33O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01778r">
+            <rdf:Description rdf:about="#M_MAM01778r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/elaid"/>
@@ -48650,10 +48686,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01778e" sboTerm="SBO:0000247" id="MAM01778e" name="elaidate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H33O2">
+      <species metaid="M_MAM01778e" sboTerm="SBO:0000247" id="M_MAM01778e" name="elaidate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H33O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01778e">
+            <rdf:Description rdf:about="#M_MAM01778e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/elaid"/>
@@ -48673,10 +48709,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01779r" sboTerm="SBO:0000247" id="MAM01779r" name="em2emgacpail heparan sulfate" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C55H100N3O39P3R2">
+      <species metaid="M_MAM01779r" sboTerm="SBO:0000247" id="M_MAM01779r" name="em2emgacpail heparan sulfate" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C55H100N3O39P3R2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01779r">
+            <rdf:Description rdf:about="#M_MAM01779r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/em2emgacpail_hs"/>
@@ -48688,10 +48724,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01780r" sboTerm="SBO:0000247" id="MAM01780r" name="em2emgacpail_prot heparan sulfate" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C55H100N3O39P3R2X">
+      <species metaid="M_MAM01780r" sboTerm="SBO:0000247" id="M_MAM01780r" name="em2emgacpail_prot heparan sulfate" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C55H100N3O39P3R2X">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01780r">
+            <rdf:Description rdf:about="#M_MAM01780r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/em2emgacpail_prot_hs"/>
@@ -48703,10 +48739,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01781r" sboTerm="SBO:0000247" id="MAM01781r" name="em3gacpail heparan sulfate" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C53H94N2O36P2R2">
+      <species metaid="M_MAM01781r" sboTerm="SBO:0000247" id="M_MAM01781r" name="em3gacpail heparan sulfate" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C53H94N2O36P2R2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01781r">
+            <rdf:Description rdf:about="#M_MAM01781r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/em3gacpail_hs"/>
@@ -48718,10 +48754,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01782r" sboTerm="SBO:0000247" id="MAM01782r" name="emem2gacpail heparan sulfate" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C55H100N3O39P3R2">
+      <species metaid="M_MAM01782r" sboTerm="SBO:0000247" id="M_MAM01782r" name="emem2gacpail heparan sulfate" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C55H100N3O39P3R2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01782r">
+            <rdf:Description rdf:about="#M_MAM01782r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/emem2gacpail_hs"/>
@@ -48733,10 +48769,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01783r" sboTerm="SBO:0000247" id="MAM01783r" name="emgacpail heparan sulfate" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C41H74N2O26P2R2">
+      <species metaid="M_MAM01783r" sboTerm="SBO:0000247" id="M_MAM01783r" name="emgacpail heparan sulfate" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C41H74N2O26P2R2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01783r">
+            <rdf:Description rdf:about="#M_MAM01783r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/emgacpail_hs"/>
@@ -48748,10 +48784,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01784c" sboTerm="SBO:0000247" id="MAM01784c" name="EPA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H29O2">
+      <species metaid="M_MAM01784c" sboTerm="SBO:0000247" id="M_MAM01784c" name="EPA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H29O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01784c">
+            <rdf:Description rdf:about="#M_MAM01784c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/tmndnc"/>
@@ -48769,10 +48805,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01784l" sboTerm="SBO:0000247" id="MAM01784l" name="EPA" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H29O2">
+      <species metaid="M_MAM01784l" sboTerm="SBO:0000247" id="M_MAM01784l" name="EPA" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H29O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01784l">
+            <rdf:Description rdf:about="#M_MAM01784l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/tmndnc"/>
@@ -48790,10 +48826,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01784n" sboTerm="SBO:0000247" id="MAM01784n" name="EPA" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H29O2">
+      <species metaid="M_MAM01784n" sboTerm="SBO:0000247" id="M_MAM01784n" name="EPA" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H29O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01784n">
+            <rdf:Description rdf:about="#M_MAM01784n">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/tmndnc"/>
@@ -48811,10 +48847,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01784x" sboTerm="SBO:0000247" id="MAM01784x" name="EPA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H29O2">
+      <species metaid="M_MAM01784x" sboTerm="SBO:0000247" id="M_MAM01784x" name="EPA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H29O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01784x">
+            <rdf:Description rdf:about="#M_MAM01784x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/tmndnc"/>
@@ -48832,10 +48868,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01784r" sboTerm="SBO:0000247" id="MAM01784r" name="EPA" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H29O2">
+      <species metaid="M_MAM01784r" sboTerm="SBO:0000247" id="M_MAM01784r" name="EPA" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H29O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01784r">
+            <rdf:Description rdf:about="#M_MAM01784r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/tmndnc"/>
@@ -48853,10 +48889,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01784e" sboTerm="SBO:0000247" id="MAM01784e" name="EPA" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H29O2">
+      <species metaid="M_MAM01784e" sboTerm="SBO:0000247" id="M_MAM01784e" name="EPA" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H29O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01784e">
+            <rdf:Description rdf:about="#M_MAM01784e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/tmndnc"/>
@@ -48874,10 +48910,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01785c" sboTerm="SBO:0000247" id="MAM01785c" name="erythrose-4-phosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C4H7O7P">
+      <species metaid="M_MAM01785c" sboTerm="SBO:0000247" id="M_MAM01785c" name="erythrose-4-phosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C4H7O7P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01785c">
+            <rdf:Description rdf:about="#M_MAM01785c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/e4p"/>
@@ -48892,10 +48928,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01786c" sboTerm="SBO:0000247" id="MAM01786c" name="estradiol-17beta 3-glucuronide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C24H32O8">
+      <species metaid="M_MAM01786c" sboTerm="SBO:0000247" id="M_MAM01786c" name="estradiol-17beta 3-glucuronide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C24H32O8">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01786c">
+            <rdf:Description rdf:about="#M_MAM01786c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/estradiolglc"/>
@@ -48912,10 +48948,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01786r" sboTerm="SBO:0000247" id="MAM01786r" name="estradiol-17beta 3-glucuronide" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C24H32O8">
+      <species metaid="M_MAM01786r" sboTerm="SBO:0000247" id="M_MAM01786r" name="estradiol-17beta 3-glucuronide" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C24H32O8">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01786r">
+            <rdf:Description rdf:about="#M_MAM01786r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/estradiolglc"/>
@@ -48932,10 +48968,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01786e" sboTerm="SBO:0000247" id="MAM01786e" name="estradiol-17beta 3-glucuronide" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C24H32O8">
+      <species metaid="M_MAM01786e" sboTerm="SBO:0000247" id="M_MAM01786e" name="estradiol-17beta 3-glucuronide" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C24H32O8">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01786e">
+            <rdf:Description rdf:about="#M_MAM01786e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/estradiolglc"/>
@@ -48952,10 +48988,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01787c" sboTerm="SBO:0000247" id="MAM01787c" name="estradiol-17beta" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H24O2">
+      <species metaid="M_MAM01787c" sboTerm="SBO:0000247" id="M_MAM01787c" name="estradiol-17beta" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H24O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01787c">
+            <rdf:Description rdf:about="#M_MAM01787c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/estradiol"/>
@@ -48972,10 +49008,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01787r" sboTerm="SBO:0000247" id="MAM01787r" name="estradiol-17beta" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H24O2">
+      <species metaid="M_MAM01787r" sboTerm="SBO:0000247" id="M_MAM01787r" name="estradiol-17beta" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H24O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01787r">
+            <rdf:Description rdf:about="#M_MAM01787r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/estradiol"/>
@@ -48992,10 +49028,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01787e" sboTerm="SBO:0000247" id="MAM01787e" name="estradiol-17beta" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H24O2">
+      <species metaid="M_MAM01787e" sboTerm="SBO:0000247" id="M_MAM01787e" name="estradiol-17beta" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H24O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01787e">
+            <rdf:Description rdf:about="#M_MAM01787e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/estradiol"/>
@@ -49012,10 +49048,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01788c" sboTerm="SBO:0000247" id="MAM01788c" name="estriol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H24O3">
+      <species metaid="M_MAM01788c" sboTerm="SBO:0000247" id="M_MAM01788c" name="estriol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H24O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01788c">
+            <rdf:Description rdf:about="#M_MAM01788c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/estriol"/>
@@ -49031,10 +49067,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01788r" sboTerm="SBO:0000247" id="MAM01788r" name="estriol" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H24O3">
+      <species metaid="M_MAM01788r" sboTerm="SBO:0000247" id="M_MAM01788r" name="estriol" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H24O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01788r">
+            <rdf:Description rdf:about="#M_MAM01788r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/estriol"/>
@@ -49050,10 +49086,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01788e" sboTerm="SBO:0000247" id="MAM01788e" name="estriol" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H24O3">
+      <species metaid="M_MAM01788e" sboTerm="SBO:0000247" id="M_MAM01788e" name="estriol" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H24O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01788e">
+            <rdf:Description rdf:about="#M_MAM01788e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/estriol"/>
@@ -49069,10 +49105,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01789c" sboTerm="SBO:0000247" id="MAM01789c" name="estrone 3-sulfate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H21O5S">
+      <species metaid="M_MAM01789c" sboTerm="SBO:0000247" id="M_MAM01789c" name="estrone 3-sulfate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H21O5S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01789c">
+            <rdf:Description rdf:about="#M_MAM01789c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/estrones"/>
@@ -49088,10 +49124,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01789r" sboTerm="SBO:0000247" id="MAM01789r" name="estrone 3-sulfate" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H21O5S">
+      <species metaid="M_MAM01789r" sboTerm="SBO:0000247" id="M_MAM01789r" name="estrone 3-sulfate" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H21O5S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01789r">
+            <rdf:Description rdf:about="#M_MAM01789r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/estrones"/>
@@ -49107,10 +49143,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01789e" sboTerm="SBO:0000247" id="MAM01789e" name="estrone 3-sulfate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H21O5S">
+      <species metaid="M_MAM01789e" sboTerm="SBO:0000247" id="M_MAM01789e" name="estrone 3-sulfate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H21O5S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01789e">
+            <rdf:Description rdf:about="#M_MAM01789e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/estrones"/>
@@ -49126,10 +49162,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01790c" sboTerm="SBO:0000247" id="MAM01790c" name="estrone" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H22O2">
+      <species metaid="M_MAM01790c" sboTerm="SBO:0000247" id="M_MAM01790c" name="estrone" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H22O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01790c">
+            <rdf:Description rdf:about="#M_MAM01790c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/estrone"/>
@@ -49147,10 +49183,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01790l" sboTerm="SBO:0000247" id="MAM01790l" name="estrone" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H22O2">
+      <species metaid="M_MAM01790l" sboTerm="SBO:0000247" id="M_MAM01790l" name="estrone" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H22O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01790l">
+            <rdf:Description rdf:about="#M_MAM01790l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/estrone"/>
@@ -49168,10 +49204,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01790r" sboTerm="SBO:0000247" id="MAM01790r" name="estrone" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H22O2">
+      <species metaid="M_MAM01790r" sboTerm="SBO:0000247" id="M_MAM01790r" name="estrone" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H22O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01790r">
+            <rdf:Description rdf:about="#M_MAM01790r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/estrone"/>
@@ -49189,10 +49225,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01791c" sboTerm="SBO:0000247" id="MAM01791c" name="estrone-2,3-quinone" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H20O3">
+      <species metaid="M_MAM01791c" sboTerm="SBO:0000247" id="M_MAM01791c" name="estrone-2,3-quinone" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H20O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01791c">
+            <rdf:Description rdf:about="#M_MAM01791c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM52646"/>
@@ -49204,10 +49240,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01791m" sboTerm="SBO:0000247" id="MAM01791m" name="estrone-2,3-quinone" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H20O3">
+      <species metaid="M_MAM01791m" sboTerm="SBO:0000247" id="M_MAM01791m" name="estrone-2,3-quinone" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H20O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01791m">
+            <rdf:Description rdf:about="#M_MAM01791m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM52646"/>
@@ -49219,10 +49255,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01791x" sboTerm="SBO:0000247" id="MAM01791x" name="estrone-2,3-quinone" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H20O3">
+      <species metaid="M_MAM01791x" sboTerm="SBO:0000247" id="M_MAM01791x" name="estrone-2,3-quinone" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H20O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01791x">
+            <rdf:Description rdf:about="#M_MAM01791x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM52646"/>
@@ -49234,10 +49270,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01791r" sboTerm="SBO:0000247" id="MAM01791r" name="estrone-2,3-quinone" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H20O3">
+      <species metaid="M_MAM01791r" sboTerm="SBO:0000247" id="M_MAM01791r" name="estrone-2,3-quinone" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H20O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01791r">
+            <rdf:Description rdf:about="#M_MAM01791r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM52646"/>
@@ -49249,10 +49285,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01792c" sboTerm="SBO:0000247" id="MAM01792c" name="estrone-2,3-semiquinone" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H21O3">
+      <species metaid="M_MAM01792c" sboTerm="SBO:0000247" id="M_MAM01792c" name="estrone-2,3-semiquinone" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H21O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01792c">
+            <rdf:Description rdf:about="#M_MAM01792c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM167709"/>
@@ -49263,10 +49299,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01792l" sboTerm="SBO:0000247" id="MAM01792l" name="estrone-2,3-semiquinone" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H21O3">
+      <species metaid="M_MAM01792l" sboTerm="SBO:0000247" id="M_MAM01792l" name="estrone-2,3-semiquinone" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H21O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01792l">
+            <rdf:Description rdf:about="#M_MAM01792l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM167709"/>
@@ -49277,10 +49313,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM01792r" sboTerm="SBO:0000247" id="MAM01792r" name="estrone-2,3-semiquinone" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H21O3">
+      <species metaid="M_MAM01792r" sboTerm="SBO:0000247" id="M_MAM01792r" name="estrone-2,3-semiquinone" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H21O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01792r">
+            <rdf:Description rdf:about="#M_MAM01792r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM167709"/>
@@ -49291,10 +49327,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01793c" sboTerm="SBO:0000247" id="MAM01793c" name="estrone-3,4-quinone" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H20O3">
+      <species metaid="M_MAM01793c" sboTerm="SBO:0000247" id="M_MAM01793c" name="estrone-3,4-quinone" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H20O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01793c">
+            <rdf:Description rdf:about="#M_MAM01793c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM52647"/>
@@ -49306,10 +49342,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM01793m" sboTerm="SBO:0000247" id="MAM01793m" name="estrone-3,4-quinone" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H20O3">
+      <species metaid="M_MAM01793m" sboTerm="SBO:0000247" id="M_MAM01793m" name="estrone-3,4-quinone" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H20O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01793m">
+            <rdf:Description rdf:about="#M_MAM01793m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM52647"/>
@@ -49321,10 +49357,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM01793x" sboTerm="SBO:0000247" id="MAM01793x" name="estrone-3,4-quinone" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H20O3">
+      <species metaid="M_MAM01793x" sboTerm="SBO:0000247" id="M_MAM01793x" name="estrone-3,4-quinone" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H20O3">
         <annotation>
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-            <rdf:Description rdf:about="#MAM01793x">
+            <rdf:Description rdf:about="#M_MAM01793x">
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                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM52647"/>
@@ -49336,10 +49372,10 @@
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-      <species metaid="MAM01793r" sboTerm="SBO:0000247" id="MAM01793r" name="estrone-3,4-quinone" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H20O3">
+      <species metaid="M_MAM01793r" sboTerm="SBO:0000247" id="M_MAM01793r" name="estrone-3,4-quinone" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H20O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01793r">
+            <rdf:Description rdf:about="#M_MAM01793r">
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                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM52647"/>
@@ -49351,10 +49387,10 @@
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-      <species metaid="MAM01794c" sboTerm="SBO:0000247" id="MAM01794c" name="estrone-3,4-semiquinone" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H21O3">
+      <species metaid="M_MAM01794c" sboTerm="SBO:0000247" id="M_MAM01794c" name="estrone-3,4-semiquinone" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H21O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01794c">
+            <rdf:Description rdf:about="#M_MAM01794c">
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                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM167710"/>
@@ -49365,10 +49401,10 @@
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-      <species metaid="MAM01794l" sboTerm="SBO:0000247" id="MAM01794l" name="estrone-3,4-semiquinone" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H21O3">
+      <species metaid="M_MAM01794l" sboTerm="SBO:0000247" id="M_MAM01794l" name="estrone-3,4-semiquinone" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H21O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01794l">
+            <rdf:Description rdf:about="#M_MAM01794l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM167710"/>
@@ -49379,10 +49415,10 @@
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+      <species metaid="M_MAM01794r" sboTerm="SBO:0000247" id="M_MAM01794r" name="estrone-3,4-semiquinone" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H21O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01794r">
+            <rdf:Description rdf:about="#M_MAM01794r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM167710"/>
@@ -49393,10 +49429,10 @@
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         </annotation>
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-      <species metaid="MAM01795c" sboTerm="SBO:0000247" id="MAM01795c" name="estrone-glucuronide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C24H30O8">
+      <species metaid="M_MAM01795c" sboTerm="SBO:0000247" id="M_MAM01795c" name="estrone-glucuronide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C24H30O8">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01795c">
+            <rdf:Description rdf:about="#M_MAM01795c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/estroneglc"/>
@@ -49412,10 +49448,10 @@
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         </annotation>
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-      <species metaid="MAM01795r" sboTerm="SBO:0000247" id="MAM01795r" name="estrone-glucuronide" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C24H30O8">
+      <species metaid="M_MAM01795r" sboTerm="SBO:0000247" id="M_MAM01795r" name="estrone-glucuronide" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C24H30O8">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01795r">
+            <rdf:Description rdf:about="#M_MAM01795r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/estroneglc"/>
@@ -49431,10 +49467,10 @@
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         </annotation>
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-      <species metaid="MAM01795e" sboTerm="SBO:0000247" id="MAM01795e" name="estrone-glucuronide" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C24H30O8">
+      <species metaid="M_MAM01795e" sboTerm="SBO:0000247" id="M_MAM01795e" name="estrone-glucuronide" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C24H30O8">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01795e">
+            <rdf:Description rdf:about="#M_MAM01795e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/estroneglc"/>
@@ -49450,10 +49486,10 @@
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         </annotation>
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-      <species metaid="MAM01796c" sboTerm="SBO:0000247" id="MAM01796c" name="ethanol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C2H6O">
+      <species metaid="M_MAM01796c" sboTerm="SBO:0000247" id="M_MAM01796c" name="ethanol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C2H6O">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01796c">
+            <rdf:Description rdf:about="#M_MAM01796c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/etoh"/>
@@ -49469,10 +49505,10 @@
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         </annotation>
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-      <species metaid="MAM01796x" sboTerm="SBO:0000247" id="MAM01796x" name="ethanol" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C2H6O">
+      <species metaid="M_MAM01796x" sboTerm="SBO:0000247" id="M_MAM01796x" name="ethanol" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C2H6O">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01796x">
+            <rdf:Description rdf:about="#M_MAM01796x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/etoh"/>
@@ -49488,10 +49524,10 @@
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         </annotation>
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-      <species metaid="MAM01796e" sboTerm="SBO:0000247" id="MAM01796e" name="ethanol" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C2H6O">
+      <species metaid="M_MAM01796e" sboTerm="SBO:0000247" id="M_MAM01796e" name="ethanol" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C2H6O">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01796e">
+            <rdf:Description rdf:about="#M_MAM01796e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/etoh"/>
@@ -49507,10 +49543,10 @@
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         </annotation>
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-      <species metaid="MAM01797c" sboTerm="SBO:0000247" id="MAM01797c" name="ethanolamine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C2H8NO">
+      <species metaid="M_MAM01797c" sboTerm="SBO:0000247" id="M_MAM01797c" name="ethanolamine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C2H8NO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01797c">
+            <rdf:Description rdf:about="#M_MAM01797c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/etha"/>
@@ -49526,10 +49562,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01797e" sboTerm="SBO:0000247" id="MAM01797e" name="ethanolamine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C2H8NO">
+      <species metaid="M_MAM01797e" sboTerm="SBO:0000247" id="M_MAM01797e" name="ethanolamine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C2H8NO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01797e">
+            <rdf:Description rdf:about="#M_MAM01797e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/etha"/>
@@ -49545,10 +49581,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01798c" sboTerm="SBO:0000247" id="MAM01798c" name="ethanolamine-phosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C2H7NO4P">
+      <species metaid="M_MAM01798c" sboTerm="SBO:0000247" id="M_MAM01798c" name="ethanolamine-phosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C2H7NO4P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01798c">
+            <rdf:Description rdf:about="#M_MAM01798c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ethamp"/>
@@ -49564,10 +49600,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM01798r" sboTerm="SBO:0000247" id="MAM01798r" name="ethanolamine-phosphate" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C2H7NO4P">
+      <species metaid="M_MAM01798r" sboTerm="SBO:0000247" id="M_MAM01798r" name="ethanolamine-phosphate" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C2H7NO4P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01798r">
+            <rdf:Description rdf:about="#M_MAM01798r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ethamp"/>
@@ -49583,10 +49619,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01799c" sboTerm="SBO:0000247" id="MAM01799c" name="etiocholan-3alpha-ol-17-one 3-glucuronide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H38O8">
+      <species metaid="M_MAM01799c" sboTerm="SBO:0000247" id="M_MAM01799c" name="etiocholan-3alpha-ol-17-one 3-glucuronide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H38O8">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01799c">
+            <rdf:Description rdf:about="#M_MAM01799c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ahandrostanglc"/>
@@ -49602,10 +49638,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01799r" sboTerm="SBO:0000247" id="MAM01799r" name="etiocholan-3alpha-ol-17-one 3-glucuronide" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H38O8">
+      <species metaid="M_MAM01799r" sboTerm="SBO:0000247" id="M_MAM01799r" name="etiocholan-3alpha-ol-17-one 3-glucuronide" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H38O8">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01799r">
+            <rdf:Description rdf:about="#M_MAM01799r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ahandrostanglc"/>
@@ -49621,10 +49657,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01799e" sboTerm="SBO:0000247" id="MAM01799e" name="etiocholan-3alpha-ol-17-one 3-glucuronide" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H38O8">
+      <species metaid="M_MAM01799e" sboTerm="SBO:0000247" id="M_MAM01799e" name="etiocholan-3alpha-ol-17-one 3-glucuronide" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H38O8">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01799e">
+            <rdf:Description rdf:about="#M_MAM01799e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ahandrostanglc"/>
@@ -49640,10 +49676,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01800c" sboTerm="SBO:0000247" id="MAM01800c" name="etiocholanolone" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H30O2">
+      <species metaid="M_MAM01800c" sboTerm="SBO:0000247" id="M_MAM01800c" name="etiocholanolone" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H30O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01800c">
+            <rdf:Description rdf:about="#M_MAM01800c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ahandrostan"/>
@@ -49659,10 +49695,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01800r" sboTerm="SBO:0000247" id="MAM01800r" name="etiocholanolone" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H30O2">
+      <species metaid="M_MAM01800r" sboTerm="SBO:0000247" id="M_MAM01800r" name="etiocholanolone" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H30O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01800r">
+            <rdf:Description rdf:about="#M_MAM01800r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ahandrostan"/>
@@ -49678,10 +49714,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01800e" sboTerm="SBO:0000247" id="MAM01800e" name="etiocholanolone" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H30O2">
+      <species metaid="M_MAM01800e" sboTerm="SBO:0000247" id="M_MAM01800e" name="etiocholanolone" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H30O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01800e">
+            <rdf:Description rdf:about="#M_MAM01800e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ahandrostan"/>
@@ -49697,10 +49733,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01801g" sboTerm="SBO:0000247" id="MAM01801g" name="F1alpha" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C22H37N2O15X">
+      <species metaid="M_MAM01801g" sboTerm="SBO:0000247" id="M_MAM01801g" name="F1alpha" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C22H37N2O15X">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01801g">
+            <rdf:Description rdf:about="#M_MAM01801g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/f1a"/>
@@ -49712,10 +49748,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01801l" sboTerm="SBO:0000247" id="MAM01801l" name="F1alpha" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C22H37N2O15X">
+      <species metaid="M_MAM01801l" sboTerm="SBO:0000247" id="M_MAM01801l" name="F1alpha" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C22H37N2O15X">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01801l">
+            <rdf:Description rdf:about="#M_MAM01801l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/f1a"/>
@@ -49727,10 +49763,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01802c" sboTerm="SBO:0000247" id="MAM01802c" name="FAD" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C27H31N9O15P2">
+      <species metaid="M_MAM01802c" sboTerm="SBO:0000247" id="M_MAM01802c" name="FAD" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C27H31N9O15P2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01802c">
+            <rdf:Description rdf:about="#M_MAM01802c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/fad"/>
@@ -49746,10 +49782,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01802m" sboTerm="SBO:0000247" id="MAM01802m" name="FAD" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C27H31N9O15P2">
+      <species metaid="M_MAM01802m" sboTerm="SBO:0000247" id="M_MAM01802m" name="FAD" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C27H31N9O15P2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01802m">
+            <rdf:Description rdf:about="#M_MAM01802m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/fad"/>
@@ -49765,10 +49801,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01802x" sboTerm="SBO:0000247" id="MAM01802x" name="FAD" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C27H31N9O15P2">
+      <species metaid="M_MAM01802x" sboTerm="SBO:0000247" id="M_MAM01802x" name="FAD" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C27H31N9O15P2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01802x">
+            <rdf:Description rdf:about="#M_MAM01802x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/fad"/>
@@ -49784,10 +49820,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01802r" sboTerm="SBO:0000247" id="MAM01802r" name="FAD" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C27H31N9O15P2">
+      <species metaid="M_MAM01802r" sboTerm="SBO:0000247" id="M_MAM01802r" name="FAD" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C27H31N9O15P2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01802r">
+            <rdf:Description rdf:about="#M_MAM01802r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/fad"/>
@@ -49803,10 +49839,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01802e" sboTerm="SBO:0000247" id="MAM01802e" name="FAD" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C27H31N9O15P2">
+      <species metaid="M_MAM01802e" sboTerm="SBO:0000247" id="M_MAM01802e" name="FAD" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C27H31N9O15P2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01802e">
+            <rdf:Description rdf:about="#M_MAM01802e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/fad"/>
@@ -49822,10 +49858,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01803c" sboTerm="SBO:0000247" id="MAM01803c" name="FADH2" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C27H33N9O15P2">
+      <species metaid="M_MAM01803c" sboTerm="SBO:0000247" id="M_MAM01803c" name="FADH2" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C27H33N9O15P2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01803c">
+            <rdf:Description rdf:about="#M_MAM01803c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/fadh2"/>
@@ -49841,10 +49877,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01803m" sboTerm="SBO:0000247" id="MAM01803m" name="FADH2" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C27H33N9O15P2">
+      <species metaid="M_MAM01803m" sboTerm="SBO:0000247" id="M_MAM01803m" name="FADH2" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C27H33N9O15P2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01803m">
+            <rdf:Description rdf:about="#M_MAM01803m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/fadh2"/>
@@ -49860,10 +49896,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01803x" sboTerm="SBO:0000247" id="MAM01803x" name="FADH2" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C27H33N9O15P2">
+      <species metaid="M_MAM01803x" sboTerm="SBO:0000247" id="M_MAM01803x" name="FADH2" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C27H33N9O15P2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01803x">
+            <rdf:Description rdf:about="#M_MAM01803x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/fadh2"/>
@@ -49879,10 +49915,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01803r" sboTerm="SBO:0000247" id="MAM01803r" name="FADH2" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C27H33N9O15P2">
+      <species metaid="M_MAM01803r" sboTerm="SBO:0000247" id="M_MAM01803r" name="FADH2" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C27H33N9O15P2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01803r">
+            <rdf:Description rdf:about="#M_MAM01803r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/fadh2"/>
@@ -49898,10 +49934,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01804c" sboTerm="SBO:0000247" id="MAM01804c" name="FAICAR" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C10H13N4O9P">
+      <species metaid="M_MAM01804c" sboTerm="SBO:0000247" id="M_MAM01804c" name="FAICAR" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C10H13N4O9P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01804c">
+            <rdf:Description rdf:about="#M_MAM01804c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/fprica"/>
@@ -49916,10 +49952,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01806c" sboTerm="SBO:0000247" id="MAM01806c" name="farnesyl-PP" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C15H25O7P2">
+      <species metaid="M_MAM01806c" sboTerm="SBO:0000247" id="M_MAM01806c" name="farnesyl-PP" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C15H25O7P2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01806c">
+            <rdf:Description rdf:about="#M_MAM01806c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/frdp"/>
@@ -49936,10 +49972,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01807e" sboTerm="SBO:0000247" id="MAM01807e" name="fatty acid-chylomicron pool" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="CHO2R">
+      <species metaid="M_MAM01807e" sboTerm="SBO:0000247" id="M_MAM01807e" name="fatty acid-chylomicron pool" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="CHO2R">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01807e">
+            <rdf:Description rdf:about="#M_MAM01807e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M01807"/>
@@ -49949,10 +49985,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01808c" sboTerm="SBO:0000247" id="MAM01808c" name="fatty acid-LD-PC pool (liver tissue)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="CO2R">
+      <species metaid="M_MAM01808c" sboTerm="SBO:0000247" id="M_MAM01808c" name="fatty acid-LD-PC pool (liver tissue)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="CO2R">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01808c">
+            <rdf:Description rdf:about="#M_MAM01808c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:35366"/>
@@ -49965,10 +50001,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01808r" sboTerm="SBO:0000247" id="MAM01808r" name="fatty acid-LD-PC pool (liver tissue)" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="CO2R">
+      <species metaid="M_MAM01808r" sboTerm="SBO:0000247" id="M_MAM01808r" name="fatty acid-LD-PC pool (liver tissue)" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="CO2R">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01808r">
+            <rdf:Description rdf:about="#M_MAM01808r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:35366"/>
@@ -49981,10 +50017,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01809c" sboTerm="SBO:0000247" id="MAM01809c" name="fatty acid-LD-PE pool (liver tissue)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="CO2R">
+      <species metaid="M_MAM01809c" sboTerm="SBO:0000247" id="M_MAM01809c" name="fatty acid-LD-PE pool (liver tissue)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="CO2R">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01809c">
+            <rdf:Description rdf:about="#M_MAM01809c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:35366"/>
@@ -49997,10 +50033,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01810c" sboTerm="SBO:0000247" id="MAM01810c" name="fatty acid-LD-PI pool (liver tissue)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="CO2R">
+      <species metaid="M_MAM01810c" sboTerm="SBO:0000247" id="M_MAM01810c" name="fatty acid-LD-PI pool (liver tissue)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="CO2R">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01810c">
+            <rdf:Description rdf:about="#M_MAM01810c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:35366"/>
@@ -50013,10 +50049,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01811c" sboTerm="SBO:0000247" id="MAM01811c" name="fatty acid-LD-PS pool (liver tissue)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="CO2R">
+      <species metaid="M_MAM01811c" sboTerm="SBO:0000247" id="M_MAM01811c" name="fatty acid-LD-PS pool (liver tissue)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="CO2R">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01811c">
+            <rdf:Description rdf:about="#M_MAM01811c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:35366"/>
@@ -50029,10 +50065,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01812c" sboTerm="SBO:0000247" id="MAM01812c" name="fatty acid-LD-SM pool (liver tissue)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="CO2R">
+      <species metaid="M_MAM01812c" sboTerm="SBO:0000247" id="M_MAM01812c" name="fatty acid-LD-SM pool (liver tissue)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="CO2R">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01812c">
+            <rdf:Description rdf:about="#M_MAM01812c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:35366"/>
@@ -50045,10 +50081,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01813c" sboTerm="SBO:0000247" id="MAM01813c" name="fatty acid-LD-TG1 pool (liver tissue)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="CO2R">
+      <species metaid="M_MAM01813c" sboTerm="SBO:0000247" id="M_MAM01813c" name="fatty acid-LD-TG1 pool (liver tissue)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="CO2R">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01813c">
+            <rdf:Description rdf:about="#M_MAM01813c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:35366"/>
@@ -50061,10 +50097,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01814c" sboTerm="SBO:0000247" id="MAM01814c" name="fatty acid-LD-TG2 pool (liver tissue)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="CO2R">
+      <species metaid="M_MAM01814c" sboTerm="SBO:0000247" id="M_MAM01814c" name="fatty acid-LD-TG2 pool (liver tissue)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="CO2R">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01814c">
+            <rdf:Description rdf:about="#M_MAM01814c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:35366"/>
@@ -50077,10 +50113,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01815c" sboTerm="SBO:0000247" id="MAM01815c" name="fatty acid-LD-TG3 pool (liver tissue)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="CO2R">
+      <species metaid="M_MAM01815c" sboTerm="SBO:0000247" id="M_MAM01815c" name="fatty acid-LD-TG3 pool (liver tissue)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="CO2R">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01815c">
+            <rdf:Description rdf:about="#M_MAM01815c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:35366"/>
@@ -50093,10 +50129,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01816n" sboTerm="SBO:0000247" id="MAM01816n" name="fatty acid-ligands" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="R">
+      <species metaid="M_MAM01816n" sboTerm="SBO:0000247" id="M_MAM01816n" name="fatty acid-ligands" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="R">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01816n">
+            <rdf:Description rdf:about="#M_MAM01816n">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/PROTEIN"/>
@@ -50107,10 +50143,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01819e" sboTerm="SBO:0000247" id="MAM01819e" name="fatty acid-uptake pool" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="CHO2R">
+      <species metaid="M_MAM01819e" sboTerm="SBO:0000247" id="M_MAM01819e" name="fatty acid-uptake pool" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="CHO2R">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01819e">
+            <rdf:Description rdf:about="#M_MAM01819e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:35366"/>
@@ -50123,10 +50159,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01820e" sboTerm="SBO:0000247" id="MAM01820e" name="fatty acid-VLDL pool" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="CHO2R">
+      <species metaid="M_MAM01820e" sboTerm="SBO:0000247" id="M_MAM01820e" name="fatty acid-VLDL pool" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="CHO2R">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01820e">
+            <rdf:Description rdf:about="#M_MAM01820e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:35366"/>
@@ -50139,10 +50175,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01821c" sboTerm="SBO:0000247" id="MAM01821c" name="Fe2+" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="Fe">
+      <species metaid="M_MAM01821c" sboTerm="SBO:0000247" id="M_MAM01821c" name="Fe2+" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="Fe">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01821c">
+            <rdf:Description rdf:about="#M_MAM01821c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/fe2"/>
@@ -50158,10 +50194,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01821m" sboTerm="SBO:0000247" id="MAM01821m" name="Fe2+" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="Fe">
+      <species metaid="M_MAM01821m" sboTerm="SBO:0000247" id="M_MAM01821m" name="Fe2+" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="Fe">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01821m">
+            <rdf:Description rdf:about="#M_MAM01821m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/fe2"/>
@@ -50177,10 +50213,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01821e" sboTerm="SBO:0000247" id="MAM01821e" name="Fe2+" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="Fe">
+      <species metaid="M_MAM01821e" sboTerm="SBO:0000247" id="M_MAM01821e" name="Fe2+" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="Fe">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01821e">
+            <rdf:Description rdf:about="#M_MAM01821e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/fe2"/>
@@ -50196,10 +50232,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01822c" sboTerm="SBO:0000247" id="MAM01822c" name="Fe3+" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="3" fbc:chemicalFormula="Fe">
+      <species metaid="M_MAM01822c" sboTerm="SBO:0000247" id="M_MAM01822c" name="Fe3+" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="3" fbc:chemicalFormula="Fe">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01822c">
+            <rdf:Description rdf:about="#M_MAM01822c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/fe3"/>
@@ -50214,10 +50250,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01822e" sboTerm="SBO:0000247" id="MAM01822e" name="Fe3+" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="3" fbc:chemicalFormula="Fe">
+      <species metaid="M_MAM01822e" sboTerm="SBO:0000247" id="M_MAM01822e" name="Fe3+" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="3" fbc:chemicalFormula="Fe">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01822e">
+            <rdf:Description rdf:about="#M_MAM01822e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/fe3"/>
@@ -50232,10 +50268,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01823c" sboTerm="SBO:0000247" id="MAM01823c" name="ferricytochrome B5" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="X">
+      <species metaid="M_MAM01823c" sboTerm="SBO:0000247" id="M_MAM01823c" name="ferricytochrome B5" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="X">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01823c">
+            <rdf:Description rdf:about="#M_MAM01823c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:18097"/>
@@ -50248,10 +50284,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01824c" sboTerm="SBO:0000247" id="MAM01824c" name="ferricytochrome C" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="3" fbc:chemicalFormula="C42H54FeN8O6S2">
+      <species metaid="M_MAM01824c" sboTerm="SBO:0000247" id="M_MAM01824c" name="ferricytochrome C" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="3" fbc:chemicalFormula="C42H54FeN8O6S2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01824c">
+            <rdf:Description rdf:about="#M_MAM01824c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ficytC"/>
@@ -50265,10 +50301,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01824m" sboTerm="SBO:0000247" id="MAM01824m" name="ferricytochrome C" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="3" fbc:chemicalFormula="C42H54FeN8O6S2">
+      <species metaid="M_MAM01824m" sboTerm="SBO:0000247" id="M_MAM01824m" name="ferricytochrome C" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="3" fbc:chemicalFormula="C42H54FeN8O6S2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01824m">
+            <rdf:Description rdf:about="#M_MAM01824m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ficytC"/>
@@ -50282,10 +50318,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01825c" sboTerm="SBO:0000247" id="MAM01825c" name="ferrocytochrome B5" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="X">
+      <species metaid="M_MAM01825c" sboTerm="SBO:0000247" id="M_MAM01825c" name="ferrocytochrome B5" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="X">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01825c">
+            <rdf:Description rdf:about="#M_MAM01825c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C00999"/>
@@ -50297,10 +50333,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01826c" sboTerm="SBO:0000247" id="MAM01826c" name="ferrocytochrome C" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="C42H54FeN8O6S2">
+      <species metaid="M_MAM01826c" sboTerm="SBO:0000247" id="M_MAM01826c" name="ferrocytochrome C" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="C42H54FeN8O6S2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01826c">
+            <rdf:Description rdf:about="#M_MAM01826c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/focytC"/>
@@ -50314,10 +50350,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01826m" sboTerm="SBO:0000247" id="MAM01826m" name="ferrocytochrome C" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="C42H54FeN8O6S2">
+      <species metaid="M_MAM01826m" sboTerm="SBO:0000247" id="M_MAM01826m" name="ferrocytochrome C" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="C42H54FeN8O6S2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01826m">
+            <rdf:Description rdf:about="#M_MAM01826m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/focytC"/>
@@ -50331,10 +50367,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01827c" sboTerm="SBO:0000247" id="MAM01827c" name="fibrinogen" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C12932H19804N3662O4205S96">
+      <species metaid="M_MAM01827c" sboTerm="SBO:0000247" id="M_MAM01827c" name="fibrinogen" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C12932H19804N3662O4205S96">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01827c">
+            <rdf:Description rdf:about="#M_MAM01827c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C00393"/>
@@ -50347,10 +50383,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01827l" sboTerm="SBO:0000247" id="MAM01827l" name="fibrinogen" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C12932H19804N3662O4205S96">
+      <species metaid="M_MAM01827l" sboTerm="SBO:0000247" id="M_MAM01827l" name="fibrinogen" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C12932H19804N3662O4205S96">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01827l">
+            <rdf:Description rdf:about="#M_MAM01827l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C00393"/>
@@ -50363,10 +50399,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01827e" sboTerm="SBO:0000247" id="MAM01827e" name="fibrinogen" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C12932H19804N3662O4205S96">
+      <species metaid="M_MAM01827e" sboTerm="SBO:0000247" id="M_MAM01827e" name="fibrinogen" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C12932H19804N3662O4205S96">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01827e">
+            <rdf:Description rdf:about="#M_MAM01827e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C00393"/>
@@ -50379,10 +50415,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01828c" sboTerm="SBO:0000247" id="MAM01828c" name="FMN" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C17H19N4O9P">
+      <species metaid="M_MAM01828c" sboTerm="SBO:0000247" id="M_MAM01828c" name="FMN" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C17H19N4O9P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01828c">
+            <rdf:Description rdf:about="#M_MAM01828c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/fmn"/>
@@ -50398,10 +50434,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01829g" sboTerm="SBO:0000247" id="MAM01829g" name="fn2m2masn" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C56H93N4O39X">
+      <species metaid="M_MAM01829g" sboTerm="SBO:0000247" id="M_MAM01829g" name="fn2m2masn" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C56H93N4O39X">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01829g">
+            <rdf:Description rdf:about="#M_MAM01829g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/fn2m2masn"/>
@@ -50415,10 +50451,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01830c" sboTerm="SBO:0000247" id="MAM01830c" name="folate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C19H18N7O6">
+      <species metaid="M_MAM01830c" sboTerm="SBO:0000247" id="M_MAM01830c" name="folate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C19H18N7O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01830c">
+            <rdf:Description rdf:about="#M_MAM01830c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/fol"/>
@@ -50434,10 +50470,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01830m" sboTerm="SBO:0000247" id="MAM01830m" name="folate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C19H18N7O6">
+      <species metaid="M_MAM01830m" sboTerm="SBO:0000247" id="M_MAM01830m" name="folate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C19H18N7O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01830m">
+            <rdf:Description rdf:about="#M_MAM01830m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/fol"/>
@@ -50453,10 +50489,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01830e" sboTerm="SBO:0000247" id="MAM01830e" name="folate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C19H18N7O6">
+      <species metaid="M_MAM01830e" sboTerm="SBO:0000247" id="M_MAM01830e" name="folate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C19H18N7O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01830e">
+            <rdf:Description rdf:about="#M_MAM01830e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/fol"/>
@@ -50472,10 +50508,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01831c" sboTerm="SBO:0000247" id="MAM01831c" name="formaldehyde" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="CH2O">
+      <species metaid="M_MAM01831c" sboTerm="SBO:0000247" id="M_MAM01831c" name="formaldehyde" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="CH2O">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01831c">
+            <rdf:Description rdf:about="#M_MAM01831c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/fald"/>
@@ -50492,10 +50528,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01831l" sboTerm="SBO:0000247" id="MAM01831l" name="formaldehyde" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="CH2O">
+      <species metaid="M_MAM01831l" sboTerm="SBO:0000247" id="M_MAM01831l" name="formaldehyde" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="CH2O">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01831l">
+            <rdf:Description rdf:about="#M_MAM01831l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/fald"/>
@@ -50512,10 +50548,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01831m" sboTerm="SBO:0000247" id="MAM01831m" name="formaldehyde" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="CH2O">
+      <species metaid="M_MAM01831m" sboTerm="SBO:0000247" id="M_MAM01831m" name="formaldehyde" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="CH2O">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01831m">
+            <rdf:Description rdf:about="#M_MAM01831m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/fald"/>
@@ -50532,10 +50568,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01831x" sboTerm="SBO:0000247" id="MAM01831x" name="formaldehyde" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="CH2O">
+      <species metaid="M_MAM01831x" sboTerm="SBO:0000247" id="M_MAM01831x" name="formaldehyde" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="CH2O">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01831x">
+            <rdf:Description rdf:about="#M_MAM01831x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/fald"/>
@@ -50552,10 +50588,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01832c" sboTerm="SBO:0000247" id="MAM01832c" name="formamidopyrimidine nucleoside triphosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C10H14N5O15P3">
+      <species metaid="M_MAM01832c" sboTerm="SBO:0000247" id="M_MAM01832c" name="formamidopyrimidine nucleoside triphosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C10H14N5O15P3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01832c">
+            <rdf:Description rdf:about="#M_MAM01832c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C05922"/>
@@ -50567,10 +50603,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01832n" sboTerm="SBO:0000247" id="MAM01832n" name="formamidopyrimidine nucleoside triphosphate" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C10H14N5O15P3">
+      <species metaid="M_MAM01832n" sboTerm="SBO:0000247" id="M_MAM01832n" name="formamidopyrimidine nucleoside triphosphate" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C10H14N5O15P3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01832n">
+            <rdf:Description rdf:about="#M_MAM01832n">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C05922"/>
@@ -50582,10 +50618,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01833c" sboTerm="SBO:0000247" id="MAM01833c" name="formate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="CH1O2">
+      <species metaid="M_MAM01833c" sboTerm="SBO:0000247" id="M_MAM01833c" name="formate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="CH1O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01833c">
+            <rdf:Description rdf:about="#M_MAM01833c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/for"/>
@@ -50602,10 +50638,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01833m" sboTerm="SBO:0000247" id="MAM01833m" name="formate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="CH1O2">
+      <species metaid="M_MAM01833m" sboTerm="SBO:0000247" id="M_MAM01833m" name="formate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="CH1O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01833m">
+            <rdf:Description rdf:about="#M_MAM01833m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/for"/>
@@ -50622,10 +50658,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01833n" sboTerm="SBO:0000247" id="MAM01833n" name="formate" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="CH1O2">
+      <species metaid="M_MAM01833n" sboTerm="SBO:0000247" id="M_MAM01833n" name="formate" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="CH1O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01833n">
+            <rdf:Description rdf:about="#M_MAM01833n">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/for"/>
@@ -50642,10 +50678,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01833x" sboTerm="SBO:0000247" id="MAM01833x" name="formate" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="CH1O2">
+      <species metaid="M_MAM01833x" sboTerm="SBO:0000247" id="M_MAM01833x" name="formate" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="CH1O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01833x">
+            <rdf:Description rdf:about="#M_MAM01833x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/for"/>
@@ -50662,10 +50698,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01833r" sboTerm="SBO:0000247" id="MAM01833r" name="formate" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="CH1O2">
+      <species metaid="M_MAM01833r" sboTerm="SBO:0000247" id="M_MAM01833r" name="formate" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="CH1O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01833r">
+            <rdf:Description rdf:about="#M_MAM01833r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/for"/>
@@ -50682,10 +50718,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01833e" sboTerm="SBO:0000247" id="MAM01833e" name="formate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="CH1O2">
+      <species metaid="M_MAM01833e" sboTerm="SBO:0000247" id="M_MAM01833e" name="formate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="CH1O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01833e">
+            <rdf:Description rdf:about="#M_MAM01833e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/for"/>
@@ -50702,10 +50738,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01836c" sboTerm="SBO:0000247" id="MAM01836c" name="formyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C22H32N7O17P3S">
+      <species metaid="M_MAM01836c" sboTerm="SBO:0000247" id="M_MAM01836c" name="formyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C22H32N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01836c">
+            <rdf:Description rdf:about="#M_MAM01836c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/forcoa"/>
@@ -50721,10 +50757,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01836x" sboTerm="SBO:0000247" id="MAM01836x" name="formyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C22H32N7O17P3S">
+      <species metaid="M_MAM01836x" sboTerm="SBO:0000247" id="M_MAM01836x" name="formyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C22H32N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01836x">
+            <rdf:Description rdf:about="#M_MAM01836x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/forcoa"/>
@@ -50740,10 +50776,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01837c" sboTerm="SBO:0000247" id="MAM01837c" name="formylglutathione" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C11H16N3O7S">
+      <species metaid="M_MAM01837c" sboTerm="SBO:0000247" id="M_MAM01837c" name="formylglutathione" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C11H16N3O7S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01837c">
+            <rdf:Description rdf:about="#M_MAM01837c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/Sfglutth"/>
@@ -50758,10 +50794,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01838c" sboTerm="SBO:0000247" id="MAM01838c" name="formyl-L-methionyl-peptide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C12H17N4O6SR3">
+      <species metaid="M_MAM01838c" sboTerm="SBO:0000247" id="M_MAM01838c" name="formyl-L-methionyl-peptide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C12H17N4O6SR3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01838c">
+            <rdf:Description rdf:about="#M_MAM01838c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C11439"/>
@@ -50773,10 +50809,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01839c" sboTerm="SBO:0000247" id="MAM01839c" name="formyl-N-acetyl-5-methoxykynurenamine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C13H16N2O4">
+      <species metaid="M_MAM01839c" sboTerm="SBO:0000247" id="M_MAM01839c" name="formyl-N-acetyl-5-methoxykynurenamine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C13H16N2O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01839c">
+            <rdf:Description rdf:about="#M_MAM01839c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/fna5moxam"/>
@@ -50793,10 +50829,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01840c" sboTerm="SBO:0000247" id="MAM01840c" name="fructose" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H12O6">
+      <species metaid="M_MAM01840c" sboTerm="SBO:0000247" id="M_MAM01840c" name="fructose" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H12O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01840c">
+            <rdf:Description rdf:about="#M_MAM01840c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/fru"/>
@@ -50812,10 +50848,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01840e" sboTerm="SBO:0000247" id="MAM01840e" name="fructose" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H12O6">
+      <species metaid="M_MAM01840e" sboTerm="SBO:0000247" id="M_MAM01840e" name="fructose" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H12O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01840e">
+            <rdf:Description rdf:about="#M_MAM01840e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/fru"/>
@@ -50831,10 +50867,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01841c" sboTerm="SBO:0000247" id="MAM01841c" name="fructose-1,6-bisphosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C6H10O12P2">
+      <species metaid="M_MAM01841c" sboTerm="SBO:0000247" id="M_MAM01841c" name="fructose-1,6-bisphosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C6H10O12P2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01841c">
+            <rdf:Description rdf:about="#M_MAM01841c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/fdp"/>
@@ -50849,10 +50885,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01842c" sboTerm="SBO:0000247" id="MAM01842c" name="fructose-1-phosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H11O9P">
+      <species metaid="M_MAM01842c" sboTerm="SBO:0000247" id="M_MAM01842c" name="fructose-1-phosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H11O9P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01842c">
+            <rdf:Description rdf:about="#M_MAM01842c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/f1p"/>
@@ -50867,10 +50903,10 @@
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+      <species metaid="M_MAM01843c" sboTerm="SBO:0000247" id="M_MAM01843c" name="fructose-2,6-bisphosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C6H10O12P2">
         <annotation>
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-            <rdf:Description rdf:about="#MAM01843c">
+            <rdf:Description rdf:about="#M_MAM01843c">
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                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/f26bp"/>
@@ -50885,10 +50921,10 @@
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-      <species metaid="MAM01844c" sboTerm="SBO:0000247" id="MAM01844c" name="fructose-3-phosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H11O9P">
+      <species metaid="M_MAM01844c" sboTerm="SBO:0000247" id="M_MAM01844c" name="fructose-3-phosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H11O9P">
         <annotation>
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-            <rdf:Description rdf:about="#MAM01844c">
+            <rdf:Description rdf:about="#M_MAM01844c">
               <bqbiol:is>
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                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/CE3074"/>
@@ -50898,10 +50934,10 @@
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+      <species metaid="M_MAM01845c" sboTerm="SBO:0000247" id="M_MAM01845c" name="fructose-6-phosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H11O9P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01845c">
+            <rdf:Description rdf:about="#M_MAM01845c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/f6p"/>
@@ -50917,10 +50953,10 @@
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-      <species metaid="MAM01846c" sboTerm="SBO:0000247" id="MAM01846c" name="fructoseglycine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H15NO7">
+      <species metaid="M_MAM01846c" sboTerm="SBO:0000247" id="M_MAM01846c" name="fructoseglycine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H15NO7">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01846c">
+            <rdf:Description rdf:about="#M_MAM01846c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:24108"/>
@@ -50933,10 +50969,10 @@
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-      <species metaid="MAM01847c" sboTerm="SBO:0000247" id="MAM01847c" name="fructoseglycine-ketone-3-phosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C8H14NO10P">
+      <species metaid="M_MAM01847c" sboTerm="SBO:0000247" id="M_MAM01847c" name="fructoseglycine-ketone-3-phosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C8H14NO10P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01847c">
+            <rdf:Description rdf:about="#M_MAM01847c">
               <bqbiol:is>
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                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM167747"/>
@@ -50947,10 +50983,10 @@
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-      <species metaid="MAM01848c" sboTerm="SBO:0000247" id="MAM01848c" name="fructoselysine-3-phosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C12H24N2O10P">
+      <species metaid="M_MAM01848c" sboTerm="SBO:0000247" id="M_MAM01848c" name="fructoselysine-3-phosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C12H24N2O10P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01848c">
+            <rdf:Description rdf:about="#M_MAM01848c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM167748"/>
@@ -50961,10 +50997,10 @@
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-      <species metaid="MAM01849c" sboTerm="SBO:0000247" id="MAM01849c" name="fuc-3-isoLM1" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C62H106N3O35R">
+      <species metaid="M_MAM01849c" sboTerm="SBO:0000247" id="M_MAM01849c" name="fuc-3-isoLM1" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C62H106N3O35R">
         <annotation>
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-            <rdf:Description rdf:about="#MAM01849c">
+            <rdf:Description rdf:about="#M_MAM01849c">
               <bqbiol:is>
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                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/G00048"/>
@@ -50976,10 +51012,10 @@
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-      <species metaid="MAM01850c" sboTerm="SBO:0000247" id="MAM01850c" name="fucacgalfucgalacglcgalgluside heparan sulfate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C64H112N3O35RCO">
+      <species metaid="M_MAM01850c" sboTerm="SBO:0000247" id="M_MAM01850c" name="fucacgalfucgalacglcgalgluside heparan sulfate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C64H112N3O35RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01850c">
+            <rdf:Description rdf:about="#M_MAM01850c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/fucacgalfucgalacglcgalgluside_hs"/>
@@ -50992,10 +51028,10 @@
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-      <species metaid="MAM01850g" sboTerm="SBO:0000247" id="MAM01850g" name="fucacgalfucgalacglcgalgluside heparan sulfate" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C64H112N3O35RCO">
+      <species metaid="M_MAM01850g" sboTerm="SBO:0000247" id="M_MAM01850g" name="fucacgalfucgalacglcgalgluside heparan sulfate" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C64H112N3O35RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01850g">
+            <rdf:Description rdf:about="#M_MAM01850g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/fucacgalfucgalacglcgalgluside_hs"/>
@@ -51008,10 +51044,10 @@
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         </annotation>
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-      <species metaid="MAM01850e" sboTerm="SBO:0000247" id="MAM01850e" name="fucacgalfucgalacglcgalgluside heparan sulfate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C64H112N3O35RCO">
+      <species metaid="M_MAM01850e" sboTerm="SBO:0000247" id="M_MAM01850e" name="fucacgalfucgalacglcgalgluside heparan sulfate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C64H112N3O35RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01850e">
+            <rdf:Description rdf:about="#M_MAM01850e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/fucacgalfucgalacglcgalgluside_hs"/>
@@ -51024,10 +51060,10 @@
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         </annotation>
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-      <species metaid="MAM01851c" sboTerm="SBO:0000247" id="MAM01851c" name="fucfuc132galacglcgal14acglcgalgluside heparan sulfate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C70H122N3O40RCO">
+      <species metaid="M_MAM01851c" sboTerm="SBO:0000247" id="M_MAM01851c" name="fucfuc132galacglcgal14acglcgalgluside heparan sulfate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C70H122N3O40RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01851c">
+            <rdf:Description rdf:about="#M_MAM01851c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/fucfuc132galacglcgal14acglcgalgluside_hs"/>
@@ -51039,10 +51075,10 @@
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         </annotation>
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-      <species metaid="MAM01851g" sboTerm="SBO:0000247" id="MAM01851g" name="fucfuc132galacglcgal14acglcgalgluside heparan sulfate" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C70H122N3O40RCO">
+      <species metaid="M_MAM01851g" sboTerm="SBO:0000247" id="M_MAM01851g" name="fucfuc132galacglcgal14acglcgalgluside heparan sulfate" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C70H122N3O40RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01851g">
+            <rdf:Description rdf:about="#M_MAM01851g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/fucfuc132galacglcgal14acglcgalgluside_hs"/>
@@ -51054,10 +51090,10 @@
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-      <species metaid="MAM01851e" sboTerm="SBO:0000247" id="MAM01851e" name="fucfuc132galacglcgal14acglcgalgluside heparan sulfate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C70H122N3O40RCO">
+      <species metaid="M_MAM01851e" sboTerm="SBO:0000247" id="M_MAM01851e" name="fucfuc132galacglcgal14acglcgalgluside heparan sulfate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C70H122N3O40RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01851e">
+            <rdf:Description rdf:about="#M_MAM01851e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/fucfuc132galacglcgal14acglcgalgluside_hs"/>
@@ -51069,10 +51105,10 @@
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-      <species metaid="MAM01852c" sboTerm="SBO:0000247" id="MAM01852c" name="fucfucfucgalacglc13galacglcgal14acglcgalgluside heparan sulfate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C90H155N4O54RCO">
+      <species metaid="M_MAM01852c" sboTerm="SBO:0000247" id="M_MAM01852c" name="fucfucfucgalacglc13galacglcgal14acglcgalgluside heparan sulfate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C90H155N4O54RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01852c">
+            <rdf:Description rdf:about="#M_MAM01852c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/fucfucfucgalacglc13galacglcgal14acglcgalgluside_hs"/>
@@ -51084,10 +51120,10 @@
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-      <species metaid="MAM01852g" sboTerm="SBO:0000247" id="MAM01852g" name="fucfucfucgalacglc13galacglcgal14acglcgalgluside heparan sulfate" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C90H155N4O54RCO">
+      <species metaid="M_MAM01852g" sboTerm="SBO:0000247" id="M_MAM01852g" name="fucfucfucgalacglc13galacglcgal14acglcgalgluside heparan sulfate" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C90H155N4O54RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01852g">
+            <rdf:Description rdf:about="#M_MAM01852g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/fucfucfucgalacglc13galacglcgal14acglcgalgluside_hs"/>
@@ -51099,10 +51135,10 @@
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-      <species metaid="MAM01852e" sboTerm="SBO:0000247" id="MAM01852e" name="fucfucfucgalacglc13galacglcgal14acglcgalgluside heparan sulfate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C90H155N4O54RCO">
+      <species metaid="M_MAM01852e" sboTerm="SBO:0000247" id="M_MAM01852e" name="fucfucfucgalacglc13galacglcgal14acglcgalgluside heparan sulfate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C90H155N4O54RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01852e">
+            <rdf:Description rdf:about="#M_MAM01852e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/fucfucfucgalacglc13galacglcgal14acglcgalgluside_hs"/>
@@ -51114,10 +51150,10 @@
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-      <species metaid="MAM01853c" sboTerm="SBO:0000247" id="MAM01853c" name="fucfucfucgalacglcgal14acglcgalgluside heparan sulfate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C76H132N3O44RCO">
+      <species metaid="M_MAM01853c" sboTerm="SBO:0000247" id="M_MAM01853c" name="fucfucfucgalacglcgal14acglcgalgluside heparan sulfate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C76H132N3O44RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01853c">
+            <rdf:Description rdf:about="#M_MAM01853c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/fucfucfucgalacglcgal14acglcgalgluside_hs"/>
@@ -51129,10 +51165,10 @@
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-      <species metaid="MAM01853g" sboTerm="SBO:0000247" id="MAM01853g" name="fucfucfucgalacglcgal14acglcgalgluside heparan sulfate" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C76H132N3O44RCO">
+      <species metaid="M_MAM01853g" sboTerm="SBO:0000247" id="M_MAM01853g" name="fucfucfucgalacglcgal14acglcgalgluside heparan sulfate" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C76H132N3O44RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01853g">
+            <rdf:Description rdf:about="#M_MAM01853g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/fucfucfucgalacglcgal14acglcgalgluside_hs"/>
@@ -51144,10 +51180,10 @@
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         </annotation>
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-      <species metaid="MAM01853e" sboTerm="SBO:0000247" id="MAM01853e" name="fucfucfucgalacglcgal14acglcgalgluside heparan sulfate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C76H132N3O44RCO">
+      <species metaid="M_MAM01853e" sboTerm="SBO:0000247" id="M_MAM01853e" name="fucfucfucgalacglcgal14acglcgalgluside heparan sulfate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C76H132N3O44RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01853e">
+            <rdf:Description rdf:about="#M_MAM01853e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/fucfucfucgalacglcgal14acglcgalgluside_hs"/>
@@ -51159,10 +51195,10 @@
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         </annotation>
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-      <species metaid="MAM01854g" sboTerm="SBO:0000247" id="MAM01854g" name="fucfucgalacglc13galacglcgal14acglcgalgluside heparan sulfate" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C84H145N4O50RCO">
+      <species metaid="M_MAM01854g" sboTerm="SBO:0000247" id="M_MAM01854g" name="fucfucgalacglc13galacglcgal14acglcgalgluside heparan sulfate" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C84H145N4O50RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01854g">
+            <rdf:Description rdf:about="#M_MAM01854g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/fucfucgalacglc13galacglcgal14acglcgalgluside_hs"/>
@@ -51174,10 +51210,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM01855g" sboTerm="SBO:0000247" id="MAM01855g" name="fucfucgalacglcgal14acglcgalgluside heparan sulfate" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C70H122N3O40RCO">
+      <species metaid="M_MAM01855g" sboTerm="SBO:0000247" id="M_MAM01855g" name="fucfucgalacglcgal14acglcgalgluside heparan sulfate" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C70H122N3O40RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01855g">
+            <rdf:Description rdf:about="#M_MAM01855g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/fucfucgalacglcgal14acglcgalgluside_hs"/>
@@ -51189,10 +51225,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM01858g" sboTerm="SBO:0000247" id="MAM01858g" name="fucgalacglc13galacglcgal14acglcgalgluside heparan sulfate" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C78H135N4O46RCO">
+      <species metaid="M_MAM01858g" sboTerm="SBO:0000247" id="M_MAM01858g" name="fucgalacglc13galacglcgal14acglcgalgluside heparan sulfate" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C78H135N4O46RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01858g">
+            <rdf:Description rdf:about="#M_MAM01858g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/fucgalacglc13galacglcgal14acglcgalgluside_hs"/>
@@ -51204,10 +51240,10 @@
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         </annotation>
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-      <species metaid="MAM01859c" sboTerm="SBO:0000247" id="MAM01859c" name="fucgalfucgalacglcgalgluside heparan sulfate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C62H109N2O35RCO">
+      <species metaid="M_MAM01859c" sboTerm="SBO:0000247" id="M_MAM01859c" name="fucgalfucgalacglcgalgluside heparan sulfate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C62H109N2O35RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01859c">
+            <rdf:Description rdf:about="#M_MAM01859c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/fucgalfucgalacglcgalgluside_hs"/>
@@ -51219,10 +51255,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM01859g" sboTerm="SBO:0000247" id="MAM01859g" name="fucgalfucgalacglcgalgluside heparan sulfate" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C62H109N2O35RCO">
+      <species metaid="M_MAM01859g" sboTerm="SBO:0000247" id="M_MAM01859g" name="fucgalfucgalacglcgalgluside heparan sulfate" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C62H109N2O35RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01859g">
+            <rdf:Description rdf:about="#M_MAM01859g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/fucgalfucgalacglcgalgluside_hs"/>
@@ -51234,10 +51270,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01859e" sboTerm="SBO:0000247" id="MAM01859e" name="fucgalfucgalacglcgalgluside heparan sulfate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C62H109N2O35RCO">
+      <species metaid="M_MAM01859e" sboTerm="SBO:0000247" id="M_MAM01859e" name="fucgalfucgalacglcgalgluside heparan sulfate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C62H109N2O35RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01859e">
+            <rdf:Description rdf:about="#M_MAM01859e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/fucgalfucgalacglcgalgluside_hs"/>
@@ -51249,10 +51285,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01860c" sboTerm="SBO:0000247" id="MAM01860c" name="fuc-Lc4Cer" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C50H89N2O26RCO">
+      <species metaid="M_MAM01860c" sboTerm="SBO:0000247" id="M_MAM01860c" name="fuc-Lc4Cer" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C50H89N2O26RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01860c">
+            <rdf:Description rdf:about="#M_MAM01860c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/G00046"/>
@@ -51264,10 +51300,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01861c" sboTerm="SBO:0000247" id="MAM01861c" name="fucosyl-galactosylgloboside" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C56H99N2O31RCO">
+      <species metaid="M_MAM01861c" sboTerm="SBO:0000247" id="M_MAM01861c" name="fucosyl-galactosylgloboside" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C56H99N2O31RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01861c">
+            <rdf:Description rdf:about="#M_MAM01861c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/fucgalgbside_hs"/>
@@ -51279,10 +51315,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01861g" sboTerm="SBO:0000247" id="MAM01861g" name="fucosyl-galactosylgloboside" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C56H99N2O31RCO">
+      <species metaid="M_MAM01861g" sboTerm="SBO:0000247" id="M_MAM01861g" name="fucosyl-galactosylgloboside" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C56H99N2O31RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01861g">
+            <rdf:Description rdf:about="#M_MAM01861g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/fucgalgbside_hs"/>
@@ -51294,10 +51330,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01861e" sboTerm="SBO:0000247" id="MAM01861e" name="fucosyl-galactosylgloboside" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C56H99N2O31RCO">
+      <species metaid="M_MAM01861e" sboTerm="SBO:0000247" id="M_MAM01861e" name="fucosyl-galactosylgloboside" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C56H99N2O31RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01861e">
+            <rdf:Description rdf:about="#M_MAM01861e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/fucgalgbside_hs"/>
@@ -51309,10 +51345,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM01862c" sboTerm="SBO:0000247" id="MAM01862c" name="fumarate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C4H2O4">
+      <species metaid="M_MAM01862c" sboTerm="SBO:0000247" id="M_MAM01862c" name="fumarate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C4H2O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01862c">
+            <rdf:Description rdf:about="#M_MAM01862c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/fum"/>
@@ -51328,10 +51364,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM01862m" sboTerm="SBO:0000247" id="MAM01862m" name="fumarate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C4H2O4">
+      <species metaid="M_MAM01862m" sboTerm="SBO:0000247" id="M_MAM01862m" name="fumarate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C4H2O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01862m">
+            <rdf:Description rdf:about="#M_MAM01862m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/fum"/>
@@ -51347,10 +51383,10 @@
           </rdf:RDF>
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-      <species metaid="MAM01863c" sboTerm="SBO:0000247" id="MAM01863c" name="fumarylacetoacetate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C8H6O6">
+      <species metaid="M_MAM01863c" sboTerm="SBO:0000247" id="M_MAM01863c" name="fumarylacetoacetate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C8H6O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01863c">
+            <rdf:Description rdf:about="#M_MAM01863c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/4fumacac"/>
@@ -51366,10 +51402,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01864c" sboTerm="SBO:0000247" id="MAM01864c" name="G(5)pppR-RNA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C25H34N5O29P5R3">
+      <species metaid="M_MAM01864c" sboTerm="SBO:0000247" id="M_MAM01864c" name="G(5)pppR-RNA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C25H34N5O29P5R3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01864c">
+            <rdf:Description rdf:about="#M_MAM01864c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C02031"/>
@@ -51381,10 +51417,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01865c" sboTerm="SBO:0000247" id="MAM01865c" name="G00005" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C134H220N2O32P2">
+      <species metaid="M_MAM01865c" sboTerm="SBO:0000247" id="M_MAM01865c" name="G00005" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C134H220N2O32P2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01865c">
+            <rdf:Description rdf:about="#M_MAM01865c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/m2mpdol"/>
@@ -51397,10 +51433,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01866c" sboTerm="SBO:0000247" id="MAM01866c" name="G00006" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C146H240N2O42P2">
+      <species metaid="M_MAM01866c" sboTerm="SBO:0000247" id="M_MAM01866c" name="G00006" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C146H240N2O42P2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01866c">
+            <rdf:Description rdf:about="#M_MAM01866c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/m4mpdol__L"/>
@@ -51414,10 +51450,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01866r" sboTerm="SBO:0000247" id="MAM01866r" name="G00006" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C146H240N2O42P2">
+      <species metaid="M_MAM01866r" sboTerm="SBO:0000247" id="M_MAM01866r" name="G00006" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C146H240N2O42P2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01866r">
+            <rdf:Description rdf:about="#M_MAM01866r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/m4mpdol__L"/>
@@ -51431,10 +51467,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01867r" sboTerm="SBO:0000247" id="MAM01867r" name="G00007" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C170H280N2O62P2">
+      <species metaid="M_MAM01867r" sboTerm="SBO:0000247" id="M_MAM01867r" name="G00007" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C170H280N2O62P2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01867r">
+            <rdf:Description rdf:about="#M_MAM01867r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/m8mpdol"/>
@@ -51447,10 +51483,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01868g" sboTerm="SBO:0000247" id="MAM01868g" name="G00020" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C58H96N5O40X">
+      <species metaid="M_MAM01868g" sboTerm="SBO:0000247" id="M_MAM01868g" name="G00020" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C58H96N5O40X">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01868g">
+            <rdf:Description rdf:about="#M_MAM01868g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/G00020"/>
@@ -51461,10 +51497,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01870g" sboTerm="SBO:0000247" id="MAM01870g" name="G00022" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C74H122N7O50X">
+      <species metaid="M_MAM01870g" sboTerm="SBO:0000247" id="M_MAM01870g" name="G00022" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C74H122N7O50X">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01870g">
+            <rdf:Description rdf:about="#M_MAM01870g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/G00022"/>
@@ -51476,10 +51512,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01870e" sboTerm="SBO:0000247" id="MAM01870e" name="G00022" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C74H122N7O50X">
+      <species metaid="M_MAM01870e" sboTerm="SBO:0000247" id="M_MAM01870e" name="G00022" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C74H122N7O50X">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01870e">
+            <rdf:Description rdf:about="#M_MAM01870e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/G00022"/>
@@ -51491,10 +51527,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01871g" sboTerm="SBO:0000247" id="MAM01871g" name="G00031" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C16H27N2O10X">
+      <species metaid="M_MAM01871g" sboTerm="SBO:0000247" id="M_MAM01871g" name="G00031" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C16H27N2O10X">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01871g">
+            <rdf:Description rdf:about="#M_MAM01871g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/G00031"/>
@@ -51506,10 +51542,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01872g" sboTerm="SBO:0000247" id="MAM01872g" name="G00032" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C22H37N2O15X">
+      <species metaid="M_MAM01872g" sboTerm="SBO:0000247" id="M_MAM01872g" name="G00032" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C22H37N2O15X">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01872g">
+            <rdf:Description rdf:about="#M_MAM01872g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/G00032"/>
@@ -51521,10 +51557,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01872e" sboTerm="SBO:0000247" id="MAM01872e" name="G00032" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C22H37N2O15X">
+      <species metaid="M_MAM01872e" sboTerm="SBO:0000247" id="M_MAM01872e" name="G00032" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C22H37N2O15X">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01872e">
+            <rdf:Description rdf:about="#M_MAM01872e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/G00032"/>
@@ -51536,10 +51572,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01874c" sboTerm="SBO:0000247" id="MAM01874c" name="G00040" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C62H109N2O35RCO">
+      <species metaid="M_MAM01874c" sboTerm="SBO:0000247" id="M_MAM01874c" name="G00040" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C62H109N2O35RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01874c">
+            <rdf:Description rdf:about="#M_MAM01874c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/G00040"/>
@@ -51551,10 +51587,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01874e" sboTerm="SBO:0000247" id="MAM01874e" name="G00040" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C62H109N2O35RCO">
+      <species metaid="M_MAM01874e" sboTerm="SBO:0000247" id="M_MAM01874e" name="G00040" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C62H109N2O35RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01874e">
+            <rdf:Description rdf:about="#M_MAM01874e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/G00040"/>
@@ -51566,10 +51602,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01876c" sboTerm="SBO:0000247" id="MAM01876c" name="G00057" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C64H112N3O36RCO">
+      <species metaid="M_MAM01876c" sboTerm="SBO:0000247" id="M_MAM01876c" name="G00057" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C64H112N3O36RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01876c">
+            <rdf:Description rdf:about="#M_MAM01876c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/G00057"/>
@@ -51581,10 +51617,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01877c" sboTerm="SBO:0000247" id="MAM01877c" name="G00072" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C72H125N4O41RCO">
+      <species metaid="M_MAM01877c" sboTerm="SBO:0000247" id="M_MAM01877c" name="G00072" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C72H125N4O41RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01877c">
+            <rdf:Description rdf:about="#M_MAM01877c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/G00072"/>
@@ -51596,10 +51632,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01878c" sboTerm="SBO:0000247" id="MAM01878c" name="G00073" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C78H135N4O46RCO">
+      <species metaid="M_MAM01878c" sboTerm="SBO:0000247" id="M_MAM01878c" name="G00073" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C78H135N4O46RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01878c">
+            <rdf:Description rdf:about="#M_MAM01878c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/G00073"/>
@@ -51611,10 +51647,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01880c" sboTerm="SBO:0000247" id="MAM01880c" name="G00077" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C66H115N4O37RCO">
+      <species metaid="M_MAM01880c" sboTerm="SBO:0000247" id="M_MAM01880c" name="G00077" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C66H115N4O37RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01880c">
+            <rdf:Description rdf:about="#M_MAM01880c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/acglcgalacglcgal14acglcgalgluside_hs"/>
@@ -51627,10 +51663,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01880g" sboTerm="SBO:0000247" id="MAM01880g" name="G00077" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C66H115N4O37RCO">
+      <species metaid="M_MAM01880g" sboTerm="SBO:0000247" id="M_MAM01880g" name="G00077" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C66H115N4O37RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01880g">
+            <rdf:Description rdf:about="#M_MAM01880g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/acglcgalacglcgal14acglcgalgluside_hs"/>
@@ -51643,10 +51679,10 @@
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-      <species metaid="MAM01881c" sboTerm="SBO:0000247" id="MAM01881c" name="G00079" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C85H145N4O51R">
+      <species metaid="M_MAM01881c" sboTerm="SBO:0000247" id="M_MAM01881c" name="G00079" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C85H145N4O51R">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01881c">
+            <rdf:Description rdf:about="#M_MAM01881c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/G00079"/>
@@ -51658,10 +51694,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM01881e" sboTerm="SBO:0000247" id="MAM01881e" name="G00079" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C85H145N4O51R">
+      <species metaid="M_MAM01881e" sboTerm="SBO:0000247" id="M_MAM01881e" name="G00079" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C85H145N4O51R">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01881e">
+            <rdf:Description rdf:about="#M_MAM01881e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/G00079"/>
@@ -51673,10 +51709,10 @@
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         </annotation>
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-      <species metaid="MAM01882c" sboTerm="SBO:0000247" id="MAM01882c" name="G00081" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C70H122N3O40RCO">
+      <species metaid="M_MAM01882c" sboTerm="SBO:0000247" id="M_MAM01882c" name="G00081" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C70H122N3O40RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01882c">
+            <rdf:Description rdf:about="#M_MAM01882c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/G00081"/>
@@ -51688,10 +51724,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM01883c" sboTerm="SBO:0000247" id="MAM01883c" name="G00082" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C76H132N3O44RCO">
+      <species metaid="M_MAM01883c" sboTerm="SBO:0000247" id="M_MAM01883c" name="G00082" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C76H132N3O44RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01883c">
+            <rdf:Description rdf:about="#M_MAM01883c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/G00082"/>
@@ -51703,10 +51739,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01883e" sboTerm="SBO:0000247" id="MAM01883e" name="G00082" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C76H132N3O44RCO">
+      <species metaid="M_MAM01883e" sboTerm="SBO:0000247" id="M_MAM01883e" name="G00082" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C76H132N3O44RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01883e">
+            <rdf:Description rdf:about="#M_MAM01883e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/G00082"/>
@@ -51718,10 +51754,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01884c" sboTerm="SBO:0000247" id="MAM01884c" name="G00083" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C70H122N3O41RCO">
+      <species metaid="M_MAM01884c" sboTerm="SBO:0000247" id="M_MAM01884c" name="G00083" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C70H122N3O41RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01884c">
+            <rdf:Description rdf:about="#M_MAM01884c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/G00083"/>
@@ -51733,10 +51769,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01884e" sboTerm="SBO:0000247" id="MAM01884e" name="G00083" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C70H122N3O41RCO">
+      <species metaid="M_MAM01884e" sboTerm="SBO:0000247" id="M_MAM01884e" name="G00083" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C70H122N3O41RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01884e">
+            <rdf:Description rdf:about="#M_MAM01884e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/G00083"/>
@@ -51748,10 +51784,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01885c" sboTerm="SBO:0000247" id="MAM01885c" name="G00084" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C78H135N4O46RCO">
+      <species metaid="M_MAM01885c" sboTerm="SBO:0000247" id="M_MAM01885c" name="G00084" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C78H135N4O46RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01885c">
+            <rdf:Description rdf:about="#M_MAM01885c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/G00084"/>
@@ -51763,10 +51799,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01886c" sboTerm="SBO:0000247" id="MAM01886c" name="G00085" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C84H145N4O50RCO">
+      <species metaid="M_MAM01886c" sboTerm="SBO:0000247" id="M_MAM01886c" name="G00085" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C84H145N4O50RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01886c">
+            <rdf:Description rdf:about="#M_MAM01886c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/G00085"/>
@@ -51778,10 +51814,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01887c" sboTerm="SBO:0000247" id="MAM01887c" name="G00086" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C90H155N4O54RCO">
+      <species metaid="M_MAM01887c" sboTerm="SBO:0000247" id="M_MAM01887c" name="G00086" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C90H155N4O54RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01887c">
+            <rdf:Description rdf:about="#M_MAM01887c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/G00086"/>
@@ -51793,10 +51829,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01887e" sboTerm="SBO:0000247" id="MAM01887e" name="G00086" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C90H155N4O54RCO">
+      <species metaid="M_MAM01887e" sboTerm="SBO:0000247" id="M_MAM01887e" name="G00086" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C90H155N4O54RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01887e">
+            <rdf:Description rdf:about="#M_MAM01887e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/G00086"/>
@@ -51808,10 +51844,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM01895c" sboTerm="SBO:0000247" id="MAM01895c" name="G10526" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C140H230N2O37P2">
+      <species metaid="M_MAM01895c" sboTerm="SBO:0000247" id="M_MAM01895c" name="G10526" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C140H230N2O37P2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01895c">
+            <rdf:Description rdf:about="#M_MAM01895c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/m3mpdol"/>
@@ -51824,10 +51860,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01896r" sboTerm="SBO:0000247" id="MAM01896r" name="G10595" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C152H250N2O47P2">
+      <species metaid="M_MAM01896r" sboTerm="SBO:0000247" id="M_MAM01896r" name="G10595" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C152H250N2O47P2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01896r">
+            <rdf:Description rdf:about="#M_MAM01896r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/m5mpdol"/>
@@ -51840,10 +51876,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01897r" sboTerm="SBO:0000247" id="MAM01897r" name="G10596" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C158H260N2O52P2">
+      <species metaid="M_MAM01897r" sboTerm="SBO:0000247" id="M_MAM01897r" name="G10596" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C158H260N2O52P2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01897r">
+            <rdf:Description rdf:about="#M_MAM01897r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/m6mpdol"/>
@@ -51856,10 +51892,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01898r" sboTerm="SBO:0000247" id="MAM01898r" name="G10597" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C164H270N2O57P2">
+      <species metaid="M_MAM01898r" sboTerm="SBO:0000247" id="M_MAM01898r" name="G10597" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C164H270N2O57P2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01898r">
+            <rdf:Description rdf:about="#M_MAM01898r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/m7mpdol"/>
@@ -51872,10 +51908,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01899r" sboTerm="SBO:0000247" id="MAM01899r" name="G10598" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C176H290N2O67P2">
+      <species metaid="M_MAM01899r" sboTerm="SBO:0000247" id="M_MAM01899r" name="G10598" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C176H290N2O67P2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01899r">
+            <rdf:Description rdf:about="#M_MAM01899r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/g1m8mpdol__L"/>
@@ -51888,10 +51924,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01900r" sboTerm="SBO:0000247" id="MAM01900r" name="G10599" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C182H300N2O72P2">
+      <species metaid="M_MAM01900r" sboTerm="SBO:0000247" id="M_MAM01900r" name="G10599" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C182H300N2O72P2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01900r">
+            <rdf:Description rdf:about="#M_MAM01900r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/g2m8mpdol__L"/>
@@ -51904,10 +51940,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01904c" sboTerm="SBO:0000247" id="MAM01904c" name="GA1" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C44H79N2O22RCO">
+      <species metaid="M_MAM01904c" sboTerm="SBO:0000247" id="M_MAM01904c" name="GA1" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C44H79N2O22RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01904c">
+            <rdf:Description rdf:about="#M_MAM01904c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ga1_hs"/>
@@ -51921,10 +51957,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01904g" sboTerm="SBO:0000247" id="MAM01904g" name="GA1" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C44H79N2O22RCO">
+      <species metaid="M_MAM01904g" sboTerm="SBO:0000247" id="M_MAM01904g" name="GA1" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C44H79N2O22RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01904g">
+            <rdf:Description rdf:about="#M_MAM01904g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ga1_hs"/>
@@ -51938,10 +51974,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01905c" sboTerm="SBO:0000247" id="MAM01905c" name="GA2" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C38H69N2O17RCO">
+      <species metaid="M_MAM01905c" sboTerm="SBO:0000247" id="M_MAM01905c" name="GA2" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C38H69N2O17RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01905c">
+            <rdf:Description rdf:about="#M_MAM01905c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ga2_hs"/>
@@ -51955,10 +51991,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01905g" sboTerm="SBO:0000247" id="MAM01905g" name="GA2" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C38H69N2O17RCO">
+      <species metaid="M_MAM01905g" sboTerm="SBO:0000247" id="M_MAM01905g" name="GA2" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C38H69N2O17RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01905g">
+            <rdf:Description rdf:about="#M_MAM01905g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ga2_hs"/>
@@ -51972,10 +52008,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01906g" sboTerm="SBO:0000247" id="MAM01906g" name="Gal2-Xyl-L-Ser-[protein]" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C17H29O14X">
+      <species metaid="M_MAM01906g" sboTerm="SBO:0000247" id="M_MAM01906g" name="Gal2-Xyl-L-Ser-[protein]" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C17H29O14X">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01906g">
+            <rdf:Description rdf:about="#M_MAM01906g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/l2xser"/>
@@ -51989,10 +52025,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01907g" sboTerm="SBO:0000247" id="MAM01907g" name="galacgalfuc12gal14acglcgalgluside heparan sulfate" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C64H112N3O36RCO">
+      <species metaid="M_MAM01907g" sboTerm="SBO:0000247" id="M_MAM01907g" name="galacgalfuc12gal14acglcgalgluside heparan sulfate" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C64H112N3O36RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01907g">
+            <rdf:Description rdf:about="#M_MAM01907g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/galacgalfuc12gal14acglcgalgluside_hs"/>
@@ -52004,10 +52040,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01908g" sboTerm="SBO:0000247" id="MAM01908g" name="galacgalfucgalacglcgal14acglcgalgluside heparan sulfate" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C78H135N4O46RCO">
+      <species metaid="M_MAM01908g" sboTerm="SBO:0000247" id="M_MAM01908g" name="galacgalfucgalacglcgal14acglcgalgluside heparan sulfate" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C78H135N4O46RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01908g">
+            <rdf:Description rdf:about="#M_MAM01908g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/galacgalfucgalacglcgal14acglcgalgluside_hs"/>
@@ -52019,10 +52055,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01909c" sboTerm="SBO:0000247" id="MAM01909c" name="galactitol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H14O6">
+      <species metaid="M_MAM01909c" sboTerm="SBO:0000247" id="M_MAM01909c" name="galactitol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H14O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01909c">
+            <rdf:Description rdf:about="#M_MAM01909c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/galt"/>
@@ -52039,10 +52075,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01910c" sboTerm="SBO:0000247" id="MAM01910c" name="galactose" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H12O6">
+      <species metaid="M_MAM01910c" sboTerm="SBO:0000247" id="M_MAM01910c" name="galactose" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H12O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01910c">
+            <rdf:Description rdf:about="#M_MAM01910c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/gal"/>
@@ -52059,10 +52095,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01910l" sboTerm="SBO:0000247" id="MAM01910l" name="galactose" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H12O6">
+      <species metaid="M_MAM01910l" sboTerm="SBO:0000247" id="M_MAM01910l" name="galactose" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H12O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01910l">
+            <rdf:Description rdf:about="#M_MAM01910l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/gal"/>
@@ -52079,10 +52115,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01910e" sboTerm="SBO:0000247" id="MAM01910e" name="galactose" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H12O6">
+      <species metaid="M_MAM01910e" sboTerm="SBO:0000247" id="M_MAM01910e" name="galactose" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H12O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01910e">
+            <rdf:Description rdf:about="#M_MAM01910e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/gal"/>
@@ -52099,10 +52135,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01911c" sboTerm="SBO:0000247" id="MAM01911c" name="galactose-1-phosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H11O9P">
+      <species metaid="M_MAM01911c" sboTerm="SBO:0000247" id="M_MAM01911c" name="galactose-1-phosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H11O9P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01911c">
+            <rdf:Description rdf:about="#M_MAM01911c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C03384"/>
@@ -52113,10 +52149,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01912c" sboTerm="SBO:0000247" id="MAM01912c" name="galactosylgloboside" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C50H89N2O27RCO">
+      <species metaid="M_MAM01912c" sboTerm="SBO:0000247" id="M_MAM01912c" name="galactosylgloboside" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C50H89N2O27RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01912c">
+            <rdf:Description rdf:about="#M_MAM01912c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/galgbside_hs"/>
@@ -52129,10 +52165,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01912g" sboTerm="SBO:0000247" id="MAM01912g" name="galactosylgloboside" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C50H89N2O27RCO">
+      <species metaid="M_MAM01912g" sboTerm="SBO:0000247" id="M_MAM01912g" name="galactosylgloboside" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C50H89N2O27RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01912g">
+            <rdf:Description rdf:about="#M_MAM01912g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/galgbside_hs"/>
@@ -52145,10 +52181,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01913e" sboTerm="SBO:0000247" id="MAM01913e" name="galactosylglycerol" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H18O8">
+      <species metaid="M_MAM01913e" sboTerm="SBO:0000247" id="M_MAM01913e" name="galactosylglycerol" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H18O8">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01913e">
+            <rdf:Description rdf:about="#M_MAM01913e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:15754"/>
@@ -52162,10 +52198,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01914c" sboTerm="SBO:0000247" id="MAM01914c" name="galfuc12gal14acglcgalgluside heparan sulfate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C56H99N2O31RCO">
+      <species metaid="M_MAM01914c" sboTerm="SBO:0000247" id="M_MAM01914c" name="galfuc12gal14acglcgalgluside heparan sulfate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C56H99N2O31RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01914c">
+            <rdf:Description rdf:about="#M_MAM01914c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/galfuc12gal14acglcgalgluside_hs"/>
@@ -52177,10 +52213,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01914g" sboTerm="SBO:0000247" id="MAM01914g" name="galfuc12gal14acglcgalgluside heparan sulfate" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C56H99N2O31RCO">
+      <species metaid="M_MAM01914g" sboTerm="SBO:0000247" id="M_MAM01914g" name="galfuc12gal14acglcgalgluside heparan sulfate" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C56H99N2O31RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01914g">
+            <rdf:Description rdf:about="#M_MAM01914g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/galfuc12gal14acglcgalgluside_hs"/>
@@ -52192,10 +52228,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01914e" sboTerm="SBO:0000247" id="MAM01914e" name="galfuc12gal14acglcgalgluside heparan sulfate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C56H99N2O31RCO">
+      <species metaid="M_MAM01914e" sboTerm="SBO:0000247" id="M_MAM01914e" name="galfuc12gal14acglcgalgluside heparan sulfate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C56H99N2O31RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01914e">
+            <rdf:Description rdf:about="#M_MAM01914e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/galfuc12gal14acglcgalgluside_hs"/>
@@ -52207,10 +52243,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01915c" sboTerm="SBO:0000247" id="MAM01915c" name="galfucgalacglcgal14acglcgalgluside heparan sulfate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C70H122N3O41RCO">
+      <species metaid="M_MAM01915c" sboTerm="SBO:0000247" id="M_MAM01915c" name="galfucgalacglcgal14acglcgalgluside heparan sulfate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C70H122N3O41RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01915c">
+            <rdf:Description rdf:about="#M_MAM01915c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/galfucgalacglcgal14acglcgalgluside_hs"/>
@@ -52222,10 +52258,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01915g" sboTerm="SBO:0000247" id="MAM01915g" name="galfucgalacglcgal14acglcgalgluside heparan sulfate" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C70H122N3O41RCO">
+      <species metaid="M_MAM01915g" sboTerm="SBO:0000247" id="M_MAM01915g" name="galfucgalacglcgal14acglcgalgluside heparan sulfate" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C70H122N3O41RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01915g">
+            <rdf:Description rdf:about="#M_MAM01915g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/galfucgalacglcgal14acglcgalgluside_hs"/>
@@ -52237,10 +52273,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01915e" sboTerm="SBO:0000247" id="MAM01915e" name="galfucgalacglcgal14acglcgalgluside heparan sulfate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C70H122N3O41RCO">
+      <species metaid="M_MAM01915e" sboTerm="SBO:0000247" id="M_MAM01915e" name="galfucgalacglcgal14acglcgalgluside heparan sulfate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C70H122N3O41RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01915e">
+            <rdf:Description rdf:about="#M_MAM01915e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/galfucgalacglcgal14acglcgalgluside_hs"/>
@@ -52252,10 +52288,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01916c" sboTerm="SBO:0000247" id="MAM01916c" name="galgalfucfucgalacglcgalacglcgal14acglcgalgluside heparan sulfate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C96H165N4O60RCO">
+      <species metaid="M_MAM01916c" sboTerm="SBO:0000247" id="M_MAM01916c" name="galgalfucfucgalacglcgalacglcgal14acglcgalgluside heparan sulfate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C96H165N4O60RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01916c">
+            <rdf:Description rdf:about="#M_MAM01916c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/galgalfucfucgalacglcgalacglcgal14acglcgalgluside_hs"/>
@@ -52267,10 +52303,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01916g" sboTerm="SBO:0000247" id="MAM01916g" name="galgalfucfucgalacglcgalacglcgal14acglcgalgluside heparan sulfate" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C96H165N4O60RCO">
+      <species metaid="M_MAM01916g" sboTerm="SBO:0000247" id="M_MAM01916g" name="galgalfucfucgalacglcgalacglcgal14acglcgalgluside heparan sulfate" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C96H165N4O60RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01916g">
+            <rdf:Description rdf:about="#M_MAM01916g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/galgalfucfucgalacglcgalacglcgal14acglcgalgluside_hs"/>
@@ -52282,10 +52318,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01916e" sboTerm="SBO:0000247" id="MAM01916e" name="galgalfucfucgalacglcgalacglcgal14acglcgalgluside heparan sulfate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C96H165N4O60RCO">
+      <species metaid="M_MAM01916e" sboTerm="SBO:0000247" id="M_MAM01916e" name="galgalfucfucgalacglcgalacglcgal14acglcgalgluside heparan sulfate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C96H165N4O60RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01916e">
+            <rdf:Description rdf:about="#M_MAM01916e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/galgalfucfucgalacglcgalacglcgal14acglcgalgluside_hs"/>
@@ -52297,10 +52333,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01917c" sboTerm="SBO:0000247" id="MAM01917c" name="galgalgalthcrm heparan sulfate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C54H96NO32RCO">
+      <species metaid="M_MAM01917c" sboTerm="SBO:0000247" id="M_MAM01917c" name="galgalgalthcrm heparan sulfate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C54H96NO32RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01917c">
+            <rdf:Description rdf:about="#M_MAM01917c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/galgalgalthcrm_hs"/>
@@ -52312,10 +52348,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01917g" sboTerm="SBO:0000247" id="MAM01917g" name="galgalgalthcrm heparan sulfate" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C54H96NO32RCO">
+      <species metaid="M_MAM01917g" sboTerm="SBO:0000247" id="M_MAM01917g" name="galgalgalthcrm heparan sulfate" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C54H96NO32RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01917g">
+            <rdf:Description rdf:about="#M_MAM01917g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/galgalgalthcrm_hs"/>
@@ -52327,10 +52363,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01917e" sboTerm="SBO:0000247" id="MAM01917e" name="galgalgalthcrm heparan sulfate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C54H96NO32RCO">
+      <species metaid="M_MAM01917e" sboTerm="SBO:0000247" id="M_MAM01917e" name="galgalgalthcrm heparan sulfate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C54H96NO32RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01917e">
+            <rdf:Description rdf:about="#M_MAM01917e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/galgalgalthcrm_hs"/>
@@ -52342,10 +52378,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01918g" sboTerm="SBO:0000247" id="MAM01918g" name="galgalthcrm heparan sulfate" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C48H86NO27RCO">
+      <species metaid="M_MAM01918g" sboTerm="SBO:0000247" id="M_MAM01918g" name="galgalthcrm heparan sulfate" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C48H86NO27RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01918g">
+            <rdf:Description rdf:about="#M_MAM01918g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/galgalthcrm_hs"/>
@@ -52357,10 +52393,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01919c" sboTerm="SBO:0000247" id="MAM01919c" name="gal-glcnac-gal-globoside" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C64H112N3O37RCO">
+      <species metaid="M_MAM01919c" sboTerm="SBO:0000247" id="M_MAM01919c" name="gal-glcnac-gal-globoside" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C64H112N3O37RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01919c">
+            <rdf:Description rdf:about="#M_MAM01919c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/galacglcgalgbside_hs"/>
@@ -52372,10 +52408,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01919g" sboTerm="SBO:0000247" id="MAM01919g" name="gal-glcnac-gal-globoside" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C64H112N3O37RCO">
+      <species metaid="M_MAM01919g" sboTerm="SBO:0000247" id="M_MAM01919g" name="gal-glcnac-gal-globoside" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C64H112N3O37RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01919g">
+            <rdf:Description rdf:about="#M_MAM01919g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/galacglcgalgbside_hs"/>
@@ -52387,10 +52423,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01919e" sboTerm="SBO:0000247" id="MAM01919e" name="gal-glcnac-gal-globoside" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C64H112N3O37RCO">
+      <species metaid="M_MAM01919e" sboTerm="SBO:0000247" id="M_MAM01919e" name="gal-glcnac-gal-globoside" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C64H112N3O37RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01919e">
+            <rdf:Description rdf:about="#M_MAM01919e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/galacglcgalgbside_hs"/>
@@ -52402,10 +52438,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01920g" sboTerm="SBO:0000247" id="MAM01920g" name="galthcrm heparan sulfate" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C42H76NO22RCO">
+      <species metaid="M_MAM01920g" sboTerm="SBO:0000247" id="M_MAM01920g" name="galthcrm heparan sulfate" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C42H76NO22RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01920g">
+            <rdf:Description rdf:about="#M_MAM01920g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/galthcrm_hs"/>
@@ -52417,10 +52453,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01921g" sboTerm="SBO:0000247" id="MAM01921g" name="Gal-Xyl-L-Ser-[protein]" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C11H19O9X">
+      <species metaid="M_MAM01921g" sboTerm="SBO:0000247" id="M_MAM01921g" name="Gal-Xyl-L-Ser-[protein]" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C11H19O9X">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01921g">
+            <rdf:Description rdf:about="#M_MAM01921g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/lxser"/>
@@ -52433,10 +52469,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01922c" sboTerm="SBO:0000247" id="MAM01922c" name="gamma-butyrobetaine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H15NO2">
+      <species metaid="M_MAM01922c" sboTerm="SBO:0000247" id="M_MAM01922c" name="gamma-butyrobetaine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H15NO2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01922c">
+            <rdf:Description rdf:about="#M_MAM01922c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/4tmeabutn"/>
@@ -52451,10 +52487,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01923c" sboTerm="SBO:0000247" id="MAM01923c" name="gamma-carboxyethyl-hydroxychroman" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C15H19O4">
+      <species metaid="M_MAM01923c" sboTerm="SBO:0000247" id="M_MAM01923c" name="gamma-carboxyethyl-hydroxychroman" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C15H19O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01923c">
+            <rdf:Description rdf:about="#M_MAM01923c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM163392"/>
@@ -52466,10 +52502,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01923m" sboTerm="SBO:0000247" id="MAM01923m" name="gamma-carboxyethyl-hydroxychroman" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C15H19O4">
+      <species metaid="M_MAM01923m" sboTerm="SBO:0000247" id="M_MAM01923m" name="gamma-carboxyethyl-hydroxychroman" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C15H19O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01923m">
+            <rdf:Description rdf:about="#M_MAM01923m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM163392"/>
@@ -52481,10 +52517,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01924c" sboTerm="SBO:0000247" id="MAM01924c" name="gamma-CEHC-glucuronide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C21H27O10">
+      <species metaid="M_MAM01924c" sboTerm="SBO:0000247" id="M_MAM01924c" name="gamma-CEHC-glucuronide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C21H27O10">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01924c">
+            <rdf:Description rdf:about="#M_MAM01924c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM163393"/>
@@ -52495,10 +52531,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01925e" sboTerm="SBO:0000247" id="MAM01925e" name="gamma-glutamyl-3-aminopropiononitrile" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H13N3O3">
+      <species metaid="M_MAM01925e" sboTerm="SBO:0000247" id="M_MAM01925e" name="gamma-glutamyl-3-aminopropiononitrile" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H13N3O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01925e">
+            <rdf:Description rdf:about="#M_MAM01925e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C06114"/>
@@ -52510,10 +52546,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01926e" sboTerm="SBO:0000247" id="MAM01926e" name="gamma-glutamyl-beta-cyanoalanine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C9H12N3O5">
+      <species metaid="M_MAM01926e" sboTerm="SBO:0000247" id="M_MAM01926e" name="gamma-glutamyl-beta-cyanoalanine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C9H12N3O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01926e">
+            <rdf:Description rdf:about="#M_MAM01926e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:10565"/>
@@ -52528,10 +52564,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01927c" sboTerm="SBO:0000247" id="MAM01927c" name="gamma-glutamyl-cysteine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C8H13N2O5S">
+      <species metaid="M_MAM01927c" sboTerm="SBO:0000247" id="M_MAM01927c" name="gamma-glutamyl-cysteine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C8H13N2O5S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01927c">
+            <rdf:Description rdf:about="#M_MAM01927c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/glucys"/>
@@ -52547,10 +52583,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01928c" sboTerm="SBO:0000247" id="MAM01928c" name="gamma-glutamylglutathione" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C15H22N4O9S">
+      <species metaid="M_MAM01928c" sboTerm="SBO:0000247" id="M_MAM01928c" name="gamma-glutamylglutathione" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C15H22N4O9S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01928c">
+            <rdf:Description rdf:about="#M_MAM01928c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM167778"/>
@@ -52561,10 +52597,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01929c" sboTerm="SBO:0000247" id="MAM01929c" name="gamma-hydroxy-3-pyridinebutanoate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C9H10NO3">
+      <species metaid="M_MAM01929c" sboTerm="SBO:0000247" id="M_MAM01929c" name="gamma-hydroxy-3-pyridinebutanoate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C9H10NO3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01929c">
+            <rdf:Description rdf:about="#M_MAM01929c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C19579"/>
@@ -52576,10 +52612,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01930c" sboTerm="SBO:0000247" id="MAM01930c" name="gamma-L-glutamyl-L-alanine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C8H13N2O5">
+      <species metaid="M_MAM01930c" sboTerm="SBO:0000247" id="M_MAM01930c" name="gamma-L-glutamyl-L-alanine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C8H13N2O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01930c">
+            <rdf:Description rdf:about="#M_MAM01930c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM167779"/>
@@ -52591,10 +52627,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01931c" sboTerm="SBO:0000247" id="MAM01931c" name="gamma-L-glutamyl-L-alpha-aminobutyrate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C9H15N2O5">
+      <species metaid="M_MAM01931c" sboTerm="SBO:0000247" id="M_MAM01931c" name="gamma-L-glutamyl-L-alpha-aminobutyrate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C9H15N2O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01931c">
+            <rdf:Description rdf:about="#M_MAM01931c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM167780"/>
@@ -52605,10 +52641,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01932c" sboTerm="SBO:0000247" id="MAM01932c" name="gamma-linolenate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H29O2">
+      <species metaid="M_MAM01932c" sboTerm="SBO:0000247" id="M_MAM01932c" name="gamma-linolenate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H29O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01932c">
+            <rdf:Description rdf:about="#M_MAM01932c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/lnlncg"/>
@@ -52626,10 +52662,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01932l" sboTerm="SBO:0000247" id="MAM01932l" name="gamma-linolenate" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H29O2">
+      <species metaid="M_MAM01932l" sboTerm="SBO:0000247" id="M_MAM01932l" name="gamma-linolenate" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H29O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01932l">
+            <rdf:Description rdf:about="#M_MAM01932l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/lnlncg"/>
@@ -52647,10 +52683,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01932r" sboTerm="SBO:0000247" id="MAM01932r" name="gamma-linolenate" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H29O2">
+      <species metaid="M_MAM01932r" sboTerm="SBO:0000247" id="M_MAM01932r" name="gamma-linolenate" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H29O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01932r">
+            <rdf:Description rdf:about="#M_MAM01932r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/lnlncg"/>
@@ -52668,10 +52704,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01932e" sboTerm="SBO:0000247" id="MAM01932e" name="gamma-linolenate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H29O2">
+      <species metaid="M_MAM01932e" sboTerm="SBO:0000247" id="M_MAM01932e" name="gamma-linolenate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H29O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01932e">
+            <rdf:Description rdf:about="#M_MAM01932e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/lnlncg"/>
@@ -52689,10 +52725,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01933c" sboTerm="SBO:0000247" id="MAM01933c" name="gamma-linolenoylcarnitine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H43NO4">
+      <species metaid="M_MAM01933c" sboTerm="SBO:0000247" id="M_MAM01933c" name="gamma-linolenoylcarnitine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H43NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01933c">
+            <rdf:Description rdf:about="#M_MAM01933c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/lnlncgcrn"/>
@@ -52705,10 +52741,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01933m" sboTerm="SBO:0000247" id="MAM01933m" name="gamma-linolenoylcarnitine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H43NO4">
+      <species metaid="M_MAM01933m" sboTerm="SBO:0000247" id="M_MAM01933m" name="gamma-linolenoylcarnitine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H43NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01933m">
+            <rdf:Description rdf:about="#M_MAM01933m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/lnlncgcrn"/>
@@ -52721,10 +52757,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01933r" sboTerm="SBO:0000247" id="MAM01933r" name="gamma-linolenoylcarnitine" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H43NO4">
+      <species metaid="M_MAM01933r" sboTerm="SBO:0000247" id="M_MAM01933r" name="gamma-linolenoylcarnitine" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H43NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01933r">
+            <rdf:Description rdf:about="#M_MAM01933r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/lnlncgcrn"/>
@@ -52737,10 +52773,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01934c" sboTerm="SBO:0000247" id="MAM01934c" name="gamma-linolenoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C39H60N7O17P3S">
+      <species metaid="M_MAM01934c" sboTerm="SBO:0000247" id="M_MAM01934c" name="gamma-linolenoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C39H60N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01934c">
+            <rdf:Description rdf:about="#M_MAM01934c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/lnlncgcoa"/>
@@ -52758,10 +52794,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01934m" sboTerm="SBO:0000247" id="MAM01934m" name="gamma-linolenoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C39H60N7O17P3S">
+      <species metaid="M_MAM01934m" sboTerm="SBO:0000247" id="M_MAM01934m" name="gamma-linolenoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C39H60N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01934m">
+            <rdf:Description rdf:about="#M_MAM01934m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/lnlncgcoa"/>
@@ -52779,10 +52815,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01934x" sboTerm="SBO:0000247" id="MAM01934x" name="gamma-linolenoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C39H60N7O17P3S">
+      <species metaid="M_MAM01934x" sboTerm="SBO:0000247" id="M_MAM01934x" name="gamma-linolenoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C39H60N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01934x">
+            <rdf:Description rdf:about="#M_MAM01934x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/lnlncgcoa"/>
@@ -52800,10 +52836,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01934r" sboTerm="SBO:0000247" id="MAM01934r" name="gamma-linolenoyl-CoA" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C39H60N7O17P3S">
+      <species metaid="M_MAM01934r" sboTerm="SBO:0000247" id="M_MAM01934r" name="gamma-linolenoyl-CoA" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C39H60N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01934r">
+            <rdf:Description rdf:about="#M_MAM01934r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/lnlncgcoa"/>
@@ -52821,10 +52857,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01935c" sboTerm="SBO:0000247" id="MAM01935c" name="gamma-tocopherol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C28H48O2">
+      <species metaid="M_MAM01935c" sboTerm="SBO:0000247" id="M_MAM01935c" name="gamma-tocopherol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C28H48O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01935c">
+            <rdf:Description rdf:about="#M_MAM01935c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/gtocophe"/>
@@ -52837,10 +52873,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01935r" sboTerm="SBO:0000247" id="MAM01935r" name="gamma-tocopherol" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C28H48O2">
+      <species metaid="M_MAM01935r" sboTerm="SBO:0000247" id="M_MAM01935r" name="gamma-tocopherol" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C28H48O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01935r">
+            <rdf:Description rdf:about="#M_MAM01935r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/gtocophe"/>
@@ -52853,10 +52889,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01935e" sboTerm="SBO:0000247" id="MAM01935e" name="gamma-tocopherol" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C28H48O2">
+      <species metaid="M_MAM01935e" sboTerm="SBO:0000247" id="M_MAM01935e" name="gamma-tocopherol" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C28H48O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01935e">
+            <rdf:Description rdf:about="#M_MAM01935e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/gtocophe"/>
@@ -52869,10 +52905,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01936c" sboTerm="SBO:0000247" id="MAM01936c" name="gamma-tocopheroxyl-radical" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C28H47O2">
+      <species metaid="M_MAM01936c" sboTerm="SBO:0000247" id="M_MAM01936c" name="gamma-tocopheroxyl-radical" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C28H47O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01936c">
+            <rdf:Description rdf:about="#M_MAM01936c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM164787"/>
@@ -52883,10 +52919,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01937c" sboTerm="SBO:0000247" id="MAM01937c" name="gamma-tocopheryl-quinone" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C28H48O3">
+      <species metaid="M_MAM01937c" sboTerm="SBO:0000247" id="M_MAM01937c" name="gamma-tocopheryl-quinone" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C28H48O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01937c">
+            <rdf:Description rdf:about="#M_MAM01937c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM167781"/>
@@ -52897,10 +52933,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01938c" sboTerm="SBO:0000247" id="MAM01938c" name="gamma-tocotrienol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C28H42O2">
+      <species metaid="M_MAM01938c" sboTerm="SBO:0000247" id="M_MAM01938c" name="gamma-tocotrienol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C28H42O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01938c">
+            <rdf:Description rdf:about="#M_MAM01938c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM54335"/>
@@ -52911,10 +52947,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01938r" sboTerm="SBO:0000247" id="MAM01938r" name="gamma-tocotrienol" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C28H42O2">
+      <species metaid="M_MAM01938r" sboTerm="SBO:0000247" id="M_MAM01938r" name="gamma-tocotrienol" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C28H42O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01938r">
+            <rdf:Description rdf:about="#M_MAM01938r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM54335"/>
@@ -52925,10 +52961,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01938e" sboTerm="SBO:0000247" id="MAM01938e" name="gamma-tocotrienol" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C28H42O2">
+      <species metaid="M_MAM01938e" sboTerm="SBO:0000247" id="M_MAM01938e" name="gamma-tocotrienol" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C28H42O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01938e">
+            <rdf:Description rdf:about="#M_MAM01938e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM54335"/>
@@ -52939,10 +52975,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01939c" sboTerm="SBO:0000247" id="MAM01939c" name="GAP" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C3H5O6P">
+      <species metaid="M_MAM01939c" sboTerm="SBO:0000247" id="M_MAM01939c" name="GAP" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C3H5O6P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01939c">
+            <rdf:Description rdf:about="#M_MAM01939c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/g3p"/>
@@ -52957,10 +52993,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01940c" sboTerm="SBO:0000247" id="MAM01940c" name="GAR" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C7H14N2O8P">
+      <species metaid="M_MAM01940c" sboTerm="SBO:0000247" id="M_MAM01940c" name="GAR" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C7H14N2O8P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01940c">
+            <rdf:Description rdf:about="#M_MAM01940c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/gar"/>
@@ -52975,10 +53011,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01941c" sboTerm="SBO:0000247" id="MAM01941c" name="GD1a" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C66H111N4O38RCO">
+      <species metaid="M_MAM01941c" sboTerm="SBO:0000247" id="M_MAM01941c" name="GD1a" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C66H111N4O38RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01941c">
+            <rdf:Description rdf:about="#M_MAM01941c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/gd1a_hs"/>
@@ -52992,10 +53028,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01941g" sboTerm="SBO:0000247" id="MAM01941g" name="GD1a" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C66H111N4O38RCO">
+      <species metaid="M_MAM01941g" sboTerm="SBO:0000247" id="M_MAM01941g" name="GD1a" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C66H111N4O38RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01941g">
+            <rdf:Description rdf:about="#M_MAM01941g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/gd1a_hs"/>
@@ -53009,10 +53045,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM01942g" sboTerm="SBO:0000247" id="MAM01942g" name="GD1alpha" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C66H111N4O38RCO">
+      <species metaid="M_MAM01942g" sboTerm="SBO:0000247" id="M_MAM01942g" name="GD1alpha" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C66H111N4O38RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01942g">
+            <rdf:Description rdf:about="#M_MAM01942g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/gd1alpha_hs"/>
@@ -53023,10 +53059,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM01943c" sboTerm="SBO:0000247" id="MAM01943c" name="GD1b" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C66H111N4O38RCO">
+      <species metaid="M_MAM01943c" sboTerm="SBO:0000247" id="M_MAM01943c" name="GD1b" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C66H111N4O38RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01943c">
+            <rdf:Description rdf:about="#M_MAM01943c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/gd1b_hs"/>
@@ -53040,10 +53076,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM01943g" sboTerm="SBO:0000247" id="MAM01943g" name="GD1b" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C66H111N4O38RCO">
+      <species metaid="M_MAM01943g" sboTerm="SBO:0000247" id="M_MAM01943g" name="GD1b" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C66H111N4O38RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01943g">
+            <rdf:Description rdf:about="#M_MAM01943g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/gd1b_hs"/>
@@ -53057,10 +53093,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM01944c" sboTerm="SBO:0000247" id="MAM01944c" name="GD1beta" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C66H111N4O38RCO">
+      <species metaid="M_MAM01944c" sboTerm="SBO:0000247" id="M_MAM01944c" name="GD1beta" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C66H111N4O38RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01944c">
+            <rdf:Description rdf:about="#M_MAM01944c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/gd1b2_hs"/>
@@ -53072,10 +53108,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM01944g" sboTerm="SBO:0000247" id="MAM01944g" name="GD1beta" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C66H111N4O38RCO">
+      <species metaid="M_MAM01944g" sboTerm="SBO:0000247" id="M_MAM01944g" name="GD1beta" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C66H111N4O38RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01944g">
+            <rdf:Description rdf:about="#M_MAM01944g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/gd1b2_hs"/>
@@ -53087,10 +53123,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01944e" sboTerm="SBO:0000247" id="MAM01944e" name="GD1beta" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C66H111N4O38RCO">
+      <species metaid="M_MAM01944e" sboTerm="SBO:0000247" id="M_MAM01944e" name="GD1beta" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C66H111N4O38RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01944e">
+            <rdf:Description rdf:about="#M_MAM01944e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/gd1b2_hs"/>
@@ -53102,10 +53138,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01945c" sboTerm="SBO:0000247" id="MAM01945c" name="GD1c" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C66H111N4O38RCO">
+      <species metaid="M_MAM01945c" sboTerm="SBO:0000247" id="M_MAM01945c" name="GD1c" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C66H111N4O38RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01945c">
+            <rdf:Description rdf:about="#M_MAM01945c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/gd1c_hs"/>
@@ -53118,10 +53154,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM01945g" sboTerm="SBO:0000247" id="MAM01945g" name="GD1c" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C66H111N4O38RCO">
+      <species metaid="M_MAM01945g" sboTerm="SBO:0000247" id="M_MAM01945g" name="GD1c" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C66H111N4O38RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01945g">
+            <rdf:Description rdf:about="#M_MAM01945g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/gd1c_hs"/>
@@ -53134,10 +53170,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01945e" sboTerm="SBO:0000247" id="MAM01945e" name="GD1c" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C66H111N4O38RCO">
+      <species metaid="M_MAM01945e" sboTerm="SBO:0000247" id="M_MAM01945e" name="GD1c" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C66H111N4O38RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01945e">
+            <rdf:Description rdf:about="#M_MAM01945e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/gd1c_hs"/>
@@ -53150,10 +53186,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01946c" sboTerm="SBO:0000247" id="MAM01946c" name="GD2" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C60H101N4O33RCO">
+      <species metaid="M_MAM01946c" sboTerm="SBO:0000247" id="M_MAM01946c" name="GD2" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C60H101N4O33RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01946c">
+            <rdf:Description rdf:about="#M_MAM01946c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/gd2_hs"/>
@@ -53167,10 +53203,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01946g" sboTerm="SBO:0000247" id="MAM01946g" name="GD2" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C60H101N4O33RCO">
+      <species metaid="M_MAM01946g" sboTerm="SBO:0000247" id="M_MAM01946g" name="GD2" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C60H101N4O33RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01946g">
+            <rdf:Description rdf:about="#M_MAM01946g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/gd2_hs"/>
@@ -53184,10 +53220,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01947c" sboTerm="SBO:0000247" id="MAM01947c" name="GD3" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C52H88N3O28RCO">
+      <species metaid="M_MAM01947c" sboTerm="SBO:0000247" id="M_MAM01947c" name="GD3" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C52H88N3O28RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01947c">
+            <rdf:Description rdf:about="#M_MAM01947c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/gd3_hs"/>
@@ -53201,10 +53237,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM01947g" sboTerm="SBO:0000247" id="MAM01947g" name="GD3" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C52H88N3O28RCO">
+      <species metaid="M_MAM01947g" sboTerm="SBO:0000247" id="M_MAM01947g" name="GD3" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C52H88N3O28RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01947g">
+            <rdf:Description rdf:about="#M_MAM01947g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/gd3_hs"/>
@@ -53218,10 +53254,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01948c" sboTerm="SBO:0000247" id="MAM01948c" name="GDP" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C10H12N5O11P2">
+      <species metaid="M_MAM01948c" sboTerm="SBO:0000247" id="M_MAM01948c" name="GDP" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C10H12N5O11P2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01948c">
+            <rdf:Description rdf:about="#M_MAM01948c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/gdp"/>
@@ -53237,10 +53273,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01948g" sboTerm="SBO:0000247" id="MAM01948g" name="GDP" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C10H12N5O11P2">
+      <species metaid="M_MAM01948g" sboTerm="SBO:0000247" id="M_MAM01948g" name="GDP" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C10H12N5O11P2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01948g">
+            <rdf:Description rdf:about="#M_MAM01948g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/gdp"/>
@@ -53256,10 +53292,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01948m" sboTerm="SBO:0000247" id="MAM01948m" name="GDP" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C10H12N5O11P2">
+      <species metaid="M_MAM01948m" sboTerm="SBO:0000247" id="M_MAM01948m" name="GDP" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C10H12N5O11P2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01948m">
+            <rdf:Description rdf:about="#M_MAM01948m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/gdp"/>
@@ -53275,10 +53311,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01948n" sboTerm="SBO:0000247" id="MAM01948n" name="GDP" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C10H12N5O11P2">
+      <species metaid="M_MAM01948n" sboTerm="SBO:0000247" id="M_MAM01948n" name="GDP" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C10H12N5O11P2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01948n">
+            <rdf:Description rdf:about="#M_MAM01948n">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/gdp"/>
@@ -53294,10 +53330,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01948e" sboTerm="SBO:0000247" id="MAM01948e" name="GDP" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C10H12N5O11P2">
+      <species metaid="M_MAM01948e" sboTerm="SBO:0000247" id="M_MAM01948e" name="GDP" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C10H12N5O11P2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01948e">
+            <rdf:Description rdf:about="#M_MAM01948e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/gdp"/>
@@ -53313,10 +53349,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM01949c" sboTerm="SBO:0000247" id="MAM01949c" name="GDP-4-dehydro-6-deoxy-D-mannose" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C16H21N5O15P2">
+      <species metaid="M_MAM01949c" sboTerm="SBO:0000247" id="M_MAM01949c" name="GDP-4-dehydro-6-deoxy-D-mannose" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C16H21N5O15P2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01949c">
+            <rdf:Description rdf:about="#M_MAM01949c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/gdpddman"/>
@@ -53331,10 +53367,10 @@
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-      <species metaid="MAM01950c" sboTerm="SBO:0000247" id="MAM01950c" name="GDP-L-fucose" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C16H23N5O15P2">
+      <species metaid="M_MAM01950c" sboTerm="SBO:0000247" id="M_MAM01950c" name="GDP-L-fucose" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C16H23N5O15P2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01950c">
+            <rdf:Description rdf:about="#M_MAM01950c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/gdpfuc"/>
@@ -53349,10 +53385,10 @@
           </rdf:RDF>
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-      <species metaid="MAM01950g" sboTerm="SBO:0000247" id="MAM01950g" name="GDP-L-fucose" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C16H23N5O15P2">
+      <species metaid="M_MAM01950g" sboTerm="SBO:0000247" id="M_MAM01950g" name="GDP-L-fucose" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C16H23N5O15P2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01950g">
+            <rdf:Description rdf:about="#M_MAM01950g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/gdpfuc"/>
@@ -53367,10 +53403,10 @@
           </rdf:RDF>
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-      <species metaid="MAM01951c" sboTerm="SBO:0000247" id="MAM01951c" name="GDP-mannose" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C16H23N5O16P2">
+      <species metaid="M_MAM01951c" sboTerm="SBO:0000247" id="M_MAM01951c" name="GDP-mannose" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C16H23N5O16P2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01951c">
+            <rdf:Description rdf:about="#M_MAM01951c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/gdpmann"/>
@@ -53385,10 +53421,10 @@
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       </species>
-      <species metaid="MAM01952c" sboTerm="SBO:0000247" id="MAM01952c" name="gentisate aldehyde" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H6O3">
+      <species metaid="M_MAM01952c" sboTerm="SBO:0000247" id="M_MAM01952c" name="gentisate aldehyde" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H6O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01952c">
+            <rdf:Description rdf:about="#M_MAM01952c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C05585"/>
@@ -53401,10 +53437,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM01953c" sboTerm="SBO:0000247" id="MAM01953c" name="geranyl-PP" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C10H17O7P2">
+      <species metaid="M_MAM01953c" sboTerm="SBO:0000247" id="M_MAM01953c" name="geranyl-PP" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C10H17O7P2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01953c">
+            <rdf:Description rdf:about="#M_MAM01953c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/grdp"/>
@@ -53419,10 +53455,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM01954g" sboTerm="SBO:0000247" id="MAM01954g" name="glcnac-alpha-1,4-core 1" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C22H37N2O15X">
+      <species metaid="M_MAM01954g" sboTerm="SBO:0000247" id="M_MAM01954g" name="glcnac-alpha-1,4-core 1" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C22H37N2O15X">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01954g">
+            <rdf:Description rdf:about="#M_MAM01954g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/gncore1"/>
@@ -53434,10 +53470,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM01955g" sboTerm="SBO:0000247" id="MAM01955g" name="glcnac-alpha-1,4-core 2" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C30H50N3O20X">
+      <species metaid="M_MAM01955g" sboTerm="SBO:0000247" id="M_MAM01955g" name="glcnac-alpha-1,4-core 2" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C30H50N3O20X">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01955g">
+            <rdf:Description rdf:about="#M_MAM01955g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/gncore2"/>
@@ -53449,10 +53485,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01955c" sboTerm="SBO:0000247" id="MAM01955c" name="glcnac-alpha-1,4-core 2" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C30H50N3O20X">
+      <species metaid="M_MAM01955c" sboTerm="SBO:0000247" id="M_MAM01955c" name="glcnac-alpha-1,4-core 2" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C30H50N3O20X">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01955c">
+            <rdf:Description rdf:about="#M_MAM01955c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/gncore2"/>
@@ -53464,10 +53500,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM01955e" sboTerm="SBO:0000247" id="MAM01955e" name="glcnac-alpha-1,4-core 2" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C30H50N3O20X">
+      <species metaid="M_MAM01955e" sboTerm="SBO:0000247" id="M_MAM01955e" name="glcnac-alpha-1,4-core 2" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C30H50N3O20X">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01955e">
+            <rdf:Description rdf:about="#M_MAM01955e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/gncore2"/>
@@ -53479,10 +53515,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01956g" sboTerm="SBO:0000247" id="MAM01956g" name="glcnac-gal-globoside" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C58H102N3O32RCO">
+      <species metaid="M_MAM01956g" sboTerm="SBO:0000247" id="M_MAM01956g" name="glcnac-gal-globoside" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C58H102N3O32RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01956g">
+            <rdf:Description rdf:about="#M_MAM01956g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/acglcgalgbside_hs"/>
@@ -53494,10 +53530,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01957c" sboTerm="SBO:0000247" id="MAM01957c" name="globin" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C57H88O2">
+      <species metaid="M_MAM01957c" sboTerm="SBO:0000247" id="M_MAM01957c" name="globin" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C57H88O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01957c">
+            <rdf:Description rdf:about="#M_MAM01957c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:5386"/>
@@ -53510,10 +53546,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM01959c" sboTerm="SBO:0000247" id="MAM01959c" name="globoside" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C44H79N2O22RCO">
+      <species metaid="M_MAM01959c" sboTerm="SBO:0000247" id="M_MAM01959c" name="globoside" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C44H79N2O22RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01959c">
+            <rdf:Description rdf:about="#M_MAM01959c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/gbside_hs"/>
@@ -53527,10 +53563,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01959g" sboTerm="SBO:0000247" id="MAM01959g" name="globoside" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C44H79N2O22RCO">
+      <species metaid="M_MAM01959g" sboTerm="SBO:0000247" id="M_MAM01959g" name="globoside" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C44H79N2O22RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01959g">
+            <rdf:Description rdf:about="#M_MAM01959g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/gbside_hs"/>
@@ -53544,10 +53580,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01959l" sboTerm="SBO:0000247" id="MAM01959l" name="globoside" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C44H79N2O22RCO">
+      <species metaid="M_MAM01959l" sboTerm="SBO:0000247" id="M_MAM01959l" name="globoside" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C44H79N2O22RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01959l">
+            <rdf:Description rdf:about="#M_MAM01959l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/gbside_hs"/>
@@ -53561,10 +53597,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01959e" sboTerm="SBO:0000247" id="MAM01959e" name="globoside" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C44H79N2O22RCO">
+      <species metaid="M_MAM01959e" sboTerm="SBO:0000247" id="M_MAM01959e" name="globoside" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C44H79N2O22RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01959e">
+            <rdf:Description rdf:about="#M_MAM01959e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/gbside_hs"/>
@@ -53578,10 +53614,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01960c" sboTerm="SBO:0000247" id="MAM01960c" name="globotriaosylceramide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C36H66NO17RCO">
+      <species metaid="M_MAM01960c" sboTerm="SBO:0000247" id="M_MAM01960c" name="globotriaosylceramide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C36H66NO17RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01960c">
+            <rdf:Description rdf:about="#M_MAM01960c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/thcrm_hs"/>
@@ -53595,10 +53631,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01960g" sboTerm="SBO:0000247" id="MAM01960g" name="globotriaosylceramide" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C36H66NO17RCO">
+      <species metaid="M_MAM01960g" sboTerm="SBO:0000247" id="M_MAM01960g" name="globotriaosylceramide" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C36H66NO17RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01960g">
+            <rdf:Description rdf:about="#M_MAM01960g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/thcrm_hs"/>
@@ -53612,10 +53648,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01960l" sboTerm="SBO:0000247" id="MAM01960l" name="globotriaosylceramide" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C36H66NO17RCO">
+      <species metaid="M_MAM01960l" sboTerm="SBO:0000247" id="M_MAM01960l" name="globotriaosylceramide" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C36H66NO17RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01960l">
+            <rdf:Description rdf:about="#M_MAM01960l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/thcrm_hs"/>
@@ -53629,10 +53665,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01961c" sboTerm="SBO:0000247" id="MAM01961c" name="glucono-1,5-lactone-6-phosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H9O9P">
+      <species metaid="M_MAM01961c" sboTerm="SBO:0000247" id="M_MAM01961c" name="glucono-1,5-lactone-6-phosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H9O9P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01961c">
+            <rdf:Description rdf:about="#M_MAM01961c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/6pgl"/>
@@ -53647,10 +53683,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01961r" sboTerm="SBO:0000247" id="MAM01961r" name="glucono-1,5-lactone-6-phosphate" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H9O9P">
+      <species metaid="M_MAM01961r" sboTerm="SBO:0000247" id="M_MAM01961r" name="glucono-1,5-lactone-6-phosphate" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H9O9P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01961r">
+            <rdf:Description rdf:about="#M_MAM01961r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/6pgl"/>
@@ -53665,10 +53701,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01962c" sboTerm="SBO:0000247" id="MAM01962c" name="glucosamine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C6H14NO5">
+      <species metaid="M_MAM01962c" sboTerm="SBO:0000247" id="M_MAM01962c" name="glucosamine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C6H14NO5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01962c">
+            <rdf:Description rdf:about="#M_MAM01962c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/gam"/>
@@ -53684,10 +53720,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01962e" sboTerm="SBO:0000247" id="MAM01962e" name="glucosamine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C6H14NO5">
+      <species metaid="M_MAM01962e" sboTerm="SBO:0000247" id="M_MAM01962e" name="glucosamine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C6H14NO5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01962e">
+            <rdf:Description rdf:about="#M_MAM01962e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/gam"/>
@@ -53703,10 +53739,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01963c" sboTerm="SBO:0000247" id="MAM01963c" name="glucosamine-6-phosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H13NO8P">
+      <species metaid="M_MAM01963c" sboTerm="SBO:0000247" id="M_MAM01963c" name="glucosamine-6-phosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H13NO8P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01963c">
+            <rdf:Description rdf:about="#M_MAM01963c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/gam6p"/>
@@ -53721,10 +53757,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01964c" sboTerm="SBO:0000247" id="MAM01964c" name="glucosaminyl-acylphosphatidylinositol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C33H58NO18PR2">
+      <species metaid="M_MAM01964c" sboTerm="SBO:0000247" id="M_MAM01964c" name="glucosaminyl-acylphosphatidylinositol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C33H58NO18PR2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01964c">
+            <rdf:Description rdf:about="#M_MAM01964c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/gacpail_hs"/>
@@ -53736,10 +53772,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01964r" sboTerm="SBO:0000247" id="MAM01964r" name="glucosaminyl-acylphosphatidylinositol" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C33H58NO18PR2">
+      <species metaid="M_MAM01964r" sboTerm="SBO:0000247" id="M_MAM01964r" name="glucosaminyl-acylphosphatidylinositol" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C33H58NO18PR2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01964r">
+            <rdf:Description rdf:about="#M_MAM01964r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/gacpail_hs"/>
@@ -53751,10 +53787,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01965c" sboTerm="SBO:0000247" id="MAM01965c" name="glucose" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H12O6">
+      <species metaid="M_MAM01965c" sboTerm="SBO:0000247" id="M_MAM01965c" name="glucose" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H12O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01965c">
+            <rdf:Description rdf:about="#M_MAM01965c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/glc__D"/>
@@ -53771,10 +53807,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01965g" sboTerm="SBO:0000247" id="MAM01965g" name="glucose" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H12O6">
+      <species metaid="M_MAM01965g" sboTerm="SBO:0000247" id="M_MAM01965g" name="glucose" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H12O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01965g">
+            <rdf:Description rdf:about="#M_MAM01965g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/glc__D"/>
@@ -53791,10 +53827,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01965l" sboTerm="SBO:0000247" id="MAM01965l" name="glucose" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H12O6">
+      <species metaid="M_MAM01965l" sboTerm="SBO:0000247" id="M_MAM01965l" name="glucose" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H12O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01965l">
+            <rdf:Description rdf:about="#M_MAM01965l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/glc__D"/>
@@ -53811,10 +53847,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01965r" sboTerm="SBO:0000247" id="MAM01965r" name="glucose" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H12O6">
+      <species metaid="M_MAM01965r" sboTerm="SBO:0000247" id="M_MAM01965r" name="glucose" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H12O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01965r">
+            <rdf:Description rdf:about="#M_MAM01965r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/glc__D"/>
@@ -53831,10 +53867,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01965e" sboTerm="SBO:0000247" id="MAM01965e" name="glucose" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H12O6">
+      <species metaid="M_MAM01965e" sboTerm="SBO:0000247" id="M_MAM01965e" name="glucose" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H12O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01965e">
+            <rdf:Description rdf:about="#M_MAM01965e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/glc__D"/>
@@ -53851,10 +53887,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01966c" sboTerm="SBO:0000247" id="MAM01966c" name="glucose-1,6-bisphosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C6H11O12P2">
+      <species metaid="M_MAM01966c" sboTerm="SBO:0000247" id="M_MAM01966c" name="glucose-1,6-bisphosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C6H11O12P2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01966c">
+            <rdf:Description rdf:about="#M_MAM01966c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:18148"/>
@@ -53868,10 +53904,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01966e" sboTerm="SBO:0000247" id="MAM01966e" name="glucose-1,6-bisphosphate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C6H11O12P2">
+      <species metaid="M_MAM01966e" sboTerm="SBO:0000247" id="M_MAM01966e" name="glucose-1,6-bisphosphate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C6H11O12P2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01966e">
+            <rdf:Description rdf:about="#M_MAM01966e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:18148"/>
@@ -53885,10 +53921,10 @@
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       </species>
-      <species metaid="MAM01967c" sboTerm="SBO:0000247" id="MAM01967c" name="glucose-1-phosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H11O9P">
+      <species metaid="M_MAM01967c" sboTerm="SBO:0000247" id="M_MAM01967c" name="glucose-1-phosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H11O9P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01967c">
+            <rdf:Description rdf:about="#M_MAM01967c">
               <bqbiol:is>
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                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/g1p"/>
@@ -53903,10 +53939,10 @@
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-      <species metaid="MAM01968c" sboTerm="SBO:0000247" id="MAM01968c" name="glucose-6-phosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H11O9P">
+      <species metaid="M_MAM01968c" sboTerm="SBO:0000247" id="M_MAM01968c" name="glucose-6-phosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H11O9P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01968c">
+            <rdf:Description rdf:about="#M_MAM01968c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/g6p"/>
@@ -53921,10 +53957,10 @@
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-      <species metaid="MAM01968r" sboTerm="SBO:0000247" id="MAM01968r" name="glucose-6-phosphate" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H11O9P">
+      <species metaid="M_MAM01968r" sboTerm="SBO:0000247" id="M_MAM01968r" name="glucose-6-phosphate" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H11O9P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01968r">
+            <rdf:Description rdf:about="#M_MAM01968r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/g6p"/>
@@ -53939,10 +53975,10 @@
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-      <species metaid="MAM01969g" sboTerm="SBO:0000247" id="MAM01969g" name="glucosyl-(alpha-D-mannosyl)6-beta-D-mannosyl-diacetylchitobiosyl-L-asparagine (protein)" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C64H107N2O50X">
+      <species metaid="M_MAM01969g" sboTerm="SBO:0000247" id="M_MAM01969g" name="glucosyl-(alpha-D-mannosyl)6-beta-D-mannosyl-diacetylchitobiosyl-L-asparagine (protein)" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C64H107N2O50X">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01969g">
+            <rdf:Description rdf:about="#M_MAM01969g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/g1m6masnB1"/>
@@ -53954,10 +53990,10 @@
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-      <species metaid="MAM01969r" sboTerm="SBO:0000247" id="MAM01969r" name="glucosyl-(alpha-D-mannosyl)6-beta-D-mannosyl-diacetylchitobiosyl-L-asparagine (protein)" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C64H107N2O50X">
+      <species metaid="M_MAM01969r" sboTerm="SBO:0000247" id="M_MAM01969r" name="glucosyl-(alpha-D-mannosyl)6-beta-D-mannosyl-diacetylchitobiosyl-L-asparagine (protein)" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C64H107N2O50X">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01969r">
+            <rdf:Description rdf:about="#M_MAM01969r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/g1m6masnB1"/>
@@ -53969,10 +54005,10 @@
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-      <species metaid="MAM01970g" sboTerm="SBO:0000247" id="MAM01970g" name="glucosyl-(alpha-D-mannosyl)7-beta-D-mannosyl-diacetylchitobiosyl-L-asparagine, isoform B (protein)" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C70H117N2O55X">
+      <species metaid="M_MAM01970g" sboTerm="SBO:0000247" id="M_MAM01970g" name="glucosyl-(alpha-D-mannosyl)7-beta-D-mannosyl-diacetylchitobiosyl-L-asparagine, isoform B (protein)" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C70H117N2O55X">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01970g">
+            <rdf:Description rdf:about="#M_MAM01970g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/g1m7masnB"/>
@@ -53984,10 +54020,10 @@
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         </annotation>
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-      <species metaid="MAM01970r" sboTerm="SBO:0000247" id="MAM01970r" name="glucosyl-(alpha-D-mannosyl)7-beta-D-mannosyl-diacetylchitobiosyl-L-asparagine, isoform B (protein)" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C70H117N2O55X">
+      <species metaid="M_MAM01970r" sboTerm="SBO:0000247" id="M_MAM01970r" name="glucosyl-(alpha-D-mannosyl)7-beta-D-mannosyl-diacetylchitobiosyl-L-asparagine, isoform B (protein)" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C70H117N2O55X">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01970r">
+            <rdf:Description rdf:about="#M_MAM01970r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/g1m7masnB"/>
@@ -53999,10 +54035,10 @@
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         </annotation>
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-      <species metaid="MAM01971g" sboTerm="SBO:0000247" id="MAM01971g" name="glucosyl-(alpha-D-mannosyl)7-beta-D-mannosyl-diacetylchitobiosyl-L-asparagine, isoform C (protein)" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C70H117N2O55X">
+      <species metaid="M_MAM01971g" sboTerm="SBO:0000247" id="M_MAM01971g" name="glucosyl-(alpha-D-mannosyl)7-beta-D-mannosyl-diacetylchitobiosyl-L-asparagine, isoform C (protein)" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C70H117N2O55X">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01971g">
+            <rdf:Description rdf:about="#M_MAM01971g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/g1m7masnC"/>
@@ -54014,10 +54050,10 @@
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         </annotation>
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-      <species metaid="MAM01971r" sboTerm="SBO:0000247" id="MAM01971r" name="glucosyl-(alpha-D-mannosyl)7-beta-D-mannosyl-diacetylchitobiosyl-L-asparagine, isoform C (protein)" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C70H117N2O55X">
+      <species metaid="M_MAM01971r" sboTerm="SBO:0000247" id="M_MAM01971r" name="glucosyl-(alpha-D-mannosyl)7-beta-D-mannosyl-diacetylchitobiosyl-L-asparagine, isoform C (protein)" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C70H117N2O55X">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01971r">
+            <rdf:Description rdf:about="#M_MAM01971r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/g1m7masnC"/>
@@ -54029,10 +54065,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01972c" sboTerm="SBO:0000247" id="MAM01972c" name="glucosylceramide pool" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C24H46NO7RCO">
+      <species metaid="M_MAM01972c" sboTerm="SBO:0000247" id="M_MAM01972c" name="glucosylceramide pool" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C24H46NO7RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01972c">
+            <rdf:Description rdf:about="#M_MAM01972c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/gluside_hs"/>
@@ -54046,10 +54082,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01972g" sboTerm="SBO:0000247" id="MAM01972g" name="glucosylceramide pool" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C24H46NO7RCO">
+      <species metaid="M_MAM01972g" sboTerm="SBO:0000247" id="M_MAM01972g" name="glucosylceramide pool" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C24H46NO7RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01972g">
+            <rdf:Description rdf:about="#M_MAM01972g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/gluside_hs"/>
@@ -54063,10 +54099,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM01972l" sboTerm="SBO:0000247" id="MAM01972l" name="glucosylceramide pool" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C24H46NO7RCO">
+      <species metaid="M_MAM01972l" sboTerm="SBO:0000247" id="M_MAM01972l" name="glucosylceramide pool" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C24H46NO7RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01972l">
+            <rdf:Description rdf:about="#M_MAM01972l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/gluside_hs"/>
@@ -54080,10 +54116,10 @@
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         </annotation>
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-      <species metaid="MAM01972r" sboTerm="SBO:0000247" id="MAM01972r" name="glucosylceramide pool" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C24H46NO7RCO">
+      <species metaid="M_MAM01972r" sboTerm="SBO:0000247" id="M_MAM01972r" name="glucosylceramide pool" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C24H46NO7RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01972r">
+            <rdf:Description rdf:about="#M_MAM01972r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/gluside_hs"/>
@@ -54097,10 +54133,10 @@
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         </annotation>
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-      <species metaid="MAM01972e" sboTerm="SBO:0000247" id="MAM01972e" name="glucosylceramide pool" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C24H46NO7RCO">
+      <species metaid="M_MAM01972e" sboTerm="SBO:0000247" id="M_MAM01972e" name="glucosylceramide pool" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C24H46NO7RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01972e">
+            <rdf:Description rdf:about="#M_MAM01972e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/gluside_hs"/>
@@ -54114,10 +54150,10 @@
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-      <species metaid="MAM01973c" sboTerm="SBO:0000247" id="MAM01973c" name="glucuronate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H9O7">
+      <species metaid="M_MAM01973c" sboTerm="SBO:0000247" id="M_MAM01973c" name="glucuronate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H9O7">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01973c">
+            <rdf:Description rdf:about="#M_MAM01973c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/glcur"/>
@@ -54133,10 +54169,10 @@
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         </annotation>
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-      <species metaid="MAM01973l" sboTerm="SBO:0000247" id="MAM01973l" name="glucuronate" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H9O7">
+      <species metaid="M_MAM01973l" sboTerm="SBO:0000247" id="M_MAM01973l" name="glucuronate" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H9O7">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01973l">
+            <rdf:Description rdf:about="#M_MAM01973l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/glcur"/>
@@ -54152,10 +54188,10 @@
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-      <species metaid="MAM01973r" sboTerm="SBO:0000247" id="MAM01973r" name="glucuronate" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H9O7">
+      <species metaid="M_MAM01973r" sboTerm="SBO:0000247" id="M_MAM01973r" name="glucuronate" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H9O7">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01973r">
+            <rdf:Description rdf:about="#M_MAM01973r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/glcur"/>
@@ -54171,10 +54207,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01974c" sboTerm="SBO:0000247" id="MAM01974c" name="glutamate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C5H8NO4">
+      <species metaid="M_MAM01974c" sboTerm="SBO:0000247" id="M_MAM01974c" name="glutamate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C5H8NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01974c">
+            <rdf:Description rdf:about="#M_MAM01974c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/glu__L"/>
@@ -54190,10 +54226,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01974l" sboTerm="SBO:0000247" id="MAM01974l" name="glutamate" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C5H8NO4">
+      <species metaid="M_MAM01974l" sboTerm="SBO:0000247" id="M_MAM01974l" name="glutamate" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C5H8NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01974l">
+            <rdf:Description rdf:about="#M_MAM01974l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/glu__L"/>
@@ -54209,10 +54245,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01974m" sboTerm="SBO:0000247" id="MAM01974m" name="glutamate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C5H8NO4">
+      <species metaid="M_MAM01974m" sboTerm="SBO:0000247" id="M_MAM01974m" name="glutamate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C5H8NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01974m">
+            <rdf:Description rdf:about="#M_MAM01974m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/glu__L"/>
@@ -54228,10 +54264,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01974r" sboTerm="SBO:0000247" id="MAM01974r" name="glutamate" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C5H8NO4">
+      <species metaid="M_MAM01974r" sboTerm="SBO:0000247" id="M_MAM01974r" name="glutamate" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C5H8NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01974r">
+            <rdf:Description rdf:about="#M_MAM01974r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/glu__L"/>
@@ -54247,10 +54283,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01974e" sboTerm="SBO:0000247" id="MAM01974e" name="glutamate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C5H8NO4">
+      <species metaid="M_MAM01974e" sboTerm="SBO:0000247" id="M_MAM01974e" name="glutamate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C5H8NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01974e">
+            <rdf:Description rdf:about="#M_MAM01974e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/glu__L"/>
@@ -54266,10 +54302,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01975c" sboTerm="SBO:0000247" id="MAM01975c" name="glutamine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H10N2O3">
+      <species metaid="M_MAM01975c" sboTerm="SBO:0000247" id="M_MAM01975c" name="glutamine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H10N2O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01975c">
+            <rdf:Description rdf:about="#M_MAM01975c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/gln__L"/>
@@ -54285,10 +54321,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01975l" sboTerm="SBO:0000247" id="MAM01975l" name="glutamine" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H10N2O3">
+      <species metaid="M_MAM01975l" sboTerm="SBO:0000247" id="M_MAM01975l" name="glutamine" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H10N2O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01975l">
+            <rdf:Description rdf:about="#M_MAM01975l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/gln__L"/>
@@ -54304,10 +54340,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01975m" sboTerm="SBO:0000247" id="MAM01975m" name="glutamine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H10N2O3">
+      <species metaid="M_MAM01975m" sboTerm="SBO:0000247" id="M_MAM01975m" name="glutamine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H10N2O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01975m">
+            <rdf:Description rdf:about="#M_MAM01975m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/gln__L"/>
@@ -54323,10 +54359,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01975e" sboTerm="SBO:0000247" id="MAM01975e" name="glutamine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H10N2O3">
+      <species metaid="M_MAM01975e" sboTerm="SBO:0000247" id="M_MAM01975e" name="glutamine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H10N2O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01975e">
+            <rdf:Description rdf:about="#M_MAM01975e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/gln__L"/>
@@ -54342,10 +54378,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01976m" sboTerm="SBO:0000247" id="MAM01976m" name="glutamyl-5-phosphate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C5H8NO7P">
+      <species metaid="M_MAM01976m" sboTerm="SBO:0000247" id="M_MAM01976m" name="glutamyl-5-phosphate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C5H8NO7P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01976m">
+            <rdf:Description rdf:about="#M_MAM01976m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/glu5p"/>
@@ -54360,10 +54396,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01977m" sboTerm="SBO:0000247" id="MAM01977m" name="glutaryl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C26H37N7O19P3S">
+      <species metaid="M_MAM01977m" sboTerm="SBO:0000247" id="M_MAM01977m" name="glutaryl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C26H37N7O19P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01977m">
+            <rdf:Description rdf:about="#M_MAM01977m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/glutcoa"/>
@@ -54378,10 +54414,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01978c" sboTerm="SBO:0000247" id="MAM01978c" name="glutathione episulfonium ion" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C12H18N3O6S">
+      <species metaid="M_MAM01978c" sboTerm="SBO:0000247" id="M_MAM01978c" name="glutathione episulfonium ion" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C12H18N3O6S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01978c">
+            <rdf:Description rdf:about="#M_MAM01978c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C14874"/>
@@ -54393,10 +54429,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01979c" sboTerm="SBO:0000247" id="MAM01979c" name="glutathionyl-3-hydroxykynurenine glucoside" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C26H36N5O14S">
+      <species metaid="M_MAM01979c" sboTerm="SBO:0000247" id="M_MAM01979c" name="glutathionyl-3-hydroxykynurenine glucoside" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C26H36N5O14S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01979c">
+            <rdf:Description rdf:about="#M_MAM01979c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM165154"/>
@@ -54407,10 +54443,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01980c" sboTerm="SBO:0000247" id="MAM01980c" name="glutathionyl-leukotriene C4" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="X">
+      <species metaid="M_MAM01980c" sboTerm="SBO:0000247" id="M_MAM01980c" name="glutathionyl-leukotriene C4" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="X">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01980c">
+            <rdf:Description rdf:about="#M_MAM01980c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM162246"/>
@@ -54421,10 +54457,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01980e" sboTerm="SBO:0000247" id="MAM01980e" name="glutathionyl-leukotriene C4" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="X">
+      <species metaid="M_MAM01980e" sboTerm="SBO:0000247" id="M_MAM01980e" name="glutathionyl-leukotriene C4" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="X">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01980e">
+            <rdf:Description rdf:about="#M_MAM01980e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM162246"/>
@@ -54435,10 +54471,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01981c" sboTerm="SBO:0000247" id="MAM01981c" name="glyceraldehyde" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H6O3">
+      <species metaid="M_MAM01981c" sboTerm="SBO:0000247" id="M_MAM01981c" name="glyceraldehyde" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H6O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01981c">
+            <rdf:Description rdf:about="#M_MAM01981c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/glyald"/>
@@ -54455,10 +54491,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01981m" sboTerm="SBO:0000247" id="MAM01981m" name="glyceraldehyde" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H6O3">
+      <species metaid="M_MAM01981m" sboTerm="SBO:0000247" id="M_MAM01981m" name="glyceraldehyde" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H6O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01981m">
+            <rdf:Description rdf:about="#M_MAM01981m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/glyald"/>
@@ -54475,10 +54511,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01982c" sboTerm="SBO:0000247" id="MAM01982c" name="glycerate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C3H5O4">
+      <species metaid="M_MAM01982c" sboTerm="SBO:0000247" id="M_MAM01982c" name="glycerate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C3H5O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01982c">
+            <rdf:Description rdf:about="#M_MAM01982c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/glyc__R"/>
@@ -54494,10 +54530,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01982m" sboTerm="SBO:0000247" id="MAM01982m" name="glycerate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C3H5O4">
+      <species metaid="M_MAM01982m" sboTerm="SBO:0000247" id="M_MAM01982m" name="glycerate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C3H5O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01982m">
+            <rdf:Description rdf:about="#M_MAM01982m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/glyc__R"/>
@@ -54513,10 +54549,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01982e" sboTerm="SBO:0000247" id="MAM01982e" name="glycerate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C3H5O4">
+      <species metaid="M_MAM01982e" sboTerm="SBO:0000247" id="M_MAM01982e" name="glycerate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C3H5O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01982e">
+            <rdf:Description rdf:about="#M_MAM01982e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/glyc__R"/>
@@ -54532,10 +54568,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01983c" sboTerm="SBO:0000247" id="MAM01983c" name="glycerol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H8O3">
+      <species metaid="M_MAM01983c" sboTerm="SBO:0000247" id="M_MAM01983c" name="glycerol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H8O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01983c">
+            <rdf:Description rdf:about="#M_MAM01983c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/glyc"/>
@@ -54551,10 +54587,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01983m" sboTerm="SBO:0000247" id="MAM01983m" name="glycerol" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H8O3">
+      <species metaid="M_MAM01983m" sboTerm="SBO:0000247" id="M_MAM01983m" name="glycerol" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H8O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01983m">
+            <rdf:Description rdf:about="#M_MAM01983m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/glyc"/>
@@ -54570,10 +54606,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01983e" sboTerm="SBO:0000247" id="MAM01983e" name="glycerol" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H8O3">
+      <species metaid="M_MAM01983e" sboTerm="SBO:0000247" id="M_MAM01983e" name="glycerol" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H8O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01983e">
+            <rdf:Description rdf:about="#M_MAM01983e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/glyc"/>
@@ -54589,10 +54625,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01984e" sboTerm="SBO:0000247" id="MAM01984e" name="glycerone" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H6O3">
+      <species metaid="M_MAM01984e" sboTerm="SBO:0000247" id="M_MAM01984e" name="glycerone" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H6O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01984e">
+            <rdf:Description rdf:about="#M_MAM01984e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dha"/>
@@ -54608,10 +54644,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01985c" sboTerm="SBO:0000247" id="MAM01985c" name="glycinamide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C2H7N2O">
+      <species metaid="M_MAM01985c" sboTerm="SBO:0000247" id="M_MAM01985c" name="glycinamide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C2H7N2O">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01985c">
+            <rdf:Description rdf:about="#M_MAM01985c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM18177"/>
@@ -54622,10 +54658,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01986c" sboTerm="SBO:0000247" id="MAM01986c" name="glycine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C2H5NO2">
+      <species metaid="M_MAM01986c" sboTerm="SBO:0000247" id="M_MAM01986c" name="glycine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C2H5NO2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01986c">
+            <rdf:Description rdf:about="#M_MAM01986c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/gly"/>
@@ -54642,10 +54678,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01986l" sboTerm="SBO:0000247" id="MAM01986l" name="glycine" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C2H5NO2">
+      <species metaid="M_MAM01986l" sboTerm="SBO:0000247" id="M_MAM01986l" name="glycine" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C2H5NO2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01986l">
+            <rdf:Description rdf:about="#M_MAM01986l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/gly"/>
@@ -54662,10 +54698,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01986m" sboTerm="SBO:0000247" id="MAM01986m" name="glycine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C2H5NO2">
+      <species metaid="M_MAM01986m" sboTerm="SBO:0000247" id="M_MAM01986m" name="glycine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C2H5NO2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01986m">
+            <rdf:Description rdf:about="#M_MAM01986m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/gly"/>
@@ -54682,10 +54718,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01986x" sboTerm="SBO:0000247" id="MAM01986x" name="glycine" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C2H5NO2">
+      <species metaid="M_MAM01986x" sboTerm="SBO:0000247" id="M_MAM01986x" name="glycine" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C2H5NO2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01986x">
+            <rdf:Description rdf:about="#M_MAM01986x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/gly"/>
@@ -54702,10 +54738,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01986e" sboTerm="SBO:0000247" id="MAM01986e" name="glycine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C2H5NO2">
+      <species metaid="M_MAM01986e" sboTerm="SBO:0000247" id="M_MAM01986e" name="glycine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C2H5NO2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01986e">
+            <rdf:Description rdf:about="#M_MAM01986e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/gly"/>
@@ -54722,10 +54758,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01987c" sboTerm="SBO:0000247" id="MAM01987c" name="glycochenodeoxycholate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C26H43NO5">
+      <species metaid="M_MAM01987c" sboTerm="SBO:0000247" id="M_MAM01987c" name="glycochenodeoxycholate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C26H43NO5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01987c">
+            <rdf:Description rdf:about="#M_MAM01987c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dgchol"/>
@@ -54742,10 +54778,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01987e" sboTerm="SBO:0000247" id="MAM01987e" name="glycochenodeoxycholate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C26H43NO5">
+      <species metaid="M_MAM01987e" sboTerm="SBO:0000247" id="M_MAM01987e" name="glycochenodeoxycholate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C26H43NO5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01987e">
+            <rdf:Description rdf:about="#M_MAM01987e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dgchol"/>
@@ -54762,10 +54798,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01988c" sboTerm="SBO:0000247" id="MAM01988c" name="glycocholate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C26H43NO6">
+      <species metaid="M_MAM01988c" sboTerm="SBO:0000247" id="M_MAM01988c" name="glycocholate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C26H43NO6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01988c">
+            <rdf:Description rdf:about="#M_MAM01988c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/gchola"/>
@@ -54783,10 +54819,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01988e" sboTerm="SBO:0000247" id="MAM01988e" name="glycocholate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C26H43NO6">
+      <species metaid="M_MAM01988e" sboTerm="SBO:0000247" id="M_MAM01988e" name="glycocholate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C26H43NO6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01988e">
+            <rdf:Description rdf:about="#M_MAM01988e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/gchola"/>
@@ -54804,10 +54840,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01989c" sboTerm="SBO:0000247" id="MAM01989c" name="glycodeoxycholate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C26H43NO5">
+      <species metaid="M_MAM01989c" sboTerm="SBO:0000247" id="M_MAM01989c" name="glycodeoxycholate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C26H43NO5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01989c">
+            <rdf:Description rdf:about="#M_MAM01989c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:27471"/>
@@ -54821,10 +54857,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM01989e" sboTerm="SBO:0000247" id="MAM01989e" name="glycodeoxycholate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C26H43NO5">
+      <species metaid="M_MAM01989e" sboTerm="SBO:0000247" id="M_MAM01989e" name="glycodeoxycholate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C26H43NO5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01989e">
+            <rdf:Description rdf:about="#M_MAM01989e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:27471"/>
@@ -54838,10 +54874,10 @@
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       </species>
-      <species metaid="MAM01990c" sboTerm="SBO:0000247" id="MAM01990c" name="glycogenin G11" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C1845H2835N455O583S14">
+      <species metaid="M_MAM01990c" sboTerm="SBO:0000247" id="M_MAM01990c" name="glycogenin G11" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C1845H2835N455O583S14">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01990c">
+            <rdf:Description rdf:about="#M_MAM01990c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/glygn1"/>
@@ -54853,10 +54889,10 @@
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         </annotation>
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-      <species metaid="MAM01991c" sboTerm="SBO:0000247" id="MAM01991c" name="glycogenin G4G4" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C1827H2805N455O568S14">
+      <species metaid="M_MAM01991c" sboTerm="SBO:0000247" id="M_MAM01991c" name="glycogenin G4G4" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C1827H2805N455O568S14">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01991c">
+            <rdf:Description rdf:about="#M_MAM01991c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dxtrn"/>
@@ -54868,10 +54904,10 @@
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         </annotation>
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-      <species metaid="MAM01992c" sboTerm="SBO:0000247" id="MAM01992c" name="glycogenin G4G7" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C1845H2835N455O583S14">
+      <species metaid="M_MAM01992c" sboTerm="SBO:0000247" id="M_MAM01992c" name="glycogenin G4G7" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C1845H2835N455O583S14">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01992c">
+            <rdf:Description rdf:about="#M_MAM01992c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/glygn2"/>
@@ -54883,10 +54919,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01993c" sboTerm="SBO:0000247" id="MAM01993c" name="glycogenin G7" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C1821H2795N455O563S14">
+      <species metaid="M_MAM01993c" sboTerm="SBO:0000247" id="M_MAM01993c" name="glycogenin G7" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C1821H2795N455O563S14">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01993c">
+            <rdf:Description rdf:about="#M_MAM01993c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/glygn3"/>
@@ -54898,10 +54934,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01994c" sboTerm="SBO:0000247" id="MAM01994c" name="glycogenin G7G1" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C1827H2805N455O568S14">
+      <species metaid="M_MAM01994c" sboTerm="SBO:0000247" id="M_MAM01994c" name="glycogenin G7G1" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C1827H2805N455O568S14">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01994c">
+            <rdf:Description rdf:about="#M_MAM01994c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM164816"/>
@@ -54912,10 +54948,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM01995c" sboTerm="SBO:0000247" id="MAM01995c" name="glycogenin G8" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C1827H2805N455O568S14">
+      <species metaid="M_MAM01995c" sboTerm="SBO:0000247" id="M_MAM01995c" name="glycogenin G8" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C1827H2805N455O568S14">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01995c">
+            <rdf:Description rdf:about="#M_MAM01995c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM12747"/>
@@ -54926,10 +54962,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01996c" sboTerm="SBO:0000247" id="MAM01996c" name="glycogenin" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C1779H2725N455O528S14">
+      <species metaid="M_MAM01996c" sboTerm="SBO:0000247" id="M_MAM01996c" name="glycogenin" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C1779H2725N455O528S14">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01996c">
+            <rdf:Description rdf:about="#M_MAM01996c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ggn"/>
@@ -54942,10 +54978,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01997c" sboTerm="SBO:0000247" id="MAM01997c" name="glycolaldehyde" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C2H4O2">
+      <species metaid="M_MAM01997c" sboTerm="SBO:0000247" id="M_MAM01997c" name="glycolaldehyde" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C2H4O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01997c">
+            <rdf:Description rdf:about="#M_MAM01997c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/gcald"/>
@@ -54961,10 +54997,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01997m" sboTerm="SBO:0000247" id="MAM01997m" name="glycolaldehyde" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C2H4O2">
+      <species metaid="M_MAM01997m" sboTerm="SBO:0000247" id="M_MAM01997m" name="glycolaldehyde" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C2H4O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01997m">
+            <rdf:Description rdf:about="#M_MAM01997m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/gcald"/>
@@ -54980,10 +55016,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01998c" sboTerm="SBO:0000247" id="MAM01998c" name="glycolate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C2H3O3">
+      <species metaid="M_MAM01998c" sboTerm="SBO:0000247" id="M_MAM01998c" name="glycolate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C2H3O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01998c">
+            <rdf:Description rdf:about="#M_MAM01998c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/glyclt"/>
@@ -54999,10 +55035,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01998m" sboTerm="SBO:0000247" id="MAM01998m" name="glycolate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C2H3O3">
+      <species metaid="M_MAM01998m" sboTerm="SBO:0000247" id="M_MAM01998m" name="glycolate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C2H3O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01998m">
+            <rdf:Description rdf:about="#M_MAM01998m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/glyclt"/>
@@ -55018,10 +55054,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01998x" sboTerm="SBO:0000247" id="MAM01998x" name="glycolate" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C2H3O3">
+      <species metaid="M_MAM01998x" sboTerm="SBO:0000247" id="M_MAM01998x" name="glycolate" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C2H3O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01998x">
+            <rdf:Description rdf:about="#M_MAM01998x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/glyclt"/>
@@ -55037,10 +55073,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01999c" sboTerm="SBO:0000247" id="MAM01999c" name="glycolipid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C56H99N2O30RCO">
+      <species metaid="M_MAM01999c" sboTerm="SBO:0000247" id="M_MAM01999c" name="glycolipid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C56H99N2O30RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01999c">
+            <rdf:Description rdf:about="#M_MAM01999c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM8835"/>
@@ -55051,10 +55087,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01999g" sboTerm="SBO:0000247" id="MAM01999g" name="glycolipid" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C56H99N2O30RCO">
+      <species metaid="M_MAM01999g" sboTerm="SBO:0000247" id="M_MAM01999g" name="glycolipid" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C56H99N2O30RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01999g">
+            <rdf:Description rdf:about="#M_MAM01999g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM8835"/>
@@ -55065,10 +55101,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01999e" sboTerm="SBO:0000247" id="MAM01999e" name="glycolipid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C56H99N2O30RCO">
+      <species metaid="M_MAM01999e" sboTerm="SBO:0000247" id="M_MAM01999e" name="glycolipid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C56H99N2O30RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01999e">
+            <rdf:Description rdf:about="#M_MAM01999e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM8835"/>
@@ -55079,10 +55115,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02000c" sboTerm="SBO:0000247" id="MAM02000c" name="glycolithocholate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C26H42NO4">
+      <species metaid="M_MAM02000c" sboTerm="SBO:0000247" id="M_MAM02000c" name="glycolithocholate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C26H42NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02000c">
+            <rdf:Description rdf:about="#M_MAM02000c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:37998"/>
@@ -55096,10 +55132,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02000e" sboTerm="SBO:0000247" id="MAM02000e" name="glycolithocholate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C26H42NO4">
+      <species metaid="M_MAM02000e" sboTerm="SBO:0000247" id="M_MAM02000e" name="glycolithocholate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C26H42NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02000e">
+            <rdf:Description rdf:about="#M_MAM02000e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:37998"/>
@@ -55113,10 +55149,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02001r" sboTerm="SBO:0000247" id="MAM02001r" name="glycophosphatidylinositol-(GPI)-anchored-protein-precursor" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="XY">
+      <species metaid="M_MAM02001r" sboTerm="SBO:0000247" id="M_MAM02001r" name="glycophosphatidylinositol-(GPI)-anchored-protein-precursor" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="XY">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02001r">
+            <rdf:Description rdf:about="#M_MAM02001r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pre_prot"/>
@@ -55128,10 +55164,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02001c" sboTerm="SBO:0000247" id="MAM02001c" name="glycophosphatidylinositol-(GPI)-anchored-protein-precursor" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="XY">
+      <species metaid="M_MAM02001c" sboTerm="SBO:0000247" id="M_MAM02001c" name="glycophosphatidylinositol-(GPI)-anchored-protein-precursor" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="XY">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02001c">
+            <rdf:Description rdf:about="#M_MAM02001c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pre_prot"/>
@@ -55143,10 +55179,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02001e" sboTerm="SBO:0000247" id="MAM02001e" name="glycophosphatidylinositol-(GPI)-anchored-protein-precursor" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="XY">
+      <species metaid="M_MAM02001e" sboTerm="SBO:0000247" id="M_MAM02001e" name="glycophosphatidylinositol-(GPI)-anchored-protein-precursor" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="XY">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02001e">
+            <rdf:Description rdf:about="#M_MAM02001e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pre_prot"/>
@@ -55158,10 +55194,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02004c" sboTerm="SBO:0000247" id="MAM02004c" name="glycoursodeoxycholate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C26H43NO5">
+      <species metaid="M_MAM02004c" sboTerm="SBO:0000247" id="M_MAM02004c" name="glycoursodeoxycholate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C26H43NO5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02004c">
+            <rdf:Description rdf:about="#M_MAM02004c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/hmdb/HMDB00708"/>
@@ -55173,10 +55209,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02004e" sboTerm="SBO:0000247" id="MAM02004e" name="glycoursodeoxycholate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C26H43NO5">
+      <species metaid="M_MAM02004e" sboTerm="SBO:0000247" id="M_MAM02004e" name="glycoursodeoxycholate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C26H43NO5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02004e">
+            <rdf:Description rdf:about="#M_MAM02004e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/hmdb/HMDB00708"/>
@@ -55188,10 +55224,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02005c" sboTerm="SBO:0000247" id="MAM02005c" name="glycylpeptide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H7N2O3R">
+      <species metaid="M_MAM02005c" sboTerm="SBO:0000247" id="M_MAM02005c" name="glycylpeptide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H7N2O3R">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02005c">
+            <rdf:Description rdf:about="#M_MAM02005c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:16462"/>
@@ -55204,10 +55240,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02006c" sboTerm="SBO:0000247" id="MAM02006c" name="glycyl-tRNA(gly)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C2H5NOR">
+      <species metaid="M_MAM02006c" sboTerm="SBO:0000247" id="M_MAM02006c" name="glycyl-tRNA(gly)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C2H5NOR">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02006c">
+            <rdf:Description rdf:about="#M_MAM02006c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:29156"/>
@@ -55220,10 +55256,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02007c" sboTerm="SBO:0000247" id="MAM02007c" name="glyoxalate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C2H1O3">
+      <species metaid="M_MAM02007c" sboTerm="SBO:0000247" id="M_MAM02007c" name="glyoxalate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C2H1O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02007c">
+            <rdf:Description rdf:about="#M_MAM02007c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/glx"/>
@@ -55239,10 +55275,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02007m" sboTerm="SBO:0000247" id="MAM02007m" name="glyoxalate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C2H1O3">
+      <species metaid="M_MAM02007m" sboTerm="SBO:0000247" id="M_MAM02007m" name="glyoxalate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C2H1O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02007m">
+            <rdf:Description rdf:about="#M_MAM02007m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/glx"/>
@@ -55258,10 +55294,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02007x" sboTerm="SBO:0000247" id="MAM02007x" name="glyoxalate" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C2H1O3">
+      <species metaid="M_MAM02007x" sboTerm="SBO:0000247" id="M_MAM02007x" name="glyoxalate" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C2H1O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02007x">
+            <rdf:Description rdf:about="#M_MAM02007x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/glx"/>
@@ -55277,10 +55313,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02008c" sboTerm="SBO:0000247" id="MAM02008c" name="GM1" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C56H95N3O31R">
+      <species metaid="M_MAM02008c" sboTerm="SBO:0000247" id="M_MAM02008c" name="GM1" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C56H95N3O31R">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02008c">
+            <rdf:Description rdf:about="#M_MAM02008c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/gm1_hs"/>
@@ -55296,10 +55332,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02008g" sboTerm="SBO:0000247" id="MAM02008g" name="GM1" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C56H95N3O31R">
+      <species metaid="M_MAM02008g" sboTerm="SBO:0000247" id="M_MAM02008g" name="GM1" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C56H95N3O31R">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02008g">
+            <rdf:Description rdf:about="#M_MAM02008g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/gm1_hs"/>
@@ -55315,10 +55351,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02008l" sboTerm="SBO:0000247" id="MAM02008l" name="GM1" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C56H95N3O31R">
+      <species metaid="M_MAM02008l" sboTerm="SBO:0000247" id="M_MAM02008l" name="GM1" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C56H95N3O31R">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02008l">
+            <rdf:Description rdf:about="#M_MAM02008l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/gm1_hs"/>
@@ -55334,10 +55370,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02009g" sboTerm="SBO:0000247" id="MAM02009g" name="GM1alpha" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C55H95N3O30RCO">
+      <species metaid="M_MAM02009g" sboTerm="SBO:0000247" id="M_MAM02009g" name="GM1alpha" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C55H95N3O30RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02009g">
+            <rdf:Description rdf:about="#M_MAM02009g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/gm1a_hs"/>
@@ -55349,10 +55385,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02010c" sboTerm="SBO:0000247" id="MAM02010c" name="GM1b" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C55H95N3O30RCO">
+      <species metaid="M_MAM02010c" sboTerm="SBO:0000247" id="M_MAM02010c" name="GM1b" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C55H95N3O30RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02010c">
+            <rdf:Description rdf:about="#M_MAM02010c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/gm1b_hs"/>
@@ -55365,10 +55401,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02010g" sboTerm="SBO:0000247" id="MAM02010g" name="GM1b" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C55H95N3O30RCO">
+      <species metaid="M_MAM02010g" sboTerm="SBO:0000247" id="M_MAM02010g" name="GM1b" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C55H95N3O30RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02010g">
+            <rdf:Description rdf:about="#M_MAM02010g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/gm1b_hs"/>
@@ -55381,10 +55417,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02011c" sboTerm="SBO:0000247" id="MAM02011c" name="GM2" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C50H85N3O26R">
+      <species metaid="M_MAM02011c" sboTerm="SBO:0000247" id="M_MAM02011c" name="GM2" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C50H85N3O26R">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02011c">
+            <rdf:Description rdf:about="#M_MAM02011c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/gm2_hs"/>
@@ -55401,10 +55437,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02011g" sboTerm="SBO:0000247" id="MAM02011g" name="GM2" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C50H85N3O26R">
+      <species metaid="M_MAM02011g" sboTerm="SBO:0000247" id="M_MAM02011g" name="GM2" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C50H85N3O26R">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02011g">
+            <rdf:Description rdf:about="#M_MAM02011g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/gm2_hs"/>
@@ -55421,10 +55457,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02011l" sboTerm="SBO:0000247" id="MAM02011l" name="GM2" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C50H85N3O26R">
+      <species metaid="M_MAM02011l" sboTerm="SBO:0000247" id="M_MAM02011l" name="GM2" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C50H85N3O26R">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02011l">
+            <rdf:Description rdf:about="#M_MAM02011l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/gm2_hs"/>
@@ -55441,10 +55477,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02012c" sboTerm="SBO:0000247" id="MAM02012c" name="GM2A" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C940H1502N232O275S12">
+      <species metaid="M_MAM02012c" sboTerm="SBO:0000247" id="M_MAM02012c" name="GM2A" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C940H1502N232O275S12">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02012c">
+            <rdf:Description rdf:about="#M_MAM02012c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/PROTEIN"/>
@@ -55455,10 +55491,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02012l" sboTerm="SBO:0000247" id="MAM02012l" name="GM2A" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C940H1502N232O275S12">
+      <species metaid="M_MAM02012l" sboTerm="SBO:0000247" id="M_MAM02012l" name="GM2A" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C940H1502N232O275S12">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02012l">
+            <rdf:Description rdf:about="#M_MAM02012l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/PROTEIN"/>
@@ -55469,10 +55505,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02013l" sboTerm="SBO:0000247" id="MAM02013l" name="GM2A-GM2" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C990H1587N235O301S12R">
+      <species metaid="M_MAM02013l" sboTerm="SBO:0000247" id="M_MAM02013l" name="GM2A-GM2" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C990H1587N235O301S12R">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02013l">
+            <rdf:Description rdf:about="#M_MAM02013l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M02013"/>
@@ -55482,10 +55518,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02014g" sboTerm="SBO:0000247" id="MAM02014g" name="GM2alpha" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C49H85N3O25RCO">
+      <species metaid="M_MAM02014g" sboTerm="SBO:0000247" id="M_MAM02014g" name="GM2alpha" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C49H85N3O25RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02014g">
+            <rdf:Description rdf:about="#M_MAM02014g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/gm2a_hs"/>
@@ -55497,10 +55533,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02015c" sboTerm="SBO:0000247" id="MAM02015c" name="GM3" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C41H72N2O20RCO">
+      <species metaid="M_MAM02015c" sboTerm="SBO:0000247" id="M_MAM02015c" name="GM3" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C41H72N2O20RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02015c">
+            <rdf:Description rdf:about="#M_MAM02015c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/gm3_hs"/>
@@ -55515,10 +55551,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02015l" sboTerm="SBO:0000247" id="MAM02015l" name="GM3" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C41H72N2O20RCO">
+      <species metaid="M_MAM02015l" sboTerm="SBO:0000247" id="M_MAM02015l" name="GM3" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C41H72N2O20RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02015l">
+            <rdf:Description rdf:about="#M_MAM02015l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/gm3_hs"/>
@@ -55533,10 +55569,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02016c" sboTerm="SBO:0000247" id="MAM02016c" name="GMP" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C10H12N5O8P">
+      <species metaid="M_MAM02016c" sboTerm="SBO:0000247" id="M_MAM02016c" name="GMP" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C10H12N5O8P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02016c">
+            <rdf:Description rdf:about="#M_MAM02016c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/gmp"/>
@@ -55551,10 +55587,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02016g" sboTerm="SBO:0000247" id="MAM02016g" name="GMP" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C10H12N5O8P">
+      <species metaid="M_MAM02016g" sboTerm="SBO:0000247" id="M_MAM02016g" name="GMP" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C10H12N5O8P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02016g">
+            <rdf:Description rdf:about="#M_MAM02016g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/gmp"/>
@@ -55569,10 +55605,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02016l" sboTerm="SBO:0000247" id="MAM02016l" name="GMP" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C10H12N5O8P">
+      <species metaid="M_MAM02016l" sboTerm="SBO:0000247" id="M_MAM02016l" name="GMP" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C10H12N5O8P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02016l">
+            <rdf:Description rdf:about="#M_MAM02016l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/gmp"/>
@@ -55587,10 +55623,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02016m" sboTerm="SBO:0000247" id="MAM02016m" name="GMP" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C10H12N5O8P">
+      <species metaid="M_MAM02016m" sboTerm="SBO:0000247" id="M_MAM02016m" name="GMP" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C10H12N5O8P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02016m">
+            <rdf:Description rdf:about="#M_MAM02016m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/gmp"/>
@@ -55605,10 +55641,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02016n" sboTerm="SBO:0000247" id="MAM02016n" name="GMP" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C10H12N5O8P">
+      <species metaid="M_MAM02016n" sboTerm="SBO:0000247" id="M_MAM02016n" name="GMP" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C10H12N5O8P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02016n">
+            <rdf:Description rdf:about="#M_MAM02016n">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/gmp"/>
@@ -55623,10 +55659,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02016e" sboTerm="SBO:0000247" id="MAM02016e" name="GMP" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C10H12N5O8P">
+      <species metaid="M_MAM02016e" sboTerm="SBO:0000247" id="M_MAM02016e" name="GMP" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C10H12N5O8P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02016e">
+            <rdf:Description rdf:about="#M_MAM02016e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/gmp"/>
@@ -55641,10 +55677,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02017c" sboTerm="SBO:0000247" id="MAM02017c" name="GO3P" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C19H37O6P">
+      <species metaid="M_MAM02017c" sboTerm="SBO:0000247" id="M_MAM02017c" name="GO3P" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C19H37O6P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02017c">
+            <rdf:Description rdf:about="#M_MAM02017c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/LMGP10070003"/>
@@ -55656,10 +55692,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02017x" sboTerm="SBO:0000247" id="MAM02017x" name="GO3P" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C19H37O6P">
+      <species metaid="M_MAM02017x" sboTerm="SBO:0000247" id="M_MAM02017x" name="GO3P" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C19H37O6P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02017x">
+            <rdf:Description rdf:about="#M_MAM02017x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/LMGP10070003"/>
@@ -55671,10 +55707,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02018c" sboTerm="SBO:0000247" id="MAM02018c" name="GP1c" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C99H159N7O62RCO">
+      <species metaid="M_MAM02018c" sboTerm="SBO:0000247" id="M_MAM02018c" name="GP1c" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C99H159N7O62RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02018c">
+            <rdf:Description rdf:about="#M_MAM02018c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/gp1c_hs"/>
@@ -55686,10 +55722,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02018g" sboTerm="SBO:0000247" id="MAM02018g" name="GP1c" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C99H159N7O62RCO">
+      <species metaid="M_MAM02018g" sboTerm="SBO:0000247" id="M_MAM02018g" name="GP1c" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C99H159N7O62RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02018g">
+            <rdf:Description rdf:about="#M_MAM02018g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/gp1c_hs"/>
@@ -55701,10 +55737,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02018e" sboTerm="SBO:0000247" id="MAM02018e" name="GP1c" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C99H159N7O62RCO">
+      <species metaid="M_MAM02018e" sboTerm="SBO:0000247" id="M_MAM02018e" name="GP1c" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C99H159N7O62RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02018e">
+            <rdf:Description rdf:about="#M_MAM02018e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/gp1c_hs"/>
@@ -55716,10 +55752,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02019c" sboTerm="SBO:0000247" id="MAM02019c" name="GP1calpha" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C99H159N7O62RCO">
+      <species metaid="M_MAM02019c" sboTerm="SBO:0000247" id="M_MAM02019c" name="GP1calpha" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C99H159N7O62RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02019c">
+            <rdf:Description rdf:about="#M_MAM02019c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/gp1calpha_hs"/>
@@ -55731,10 +55767,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02019g" sboTerm="SBO:0000247" id="MAM02019g" name="GP1calpha" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C99H159N7O62RCO">
+      <species metaid="M_MAM02019g" sboTerm="SBO:0000247" id="M_MAM02019g" name="GP1calpha" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C99H159N7O62RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02019g">
+            <rdf:Description rdf:about="#M_MAM02019g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/gp1calpha_hs"/>
@@ -55746,10 +55782,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02019e" sboTerm="SBO:0000247" id="MAM02019e" name="GP1calpha" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C99H159N7O62RCO">
+      <species metaid="M_MAM02019e" sboTerm="SBO:0000247" id="M_MAM02019e" name="GP1calpha" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C99H159N7O62RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02019e">
+            <rdf:Description rdf:about="#M_MAM02019e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/gp1calpha_hs"/>
@@ -55761,10 +55797,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02020r" sboTerm="SBO:0000247" id="MAM02020r" name="gpi heparan sulfate" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C57H106N4O42P4R2">
+      <species metaid="M_MAM02020r" sboTerm="SBO:0000247" id="M_MAM02020r" name="gpi heparan sulfate" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C57H106N4O42P4R2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02020r">
+            <rdf:Description rdf:about="#M_MAM02020r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/gpi_hs"/>
@@ -55776,10 +55812,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02021r" sboTerm="SBO:0000247" id="MAM02021r" name="gpi_prot heparan sulfate" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C57H106N4O42P4R2X">
+      <species metaid="M_MAM02021r" sboTerm="SBO:0000247" id="M_MAM02021r" name="gpi_prot heparan sulfate" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C57H106N4O42P4R2X">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02021r">
+            <rdf:Description rdf:about="#M_MAM02021r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/gpi_prot_hs"/>
@@ -55791,10 +55827,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02022r" sboTerm="SBO:0000247" id="MAM02022r" name="gpi_sig" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="Y">
+      <species metaid="M_MAM02022r" sboTerm="SBO:0000247" id="M_MAM02022r" name="gpi_sig" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="Y">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02022r">
+            <rdf:Description rdf:about="#M_MAM02022r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/gpi_sig"/>
@@ -55806,10 +55842,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02022c" sboTerm="SBO:0000247" id="MAM02022c" name="gpi_sig" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="Y">
+      <species metaid="M_MAM02022c" sboTerm="SBO:0000247" id="M_MAM02022c" name="gpi_sig" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="Y">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02022c">
+            <rdf:Description rdf:about="#M_MAM02022c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/gpi_sig"/>
@@ -55821,10 +55857,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02022e" sboTerm="SBO:0000247" id="MAM02022e" name="gpi_sig" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="Y">
+      <species metaid="M_MAM02022e" sboTerm="SBO:0000247" id="M_MAM02022e" name="gpi_sig" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="Y">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02022e">
+            <rdf:Description rdf:about="#M_MAM02022e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/gpi_sig"/>
@@ -55836,10 +55872,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02023c" sboTerm="SBO:0000247" id="MAM02023c" name="GQ1b" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C88H143N6O54RCO">
+      <species metaid="M_MAM02023c" sboTerm="SBO:0000247" id="M_MAM02023c" name="GQ1b" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C88H143N6O54RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02023c">
+            <rdf:Description rdf:about="#M_MAM02023c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/gq1b_hs"/>
@@ -55853,10 +55889,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02023g" sboTerm="SBO:0000247" id="MAM02023g" name="GQ1b" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C88H143N6O54RCO">
+      <species metaid="M_MAM02023g" sboTerm="SBO:0000247" id="M_MAM02023g" name="GQ1b" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C88H143N6O54RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02023g">
+            <rdf:Description rdf:about="#M_MAM02023g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/gq1b_hs"/>
@@ -55870,10 +55906,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02023e" sboTerm="SBO:0000247" id="MAM02023e" name="GQ1b" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C88H143N6O54RCO">
+      <species metaid="M_MAM02023e" sboTerm="SBO:0000247" id="M_MAM02023e" name="GQ1b" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C88H143N6O54RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02023e">
+            <rdf:Description rdf:about="#M_MAM02023e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/gq1b_hs"/>
@@ -55887,10 +55923,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02024c" sboTerm="SBO:0000247" id="MAM02024c" name="GQ1balpha" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C88H143N6O54RCO">
+      <species metaid="M_MAM02024c" sboTerm="SBO:0000247" id="M_MAM02024c" name="GQ1balpha" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C88H143N6O54RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02024c">
+            <rdf:Description rdf:about="#M_MAM02024c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/gq1balpha_hs"/>
@@ -55903,10 +55939,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02024g" sboTerm="SBO:0000247" id="MAM02024g" name="GQ1balpha" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C88H143N6O54RCO">
+      <species metaid="M_MAM02024g" sboTerm="SBO:0000247" id="M_MAM02024g" name="GQ1balpha" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C88H143N6O54RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02024g">
+            <rdf:Description rdf:about="#M_MAM02024g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/gq1balpha_hs"/>
@@ -55919,10 +55955,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02024e" sboTerm="SBO:0000247" id="MAM02024e" name="GQ1balpha" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C88H143N6O54RCO">
+      <species metaid="M_MAM02024e" sboTerm="SBO:0000247" id="M_MAM02024e" name="GQ1balpha" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C88H143N6O54RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02024e">
+            <rdf:Description rdf:about="#M_MAM02024e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/gq1balpha_hs"/>
@@ -55935,10 +55971,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02026c" sboTerm="SBO:0000247" id="MAM02026c" name="GSH" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H16N3O6S">
+      <species metaid="M_MAM02026c" sboTerm="SBO:0000247" id="M_MAM02026c" name="GSH" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H16N3O6S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02026c">
+            <rdf:Description rdf:about="#M_MAM02026c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/gthrd"/>
@@ -55954,10 +55990,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02026m" sboTerm="SBO:0000247" id="MAM02026m" name="GSH" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H16N3O6S">
+      <species metaid="M_MAM02026m" sboTerm="SBO:0000247" id="M_MAM02026m" name="GSH" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H16N3O6S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02026m">
+            <rdf:Description rdf:about="#M_MAM02026m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/gthrd"/>
@@ -55973,10 +56009,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02026x" sboTerm="SBO:0000247" id="MAM02026x" name="GSH" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H16N3O6S">
+      <species metaid="M_MAM02026x" sboTerm="SBO:0000247" id="M_MAM02026x" name="GSH" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H16N3O6S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02026x">
+            <rdf:Description rdf:about="#M_MAM02026x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/gthrd"/>
@@ -55992,10 +56028,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02026r" sboTerm="SBO:0000247" id="MAM02026r" name="GSH" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H16N3O6S">
+      <species metaid="M_MAM02026r" sboTerm="SBO:0000247" id="M_MAM02026r" name="GSH" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H16N3O6S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02026r">
+            <rdf:Description rdf:about="#M_MAM02026r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/gthrd"/>
@@ -56011,10 +56047,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02026e" sboTerm="SBO:0000247" id="MAM02026e" name="GSH" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H16N3O6S">
+      <species metaid="M_MAM02026e" sboTerm="SBO:0000247" id="M_MAM02026e" name="GSH" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H16N3O6S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02026e">
+            <rdf:Description rdf:about="#M_MAM02026e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/gthrd"/>
@@ -56030,10 +56066,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02027c" sboTerm="SBO:0000247" id="MAM02027c" name="GSSG" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C20H30N6O12S2">
+      <species metaid="M_MAM02027c" sboTerm="SBO:0000247" id="M_MAM02027c" name="GSSG" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C20H30N6O12S2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02027c">
+            <rdf:Description rdf:about="#M_MAM02027c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/gthox"/>
@@ -56049,10 +56085,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02027m" sboTerm="SBO:0000247" id="MAM02027m" name="GSSG" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C20H30N6O12S2">
+      <species metaid="M_MAM02027m" sboTerm="SBO:0000247" id="M_MAM02027m" name="GSSG" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C20H30N6O12S2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02027m">
+            <rdf:Description rdf:about="#M_MAM02027m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/gthox"/>
@@ -56068,10 +56104,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02027r" sboTerm="SBO:0000247" id="MAM02027r" name="GSSG" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C20H30N6O12S2">
+      <species metaid="M_MAM02027r" sboTerm="SBO:0000247" id="M_MAM02027r" name="GSSG" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C20H30N6O12S2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02027r">
+            <rdf:Description rdf:about="#M_MAM02027r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/gthox"/>
@@ -56087,10 +56123,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02027e" sboTerm="SBO:0000247" id="MAM02027e" name="GSSG" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C20H30N6O12S2">
+      <species metaid="M_MAM02027e" sboTerm="SBO:0000247" id="M_MAM02027e" name="GSSG" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C20H30N6O12S2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02027e">
+            <rdf:Description rdf:about="#M_MAM02027e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/gthox"/>
@@ -56106,10 +56142,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02028c" sboTerm="SBO:0000247" id="MAM02028c" name="GT1a" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C77H127N5O46RCO">
+      <species metaid="M_MAM02028c" sboTerm="SBO:0000247" id="M_MAM02028c" name="GT1a" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C77H127N5O46RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02028c">
+            <rdf:Description rdf:about="#M_MAM02028c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/gt1a_hs"/>
@@ -56123,10 +56159,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02028g" sboTerm="SBO:0000247" id="MAM02028g" name="GT1a" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C77H127N5O46RCO">
+      <species metaid="M_MAM02028g" sboTerm="SBO:0000247" id="M_MAM02028g" name="GT1a" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C77H127N5O46RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02028g">
+            <rdf:Description rdf:about="#M_MAM02028g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/gt1a_hs"/>
@@ -56140,10 +56176,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02028e" sboTerm="SBO:0000247" id="MAM02028e" name="GT1a" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C77H127N5O46RCO">
+      <species metaid="M_MAM02028e" sboTerm="SBO:0000247" id="M_MAM02028e" name="GT1a" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C77H127N5O46RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02028e">
+            <rdf:Description rdf:about="#M_MAM02028e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/gt1a_hs"/>
@@ -56157,10 +56193,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02029c" sboTerm="SBO:0000247" id="MAM02029c" name="GT1aalpha" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C77H127N5O46RCO">
+      <species metaid="M_MAM02029c" sboTerm="SBO:0000247" id="M_MAM02029c" name="GT1aalpha" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C77H127N5O46RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02029c">
+            <rdf:Description rdf:about="#M_MAM02029c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/gt1alpha_hs"/>
@@ -56173,10 +56209,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02029g" sboTerm="SBO:0000247" id="MAM02029g" name="GT1aalpha" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C77H127N5O46RCO">
+      <species metaid="M_MAM02029g" sboTerm="SBO:0000247" id="M_MAM02029g" name="GT1aalpha" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C77H127N5O46RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02029g">
+            <rdf:Description rdf:about="#M_MAM02029g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/gt1alpha_hs"/>
@@ -56189,10 +56225,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02030c" sboTerm="SBO:0000247" id="MAM02030c" name="GT1b" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C77H127N5O46RCO">
+      <species metaid="M_MAM02030c" sboTerm="SBO:0000247" id="M_MAM02030c" name="GT1b" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C77H127N5O46RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02030c">
+            <rdf:Description rdf:about="#M_MAM02030c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/gt1b_hs"/>
@@ -56206,10 +56242,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02030g" sboTerm="SBO:0000247" id="MAM02030g" name="GT1b" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C77H127N5O46RCO">
+      <species metaid="M_MAM02030g" sboTerm="SBO:0000247" id="M_MAM02030g" name="GT1b" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C77H127N5O46RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02030g">
+            <rdf:Description rdf:about="#M_MAM02030g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/gt1b_hs"/>
@@ -56223,10 +56259,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02031c" sboTerm="SBO:0000247" id="MAM02031c" name="GT1c" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C77H127N5O46RCO">
+      <species metaid="M_MAM02031c" sboTerm="SBO:0000247" id="M_MAM02031c" name="GT1c" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C77H127N5O46RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02031c">
+            <rdf:Description rdf:about="#M_MAM02031c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/gt1c_hs"/>
@@ -56239,10 +56275,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02031g" sboTerm="SBO:0000247" id="MAM02031g" name="GT1c" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C77H127N5O46RCO">
+      <species metaid="M_MAM02031g" sboTerm="SBO:0000247" id="M_MAM02031g" name="GT1c" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C77H127N5O46RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02031g">
+            <rdf:Description rdf:about="#M_MAM02031g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/gt1c_hs"/>
@@ -56255,10 +56291,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02032c" sboTerm="SBO:0000247" id="MAM02032c" name="GT2" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C71H117N5O41RCO">
+      <species metaid="M_MAM02032c" sboTerm="SBO:0000247" id="M_MAM02032c" name="GT2" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C71H117N5O41RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02032c">
+            <rdf:Description rdf:about="#M_MAM02032c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/gt2_hs"/>
@@ -56271,10 +56307,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02032g" sboTerm="SBO:0000247" id="MAM02032g" name="GT2" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C71H117N5O41RCO">
+      <species metaid="M_MAM02032g" sboTerm="SBO:0000247" id="M_MAM02032g" name="GT2" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C71H117N5O41RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02032g">
+            <rdf:Description rdf:about="#M_MAM02032g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/gt2_hs"/>
@@ -56287,10 +56323,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02033c" sboTerm="SBO:0000247" id="MAM02033c" name="GT3" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C63H104N4O36RCO">
+      <species metaid="M_MAM02033c" sboTerm="SBO:0000247" id="M_MAM02033c" name="GT3" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C63H104N4O36RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02033c">
+            <rdf:Description rdf:about="#M_MAM02033c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/gt3_hs"/>
@@ -56304,10 +56340,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02033g" sboTerm="SBO:0000247" id="MAM02033g" name="GT3" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C63H104N4O36RCO">
+      <species metaid="M_MAM02033g" sboTerm="SBO:0000247" id="M_MAM02033g" name="GT3" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C63H104N4O36RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02033g">
+            <rdf:Description rdf:about="#M_MAM02033g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/gt3_hs"/>
@@ -56321,10 +56357,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02034c" sboTerm="SBO:0000247" id="MAM02034c" name="GTP" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C10H12N5O14P3">
+      <species metaid="M_MAM02034c" sboTerm="SBO:0000247" id="M_MAM02034c" name="GTP" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C10H12N5O14P3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02034c">
+            <rdf:Description rdf:about="#M_MAM02034c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/gtp"/>
@@ -56340,10 +56376,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02034m" sboTerm="SBO:0000247" id="MAM02034m" name="GTP" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C10H12N5O14P3">
+      <species metaid="M_MAM02034m" sboTerm="SBO:0000247" id="M_MAM02034m" name="GTP" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C10H12N5O14P3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02034m">
+            <rdf:Description rdf:about="#M_MAM02034m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/gtp"/>
@@ -56359,10 +56395,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02034n" sboTerm="SBO:0000247" id="MAM02034n" name="GTP" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C10H12N5O14P3">
+      <species metaid="M_MAM02034n" sboTerm="SBO:0000247" id="M_MAM02034n" name="GTP" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C10H12N5O14P3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02034n">
+            <rdf:Description rdf:about="#M_MAM02034n">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/gtp"/>
@@ -56378,10 +56414,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02034e" sboTerm="SBO:0000247" id="MAM02034e" name="GTP" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C10H12N5O14P3">
+      <species metaid="M_MAM02034e" sboTerm="SBO:0000247" id="M_MAM02034e" name="GTP" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C10H12N5O14P3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02034e">
+            <rdf:Description rdf:about="#M_MAM02034e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/gtp"/>
@@ -56397,10 +56433,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02035c" sboTerm="SBO:0000247" id="MAM02035c" name="guanidine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="CH5N3">
+      <species metaid="M_MAM02035c" sboTerm="SBO:0000247" id="M_MAM02035c" name="guanidine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="CH5N3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02035c">
+            <rdf:Description rdf:about="#M_MAM02035c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:42820"/>
@@ -56413,10 +56449,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02035e" sboTerm="SBO:0000247" id="MAM02035e" name="guanidine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="CH5N3">
+      <species metaid="M_MAM02035e" sboTerm="SBO:0000247" id="M_MAM02035e" name="guanidine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="CH5N3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02035e">
+            <rdf:Description rdf:about="#M_MAM02035e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:42820"/>
@@ -56429,10 +56465,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02036c" sboTerm="SBO:0000247" id="MAM02036c" name="guanidinoacetate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H7N3O2">
+      <species metaid="M_MAM02036c" sboTerm="SBO:0000247" id="M_MAM02036c" name="guanidinoacetate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H7N3O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02036c">
+            <rdf:Description rdf:about="#M_MAM02036c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/gudac"/>
@@ -56450,10 +56486,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02037c" sboTerm="SBO:0000247" id="MAM02037c" name="guanine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H5N5O">
+      <species metaid="M_MAM02037c" sboTerm="SBO:0000247" id="M_MAM02037c" name="guanine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H5N5O">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02037c">
+            <rdf:Description rdf:about="#M_MAM02037c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/gua"/>
@@ -56469,10 +56505,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02037e" sboTerm="SBO:0000247" id="MAM02037e" name="guanine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H5N5O">
+      <species metaid="M_MAM02037e" sboTerm="SBO:0000247" id="M_MAM02037e" name="guanine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H5N5O">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02037e">
+            <rdf:Description rdf:about="#M_MAM02037e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/gua"/>
@@ -56488,10 +56524,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02038c" sboTerm="SBO:0000247" id="MAM02038c" name="guanosine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H13N5O5">
+      <species metaid="M_MAM02038c" sboTerm="SBO:0000247" id="M_MAM02038c" name="guanosine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H13N5O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02038c">
+            <rdf:Description rdf:about="#M_MAM02038c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/gsn"/>
@@ -56507,10 +56543,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02038l" sboTerm="SBO:0000247" id="MAM02038l" name="guanosine" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H13N5O5">
+      <species metaid="M_MAM02038l" sboTerm="SBO:0000247" id="M_MAM02038l" name="guanosine" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H13N5O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02038l">
+            <rdf:Description rdf:about="#M_MAM02038l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/gsn"/>
@@ -56526,10 +56562,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02038m" sboTerm="SBO:0000247" id="MAM02038m" name="guanosine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H13N5O5">
+      <species metaid="M_MAM02038m" sboTerm="SBO:0000247" id="M_MAM02038m" name="guanosine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H13N5O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02038m">
+            <rdf:Description rdf:about="#M_MAM02038m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/gsn"/>
@@ -56545,10 +56581,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02038e" sboTerm="SBO:0000247" id="MAM02038e" name="guanosine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H13N5O5">
+      <species metaid="M_MAM02038e" sboTerm="SBO:0000247" id="M_MAM02038e" name="guanosine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H13N5O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02038e">
+            <rdf:Description rdf:about="#M_MAM02038e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/gsn"/>
@@ -56564,10 +56600,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02039c" sboTerm="SBO:0000247" id="MAM02039c" name="H+" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="H">
+      <species metaid="M_MAM02039c" sboTerm="SBO:0000247" id="M_MAM02039c" name="H+" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="H">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02039c">
+            <rdf:Description rdf:about="#M_MAM02039c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/h"/>
@@ -56582,10 +56618,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02039g" sboTerm="SBO:0000247" id="MAM02039g" name="H+" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="H">
+      <species metaid="M_MAM02039g" sboTerm="SBO:0000247" id="M_MAM02039g" name="H+" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="H">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02039g">
+            <rdf:Description rdf:about="#M_MAM02039g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/h"/>
@@ -56600,10 +56636,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02039l" sboTerm="SBO:0000247" id="MAM02039l" name="H+" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="H">
+      <species metaid="M_MAM02039l" sboTerm="SBO:0000247" id="M_MAM02039l" name="H+" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="H">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02039l">
+            <rdf:Description rdf:about="#M_MAM02039l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/h"/>
@@ -56618,10 +56654,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02039m" sboTerm="SBO:0000247" id="MAM02039m" name="H+" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="H">
+      <species metaid="M_MAM02039m" sboTerm="SBO:0000247" id="M_MAM02039m" name="H+" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="H">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02039m">
+            <rdf:Description rdf:about="#M_MAM02039m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/h"/>
@@ -56636,10 +56672,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02039n" sboTerm="SBO:0000247" id="MAM02039n" name="H+" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="H">
+      <species metaid="M_MAM02039n" sboTerm="SBO:0000247" id="M_MAM02039n" name="H+" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="H">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02039n">
+            <rdf:Description rdf:about="#M_MAM02039n">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/h"/>
@@ -56654,10 +56690,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02039x" sboTerm="SBO:0000247" id="MAM02039x" name="H+" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="H">
+      <species metaid="M_MAM02039x" sboTerm="SBO:0000247" id="M_MAM02039x" name="H+" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="H">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02039x">
+            <rdf:Description rdf:about="#M_MAM02039x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/h"/>
@@ -56672,10 +56708,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02039r" sboTerm="SBO:0000247" id="MAM02039r" name="H+" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="H">
+      <species metaid="M_MAM02039r" sboTerm="SBO:0000247" id="M_MAM02039r" name="H+" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="H">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02039r">
+            <rdf:Description rdf:about="#M_MAM02039r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/h"/>
@@ -56690,10 +56726,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02039e" sboTerm="SBO:0000247" id="MAM02039e" name="H+" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="H">
+      <species metaid="M_MAM02039e" sboTerm="SBO:0000247" id="M_MAM02039e" name="H+" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="H">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02039e">
+            <rdf:Description rdf:about="#M_MAM02039e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/h"/>
@@ -56708,10 +56744,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02040c" sboTerm="SBO:0000247" id="MAM02040c" name="H2O" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="H2O">
+      <species metaid="M_MAM02040c" sboTerm="SBO:0000247" id="M_MAM02040c" name="H2O" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="H2O">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02040c">
+            <rdf:Description rdf:about="#M_MAM02040c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/h2o"/>
@@ -56728,10 +56764,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02040g" sboTerm="SBO:0000247" id="MAM02040g" name="H2O" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="H2O">
+      <species metaid="M_MAM02040g" sboTerm="SBO:0000247" id="M_MAM02040g" name="H2O" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="H2O">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02040g">
+            <rdf:Description rdf:about="#M_MAM02040g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/h2o"/>
@@ -56748,10 +56784,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02040l" sboTerm="SBO:0000247" id="MAM02040l" name="H2O" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="H2O">
+      <species metaid="M_MAM02040l" sboTerm="SBO:0000247" id="M_MAM02040l" name="H2O" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="H2O">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02040l">
+            <rdf:Description rdf:about="#M_MAM02040l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/h2o"/>
@@ -56768,10 +56804,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02040m" sboTerm="SBO:0000247" id="MAM02040m" name="H2O" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="H2O">
+      <species metaid="M_MAM02040m" sboTerm="SBO:0000247" id="M_MAM02040m" name="H2O" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="H2O">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02040m">
+            <rdf:Description rdf:about="#M_MAM02040m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/h2o"/>
@@ -56788,10 +56824,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02040n" sboTerm="SBO:0000247" id="MAM02040n" name="H2O" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="H2O">
+      <species metaid="M_MAM02040n" sboTerm="SBO:0000247" id="M_MAM02040n" name="H2O" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="H2O">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02040n">
+            <rdf:Description rdf:about="#M_MAM02040n">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/h2o"/>
@@ -56808,10 +56844,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02040x" sboTerm="SBO:0000247" id="MAM02040x" name="H2O" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="H2O">
+      <species metaid="M_MAM02040x" sboTerm="SBO:0000247" id="M_MAM02040x" name="H2O" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="H2O">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02040x">
+            <rdf:Description rdf:about="#M_MAM02040x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/h2o"/>
@@ -56828,10 +56864,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02040r" sboTerm="SBO:0000247" id="MAM02040r" name="H2O" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="H2O">
+      <species metaid="M_MAM02040r" sboTerm="SBO:0000247" id="M_MAM02040r" name="H2O" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="H2O">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02040r">
+            <rdf:Description rdf:about="#M_MAM02040r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/h2o"/>
@@ -56848,10 +56884,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02040e" sboTerm="SBO:0000247" id="MAM02040e" name="H2O" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="H2O">
+      <species metaid="M_MAM02040e" sboTerm="SBO:0000247" id="M_MAM02040e" name="H2O" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="H2O">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02040e">
+            <rdf:Description rdf:about="#M_MAM02040e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/h2o"/>
@@ -56868,10 +56904,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02041c" sboTerm="SBO:0000247" id="MAM02041c" name="H2O2" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="H2O2">
+      <species metaid="M_MAM02041c" sboTerm="SBO:0000247" id="M_MAM02041c" name="H2O2" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="H2O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02041c">
+            <rdf:Description rdf:about="#M_MAM02041c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/h2o2"/>
@@ -56887,10 +56923,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02041l" sboTerm="SBO:0000247" id="MAM02041l" name="H2O2" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="H2O2">
+      <species metaid="M_MAM02041l" sboTerm="SBO:0000247" id="M_MAM02041l" name="H2O2" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="H2O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02041l">
+            <rdf:Description rdf:about="#M_MAM02041l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/h2o2"/>
@@ -56906,10 +56942,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02041m" sboTerm="SBO:0000247" id="MAM02041m" name="H2O2" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="H2O2">
+      <species metaid="M_MAM02041m" sboTerm="SBO:0000247" id="M_MAM02041m" name="H2O2" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="H2O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02041m">
+            <rdf:Description rdf:about="#M_MAM02041m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/h2o2"/>
@@ -56925,10 +56961,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02041n" sboTerm="SBO:0000247" id="MAM02041n" name="H2O2" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="H2O2">
+      <species metaid="M_MAM02041n" sboTerm="SBO:0000247" id="M_MAM02041n" name="H2O2" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="H2O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02041n">
+            <rdf:Description rdf:about="#M_MAM02041n">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/h2o2"/>
@@ -56944,10 +56980,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02041x" sboTerm="SBO:0000247" id="MAM02041x" name="H2O2" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="H2O2">
+      <species metaid="M_MAM02041x" sboTerm="SBO:0000247" id="M_MAM02041x" name="H2O2" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="H2O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02041x">
+            <rdf:Description rdf:about="#M_MAM02041x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/h2o2"/>
@@ -56963,10 +56999,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02041r" sboTerm="SBO:0000247" id="MAM02041r" name="H2O2" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="H2O2">
+      <species metaid="M_MAM02041r" sboTerm="SBO:0000247" id="M_MAM02041r" name="H2O2" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="H2O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02041r">
+            <rdf:Description rdf:about="#M_MAM02041r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/h2o2"/>
@@ -56982,10 +57018,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02041e" sboTerm="SBO:0000247" id="MAM02041e" name="H2O2" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="H2O2">
+      <species metaid="M_MAM02041e" sboTerm="SBO:0000247" id="M_MAM02041e" name="H2O2" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="H2O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02041e">
+            <rdf:Description rdf:about="#M_MAM02041e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/h2o2"/>
@@ -57001,10 +57037,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02042c" sboTerm="SBO:0000247" id="MAM02042c" name="H2S" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="HS">
+      <species metaid="M_MAM02042c" sboTerm="SBO:0000247" id="M_MAM02042c" name="H2S" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="HS">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02042c">
+            <rdf:Description rdf:about="#M_MAM02042c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:16136"/>
@@ -57019,10 +57055,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02042e" sboTerm="SBO:0000247" id="MAM02042e" name="H2S" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="HS">
+      <species metaid="M_MAM02042e" sboTerm="SBO:0000247" id="M_MAM02042e" name="H2S" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="HS">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02042e">
+            <rdf:Description rdf:about="#M_MAM02042e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:16136"/>
@@ -57037,10 +57073,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02043c" sboTerm="SBO:0000247" id="MAM02043c" name="H2S2O3" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="HO3S2">
+      <species metaid="M_MAM02043c" sboTerm="SBO:0000247" id="M_MAM02043c" name="H2S2O3" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="HO3S2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02043c">
+            <rdf:Description rdf:about="#M_MAM02043c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:16094"/>
@@ -57055,10 +57091,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02044c" sboTerm="SBO:0000247" id="MAM02044c" name="haptoglobin" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C2019H3126N540O606S17">
+      <species metaid="M_MAM02044c" sboTerm="SBO:0000247" id="M_MAM02044c" name="haptoglobin" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C2019H3126N540O606S17">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02044c">
+            <rdf:Description rdf:about="#M_MAM02044c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/PROTEIN"/>
@@ -57069,10 +57105,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02044l" sboTerm="SBO:0000247" id="MAM02044l" name="haptoglobin" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C2019H3126N540O606S17">
+      <species metaid="M_MAM02044l" sboTerm="SBO:0000247" id="M_MAM02044l" name="haptoglobin" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C2019H3126N540O606S17">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02044l">
+            <rdf:Description rdf:about="#M_MAM02044l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/PROTEIN"/>
@@ -57083,10 +57119,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02044e" sboTerm="SBO:0000247" id="MAM02044e" name="haptoglobin" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C2019H3126N540O606S17">
+      <species metaid="M_MAM02044e" sboTerm="SBO:0000247" id="M_MAM02044e" name="haptoglobin" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C2019H3126N540O606S17">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02044e">
+            <rdf:Description rdf:about="#M_MAM02044e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/PROTEIN"/>
@@ -57097,10 +57133,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02045c" sboTerm="SBO:0000247" id="MAM02045c" name="harman" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C12H10N2">
+      <species metaid="M_MAM02045c" sboTerm="SBO:0000247" id="M_MAM02045c" name="harman" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C12H10N2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02045c">
+            <rdf:Description rdf:about="#M_MAM02045c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:5623"/>
@@ -57114,10 +57150,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02046c" sboTerm="SBO:0000247" id="MAM02046c" name="HCO3-" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="CHO3">
+      <species metaid="M_MAM02046c" sboTerm="SBO:0000247" id="M_MAM02046c" name="HCO3-" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="CHO3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02046c">
+            <rdf:Description rdf:about="#M_MAM02046c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hco3"/>
@@ -57133,10 +57169,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02046m" sboTerm="SBO:0000247" id="MAM02046m" name="HCO3-" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="CHO3">
+      <species metaid="M_MAM02046m" sboTerm="SBO:0000247" id="M_MAM02046m" name="HCO3-" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="CHO3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02046m">
+            <rdf:Description rdf:about="#M_MAM02046m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hco3"/>
@@ -57152,10 +57188,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02046e" sboTerm="SBO:0000247" id="MAM02046e" name="HCO3-" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="CHO3">
+      <species metaid="M_MAM02046e" sboTerm="SBO:0000247" id="M_MAM02046e" name="HCO3-" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="CHO3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02046e">
+            <rdf:Description rdf:about="#M_MAM02046e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hco3"/>
@@ -57171,10 +57207,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02047l" sboTerm="SBO:0000247" id="MAM02047l" name="HDL remnant" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5849H10226N1057O2508P220S8R365">
+      <species metaid="M_MAM02047l" sboTerm="SBO:0000247" id="M_MAM02047l" name="HDL remnant" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5849H10226N1057O2508P220S8R365">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02047l">
+            <rdf:Description rdf:about="#M_MAM02047l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M02047"/>
@@ -57184,10 +57220,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02047e" sboTerm="SBO:0000247" id="MAM02047e" name="HDL remnant" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5849H10226N1057O2508P220S8R365">
+      <species metaid="M_MAM02047e" sboTerm="SBO:0000247" id="M_MAM02047e" name="HDL remnant" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5849H10226N1057O2508P220S8R365">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02047e">
+            <rdf:Description rdf:about="#M_MAM02047e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M02047"/>
@@ -57197,10 +57233,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02048r" sboTerm="SBO:0000247" id="MAM02048r" name="HDL" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10869H18346N1057O2848P220S8R525">
+      <species metaid="M_MAM02048r" sboTerm="SBO:0000247" id="M_MAM02048r" name="HDL" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10869H18346N1057O2848P220S8R525">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02048r">
+            <rdf:Description rdf:about="#M_MAM02048r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM56508"/>
@@ -57211,10 +57247,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02048e" sboTerm="SBO:0000247" id="MAM02048e" name="HDL" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10869H18346N1057O2848P220S8R525">
+      <species metaid="M_MAM02048e" sboTerm="SBO:0000247" id="M_MAM02048e" name="HDL" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10869H18346N1057O2848P220S8R525">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02048e">
+            <rdf:Description rdf:about="#M_MAM02048e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM56508"/>
@@ -57225,10 +57261,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02049c" sboTerm="SBO:0000247" id="MAM02049c" name="heme" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C34H30FeN4O4">
+      <species metaid="M_MAM02049c" sboTerm="SBO:0000247" id="M_MAM02049c" name="heme" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C34H30FeN4O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02049c">
+            <rdf:Description rdf:about="#M_MAM02049c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pheme"/>
@@ -57242,10 +57278,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02049m" sboTerm="SBO:0000247" id="MAM02049m" name="heme" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C34H30FeN4O4">
+      <species metaid="M_MAM02049m" sboTerm="SBO:0000247" id="M_MAM02049m" name="heme" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C34H30FeN4O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02049m">
+            <rdf:Description rdf:about="#M_MAM02049m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pheme"/>
@@ -57259,10 +57295,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02049e" sboTerm="SBO:0000247" id="MAM02049e" name="heme" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C34H30FeN4O4">
+      <species metaid="M_MAM02049e" sboTerm="SBO:0000247" id="M_MAM02049e" name="heme" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C34H30FeN4O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02049e">
+            <rdf:Description rdf:about="#M_MAM02049e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pheme"/>
@@ -57276,10 +57312,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02050c" sboTerm="SBO:0000247" id="MAM02050c" name="hemoglobin" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C91H118N4O6Fe">
+      <species metaid="M_MAM02050c" sboTerm="SBO:0000247" id="M_MAM02050c" name="hemoglobin" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C91H118N4O6Fe">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02050c">
+            <rdf:Description rdf:about="#M_MAM02050c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:5656"/>
@@ -57292,10 +57328,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02050e" sboTerm="SBO:0000247" id="MAM02050e" name="hemoglobin" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C91H118N4O6Fe">
+      <species metaid="M_MAM02050e" sboTerm="SBO:0000247" id="M_MAM02050e" name="hemoglobin" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C91H118N4O6Fe">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02050e">
+            <rdf:Description rdf:about="#M_MAM02050e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:5656"/>
@@ -57308,10 +57344,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02051c" sboTerm="SBO:0000247" id="MAM02051c" name="heneicosanoylcarnitine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C28H55NO4">
+      <species metaid="M_MAM02051c" sboTerm="SBO:0000247" id="M_MAM02051c" name="heneicosanoylcarnitine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C28H55NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02051c">
+            <rdf:Description rdf:about="#M_MAM02051c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M02051"/>
@@ -57321,10 +57357,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02051m" sboTerm="SBO:0000247" id="MAM02051m" name="heneicosanoylcarnitine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C28H55NO4">
+      <species metaid="M_MAM02051m" sboTerm="SBO:0000247" id="M_MAM02051m" name="heneicosanoylcarnitine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C28H55NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02051m">
+            <rdf:Description rdf:about="#M_MAM02051m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M02051"/>
@@ -57334,10 +57370,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02051r" sboTerm="SBO:0000247" id="MAM02051r" name="heneicosanoylcarnitine" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C28H55NO4">
+      <species metaid="M_MAM02051r" sboTerm="SBO:0000247" id="M_MAM02051r" name="heneicosanoylcarnitine" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C28H55NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02051r">
+            <rdf:Description rdf:about="#M_MAM02051r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M02051"/>
@@ -57347,10 +57383,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02052c" sboTerm="SBO:0000247" id="MAM02052c" name="heneicosanoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C42H72N7O17P3S">
+      <species metaid="M_MAM02052c" sboTerm="SBO:0000247" id="M_MAM02052c" name="heneicosanoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C42H72N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02052c">
+            <rdf:Description rdf:about="#M_MAM02052c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M02052"/>
@@ -57360,10 +57396,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02052m" sboTerm="SBO:0000247" id="MAM02052m" name="heneicosanoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C42H72N7O17P3S">
+      <species metaid="M_MAM02052m" sboTerm="SBO:0000247" id="M_MAM02052m" name="heneicosanoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C42H72N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02052m">
+            <rdf:Description rdf:about="#M_MAM02052m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M02052"/>
@@ -57373,10 +57409,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02052r" sboTerm="SBO:0000247" id="MAM02052r" name="heneicosanoyl-CoA" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C42H72N7O17P3S">
+      <species metaid="M_MAM02052r" sboTerm="SBO:0000247" id="M_MAM02052r" name="heneicosanoyl-CoA" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C42H72N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02052r">
+            <rdf:Description rdf:about="#M_MAM02052r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M02052"/>
@@ -57386,10 +57422,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02053c" sboTerm="SBO:0000247" id="MAM02053c" name="henicosanoic acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C21H41O2">
+      <species metaid="M_MAM02053c" sboTerm="SBO:0000247" id="M_MAM02053c" name="henicosanoic acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C21H41O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02053c">
+            <rdf:Description rdf:about="#M_MAM02053c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:39248"/>
@@ -57404,10 +57440,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02053l" sboTerm="SBO:0000247" id="MAM02053l" name="henicosanoic acid" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C21H41O2">
+      <species metaid="M_MAM02053l" sboTerm="SBO:0000247" id="M_MAM02053l" name="henicosanoic acid" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C21H41O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02053l">
+            <rdf:Description rdf:about="#M_MAM02053l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:39248"/>
@@ -57422,10 +57458,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02053r" sboTerm="SBO:0000247" id="MAM02053r" name="henicosanoic acid" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C21H41O2">
+      <species metaid="M_MAM02053r" sboTerm="SBO:0000247" id="M_MAM02053r" name="henicosanoic acid" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C21H41O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02053r">
+            <rdf:Description rdf:about="#M_MAM02053r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:39248"/>
@@ -57440,10 +57476,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02053e" sboTerm="SBO:0000247" id="MAM02053e" name="henicosanoic acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C21H41O2">
+      <species metaid="M_MAM02053e" sboTerm="SBO:0000247" id="M_MAM02053e" name="henicosanoic acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C21H41O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02053e">
+            <rdf:Description rdf:about="#M_MAM02053e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:39248"/>
@@ -57458,10 +57494,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02054g" sboTerm="SBO:0000247" id="MAM02054g" name="heparan sulfate proteoglycan" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-13" fbc:chemicalFormula="C79H113N5O101S12X">
+      <species metaid="M_MAM02054g" sboTerm="SBO:0000247" id="M_MAM02054g" name="heparan sulfate proteoglycan" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-13" fbc:chemicalFormula="C79H113N5O101S12X">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02054g">
+            <rdf:Description rdf:about="#M_MAM02054g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hspg"/>
@@ -57473,10 +57509,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02054l" sboTerm="SBO:0000247" id="MAM02054l" name="heparan sulfate proteoglycan" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-13" fbc:chemicalFormula="C79H113N5O101S12X">
+      <species metaid="M_MAM02054l" sboTerm="SBO:0000247" id="M_MAM02054l" name="heparan sulfate proteoglycan" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-13" fbc:chemicalFormula="C79H113N5O101S12X">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02054l">
+            <rdf:Description rdf:about="#M_MAM02054l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hspg"/>
@@ -57488,10 +57524,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02054e" sboTerm="SBO:0000247" id="MAM02054e" name="heparan sulfate proteoglycan" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-13" fbc:chemicalFormula="C79H113N5O101S12X">
+      <species metaid="M_MAM02054e" sboTerm="SBO:0000247" id="M_MAM02054e" name="heparan sulfate proteoglycan" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-13" fbc:chemicalFormula="C79H113N5O101S12X">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02054e">
+            <rdf:Description rdf:about="#M_MAM02054e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hspg"/>
@@ -57503,10 +57539,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02055l" sboTerm="SBO:0000247" id="MAM02055l" name="heparan sulfate, degradation product 1" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-12" fbc:chemicalFormula="C79H115N5O99S11">
+      <species metaid="M_MAM02055l" sboTerm="SBO:0000247" id="M_MAM02055l" name="heparan sulfate, degradation product 1" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-12" fbc:chemicalFormula="C79H115N5O99S11">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02055l">
+            <rdf:Description rdf:about="#M_MAM02055l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hs_deg1"/>
@@ -57518,10 +57554,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02056l" sboTerm="SBO:0000247" id="MAM02056l" name="heparan sulfate, degradation product 10" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-9" fbc:chemicalFormula="C55H80N3O70S8">
+      <species metaid="M_MAM02056l" sboTerm="SBO:0000247" id="M_MAM02056l" name="heparan sulfate, degradation product 10" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-9" fbc:chemicalFormula="C55H80N3O70S8">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02056l">
+            <rdf:Description rdf:about="#M_MAM02056l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hs_deg10"/>
@@ -57533,10 +57569,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02057l" sboTerm="SBO:0000247" id="MAM02057l" name="heparan sulfate, degradation product 11" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-8" fbc:chemicalFormula="C55H81N3O67S7">
+      <species metaid="M_MAM02057l" sboTerm="SBO:0000247" id="M_MAM02057l" name="heparan sulfate, degradation product 11" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-8" fbc:chemicalFormula="C55H81N3O67S7">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02057l">
+            <rdf:Description rdf:about="#M_MAM02057l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hs_deg11"/>
@@ -57548,10 +57584,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02058l" sboTerm="SBO:0000247" id="MAM02058l" name="heparan sulfate, degradation product 12" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-7" fbc:chemicalFormula="C55H82N3O64S6">
+      <species metaid="M_MAM02058l" sboTerm="SBO:0000247" id="M_MAM02058l" name="heparan sulfate, degradation product 12" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-7" fbc:chemicalFormula="C55H82N3O64S6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02058l">
+            <rdf:Description rdf:about="#M_MAM02058l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hs_deg12"/>
@@ -57563,10 +57599,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02059l" sboTerm="SBO:0000247" id="MAM02059l" name="heparan sulfate, degradation product 13" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-6" fbc:chemicalFormula="C55H83N3O61S5">
+      <species metaid="M_MAM02059l" sboTerm="SBO:0000247" id="M_MAM02059l" name="heparan sulfate, degradation product 13" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-6" fbc:chemicalFormula="C55H83N3O61S5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02059l">
+            <rdf:Description rdf:about="#M_MAM02059l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hs_deg13"/>
@@ -57578,10 +57614,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02060l" sboTerm="SBO:0000247" id="MAM02060l" name="heparan sulfate, degradation product 14" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-7" fbc:chemicalFormula="C57H84N3O62S5">
+      <species metaid="M_MAM02060l" sboTerm="SBO:0000247" id="M_MAM02060l" name="heparan sulfate, degradation product 14" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-7" fbc:chemicalFormula="C57H84N3O62S5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02060l">
+            <rdf:Description rdf:about="#M_MAM02060l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hs_deg14"/>
@@ -57593,10 +57629,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02061l" sboTerm="SBO:0000247" id="MAM02061l" name="heparan sulfate, degradation product 15" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-7" fbc:chemicalFormula="C49H71N2O57S5">
+      <species metaid="M_MAM02061l" sboTerm="SBO:0000247" id="M_MAM02061l" name="heparan sulfate, degradation product 15" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-7" fbc:chemicalFormula="C49H71N2O57S5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02061l">
+            <rdf:Description rdf:about="#M_MAM02061l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hs_deg15"/>
@@ -57608,10 +57644,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02062l" sboTerm="SBO:0000247" id="MAM02062l" name="heparan sulfate, degradation product 16" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-6" fbc:chemicalFormula="C49H72N2O54S4">
+      <species metaid="M_MAM02062l" sboTerm="SBO:0000247" id="M_MAM02062l" name="heparan sulfate, degradation product 16" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-6" fbc:chemicalFormula="C49H72N2O54S4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02062l">
+            <rdf:Description rdf:about="#M_MAM02062l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hs_deg16"/>
@@ -57623,10 +57659,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02063l" sboTerm="SBO:0000247" id="MAM02063l" name="heparan sulfate, degradation product 17" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C43H65N2O48S4">
+      <species metaid="M_MAM02063l" sboTerm="SBO:0000247" id="M_MAM02063l" name="heparan sulfate, degradation product 17" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C43H65N2O48S4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02063l">
+            <rdf:Description rdf:about="#M_MAM02063l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hs_deg17"/>
@@ -57638,10 +57674,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02064l" sboTerm="SBO:0000247" id="MAM02064l" name="heparan sulfate, degradation product 18" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C43H66N2O45S3">
+      <species metaid="M_MAM02064l" sboTerm="SBO:0000247" id="M_MAM02064l" name="heparan sulfate, degradation product 18" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C43H66N2O45S3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02064l">
+            <rdf:Description rdf:about="#M_MAM02064l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hs_deg18"/>
@@ -57653,10 +57689,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02065l" sboTerm="SBO:0000247" id="MAM02065l" name="heparan sulfate, degradation product 19" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C43H67N2O42S2">
+      <species metaid="M_MAM02065l" sboTerm="SBO:0000247" id="M_MAM02065l" name="heparan sulfate, degradation product 19" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C43H67N2O42S2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02065l">
+            <rdf:Description rdf:about="#M_MAM02065l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hs_deg19"/>
@@ -57668,10 +57704,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02066l" sboTerm="SBO:0000247" id="MAM02066l" name="heparan sulfate, degradation product 2" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-11" fbc:chemicalFormula="C79H116N5O96S10">
+      <species metaid="M_MAM02066l" sboTerm="SBO:0000247" id="M_MAM02066l" name="heparan sulfate, degradation product 2" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-11" fbc:chemicalFormula="C79H116N5O96S10">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02066l">
+            <rdf:Description rdf:about="#M_MAM02066l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hs_deg2"/>
@@ -57683,10 +57719,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02067l" sboTerm="SBO:0000247" id="MAM02067l" name="heparan sulfate, degradation product 20" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C45H68N2O43S2">
+      <species metaid="M_MAM02067l" sboTerm="SBO:0000247" id="M_MAM02067l" name="heparan sulfate, degradation product 20" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C45H68N2O43S2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02067l">
+            <rdf:Description rdf:about="#M_MAM02067l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hs_deg20"/>
@@ -57698,10 +57734,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02068l" sboTerm="SBO:0000247" id="MAM02068l" name="heparan sulfate, degradation product 21" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C37H55NO38S2">
+      <species metaid="M_MAM02068l" sboTerm="SBO:0000247" id="M_MAM02068l" name="heparan sulfate, degradation product 21" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C37H55NO38S2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02068l">
+            <rdf:Description rdf:about="#M_MAM02068l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hs_deg21"/>
@@ -57713,10 +57749,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02069l" sboTerm="SBO:0000247" id="MAM02069l" name="heparan sulfate, degradation product 22" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C37H56NO35S">
+      <species metaid="M_MAM02069l" sboTerm="SBO:0000247" id="M_MAM02069l" name="heparan sulfate, degradation product 22" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C37H56NO35S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02069l">
+            <rdf:Description rdf:about="#M_MAM02069l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hs_deg22"/>
@@ -57728,10 +57764,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02070l" sboTerm="SBO:0000247" id="MAM02070l" name="heparan sulfate, degradation product 23" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C31H49NO29S">
+      <species metaid="M_MAM02070l" sboTerm="SBO:0000247" id="M_MAM02070l" name="heparan sulfate, degradation product 23" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C31H49NO29S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02070l">
+            <rdf:Description rdf:about="#M_MAM02070l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hs_deg23"/>
@@ -57743,10 +57779,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02071l" sboTerm="SBO:0000247" id="MAM02071l" name="heparan sulfate, degradation product 24" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C31H50NO26">
+      <species metaid="M_MAM02071l" sboTerm="SBO:0000247" id="M_MAM02071l" name="heparan sulfate, degradation product 24" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C31H50NO26">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02071l">
+            <rdf:Description rdf:about="#M_MAM02071l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hs_deg24"/>
@@ -57758,10 +57794,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM02072l" sboTerm="SBO:0000247" id="MAM02072l" name="heparan sulfate, degradation product 25" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C23H37O21">
+      <species metaid="M_MAM02072l" sboTerm="SBO:0000247" id="M_MAM02072l" name="heparan sulfate, degradation product 25" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C23H37O21">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02072l">
+            <rdf:Description rdf:about="#M_MAM02072l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hs_deg25"/>
@@ -57773,10 +57809,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02073l" sboTerm="SBO:0000247" id="MAM02073l" name="heparan sulfate, degradation product 3" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-12" fbc:chemicalFormula="C81H117N5O97S10">
+      <species metaid="M_MAM02073l" sboTerm="SBO:0000247" id="M_MAM02073l" name="heparan sulfate, degradation product 3" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-12" fbc:chemicalFormula="C81H117N5O97S10">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02073l">
+            <rdf:Description rdf:about="#M_MAM02073l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hs_deg3"/>
@@ -57788,10 +57824,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM02074l" sboTerm="SBO:0000247" id="MAM02074l" name="heparan sulfate, degradation product 4" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-12" fbc:chemicalFormula="C73H104N4O92S10">
+      <species metaid="M_MAM02074l" sboTerm="SBO:0000247" id="M_MAM02074l" name="heparan sulfate, degradation product 4" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-12" fbc:chemicalFormula="C73H104N4O92S10">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02074l">
+            <rdf:Description rdf:about="#M_MAM02074l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hs_deg4"/>
@@ -57803,10 +57839,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02075l" sboTerm="SBO:0000247" id="MAM02075l" name="heparan sulfate, degradation product 5" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-11" fbc:chemicalFormula="C67H97N4O86S10">
+      <species metaid="M_MAM02075l" sboTerm="SBO:0000247" id="M_MAM02075l" name="heparan sulfate, degradation product 5" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-11" fbc:chemicalFormula="C67H97N4O86S10">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02075l">
+            <rdf:Description rdf:about="#M_MAM02075l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hs_deg5"/>
@@ -57818,10 +57854,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02076l" sboTerm="SBO:0000247" id="MAM02076l" name="heparan sulfate, degradation product 6" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-10" fbc:chemicalFormula="C67H98N4O83S9">
+      <species metaid="M_MAM02076l" sboTerm="SBO:0000247" id="M_MAM02076l" name="heparan sulfate, degradation product 6" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-10" fbc:chemicalFormula="C67H98N4O83S9">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02076l">
+            <rdf:Description rdf:about="#M_MAM02076l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hs_deg6"/>
@@ -57833,10 +57869,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02077l" sboTerm="SBO:0000247" id="MAM02077l" name="heparan sulfate, degradation product 7" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-9" fbc:chemicalFormula="C67H99N4O80S8">
+      <species metaid="M_MAM02077l" sboTerm="SBO:0000247" id="M_MAM02077l" name="heparan sulfate, degradation product 7" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-9" fbc:chemicalFormula="C67H99N4O80S8">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02077l">
+            <rdf:Description rdf:about="#M_MAM02077l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hs_deg7"/>
@@ -57848,10 +57884,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02078l" sboTerm="SBO:0000247" id="MAM02078l" name="heparan sulfate, degradation product 8" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-10" fbc:chemicalFormula="C69H100N4O81S8">
+      <species metaid="M_MAM02078l" sboTerm="SBO:0000247" id="M_MAM02078l" name="heparan sulfate, degradation product 8" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-10" fbc:chemicalFormula="C69H100N4O81S8">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02078l">
+            <rdf:Description rdf:about="#M_MAM02078l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hs_deg8"/>
@@ -57863,10 +57899,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02079l" sboTerm="SBO:0000247" id="MAM02079l" name="heparan sulfate, degradation product 9" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-10" fbc:chemicalFormula="C61H87N3O76S8">
+      <species metaid="M_MAM02079l" sboTerm="SBO:0000247" id="M_MAM02079l" name="heparan sulfate, degradation product 9" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-10" fbc:chemicalFormula="C61H87N3O76S8">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02079l">
+            <rdf:Description rdf:about="#M_MAM02079l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hs_deg9"/>
@@ -57878,10 +57914,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02080l" sboTerm="SBO:0000247" id="MAM02080l" name="heparan sulfate, free chain" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-13" fbc:chemicalFormula="C79H114N5O102S12">
+      <species metaid="M_MAM02080l" sboTerm="SBO:0000247" id="M_MAM02080l" name="heparan sulfate, free chain" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-13" fbc:chemicalFormula="C79H114N5O102S12">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02080l">
+            <rdf:Description rdf:about="#M_MAM02080l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hs"/>
@@ -57895,10 +57931,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02081g" sboTerm="SBO:0000247" id="MAM02081g" name="heparan sulfate, precursor 1" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C31H49NO25X">
+      <species metaid="M_MAM02081g" sboTerm="SBO:0000247" id="M_MAM02081g" name="heparan sulfate, precursor 1" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C31H49NO25X">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02081g">
+            <rdf:Description rdf:about="#M_MAM02081g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hs_pre1"/>
@@ -57910,10 +57946,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02082g" sboTerm="SBO:0000247" id="MAM02082g" name="heparan sulfate, precursor 10" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C79H121N5O77S4X">
+      <species metaid="M_MAM02082g" sboTerm="SBO:0000247" id="M_MAM02082g" name="heparan sulfate, precursor 10" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C79H121N5O77S4X">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02082g">
+            <rdf:Description rdf:about="#M_MAM02082g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hs_pre10"/>
@@ -57925,10 +57961,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02083g" sboTerm="SBO:0000247" id="MAM02083g" name="heparan sulfate, precursor 11" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C79H121N5O77S4X">
+      <species metaid="M_MAM02083g" sboTerm="SBO:0000247" id="M_MAM02083g" name="heparan sulfate, precursor 11" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C79H121N5O77S4X">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02083g">
+            <rdf:Description rdf:about="#M_MAM02083g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hs_pre11"/>
@@ -57940,10 +57976,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02084g" sboTerm="SBO:0000247" id="MAM02084g" name="heparan sulfate, precursor 12" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-7" fbc:chemicalFormula="C79H119N5O83S6X">
+      <species metaid="M_MAM02084g" sboTerm="SBO:0000247" id="M_MAM02084g" name="heparan sulfate, precursor 12" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-7" fbc:chemicalFormula="C79H119N5O83S6X">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02084g">
+            <rdf:Description rdf:about="#M_MAM02084g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hs_pre12"/>
@@ -57955,10 +57991,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02085g" sboTerm="SBO:0000247" id="MAM02085g" name="heparan sulfate, precursor 13" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-10" fbc:chemicalFormula="C79H116N5O92S9X">
+      <species metaid="M_MAM02085g" sboTerm="SBO:0000247" id="M_MAM02085g" name="heparan sulfate, precursor 13" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-10" fbc:chemicalFormula="C79H116N5O92S9X">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02085g">
+            <rdf:Description rdf:about="#M_MAM02085g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hs_pre13"/>
@@ -57970,10 +58006,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02086g" sboTerm="SBO:0000247" id="MAM02086g" name="heparan sulfate, precursor 14" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-11" fbc:chemicalFormula="C79H115N5O95S10X">
+      <species metaid="M_MAM02086g" sboTerm="SBO:0000247" id="M_MAM02086g" name="heparan sulfate, precursor 14" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-11" fbc:chemicalFormula="C79H115N5O95S10X">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02086g">
+            <rdf:Description rdf:about="#M_MAM02086g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hs_pre14"/>
@@ -57985,10 +58021,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02087g" sboTerm="SBO:0000247" id="MAM02087g" name="heparan sulfate, precursor 15" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-12" fbc:chemicalFormula="C79H114N5O98S11X">
+      <species metaid="M_MAM02087g" sboTerm="SBO:0000247" id="M_MAM02087g" name="heparan sulfate, precursor 15" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-12" fbc:chemicalFormula="C79H114N5O98S11X">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02087g">
+            <rdf:Description rdf:about="#M_MAM02087g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hs_pre15"/>
@@ -58000,10 +58036,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02088g" sboTerm="SBO:0000247" id="MAM02088g" name="heparan sulfate, precursor 2" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C37H56NO31X">
+      <species metaid="M_MAM02088g" sboTerm="SBO:0000247" id="M_MAM02088g" name="heparan sulfate, precursor 2" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C37H56NO31X">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02088g">
+            <rdf:Description rdf:about="#M_MAM02088g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hs_pre2"/>
@@ -58015,10 +58051,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02089g" sboTerm="SBO:0000247" id="MAM02089g" name="heparan sulfate, precursor 3" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C45H69N2O36X">
+      <species metaid="M_MAM02089g" sboTerm="SBO:0000247" id="M_MAM02089g" name="heparan sulfate, precursor 3" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C45H69N2O36X">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02089g">
+            <rdf:Description rdf:about="#M_MAM02089g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hs_pre3"/>
@@ -58030,10 +58066,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02090g" sboTerm="SBO:0000247" id="MAM02090g" name="heparan sulfate, precursor 4" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C51H76N2O42X">
+      <species metaid="M_MAM02090g" sboTerm="SBO:0000247" id="M_MAM02090g" name="heparan sulfate, precursor 4" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C51H76N2O42X">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02090g">
+            <rdf:Description rdf:about="#M_MAM02090g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hs_pre4"/>
@@ -58045,10 +58081,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02091g" sboTerm="SBO:0000247" id="MAM02091g" name="heparan sulfate, precursor 5" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C59H89N3O47X">
+      <species metaid="M_MAM02091g" sboTerm="SBO:0000247" id="M_MAM02091g" name="heparan sulfate, precursor 5" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C59H89N3O47X">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02091g">
+            <rdf:Description rdf:about="#M_MAM02091g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hs_pre5"/>
@@ -58060,10 +58096,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02092g" sboTerm="SBO:0000247" id="MAM02092g" name="heparan sulfate, precursor 6" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C65H96N3O53X">
+      <species metaid="M_MAM02092g" sboTerm="SBO:0000247" id="M_MAM02092g" name="heparan sulfate, precursor 6" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C65H96N3O53X">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02092g">
+            <rdf:Description rdf:about="#M_MAM02092g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hs_pre6"/>
@@ -58075,10 +58111,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02093g" sboTerm="SBO:0000247" id="MAM02093g" name="heparan sulfate, precursor 7" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C73H109N4O58X">
+      <species metaid="M_MAM02093g" sboTerm="SBO:0000247" id="M_MAM02093g" name="heparan sulfate, precursor 7" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C73H109N4O58X">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02093g">
+            <rdf:Description rdf:about="#M_MAM02093g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hs_pre7"/>
@@ -58090,10 +58126,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02094g" sboTerm="SBO:0000247" id="MAM02094g" name="heparan sulfate, precursor 8" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C79H116N4O64X">
+      <species metaid="M_MAM02094g" sboTerm="SBO:0000247" id="M_MAM02094g" name="heparan sulfate, precursor 8" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C79H116N4O64X">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02094g">
+            <rdf:Description rdf:about="#M_MAM02094g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hs_pre8"/>
@@ -58105,10 +58141,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02095g" sboTerm="SBO:0000247" id="MAM02095g" name="heparan sulfate, precursor 9" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C87H129N5O69X">
+      <species metaid="M_MAM02095g" sboTerm="SBO:0000247" id="M_MAM02095g" name="heparan sulfate, precursor 9" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C87H129N5O69X">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02095g">
+            <rdf:Description rdf:about="#M_MAM02095g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hs_pre9"/>
@@ -58120,10 +58156,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02096c" sboTerm="SBO:0000247" id="MAM02096c" name="hepoxilin A3" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O4">
+      <species metaid="M_MAM02096c" sboTerm="SBO:0000247" id="M_MAM02096c" name="hepoxilin A3" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02096c">
+            <rdf:Description rdf:about="#M_MAM02096c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:15631"/>
@@ -58138,10 +58174,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02096x" sboTerm="SBO:0000247" id="MAM02096x" name="hepoxilin A3" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O4">
+      <species metaid="M_MAM02096x" sboTerm="SBO:0000247" id="M_MAM02096x" name="hepoxilin A3" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02096x">
+            <rdf:Description rdf:about="#M_MAM02096x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:15631"/>
@@ -58156,10 +58192,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02096r" sboTerm="SBO:0000247" id="MAM02096r" name="hepoxilin A3" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O4">
+      <species metaid="M_MAM02096r" sboTerm="SBO:0000247" id="M_MAM02096r" name="hepoxilin A3" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02096r">
+            <rdf:Description rdf:about="#M_MAM02096r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:15631"/>
@@ -58174,10 +58210,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02096e" sboTerm="SBO:0000247" id="MAM02096e" name="hepoxilin A3" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O4">
+      <species metaid="M_MAM02096e" sboTerm="SBO:0000247" id="M_MAM02096e" name="hepoxilin A3" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02096e">
+            <rdf:Description rdf:about="#M_MAM02096e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:15631"/>
@@ -58192,10 +58228,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02097c" sboTerm="SBO:0000247" id="MAM02097c" name="hepoxilin A3-c" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C30H47N3O10S">
+      <species metaid="M_MAM02097c" sboTerm="SBO:0000247" id="M_MAM02097c" name="hepoxilin A3-c" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C30H47N3O10S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02097c">
+            <rdf:Description rdf:about="#M_MAM02097c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/LMFA03090008"/>
@@ -58207,10 +58243,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02097x" sboTerm="SBO:0000247" id="MAM02097x" name="hepoxilin A3-c" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C30H47N3O10S">
+      <species metaid="M_MAM02097x" sboTerm="SBO:0000247" id="M_MAM02097x" name="hepoxilin A3-c" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C30H47N3O10S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02097x">
+            <rdf:Description rdf:about="#M_MAM02097x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/LMFA03090008"/>
@@ -58222,10 +58258,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02097r" sboTerm="SBO:0000247" id="MAM02097r" name="hepoxilin A3-c" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C30H47N3O10S">
+      <species metaid="M_MAM02097r" sboTerm="SBO:0000247" id="M_MAM02097r" name="hepoxilin A3-c" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C30H47N3O10S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02097r">
+            <rdf:Description rdf:about="#M_MAM02097r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/LMFA03090008"/>
@@ -58237,10 +58273,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02098c" sboTerm="SBO:0000247" id="MAM02098c" name="hepoxilin B3" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O4">
+      <species metaid="M_MAM02098c" sboTerm="SBO:0000247" id="M_MAM02098c" name="hepoxilin B3" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02098c">
+            <rdf:Description rdf:about="#M_MAM02098c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/LMFA03090003"/>
@@ -58252,10 +58288,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02099c" sboTerm="SBO:0000247" id="MAM02099c" name="heptadecanoyl-[ACP]" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C28H53N2O8PRS">
+      <species metaid="M_MAM02099c" sboTerm="SBO:0000247" id="M_MAM02099c" name="heptadecanoyl-[ACP]" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C28H53N2O8PRS">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02099c">
+            <rdf:Description rdf:about="#M_MAM02099c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M02099"/>
@@ -58265,10 +58301,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02100c" sboTerm="SBO:0000247" id="MAM02100c" name="heptadecanoylcarnitine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C24H47NO4">
+      <species metaid="M_MAM02100c" sboTerm="SBO:0000247" id="M_MAM02100c" name="heptadecanoylcarnitine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C24H47NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02100c">
+            <rdf:Description rdf:about="#M_MAM02100c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hpdcacrn"/>
@@ -58282,10 +58318,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02100m" sboTerm="SBO:0000247" id="MAM02100m" name="heptadecanoylcarnitine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C24H47NO4">
+      <species metaid="M_MAM02100m" sboTerm="SBO:0000247" id="M_MAM02100m" name="heptadecanoylcarnitine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C24H47NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02100m">
+            <rdf:Description rdf:about="#M_MAM02100m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hpdcacrn"/>
@@ -58299,10 +58335,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02100r" sboTerm="SBO:0000247" id="MAM02100r" name="heptadecanoylcarnitine" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C24H47NO4">
+      <species metaid="M_MAM02100r" sboTerm="SBO:0000247" id="M_MAM02100r" name="heptadecanoylcarnitine" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C24H47NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02100r">
+            <rdf:Description rdf:about="#M_MAM02100r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hpdcacrn"/>
@@ -58316,10 +58352,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02101c" sboTerm="SBO:0000247" id="MAM02101c" name="heptadecanoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C38H64N7O17P3S">
+      <species metaid="M_MAM02101c" sboTerm="SBO:0000247" id="M_MAM02101c" name="heptadecanoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C38H64N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02101c">
+            <rdf:Description rdf:about="#M_MAM02101c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hpdcacoa"/>
@@ -58333,10 +58369,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02101m" sboTerm="SBO:0000247" id="MAM02101m" name="heptadecanoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C38H64N7O17P3S">
+      <species metaid="M_MAM02101m" sboTerm="SBO:0000247" id="M_MAM02101m" name="heptadecanoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C38H64N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02101m">
+            <rdf:Description rdf:about="#M_MAM02101m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hpdcacoa"/>
@@ -58350,10 +58386,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02101r" sboTerm="SBO:0000247" id="MAM02101r" name="heptadecanoyl-CoA" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C38H64N7O17P3S">
+      <species metaid="M_MAM02101r" sboTerm="SBO:0000247" id="M_MAM02101r" name="heptadecanoyl-CoA" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C38H64N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02101r">
+            <rdf:Description rdf:about="#M_MAM02101r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hpdcacoa"/>
@@ -58367,10 +58403,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02102c" sboTerm="SBO:0000247" id="MAM02102c" name="heptadecenoylcarnitine(7)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C24H45NO4">
+      <species metaid="M_MAM02102c" sboTerm="SBO:0000247" id="M_MAM02102c" name="heptadecenoylcarnitine(7)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C24H45NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02102c">
+            <rdf:Description rdf:about="#M_MAM02102c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M02102"/>
@@ -58380,10 +58416,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02102m" sboTerm="SBO:0000247" id="MAM02102m" name="heptadecenoylcarnitine(7)" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C24H45NO4">
+      <species metaid="M_MAM02102m" sboTerm="SBO:0000247" id="M_MAM02102m" name="heptadecenoylcarnitine(7)" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C24H45NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02102m">
+            <rdf:Description rdf:about="#M_MAM02102m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M02102"/>
@@ -58393,10 +58429,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02102r" sboTerm="SBO:0000247" id="MAM02102r" name="heptadecenoylcarnitine(7)" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C24H45NO4">
+      <species metaid="M_MAM02102r" sboTerm="SBO:0000247" id="M_MAM02102r" name="heptadecenoylcarnitine(7)" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C24H45NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02102r">
+            <rdf:Description rdf:about="#M_MAM02102r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M02102"/>
@@ -58406,10 +58442,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02103c" sboTerm="SBO:0000247" id="MAM02103c" name="heptadecenoylcarnitine(8)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C24H45NO4">
+      <species metaid="M_MAM02103c" sboTerm="SBO:0000247" id="M_MAM02103c" name="heptadecenoylcarnitine(8)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C24H45NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02103c">
+            <rdf:Description rdf:about="#M_MAM02103c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M02103"/>
@@ -58419,10 +58455,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02103m" sboTerm="SBO:0000247" id="MAM02103m" name="heptadecenoylcarnitine(8)" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C24H45NO4">
+      <species metaid="M_MAM02103m" sboTerm="SBO:0000247" id="M_MAM02103m" name="heptadecenoylcarnitine(8)" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C24H45NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02103m">
+            <rdf:Description rdf:about="#M_MAM02103m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M02103"/>
@@ -58432,10 +58468,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02103r" sboTerm="SBO:0000247" id="MAM02103r" name="heptadecenoylcarnitine(8)" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C24H45NO4">
+      <species metaid="M_MAM02103r" sboTerm="SBO:0000247" id="M_MAM02103r" name="heptadecenoylcarnitine(8)" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C24H45NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02103r">
+            <rdf:Description rdf:about="#M_MAM02103r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M02103"/>
@@ -58445,10 +58481,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02104c" sboTerm="SBO:0000247" id="MAM02104c" name="heptaglutamyl-folate(DHF)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-8" fbc:chemicalFormula="C49H55N13O24">
+      <species metaid="M_MAM02104c" sboTerm="SBO:0000247" id="M_MAM02104c" name="heptaglutamyl-folate(DHF)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-8" fbc:chemicalFormula="C49H55N13O24">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02104c">
+            <rdf:Description rdf:about="#M_MAM02104c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/7dhf"/>
@@ -58462,10 +58498,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02104l" sboTerm="SBO:0000247" id="MAM02104l" name="heptaglutamyl-folate(DHF)" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-8" fbc:chemicalFormula="C49H55N13O24">
+      <species metaid="M_MAM02104l" sboTerm="SBO:0000247" id="M_MAM02104l" name="heptaglutamyl-folate(DHF)" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-8" fbc:chemicalFormula="C49H55N13O24">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02104l">
+            <rdf:Description rdf:about="#M_MAM02104l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/7dhf"/>
@@ -58479,10 +58515,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02104m" sboTerm="SBO:0000247" id="MAM02104m" name="heptaglutamyl-folate(DHF)" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-8" fbc:chemicalFormula="C49H55N13O24">
+      <species metaid="M_MAM02104m" sboTerm="SBO:0000247" id="M_MAM02104m" name="heptaglutamyl-folate(DHF)" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-8" fbc:chemicalFormula="C49H55N13O24">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02104m">
+            <rdf:Description rdf:about="#M_MAM02104m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/7dhf"/>
@@ -58496,10 +58532,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02104e" sboTerm="SBO:0000247" id="MAM02104e" name="heptaglutamyl-folate(DHF)" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-8" fbc:chemicalFormula="C49H55N13O24">
+      <species metaid="M_MAM02104e" sboTerm="SBO:0000247" id="M_MAM02104e" name="heptaglutamyl-folate(DHF)" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-8" fbc:chemicalFormula="C49H55N13O24">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02104e">
+            <rdf:Description rdf:about="#M_MAM02104e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/7dhf"/>
@@ -58513,10 +58549,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02105c" sboTerm="SBO:0000247" id="MAM02105c" name="heptaglutamyl-folate(THF)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-8" fbc:chemicalFormula="C49H57N13O24">
+      <species metaid="M_MAM02105c" sboTerm="SBO:0000247" id="M_MAM02105c" name="heptaglutamyl-folate(THF)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-8" fbc:chemicalFormula="C49H57N13O24">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02105c">
+            <rdf:Description rdf:about="#M_MAM02105c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/7thf"/>
@@ -58528,10 +58564,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02105l" sboTerm="SBO:0000247" id="MAM02105l" name="heptaglutamyl-folate(THF)" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-8" fbc:chemicalFormula="C49H57N13O24">
+      <species metaid="M_MAM02105l" sboTerm="SBO:0000247" id="M_MAM02105l" name="heptaglutamyl-folate(THF)" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-8" fbc:chemicalFormula="C49H57N13O24">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02105l">
+            <rdf:Description rdf:about="#M_MAM02105l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/7thf"/>
@@ -58543,10 +58579,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02105m" sboTerm="SBO:0000247" id="MAM02105m" name="heptaglutamyl-folate(THF)" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-8" fbc:chemicalFormula="C49H57N13O24">
+      <species metaid="M_MAM02105m" sboTerm="SBO:0000247" id="M_MAM02105m" name="heptaglutamyl-folate(THF)" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-8" fbc:chemicalFormula="C49H57N13O24">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02105m">
+            <rdf:Description rdf:about="#M_MAM02105m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/7thf"/>
@@ -58558,10 +58594,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02105e" sboTerm="SBO:0000247" id="MAM02105e" name="heptaglutamyl-folate(THF)" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-8" fbc:chemicalFormula="C49H57N13O24">
+      <species metaid="M_MAM02105e" sboTerm="SBO:0000247" id="M_MAM02105e" name="heptaglutamyl-folate(THF)" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-8" fbc:chemicalFormula="C49H57N13O24">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02105e">
+            <rdf:Description rdf:about="#M_MAM02105e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/7thf"/>
@@ -58573,10 +58609,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02106c" sboTerm="SBO:0000247" id="MAM02106c" name="heptanoyl-[ACP]" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H33N2O8PRS">
+      <species metaid="M_MAM02106c" sboTerm="SBO:0000247" id="M_MAM02106c" name="heptanoyl-[ACP]" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H33N2O8PRS">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02106c">
+            <rdf:Description rdf:about="#M_MAM02106c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M02106"/>
@@ -58586,10 +58622,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02107c" sboTerm="SBO:0000247" id="MAM02107c" name="heptanoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C28H44N7O17P3S">
+      <species metaid="M_MAM02107c" sboTerm="SBO:0000247" id="M_MAM02107c" name="heptanoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C28H44N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02107c">
+            <rdf:Description rdf:about="#M_MAM02107c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hepcoa"/>
@@ -58606,10 +58642,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02107m" sboTerm="SBO:0000247" id="MAM02107m" name="heptanoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C28H44N7O17P3S">
+      <species metaid="M_MAM02107m" sboTerm="SBO:0000247" id="M_MAM02107m" name="heptanoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C28H44N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02107m">
+            <rdf:Description rdf:about="#M_MAM02107m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hepcoa"/>
@@ -58626,10 +58662,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02108c" sboTerm="SBO:0000247" id="MAM02108c" name="heptylic acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C7H13O2">
+      <species metaid="M_MAM02108c" sboTerm="SBO:0000247" id="M_MAM02108c" name="heptylic acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C7H13O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02108c">
+            <rdf:Description rdf:about="#M_MAM02108c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:45571"/>
@@ -58645,10 +58681,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02108e" sboTerm="SBO:0000247" id="MAM02108e" name="heptylic acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C7H13O2">
+      <species metaid="M_MAM02108e" sboTerm="SBO:0000247" id="M_MAM02108e" name="heptylic acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C7H13O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02108e">
+            <rdf:Description rdf:about="#M_MAM02108e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:45571"/>
@@ -58664,10 +58700,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02109c" sboTerm="SBO:0000247" id="MAM02109c" name="hexacosanoylcarnitine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C33H65NO4">
+      <species metaid="M_MAM02109c" sboTerm="SBO:0000247" id="M_MAM02109c" name="hexacosanoylcarnitine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C33H65NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02109c">
+            <rdf:Description rdf:about="#M_MAM02109c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hexccrn"/>
@@ -58682,10 +58718,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02109r" sboTerm="SBO:0000247" id="MAM02109r" name="hexacosanoylcarnitine" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C33H65NO4">
+      <species metaid="M_MAM02109r" sboTerm="SBO:0000247" id="M_MAM02109r" name="hexacosanoylcarnitine" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C33H65NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02109r">
+            <rdf:Description rdf:about="#M_MAM02109r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hexccrn"/>
@@ -58700,10 +58736,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02110c" sboTerm="SBO:0000247" id="MAM02110c" name="hexacosanoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C47H82N7O17P3S">
+      <species metaid="M_MAM02110c" sboTerm="SBO:0000247" id="M_MAM02110c" name="hexacosanoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C47H82N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02110c">
+            <rdf:Description rdf:about="#M_MAM02110c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hexccoa"/>
@@ -58718,10 +58754,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02110x" sboTerm="SBO:0000247" id="MAM02110x" name="hexacosanoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C47H82N7O17P3S">
+      <species metaid="M_MAM02110x" sboTerm="SBO:0000247" id="M_MAM02110x" name="hexacosanoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C47H82N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02110x">
+            <rdf:Description rdf:about="#M_MAM02110x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hexccoa"/>
@@ -58736,10 +58772,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02110r" sboTerm="SBO:0000247" id="MAM02110r" name="hexacosanoyl-CoA" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C47H82N7O17P3S">
+      <species metaid="M_MAM02110r" sboTerm="SBO:0000247" id="M_MAM02110r" name="hexacosanoyl-CoA" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C47H82N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02110r">
+            <rdf:Description rdf:about="#M_MAM02110r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hexccoa"/>
@@ -58754,10 +58790,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02111c" sboTerm="SBO:0000247" id="MAM02111c" name="hexacosenoylcarnitine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C33H63NO4">
+      <species metaid="M_MAM02111c" sboTerm="SBO:0000247" id="M_MAM02111c" name="hexacosenoylcarnitine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C33H63NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02111c">
+            <rdf:Description rdf:about="#M_MAM02111c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M02111"/>
@@ -58767,10 +58803,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02111r" sboTerm="SBO:0000247" id="MAM02111r" name="hexacosenoylcarnitine" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C33H63NO4">
+      <species metaid="M_MAM02111r" sboTerm="SBO:0000247" id="M_MAM02111r" name="hexacosenoylcarnitine" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C33H63NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02111r">
+            <rdf:Description rdf:about="#M_MAM02111r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M02111"/>
@@ -58780,10 +58816,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02112c" sboTerm="SBO:0000247" id="MAM02112c" name="hexacosenoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C47H80N7O17P3S">
+      <species metaid="M_MAM02112c" sboTerm="SBO:0000247" id="M_MAM02112c" name="hexacosenoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C47H80N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02112c">
+            <rdf:Description rdf:about="#M_MAM02112c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM146663"/>
@@ -58794,10 +58830,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02112x" sboTerm="SBO:0000247" id="MAM02112x" name="hexacosenoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C47H80N7O17P3S">
+      <species metaid="M_MAM02112x" sboTerm="SBO:0000247" id="M_MAM02112x" name="hexacosenoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C47H80N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02112x">
+            <rdf:Description rdf:about="#M_MAM02112x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM146663"/>
@@ -58808,10 +58844,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02112r" sboTerm="SBO:0000247" id="MAM02112r" name="hexacosenoyl-CoA" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C47H80N7O17P3S">
+      <species metaid="M_MAM02112r" sboTerm="SBO:0000247" id="M_MAM02112r" name="hexacosenoyl-CoA" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C47H80N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02112r">
+            <rdf:Description rdf:about="#M_MAM02112r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM146663"/>
@@ -58822,10 +58858,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02113c" sboTerm="SBO:0000247" id="MAM02113c" name="hexadecanal" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C16H32O">
+      <species metaid="M_MAM02113c" sboTerm="SBO:0000247" id="M_MAM02113c" name="hexadecanal" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C16H32O">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02113c">
+            <rdf:Description rdf:about="#M_MAM02113c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hxdcal"/>
@@ -58841,10 +58877,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02113r" sboTerm="SBO:0000247" id="MAM02113r" name="hexadecanal" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C16H32O">
+      <species metaid="M_MAM02113r" sboTerm="SBO:0000247" id="M_MAM02113r" name="hexadecanal" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C16H32O">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02113r">
+            <rdf:Description rdf:about="#M_MAM02113r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hxdcal"/>
@@ -58860,10 +58896,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02114x" sboTerm="SBO:0000247" id="MAM02114x" name="hexadecanol" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C16H34O">
+      <species metaid="M_MAM02114x" sboTerm="SBO:0000247" id="M_MAM02114x" name="hexadecanol" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C16H34O">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02114x">
+            <rdf:Description rdf:about="#M_MAM02114x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/LMFA05000061"/>
@@ -58875,10 +58911,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02115c" sboTerm="SBO:0000247" id="MAM02115c" name="hexadecanoyl-[ACP]" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C27H51N2O8PRS">
+      <species metaid="M_MAM02115c" sboTerm="SBO:0000247" id="M_MAM02115c" name="hexadecanoyl-[ACP]" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C27H51N2O8PRS">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02115c">
+            <rdf:Description rdf:about="#M_MAM02115c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/palmACP"/>
@@ -58891,10 +58927,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02116c" sboTerm="SBO:0000247" id="MAM02116c" name="hexadecenal" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C16H30O">
+      <species metaid="M_MAM02116c" sboTerm="SBO:0000247" id="M_MAM02116c" name="hexadecenal" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C16H30O">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02116c">
+            <rdf:Description rdf:about="#M_MAM02116c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C06123"/>
@@ -58907,10 +58943,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02117c" sboTerm="SBO:0000247" id="MAM02117c" name="hexadecenoylcarnitine(9)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H43NO4">
+      <species metaid="M_MAM02117c" sboTerm="SBO:0000247" id="M_MAM02117c" name="hexadecenoylcarnitine(9)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H43NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02117c">
+            <rdf:Description rdf:about="#M_MAM02117c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hdd2crn"/>
@@ -58925,10 +58961,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02117m" sboTerm="SBO:0000247" id="MAM02117m" name="hexadecenoylcarnitine(9)" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H43NO4">
+      <species metaid="M_MAM02117m" sboTerm="SBO:0000247" id="M_MAM02117m" name="hexadecenoylcarnitine(9)" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H43NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02117m">
+            <rdf:Description rdf:about="#M_MAM02117m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hdd2crn"/>
@@ -58943,10 +58979,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02117r" sboTerm="SBO:0000247" id="MAM02117r" name="hexadecenoylcarnitine(9)" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H43NO4">
+      <species metaid="M_MAM02117r" sboTerm="SBO:0000247" id="M_MAM02117r" name="hexadecenoylcarnitine(9)" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H43NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02117r">
+            <rdf:Description rdf:about="#M_MAM02117r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hdd2crn"/>
@@ -58961,10 +58997,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02118c" sboTerm="SBO:0000247" id="MAM02118c" name="hexaglutamyl-folate(DHF)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-7" fbc:chemicalFormula="C44H49N12O21">
+      <species metaid="M_MAM02118c" sboTerm="SBO:0000247" id="M_MAM02118c" name="hexaglutamyl-folate(DHF)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-7" fbc:chemicalFormula="C44H49N12O21">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02118c">
+            <rdf:Description rdf:about="#M_MAM02118c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/6dhf"/>
@@ -58977,10 +59013,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02118l" sboTerm="SBO:0000247" id="MAM02118l" name="hexaglutamyl-folate(DHF)" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-7" fbc:chemicalFormula="C44H49N12O21">
+      <species metaid="M_MAM02118l" sboTerm="SBO:0000247" id="M_MAM02118l" name="hexaglutamyl-folate(DHF)" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-7" fbc:chemicalFormula="C44H49N12O21">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02118l">
+            <rdf:Description rdf:about="#M_MAM02118l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/6dhf"/>
@@ -58993,10 +59029,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02118m" sboTerm="SBO:0000247" id="MAM02118m" name="hexaglutamyl-folate(DHF)" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-7" fbc:chemicalFormula="C44H49N12O21">
+      <species metaid="M_MAM02118m" sboTerm="SBO:0000247" id="M_MAM02118m" name="hexaglutamyl-folate(DHF)" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-7" fbc:chemicalFormula="C44H49N12O21">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02118m">
+            <rdf:Description rdf:about="#M_MAM02118m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/6dhf"/>
@@ -59009,10 +59045,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02118e" sboTerm="SBO:0000247" id="MAM02118e" name="hexaglutamyl-folate(DHF)" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-7" fbc:chemicalFormula="C44H49N12O21">
+      <species metaid="M_MAM02118e" sboTerm="SBO:0000247" id="M_MAM02118e" name="hexaglutamyl-folate(DHF)" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-7" fbc:chemicalFormula="C44H49N12O21">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02118e">
+            <rdf:Description rdf:about="#M_MAM02118e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/6dhf"/>
@@ -59025,10 +59061,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02119c" sboTerm="SBO:0000247" id="MAM02119c" name="hexaglutamyl-folate(THF)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-7" fbc:chemicalFormula="C44H51N12O21">
+      <species metaid="M_MAM02119c" sboTerm="SBO:0000247" id="M_MAM02119c" name="hexaglutamyl-folate(THF)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-7" fbc:chemicalFormula="C44H51N12O21">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02119c">
+            <rdf:Description rdf:about="#M_MAM02119c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/6thf"/>
@@ -59041,10 +59077,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02119l" sboTerm="SBO:0000247" id="MAM02119l" name="hexaglutamyl-folate(THF)" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-7" fbc:chemicalFormula="C44H51N12O21">
+      <species metaid="M_MAM02119l" sboTerm="SBO:0000247" id="M_MAM02119l" name="hexaglutamyl-folate(THF)" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-7" fbc:chemicalFormula="C44H51N12O21">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02119l">
+            <rdf:Description rdf:about="#M_MAM02119l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/6thf"/>
@@ -59057,10 +59093,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02119m" sboTerm="SBO:0000247" id="MAM02119m" name="hexaglutamyl-folate(THF)" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-7" fbc:chemicalFormula="C44H51N12O21">
+      <species metaid="M_MAM02119m" sboTerm="SBO:0000247" id="M_MAM02119m" name="hexaglutamyl-folate(THF)" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-7" fbc:chemicalFormula="C44H51N12O21">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02119m">
+            <rdf:Description rdf:about="#M_MAM02119m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/6thf"/>
@@ -59073,10 +59109,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02119e" sboTerm="SBO:0000247" id="MAM02119e" name="hexaglutamyl-folate(THF)" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-7" fbc:chemicalFormula="C44H51N12O21">
+      <species metaid="M_MAM02119e" sboTerm="SBO:0000247" id="M_MAM02119e" name="hexaglutamyl-folate(THF)" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-7" fbc:chemicalFormula="C44H51N12O21">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02119e">
+            <rdf:Description rdf:about="#M_MAM02119e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/6thf"/>
@@ -59089,10 +59125,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02120c" sboTerm="SBO:0000247" id="MAM02120c" name="hexanoic acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H11O2">
+      <species metaid="M_MAM02120c" sboTerm="SBO:0000247" id="M_MAM02120c" name="hexanoic acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H11O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02120c">
+            <rdf:Description rdf:about="#M_MAM02120c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:17120"/>
@@ -59108,10 +59144,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02120e" sboTerm="SBO:0000247" id="MAM02120e" name="hexanoic acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H11O2">
+      <species metaid="M_MAM02120e" sboTerm="SBO:0000247" id="M_MAM02120e" name="hexanoic acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H11O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02120e">
+            <rdf:Description rdf:about="#M_MAM02120e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:17120"/>
@@ -59127,10 +59163,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02121c" sboTerm="SBO:0000247" id="MAM02121c" name="hexanoyl-[ACP]" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C17H31N2O8PRS">
+      <species metaid="M_MAM02121c" sboTerm="SBO:0000247" id="M_MAM02121c" name="hexanoyl-[ACP]" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C17H31N2O8PRS">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02121c">
+            <rdf:Description rdf:about="#M_MAM02121c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C05749"/>
@@ -59142,10 +59178,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02122c" sboTerm="SBO:0000247" id="MAM02122c" name="hexanoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C27H42N7O17P3S">
+      <species metaid="M_MAM02122c" sboTerm="SBO:0000247" id="M_MAM02122c" name="hexanoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C27H42N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02122c">
+            <rdf:Description rdf:about="#M_MAM02122c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:27540"/>
@@ -59162,10 +59198,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02122m" sboTerm="SBO:0000247" id="MAM02122m" name="hexanoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C27H42N7O17P3S">
+      <species metaid="M_MAM02122m" sboTerm="SBO:0000247" id="M_MAM02122m" name="hexanoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C27H42N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02122m">
+            <rdf:Description rdf:about="#M_MAM02122m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:27540"/>
@@ -59182,10 +59218,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02122x" sboTerm="SBO:0000247" id="MAM02122x" name="hexanoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C27H42N7O17P3S">
+      <species metaid="M_MAM02122x" sboTerm="SBO:0000247" id="M_MAM02122x" name="hexanoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C27H42N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02122x">
+            <rdf:Description rdf:about="#M_MAM02122x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:27540"/>
@@ -59202,10 +59238,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02123c" sboTerm="SBO:0000247" id="MAM02123c" name="hippurate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C9H8NO3">
+      <species metaid="M_MAM02123c" sboTerm="SBO:0000247" id="M_MAM02123c" name="hippurate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C9H8NO3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02123c">
+            <rdf:Description rdf:about="#M_MAM02123c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:18089"/>
@@ -59220,10 +59256,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02124c" sboTerm="SBO:0000247" id="MAM02124c" name="histamine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C5H10N3">
+      <species metaid="M_MAM02124c" sboTerm="SBO:0000247" id="M_MAM02124c" name="histamine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C5H10N3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02124c">
+            <rdf:Description rdf:about="#M_MAM02124c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hista"/>
@@ -59239,10 +59275,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02124e" sboTerm="SBO:0000247" id="MAM02124e" name="histamine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C5H10N3">
+      <species metaid="M_MAM02124e" sboTerm="SBO:0000247" id="M_MAM02124e" name="histamine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C5H10N3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02124e">
+            <rdf:Description rdf:about="#M_MAM02124e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hista"/>
@@ -59258,10 +59294,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02125c" sboTerm="SBO:0000247" id="MAM02125c" name="histidine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H9N3O2">
+      <species metaid="M_MAM02125c" sboTerm="SBO:0000247" id="M_MAM02125c" name="histidine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H9N3O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02125c">
+            <rdf:Description rdf:about="#M_MAM02125c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/his__L"/>
@@ -59277,10 +59313,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02125l" sboTerm="SBO:0000247" id="MAM02125l" name="histidine" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H9N3O2">
+      <species metaid="M_MAM02125l" sboTerm="SBO:0000247" id="M_MAM02125l" name="histidine" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H9N3O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02125l">
+            <rdf:Description rdf:about="#M_MAM02125l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/his__L"/>
@@ -59296,10 +59332,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02125m" sboTerm="SBO:0000247" id="MAM02125m" name="histidine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H9N3O2">
+      <species metaid="M_MAM02125m" sboTerm="SBO:0000247" id="M_MAM02125m" name="histidine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H9N3O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02125m">
+            <rdf:Description rdf:about="#M_MAM02125m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/his__L"/>
@@ -59315,10 +59351,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02125e" sboTerm="SBO:0000247" id="MAM02125e" name="histidine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H9N3O2">
+      <species metaid="M_MAM02125e" sboTerm="SBO:0000247" id="M_MAM02125e" name="histidine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H9N3O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02125e">
+            <rdf:Description rdf:about="#M_MAM02125e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/his__L"/>
@@ -59334,10 +59370,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02126c" sboTerm="SBO:0000247" id="MAM02126c" name="histidyl-prolinamide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C11H18N5O2">
+      <species metaid="M_MAM02126c" sboTerm="SBO:0000247" id="M_MAM02126c" name="histidyl-prolinamide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C11H18N5O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02126c">
+            <rdf:Description rdf:about="#M_MAM02126c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM167922"/>
@@ -59348,10 +59384,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02127c" sboTerm="SBO:0000247" id="MAM02127c" name="histone-L-lysine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C7H14N3O2R2">
+      <species metaid="M_MAM02127c" sboTerm="SBO:0000247" id="M_MAM02127c" name="histone-L-lysine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C7H14N3O2R2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02127c">
+            <rdf:Description rdf:about="#M_MAM02127c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C02415"/>
@@ -59363,10 +59399,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02127n" sboTerm="SBO:0000247" id="MAM02127n" name="histone-L-lysine" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C7H14N3O2R2">
+      <species metaid="M_MAM02127n" sboTerm="SBO:0000247" id="M_MAM02127n" name="histone-L-lysine" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C7H14N3O2R2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02127n">
+            <rdf:Description rdf:about="#M_MAM02127n">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C02415"/>
@@ -59378,10 +59414,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02128c" sboTerm="SBO:0000247" id="MAM02128c" name="histone-N6-acetyl-L-lysine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H15N3O3R2">
+      <species metaid="M_MAM02128c" sboTerm="SBO:0000247" id="M_MAM02128c" name="histone-N6-acetyl-L-lysine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H15N3O3R2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02128c">
+            <rdf:Description rdf:about="#M_MAM02128c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C01997"/>
@@ -59393,10 +59429,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02129n" sboTerm="SBO:0000247" id="MAM02129n" name="histone-N6-methyl-L-lysine" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C8H16N3O2R2">
+      <species metaid="M_MAM02129n" sboTerm="SBO:0000247" id="M_MAM02129n" name="histone-N6-methyl-L-lysine" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C8H16N3O2R2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02129n">
+            <rdf:Description rdf:about="#M_MAM02129n">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/Nmelys"/>
@@ -59409,10 +59445,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02130c" sboTerm="SBO:0000247" id="MAM02130c" name="HMA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C25H47N2O9PRS">
+      <species metaid="M_MAM02130c" sboTerm="SBO:0000247" id="M_MAM02130c" name="HMA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C25H47N2O9PRS">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02130c">
+            <rdf:Description rdf:about="#M_MAM02130c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C04688"/>
@@ -59424,10 +59460,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02131c" sboTerm="SBO:0000247" id="MAM02131c" name="HMG-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C27H39N7O20P3S">
+      <species metaid="M_MAM02131c" sboTerm="SBO:0000247" id="M_MAM02131c" name="HMG-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C27H39N7O20P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02131c">
+            <rdf:Description rdf:about="#M_MAM02131c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hmgcoa"/>
@@ -59443,10 +59479,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02131m" sboTerm="SBO:0000247" id="MAM02131m" name="HMG-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C27H39N7O20P3S">
+      <species metaid="M_MAM02131m" sboTerm="SBO:0000247" id="M_MAM02131m" name="HMG-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C27H39N7O20P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02131m">
+            <rdf:Description rdf:about="#M_MAM02131m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hmgcoa"/>
@@ -59462,10 +59498,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02131x" sboTerm="SBO:0000247" id="MAM02131x" name="HMG-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C27H39N7O20P3S">
+      <species metaid="M_MAM02131x" sboTerm="SBO:0000247" id="M_MAM02131x" name="HMG-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C27H39N7O20P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02131x">
+            <rdf:Description rdf:about="#M_MAM02131x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hmgcoa"/>
@@ -59481,10 +59517,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02132c" sboTerm="SBO:0000247" id="MAM02132c" name="homocarnosine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H16N4O3">
+      <species metaid="M_MAM02132c" sboTerm="SBO:0000247" id="M_MAM02132c" name="homocarnosine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H16N4O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02132c">
+            <rdf:Description rdf:about="#M_MAM02132c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hmcarn"/>
@@ -59499,10 +59535,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02133c" sboTerm="SBO:0000247" id="MAM02133c" name="homocysteine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H9NO2S">
+      <species metaid="M_MAM02133c" sboTerm="SBO:0000247" id="M_MAM02133c" name="homocysteine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H9NO2S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02133c">
+            <rdf:Description rdf:about="#M_MAM02133c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hcys__L"/>
@@ -59519,10 +59555,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02134c" sboTerm="SBO:0000247" id="MAM02134c" name="homocysteine-thiolactone" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C4H8NOS">
+      <species metaid="M_MAM02134c" sboTerm="SBO:0000247" id="M_MAM02134c" name="homocysteine-thiolactone" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C4H8NOS">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02134c">
+            <rdf:Description rdf:about="#M_MAM02134c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM59433"/>
@@ -59534,10 +59570,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02135c" sboTerm="SBO:0000247" id="MAM02135c" name="homogentisate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C8H7O4">
+      <species metaid="M_MAM02135c" sboTerm="SBO:0000247" id="M_MAM02135c" name="homogentisate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C8H7O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02135c">
+            <rdf:Description rdf:about="#M_MAM02135c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hgentis"/>
@@ -59553,10 +59589,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02136c" sboTerm="SBO:0000247" id="MAM02136c" name="homoserine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H9NO3">
+      <species metaid="M_MAM02136c" sboTerm="SBO:0000247" id="M_MAM02136c" name="homoserine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H9NO3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02136c">
+            <rdf:Description rdf:about="#M_MAM02136c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hom__L"/>
@@ -59573,10 +59609,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02136e" sboTerm="SBO:0000247" id="MAM02136e" name="homoserine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H9NO3">
+      <species metaid="M_MAM02136e" sboTerm="SBO:0000247" id="M_MAM02136e" name="homoserine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H9NO3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02136e">
+            <rdf:Description rdf:about="#M_MAM02136e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hom__L"/>
@@ -59593,10 +59629,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02137c" sboTerm="SBO:0000247" id="MAM02137c" name="homovanillate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C9H9O4">
+      <species metaid="M_MAM02137c" sboTerm="SBO:0000247" id="M_MAM02137c" name="homovanillate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C9H9O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02137c">
+            <rdf:Description rdf:about="#M_MAM02137c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/homoval"/>
@@ -59613,10 +59649,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02137e" sboTerm="SBO:0000247" id="MAM02137e" name="homovanillate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C9H9O4">
+      <species metaid="M_MAM02137e" sboTerm="SBO:0000247" id="M_MAM02137e" name="homovanillate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C9H9O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02137e">
+            <rdf:Description rdf:about="#M_MAM02137e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/homoval"/>
@@ -59633,10 +59669,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02138c" sboTerm="SBO:0000247" id="MAM02138c" name="hordenine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C10H16NO">
+      <species metaid="M_MAM02138c" sboTerm="SBO:0000247" id="M_MAM02138c" name="hordenine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C10H16NO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02138c">
+            <rdf:Description rdf:about="#M_MAM02138c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:5764"/>
@@ -59651,10 +59687,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02139l" sboTerm="SBO:0000247" id="MAM02139l" name="hyaluronan biosynthesis, precursor 1" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C14H20NO11">
+      <species metaid="M_MAM02139l" sboTerm="SBO:0000247" id="M_MAM02139l" name="hyaluronan biosynthesis, precursor 1" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C14H20NO11">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02139l">
+            <rdf:Description rdf:about="#M_MAM02139l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ha_pre1"/>
@@ -59669,10 +59705,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02139e" sboTerm="SBO:0000247" id="MAM02139e" name="hyaluronan biosynthesis, precursor 1" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C14H20NO11">
+      <species metaid="M_MAM02139e" sboTerm="SBO:0000247" id="M_MAM02139e" name="hyaluronan biosynthesis, precursor 1" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C14H20NO11">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02139e">
+            <rdf:Description rdf:about="#M_MAM02139e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ha_pre1"/>
@@ -59687,10 +59723,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02140l" sboTerm="SBO:0000247" id="MAM02140l" name="hyaluronan degradation product 1" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C22H33N2O16">
+      <species metaid="M_MAM02140l" sboTerm="SBO:0000247" id="M_MAM02140l" name="hyaluronan degradation product 1" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C22H33N2O16">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02140l">
+            <rdf:Description rdf:about="#M_MAM02140l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ha_deg1"/>
@@ -59702,10 +59738,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02141l" sboTerm="SBO:0000247" id="MAM02141l" name="hyaluronate" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C28H40N2O22">
+      <species metaid="M_MAM02141l" sboTerm="SBO:0000247" id="M_MAM02141l" name="hyaluronate" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C28H40N2O22">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02141l">
+            <rdf:Description rdf:about="#M_MAM02141l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ha"/>
@@ -59720,10 +59756,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02141e" sboTerm="SBO:0000247" id="MAM02141e" name="hyaluronate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C28H40N2O22">
+      <species metaid="M_MAM02141e" sboTerm="SBO:0000247" id="M_MAM02141e" name="hyaluronate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C28H40N2O22">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02141e">
+            <rdf:Description rdf:about="#M_MAM02141e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ha"/>
@@ -59738,10 +59774,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02142m" sboTerm="SBO:0000247" id="MAM02142m" name="hydracrylate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C3H5O3">
+      <species metaid="M_MAM02142m" sboTerm="SBO:0000247" id="M_MAM02142m" name="hydracrylate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C3H5O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02142m">
+            <rdf:Description rdf:about="#M_MAM02142m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/3hpp"/>
@@ -59757,10 +59793,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02143c" sboTerm="SBO:0000247" id="MAM02143c" name="hydrobromic acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="Br">
+      <species metaid="M_MAM02143c" sboTerm="SBO:0000247" id="M_MAM02143c" name="hydrobromic acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="Br">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02143c">
+            <rdf:Description rdf:about="#M_MAM02143c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:47266"/>
@@ -59773,10 +59809,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02144c" sboTerm="SBO:0000247" id="MAM02144c" name="hydrochloride" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="HCl">
+      <species metaid="M_MAM02144c" sboTerm="SBO:0000247" id="M_MAM02144c" name="hydrochloride" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="HCl">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02144c">
+            <rdf:Description rdf:about="#M_MAM02144c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C01327"/>
@@ -59788,10 +59824,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02145c" sboTerm="SBO:0000247" id="MAM02145c" name="hydrogen-cyanide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="CHN">
+      <species metaid="M_MAM02145c" sboTerm="SBO:0000247" id="M_MAM02145c" name="hydrogen-cyanide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="CHN">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02145c">
+            <rdf:Description rdf:about="#M_MAM02145c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/cyan"/>
@@ -59806,10 +59842,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02145m" sboTerm="SBO:0000247" id="MAM02145m" name="hydrogen-cyanide" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="CHN">
+      <species metaid="M_MAM02145m" sboTerm="SBO:0000247" id="M_MAM02145m" name="hydrogen-cyanide" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="CHN">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02145m">
+            <rdf:Description rdf:about="#M_MAM02145m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/cyan"/>
@@ -59824,10 +59860,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02145e" sboTerm="SBO:0000247" id="MAM02145e" name="hydrogen-cyanide" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="CHN">
+      <species metaid="M_MAM02145e" sboTerm="SBO:0000247" id="M_MAM02145e" name="hydrogen-cyanide" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="CHN">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02145e">
+            <rdf:Description rdf:about="#M_MAM02145e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/cyan"/>
@@ -59842,10 +59878,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02146c" sboTerm="SBO:0000247" id="MAM02146c" name="hydroiodic acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="I">
+      <species metaid="M_MAM02146c" sboTerm="SBO:0000247" id="M_MAM02146c" name="hydroiodic acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="I">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02146c">
+            <rdf:Description rdf:about="#M_MAM02146c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:43451"/>
@@ -59858,10 +59894,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02147c" sboTerm="SBO:0000247" id="MAM02147c" name="hydroxide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="HO">
+      <species metaid="M_MAM02147c" sboTerm="SBO:0000247" id="M_MAM02147c" name="hydroxide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="HO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02147c">
+            <rdf:Description rdf:about="#M_MAM02147c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/oh1"/>
@@ -59876,10 +59912,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02147m" sboTerm="SBO:0000247" id="MAM02147m" name="hydroxide" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="HO">
+      <species metaid="M_MAM02147m" sboTerm="SBO:0000247" id="M_MAM02147m" name="hydroxide" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="HO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02147m">
+            <rdf:Description rdf:about="#M_MAM02147m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/oh1"/>
@@ -59894,10 +59930,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02147e" sboTerm="SBO:0000247" id="MAM02147e" name="hydroxide" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="HO">
+      <species metaid="M_MAM02147e" sboTerm="SBO:0000247" id="M_MAM02147e" name="hydroxide" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="HO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02147e">
+            <rdf:Description rdf:about="#M_MAM02147e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/oh1"/>
@@ -59912,10 +59948,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02148c" sboTerm="SBO:0000247" id="MAM02148c" name="hydroxyacetone" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H6O2">
+      <species metaid="M_MAM02148c" sboTerm="SBO:0000247" id="M_MAM02148c" name="hydroxyacetone" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H6O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02148c">
+            <rdf:Description rdf:about="#M_MAM02148c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/acetol"/>
@@ -59931,10 +59967,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02149c" sboTerm="SBO:0000247" id="MAM02149c" name="hydroxyl radical" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="HO">
+      <species metaid="M_MAM02149c" sboTerm="SBO:0000247" id="M_MAM02149c" name="hydroxyl radical" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="HO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02149c">
+            <rdf:Description rdf:about="#M_MAM02149c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM56888"/>
@@ -59944,10 +59980,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02150c" sboTerm="SBO:0000247" id="MAM02150c" name="hydroxylated-ebastine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C32H39NO3">
+      <species metaid="M_MAM02150c" sboTerm="SBO:0000247" id="M_MAM02150c" name="hydroxylated-ebastine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C32H39NO3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02150c">
+            <rdf:Description rdf:about="#M_MAM02150c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ebastineoh"/>
@@ -59959,10 +59995,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02150r" sboTerm="SBO:0000247" id="MAM02150r" name="hydroxylated-ebastine" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C32H39NO3">
+      <species metaid="M_MAM02150r" sboTerm="SBO:0000247" id="M_MAM02150r" name="hydroxylated-ebastine" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C32H39NO3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02150r">
+            <rdf:Description rdf:about="#M_MAM02150r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ebastineoh"/>
@@ -59974,10 +60010,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02150e" sboTerm="SBO:0000247" id="MAM02150e" name="hydroxylated-ebastine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C32H39NO3">
+      <species metaid="M_MAM02150e" sboTerm="SBO:0000247" id="M_MAM02150e" name="hydroxylated-ebastine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C32H39NO3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02150e">
+            <rdf:Description rdf:about="#M_MAM02150e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ebastineoh"/>
@@ -59989,10 +60025,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02151c" sboTerm="SBO:0000247" id="MAM02151c" name="hydroxymethylbilane" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-8" fbc:chemicalFormula="C40H38N4O17">
+      <species metaid="M_MAM02151c" sboTerm="SBO:0000247" id="M_MAM02151c" name="hydroxymethylbilane" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-8" fbc:chemicalFormula="C40H38N4O17">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02151c">
+            <rdf:Description rdf:about="#M_MAM02151c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hmbil"/>
@@ -60007,10 +60043,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02152c" sboTerm="SBO:0000247" id="MAM02152c" name="hydroxymethylglutathione" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C11H18N3O7S">
+      <species metaid="M_MAM02152c" sboTerm="SBO:0000247" id="M_MAM02152c" name="hydroxymethylglutathione" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C11H18N3O7S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02152c">
+            <rdf:Description rdf:about="#M_MAM02152c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:48926"/>
@@ -60025,10 +60061,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02153c" sboTerm="SBO:0000247" id="MAM02153c" name="hydroxy-nifedipine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C17H18N2O7">
+      <species metaid="M_MAM02153c" sboTerm="SBO:0000247" id="M_MAM02153c" name="hydroxy-nifedipine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C17H18N2O7">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02153c">
+            <rdf:Description rdf:about="#M_MAM02153c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hnifedipine"/>
@@ -60040,10 +60076,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02153e" sboTerm="SBO:0000247" id="MAM02153e" name="hydroxy-nifedipine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C17H18N2O7">
+      <species metaid="M_MAM02153e" sboTerm="SBO:0000247" id="M_MAM02153e" name="hydroxy-nifedipine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C17H18N2O7">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02153e">
+            <rdf:Description rdf:about="#M_MAM02153e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hnifedipine"/>
@@ -60055,10 +60091,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02154c" sboTerm="SBO:0000247" id="MAM02154c" name="hydroxypyruvate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C3H3O4">
+      <species metaid="M_MAM02154c" sboTerm="SBO:0000247" id="M_MAM02154c" name="hydroxypyruvate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C3H3O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02154c">
+            <rdf:Description rdf:about="#M_MAM02154c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hpyr"/>
@@ -60073,10 +60109,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02154m" sboTerm="SBO:0000247" id="MAM02154m" name="hydroxypyruvate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C3H3O4">
+      <species metaid="M_MAM02154m" sboTerm="SBO:0000247" id="M_MAM02154m" name="hydroxypyruvate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C3H3O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02154m">
+            <rdf:Description rdf:about="#M_MAM02154m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hpyr"/>
@@ -60091,10 +60127,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02154x" sboTerm="SBO:0000247" id="MAM02154x" name="hydroxypyruvate" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C3H3O4">
+      <species metaid="M_MAM02154x" sboTerm="SBO:0000247" id="M_MAM02154x" name="hydroxypyruvate" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C3H3O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02154x">
+            <rdf:Description rdf:about="#M_MAM02154x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hpyr"/>
@@ -60109,10 +60145,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02155c" sboTerm="SBO:0000247" id="MAM02155c" name="hyodeoxycholate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C24H40O4">
+      <species metaid="M_MAM02155c" sboTerm="SBO:0000247" id="M_MAM02155c" name="hyodeoxycholate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C24H40O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02155c">
+            <rdf:Description rdf:about="#M_MAM02155c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C15517"/>
@@ -60125,10 +60161,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02155e" sboTerm="SBO:0000247" id="MAM02155e" name="hyodeoxycholate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C24H40O4">
+      <species metaid="M_MAM02155e" sboTerm="SBO:0000247" id="M_MAM02155e" name="hyodeoxycholate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C24H40O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02155e">
+            <rdf:Description rdf:about="#M_MAM02155e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C15517"/>
@@ -60141,10 +60177,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02156c" sboTerm="SBO:0000247" id="MAM02156c" name="hypochlorite" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="ClHO">
+      <species metaid="M_MAM02156c" sboTerm="SBO:0000247" id="M_MAM02156c" name="hypochlorite" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="ClHO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02156c">
+            <rdf:Description rdf:about="#M_MAM02156c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM3035"/>
@@ -60157,10 +60193,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02157c" sboTerm="SBO:0000247" id="MAM02157c" name="hypotaurine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C2H7NO2S">
+      <species metaid="M_MAM02157c" sboTerm="SBO:0000247" id="M_MAM02157c" name="hypotaurine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C2H7NO2S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02157c">
+            <rdf:Description rdf:about="#M_MAM02157c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hyptaur"/>
@@ -60178,10 +60214,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02158c" sboTerm="SBO:0000247" id="MAM02158c" name="hypothiocyanite" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="CHNOS">
+      <species metaid="M_MAM02158c" sboTerm="SBO:0000247" id="M_MAM02158c" name="hypothiocyanite" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="CHNOS">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02158c">
+            <rdf:Description rdf:about="#M_MAM02158c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM57006"/>
@@ -60194,10 +60230,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02159c" sboTerm="SBO:0000247" id="MAM02159c" name="hypoxanthine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H4N4O">
+      <species metaid="M_MAM02159c" sboTerm="SBO:0000247" id="M_MAM02159c" name="hypoxanthine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H4N4O">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02159c">
+            <rdf:Description rdf:about="#M_MAM02159c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hxan"/>
@@ -60214,10 +60250,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02159x" sboTerm="SBO:0000247" id="MAM02159x" name="hypoxanthine" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H4N4O">
+      <species metaid="M_MAM02159x" sboTerm="SBO:0000247" id="M_MAM02159x" name="hypoxanthine" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H4N4O">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02159x">
+            <rdf:Description rdf:about="#M_MAM02159x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hxan"/>
@@ -60234,10 +60270,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02159e" sboTerm="SBO:0000247" id="MAM02159e" name="hypoxanthine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H4N4O">
+      <species metaid="M_MAM02159e" sboTerm="SBO:0000247" id="M_MAM02159e" name="hypoxanthine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H4N4O">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02159e">
+            <rdf:Description rdf:about="#M_MAM02159e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hxan"/>
@@ -60254,10 +60290,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02161c" sboTerm="SBO:0000247" id="MAM02161c" name="IDP" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C10H11N4O11P2">
+      <species metaid="M_MAM02161c" sboTerm="SBO:0000247" id="M_MAM02161c" name="IDP" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C10H11N4O11P2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02161c">
+            <rdf:Description rdf:about="#M_MAM02161c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/idp"/>
@@ -60272,10 +60308,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02161m" sboTerm="SBO:0000247" id="MAM02161m" name="IDP" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C10H11N4O11P2">
+      <species metaid="M_MAM02161m" sboTerm="SBO:0000247" id="M_MAM02161m" name="IDP" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C10H11N4O11P2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02161m">
+            <rdf:Description rdf:about="#M_MAM02161m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/idp"/>
@@ -60290,10 +60326,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02161n" sboTerm="SBO:0000247" id="MAM02161n" name="IDP" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C10H11N4O11P2">
+      <species metaid="M_MAM02161n" sboTerm="SBO:0000247" id="M_MAM02161n" name="IDP" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C10H11N4O11P2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02161n">
+            <rdf:Description rdf:about="#M_MAM02161n">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/idp"/>
@@ -60308,10 +60344,10 @@
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+      <species metaid="M_MAM02161e" sboTerm="SBO:0000247" id="M_MAM02161e" name="IDP" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C10H11N4O11P2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02161e">
+            <rdf:Description rdf:about="#M_MAM02161e">
               <bqbiol:is>
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                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/idp"/>
@@ -60326,10 +60362,10 @@
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-      <species metaid="MAM02162c" sboTerm="SBO:0000247" id="MAM02162c" name="III3,IV2Fuc-nLc4Cer" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C57H99N2O31R">
+      <species metaid="M_MAM02162c" sboTerm="SBO:0000247" id="M_MAM02162c" name="III3,IV2Fuc-nLc4Cer" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C57H99N2O31R">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02162c">
+            <rdf:Description rdf:about="#M_MAM02162c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/G00056"/>
@@ -60341,10 +60377,10 @@
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+      <species metaid="M_MAM02163c" sboTerm="SBO:0000247" id="M_MAM02163c" name="III3Fuc-nLc4Cer" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C51H89N2O27R">
         <annotation>
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-            <rdf:Description rdf:about="#MAM02163c">
+            <rdf:Description rdf:about="#M_MAM02163c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/G00060"/>
@@ -60356,10 +60392,10 @@
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-      <species metaid="MAM02164c" sboTerm="SBO:0000247" id="MAM02164c" name="III3Fuc-nLc6Cer" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C64H112N3O36RCO">
+      <species metaid="M_MAM02164c" sboTerm="SBO:0000247" id="M_MAM02164c" name="III3Fuc-nLc6Cer" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C64H112N3O36RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02164c">
+            <rdf:Description rdf:about="#M_MAM02164c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/fuc13galacglcgal14acglcgalgluside_hs"/>
@@ -60372,10 +60408,10 @@
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-      <species metaid="MAM02164g" sboTerm="SBO:0000247" id="MAM02164g" name="III3Fuc-nLc6Cer" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C64H112N3O36RCO">
+      <species metaid="M_MAM02164g" sboTerm="SBO:0000247" id="M_MAM02164g" name="III3Fuc-nLc6Cer" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C64H112N3O36RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02164g">
+            <rdf:Description rdf:about="#M_MAM02164g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/fuc13galacglcgal14acglcgalgluside_hs"/>
@@ -60388,10 +60424,10 @@
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-      <species metaid="MAM02164e" sboTerm="SBO:0000247" id="MAM02164e" name="III3Fuc-nLc6Cer" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C64H112N3O36RCO">
+      <species metaid="M_MAM02164e" sboTerm="SBO:0000247" id="M_MAM02164e" name="III3Fuc-nLc6Cer" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C64H112N3O36RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02164e">
+            <rdf:Description rdf:about="#M_MAM02164e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/fuc13galacglcgal14acglcgalgluside_hs"/>
@@ -60404,10 +60440,10 @@
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-      <species metaid="MAM02165c" sboTerm="SBO:0000247" id="MAM02165c" name="imidazole-4-acetaldehyde" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H6N2O">
+      <species metaid="M_MAM02165c" sboTerm="SBO:0000247" id="M_MAM02165c" name="imidazole-4-acetaldehyde" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H6N2O">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02165c">
+            <rdf:Description rdf:about="#M_MAM02165c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/im4act"/>
@@ -60423,10 +60459,10 @@
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         </annotation>
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-      <species metaid="MAM02165m" sboTerm="SBO:0000247" id="MAM02165m" name="imidazole-4-acetaldehyde" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H6N2O">
+      <species metaid="M_MAM02165m" sboTerm="SBO:0000247" id="M_MAM02165m" name="imidazole-4-acetaldehyde" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H6N2O">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02165m">
+            <rdf:Description rdf:about="#M_MAM02165m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/im4act"/>
@@ -60442,10 +60478,10 @@
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         </annotation>
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-      <species metaid="MAM02166c" sboTerm="SBO:0000247" id="MAM02166c" name="imidazole-4-acetate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C5H5N2O2">
+      <species metaid="M_MAM02166c" sboTerm="SBO:0000247" id="M_MAM02166c" name="imidazole-4-acetate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C5H5N2O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02166c">
+            <rdf:Description rdf:about="#M_MAM02166c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/im4ac"/>
@@ -60461,10 +60497,10 @@
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         </annotation>
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-      <species metaid="MAM02166m" sboTerm="SBO:0000247" id="MAM02166m" name="imidazole-4-acetate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C5H5N2O2">
+      <species metaid="M_MAM02166m" sboTerm="SBO:0000247" id="M_MAM02166m" name="imidazole-4-acetate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C5H5N2O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02166m">
+            <rdf:Description rdf:about="#M_MAM02166m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/im4ac"/>
@@ -60480,10 +60516,10 @@
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         </annotation>
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-      <species metaid="MAM02167c" sboTerm="SBO:0000247" id="MAM02167c" name="IMP" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C10H11N4O8P">
+      <species metaid="M_MAM02167c" sboTerm="SBO:0000247" id="M_MAM02167c" name="IMP" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C10H11N4O8P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02167c">
+            <rdf:Description rdf:about="#M_MAM02167c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/imp"/>
@@ -60499,10 +60535,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM02167m" sboTerm="SBO:0000247" id="MAM02167m" name="IMP" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C10H11N4O8P">
+      <species metaid="M_MAM02167m" sboTerm="SBO:0000247" id="M_MAM02167m" name="IMP" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C10H11N4O8P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02167m">
+            <rdf:Description rdf:about="#M_MAM02167m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/imp"/>
@@ -60518,10 +60554,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM02167e" sboTerm="SBO:0000247" id="MAM02167e" name="IMP" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C10H11N4O8P">
+      <species metaid="M_MAM02167e" sboTerm="SBO:0000247" id="M_MAM02167e" name="IMP" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C10H11N4O8P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02167e">
+            <rdf:Description rdf:about="#M_MAM02167e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/imp"/>
@@ -60537,10 +60573,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02168c" sboTerm="SBO:0000247" id="MAM02168c" name="indole-3-acetaldehyde" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H9NO">
+      <species metaid="M_MAM02168c" sboTerm="SBO:0000247" id="M_MAM02168c" name="indole-3-acetaldehyde" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H9NO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02168c">
+            <rdf:Description rdf:about="#M_MAM02168c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/id3acald"/>
@@ -60554,10 +60590,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02168m" sboTerm="SBO:0000247" id="MAM02168m" name="indole-3-acetaldehyde" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H9NO">
+      <species metaid="M_MAM02168m" sboTerm="SBO:0000247" id="M_MAM02168m" name="indole-3-acetaldehyde" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H9NO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02168m">
+            <rdf:Description rdf:about="#M_MAM02168m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/id3acald"/>
@@ -60571,10 +60607,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM02169c" sboTerm="SBO:0000247" id="MAM02169c" name="indoleacetate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H8NO2">
+      <species metaid="M_MAM02169c" sboTerm="SBO:0000247" id="M_MAM02169c" name="indoleacetate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H8NO2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02169c">
+            <rdf:Description rdf:about="#M_MAM02169c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ind3ac"/>
@@ -60590,10 +60626,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02169m" sboTerm="SBO:0000247" id="MAM02169m" name="indoleacetate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H8NO2">
+      <species metaid="M_MAM02169m" sboTerm="SBO:0000247" id="M_MAM02169m" name="indoleacetate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H8NO2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02169m">
+            <rdf:Description rdf:about="#M_MAM02169m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ind3ac"/>
@@ -60609,10 +60645,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02170c" sboTerm="SBO:0000247" id="MAM02170c" name="inosine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H12N4O5">
+      <species metaid="M_MAM02170c" sboTerm="SBO:0000247" id="M_MAM02170c" name="inosine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H12N4O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02170c">
+            <rdf:Description rdf:about="#M_MAM02170c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ins"/>
@@ -60629,10 +60665,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02170m" sboTerm="SBO:0000247" id="MAM02170m" name="inosine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H12N4O5">
+      <species metaid="M_MAM02170m" sboTerm="SBO:0000247" id="M_MAM02170m" name="inosine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H12N4O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02170m">
+            <rdf:Description rdf:about="#M_MAM02170m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ins"/>
@@ -60649,10 +60685,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02170e" sboTerm="SBO:0000247" id="MAM02170e" name="inosine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H12N4O5">
+      <species metaid="M_MAM02170e" sboTerm="SBO:0000247" id="M_MAM02170e" name="inosine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H12N4O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02170e">
+            <rdf:Description rdf:about="#M_MAM02170e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ins"/>
@@ -60669,10 +60705,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02171c" sboTerm="SBO:0000247" id="MAM02171c" name="inositol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H12O6">
+      <species metaid="M_MAM02171c" sboTerm="SBO:0000247" id="M_MAM02171c" name="inositol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H12O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02171c">
+            <rdf:Description rdf:about="#M_MAM02171c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/inost"/>
@@ -60689,10 +60725,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02171r" sboTerm="SBO:0000247" id="MAM02171r" name="inositol" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H12O6">
+      <species metaid="M_MAM02171r" sboTerm="SBO:0000247" id="M_MAM02171r" name="inositol" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H12O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02171r">
+            <rdf:Description rdf:about="#M_MAM02171r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/inost"/>
@@ -60709,10 +60745,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02171e" sboTerm="SBO:0000247" id="MAM02171e" name="inositol" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H12O6">
+      <species metaid="M_MAM02171e" sboTerm="SBO:0000247" id="M_MAM02171e" name="inositol" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H12O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02171e">
+            <rdf:Description rdf:about="#M_MAM02171e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/inost"/>
@@ -60729,10 +60765,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02172c" sboTerm="SBO:0000247" id="MAM02172c" name="inositol-1,3-bisphosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C6H10O12P2">
+      <species metaid="M_MAM02172c" sboTerm="SBO:0000247" id="M_MAM02172c" name="inositol-1,3-bisphosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C6H10O12P2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02172c">
+            <rdf:Description rdf:about="#M_MAM02172c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/mi13p"/>
@@ -60746,10 +60782,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02173c" sboTerm="SBO:0000247" id="MAM02173c" name="inositol-1-phosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H11O9P">
+      <species metaid="M_MAM02173c" sboTerm="SBO:0000247" id="M_MAM02173c" name="inositol-1-phosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H11O9P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02173c">
+            <rdf:Description rdf:about="#M_MAM02173c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/mi1p__D"/>
@@ -60763,10 +60799,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02173n" sboTerm="SBO:0000247" id="MAM02173n" name="inositol-1-phosphate" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H11O9P">
+      <species metaid="M_MAM02173n" sboTerm="SBO:0000247" id="M_MAM02173n" name="inositol-1-phosphate" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H11O9P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02173n">
+            <rdf:Description rdf:about="#M_MAM02173n">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/mi1p__D"/>
@@ -60780,10 +60816,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02174c" sboTerm="SBO:0000247" id="MAM02174c" name="iodide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="I">
+      <species metaid="M_MAM02174c" sboTerm="SBO:0000247" id="M_MAM02174c" name="iodide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="I">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02174c">
+            <rdf:Description rdf:about="#M_MAM02174c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/i"/>
@@ -60798,10 +60834,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02174r" sboTerm="SBO:0000247" id="MAM02174r" name="iodide" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="I">
+      <species metaid="M_MAM02174r" sboTerm="SBO:0000247" id="M_MAM02174r" name="iodide" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="I">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02174r">
+            <rdf:Description rdf:about="#M_MAM02174r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/i"/>
@@ -60816,10 +60852,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02174e" sboTerm="SBO:0000247" id="MAM02174e" name="iodide" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="I">
+      <species metaid="M_MAM02174e" sboTerm="SBO:0000247" id="M_MAM02174e" name="iodide" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="I">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02174e">
+            <rdf:Description rdf:about="#M_MAM02174e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/i"/>
@@ -60834,10 +60870,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02175c" sboTerm="SBO:0000247" id="MAM02175c" name="iodine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="I2">
+      <species metaid="M_MAM02175c" sboTerm="SBO:0000247" id="M_MAM02175c" name="iodine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="I2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02175c">
+            <rdf:Description rdf:about="#M_MAM02175c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/iodine"/>
@@ -60853,10 +60889,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02176c" sboTerm="SBO:0000247" id="MAM02176c" name="iso-A2E(11-cis)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C42H58NO">
+      <species metaid="M_MAM02176c" sboTerm="SBO:0000247" id="M_MAM02176c" name="iso-A2E(11-cis)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C42H58NO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02176c">
+            <rdf:Description rdf:about="#M_MAM02176c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/CE5776"/>
@@ -60870,10 +60906,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02177c" sboTerm="SBO:0000247" id="MAM02177c" name="iso-A2E(13-cis)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C42H58NO">
+      <species metaid="M_MAM02177c" sboTerm="SBO:0000247" id="M_MAM02177c" name="iso-A2E(13-cis)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C42H58NO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02177c">
+            <rdf:Description rdf:about="#M_MAM02177c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM156892"/>
@@ -60884,10 +60920,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02178c" sboTerm="SBO:0000247" id="MAM02178c" name="iso-A2E(9,13-di-cis)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C42H58NO">
+      <species metaid="M_MAM02178c" sboTerm="SBO:0000247" id="M_MAM02178c" name="iso-A2E(9,13-di-cis)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C42H58NO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02178c">
+            <rdf:Description rdf:about="#M_MAM02178c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM156893"/>
@@ -60898,10 +60934,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02179c" sboTerm="SBO:0000247" id="MAM02179c" name="iso-A2E(9-cis)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C42H58NO">
+      <species metaid="M_MAM02179c" sboTerm="SBO:0000247" id="M_MAM02179c" name="iso-A2E(9-cis)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C42H58NO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02179c">
+            <rdf:Description rdf:about="#M_MAM02179c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/CE5775"/>
@@ -60915,10 +60951,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02180m" sboTerm="SBO:0000247" id="MAM02180m" name="isobutyryl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C25H38N7O17P3S">
+      <species metaid="M_MAM02180m" sboTerm="SBO:0000247" id="M_MAM02180m" name="isobutyryl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C25H38N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02180m">
+            <rdf:Description rdf:about="#M_MAM02180m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ibcoa"/>
@@ -60934,10 +60970,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02181m" sboTerm="SBO:0000247" id="MAM02181m" name="isobutyrylglycine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H10NO3">
+      <species metaid="M_MAM02181m" sboTerm="SBO:0000247" id="M_MAM02181m" name="isobutyrylglycine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H10NO3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02181m">
+            <rdf:Description rdf:about="#M_MAM02181m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/hmdb/HMDB00730"/>
@@ -60950,10 +60986,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02182c" sboTerm="SBO:0000247" id="MAM02182c" name="isocaproic-aldehyde" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H12O">
+      <species metaid="M_MAM02182c" sboTerm="SBO:0000247" id="M_MAM02182c" name="isocaproic-aldehyde" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H12O">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02182c">
+            <rdf:Description rdf:about="#M_MAM02182c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/4mptnl"/>
@@ -60970,10 +61006,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02182m" sboTerm="SBO:0000247" id="MAM02182m" name="isocaproic-aldehyde" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H12O">
+      <species metaid="M_MAM02182m" sboTerm="SBO:0000247" id="M_MAM02182m" name="isocaproic-aldehyde" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H12O">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02182m">
+            <rdf:Description rdf:about="#M_MAM02182m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/4mptnl"/>
@@ -60990,10 +61026,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02182e" sboTerm="SBO:0000247" id="MAM02182e" name="isocaproic-aldehyde" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H12O">
+      <species metaid="M_MAM02182e" sboTerm="SBO:0000247" id="M_MAM02182e" name="isocaproic-aldehyde" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H12O">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02182e">
+            <rdf:Description rdf:about="#M_MAM02182e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/4mptnl"/>
@@ -61010,10 +61046,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02183c" sboTerm="SBO:0000247" id="MAM02183c" name="isocitrate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C6H5O7">
+      <species metaid="M_MAM02183c" sboTerm="SBO:0000247" id="M_MAM02183c" name="isocitrate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C6H5O7">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02183c">
+            <rdf:Description rdf:about="#M_MAM02183c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/icit"/>
@@ -61030,10 +61066,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02183m" sboTerm="SBO:0000247" id="MAM02183m" name="isocitrate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C6H5O7">
+      <species metaid="M_MAM02183m" sboTerm="SBO:0000247" id="M_MAM02183m" name="isocitrate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C6H5O7">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02183m">
+            <rdf:Description rdf:about="#M_MAM02183m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/icit"/>
@@ -61050,10 +61086,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02183x" sboTerm="SBO:0000247" id="MAM02183x" name="isocitrate" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C6H5O7">
+      <species metaid="M_MAM02183x" sboTerm="SBO:0000247" id="M_MAM02183x" name="isocitrate" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C6H5O7">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02183x">
+            <rdf:Description rdf:about="#M_MAM02183x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/icit"/>
@@ -61070,10 +61106,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02184c" sboTerm="SBO:0000247" id="MAM02184c" name="isoleucine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H13NO2">
+      <species metaid="M_MAM02184c" sboTerm="SBO:0000247" id="M_MAM02184c" name="isoleucine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H13NO2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02184c">
+            <rdf:Description rdf:about="#M_MAM02184c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ile__L"/>
@@ -61089,10 +61125,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02184l" sboTerm="SBO:0000247" id="MAM02184l" name="isoleucine" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H13NO2">
+      <species metaid="M_MAM02184l" sboTerm="SBO:0000247" id="M_MAM02184l" name="isoleucine" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H13NO2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02184l">
+            <rdf:Description rdf:about="#M_MAM02184l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ile__L"/>
@@ -61108,10 +61144,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02184m" sboTerm="SBO:0000247" id="MAM02184m" name="isoleucine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H13NO2">
+      <species metaid="M_MAM02184m" sboTerm="SBO:0000247" id="M_MAM02184m" name="isoleucine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H13NO2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02184m">
+            <rdf:Description rdf:about="#M_MAM02184m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ile__L"/>
@@ -61127,10 +61163,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02184e" sboTerm="SBO:0000247" id="MAM02184e" name="isoleucine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H13NO2">
+      <species metaid="M_MAM02184e" sboTerm="SBO:0000247" id="M_MAM02184e" name="isoleucine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H13NO2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02184e">
+            <rdf:Description rdf:about="#M_MAM02184e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ile__L"/>
@@ -61146,10 +61182,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02185e" sboTerm="SBO:0000247" id="MAM02185e" name="isomaltose" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C12H22O11">
+      <species metaid="M_MAM02185e" sboTerm="SBO:0000247" id="M_MAM02185e" name="isomaltose" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C12H22O11">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02185e">
+            <rdf:Description rdf:about="#M_MAM02185e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:28189"/>
@@ -61162,10 +61198,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02186c" sboTerm="SBO:0000247" id="MAM02186c" name="iso-nLc8Cer" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C73H125N4O43R">
+      <species metaid="M_MAM02186c" sboTerm="SBO:0000247" id="M_MAM02186c" name="iso-nLc8Cer" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C73H125N4O43R">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02186c">
+            <rdf:Description rdf:about="#M_MAM02186c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/G00078"/>
@@ -61177,10 +61213,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02187c" sboTerm="SBO:0000247" id="MAM02187c" name="isopentenyl-pPP" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C5H9O7P2">
+      <species metaid="M_MAM02187c" sboTerm="SBO:0000247" id="M_MAM02187c" name="isopentenyl-pPP" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C5H9O7P2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02187c">
+            <rdf:Description rdf:about="#M_MAM02187c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ipdp"/>
@@ -61196,10 +61232,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02187x" sboTerm="SBO:0000247" id="MAM02187x" name="isopentenyl-pPP" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C5H9O7P2">
+      <species metaid="M_MAM02187x" sboTerm="SBO:0000247" id="M_MAM02187x" name="isopentenyl-pPP" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C5H9O7P2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02187x">
+            <rdf:Description rdf:about="#M_MAM02187x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ipdp"/>
@@ -61215,10 +61251,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02188c" sboTerm="SBO:0000247" id="MAM02188c" name="isoputreanine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C7H17N2O2">
+      <species metaid="M_MAM02188c" sboTerm="SBO:0000247" id="M_MAM02188c" name="isoputreanine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C7H17N2O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02188c">
+            <rdf:Description rdf:about="#M_MAM02188c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/hmdb/HMDB06009"/>
@@ -61231,10 +61267,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02189m" sboTerm="SBO:0000247" id="MAM02189m" name="isovaleryl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C26H40N7O17P3S">
+      <species metaid="M_MAM02189m" sboTerm="SBO:0000247" id="M_MAM02189m" name="isovaleryl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C26H40N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02189m">
+            <rdf:Description rdf:about="#M_MAM02189m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ivcoa"/>
@@ -61250,10 +61286,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02190m" sboTerm="SBO:0000247" id="MAM02190m" name="isovalerylglycine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C7H12NO3">
+      <species metaid="M_MAM02190m" sboTerm="SBO:0000247" id="M_MAM02190m" name="isovalerylglycine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C7H12NO3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02190m">
+            <rdf:Description rdf:about="#M_MAM02190m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/hmdb/HMDB00678"/>
@@ -61266,10 +61302,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02191c" sboTerm="SBO:0000247" id="MAM02191c" name="itaconate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C5H4O4">
+      <species metaid="M_MAM02191c" sboTerm="SBO:0000247" id="M_MAM02191c" name="itaconate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C5H4O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02191c">
+            <rdf:Description rdf:about="#M_MAM02191c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/itacon"/>
@@ -61285,10 +61321,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02191m" sboTerm="SBO:0000247" id="MAM02191m" name="itaconate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C5H4O4">
+      <species metaid="M_MAM02191m" sboTerm="SBO:0000247" id="M_MAM02191m" name="itaconate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C5H4O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02191m">
+            <rdf:Description rdf:about="#M_MAM02191m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/itacon"/>
@@ -61304,10 +61340,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02191e" sboTerm="SBO:0000247" id="MAM02191e" name="itaconate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C5H4O4">
+      <species metaid="M_MAM02191e" sboTerm="SBO:0000247" id="M_MAM02191e" name="itaconate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C5H4O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02191e">
+            <rdf:Description rdf:about="#M_MAM02191e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/itacon"/>
@@ -61323,10 +61359,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02192m" sboTerm="SBO:0000247" id="MAM02192m" name="itaconyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C26H35N7O19P3S">
+      <species metaid="M_MAM02192m" sboTerm="SBO:0000247" id="M_MAM02192m" name="itaconyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C26H35N7O19P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02192m">
+            <rdf:Description rdf:about="#M_MAM02192m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/itaccoa"/>
@@ -61342,10 +61378,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02193c" sboTerm="SBO:0000247" id="MAM02193c" name="ITP" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C10H11N4O14P3">
+      <species metaid="M_MAM02193c" sboTerm="SBO:0000247" id="M_MAM02193c" name="ITP" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C10H11N4O14P3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02193c">
+            <rdf:Description rdf:about="#M_MAM02193c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/itp"/>
@@ -61360,10 +61396,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02193m" sboTerm="SBO:0000247" id="MAM02193m" name="ITP" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C10H11N4O14P3">
+      <species metaid="M_MAM02193m" sboTerm="SBO:0000247" id="M_MAM02193m" name="ITP" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C10H11N4O14P3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02193m">
+            <rdf:Description rdf:about="#M_MAM02193m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/itp"/>
@@ -61378,10 +61414,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02193n" sboTerm="SBO:0000247" id="MAM02193n" name="ITP" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C10H11N4O14P3">
+      <species metaid="M_MAM02193n" sboTerm="SBO:0000247" id="M_MAM02193n" name="ITP" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C10H11N4O14P3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02193n">
+            <rdf:Description rdf:about="#M_MAM02193n">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/itp"/>
@@ -61396,10 +61432,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02193e" sboTerm="SBO:0000247" id="MAM02193e" name="ITP" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C10H11N4O14P3">
+      <species metaid="M_MAM02193e" sboTerm="SBO:0000247" id="M_MAM02193e" name="ITP" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C10H11N4O14P3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02193e">
+            <rdf:Description rdf:about="#M_MAM02193e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/itp"/>
@@ -61414,10 +61450,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02194c" sboTerm="SBO:0000247" id="MAM02194c" name="IV2Fuc,III4Fuc-Lc4Cer" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C57H99N2O31R">
+      <species metaid="M_MAM02194c" sboTerm="SBO:0000247" id="M_MAM02194c" name="IV2Fuc,III4Fuc-Lc4Cer" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C57H99N2O31R">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02194c">
+            <rdf:Description rdf:about="#M_MAM02194c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/G00045"/>
@@ -61429,10 +61465,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02195c" sboTerm="SBO:0000247" id="MAM02195c" name="IV2Fuc-Lc4Cer" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C50H89N2O26RCO">
+      <species metaid="M_MAM02195c" sboTerm="SBO:0000247" id="M_MAM02195c" name="IV2Fuc-Lc4Cer" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C50H89N2O26RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02195c">
+            <rdf:Description rdf:about="#M_MAM02195c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:28743"/>
@@ -61446,10 +61482,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02196c" sboTerm="SBO:0000247" id="MAM02196c" name="IV2Fuc-nLc4Cer" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C51H89N2O27R">
+      <species metaid="M_MAM02196c" sboTerm="SBO:0000247" id="M_MAM02196c" name="IV2Fuc-nLc4Cer" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C51H89N2O27R">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02196c">
+            <rdf:Description rdf:about="#M_MAM02196c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/G00055"/>
@@ -61461,10 +61497,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02197c" sboTerm="SBO:0000247" id="MAM02197c" name="IV3GalNAca-Gb4Cer" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C53H92N3O28R">
+      <species metaid="M_MAM02197c" sboTerm="SBO:0000247" id="M_MAM02197c" name="IV3GalNAca-Gb4Cer" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C53H92N3O28R">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02197c">
+            <rdf:Description rdf:about="#M_MAM02197c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/G00095"/>
@@ -61477,10 +61513,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02198c" sboTerm="SBO:0000247" id="MAM02198c" name="IV3Neu5Ac,III4Fuc-Lc4Cer" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C61H105N3O34RCO">
+      <species metaid="M_MAM02198c" sboTerm="SBO:0000247" id="M_MAM02198c" name="IV3Neu5Ac,III4Fuc-Lc4Cer" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C61H105N3O34RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02198c">
+            <rdf:Description rdf:about="#M_MAM02198c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/fucacngalacglcgalgluside_hs"/>
@@ -61492,10 +61528,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02198g" sboTerm="SBO:0000247" id="MAM02198g" name="IV3Neu5Ac,III4Fuc-Lc4Cer" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C61H105N3O34RCO">
+      <species metaid="M_MAM02198g" sboTerm="SBO:0000247" id="M_MAM02198g" name="IV3Neu5Ac,III4Fuc-Lc4Cer" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C61H105N3O34RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02198g">
+            <rdf:Description rdf:about="#M_MAM02198g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/fucacngalacglcgalgluside_hs"/>
@@ -61507,10 +61543,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02198e" sboTerm="SBO:0000247" id="MAM02198e" name="IV3Neu5Ac,III4Fuc-Lc4Cer" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C61H105N3O34RCO">
+      <species metaid="M_MAM02198e" sboTerm="SBO:0000247" id="M_MAM02198e" name="IV3Neu5Ac,III4Fuc-Lc4Cer" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C61H105N3O34RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02198e">
+            <rdf:Description rdf:about="#M_MAM02198e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/fucacngalacglcgalgluside_hs"/>
@@ -61522,10 +61558,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02199c" sboTerm="SBO:0000247" id="MAM02199c" name="IV3NeuAc,III3Fuc-nLc4Cer" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C61H105N3O34RCO">
+      <species metaid="M_MAM02199c" sboTerm="SBO:0000247" id="M_MAM02199c" name="IV3NeuAc,III3Fuc-nLc4Cer" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C61H105N3O34RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02199c">
+            <rdf:Description rdf:about="#M_MAM02199c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/fucacngal14acglcgalgluside_hs"/>
@@ -61538,10 +61574,10 @@
           </rdf:RDF>
         </annotation>
       </species>
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+      <species metaid="M_MAM02199g" sboTerm="SBO:0000247" id="M_MAM02199g" name="IV3NeuAc,III3Fuc-nLc4Cer" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C61H105N3O34RCO">
         <annotation>
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-            <rdf:Description rdf:about="#MAM02199g">
+            <rdf:Description rdf:about="#M_MAM02199g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/fucacngal14acglcgalgluside_hs"/>
@@ -61554,10 +61590,10 @@
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-      <species metaid="MAM02199e" sboTerm="SBO:0000247" id="MAM02199e" name="IV3NeuAc,III3Fuc-nLc4Cer" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C61H105N3O34RCO">
+      <species metaid="M_MAM02199e" sboTerm="SBO:0000247" id="M_MAM02199e" name="IV3NeuAc,III3Fuc-nLc4Cer" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C61H105N3O34RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02199e">
+            <rdf:Description rdf:about="#M_MAM02199e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/fucacngal14acglcgalgluside_hs"/>
@@ -61570,10 +61606,10 @@
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-      <species metaid="MAM02200c" sboTerm="SBO:0000247" id="MAM02200c" name="K+" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="K">
+      <species metaid="M_MAM02200c" sboTerm="SBO:0000247" id="M_MAM02200c" name="K+" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="K">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02200c">
+            <rdf:Description rdf:about="#M_MAM02200c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/k"/>
@@ -61589,10 +61625,10 @@
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-      <species metaid="MAM02200g" sboTerm="SBO:0000247" id="MAM02200g" name="K+" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="K">
+      <species metaid="M_MAM02200g" sboTerm="SBO:0000247" id="M_MAM02200g" name="K+" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="K">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02200g">
+            <rdf:Description rdf:about="#M_MAM02200g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/k"/>
@@ -61608,10 +61644,10 @@
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         </annotation>
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-      <species metaid="MAM02200e" sboTerm="SBO:0000247" id="MAM02200e" name="K+" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="K">
+      <species metaid="M_MAM02200e" sboTerm="SBO:0000247" id="M_MAM02200e" name="K+" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="K">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02200e">
+            <rdf:Description rdf:about="#M_MAM02200e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/k"/>
@@ -61627,10 +61663,10 @@
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-      <species metaid="MAM02201g" sboTerm="SBO:0000247" id="MAM02201g" name="keratan sulfate I biosynthesis, precursor 1" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C79H129N5O57X">
+      <species metaid="M_MAM02201g" sboTerm="SBO:0000247" id="M_MAM02201g" name="keratan sulfate I biosynthesis, precursor 1" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C79H129N5O57X">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02201g">
+            <rdf:Description rdf:about="#M_MAM02201g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ksi_pre1"/>
@@ -61642,10 +61678,10 @@
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         </annotation>
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-      <species metaid="MAM02202g" sboTerm="SBO:0000247" id="MAM02202g" name="keratan sulfate I biosynthesis, precursor 10" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C129H209N9O98S2X">
+      <species metaid="M_MAM02202g" sboTerm="SBO:0000247" id="M_MAM02202g" name="keratan sulfate I biosynthesis, precursor 10" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C129H209N9O98S2X">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02202g">
+            <rdf:Description rdf:about="#M_MAM02202g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ksi_pre10"/>
@@ -61657,10 +61693,10 @@
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         </annotation>
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-      <species metaid="MAM02203g" sboTerm="SBO:0000247" id="MAM02203g" name="keratan sulfate I biosynthesis, precursor 11" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C129H208N9O101S3X">
+      <species metaid="M_MAM02203g" sboTerm="SBO:0000247" id="M_MAM02203g" name="keratan sulfate I biosynthesis, precursor 11" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C129H208N9O101S3X">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02203g">
+            <rdf:Description rdf:about="#M_MAM02203g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ksi_pre11"/>
@@ -61672,10 +61708,10 @@
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         </annotation>
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-      <species metaid="MAM02204g" sboTerm="SBO:0000247" id="MAM02204g" name="keratan sulfate I biosynthesis, precursor 12" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C135H218N9O106S3X">
+      <species metaid="M_MAM02204g" sboTerm="SBO:0000247" id="M_MAM02204g" name="keratan sulfate I biosynthesis, precursor 12" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C135H218N9O106S3X">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02204g">
+            <rdf:Description rdf:about="#M_MAM02204g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ksi_pre12"/>
@@ -61687,10 +61723,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM02205g" sboTerm="SBO:0000247" id="MAM02205g" name="keratan sulfate I biosynthesis, precursor 13" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C143H231N10O111S3X">
+      <species metaid="M_MAM02205g" sboTerm="SBO:0000247" id="M_MAM02205g" name="keratan sulfate I biosynthesis, precursor 13" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C143H231N10O111S3X">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02205g">
+            <rdf:Description rdf:about="#M_MAM02205g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ksi_pre13"/>
@@ -61702,10 +61738,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02206g" sboTerm="SBO:0000247" id="MAM02206g" name="keratan sulfate I biosynthesis, precursor 14" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C143H230N10O114S4X">
+      <species metaid="M_MAM02206g" sboTerm="SBO:0000247" id="M_MAM02206g" name="keratan sulfate I biosynthesis, precursor 14" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C143H230N10O114S4X">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02206g">
+            <rdf:Description rdf:about="#M_MAM02206g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ksi_pre14"/>
@@ -61717,10 +61753,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02207g" sboTerm="SBO:0000247" id="MAM02207g" name="keratan sulfate I biosynthesis, precursor 15" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C149H240N10O119S4X">
+      <species metaid="M_MAM02207g" sboTerm="SBO:0000247" id="M_MAM02207g" name="keratan sulfate I biosynthesis, precursor 15" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C149H240N10O119S4X">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02207g">
+            <rdf:Description rdf:about="#M_MAM02207g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ksi_pre15"/>
@@ -61732,10 +61768,10 @@
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         </annotation>
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-      <species metaid="MAM02208g" sboTerm="SBO:0000247" id="MAM02208g" name="keratan sulfate I biosynthesis, precursor 16" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C157H253N11O124S4X">
+      <species metaid="M_MAM02208g" sboTerm="SBO:0000247" id="M_MAM02208g" name="keratan sulfate I biosynthesis, precursor 16" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C157H253N11O124S4X">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02208g">
+            <rdf:Description rdf:about="#M_MAM02208g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ksi_pre16"/>
@@ -61747,10 +61783,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM02209g" sboTerm="SBO:0000247" id="MAM02209g" name="keratan sulfate I biosynthesis, precursor 17" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-6" fbc:chemicalFormula="C157H252N11O127S5X">
+      <species metaid="M_MAM02209g" sboTerm="SBO:0000247" id="M_MAM02209g" name="keratan sulfate I biosynthesis, precursor 17" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-6" fbc:chemicalFormula="C157H252N11O127S5X">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02209g">
+            <rdf:Description rdf:about="#M_MAM02209g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ksi_pre17"/>
@@ -61762,10 +61798,10 @@
           </rdf:RDF>
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-      <species metaid="MAM02210g" sboTerm="SBO:0000247" id="MAM02210g" name="keratan sulfate I biosynthesis, precursor 18" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-6" fbc:chemicalFormula="C163H262N11O132S5X">
+      <species metaid="M_MAM02210g" sboTerm="SBO:0000247" id="M_MAM02210g" name="keratan sulfate I biosynthesis, precursor 18" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-6" fbc:chemicalFormula="C163H262N11O132S5X">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02210g">
+            <rdf:Description rdf:about="#M_MAM02210g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ksi_pre18"/>
@@ -61777,10 +61813,10 @@
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         </annotation>
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-      <species metaid="MAM02211g" sboTerm="SBO:0000247" id="MAM02211g" name="keratan sulfate I biosynthesis, precursor 19" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-6" fbc:chemicalFormula="C171H275N12O137S5X">
+      <species metaid="M_MAM02211g" sboTerm="SBO:0000247" id="M_MAM02211g" name="keratan sulfate I biosynthesis, precursor 19" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-6" fbc:chemicalFormula="C171H275N12O137S5X">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02211g">
+            <rdf:Description rdf:about="#M_MAM02211g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ksi_pre19"/>
@@ -61792,10 +61828,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02212g" sboTerm="SBO:0000247" id="MAM02212g" name="keratan sulfate I biosynthesis, precursor 2" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C87H142N6O62X">
+      <species metaid="M_MAM02212g" sboTerm="SBO:0000247" id="M_MAM02212g" name="keratan sulfate I biosynthesis, precursor 2" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C87H142N6O62X">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02212g">
+            <rdf:Description rdf:about="#M_MAM02212g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ksi_pre2"/>
@@ -61807,10 +61843,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM02213g" sboTerm="SBO:0000247" id="MAM02213g" name="keratan sulfate I biosynthesis, precursor 20" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-7" fbc:chemicalFormula="C171H274N12O140S6X">
+      <species metaid="M_MAM02213g" sboTerm="SBO:0000247" id="M_MAM02213g" name="keratan sulfate I biosynthesis, precursor 20" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-7" fbc:chemicalFormula="C171H274N12O140S6X">
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+            <rdf:Description rdf:about="#M_MAM02213g">
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@@ -61822,10 +61858,10 @@
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+      <species metaid="M_MAM02214g" sboTerm="SBO:0000247" id="M_MAM02214g" name="keratan sulfate I biosynthesis, precursor 21" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-7" fbc:chemicalFormula="C177H284N12O145S6X">
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+            <rdf:Description rdf:about="#M_MAM02214g">
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@@ -61837,10 +61873,10 @@
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+      <species metaid="M_MAM02215g" sboTerm="SBO:0000247" id="M_MAM02215g" name="keratan sulfate I biosynthesis, precursor 22" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-7" fbc:chemicalFormula="C185H297N13O150S6X">
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-            <rdf:Description rdf:about="#MAM02215g">
+            <rdf:Description rdf:about="#M_MAM02215g">
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@@ -61852,10 +61888,10 @@
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+      <species metaid="M_MAM02216g" sboTerm="SBO:0000247" id="M_MAM02216g" name="keratan sulfate I biosynthesis, precursor 23" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-8" fbc:chemicalFormula="C185H296N13O153S7X">
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-            <rdf:Description rdf:about="#MAM02216g">
+            <rdf:Description rdf:about="#M_MAM02216g">
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@@ -61867,10 +61903,10 @@
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+      <species metaid="M_MAM02217g" sboTerm="SBO:0000247" id="M_MAM02217g" name="keratan sulfate I biosynthesis, precursor 24" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-8" fbc:chemicalFormula="C191H306N13O158S7X">
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-            <rdf:Description rdf:about="#MAM02217g">
+            <rdf:Description rdf:about="#M_MAM02217g">
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@@ -61882,10 +61918,10 @@
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-      <species metaid="MAM02218g" sboTerm="SBO:0000247" id="MAM02218g" name="keratan sulfate I biosynthesis, precursor 25" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-8" fbc:chemicalFormula="C199H319N14O163S7X">
+      <species metaid="M_MAM02218g" sboTerm="SBO:0000247" id="M_MAM02218g" name="keratan sulfate I biosynthesis, precursor 25" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-8" fbc:chemicalFormula="C199H319N14O163S7X">
         <annotation>
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-            <rdf:Description rdf:about="#MAM02218g">
+            <rdf:Description rdf:about="#M_MAM02218g">
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@@ -61897,10 +61933,10 @@
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-      <species metaid="MAM02219g" sboTerm="SBO:0000247" id="MAM02219g" name="keratan sulfate I biosynthesis, precursor 26" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-9" fbc:chemicalFormula="C199H318N14O166S8X">
+      <species metaid="M_MAM02219g" sboTerm="SBO:0000247" id="M_MAM02219g" name="keratan sulfate I biosynthesis, precursor 26" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-9" fbc:chemicalFormula="C199H318N14O166S8X">
         <annotation>
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-            <rdf:Description rdf:about="#MAM02219g">
+            <rdf:Description rdf:about="#M_MAM02219g">
               <bqbiol:is>
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                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ksi_pre26"/>
@@ -61912,10 +61948,10 @@
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+      <species metaid="M_MAM02220g" sboTerm="SBO:0000247" id="M_MAM02220g" name="keratan sulfate I biosynthesis, precursor 27" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-9" fbc:chemicalFormula="C205H328N14O171S8X">
         <annotation>
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-            <rdf:Description rdf:about="#MAM02220g">
+            <rdf:Description rdf:about="#M_MAM02220g">
               <bqbiol:is>
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                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ksi_pre27"/>
@@ -61927,10 +61963,10 @@
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+      <species metaid="M_MAM02221g" sboTerm="SBO:0000247" id="M_MAM02221g" name="keratan sulfate I biosynthesis, precursor 28" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-9" fbc:chemicalFormula="C213H341N15O176S8X">
         <annotation>
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-            <rdf:Description rdf:about="#MAM02221g">
+            <rdf:Description rdf:about="#M_MAM02221g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ksi_pre28"/>
@@ -61942,10 +61978,10 @@
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+      <species metaid="M_MAM02222g" sboTerm="SBO:0000247" id="M_MAM02222g" name="keratan sulfate I biosynthesis, precursor 29" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-10" fbc:chemicalFormula="C213H340N15O179S9X">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02222g">
+            <rdf:Description rdf:about="#M_MAM02222g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ksi_pre29"/>
@@ -61957,10 +61993,10 @@
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+      <species metaid="M_MAM02223g" sboTerm="SBO:0000247" id="M_MAM02223g" name="keratan sulfate I biosynthesis, precursor 3" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C93H152N6O67X">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02223g">
+            <rdf:Description rdf:about="#M_MAM02223g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ksi_pre3"/>
@@ -61972,10 +62008,10 @@
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-      <species metaid="MAM02224g" sboTerm="SBO:0000247" id="MAM02224g" name="keratan sulfate I biosynthesis, precursor 30" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-10" fbc:chemicalFormula="C219H350N15O184S9X">
+      <species metaid="M_MAM02224g" sboTerm="SBO:0000247" id="M_MAM02224g" name="keratan sulfate I biosynthesis, precursor 30" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-10" fbc:chemicalFormula="C219H350N15O184S9X">
         <annotation>
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-            <rdf:Description rdf:about="#MAM02224g">
+            <rdf:Description rdf:about="#M_MAM02224g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ksi_pre30"/>
@@ -61987,10 +62023,10 @@
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-      <species metaid="MAM02225g" sboTerm="SBO:0000247" id="MAM02225g" name="keratan sulfate I biosynthesis, precursor 31" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-10" fbc:chemicalFormula="C227H363N16O189S9X">
+      <species metaid="M_MAM02225g" sboTerm="SBO:0000247" id="M_MAM02225g" name="keratan sulfate I biosynthesis, precursor 31" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-10" fbc:chemicalFormula="C227H363N16O189S9X">
         <annotation>
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-            <rdf:Description rdf:about="#MAM02225g">
+            <rdf:Description rdf:about="#M_MAM02225g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ksi_pre31"/>
@@ -62002,10 +62038,10 @@
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-      <species metaid="MAM02226g" sboTerm="SBO:0000247" id="MAM02226g" name="keratan sulfate I biosynthesis, precursor 32" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-11" fbc:chemicalFormula="C227H362N16O192S10X">
+      <species metaid="M_MAM02226g" sboTerm="SBO:0000247" id="M_MAM02226g" name="keratan sulfate I biosynthesis, precursor 32" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-11" fbc:chemicalFormula="C227H362N16O192S10X">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02226g">
+            <rdf:Description rdf:about="#M_MAM02226g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ksi_pre32"/>
@@ -62017,10 +62053,10 @@
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-      <species metaid="MAM02227g" sboTerm="SBO:0000247" id="MAM02227g" name="keratan sulfate I biosynthesis, precursor 33" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-11" fbc:chemicalFormula="C233H372N16O197S10X">
+      <species metaid="M_MAM02227g" sboTerm="SBO:0000247" id="M_MAM02227g" name="keratan sulfate I biosynthesis, precursor 33" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-11" fbc:chemicalFormula="C233H372N16O197S10X">
         <annotation>
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-            <rdf:Description rdf:about="#MAM02227g">
+            <rdf:Description rdf:about="#M_MAM02227g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ksi_pre33"/>
@@ -62032,10 +62068,10 @@
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-      <species metaid="MAM02228g" sboTerm="SBO:0000247" id="MAM02228g" name="keratan sulfate I biosynthesis, precursor 34" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-11" fbc:chemicalFormula="C241H385N17O202S10X">
+      <species metaid="M_MAM02228g" sboTerm="SBO:0000247" id="M_MAM02228g" name="keratan sulfate I biosynthesis, precursor 34" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-11" fbc:chemicalFormula="C241H385N17O202S10X">
         <annotation>
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-            <rdf:Description rdf:about="#MAM02228g">
+            <rdf:Description rdf:about="#M_MAM02228g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ksi_pre34"/>
@@ -62047,10 +62083,10 @@
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-      <species metaid="MAM02229g" sboTerm="SBO:0000247" id="MAM02229g" name="keratan sulfate I biosynthesis, precursor 35" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-12" fbc:chemicalFormula="C241H384N17O205S11X">
+      <species metaid="M_MAM02229g" sboTerm="SBO:0000247" id="M_MAM02229g" name="keratan sulfate I biosynthesis, precursor 35" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-12" fbc:chemicalFormula="C241H384N17O205S11X">
         <annotation>
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-            <rdf:Description rdf:about="#MAM02229g">
+            <rdf:Description rdf:about="#M_MAM02229g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ksi_pre35"/>
@@ -62062,10 +62098,10 @@
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+      <species metaid="M_MAM02230g" sboTerm="SBO:0000247" id="M_MAM02230g" name="keratan sulfate I biosynthesis, precursor 36" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-12" fbc:chemicalFormula="C247H394N17O210S11X">
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-            <rdf:Description rdf:about="#MAM02230g">
+            <rdf:Description rdf:about="#M_MAM02230g">
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@@ -62077,10 +62113,10 @@
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-      <species metaid="MAM02231g" sboTerm="SBO:0000247" id="MAM02231g" name="keratan sulfate I biosynthesis, precursor 4" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C101H165N7O72X">
+      <species metaid="M_MAM02231g" sboTerm="SBO:0000247" id="M_MAM02231g" name="keratan sulfate I biosynthesis, precursor 4" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C101H165N7O72X">
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-            <rdf:Description rdf:about="#MAM02231g">
+            <rdf:Description rdf:about="#M_MAM02231g">
               <bqbiol:is>
                 <rdf:Bag>
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@@ -62092,10 +62128,10 @@
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-      <species metaid="MAM02232g" sboTerm="SBO:0000247" id="MAM02232g" name="keratan sulfate I biosynthesis, precursor 5" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C101H164N7O75SX">
+      <species metaid="M_MAM02232g" sboTerm="SBO:0000247" id="M_MAM02232g" name="keratan sulfate I biosynthesis, precursor 5" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C101H164N7O75SX">
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-            <rdf:Description rdf:about="#MAM02232g">
+            <rdf:Description rdf:about="#M_MAM02232g">
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                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ksi_pre5"/>
@@ -62107,10 +62143,10 @@
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-      <species metaid="MAM02233g" sboTerm="SBO:0000247" id="MAM02233g" name="keratan sulfate I biosynthesis, precursor 6" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C107H174N7O80SX">
+      <species metaid="M_MAM02233g" sboTerm="SBO:0000247" id="M_MAM02233g" name="keratan sulfate I biosynthesis, precursor 6" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C107H174N7O80SX">
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-            <rdf:Description rdf:about="#MAM02233g">
+            <rdf:Description rdf:about="#M_MAM02233g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ksi_pre6"/>
@@ -62122,10 +62158,10 @@
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-      <species metaid="MAM02234g" sboTerm="SBO:0000247" id="MAM02234g" name="keratan sulfate I biosynthesis, precursor 7" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C115H187N8O85SX">
+      <species metaid="M_MAM02234g" sboTerm="SBO:0000247" id="M_MAM02234g" name="keratan sulfate I biosynthesis, precursor 7" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C115H187N8O85SX">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02234g">
+            <rdf:Description rdf:about="#M_MAM02234g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ksi_pre7"/>
@@ -62137,10 +62173,10 @@
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-      <species metaid="MAM02235g" sboTerm="SBO:0000247" id="MAM02235g" name="keratan sulfate I biosynthesis, precursor 8" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C115H186N8O88S2X">
+      <species metaid="M_MAM02235g" sboTerm="SBO:0000247" id="M_MAM02235g" name="keratan sulfate I biosynthesis, precursor 8" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C115H186N8O88S2X">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02235g">
+            <rdf:Description rdf:about="#M_MAM02235g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ksi_pre8"/>
@@ -62152,10 +62188,10 @@
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-      <species metaid="MAM02236g" sboTerm="SBO:0000247" id="MAM02236g" name="keratan sulfate I biosynthesis, precursor 9" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C121H196N8O93S2X">
+      <species metaid="M_MAM02236g" sboTerm="SBO:0000247" id="M_MAM02236g" name="keratan sulfate I biosynthesis, precursor 9" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C121H196N8O93S2X">
         <annotation>
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-            <rdf:Description rdf:about="#MAM02236g">
+            <rdf:Description rdf:about="#M_MAM02236g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ksi_pre9"/>
@@ -62167,10 +62203,10 @@
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-      <species metaid="MAM02237l" sboTerm="SBO:0000247" id="MAM02237l" name="keratan sulfate I, degradation product 1" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-13" fbc:chemicalFormula="C241H383N17O209S12X">
+      <species metaid="M_MAM02237l" sboTerm="SBO:0000247" id="M_MAM02237l" name="keratan sulfate I, degradation product 1" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-13" fbc:chemicalFormula="C241H383N17O209S12X">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02237l">
+            <rdf:Description rdf:about="#M_MAM02237l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ksi_deg1"/>
@@ -62182,10 +62218,10 @@
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-      <species metaid="MAM02237e" sboTerm="SBO:0000247" id="MAM02237e" name="keratan sulfate I, degradation product 1" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-13" fbc:chemicalFormula="C241H383N17O209S12X">
+      <species metaid="M_MAM02237e" sboTerm="SBO:0000247" id="M_MAM02237e" name="keratan sulfate I, degradation product 1" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-13" fbc:chemicalFormula="C241H383N17O209S12X">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02237e">
+            <rdf:Description rdf:about="#M_MAM02237e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ksi_deg1"/>
@@ -62197,10 +62233,10 @@
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         </annotation>
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-      <species metaid="MAM02238l" sboTerm="SBO:0000247" id="MAM02238l" name="keratan sulfate I, degradation product 10" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-9" fbc:chemicalFormula="C188H302N13O163S9">
+      <species metaid="M_MAM02238l" sboTerm="SBO:0000247" id="M_MAM02238l" name="keratan sulfate I, degradation product 10" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-9" fbc:chemicalFormula="C188H302N13O163S9">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02238l">
+            <rdf:Description rdf:about="#M_MAM02238l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ksi_deg10"/>
@@ -62212,10 +62248,10 @@
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         </annotation>
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-      <species metaid="MAM02239l" sboTerm="SBO:0000247" id="MAM02239l" name="keratan sulfate I, degradation product 11" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-9" fbc:chemicalFormula="C180H289N12O158S9">
+      <species metaid="M_MAM02239l" sboTerm="SBO:0000247" id="M_MAM02239l" name="keratan sulfate I, degradation product 11" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-9" fbc:chemicalFormula="C180H289N12O158S9">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02239l">
+            <rdf:Description rdf:about="#M_MAM02239l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ksi_deg11"/>
@@ -62227,10 +62263,10 @@
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         </annotation>
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-      <species metaid="MAM02240l" sboTerm="SBO:0000247" id="MAM02240l" name="keratan sulfate I, degradation product 12" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-9" fbc:chemicalFormula="C174H279N12O153S9">
+      <species metaid="M_MAM02240l" sboTerm="SBO:0000247" id="M_MAM02240l" name="keratan sulfate I, degradation product 12" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-9" fbc:chemicalFormula="C174H279N12O153S9">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02240l">
+            <rdf:Description rdf:about="#M_MAM02240l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ksi_deg12"/>
@@ -62242,10 +62278,10 @@
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-      <species metaid="MAM02241l" sboTerm="SBO:0000247" id="MAM02241l" name="keratan sulfate I, degradation product 13" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-8" fbc:chemicalFormula="C174H280N12O150S8">
+      <species metaid="M_MAM02241l" sboTerm="SBO:0000247" id="M_MAM02241l" name="keratan sulfate I, degradation product 13" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-8" fbc:chemicalFormula="C174H280N12O150S8">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02241l">
+            <rdf:Description rdf:about="#M_MAM02241l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ksi_deg13"/>
@@ -62257,10 +62293,10 @@
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-      <species metaid="MAM02242l" sboTerm="SBO:0000247" id="MAM02242l" name="keratan sulfate I, degradation product 14" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-8" fbc:chemicalFormula="C166H267N11O145S8">
+      <species metaid="M_MAM02242l" sboTerm="SBO:0000247" id="M_MAM02242l" name="keratan sulfate I, degradation product 14" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-8" fbc:chemicalFormula="C166H267N11O145S8">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02242l">
+            <rdf:Description rdf:about="#M_MAM02242l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ksi_deg14"/>
@@ -62272,10 +62308,10 @@
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-      <species metaid="MAM02243l" sboTerm="SBO:0000247" id="MAM02243l" name="keratan sulfate I, degradation product 15" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-8" fbc:chemicalFormula="C160H257N11O140S8">
+      <species metaid="M_MAM02243l" sboTerm="SBO:0000247" id="M_MAM02243l" name="keratan sulfate I, degradation product 15" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-8" fbc:chemicalFormula="C160H257N11O140S8">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02243l">
+            <rdf:Description rdf:about="#M_MAM02243l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ksi_deg15"/>
@@ -62287,10 +62323,10 @@
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-      <species metaid="MAM02244l" sboTerm="SBO:0000247" id="MAM02244l" name="keratan sulfate I, degradation product 16" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-7" fbc:chemicalFormula="C160H258N11O137S7">
+      <species metaid="M_MAM02244l" sboTerm="SBO:0000247" id="M_MAM02244l" name="keratan sulfate I, degradation product 16" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-7" fbc:chemicalFormula="C160H258N11O137S7">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02244l">
+            <rdf:Description rdf:about="#M_MAM02244l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ksi_deg16"/>
@@ -62302,10 +62338,10 @@
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-      <species metaid="MAM02245l" sboTerm="SBO:0000247" id="MAM02245l" name="keratan sulfate I, degradation product 17" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-7" fbc:chemicalFormula="C152H245N10O132S7">
+      <species metaid="M_MAM02245l" sboTerm="SBO:0000247" id="M_MAM02245l" name="keratan sulfate I, degradation product 17" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-7" fbc:chemicalFormula="C152H245N10O132S7">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02245l">
+            <rdf:Description rdf:about="#M_MAM02245l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ksi_deg17"/>
@@ -62317,10 +62353,10 @@
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+      <species metaid="M_MAM02246l" sboTerm="SBO:0000247" id="M_MAM02246l" name="keratan sulfate I, degradation product 18" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-7" fbc:chemicalFormula="C146H235N10O127S7">
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@@ -62332,10 +62368,10 @@
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+      <species metaid="M_MAM02247l" sboTerm="SBO:0000247" id="M_MAM02247l" name="keratan sulfate I, degradation product 19" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-6" fbc:chemicalFormula="C146H236N10O124S6">
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+            <rdf:Description rdf:about="#M_MAM02247l">
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@@ -62347,10 +62383,10 @@
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+      <species metaid="M_MAM02248l" sboTerm="SBO:0000247" id="M_MAM02248l" name="keratan sulfate I, degradation product 2" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-13" fbc:chemicalFormula="C241H384N17O210S12">
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+            <rdf:Description rdf:about="#M_MAM02248l">
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@@ -62362,10 +62398,10 @@
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+      <species metaid="M_MAM02249l" sboTerm="SBO:0000247" id="M_MAM02249l" name="keratan sulfate I, degradation product 20" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-6" fbc:chemicalFormula="C138H223N9O119S6">
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+            <rdf:Description rdf:about="#M_MAM02249l">
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@@ -62377,10 +62413,10 @@
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+      <species metaid="M_MAM02250l" sboTerm="SBO:0000247" id="M_MAM02250l" name="keratan sulfate I, degradation product 21" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-6" fbc:chemicalFormula="C132H213N9O114S6">
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+            <rdf:Description rdf:about="#M_MAM02250l">
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@@ -62392,10 +62428,10 @@
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+      <species metaid="M_MAM02251l" sboTerm="SBO:0000247" id="M_MAM02251l" name="keratan sulfate I, degradation product 22" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C132H214N9O111S5">
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+            <rdf:Description rdf:about="#M_MAM02251l">
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@@ -62407,10 +62443,10 @@
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+      <species metaid="M_MAM02252l" sboTerm="SBO:0000247" id="M_MAM02252l" name="keratan sulfate I, degradation product 23" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C124H201N8O106S5">
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+            <rdf:Description rdf:about="#M_MAM02252l">
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@@ -62422,10 +62458,10 @@
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+      <species metaid="M_MAM02253l" sboTerm="SBO:0000247" id="M_MAM02253l" name="keratan sulfate I, degradation product 24" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C118H191N8O101S5">
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+            <rdf:Description rdf:about="#M_MAM02253l">
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@@ -62437,10 +62473,10 @@
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+      <species metaid="M_MAM02254l" sboTerm="SBO:0000247" id="M_MAM02254l" name="keratan sulfate I, degradation product 25" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C118H192N8O98S4">
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+            <rdf:Description rdf:about="#M_MAM02254l">
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@@ -62452,10 +62488,10 @@
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+      <species metaid="M_MAM02255l" sboTerm="SBO:0000247" id="M_MAM02255l" name="keratan sulfate I, degradation product 26" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C110H179N7O93S4">
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+            <rdf:Description rdf:about="#M_MAM02255l">
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@@ -62467,10 +62503,10 @@
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+      <species metaid="M_MAM02256l" sboTerm="SBO:0000247" id="M_MAM02256l" name="keratan sulfate I, degradation product 27" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C104H169N7O88S4">
         <annotation>
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+            <rdf:Description rdf:about="#M_MAM02256l">
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@@ -62482,10 +62518,10 @@
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+      <species metaid="M_MAM02257l" sboTerm="SBO:0000247" id="M_MAM02257l" name="keratan sulfate I, degradation product 28" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C104H170N7O85S3">
         <annotation>
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+            <rdf:Description rdf:about="#M_MAM02257l">
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@@ -62497,10 +62533,10 @@
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+      <species metaid="M_MAM02258l" sboTerm="SBO:0000247" id="M_MAM02258l" name="keratan sulfate I, degradation product 29" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C96H157N6O80S3">
         <annotation>
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+            <rdf:Description rdf:about="#M_MAM02258l">
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@@ -62512,10 +62548,10 @@
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+      <species metaid="M_MAM02259l" sboTerm="SBO:0000247" id="M_MAM02259l" name="keratan sulfate I, degradation product 3" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-13" fbc:chemicalFormula="C233H371N16O205S12">
         <annotation>
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+            <rdf:Description rdf:about="#M_MAM02259l">
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@@ -62527,10 +62563,10 @@
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+      <species metaid="M_MAM02260l" sboTerm="SBO:0000247" id="M_MAM02260l" name="keratan sulfate I, degradation product 30" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C90H147N6O75S3">
         <annotation>
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+            <rdf:Description rdf:about="#M_MAM02260l">
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@@ -62542,10 +62578,10 @@
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+      <species metaid="M_MAM02261l" sboTerm="SBO:0000247" id="M_MAM02261l" name="keratan sulfate I, degradation product 31" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C90H148N6O72S2">
         <annotation>
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+            <rdf:Description rdf:about="#M_MAM02261l">
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@@ -62557,10 +62593,10 @@
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+      <species metaid="M_MAM02262l" sboTerm="SBO:0000247" id="M_MAM02262l" name="keratan sulfate I, degradation product 32" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C82H135N5O67S2">
         <annotation>
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+            <rdf:Description rdf:about="#M_MAM02262l">
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@@ -62572,10 +62608,10 @@
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+      <species metaid="M_MAM02263l" sboTerm="SBO:0000247" id="M_MAM02263l" name="keratan sulfate I, degradation product 33" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C76H125N5O62S2">
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+            <rdf:Description rdf:about="#M_MAM02263l">
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@@ -62587,10 +62623,10 @@
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+      <species metaid="M_MAM02264l" sboTerm="SBO:0000247" id="M_MAM02264l" name="keratan sulfate I, degradation product 34" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C76H126N5O59S1">
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+            <rdf:Description rdf:about="#M_MAM02264l">
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@@ -62602,10 +62638,10 @@
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+      <species metaid="M_MAM02265l" sboTerm="SBO:0000247" id="M_MAM02265l" name="keratan sulfate I, degradation product 35" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C68H113N4O54S1">
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+            <rdf:Description rdf:about="#M_MAM02265l">
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@@ -62617,10 +62653,10 @@
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+      <species metaid="M_MAM02266l" sboTerm="SBO:0000247" id="M_MAM02266l" name="keratan sulfate I, degradation product 36" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C62H103N4O49S1">
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+            <rdf:Description rdf:about="#M_MAM02266l">
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@@ -62632,10 +62668,10 @@
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+      <species metaid="M_MAM02267l" sboTerm="SBO:0000247" id="M_MAM02267l" name="keratan sulfate I, degradation product 37" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C62H104N4O46">
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+            <rdf:Description rdf:about="#M_MAM02267l">
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@@ -62647,10 +62683,10 @@
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+      <species metaid="M_MAM02268l" sboTerm="SBO:0000247" id="M_MAM02268l" name="keratan sulfate I, degradation product 38" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C54H91N3O41">
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+            <rdf:Description rdf:about="#M_MAM02268l">
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@@ -62662,10 +62698,10 @@
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+      <species metaid="M_MAM02269l" sboTerm="SBO:0000247" id="M_MAM02269l" name="keratan sulfate I, degradation product 39" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C48H81N3O36">
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+            <rdf:Description rdf:about="#M_MAM02269l">
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@@ -62677,10 +62713,10 @@
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+      <species metaid="M_MAM02270l" sboTerm="SBO:0000247" id="M_MAM02270l" name="keratan sulfate I, degradation product 4" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-12" fbc:chemicalFormula="C222H355N15O197S12">
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+            <rdf:Description rdf:about="#M_MAM02270l">
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@@ -62692,10 +62728,10 @@
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+      <species metaid="M_MAM02271l" sboTerm="SBO:0000247" id="M_MAM02271l" name="keratan sulfate I, degradation product 40" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C40H68N2O31">
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+            <rdf:Description rdf:about="#M_MAM02271l">
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@@ -62707,10 +62743,10 @@
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+      <species metaid="M_MAM02272l" sboTerm="SBO:0000247" id="M_MAM02272l" name="keratan sulfate I, degradation product 41" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C34H58N2O26">
         <annotation>
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+            <rdf:Description rdf:about="#M_MAM02272l">
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@@ -62722,10 +62758,10 @@
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+      <species metaid="M_MAM02273l" sboTerm="SBO:0000247" id="M_MAM02273l" name="keratan sulfate I, degradation product 5" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-11" fbc:chemicalFormula="C222H356N15O194S11">
         <annotation>
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+            <rdf:Description rdf:about="#M_MAM02273l">
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@@ -62737,10 +62773,10 @@
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+      <species metaid="M_MAM02274l" sboTerm="SBO:0000247" id="M_MAM02274l" name="keratan sulfate I, degradation product 6" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-11" fbc:chemicalFormula="C210H336N15O184S11">
         <annotation>
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+            <rdf:Description rdf:about="#M_MAM02274l">
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@@ -62752,10 +62788,10 @@
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+      <species metaid="M_MAM02275l" sboTerm="SBO:0000247" id="M_MAM02275l" name="keratan sulfate I, degradation product 7" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-10" fbc:chemicalFormula="C210H337N15O181S10">
         <annotation>
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+            <rdf:Description rdf:about="#M_MAM02275l">
               <bqbiol:is>
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@@ -62767,10 +62803,10 @@
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+      <species metaid="M_MAM02276l" sboTerm="SBO:0000247" id="M_MAM02276l" name="keratan sulfate I, degradation product 8" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-10" fbc:chemicalFormula="C194H311N13O171S10">
         <annotation>
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+            <rdf:Description rdf:about="#M_MAM02276l">
               <bqbiol:is>
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@@ -62782,10 +62818,10 @@
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+      <species metaid="M_MAM02277l" sboTerm="SBO:0000247" id="M_MAM02277l" name="keratan sulfate I, degradation product 9" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-10" fbc:chemicalFormula="C188H301N13O166S10">
         <annotation>
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+            <rdf:Description rdf:about="#M_MAM02277l">
               <bqbiol:is>
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@@ -62797,10 +62833,10 @@
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+      <species metaid="M_MAM02278g" sboTerm="SBO:0000247" id="M_MAM02278g" name="keratan sulfate I" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-13" fbc:chemicalFormula="C247H393N17O213S12X">
         <annotation>
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+            <rdf:Description rdf:about="#M_MAM02278g">
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@@ -62812,10 +62848,10 @@
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+      <species metaid="M_MAM02278l" sboTerm="SBO:0000247" id="M_MAM02278l" name="keratan sulfate I" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-13" fbc:chemicalFormula="C247H393N17O213S12X">
         <annotation>
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+            <rdf:Description rdf:about="#M_MAM02278l">
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@@ -62827,10 +62863,10 @@
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+      <species metaid="M_MAM02278e" sboTerm="SBO:0000247" id="M_MAM02278e" name="keratan sulfate I" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-13" fbc:chemicalFormula="C247H393N17O213S12X">
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+            <rdf:Description rdf:about="#M_MAM02278e">
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@@ -62842,10 +62878,10 @@
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+      <species metaid="M_MAM02279l" sboTerm="SBO:0000247" id="M_MAM02279l" name="keratan sulfate II (core 2-linked), degradation product 1" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C70H113N5O59S3X">
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+            <rdf:Description rdf:about="#M_MAM02279l">
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@@ -62857,10 +62893,10 @@
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-      <species metaid="MAM02280l" sboTerm="SBO:0000247" id="MAM02280l" name="keratan sulfate II (core 2-linked), degradation product 2" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C70H114N5O56S2X">
+      <species metaid="M_MAM02280l" sboTerm="SBO:0000247" id="M_MAM02280l" name="keratan sulfate II (core 2-linked), degradation product 2" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C70H114N5O56S2X">
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-            <rdf:Description rdf:about="#MAM02280l">
+            <rdf:Description rdf:about="#M_MAM02280l">
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@@ -62872,10 +62908,10 @@
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+      <species metaid="M_MAM02281l" sboTerm="SBO:0000247" id="M_MAM02281l" name="keratan sulfate II (core 2-linked), degradation product 3" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C58H94N5O46S2X">
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-            <rdf:Description rdf:about="#MAM02281l">
+            <rdf:Description rdf:about="#M_MAM02281l">
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@@ -62887,10 +62923,10 @@
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+      <species metaid="M_MAM02282l" sboTerm="SBO:0000247" id="M_MAM02282l" name="keratan sulfate II (core 2-linked), degradation product 4" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C58H95N5O43SX">
         <annotation>
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-            <rdf:Description rdf:about="#MAM02282l">
+            <rdf:Description rdf:about="#M_MAM02282l">
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@@ -62902,10 +62938,10 @@
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+      <species metaid="M_MAM02283l" sboTerm="SBO:0000247" id="M_MAM02283l" name="keratan sulfate II (core 2-linked), degradation product 5" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C50H82N4O38SX">
         <annotation>
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-            <rdf:Description rdf:about="#MAM02283l">
+            <rdf:Description rdf:about="#M_MAM02283l">
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                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ksii_core2_deg5"/>
@@ -62917,10 +62953,10 @@
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+      <species metaid="M_MAM02284l" sboTerm="SBO:0000247" id="M_MAM02284l" name="keratan sulfate II (core 2-linked), degradation product 6" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C44H72N4O33SX">
         <annotation>
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-            <rdf:Description rdf:about="#MAM02284l">
+            <rdf:Description rdf:about="#M_MAM02284l">
               <bqbiol:is>
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                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ksii_core2_deg6"/>
@@ -62932,10 +62968,10 @@
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+      <species metaid="M_MAM02285l" sboTerm="SBO:0000247" id="M_MAM02285l" name="keratan sulfate II (core 2-linked), degradation product 7" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C44H73N4O30X">
         <annotation>
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-            <rdf:Description rdf:about="#MAM02285l">
+            <rdf:Description rdf:about="#M_MAM02285l">
               <bqbiol:is>
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                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ksii_core2_deg7"/>
@@ -62947,10 +62983,10 @@
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-      <species metaid="MAM02286l" sboTerm="SBO:0000247" id="MAM02286l" name="keratan sulfate II (core 2-linked), degradation product 8" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C36H60N3O25X">
+      <species metaid="M_MAM02286l" sboTerm="SBO:0000247" id="M_MAM02286l" name="keratan sulfate II (core 2-linked), degradation product 8" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C36H60N3O25X">
         <annotation>
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-            <rdf:Description rdf:about="#MAM02286l">
+            <rdf:Description rdf:about="#M_MAM02286l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ksii_core2_deg8"/>
@@ -62962,10 +62998,10 @@
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-      <species metaid="MAM02287l" sboTerm="SBO:0000247" id="MAM02287l" name="keratan sulfate II (core 2-linked), degradation product 9" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C30H50N3O20X">
+      <species metaid="M_MAM02287l" sboTerm="SBO:0000247" id="M_MAM02287l" name="keratan sulfate II (core 2-linked), degradation product 9" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C30H50N3O20X">
         <annotation>
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-            <rdf:Description rdf:about="#MAM02287l">
+            <rdf:Description rdf:about="#M_MAM02287l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ksii_core2_deg9"/>
@@ -62977,10 +63013,10 @@
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-      <species metaid="MAM02288g" sboTerm="SBO:0000247" id="MAM02288g" name="keratan sulfate II (core 2-linked)" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C81H129N6O67S3X">
+      <species metaid="M_MAM02288g" sboTerm="SBO:0000247" id="M_MAM02288g" name="keratan sulfate II (core 2-linked)" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C81H129N6O67S3X">
         <annotation>
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-            <rdf:Description rdf:about="#MAM02288g">
+            <rdf:Description rdf:about="#M_MAM02288g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ksii_core2"/>
@@ -62992,10 +63028,10 @@
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-      <species metaid="MAM02288l" sboTerm="SBO:0000247" id="MAM02288l" name="keratan sulfate II (core 2-linked)" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C81H129N6O67S3X">
+      <species metaid="M_MAM02288l" sboTerm="SBO:0000247" id="M_MAM02288l" name="keratan sulfate II (core 2-linked)" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C81H129N6O67S3X">
         <annotation>
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-            <rdf:Description rdf:about="#MAM02288l">
+            <rdf:Description rdf:about="#M_MAM02288l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ksii_core2"/>
@@ -63007,10 +63043,10 @@
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-      <species metaid="MAM02288e" sboTerm="SBO:0000247" id="MAM02288e" name="keratan sulfate II (core 2-linked)" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C81H129N6O67S3X">
+      <species metaid="M_MAM02288e" sboTerm="SBO:0000247" id="M_MAM02288e" name="keratan sulfate II (core 2-linked)" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C81H129N6O67S3X">
         <annotation>
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-            <rdf:Description rdf:about="#MAM02288e">
+            <rdf:Description rdf:about="#M_MAM02288e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ksii_core2"/>
@@ -63022,10 +63058,10 @@
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-      <species metaid="MAM02289g" sboTerm="SBO:0000247" id="MAM02289g" name="keratan sulfate II (core 4-linked), biosynthesis, precursor 1" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C36H60N3O25X">
+      <species metaid="M_MAM02289g" sboTerm="SBO:0000247" id="M_MAM02289g" name="keratan sulfate II (core 4-linked), biosynthesis, precursor 1" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C36H60N3O25X">
         <annotation>
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-            <rdf:Description rdf:about="#MAM02289g">
+            <rdf:Description rdf:about="#M_MAM02289g">
               <bqbiol:is>
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                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ksii_core4_pre1"/>
@@ -63037,10 +63073,10 @@
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-      <species metaid="MAM02290g" sboTerm="SBO:0000247" id="MAM02290g" name="keratan sulfate II (core 4-linked), biosynthesis, precursor 10" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C89H143N7O69S2X">
+      <species metaid="M_MAM02290g" sboTerm="SBO:0000247" id="M_MAM02290g" name="keratan sulfate II (core 4-linked), biosynthesis, precursor 10" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C89H143N7O69S2X">
         <annotation>
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-            <rdf:Description rdf:about="#MAM02290g">
+            <rdf:Description rdf:about="#M_MAM02290g">
               <bqbiol:is>
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                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ksii_core4_pre10"/>
@@ -63052,10 +63088,10 @@
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-      <species metaid="MAM02291g" sboTerm="SBO:0000247" id="MAM02291g" name="keratan sulfate II (core 4-linked), biosynthesis, precursor 2" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C47H76N4O33X">
+      <species metaid="M_MAM02291g" sboTerm="SBO:0000247" id="M_MAM02291g" name="keratan sulfate II (core 4-linked), biosynthesis, precursor 2" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C47H76N4O33X">
         <annotation>
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-            <rdf:Description rdf:about="#MAM02291g">
+            <rdf:Description rdf:about="#M_MAM02291g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ksii_core4_pre2"/>
@@ -63067,10 +63103,10 @@
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+      <species metaid="M_MAM02292g" sboTerm="SBO:0000247" id="M_MAM02292g" name="keratan sulfate II (core 4-linked), biosynthesis, precursor 3" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C55H89N5O38X">
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+            <rdf:Description rdf:about="#M_MAM02292g">
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@@ -63082,10 +63118,10 @@
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+      <species metaid="M_MAM02293g" sboTerm="SBO:0000247" id="M_MAM02293g" name="keratan sulfate II (core 4-linked), biosynthesis, precursor 4" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C61H99N5O43X">
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+            <rdf:Description rdf:about="#M_MAM02293g">
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@@ -63097,10 +63133,10 @@
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+      <species metaid="M_MAM02294g" sboTerm="SBO:0000247" id="M_MAM02294g" name="keratan sulfate II (core 4-linked), biosynthesis, precursor 5" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C69H112N6O48X">
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-            <rdf:Description rdf:about="#MAM02294g">
+            <rdf:Description rdf:about="#M_MAM02294g">
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@@ -63112,10 +63148,10 @@
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+      <species metaid="M_MAM02295g" sboTerm="SBO:0000247" id="M_MAM02295g" name="keratan sulfate II (core 4-linked), biosynthesis, precursor 6" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C69H111N6O51SX">
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-            <rdf:Description rdf:about="#MAM02295g">
+            <rdf:Description rdf:about="#M_MAM02295g">
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@@ -63127,10 +63163,10 @@
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+      <species metaid="M_MAM02296g" sboTerm="SBO:0000247" id="M_MAM02296g" name="keratan sulfate II (core 4-linked), biosynthesis, precursor 7" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C75H121N6O56SX">
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-            <rdf:Description rdf:about="#MAM02296g">
+            <rdf:Description rdf:about="#M_MAM02296g">
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@@ -63142,10 +63178,10 @@
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+      <species metaid="M_MAM02297g" sboTerm="SBO:0000247" id="M_MAM02297g" name="keratan sulfate II (core 4-linked), biosynthesis, precursor 8" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C83H134N7O61SX">
         <annotation>
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-            <rdf:Description rdf:about="#MAM02297g">
+            <rdf:Description rdf:about="#M_MAM02297g">
               <bqbiol:is>
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@@ -63157,10 +63193,10 @@
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+      <species metaid="M_MAM02298g" sboTerm="SBO:0000247" id="M_MAM02298g" name="keratan sulfate II (core 4-linked), biosynthesis, precursor 9" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C83H133N7O64S2X">
         <annotation>
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-            <rdf:Description rdf:about="#MAM02298g">
+            <rdf:Description rdf:about="#M_MAM02298g">
               <bqbiol:is>
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                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ksii_core4_pre9"/>
@@ -63172,10 +63208,10 @@
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-      <species metaid="MAM02299l" sboTerm="SBO:0000247" id="MAM02299l" name="keratan sulfate II (core 4-linked), degradation product 1" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C78H126N6O64S3X">
+      <species metaid="M_MAM02299l" sboTerm="SBO:0000247" id="M_MAM02299l" name="keratan sulfate II (core 4-linked), degradation product 1" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C78H126N6O64S3X">
         <annotation>
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-            <rdf:Description rdf:about="#MAM02299l">
+            <rdf:Description rdf:about="#M_MAM02299l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ksii_core4_deg1"/>
@@ -63187,10 +63223,10 @@
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-      <species metaid="MAM02300l" sboTerm="SBO:0000247" id="MAM02300l" name="keratan sulfate II (core 4-linked), degradation product 2" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C78H127N6O61S2X">
+      <species metaid="M_MAM02300l" sboTerm="SBO:0000247" id="M_MAM02300l" name="keratan sulfate II (core 4-linked), degradation product 2" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C78H127N6O61S2X">
         <annotation>
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-            <rdf:Description rdf:about="#MAM02300l">
+            <rdf:Description rdf:about="#M_MAM02300l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ksii_core4_deg2"/>
@@ -63202,10 +63238,10 @@
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-      <species metaid="MAM02301l" sboTerm="SBO:0000247" id="MAM02301l" name="keratan sulfate II (core 4-linked), degradation product 3" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C66H107N6O51S2X">
+      <species metaid="M_MAM02301l" sboTerm="SBO:0000247" id="M_MAM02301l" name="keratan sulfate II (core 4-linked), degradation product 3" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C66H107N6O51S2X">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02301l">
+            <rdf:Description rdf:about="#M_MAM02301l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ksii_core4_deg3"/>
@@ -63217,10 +63253,10 @@
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-      <species metaid="MAM02302l" sboTerm="SBO:0000247" id="MAM02302l" name="keratan sulfate II (core 4-linked), degradation product 4" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C66H108N6O48SX">
+      <species metaid="M_MAM02302l" sboTerm="SBO:0000247" id="M_MAM02302l" name="keratan sulfate II (core 4-linked), degradation product 4" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C66H108N6O48SX">
         <annotation>
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-            <rdf:Description rdf:about="#MAM02302l">
+            <rdf:Description rdf:about="#M_MAM02302l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ksii_core4_deg4"/>
@@ -63232,10 +63268,10 @@
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-      <species metaid="MAM02303g" sboTerm="SBO:0000247" id="MAM02303g" name="keratan sulfate II (core 4-linked)" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C89H142N7O72S3X">
+      <species metaid="M_MAM02303g" sboTerm="SBO:0000247" id="M_MAM02303g" name="keratan sulfate II (core 4-linked)" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C89H142N7O72S3X">
         <annotation>
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-            <rdf:Description rdf:about="#MAM02303g">
+            <rdf:Description rdf:about="#M_MAM02303g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ksii_core4"/>
@@ -63247,10 +63283,10 @@
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-      <species metaid="MAM02303l" sboTerm="SBO:0000247" id="MAM02303l" name="keratan sulfate II (core 4-linked)" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C89H142N7O72S3X">
+      <species metaid="M_MAM02303l" sboTerm="SBO:0000247" id="M_MAM02303l" name="keratan sulfate II (core 4-linked)" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C89H142N7O72S3X">
         <annotation>
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-            <rdf:Description rdf:about="#MAM02303l">
+            <rdf:Description rdf:about="#M_MAM02303l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ksii_core4"/>
@@ -63262,10 +63298,10 @@
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-      <species metaid="MAM02303e" sboTerm="SBO:0000247" id="MAM02303e" name="keratan sulfate II (core 4-linked)" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C89H142N7O72S3X">
+      <species metaid="M_MAM02303e" sboTerm="SBO:0000247" id="M_MAM02303e" name="keratan sulfate II (core 4-linked)" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C89H142N7O72S3X">
         <annotation>
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-            <rdf:Description rdf:about="#MAM02303e">
+            <rdf:Description rdf:about="#M_MAM02303e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ksii_core4"/>
@@ -63277,10 +63313,10 @@
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-      <species metaid="MAM02304g" sboTerm="SBO:0000247" id="MAM02304g" name="keratan sulfate II biosynthesis, precursor 1" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C33H53N3O23X">
+      <species metaid="M_MAM02304g" sboTerm="SBO:0000247" id="M_MAM02304g" name="keratan sulfate II biosynthesis, precursor 1" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C33H53N3O23X">
         <annotation>
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-            <rdf:Description rdf:about="#MAM02304g">
+            <rdf:Description rdf:about="#M_MAM02304g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ksii_core2_pre1"/>
@@ -63292,10 +63328,10 @@
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-      <species metaid="MAM02305g" sboTerm="SBO:0000247" id="MAM02305g" name="keratan sulfate II biosynthesis, precursor 10" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C81H130N6O64S2X">
+      <species metaid="M_MAM02305g" sboTerm="SBO:0000247" id="M_MAM02305g" name="keratan sulfate II biosynthesis, precursor 10" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C81H130N6O64S2X">
         <annotation>
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-            <rdf:Description rdf:about="#MAM02305g">
+            <rdf:Description rdf:about="#M_MAM02305g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ksii_core2_pre10"/>
@@ -63307,10 +63343,10 @@
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-      <species metaid="MAM02306g" sboTerm="SBO:0000247" id="MAM02306g" name="keratan sulfate II biosynthesis, precursor 2" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C39H63N3O28X">
+      <species metaid="M_MAM02306g" sboTerm="SBO:0000247" id="M_MAM02306g" name="keratan sulfate II biosynthesis, precursor 2" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C39H63N3O28X">
         <annotation>
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-            <rdf:Description rdf:about="#MAM02306g">
+            <rdf:Description rdf:about="#M_MAM02306g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ksii_core2_pre2"/>
@@ -63322,10 +63358,10 @@
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-      <species metaid="MAM02307g" sboTerm="SBO:0000247" id="MAM02307g" name="keratan sulfate II biosynthesis, precursor 3" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C47H76N4O33X">
+      <species metaid="M_MAM02307g" sboTerm="SBO:0000247" id="M_MAM02307g" name="keratan sulfate II biosynthesis, precursor 3" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C47H76N4O33X">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02307g">
+            <rdf:Description rdf:about="#M_MAM02307g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ksii_core2_pre3"/>
@@ -63337,10 +63373,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02308g" sboTerm="SBO:0000247" id="MAM02308g" name="keratan sulfate II biosynthesis, precursor 4" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C53H86N4O38X">
+      <species metaid="M_MAM02308g" sboTerm="SBO:0000247" id="M_MAM02308g" name="keratan sulfate II biosynthesis, precursor 4" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C53H86N4O38X">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02308g">
+            <rdf:Description rdf:about="#M_MAM02308g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ksii_core2_pre4"/>
@@ -63352,10 +63388,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02309g" sboTerm="SBO:0000247" id="MAM02309g" name="keratan sulfate II biosynthesis, precursor 5" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C61H99N5O43X">
+      <species metaid="M_MAM02309g" sboTerm="SBO:0000247" id="M_MAM02309g" name="keratan sulfate II biosynthesis, precursor 5" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C61H99N5O43X">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02309g">
+            <rdf:Description rdf:about="#M_MAM02309g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ksii_core2_pre5"/>
@@ -63367,10 +63403,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02310g" sboTerm="SBO:0000247" id="MAM02310g" name="keratan sulfate II biosynthesis, precursor 6" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C61H98N5O46SX">
+      <species metaid="M_MAM02310g" sboTerm="SBO:0000247" id="M_MAM02310g" name="keratan sulfate II biosynthesis, precursor 6" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C61H98N5O46SX">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02310g">
+            <rdf:Description rdf:about="#M_MAM02310g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ksii_core2_pre6"/>
@@ -63382,10 +63418,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02311g" sboTerm="SBO:0000247" id="MAM02311g" name="keratan sulfate II biosynthesis, precursor 7" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C67H108N5O51SX">
+      <species metaid="M_MAM02311g" sboTerm="SBO:0000247" id="M_MAM02311g" name="keratan sulfate II biosynthesis, precursor 7" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C67H108N5O51SX">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02311g">
+            <rdf:Description rdf:about="#M_MAM02311g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ksii_core2_pre7"/>
@@ -63397,10 +63433,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02312g" sboTerm="SBO:0000247" id="MAM02312g" name="keratan sulfate II biosynthesis, precursor 8" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C75H121N6O56SX">
+      <species metaid="M_MAM02312g" sboTerm="SBO:0000247" id="M_MAM02312g" name="keratan sulfate II biosynthesis, precursor 8" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C75H121N6O56SX">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02312g">
+            <rdf:Description rdf:about="#M_MAM02312g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ksii_core2_pre8"/>
@@ -63412,10 +63448,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02313g" sboTerm="SBO:0000247" id="MAM02313g" name="keratan sulfate II biosynthesis, precursor 9" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C75H120N6O59S2X">
+      <species metaid="M_MAM02313g" sboTerm="SBO:0000247" id="M_MAM02313g" name="keratan sulfate II biosynthesis, precursor 9" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C75H120N6O59S2X">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02313g">
+            <rdf:Description rdf:about="#M_MAM02313g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ksii_core2_pre9"/>
@@ -63427,10 +63463,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02314e" sboTerm="SBO:0000247" id="MAM02314e" name="kinetensin 1-3" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C15H31N6O4">
+      <species metaid="M_MAM02314e" sboTerm="SBO:0000247" id="M_MAM02314e" name="kinetensin 1-3" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C15H31N6O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02314e">
+            <rdf:Description rdf:about="#M_MAM02314e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM59129"/>
@@ -63442,10 +63478,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02315c" sboTerm="SBO:0000247" id="MAM02315c" name="kinetensin 1-7" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="C41H67N15O9">
+      <species metaid="M_MAM02315c" sboTerm="SBO:0000247" id="M_MAM02315c" name="kinetensin 1-7" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="C41H67N15O9">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02315c">
+            <rdf:Description rdf:about="#M_MAM02315c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM59130"/>
@@ -63457,10 +63493,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02316c" sboTerm="SBO:0000247" id="MAM02316c" name="kinetensin 1-8" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="C50H76N16O10">
+      <species metaid="M_MAM02316c" sboTerm="SBO:0000247" id="M_MAM02316c" name="kinetensin 1-8" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="C50H76N16O10">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02316c">
+            <rdf:Description rdf:about="#M_MAM02316c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM59131"/>
@@ -63472,10 +63508,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02317e" sboTerm="SBO:0000247" id="MAM02317e" name="kinetensin 4-8" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C35H47N10O7">
+      <species metaid="M_MAM02317e" sboTerm="SBO:0000247" id="M_MAM02317e" name="kinetensin 4-8" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C35H47N10O7">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02317e">
+            <rdf:Description rdf:about="#M_MAM02317e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM59133"/>
@@ -63487,10 +63523,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02318c" sboTerm="SBO:0000247" id="MAM02318c" name="kinetensin" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="C56H87N17O11">
+      <species metaid="M_MAM02318c" sboTerm="SBO:0000247" id="M_MAM02318c" name="kinetensin" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="C56H87N17O11">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02318c">
+            <rdf:Description rdf:about="#M_MAM02318c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM162968"/>
@@ -63502,10 +63538,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02318e" sboTerm="SBO:0000247" id="MAM02318e" name="kinetensin" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="C56H87N17O11">
+      <species metaid="M_MAM02318e" sboTerm="SBO:0000247" id="M_MAM02318e" name="kinetensin" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="C56H87N17O11">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02318e">
+            <rdf:Description rdf:about="#M_MAM02318e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM162968"/>
@@ -63517,10 +63553,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02319c" sboTerm="SBO:0000247" id="MAM02319c" name="kynurenine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H12N2O3">
+      <species metaid="M_MAM02319c" sboTerm="SBO:0000247" id="M_MAM02319c" name="kynurenine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H12N2O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02319c">
+            <rdf:Description rdf:about="#M_MAM02319c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/Lkynr"/>
@@ -63537,10 +63573,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02320c" sboTerm="SBO:0000247" id="MAM02320c" name="L-1-pyrroline-3-hydroxy-5-carboxylate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C5H6NO3">
+      <species metaid="M_MAM02320c" sboTerm="SBO:0000247" id="M_MAM02320c" name="L-1-pyrroline-3-hydroxy-5-carboxylate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C5H6NO3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02320c">
+            <rdf:Description rdf:about="#M_MAM02320c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/1p3h5c"/>
@@ -63555,10 +63591,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02320m" sboTerm="SBO:0000247" id="MAM02320m" name="L-1-pyrroline-3-hydroxy-5-carboxylate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C5H6NO3">
+      <species metaid="M_MAM02320m" sboTerm="SBO:0000247" id="M_MAM02320m" name="L-1-pyrroline-3-hydroxy-5-carboxylate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C5H6NO3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02320m">
+            <rdf:Description rdf:about="#M_MAM02320m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/1p3h5c"/>
@@ -63573,10 +63609,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02321m" sboTerm="SBO:0000247" id="MAM02321m" name="L-2-amino-3-oxobutanoic acid" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H7NO3">
+      <species metaid="M_MAM02321m" sboTerm="SBO:0000247" id="M_MAM02321m" name="L-2-amino-3-oxobutanoic acid" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H7NO3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02321m">
+            <rdf:Description rdf:about="#M_MAM02321m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/2aobut"/>
@@ -63593,10 +63629,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02322c" sboTerm="SBO:0000247" id="MAM02322c" name="L-2-aminoadipate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H10NO4">
+      <species metaid="M_MAM02322c" sboTerm="SBO:0000247" id="M_MAM02322c" name="L-2-aminoadipate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H10NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02322c">
+            <rdf:Description rdf:about="#M_MAM02322c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/L2aadp"/>
@@ -63612,10 +63648,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02322m" sboTerm="SBO:0000247" id="MAM02322m" name="L-2-aminoadipate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H10NO4">
+      <species metaid="M_MAM02322m" sboTerm="SBO:0000247" id="M_MAM02322m" name="L-2-aminoadipate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H10NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02322m">
+            <rdf:Description rdf:about="#M_MAM02322m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/L2aadp"/>
@@ -63631,10 +63667,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02323g" sboTerm="SBO:0000247" id="MAM02323g" name="l2fn2m2masn" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C68H113N4O49X">
+      <species metaid="M_MAM02323g" sboTerm="SBO:0000247" id="M_MAM02323g" name="l2fn2m2masn" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C68H113N4O49X">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02323g">
+            <rdf:Description rdf:about="#M_MAM02323g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/l2fn2m2masn"/>
@@ -63647,10 +63683,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02324l" sboTerm="SBO:0000247" id="MAM02324l" name="l2n2m2mn" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C54H91N3O41">
+      <species metaid="M_MAM02324l" sboTerm="SBO:0000247" id="M_MAM02324l" name="l2n2m2mn" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C54H91N3O41">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02324l">
+            <rdf:Description rdf:about="#M_MAM02324l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/l2n2m2mn"/>
@@ -63662,10 +63698,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02325c" sboTerm="SBO:0000247" id="MAM02325c" name="L-3-amino-isobutanoate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H9NO2">
+      <species metaid="M_MAM02325c" sboTerm="SBO:0000247" id="M_MAM02325c" name="L-3-amino-isobutanoate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H9NO2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02325c">
+            <rdf:Description rdf:about="#M_MAM02325c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/3aib"/>
@@ -63682,10 +63718,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02325m" sboTerm="SBO:0000247" id="MAM02325m" name="L-3-amino-isobutanoate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H9NO2">
+      <species metaid="M_MAM02325m" sboTerm="SBO:0000247" id="M_MAM02325m" name="L-3-amino-isobutanoate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H9NO2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02325m">
+            <rdf:Description rdf:about="#M_MAM02325m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/3aib"/>
@@ -63702,10 +63738,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02325e" sboTerm="SBO:0000247" id="MAM02325e" name="L-3-amino-isobutanoate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H9NO2">
+      <species metaid="M_MAM02325e" sboTerm="SBO:0000247" id="M_MAM02325e" name="L-3-amino-isobutanoate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H9NO2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02325e">
+            <rdf:Description rdf:about="#M_MAM02325e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/3aib"/>
@@ -63722,10 +63758,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02326e" sboTerm="SBO:0000247" id="MAM02326e" name="L-3-cyanoalanine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C4H5N2O2">
+      <species metaid="M_MAM02326e" sboTerm="SBO:0000247" id="M_MAM02326e" name="L-3-cyanoalanine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C4H5N2O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02326e">
+            <rdf:Description rdf:about="#M_MAM02326e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:16934"/>
@@ -63739,10 +63775,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02327m" sboTerm="SBO:0000247" id="MAM02327m" name="L-4-hydroxyglutamate semialdehyde" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H9NO4">
+      <species metaid="M_MAM02327m" sboTerm="SBO:0000247" id="M_MAM02327m" name="L-4-hydroxyglutamate semialdehyde" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H9NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02327m">
+            <rdf:Description rdf:about="#M_MAM02327m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/4hglusa"/>
@@ -63758,10 +63794,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02328c" sboTerm="SBO:0000247" id="MAM02328c" name="LacCer pool" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C31H56NO13R">
+      <species metaid="M_MAM02328c" sboTerm="SBO:0000247" id="M_MAM02328c" name="LacCer pool" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C31H56NO13R">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02328c">
+            <rdf:Description rdf:about="#M_MAM02328c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/galgluside_hs"/>
@@ -63777,10 +63813,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02328g" sboTerm="SBO:0000247" id="MAM02328g" name="LacCer pool" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C31H56NO13R">
+      <species metaid="M_MAM02328g" sboTerm="SBO:0000247" id="M_MAM02328g" name="LacCer pool" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C31H56NO13R">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02328g">
+            <rdf:Description rdf:about="#M_MAM02328g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/galgluside_hs"/>
@@ -63796,10 +63832,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02328l" sboTerm="SBO:0000247" id="MAM02328l" name="LacCer pool" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C31H56NO13R">
+      <species metaid="M_MAM02328l" sboTerm="SBO:0000247" id="M_MAM02328l" name="LacCer pool" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C31H56NO13R">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02328l">
+            <rdf:Description rdf:about="#M_MAM02328l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/galgluside_hs"/>
@@ -63815,10 +63851,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02328r" sboTerm="SBO:0000247" id="MAM02328r" name="LacCer pool" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C31H56NO13R">
+      <species metaid="M_MAM02328r" sboTerm="SBO:0000247" id="M_MAM02328r" name="LacCer pool" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C31H56NO13R">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02328r">
+            <rdf:Description rdf:about="#M_MAM02328r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/galgluside_hs"/>
@@ -63834,10 +63870,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02328e" sboTerm="SBO:0000247" id="MAM02328e" name="LacCer pool" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C31H56NO13R">
+      <species metaid="M_MAM02328e" sboTerm="SBO:0000247" id="M_MAM02328e" name="LacCer pool" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C31H56NO13R">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02328e">
+            <rdf:Description rdf:about="#M_MAM02328e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/galgluside_hs"/>
@@ -63853,10 +63889,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02329c" sboTerm="SBO:0000247" id="MAM02329c" name="lactaldehyde" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H6O2">
+      <species metaid="M_MAM02329c" sboTerm="SBO:0000247" id="M_MAM02329c" name="lactaldehyde" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H6O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02329c">
+            <rdf:Description rdf:about="#M_MAM02329c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/lald__L"/>
@@ -63871,10 +63907,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02329m" sboTerm="SBO:0000247" id="MAM02329m" name="lactaldehyde" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H6O2">
+      <species metaid="M_MAM02329m" sboTerm="SBO:0000247" id="M_MAM02329m" name="lactaldehyde" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H6O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02329m">
+            <rdf:Description rdf:about="#M_MAM02329m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/lald__L"/>
@@ -63889,10 +63925,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02330g" sboTerm="SBO:0000247" id="MAM02330g" name="lactoneotetraosylceramide" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C44H79N2O22RCO">
+      <species metaid="M_MAM02330g" sboTerm="SBO:0000247" id="M_MAM02330g" name="lactoneotetraosylceramide" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C44H79N2O22RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02330g">
+            <rdf:Description rdf:about="#M_MAM02330g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/gal14acglcgalgluside_hs"/>
@@ -63904,10 +63940,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02331c" sboTerm="SBO:0000247" id="MAM02331c" name="lacto-N-fucopentaosyl-III-ceramide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C50H89N2O26RCO">
+      <species metaid="M_MAM02331c" sboTerm="SBO:0000247" id="M_MAM02331c" name="lacto-N-fucopentaosyl-III-ceramide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C50H89N2O26RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02331c">
+            <rdf:Description rdf:about="#M_MAM02331c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/fucgal14acglcgalgluside_hs"/>
@@ -63919,10 +63955,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02331g" sboTerm="SBO:0000247" id="MAM02331g" name="lacto-N-fucopentaosyl-III-ceramide" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C50H89N2O26RCO">
+      <species metaid="M_MAM02331g" sboTerm="SBO:0000247" id="M_MAM02331g" name="lacto-N-fucopentaosyl-III-ceramide" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C50H89N2O26RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02331g">
+            <rdf:Description rdf:about="#M_MAM02331g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/fucgal14acglcgalgluside_hs"/>
@@ -63934,10 +63970,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02331e" sboTerm="SBO:0000247" id="MAM02331e" name="lacto-N-fucopentaosyl-III-ceramide" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C50H89N2O26RCO">
+      <species metaid="M_MAM02331e" sboTerm="SBO:0000247" id="M_MAM02331e" name="lacto-N-fucopentaosyl-III-ceramide" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C50H89N2O26RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02331e">
+            <rdf:Description rdf:about="#M_MAM02331e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/fucgal14acglcgalgluside_hs"/>
@@ -63949,10 +63985,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02332c" sboTerm="SBO:0000247" id="MAM02332c" name="lactose" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C12H22O11">
+      <species metaid="M_MAM02332c" sboTerm="SBO:0000247" id="M_MAM02332c" name="lactose" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C12H22O11">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02332c">
+            <rdf:Description rdf:about="#M_MAM02332c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/lcts"/>
@@ -63968,10 +64004,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02332g" sboTerm="SBO:0000247" id="MAM02332g" name="lactose" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C12H22O11">
+      <species metaid="M_MAM02332g" sboTerm="SBO:0000247" id="M_MAM02332g" name="lactose" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C12H22O11">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02332g">
+            <rdf:Description rdf:about="#M_MAM02332g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/lcts"/>
@@ -63987,10 +64023,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02332l" sboTerm="SBO:0000247" id="MAM02332l" name="lactose" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C12H22O11">
+      <species metaid="M_MAM02332l" sboTerm="SBO:0000247" id="M_MAM02332l" name="lactose" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C12H22O11">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02332l">
+            <rdf:Description rdf:about="#M_MAM02332l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/lcts"/>
@@ -64006,10 +64042,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02332e" sboTerm="SBO:0000247" id="MAM02332e" name="lactose" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C12H22O11">
+      <species metaid="M_MAM02332e" sboTerm="SBO:0000247" id="M_MAM02332e" name="lactose" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C12H22O11">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02332e">
+            <rdf:Description rdf:about="#M_MAM02332e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/lcts"/>
@@ -64025,10 +64061,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02333e" sboTerm="SBO:0000247" id="MAM02333e" name="lactose-6-phosphate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C12H21O14P">
+      <species metaid="M_MAM02333e" sboTerm="SBO:0000247" id="M_MAM02333e" name="lactose-6-phosphate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C12H21O14P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02333e">
+            <rdf:Description rdf:about="#M_MAM02333e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C05396"/>
@@ -64040,10 +64076,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02335c" sboTerm="SBO:0000247" id="MAM02335c" name="L-alanyl-tRNA(ala)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C3H7NOR">
+      <species metaid="M_MAM02335c" sboTerm="SBO:0000247" id="M_MAM02335c" name="L-alanyl-tRNA(ala)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C3H7NOR">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02335c">
+            <rdf:Description rdf:about="#M_MAM02335c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:17732"/>
@@ -64056,10 +64092,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02336c" sboTerm="SBO:0000247" id="MAM02336c" name="lanosterol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C30H50O">
+      <species metaid="M_MAM02336c" sboTerm="SBO:0000247" id="M_MAM02336c" name="lanosterol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C30H50O">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02336c">
+            <rdf:Description rdf:about="#M_MAM02336c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/lanost"/>
@@ -64077,10 +64113,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02337c" sboTerm="SBO:0000247" id="MAM02337c" name="L-arabinose" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H10O5">
+      <species metaid="M_MAM02337c" sboTerm="SBO:0000247" id="M_MAM02337c" name="L-arabinose" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H10O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02337c">
+            <rdf:Description rdf:about="#M_MAM02337c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/arab__L"/>
@@ -64096,10 +64132,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02337e" sboTerm="SBO:0000247" id="MAM02337e" name="L-arabinose" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H10O5">
+      <species metaid="M_MAM02337e" sboTerm="SBO:0000247" id="M_MAM02337e" name="L-arabinose" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H10O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02337e">
+            <rdf:Description rdf:about="#M_MAM02337e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/arab__L"/>
@@ -64115,10 +64151,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02338c" sboTerm="SBO:0000247" id="MAM02338c" name="L-arabitol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H12O5">
+      <species metaid="M_MAM02338c" sboTerm="SBO:0000247" id="M_MAM02338c" name="L-arabitol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H12O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02338c">
+            <rdf:Description rdf:about="#M_MAM02338c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/abt"/>
@@ -64134,10 +64170,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02338e" sboTerm="SBO:0000247" id="MAM02338e" name="L-arabitol" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H12O5">
+      <species metaid="M_MAM02338e" sboTerm="SBO:0000247" id="M_MAM02338e" name="L-arabitol" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H12O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02338e">
+            <rdf:Description rdf:about="#M_MAM02338e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/abt"/>
@@ -64153,10 +64189,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02339c" sboTerm="SBO:0000247" id="MAM02339c" name="L-arginyl-protein" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C6H13N4OX">
+      <species metaid="M_MAM02339c" sboTerm="SBO:0000247" id="M_MAM02339c" name="L-arginyl-protein" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C6H13N4OX">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02339c">
+            <rdf:Description rdf:about="#M_MAM02339c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C16739"/>
@@ -64168,10 +64204,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02340c" sboTerm="SBO:0000247" id="MAM02340c" name="L-arginyl-tRNA(arg)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="C6H15N4OR">
+      <species metaid="M_MAM02340c" sboTerm="SBO:0000247" id="M_MAM02340c" name="L-arginyl-tRNA(arg)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="C6H15N4OR">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02340c">
+            <rdf:Description rdf:about="#M_MAM02340c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:18366"/>
@@ -64184,10 +64220,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02341c" sboTerm="SBO:0000247" id="MAM02341c" name="L-asparaginyl-tRNA(asn)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C4H8N2O2R">
+      <species metaid="M_MAM02341c" sboTerm="SBO:0000247" id="M_MAM02341c" name="L-asparaginyl-tRNA(asn)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C4H8N2O2R">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02341c">
+            <rdf:Description rdf:about="#M_MAM02341c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:29265"/>
@@ -64200,10 +64236,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02342c" sboTerm="SBO:0000247" id="MAM02342c" name="L-aspartyl-tRNA(asp)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H6NO3R">
+      <species metaid="M_MAM02342c" sboTerm="SBO:0000247" id="M_MAM02342c" name="L-aspartyl-tRNA(asp)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H6NO3R">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02342c">
+            <rdf:Description rdf:about="#M_MAM02342c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:29158"/>
@@ -64216,10 +64252,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02343c" sboTerm="SBO:0000247" id="MAM02343c" name="lathosterol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H46O">
+      <species metaid="M_MAM02343c" sboTerm="SBO:0000247" id="M_MAM02343c" name="lathosterol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H46O">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02343c">
+            <rdf:Description rdf:about="#M_MAM02343c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/lthstrl"/>
@@ -64238,10 +64274,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02344c" sboTerm="SBO:0000247" id="MAM02344c" name="lauric acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C12H23O2">
+      <species metaid="M_MAM02344c" sboTerm="SBO:0000247" id="M_MAM02344c" name="lauric acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C12H23O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02344c">
+            <rdf:Description rdf:about="#M_MAM02344c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ddca"/>
@@ -64259,10 +64295,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02344l" sboTerm="SBO:0000247" id="MAM02344l" name="lauric acid" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C12H23O2">
+      <species metaid="M_MAM02344l" sboTerm="SBO:0000247" id="M_MAM02344l" name="lauric acid" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C12H23O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02344l">
+            <rdf:Description rdf:about="#M_MAM02344l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ddca"/>
@@ -64280,10 +64316,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02344r" sboTerm="SBO:0000247" id="MAM02344r" name="lauric acid" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C12H23O2">
+      <species metaid="M_MAM02344r" sboTerm="SBO:0000247" id="M_MAM02344r" name="lauric acid" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C12H23O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02344r">
+            <rdf:Description rdf:about="#M_MAM02344r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ddca"/>
@@ -64301,10 +64337,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02344e" sboTerm="SBO:0000247" id="MAM02344e" name="lauric acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C12H23O2">
+      <species metaid="M_MAM02344e" sboTerm="SBO:0000247" id="M_MAM02344e" name="lauric acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C12H23O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02344e">
+            <rdf:Description rdf:about="#M_MAM02344e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ddca"/>
@@ -64322,10 +64358,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02345c" sboTerm="SBO:0000247" id="MAM02345c" name="lauroyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C33H54N7O17P3S">
+      <species metaid="M_MAM02345c" sboTerm="SBO:0000247" id="M_MAM02345c" name="lauroyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C33H54N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02345c">
+            <rdf:Description rdf:about="#M_MAM02345c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ddcacoa"/>
@@ -64342,10 +64378,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02345m" sboTerm="SBO:0000247" id="MAM02345m" name="lauroyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C33H54N7O17P3S">
+      <species metaid="M_MAM02345m" sboTerm="SBO:0000247" id="M_MAM02345m" name="lauroyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C33H54N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02345m">
+            <rdf:Description rdf:about="#M_MAM02345m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ddcacoa"/>
@@ -64362,10 +64398,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02345x" sboTerm="SBO:0000247" id="MAM02345x" name="lauroyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C33H54N7O17P3S">
+      <species metaid="M_MAM02345x" sboTerm="SBO:0000247" id="M_MAM02345x" name="lauroyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C33H54N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02345x">
+            <rdf:Description rdf:about="#M_MAM02345x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ddcacoa"/>
@@ -64382,10 +64418,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02345r" sboTerm="SBO:0000247" id="MAM02345r" name="lauroyl-CoA" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C33H54N7O17P3S">
+      <species metaid="M_MAM02345r" sboTerm="SBO:0000247" id="M_MAM02345r" name="lauroyl-CoA" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C33H54N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02345r">
+            <rdf:Description rdf:about="#M_MAM02345r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ddcacoa"/>
@@ -64402,10 +64438,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02346c" sboTerm="SBO:0000247" id="MAM02346c" name="lc3Cer" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C38H69N2O17RCO">
+      <species metaid="M_MAM02346c" sboTerm="SBO:0000247" id="M_MAM02346c" name="lc3Cer" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C38H69N2O17RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02346c">
+            <rdf:Description rdf:about="#M_MAM02346c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/acglcgalgluside_hs"/>
@@ -64419,10 +64455,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02346g" sboTerm="SBO:0000247" id="MAM02346g" name="lc3Cer" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C38H69N2O17RCO">
+      <species metaid="M_MAM02346g" sboTerm="SBO:0000247" id="M_MAM02346g" name="lc3Cer" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C38H69N2O17RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02346g">
+            <rdf:Description rdf:about="#M_MAM02346g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/acglcgalgluside_hs"/>
@@ -64436,10 +64472,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02347c" sboTerm="SBO:0000247" id="MAM02347c" name="lc4Cer" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C44H79N2O22RCO">
+      <species metaid="M_MAM02347c" sboTerm="SBO:0000247" id="M_MAM02347c" name="lc4Cer" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C44H79N2O22RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02347c">
+            <rdf:Description rdf:about="#M_MAM02347c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/galacglcgalgluside_hs"/>
@@ -64453,10 +64489,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02347g" sboTerm="SBO:0000247" id="MAM02347g" name="lc4Cer" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C44H79N2O22RCO">
+      <species metaid="M_MAM02347g" sboTerm="SBO:0000247" id="M_MAM02347g" name="lc4Cer" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C44H79N2O22RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02347g">
+            <rdf:Description rdf:about="#M_MAM02347g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/galacglcgalgluside_hs"/>
@@ -64470,10 +64506,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02348c" sboTerm="SBO:0000247" id="MAM02348c" name="L-carnitine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H15NO3">
+      <species metaid="M_MAM02348c" sboTerm="SBO:0000247" id="M_MAM02348c" name="L-carnitine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H15NO3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02348c">
+            <rdf:Description rdf:about="#M_MAM02348c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/crn"/>
@@ -64489,10 +64525,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02348m" sboTerm="SBO:0000247" id="MAM02348m" name="L-carnitine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H15NO3">
+      <species metaid="M_MAM02348m" sboTerm="SBO:0000247" id="M_MAM02348m" name="L-carnitine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H15NO3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02348m">
+            <rdf:Description rdf:about="#M_MAM02348m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/crn"/>
@@ -64508,10 +64544,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02348x" sboTerm="SBO:0000247" id="MAM02348x" name="L-carnitine" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H15NO3">
+      <species metaid="M_MAM02348x" sboTerm="SBO:0000247" id="M_MAM02348x" name="L-carnitine" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H15NO3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02348x">
+            <rdf:Description rdf:about="#M_MAM02348x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/crn"/>
@@ -64527,10 +64563,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02348r" sboTerm="SBO:0000247" id="MAM02348r" name="L-carnitine" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H15NO3">
+      <species metaid="M_MAM02348r" sboTerm="SBO:0000247" id="M_MAM02348r" name="L-carnitine" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H15NO3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02348r">
+            <rdf:Description rdf:about="#M_MAM02348r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/crn"/>
@@ -64546,10 +64582,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02348e" sboTerm="SBO:0000247" id="MAM02348e" name="L-carnitine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H15NO3">
+      <species metaid="M_MAM02348e" sboTerm="SBO:0000247" id="M_MAM02348e" name="L-carnitine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H15NO3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02348e">
+            <rdf:Description rdf:about="#M_MAM02348e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/crn"/>
@@ -64565,10 +64601,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02349c" sboTerm="SBO:0000247" id="MAM02349c" name="L-cystathionine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H14N2O4S">
+      <species metaid="M_MAM02349c" sboTerm="SBO:0000247" id="M_MAM02349c" name="L-cystathionine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H14N2O4S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02349c">
+            <rdf:Description rdf:about="#M_MAM02349c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/cyst__L"/>
@@ -64586,10 +64622,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02349m" sboTerm="SBO:0000247" id="MAM02349m" name="L-cystathionine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H14N2O4S">
+      <species metaid="M_MAM02349m" sboTerm="SBO:0000247" id="M_MAM02349m" name="L-cystathionine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H14N2O4S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02349m">
+            <rdf:Description rdf:about="#M_MAM02349m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/cyst__L"/>
@@ -64607,10 +64643,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02350c" sboTerm="SBO:0000247" id="MAM02350c" name="L-cysteate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C3H6NO5S">
+      <species metaid="M_MAM02350c" sboTerm="SBO:0000247" id="M_MAM02350c" name="L-cysteate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C3H6NO5S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02350c">
+            <rdf:Description rdf:about="#M_MAM02350c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/Lcyst"/>
@@ -64626,10 +64662,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02350m" sboTerm="SBO:0000247" id="MAM02350m" name="L-cysteate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C3H6NO5S">
+      <species metaid="M_MAM02350m" sboTerm="SBO:0000247" id="M_MAM02350m" name="L-cysteate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C3H6NO5S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02350m">
+            <rdf:Description rdf:about="#M_MAM02350m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/Lcyst"/>
@@ -64645,10 +64681,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02351c" sboTerm="SBO:0000247" id="MAM02351c" name="L-cysteinyl-tRNA(cys)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C3H7NOSR">
+      <species metaid="M_MAM02351c" sboTerm="SBO:0000247" id="M_MAM02351c" name="L-cysteinyl-tRNA(cys)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C3H7NOSR">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02351c">
+            <rdf:Description rdf:about="#M_MAM02351c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:29152"/>
@@ -64661,10 +64697,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02352l" sboTerm="SBO:0000247" id="MAM02352l" name="LDL remnant" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C33247H54819N7242O13369P860S104R1315">
+      <species metaid="M_MAM02352l" sboTerm="SBO:0000247" id="M_MAM02352l" name="LDL remnant" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C33247H54819N7242O13369P860S104R1315">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02352l">
+            <rdf:Description rdf:about="#M_MAM02352l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M02352"/>
@@ -64674,10 +64710,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02352e" sboTerm="SBO:0000247" id="MAM02352e" name="LDL remnant" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C33247H54819N7242O13369P860S104R1315">
+      <species metaid="M_MAM02352e" sboTerm="SBO:0000247" id="M_MAM02352e" name="LDL remnant" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C33247H54819N7242O13369P860S104R1315">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02352e">
+            <rdf:Description rdf:about="#M_MAM02352e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M02352"/>
@@ -64687,10 +64723,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02353r" sboTerm="SBO:0000247" id="MAM02353r" name="LDL" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C94027H154274N7242O17079P860S104R2830">
+      <species metaid="M_MAM02353r" sboTerm="SBO:0000247" id="M_MAM02353r" name="LDL" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C94027H154274N7242O17079P860S104R2830">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02353r">
+            <rdf:Description rdf:about="#M_MAM02353r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM60389"/>
@@ -64701,10 +64737,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02353e" sboTerm="SBO:0000247" id="MAM02353e" name="LDL" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C94027H154274N7242O17079P860S104R2830">
+      <species metaid="M_MAM02353e" sboTerm="SBO:0000247" id="M_MAM02353e" name="LDL" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C94027H154274N7242O17079P860S104R2830">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02353e">
+            <rdf:Description rdf:about="#M_MAM02353e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM60389"/>
@@ -64715,10 +64751,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02354c" sboTerm="SBO:0000247" id="MAM02354c" name="L-dopa" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H11NO4">
+      <species metaid="M_MAM02354c" sboTerm="SBO:0000247" id="M_MAM02354c" name="L-dopa" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H11NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02354c">
+            <rdf:Description rdf:about="#M_MAM02354c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/34dhphe"/>
@@ -64735,10 +64771,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02354e" sboTerm="SBO:0000247" id="MAM02354e" name="L-dopa" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H11NO4">
+      <species metaid="M_MAM02354e" sboTerm="SBO:0000247" id="M_MAM02354e" name="L-dopa" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H11NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02354e">
+            <rdf:Description rdf:about="#M_MAM02354e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/34dhphe"/>
@@ -64755,10 +64791,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02355c" sboTerm="SBO:0000247" id="MAM02355c" name="L-dopachrome" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C9H6NO4">
+      <species metaid="M_MAM02355c" sboTerm="SBO:0000247" id="M_MAM02355c" name="L-dopachrome" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C9H6NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02355c">
+            <rdf:Description rdf:about="#M_MAM02355c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/L_dpchrm"/>
@@ -64775,10 +64811,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02356c" sboTerm="SBO:0000247" id="MAM02356c" name="L-dopaquinone" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H9NO4">
+      <species metaid="M_MAM02356c" sboTerm="SBO:0000247" id="M_MAM02356c" name="L-dopaquinone" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H9NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02356c">
+            <rdf:Description rdf:about="#M_MAM02356c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dopaqn"/>
@@ -64796,10 +64832,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02357c" sboTerm="SBO:0000247" id="MAM02357c" name="lepidimoide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="X">
+      <species metaid="M_MAM02357c" sboTerm="SBO:0000247" id="M_MAM02357c" name="lepidimoide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="X">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02357c">
+            <rdf:Description rdf:about="#M_MAM02357c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C08241"/>
@@ -64811,10 +64847,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02357e" sboTerm="SBO:0000247" id="MAM02357e" name="lepidimoide" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="X">
+      <species metaid="M_MAM02357e" sboTerm="SBO:0000247" id="M_MAM02357e" name="lepidimoide" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="X">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02357e">
+            <rdf:Description rdf:about="#M_MAM02357e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C08241"/>
@@ -64826,10 +64862,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02358m" sboTerm="SBO:0000247" id="MAM02358m" name="L-erythro-4-hydroxyglutamate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C5H8NO5">
+      <species metaid="M_MAM02358m" sboTerm="SBO:0000247" id="M_MAM02358m" name="L-erythro-4-hydroxyglutamate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C5H8NO5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02358m">
+            <rdf:Description rdf:about="#M_MAM02358m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/e4hglu"/>
@@ -64843,10 +64879,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02359c" sboTerm="SBO:0000247" id="MAM02359c" name="L-erythrulose" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H8O4">
+      <species metaid="M_MAM02359c" sboTerm="SBO:0000247" id="M_MAM02359c" name="L-erythrulose" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H8O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02359c">
+            <rdf:Description rdf:about="#M_MAM02359c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/eryth"/>
@@ -64862,10 +64898,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02360c" sboTerm="SBO:0000247" id="MAM02360c" name="leucine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H13NO2">
+      <species metaid="M_MAM02360c" sboTerm="SBO:0000247" id="M_MAM02360c" name="leucine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H13NO2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02360c">
+            <rdf:Description rdf:about="#M_MAM02360c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/leu__L"/>
@@ -64881,10 +64917,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02360l" sboTerm="SBO:0000247" id="MAM02360l" name="leucine" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H13NO2">
+      <species metaid="M_MAM02360l" sboTerm="SBO:0000247" id="M_MAM02360l" name="leucine" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H13NO2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02360l">
+            <rdf:Description rdf:about="#M_MAM02360l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/leu__L"/>
@@ -64900,10 +64936,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02360m" sboTerm="SBO:0000247" id="MAM02360m" name="leucine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H13NO2">
+      <species metaid="M_MAM02360m" sboTerm="SBO:0000247" id="M_MAM02360m" name="leucine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H13NO2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02360m">
+            <rdf:Description rdf:about="#M_MAM02360m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/leu__L"/>
@@ -64919,10 +64955,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02360e" sboTerm="SBO:0000247" id="MAM02360e" name="leucine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H13NO2">
+      <species metaid="M_MAM02360e" sboTerm="SBO:0000247" id="M_MAM02360e" name="leucine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H13NO2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02360e">
+            <rdf:Description rdf:about="#M_MAM02360e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/leu__L"/>
@@ -64938,10 +64974,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02361c" sboTerm="SBO:0000247" id="MAM02361c" name="leukoaminochrome" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H9NO2">
+      <species metaid="M_MAM02361c" sboTerm="SBO:0000247" id="M_MAM02361c" name="leukoaminochrome" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H9NO2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02361c">
+            <rdf:Description rdf:about="#M_MAM02361c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM9818"/>
@@ -64953,10 +64989,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02362c" sboTerm="SBO:0000247" id="MAM02362c" name="leukotriene A4" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H29O3">
+      <species metaid="M_MAM02362c" sboTerm="SBO:0000247" id="M_MAM02362c" name="leukotriene A4" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H29O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02362c">
+            <rdf:Description rdf:about="#M_MAM02362c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/leuktrA4"/>
@@ -64973,10 +65009,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02362n" sboTerm="SBO:0000247" id="MAM02362n" name="leukotriene A4" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H29O3">
+      <species metaid="M_MAM02362n" sboTerm="SBO:0000247" id="M_MAM02362n" name="leukotriene A4" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H29O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02362n">
+            <rdf:Description rdf:about="#M_MAM02362n">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/leuktrA4"/>
@@ -64993,10 +65029,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02362r" sboTerm="SBO:0000247" id="MAM02362r" name="leukotriene A4" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H29O3">
+      <species metaid="M_MAM02362r" sboTerm="SBO:0000247" id="M_MAM02362r" name="leukotriene A4" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H29O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02362r">
+            <rdf:Description rdf:about="#M_MAM02362r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/leuktrA4"/>
@@ -65013,10 +65049,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02362e" sboTerm="SBO:0000247" id="MAM02362e" name="leukotriene A4" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H29O3">
+      <species metaid="M_MAM02362e" sboTerm="SBO:0000247" id="M_MAM02362e" name="leukotriene A4" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H29O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02362e">
+            <rdf:Description rdf:about="#M_MAM02362e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/leuktrA4"/>
@@ -65033,10 +65069,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02363c" sboTerm="SBO:0000247" id="MAM02363c" name="leukotriene A5" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H27O3">
+      <species metaid="M_MAM02363c" sboTerm="SBO:0000247" id="M_MAM02363c" name="leukotriene A5" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H27O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02363c">
+            <rdf:Description rdf:about="#M_MAM02363c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM163421"/>
@@ -65047,10 +65083,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02364c" sboTerm="SBO:0000247" id="MAM02364c" name="leukotriene B4" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O4">
+      <species metaid="M_MAM02364c" sboTerm="SBO:0000247" id="M_MAM02364c" name="leukotriene B4" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02364c">
+            <rdf:Description rdf:about="#M_MAM02364c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/leuktrB4"/>
@@ -65068,10 +65104,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02364m" sboTerm="SBO:0000247" id="MAM02364m" name="leukotriene B4" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O4">
+      <species metaid="M_MAM02364m" sboTerm="SBO:0000247" id="M_MAM02364m" name="leukotriene B4" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02364m">
+            <rdf:Description rdf:about="#M_MAM02364m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/leuktrB4"/>
@@ -65089,10 +65125,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02364x" sboTerm="SBO:0000247" id="MAM02364x" name="leukotriene B4" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O4">
+      <species metaid="M_MAM02364x" sboTerm="SBO:0000247" id="M_MAM02364x" name="leukotriene B4" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02364x">
+            <rdf:Description rdf:about="#M_MAM02364x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/leuktrB4"/>
@@ -65110,10 +65146,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02364r" sboTerm="SBO:0000247" id="MAM02364r" name="leukotriene B4" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O4">
+      <species metaid="M_MAM02364r" sboTerm="SBO:0000247" id="M_MAM02364r" name="leukotriene B4" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02364r">
+            <rdf:Description rdf:about="#M_MAM02364r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/leuktrB4"/>
@@ -65131,10 +65167,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02364e" sboTerm="SBO:0000247" id="MAM02364e" name="leukotriene B4" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O4">
+      <species metaid="M_MAM02364e" sboTerm="SBO:0000247" id="M_MAM02364e" name="leukotriene B4" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02364e">
+            <rdf:Description rdf:about="#M_MAM02364e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/leuktrB4"/>
@@ -65152,10 +65188,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02365c" sboTerm="SBO:0000247" id="MAM02365c" name="leukotriene B5" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H29O4">
+      <species metaid="M_MAM02365c" sboTerm="SBO:0000247" id="M_MAM02365c" name="leukotriene B5" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H29O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02365c">
+            <rdf:Description rdf:about="#M_MAM02365c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/LMFA03070018"/>
@@ -65168,10 +65204,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02365r" sboTerm="SBO:0000247" id="MAM02365r" name="leukotriene B5" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H29O4">
+      <species metaid="M_MAM02365r" sboTerm="SBO:0000247" id="M_MAM02365r" name="leukotriene B5" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H29O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02365r">
+            <rdf:Description rdf:about="#M_MAM02365r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/LMFA03070018"/>
@@ -65184,10 +65220,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM02366c" sboTerm="SBO:0000247" id="MAM02366c" name="leukotriene C4" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C30H45N3O9S">
+      <species metaid="M_MAM02366c" sboTerm="SBO:0000247" id="M_MAM02366c" name="leukotriene C4" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C30H45N3O9S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02366c">
+            <rdf:Description rdf:about="#M_MAM02366c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/leuktrC4"/>
@@ -65204,10 +65240,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02366r" sboTerm="SBO:0000247" id="MAM02366r" name="leukotriene C4" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C30H45N3O9S">
+      <species metaid="M_MAM02366r" sboTerm="SBO:0000247" id="M_MAM02366r" name="leukotriene C4" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C30H45N3O9S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02366r">
+            <rdf:Description rdf:about="#M_MAM02366r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/leuktrC4"/>
@@ -65224,10 +65260,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02366e" sboTerm="SBO:0000247" id="MAM02366e" name="leukotriene C4" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C30H45N3O9S">
+      <species metaid="M_MAM02366e" sboTerm="SBO:0000247" id="M_MAM02366e" name="leukotriene C4" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C30H45N3O9S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02366e">
+            <rdf:Description rdf:about="#M_MAM02366e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/leuktrC4"/>
@@ -65244,10 +65280,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02367c" sboTerm="SBO:0000247" id="MAM02367c" name="leukotriene C5" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C30H43N3O9S">
+      <species metaid="M_MAM02367c" sboTerm="SBO:0000247" id="M_MAM02367c" name="leukotriene C5" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C30H43N3O9S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02367c">
+            <rdf:Description rdf:about="#M_MAM02367c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM59983"/>
@@ -65259,10 +65295,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02368c" sboTerm="SBO:0000247" id="MAM02368c" name="leukotriene D5" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C25H37N2O6S">
+      <species metaid="M_MAM02368c" sboTerm="SBO:0000247" id="M_MAM02368c" name="leukotriene D5" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C25H37N2O6S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02368c">
+            <rdf:Description rdf:about="#M_MAM02368c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM59985"/>
@@ -65274,10 +65310,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02369c" sboTerm="SBO:0000247" id="MAM02369c" name="leukotriene E4" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C23H36NO5S">
+      <species metaid="M_MAM02369c" sboTerm="SBO:0000247" id="M_MAM02369c" name="leukotriene E4" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C23H36NO5S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02369c">
+            <rdf:Description rdf:about="#M_MAM02369c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/leuktrE4"/>
@@ -65295,10 +65331,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02369n" sboTerm="SBO:0000247" id="MAM02369n" name="leukotriene E4" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C23H36NO5S">
+      <species metaid="M_MAM02369n" sboTerm="SBO:0000247" id="M_MAM02369n" name="leukotriene E4" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C23H36NO5S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02369n">
+            <rdf:Description rdf:about="#M_MAM02369n">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/leuktrE4"/>
@@ -65316,10 +65352,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02369x" sboTerm="SBO:0000247" id="MAM02369x" name="leukotriene E4" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C23H36NO5S">
+      <species metaid="M_MAM02369x" sboTerm="SBO:0000247" id="M_MAM02369x" name="leukotriene E4" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C23H36NO5S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02369x">
+            <rdf:Description rdf:about="#M_MAM02369x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/leuktrE4"/>
@@ -65337,10 +65373,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02369e" sboTerm="SBO:0000247" id="MAM02369e" name="leukotriene E4" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C23H36NO5S">
+      <species metaid="M_MAM02369e" sboTerm="SBO:0000247" id="M_MAM02369e" name="leukotriene E4" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C23H36NO5S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02369e">
+            <rdf:Description rdf:about="#M_MAM02369e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/leuktrE4"/>
@@ -65358,10 +65394,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02370c" sboTerm="SBO:0000247" id="MAM02370c" name="leukotriene F4" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C28H42N2O8S">
+      <species metaid="M_MAM02370c" sboTerm="SBO:0000247" id="M_MAM02370c" name="leukotriene F4" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C28H42N2O8S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02370c">
+            <rdf:Description rdf:about="#M_MAM02370c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/leuktrF4"/>
@@ -65376,10 +65412,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02370e" sboTerm="SBO:0000247" id="MAM02370e" name="leukotriene F4" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C28H42N2O8S">
+      <species metaid="M_MAM02370e" sboTerm="SBO:0000247" id="M_MAM02370e" name="leukotriene F4" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C28H42N2O8S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02370e">
+            <rdf:Description rdf:about="#M_MAM02370e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/leuktrF4"/>
@@ -65394,10 +65430,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02371c" sboTerm="SBO:0000247" id="MAM02371c" name="L-formylkynurenine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C11H12N2O4">
+      <species metaid="M_MAM02371c" sboTerm="SBO:0000247" id="M_MAM02371c" name="L-formylkynurenine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C11H12N2O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02371c">
+            <rdf:Description rdf:about="#M_MAM02371c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/Lfmkynr"/>
@@ -65412,10 +65448,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02373c" sboTerm="SBO:0000247" id="MAM02373c" name="L-fuculose" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H12O5">
+      <species metaid="M_MAM02373c" sboTerm="SBO:0000247" id="M_MAM02373c" name="L-fuculose" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H12O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02373c">
+            <rdf:Description rdf:about="#M_MAM02373c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:17617"/>
@@ -65429,10 +65465,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02374c" sboTerm="SBO:0000247" id="MAM02374c" name="L-glutamate 5-semialdehyde" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H9NO3">
+      <species metaid="M_MAM02374c" sboTerm="SBO:0000247" id="M_MAM02374c" name="L-glutamate 5-semialdehyde" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H9NO3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02374c">
+            <rdf:Description rdf:about="#M_MAM02374c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/glu5sa"/>
@@ -65447,10 +65483,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02374m" sboTerm="SBO:0000247" id="MAM02374m" name="L-glutamate 5-semialdehyde" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H9NO3">
+      <species metaid="M_MAM02374m" sboTerm="SBO:0000247" id="M_MAM02374m" name="L-glutamate 5-semialdehyde" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H9NO3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02374m">
+            <rdf:Description rdf:about="#M_MAM02374m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/glu5sa"/>
@@ -65465,10 +65501,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02375c" sboTerm="SBO:0000247" id="MAM02375c" name="L-glutaminyl-peptide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H14N4O5R2">
+      <species metaid="M_MAM02375c" sboTerm="SBO:0000247" id="M_MAM02375c" name="L-glutaminyl-peptide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H14N4O5R2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02375c">
+            <rdf:Description rdf:about="#M_MAM02375c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C02986"/>
@@ -65480,10 +65516,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02376c" sboTerm="SBO:0000247" id="MAM02376c" name="L-glutaminyl-tRNA(gln)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C5H10N2O2R">
+      <species metaid="M_MAM02376c" sboTerm="SBO:0000247" id="M_MAM02376c" name="L-glutaminyl-tRNA(gln)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C5H10N2O2R">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02376c">
+            <rdf:Description rdf:about="#M_MAM02376c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:29166"/>
@@ -65496,10 +65532,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02377c" sboTerm="SBO:0000247" id="MAM02377c" name="L-glutamyl-tRNA(glu)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H8NO3R">
+      <species metaid="M_MAM02377c" sboTerm="SBO:0000247" id="M_MAM02377c" name="L-glutamyl-tRNA(glu)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H8NO3R">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02377c">
+            <rdf:Description rdf:about="#M_MAM02377c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:29157"/>
@@ -65512,10 +65548,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02378c" sboTerm="SBO:0000247" id="MAM02378c" name="L-gulonate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H11O7">
+      <species metaid="M_MAM02378c" sboTerm="SBO:0000247" id="M_MAM02378c" name="L-gulonate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H11O7">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02378c">
+            <rdf:Description rdf:about="#M_MAM02378c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/guln__L"/>
@@ -65531,10 +65567,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02378r" sboTerm="SBO:0000247" id="MAM02378r" name="L-gulonate" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H11O7">
+      <species metaid="M_MAM02378r" sboTerm="SBO:0000247" id="M_MAM02378r" name="L-gulonate" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H11O7">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02378r">
+            <rdf:Description rdf:about="#M_MAM02378r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/guln__L"/>
@@ -65550,10 +65586,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02379c" sboTerm="SBO:0000247" id="MAM02379c" name="L-gulono-1,4-lactone" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H10O6">
+      <species metaid="M_MAM02379c" sboTerm="SBO:0000247" id="M_MAM02379c" name="L-gulono-1,4-lactone" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H10O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02379c">
+            <rdf:Description rdf:about="#M_MAM02379c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/gullac"/>
@@ -65569,10 +65605,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02379r" sboTerm="SBO:0000247" id="MAM02379r" name="L-gulono-1,4-lactone" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H10O6">
+      <species metaid="M_MAM02379r" sboTerm="SBO:0000247" id="M_MAM02379r" name="L-gulono-1,4-lactone" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H10O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02379r">
+            <rdf:Description rdf:about="#M_MAM02379r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/gullac"/>
@@ -65588,10 +65624,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02380c" sboTerm="SBO:0000247" id="MAM02380c" name="L-histidyl-tRNA(his)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C6H9N3OR">
+      <species metaid="M_MAM02380c" sboTerm="SBO:0000247" id="M_MAM02380c" name="L-histidyl-tRNA(his)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C6H9N3OR">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02380c">
+            <rdf:Description rdf:about="#M_MAM02380c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:29155"/>
@@ -65604,10 +65640,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02381c" sboTerm="SBO:0000247" id="MAM02381c" name="L-hydroxylysine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H14N2O3">
+      <species metaid="M_MAM02381c" sboTerm="SBO:0000247" id="M_MAM02381c" name="L-hydroxylysine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H14N2O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02381c">
+            <rdf:Description rdf:about="#M_MAM02381c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pcollg5hlys"/>
@@ -65624,10 +65660,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02382c" sboTerm="SBO:0000247" id="MAM02382c" name="Li+" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="Li">
+      <species metaid="M_MAM02382c" sboTerm="SBO:0000247" id="M_MAM02382c" name="Li+" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="Li">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02382c">
+            <rdf:Description rdf:about="#M_MAM02382c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:49713"/>
@@ -65639,10 +65675,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02382e" sboTerm="SBO:0000247" id="MAM02382e" name="Li+" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="Li">
+      <species metaid="M_MAM02382e" sboTerm="SBO:0000247" id="M_MAM02382e" name="Li+" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="Li">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02382e">
+            <rdf:Description rdf:about="#M_MAM02382e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:49713"/>
@@ -65654,10 +65690,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02383c" sboTerm="SBO:0000247" id="MAM02383c" name="L-iditol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H14O6">
+      <species metaid="M_MAM02383c" sboTerm="SBO:0000247" id="M_MAM02383c" name="L-iditol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H14O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02383c">
+            <rdf:Description rdf:about="#M_MAM02383c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:18202"/>
@@ -65673,10 +65709,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02384c" sboTerm="SBO:0000247" id="MAM02384c" name="L-iduronic acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H9O7">
+      <species metaid="M_MAM02384c" sboTerm="SBO:0000247" id="M_MAM02384c" name="L-iduronic acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H9O7">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02384c">
+            <rdf:Description rdf:about="#M_MAM02384c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/idour"/>
@@ -65691,10 +65727,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02384l" sboTerm="SBO:0000247" id="MAM02384l" name="L-iduronic acid" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H9O7">
+      <species metaid="M_MAM02384l" sboTerm="SBO:0000247" id="M_MAM02384l" name="L-iduronic acid" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H9O7">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02384l">
+            <rdf:Description rdf:about="#M_MAM02384l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/idour"/>
@@ -65709,10 +65745,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02384e" sboTerm="SBO:0000247" id="MAM02384e" name="L-iduronic acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H9O7">
+      <species metaid="M_MAM02384e" sboTerm="SBO:0000247" id="M_MAM02384e" name="L-iduronic acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H9O7">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02384e">
+            <rdf:Description rdf:about="#M_MAM02384e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/idour"/>
@@ -65727,10 +65763,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02385c" sboTerm="SBO:0000247" id="MAM02385c" name="lignocerate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H47O2">
+      <species metaid="M_MAM02385c" sboTerm="SBO:0000247" id="M_MAM02385c" name="lignocerate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H47O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02385c">
+            <rdf:Description rdf:about="#M_MAM02385c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/lgnc"/>
@@ -65748,10 +65784,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02385l" sboTerm="SBO:0000247" id="MAM02385l" name="lignocerate" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H47O2">
+      <species metaid="M_MAM02385l" sboTerm="SBO:0000247" id="M_MAM02385l" name="lignocerate" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H47O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02385l">
+            <rdf:Description rdf:about="#M_MAM02385l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/lgnc"/>
@@ -65769,10 +65805,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02385r" sboTerm="SBO:0000247" id="MAM02385r" name="lignocerate" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H47O2">
+      <species metaid="M_MAM02385r" sboTerm="SBO:0000247" id="M_MAM02385r" name="lignocerate" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H47O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02385r">
+            <rdf:Description rdf:about="#M_MAM02385r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/lgnc"/>
@@ -65790,10 +65826,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02385e" sboTerm="SBO:0000247" id="MAM02385e" name="lignocerate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H47O2">
+      <species metaid="M_MAM02385e" sboTerm="SBO:0000247" id="M_MAM02385e" name="lignocerate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H47O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02385e">
+            <rdf:Description rdf:about="#M_MAM02385e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/lgnc"/>
@@ -65811,10 +65847,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02386c" sboTerm="SBO:0000247" id="MAM02386c" name="limonene" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H16">
+      <species metaid="M_MAM02386c" sboTerm="SBO:0000247" id="M_MAM02386c" name="limonene" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H16">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02386c">
+            <rdf:Description rdf:about="#M_MAM02386c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/limnen"/>
@@ -65830,10 +65866,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02386e" sboTerm="SBO:0000247" id="MAM02386e" name="limonene" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H16">
+      <species metaid="M_MAM02386e" sboTerm="SBO:0000247" id="M_MAM02386e" name="limonene" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H16">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02386e">
+            <rdf:Description rdf:about="#M_MAM02386e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/limnen"/>
@@ -65849,10 +65885,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02387c" sboTerm="SBO:0000247" id="MAM02387c" name="linoleate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H31O2">
+      <species metaid="M_MAM02387c" sboTerm="SBO:0000247" id="M_MAM02387c" name="linoleate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H31O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02387c">
+            <rdf:Description rdf:about="#M_MAM02387c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/lnlc"/>
@@ -65869,10 +65905,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02387l" sboTerm="SBO:0000247" id="MAM02387l" name="linoleate" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H31O2">
+      <species metaid="M_MAM02387l" sboTerm="SBO:0000247" id="M_MAM02387l" name="linoleate" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H31O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02387l">
+            <rdf:Description rdf:about="#M_MAM02387l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/lnlc"/>
@@ -65889,10 +65925,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02387r" sboTerm="SBO:0000247" id="MAM02387r" name="linoleate" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H31O2">
+      <species metaid="M_MAM02387r" sboTerm="SBO:0000247" id="M_MAM02387r" name="linoleate" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H31O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02387r">
+            <rdf:Description rdf:about="#M_MAM02387r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/lnlc"/>
@@ -65909,10 +65945,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02387e" sboTerm="SBO:0000247" id="MAM02387e" name="linoleate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H31O2">
+      <species metaid="M_MAM02387e" sboTerm="SBO:0000247" id="M_MAM02387e" name="linoleate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H31O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02387e">
+            <rdf:Description rdf:about="#M_MAM02387e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/lnlc"/>
@@ -65929,10 +65965,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02388c" sboTerm="SBO:0000247" id="MAM02388c" name="linoleic-carnitine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H45NO4">
+      <species metaid="M_MAM02388c" sboTerm="SBO:0000247" id="M_MAM02388c" name="linoleic-carnitine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H45NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02388c">
+            <rdf:Description rdf:about="#M_MAM02388c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/lnlccrn"/>
@@ -65946,10 +65982,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02388m" sboTerm="SBO:0000247" id="MAM02388m" name="linoleic-carnitine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H45NO4">
+      <species metaid="M_MAM02388m" sboTerm="SBO:0000247" id="M_MAM02388m" name="linoleic-carnitine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H45NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02388m">
+            <rdf:Description rdf:about="#M_MAM02388m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/lnlccrn"/>
@@ -65963,10 +65999,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02388r" sboTerm="SBO:0000247" id="MAM02388r" name="linoleic-carnitine" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H45NO4">
+      <species metaid="M_MAM02388r" sboTerm="SBO:0000247" id="M_MAM02388r" name="linoleic-carnitine" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H45NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02388r">
+            <rdf:Description rdf:about="#M_MAM02388r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/lnlccrn"/>
@@ -65980,10 +66016,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02389c" sboTerm="SBO:0000247" id="MAM02389c" name="linolenate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H29O2">
+      <species metaid="M_MAM02389c" sboTerm="SBO:0000247" id="M_MAM02389c" name="linolenate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H29O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02389c">
+            <rdf:Description rdf:about="#M_MAM02389c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/lnlnca"/>
@@ -66000,10 +66036,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02389l" sboTerm="SBO:0000247" id="MAM02389l" name="linolenate" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H29O2">
+      <species metaid="M_MAM02389l" sboTerm="SBO:0000247" id="M_MAM02389l" name="linolenate" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H29O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02389l">
+            <rdf:Description rdf:about="#M_MAM02389l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/lnlnca"/>
@@ -66020,10 +66056,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02389r" sboTerm="SBO:0000247" id="MAM02389r" name="linolenate" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H29O2">
+      <species metaid="M_MAM02389r" sboTerm="SBO:0000247" id="M_MAM02389r" name="linolenate" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H29O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02389r">
+            <rdf:Description rdf:about="#M_MAM02389r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/lnlnca"/>
@@ -66040,10 +66076,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02389e" sboTerm="SBO:0000247" id="MAM02389e" name="linolenate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H29O2">
+      <species metaid="M_MAM02389e" sboTerm="SBO:0000247" id="M_MAM02389e" name="linolenate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H29O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02389e">
+            <rdf:Description rdf:about="#M_MAM02389e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/lnlnca"/>
@@ -66060,10 +66096,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02390c" sboTerm="SBO:0000247" id="MAM02390c" name="linolenoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C39H60N7O17P3S">
+      <species metaid="M_MAM02390c" sboTerm="SBO:0000247" id="M_MAM02390c" name="linolenoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C39H60N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02390c">
+            <rdf:Description rdf:about="#M_MAM02390c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/lnlncacoa"/>
@@ -66080,10 +66116,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02390m" sboTerm="SBO:0000247" id="MAM02390m" name="linolenoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C39H60N7O17P3S">
+      <species metaid="M_MAM02390m" sboTerm="SBO:0000247" id="M_MAM02390m" name="linolenoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C39H60N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02390m">
+            <rdf:Description rdf:about="#M_MAM02390m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/lnlncacoa"/>
@@ -66100,10 +66136,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02390r" sboTerm="SBO:0000247" id="MAM02390r" name="linolenoyl-CoA" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C39H60N7O17P3S">
+      <species metaid="M_MAM02390r" sboTerm="SBO:0000247" id="M_MAM02390r" name="linolenoyl-CoA" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C39H60N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02390r">
+            <rdf:Description rdf:about="#M_MAM02390r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/lnlncacoa"/>
@@ -66120,10 +66156,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02391c" sboTerm="SBO:0000247" id="MAM02391c" name="linoleoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C39H62N7O17P3S">
+      <species metaid="M_MAM02391c" sboTerm="SBO:0000247" id="M_MAM02391c" name="linoleoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C39H62N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02391c">
+            <rdf:Description rdf:about="#M_MAM02391c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/lnlccoa"/>
@@ -66140,10 +66176,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02391m" sboTerm="SBO:0000247" id="MAM02391m" name="linoleoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C39H62N7O17P3S">
+      <species metaid="M_MAM02391m" sboTerm="SBO:0000247" id="M_MAM02391m" name="linoleoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C39H62N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02391m">
+            <rdf:Description rdf:about="#M_MAM02391m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/lnlccoa"/>
@@ -66160,10 +66196,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02391x" sboTerm="SBO:0000247" id="MAM02391x" name="linoleoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C39H62N7O17P3S">
+      <species metaid="M_MAM02391x" sboTerm="SBO:0000247" id="M_MAM02391x" name="linoleoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C39H62N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02391x">
+            <rdf:Description rdf:about="#M_MAM02391x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/lnlccoa"/>
@@ -66180,10 +66216,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02391r" sboTerm="SBO:0000247" id="MAM02391r" name="linoleoyl-CoA" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C39H62N7O17P3S">
+      <species metaid="M_MAM02391r" sboTerm="SBO:0000247" id="M_MAM02391r" name="linoleoyl-CoA" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C39H62N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02391r">
+            <rdf:Description rdf:about="#M_MAM02391r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/lnlccoa"/>
@@ -66200,10 +66236,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02392c" sboTerm="SBO:0000247" id="MAM02392c" name="lipid droplet" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="X">
+      <species metaid="M_MAM02392c" sboTerm="SBO:0000247" id="M_MAM02392c" name="lipid droplet" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="X">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02392c">
+            <rdf:Description rdf:about="#M_MAM02392c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M02392"/>
@@ -66213,10 +66249,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02393m" sboTerm="SBO:0000247" id="MAM02393m" name="lipoamide" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H15NOS2">
+      <species metaid="M_MAM02393m" sboTerm="SBO:0000247" id="M_MAM02393m" name="lipoamide" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H15NOS2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02393m">
+            <rdf:Description rdf:about="#M_MAM02393m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/lpam"/>
@@ -66232,10 +66268,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02394c" sboTerm="SBO:0000247" id="MAM02394c" name="lipoic acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C8H13O2S2">
+      <species metaid="M_MAM02394c" sboTerm="SBO:0000247" id="M_MAM02394c" name="lipoic acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C8H13O2S2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02394c">
+            <rdf:Description rdf:about="#M_MAM02394c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/lipoate"/>
@@ -66252,10 +66288,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02394e" sboTerm="SBO:0000247" id="MAM02394e" name="lipoic acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C8H13O2S2">
+      <species metaid="M_MAM02394e" sboTerm="SBO:0000247" id="M_MAM02394e" name="lipoic acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C8H13O2S2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02394e">
+            <rdf:Description rdf:about="#M_MAM02394e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/lipoate"/>
@@ -66272,10 +66308,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02395c" sboTerm="SBO:0000247" id="MAM02395c" name="lipoxin A4" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O5">
+      <species metaid="M_MAM02395c" sboTerm="SBO:0000247" id="M_MAM02395c" name="lipoxin A4" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02395c">
+            <rdf:Description rdf:about="#M_MAM02395c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:6498"/>
@@ -66291,10 +66327,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02395n" sboTerm="SBO:0000247" id="MAM02395n" name="lipoxin A4" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O5">
+      <species metaid="M_MAM02395n" sboTerm="SBO:0000247" id="M_MAM02395n" name="lipoxin A4" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02395n">
+            <rdf:Description rdf:about="#M_MAM02395n">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:6498"/>
@@ -66310,10 +66346,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02395x" sboTerm="SBO:0000247" id="MAM02395x" name="lipoxin A4" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O5">
+      <species metaid="M_MAM02395x" sboTerm="SBO:0000247" id="M_MAM02395x" name="lipoxin A4" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02395x">
+            <rdf:Description rdf:about="#M_MAM02395x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:6498"/>
@@ -66329,10 +66365,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02395r" sboTerm="SBO:0000247" id="MAM02395r" name="lipoxin A4" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O5">
+      <species metaid="M_MAM02395r" sboTerm="SBO:0000247" id="M_MAM02395r" name="lipoxin A4" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02395r">
+            <rdf:Description rdf:about="#M_MAM02395r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:6498"/>
@@ -66348,10 +66384,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02396c" sboTerm="SBO:0000247" id="MAM02396c" name="lipoxin B4" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O5">
+      <species metaid="M_MAM02396c" sboTerm="SBO:0000247" id="M_MAM02396c" name="lipoxin B4" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02396c">
+            <rdf:Description rdf:about="#M_MAM02396c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:6499"/>
@@ -66367,10 +66403,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02396n" sboTerm="SBO:0000247" id="MAM02396n" name="lipoxin B4" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O5">
+      <species metaid="M_MAM02396n" sboTerm="SBO:0000247" id="M_MAM02396n" name="lipoxin B4" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02396n">
+            <rdf:Description rdf:about="#M_MAM02396n">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:6499"/>
@@ -66386,10 +66422,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02396x" sboTerm="SBO:0000247" id="MAM02396x" name="lipoxin B4" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O5">
+      <species metaid="M_MAM02396x" sboTerm="SBO:0000247" id="M_MAM02396x" name="lipoxin B4" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02396x">
+            <rdf:Description rdf:about="#M_MAM02396x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:6499"/>
@@ -66405,10 +66441,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02396r" sboTerm="SBO:0000247" id="MAM02396r" name="lipoxin B4" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O5">
+      <species metaid="M_MAM02396r" sboTerm="SBO:0000247" id="M_MAM02396r" name="lipoxin B4" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02396r">
+            <rdf:Description rdf:about="#M_MAM02396r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:6499"/>
@@ -66424,10 +66460,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02397c" sboTerm="SBO:0000247" id="MAM02397c" name="lipoyl-[ACP]" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C19H33N2O8PRS3">
+      <species metaid="M_MAM02397c" sboTerm="SBO:0000247" id="M_MAM02397c" name="lipoyl-[ACP]" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C19H33N2O8PRS3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02397c">
+            <rdf:Description rdf:about="#M_MAM02397c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C16239"/>
@@ -66439,10 +66475,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02398c" sboTerm="SBO:0000247" id="MAM02398c" name="lipoyl-AMP" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H25N5O8PS2">
+      <species metaid="M_MAM02398c" sboTerm="SBO:0000247" id="M_MAM02398c" name="lipoyl-AMP" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H25N5O8PS2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02398c">
+            <rdf:Description rdf:about="#M_MAM02398c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C16238"/>
@@ -66455,10 +66491,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02399c" sboTerm="SBO:0000247" id="MAM02399c" name="lipoyllysine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C14H26N2O3S2">
+      <species metaid="M_MAM02399c" sboTerm="SBO:0000247" id="M_MAM02399c" name="lipoyllysine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C14H26N2O3S2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02399c">
+            <rdf:Description rdf:about="#M_MAM02399c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM60228"/>
@@ -66470,10 +66506,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02400m" sboTerm="SBO:0000247" id="MAM02400m" name="lipoylprotein" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="S2X">
+      <species metaid="M_MAM02400m" sboTerm="SBO:0000247" id="M_MAM02400m" name="lipoylprotein" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="S2X">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02400m">
+            <rdf:Description rdf:about="#M_MAM02400m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/lpro"/>
@@ -66487,10 +66523,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02401c" sboTerm="SBO:0000247" id="MAM02401c" name="L-isoleucyl-tRNA(ile)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C6H13NOR">
+      <species metaid="M_MAM02401c" sboTerm="SBO:0000247" id="M_MAM02401c" name="L-isoleucyl-tRNA(ile)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C6H13NOR">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02401c">
+            <rdf:Description rdf:about="#M_MAM02401c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:29160"/>
@@ -66503,10 +66539,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02402c" sboTerm="SBO:0000247" id="MAM02402c" name="lithocholate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H39O3">
+      <species metaid="M_MAM02402c" sboTerm="SBO:0000247" id="M_MAM02402c" name="lithocholate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H39O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02402c">
+            <rdf:Description rdf:about="#M_MAM02402c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:16325"/>
@@ -66522,10 +66558,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02402x" sboTerm="SBO:0000247" id="MAM02402x" name="lithocholate" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H39O3">
+      <species metaid="M_MAM02402x" sboTerm="SBO:0000247" id="M_MAM02402x" name="lithocholate" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H39O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02402x">
+            <rdf:Description rdf:about="#M_MAM02402x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:16325"/>
@@ -66541,10 +66577,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02402r" sboTerm="SBO:0000247" id="MAM02402r" name="lithocholate" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H39O3">
+      <species metaid="M_MAM02402r" sboTerm="SBO:0000247" id="M_MAM02402r" name="lithocholate" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H39O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02402r">
+            <rdf:Description rdf:about="#M_MAM02402r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:16325"/>
@@ -66560,10 +66596,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02402e" sboTerm="SBO:0000247" id="MAM02402e" name="lithocholate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H39O3">
+      <species metaid="M_MAM02402e" sboTerm="SBO:0000247" id="M_MAM02402e" name="lithocholate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H39O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02402e">
+            <rdf:Description rdf:about="#M_MAM02402e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:16325"/>
@@ -66579,10 +66615,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02403c" sboTerm="SBO:0000247" id="MAM02403c" name="L-lactate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C3H5O3">
+      <species metaid="M_MAM02403c" sboTerm="SBO:0000247" id="M_MAM02403c" name="L-lactate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C3H5O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02403c">
+            <rdf:Description rdf:about="#M_MAM02403c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/lac__L"/>
@@ -66599,10 +66635,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02403m" sboTerm="SBO:0000247" id="MAM02403m" name="L-lactate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C3H5O3">
+      <species metaid="M_MAM02403m" sboTerm="SBO:0000247" id="M_MAM02403m" name="L-lactate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C3H5O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02403m">
+            <rdf:Description rdf:about="#M_MAM02403m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/lac__L"/>
@@ -66619,10 +66655,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02403x" sboTerm="SBO:0000247" id="MAM02403x" name="L-lactate" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C3H5O3">
+      <species metaid="M_MAM02403x" sboTerm="SBO:0000247" id="M_MAM02403x" name="L-lactate" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C3H5O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02403x">
+            <rdf:Description rdf:about="#M_MAM02403x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/lac__L"/>
@@ -66639,10 +66675,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02403e" sboTerm="SBO:0000247" id="MAM02403e" name="L-lactate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C3H5O3">
+      <species metaid="M_MAM02403e" sboTerm="SBO:0000247" id="M_MAM02403e" name="L-lactate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C3H5O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02403e">
+            <rdf:Description rdf:about="#M_MAM02403e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/lac__L"/>
@@ -66659,10 +66695,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02404c" sboTerm="SBO:0000247" id="MAM02404c" name="L-leucyl-tRNA(leu)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C6H13NOR">
+      <species metaid="M_MAM02404c" sboTerm="SBO:0000247" id="M_MAM02404c" name="L-leucyl-tRNA(leu)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C6H13NOR">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02404c">
+            <rdf:Description rdf:about="#M_MAM02404c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:16624"/>
@@ -66675,10 +66711,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02405c" sboTerm="SBO:0000247" id="MAM02405c" name="L-lysyl-tRNA(lys)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="C6H15N2OR">
+      <species metaid="M_MAM02405c" sboTerm="SBO:0000247" id="M_MAM02405c" name="L-lysyl-tRNA(lys)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="C6H15N2OR">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02405c">
+            <rdf:Description rdf:about="#M_MAM02405c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:16047"/>
@@ -66691,10 +66727,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02406c" sboTerm="SBO:0000247" id="MAM02406c" name="L-lyxonate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C5H9O6">
+      <species metaid="M_MAM02406c" sboTerm="SBO:0000247" id="M_MAM02406c" name="L-lyxonate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C5H9O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02406c">
+            <rdf:Description rdf:about="#M_MAM02406c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/lyxnt"/>
@@ -66709,10 +66745,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02407c" sboTerm="SBO:0000247" id="MAM02407c" name="L-metanephrine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C10H16NO3">
+      <species metaid="M_MAM02407c" sboTerm="SBO:0000247" id="M_MAM02407c" name="L-metanephrine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C10H16NO3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02407c">
+            <rdf:Description rdf:about="#M_MAM02407c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/mepi"/>
@@ -66729,10 +66765,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02407e" sboTerm="SBO:0000247" id="MAM02407e" name="L-metanephrine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C10H16NO3">
+      <species metaid="M_MAM02407e" sboTerm="SBO:0000247" id="M_MAM02407e" name="L-metanephrine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C10H16NO3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02407e">
+            <rdf:Description rdf:about="#M_MAM02407e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/mepi"/>
@@ -66749,10 +66785,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02408c" sboTerm="SBO:0000247" id="MAM02408c" name="L-methionyl-tRNA(met)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C5H11NOSR">
+      <species metaid="M_MAM02408c" sboTerm="SBO:0000247" id="M_MAM02408c" name="L-methionyl-tRNA(met)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C5H11NOSR">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02408c">
+            <rdf:Description rdf:about="#M_MAM02408c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:16635"/>
@@ -66765,10 +66801,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02409c" sboTerm="SBO:0000247" id="MAM02409c" name="L-octanoylcarnitine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C15H29NO4">
+      <species metaid="M_MAM02409c" sboTerm="SBO:0000247" id="M_MAM02409c" name="L-octanoylcarnitine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C15H29NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02409c">
+            <rdf:Description rdf:about="#M_MAM02409c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:18102"/>
@@ -66786,10 +66822,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02409m" sboTerm="SBO:0000247" id="MAM02409m" name="L-octanoylcarnitine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C15H29NO4">
+      <species metaid="M_MAM02409m" sboTerm="SBO:0000247" id="M_MAM02409m" name="L-octanoylcarnitine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C15H29NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02409m">
+            <rdf:Description rdf:about="#M_MAM02409m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:18102"/>
@@ -66807,10 +66843,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02409x" sboTerm="SBO:0000247" id="MAM02409x" name="L-octanoylcarnitine" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C15H29NO4">
+      <species metaid="M_MAM02409x" sboTerm="SBO:0000247" id="M_MAM02409x" name="L-octanoylcarnitine" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C15H29NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02409x">
+            <rdf:Description rdf:about="#M_MAM02409x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:18102"/>
@@ -66828,10 +66864,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02410c" sboTerm="SBO:0000247" id="MAM02410c" name="L-oleoylcarnitine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H47NO4">
+      <species metaid="M_MAM02410c" sboTerm="SBO:0000247" id="M_MAM02410c" name="L-oleoylcarnitine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H47NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02410c">
+            <rdf:Description rdf:about="#M_MAM02410c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM65475"/>
@@ -66841,10 +66877,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02410m" sboTerm="SBO:0000247" id="MAM02410m" name="L-oleoylcarnitine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H47NO4">
+      <species metaid="M_MAM02410m" sboTerm="SBO:0000247" id="M_MAM02410m" name="L-oleoylcarnitine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H47NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02410m">
+            <rdf:Description rdf:about="#M_MAM02410m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM65475"/>
@@ -66854,10 +66890,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02410r" sboTerm="SBO:0000247" id="MAM02410r" name="L-oleoylcarnitine" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H47NO4">
+      <species metaid="M_MAM02410r" sboTerm="SBO:0000247" id="M_MAM02410r" name="L-oleoylcarnitine" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H47NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02410r">
+            <rdf:Description rdf:about="#M_MAM02410r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM65475"/>
@@ -66867,10 +66903,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02411c" sboTerm="SBO:0000247" id="MAM02411c" name="L-palmitoylcarnitine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H45NO4">
+      <species metaid="M_MAM02411c" sboTerm="SBO:0000247" id="M_MAM02411c" name="L-palmitoylcarnitine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H45NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02411c">
+            <rdf:Description rdf:about="#M_MAM02411c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pmtcrn"/>
@@ -66889,10 +66925,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02411m" sboTerm="SBO:0000247" id="MAM02411m" name="L-palmitoylcarnitine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H45NO4">
+      <species metaid="M_MAM02411m" sboTerm="SBO:0000247" id="M_MAM02411m" name="L-palmitoylcarnitine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H45NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02411m">
+            <rdf:Description rdf:about="#M_MAM02411m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pmtcrn"/>
@@ -66911,10 +66947,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02411r" sboTerm="SBO:0000247" id="MAM02411r" name="L-palmitoylcarnitine" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H45NO4">
+      <species metaid="M_MAM02411r" sboTerm="SBO:0000247" id="M_MAM02411r" name="L-palmitoylcarnitine" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H45NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02411r">
+            <rdf:Description rdf:about="#M_MAM02411r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pmtcrn"/>
@@ -66933,10 +66969,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02412c" sboTerm="SBO:0000247" id="MAM02412c" name="L-phenylalanyl-tRNA(phe)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C9H11NOR">
+      <species metaid="M_MAM02412c" sboTerm="SBO:0000247" id="M_MAM02412c" name="L-phenylalanyl-tRNA(phe)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C9H11NOR">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02412c">
+            <rdf:Description rdf:about="#M_MAM02412c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:29153"/>
@@ -66949,10 +66985,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02413x" sboTerm="SBO:0000247" id="MAM02413x" name="L-pipecolate" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H11NO2">
+      <species metaid="M_MAM02413x" sboTerm="SBO:0000247" id="M_MAM02413x" name="L-pipecolate" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H11NO2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02413x">
+            <rdf:Description rdf:about="#M_MAM02413x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/Lpipecol"/>
@@ -66969,10 +67005,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02414c" sboTerm="SBO:0000247" id="MAM02414c" name="LPL" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C2380H3698N650O700S17">
+      <species metaid="M_MAM02414c" sboTerm="SBO:0000247" id="M_MAM02414c" name="LPL" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C2380H3698N650O700S17">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02414c">
+            <rdf:Description rdf:about="#M_MAM02414c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/PROTEIN"/>
@@ -66983,10 +67019,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02414l" sboTerm="SBO:0000247" id="MAM02414l" name="LPL" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C2380H3698N650O700S17">
+      <species metaid="M_MAM02414l" sboTerm="SBO:0000247" id="M_MAM02414l" name="LPL" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C2380H3698N650O700S17">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02414l">
+            <rdf:Description rdf:about="#M_MAM02414l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/PROTEIN"/>
@@ -66997,10 +67033,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02414e" sboTerm="SBO:0000247" id="MAM02414e" name="LPL" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C2380H3698N650O700S17">
+      <species metaid="M_MAM02414e" sboTerm="SBO:0000247" id="M_MAM02414e" name="LPL" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C2380H3698N650O700S17">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02414e">
+            <rdf:Description rdf:about="#M_MAM02414e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/PROTEIN"/>
@@ -67011,10 +67047,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02415c" sboTerm="SBO:0000247" id="MAM02415c" name="L-prolyl-tRNA(pro)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C5H9NOR">
+      <species metaid="M_MAM02415c" sboTerm="SBO:0000247" id="M_MAM02415c" name="L-prolyl-tRNA(pro)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C5H9NOR">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02415c">
+            <rdf:Description rdf:about="#M_MAM02415c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:29154"/>
@@ -67027,10 +67063,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02416c" sboTerm="SBO:0000247" id="MAM02416c" name="L-seryl-tRNA(ser)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C3H7NO2R">
+      <species metaid="M_MAM02416c" sboTerm="SBO:0000247" id="M_MAM02416c" name="L-seryl-tRNA(ser)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C3H7NO2R">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02416c">
+            <rdf:Description rdf:about="#M_MAM02416c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:29162"/>
@@ -67043,10 +67079,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02417c" sboTerm="SBO:0000247" id="MAM02417c" name="L-sorbose" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H12O6">
+      <species metaid="M_MAM02417c" sboTerm="SBO:0000247" id="M_MAM02417c" name="L-sorbose" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H12O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02417c">
+            <rdf:Description rdf:about="#M_MAM02417c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:10295"/>
@@ -67062,10 +67098,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02418c" sboTerm="SBO:0000247" id="MAM02418c" name="LTD4" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C25H39N2O6S">
+      <species metaid="M_MAM02418c" sboTerm="SBO:0000247" id="M_MAM02418c" name="LTD4" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C25H39N2O6S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02418c">
+            <rdf:Description rdf:about="#M_MAM02418c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/leuktrD4"/>
@@ -67082,10 +67118,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02418r" sboTerm="SBO:0000247" id="MAM02418r" name="LTD4" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C25H39N2O6S">
+      <species metaid="M_MAM02418r" sboTerm="SBO:0000247" id="M_MAM02418r" name="LTD4" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C25H39N2O6S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02418r">
+            <rdf:Description rdf:about="#M_MAM02418r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/leuktrD4"/>
@@ -67102,10 +67138,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02418e" sboTerm="SBO:0000247" id="MAM02418e" name="LTD4" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C25H39N2O6S">
+      <species metaid="M_MAM02418e" sboTerm="SBO:0000247" id="M_MAM02418e" name="LTD4" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C25H39N2O6S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02418e">
+            <rdf:Description rdf:about="#M_MAM02418e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/leuktrD4"/>
@@ -67122,10 +67158,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02419c" sboTerm="SBO:0000247" id="MAM02419c" name="L-threonyl-tRNA(thr)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C4H9NO2R">
+      <species metaid="M_MAM02419c" sboTerm="SBO:0000247" id="M_MAM02419c" name="L-threonyl-tRNA(thr)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C4H9NO2R">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02419c">
+            <rdf:Description rdf:about="#M_MAM02419c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:29163"/>
@@ -67138,10 +67174,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02420c" sboTerm="SBO:0000247" id="MAM02420c" name="L-tryptophanyl-tRNA(trp)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C11H12N2OR">
+      <species metaid="M_MAM02420c" sboTerm="SBO:0000247" id="M_MAM02420c" name="L-tryptophanyl-tRNA(trp)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C11H12N2OR">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02420c">
+            <rdf:Description rdf:about="#M_MAM02420c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:29159"/>
@@ -67154,10 +67190,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02421c" sboTerm="SBO:0000247" id="MAM02421c" name="L-tyrosyl-tRNA(tyr)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C9H11NO2R">
+      <species metaid="M_MAM02421c" sboTerm="SBO:0000247" id="M_MAM02421c" name="L-tyrosyl-tRNA(tyr)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C9H11NO2R">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02421c">
+            <rdf:Description rdf:about="#M_MAM02421c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:29161"/>
@@ -67170,10 +67206,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02422c" sboTerm="SBO:0000247" id="MAM02422c" name="lumisterol 3" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H44O">
+      <species metaid="M_MAM02422c" sboTerm="SBO:0000247" id="M_MAM02422c" name="lumisterol 3" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H44O">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02422c">
+            <rdf:Description rdf:about="#M_MAM02422c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/lum3"/>
@@ -67187,10 +67223,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02423c" sboTerm="SBO:0000247" id="MAM02423c" name="L-valyl-tRNA(val)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C5H11NOR">
+      <species metaid="M_MAM02423c" sboTerm="SBO:0000247" id="M_MAM02423c" name="L-valyl-tRNA(val)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C5H11NOR">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02423c">
+            <rdf:Description rdf:about="#M_MAM02423c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:29164"/>
@@ -67203,10 +67239,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02424c" sboTerm="SBO:0000247" id="MAM02424c" name="L-xylonate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C5H9O6">
+      <species metaid="M_MAM02424c" sboTerm="SBO:0000247" id="M_MAM02424c" name="L-xylonate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C5H9O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02424c">
+            <rdf:Description rdf:about="#M_MAM02424c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/xylnt"/>
@@ -67222,10 +67258,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02425c" sboTerm="SBO:0000247" id="MAM02425c" name="L-xylulose" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H10O5">
+      <species metaid="M_MAM02425c" sboTerm="SBO:0000247" id="M_MAM02425c" name="L-xylulose" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H10O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02425c">
+            <rdf:Description rdf:about="#M_MAM02425c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/xylu__L"/>
@@ -67242,10 +67278,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02426c" sboTerm="SBO:0000247" id="MAM02426c" name="lysine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C6H15N2O2">
+      <species metaid="M_MAM02426c" sboTerm="SBO:0000247" id="M_MAM02426c" name="lysine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C6H15N2O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02426c">
+            <rdf:Description rdf:about="#M_MAM02426c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/lys__L"/>
@@ -67261,10 +67297,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02426l" sboTerm="SBO:0000247" id="MAM02426l" name="lysine" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C6H15N2O2">
+      <species metaid="M_MAM02426l" sboTerm="SBO:0000247" id="M_MAM02426l" name="lysine" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C6H15N2O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02426l">
+            <rdf:Description rdf:about="#M_MAM02426l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/lys__L"/>
@@ -67280,10 +67316,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02426m" sboTerm="SBO:0000247" id="MAM02426m" name="lysine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C6H15N2O2">
+      <species metaid="M_MAM02426m" sboTerm="SBO:0000247" id="M_MAM02426m" name="lysine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C6H15N2O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02426m">
+            <rdf:Description rdf:about="#M_MAM02426m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/lys__L"/>
@@ -67299,10 +67335,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02426n" sboTerm="SBO:0000247" id="MAM02426n" name="lysine" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C6H15N2O2">
+      <species metaid="M_MAM02426n" sboTerm="SBO:0000247" id="M_MAM02426n" name="lysine" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C6H15N2O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02426n">
+            <rdf:Description rdf:about="#M_MAM02426n">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/lys__L"/>
@@ -67318,10 +67354,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02426x" sboTerm="SBO:0000247" id="MAM02426x" name="lysine" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C6H15N2O2">
+      <species metaid="M_MAM02426x" sboTerm="SBO:0000247" id="M_MAM02426x" name="lysine" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C6H15N2O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02426x">
+            <rdf:Description rdf:about="#M_MAM02426x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/lys__L"/>
@@ -67337,10 +67373,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02426e" sboTerm="SBO:0000247" id="MAM02426e" name="lysine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C6H15N2O2">
+      <species metaid="M_MAM02426e" sboTerm="SBO:0000247" id="M_MAM02426e" name="lysine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C6H15N2O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02426e">
+            <rdf:Description rdf:about="#M_MAM02426e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/lys__L"/>
@@ -67356,10 +67392,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02427c" sboTerm="SBO:0000247" id="MAM02427c" name="lysosomal-enzyme-D-mannose" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H11O6R">
+      <species metaid="M_MAM02427c" sboTerm="SBO:0000247" id="M_MAM02427c" name="lysosomal-enzyme-D-mannose" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H11O6R">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02427c">
+            <rdf:Description rdf:about="#M_MAM02427c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C03706"/>
@@ -67371,10 +67407,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02428c" sboTerm="SBO:0000247" id="MAM02428c" name="lysosomal-enzyme-N-acetyl-D-glucosaminyl-phospho-D-mannose" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C14H25NO14PR">
+      <species metaid="M_MAM02428c" sboTerm="SBO:0000247" id="M_MAM02428c" name="lysosomal-enzyme-N-acetyl-D-glucosaminyl-phospho-D-mannose" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C14H25NO14PR">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02428c">
+            <rdf:Description rdf:about="#M_MAM02428c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C04789"/>
@@ -67387,10 +67423,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02429c" sboTerm="SBO:0000247" id="MAM02429c" name="lysyl-proline" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C11H22N3O3">
+      <species metaid="M_MAM02429c" sboTerm="SBO:0000247" id="M_MAM02429c" name="lysyl-proline" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C11H22N3O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02429c">
+            <rdf:Description rdf:about="#M_MAM02429c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM19120"/>
@@ -67401,10 +67437,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02430r" sboTerm="SBO:0000247" id="MAM02430r" name="m2emgacpail heparan sulfate" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C53H94N2O36P2R2">
+      <species metaid="M_MAM02430r" sboTerm="SBO:0000247" id="M_MAM02430r" name="m2emgacpail heparan sulfate" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C53H94N2O36P2R2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02430r">
+            <rdf:Description rdf:about="#M_MAM02430r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/m2emgacpail_hs"/>
@@ -67416,10 +67452,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02431r" sboTerm="SBO:0000247" id="MAM02431r" name="m2gacpail heparan sulfate" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C45H78NO28PR2">
+      <species metaid="M_MAM02431r" sboTerm="SBO:0000247" id="M_MAM02431r" name="m2gacpail heparan sulfate" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C45H78NO28PR2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02431r">
+            <rdf:Description rdf:about="#M_MAM02431r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/m2gacpail_hs"/>
@@ -67431,10 +67467,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02432r" sboTerm="SBO:0000247" id="MAM02432r" name="m3emgacpail heparan sulfate" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C59H104N2O41P2R2">
+      <species metaid="M_MAM02432r" sboTerm="SBO:0000247" id="M_MAM02432r" name="m3emgacpail heparan sulfate" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C59H104N2O41P2R2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02432r">
+            <rdf:Description rdf:about="#M_MAM02432r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/m3emgacpail_hs"/>
@@ -67446,10 +67482,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02433r" sboTerm="SBO:0000247" id="MAM02433r" name="m3gacpail heparan sulfate" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C51H88NO33PR2">
+      <species metaid="M_MAM02433r" sboTerm="SBO:0000247" id="M_MAM02433r" name="m3gacpail heparan sulfate" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C51H88NO33PR2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02433r">
+            <rdf:Description rdf:about="#M_MAM02433r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/m3gacpail_hs"/>
@@ -67461,10 +67497,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02434r" sboTerm="SBO:0000247" id="MAM02434r" name="m3gacpail_prot heparan sulfate" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C51H88NO33PR2X">
+      <species metaid="M_MAM02434r" sboTerm="SBO:0000247" id="M_MAM02434r" name="m3gacpail_prot heparan sulfate" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C51H88NO33PR2X">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02434r">
+            <rdf:Description rdf:about="#M_MAM02434r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/m3gacpail_prot_hs"/>
@@ -67475,10 +67511,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02434c" sboTerm="SBO:0000247" id="MAM02434c" name="m3gacpail_prot heparan sulfate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C51H88NO33PR2X">
+      <species metaid="M_MAM02434c" sboTerm="SBO:0000247" id="M_MAM02434c" name="m3gacpail_prot heparan sulfate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C51H88NO33PR2X">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02434c">
+            <rdf:Description rdf:about="#M_MAM02434c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/m3gacpail_prot_hs"/>
@@ -67489,10 +67525,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02434e" sboTerm="SBO:0000247" id="MAM02434e" name="m3gacpail_prot heparan sulfate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C51H88NO33PR2X">
+      <species metaid="M_MAM02434e" sboTerm="SBO:0000247" id="M_MAM02434e" name="m3gacpail_prot heparan sulfate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C51H88NO33PR2X">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02434e">
+            <rdf:Description rdf:about="#M_MAM02434e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/m3gacpail_prot_hs"/>
@@ -67503,10 +67539,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02435c" sboTerm="SBO:0000247" id="MAM02435c" name="m7G(5&apos;)pppAm" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C32H44N10O29P5R2">
+      <species metaid="M_MAM02435c" sboTerm="SBO:0000247" id="M_MAM02435c" name="m7G(5&apos;)pppAm" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C32H44N10O29P5R2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02435c">
+            <rdf:Description rdf:about="#M_MAM02435c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C01972"/>
@@ -67518,10 +67554,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02436c" sboTerm="SBO:0000247" id="MAM02436c" name="m7G(5&apos;)pppm6Am (mRNA containing an N6,2&apos;-O-dimethyladenosine cap)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C33H46N10O29P5R2">
+      <species metaid="M_MAM02436c" sboTerm="SBO:0000247" id="M_MAM02436c" name="m7G(5&apos;)pppm6Am (mRNA containing an N6,2&apos;-O-dimethyladenosine cap)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C33H46N10O29P5R2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02436c">
+            <rdf:Description rdf:about="#M_MAM02436c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:17894"/>
@@ -67534,10 +67570,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02437c" sboTerm="SBO:0000247" id="MAM02437c" name="m7G(5&apos;)pppRm-RNA (mRNA containing a 2&apos;-O-methylpurine cap)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C27H39N5O29P5R3">
+      <species metaid="M_MAM02437c" sboTerm="SBO:0000247" id="M_MAM02437c" name="m7G(5&apos;)pppRm-RNA (mRNA containing a 2&apos;-O-methylpurine cap)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C27H39N5O29P5R3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02437c">
+            <rdf:Description rdf:about="#M_MAM02437c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C04802"/>
@@ -67549,10 +67585,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02438c" sboTerm="SBO:0000247" id="MAM02438c" name="m7G(5&apos;)pppR-RNA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C26H37N5O29P5R3">
+      <species metaid="M_MAM02438c" sboTerm="SBO:0000247" id="M_MAM02438c" name="m7G(5&apos;)pppR-RNA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C26H37N5O29P5R3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02438c">
+            <rdf:Description rdf:about="#M_MAM02438c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C02339"/>
@@ -67564,10 +67600,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02439c" sboTerm="SBO:0000247" id="MAM02439c" name="malate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C4H4O5">
+      <species metaid="M_MAM02439c" sboTerm="SBO:0000247" id="M_MAM02439c" name="malate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C4H4O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02439c">
+            <rdf:Description rdf:about="#M_MAM02439c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/mal__L"/>
@@ -67583,10 +67619,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02439m" sboTerm="SBO:0000247" id="MAM02439m" name="malate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C4H4O5">
+      <species metaid="M_MAM02439m" sboTerm="SBO:0000247" id="M_MAM02439m" name="malate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C4H4O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02439m">
+            <rdf:Description rdf:about="#M_MAM02439m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/mal__L"/>
@@ -67602,10 +67638,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02440c" sboTerm="SBO:0000247" id="MAM02440c" name="malonate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C3H2O4">
+      <species metaid="M_MAM02440c" sboTerm="SBO:0000247" id="M_MAM02440c" name="malonate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C3H2O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02440c">
+            <rdf:Description rdf:about="#M_MAM02440c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:30794"/>
@@ -67620,10 +67656,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02440m" sboTerm="SBO:0000247" id="MAM02440m" name="malonate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C3H2O4">
+      <species metaid="M_MAM02440m" sboTerm="SBO:0000247" id="M_MAM02440m" name="malonate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C3H2O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02440m">
+            <rdf:Description rdf:about="#M_MAM02440m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:30794"/>
@@ -67638,10 +67674,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02440e" sboTerm="SBO:0000247" id="MAM02440e" name="malonate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C3H2O4">
+      <species metaid="M_MAM02440e" sboTerm="SBO:0000247" id="M_MAM02440e" name="malonate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C3H2O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02440e">
+            <rdf:Description rdf:about="#M_MAM02440e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:30794"/>
@@ -67656,10 +67692,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02441c" sboTerm="SBO:0000247" id="MAM02441c" name="malonic-dialdehyde" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C3H3O2">
+      <species metaid="M_MAM02441c" sboTerm="SBO:0000247" id="M_MAM02441c" name="malonic-dialdehyde" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C3H3O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02441c">
+            <rdf:Description rdf:about="#M_MAM02441c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:566274"/>
@@ -67675,10 +67711,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02442c" sboTerm="SBO:0000247" id="MAM02442c" name="malonyl-[ACP]" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C14H22N2O10PRS">
+      <species metaid="M_MAM02442c" sboTerm="SBO:0000247" id="M_MAM02442c" name="malonyl-[ACP]" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C14H22N2O10PRS">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02442c">
+            <rdf:Description rdf:about="#M_MAM02442c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/malACP"/>
@@ -67691,10 +67727,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02443c" sboTerm="SBO:0000247" id="MAM02443c" name="malonyl-carnitin" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H16NO6">
+      <species metaid="M_MAM02443c" sboTerm="SBO:0000247" id="M_MAM02443c" name="malonyl-carnitin" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H16NO6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02443c">
+            <rdf:Description rdf:about="#M_MAM02443c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/hmdb/HMDB02095"/>
@@ -67707,10 +67743,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02443m" sboTerm="SBO:0000247" id="MAM02443m" name="malonyl-carnitin" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H16NO6">
+      <species metaid="M_MAM02443m" sboTerm="SBO:0000247" id="M_MAM02443m" name="malonyl-carnitin" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H16NO6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02443m">
+            <rdf:Description rdf:about="#M_MAM02443m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/hmdb/HMDB02095"/>
@@ -67723,10 +67759,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02443x" sboTerm="SBO:0000247" id="MAM02443x" name="malonyl-carnitin" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H16NO6">
+      <species metaid="M_MAM02443x" sboTerm="SBO:0000247" id="M_MAM02443x" name="malonyl-carnitin" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H16NO6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02443x">
+            <rdf:Description rdf:about="#M_MAM02443x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/hmdb/HMDB02095"/>
@@ -67739,10 +67775,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02443r" sboTerm="SBO:0000247" id="MAM02443r" name="malonyl-carnitin" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H16NO6">
+      <species metaid="M_MAM02443r" sboTerm="SBO:0000247" id="M_MAM02443r" name="malonyl-carnitin" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H16NO6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02443r">
+            <rdf:Description rdf:about="#M_MAM02443r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/hmdb/HMDB02095"/>
@@ -67755,10 +67791,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02444c" sboTerm="SBO:0000247" id="MAM02444c" name="malonyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C24H33N7O19P3S">
+      <species metaid="M_MAM02444c" sboTerm="SBO:0000247" id="M_MAM02444c" name="malonyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C24H33N7O19P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02444c">
+            <rdf:Description rdf:about="#M_MAM02444c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/malcoa"/>
@@ -67775,10 +67811,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02444m" sboTerm="SBO:0000247" id="MAM02444m" name="malonyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C24H33N7O19P3S">
+      <species metaid="M_MAM02444m" sboTerm="SBO:0000247" id="M_MAM02444m" name="malonyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C24H33N7O19P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02444m">
+            <rdf:Description rdf:about="#M_MAM02444m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/malcoa"/>
@@ -67795,10 +67831,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02444x" sboTerm="SBO:0000247" id="MAM02444x" name="malonyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C24H33N7O19P3S">
+      <species metaid="M_MAM02444x" sboTerm="SBO:0000247" id="M_MAM02444x" name="malonyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C24H33N7O19P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02444x">
+            <rdf:Description rdf:about="#M_MAM02444x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/malcoa"/>
@@ -67815,10 +67851,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02444r" sboTerm="SBO:0000247" id="MAM02444r" name="malonyl-CoA" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C24H33N7O19P3S">
+      <species metaid="M_MAM02444r" sboTerm="SBO:0000247" id="M_MAM02444r" name="malonyl-CoA" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C24H33N7O19P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02444r">
+            <rdf:Description rdf:about="#M_MAM02444r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/malcoa"/>
@@ -67835,10 +67871,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02445c" sboTerm="SBO:0000247" id="MAM02445c" name="maltodecaose" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C60H102O51">
+      <species metaid="M_MAM02445c" sboTerm="SBO:0000247" id="M_MAM02445c" name="maltodecaose" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C60H102O51">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02445c">
+            <rdf:Description rdf:about="#M_MAM02445c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM61023"/>
@@ -67850,10 +67886,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02445e" sboTerm="SBO:0000247" id="MAM02445e" name="maltodecaose" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C60H102O51">
+      <species metaid="M_MAM02445e" sboTerm="SBO:0000247" id="M_MAM02445e" name="maltodecaose" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C60H102O51">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02445e">
+            <rdf:Description rdf:about="#M_MAM02445e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM61023"/>
@@ -67865,10 +67901,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02446c" sboTerm="SBO:0000247" id="MAM02446c" name="maltoheptaose" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C42H72O36">
+      <species metaid="M_MAM02446c" sboTerm="SBO:0000247" id="M_MAM02446c" name="maltoheptaose" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C42H72O36">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02446c">
+            <rdf:Description rdf:about="#M_MAM02446c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/malthp"/>
@@ -67880,10 +67916,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02446e" sboTerm="SBO:0000247" id="MAM02446e" name="maltoheptaose" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C42H72O36">
+      <species metaid="M_MAM02446e" sboTerm="SBO:0000247" id="M_MAM02446e" name="maltoheptaose" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C42H72O36">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02446e">
+            <rdf:Description rdf:about="#M_MAM02446e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/malthp"/>
@@ -67896,10 +67932,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02447c" sboTerm="SBO:0000247" id="MAM02447c" name="maltohexaose" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C36H62O31">
+      <species metaid="M_MAM02447c" sboTerm="SBO:0000247" id="M_MAM02447c" name="maltohexaose" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C36H62O31">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02447c">
+            <rdf:Description rdf:about="#M_MAM02447c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/malthx"/>
@@ -67913,10 +67949,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02447e" sboTerm="SBO:0000247" id="MAM02447e" name="maltohexaose" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C36H62O31">
+      <species metaid="M_MAM02447e" sboTerm="SBO:0000247" id="M_MAM02447e" name="maltohexaose" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C36H62O31">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02447e">
+            <rdf:Description rdf:about="#M_MAM02447e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/malthx"/>
@@ -67931,10 +67967,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02448c" sboTerm="SBO:0000247" id="MAM02448c" name="maltononaose" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C54H92O46">
+      <species metaid="M_MAM02448c" sboTerm="SBO:0000247" id="M_MAM02448c" name="maltononaose" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C54H92O46">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02448c">
+            <rdf:Description rdf:about="#M_MAM02448c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM61030"/>
@@ -67946,10 +67982,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02448e" sboTerm="SBO:0000247" id="MAM02448e" name="maltononaose" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C54H92O46">
+      <species metaid="M_MAM02448e" sboTerm="SBO:0000247" id="M_MAM02448e" name="maltononaose" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C54H92O46">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02448e">
+            <rdf:Description rdf:about="#M_MAM02448e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM61030"/>
@@ -67961,10 +67997,10 @@
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         </annotation>
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-      <species metaid="MAM02449c" sboTerm="SBO:0000247" id="MAM02449c" name="maltopentaose" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C30H52O26">
+      <species metaid="M_MAM02449c" sboTerm="SBO:0000247" id="M_MAM02449c" name="maltopentaose" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C30H52O26">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02449c">
+            <rdf:Description rdf:about="#M_MAM02449c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/maltpt"/>
@@ -67977,10 +68013,10 @@
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-      <species metaid="MAM02449e" sboTerm="SBO:0000247" id="MAM02449e" name="maltopentaose" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C30H52O26">
+      <species metaid="M_MAM02449e" sboTerm="SBO:0000247" id="M_MAM02449e" name="maltopentaose" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C30H52O26">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02449e">
+            <rdf:Description rdf:about="#M_MAM02449e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/maltpt"/>
@@ -67994,10 +68030,10 @@
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         </annotation>
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-      <species metaid="MAM02450c" sboTerm="SBO:0000247" id="MAM02450c" name="maltose" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C12H22O11">
+      <species metaid="M_MAM02450c" sboTerm="SBO:0000247" id="M_MAM02450c" name="maltose" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C12H22O11">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02450c">
+            <rdf:Description rdf:about="#M_MAM02450c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/malt"/>
@@ -68013,10 +68049,10 @@
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         </annotation>
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-      <species metaid="MAM02450l" sboTerm="SBO:0000247" id="MAM02450l" name="maltose" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C12H22O11">
+      <species metaid="M_MAM02450l" sboTerm="SBO:0000247" id="M_MAM02450l" name="maltose" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C12H22O11">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02450l">
+            <rdf:Description rdf:about="#M_MAM02450l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/malt"/>
@@ -68032,10 +68068,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM02450e" sboTerm="SBO:0000247" id="MAM02450e" name="maltose" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C12H22O11">
+      <species metaid="M_MAM02450e" sboTerm="SBO:0000247" id="M_MAM02450e" name="maltose" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C12H22O11">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02450e">
+            <rdf:Description rdf:about="#M_MAM02450e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/malt"/>
@@ -68051,10 +68087,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02451c" sboTerm="SBO:0000247" id="MAM02451c" name="maltotetraose" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C24H42O21">
+      <species metaid="M_MAM02451c" sboTerm="SBO:0000247" id="M_MAM02451c" name="maltotetraose" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C24H42O21">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02451c">
+            <rdf:Description rdf:about="#M_MAM02451c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/maltttr"/>
@@ -68071,10 +68107,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02451e" sboTerm="SBO:0000247" id="MAM02451e" name="maltotetraose" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C24H42O21">
+      <species metaid="M_MAM02451e" sboTerm="SBO:0000247" id="M_MAM02451e" name="maltotetraose" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C24H42O21">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02451e">
+            <rdf:Description rdf:about="#M_MAM02451e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/maltttr"/>
@@ -68091,10 +68127,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02452c" sboTerm="SBO:0000247" id="MAM02452c" name="maltotriose" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H32O16">
+      <species metaid="M_MAM02452c" sboTerm="SBO:0000247" id="M_MAM02452c" name="maltotriose" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H32O16">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02452c">
+            <rdf:Description rdf:about="#M_MAM02452c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/malttr"/>
@@ -68110,10 +68146,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02452l" sboTerm="SBO:0000247" id="MAM02452l" name="maltotriose" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H32O16">
+      <species metaid="M_MAM02452l" sboTerm="SBO:0000247" id="M_MAM02452l" name="maltotriose" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H32O16">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02452l">
+            <rdf:Description rdf:about="#M_MAM02452l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/malttr"/>
@@ -68129,10 +68165,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02452e" sboTerm="SBO:0000247" id="MAM02452e" name="maltotriose" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H32O16">
+      <species metaid="M_MAM02452e" sboTerm="SBO:0000247" id="M_MAM02452e" name="maltotriose" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H32O16">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02452e">
+            <rdf:Description rdf:about="#M_MAM02452e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/malttr"/>
@@ -68148,10 +68184,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02453c" sboTerm="SBO:0000247" id="MAM02453c" name="mannose" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H12O6">
+      <species metaid="M_MAM02453c" sboTerm="SBO:0000247" id="M_MAM02453c" name="mannose" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H12O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02453c">
+            <rdf:Description rdf:about="#M_MAM02453c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/man"/>
@@ -68167,10 +68203,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02453g" sboTerm="SBO:0000247" id="MAM02453g" name="mannose" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H12O6">
+      <species metaid="M_MAM02453g" sboTerm="SBO:0000247" id="M_MAM02453g" name="mannose" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H12O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02453g">
+            <rdf:Description rdf:about="#M_MAM02453g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/man"/>
@@ -68186,10 +68222,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02453l" sboTerm="SBO:0000247" id="MAM02453l" name="mannose" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H12O6">
+      <species metaid="M_MAM02453l" sboTerm="SBO:0000247" id="M_MAM02453l" name="mannose" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H12O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02453l">
+            <rdf:Description rdf:about="#M_MAM02453l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/man"/>
@@ -68205,10 +68241,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02453r" sboTerm="SBO:0000247" id="MAM02453r" name="mannose" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H12O6">
+      <species metaid="M_MAM02453r" sboTerm="SBO:0000247" id="M_MAM02453r" name="mannose" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H12O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02453r">
+            <rdf:Description rdf:about="#M_MAM02453r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/man"/>
@@ -68224,10 +68260,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02453e" sboTerm="SBO:0000247" id="MAM02453e" name="mannose" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H12O6">
+      <species metaid="M_MAM02453e" sboTerm="SBO:0000247" id="M_MAM02453e" name="mannose" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H12O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02453e">
+            <rdf:Description rdf:about="#M_MAM02453e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/man"/>
@@ -68243,10 +68279,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02454c" sboTerm="SBO:0000247" id="MAM02454c" name="mannose-1-phosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H11O9P">
+      <species metaid="M_MAM02454c" sboTerm="SBO:0000247" id="M_MAM02454c" name="mannose-1-phosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H11O9P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02454c">
+            <rdf:Description rdf:about="#M_MAM02454c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/man1p"/>
@@ -68262,10 +68298,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02455c" sboTerm="SBO:0000247" id="MAM02455c" name="mannose-6-phosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H11O9P">
+      <species metaid="M_MAM02455c" sboTerm="SBO:0000247" id="M_MAM02455c" name="mannose-6-phosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H11O9P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02455c">
+            <rdf:Description rdf:about="#M_MAM02455c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/man6p"/>
@@ -68280,10 +68316,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02456c" sboTerm="SBO:0000247" id="MAM02456c" name="margaric acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C17H33O2">
+      <species metaid="M_MAM02456c" sboTerm="SBO:0000247" id="M_MAM02456c" name="margaric acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C17H33O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02456c">
+            <rdf:Description rdf:about="#M_MAM02456c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hpdca"/>
@@ -68300,10 +68336,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02456l" sboTerm="SBO:0000247" id="MAM02456l" name="margaric acid" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C17H33O2">
+      <species metaid="M_MAM02456l" sboTerm="SBO:0000247" id="M_MAM02456l" name="margaric acid" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C17H33O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02456l">
+            <rdf:Description rdf:about="#M_MAM02456l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hpdca"/>
@@ -68320,10 +68356,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02456r" sboTerm="SBO:0000247" id="MAM02456r" name="margaric acid" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C17H33O2">
+      <species metaid="M_MAM02456r" sboTerm="SBO:0000247" id="M_MAM02456r" name="margaric acid" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C17H33O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02456r">
+            <rdf:Description rdf:about="#M_MAM02456r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hpdca"/>
@@ -68340,10 +68376,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02456e" sboTerm="SBO:0000247" id="MAM02456e" name="margaric acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C17H33O2">
+      <species metaid="M_MAM02456e" sboTerm="SBO:0000247" id="M_MAM02456e" name="margaric acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C17H33O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02456e">
+            <rdf:Description rdf:about="#M_MAM02456e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hpdca"/>
@@ -68360,10 +68396,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02457c" sboTerm="SBO:0000247" id="MAM02457c" name="mead acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H33O2">
+      <species metaid="M_MAM02457c" sboTerm="SBO:0000247" id="M_MAM02457c" name="mead acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H33O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02457c">
+            <rdf:Description rdf:about="#M_MAM02457c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:1306412"/>
@@ -68379,10 +68415,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02457l" sboTerm="SBO:0000247" id="MAM02457l" name="mead acid" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H33O2">
+      <species metaid="M_MAM02457l" sboTerm="SBO:0000247" id="M_MAM02457l" name="mead acid" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H33O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02457l">
+            <rdf:Description rdf:about="#M_MAM02457l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:1306412"/>
@@ -68398,10 +68434,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02457r" sboTerm="SBO:0000247" id="MAM02457r" name="mead acid" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H33O2">
+      <species metaid="M_MAM02457r" sboTerm="SBO:0000247" id="M_MAM02457r" name="mead acid" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H33O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02457r">
+            <rdf:Description rdf:about="#M_MAM02457r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:1306412"/>
@@ -68417,10 +68453,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02457e" sboTerm="SBO:0000247" id="MAM02457e" name="mead acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H33O2">
+      <species metaid="M_MAM02457e" sboTerm="SBO:0000247" id="M_MAM02457e" name="mead acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H33O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02457e">
+            <rdf:Description rdf:about="#M_MAM02457e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:1306412"/>
@@ -68436,10 +68472,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02458c" sboTerm="SBO:0000247" id="MAM02458c" name="eumelanin" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C17H9N2O7">
+      <species metaid="M_MAM02458c" sboTerm="SBO:0000247" id="M_MAM02458c" name="eumelanin" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C17H9N2O7">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02458c">
+            <rdf:Description rdf:about="#M_MAM02458c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C17937"/>
@@ -68451,10 +68487,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02458e" sboTerm="SBO:0000247" id="MAM02458e" name="eumelanin" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C17H9N2O7">
+      <species metaid="M_MAM02458e" sboTerm="SBO:0000247" id="M_MAM02458e" name="eumelanin" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C17H9N2O7">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02458e">
+            <rdf:Description rdf:about="#M_MAM02458e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C17937"/>
@@ -68466,10 +68502,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02459c" sboTerm="SBO:0000247" id="MAM02459c" name="melatonin radical" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C13H17N2O3">
+      <species metaid="M_MAM02459c" sboTerm="SBO:0000247" id="M_MAM02459c" name="melatonin radical" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C13H17N2O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02459c">
+            <rdf:Description rdf:about="#M_MAM02459c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM157785"/>
@@ -68480,10 +68516,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02460c" sboTerm="SBO:0000247" id="MAM02460c" name="melatonin" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C13H16N2O2">
+      <species metaid="M_MAM02460c" sboTerm="SBO:0000247" id="M_MAM02460c" name="melatonin" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C13H16N2O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02460c">
+            <rdf:Description rdf:about="#M_MAM02460c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/melatn"/>
@@ -68501,10 +68537,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02461r" sboTerm="SBO:0000247" id="MAM02461r" name="mem2emgacpail heparan sulfate" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C61H110N3O44P3R2">
+      <species metaid="M_MAM02461r" sboTerm="SBO:0000247" id="M_MAM02461r" name="mem2emgacpail heparan sulfate" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C61H110N3O44P3R2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02461r">
+            <rdf:Description rdf:about="#M_MAM02461r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/mem2emgacpail_hs"/>
@@ -68516,10 +68552,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02462r" sboTerm="SBO:0000247" id="MAM02462r" name="mem2emgacpail_prot heparan sulfate" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C61H110N3O44P3R2X">
+      <species metaid="M_MAM02462r" sboTerm="SBO:0000247" id="M_MAM02462r" name="mem2emgacpail_prot heparan sulfate" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C61H110N3O44P3R2X">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02462r">
+            <rdf:Description rdf:about="#M_MAM02462r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/mem2emgacpail_prot_hs"/>
@@ -68531,10 +68567,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02462c" sboTerm="SBO:0000247" id="MAM02462c" name="mem2emgacpail_prot heparan sulfate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C61H110N3O44P3R2X">
+      <species metaid="M_MAM02462c" sboTerm="SBO:0000247" id="M_MAM02462c" name="mem2emgacpail_prot heparan sulfate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C61H110N3O44P3R2X">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02462c">
+            <rdf:Description rdf:about="#M_MAM02462c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/mem2emgacpail_prot_hs"/>
@@ -68546,10 +68582,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02462e" sboTerm="SBO:0000247" id="MAM02462e" name="mem2emgacpail_prot heparan sulfate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C61H110N3O44P3R2X">
+      <species metaid="M_MAM02462e" sboTerm="SBO:0000247" id="M_MAM02462e" name="mem2emgacpail_prot heparan sulfate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C61H110N3O44P3R2X">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02462e">
+            <rdf:Description rdf:about="#M_MAM02462e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/mem2emgacpail_prot_hs"/>
@@ -68561,10 +68597,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02463r" sboTerm="SBO:0000247" id="MAM02463r" name="memgacpail heparan sulfate" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C47H84N2O31P2R2">
+      <species metaid="M_MAM02463r" sboTerm="SBO:0000247" id="M_MAM02463r" name="memgacpail heparan sulfate" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C47H84N2O31P2R2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02463r">
+            <rdf:Description rdf:about="#M_MAM02463r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/memgacpail_hs"/>
@@ -68576,10 +68612,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02464c" sboTerm="SBO:0000247" id="MAM02464c" name="mercaptopyruvate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C3H3O3S">
+      <species metaid="M_MAM02464c" sboTerm="SBO:0000247" id="M_MAM02464c" name="mercaptopyruvate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C3H3O3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02464c">
+            <rdf:Description rdf:about="#M_MAM02464c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/mercppyr"/>
@@ -68593,10 +68629,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02464m" sboTerm="SBO:0000247" id="MAM02464m" name="mercaptopyruvate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C3H3O3S">
+      <species metaid="M_MAM02464m" sboTerm="SBO:0000247" id="M_MAM02464m" name="mercaptopyruvate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C3H3O3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02464m">
+            <rdf:Description rdf:about="#M_MAM02464m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/mercppyr"/>
@@ -68610,10 +68646,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02465m" sboTerm="SBO:0000247" id="MAM02465m" name="mesaconate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C5H4O4">
+      <species metaid="M_MAM02465m" sboTerm="SBO:0000247" id="M_MAM02465m" name="mesaconate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C5H4O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02465m">
+            <rdf:Description rdf:about="#M_MAM02465m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/mescon"/>
@@ -68629,10 +68665,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02466m" sboTerm="SBO:0000247" id="MAM02466m" name="mesaconyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C26H35N7O19P3S">
+      <species metaid="M_MAM02466m" sboTerm="SBO:0000247" id="M_MAM02466m" name="mesaconyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C26H35N7O19P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02466m">
+            <rdf:Description rdf:about="#M_MAM02466m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/mescoa"/>
@@ -68647,10 +68683,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02467c" sboTerm="SBO:0000247" id="MAM02467c" name="metformin" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H11N5">
+      <species metaid="M_MAM02467c" sboTerm="SBO:0000247" id="M_MAM02467c" name="metformin" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H11N5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02467c">
+            <rdf:Description rdf:about="#M_MAM02467c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:6801"/>
@@ -68664,10 +68700,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02467e" sboTerm="SBO:0000247" id="MAM02467e" name="metformin" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H11N5">
+      <species metaid="M_MAM02467e" sboTerm="SBO:0000247" id="M_MAM02467e" name="metformin" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H11N5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02467e">
+            <rdf:Description rdf:about="#M_MAM02467e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:6801"/>
@@ -68681,10 +68717,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02468m" sboTerm="SBO:0000247" id="MAM02468m" name="methacrylyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C25H36N7O17P3S">
+      <species metaid="M_MAM02468m" sboTerm="SBO:0000247" id="M_MAM02468m" name="methacrylyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C25H36N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02468m">
+            <rdf:Description rdf:about="#M_MAM02468m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/2mp2coa"/>
@@ -68698,10 +68734,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02469c" sboTerm="SBO:0000247" id="MAM02469c" name="methaneselenol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="CH4Se">
+      <species metaid="M_MAM02469c" sboTerm="SBO:0000247" id="M_MAM02469c" name="methaneselenol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="CH4Se">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02469c">
+            <rdf:Description rdf:about="#M_MAM02469c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C05703"/>
@@ -68713,10 +68749,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02470c" sboTerm="SBO:0000247" id="MAM02470c" name="methanol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="CH4O1">
+      <species metaid="M_MAM02470c" sboTerm="SBO:0000247" id="M_MAM02470c" name="methanol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="CH4O1">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02470c">
+            <rdf:Description rdf:about="#M_MAM02470c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/meoh"/>
@@ -68732,10 +68768,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02470l" sboTerm="SBO:0000247" id="MAM02470l" name="methanol" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="CH4O1">
+      <species metaid="M_MAM02470l" sboTerm="SBO:0000247" id="M_MAM02470l" name="methanol" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="CH4O1">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02470l">
+            <rdf:Description rdf:about="#M_MAM02470l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/meoh"/>
@@ -68751,10 +68787,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02470r" sboTerm="SBO:0000247" id="MAM02470r" name="methanol" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="CH4O1">
+      <species metaid="M_MAM02470r" sboTerm="SBO:0000247" id="M_MAM02470r" name="methanol" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="CH4O1">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02470r">
+            <rdf:Description rdf:about="#M_MAM02470r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/meoh"/>
@@ -68770,10 +68806,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02470e" sboTerm="SBO:0000247" id="MAM02470e" name="methanol" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="CH4O1">
+      <species metaid="M_MAM02470e" sboTerm="SBO:0000247" id="M_MAM02470e" name="methanol" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="CH4O1">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02470e">
+            <rdf:Description rdf:about="#M_MAM02470e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/meoh"/>
@@ -68789,10 +68825,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02471c" sboTerm="SBO:0000247" id="MAM02471c" name="methionine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H11NO2S">
+      <species metaid="M_MAM02471c" sboTerm="SBO:0000247" id="M_MAM02471c" name="methionine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H11NO2S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02471c">
+            <rdf:Description rdf:about="#M_MAM02471c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/met__L"/>
@@ -68808,10 +68844,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02471l" sboTerm="SBO:0000247" id="MAM02471l" name="methionine" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H11NO2S">
+      <species metaid="M_MAM02471l" sboTerm="SBO:0000247" id="M_MAM02471l" name="methionine" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H11NO2S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02471l">
+            <rdf:Description rdf:about="#M_MAM02471l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/met__L"/>
@@ -68827,10 +68863,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02471m" sboTerm="SBO:0000247" id="MAM02471m" name="methionine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H11NO2S">
+      <species metaid="M_MAM02471m" sboTerm="SBO:0000247" id="M_MAM02471m" name="methionine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H11NO2S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02471m">
+            <rdf:Description rdf:about="#M_MAM02471m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/met__L"/>
@@ -68846,10 +68882,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02471e" sboTerm="SBO:0000247" id="MAM02471e" name="methionine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H11NO2S">
+      <species metaid="M_MAM02471e" sboTerm="SBO:0000247" id="M_MAM02471e" name="methionine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H11NO2S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02471e">
+            <rdf:Description rdf:about="#M_MAM02471e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/met__L"/>
@@ -68865,10 +68901,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02472c" sboTerm="SBO:0000247" id="MAM02472c" name="methionyl-peptide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C11H17N4O5SR3">
+      <species metaid="M_MAM02472c" sboTerm="SBO:0000247" id="M_MAM02472c" name="methionyl-peptide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C11H17N4O5SR3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02472c">
+            <rdf:Description rdf:about="#M_MAM02472c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C11440"/>
@@ -68880,10 +68916,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02473c" sboTerm="SBO:0000247" id="MAM02473c" name="methylamine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C1H6N">
+      <species metaid="M_MAM02473c" sboTerm="SBO:0000247" id="M_MAM02473c" name="methylamine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C1H6N">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02473c">
+            <rdf:Description rdf:about="#M_MAM02473c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/mma"/>
@@ -68899,10 +68935,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02475c" sboTerm="SBO:0000247" id="MAM02475c" name="methylglyoxal" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H4O2">
+      <species metaid="M_MAM02475c" sboTerm="SBO:0000247" id="M_MAM02475c" name="methylglyoxal" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H4O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02475c">
+            <rdf:Description rdf:about="#M_MAM02475c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/mthgxl"/>
@@ -68917,10 +68953,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02475e" sboTerm="SBO:0000247" id="MAM02475e" name="methylglyoxal" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H4O2">
+      <species metaid="M_MAM02475e" sboTerm="SBO:0000247" id="M_MAM02475e" name="methylglyoxal" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H4O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02475e">
+            <rdf:Description rdf:about="#M_MAM02475e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/mthgxl"/>
@@ -68935,10 +68971,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02476c" sboTerm="SBO:0000247" id="MAM02476c" name="methylimidazole-acetaldehyde" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H8N2O">
+      <species metaid="M_MAM02476c" sboTerm="SBO:0000247" id="M_MAM02476c" name="methylimidazole-acetaldehyde" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H8N2O">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02476c">
+            <rdf:Description rdf:about="#M_MAM02476c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/3mldz"/>
@@ -68954,10 +68990,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02477c" sboTerm="SBO:0000247" id="MAM02477c" name="methylimidazoleacetic acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H7N2O2">
+      <species metaid="M_MAM02477c" sboTerm="SBO:0000247" id="M_MAM02477c" name="methylimidazoleacetic acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H7N2O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02477c">
+            <rdf:Description rdf:about="#M_MAM02477c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/3mlda"/>
@@ -68974,10 +69010,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02477e" sboTerm="SBO:0000247" id="MAM02477e" name="methylimidazoleacetic acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H7N2O2">
+      <species metaid="M_MAM02477e" sboTerm="SBO:0000247" id="M_MAM02477e" name="methylimidazoleacetic acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H7N2O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02477e">
+            <rdf:Description rdf:about="#M_MAM02477e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/3mlda"/>
@@ -68994,10 +69030,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02479c" sboTerm="SBO:0000247" id="MAM02479c" name="methylmalonate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C4H4O4">
+      <species metaid="M_MAM02479c" sboTerm="SBO:0000247" id="M_MAM02479c" name="methylmalonate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C4H4O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02479c">
+            <rdf:Description rdf:about="#M_MAM02479c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:30860"/>
@@ -69012,10 +69048,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02479m" sboTerm="SBO:0000247" id="MAM02479m" name="methylmalonate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C4H4O4">
+      <species metaid="M_MAM02479m" sboTerm="SBO:0000247" id="M_MAM02479m" name="methylmalonate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C4H4O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02479m">
+            <rdf:Description rdf:about="#M_MAM02479m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:30860"/>
@@ -69030,10 +69066,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02480m" sboTerm="SBO:0000247" id="MAM02480m" name="methylmalonyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C25H35N7O19P3S">
+      <species metaid="M_MAM02480m" sboTerm="SBO:0000247" id="M_MAM02480m" name="methylmalonyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C25H35N7O19P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02480m">
+            <rdf:Description rdf:about="#M_MAM02480m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/mmcoa__S"/>
@@ -69049,10 +69085,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02481c" sboTerm="SBO:0000247" id="MAM02481c" name="methylthioribose-1p" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H11O7PS">
+      <species metaid="M_MAM02481c" sboTerm="SBO:0000247" id="M_MAM02481c" name="methylthioribose-1p" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H11O7PS">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02481c">
+            <rdf:Description rdf:about="#M_MAM02481c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/5mdr1p"/>
@@ -69066,10 +69102,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02482c" sboTerm="SBO:0000247" id="MAM02482c" name="Mg2+" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="Mg">
+      <species metaid="M_MAM02482c" sboTerm="SBO:0000247" id="M_MAM02482c" name="Mg2+" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="Mg">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02482c">
+            <rdf:Description rdf:about="#M_MAM02482c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:18420"/>
@@ -69082,10 +69118,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02482e" sboTerm="SBO:0000247" id="MAM02482e" name="Mg2+" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="Mg">
+      <species metaid="M_MAM02482e" sboTerm="SBO:0000247" id="M_MAM02482e" name="Mg2+" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="Mg">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02482e">
+            <rdf:Description rdf:about="#M_MAM02482e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:18420"/>
@@ -69098,10 +69134,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02483r" sboTerm="SBO:0000247" id="MAM02483r" name="mgacpail heparan sulfate" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C39H68NO23PR2">
+      <species metaid="M_MAM02483r" sboTerm="SBO:0000247" id="M_MAM02483r" name="mgacpail heparan sulfate" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C39H68NO23PR2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02483r">
+            <rdf:Description rdf:about="#M_MAM02483r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/mgacpail_hs"/>
@@ -69113,10 +69149,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02484m" sboTerm="SBO:0000247" id="MAM02484m" name="mitoACP" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C11H21N2O7PRS">
+      <species metaid="M_MAM02484m" sboTerm="SBO:0000247" id="M_MAM02484m" name="mitoACP" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C11H21N2O7PRS">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02484m">
+            <rdf:Description rdf:about="#M_MAM02484m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:64479"/>
@@ -69130,10 +69166,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02485c" sboTerm="SBO:0000247" id="MAM02485c" name="mitoApo-[ACP]" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="HOR">
+      <species metaid="M_MAM02485c" sboTerm="SBO:0000247" id="M_MAM02485c" name="mitoApo-[ACP]" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="HOR">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02485c">
+            <rdf:Description rdf:about="#M_MAM02485c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:29999"/>
@@ -69147,10 +69183,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02485m" sboTerm="SBO:0000247" id="MAM02485m" name="mitoApo-[ACP]" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="HOR">
+      <species metaid="M_MAM02485m" sboTerm="SBO:0000247" id="M_MAM02485m" name="mitoApo-[ACP]" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="HOR">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02485m">
+            <rdf:Description rdf:about="#M_MAM02485m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:29999"/>
@@ -69164,10 +69200,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02486m" sboTerm="SBO:0000247" id="MAM02486m" name="mitooxidized thioredoxin" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C819H1320N226O239S7">
+      <species metaid="M_MAM02486m" sboTerm="SBO:0000247" id="M_MAM02486m" name="mitooxidized thioredoxin" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C819H1320N226O239S7">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02486m">
+            <rdf:Description rdf:about="#M_MAM02486m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:18191"/>
@@ -69180,10 +69216,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02487c" sboTerm="SBO:0000247" id="MAM02487c" name="mitothioredoxin" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C819H1322N226O239S7">
+      <species metaid="M_MAM02487c" sboTerm="SBO:0000247" id="M_MAM02487c" name="mitothioredoxin" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C819H1322N226O239S7">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02487c">
+            <rdf:Description rdf:about="#M_MAM02487c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:15967"/>
@@ -69196,10 +69232,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02487m" sboTerm="SBO:0000247" id="MAM02487m" name="mitothioredoxin" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C819H1322N226O239S7">
+      <species metaid="M_MAM02487m" sboTerm="SBO:0000247" id="M_MAM02487m" name="mitothioredoxin" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C819H1322N226O239S7">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02487m">
+            <rdf:Description rdf:about="#M_MAM02487m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:15967"/>
@@ -69212,10 +69248,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02488c" sboTerm="SBO:0000247" id="MAM02488c" name="molybdopterin" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C10H12N5O6PS2">
+      <species metaid="M_MAM02488c" sboTerm="SBO:0000247" id="M_MAM02488c" name="molybdopterin" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C10H12N5O6PS2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02488c">
+            <rdf:Description rdf:about="#M_MAM02488c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:44074"/>
@@ -69228,10 +69264,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM02489c" sboTerm="SBO:0000247" id="MAM02489c" name="monodehydroascorbate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H6O6">
+      <species metaid="M_MAM02489c" sboTerm="SBO:0000247" id="M_MAM02489c" name="monodehydroascorbate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H6O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02489c">
+            <rdf:Description rdf:about="#M_MAM02489c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:16504"/>
@@ -69245,10 +69281,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02492c" sboTerm="SBO:0000247" id="MAM02492c" name="myo-inositol-hexakisphosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-12" fbc:chemicalFormula="C6H6O24P6">
+      <species metaid="M_MAM02492c" sboTerm="SBO:0000247" id="M_MAM02492c" name="myo-inositol-hexakisphosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-12" fbc:chemicalFormula="C6H6O24P6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02492c">
+            <rdf:Description rdf:about="#M_MAM02492c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/minohp"/>
@@ -69263,10 +69299,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02492n" sboTerm="SBO:0000247" id="MAM02492n" name="myo-inositol-hexakisphosphate" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-12" fbc:chemicalFormula="C6H6O24P6">
+      <species metaid="M_MAM02492n" sboTerm="SBO:0000247" id="M_MAM02492n" name="myo-inositol-hexakisphosphate" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-12" fbc:chemicalFormula="C6H6O24P6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02492n">
+            <rdf:Description rdf:about="#M_MAM02492n">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/minohp"/>
@@ -69281,10 +69317,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02493c" sboTerm="SBO:0000247" id="MAM02493c" name="myo-inositol-polyphosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="X">
+      <species metaid="M_MAM02493c" sboTerm="SBO:0000247" id="M_MAM02493c" name="myo-inositol-polyphosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="X">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02493c">
+            <rdf:Description rdf:about="#M_MAM02493c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C11525"/>
@@ -69296,10 +69332,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02494c" sboTerm="SBO:0000247" id="MAM02494c" name="myristic acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C14H27O2">
+      <species metaid="M_MAM02494c" sboTerm="SBO:0000247" id="M_MAM02494c" name="myristic acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C14H27O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02494c">
+            <rdf:Description rdf:about="#M_MAM02494c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ttdca"/>
@@ -69317,10 +69353,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02494l" sboTerm="SBO:0000247" id="MAM02494l" name="myristic acid" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C14H27O2">
+      <species metaid="M_MAM02494l" sboTerm="SBO:0000247" id="M_MAM02494l" name="myristic acid" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C14H27O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02494l">
+            <rdf:Description rdf:about="#M_MAM02494l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ttdca"/>
@@ -69338,10 +69374,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02494r" sboTerm="SBO:0000247" id="MAM02494r" name="myristic acid" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C14H27O2">
+      <species metaid="M_MAM02494r" sboTerm="SBO:0000247" id="M_MAM02494r" name="myristic acid" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C14H27O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02494r">
+            <rdf:Description rdf:about="#M_MAM02494r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ttdca"/>
@@ -69359,10 +69395,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02494e" sboTerm="SBO:0000247" id="MAM02494e" name="myristic acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C14H27O2">
+      <species metaid="M_MAM02494e" sboTerm="SBO:0000247" id="M_MAM02494e" name="myristic acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C14H27O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02494e">
+            <rdf:Description rdf:about="#M_MAM02494e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ttdca"/>
@@ -69380,10 +69416,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02495c" sboTerm="SBO:0000247" id="MAM02495c" name="myristoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C35H58N7O17P3S">
+      <species metaid="M_MAM02495c" sboTerm="SBO:0000247" id="M_MAM02495c" name="myristoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C35H58N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02495c">
+            <rdf:Description rdf:about="#M_MAM02495c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/tdcoa"/>
@@ -69400,10 +69436,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02495m" sboTerm="SBO:0000247" id="MAM02495m" name="myristoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C35H58N7O17P3S">
+      <species metaid="M_MAM02495m" sboTerm="SBO:0000247" id="M_MAM02495m" name="myristoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C35H58N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02495m">
+            <rdf:Description rdf:about="#M_MAM02495m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/tdcoa"/>
@@ -69420,10 +69456,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02495x" sboTerm="SBO:0000247" id="MAM02495x" name="myristoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C35H58N7O17P3S">
+      <species metaid="M_MAM02495x" sboTerm="SBO:0000247" id="M_MAM02495x" name="myristoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C35H58N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02495x">
+            <rdf:Description rdf:about="#M_MAM02495x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/tdcoa"/>
@@ -69440,10 +69476,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02495r" sboTerm="SBO:0000247" id="MAM02495r" name="myristoyl-CoA" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C35H58N7O17P3S">
+      <species metaid="M_MAM02495r" sboTerm="SBO:0000247" id="M_MAM02495r" name="myristoyl-CoA" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C35H58N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02495r">
+            <rdf:Description rdf:about="#M_MAM02495r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/tdcoa"/>
@@ -69460,10 +69496,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02496c" sboTerm="SBO:0000247" id="MAM02496c" name="N(omega)-(ADP-D-ribosyl)-L-arginine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C21H34N9O15P2">
+      <species metaid="M_MAM02496c" sboTerm="SBO:0000247" id="M_MAM02496c" name="N(omega)-(ADP-D-ribosyl)-L-arginine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C21H34N9O15P2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02496c">
+            <rdf:Description rdf:about="#M_MAM02496c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:15827"/>
@@ -69476,10 +69512,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02497c" sboTerm="SBO:0000247" id="MAM02497c" name="N-(omega)-hydroxyarginine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C6H15N4O3">
+      <species metaid="M_MAM02497c" sboTerm="SBO:0000247" id="M_MAM02497c" name="N-(omega)-hydroxyarginine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C6H15N4O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02497c">
+            <rdf:Description rdf:about="#M_MAM02497c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/nwharg"/>
@@ -69494,10 +69530,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02498c" sboTerm="SBO:0000247" id="MAM02498c" name="N,N-chitobiosyldiphosphodolichol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C116H190N2O17P2">
+      <species metaid="M_MAM02498c" sboTerm="SBO:0000247" id="M_MAM02498c" name="N,N-chitobiosyldiphosphodolichol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C116H190N2O17P2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02498c">
+            <rdf:Description rdf:about="#M_MAM02498c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/chito2pdol__L"/>
@@ -69511,10 +69547,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02499c" sboTerm="SBO:0000247" id="MAM02499c" name="N,N-dimethyldopaminequinone" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C10H14NO2">
+      <species metaid="M_MAM02499c" sboTerm="SBO:0000247" id="M_MAM02499c" name="N,N-dimethyldopaminequinone" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C10H14NO2">
         <annotation>
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-            <rdf:Description rdf:about="#MAM02499c">
+            <rdf:Description rdf:about="#M_MAM02499c">
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                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM163443"/>
@@ -69525,10 +69561,10 @@
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-      <species metaid="MAM02500c" sboTerm="SBO:0000247" id="MAM02500c" name="N,N-dimethylindoliumolate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C10H12NO2">
+      <species metaid="M_MAM02500c" sboTerm="SBO:0000247" id="M_MAM02500c" name="N,N-dimethylindoliumolate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C10H12NO2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02500c">
+            <rdf:Description rdf:about="#M_MAM02500c">
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                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM158251"/>
@@ -69539,10 +69575,10 @@
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-      <species metaid="MAM02501c" sboTerm="SBO:0000247" id="MAM02501c" name="N1,N12-diacetylspermine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="C14H32N4O2">
+      <species metaid="M_MAM02501c" sboTerm="SBO:0000247" id="M_MAM02501c" name="N1,N12-diacetylspermine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="C14H32N4O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02501c">
+            <rdf:Description rdf:about="#M_MAM02501c">
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                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:28101"/>
@@ -69557,10 +69593,10 @@
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+      <species metaid="M_MAM02501x" sboTerm="SBO:0000247" id="M_MAM02501x" name="N1,N12-diacetylspermine" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="C14H32N4O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02501x">
+            <rdf:Description rdf:about="#M_MAM02501x">
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@@ -69575,10 +69611,10 @@
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-      <species metaid="MAM02502c" sboTerm="SBO:0000247" id="MAM02502c" name="N1,N8-diacetylspermidine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C11H24N3O2">
+      <species metaid="M_MAM02502c" sboTerm="SBO:0000247" id="M_MAM02502c" name="N1,N8-diacetylspermidine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C11H24N3O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02502c">
+            <rdf:Description rdf:about="#M_MAM02502c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM64037"/>
@@ -69590,10 +69626,10 @@
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-      <species metaid="MAM02503c" sboTerm="SBO:0000247" id="MAM02503c" name="N1-acetylspermidine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="C9H23N3O">
+      <species metaid="M_MAM02503c" sboTerm="SBO:0000247" id="M_MAM02503c" name="N1-acetylspermidine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="C9H23N3O">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02503c">
+            <rdf:Description rdf:about="#M_MAM02503c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:17927"/>
@@ -69608,10 +69644,10 @@
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-      <species metaid="MAM02503x" sboTerm="SBO:0000247" id="MAM02503x" name="N1-acetylspermidine" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="C9H23N3O">
+      <species metaid="M_MAM02503x" sboTerm="SBO:0000247" id="M_MAM02503x" name="N1-acetylspermidine" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="C9H23N3O">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02503x">
+            <rdf:Description rdf:about="#M_MAM02503x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:17927"/>
@@ -69626,10 +69662,10 @@
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-      <species metaid="MAM02504c" sboTerm="SBO:0000247" id="MAM02504c" name="N1-acetylspermine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="3" fbc:chemicalFormula="C12H31N4O">
+      <species metaid="M_MAM02504c" sboTerm="SBO:0000247" id="M_MAM02504c" name="N1-acetylspermine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="3" fbc:chemicalFormula="C12H31N4O">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02504c">
+            <rdf:Description rdf:about="#M_MAM02504c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:17312"/>
@@ -69644,10 +69680,10 @@
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-      <species metaid="MAM02504x" sboTerm="SBO:0000247" id="MAM02504x" name="N1-acetylspermine" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="3" fbc:chemicalFormula="C12H31N4O">
+      <species metaid="M_MAM02504x" sboTerm="SBO:0000247" id="M_MAM02504x" name="N1-acetylspermine" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="3" fbc:chemicalFormula="C12H31N4O">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02504x">
+            <rdf:Description rdf:about="#M_MAM02504x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:17312"/>
@@ -69662,10 +69698,10 @@
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         </annotation>
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-      <species metaid="MAM02505c" sboTerm="SBO:0000247" id="MAM02505c" name="N1-methyl-2-pyridone-5-carboxamide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H8N2O2">
+      <species metaid="M_MAM02505c" sboTerm="SBO:0000247" id="M_MAM02505c" name="N1-methyl-2-pyridone-5-carboxamide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H8N2O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02505c">
+            <rdf:Description rdf:about="#M_MAM02505c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C05842"/>
@@ -69677,10 +69713,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM02506c" sboTerm="SBO:0000247" id="MAM02506c" name="N1-methyl-4-pyridone-5-carboxamide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H8N2O2">
+      <species metaid="M_MAM02506c" sboTerm="SBO:0000247" id="M_MAM02506c" name="N1-methyl-4-pyridone-5-carboxamide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H8N2O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02506c">
+            <rdf:Description rdf:about="#M_MAM02506c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C05843"/>
@@ -69692,10 +69728,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM02507g" sboTerm="SBO:0000247" id="MAM02507g" name="n2m2masn" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C50H83N4O35X">
+      <species metaid="M_MAM02507g" sboTerm="SBO:0000247" id="M_MAM02507g" name="n2m2masn" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C50H83N4O35X">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02507g">
+            <rdf:Description rdf:about="#M_MAM02507g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/n2m2masn"/>
@@ -69708,10 +69744,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02508l" sboTerm="SBO:0000247" id="MAM02508l" name="n2m2mn" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C42H71N3O31">
+      <species metaid="M_MAM02508l" sboTerm="SBO:0000247" id="M_MAM02508l" name="n2m2mn" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C42H71N3O31">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02508l">
+            <rdf:Description rdf:about="#M_MAM02508l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/n2m2mn"/>
@@ -69723,10 +69759,10 @@
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         </annotation>
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-      <species metaid="MAM02509l" sboTerm="SBO:0000247" id="MAM02509l" name="n2m2nm" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C58H97N5O41">
+      <species metaid="M_MAM02509l" sboTerm="SBO:0000247" id="M_MAM02509l" name="n2m2nm" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C58H97N5O41">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02509l">
+            <rdf:Description rdf:about="#M_MAM02509l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/n2m2nm"/>
@@ -69738,10 +69774,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM02510g" sboTerm="SBO:0000247" id="MAM02510g" name="n2m2nmasn" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C58H96N5O40X">
+      <species metaid="M_MAM02510g" sboTerm="SBO:0000247" id="M_MAM02510g" name="n2m2nmasn" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C58H96N5O40X">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02510g">
+            <rdf:Description rdf:about="#M_MAM02510g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/n2m2nmasn"/>
@@ -69754,10 +69790,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM02510l" sboTerm="SBO:0000247" id="MAM02510l" name="n2m2nmasn" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C58H96N5O40X">
+      <species metaid="M_MAM02510l" sboTerm="SBO:0000247" id="M_MAM02510l" name="n2m2nmasn" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C58H96N5O40X">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02510l">
+            <rdf:Description rdf:about="#M_MAM02510l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/n2m2nmasn"/>
@@ -69770,10 +69806,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM02510e" sboTerm="SBO:0000247" id="MAM02510e" name="n2m2nmasn" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C58H96N5O40X">
+      <species metaid="M_MAM02510e" sboTerm="SBO:0000247" id="M_MAM02510e" name="n2m2nmasn" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C58H96N5O40X">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02510e">
+            <rdf:Description rdf:about="#M_MAM02510e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/n2m2nmasn"/>
@@ -69786,10 +69822,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02511l" sboTerm="SBO:0000247" id="MAM02511l" name="n2m2nmn" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C50H84N4O36">
+      <species metaid="M_MAM02511l" sboTerm="SBO:0000247" id="M_MAM02511l" name="n2m2nmn" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C50H84N4O36">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02511l">
+            <rdf:Description rdf:about="#M_MAM02511l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/n2m2nmn"/>
@@ -69801,10 +69837,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02512g" sboTerm="SBO:0000247" id="MAM02512g" name="n3m2masn" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C58H96N5O40X">
+      <species metaid="M_MAM02512g" sboTerm="SBO:0000247" id="M_MAM02512g" name="n3m2masn" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C58H96N5O40X">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02512g">
+            <rdf:Description rdf:about="#M_MAM02512g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/n3m2masn"/>
@@ -69816,10 +69852,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02513c" sboTerm="SBO:0000247" id="MAM02513c" name="N4-(acetyl-beta-D-glucosaminyl)asparagine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C12H21N3O8">
+      <species metaid="M_MAM02513c" sboTerm="SBO:0000247" id="M_MAM02513c" name="N4-(acetyl-beta-D-glucosaminyl)asparagine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C12H21N3O8">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02513c">
+            <rdf:Description rdf:about="#M_MAM02513c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:17261"/>
@@ -69832,10 +69868,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02514c" sboTerm="SBO:0000247" id="MAM02514c" name="N4-acetylaminobutanal" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H11NO2">
+      <species metaid="M_MAM02514c" sboTerm="SBO:0000247" id="M_MAM02514c" name="N4-acetylaminobutanal" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H11NO2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02514c">
+            <rdf:Description rdf:about="#M_MAM02514c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/n4abutn"/>
@@ -69852,10 +69888,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02515g" sboTerm="SBO:0000247" id="MAM02515g" name="n4m2masn" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C66H109N6O45X">
+      <species metaid="M_MAM02515g" sboTerm="SBO:0000247" id="M_MAM02515g" name="n4m2masn" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C66H109N6O45X">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02515g">
+            <rdf:Description rdf:about="#M_MAM02515g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/n4m2masn"/>
@@ -69867,10 +69903,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02516c" sboTerm="SBO:0000247" id="MAM02516c" name="n5m2masn" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C74H122N7O50X">
+      <species metaid="M_MAM02516c" sboTerm="SBO:0000247" id="M_MAM02516c" name="n5m2masn" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C74H122N7O50X">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02516c">
+            <rdf:Description rdf:about="#M_MAM02516c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/n5m2masn"/>
@@ -69882,10 +69918,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02516g" sboTerm="SBO:0000247" id="MAM02516g" name="n5m2masn" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C74H122N7O50X">
+      <species metaid="M_MAM02516g" sboTerm="SBO:0000247" id="M_MAM02516g" name="n5m2masn" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C74H122N7O50X">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02516g">
+            <rdf:Description rdf:about="#M_MAM02516g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/n5m2masn"/>
@@ -69897,10 +69933,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02516e" sboTerm="SBO:0000247" id="MAM02516e" name="n5m2masn" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C74H122N7O50X">
+      <species metaid="M_MAM02516e" sboTerm="SBO:0000247" id="M_MAM02516e" name="n5m2masn" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C74H122N7O50X">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02516e">
+            <rdf:Description rdf:about="#M_MAM02516e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/n5m2masn"/>
@@ -69912,10 +69948,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02517c" sboTerm="SBO:0000247" id="MAM02517c" name="N6,N6,N6-trimethyl-L-lysine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H20N2O2">
+      <species metaid="M_MAM02517c" sboTerm="SBO:0000247" id="M_MAM02517c" name="N6,N6,N6-trimethyl-L-lysine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H20N2O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02517c">
+            <rdf:Description rdf:about="#M_MAM02517c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/tmlys"/>
@@ -69932,10 +69968,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02517r" sboTerm="SBO:0000247" id="MAM02517r" name="N6,N6,N6-trimethyl-L-lysine" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H20N2O2">
+      <species metaid="M_MAM02517r" sboTerm="SBO:0000247" id="M_MAM02517r" name="N6,N6,N6-trimethyl-L-lysine" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H20N2O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02517r">
+            <rdf:Description rdf:about="#M_MAM02517r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/tmlys"/>
@@ -69952,10 +69988,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02518c" sboTerm="SBO:0000247" id="MAM02518c" name="N8-acetylspermidine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="C9H23N3O">
+      <species metaid="M_MAM02518c" sboTerm="SBO:0000247" id="M_MAM02518c" name="N8-acetylspermidine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="C9H23N3O">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02518c">
+            <rdf:Description rdf:about="#M_MAM02518c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C01029"/>
@@ -69968,10 +70004,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02519c" sboTerm="SBO:0000247" id="MAM02519c" name="Na+" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="Na">
+      <species metaid="M_MAM02519c" sboTerm="SBO:0000247" id="M_MAM02519c" name="Na+" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="Na">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02519c">
+            <rdf:Description rdf:about="#M_MAM02519c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/na1"/>
@@ -69987,10 +70023,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02519g" sboTerm="SBO:0000247" id="MAM02519g" name="Na+" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="Na">
+      <species metaid="M_MAM02519g" sboTerm="SBO:0000247" id="M_MAM02519g" name="Na+" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="Na">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02519g">
+            <rdf:Description rdf:about="#M_MAM02519g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/na1"/>
@@ -70006,10 +70042,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02519x" sboTerm="SBO:0000247" id="MAM02519x" name="Na+" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="Na">
+      <species metaid="M_MAM02519x" sboTerm="SBO:0000247" id="M_MAM02519x" name="Na+" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="Na">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02519x">
+            <rdf:Description rdf:about="#M_MAM02519x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/na1"/>
@@ -70025,10 +70061,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02519r" sboTerm="SBO:0000247" id="MAM02519r" name="Na+" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="Na">
+      <species metaid="M_MAM02519r" sboTerm="SBO:0000247" id="M_MAM02519r" name="Na+" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="Na">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02519r">
+            <rdf:Description rdf:about="#M_MAM02519r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/na1"/>
@@ -70044,10 +70080,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02519e" sboTerm="SBO:0000247" id="MAM02519e" name="Na+" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="Na">
+      <species metaid="M_MAM02519e" sboTerm="SBO:0000247" id="M_MAM02519e" name="Na+" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="Na">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02519e">
+            <rdf:Description rdf:about="#M_MAM02519e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/na1"/>
@@ -70063,10 +70099,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02520c" sboTerm="SBO:0000247" id="MAM02520c" name="N-acetyl-5-methoxykynuramine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C12H16N2O3">
+      <species metaid="M_MAM02520c" sboTerm="SBO:0000247" id="M_MAM02520c" name="N-acetyl-5-methoxykynuramine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C12H16N2O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02520c">
+            <rdf:Description rdf:about="#M_MAM02520c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM19566"/>
@@ -70078,10 +70114,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02521c" sboTerm="SBO:0000247" id="MAM02521c" name="N-acetyl-beta-D-glucosaminylamine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H16N2O5">
+      <species metaid="M_MAM02521c" sboTerm="SBO:0000247" id="M_MAM02521c" name="N-acetyl-beta-D-glucosaminylamine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H16N2O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02521c">
+            <rdf:Description rdf:about="#M_MAM02521c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:15947"/>
@@ -70094,10 +70130,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02522c" sboTerm="SBO:0000247" id="MAM02522c" name="N-acetyl-D-glucosaminyldiphosphodolichol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C108H177NO12P2">
+      <species metaid="M_MAM02522c" sboTerm="SBO:0000247" id="M_MAM02522c" name="N-acetyl-D-glucosaminyldiphosphodolichol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C108H177NO12P2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02522c">
+            <rdf:Description rdf:about="#M_MAM02522c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/naglc2p__L"/>
@@ -70111,10 +70147,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02523c" sboTerm="SBO:0000247" id="MAM02523c" name="N-acetyl-D-glucosaminylphosphatidylinositol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C19H29NO18PR2">
+      <species metaid="M_MAM02523c" sboTerm="SBO:0000247" id="M_MAM02523c" name="N-acetyl-D-glucosaminylphosphatidylinositol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C19H29NO18PR2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02523c">
+            <rdf:Description rdf:about="#M_MAM02523c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/acgpail_hs"/>
@@ -70128,10 +70164,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02523r" sboTerm="SBO:0000247" id="MAM02523r" name="N-acetyl-D-glucosaminylphosphatidylinositol" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C19H29NO18PR2">
+      <species metaid="M_MAM02523r" sboTerm="SBO:0000247" id="M_MAM02523r" name="N-acetyl-D-glucosaminylphosphatidylinositol" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C19H29NO18PR2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02523r">
+            <rdf:Description rdf:about="#M_MAM02523r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/acgpail_hs"/>
@@ -70145,10 +70181,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02524r" sboTerm="SBO:0000247" id="MAM02524r" name="N-acetyl-D-mannosamine" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H15NO6">
+      <species metaid="M_MAM02524r" sboTerm="SBO:0000247" id="M_MAM02524r" name="N-acetyl-D-mannosamine" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H15NO6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02524r">
+            <rdf:Description rdf:about="#M_MAM02524r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/acmana"/>
@@ -70163,10 +70199,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02524e" sboTerm="SBO:0000247" id="MAM02524e" name="N-acetyl-D-mannosamine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H15NO6">
+      <species metaid="M_MAM02524e" sboTerm="SBO:0000247" id="M_MAM02524e" name="N-acetyl-D-mannosamine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H15NO6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02524e">
+            <rdf:Description rdf:about="#M_MAM02524e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/acmana"/>
@@ -70181,10 +70217,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02525c" sboTerm="SBO:0000247" id="MAM02525c" name="N-acetylgalactosamine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H15NO6">
+      <species metaid="M_MAM02525c" sboTerm="SBO:0000247" id="M_MAM02525c" name="N-acetylgalactosamine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H15NO6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02525c">
+            <rdf:Description rdf:about="#M_MAM02525c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/acgal"/>
@@ -70200,10 +70236,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02525g" sboTerm="SBO:0000247" id="MAM02525g" name="N-acetylgalactosamine" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H15NO6">
+      <species metaid="M_MAM02525g" sboTerm="SBO:0000247" id="M_MAM02525g" name="N-acetylgalactosamine" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H15NO6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02525g">
+            <rdf:Description rdf:about="#M_MAM02525g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/acgal"/>
@@ -70219,10 +70255,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02525l" sboTerm="SBO:0000247" id="MAM02525l" name="N-acetylgalactosamine" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H15NO6">
+      <species metaid="M_MAM02525l" sboTerm="SBO:0000247" id="M_MAM02525l" name="N-acetylgalactosamine" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H15NO6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02525l">
+            <rdf:Description rdf:about="#M_MAM02525l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/acgal"/>
@@ -70238,10 +70274,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02526c" sboTerm="SBO:0000247" id="MAM02526c" name="N-acetylgalactosamine-1-phosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C8H14NO9P">
+      <species metaid="M_MAM02526c" sboTerm="SBO:0000247" id="M_MAM02526c" name="N-acetylgalactosamine-1-phosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C8H14NO9P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02526c">
+            <rdf:Description rdf:about="#M_MAM02526c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/acgal1p"/>
@@ -70256,10 +70292,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02527c" sboTerm="SBO:0000247" id="MAM02527c" name="N-acetylglucosamine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H15NO6">
+      <species metaid="M_MAM02527c" sboTerm="SBO:0000247" id="M_MAM02527c" name="N-acetylglucosamine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H15NO6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02527c">
+            <rdf:Description rdf:about="#M_MAM02527c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/acgam"/>
@@ -70275,10 +70311,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02527l" sboTerm="SBO:0000247" id="MAM02527l" name="N-acetylglucosamine" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H15NO6">
+      <species metaid="M_MAM02527l" sboTerm="SBO:0000247" id="M_MAM02527l" name="N-acetylglucosamine" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H15NO6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02527l">
+            <rdf:Description rdf:about="#M_MAM02527l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/acgam"/>
@@ -70294,10 +70330,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02527r" sboTerm="SBO:0000247" id="MAM02527r" name="N-acetylglucosamine" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H15NO6">
+      <species metaid="M_MAM02527r" sboTerm="SBO:0000247" id="M_MAM02527r" name="N-acetylglucosamine" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H15NO6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02527r">
+            <rdf:Description rdf:about="#M_MAM02527r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/acgam"/>
@@ -70313,10 +70349,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02527e" sboTerm="SBO:0000247" id="MAM02527e" name="N-acetylglucosamine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H15NO6">
+      <species metaid="M_MAM02527e" sboTerm="SBO:0000247" id="M_MAM02527e" name="N-acetylglucosamine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H15NO6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02527e">
+            <rdf:Description rdf:about="#M_MAM02527e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/acgam"/>
@@ -70332,10 +70368,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02528c" sboTerm="SBO:0000247" id="MAM02528c" name="N-acetylglucosamine-1-phosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C8H14NO9P">
+      <species metaid="M_MAM02528c" sboTerm="SBO:0000247" id="M_MAM02528c" name="N-acetylglucosamine-1-phosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C8H14NO9P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02528c">
+            <rdf:Description rdf:about="#M_MAM02528c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/acgam1p"/>
@@ -70350,10 +70386,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02529c" sboTerm="SBO:0000247" id="MAM02529c" name="N-acetylglucosamine-6-phosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C8H14NO9P">
+      <species metaid="M_MAM02529c" sboTerm="SBO:0000247" id="M_MAM02529c" name="N-acetylglucosamine-6-phosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C8H14NO9P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02529c">
+            <rdf:Description rdf:about="#M_MAM02529c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/acgam6p"/>
@@ -70368,10 +70404,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02530c" sboTerm="SBO:0000247" id="MAM02530c" name="N-acetyl-L-alanine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C5H8NO3">
+      <species metaid="M_MAM02530c" sboTerm="SBO:0000247" id="M_MAM02530c" name="N-acetyl-L-alanine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C5H8NO3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02530c">
+            <rdf:Description rdf:about="#M_MAM02530c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM19630"/>
@@ -70383,10 +70419,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02531c" sboTerm="SBO:0000247" id="MAM02531c" name="N-acetyl-L-asparagine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H9N2O4">
+      <species metaid="M_MAM02531c" sboTerm="SBO:0000247" id="M_MAM02531c" name="N-acetyl-L-asparagine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H9N2O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02531c">
+            <rdf:Description rdf:about="#M_MAM02531c">
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                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM163469"/>
@@ -70398,10 +70434,10 @@
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-      <species metaid="MAM02532c" sboTerm="SBO:0000247" id="MAM02532c" name="N-acetyl-L-aspartate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H7NO5">
+      <species metaid="M_MAM02532c" sboTerm="SBO:0000247" id="M_MAM02532c" name="N-acetyl-L-aspartate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H7NO5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02532c">
+            <rdf:Description rdf:about="#M_MAM02532c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/Nacasp"/>
@@ -70417,10 +70453,10 @@
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-      <species metaid="MAM02532m" sboTerm="SBO:0000247" id="MAM02532m" name="N-acetyl-L-aspartate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H7NO5">
+      <species metaid="M_MAM02532m" sboTerm="SBO:0000247" id="M_MAM02532m" name="N-acetyl-L-aspartate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H7NO5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02532m">
+            <rdf:Description rdf:about="#M_MAM02532m">
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                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/Nacasp"/>
@@ -70436,10 +70472,10 @@
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-      <species metaid="MAM02534m" sboTerm="SBO:0000247" id="MAM02534m" name="N-acetyl-L-cysteine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C5H8NO3S">
+      <species metaid="M_MAM02534m" sboTerm="SBO:0000247" id="M_MAM02534m" name="N-acetyl-L-cysteine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C5H8NO3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02534m">
+            <rdf:Description rdf:about="#M_MAM02534m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM98606"/>
@@ -70451,10 +70487,10 @@
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-      <species metaid="MAM02535m" sboTerm="SBO:0000247" id="MAM02535m" name="N-acetyl-L-glutamate 5-semialdehyde" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C7H10NO4">
+      <species metaid="M_MAM02535m" sboTerm="SBO:0000247" id="M_MAM02535m" name="N-acetyl-L-glutamate 5-semialdehyde" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C7H10NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02535m">
+            <rdf:Description rdf:about="#M_MAM02535m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/acg5sa"/>
@@ -70470,10 +70506,10 @@
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-      <species metaid="MAM02536m" sboTerm="SBO:0000247" id="MAM02536m" name="N-acetyl-L-glutamate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C7H9NO5">
+      <species metaid="M_MAM02536m" sboTerm="SBO:0000247" id="M_MAM02536m" name="N-acetyl-L-glutamate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C7H9NO5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02536m">
+            <rdf:Description rdf:about="#M_MAM02536m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/acglu"/>
@@ -70489,10 +70525,10 @@
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         </annotation>
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-      <species metaid="MAM02537m" sboTerm="SBO:0000247" id="MAM02537m" name="N-acetyl-L-glutamate-5-phosphate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C7H9NO8P">
+      <species metaid="M_MAM02537m" sboTerm="SBO:0000247" id="M_MAM02537m" name="N-acetyl-L-glutamate-5-phosphate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C7H9NO8P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02537m">
+            <rdf:Description rdf:about="#M_MAM02537m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/acg5p"/>
@@ -70508,10 +70544,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM02538c" sboTerm="SBO:0000247" id="MAM02538c" name="N-acetyl-LTE4" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C25H37NO6S">
+      <species metaid="M_MAM02538c" sboTerm="SBO:0000247" id="M_MAM02538c" name="N-acetyl-LTE4" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C25H37NO6S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02538c">
+            <rdf:Description rdf:about="#M_MAM02538c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM63564"/>
@@ -70523,10 +70559,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM02538n" sboTerm="SBO:0000247" id="MAM02538n" name="N-acetyl-LTE4" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C25H37NO6S">
+      <species metaid="M_MAM02538n" sboTerm="SBO:0000247" id="M_MAM02538n" name="N-acetyl-LTE4" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C25H37NO6S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02538n">
+            <rdf:Description rdf:about="#M_MAM02538n">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM63564"/>
@@ -70538,10 +70574,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM02539c" sboTerm="SBO:0000247" id="MAM02539c" name="N-acetylmannosamine-6-phosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C8H14NO9P">
+      <species metaid="M_MAM02539c" sboTerm="SBO:0000247" id="M_MAM02539c" name="N-acetylmannosamine-6-phosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C8H14NO9P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02539c">
+            <rdf:Description rdf:about="#M_MAM02539c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/acmanap"/>
@@ -70556,10 +70592,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02540c" sboTerm="SBO:0000247" id="MAM02540c" name="N-acetylmethionine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C7H12NO3S">
+      <species metaid="M_MAM02540c" sboTerm="SBO:0000247" id="M_MAM02540c" name="N-acetylmethionine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C7H12NO3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02540c">
+            <rdf:Description rdf:about="#M_MAM02540c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:165927"/>
@@ -70574,10 +70610,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02540m" sboTerm="SBO:0000247" id="MAM02540m" name="N-acetylmethionine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C7H12NO3S">
+      <species metaid="M_MAM02540m" sboTerm="SBO:0000247" id="M_MAM02540m" name="N-acetylmethionine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C7H12NO3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02540m">
+            <rdf:Description rdf:about="#M_MAM02540m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:165927"/>
@@ -70592,10 +70628,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02541c" sboTerm="SBO:0000247" id="MAM02541c" name="N-acetylmuramate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C11H18NO8">
+      <species metaid="M_MAM02541c" sboTerm="SBO:0000247" id="M_MAM02541c" name="N-acetylmuramate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C11H18NO8">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02541c">
+            <rdf:Description rdf:about="#M_MAM02541c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:21615"/>
@@ -70608,10 +70644,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM02542c" sboTerm="SBO:0000247" id="MAM02542c" name="N-acetylmuramoyl-ala" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C14H23N2O9">
+      <species metaid="M_MAM02542c" sboTerm="SBO:0000247" id="M_MAM02542c" name="N-acetylmuramoyl-ala" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C14H23N2O9">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02542c">
+            <rdf:Description rdf:about="#M_MAM02542c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:28920"/>
@@ -70625,10 +70661,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02543c" sboTerm="SBO:0000247" id="MAM02543c" name="N-acetylneuraminate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C11H18NO9">
+      <species metaid="M_MAM02543c" sboTerm="SBO:0000247" id="M_MAM02543c" name="N-acetylneuraminate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C11H18NO9">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02543c">
+            <rdf:Description rdf:about="#M_MAM02543c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/acnam"/>
@@ -70644,10 +70680,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02543l" sboTerm="SBO:0000247" id="MAM02543l" name="N-acetylneuraminate" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C11H18NO9">
+      <species metaid="M_MAM02543l" sboTerm="SBO:0000247" id="M_MAM02543l" name="N-acetylneuraminate" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C11H18NO9">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02543l">
+            <rdf:Description rdf:about="#M_MAM02543l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/acnam"/>
@@ -70663,10 +70699,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02543n" sboTerm="SBO:0000247" id="MAM02543n" name="N-acetylneuraminate" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C11H18NO9">
+      <species metaid="M_MAM02543n" sboTerm="SBO:0000247" id="M_MAM02543n" name="N-acetylneuraminate" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C11H18NO9">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02543n">
+            <rdf:Description rdf:about="#M_MAM02543n">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/acnam"/>
@@ -70682,10 +70718,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02544c" sboTerm="SBO:0000247" id="MAM02544c" name="N-acetylneuraminate-9-phosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C11H17NO12P">
+      <species metaid="M_MAM02544c" sboTerm="SBO:0000247" id="M_MAM02544c" name="N-acetylneuraminate-9-phosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C11H17NO12P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02544c">
+            <rdf:Description rdf:about="#M_MAM02544c">
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                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/acnamp"/>
@@ -70701,10 +70737,10 @@
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-      <species metaid="MAM02546c" sboTerm="SBO:0000247" id="MAM02546c" name="N-acetylornithine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H14N2O3">
+      <species metaid="M_MAM02546c" sboTerm="SBO:0000247" id="M_MAM02546c" name="N-acetylornithine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H14N2O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02546c">
+            <rdf:Description rdf:about="#M_MAM02546c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/acorn"/>
@@ -70721,10 +70757,10 @@
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-      <species metaid="MAM02547c" sboTerm="SBO:0000247" id="MAM02547c" name="N-acetylputrescine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C6H15N2O">
+      <species metaid="M_MAM02547c" sboTerm="SBO:0000247" id="M_MAM02547c" name="N-acetylputrescine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C6H15N2O">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02547c">
+            <rdf:Description rdf:about="#M_MAM02547c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/aprut"/>
@@ -70740,10 +70776,10 @@
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-      <species metaid="MAM02548c" sboTerm="SBO:0000247" id="MAM02548c" name="N-acetyl-S-[2-carboxy-1-(1H-imidazol-4-yl)ethyl]-L-cysteine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C11H13N3O5S">
+      <species metaid="M_MAM02548c" sboTerm="SBO:0000247" id="M_MAM02548c" name="N-acetyl-S-[2-carboxy-1-(1H-imidazol-4-yl)ethyl]-L-cysteine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C11H13N3O5S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02548c">
+            <rdf:Description rdf:about="#M_MAM02548c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM168488"/>
@@ -70754,10 +70790,10 @@
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         </annotation>
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-      <species metaid="MAM02550c" sboTerm="SBO:0000247" id="MAM02550c" name="N-acetyl-seryl-aspartate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C9H12N2O7">
+      <species metaid="M_MAM02550c" sboTerm="SBO:0000247" id="M_MAM02550c" name="N-acetyl-seryl-aspartate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C9H12N2O7">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02550c">
+            <rdf:Description rdf:about="#M_MAM02550c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM42"/>
@@ -70768,10 +70804,10 @@
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-      <species metaid="MAM02551c" sboTerm="SBO:0000247" id="MAM02551c" name="N-acetyl-seryl-aspartyl-lysyl-proline" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H32N5O9">
+      <species metaid="M_MAM02551c" sboTerm="SBO:0000247" id="M_MAM02551c" name="N-acetyl-seryl-aspartyl-lysyl-proline" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H32N5O9">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02551c">
+            <rdf:Description rdf:about="#M_MAM02551c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM163855"/>
@@ -70783,10 +70819,10 @@
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         </annotation>
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-      <species metaid="MAM02552c" sboTerm="SBO:0000247" id="MAM02552c" name="NAD+" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C21H26N7O14P2">
+      <species metaid="M_MAM02552c" sboTerm="SBO:0000247" id="M_MAM02552c" name="NAD+" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C21H26N7O14P2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02552c">
+            <rdf:Description rdf:about="#M_MAM02552c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/nad"/>
@@ -70802,10 +70838,10 @@
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+      <species metaid="M_MAM02552m" sboTerm="SBO:0000247" id="M_MAM02552m" name="NAD+" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C21H26N7O14P2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02552m">
+            <rdf:Description rdf:about="#M_MAM02552m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/nad"/>
@@ -70821,10 +70857,10 @@
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+      <species metaid="M_MAM02552n" sboTerm="SBO:0000247" id="M_MAM02552n" name="NAD+" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C21H26N7O14P2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02552n">
+            <rdf:Description rdf:about="#M_MAM02552n">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/nad"/>
@@ -70840,10 +70876,10 @@
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         </annotation>
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+      <species metaid="M_MAM02552x" sboTerm="SBO:0000247" id="M_MAM02552x" name="NAD+" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C21H26N7O14P2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02552x">
+            <rdf:Description rdf:about="#M_MAM02552x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/nad"/>
@@ -70859,10 +70895,10 @@
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         </annotation>
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-      <species metaid="MAM02552r" sboTerm="SBO:0000247" id="MAM02552r" name="NAD+" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C21H26N7O14P2">
+      <species metaid="M_MAM02552r" sboTerm="SBO:0000247" id="M_MAM02552r" name="NAD+" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C21H26N7O14P2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02552r">
+            <rdf:Description rdf:about="#M_MAM02552r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/nad"/>
@@ -70878,10 +70914,10 @@
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         </annotation>
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-      <species metaid="MAM02552e" sboTerm="SBO:0000247" id="MAM02552e" name="NAD+" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C21H26N7O14P2">
+      <species metaid="M_MAM02552e" sboTerm="SBO:0000247" id="M_MAM02552e" name="NAD+" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C21H26N7O14P2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02552e">
+            <rdf:Description rdf:about="#M_MAM02552e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/nad"/>
@@ -70897,10 +70933,10 @@
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         </annotation>
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-      <species metaid="MAM02553c" sboTerm="SBO:0000247" id="MAM02553c" name="NADH" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C21H27N7O14P2">
+      <species metaid="M_MAM02553c" sboTerm="SBO:0000247" id="M_MAM02553c" name="NADH" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C21H27N7O14P2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02553c">
+            <rdf:Description rdf:about="#M_MAM02553c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/nadh"/>
@@ -70916,10 +70952,10 @@
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         </annotation>
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-      <species metaid="MAM02553m" sboTerm="SBO:0000247" id="MAM02553m" name="NADH" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C21H27N7O14P2">
+      <species metaid="M_MAM02553m" sboTerm="SBO:0000247" id="M_MAM02553m" name="NADH" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C21H27N7O14P2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02553m">
+            <rdf:Description rdf:about="#M_MAM02553m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/nadh"/>
@@ -70935,10 +70971,10 @@
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         </annotation>
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-      <species metaid="MAM02553x" sboTerm="SBO:0000247" id="MAM02553x" name="NADH" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C21H27N7O14P2">
+      <species metaid="M_MAM02553x" sboTerm="SBO:0000247" id="M_MAM02553x" name="NADH" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C21H27N7O14P2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02553x">
+            <rdf:Description rdf:about="#M_MAM02553x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/nadh"/>
@@ -70954,10 +70990,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM02553r" sboTerm="SBO:0000247" id="MAM02553r" name="NADH" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C21H27N7O14P2">
+      <species metaid="M_MAM02553r" sboTerm="SBO:0000247" id="M_MAM02553r" name="NADH" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C21H27N7O14P2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02553r">
+            <rdf:Description rdf:about="#M_MAM02553r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/nadh"/>
@@ -70973,10 +71009,10 @@
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         </annotation>
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-      <species metaid="MAM02553e" sboTerm="SBO:0000247" id="MAM02553e" name="NADH" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C21H27N7O14P2">
+      <species metaid="M_MAM02553e" sboTerm="SBO:0000247" id="M_MAM02553e" name="NADH" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C21H27N7O14P2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02553e">
+            <rdf:Description rdf:about="#M_MAM02553e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/nadh"/>
@@ -70992,10 +71028,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM02554c" sboTerm="SBO:0000247" id="MAM02554c" name="NADP+" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C21H25N7O17P3">
+      <species metaid="M_MAM02554c" sboTerm="SBO:0000247" id="M_MAM02554c" name="NADP+" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C21H25N7O17P3">
         <annotation>
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-            <rdf:Description rdf:about="#MAM02554c">
+            <rdf:Description rdf:about="#M_MAM02554c">
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@@ -71011,10 +71047,10 @@
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+      <species metaid="M_MAM02554l" sboTerm="SBO:0000247" id="M_MAM02554l" name="NADP+" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C21H25N7O17P3">
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           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02554l">
+            <rdf:Description rdf:about="#M_MAM02554l">
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@@ -71030,10 +71066,10 @@
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+      <species metaid="M_MAM02554m" sboTerm="SBO:0000247" id="M_MAM02554m" name="NADP+" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C21H25N7O17P3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02554m">
+            <rdf:Description rdf:about="#M_MAM02554m">
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                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/nadp"/>
@@ -71049,10 +71085,10 @@
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+      <species metaid="M_MAM02554n" sboTerm="SBO:0000247" id="M_MAM02554n" name="NADP+" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C21H25N7O17P3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02554n">
+            <rdf:Description rdf:about="#M_MAM02554n">
               <bqbiol:is>
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                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/nadp"/>
@@ -71068,10 +71104,10 @@
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-      <species metaid="MAM02554x" sboTerm="SBO:0000247" id="MAM02554x" name="NADP+" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C21H25N7O17P3">
+      <species metaid="M_MAM02554x" sboTerm="SBO:0000247" id="M_MAM02554x" name="NADP+" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C21H25N7O17P3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02554x">
+            <rdf:Description rdf:about="#M_MAM02554x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/nadp"/>
@@ -71087,10 +71123,10 @@
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-      <species metaid="MAM02554r" sboTerm="SBO:0000247" id="MAM02554r" name="NADP+" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C21H25N7O17P3">
+      <species metaid="M_MAM02554r" sboTerm="SBO:0000247" id="M_MAM02554r" name="NADP+" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C21H25N7O17P3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02554r">
+            <rdf:Description rdf:about="#M_MAM02554r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/nadp"/>
@@ -71106,10 +71142,10 @@
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-      <species metaid="MAM02554e" sboTerm="SBO:0000247" id="MAM02554e" name="NADP+" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C21H25N7O17P3">
+      <species metaid="M_MAM02554e" sboTerm="SBO:0000247" id="M_MAM02554e" name="NADP+" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C21H25N7O17P3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02554e">
+            <rdf:Description rdf:about="#M_MAM02554e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/nadp"/>
@@ -71125,10 +71161,10 @@
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-      <species metaid="MAM02555c" sboTerm="SBO:0000247" id="MAM02555c" name="NADPH" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C21H26N7O17P3">
+      <species metaid="M_MAM02555c" sboTerm="SBO:0000247" id="M_MAM02555c" name="NADPH" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C21H26N7O17P3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02555c">
+            <rdf:Description rdf:about="#M_MAM02555c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/nadph"/>
@@ -71144,10 +71180,10 @@
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-      <species metaid="MAM02555l" sboTerm="SBO:0000247" id="MAM02555l" name="NADPH" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C21H26N7O17P3">
+      <species metaid="M_MAM02555l" sboTerm="SBO:0000247" id="M_MAM02555l" name="NADPH" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C21H26N7O17P3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02555l">
+            <rdf:Description rdf:about="#M_MAM02555l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/nadph"/>
@@ -71163,10 +71199,10 @@
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-      <species metaid="MAM02555m" sboTerm="SBO:0000247" id="MAM02555m" name="NADPH" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C21H26N7O17P3">
+      <species metaid="M_MAM02555m" sboTerm="SBO:0000247" id="M_MAM02555m" name="NADPH" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C21H26N7O17P3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02555m">
+            <rdf:Description rdf:about="#M_MAM02555m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/nadph"/>
@@ -71182,10 +71218,10 @@
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-      <species metaid="MAM02555n" sboTerm="SBO:0000247" id="MAM02555n" name="NADPH" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C21H26N7O17P3">
+      <species metaid="M_MAM02555n" sboTerm="SBO:0000247" id="M_MAM02555n" name="NADPH" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C21H26N7O17P3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02555n">
+            <rdf:Description rdf:about="#M_MAM02555n">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/nadph"/>
@@ -71201,10 +71237,10 @@
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-      <species metaid="MAM02555x" sboTerm="SBO:0000247" id="MAM02555x" name="NADPH" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C21H26N7O17P3">
+      <species metaid="M_MAM02555x" sboTerm="SBO:0000247" id="M_MAM02555x" name="NADPH" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C21H26N7O17P3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02555x">
+            <rdf:Description rdf:about="#M_MAM02555x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/nadph"/>
@@ -71220,10 +71256,10 @@
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-      <species metaid="MAM02555r" sboTerm="SBO:0000247" id="MAM02555r" name="NADPH" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C21H26N7O17P3">
+      <species metaid="M_MAM02555r" sboTerm="SBO:0000247" id="M_MAM02555r" name="NADPH" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C21H26N7O17P3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02555r">
+            <rdf:Description rdf:about="#M_MAM02555r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/nadph"/>
@@ -71239,10 +71275,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM02556c" sboTerm="SBO:0000247" id="MAM02556c" name="naphthalene" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H8">
+      <species metaid="M_MAM02556c" sboTerm="SBO:0000247" id="M_MAM02556c" name="naphthalene" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H8">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02556c">
+            <rdf:Description rdf:about="#M_MAM02556c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/npthl"/>
@@ -71258,10 +71294,10 @@
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-      <species metaid="MAM02556e" sboTerm="SBO:0000247" id="MAM02556e" name="naphthalene" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H8">
+      <species metaid="M_MAM02556e" sboTerm="SBO:0000247" id="M_MAM02556e" name="naphthalene" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H8">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02556e">
+            <rdf:Description rdf:about="#M_MAM02556e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/npthl"/>
@@ -71277,10 +71313,10 @@
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-      <species metaid="MAM02557c" sboTerm="SBO:0000247" id="MAM02557c" name="naphthalene-1,2-diol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H8O2">
+      <species metaid="M_MAM02557c" sboTerm="SBO:0000247" id="M_MAM02557c" name="naphthalene-1,2-diol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H8O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02557c">
+            <rdf:Description rdf:about="#M_MAM02557c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:17435"/>
@@ -71293,10 +71329,10 @@
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-      <species metaid="MAM02558m" sboTerm="SBO:0000247" id="MAM02558m" name="N-arachidonoylglycine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C22H34NO3">
+      <species metaid="M_MAM02558m" sboTerm="SBO:0000247" id="M_MAM02558m" name="N-arachidonoylglycine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C22H34NO3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02558m">
+            <rdf:Description rdf:about="#M_MAM02558m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM63653"/>
@@ -71308,10 +71344,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM02559c" sboTerm="SBO:0000247" id="MAM02559c" name="N-carbamoyl-L-aspartate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C5H6N2O5">
+      <species metaid="M_MAM02559c" sboTerm="SBO:0000247" id="M_MAM02559c" name="N-carbamoyl-L-aspartate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C5H6N2O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02559c">
+            <rdf:Description rdf:about="#M_MAM02559c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/cbasp"/>
@@ -71326,10 +71362,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02560e" sboTerm="SBO:0000247" id="MAM02560e" name="NEFA blood pool in" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="CHO2R">
+      <species metaid="M_MAM02560e" sboTerm="SBO:0000247" id="M_MAM02560e" name="NEFA blood pool in" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="CHO2R">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02560e">
+            <rdf:Description rdf:about="#M_MAM02560e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M02560"/>
@@ -71339,10 +71375,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02561e" sboTerm="SBO:0000247" id="MAM02561e" name="NEFA blood pool out" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="CHO2R">
+      <species metaid="M_MAM02561e" sboTerm="SBO:0000247" id="M_MAM02561e" name="NEFA blood pool out" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="CHO2R">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02561e">
+            <rdf:Description rdf:about="#M_MAM02561e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M02561"/>
@@ -71352,10 +71388,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02562c" sboTerm="SBO:0000247" id="MAM02562c" name="neocasomorphin (1-5)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C29H40N5O9">
+      <species metaid="M_MAM02562c" sboTerm="SBO:0000247" id="M_MAM02562c" name="neocasomorphin (1-5)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C29H40N5O9">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02562c">
+            <rdf:Description rdf:about="#M_MAM02562c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM158696"/>
@@ -71366,10 +71402,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02563c" sboTerm="SBO:0000247" id="MAM02563c" name="neocasomorphin" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C35H51N6O10">
+      <species metaid="M_MAM02563c" sboTerm="SBO:0000247" id="M_MAM02563c" name="neocasomorphin" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C35H51N6O10">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02563c">
+            <rdf:Description rdf:about="#M_MAM02563c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM158695"/>
@@ -71380,10 +71416,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02564c" sboTerm="SBO:0000247" id="MAM02564c" name="nervonic acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H45O2">
+      <species metaid="M_MAM02564c" sboTerm="SBO:0000247" id="M_MAM02564c" name="nervonic acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H45O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02564c">
+            <rdf:Description rdf:about="#M_MAM02564c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/nrvnc"/>
@@ -71401,10 +71437,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02564l" sboTerm="SBO:0000247" id="MAM02564l" name="nervonic acid" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H45O2">
+      <species metaid="M_MAM02564l" sboTerm="SBO:0000247" id="M_MAM02564l" name="nervonic acid" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H45O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02564l">
+            <rdf:Description rdf:about="#M_MAM02564l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/nrvnc"/>
@@ -71422,10 +71458,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02564r" sboTerm="SBO:0000247" id="MAM02564r" name="nervonic acid" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H45O2">
+      <species metaid="M_MAM02564r" sboTerm="SBO:0000247" id="M_MAM02564r" name="nervonic acid" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H45O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02564r">
+            <rdf:Description rdf:about="#M_MAM02564r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/nrvnc"/>
@@ -71443,10 +71479,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02564e" sboTerm="SBO:0000247" id="MAM02564e" name="nervonic acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H45O2">
+      <species metaid="M_MAM02564e" sboTerm="SBO:0000247" id="M_MAM02564e" name="nervonic acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H45O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02564e">
+            <rdf:Description rdf:about="#M_MAM02564e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/nrvnc"/>
@@ -71464,10 +71500,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02565c" sboTerm="SBO:0000247" id="MAM02565c" name="neungc" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C11H18NO10">
+      <species metaid="M_MAM02565c" sboTerm="SBO:0000247" id="M_MAM02565c" name="neungc" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C11H18NO10">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02565c">
+            <rdf:Description rdf:about="#M_MAM02565c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:29025"/>
@@ -71481,10 +71517,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02569c" sboTerm="SBO:0000247" id="MAM02569c" name="neuromedin N(1-4)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C26H40N4O6">
+      <species metaid="M_MAM02569c" sboTerm="SBO:0000247" id="M_MAM02569c" name="neuromedin N(1-4)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C26H40N4O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02569c">
+            <rdf:Description rdf:about="#M_MAM02569c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM64500"/>
@@ -71497,10 +71533,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02570c" sboTerm="SBO:0000247" id="MAM02570c" name="neuromedin N" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C32H51N5O7">
+      <species metaid="M_MAM02570c" sboTerm="SBO:0000247" id="M_MAM02570c" name="neuromedin N" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C32H51N5O7">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02570c">
+            <rdf:Description rdf:about="#M_MAM02570c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM64499"/>
@@ -71513,10 +71549,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02574c" sboTerm="SBO:0000247" id="MAM02574c" name="N-formimino-L-glutamate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H8N2O4">
+      <species metaid="M_MAM02574c" sboTerm="SBO:0000247" id="M_MAM02574c" name="N-formimino-L-glutamate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H8N2O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02574c">
+            <rdf:Description rdf:about="#M_MAM02574c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/forglu"/>
@@ -71532,10 +71568,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02575c" sboTerm="SBO:0000247" id="MAM02575c" name="N-formyl-GAR" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C8H13N2O9P">
+      <species metaid="M_MAM02575c" sboTerm="SBO:0000247" id="M_MAM02575c" name="N-formyl-GAR" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C8H13N2O9P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02575c">
+            <rdf:Description rdf:about="#M_MAM02575c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/fgam"/>
@@ -71550,10 +71586,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02576c" sboTerm="SBO:0000247" id="MAM02576c" name="N-formylmethionyl-tRNA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C6H11NO2SR">
+      <species metaid="M_MAM02576c" sboTerm="SBO:0000247" id="M_MAM02576c" name="N-formylmethionyl-tRNA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C6H11NO2SR">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02576c">
+            <rdf:Description rdf:about="#M_MAM02576c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:17119"/>
@@ -71566,10 +71602,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02577c" sboTerm="SBO:0000247" id="MAM02577c" name="NG,NG-dimethyl-L-arginine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C8H19N4O2">
+      <species metaid="M_MAM02577c" sboTerm="SBO:0000247" id="M_MAM02577c" name="NG,NG-dimethyl-L-arginine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C8H19N4O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02577c">
+            <rdf:Description rdf:about="#M_MAM02577c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:17929"/>
@@ -71582,10 +71618,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02578c" sboTerm="SBO:0000247" id="MAM02578c" name="NH3" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="H3N">
+      <species metaid="M_MAM02578c" sboTerm="SBO:0000247" id="M_MAM02578c" name="NH3" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="H3N">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02578c">
+            <rdf:Description rdf:about="#M_MAM02578c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:16134"/>
@@ -71596,10 +71632,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02578m" sboTerm="SBO:0000247" id="MAM02578m" name="NH3" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="H3N">
+      <species metaid="M_MAM02578m" sboTerm="SBO:0000247" id="M_MAM02578m" name="NH3" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="H3N">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02578m">
+            <rdf:Description rdf:about="#M_MAM02578m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:16134"/>
@@ -71610,10 +71646,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02578n" sboTerm="SBO:0000247" id="MAM02578n" name="NH3" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="H3N">
+      <species metaid="M_MAM02578n" sboTerm="SBO:0000247" id="M_MAM02578n" name="NH3" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="H3N">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02578n">
+            <rdf:Description rdf:about="#M_MAM02578n">
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@@ -71624,10 +71660,10 @@
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-      <species metaid="MAM02578x" sboTerm="SBO:0000247" id="MAM02578x" name="NH3" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="H3N">
+      <species metaid="M_MAM02578x" sboTerm="SBO:0000247" id="M_MAM02578x" name="NH3" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="H3N">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02578x">
+            <rdf:Description rdf:about="#M_MAM02578x">
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                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:16134"/>
@@ -71638,10 +71674,10 @@
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-      <species metaid="MAM02578r" sboTerm="SBO:0000247" id="MAM02578r" name="NH3" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="H3N">
+      <species metaid="M_MAM02578r" sboTerm="SBO:0000247" id="M_MAM02578r" name="NH3" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="H3N">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02578r">
+            <rdf:Description rdf:about="#M_MAM02578r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:16134"/>
@@ -71652,10 +71688,10 @@
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-      <species metaid="MAM02578e" sboTerm="SBO:0000247" id="MAM02578e" name="NH3" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="H3N">
+      <species metaid="M_MAM02578e" sboTerm="SBO:0000247" id="M_MAM02578e" name="NH3" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="H3N">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02578e">
+            <rdf:Description rdf:about="#M_MAM02578e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:16134"/>
@@ -71666,10 +71702,10 @@
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-      <species metaid="MAM02579c" sboTerm="SBO:0000247" id="MAM02579c" name="NH4+" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="H4N">
+      <species metaid="M_MAM02579c" sboTerm="SBO:0000247" id="M_MAM02579c" name="NH4+" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="H4N">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02579c">
+            <rdf:Description rdf:about="#M_MAM02579c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/nh4"/>
@@ -71685,10 +71721,10 @@
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         </annotation>
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-      <species metaid="MAM02579m" sboTerm="SBO:0000247" id="MAM02579m" name="NH4+" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="H4N">
+      <species metaid="M_MAM02579m" sboTerm="SBO:0000247" id="M_MAM02579m" name="NH4+" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="H4N">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02579m">
+            <rdf:Description rdf:about="#M_MAM02579m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/nh4"/>
@@ -71704,10 +71740,10 @@
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         </annotation>
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-      <species metaid="MAM02579e" sboTerm="SBO:0000247" id="MAM02579e" name="NH4+" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="H4N">
+      <species metaid="M_MAM02579e" sboTerm="SBO:0000247" id="M_MAM02579e" name="NH4+" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="H4N">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02579e">
+            <rdf:Description rdf:about="#M_MAM02579e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/nh4"/>
@@ -71723,10 +71759,10 @@
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-      <species metaid="MAM02580c" sboTerm="SBO:0000247" id="MAM02580c" name="N-hydroxy-1-aminonaphthalene" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H9NO">
+      <species metaid="M_MAM02580c" sboTerm="SBO:0000247" id="M_MAM02580c" name="N-hydroxy-1-aminonaphthalene" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H9NO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02580c">
+            <rdf:Description rdf:about="#M_MAM02580c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C14789"/>
@@ -71738,10 +71774,10 @@
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         </annotation>
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-      <species metaid="MAM02581c" sboTerm="SBO:0000247" id="MAM02581c" name="nicotinamide D-ribonucleotide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C11H14N2O8P">
+      <species metaid="M_MAM02581c" sboTerm="SBO:0000247" id="M_MAM02581c" name="nicotinamide D-ribonucleotide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C11H14N2O8P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02581c">
+            <rdf:Description rdf:about="#M_MAM02581c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/nmn"/>
@@ -71757,10 +71793,10 @@
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         </annotation>
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-      <species metaid="MAM02581m" sboTerm="SBO:0000247" id="MAM02581m" name="nicotinamide D-ribonucleotide" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C11H14N2O8P">
+      <species metaid="M_MAM02581m" sboTerm="SBO:0000247" id="M_MAM02581m" name="nicotinamide D-ribonucleotide" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C11H14N2O8P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02581m">
+            <rdf:Description rdf:about="#M_MAM02581m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/nmn"/>
@@ -71776,10 +71812,10 @@
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         </annotation>
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-      <species metaid="MAM02581n" sboTerm="SBO:0000247" id="MAM02581n" name="nicotinamide D-ribonucleotide" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C11H14N2O8P">
+      <species metaid="M_MAM02581n" sboTerm="SBO:0000247" id="M_MAM02581n" name="nicotinamide D-ribonucleotide" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C11H14N2O8P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02581n">
+            <rdf:Description rdf:about="#M_MAM02581n">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/nmn"/>
@@ -71795,10 +71831,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM02582c" sboTerm="SBO:0000247" id="MAM02582c" name="nicotinamide ribonucleoside" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C11H15N2O5">
+      <species metaid="M_MAM02582c" sboTerm="SBO:0000247" id="M_MAM02582c" name="nicotinamide ribonucleoside" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C11H15N2O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02582c">
+            <rdf:Description rdf:about="#M_MAM02582c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/rnam"/>
@@ -71813,10 +71849,10 @@
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         </annotation>
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-      <species metaid="MAM02583c" sboTerm="SBO:0000247" id="MAM02583c" name="nicotinamide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H6N2O">
+      <species metaid="M_MAM02583c" sboTerm="SBO:0000247" id="M_MAM02583c" name="nicotinamide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H6N2O">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02583c">
+            <rdf:Description rdf:about="#M_MAM02583c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ncam"/>
@@ -71831,10 +71867,10 @@
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         </annotation>
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-      <species metaid="MAM02583e" sboTerm="SBO:0000247" id="MAM02583e" name="nicotinamide" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H6N2O">
+      <species metaid="M_MAM02583e" sboTerm="SBO:0000247" id="M_MAM02583e" name="nicotinamide" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H6N2O">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02583e">
+            <rdf:Description rdf:about="#M_MAM02583e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ncam"/>
@@ -71849,10 +71885,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM02584c" sboTerm="SBO:0000247" id="MAM02584c" name="nicotinate D-ribonucleoside" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C11H13NO6">
+      <species metaid="M_MAM02584c" sboTerm="SBO:0000247" id="M_MAM02584c" name="nicotinate D-ribonucleoside" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C11H13NO6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02584c">
+            <rdf:Description rdf:about="#M_MAM02584c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/nicrns"/>
@@ -71866,10 +71902,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM02585c" sboTerm="SBO:0000247" id="MAM02585c" name="nicotinate ribonucleotide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C11H12NO9P">
+      <species metaid="M_MAM02585c" sboTerm="SBO:0000247" id="M_MAM02585c" name="nicotinate ribonucleotide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C11H12NO9P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02585c">
+            <rdf:Description rdf:about="#M_MAM02585c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/nicrnt"/>
@@ -71884,10 +71920,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02585n" sboTerm="SBO:0000247" id="MAM02585n" name="nicotinate ribonucleotide" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C11H12NO9P">
+      <species metaid="M_MAM02585n" sboTerm="SBO:0000247" id="M_MAM02585n" name="nicotinate ribonucleotide" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C11H12NO9P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02585n">
+            <rdf:Description rdf:about="#M_MAM02585n">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/nicrnt"/>
@@ -71902,10 +71938,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02586c" sboTerm="SBO:0000247" id="MAM02586c" name="nicotinate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H4NO2">
+      <species metaid="M_MAM02586c" sboTerm="SBO:0000247" id="M_MAM02586c" name="nicotinate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H4NO2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02586c">
+            <rdf:Description rdf:about="#M_MAM02586c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/nac"/>
@@ -71921,10 +71957,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM02586e" sboTerm="SBO:0000247" id="MAM02586e" name="nicotinate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H4NO2">
+      <species metaid="M_MAM02586e" sboTerm="SBO:0000247" id="M_MAM02586e" name="nicotinate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H4NO2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02586e">
+            <rdf:Description rdf:about="#M_MAM02586e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/nac"/>
@@ -71940,10 +71976,10 @@
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-      <species metaid="MAM02587c" sboTerm="SBO:0000247" id="MAM02587c" name="nifedipine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C17H18N2O6">
+      <species metaid="M_MAM02587c" sboTerm="SBO:0000247" id="M_MAM02587c" name="nifedipine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C17H18N2O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02587c">
+            <rdf:Description rdf:about="#M_MAM02587c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/nifedipine"/>
@@ -71960,10 +71996,10 @@
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         </annotation>
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-      <species metaid="MAM02587e" sboTerm="SBO:0000247" id="MAM02587e" name="nifedipine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C17H18N2O6">
+      <species metaid="M_MAM02587e" sboTerm="SBO:0000247" id="M_MAM02587e" name="nifedipine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C17H18N2O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02587e">
+            <rdf:Description rdf:about="#M_MAM02587e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/nifedipine"/>
@@ -71980,10 +72016,10 @@
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-      <species metaid="MAM02588c" sboTerm="SBO:0000247" id="MAM02588c" name="nitrite" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="NO2">
+      <species metaid="M_MAM02588c" sboTerm="SBO:0000247" id="M_MAM02588c" name="nitrite" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="NO2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02588c">
+            <rdf:Description rdf:about="#M_MAM02588c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:16301"/>
@@ -71998,10 +72034,10 @@
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         </annotation>
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-      <species metaid="MAM02588e" sboTerm="SBO:0000247" id="MAM02588e" name="nitrite" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="NO2">
+      <species metaid="M_MAM02588e" sboTerm="SBO:0000247" id="M_MAM02588e" name="nitrite" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="NO2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02588e">
+            <rdf:Description rdf:about="#M_MAM02588e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:16301"/>
@@ -72016,10 +72052,10 @@
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         </annotation>
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-      <species metaid="MAM02589c" sboTerm="SBO:0000247" id="MAM02589c" name="nitrogen" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="N2">
+      <species metaid="M_MAM02589c" sboTerm="SBO:0000247" id="M_MAM02589c" name="nitrogen" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="N2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02589c">
+            <rdf:Description rdf:about="#M_MAM02589c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:17997"/>
@@ -72032,10 +72068,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02590c" sboTerm="SBO:0000247" id="MAM02590c" name="nitrosoperoxycarbonate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="CNO5">
+      <species metaid="M_MAM02590c" sboTerm="SBO:0000247" id="M_MAM02590c" name="nitrosoperoxycarbonate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="CNO5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02590c">
+            <rdf:Description rdf:about="#M_MAM02590c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM64792"/>
@@ -72047,10 +72083,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02591c" sboTerm="SBO:0000247" id="MAM02591c" name="nitryl-chloride" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="ClNO2">
+      <species metaid="M_MAM02591c" sboTerm="SBO:0000247" id="M_MAM02591c" name="nitryl-chloride" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="ClNO2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02591c">
+            <rdf:Description rdf:about="#M_MAM02591c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM162976"/>
@@ -72063,10 +72099,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM02593c" sboTerm="SBO:0000247" id="MAM02593c" name="nLc5Cer" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C52H92N3O27RCO">
+      <species metaid="M_MAM02593c" sboTerm="SBO:0000247" id="M_MAM02593c" name="nLc5Cer" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C52H92N3O27RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02593c">
+            <rdf:Description rdf:about="#M_MAM02593c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/acglcgal14acglcgalgluside_hs"/>
@@ -72080,10 +72116,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02593g" sboTerm="SBO:0000247" id="MAM02593g" name="nLc5Cer" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C52H92N3O27RCO">
+      <species metaid="M_MAM02593g" sboTerm="SBO:0000247" id="M_MAM02593g" name="nLc5Cer" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C52H92N3O27RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02593g">
+            <rdf:Description rdf:about="#M_MAM02593g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/acglcgal14acglcgalgluside_hs"/>
@@ -72097,10 +72133,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02594c" sboTerm="SBO:0000247" id="MAM02594c" name="nLc6Cer" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C58H102N3O32RCO">
+      <species metaid="M_MAM02594c" sboTerm="SBO:0000247" id="M_MAM02594c" name="nLc6Cer" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C58H102N3O32RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02594c">
+            <rdf:Description rdf:about="#M_MAM02594c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/galacglcgal14acglcgalgluside_hs"/>
@@ -72113,10 +72149,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02594g" sboTerm="SBO:0000247" id="MAM02594g" name="nLc6Cer" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C58H102N3O32RCO">
+      <species metaid="M_MAM02594g" sboTerm="SBO:0000247" id="M_MAM02594g" name="nLc6Cer" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C58H102N3O32RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02594g">
+            <rdf:Description rdf:about="#M_MAM02594g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/galacglcgal14acglcgalgluside_hs"/>
@@ -72129,10 +72165,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02595c" sboTerm="SBO:0000247" id="MAM02595c" name="nLc7Cer" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C66H115N4O37RCO">
+      <species metaid="M_MAM02595c" sboTerm="SBO:0000247" id="M_MAM02595c" name="nLc7Cer" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C66H115N4O37RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02595c">
+            <rdf:Description rdf:about="#M_MAM02595c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/acglc13galacglcgal14acglcgalgluside_hs"/>
@@ -72145,10 +72181,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM02595g" sboTerm="SBO:0000247" id="MAM02595g" name="nLc7Cer" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C66H115N4O37RCO">
+      <species metaid="M_MAM02595g" sboTerm="SBO:0000247" id="M_MAM02595g" name="nLc7Cer" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C66H115N4O37RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02595g">
+            <rdf:Description rdf:about="#M_MAM02595g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/acglc13galacglcgal14acglcgalgluside_hs"/>
@@ -72161,10 +72197,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02596c" sboTerm="SBO:0000247" id="MAM02596c" name="nLc8Cer" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C72H125N4O42RCO">
+      <species metaid="M_MAM02596c" sboTerm="SBO:0000247" id="M_MAM02596c" name="nLc8Cer" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C72H125N4O42RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02596c">
+            <rdf:Description rdf:about="#M_MAM02596c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/galacglc13galacglcgal14acglcgalgluside_hs"/>
@@ -72177,10 +72213,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02596g" sboTerm="SBO:0000247" id="MAM02596g" name="nLc8Cer" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C72H125N4O42RCO">
+      <species metaid="M_MAM02596g" sboTerm="SBO:0000247" id="M_MAM02596g" name="nLc8Cer" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C72H125N4O42RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02596g">
+            <rdf:Description rdf:about="#M_MAM02596g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/galacglc13galacglcgal14acglcgalgluside_hs"/>
@@ -72193,10 +72229,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02597g" sboTerm="SBO:0000247" id="MAM02597g" name="nm2masn" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C42H70N3O30X">
+      <species metaid="M_MAM02597g" sboTerm="SBO:0000247" id="M_MAM02597g" name="nm2masn" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C42H70N3O30X">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02597g">
+            <rdf:Description rdf:about="#M_MAM02597g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/nm2masn"/>
@@ -72208,10 +72244,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM02598g" sboTerm="SBO:0000247" id="MAM02598g" name="nm4masn" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C54H90N3O40X">
+      <species metaid="M_MAM02598g" sboTerm="SBO:0000247" id="M_MAM02598g" name="nm4masn" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C54H90N3O40X">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02598g">
+            <rdf:Description rdf:about="#M_MAM02598g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/nm4masn"/>
@@ -72223,10 +72259,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02599c" sboTerm="SBO:0000247" id="MAM02599c" name="N-methyl-4,6,7-trihydroxy-1,2,3,4-tetrahydroisoquinoline" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H13NO3">
+      <species metaid="M_MAM02599c" sboTerm="SBO:0000247" id="M_MAM02599c" name="N-methyl-4,6,7-trihydroxy-1,2,3,4-tetrahydroisoquinoline" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H13NO3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02599c">
+            <rdf:Description rdf:about="#M_MAM02599c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM158565"/>
@@ -72238,10 +72274,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02600c" sboTerm="SBO:0000247" id="MAM02600c" name="N-methylethanolamine-phosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C3H9NO4P">
+      <species metaid="M_MAM02600c" sboTerm="SBO:0000247" id="M_MAM02600c" name="N-methylethanolamine-phosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C3H9NO4P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02600c">
+            <rdf:Description rdf:about="#M_MAM02600c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:16463"/>
@@ -72255,10 +72291,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02601c" sboTerm="SBO:0000247" id="MAM02601c" name="N-methylhistamine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C6H12N3">
+      <species metaid="M_MAM02601c" sboTerm="SBO:0000247" id="M_MAM02601c" name="N-methylhistamine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C6H12N3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02601c">
+            <rdf:Description rdf:about="#M_MAM02601c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/mhista"/>
@@ -72274,10 +72310,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02603c" sboTerm="SBO:0000247" id="MAM02603c" name="N-methylsalsolinol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C11H16NO2">
+      <species metaid="M_MAM02603c" sboTerm="SBO:0000247" id="M_MAM02603c" name="N-methylsalsolinol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C11H16NO2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02603c">
+            <rdf:Description rdf:about="#M_MAM02603c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/hmdb/HMDB03892"/>
@@ -72290,10 +72326,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02606c" sboTerm="SBO:0000247" id="MAM02606c" name="N-methyltyramine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C9H14NO">
+      <species metaid="M_MAM02606c" sboTerm="SBO:0000247" id="M_MAM02606c" name="N-methyltyramine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C9H14NO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02606c">
+            <rdf:Description rdf:about="#M_MAM02606c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:17458"/>
@@ -72308,10 +72344,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02607c" sboTerm="SBO:0000247" id="MAM02607c" name="NNAL-N-glucuronide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C16H23N3O8">
+      <species metaid="M_MAM02607c" sboTerm="SBO:0000247" id="M_MAM02607c" name="NNAL-N-glucuronide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C16H23N3O8">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02607c">
+            <rdf:Description rdf:about="#M_MAM02607c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C19606"/>
@@ -72323,10 +72359,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02608c" sboTerm="SBO:0000247" id="MAM02608c" name="N-nitrosomethanamine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="CH4N2O">
+      <species metaid="M_MAM02608c" sboTerm="SBO:0000247" id="M_MAM02608c" name="N-nitrosomethanamine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="CH4N2O">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02608c">
+            <rdf:Description rdf:about="#M_MAM02608c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C19568"/>
@@ -72338,10 +72374,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02609c" sboTerm="SBO:0000247" id="MAM02609c" name="NO" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="NO">
+      <species metaid="M_MAM02609c" sboTerm="SBO:0000247" id="M_MAM02609c" name="NO" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="NO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02609c">
+            <rdf:Description rdf:about="#M_MAM02609c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/no"/>
@@ -72357,10 +72393,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02609e" sboTerm="SBO:0000247" id="MAM02609e" name="NO" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="NO">
+      <species metaid="M_MAM02609e" sboTerm="SBO:0000247" id="M_MAM02609e" name="NO" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="NO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02609e">
+            <rdf:Description rdf:about="#M_MAM02609e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/no"/>
@@ -72376,10 +72412,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02610c" sboTerm="SBO:0000247" id="MAM02610c" name="noladin-ether" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H40O3">
+      <species metaid="M_MAM02610c" sboTerm="SBO:0000247" id="M_MAM02610c" name="noladin-ether" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H40O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02610c">
+            <rdf:Description rdf:about="#M_MAM02610c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM34896"/>
@@ -72390,10 +72426,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02611c" sboTerm="SBO:0000247" id="MAM02611c" name="nonadecanoylcarnitine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C26H51NO4">
+      <species metaid="M_MAM02611c" sboTerm="SBO:0000247" id="M_MAM02611c" name="nonadecanoylcarnitine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C26H51NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02611c">
+            <rdf:Description rdf:about="#M_MAM02611c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M02611"/>
@@ -72403,10 +72439,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02611m" sboTerm="SBO:0000247" id="MAM02611m" name="nonadecanoylcarnitine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C26H51NO4">
+      <species metaid="M_MAM02611m" sboTerm="SBO:0000247" id="M_MAM02611m" name="nonadecanoylcarnitine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C26H51NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02611m">
+            <rdf:Description rdf:about="#M_MAM02611m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M02611"/>
@@ -72416,10 +72452,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02611r" sboTerm="SBO:0000247" id="MAM02611r" name="nonadecanoylcarnitine" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C26H51NO4">
+      <species metaid="M_MAM02611r" sboTerm="SBO:0000247" id="M_MAM02611r" name="nonadecanoylcarnitine" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C26H51NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02611r">
+            <rdf:Description rdf:about="#M_MAM02611r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M02611"/>
@@ -72429,10 +72465,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02612c" sboTerm="SBO:0000247" id="MAM02612c" name="nonadecanoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C40H68N7O17P3S">
+      <species metaid="M_MAM02612c" sboTerm="SBO:0000247" id="M_MAM02612c" name="nonadecanoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C40H68N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02612c">
+            <rdf:Description rdf:about="#M_MAM02612c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM146187"/>
@@ -72443,10 +72479,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02612m" sboTerm="SBO:0000247" id="MAM02612m" name="nonadecanoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C40H68N7O17P3S">
+      <species metaid="M_MAM02612m" sboTerm="SBO:0000247" id="M_MAM02612m" name="nonadecanoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C40H68N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02612m">
+            <rdf:Description rdf:about="#M_MAM02612m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM146187"/>
@@ -72457,10 +72493,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02612r" sboTerm="SBO:0000247" id="MAM02612r" name="nonadecanoyl-CoA" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C40H68N7O17P3S">
+      <species metaid="M_MAM02612r" sboTerm="SBO:0000247" id="M_MAM02612r" name="nonadecanoyl-CoA" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C40H68N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02612r">
+            <rdf:Description rdf:about="#M_MAM02612r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM146187"/>
@@ -72471,10 +72507,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02613c" sboTerm="SBO:0000247" id="MAM02613c" name="nonadecylic acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C19H37O2">
+      <species metaid="M_MAM02613c" sboTerm="SBO:0000247" id="M_MAM02613c" name="nonadecylic acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C19H37O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02613c">
+            <rdf:Description rdf:about="#M_MAM02613c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:39246"/>
@@ -72490,10 +72526,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02613l" sboTerm="SBO:0000247" id="MAM02613l" name="nonadecylic acid" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C19H37O2">
+      <species metaid="M_MAM02613l" sboTerm="SBO:0000247" id="M_MAM02613l" name="nonadecylic acid" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C19H37O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02613l">
+            <rdf:Description rdf:about="#M_MAM02613l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:39246"/>
@@ -72509,10 +72545,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02613r" sboTerm="SBO:0000247" id="MAM02613r" name="nonadecylic acid" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C19H37O2">
+      <species metaid="M_MAM02613r" sboTerm="SBO:0000247" id="M_MAM02613r" name="nonadecylic acid" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C19H37O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02613r">
+            <rdf:Description rdf:about="#M_MAM02613r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:39246"/>
@@ -72528,10 +72564,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02613e" sboTerm="SBO:0000247" id="MAM02613e" name="nonadecylic acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C19H37O2">
+      <species metaid="M_MAM02613e" sboTerm="SBO:0000247" id="M_MAM02613e" name="nonadecylic acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C19H37O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02613e">
+            <rdf:Description rdf:about="#M_MAM02613e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:39246"/>
@@ -72547,10 +72583,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02614c" sboTerm="SBO:0000247" id="MAM02614c" name="nonanoic acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C9H17O2">
+      <species metaid="M_MAM02614c" sboTerm="SBO:0000247" id="M_MAM02614c" name="nonanoic acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C9H17O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02614c">
+            <rdf:Description rdf:about="#M_MAM02614c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:29019"/>
@@ -72566,10 +72602,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02614e" sboTerm="SBO:0000247" id="MAM02614e" name="nonanoic acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C9H17O2">
+      <species metaid="M_MAM02614e" sboTerm="SBO:0000247" id="M_MAM02614e" name="nonanoic acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C9H17O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02614e">
+            <rdf:Description rdf:about="#M_MAM02614e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:29019"/>
@@ -72585,10 +72621,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02615c" sboTerm="SBO:0000247" id="MAM02615c" name="nonanoyl-[ACP]" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H37N2O8PRS">
+      <species metaid="M_MAM02615c" sboTerm="SBO:0000247" id="M_MAM02615c" name="nonanoyl-[ACP]" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H37N2O8PRS">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02615c">
+            <rdf:Description rdf:about="#M_MAM02615c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M02615"/>
@@ -72598,10 +72634,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02616c" sboTerm="SBO:0000247" id="MAM02616c" name="nonanoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C30H48N7O17P3S">
+      <species metaid="M_MAM02616c" sboTerm="SBO:0000247" id="M_MAM02616c" name="nonanoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C30H48N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02616c">
+            <rdf:Description rdf:about="#M_MAM02616c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/noncoa"/>
@@ -72619,10 +72655,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02616m" sboTerm="SBO:0000247" id="MAM02616m" name="nonanoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C30H48N7O17P3S">
+      <species metaid="M_MAM02616m" sboTerm="SBO:0000247" id="M_MAM02616m" name="nonanoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C30H48N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02616m">
+            <rdf:Description rdf:about="#M_MAM02616m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/noncoa"/>
@@ -72640,10 +72676,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02617c" sboTerm="SBO:0000247" id="MAM02617c" name="noradrenaline" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C8H12NO3">
+      <species metaid="M_MAM02617c" sboTerm="SBO:0000247" id="M_MAM02617c" name="noradrenaline" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C8H12NO3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02617c">
+            <rdf:Description rdf:about="#M_MAM02617c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/nrpphr"/>
@@ -72659,10 +72695,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02617e" sboTerm="SBO:0000247" id="MAM02617e" name="noradrenaline" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C8H12NO3">
+      <species metaid="M_MAM02617e" sboTerm="SBO:0000247" id="M_MAM02617e" name="noradrenaline" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C8H12NO3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02617e">
+            <rdf:Description rdf:about="#M_MAM02617e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/nrpphr"/>
@@ -72678,10 +72714,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02618c" sboTerm="SBO:0000247" id="MAM02618c" name="noradrenochrome" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H7NO3">
+      <species metaid="M_MAM02618c" sboTerm="SBO:0000247" id="M_MAM02618c" name="noradrenochrome" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H7NO3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02618c">
+            <rdf:Description rdf:about="#M_MAM02618c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM64900"/>
@@ -72694,10 +72730,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02620c" sboTerm="SBO:0000247" id="MAM02620c" name="norepinephrine sulfate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H11NO6S">
+      <species metaid="M_MAM02620c" sboTerm="SBO:0000247" id="M_MAM02620c" name="norepinephrine sulfate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H11NO6S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02620c">
+            <rdf:Description rdf:about="#M_MAM02620c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/nrpphrsf"/>
@@ -72711,10 +72747,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02620e" sboTerm="SBO:0000247" id="MAM02620e" name="norepinephrine sulfate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H11NO6S">
+      <species metaid="M_MAM02620e" sboTerm="SBO:0000247" id="M_MAM02620e" name="norepinephrine sulfate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H11NO6S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02620e">
+            <rdf:Description rdf:about="#M_MAM02620e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/nrpphrsf"/>
@@ -72728,10 +72764,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02621c" sboTerm="SBO:0000247" id="MAM02621c" name="norlaudanosoline" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C16H18NO4">
+      <species metaid="M_MAM02621c" sboTerm="SBO:0000247" id="M_MAM02621c" name="norlaudanosoline" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C16H18NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02621c">
+            <rdf:Description rdf:about="#M_MAM02621c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:28770"/>
@@ -72745,10 +72781,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02622c" sboTerm="SBO:0000247" id="MAM02622c" name="normetanephrine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C9H14NO3">
+      <species metaid="M_MAM02622c" sboTerm="SBO:0000247" id="M_MAM02622c" name="normetanephrine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C9H14NO3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02622c">
+            <rdf:Description rdf:about="#M_MAM02622c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/normete__L"/>
@@ -72764,10 +72800,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02623c" sboTerm="SBO:0000247" id="MAM02623c" name="N-pantothenoylcysteine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C12H21N2O6S">
+      <species metaid="M_MAM02623c" sboTerm="SBO:0000247" id="M_MAM02623c" name="N-pantothenoylcysteine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C12H21N2O6S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02623c">
+            <rdf:Description rdf:about="#M_MAM02623c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C04079"/>
@@ -72780,10 +72816,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02623m" sboTerm="SBO:0000247" id="MAM02623m" name="N-pantothenoylcysteine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C12H21N2O6S">
+      <species metaid="M_MAM02623m" sboTerm="SBO:0000247" id="M_MAM02623m" name="N-pantothenoylcysteine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C12H21N2O6S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02623m">
+            <rdf:Description rdf:about="#M_MAM02623m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C04079"/>
@@ -72796,10 +72832,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02624c" sboTerm="SBO:0000247" id="MAM02624c" name="N-retinylidene-N-retinylethanolamine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C42H58NO">
+      <species metaid="M_MAM02624c" sboTerm="SBO:0000247" id="M_MAM02624c" name="N-retinylidene-N-retinylethanolamine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C42H58NO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02624c">
+            <rdf:Description rdf:about="#M_MAM02624c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM114152"/>
@@ -72810,10 +72846,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02625c" sboTerm="SBO:0000247" id="MAM02625c" name="N-substituted amino acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H3NO3R2">
+      <species metaid="M_MAM02625c" sboTerm="SBO:0000247" id="M_MAM02625c" name="N-substituted amino acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H3NO3R2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02625c">
+            <rdf:Description rdf:about="#M_MAM02625c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C03523"/>
@@ -72825,10 +72861,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02626c" sboTerm="SBO:0000247" id="MAM02626c" name="N-substituted aminoacyl tRNA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H2NO2R3">
+      <species metaid="M_MAM02626c" sboTerm="SBO:0000247" id="M_MAM02626c" name="N-substituted aminoacyl tRNA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H2NO2R3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02626c">
+            <rdf:Description rdf:about="#M_MAM02626c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C03880"/>
@@ -72840,10 +72876,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02627c" sboTerm="SBO:0000247" id="MAM02627c" name="N-tetradecanoylglycylpeptide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H33N2O4R">
+      <species metaid="M_MAM02627c" sboTerm="SBO:0000247" id="M_MAM02627c" name="N-tetradecanoylglycylpeptide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H33N2O4R">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02627c">
+            <rdf:Description rdf:about="#M_MAM02627c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:17739"/>
@@ -72856,10 +72892,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02628c" sboTerm="SBO:0000247" id="MAM02628c" name="N-trimethyl-2-aminoethylphosphonate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C5H13NO3P">
+      <species metaid="M_MAM02628c" sboTerm="SBO:0000247" id="M_MAM02628c" name="N-trimethyl-2-aminoethylphosphonate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C5H13NO3P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02628c">
+            <rdf:Description rdf:about="#M_MAM02628c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ntm2amep"/>
@@ -72874,10 +72910,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02629c" sboTerm="SBO:0000247" id="MAM02629c" name="O-1-alk-1-enyl-2-acyl-sn-glycero-3-phosphoethanolamine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H14NO7PR2">
+      <species metaid="M_MAM02629c" sboTerm="SBO:0000247" id="M_MAM02629c" name="O-1-alk-1-enyl-2-acyl-sn-glycero-3-phosphoethanolamine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H14NO7PR2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02629c">
+            <rdf:Description rdf:about="#M_MAM02629c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dak2gpe_hs"/>
@@ -72891,10 +72927,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02630c" sboTerm="SBO:0000247" id="MAM02630c" name="O2" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="O2">
+      <species metaid="M_MAM02630c" sboTerm="SBO:0000247" id="M_MAM02630c" name="O2" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02630c">
+            <rdf:Description rdf:about="#M_MAM02630c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/o2"/>
@@ -72910,10 +72946,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02631c" sboTerm="SBO:0000247" id="MAM02631c" name="O2-" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="O2">
+      <species metaid="M_MAM02631c" sboTerm="SBO:0000247" id="M_MAM02631c" name="O2-" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02631c">
+            <rdf:Description rdf:about="#M_MAM02631c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/o2s"/>
@@ -72929,10 +72965,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02630g" sboTerm="SBO:0000247" id="MAM02630g" name="O2" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="O2">
+      <species metaid="M_MAM02630g" sboTerm="SBO:0000247" id="M_MAM02630g" name="O2" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02630g">
+            <rdf:Description rdf:about="#M_MAM02630g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/o2"/>
@@ -72948,10 +72984,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02630l" sboTerm="SBO:0000247" id="MAM02630l" name="O2" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="O2">
+      <species metaid="M_MAM02630l" sboTerm="SBO:0000247" id="M_MAM02630l" name="O2" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02630l">
+            <rdf:Description rdf:about="#M_MAM02630l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/o2"/>
@@ -72967,10 +73003,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02630m" sboTerm="SBO:0000247" id="MAM02630m" name="O2" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="O2">
+      <species metaid="M_MAM02630m" sboTerm="SBO:0000247" id="M_MAM02630m" name="O2" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02630m">
+            <rdf:Description rdf:about="#M_MAM02630m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/o2"/>
@@ -72986,10 +73022,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02631m" sboTerm="SBO:0000247" id="MAM02631m" name="O2-" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="O2">
+      <species metaid="M_MAM02631m" sboTerm="SBO:0000247" id="M_MAM02631m" name="O2-" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02631m">
+            <rdf:Description rdf:about="#M_MAM02631m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/o2s"/>
@@ -73005,10 +73041,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02630n" sboTerm="SBO:0000247" id="MAM02630n" name="O2" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="O2">
+      <species metaid="M_MAM02630n" sboTerm="SBO:0000247" id="M_MAM02630n" name="O2" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02630n">
+            <rdf:Description rdf:about="#M_MAM02630n">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/o2"/>
@@ -73024,10 +73060,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02631n" sboTerm="SBO:0000247" id="MAM02631n" name="O2-" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="O2">
+      <species metaid="M_MAM02631n" sboTerm="SBO:0000247" id="M_MAM02631n" name="O2-" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02631n">
+            <rdf:Description rdf:about="#M_MAM02631n">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/o2s"/>
@@ -73043,10 +73079,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02630x" sboTerm="SBO:0000247" id="MAM02630x" name="O2" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="O2">
+      <species metaid="M_MAM02630x" sboTerm="SBO:0000247" id="M_MAM02630x" name="O2" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02630x">
+            <rdf:Description rdf:about="#M_MAM02630x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/o2"/>
@@ -73062,10 +73098,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02631x" sboTerm="SBO:0000247" id="MAM02631x" name="O2-" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="O2">
+      <species metaid="M_MAM02631x" sboTerm="SBO:0000247" id="M_MAM02631x" name="O2-" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02631x">
+            <rdf:Description rdf:about="#M_MAM02631x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/o2s"/>
@@ -73081,10 +73117,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02630r" sboTerm="SBO:0000247" id="MAM02630r" name="O2" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="O2">
+      <species metaid="M_MAM02630r" sboTerm="SBO:0000247" id="M_MAM02630r" name="O2" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02630r">
+            <rdf:Description rdf:about="#M_MAM02630r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/o2"/>
@@ -73100,10 +73136,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02630e" sboTerm="SBO:0000247" id="MAM02630e" name="O2" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="O2">
+      <species metaid="M_MAM02630e" sboTerm="SBO:0000247" id="M_MAM02630e" name="O2" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02630e">
+            <rdf:Description rdf:about="#M_MAM02630e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/o2"/>
@@ -73119,10 +73155,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02631e" sboTerm="SBO:0000247" id="MAM02631e" name="O2-" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="O2">
+      <species metaid="M_MAM02631e" sboTerm="SBO:0000247" id="M_MAM02631e" name="O2-" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02631e">
+            <rdf:Description rdf:about="#M_MAM02631e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/o2s"/>
@@ -73138,10 +73174,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02632c" sboTerm="SBO:0000247" id="MAM02632c" name="O2-4a-cyclic-tetrahydrobiopterin" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H13N5O3">
+      <species metaid="M_MAM02632c" sboTerm="SBO:0000247" id="M_MAM02632c" name="O2-4a-cyclic-tetrahydrobiopterin" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H13N5O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02632c">
+            <rdf:Description rdf:about="#M_MAM02632c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM65212"/>
@@ -73153,10 +73189,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02632n" sboTerm="SBO:0000247" id="MAM02632n" name="O2-4a-cyclic-tetrahydrobiopterin" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H13N5O3">
+      <species metaid="M_MAM02632n" sboTerm="SBO:0000247" id="M_MAM02632n" name="O2-4a-cyclic-tetrahydrobiopterin" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H13N5O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02632n">
+            <rdf:Description rdf:about="#M_MAM02632n">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM65212"/>
@@ -73168,10 +73204,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02633c" sboTerm="SBO:0000247" id="MAM02633c" name="OAA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C4H2O5">
+      <species metaid="M_MAM02633c" sboTerm="SBO:0000247" id="M_MAM02633c" name="OAA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C4H2O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02633c">
+            <rdf:Description rdf:about="#M_MAM02633c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/oaa"/>
@@ -73187,10 +73223,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02633m" sboTerm="SBO:0000247" id="MAM02633m" name="OAA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C4H2O5">
+      <species metaid="M_MAM02633m" sboTerm="SBO:0000247" id="M_MAM02633m" name="OAA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C4H2O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02633m">
+            <rdf:Description rdf:about="#M_MAM02633m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/oaa"/>
@@ -73206,10 +73242,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02633x" sboTerm="SBO:0000247" id="MAM02633x" name="OAA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C4H2O5">
+      <species metaid="M_MAM02633x" sboTerm="SBO:0000247" id="M_MAM02633x" name="OAA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C4H2O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02633x">
+            <rdf:Description rdf:about="#M_MAM02633x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/oaa"/>
@@ -73225,10 +73261,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02634c" sboTerm="SBO:0000247" id="MAM02634c" name="O-acetylcarnitine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H17NO4">
+      <species metaid="M_MAM02634c" sboTerm="SBO:0000247" id="M_MAM02634c" name="O-acetylcarnitine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H17NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02634c">
+            <rdf:Description rdf:about="#M_MAM02634c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/acrn"/>
@@ -73245,10 +73281,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02634m" sboTerm="SBO:0000247" id="MAM02634m" name="O-acetylcarnitine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H17NO4">
+      <species metaid="M_MAM02634m" sboTerm="SBO:0000247" id="M_MAM02634m" name="O-acetylcarnitine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H17NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02634m">
+            <rdf:Description rdf:about="#M_MAM02634m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/acrn"/>
@@ -73265,10 +73301,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02634x" sboTerm="SBO:0000247" id="MAM02634x" name="O-acetylcarnitine" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H17NO4">
+      <species metaid="M_MAM02634x" sboTerm="SBO:0000247" id="M_MAM02634x" name="O-acetylcarnitine" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H17NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02634x">
+            <rdf:Description rdf:about="#M_MAM02634x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/acrn"/>
@@ -73285,10 +73321,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02634r" sboTerm="SBO:0000247" id="MAM02634r" name="O-acetylcarnitine" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H17NO4">
+      <species metaid="M_MAM02634r" sboTerm="SBO:0000247" id="M_MAM02634r" name="O-acetylcarnitine" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H17NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02634r">
+            <rdf:Description rdf:about="#M_MAM02634r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/acrn"/>
@@ -73305,10 +73341,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02635c" sboTerm="SBO:0000247" id="MAM02635c" name="O-butanoylcarnitine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C11H21NO4">
+      <species metaid="M_MAM02635c" sboTerm="SBO:0000247" id="M_MAM02635c" name="O-butanoylcarnitine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C11H21NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02635c">
+            <rdf:Description rdf:about="#M_MAM02635c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/hmdb/HMDB02013"/>
@@ -73324,10 +73360,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02635m" sboTerm="SBO:0000247" id="MAM02635m" name="O-butanoylcarnitine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C11H21NO4">
+      <species metaid="M_MAM02635m" sboTerm="SBO:0000247" id="M_MAM02635m" name="O-butanoylcarnitine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C11H21NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02635m">
+            <rdf:Description rdf:about="#M_MAM02635m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/hmdb/HMDB02013"/>
@@ -73343,10 +73379,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02636c" sboTerm="SBO:0000247" id="MAM02636c" name="ocosatetraenoylcarnitine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C29H49NO4">
+      <species metaid="M_MAM02636c" sboTerm="SBO:0000247" id="M_MAM02636c" name="ocosatetraenoylcarnitine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C29H49NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02636c">
+            <rdf:Description rdf:about="#M_MAM02636c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/adrncrn"/>
@@ -73360,10 +73396,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02636m" sboTerm="SBO:0000247" id="MAM02636m" name="ocosatetraenoylcarnitine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C29H49NO4">
+      <species metaid="M_MAM02636m" sboTerm="SBO:0000247" id="M_MAM02636m" name="ocosatetraenoylcarnitine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C29H49NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02636m">
+            <rdf:Description rdf:about="#M_MAM02636m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/adrncrn"/>
@@ -73377,10 +73413,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02636r" sboTerm="SBO:0000247" id="MAM02636r" name="ocosatetraenoylcarnitine" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C29H49NO4">
+      <species metaid="M_MAM02636r" sboTerm="SBO:0000247" id="M_MAM02636r" name="ocosatetraenoylcarnitine" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C29H49NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02636r">
+            <rdf:Description rdf:about="#M_MAM02636r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/adrncrn"/>
@@ -73394,10 +73430,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02637c" sboTerm="SBO:0000247" id="MAM02637c" name="octadecatrienoylcarnitine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H43NO4">
+      <species metaid="M_MAM02637c" sboTerm="SBO:0000247" id="M_MAM02637c" name="octadecatrienoylcarnitine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H43NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02637c">
+            <rdf:Description rdf:about="#M_MAM02637c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M02637"/>
@@ -73407,10 +73443,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02637m" sboTerm="SBO:0000247" id="MAM02637m" name="octadecatrienoylcarnitine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H43NO4">
+      <species metaid="M_MAM02637m" sboTerm="SBO:0000247" id="M_MAM02637m" name="octadecatrienoylcarnitine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H43NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02637m">
+            <rdf:Description rdf:about="#M_MAM02637m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M02637"/>
@@ -73420,10 +73456,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM02637r" sboTerm="SBO:0000247" id="MAM02637r" name="octadecatrienoylcarnitine" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H43NO4">
+      <species metaid="M_MAM02637r" sboTerm="SBO:0000247" id="M_MAM02637r" name="octadecatrienoylcarnitine" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H43NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02637r">
+            <rdf:Description rdf:about="#M_MAM02637r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M02637"/>
@@ -73433,10 +73469,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM02638c" sboTerm="SBO:0000247" id="MAM02638c" name="octadecenoylcarnitine(11)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H47NO4">
+      <species metaid="M_MAM02638c" sboTerm="SBO:0000247" id="M_MAM02638c" name="octadecenoylcarnitine(11)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H47NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02638c">
+            <rdf:Description rdf:about="#M_MAM02638c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M02638"/>
@@ -73446,10 +73482,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02638m" sboTerm="SBO:0000247" id="MAM02638m" name="octadecenoylcarnitine(11)" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H47NO4">
+      <species metaid="M_MAM02638m" sboTerm="SBO:0000247" id="M_MAM02638m" name="octadecenoylcarnitine(11)" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H47NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02638m">
+            <rdf:Description rdf:about="#M_MAM02638m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M02638"/>
@@ -73459,10 +73495,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02638r" sboTerm="SBO:0000247" id="MAM02638r" name="octadecenoylcarnitine(11)" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H47NO4">
+      <species metaid="M_MAM02638r" sboTerm="SBO:0000247" id="M_MAM02638r" name="octadecenoylcarnitine(11)" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H47NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02638r">
+            <rdf:Description rdf:about="#M_MAM02638r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M02638"/>
@@ -73472,10 +73508,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02639c" sboTerm="SBO:0000247" id="MAM02639c" name="octadecenoylcarnitine(5)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H47NO4">
+      <species metaid="M_MAM02639c" sboTerm="SBO:0000247" id="M_MAM02639c" name="octadecenoylcarnitine(5)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H47NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02639c">
+            <rdf:Description rdf:about="#M_MAM02639c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/odecrn"/>
@@ -73490,10 +73526,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02639m" sboTerm="SBO:0000247" id="MAM02639m" name="octadecenoylcarnitine(5)" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H47NO4">
+      <species metaid="M_MAM02639m" sboTerm="SBO:0000247" id="M_MAM02639m" name="octadecenoylcarnitine(5)" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H47NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02639m">
+            <rdf:Description rdf:about="#M_MAM02639m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/odecrn"/>
@@ -73508,10 +73544,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02639r" sboTerm="SBO:0000247" id="MAM02639r" name="octadecenoylcarnitine(5)" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H47NO4">
+      <species metaid="M_MAM02639r" sboTerm="SBO:0000247" id="M_MAM02639r" name="octadecenoylcarnitine(5)" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H47NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02639r">
+            <rdf:Description rdf:about="#M_MAM02639r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/odecrn"/>
@@ -73526,10 +73562,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02640c" sboTerm="SBO:0000247" id="MAM02640c" name="octadecenoylcarnitine(7)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H47NO4">
+      <species metaid="M_MAM02640c" sboTerm="SBO:0000247" id="M_MAM02640c" name="octadecenoylcarnitine(7)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H47NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02640c">
+            <rdf:Description rdf:about="#M_MAM02640c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/vacccrn"/>
@@ -73542,10 +73578,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02640m" sboTerm="SBO:0000247" id="MAM02640m" name="octadecenoylcarnitine(7)" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H47NO4">
+      <species metaid="M_MAM02640m" sboTerm="SBO:0000247" id="M_MAM02640m" name="octadecenoylcarnitine(7)" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H47NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02640m">
+            <rdf:Description rdf:about="#M_MAM02640m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/vacccrn"/>
@@ -73558,10 +73594,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02640r" sboTerm="SBO:0000247" id="MAM02640r" name="octadecenoylcarnitine(7)" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H47NO4">
+      <species metaid="M_MAM02640r" sboTerm="SBO:0000247" id="M_MAM02640r" name="octadecenoylcarnitine(7)" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H47NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02640r">
+            <rdf:Description rdf:about="#M_MAM02640r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/vacccrn"/>
@@ -73574,10 +73610,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02641c" sboTerm="SBO:0000247" id="MAM02641c" name="octanoate radical" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H15O2">
+      <species metaid="M_MAM02641c" sboTerm="SBO:0000247" id="M_MAM02641c" name="octanoate radical" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H15O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02641c">
+            <rdf:Description rdf:about="#M_MAM02641c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM750"/>
@@ -73588,10 +73624,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02642c" sboTerm="SBO:0000247" id="MAM02642c" name="octanoic acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C8H15O2">
+      <species metaid="M_MAM02642c" sboTerm="SBO:0000247" id="M_MAM02642c" name="octanoic acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C8H15O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02642c">
+            <rdf:Description rdf:about="#M_MAM02642c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/octa"/>
@@ -73608,10 +73644,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02642e" sboTerm="SBO:0000247" id="MAM02642e" name="octanoic acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C8H15O2">
+      <species metaid="M_MAM02642e" sboTerm="SBO:0000247" id="M_MAM02642e" name="octanoic acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C8H15O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02642e">
+            <rdf:Description rdf:about="#M_MAM02642e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/octa"/>
@@ -73628,10 +73664,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02643c" sboTerm="SBO:0000247" id="MAM02643c" name="octanoyl-[ACP]" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C19H35N2O8PRS">
+      <species metaid="M_MAM02643c" sboTerm="SBO:0000247" id="M_MAM02643c" name="octanoyl-[ACP]" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C19H35N2O8PRS">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02643c">
+            <rdf:Description rdf:about="#M_MAM02643c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C05752"/>
@@ -73643,10 +73679,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02644c" sboTerm="SBO:0000247" id="MAM02644c" name="octanoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C29H46N7O17P3S">
+      <species metaid="M_MAM02644c" sboTerm="SBO:0000247" id="M_MAM02644c" name="octanoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C29H46N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02644c">
+            <rdf:Description rdf:about="#M_MAM02644c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/occoa"/>
@@ -73662,10 +73698,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02644m" sboTerm="SBO:0000247" id="MAM02644m" name="octanoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C29H46N7O17P3S">
+      <species metaid="M_MAM02644m" sboTerm="SBO:0000247" id="M_MAM02644m" name="octanoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C29H46N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02644m">
+            <rdf:Description rdf:about="#M_MAM02644m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/occoa"/>
@@ -73681,10 +73717,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02644x" sboTerm="SBO:0000247" id="MAM02644x" name="octanoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C29H46N7O17P3S">
+      <species metaid="M_MAM02644x" sboTerm="SBO:0000247" id="M_MAM02644x" name="octanoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C29H46N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02644x">
+            <rdf:Description rdf:about="#M_MAM02644x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/occoa"/>
@@ -73700,10 +73736,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02645c" sboTerm="SBO:0000247" id="MAM02645c" name="O-D-mannosylprotein" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H11O5X">
+      <species metaid="M_MAM02645c" sboTerm="SBO:0000247" id="M_MAM02645c" name="O-D-mannosylprotein" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H11O5X">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02645c">
+            <rdf:Description rdf:about="#M_MAM02645c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C02863"/>
@@ -73715,10 +73751,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02646c" sboTerm="SBO:0000247" id="MAM02646c" name="oleate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H33O2">
+      <species metaid="M_MAM02646c" sboTerm="SBO:0000247" id="M_MAM02646c" name="oleate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H33O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02646c">
+            <rdf:Description rdf:about="#M_MAM02646c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ocdcea"/>
@@ -73736,10 +73772,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02646l" sboTerm="SBO:0000247" id="MAM02646l" name="oleate" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H33O2">
+      <species metaid="M_MAM02646l" sboTerm="SBO:0000247" id="M_MAM02646l" name="oleate" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H33O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02646l">
+            <rdf:Description rdf:about="#M_MAM02646l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ocdcea"/>
@@ -73757,10 +73793,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02646r" sboTerm="SBO:0000247" id="MAM02646r" name="oleate" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H33O2">
+      <species metaid="M_MAM02646r" sboTerm="SBO:0000247" id="M_MAM02646r" name="oleate" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H33O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02646r">
+            <rdf:Description rdf:about="#M_MAM02646r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ocdcea"/>
@@ -73778,10 +73814,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02646e" sboTerm="SBO:0000247" id="MAM02646e" name="oleate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H33O2">
+      <species metaid="M_MAM02646e" sboTerm="SBO:0000247" id="M_MAM02646e" name="oleate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H33O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02646e">
+            <rdf:Description rdf:about="#M_MAM02646e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ocdcea"/>
@@ -73799,10 +73835,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02647c" sboTerm="SBO:0000247" id="MAM02647c" name="oleoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C39H64N7O17P3S">
+      <species metaid="M_MAM02647c" sboTerm="SBO:0000247" id="M_MAM02647c" name="oleoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C39H64N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02647c">
+            <rdf:Description rdf:about="#M_MAM02647c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/odecoa"/>
@@ -73820,10 +73856,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02647m" sboTerm="SBO:0000247" id="MAM02647m" name="oleoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C39H64N7O17P3S">
+      <species metaid="M_MAM02647m" sboTerm="SBO:0000247" id="M_MAM02647m" name="oleoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C39H64N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02647m">
+            <rdf:Description rdf:about="#M_MAM02647m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/odecoa"/>
@@ -73841,10 +73877,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02647x" sboTerm="SBO:0000247" id="MAM02647x" name="oleoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C39H64N7O17P3S">
+      <species metaid="M_MAM02647x" sboTerm="SBO:0000247" id="M_MAM02647x" name="oleoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C39H64N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02647x">
+            <rdf:Description rdf:about="#M_MAM02647x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/odecoa"/>
@@ -73862,10 +73898,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02647r" sboTerm="SBO:0000247" id="MAM02647r" name="oleoyl-CoA" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C39H64N7O17P3S">
+      <species metaid="M_MAM02647r" sboTerm="SBO:0000247" id="M_MAM02647r" name="oleoyl-CoA" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C39H64N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02647r">
+            <rdf:Description rdf:about="#M_MAM02647r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/odecoa"/>
@@ -73883,10 +73919,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02648c" sboTerm="SBO:0000247" id="MAM02648c" name="omega-3-arachidonic acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O2">
+      <species metaid="M_MAM02648c" sboTerm="SBO:0000247" id="M_MAM02648c" name="omega-3-arachidonic acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02648c">
+            <rdf:Description rdf:about="#M_MAM02648c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/eicostet"/>
@@ -73901,10 +73937,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02648l" sboTerm="SBO:0000247" id="MAM02648l" name="omega-3-arachidonic acid" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O2">
+      <species metaid="M_MAM02648l" sboTerm="SBO:0000247" id="M_MAM02648l" name="omega-3-arachidonic acid" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02648l">
+            <rdf:Description rdf:about="#M_MAM02648l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/eicostet"/>
@@ -73919,10 +73955,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02648r" sboTerm="SBO:0000247" id="MAM02648r" name="omega-3-arachidonic acid" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O2">
+      <species metaid="M_MAM02648r" sboTerm="SBO:0000247" id="M_MAM02648r" name="omega-3-arachidonic acid" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02648r">
+            <rdf:Description rdf:about="#M_MAM02648r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/eicostet"/>
@@ -73937,10 +73973,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02648e" sboTerm="SBO:0000247" id="MAM02648e" name="omega-3-arachidonic acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O2">
+      <species metaid="M_MAM02648e" sboTerm="SBO:0000247" id="M_MAM02648e" name="omega-3-arachidonic acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02648e">
+            <rdf:Description rdf:about="#M_MAM02648e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/eicostet"/>
@@ -73955,10 +73991,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02649m" sboTerm="SBO:0000247" id="MAM02649m" name="omega-carboxy-trinor-LTB4" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C18H24O6">
+      <species metaid="M_MAM02649m" sboTerm="SBO:0000247" id="M_MAM02649m" name="omega-carboxy-trinor-LTB4" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C18H24O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02649m">
+            <rdf:Description rdf:about="#M_MAM02649m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM65538"/>
@@ -73970,10 +74006,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02649x" sboTerm="SBO:0000247" id="MAM02649x" name="omega-carboxy-trinor-LTB4" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C18H24O6">
+      <species metaid="M_MAM02649x" sboTerm="SBO:0000247" id="M_MAM02649x" name="omega-carboxy-trinor-LTB4" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C18H24O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02649x">
+            <rdf:Description rdf:about="#M_MAM02649x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM65538"/>
@@ -73985,10 +74021,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02650x" sboTerm="SBO:0000247" id="MAM02650x" name="omega-COOH-dinor-LTE4-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C42H60N8O22P3S2">
+      <species metaid="M_MAM02650x" sboTerm="SBO:0000247" id="M_MAM02650x" name="omega-COOH-dinor-LTE4-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C42H60N8O22P3S2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02650x">
+            <rdf:Description rdf:about="#M_MAM02650x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM47396"/>
@@ -73999,10 +74035,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02652x" sboTerm="SBO:0000247" id="MAM02652x" name="omega-COOH-tetranor-LTE3-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C40H55N8O22P3S2">
+      <species metaid="M_MAM02652x" sboTerm="SBO:0000247" id="M_MAM02652x" name="omega-COOH-tetranor-LTE3-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C40H55N8O22P3S2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02652x">
+            <rdf:Description rdf:about="#M_MAM02652x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/CE6195"/>
@@ -74012,10 +74048,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02653c" sboTerm="SBO:0000247" id="MAM02653c" name="omeprazole" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C17H19N3O3S">
+      <species metaid="M_MAM02653c" sboTerm="SBO:0000247" id="M_MAM02653c" name="omeprazole" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C17H19N3O3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02653c">
+            <rdf:Description rdf:about="#M_MAM02653c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/omeprazole"/>
@@ -74031,10 +74067,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02653e" sboTerm="SBO:0000247" id="MAM02653e" name="omeprazole" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C17H19N3O3S">
+      <species metaid="M_MAM02653e" sboTerm="SBO:0000247" id="M_MAM02653e" name="omeprazole" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C17H19N3O3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02653e">
+            <rdf:Description rdf:about="#M_MAM02653e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/omeprazole"/>
@@ -74050,10 +74086,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02654c" sboTerm="SBO:0000247" id="MAM02654c" name="O-methylhippurate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H10NO3">
+      <species metaid="M_MAM02654c" sboTerm="SBO:0000247" id="M_MAM02654c" name="O-methylhippurate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H10NO3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02654c">
+            <rdf:Description rdf:about="#M_MAM02654c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM35291"/>
@@ -74065,10 +74101,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02655c" sboTerm="SBO:0000247" id="MAM02655c" name="O-phospho-L-homoserine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C4H8NO6P">
+      <species metaid="M_MAM02655c" sboTerm="SBO:0000247" id="M_MAM02655c" name="O-phospho-L-homoserine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C4H8NO6P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02655c">
+            <rdf:Description rdf:about="#M_MAM02655c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/phom"/>
@@ -74083,10 +74119,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02657c" sboTerm="SBO:0000247" id="MAM02657c" name="O-propanoylcarnitine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H19NO4">
+      <species metaid="M_MAM02657c" sboTerm="SBO:0000247" id="M_MAM02657c" name="O-propanoylcarnitine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H19NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02657c">
+            <rdf:Description rdf:about="#M_MAM02657c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pcrn"/>
@@ -74105,10 +74141,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02657m" sboTerm="SBO:0000247" id="MAM02657m" name="O-propanoylcarnitine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H19NO4">
+      <species metaid="M_MAM02657m" sboTerm="SBO:0000247" id="M_MAM02657m" name="O-propanoylcarnitine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H19NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02657m">
+            <rdf:Description rdf:about="#M_MAM02657m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pcrn"/>
@@ -74127,10 +74163,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02657x" sboTerm="SBO:0000247" id="MAM02657x" name="O-propanoylcarnitine" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H19NO4">
+      <species metaid="M_MAM02657x" sboTerm="SBO:0000247" id="M_MAM02657x" name="O-propanoylcarnitine" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H19NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02657x">
+            <rdf:Description rdf:about="#M_MAM02657x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pcrn"/>
@@ -74149,10 +74185,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02658c" sboTerm="SBO:0000247" id="MAM02658c" name="ornithine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C5H13N2O2">
+      <species metaid="M_MAM02658c" sboTerm="SBO:0000247" id="M_MAM02658c" name="ornithine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C5H13N2O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02658c">
+            <rdf:Description rdf:about="#M_MAM02658c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/orn"/>
@@ -74168,10 +74204,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02658m" sboTerm="SBO:0000247" id="MAM02658m" name="ornithine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C5H13N2O2">
+      <species metaid="M_MAM02658m" sboTerm="SBO:0000247" id="M_MAM02658m" name="ornithine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C5H13N2O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02658m">
+            <rdf:Description rdf:about="#M_MAM02658m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/orn"/>
@@ -74187,10 +74223,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02658e" sboTerm="SBO:0000247" id="MAM02658e" name="ornithine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C5H13N2O2">
+      <species metaid="M_MAM02658e" sboTerm="SBO:0000247" id="M_MAM02658e" name="ornithine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C5H13N2O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02658e">
+            <rdf:Description rdf:about="#M_MAM02658e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/orn"/>
@@ -74206,10 +74242,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02659c" sboTerm="SBO:0000247" id="MAM02659c" name="orotate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C5H3N2O4">
+      <species metaid="M_MAM02659c" sboTerm="SBO:0000247" id="M_MAM02659c" name="orotate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C5H3N2O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02659c">
+            <rdf:Description rdf:about="#M_MAM02659c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/orot"/>
@@ -74225,10 +74261,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02659e" sboTerm="SBO:0000247" id="MAM02659e" name="orotate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C5H3N2O4">
+      <species metaid="M_MAM02659e" sboTerm="SBO:0000247" id="M_MAM02659e" name="orotate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C5H3N2O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02659e">
+            <rdf:Description rdf:about="#M_MAM02659e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/orot"/>
@@ -74244,10 +74280,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02660c" sboTerm="SBO:0000247" id="MAM02660c" name="orotidine-5-phosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C10H10N2O11P">
+      <species metaid="M_MAM02660c" sboTerm="SBO:0000247" id="M_MAM02660c" name="orotidine-5-phosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C10H10N2O11P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02660c">
+            <rdf:Description rdf:about="#M_MAM02660c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/orot5p"/>
@@ -74262,10 +74298,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02661c" sboTerm="SBO:0000247" id="MAM02661c" name="oxalate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C2O4">
+      <species metaid="M_MAM02661c" sboTerm="SBO:0000247" id="M_MAM02661c" name="oxalate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C2O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02661c">
+            <rdf:Description rdf:about="#M_MAM02661c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/oxa"/>
@@ -74280,10 +74316,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02661m" sboTerm="SBO:0000247" id="MAM02661m" name="oxalate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C2O4">
+      <species metaid="M_MAM02661m" sboTerm="SBO:0000247" id="M_MAM02661m" name="oxalate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C2O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02661m">
+            <rdf:Description rdf:about="#M_MAM02661m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/oxa"/>
@@ -74298,10 +74334,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02661x" sboTerm="SBO:0000247" id="MAM02661x" name="oxalate" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C2O4">
+      <species metaid="M_MAM02661x" sboTerm="SBO:0000247" id="M_MAM02661x" name="oxalate" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C2O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02661x">
+            <rdf:Description rdf:about="#M_MAM02661x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/oxa"/>
@@ -74316,10 +74352,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02661e" sboTerm="SBO:0000247" id="MAM02661e" name="oxalate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C2O4">
+      <species metaid="M_MAM02661e" sboTerm="SBO:0000247" id="M_MAM02661e" name="oxalate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C2O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02661e">
+            <rdf:Description rdf:about="#M_MAM02661e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/oxa"/>
@@ -74334,10 +74370,10 @@
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         </annotation>
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-      <species metaid="MAM02662c" sboTerm="SBO:0000247" id="MAM02662c" name="oxalosuccinate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C6H3O7">
+      <species metaid="M_MAM02662c" sboTerm="SBO:0000247" id="M_MAM02662c" name="oxalosuccinate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C6H3O7">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02662c">
+            <rdf:Description rdf:about="#M_MAM02662c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:7815"/>
@@ -74351,10 +74387,10 @@
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-      <species metaid="MAM02662m" sboTerm="SBO:0000247" id="MAM02662m" name="oxalosuccinate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C6H3O7">
+      <species metaid="M_MAM02662m" sboTerm="SBO:0000247" id="M_MAM02662m" name="oxalosuccinate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C6H3O7">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02662m">
+            <rdf:Description rdf:about="#M_MAM02662m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:7815"/>
@@ -74368,10 +74404,10 @@
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       </species>
-      <species metaid="MAM02662x" sboTerm="SBO:0000247" id="MAM02662x" name="oxalosuccinate" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C6H3O7">
+      <species metaid="M_MAM02662x" sboTerm="SBO:0000247" id="M_MAM02662x" name="oxalosuccinate" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C6H3O7">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02662x">
+            <rdf:Description rdf:about="#M_MAM02662x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:7815"/>
@@ -74385,10 +74421,10 @@
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-      <species metaid="MAM02664c" sboTerm="SBO:0000247" id="MAM02664c" name="oxidized dithiothreitol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H8O2S2">
+      <species metaid="M_MAM02664c" sboTerm="SBO:0000247" id="M_MAM02664c" name="oxidized dithiothreitol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H8O2S2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02664c">
+            <rdf:Description rdf:about="#M_MAM02664c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dttOX"/>
@@ -74403,10 +74439,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM02665m" sboTerm="SBO:0000247" id="MAM02665m" name="oxidized ferredoxin" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="X">
+      <species metaid="M_MAM02665m" sboTerm="SBO:0000247" id="M_MAM02665m" name="oxidized ferredoxin" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="X">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02665m">
+            <rdf:Description rdf:about="#M_MAM02665m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:17908"/>
@@ -74419,10 +74455,10 @@
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-      <species metaid="MAM02666c" sboTerm="SBO:0000247" id="MAM02666c" name="oxidized thioredoxin" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C525H814N128O160S8">
+      <species metaid="M_MAM02666c" sboTerm="SBO:0000247" id="M_MAM02666c" name="oxidized thioredoxin" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C525H814N128O160S8">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02666c">
+            <rdf:Description rdf:about="#M_MAM02666c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/trdox"/>
@@ -74436,10 +74472,10 @@
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         </annotation>
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-      <species metaid="MAM02666m" sboTerm="SBO:0000247" id="MAM02666m" name="oxidized thioredoxin" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C525H814N128O160S8">
+      <species metaid="M_MAM02666m" sboTerm="SBO:0000247" id="M_MAM02666m" name="oxidized thioredoxin" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C525H814N128O160S8">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02666m">
+            <rdf:Description rdf:about="#M_MAM02666m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/trdox"/>
@@ -74453,10 +74489,10 @@
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         </annotation>
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-      <species metaid="MAM02666n" sboTerm="SBO:0000247" id="MAM02666n" name="oxidized thioredoxin" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C525H814N128O160S8">
+      <species metaid="M_MAM02666n" sboTerm="SBO:0000247" id="M_MAM02666n" name="oxidized thioredoxin" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C525H814N128O160S8">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02666n">
+            <rdf:Description rdf:about="#M_MAM02666n">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/trdox"/>
@@ -74470,10 +74506,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM02667c" sboTerm="SBO:0000247" id="MAM02667c" name="oxo-xanthurenate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C10H5NO4">
+      <species metaid="M_MAM02667c" sboTerm="SBO:0000247" id="M_MAM02667c" name="oxo-xanthurenate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C10H5NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02667c">
+            <rdf:Description rdf:about="#M_MAM02667c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM168758"/>
@@ -74484,10 +74520,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02668c" sboTerm="SBO:0000247" id="MAM02668c" name="oxytocin 1-8" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C41H61N10O12S2">
+      <species metaid="M_MAM02668c" sboTerm="SBO:0000247" id="M_MAM02668c" name="oxytocin 1-8" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C41H61N10O12S2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02668c">
+            <rdf:Description rdf:about="#M_MAM02668c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM66172"/>
@@ -74498,10 +74534,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02669c" sboTerm="SBO:0000247" id="MAM02669c" name="oxytocin" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C43H67N12O12S2">
+      <species metaid="M_MAM02669c" sboTerm="SBO:0000247" id="M_MAM02669c" name="oxytocin" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C43H67N12O12S2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02669c">
+            <rdf:Description rdf:about="#M_MAM02669c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:7872"/>
@@ -74514,10 +74550,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM02672g" sboTerm="SBO:0000247" id="MAM02672g" name="PA6" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C90H145N6O65X">
+      <species metaid="M_MAM02672g" sboTerm="SBO:0000247" id="M_MAM02672g" name="PA6" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C90H145N6O65X">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02672g">
+            <rdf:Description rdf:about="#M_MAM02672g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/s2l2fn2m2masn"/>
@@ -74530,10 +74566,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM02672l" sboTerm="SBO:0000247" id="MAM02672l" name="PA6" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C90H145N6O65X">
+      <species metaid="M_MAM02672l" sboTerm="SBO:0000247" id="M_MAM02672l" name="PA6" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C90H145N6O65X">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02672l">
+            <rdf:Description rdf:about="#M_MAM02672l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/s2l2fn2m2masn"/>
@@ -74546,10 +74582,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM02672e" sboTerm="SBO:0000247" id="MAM02672e" name="PA6" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C90H145N6O65X">
+      <species metaid="M_MAM02672e" sboTerm="SBO:0000247" id="M_MAM02672e" name="PA6" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C90H145N6O65X">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02672e">
+            <rdf:Description rdf:about="#M_MAM02672e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/s2l2fn2m2masn"/>
@@ -74562,10 +74598,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM02673c" sboTerm="SBO:0000247" id="MAM02673c" name="paclitaxel" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C47H31NO14">
+      <species metaid="M_MAM02673c" sboTerm="SBO:0000247" id="M_MAM02673c" name="paclitaxel" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C47H31NO14">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02673c">
+            <rdf:Description rdf:about="#M_MAM02673c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/taxol"/>
@@ -74581,10 +74617,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02673e" sboTerm="SBO:0000247" id="MAM02673e" name="paclitaxel" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C47H31NO14">
+      <species metaid="M_MAM02673e" sboTerm="SBO:0000247" id="M_MAM02673e" name="paclitaxel" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C47H31NO14">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02673e">
+            <rdf:Description rdf:about="#M_MAM02673e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/taxol"/>
@@ -74600,10 +74636,10 @@
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         </annotation>
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-      <species metaid="MAM02674c" sboTerm="SBO:0000247" id="MAM02674c" name="palmitate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C16H31O2">
+      <species metaid="M_MAM02674c" sboTerm="SBO:0000247" id="M_MAM02674c" name="palmitate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C16H31O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02674c">
+            <rdf:Description rdf:about="#M_MAM02674c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hdca"/>
@@ -74620,10 +74656,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM02674l" sboTerm="SBO:0000247" id="MAM02674l" name="palmitate" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C16H31O2">
+      <species metaid="M_MAM02674l" sboTerm="SBO:0000247" id="M_MAM02674l" name="palmitate" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C16H31O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02674l">
+            <rdf:Description rdf:about="#M_MAM02674l">
               <bqbiol:is>
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                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hdca"/>
@@ -74640,10 +74676,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM02674x" sboTerm="SBO:0000247" id="MAM02674x" name="palmitate" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C16H31O2">
+      <species metaid="M_MAM02674x" sboTerm="SBO:0000247" id="M_MAM02674x" name="palmitate" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C16H31O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02674x">
+            <rdf:Description rdf:about="#M_MAM02674x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hdca"/>
@@ -74660,10 +74696,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM02674r" sboTerm="SBO:0000247" id="MAM02674r" name="palmitate" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C16H31O2">
+      <species metaid="M_MAM02674r" sboTerm="SBO:0000247" id="M_MAM02674r" name="palmitate" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C16H31O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02674r">
+            <rdf:Description rdf:about="#M_MAM02674r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hdca"/>
@@ -74680,10 +74716,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM02674e" sboTerm="SBO:0000247" id="MAM02674e" name="palmitate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C16H31O2">
+      <species metaid="M_MAM02674e" sboTerm="SBO:0000247" id="M_MAM02674e" name="palmitate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C16H31O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02674e">
+            <rdf:Description rdf:about="#M_MAM02674e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hdca"/>
@@ -74700,10 +74736,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02675c" sboTerm="SBO:0000247" id="MAM02675c" name="palmitolate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C16H29O2">
+      <species metaid="M_MAM02675c" sboTerm="SBO:0000247" id="M_MAM02675c" name="palmitolate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C16H29O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02675c">
+            <rdf:Description rdf:about="#M_MAM02675c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hdcea"/>
@@ -74720,10 +74756,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM02675l" sboTerm="SBO:0000247" id="MAM02675l" name="palmitolate" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C16H29O2">
+      <species metaid="M_MAM02675l" sboTerm="SBO:0000247" id="M_MAM02675l" name="palmitolate" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C16H29O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02675l">
+            <rdf:Description rdf:about="#M_MAM02675l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hdcea"/>
@@ -74740,10 +74776,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02675r" sboTerm="SBO:0000247" id="MAM02675r" name="palmitolate" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C16H29O2">
+      <species metaid="M_MAM02675r" sboTerm="SBO:0000247" id="M_MAM02675r" name="palmitolate" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C16H29O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02675r">
+            <rdf:Description rdf:about="#M_MAM02675r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hdcea"/>
@@ -74760,10 +74796,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02675e" sboTerm="SBO:0000247" id="MAM02675e" name="palmitolate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C16H29O2">
+      <species metaid="M_MAM02675e" sboTerm="SBO:0000247" id="M_MAM02675e" name="palmitolate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C16H29O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02675e">
+            <rdf:Description rdf:about="#M_MAM02675e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hdcea"/>
@@ -74780,10 +74816,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02676c" sboTerm="SBO:0000247" id="MAM02676c" name="palmitoleoyl-carnitine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H43NO4">
+      <species metaid="M_MAM02676c" sboTerm="SBO:0000247" id="M_MAM02676c" name="palmitoleoyl-carnitine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H43NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02676c">
+            <rdf:Description rdf:about="#M_MAM02676c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hdcecrn"/>
@@ -74797,10 +74833,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02676m" sboTerm="SBO:0000247" id="MAM02676m" name="palmitoleoyl-carnitine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H43NO4">
+      <species metaid="M_MAM02676m" sboTerm="SBO:0000247" id="M_MAM02676m" name="palmitoleoyl-carnitine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H43NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02676m">
+            <rdf:Description rdf:about="#M_MAM02676m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hdcecrn"/>
@@ -74814,10 +74850,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02676r" sboTerm="SBO:0000247" id="MAM02676r" name="palmitoleoyl-carnitine" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H43NO4">
+      <species metaid="M_MAM02676r" sboTerm="SBO:0000247" id="M_MAM02676r" name="palmitoleoyl-carnitine" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H43NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02676r">
+            <rdf:Description rdf:about="#M_MAM02676r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hdcecrn"/>
@@ -74831,10 +74867,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02677c" sboTerm="SBO:0000247" id="MAM02677c" name="palmitoleoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C37H60N7O17P3S">
+      <species metaid="M_MAM02677c" sboTerm="SBO:0000247" id="M_MAM02677c" name="palmitoleoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C37H60N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02677c">
+            <rdf:Description rdf:about="#M_MAM02677c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hdcoa"/>
@@ -74851,10 +74887,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02677m" sboTerm="SBO:0000247" id="MAM02677m" name="palmitoleoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C37H60N7O17P3S">
+      <species metaid="M_MAM02677m" sboTerm="SBO:0000247" id="M_MAM02677m" name="palmitoleoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C37H60N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02677m">
+            <rdf:Description rdf:about="#M_MAM02677m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hdcoa"/>
@@ -74871,10 +74907,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02677x" sboTerm="SBO:0000247" id="MAM02677x" name="palmitoleoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C37H60N7O17P3S">
+      <species metaid="M_MAM02677x" sboTerm="SBO:0000247" id="M_MAM02677x" name="palmitoleoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C37H60N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02677x">
+            <rdf:Description rdf:about="#M_MAM02677x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hdcoa"/>
@@ -74891,10 +74927,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02677r" sboTerm="SBO:0000247" id="MAM02677r" name="palmitoleoyl-CoA" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C37H60N7O17P3S">
+      <species metaid="M_MAM02677r" sboTerm="SBO:0000247" id="M_MAM02677r" name="palmitoleoyl-CoA" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C37H60N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02677r">
+            <rdf:Description rdf:about="#M_MAM02677r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hdcoa"/>
@@ -74911,10 +74947,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02678c" sboTerm="SBO:0000247" id="MAM02678c" name="palmitoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C37H62N7O17P3S">
+      <species metaid="M_MAM02678c" sboTerm="SBO:0000247" id="M_MAM02678c" name="palmitoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C37H62N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02678c">
+            <rdf:Description rdf:about="#M_MAM02678c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pmtcoa"/>
@@ -74931,10 +74967,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02678m" sboTerm="SBO:0000247" id="MAM02678m" name="palmitoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C37H62N7O17P3S">
+      <species metaid="M_MAM02678m" sboTerm="SBO:0000247" id="M_MAM02678m" name="palmitoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C37H62N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02678m">
+            <rdf:Description rdf:about="#M_MAM02678m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pmtcoa"/>
@@ -74951,10 +74987,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02678x" sboTerm="SBO:0000247" id="MAM02678x" name="palmitoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C37H62N7O17P3S">
+      <species metaid="M_MAM02678x" sboTerm="SBO:0000247" id="M_MAM02678x" name="palmitoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C37H62N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02678x">
+            <rdf:Description rdf:about="#M_MAM02678x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pmtcoa"/>
@@ -74971,10 +75007,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02678r" sboTerm="SBO:0000247" id="MAM02678r" name="palmitoyl-CoA" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C37H62N7O17P3S">
+      <species metaid="M_MAM02678r" sboTerm="SBO:0000247" id="M_MAM02678r" name="palmitoyl-CoA" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C37H62N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02678r">
+            <rdf:Description rdf:about="#M_MAM02678r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pmtcoa"/>
@@ -74991,10 +75027,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02679c" sboTerm="SBO:0000247" id="MAM02679c" name="pantetheine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C11H22N2O4S">
+      <species metaid="M_MAM02679c" sboTerm="SBO:0000247" id="M_MAM02679c" name="pantetheine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C11H22N2O4S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02679c">
+            <rdf:Description rdf:about="#M_MAM02679c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ptth"/>
@@ -75010,10 +75046,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02679m" sboTerm="SBO:0000247" id="MAM02679m" name="pantetheine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C11H22N2O4S">
+      <species metaid="M_MAM02679m" sboTerm="SBO:0000247" id="M_MAM02679m" name="pantetheine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C11H22N2O4S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02679m">
+            <rdf:Description rdf:about="#M_MAM02679m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ptth"/>
@@ -75029,10 +75065,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02680c" sboTerm="SBO:0000247" id="MAM02680c" name="pantothenate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C9H16NO5">
+      <species metaid="M_MAM02680c" sboTerm="SBO:0000247" id="M_MAM02680c" name="pantothenate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C9H16NO5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02680c">
+            <rdf:Description rdf:about="#M_MAM02680c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pnto__R"/>
@@ -75048,10 +75084,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02680e" sboTerm="SBO:0000247" id="MAM02680e" name="pantothenate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C9H16NO5">
+      <species metaid="M_MAM02680e" sboTerm="SBO:0000247" id="M_MAM02680e" name="pantothenate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C9H16NO5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02680e">
+            <rdf:Description rdf:about="#M_MAM02680e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pnto__R"/>
@@ -75067,10 +75103,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02681c" sboTerm="SBO:0000247" id="MAM02681c" name="PAP" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C10H11N5O10P2">
+      <species metaid="M_MAM02681c" sboTerm="SBO:0000247" id="M_MAM02681c" name="PAP" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C10H11N5O10P2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02681c">
+            <rdf:Description rdf:about="#M_MAM02681c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pap"/>
@@ -75086,10 +75122,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02681g" sboTerm="SBO:0000247" id="MAM02681g" name="PAP" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C10H11N5O10P2">
+      <species metaid="M_MAM02681g" sboTerm="SBO:0000247" id="M_MAM02681g" name="PAP" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C10H11N5O10P2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02681g">
+            <rdf:Description rdf:about="#M_MAM02681g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pap"/>
@@ -75105,10 +75141,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02681l" sboTerm="SBO:0000247" id="MAM02681l" name="PAP" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C10H11N5O10P2">
+      <species metaid="M_MAM02681l" sboTerm="SBO:0000247" id="M_MAM02681l" name="PAP" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C10H11N5O10P2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02681l">
+            <rdf:Description rdf:about="#M_MAM02681l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pap"/>
@@ -75124,10 +75160,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02682c" sboTerm="SBO:0000247" id="MAM02682c" name="PAPS" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C10H11N5O13P2S">
+      <species metaid="M_MAM02682c" sboTerm="SBO:0000247" id="M_MAM02682c" name="PAPS" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C10H11N5O13P2S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02682c">
+            <rdf:Description rdf:about="#M_MAM02682c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/paps"/>
@@ -75143,10 +75179,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02682g" sboTerm="SBO:0000247" id="MAM02682g" name="PAPS" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C10H11N5O13P2S">
+      <species metaid="M_MAM02682g" sboTerm="SBO:0000247" id="M_MAM02682g" name="PAPS" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C10H11N5O13P2S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02682g">
+            <rdf:Description rdf:about="#M_MAM02682g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/paps"/>
@@ -75162,10 +75198,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02682l" sboTerm="SBO:0000247" id="MAM02682l" name="PAPS" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C10H11N5O13P2S">
+      <species metaid="M_MAM02682l" sboTerm="SBO:0000247" id="M_MAM02682l" name="PAPS" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C10H11N5O13P2S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02682l">
+            <rdf:Description rdf:about="#M_MAM02682l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/paps"/>
@@ -75181,10 +75217,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02683c" sboTerm="SBO:0000247" id="MAM02683c" name="paragloboside" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C45H79N2O23R">
+      <species metaid="M_MAM02683c" sboTerm="SBO:0000247" id="M_MAM02683c" name="paragloboside" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C45H79N2O23R">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02683c">
+            <rdf:Description rdf:about="#M_MAM02683c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:17006"/>
@@ -75198,10 +75234,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02684c" sboTerm="SBO:0000247" id="MAM02684c" name="PC-LD pool" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H18NO8PR2">
+      <species metaid="M_MAM02684c" sboTerm="SBO:0000247" id="M_MAM02684c" name="PC-LD pool" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H18NO8PR2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02684c">
+            <rdf:Description rdf:about="#M_MAM02684c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pchol_hs"/>
@@ -75215,10 +75251,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02684g" sboTerm="SBO:0000247" id="MAM02684g" name="PC-LD pool" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H18NO8PR2">
+      <species metaid="M_MAM02684g" sboTerm="SBO:0000247" id="M_MAM02684g" name="PC-LD pool" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H18NO8PR2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02684g">
+            <rdf:Description rdf:about="#M_MAM02684g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pchol_hs"/>
@@ -75232,10 +75268,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02684l" sboTerm="SBO:0000247" id="MAM02684l" name="PC-LD pool" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H18NO8PR2">
+      <species metaid="M_MAM02684l" sboTerm="SBO:0000247" id="M_MAM02684l" name="PC-LD pool" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H18NO8PR2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02684l">
+            <rdf:Description rdf:about="#M_MAM02684l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pchol_hs"/>
@@ -75249,10 +75285,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02684r" sboTerm="SBO:0000247" id="MAM02684r" name="PC-LD pool" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H18NO8PR2">
+      <species metaid="M_MAM02684r" sboTerm="SBO:0000247" id="M_MAM02684r" name="PC-LD pool" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H18NO8PR2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02684r">
+            <rdf:Description rdf:about="#M_MAM02684r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pchol_hs"/>
@@ -75266,10 +75302,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02684e" sboTerm="SBO:0000247" id="MAM02684e" name="PC-LD pool" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H18NO8PR2">
+      <species metaid="M_MAM02684e" sboTerm="SBO:0000247" id="M_MAM02684e" name="PC-LD pool" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H18NO8PR2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02684e">
+            <rdf:Description rdf:about="#M_MAM02684e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pchol_hs"/>
@@ -75283,10 +75319,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02685c" sboTerm="SBO:0000247" id="MAM02685c" name="PE-LD pool" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H12NO8PR2">
+      <species metaid="M_MAM02685c" sboTerm="SBO:0000247" id="M_MAM02685c" name="PE-LD pool" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H12NO8PR2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02685c">
+            <rdf:Description rdf:about="#M_MAM02685c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pe_hs"/>
@@ -75301,10 +75337,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02685g" sboTerm="SBO:0000247" id="MAM02685g" name="PE-LD pool" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H12NO8PR2">
+      <species metaid="M_MAM02685g" sboTerm="SBO:0000247" id="M_MAM02685g" name="PE-LD pool" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H12NO8PR2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02685g">
+            <rdf:Description rdf:about="#M_MAM02685g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pe_hs"/>
@@ -75319,10 +75355,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM02685l" sboTerm="SBO:0000247" id="MAM02685l" name="PE-LD pool" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H12NO8PR2">
+      <species metaid="M_MAM02685l" sboTerm="SBO:0000247" id="M_MAM02685l" name="PE-LD pool" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H12NO8PR2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02685l">
+            <rdf:Description rdf:about="#M_MAM02685l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pe_hs"/>
@@ -75337,10 +75373,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM02685m" sboTerm="SBO:0000247" id="MAM02685m" name="PE-LD pool" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H12NO8PR2">
+      <species metaid="M_MAM02685m" sboTerm="SBO:0000247" id="M_MAM02685m" name="PE-LD pool" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H12NO8PR2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02685m">
+            <rdf:Description rdf:about="#M_MAM02685m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pe_hs"/>
@@ -75355,10 +75391,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02685r" sboTerm="SBO:0000247" id="MAM02685r" name="PE-LD pool" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H12NO8PR2">
+      <species metaid="M_MAM02685r" sboTerm="SBO:0000247" id="M_MAM02685r" name="PE-LD pool" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H12NO8PR2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02685r">
+            <rdf:Description rdf:about="#M_MAM02685r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pe_hs"/>
@@ -75373,10 +75409,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02685e" sboTerm="SBO:0000247" id="MAM02685e" name="PE-LD pool" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H12NO8PR2">
+      <species metaid="M_MAM02685e" sboTerm="SBO:0000247" id="M_MAM02685e" name="PE-LD pool" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H12NO8PR2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02685e">
+            <rdf:Description rdf:about="#M_MAM02685e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pe_hs"/>
@@ -75391,10 +75427,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02687c" sboTerm="SBO:0000247" id="MAM02687c" name="pentadecanoyl-[ACP]" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C26H49N2O8PRS">
+      <species metaid="M_MAM02687c" sboTerm="SBO:0000247" id="M_MAM02687c" name="pentadecanoyl-[ACP]" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C26H49N2O8PRS">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02687c">
+            <rdf:Description rdf:about="#M_MAM02687c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M02687"/>
@@ -75404,10 +75440,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02688c" sboTerm="SBO:0000247" id="MAM02688c" name="pentadecanoylcarnitine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C22H43NO4">
+      <species metaid="M_MAM02688c" sboTerm="SBO:0000247" id="M_MAM02688c" name="pentadecanoylcarnitine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C22H43NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02688c">
+            <rdf:Description rdf:about="#M_MAM02688c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ptdcacrn"/>
@@ -75419,10 +75455,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02688m" sboTerm="SBO:0000247" id="MAM02688m" name="pentadecanoylcarnitine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C22H43NO4">
+      <species metaid="M_MAM02688m" sboTerm="SBO:0000247" id="M_MAM02688m" name="pentadecanoylcarnitine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C22H43NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02688m">
+            <rdf:Description rdf:about="#M_MAM02688m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ptdcacrn"/>
@@ -75434,10 +75470,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02688r" sboTerm="SBO:0000247" id="MAM02688r" name="pentadecanoylcarnitine" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C22H43NO4">
+      <species metaid="M_MAM02688r" sboTerm="SBO:0000247" id="M_MAM02688r" name="pentadecanoylcarnitine" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C22H43NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02688r">
+            <rdf:Description rdf:about="#M_MAM02688r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ptdcacrn"/>
@@ -75449,10 +75485,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02689c" sboTerm="SBO:0000247" id="MAM02689c" name="pentadecanoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C36H60N7O17P3S">
+      <species metaid="M_MAM02689c" sboTerm="SBO:0000247" id="M_MAM02689c" name="pentadecanoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C36H60N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02689c">
+            <rdf:Description rdf:about="#M_MAM02689c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ptdcacoa"/>
@@ -75465,10 +75501,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02689m" sboTerm="SBO:0000247" id="MAM02689m" name="pentadecanoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C36H60N7O17P3S">
+      <species metaid="M_MAM02689m" sboTerm="SBO:0000247" id="M_MAM02689m" name="pentadecanoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C36H60N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02689m">
+            <rdf:Description rdf:about="#M_MAM02689m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ptdcacoa"/>
@@ -75481,10 +75517,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02689r" sboTerm="SBO:0000247" id="MAM02689r" name="pentadecanoyl-CoA" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C36H60N7O17P3S">
+      <species metaid="M_MAM02689r" sboTerm="SBO:0000247" id="M_MAM02689r" name="pentadecanoyl-CoA" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C36H60N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02689r">
+            <rdf:Description rdf:about="#M_MAM02689r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ptdcacoa"/>
@@ -75497,10 +75533,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02690c" sboTerm="SBO:0000247" id="MAM02690c" name="pentadecylic acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C15H29O2">
+      <species metaid="M_MAM02690c" sboTerm="SBO:0000247" id="M_MAM02690c" name="pentadecylic acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C15H29O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02690c">
+            <rdf:Description rdf:about="#M_MAM02690c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ptdca"/>
@@ -75517,10 +75553,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02690l" sboTerm="SBO:0000247" id="MAM02690l" name="pentadecylic acid" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C15H29O2">
+      <species metaid="M_MAM02690l" sboTerm="SBO:0000247" id="M_MAM02690l" name="pentadecylic acid" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C15H29O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02690l">
+            <rdf:Description rdf:about="#M_MAM02690l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ptdca"/>
@@ -75537,10 +75573,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02690r" sboTerm="SBO:0000247" id="MAM02690r" name="pentadecylic acid" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C15H29O2">
+      <species metaid="M_MAM02690r" sboTerm="SBO:0000247" id="M_MAM02690r" name="pentadecylic acid" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C15H29O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02690r">
+            <rdf:Description rdf:about="#M_MAM02690r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ptdca"/>
@@ -75557,10 +75593,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02690e" sboTerm="SBO:0000247" id="MAM02690e" name="pentadecylic acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C15H29O2">
+      <species metaid="M_MAM02690e" sboTerm="SBO:0000247" id="M_MAM02690e" name="pentadecylic acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C15H29O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02690e">
+            <rdf:Description rdf:about="#M_MAM02690e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ptdca"/>
@@ -75577,10 +75613,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02691c" sboTerm="SBO:0000247" id="MAM02691c" name="pentaglutamyl-folate(DHF)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-6" fbc:chemicalFormula="C39H43N11O18">
+      <species metaid="M_MAM02691c" sboTerm="SBO:0000247" id="M_MAM02691c" name="pentaglutamyl-folate(DHF)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-6" fbc:chemicalFormula="C39H43N11O18">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02691c">
+            <rdf:Description rdf:about="#M_MAM02691c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/5dhf"/>
@@ -75593,10 +75629,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02691l" sboTerm="SBO:0000247" id="MAM02691l" name="pentaglutamyl-folate(DHF)" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-6" fbc:chemicalFormula="C39H43N11O18">
+      <species metaid="M_MAM02691l" sboTerm="SBO:0000247" id="M_MAM02691l" name="pentaglutamyl-folate(DHF)" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-6" fbc:chemicalFormula="C39H43N11O18">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02691l">
+            <rdf:Description rdf:about="#M_MAM02691l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/5dhf"/>
@@ -75609,10 +75645,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02691m" sboTerm="SBO:0000247" id="MAM02691m" name="pentaglutamyl-folate(DHF)" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-6" fbc:chemicalFormula="C39H43N11O18">
+      <species metaid="M_MAM02691m" sboTerm="SBO:0000247" id="M_MAM02691m" name="pentaglutamyl-folate(DHF)" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-6" fbc:chemicalFormula="C39H43N11O18">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02691m">
+            <rdf:Description rdf:about="#M_MAM02691m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/5dhf"/>
@@ -75625,10 +75661,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02691e" sboTerm="SBO:0000247" id="MAM02691e" name="pentaglutamyl-folate(DHF)" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-6" fbc:chemicalFormula="C39H43N11O18">
+      <species metaid="M_MAM02691e" sboTerm="SBO:0000247" id="M_MAM02691e" name="pentaglutamyl-folate(DHF)" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-6" fbc:chemicalFormula="C39H43N11O18">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02691e">
+            <rdf:Description rdf:about="#M_MAM02691e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/5dhf"/>
@@ -75641,10 +75677,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02692c" sboTerm="SBO:0000247" id="MAM02692c" name="pentaglutamyl-folate(THF)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-6" fbc:chemicalFormula="C39H45N11O18">
+      <species metaid="M_MAM02692c" sboTerm="SBO:0000247" id="M_MAM02692c" name="pentaglutamyl-folate(THF)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-6" fbc:chemicalFormula="C39H45N11O18">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02692c">
+            <rdf:Description rdf:about="#M_MAM02692c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/5thf"/>
@@ -75656,10 +75692,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02692l" sboTerm="SBO:0000247" id="MAM02692l" name="pentaglutamyl-folate(THF)" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-6" fbc:chemicalFormula="C39H45N11O18">
+      <species metaid="M_MAM02692l" sboTerm="SBO:0000247" id="M_MAM02692l" name="pentaglutamyl-folate(THF)" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-6" fbc:chemicalFormula="C39H45N11O18">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02692l">
+            <rdf:Description rdf:about="#M_MAM02692l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/5thf"/>
@@ -75671,10 +75707,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02692m" sboTerm="SBO:0000247" id="MAM02692m" name="pentaglutamyl-folate(THF)" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-6" fbc:chemicalFormula="C39H45N11O18">
+      <species metaid="M_MAM02692m" sboTerm="SBO:0000247" id="M_MAM02692m" name="pentaglutamyl-folate(THF)" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-6" fbc:chemicalFormula="C39H45N11O18">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02692m">
+            <rdf:Description rdf:about="#M_MAM02692m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/5thf"/>
@@ -75686,10 +75722,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02692e" sboTerm="SBO:0000247" id="MAM02692e" name="pentaglutamyl-folate(THF)" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-6" fbc:chemicalFormula="C39H45N11O18">
+      <species metaid="M_MAM02692e" sboTerm="SBO:0000247" id="M_MAM02692e" name="pentaglutamyl-folate(THF)" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-6" fbc:chemicalFormula="C39H45N11O18">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02692e">
+            <rdf:Description rdf:about="#M_MAM02692e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/5thf"/>
@@ -75701,10 +75737,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02693c" sboTerm="SBO:0000247" id="MAM02693c" name="pentanoyl-[ACP]" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C16H29N2O8PRS">
+      <species metaid="M_MAM02693c" sboTerm="SBO:0000247" id="M_MAM02693c" name="pentanoyl-[ACP]" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C16H29N2O8PRS">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02693c">
+            <rdf:Description rdf:about="#M_MAM02693c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M02693"/>
@@ -75714,10 +75750,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02694c" sboTerm="SBO:0000247" id="MAM02694c" name="pentanoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C26H40N7O17P3S">
+      <species metaid="M_MAM02694c" sboTerm="SBO:0000247" id="M_MAM02694c" name="pentanoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C26H40N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02694c">
+            <rdf:Description rdf:about="#M_MAM02694c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pentcoa"/>
@@ -75735,10 +75771,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02694m" sboTerm="SBO:0000247" id="MAM02694m" name="pentanoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C26H40N7O17P3S">
+      <species metaid="M_MAM02694m" sboTerm="SBO:0000247" id="M_MAM02694m" name="pentanoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C26H40N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02694m">
+            <rdf:Description rdf:about="#M_MAM02694m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pentcoa"/>
@@ -75756,10 +75792,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02695c" sboTerm="SBO:0000247" id="MAM02695c" name="pentyl radical" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H11">
+      <species metaid="M_MAM02695c" sboTerm="SBO:0000247" id="M_MAM02695c" name="pentyl radical" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H11">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02695c">
+            <rdf:Description rdf:about="#M_MAM02695c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/pubchem.compound/123167"/>
@@ -75770,10 +75806,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02696c" sboTerm="SBO:0000247" id="MAM02696c" name="PEP" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C3H2O6P">
+      <species metaid="M_MAM02696c" sboTerm="SBO:0000247" id="M_MAM02696c" name="PEP" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C3H2O6P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02696c">
+            <rdf:Description rdf:about="#M_MAM02696c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pep"/>
@@ -75789,10 +75825,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02696m" sboTerm="SBO:0000247" id="MAM02696m" name="PEP" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C3H2O6P">
+      <species metaid="M_MAM02696m" sboTerm="SBO:0000247" id="M_MAM02696m" name="PEP" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C3H2O6P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02696m">
+            <rdf:Description rdf:about="#M_MAM02696m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pep"/>
@@ -75808,10 +75844,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02697c" sboTerm="SBO:0000247" id="MAM02697c" name="PE-PS-LD pool" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H12NO8PR2">
+      <species metaid="M_MAM02697c" sboTerm="SBO:0000247" id="M_MAM02697c" name="PE-PS-LD pool" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H12NO8PR2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02697c">
+            <rdf:Description rdf:about="#M_MAM02697c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/HC02079"/>
@@ -75821,10 +75857,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02699c" sboTerm="SBO:0000247" id="MAM02699c" name="peptide-2-(3-carboxy-3-aminopropyl)-L-histidine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C11H15N5O4R2">
+      <species metaid="M_MAM02699c" sboTerm="SBO:0000247" id="M_MAM02699c" name="peptide-2-(3-carboxy-3-aminopropyl)-L-histidine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C11H15N5O4R2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02699c">
+            <rdf:Description rdf:about="#M_MAM02699c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:17144"/>
@@ -75837,10 +75873,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02700c" sboTerm="SBO:0000247" id="MAM02700c" name="peptide-2-[3-carboxy-3-(methylammonio)propyl]-L-histidine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C12H17N5O4R2">
+      <species metaid="M_MAM02700c" sboTerm="SBO:0000247" id="M_MAM02700c" name="peptide-2-[3-carboxy-3-(methylammonio)propyl]-L-histidine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C12H17N5O4R2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02700c">
+            <rdf:Description rdf:about="#M_MAM02700c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:16475"/>
@@ -75853,10 +75889,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02701c" sboTerm="SBO:0000247" id="MAM02701c" name="peptide-3-hydroxy-L-aspartate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H6N2O5R2">
+      <species metaid="M_MAM02701c" sboTerm="SBO:0000247" id="M_MAM02701c" name="peptide-3-hydroxy-L-aspartate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H6N2O5R2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02701c">
+            <rdf:Description rdf:about="#M_MAM02701c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C03957"/>
@@ -75868,10 +75904,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02702c" sboTerm="SBO:0000247" id="MAM02702c" name="peptide-L-aspartate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H6N2O4R2">
+      <species metaid="M_MAM02702c" sboTerm="SBO:0000247" id="M_MAM02702c" name="peptide-L-aspartate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H6N2O4R2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02702c">
+            <rdf:Description rdf:about="#M_MAM02702c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C02871"/>
@@ -75883,10 +75919,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02703c" sboTerm="SBO:0000247" id="MAM02703c" name="peptide-L-methionine-(S)-S-oxide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H10N2O3SR2">
+      <species metaid="M_MAM02703c" sboTerm="SBO:0000247" id="M_MAM02703c" name="peptide-L-methionine-(S)-S-oxide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H10N2O3SR2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02703c">
+            <rdf:Description rdf:about="#M_MAM02703c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:15989"/>
@@ -75899,10 +75935,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02704c" sboTerm="SBO:0000247" id="MAM02704c" name="peptide-L-methionine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H10N2O2SR2">
+      <species metaid="M_MAM02704c" sboTerm="SBO:0000247" id="M_MAM02704c" name="peptide-L-methionine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H10N2O2SR2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02704c">
+            <rdf:Description rdf:about="#M_MAM02704c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:16044"/>
@@ -75915,10 +75951,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02705c" sboTerm="SBO:0000247" id="MAM02705c" name="peptidyl-allysyl-peptide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H10N2O3R2">
+      <species metaid="M_MAM02705c" sboTerm="SBO:0000247" id="M_MAM02705c" name="peptidyl-allysyl-peptide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H10N2O3R2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02705c">
+            <rdf:Description rdf:about="#M_MAM02705c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C03531"/>
@@ -75930,10 +75966,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02706c" sboTerm="SBO:0000247" id="MAM02706c" name="peptidylamidoglycolate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H9N3O5R2">
+      <species metaid="M_MAM02706c" sboTerm="SBO:0000247" id="M_MAM02706c" name="peptidylamidoglycolate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H9N3O5R2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02706c">
+            <rdf:Description rdf:about="#M_MAM02706c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C03303"/>
@@ -75945,10 +75981,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02707c" sboTerm="SBO:0000247" id="MAM02707c" name="peptidylglycine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H9N3O4R2">
+      <species metaid="M_MAM02707c" sboTerm="SBO:0000247" id="M_MAM02707c" name="peptidylglycine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H9N3O4R2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02707c">
+            <rdf:Description rdf:about="#M_MAM02707c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C02303"/>
@@ -75960,10 +75996,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02708c" sboTerm="SBO:0000247" id="MAM02708c" name="peptidyl-L-lysyl-peptide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C7H14N3O2R2">
+      <species metaid="M_MAM02708c" sboTerm="SBO:0000247" id="M_MAM02708c" name="peptidyl-L-lysyl-peptide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C7H14N3O2R2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02708c">
+            <rdf:Description rdf:about="#M_MAM02708c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C03530"/>
@@ -75975,10 +76011,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02709c" sboTerm="SBO:0000247" id="MAM02709c" name="peptidylproline-(omega=0)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H8N2O2R2">
+      <species metaid="M_MAM02709c" sboTerm="SBO:0000247" id="M_MAM02709c" name="peptidylproline-(omega=0)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H8N2O2R2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02709c">
+            <rdf:Description rdf:about="#M_MAM02709c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C03633"/>
@@ -75990,10 +76026,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02710c" sboTerm="SBO:0000247" id="MAM02710c" name="peptidylproline-(omega=180)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H8N2O2R2">
+      <species metaid="M_MAM02710c" sboTerm="SBO:0000247" id="M_MAM02710c" name="peptidylproline-(omega=180)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H8N2O2R2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02710c">
+            <rdf:Description rdf:about="#M_MAM02710c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:15701"/>
@@ -76006,10 +76042,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02711c" sboTerm="SBO:0000247" id="MAM02711c" name="perillic acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H13O2">
+      <species metaid="M_MAM02711c" sboTerm="SBO:0000247" id="M_MAM02711c" name="perillic acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H13O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02711c">
+            <rdf:Description rdf:about="#M_MAM02711c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/peracd"/>
@@ -76025,10 +76061,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02711m" sboTerm="SBO:0000247" id="MAM02711m" name="perillic acid" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H13O2">
+      <species metaid="M_MAM02711m" sboTerm="SBO:0000247" id="M_MAM02711m" name="perillic acid" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H13O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02711m">
+            <rdf:Description rdf:about="#M_MAM02711m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/peracd"/>
@@ -76044,10 +76080,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02712c" sboTerm="SBO:0000247" id="MAM02712c" name="perillyl alcohol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H16O">
+      <species metaid="M_MAM02712c" sboTerm="SBO:0000247" id="M_MAM02712c" name="perillyl alcohol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H16O">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02712c">
+            <rdf:Description rdf:about="#M_MAM02712c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/perillyl"/>
@@ -76063,10 +76099,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02712e" sboTerm="SBO:0000247" id="MAM02712e" name="perillyl alcohol" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H16O">
+      <species metaid="M_MAM02712e" sboTerm="SBO:0000247" id="M_MAM02712e" name="perillyl alcohol" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H16O">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02712e">
+            <rdf:Description rdf:about="#M_MAM02712e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/perillyl"/>
@@ -76082,10 +76118,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02713c" sboTerm="SBO:0000247" id="MAM02713c" name="perillyl aldehyde" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H14O">
+      <species metaid="M_MAM02713c" sboTerm="SBO:0000247" id="M_MAM02713c" name="perillyl aldehyde" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H14O">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02713c">
+            <rdf:Description rdf:about="#M_MAM02713c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pylald"/>
@@ -76101,10 +76137,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02713m" sboTerm="SBO:0000247" id="MAM02713m" name="perillyl aldehyde" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H14O">
+      <species metaid="M_MAM02713m" sboTerm="SBO:0000247" id="M_MAM02713m" name="perillyl aldehyde" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H14O">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02713m">
+            <rdf:Description rdf:about="#M_MAM02713m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pylald"/>
@@ -76120,10 +76156,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02714c" sboTerm="SBO:0000247" id="MAM02714c" name="peroxynitrite" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="NO3">
+      <species metaid="M_MAM02714c" sboTerm="SBO:0000247" id="M_MAM02714c" name="peroxynitrite" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="NO3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02714c">
+            <rdf:Description rdf:about="#M_MAM02714c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:25941"/>
@@ -76138,10 +76174,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02715m" sboTerm="SBO:0000247" id="MAM02715m" name="PG-CL pool" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C8H12O10PR2">
+      <species metaid="M_MAM02715m" sboTerm="SBO:0000247" id="M_MAM02715m" name="PG-CL pool" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C8H12O10PR2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02715m">
+            <rdf:Description rdf:about="#M_MAM02715m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pglyc_hs"/>
@@ -76155,10 +76191,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02716c" sboTerm="SBO:0000247" id="MAM02716c" name="PGH3" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H29O5">
+      <species metaid="M_MAM02716c" sboTerm="SBO:0000247" id="M_MAM02716c" name="PGH3" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H29O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02716c">
+            <rdf:Description rdf:about="#M_MAM02716c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM74716"/>
@@ -76170,10 +76206,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02716n" sboTerm="SBO:0000247" id="MAM02716n" name="PGH3" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H29O5">
+      <species metaid="M_MAM02716n" sboTerm="SBO:0000247" id="M_MAM02716n" name="PGH3" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H29O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02716n">
+            <rdf:Description rdf:about="#M_MAM02716n">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM74716"/>
@@ -76185,10 +76221,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02717m" sboTerm="SBO:0000247" id="MAM02717m" name="PGP-CL pool" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C8H11O13P2R2">
+      <species metaid="M_MAM02717m" sboTerm="SBO:0000247" id="M_MAM02717m" name="PGP-CL pool" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C8H11O13P2R2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02717m">
+            <rdf:Description rdf:about="#M_MAM02717m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pgp_hs"/>
@@ -76202,10 +76238,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02718c" sboTerm="SBO:0000247" id="MAM02718c" name="phenethylamine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C8H12N">
+      <species metaid="M_MAM02718c" sboTerm="SBO:0000247" id="M_MAM02718c" name="phenethylamine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C8H12N">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02718c">
+            <rdf:Description rdf:about="#M_MAM02718c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/peamn"/>
@@ -76220,10 +76256,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02719c" sboTerm="SBO:0000247" id="MAM02719c" name="phenylacetaldehyde" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H8O">
+      <species metaid="M_MAM02719c" sboTerm="SBO:0000247" id="M_MAM02719c" name="phenylacetaldehyde" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H8O">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02719c">
+            <rdf:Description rdf:about="#M_MAM02719c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pacald"/>
@@ -76238,10 +76274,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02719m" sboTerm="SBO:0000247" id="MAM02719m" name="phenylacetaldehyde" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H8O">
+      <species metaid="M_MAM02719m" sboTerm="SBO:0000247" id="M_MAM02719m" name="phenylacetaldehyde" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H8O">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02719m">
+            <rdf:Description rdf:about="#M_MAM02719m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pacald"/>
@@ -76256,10 +76292,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02720c" sboTerm="SBO:0000247" id="MAM02720c" name="phenylacetate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C8H7O2">
+      <species metaid="M_MAM02720c" sboTerm="SBO:0000247" id="M_MAM02720c" name="phenylacetate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C8H7O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02720c">
+            <rdf:Description rdf:about="#M_MAM02720c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pac"/>
@@ -76275,10 +76311,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02720m" sboTerm="SBO:0000247" id="MAM02720m" name="phenylacetate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C8H7O2">
+      <species metaid="M_MAM02720m" sboTerm="SBO:0000247" id="M_MAM02720m" name="phenylacetate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C8H7O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02720m">
+            <rdf:Description rdf:about="#M_MAM02720m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pac"/>
@@ -76294,10 +76330,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02721c" sboTerm="SBO:0000247" id="MAM02721c" name="phenylacetyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C29H38N7O17P3S">
+      <species metaid="M_MAM02721c" sboTerm="SBO:0000247" id="M_MAM02721c" name="phenylacetyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C29H38N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02721c">
+            <rdf:Description rdf:about="#M_MAM02721c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/phaccoa"/>
@@ -76313,10 +76349,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02722c" sboTerm="SBO:0000247" id="MAM02722c" name="phenylacetylglutamine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C13H16N2O4">
+      <species metaid="M_MAM02722c" sboTerm="SBO:0000247" id="M_MAM02722c" name="phenylacetylglutamine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C13H16N2O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02722c">
+            <rdf:Description rdf:about="#M_MAM02722c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pheacgln"/>
@@ -76332,10 +76368,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02722e" sboTerm="SBO:0000247" id="MAM02722e" name="phenylacetylglutamine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C13H16N2O4">
+      <species metaid="M_MAM02722e" sboTerm="SBO:0000247" id="M_MAM02722e" name="phenylacetylglutamine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C13H16N2O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02722e">
+            <rdf:Description rdf:about="#M_MAM02722e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pheacgln"/>
@@ -76351,10 +76387,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02723c" sboTerm="SBO:0000247" id="MAM02723c" name="phenylacetylglycine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H10NO3">
+      <species metaid="M_MAM02723c" sboTerm="SBO:0000247" id="M_MAM02723c" name="phenylacetylglycine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H10NO3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02723c">
+            <rdf:Description rdf:about="#M_MAM02723c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pheacgly"/>
@@ -76369,10 +76405,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02723e" sboTerm="SBO:0000247" id="MAM02723e" name="phenylacetylglycine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H10NO3">
+      <species metaid="M_MAM02723e" sboTerm="SBO:0000247" id="M_MAM02723e" name="phenylacetylglycine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H10NO3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02723e">
+            <rdf:Description rdf:about="#M_MAM02723e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pheacgly"/>
@@ -76387,10 +76423,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02724c" sboTerm="SBO:0000247" id="MAM02724c" name="phenylalanine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H11NO2">
+      <species metaid="M_MAM02724c" sboTerm="SBO:0000247" id="M_MAM02724c" name="phenylalanine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H11NO2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02724c">
+            <rdf:Description rdf:about="#M_MAM02724c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/phe__L"/>
@@ -76406,10 +76442,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02724l" sboTerm="SBO:0000247" id="MAM02724l" name="phenylalanine" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H11NO2">
+      <species metaid="M_MAM02724l" sboTerm="SBO:0000247" id="M_MAM02724l" name="phenylalanine" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H11NO2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02724l">
+            <rdf:Description rdf:about="#M_MAM02724l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/phe__L"/>
@@ -76425,10 +76461,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02724m" sboTerm="SBO:0000247" id="MAM02724m" name="phenylalanine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H11NO2">
+      <species metaid="M_MAM02724m" sboTerm="SBO:0000247" id="M_MAM02724m" name="phenylalanine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H11NO2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02724m">
+            <rdf:Description rdf:about="#M_MAM02724m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/phe__L"/>
@@ -76444,10 +76480,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02724e" sboTerm="SBO:0000247" id="MAM02724e" name="phenylalanine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H11NO2">
+      <species metaid="M_MAM02724e" sboTerm="SBO:0000247" id="M_MAM02724e" name="phenylalanine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H11NO2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02724e">
+            <rdf:Description rdf:about="#M_MAM02724e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/phe__L"/>
@@ -76463,10 +76499,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02725c" sboTerm="SBO:0000247" id="MAM02725c" name="phenylpyruvate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C9H7O3">
+      <species metaid="M_MAM02725c" sboTerm="SBO:0000247" id="M_MAM02725c" name="phenylpyruvate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C9H7O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02725c">
+            <rdf:Description rdf:about="#M_MAM02725c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/phpyr"/>
@@ -76483,10 +76519,10 @@
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         </annotation>
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-      <species metaid="MAM02726c" sboTerm="SBO:0000247" id="MAM02726c" name="phosphatidate-bile-PC pool" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C5H5O8PR2">
+      <species metaid="M_MAM02726c" sboTerm="SBO:0000247" id="M_MAM02726c" name="phosphatidate-bile-PC pool" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C5H5O8PR2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02726c">
+            <rdf:Description rdf:about="#M_MAM02726c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:16337"/>
@@ -76500,10 +76536,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM02727m" sboTerm="SBO:0000247" id="MAM02727m" name="phosphatidate-CL pool" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C5H5O8PR2">
+      <species metaid="M_MAM02727m" sboTerm="SBO:0000247" id="M_MAM02727m" name="phosphatidate-CL pool" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C5H5O8PR2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02727m">
+            <rdf:Description rdf:about="#M_MAM02727m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:16337"/>
@@ -76517,10 +76553,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02728c" sboTerm="SBO:0000247" id="MAM02728c" name="phosphatidate-LD-PC pool" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C5H5O8PR2">
+      <species metaid="M_MAM02728c" sboTerm="SBO:0000247" id="M_MAM02728c" name="phosphatidate-LD-PC pool" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C5H5O8PR2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02728c">
+            <rdf:Description rdf:about="#M_MAM02728c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:16337"/>
@@ -76534,10 +76570,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02728g" sboTerm="SBO:0000247" id="MAM02728g" name="phosphatidate-LD-PC pool" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C5H5O8PR2">
+      <species metaid="M_MAM02728g" sboTerm="SBO:0000247" id="M_MAM02728g" name="phosphatidate-LD-PC pool" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C5H5O8PR2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02728g">
+            <rdf:Description rdf:about="#M_MAM02728g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:16337"/>
@@ -76551,10 +76587,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02728r" sboTerm="SBO:0000247" id="MAM02728r" name="phosphatidate-LD-PC pool" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C5H5O8PR2">
+      <species metaid="M_MAM02728r" sboTerm="SBO:0000247" id="M_MAM02728r" name="phosphatidate-LD-PC pool" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C5H5O8PR2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02728r">
+            <rdf:Description rdf:about="#M_MAM02728r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:16337"/>
@@ -76568,10 +76604,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02729c" sboTerm="SBO:0000247" id="MAM02729c" name="phosphatidate-LD-PE pool" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C5H5O8PR2">
+      <species metaid="M_MAM02729c" sboTerm="SBO:0000247" id="M_MAM02729c" name="phosphatidate-LD-PE pool" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C5H5O8PR2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02729c">
+            <rdf:Description rdf:about="#M_MAM02729c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:16337"/>
@@ -76585,10 +76621,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02730c" sboTerm="SBO:0000247" id="MAM02730c" name="phosphatidate-LD-PI pool" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C5H5O8PR2">
+      <species metaid="M_MAM02730c" sboTerm="SBO:0000247" id="M_MAM02730c" name="phosphatidate-LD-PI pool" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C5H5O8PR2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02730c">
+            <rdf:Description rdf:about="#M_MAM02730c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:16337"/>
@@ -76602,10 +76638,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02731c" sboTerm="SBO:0000247" id="MAM02731c" name="phosphatidate-LD-PS pool" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C5H5O8PR2">
+      <species metaid="M_MAM02731c" sboTerm="SBO:0000247" id="M_MAM02731c" name="phosphatidate-LD-PS pool" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C5H5O8PR2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02731c">
+            <rdf:Description rdf:about="#M_MAM02731c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:16337"/>
@@ -76619,10 +76655,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02732c" sboTerm="SBO:0000247" id="MAM02732c" name="phosphatidate-LD-SM pool" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C5H5O8PR2">
+      <species metaid="M_MAM02732c" sboTerm="SBO:0000247" id="M_MAM02732c" name="phosphatidate-LD-SM pool" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C5H5O8PR2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02732c">
+            <rdf:Description rdf:about="#M_MAM02732c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:16337"/>
@@ -76636,10 +76672,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02733c" sboTerm="SBO:0000247" id="MAM02733c" name="phosphatidate-LD-TAG pool" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C5H5O8PR2">
+      <species metaid="M_MAM02733c" sboTerm="SBO:0000247" id="M_MAM02733c" name="phosphatidate-LD-TAG pool" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C5H5O8PR2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02733c">
+            <rdf:Description rdf:about="#M_MAM02733c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pa_hs"/>
@@ -76654,10 +76690,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02733r" sboTerm="SBO:0000247" id="MAM02733r" name="phosphatidate-LD-TAG pool" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C5H5O8PR2">
+      <species metaid="M_MAM02733r" sboTerm="SBO:0000247" id="M_MAM02733r" name="phosphatidate-LD-TAG pool" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C5H5O8PR2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02733r">
+            <rdf:Description rdf:about="#M_MAM02733r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pa_hs"/>
@@ -76672,10 +76708,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02734c" sboTerm="SBO:0000247" id="MAM02734c" name="phosphatidylinositol-3,4,5-trisphosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-7" fbc:chemicalFormula="C11H13O22P4R2">
+      <species metaid="M_MAM02734c" sboTerm="SBO:0000247" id="M_MAM02734c" name="phosphatidylinositol-3,4,5-trisphosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-7" fbc:chemicalFormula="C11H13O22P4R2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02734c">
+            <rdf:Description rdf:about="#M_MAM02734c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pail345p_hs"/>
@@ -76689,10 +76725,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02734n" sboTerm="SBO:0000247" id="MAM02734n" name="phosphatidylinositol-3,4,5-trisphosphate" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-7" fbc:chemicalFormula="C11H13O22P4R2">
+      <species metaid="M_MAM02734n" sboTerm="SBO:0000247" id="M_MAM02734n" name="phosphatidylinositol-3,4,5-trisphosphate" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-7" fbc:chemicalFormula="C11H13O22P4R2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02734n">
+            <rdf:Description rdf:about="#M_MAM02734n">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pail345p_hs"/>
@@ -76706,10 +76742,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02735c" sboTerm="SBO:0000247" id="MAM02735c" name="phosphatidylinositol-3,5-bisphosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C11H14O19P3R2">
+      <species metaid="M_MAM02735c" sboTerm="SBO:0000247" id="M_MAM02735c" name="phosphatidylinositol-3,5-bisphosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C11H14O19P3R2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02735c">
+            <rdf:Description rdf:about="#M_MAM02735c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pail35p_hs"/>
@@ -76723,10 +76759,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02735r" sboTerm="SBO:0000247" id="MAM02735r" name="phosphatidylinositol-3,5-bisphosphate" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C11H14O19P3R2">
+      <species metaid="M_MAM02735r" sboTerm="SBO:0000247" id="M_MAM02735r" name="phosphatidylinositol-3,5-bisphosphate" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C11H14O19P3R2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02735r">
+            <rdf:Description rdf:about="#M_MAM02735r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pail35p_hs"/>
@@ -76740,10 +76776,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02736c" sboTerm="SBO:0000247" id="MAM02736c" name="phosphatidylinositol-4,5-bisphosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C11H14O19P3R2">
+      <species metaid="M_MAM02736c" sboTerm="SBO:0000247" id="M_MAM02736c" name="phosphatidylinositol-4,5-bisphosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C11H14O19P3R2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02736c">
+            <rdf:Description rdf:about="#M_MAM02736c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pail45p_hs"/>
@@ -76757,10 +76793,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02736n" sboTerm="SBO:0000247" id="MAM02736n" name="phosphatidylinositol-4,5-bisphosphate" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C11H14O19P3R2">
+      <species metaid="M_MAM02736n" sboTerm="SBO:0000247" id="M_MAM02736n" name="phosphatidylinositol-4,5-bisphosphate" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C11H14O19P3R2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02736n">
+            <rdf:Description rdf:about="#M_MAM02736n">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pail45p_hs"/>
@@ -76774,10 +76810,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02737c" sboTerm="SBO:0000247" id="MAM02737c" name="phospho-[beta adrenergic receptor]" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H7N2O6PR2">
+      <species metaid="M_MAM02737c" sboTerm="SBO:0000247" id="M_MAM02737c" name="phospho-[beta adrenergic receptor]" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H7N2O6PR2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02737c">
+            <rdf:Description rdf:about="#M_MAM02737c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C04141"/>
@@ -76789,10 +76825,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02738c" sboTerm="SBO:0000247" id="MAM02738c" name="phosphocholine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C5H13NO4P">
+      <species metaid="M_MAM02738c" sboTerm="SBO:0000247" id="M_MAM02738c" name="phosphocholine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C5H13NO4P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02738c">
+            <rdf:Description rdf:about="#M_MAM02738c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/cholp"/>
@@ -76808,10 +76844,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02738g" sboTerm="SBO:0000247" id="MAM02738g" name="phosphocholine" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C5H13NO4P">
+      <species metaid="M_MAM02738g" sboTerm="SBO:0000247" id="M_MAM02738g" name="phosphocholine" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C5H13NO4P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02738g">
+            <rdf:Description rdf:about="#M_MAM02738g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/cholp"/>
@@ -76827,10 +76863,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02738l" sboTerm="SBO:0000247" id="MAM02738l" name="phosphocholine" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C5H13NO4P">
+      <species metaid="M_MAM02738l" sboTerm="SBO:0000247" id="M_MAM02738l" name="phosphocholine" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C5H13NO4P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02738l">
+            <rdf:Description rdf:about="#M_MAM02738l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/cholp"/>
@@ -76846,10 +76882,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02739c" sboTerm="SBO:0000247" id="MAM02739c" name="phosphodimethylethanolamine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C4H10NO4P">
+      <species metaid="M_MAM02739c" sboTerm="SBO:0000247" id="M_MAM02739c" name="phosphodimethylethanolamine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C4H10NO4P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02739c">
+            <rdf:Description rdf:about="#M_MAM02739c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:31997"/>
@@ -76863,10 +76899,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02740e" sboTerm="SBO:0000247" id="MAM02740e" name="phospholipids extracellular pool" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C5H5O8PR3">
+      <species metaid="M_MAM02740e" sboTerm="SBO:0000247" id="M_MAM02740e" name="phospholipids extracellular pool" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C5H5O8PR3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02740e">
+            <rdf:Description rdf:about="#M_MAM02740e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:16247"/>
@@ -76880,10 +76916,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02741c" sboTerm="SBO:0000247" id="MAM02741c" name="phosphopantetheine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C11H21N2O7PS">
+      <species metaid="M_MAM02741c" sboTerm="SBO:0000247" id="M_MAM02741c" name="phosphopantetheine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C11H21N2O7PS">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02741c">
+            <rdf:Description rdf:about="#M_MAM02741c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pan4p"/>
@@ -76898,10 +76934,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02741m" sboTerm="SBO:0000247" id="MAM02741m" name="phosphopantetheine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C11H21N2O7PS">
+      <species metaid="M_MAM02741m" sboTerm="SBO:0000247" id="M_MAM02741m" name="phosphopantetheine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C11H21N2O7PS">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02741m">
+            <rdf:Description rdf:about="#M_MAM02741m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pan4p"/>
@@ -76916,10 +76952,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02743c" sboTerm="SBO:0000247" id="MAM02743c" name="phosphorhodopsin" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H28O3PR">
+      <species metaid="M_MAM02743c" sboTerm="SBO:0000247" id="M_MAM02743c" name="phosphorhodopsin" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H28O3PR">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02743c">
+            <rdf:Description rdf:about="#M_MAM02743c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C02456"/>
@@ -76931,10 +76967,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02744c" sboTerm="SBO:0000247" id="MAM02744c" name="phylloquinone" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C31H46O2">
+      <species metaid="M_MAM02744c" sboTerm="SBO:0000247" id="M_MAM02744c" name="phylloquinone" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C31H46O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02744c">
+            <rdf:Description rdf:about="#M_MAM02744c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/phllqne"/>
@@ -76951,10 +76987,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02744e" sboTerm="SBO:0000247" id="MAM02744e" name="phylloquinone" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C31H46O2">
+      <species metaid="M_MAM02744e" sboTerm="SBO:0000247" id="M_MAM02744e" name="phylloquinone" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C31H46O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02744e">
+            <rdf:Description rdf:about="#M_MAM02744e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/phllqne"/>
@@ -76971,10 +77007,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02745c" sboTerm="SBO:0000247" id="MAM02745c" name="physeteric acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C14H25O2">
+      <species metaid="M_MAM02745c" sboTerm="SBO:0000247" id="M_MAM02745c" name="physeteric acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C14H25O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02745c">
+            <rdf:Description rdf:about="#M_MAM02745c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/hmdb/HMDB00521"/>
@@ -76989,10 +77025,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02745l" sboTerm="SBO:0000247" id="MAM02745l" name="physeteric acid" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C14H25O2">
+      <species metaid="M_MAM02745l" sboTerm="SBO:0000247" id="M_MAM02745l" name="physeteric acid" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C14H25O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02745l">
+            <rdf:Description rdf:about="#M_MAM02745l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/hmdb/HMDB00521"/>
@@ -77007,10 +77043,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02745r" sboTerm="SBO:0000247" id="MAM02745r" name="physeteric acid" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C14H25O2">
+      <species metaid="M_MAM02745r" sboTerm="SBO:0000247" id="M_MAM02745r" name="physeteric acid" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C14H25O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02745r">
+            <rdf:Description rdf:about="#M_MAM02745r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/hmdb/HMDB00521"/>
@@ -77025,10 +77061,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02745e" sboTerm="SBO:0000247" id="MAM02745e" name="physeteric acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C14H25O2">
+      <species metaid="M_MAM02745e" sboTerm="SBO:0000247" id="M_MAM02745e" name="physeteric acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C14H25O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02745e">
+            <rdf:Description rdf:about="#M_MAM02745e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/hmdb/HMDB00521"/>
@@ -77043,10 +77079,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02746c" sboTerm="SBO:0000247" id="MAM02746c" name="phytanic acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H39O2">
+      <species metaid="M_MAM02746c" sboTerm="SBO:0000247" id="M_MAM02746c" name="phytanic acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H39O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02746c">
+            <rdf:Description rdf:about="#M_MAM02746c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/phyt"/>
@@ -77064,10 +77100,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02746x" sboTerm="SBO:0000247" id="MAM02746x" name="phytanic acid" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H39O2">
+      <species metaid="M_MAM02746x" sboTerm="SBO:0000247" id="M_MAM02746x" name="phytanic acid" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H39O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02746x">
+            <rdf:Description rdf:about="#M_MAM02746x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/phyt"/>
@@ -77085,10 +77121,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02746e" sboTerm="SBO:0000247" id="MAM02746e" name="phytanic acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H39O2">
+      <species metaid="M_MAM02746e" sboTerm="SBO:0000247" id="M_MAM02746e" name="phytanic acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H39O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02746e">
+            <rdf:Description rdf:about="#M_MAM02746e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/phyt"/>
@@ -77106,10 +77142,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02747c" sboTerm="SBO:0000247" id="MAM02747c" name="phytanoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H70N7O17P3S">
+      <species metaid="M_MAM02747c" sboTerm="SBO:0000247" id="M_MAM02747c" name="phytanoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H70N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02747c">
+            <rdf:Description rdf:about="#M_MAM02747c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/phytcoa"/>
@@ -77125,10 +77161,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02747x" sboTerm="SBO:0000247" id="MAM02747x" name="phytanoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H70N7O17P3S">
+      <species metaid="M_MAM02747x" sboTerm="SBO:0000247" id="M_MAM02747x" name="phytanoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H70N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02747x">
+            <rdf:Description rdf:about="#M_MAM02747x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/phytcoa"/>
@@ -77144,10 +77180,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02748c" sboTerm="SBO:0000247" id="MAM02748c" name="phytoceramide pool" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H38NO4R">
+      <species metaid="M_MAM02748c" sboTerm="SBO:0000247" id="M_MAM02748c" name="phytoceramide pool" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H38NO4R">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02748c">
+            <rdf:Description rdf:about="#M_MAM02748c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:31998"/>
@@ -77161,10 +77197,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02749c" sboTerm="SBO:0000247" id="MAM02749c" name="phytosphingosine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C18H40NO3">
+      <species metaid="M_MAM02749c" sboTerm="SBO:0000247" id="M_MAM02749c" name="phytosphingosine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C18H40NO3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02749c">
+            <rdf:Description rdf:about="#M_MAM02749c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/phsphings"/>
@@ -77180,10 +77216,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02750c" sboTerm="SBO:0000247" id="MAM02750c" name="PI pool" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C11H16O13PR2">
+      <species metaid="M_MAM02750c" sboTerm="SBO:0000247" id="M_MAM02750c" name="PI pool" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C11H16O13PR2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02750c">
+            <rdf:Description rdf:about="#M_MAM02750c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pail_hs"/>
@@ -77197,10 +77233,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02750g" sboTerm="SBO:0000247" id="MAM02750g" name="PI pool" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C11H16O13PR2">
+      <species metaid="M_MAM02750g" sboTerm="SBO:0000247" id="M_MAM02750g" name="PI pool" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C11H16O13PR2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02750g">
+            <rdf:Description rdf:about="#M_MAM02750g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pail_hs"/>
@@ -77214,10 +77250,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02750l" sboTerm="SBO:0000247" id="MAM02750l" name="PI pool" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C11H16O13PR2">
+      <species metaid="M_MAM02750l" sboTerm="SBO:0000247" id="M_MAM02750l" name="PI pool" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C11H16O13PR2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02750l">
+            <rdf:Description rdf:about="#M_MAM02750l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pail_hs"/>
@@ -77231,10 +77267,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02750n" sboTerm="SBO:0000247" id="MAM02750n" name="PI pool" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C11H16O13PR2">
+      <species metaid="M_MAM02750n" sboTerm="SBO:0000247" id="M_MAM02750n" name="PI pool" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C11H16O13PR2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02750n">
+            <rdf:Description rdf:about="#M_MAM02750n">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pail_hs"/>
@@ -77248,10 +77284,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02750r" sboTerm="SBO:0000247" id="MAM02750r" name="PI pool" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C11H16O13PR2">
+      <species metaid="M_MAM02750r" sboTerm="SBO:0000247" id="M_MAM02750r" name="PI pool" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C11H16O13PR2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02750r">
+            <rdf:Description rdf:about="#M_MAM02750r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pail_hs"/>
@@ -77265,10 +77301,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02751c" sboTerm="SBO:0000247" id="MAM02751c" name="Pi" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="HO4P">
+      <species metaid="M_MAM02751c" sboTerm="SBO:0000247" id="M_MAM02751c" name="Pi" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="HO4P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02751c">
+            <rdf:Description rdf:about="#M_MAM02751c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pi"/>
@@ -77283,10 +77319,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02751g" sboTerm="SBO:0000247" id="MAM02751g" name="Pi" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="HO4P">
+      <species metaid="M_MAM02751g" sboTerm="SBO:0000247" id="M_MAM02751g" name="Pi" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="HO4P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02751g">
+            <rdf:Description rdf:about="#M_MAM02751g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pi"/>
@@ -77301,10 +77337,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02751l" sboTerm="SBO:0000247" id="MAM02751l" name="Pi" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="HO4P">
+      <species metaid="M_MAM02751l" sboTerm="SBO:0000247" id="M_MAM02751l" name="Pi" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="HO4P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02751l">
+            <rdf:Description rdf:about="#M_MAM02751l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pi"/>
@@ -77319,10 +77355,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02751m" sboTerm="SBO:0000247" id="MAM02751m" name="Pi" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="HO4P">
+      <species metaid="M_MAM02751m" sboTerm="SBO:0000247" id="M_MAM02751m" name="Pi" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="HO4P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02751m">
+            <rdf:Description rdf:about="#M_MAM02751m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pi"/>
@@ -77337,10 +77373,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02751n" sboTerm="SBO:0000247" id="MAM02751n" name="Pi" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="HO4P">
+      <species metaid="M_MAM02751n" sboTerm="SBO:0000247" id="M_MAM02751n" name="Pi" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="HO4P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02751n">
+            <rdf:Description rdf:about="#M_MAM02751n">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pi"/>
@@ -77355,10 +77391,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02751x" sboTerm="SBO:0000247" id="MAM02751x" name="Pi" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="HO4P">
+      <species metaid="M_MAM02751x" sboTerm="SBO:0000247" id="M_MAM02751x" name="Pi" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="HO4P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02751x">
+            <rdf:Description rdf:about="#M_MAM02751x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pi"/>
@@ -77373,10 +77409,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02751r" sboTerm="SBO:0000247" id="MAM02751r" name="Pi" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="HO4P">
+      <species metaid="M_MAM02751r" sboTerm="SBO:0000247" id="M_MAM02751r" name="Pi" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="HO4P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02751r">
+            <rdf:Description rdf:about="#M_MAM02751r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pi"/>
@@ -77391,10 +77427,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02751e" sboTerm="SBO:0000247" id="MAM02751e" name="Pi" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="HO4P">
+      <species metaid="M_MAM02751e" sboTerm="SBO:0000247" id="M_MAM02751e" name="Pi" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="HO4P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02751e">
+            <rdf:Description rdf:about="#M_MAM02751e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pi"/>
@@ -77409,10 +77445,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02752c" sboTerm="SBO:0000247" id="MAM02752c" name="picolinic acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H4NO2">
+      <species metaid="M_MAM02752c" sboTerm="SBO:0000247" id="M_MAM02752c" name="picolinic acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H4NO2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02752c">
+            <rdf:Description rdf:about="#M_MAM02752c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:28747"/>
@@ -77428,10 +77464,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02753c" sboTerm="SBO:0000247" id="MAM02753c" name="plasminogen" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C3948H6073N1123O1213S59">
+      <species metaid="M_MAM02753c" sboTerm="SBO:0000247" id="M_MAM02753c" name="plasminogen" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C3948H6073N1123O1213S59">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02753c">
+            <rdf:Description rdf:about="#M_MAM02753c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/PROTEIN"/>
@@ -77443,10 +77479,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02753l" sboTerm="SBO:0000247" id="MAM02753l" name="plasminogen" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C3948H6073N1123O1213S59">
+      <species metaid="M_MAM02753l" sboTerm="SBO:0000247" id="M_MAM02753l" name="plasminogen" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C3948H6073N1123O1213S59">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02753l">
+            <rdf:Description rdf:about="#M_MAM02753l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/PROTEIN"/>
@@ -77458,10 +77494,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02753e" sboTerm="SBO:0000247" id="MAM02753e" name="plasminogen" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C3948H6073N1123O1213S59">
+      <species metaid="M_MAM02753e" sboTerm="SBO:0000247" id="M_MAM02753e" name="plasminogen" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C3948H6073N1123O1213S59">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02753e">
+            <rdf:Description rdf:about="#M_MAM02753e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/PROTEIN"/>
@@ -77473,10 +77509,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02754c" sboTerm="SBO:0000247" id="MAM02754c" name="PNP" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H5NO3">
+      <species metaid="M_MAM02754c" sboTerm="SBO:0000247" id="M_MAM02754c" name="PNP" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H5NO3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02754c">
+            <rdf:Description rdf:about="#M_MAM02754c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/4nph"/>
@@ -77490,10 +77526,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02754e" sboTerm="SBO:0000247" id="MAM02754e" name="PNP" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H5NO3">
+      <species metaid="M_MAM02754e" sboTerm="SBO:0000247" id="M_MAM02754e" name="PNP" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H5NO3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02754e">
+            <rdf:Description rdf:about="#M_MAM02754e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/4nph"/>
@@ -77507,10 +77543,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02755c" sboTerm="SBO:0000247" id="MAM02755c" name="polynucleotide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C15H23O16P2R3">
+      <species metaid="M_MAM02755c" sboTerm="SBO:0000247" id="M_MAM02755c" name="polynucleotide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C15H23O16P2R3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02755c">
+            <rdf:Description rdf:about="#M_MAM02755c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:15986"/>
@@ -77523,10 +77559,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02756c" sboTerm="SBO:0000247" id="MAM02756c" name="porphobilinogen" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H13N2O4">
+      <species metaid="M_MAM02756c" sboTerm="SBO:0000247" id="M_MAM02756c" name="porphobilinogen" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H13N2O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02756c">
+            <rdf:Description rdf:about="#M_MAM02756c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ppbng"/>
@@ -77542,10 +77578,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02757c" sboTerm="SBO:0000247" id="MAM02757c" name="PPARA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C2303H3655N619O695S34">
+      <species metaid="M_MAM02757c" sboTerm="SBO:0000247" id="M_MAM02757c" name="PPARA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C2303H3655N619O695S34">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02757c">
+            <rdf:Description rdf:about="#M_MAM02757c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M02757"/>
@@ -77555,10 +77591,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02757l" sboTerm="SBO:0000247" id="MAM02757l" name="PPARA" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C2303H3655N619O695S34">
+      <species metaid="M_MAM02757l" sboTerm="SBO:0000247" id="M_MAM02757l" name="PPARA" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C2303H3655N619O695S34">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02757l">
+            <rdf:Description rdf:about="#M_MAM02757l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M02757"/>
@@ -77568,10 +77604,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02757n" sboTerm="SBO:0000247" id="MAM02757n" name="PPARA" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C2303H3655N619O695S34">
+      <species metaid="M_MAM02757n" sboTerm="SBO:0000247" id="M_MAM02757n" name="PPARA" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C2303H3655N619O695S34">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02757n">
+            <rdf:Description rdf:about="#M_MAM02757n">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M02757"/>
@@ -77581,10 +77617,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02759c" sboTerm="SBO:0000247" id="MAM02759c" name="PPi" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="HO7P2">
+      <species metaid="M_MAM02759c" sboTerm="SBO:0000247" id="M_MAM02759c" name="PPi" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="HO7P2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02759c">
+            <rdf:Description rdf:about="#M_MAM02759c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ppi"/>
@@ -77600,10 +77636,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02759m" sboTerm="SBO:0000247" id="MAM02759m" name="PPi" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="HO7P2">
+      <species metaid="M_MAM02759m" sboTerm="SBO:0000247" id="M_MAM02759m" name="PPi" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="HO7P2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02759m">
+            <rdf:Description rdf:about="#M_MAM02759m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ppi"/>
@@ -77619,10 +77655,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02759n" sboTerm="SBO:0000247" id="MAM02759n" name="PPi" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="HO7P2">
+      <species metaid="M_MAM02759n" sboTerm="SBO:0000247" id="M_MAM02759n" name="PPi" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="HO7P2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02759n">
+            <rdf:Description rdf:about="#M_MAM02759n">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ppi"/>
@@ -77638,10 +77674,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02759x" sboTerm="SBO:0000247" id="MAM02759x" name="PPi" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="HO7P2">
+      <species metaid="M_MAM02759x" sboTerm="SBO:0000247" id="M_MAM02759x" name="PPi" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="HO7P2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02759x">
+            <rdf:Description rdf:about="#M_MAM02759x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ppi"/>
@@ -77657,10 +77693,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02759r" sboTerm="SBO:0000247" id="MAM02759r" name="PPi" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="HO7P2">
+      <species metaid="M_MAM02759r" sboTerm="SBO:0000247" id="M_MAM02759r" name="PPi" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="HO7P2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02759r">
+            <rdf:Description rdf:about="#M_MAM02759r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ppi"/>
@@ -77676,10 +77712,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02759e" sboTerm="SBO:0000247" id="MAM02759e" name="PPi" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="HO7P2">
+      <species metaid="M_MAM02759e" sboTerm="SBO:0000247" id="M_MAM02759e" name="PPi" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="HO7P2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02759e">
+            <rdf:Description rdf:about="#M_MAM02759e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ppi"/>
@@ -77695,10 +77731,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02760c" sboTerm="SBO:0000247" id="MAM02760c" name="pregn-5-ene-3,20-dione" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H30O2">
+      <species metaid="M_MAM02760c" sboTerm="SBO:0000247" id="M_MAM02760c" name="pregn-5-ene-3,20-dione" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H30O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02760c">
+            <rdf:Description rdf:about="#M_MAM02760c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM6391"/>
@@ -77709,10 +77745,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02761c" sboTerm="SBO:0000247" id="MAM02761c" name="pregn-5-ene-3,20-dione-17-ol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H30O3">
+      <species metaid="M_MAM02761c" sboTerm="SBO:0000247" id="M_MAM02761c" name="pregn-5-ene-3,20-dione-17-ol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H30O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02761c">
+            <rdf:Description rdf:about="#M_MAM02761c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM8029"/>
@@ -77723,10 +77759,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02762c" sboTerm="SBO:0000247" id="MAM02762c" name="pregnenolone sulfate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C21H31O5S">
+      <species metaid="M_MAM02762c" sboTerm="SBO:0000247" id="M_MAM02762c" name="pregnenolone sulfate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C21H31O5S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02762c">
+            <rdf:Description rdf:about="#M_MAM02762c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/prgnlones"/>
@@ -77744,10 +77780,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02762r" sboTerm="SBO:0000247" id="MAM02762r" name="pregnenolone sulfate" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C21H31O5S">
+      <species metaid="M_MAM02762r" sboTerm="SBO:0000247" id="M_MAM02762r" name="pregnenolone sulfate" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C21H31O5S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02762r">
+            <rdf:Description rdf:about="#M_MAM02762r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/prgnlones"/>
@@ -77765,10 +77801,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02763c" sboTerm="SBO:0000247" id="MAM02763c" name="pregnenolone" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H32O2">
+      <species metaid="M_MAM02763c" sboTerm="SBO:0000247" id="M_MAM02763c" name="pregnenolone" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H32O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02763c">
+            <rdf:Description rdf:about="#M_MAM02763c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/prgnlone"/>
@@ -77786,10 +77822,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02763m" sboTerm="SBO:0000247" id="MAM02763m" name="pregnenolone" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H32O2">
+      <species metaid="M_MAM02763m" sboTerm="SBO:0000247" id="M_MAM02763m" name="pregnenolone" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H32O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02763m">
+            <rdf:Description rdf:about="#M_MAM02763m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/prgnlone"/>
@@ -77807,10 +77843,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02763r" sboTerm="SBO:0000247" id="MAM02763r" name="pregnenolone" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H32O2">
+      <species metaid="M_MAM02763r" sboTerm="SBO:0000247" id="M_MAM02763r" name="pregnenolone" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H32O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02763r">
+            <rdf:Description rdf:about="#M_MAM02763r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/prgnlone"/>
@@ -77828,10 +77864,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02765c" sboTerm="SBO:0000247" id="MAM02765c" name="previtamin D3" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H44O">
+      <species metaid="M_MAM02765c" sboTerm="SBO:0000247" id="M_MAM02765c" name="previtamin D3" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H44O">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02765c">
+            <rdf:Description rdf:about="#M_MAM02765c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pd3"/>
@@ -77846,10 +77882,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02766x" sboTerm="SBO:0000247" id="MAM02766x" name="pristanic acid" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C19H37O2">
+      <species metaid="M_MAM02766x" sboTerm="SBO:0000247" id="M_MAM02766x" name="pristanic acid" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C19H37O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02766x">
+            <rdf:Description rdf:about="#M_MAM02766x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/prist"/>
@@ -77866,10 +77902,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02767c" sboTerm="SBO:0000247" id="MAM02767c" name="procollagen-5-hydroxy-L-lysine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C7H14N3O3R2">
+      <species metaid="M_MAM02767c" sboTerm="SBO:0000247" id="M_MAM02767c" name="procollagen-5-hydroxy-L-lysine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C7H14N3O3R2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02767c">
+            <rdf:Description rdf:about="#M_MAM02767c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:51807"/>
@@ -77882,10 +77918,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02768c" sboTerm="SBO:0000247" id="MAM02768c" name="procollagen-L-lysine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C7H14N3O2R2">
+      <species metaid="M_MAM02768c" sboTerm="SBO:0000247" id="M_MAM02768c" name="procollagen-L-lysine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C7H14N3O2R2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02768c">
+            <rdf:Description rdf:about="#M_MAM02768c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pcollglys"/>
@@ -77898,10 +77934,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02769c" sboTerm="SBO:0000247" id="MAM02769c" name="progesterone" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H30O2">
+      <species metaid="M_MAM02769c" sboTerm="SBO:0000247" id="M_MAM02769c" name="progesterone" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H30O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02769c">
+            <rdf:Description rdf:about="#M_MAM02769c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/prgstrn"/>
@@ -77919,10 +77955,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02769r" sboTerm="SBO:0000247" id="MAM02769r" name="progesterone" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H30O2">
+      <species metaid="M_MAM02769r" sboTerm="SBO:0000247" id="M_MAM02769r" name="progesterone" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H30O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02769r">
+            <rdf:Description rdf:about="#M_MAM02769r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/prgstrn"/>
@@ -77940,10 +77976,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02769e" sboTerm="SBO:0000247" id="MAM02769e" name="progesterone" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H30O2">
+      <species metaid="M_MAM02769e" sboTerm="SBO:0000247" id="M_MAM02769e" name="progesterone" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H30O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02769e">
+            <rdf:Description rdf:about="#M_MAM02769e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/prgstrn"/>
@@ -77961,10 +77997,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02770c" sboTerm="SBO:0000247" id="MAM02770c" name="proline" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H9NO2">
+      <species metaid="M_MAM02770c" sboTerm="SBO:0000247" id="M_MAM02770c" name="proline" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H9NO2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02770c">
+            <rdf:Description rdf:about="#M_MAM02770c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pro__L"/>
@@ -77981,10 +78017,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02770l" sboTerm="SBO:0000247" id="MAM02770l" name="proline" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H9NO2">
+      <species metaid="M_MAM02770l" sboTerm="SBO:0000247" id="M_MAM02770l" name="proline" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H9NO2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02770l">
+            <rdf:Description rdf:about="#M_MAM02770l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pro__L"/>
@@ -78001,10 +78037,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02770m" sboTerm="SBO:0000247" id="MAM02770m" name="proline" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H9NO2">
+      <species metaid="M_MAM02770m" sboTerm="SBO:0000247" id="M_MAM02770m" name="proline" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H9NO2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02770m">
+            <rdf:Description rdf:about="#M_MAM02770m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pro__L"/>
@@ -78021,10 +78057,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02770e" sboTerm="SBO:0000247" id="MAM02770e" name="proline" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H9NO2">
+      <species metaid="M_MAM02770e" sboTerm="SBO:0000247" id="M_MAM02770e" name="proline" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H9NO2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02770e">
+            <rdf:Description rdf:about="#M_MAM02770e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pro__L"/>
@@ -78041,10 +78077,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02771c" sboTerm="SBO:0000247" id="MAM02771c" name="propane-1,2-diol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H8O2">
+      <species metaid="M_MAM02771c" sboTerm="SBO:0000247" id="M_MAM02771c" name="propane-1,2-diol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H8O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02771c">
+            <rdf:Description rdf:about="#M_MAM02771c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/12ppd__R"/>
@@ -78063,10 +78099,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02772c" sboTerm="SBO:0000247" id="MAM02772c" name="propanoate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C3H5O2">
+      <species metaid="M_MAM02772c" sboTerm="SBO:0000247" id="M_MAM02772c" name="propanoate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C3H5O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02772c">
+            <rdf:Description rdf:about="#M_MAM02772c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ppa"/>
@@ -78084,10 +78120,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02772m" sboTerm="SBO:0000247" id="MAM02772m" name="propanoate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C3H5O2">
+      <species metaid="M_MAM02772m" sboTerm="SBO:0000247" id="M_MAM02772m" name="propanoate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C3H5O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02772m">
+            <rdf:Description rdf:about="#M_MAM02772m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ppa"/>
@@ -78105,10 +78141,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02772e" sboTerm="SBO:0000247" id="MAM02772e" name="propanoate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C3H5O2">
+      <species metaid="M_MAM02772e" sboTerm="SBO:0000247" id="M_MAM02772e" name="propanoate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C3H5O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02772e">
+            <rdf:Description rdf:about="#M_MAM02772e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ppa"/>
@@ -78126,10 +78162,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02773c" sboTerm="SBO:0000247" id="MAM02773c" name="propanoyl-[ACP]" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C14H25N2O8PRS">
+      <species metaid="M_MAM02773c" sboTerm="SBO:0000247" id="M_MAM02773c" name="propanoyl-[ACP]" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C14H25N2O8PRS">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02773c">
+            <rdf:Description rdf:about="#M_MAM02773c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM166823"/>
@@ -78140,10 +78176,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02774c" sboTerm="SBO:0000247" id="MAM02774c" name="propanoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C24H36N7O17P3S">
+      <species metaid="M_MAM02774c" sboTerm="SBO:0000247" id="M_MAM02774c" name="propanoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C24H36N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02774c">
+            <rdf:Description rdf:about="#M_MAM02774c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ppcoa"/>
@@ -78159,10 +78195,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02774m" sboTerm="SBO:0000247" id="MAM02774m" name="propanoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C24H36N7O17P3S">
+      <species metaid="M_MAM02774m" sboTerm="SBO:0000247" id="M_MAM02774m" name="propanoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C24H36N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02774m">
+            <rdf:Description rdf:about="#M_MAM02774m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ppcoa"/>
@@ -78178,10 +78214,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02774x" sboTerm="SBO:0000247" id="MAM02774x" name="propanoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C24H36N7O17P3S">
+      <species metaid="M_MAM02774x" sboTerm="SBO:0000247" id="M_MAM02774x" name="propanoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C24H36N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02774x">
+            <rdf:Description rdf:about="#M_MAM02774x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ppcoa"/>
@@ -78197,10 +78233,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02775c" sboTerm="SBO:0000247" id="MAM02775c" name="propinol adenylate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C13H17N5O8P">
+      <species metaid="M_MAM02775c" sboTerm="SBO:0000247" id="M_MAM02775c" name="propinol adenylate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C13H17N5O8P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02775c">
+            <rdf:Description rdf:about="#M_MAM02775c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C05983"/>
@@ -78212,10 +78248,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02775m" sboTerm="SBO:0000247" id="MAM02775m" name="propinol adenylate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C13H17N5O8P">
+      <species metaid="M_MAM02775m" sboTerm="SBO:0000247" id="M_MAM02775m" name="propinol adenylate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C13H17N5O8P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02775m">
+            <rdf:Description rdf:about="#M_MAM02775m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C05983"/>
@@ -78227,10 +78263,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02776c" sboTerm="SBO:0000247" id="MAM02776c" name="prostaglandin A1" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O4">
+      <species metaid="M_MAM02776c" sboTerm="SBO:0000247" id="M_MAM02776c" name="prostaglandin A1" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02776c">
+            <rdf:Description rdf:about="#M_MAM02776c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:15545"/>
@@ -78246,10 +78282,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02776e" sboTerm="SBO:0000247" id="MAM02776e" name="prostaglandin A1" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O4">
+      <species metaid="M_MAM02776e" sboTerm="SBO:0000247" id="M_MAM02776e" name="prostaglandin A1" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02776e">
+            <rdf:Description rdf:about="#M_MAM02776e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:15545"/>
@@ -78265,10 +78301,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02777c" sboTerm="SBO:0000247" id="MAM02777c" name="prostaglandin A2" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H29O4">
+      <species metaid="M_MAM02777c" sboTerm="SBO:0000247" id="M_MAM02777c" name="prostaglandin A2" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H29O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02777c">
+            <rdf:Description rdf:about="#M_MAM02777c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:27820"/>
@@ -78284,10 +78320,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02777e" sboTerm="SBO:0000247" id="MAM02777e" name="prostaglandin A2" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H29O4">
+      <species metaid="M_MAM02777e" sboTerm="SBO:0000247" id="M_MAM02777e" name="prostaglandin A2" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H29O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02777e">
+            <rdf:Description rdf:about="#M_MAM02777e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:27820"/>
@@ -78303,10 +78339,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02778c" sboTerm="SBO:0000247" id="MAM02778c" name="prostaglandin B1" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O4">
+      <species metaid="M_MAM02778c" sboTerm="SBO:0000247" id="M_MAM02778c" name="prostaglandin B1" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02778c">
+            <rdf:Description rdf:about="#M_MAM02778c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:27624"/>
@@ -78322,10 +78358,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02778e" sboTerm="SBO:0000247" id="MAM02778e" name="prostaglandin B1" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O4">
+      <species metaid="M_MAM02778e" sboTerm="SBO:0000247" id="M_MAM02778e" name="prostaglandin B1" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02778e">
+            <rdf:Description rdf:about="#M_MAM02778e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:27624"/>
@@ -78341,10 +78377,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02779c" sboTerm="SBO:0000247" id="MAM02779c" name="prostaglandin B2" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H29O4">
+      <species metaid="M_MAM02779c" sboTerm="SBO:0000247" id="M_MAM02779c" name="prostaglandin B2" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H29O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
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+            <rdf:Description rdf:about="#M_MAM02779c">
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@@ -78360,10 +78396,10 @@
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+      <species metaid="M_MAM02779e" sboTerm="SBO:0000247" id="M_MAM02779e" name="prostaglandin B2" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H29O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02779e">
+            <rdf:Description rdf:about="#M_MAM02779e">
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@@ -78379,10 +78415,10 @@
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+      <species metaid="M_MAM02780c" sboTerm="SBO:0000247" id="M_MAM02780c" name="prostaglandin C1" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02780c">
+            <rdf:Description rdf:about="#M_MAM02780c">
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@@ -78396,10 +78432,10 @@
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+      <species metaid="M_MAM02780e" sboTerm="SBO:0000247" id="M_MAM02780e" name="prostaglandin C1" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02780e">
+            <rdf:Description rdf:about="#M_MAM02780e">
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@@ -78413,10 +78449,10 @@
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+      <species metaid="M_MAM02781c" sboTerm="SBO:0000247" id="M_MAM02781c" name="prostaglandin C2" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H29O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02781c">
+            <rdf:Description rdf:about="#M_MAM02781c">
               <bqbiol:is>
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@@ -78431,10 +78467,10 @@
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+      <species metaid="M_MAM02781e" sboTerm="SBO:0000247" id="M_MAM02781e" name="prostaglandin C2" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H29O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02781e">
+            <rdf:Description rdf:about="#M_MAM02781e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:27555"/>
@@ -78449,10 +78485,10 @@
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+      <species metaid="M_MAM02782c" sboTerm="SBO:0000247" id="M_MAM02782c" name="prostaglandin D1" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H33O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02782c">
+            <rdf:Description rdf:about="#M_MAM02782c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:27696"/>
@@ -78467,10 +78503,10 @@
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+      <species metaid="M_MAM02782e" sboTerm="SBO:0000247" id="M_MAM02782e" name="prostaglandin D1" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H33O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02782e">
+            <rdf:Description rdf:about="#M_MAM02782e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:27696"/>
@@ -78485,10 +78521,10 @@
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+      <species metaid="M_MAM02783c" sboTerm="SBO:0000247" id="M_MAM02783c" name="prostaglandin D2" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02783c">
+            <rdf:Description rdf:about="#M_MAM02783c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/prostgd2"/>
@@ -78506,10 +78542,10 @@
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-      <species metaid="MAM02783r" sboTerm="SBO:0000247" id="MAM02783r" name="prostaglandin D2" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O5">
+      <species metaid="M_MAM02783r" sboTerm="SBO:0000247" id="M_MAM02783r" name="prostaglandin D2" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02783r">
+            <rdf:Description rdf:about="#M_MAM02783r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/prostgd2"/>
@@ -78527,10 +78563,10 @@
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+      <species metaid="M_MAM02783e" sboTerm="SBO:0000247" id="M_MAM02783e" name="prostaglandin D2" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02783e">
+            <rdf:Description rdf:about="#M_MAM02783e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/prostgd2"/>
@@ -78548,10 +78584,10 @@
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-      <species metaid="MAM02784c" sboTerm="SBO:0000247" id="MAM02784c" name="prostaglandin D3" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H29O5">
+      <species metaid="M_MAM02784c" sboTerm="SBO:0000247" id="M_MAM02784c" name="prostaglandin D3" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H29O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02784c">
+            <rdf:Description rdf:about="#M_MAM02784c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:34939"/>
@@ -78566,10 +78602,10 @@
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-      <species metaid="MAM02784e" sboTerm="SBO:0000247" id="MAM02784e" name="prostaglandin D3" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H29O5">
+      <species metaid="M_MAM02784e" sboTerm="SBO:0000247" id="M_MAM02784e" name="prostaglandin D3" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H29O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02784e">
+            <rdf:Description rdf:about="#M_MAM02784e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:34939"/>
@@ -78584,10 +78620,10 @@
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-      <species metaid="MAM02785c" sboTerm="SBO:0000247" id="MAM02785c" name="prostaglandin E1" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H33O5">
+      <species metaid="M_MAM02785c" sboTerm="SBO:0000247" id="M_MAM02785c" name="prostaglandin E1" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H33O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02785c">
+            <rdf:Description rdf:about="#M_MAM02785c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/prostge1"/>
@@ -78605,10 +78641,10 @@
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-      <species metaid="MAM02785e" sboTerm="SBO:0000247" id="MAM02785e" name="prostaglandin E1" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H33O5">
+      <species metaid="M_MAM02785e" sboTerm="SBO:0000247" id="M_MAM02785e" name="prostaglandin E1" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H33O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02785e">
+            <rdf:Description rdf:about="#M_MAM02785e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/prostge1"/>
@@ -78626,10 +78662,10 @@
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-      <species metaid="MAM02786c" sboTerm="SBO:0000247" id="MAM02786c" name="prostaglandin E2" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O5">
+      <species metaid="M_MAM02786c" sboTerm="SBO:0000247" id="M_MAM02786c" name="prostaglandin E2" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02786c">
+            <rdf:Description rdf:about="#M_MAM02786c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/prostge2"/>
@@ -78647,10 +78683,10 @@
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-      <species metaid="MAM02786r" sboTerm="SBO:0000247" id="MAM02786r" name="prostaglandin E2" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O5">
+      <species metaid="M_MAM02786r" sboTerm="SBO:0000247" id="M_MAM02786r" name="prostaglandin E2" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02786r">
+            <rdf:Description rdf:about="#M_MAM02786r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/prostge2"/>
@@ -78668,10 +78704,10 @@
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-      <species metaid="MAM02786e" sboTerm="SBO:0000247" id="MAM02786e" name="prostaglandin E2" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O5">
+      <species metaid="M_MAM02786e" sboTerm="SBO:0000247" id="M_MAM02786e" name="prostaglandin E2" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02786e">
+            <rdf:Description rdf:about="#M_MAM02786e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/prostge2"/>
@@ -78689,10 +78725,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02787c" sboTerm="SBO:0000247" id="MAM02787c" name="prostaglandin E3" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H29O5">
+      <species metaid="M_MAM02787c" sboTerm="SBO:0000247" id="M_MAM02787c" name="prostaglandin E3" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H29O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02787c">
+            <rdf:Description rdf:about="#M_MAM02787c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:28031"/>
@@ -78708,10 +78744,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02787n" sboTerm="SBO:0000247" id="MAM02787n" name="prostaglandin E3" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H29O5">
+      <species metaid="M_MAM02787n" sboTerm="SBO:0000247" id="M_MAM02787n" name="prostaglandin E3" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H29O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02787n">
+            <rdf:Description rdf:about="#M_MAM02787n">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:28031"/>
@@ -78727,10 +78763,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM02787e" sboTerm="SBO:0000247" id="MAM02787e" name="prostaglandin E3" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H29O5">
+      <species metaid="M_MAM02787e" sboTerm="SBO:0000247" id="M_MAM02787e" name="prostaglandin E3" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H29O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02787e">
+            <rdf:Description rdf:about="#M_MAM02787e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:28031"/>
@@ -78746,10 +78782,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM02788c" sboTerm="SBO:0000247" id="MAM02788c" name="prostaglandin F1alpha" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H35O5">
+      <species metaid="M_MAM02788c" sboTerm="SBO:0000247" id="M_MAM02788c" name="prostaglandin F1alpha" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H35O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02788c">
+            <rdf:Description rdf:about="#M_MAM02788c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:28852"/>
@@ -78764,10 +78800,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM02788e" sboTerm="SBO:0000247" id="MAM02788e" name="prostaglandin F1alpha" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H35O5">
+      <species metaid="M_MAM02788e" sboTerm="SBO:0000247" id="M_MAM02788e" name="prostaglandin F1alpha" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H35O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02788e">
+            <rdf:Description rdf:about="#M_MAM02788e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:28852"/>
@@ -78782,10 +78818,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02789c" sboTerm="SBO:0000247" id="MAM02789c" name="prostaglandin F2alpha" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H33O5">
+      <species metaid="M_MAM02789c" sboTerm="SBO:0000247" id="M_MAM02789c" name="prostaglandin F2alpha" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H33O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02789c">
+            <rdf:Description rdf:about="#M_MAM02789c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/prostgf2"/>
@@ -78803,10 +78839,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02789e" sboTerm="SBO:0000247" id="MAM02789e" name="prostaglandin F2alpha" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H33O5">
+      <species metaid="M_MAM02789e" sboTerm="SBO:0000247" id="M_MAM02789e" name="prostaglandin F2alpha" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H33O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02789e">
+            <rdf:Description rdf:about="#M_MAM02789e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/prostgf2"/>
@@ -78824,10 +78860,10 @@
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         </annotation>
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-      <species metaid="MAM02790c" sboTerm="SBO:0000247" id="MAM02790c" name="prostaglandin F2beta" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H33O5">
+      <species metaid="M_MAM02790c" sboTerm="SBO:0000247" id="M_MAM02790c" name="prostaglandin F2beta" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H33O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02790c">
+            <rdf:Description rdf:about="#M_MAM02790c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:28922"/>
@@ -78842,10 +78878,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02790e" sboTerm="SBO:0000247" id="MAM02790e" name="prostaglandin F2beta" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H33O5">
+      <species metaid="M_MAM02790e" sboTerm="SBO:0000247" id="M_MAM02790e" name="prostaglandin F2beta" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H33O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02790e">
+            <rdf:Description rdf:about="#M_MAM02790e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:28922"/>
@@ -78860,10 +78896,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02792c" sboTerm="SBO:0000247" id="MAM02792c" name="prostaglandin G2" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O6">
+      <species metaid="M_MAM02792c" sboTerm="SBO:0000247" id="M_MAM02792c" name="prostaglandin G2" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02792c">
+            <rdf:Description rdf:about="#M_MAM02792c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:27647"/>
@@ -78877,10 +78913,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02792r" sboTerm="SBO:0000247" id="MAM02792r" name="prostaglandin G2" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O6">
+      <species metaid="M_MAM02792r" sboTerm="SBO:0000247" id="M_MAM02792r" name="prostaglandin G2" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02792r">
+            <rdf:Description rdf:about="#M_MAM02792r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:27647"/>
@@ -78894,10 +78930,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02792e" sboTerm="SBO:0000247" id="MAM02792e" name="prostaglandin G2" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O6">
+      <species metaid="M_MAM02792e" sboTerm="SBO:0000247" id="M_MAM02792e" name="prostaglandin G2" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02792e">
+            <rdf:Description rdf:about="#M_MAM02792e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:27647"/>
@@ -78911,10 +78947,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02793c" sboTerm="SBO:0000247" id="MAM02793c" name="prostaglandin H1" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H33O5">
+      <species metaid="M_MAM02793c" sboTerm="SBO:0000247" id="M_MAM02793c" name="prostaglandin H1" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H33O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02793c">
+            <rdf:Description rdf:about="#M_MAM02793c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM78300"/>
@@ -78926,10 +78962,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM02793r" sboTerm="SBO:0000247" id="MAM02793r" name="prostaglandin H1" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H33O5">
+      <species metaid="M_MAM02793r" sboTerm="SBO:0000247" id="M_MAM02793r" name="prostaglandin H1" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H33O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02793r">
+            <rdf:Description rdf:about="#M_MAM02793r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM78300"/>
@@ -78941,10 +78977,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM02794c" sboTerm="SBO:0000247" id="MAM02794c" name="prostaglandin H2" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O5">
+      <species metaid="M_MAM02794c" sboTerm="SBO:0000247" id="M_MAM02794c" name="prostaglandin H2" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02794c">
+            <rdf:Description rdf:about="#M_MAM02794c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/prostgh2"/>
@@ -78962,10 +78998,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02794r" sboTerm="SBO:0000247" id="MAM02794r" name="prostaglandin H2" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O5">
+      <species metaid="M_MAM02794r" sboTerm="SBO:0000247" id="M_MAM02794r" name="prostaglandin H2" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02794r">
+            <rdf:Description rdf:about="#M_MAM02794r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/prostgh2"/>
@@ -78983,10 +79019,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02794e" sboTerm="SBO:0000247" id="MAM02794e" name="prostaglandin H2" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O5">
+      <species metaid="M_MAM02794e" sboTerm="SBO:0000247" id="M_MAM02794e" name="prostaglandin H2" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02794e">
+            <rdf:Description rdf:about="#M_MAM02794e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/prostgh2"/>
@@ -79004,10 +79040,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02795c" sboTerm="SBO:0000247" id="MAM02795c" name="prostaglandin I2" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O5">
+      <species metaid="M_MAM02795c" sboTerm="SBO:0000247" id="M_MAM02795c" name="prostaglandin I2" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02795c">
+            <rdf:Description rdf:about="#M_MAM02795c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/prostgi2"/>
@@ -79025,10 +79061,10 @@
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-      <species metaid="MAM02795r" sboTerm="SBO:0000247" id="MAM02795r" name="prostaglandin I2" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O5">
+      <species metaid="M_MAM02795r" sboTerm="SBO:0000247" id="M_MAM02795r" name="prostaglandin I2" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02795r">
+            <rdf:Description rdf:about="#M_MAM02795r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/prostgi2"/>
@@ -79046,10 +79082,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM02795e" sboTerm="SBO:0000247" id="MAM02795e" name="prostaglandin I2" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O5">
+      <species metaid="M_MAM02795e" sboTerm="SBO:0000247" id="M_MAM02795e" name="prostaglandin I2" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02795e">
+            <rdf:Description rdf:about="#M_MAM02795e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/prostgi2"/>
@@ -79067,10 +79103,10 @@
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       </species>
-      <species metaid="MAM02796c" sboTerm="SBO:0000247" id="MAM02796c" name="prostaglandin J2" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H29O4">
+      <species metaid="M_MAM02796c" sboTerm="SBO:0000247" id="M_MAM02796c" name="prostaglandin J2" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H29O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02796c">
+            <rdf:Description rdf:about="#M_MAM02796c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:27485"/>
@@ -79086,10 +79122,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM02796r" sboTerm="SBO:0000247" id="MAM02796r" name="prostaglandin J2" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H29O4">
+      <species metaid="M_MAM02796r" sboTerm="SBO:0000247" id="M_MAM02796r" name="prostaglandin J2" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H29O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02796r">
+            <rdf:Description rdf:about="#M_MAM02796r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:27485"/>
@@ -79105,10 +79141,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02797c" sboTerm="SBO:0000247" id="MAM02797c" name="prostaglandin-PGB2-glyceryl ester" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H36O6">
+      <species metaid="M_MAM02797c" sboTerm="SBO:0000247" id="M_MAM02797c" name="prostaglandin-PGB2-glyceryl ester" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H36O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02797c">
+            <rdf:Description rdf:about="#M_MAM02797c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM168923"/>
@@ -79119,10 +79155,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM02798c" sboTerm="SBO:0000247" id="MAM02798c" name="prostaglandin-PGE2-1-glyceryl ester" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H38O7">
+      <species metaid="M_MAM02798c" sboTerm="SBO:0000247" id="M_MAM02798c" name="prostaglandin-PGE2-1-glyceryl ester" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H38O7">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02798c">
+            <rdf:Description rdf:about="#M_MAM02798c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM31980"/>
@@ -79134,10 +79170,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02799c" sboTerm="SBO:0000247" id="MAM02799c" name="prostaglandin-PGE2-3-glyceryl ester" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H38O7">
+      <species metaid="M_MAM02799c" sboTerm="SBO:0000247" id="M_MAM02799c" name="prostaglandin-PGE2-3-glyceryl ester" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H38O7">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02799c">
+            <rdf:Description rdf:about="#M_MAM02799c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM168924"/>
@@ -79148,10 +79184,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02800c" sboTerm="SBO:0000247" id="MAM02800c" name="prostaglandin-PGE2-glyceryl ester" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H38O7">
+      <species metaid="M_MAM02800c" sboTerm="SBO:0000247" id="M_MAM02800c" name="prostaglandin-PGE2-glyceryl ester" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H38O7">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02800c">
+            <rdf:Description rdf:about="#M_MAM02800c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM78303"/>
@@ -79163,10 +79199,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02802c" sboTerm="SBO:0000247" id="MAM02802c" name="prothrombin" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C3066H4754N874O941S35">
+      <species metaid="M_MAM02802c" sboTerm="SBO:0000247" id="M_MAM02802c" name="prothrombin" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C3066H4754N874O941S35">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02802c">
+            <rdf:Description rdf:about="#M_MAM02802c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/PROTEIN"/>
@@ -79178,10 +79214,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02802l" sboTerm="SBO:0000247" id="MAM02802l" name="prothrombin" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C3066H4754N874O941S35">
+      <species metaid="M_MAM02802l" sboTerm="SBO:0000247" id="M_MAM02802l" name="prothrombin" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C3066H4754N874O941S35">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02802l">
+            <rdf:Description rdf:about="#M_MAM02802l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/PROTEIN"/>
@@ -79193,10 +79229,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02802e" sboTerm="SBO:0000247" id="MAM02802e" name="prothrombin" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C3066H4754N874O941S35">
+      <species metaid="M_MAM02802e" sboTerm="SBO:0000247" id="M_MAM02802e" name="prothrombin" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C3066H4754N874O941S35">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02802e">
+            <rdf:Description rdf:about="#M_MAM02802e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/PROTEIN"/>
@@ -79208,10 +79244,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02803c" sboTerm="SBO:0000247" id="MAM02803c" name="protoporphyrin" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C34H32N4O4">
+      <species metaid="M_MAM02803c" sboTerm="SBO:0000247" id="M_MAM02803c" name="protoporphyrin" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C34H32N4O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02803c">
+            <rdf:Description rdf:about="#M_MAM02803c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ppp9"/>
@@ -79225,10 +79261,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02803m" sboTerm="SBO:0000247" id="MAM02803m" name="protoporphyrin" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C34H32N4O4">
+      <species metaid="M_MAM02803m" sboTerm="SBO:0000247" id="M_MAM02803m" name="protoporphyrin" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C34H32N4O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02803m">
+            <rdf:Description rdf:about="#M_MAM02803m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ppp9"/>
@@ -79242,10 +79278,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02804c" sboTerm="SBO:0000247" id="MAM02804c" name="protoporphyrinogen IX" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C34H38N4O4">
+      <species metaid="M_MAM02804c" sboTerm="SBO:0000247" id="M_MAM02804c" name="protoporphyrinogen IX" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C34H38N4O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02804c">
+            <rdf:Description rdf:about="#M_MAM02804c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pppg9"/>
@@ -79260,10 +79296,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02804m" sboTerm="SBO:0000247" id="MAM02804m" name="protoporphyrinogen IX" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C34H38N4O4">
+      <species metaid="M_MAM02804m" sboTerm="SBO:0000247" id="M_MAM02804m" name="protoporphyrinogen IX" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C34H38N4O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02804m">
+            <rdf:Description rdf:about="#M_MAM02804m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pppg9"/>
@@ -79278,10 +79314,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02805c" sboTerm="SBO:0000247" id="MAM02805c" name="provitamin D3" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H44O">
+      <species metaid="M_MAM02805c" sboTerm="SBO:0000247" id="M_MAM02805c" name="provitamin D3" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H44O">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02805c">
+            <rdf:Description rdf:about="#M_MAM02805c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/7dhchsterol"/>
@@ -79300,10 +79336,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02806c" sboTerm="SBO:0000247" id="MAM02806c" name="PRPP" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C5H8O14P3">
+      <species metaid="M_MAM02806c" sboTerm="SBO:0000247" id="M_MAM02806c" name="PRPP" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C5H8O14P3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02806c">
+            <rdf:Description rdf:about="#M_MAM02806c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/prpp"/>
@@ -79318,10 +79354,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02806e" sboTerm="SBO:0000247" id="MAM02806e" name="PRPP" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C5H8O14P3">
+      <species metaid="M_MAM02806e" sboTerm="SBO:0000247" id="M_MAM02806e" name="PRPP" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C5H8O14P3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02806e">
+            <rdf:Description rdf:about="#M_MAM02806e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/prpp"/>
@@ -79336,10 +79372,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02808c" sboTerm="SBO:0000247" id="MAM02808c" name="PS-LD pool" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C8H11NO10PR2">
+      <species metaid="M_MAM02808c" sboTerm="SBO:0000247" id="M_MAM02808c" name="PS-LD pool" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C8H11NO10PR2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02808c">
+            <rdf:Description rdf:about="#M_MAM02808c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ps_hs"/>
@@ -79355,10 +79391,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02808l" sboTerm="SBO:0000247" id="MAM02808l" name="PS-LD pool" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C8H11NO10PR2">
+      <species metaid="M_MAM02808l" sboTerm="SBO:0000247" id="M_MAM02808l" name="PS-LD pool" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C8H11NO10PR2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02808l">
+            <rdf:Description rdf:about="#M_MAM02808l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ps_hs"/>
@@ -79374,10 +79410,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02808r" sboTerm="SBO:0000247" id="MAM02808r" name="PS-LD pool" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C8H11NO10PR2">
+      <species metaid="M_MAM02808r" sboTerm="SBO:0000247" id="M_MAM02808r" name="PS-LD pool" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C8H11NO10PR2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02808r">
+            <rdf:Description rdf:about="#M_MAM02808r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ps_hs"/>
@@ -79393,10 +79429,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02810c" sboTerm="SBO:0000247" id="MAM02810c" name="psychosine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C24H48NO7">
+      <species metaid="M_MAM02810c" sboTerm="SBO:0000247" id="M_MAM02810c" name="psychosine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C24H48NO7">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02810c">
+            <rdf:Description rdf:about="#M_MAM02810c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:16874"/>
@@ -79413,10 +79449,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02810l" sboTerm="SBO:0000247" id="MAM02810l" name="psychosine" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C24H48NO7">
+      <species metaid="M_MAM02810l" sboTerm="SBO:0000247" id="M_MAM02810l" name="psychosine" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C24H48NO7">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02810l">
+            <rdf:Description rdf:about="#M_MAM02810l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:16874"/>
@@ -79433,10 +79469,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02811c" sboTerm="SBO:0000247" id="MAM02811c" name="putreanine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C7H17N2O2">
+      <species metaid="M_MAM02811c" sboTerm="SBO:0000247" id="M_MAM02811c" name="putreanine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C7H17N2O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02811c">
+            <rdf:Description rdf:about="#M_MAM02811c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/hmdb/HMDB06078"/>
@@ -79449,10 +79485,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02812c" sboTerm="SBO:0000247" id="MAM02812c" name="putrescine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="C4H14N2">
+      <species metaid="M_MAM02812c" sboTerm="SBO:0000247" id="M_MAM02812c" name="putrescine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="C4H14N2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02812c">
+            <rdf:Description rdf:about="#M_MAM02812c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ptrc"/>
@@ -79468,10 +79504,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02812m" sboTerm="SBO:0000247" id="MAM02812m" name="putrescine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="C4H14N2">
+      <species metaid="M_MAM02812m" sboTerm="SBO:0000247" id="M_MAM02812m" name="putrescine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="C4H14N2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02812m">
+            <rdf:Description rdf:about="#M_MAM02812m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ptrc"/>
@@ -79487,10 +79523,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02812x" sboTerm="SBO:0000247" id="MAM02812x" name="putrescine" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="C4H14N2">
+      <species metaid="M_MAM02812x" sboTerm="SBO:0000247" id="M_MAM02812x" name="putrescine" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="C4H14N2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02812x">
+            <rdf:Description rdf:about="#M_MAM02812x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ptrc"/>
@@ -79506,10 +79542,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02812e" sboTerm="SBO:0000247" id="MAM02812e" name="putrescine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="C4H14N2">
+      <species metaid="M_MAM02812e" sboTerm="SBO:0000247" id="M_MAM02812e" name="putrescine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="C4H14N2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02812e">
+            <rdf:Description rdf:about="#M_MAM02812e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ptrc"/>
@@ -79525,10 +79561,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02813c" sboTerm="SBO:0000247" id="MAM02813c" name="pyridoxal" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H9NO3">
+      <species metaid="M_MAM02813c" sboTerm="SBO:0000247" id="M_MAM02813c" name="pyridoxal" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H9NO3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02813c">
+            <rdf:Description rdf:about="#M_MAM02813c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pydx"/>
@@ -79543,10 +79579,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02813e" sboTerm="SBO:0000247" id="MAM02813e" name="pyridoxal" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H9NO3">
+      <species metaid="M_MAM02813e" sboTerm="SBO:0000247" id="M_MAM02813e" name="pyridoxal" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H9NO3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02813e">
+            <rdf:Description rdf:about="#M_MAM02813e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pydx"/>
@@ -79561,10 +79597,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02814c" sboTerm="SBO:0000247" id="MAM02814c" name="pyridoxal-phosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C8H8NO6P">
+      <species metaid="M_MAM02814c" sboTerm="SBO:0000247" id="M_MAM02814c" name="pyridoxal-phosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C8H8NO6P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02814c">
+            <rdf:Description rdf:about="#M_MAM02814c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pydx5p"/>
@@ -79580,10 +79616,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02814e" sboTerm="SBO:0000247" id="MAM02814e" name="pyridoxal-phosphate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C8H8NO6P">
+      <species metaid="M_MAM02814e" sboTerm="SBO:0000247" id="M_MAM02814e" name="pyridoxal-phosphate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C8H8NO6P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02814e">
+            <rdf:Description rdf:about="#M_MAM02814e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pydx5p"/>
@@ -79599,10 +79635,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02815c" sboTerm="SBO:0000247" id="MAM02815c" name="pyridoxamine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C8H13N2O2">
+      <species metaid="M_MAM02815c" sboTerm="SBO:0000247" id="M_MAM02815c" name="pyridoxamine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C8H13N2O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02815c">
+            <rdf:Description rdf:about="#M_MAM02815c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pydam"/>
@@ -79617,10 +79653,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02815e" sboTerm="SBO:0000247" id="MAM02815e" name="pyridoxamine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C8H13N2O2">
+      <species metaid="M_MAM02815e" sboTerm="SBO:0000247" id="M_MAM02815e" name="pyridoxamine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C8H13N2O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02815e">
+            <rdf:Description rdf:about="#M_MAM02815e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pydam"/>
@@ -79635,10 +79671,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02816c" sboTerm="SBO:0000247" id="MAM02816c" name="pyridoxamine-phosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C8H12N2O5P">
+      <species metaid="M_MAM02816c" sboTerm="SBO:0000247" id="M_MAM02816c" name="pyridoxamine-phosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C8H12N2O5P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02816c">
+            <rdf:Description rdf:about="#M_MAM02816c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pyam5p"/>
@@ -79653,10 +79689,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02817c" sboTerm="SBO:0000247" id="MAM02817c" name="pyridoxine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H11NO3">
+      <species metaid="M_MAM02817c" sboTerm="SBO:0000247" id="M_MAM02817c" name="pyridoxine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H11NO3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02817c">
+            <rdf:Description rdf:about="#M_MAM02817c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pydxn"/>
@@ -79672,10 +79708,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02817e" sboTerm="SBO:0000247" id="MAM02817e" name="pyridoxine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H11NO3">
+      <species metaid="M_MAM02817e" sboTerm="SBO:0000247" id="M_MAM02817e" name="pyridoxine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H11NO3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02817e">
+            <rdf:Description rdf:about="#M_MAM02817e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pydxn"/>
@@ -79691,10 +79727,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02818c" sboTerm="SBO:0000247" id="MAM02818c" name="pyridoxine-phosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C8H10NO6P">
+      <species metaid="M_MAM02818c" sboTerm="SBO:0000247" id="M_MAM02818c" name="pyridoxine-phosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C8H10NO6P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02818c">
+            <rdf:Description rdf:about="#M_MAM02818c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pdx5p"/>
@@ -79709,10 +79745,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02819c" sboTerm="SBO:0000247" id="MAM02819c" name="pyruvate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C3H3O3">
+      <species metaid="M_MAM02819c" sboTerm="SBO:0000247" id="M_MAM02819c" name="pyruvate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C3H3O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02819c">
+            <rdf:Description rdf:about="#M_MAM02819c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pyr"/>
@@ -79729,10 +79765,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02819m" sboTerm="SBO:0000247" id="MAM02819m" name="pyruvate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C3H3O3">
+      <species metaid="M_MAM02819m" sboTerm="SBO:0000247" id="M_MAM02819m" name="pyruvate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C3H3O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02819m">
+            <rdf:Description rdf:about="#M_MAM02819m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pyr"/>
@@ -79749,10 +79785,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02819x" sboTerm="SBO:0000247" id="MAM02819x" name="pyruvate" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C3H3O3">
+      <species metaid="M_MAM02819x" sboTerm="SBO:0000247" id="M_MAM02819x" name="pyruvate" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C3H3O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02819x">
+            <rdf:Description rdf:about="#M_MAM02819x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pyr"/>
@@ -79769,10 +79805,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02819e" sboTerm="SBO:0000247" id="MAM02819e" name="pyruvate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C3H3O3">
+      <species metaid="M_MAM02819e" sboTerm="SBO:0000247" id="M_MAM02819e" name="pyruvate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C3H3O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02819e">
+            <rdf:Description rdf:about="#M_MAM02819e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pyr"/>
@@ -79789,10 +79825,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02820c" sboTerm="SBO:0000247" id="MAM02820c" name="queuine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C12H15N5O3">
+      <species metaid="M_MAM02820c" sboTerm="SBO:0000247" id="M_MAM02820c" name="queuine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C12H15N5O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02820c">
+            <rdf:Description rdf:about="#M_MAM02820c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:17433"/>
@@ -79805,10 +79841,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02821e" sboTerm="SBO:0000247" id="MAM02821e" name="quinidine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C20H25N2O2">
+      <species metaid="M_MAM02821e" sboTerm="SBO:0000247" id="M_MAM02821e" name="quinidine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C20H25N2O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02821e">
+            <rdf:Description rdf:about="#M_MAM02821e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:28593"/>
@@ -79821,10 +79857,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02822c" sboTerm="SBO:0000247" id="MAM02822c" name="quinolinate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C7H3NO4">
+      <species metaid="M_MAM02822c" sboTerm="SBO:0000247" id="M_MAM02822c" name="quinolinate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C7H3NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02822c">
+            <rdf:Description rdf:about="#M_MAM02822c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/quln"/>
@@ -79840,10 +79876,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02823c" sboTerm="SBO:0000247" id="MAM02823c" name="quinonoid dihydrobiopterin" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H13N5O3">
+      <species metaid="M_MAM02823c" sboTerm="SBO:0000247" id="M_MAM02823c" name="quinonoid dihydrobiopterin" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H13N5O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02823c">
+            <rdf:Description rdf:about="#M_MAM02823c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:64277"/>
@@ -79859,10 +79895,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02823n" sboTerm="SBO:0000247" id="MAM02823n" name="quinonoid dihydrobiopterin" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H13N5O3">
+      <species metaid="M_MAM02823n" sboTerm="SBO:0000247" id="M_MAM02823n" name="quinonoid dihydrobiopterin" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H13N5O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02823n">
+            <rdf:Description rdf:about="#M_MAM02823n">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:64277"/>
@@ -79878,10 +79914,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02824c" sboTerm="SBO:0000247" id="MAM02824c" name="rac-4-hydroxy-4-O-(beta-D-glucuronide)-all-trans-retinoate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C26H34O9">
+      <species metaid="M_MAM02824c" sboTerm="SBO:0000247" id="M_MAM02824c" name="rac-4-hydroxy-4-O-(beta-D-glucuronide)-all-trans-retinoate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C26H34O9">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02824c">
+            <rdf:Description rdf:about="#M_MAM02824c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/CE2960"/>
@@ -79891,10 +79927,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02824r" sboTerm="SBO:0000247" id="MAM02824r" name="rac-4-hydroxy-4-O-(beta-D-glucuronide)-all-trans-retinoate" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C26H34O9">
+      <species metaid="M_MAM02824r" sboTerm="SBO:0000247" id="M_MAM02824r" name="rac-4-hydroxy-4-O-(beta-D-glucuronide)-all-trans-retinoate" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C26H34O9">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02824r">
+            <rdf:Description rdf:about="#M_MAM02824r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/CE2960"/>
@@ -79904,10 +79940,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02825c" sboTerm="SBO:0000247" id="MAM02825c" name="rac-4-hydroxy-4-O-(beta-D-glucuronide)-all-trans-retinyl-acetate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C28H39O9">
+      <species metaid="M_MAM02825c" sboTerm="SBO:0000247" id="M_MAM02825c" name="rac-4-hydroxy-4-O-(beta-D-glucuronide)-all-trans-retinyl-acetate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C28H39O9">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02825c">
+            <rdf:Description rdf:about="#M_MAM02825c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM160765"/>
@@ -79918,10 +79954,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02825r" sboTerm="SBO:0000247" id="MAM02825r" name="rac-4-hydroxy-4-O-(beta-D-glucuronide)-all-trans-retinyl-acetate" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C28H39O9">
+      <species metaid="M_MAM02825r" sboTerm="SBO:0000247" id="M_MAM02825r" name="rac-4-hydroxy-4-O-(beta-D-glucuronide)-all-trans-retinyl-acetate" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C28H39O9">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02825r">
+            <rdf:Description rdf:about="#M_MAM02825r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM160765"/>
@@ -79932,10 +79968,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02826c" sboTerm="SBO:0000247" id="MAM02826c" name="rac-5,6-epoxy-retinoyl-beta-D-glucuronide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C26H35O9">
+      <species metaid="M_MAM02826c" sboTerm="SBO:0000247" id="M_MAM02826c" name="rac-5,6-epoxy-retinoyl-beta-D-glucuronide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C26H35O9">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02826c">
+            <rdf:Description rdf:about="#M_MAM02826c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM160766"/>
@@ -79946,10 +79982,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02826r" sboTerm="SBO:0000247" id="MAM02826r" name="rac-5,6-epoxy-retinoyl-beta-D-glucuronide" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C26H35O9">
+      <species metaid="M_MAM02826r" sboTerm="SBO:0000247" id="M_MAM02826r" name="rac-5,6-epoxy-retinoyl-beta-D-glucuronide" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C26H35O9">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02826r">
+            <rdf:Description rdf:about="#M_MAM02826r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM160766"/>
@@ -79960,10 +79996,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02828m" sboTerm="SBO:0000247" id="MAM02828m" name="reduced ferredoxin" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="X">
+      <species metaid="M_MAM02828m" sboTerm="SBO:0000247" id="M_MAM02828m" name="reduced ferredoxin" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="X">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02828m">
+            <rdf:Description rdf:about="#M_MAM02828m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:17513"/>
@@ -79976,10 +80012,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02832c" sboTerm="SBO:0000247" id="MAM02832c" name="retinal" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H28O">
+      <species metaid="M_MAM02832c" sboTerm="SBO:0000247" id="M_MAM02832c" name="retinal" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H28O">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02832c">
+            <rdf:Description rdf:about="#M_MAM02832c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/retinal"/>
@@ -79997,10 +80033,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02832r" sboTerm="SBO:0000247" id="MAM02832r" name="retinal" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H28O">
+      <species metaid="M_MAM02832r" sboTerm="SBO:0000247" id="M_MAM02832r" name="retinal" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H28O">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02832r">
+            <rdf:Description rdf:about="#M_MAM02832r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/retinal"/>
@@ -80018,10 +80054,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02833c" sboTerm="SBO:0000247" id="MAM02833c" name="retinoate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H27O2">
+      <species metaid="M_MAM02833c" sboTerm="SBO:0000247" id="M_MAM02833c" name="retinoate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H27O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02833c">
+            <rdf:Description rdf:about="#M_MAM02833c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/retn"/>
@@ -80037,10 +80073,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02833r" sboTerm="SBO:0000247" id="MAM02833r" name="retinoate" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H27O2">
+      <species metaid="M_MAM02833r" sboTerm="SBO:0000247" id="M_MAM02833r" name="retinoate" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H27O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02833r">
+            <rdf:Description rdf:about="#M_MAM02833r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/retn"/>
@@ -80056,10 +80092,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02833e" sboTerm="SBO:0000247" id="MAM02833e" name="retinoate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H27O2">
+      <species metaid="M_MAM02833e" sboTerm="SBO:0000247" id="M_MAM02833e" name="retinoate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H27O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02833e">
+            <rdf:Description rdf:about="#M_MAM02833e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/retn"/>
@@ -80075,10 +80111,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02834c" sboTerm="SBO:0000247" id="MAM02834c" name="retinol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H30O">
+      <species metaid="M_MAM02834c" sboTerm="SBO:0000247" id="M_MAM02834c" name="retinol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H30O">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02834c">
+            <rdf:Description rdf:about="#M_MAM02834c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/retinol"/>
@@ -80095,10 +80131,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02834r" sboTerm="SBO:0000247" id="MAM02834r" name="retinol" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H30O">
+      <species metaid="M_MAM02834r" sboTerm="SBO:0000247" id="M_MAM02834r" name="retinol" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H30O">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02834r">
+            <rdf:Description rdf:about="#M_MAM02834r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/retinol"/>
@@ -80115,10 +80151,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02834e" sboTerm="SBO:0000247" id="MAM02834e" name="retinol" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H30O">
+      <species metaid="M_MAM02834e" sboTerm="SBO:0000247" id="M_MAM02834e" name="retinol" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H30O">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02834e">
+            <rdf:Description rdf:about="#M_MAM02834e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/retinol"/>
@@ -80135,10 +80171,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02835c" sboTerm="SBO:0000247" id="MAM02835c" name="retinoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H58N7O17P3S">
+      <species metaid="M_MAM02835c" sboTerm="SBO:0000247" id="M_MAM02835c" name="retinoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H58N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02835c">
+            <rdf:Description rdf:about="#M_MAM02835c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/retncoa"/>
@@ -80152,10 +80188,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02836c" sboTerm="SBO:0000247" id="MAM02836c" name="retinoyl-glucuronide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C26H35O8">
+      <species metaid="M_MAM02836c" sboTerm="SBO:0000247" id="M_MAM02836c" name="retinoyl-glucuronide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C26H35O8">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02836c">
+            <rdf:Description rdf:about="#M_MAM02836c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/retnglc"/>
@@ -80171,10 +80207,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02836r" sboTerm="SBO:0000247" id="MAM02836r" name="retinoyl-glucuronide" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C26H35O8">
+      <species metaid="M_MAM02836r" sboTerm="SBO:0000247" id="M_MAM02836r" name="retinoyl-glucuronide" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C26H35O8">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02836r">
+            <rdf:Description rdf:about="#M_MAM02836r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/retnglc"/>
@@ -80190,10 +80226,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02836e" sboTerm="SBO:0000247" id="MAM02836e" name="retinoyl-glucuronide" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C26H35O8">
+      <species metaid="M_MAM02836e" sboTerm="SBO:0000247" id="M_MAM02836e" name="retinoyl-glucuronide" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C26H35O8">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02836e">
+            <rdf:Description rdf:about="#M_MAM02836e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/retnglc"/>
@@ -80209,10 +80245,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02837e" sboTerm="SBO:0000247" id="MAM02837e" name="retinyl palmitate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C36H60O2">
+      <species metaid="M_MAM02837e" sboTerm="SBO:0000247" id="M_MAM02837e" name="retinyl palmitate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C36H60O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02837e">
+            <rdf:Description rdf:about="#M_MAM02837e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/PROTEIN"/>
@@ -80224,10 +80260,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02838c" sboTerm="SBO:0000247" id="MAM02838c" name="retinyl-ester" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H29O2R">
+      <species metaid="M_MAM02838c" sboTerm="SBO:0000247" id="M_MAM02838c" name="retinyl-ester" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H29O2R">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02838c">
+            <rdf:Description rdf:about="#M_MAM02838c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:63410"/>
@@ -80240,10 +80276,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02839c" sboTerm="SBO:0000247" id="MAM02839c" name="reverse triiodthyronine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C15H12I3NO4">
+      <species metaid="M_MAM02839c" sboTerm="SBO:0000247" id="M_MAM02839c" name="reverse triiodthyronine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C15H12I3NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02839c">
+            <rdf:Description rdf:about="#M_MAM02839c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:28774"/>
@@ -80260,10 +80296,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02839r" sboTerm="SBO:0000247" id="MAM02839r" name="reverse triiodthyronine" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C15H12I3NO4">
+      <species metaid="M_MAM02839r" sboTerm="SBO:0000247" id="M_MAM02839r" name="reverse triiodthyronine" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C15H12I3NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02839r">
+            <rdf:Description rdf:about="#M_MAM02839r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:28774"/>
@@ -80280,10 +80316,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02839e" sboTerm="SBO:0000247" id="MAM02839e" name="reverse triiodthyronine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C15H12I3NO4">
+      <species metaid="M_MAM02839e" sboTerm="SBO:0000247" id="M_MAM02839e" name="reverse triiodthyronine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C15H12I3NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02839e">
+            <rdf:Description rdf:about="#M_MAM02839e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:28774"/>
@@ -80300,10 +80336,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02840c" sboTerm="SBO:0000247" id="MAM02840c" name="rhodopsin" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H28R">
+      <species metaid="M_MAM02840c" sboTerm="SBO:0000247" id="M_MAM02840c" name="rhodopsin" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H28R">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02840c">
+            <rdf:Description rdf:about="#M_MAM02840c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C00778"/>
@@ -80315,10 +80351,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02841c" sboTerm="SBO:0000247" id="MAM02841c" name="ribitol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H12O5">
+      <species metaid="M_MAM02841c" sboTerm="SBO:0000247" id="M_MAM02841c" name="ribitol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H12O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02841c">
+            <rdf:Description rdf:about="#M_MAM02841c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/rbt"/>
@@ -80334,10 +80370,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02841e" sboTerm="SBO:0000247" id="MAM02841e" name="ribitol" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H12O5">
+      <species metaid="M_MAM02841e" sboTerm="SBO:0000247" id="M_MAM02841e" name="ribitol" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H12O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02841e">
+            <rdf:Description rdf:about="#M_MAM02841e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/rbt"/>
@@ -80353,10 +80389,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02842c" sboTerm="SBO:0000247" id="MAM02842c" name="riboflavin" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C17H20N4O6">
+      <species metaid="M_MAM02842c" sboTerm="SBO:0000247" id="M_MAM02842c" name="riboflavin" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C17H20N4O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02842c">
+            <rdf:Description rdf:about="#M_MAM02842c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ribflv"/>
@@ -80372,10 +80408,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02842e" sboTerm="SBO:0000247" id="MAM02842e" name="riboflavin" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C17H20N4O6">
+      <species metaid="M_MAM02842e" sboTerm="SBO:0000247" id="M_MAM02842e" name="riboflavin" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C17H20N4O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02842e">
+            <rdf:Description rdf:about="#M_MAM02842e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ribflv"/>
@@ -80391,10 +80427,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02843c" sboTerm="SBO:0000247" id="MAM02843c" name="ribose" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H10O5">
+      <species metaid="M_MAM02843c" sboTerm="SBO:0000247" id="M_MAM02843c" name="ribose" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H10O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02843c">
+            <rdf:Description rdf:about="#M_MAM02843c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/rib__D"/>
@@ -80410,10 +80446,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02843e" sboTerm="SBO:0000247" id="MAM02843e" name="ribose" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H10O5">
+      <species metaid="M_MAM02843e" sboTerm="SBO:0000247" id="M_MAM02843e" name="ribose" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H10O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02843e">
+            <rdf:Description rdf:about="#M_MAM02843e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/rib__D"/>
@@ -80429,10 +80465,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02844c" sboTerm="SBO:0000247" id="MAM02844c" name="ribose-1-phosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C5H9O8P">
+      <species metaid="M_MAM02844c" sboTerm="SBO:0000247" id="M_MAM02844c" name="ribose-1-phosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C5H9O8P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02844c">
+            <rdf:Description rdf:about="#M_MAM02844c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/r1p"/>
@@ -80447,10 +80483,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02845c" sboTerm="SBO:0000247" id="MAM02845c" name="ribose-5-phosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C5H9O8P">
+      <species metaid="M_MAM02845c" sboTerm="SBO:0000247" id="M_MAM02845c" name="ribose-5-phosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C5H9O8P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02845c">
+            <rdf:Description rdf:about="#M_MAM02845c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/r5p"/>
@@ -80466,10 +80502,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02845r" sboTerm="SBO:0000247" id="MAM02845r" name="ribose-5-phosphate" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C5H9O8P">
+      <species metaid="M_MAM02845r" sboTerm="SBO:0000247" id="M_MAM02845r" name="ribose-5-phosphate" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C5H9O8P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02845r">
+            <rdf:Description rdf:about="#M_MAM02845r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/r5p"/>
@@ -80485,10 +80521,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02846c" sboTerm="SBO:0000247" id="MAM02846c" name="ribulose-5-phosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C5H9O8P">
+      <species metaid="M_MAM02846c" sboTerm="SBO:0000247" id="M_MAM02846c" name="ribulose-5-phosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C5H9O8P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02846c">
+            <rdf:Description rdf:about="#M_MAM02846c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ru5p__D"/>
@@ -80504,10 +80540,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02846r" sboTerm="SBO:0000247" id="MAM02846r" name="ribulose-5-phosphate" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C5H9O8P">
+      <species metaid="M_MAM02846r" sboTerm="SBO:0000247" id="M_MAM02846r" name="ribulose-5-phosphate" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C5H9O8P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02846r">
+            <rdf:Description rdf:about="#M_MAM02846r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ru5p__D"/>
@@ -80523,10 +80559,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02847c" sboTerm="SBO:0000247" id="MAM02847c" name="RNA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C15H22O19P3R3">
+      <species metaid="M_MAM02847c" sboTerm="SBO:0000247" id="M_MAM02847c" name="RNA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C15H22O19P3R3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02847c">
+            <rdf:Description rdf:about="#M_MAM02847c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C00046"/>
@@ -80539,10 +80575,26 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02848c" sboTerm="SBO:0000247" id="MAM02848c" name="RNA-3-terminal-phosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C15H22O19P3R3">
+      <species metaid="M_MAM02847n" sboTerm="SBO:0000247" id="M_MAM02847n" name="RNA" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C15H22O19P3R3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02848c">
+            <rdf:Description rdf:about="#M_MAM02847n">
+              <bqbiol:is>
+                <rdf:Bag>
+                  <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C00046"/>
+                  <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM1248"/>
+                  <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM90337"/>
+                  <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M02847"/>
+                </rdf:Bag>
+              </bqbiol:is>
+            </rdf:Description>
+          </rdf:RDF>
+        </annotation>
+      </species>
+      <species metaid="M_MAM02848c" sboTerm="SBO:0000247" id="M_MAM02848c" name="RNA-3-terminal-phosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C15H22O19P3R3">
+        <annotation>
+          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+            <rdf:Description rdf:about="#M_MAM02848c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C03638"/>
@@ -80554,10 +80606,10 @@
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+      <species metaid="M_MAM02849c" sboTerm="SBO:0000247" id="M_MAM02849c" name="RNA-terminal-2,3-cyclic-phosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C15H21O18P3R3">
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-            <rdf:Description rdf:about="#MAM02849c">
+            <rdf:Description rdf:about="#M_MAM02849c">
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                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C04312"/>
@@ -80569,10 +80621,10 @@
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-      <species metaid="MAM02850c" sboTerm="SBO:0000247" id="MAM02850c" name="S-(1,2-dichlorovinyl)glutathione" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C12H16Cl2N3O6S">
+      <species metaid="M_MAM02850c" sboTerm="SBO:0000247" id="M_MAM02850c" name="S-(1,2-dichlorovinyl)glutathione" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C12H16Cl2N3O6S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02850c">
+            <rdf:Description rdf:about="#M_MAM02850c">
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                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C14868"/>
@@ -80584,10 +80636,10 @@
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-      <species metaid="MAM02851c" sboTerm="SBO:0000247" id="MAM02851c" name="S-(11-hydroxy-9-deoxy-delta12-PGD2)-glutathione" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C30H49N3O10S">
+      <species metaid="M_MAM02851c" sboTerm="SBO:0000247" id="M_MAM02851c" name="S-(11-hydroxy-9-deoxy-delta12-PGD2)-glutathione" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C30H49N3O10S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02851c">
+            <rdf:Description rdf:about="#M_MAM02851c">
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                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM81225"/>
@@ -80599,10 +80651,10 @@
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+      <species metaid="M_MAM02852c" sboTerm="SBO:0000247" id="M_MAM02852c" name="S-(11-OH-9-deoxy-delta9,12-PGD2)-glutathione" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C30H47N3O10S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02852c">
+            <rdf:Description rdf:about="#M_MAM02852c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM81226"/>
@@ -80614,10 +80666,10 @@
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-      <species metaid="MAM02853c" sboTerm="SBO:0000247" id="MAM02853c" name="S-(2,2-dichloro-1-hydroxy)ethyl glutathione" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C12H19Cl2N3O7S">
+      <species metaid="M_MAM02853c" sboTerm="SBO:0000247" id="M_MAM02853c" name="S-(2,2-dichloro-1-hydroxy)ethyl glutathione" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C12H19Cl2N3O7S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02853c">
+            <rdf:Description rdf:about="#M_MAM02853c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C14861"/>
@@ -80629,10 +80681,10 @@
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-      <species metaid="MAM02854c" sboTerm="SBO:0000247" id="MAM02854c" name="S-(2-chloroacetyl)glutathione" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C12H17ClN3O7S">
+      <species metaid="M_MAM02854c" sboTerm="SBO:0000247" id="M_MAM02854c" name="S-(2-chloroacetyl)glutathione" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C12H17ClN3O7S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02854c">
+            <rdf:Description rdf:about="#M_MAM02854c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C14864"/>
@@ -80644,10 +80696,10 @@
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-      <species metaid="MAM02855c" sboTerm="SBO:0000247" id="MAM02855c" name="S-(2-hydroxyethyl)glutathione" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C12H20N3O7S">
+      <species metaid="M_MAM02855c" sboTerm="SBO:0000247" id="M_MAM02855c" name="S-(2-hydroxyethyl)glutathione" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C12H20N3O7S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02855c">
+            <rdf:Description rdf:about="#M_MAM02855c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:35896"/>
@@ -80660,10 +80712,10 @@
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-      <species metaid="MAM02856m" sboTerm="SBO:0000247" id="MAM02856m" name="S-(2-methylbutanoyl)-dihydrolipoamide" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C13H25NO2S2">
+      <species metaid="M_MAM02856m" sboTerm="SBO:0000247" id="M_MAM02856m" name="S-(2-methylbutanoyl)-dihydrolipoamide" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C13H25NO2S2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02856m">
+            <rdf:Description rdf:about="#M_MAM02856m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:28692"/>
@@ -80677,10 +80729,10 @@
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         </annotation>
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-      <species metaid="MAM02857m" sboTerm="SBO:0000247" id="MAM02857m" name="S-(2-methylpropanoyl)-dihydrolipoamide" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C12H23NO2S2">
+      <species metaid="M_MAM02857m" sboTerm="SBO:0000247" id="M_MAM02857m" name="S-(2-methylpropanoyl)-dihydrolipoamide" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C12H23NO2S2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02857m">
+            <rdf:Description rdf:about="#M_MAM02857m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/2mpdhl"/>
@@ -80695,10 +80747,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM02858m" sboTerm="SBO:0000247" id="MAM02858m" name="S-(3-methylbutanoyl)-dihydrolipoamide" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C13H25NO2S2">
+      <species metaid="M_MAM02858m" sboTerm="SBO:0000247" id="M_MAM02858m" name="S-(3-methylbutanoyl)-dihydrolipoamide" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C13H25NO2S2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02858m">
+            <rdf:Description rdf:about="#M_MAM02858m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:27462"/>
@@ -80712,10 +80764,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02859c" sboTerm="SBO:0000247" id="MAM02859c" name="S-(9-deoxy-delta12-PGD2)-glutathione" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C30H47N3O10S">
+      <species metaid="M_MAM02859c" sboTerm="SBO:0000247" id="M_MAM02859c" name="S-(9-deoxy-delta12-PGD2)-glutathione" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C30H47N3O10S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02859c">
+            <rdf:Description rdf:about="#M_MAM02859c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM81238"/>
@@ -80727,10 +80779,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02860c" sboTerm="SBO:0000247" id="MAM02860c" name="S-(9-deoxy-delta9,12-PGD2)-glutathione" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C30H45N3O10S">
+      <species metaid="M_MAM02860c" sboTerm="SBO:0000247" id="M_MAM02860c" name="S-(9-deoxy-delta9,12-PGD2)-glutathione" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C30H45N3O10S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02860c">
+            <rdf:Description rdf:about="#M_MAM02860c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM81239"/>
@@ -80742,10 +80794,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02861c" sboTerm="SBO:0000247" id="MAM02861c" name="S-(formylmethyl)glutathione" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C12H17N3O7S">
+      <species metaid="M_MAM02861c" sboTerm="SBO:0000247" id="M_MAM02861c" name="S-(formylmethyl)glutathione" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C12H17N3O7S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02861c">
+            <rdf:Description rdf:about="#M_MAM02861c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C14871"/>
@@ -80757,10 +80809,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM02862c" sboTerm="SBO:0000247" id="MAM02862c" name="S-(PGA1)-glutathione" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C30H47N3O10S">
+      <species metaid="M_MAM02862c" sboTerm="SBO:0000247" id="M_MAM02862c" name="S-(PGA1)-glutathione" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C30H47N3O10S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02862c">
+            <rdf:Description rdf:about="#M_MAM02862c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C11304"/>
@@ -80773,10 +80825,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM02863c" sboTerm="SBO:0000247" id="MAM02863c" name="S-(PGA2)-glutathione" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C30H45N3O10S">
+      <species metaid="M_MAM02863c" sboTerm="SBO:0000247" id="M_MAM02863c" name="S-(PGA2)-glutathione" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C30H45N3O10S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02863c">
+            <rdf:Description rdf:about="#M_MAM02863c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM81249"/>
@@ -80788,10 +80840,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM02864c" sboTerm="SBO:0000247" id="MAM02864c" name="S-(PGJ2)-glutathione" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C30H45N3O10S">
+      <species metaid="M_MAM02864c" sboTerm="SBO:0000247" id="M_MAM02864c" name="S-(PGJ2)-glutathione" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C30H45N3O10S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02864c">
+            <rdf:Description rdf:about="#M_MAM02864c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM81250"/>
@@ -80803,10 +80855,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM02865c" sboTerm="SBO:0000247" id="MAM02865c" name="S-[2-carboxy-1-(1H-imidazol-4-yl)ethyl]-3-thiolactate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C9H10N2O5S">
+      <species metaid="M_MAM02865c" sboTerm="SBO:0000247" id="M_MAM02865c" name="S-[2-carboxy-1-(1H-imidazol-4-yl)ethyl]-3-thiolactate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C9H10N2O5S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02865c">
+            <rdf:Description rdf:about="#M_MAM02865c">
               <bqbiol:is>
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                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM169049"/>
@@ -80818,10 +80870,10 @@
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+      <species metaid="M_MAM02866c" sboTerm="SBO:0000247" id="M_MAM02866c" name="S-[2-carboxy-1-(1H-imidazol-4-yl)ethyl]glutathione" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C16H21N5O8S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02866c">
+            <rdf:Description rdf:about="#M_MAM02866c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM169050"/>
@@ -80832,10 +80884,10 @@
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-      <species metaid="MAM02867c" sboTerm="SBO:0000247" id="MAM02867c" name="S-[2-carboxy-1-(1H-imidazol-4-yl)ethyl]-L-cysteine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C9H12N3O4S">
+      <species metaid="M_MAM02867c" sboTerm="SBO:0000247" id="M_MAM02867c" name="S-[2-carboxy-1-(1H-imidazol-4-yl)ethyl]-L-cysteine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C9H12N3O4S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02867c">
+            <rdf:Description rdf:about="#M_MAM02867c">
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                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM165124"/>
@@ -80846,10 +80898,10 @@
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-      <species metaid="MAM02868m" sboTerm="SBO:0000247" id="MAM02868m" name="saccharopine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C11H19N2O6">
+      <species metaid="M_MAM02868m" sboTerm="SBO:0000247" id="M_MAM02868m" name="saccharopine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C11H19N2O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02868m">
+            <rdf:Description rdf:about="#M_MAM02868m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/saccrp__L"/>
@@ -80864,10 +80916,10 @@
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-      <species metaid="MAM02869m" sboTerm="SBO:0000247" id="MAM02869m" name="S-acetyldihydrolipoamide" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H19NO2S2">
+      <species metaid="M_MAM02869m" sboTerm="SBO:0000247" id="M_MAM02869m" name="S-acetyldihydrolipoamide" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H19NO2S2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02869m">
+            <rdf:Description rdf:about="#M_MAM02869m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:16807"/>
@@ -80881,10 +80933,10 @@
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-      <species metaid="MAM02870c" sboTerm="SBO:0000247" id="MAM02870c" name="S-adenosylmethioninamine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="C14H24N6O3S">
+      <species metaid="M_MAM02870c" sboTerm="SBO:0000247" id="M_MAM02870c" name="S-adenosylmethioninamine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="C14H24N6O3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02870c">
+            <rdf:Description rdf:about="#M_MAM02870c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ametam"/>
@@ -80900,10 +80952,10 @@
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-      <species metaid="MAM02871c" sboTerm="SBO:0000247" id="MAM02871c" name="SAH" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C14H20N6O5S">
+      <species metaid="M_MAM02871c" sboTerm="SBO:0000247" id="M_MAM02871c" name="SAH" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C14H20N6O5S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02871c">
+            <rdf:Description rdf:about="#M_MAM02871c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ahcys"/>
@@ -80920,10 +80972,10 @@
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+      <species metaid="M_MAM02871m" sboTerm="SBO:0000247" id="M_MAM02871m" name="SAH" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C14H20N6O5S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02871m">
+            <rdf:Description rdf:about="#M_MAM02871m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ahcys"/>
@@ -80940,10 +80992,10 @@
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+      <species metaid="M_MAM02871n" sboTerm="SBO:0000247" id="M_MAM02871n" name="SAH" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C14H20N6O5S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02871n">
+            <rdf:Description rdf:about="#M_MAM02871n">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ahcys"/>
@@ -80960,10 +81012,10 @@
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+      <species metaid="M_MAM02871r" sboTerm="SBO:0000247" id="M_MAM02871r" name="SAH" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C14H20N6O5S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02871r">
+            <rdf:Description rdf:about="#M_MAM02871r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ahcys"/>
@@ -80980,10 +81032,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM02872c" sboTerm="SBO:0000247" id="MAM02872c" name="SAICAR" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C13H15N4O12P">
+      <species metaid="M_MAM02872c" sboTerm="SBO:0000247" id="M_MAM02872c" name="SAICAR" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C13H15N4O12P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02872c">
+            <rdf:Description rdf:about="#M_MAM02872c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/25aics"/>
@@ -80998,10 +81050,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM02875c" sboTerm="SBO:0000247" id="MAM02875c" name="salsolinol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C10H14NO2">
+      <species metaid="M_MAM02875c" sboTerm="SBO:0000247" id="M_MAM02875c" name="salsolinol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C10H14NO2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02875c">
+            <rdf:Description rdf:about="#M_MAM02875c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:123715"/>
@@ -81016,10 +81068,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02876c" sboTerm="SBO:0000247" id="MAM02876c" name="salsolinol-1-carboxylate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C11H13NO4">
+      <species metaid="M_MAM02876c" sboTerm="SBO:0000247" id="M_MAM02876c" name="salsolinol-1-carboxylate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C11H13NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02876c">
+            <rdf:Description rdf:about="#M_MAM02876c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM81437"/>
@@ -81031,10 +81083,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM02877c" sboTerm="SBO:0000247" id="MAM02877c" name="SAM" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C15H23N6O5S">
+      <species metaid="M_MAM02877c" sboTerm="SBO:0000247" id="M_MAM02877c" name="SAM" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C15H23N6O5S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02877c">
+            <rdf:Description rdf:about="#M_MAM02877c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/amet"/>
@@ -81050,10 +81102,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM02877m" sboTerm="SBO:0000247" id="MAM02877m" name="SAM" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C15H23N6O5S">
+      <species metaid="M_MAM02877m" sboTerm="SBO:0000247" id="M_MAM02877m" name="SAM" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C15H23N6O5S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02877m">
+            <rdf:Description rdf:about="#M_MAM02877m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/amet"/>
@@ -81069,10 +81121,10 @@
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         </annotation>
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-      <species metaid="MAM02877n" sboTerm="SBO:0000247" id="MAM02877n" name="SAM" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C15H23N6O5S">
+      <species metaid="M_MAM02877n" sboTerm="SBO:0000247" id="M_MAM02877n" name="SAM" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C15H23N6O5S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02877n">
+            <rdf:Description rdf:about="#M_MAM02877n">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/amet"/>
@@ -81088,10 +81140,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02877r" sboTerm="SBO:0000247" id="MAM02877r" name="SAM" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C15H23N6O5S">
+      <species metaid="M_MAM02877r" sboTerm="SBO:0000247" id="M_MAM02877r" name="SAM" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C15H23N6O5S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02877r">
+            <rdf:Description rdf:about="#M_MAM02877r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/amet"/>
@@ -81107,10 +81159,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM02878m" sboTerm="SBO:0000247" id="MAM02878m" name="S-aminomethyldihydrolipoamide" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C9H21N2OS2">
+      <species metaid="M_MAM02878m" sboTerm="SBO:0000247" id="M_MAM02878m" name="S-aminomethyldihydrolipoamide" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C9H21N2OS2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02878m">
+            <rdf:Description rdf:about="#M_MAM02878m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/alpam"/>
@@ -81125,10 +81177,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02879m" sboTerm="SBO:0000247" id="MAM02879m" name="S-aminomethyldihydrolipoylprotein" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="CH6NS2X">
+      <species metaid="M_MAM02879m" sboTerm="SBO:0000247" id="M_MAM02879m" name="S-aminomethyldihydrolipoylprotein" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="CH6NS2X">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02879m">
+            <rdf:Description rdf:about="#M_MAM02879m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/alpro"/>
@@ -81142,10 +81194,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02880c" sboTerm="SBO:0000247" id="MAM02880c" name="sarcosine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H7NO2">
+      <species metaid="M_MAM02880c" sboTerm="SBO:0000247" id="M_MAM02880c" name="sarcosine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H7NO2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02880c">
+            <rdf:Description rdf:about="#M_MAM02880c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/sarcs"/>
@@ -81161,10 +81213,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02880m" sboTerm="SBO:0000247" id="MAM02880m" name="sarcosine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H7NO2">
+      <species metaid="M_MAM02880m" sboTerm="SBO:0000247" id="M_MAM02880m" name="sarcosine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H7NO2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02880m">
+            <rdf:Description rdf:about="#M_MAM02880m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/sarcs"/>
@@ -81180,10 +81232,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02880x" sboTerm="SBO:0000247" id="MAM02880x" name="sarcosine" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H7NO2">
+      <species metaid="M_MAM02880x" sboTerm="SBO:0000247" id="M_MAM02880x" name="sarcosine" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H7NO2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02880x">
+            <rdf:Description rdf:about="#M_MAM02880x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/sarcs"/>
@@ -81199,10 +81251,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02880e" sboTerm="SBO:0000247" id="MAM02880e" name="sarcosine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H7NO2">
+      <species metaid="M_MAM02880e" sboTerm="SBO:0000247" id="M_MAM02880e" name="sarcosine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H7NO2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02880e">
+            <rdf:Description rdf:about="#M_MAM02880e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/sarcs"/>
@@ -81218,10 +81270,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02881c" sboTerm="SBO:0000247" id="MAM02881c" name="se-adenosyl-L-selenohomocysteine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C14H20N6O5Se">
+      <species metaid="M_MAM02881c" sboTerm="SBO:0000247" id="M_MAM02881c" name="se-adenosyl-L-selenohomocysteine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C14H20N6O5Se">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02881c">
+            <rdf:Description rdf:about="#M_MAM02881c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/seahcys"/>
@@ -81235,10 +81287,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02881n" sboTerm="SBO:0000247" id="MAM02881n" name="se-adenosyl-L-selenohomocysteine" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C14H20N6O5Se">
+      <species metaid="M_MAM02881n" sboTerm="SBO:0000247" id="M_MAM02881n" name="se-adenosyl-L-selenohomocysteine" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C14H20N6O5Se">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02881n">
+            <rdf:Description rdf:about="#M_MAM02881n">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/seahcys"/>
@@ -81252,10 +81304,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02882c" sboTerm="SBO:0000247" id="MAM02882c" name="se-adenosylselenomethionine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C15H23N6O5Se">
+      <species metaid="M_MAM02882c" sboTerm="SBO:0000247" id="M_MAM02882c" name="se-adenosylselenomethionine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C15H23N6O5Se">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02882c">
+            <rdf:Description rdf:about="#M_MAM02882c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/seasmet"/>
@@ -81270,10 +81322,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02882n" sboTerm="SBO:0000247" id="MAM02882n" name="se-adenosylselenomethionine" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C15H23N6O5Se">
+      <species metaid="M_MAM02882n" sboTerm="SBO:0000247" id="M_MAM02882n" name="se-adenosylselenomethionine" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C15H23N6O5Se">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02882n">
+            <rdf:Description rdf:about="#M_MAM02882n">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/seasmet"/>
@@ -81288,10 +81340,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02883c" sboTerm="SBO:0000247" id="MAM02883c" name="sedoheptulose-1,7-bisphosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C7H12O13P2">
+      <species metaid="M_MAM02883c" sboTerm="SBO:0000247" id="M_MAM02883c" name="sedoheptulose-1,7-bisphosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C7H12O13P2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02883c">
+            <rdf:Description rdf:about="#M_MAM02883c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:17969"/>
@@ -81306,10 +81358,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02884c" sboTerm="SBO:0000247" id="MAM02884c" name="sedoheptulose-7-phosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C7H13O10P">
+      <species metaid="M_MAM02884c" sboTerm="SBO:0000247" id="M_MAM02884c" name="sedoheptulose-7-phosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C7H13O10P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02884c">
+            <rdf:Description rdf:about="#M_MAM02884c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/s7p"/>
@@ -81324,10 +81376,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02885c" sboTerm="SBO:0000247" id="MAM02885c" name="selenate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="O4Se">
+      <species metaid="M_MAM02885c" sboTerm="SBO:0000247" id="M_MAM02885c" name="selenate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="O4Se">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02885c">
+            <rdf:Description rdf:about="#M_MAM02885c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/sel"/>
@@ -81342,10 +81394,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02885e" sboTerm="SBO:0000247" id="MAM02885e" name="selenate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="O4Se">
+      <species metaid="M_MAM02885e" sboTerm="SBO:0000247" id="M_MAM02885e" name="selenate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="O4Se">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02885e">
+            <rdf:Description rdf:about="#M_MAM02885e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/sel"/>
@@ -81360,10 +81412,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02886c" sboTerm="SBO:0000247" id="MAM02886c" name="selenide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="HSe">
+      <species metaid="M_MAM02886c" sboTerm="SBO:0000247" id="M_MAM02886c" name="selenide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="HSe">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02886c">
+            <rdf:Description rdf:about="#M_MAM02886c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/seln"/>
@@ -81378,10 +81430,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02887c" sboTerm="SBO:0000247" id="MAM02887c" name="selenite" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="SeO3">
+      <species metaid="M_MAM02887c" sboTerm="SBO:0000247" id="M_MAM02887c" name="selenite" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="SeO3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02887c">
+            <rdf:Description rdf:about="#M_MAM02887c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:18212"/>
@@ -81394,10 +81446,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02888c" sboTerm="SBO:0000247" id="MAM02888c" name="selenocystathionine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H14N2O4Se">
+      <species metaid="M_MAM02888c" sboTerm="SBO:0000247" id="M_MAM02888c" name="selenocystathionine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H14N2O4Se">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02888c">
+            <rdf:Description rdf:about="#M_MAM02888c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/selcyst"/>
@@ -81412,10 +81464,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02889c" sboTerm="SBO:0000247" id="MAM02889c" name="selenocysteine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H7NO2Se">
+      <species metaid="M_MAM02889c" sboTerm="SBO:0000247" id="M_MAM02889c" name="selenocysteine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H7NO2Se">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02889c">
+            <rdf:Description rdf:about="#M_MAM02889c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/selcys"/>
@@ -81430,10 +81482,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02890c" sboTerm="SBO:0000247" id="MAM02890c" name="selenohomocysteine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H9NO2Se">
+      <species metaid="M_MAM02890c" sboTerm="SBO:0000247" id="M_MAM02890c" name="selenohomocysteine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H9NO2Se">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02890c">
+            <rdf:Description rdf:about="#M_MAM02890c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/selhcys"/>
@@ -81450,10 +81502,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02891c" sboTerm="SBO:0000247" id="MAM02891c" name="selenomethionine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H11NO2Se">
+      <species metaid="M_MAM02891c" sboTerm="SBO:0000247" id="M_MAM02891c" name="selenomethionine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H11NO2Se">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02891c">
+            <rdf:Description rdf:about="#M_MAM02891c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/selmeth"/>
@@ -81470,10 +81522,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02892c" sboTerm="SBO:0000247" id="MAM02892c" name="selenomethionine-se-oxide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H11NO3Se">
+      <species metaid="M_MAM02892c" sboTerm="SBO:0000247" id="M_MAM02892c" name="selenomethionine-se-oxide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H11NO3Se">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02892c">
+            <rdf:Description rdf:about="#M_MAM02892c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C05708"/>
@@ -81487,10 +81539,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02893c" sboTerm="SBO:0000247" id="MAM02893c" name="selenomethionyl-tRNA(met)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C5H11NOSeR">
+      <species metaid="M_MAM02893c" sboTerm="SBO:0000247" id="M_MAM02893c" name="selenomethionyl-tRNA(met)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C5H11NOSeR">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02893c">
+            <rdf:Description rdf:about="#M_MAM02893c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:9100"/>
@@ -81503,10 +81555,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02894c" sboTerm="SBO:0000247" id="MAM02894c" name="selenophosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="H2O3PSe">
+      <species metaid="M_MAM02894c" sboTerm="SBO:0000247" id="M_MAM02894c" name="selenophosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="H2O3PSe">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02894c">
+            <rdf:Description rdf:about="#M_MAM02894c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/selnp"/>
@@ -81521,10 +81573,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02895c" sboTerm="SBO:0000247" id="MAM02895c" name="se-methyl-L-selenocysteine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H9NO2Se">
+      <species metaid="M_MAM02895c" sboTerm="SBO:0000247" id="M_MAM02895c" name="se-methyl-L-selenocysteine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H9NO2Se">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02895c">
+            <rdf:Description rdf:about="#M_MAM02895c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:9068"/>
@@ -81537,10 +81589,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02896c" sboTerm="SBO:0000247" id="MAM02896c" name="serine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H7NO3">
+      <species metaid="M_MAM02896c" sboTerm="SBO:0000247" id="M_MAM02896c" name="serine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H7NO3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02896c">
+            <rdf:Description rdf:about="#M_MAM02896c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ser__L"/>
@@ -81557,10 +81609,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02896l" sboTerm="SBO:0000247" id="MAM02896l" name="serine" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H7NO3">
+      <species metaid="M_MAM02896l" sboTerm="SBO:0000247" id="M_MAM02896l" name="serine" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H7NO3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02896l">
+            <rdf:Description rdf:about="#M_MAM02896l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ser__L"/>
@@ -81577,10 +81629,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02896m" sboTerm="SBO:0000247" id="MAM02896m" name="serine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H7NO3">
+      <species metaid="M_MAM02896m" sboTerm="SBO:0000247" id="M_MAM02896m" name="serine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H7NO3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02896m">
+            <rdf:Description rdf:about="#M_MAM02896m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ser__L"/>
@@ -81597,10 +81649,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02896x" sboTerm="SBO:0000247" id="MAM02896x" name="serine" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H7NO3">
+      <species metaid="M_MAM02896x" sboTerm="SBO:0000247" id="M_MAM02896x" name="serine" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H7NO3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02896x">
+            <rdf:Description rdf:about="#M_MAM02896x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ser__L"/>
@@ -81617,10 +81669,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02896e" sboTerm="SBO:0000247" id="MAM02896e" name="serine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H7NO3">
+      <species metaid="M_MAM02896e" sboTerm="SBO:0000247" id="M_MAM02896e" name="serine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H7NO3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02896e">
+            <rdf:Description rdf:about="#M_MAM02896e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ser__L"/>
@@ -81637,10 +81689,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02897c" sboTerm="SBO:0000247" id="MAM02897c" name="serotonin" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C10H13N2O">
+      <species metaid="M_MAM02897c" sboTerm="SBO:0000247" id="M_MAM02897c" name="serotonin" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C10H13N2O">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02897c">
+            <rdf:Description rdf:about="#M_MAM02897c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/srtn"/>
@@ -81656,10 +81708,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02897e" sboTerm="SBO:0000247" id="MAM02897e" name="serotonin" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C10H13N2O">
+      <species metaid="M_MAM02897e" sboTerm="SBO:0000247" id="M_MAM02897e" name="serotonin" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C10H13N2O">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02897e">
+            <rdf:Description rdf:about="#M_MAM02897e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/srtn"/>
@@ -81675,10 +81727,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02898c" sboTerm="SBO:0000247" id="MAM02898c" name="S-farnesyl-protein" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H30N2O2SR2">
+      <species metaid="M_MAM02898c" sboTerm="SBO:0000247" id="M_MAM02898c" name="S-farnesyl-protein" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H30N2O2SR2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02898c">
+            <rdf:Description rdf:about="#M_MAM02898c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C20120"/>
@@ -81690,10 +81742,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02899m" sboTerm="SBO:0000247" id="MAM02899m" name="S-glutaryldihydrolipoamide" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C13H22NO4S2">
+      <species metaid="M_MAM02899m" sboTerm="SBO:0000247" id="M_MAM02899m" name="S-glutaryldihydrolipoamide" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C13H22NO4S2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02899m">
+            <rdf:Description rdf:about="#M_MAM02899m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:28391"/>
@@ -81707,10 +81759,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02900c" sboTerm="SBO:0000247" id="MAM02900c" name="S-glutathionyl-2-4-dinitrobenzene" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C16H17N5O10S">
+      <species metaid="M_MAM02900c" sboTerm="SBO:0000247" id="M_MAM02900c" name="S-glutathionyl-2-4-dinitrobenzene" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C16H17N5O10S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02900c">
+            <rdf:Description rdf:about="#M_MAM02900c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM162247"/>
@@ -81721,10 +81773,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02900e" sboTerm="SBO:0000247" id="MAM02900e" name="S-glutathionyl-2-4-dinitrobenzene" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C16H17N5O10S">
+      <species metaid="M_MAM02900e" sboTerm="SBO:0000247" id="M_MAM02900e" name="S-glutathionyl-2-4-dinitrobenzene" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C16H17N5O10S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02900e">
+            <rdf:Description rdf:about="#M_MAM02900e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM162247"/>
@@ -81735,10 +81787,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02901c" sboTerm="SBO:0000247" id="MAM02901c" name="S-glutathionyl-ethacrynic acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C23H25Cl2N3O9S">
+      <species metaid="M_MAM02901c" sboTerm="SBO:0000247" id="M_MAM02901c" name="S-glutathionyl-ethacrynic acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C23H25Cl2N3O9S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02901c">
+            <rdf:Description rdf:about="#M_MAM02901c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM162248"/>
@@ -81749,10 +81801,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02901e" sboTerm="SBO:0000247" id="MAM02901e" name="S-glutathionyl-ethacrynic acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C23H25Cl2N3O9S">
+      <species metaid="M_MAM02901e" sboTerm="SBO:0000247" id="M_MAM02901e" name="S-glutathionyl-ethacrynic acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C23H25Cl2N3O9S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02901e">
+            <rdf:Description rdf:about="#M_MAM02901e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM162248"/>
@@ -81763,10 +81815,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02902c" sboTerm="SBO:0000247" id="MAM02902c" name="sialyl(1,3)-sialyl(2,6)-galactosylgloboside" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C72H121N4O43RCO">
+      <species metaid="M_MAM02902c" sboTerm="SBO:0000247" id="M_MAM02902c" name="sialyl(1,3)-sialyl(2,6)-galactosylgloboside" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C72H121N4O43RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02902c">
+            <rdf:Description rdf:about="#M_MAM02902c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/acn13acngalgbside_hs"/>
@@ -81778,10 +81830,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02902g" sboTerm="SBO:0000247" id="MAM02902g" name="sialyl(1,3)-sialyl(2,6)-galactosylgloboside" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C72H121N4O43RCO">
+      <species metaid="M_MAM02902g" sboTerm="SBO:0000247" id="M_MAM02902g" name="sialyl(1,3)-sialyl(2,6)-galactosylgloboside" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C72H121N4O43RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02902g">
+            <rdf:Description rdf:about="#M_MAM02902g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/acn13acngalgbside_hs"/>
@@ -81793,10 +81845,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02902e" sboTerm="SBO:0000247" id="MAM02902e" name="sialyl(1,3)-sialyl(2,6)-galactosylgloboside" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C72H121N4O43RCO">
+      <species metaid="M_MAM02902e" sboTerm="SBO:0000247" id="M_MAM02902e" name="sialyl(1,3)-sialyl(2,6)-galactosylgloboside" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C72H121N4O43RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02902e">
+            <rdf:Description rdf:about="#M_MAM02902e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/acn13acngalgbside_hs"/>
@@ -81808,10 +81860,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02903c" sboTerm="SBO:0000247" id="MAM02903c" name="sialyl(2,3)-sialyl(2,6)-galactosylgloboside" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C72H121N4O43RCO">
+      <species metaid="M_MAM02903c" sboTerm="SBO:0000247" id="M_MAM02903c" name="sialyl(2,3)-sialyl(2,6)-galactosylgloboside" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C72H121N4O43RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02903c">
+            <rdf:Description rdf:about="#M_MAM02903c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/acn23acngalgbside_hs"/>
@@ -81823,10 +81875,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02903g" sboTerm="SBO:0000247" id="MAM02903g" name="sialyl(2,3)-sialyl(2,6)-galactosylgloboside" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C72H121N4O43RCO">
+      <species metaid="M_MAM02903g" sboTerm="SBO:0000247" id="M_MAM02903g" name="sialyl(2,3)-sialyl(2,6)-galactosylgloboside" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C72H121N4O43RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02903g">
+            <rdf:Description rdf:about="#M_MAM02903g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/acn23acngalgbside_hs"/>
@@ -81838,10 +81890,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02903e" sboTerm="SBO:0000247" id="MAM02903e" name="sialyl(2,3)-sialyl(2,6)-galactosylgloboside" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C72H121N4O43RCO">
+      <species metaid="M_MAM02903e" sboTerm="SBO:0000247" id="M_MAM02903e" name="sialyl(2,3)-sialyl(2,6)-galactosylgloboside" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C72H121N4O43RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02903e">
+            <rdf:Description rdf:about="#M_MAM02903e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/acn23acngalgbside_hs"/>
@@ -81853,10 +81905,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02904c" sboTerm="SBO:0000247" id="MAM02904c" name="sialyl-3-paragloboside" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C55H95N3O30RCO">
+      <species metaid="M_MAM02904c" sboTerm="SBO:0000247" id="M_MAM02904c" name="sialyl-3-paragloboside" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C55H95N3O30RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02904c">
+            <rdf:Description rdf:about="#M_MAM02904c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/acngal14acglcgalgluside_hs"/>
@@ -81870,10 +81922,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02904g" sboTerm="SBO:0000247" id="MAM02904g" name="sialyl-3-paragloboside" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C55H95N3O30RCO">
+      <species metaid="M_MAM02904g" sboTerm="SBO:0000247" id="M_MAM02904g" name="sialyl-3-paragloboside" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C55H95N3O30RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02904g">
+            <rdf:Description rdf:about="#M_MAM02904g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/acngal14acglcgalgluside_hs"/>
@@ -81887,10 +81939,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02907c" sboTerm="SBO:0000247" id="MAM02907c" name="sialyl-Tn antigen" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C19H30N2O13X">
+      <species metaid="M_MAM02907c" sboTerm="SBO:0000247" id="M_MAM02907c" name="sialyl-Tn antigen" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C19H30N2O13X">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02907c">
+            <rdf:Description rdf:about="#M_MAM02907c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/sTn_antigen"/>
@@ -81903,10 +81955,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02907g" sboTerm="SBO:0000247" id="MAM02907g" name="sialyl-Tn antigen" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C19H30N2O13X">
+      <species metaid="M_MAM02907g" sboTerm="SBO:0000247" id="M_MAM02907g" name="sialyl-Tn antigen" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C19H30N2O13X">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02907g">
+            <rdf:Description rdf:about="#M_MAM02907g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/sTn_antigen"/>
@@ -81919,10 +81971,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02907e" sboTerm="SBO:0000247" id="MAM02907e" name="sialyl-Tn antigen" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C19H30N2O13X">
+      <species metaid="M_MAM02907e" sboTerm="SBO:0000247" id="M_MAM02907e" name="sialyl-Tn antigen" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C19H30N2O13X">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02907e">
+            <rdf:Description rdf:about="#M_MAM02907e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/sTn_antigen"/>
@@ -81935,10 +81987,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02908c" sboTerm="SBO:0000247" id="MAM02908c" name="SM pool" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H48N2O5PRCO">
+      <species metaid="M_MAM02908c" sboTerm="SBO:0000247" id="M_MAM02908c" name="SM pool" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H48N2O5PRCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02908c">
+            <rdf:Description rdf:about="#M_MAM02908c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/sphmyln_hs"/>
@@ -81953,10 +82005,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02908g" sboTerm="SBO:0000247" id="MAM02908g" name="SM pool" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H48N2O5PRCO">
+      <species metaid="M_MAM02908g" sboTerm="SBO:0000247" id="M_MAM02908g" name="SM pool" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H48N2O5PRCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02908g">
+            <rdf:Description rdf:about="#M_MAM02908g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/sphmyln_hs"/>
@@ -81971,10 +82023,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02908l" sboTerm="SBO:0000247" id="MAM02908l" name="SM pool" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H48N2O5PRCO">
+      <species metaid="M_MAM02908l" sboTerm="SBO:0000247" id="M_MAM02908l" name="SM pool" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H48N2O5PRCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02908l">
+            <rdf:Description rdf:about="#M_MAM02908l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/sphmyln_hs"/>
@@ -81989,10 +82041,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02908r" sboTerm="SBO:0000247" id="MAM02908r" name="SM pool" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H48N2O5PRCO">
+      <species metaid="M_MAM02908r" sboTerm="SBO:0000247" id="M_MAM02908r" name="SM pool" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H48N2O5PRCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02908r">
+            <rdf:Description rdf:about="#M_MAM02908r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/sphmyln_hs"/>
@@ -82007,10 +82059,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM02909e" sboTerm="SBO:0000247" id="MAM02909e" name="SMCFA-blood-pool" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="CHO2R">
+      <species metaid="M_MAM02909e" sboTerm="SBO:0000247" id="M_MAM02909e" name="SMCFA-blood-pool" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="CHO2R">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02909e">
+            <rdf:Description rdf:about="#M_MAM02909e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M02909"/>
@@ -82020,10 +82072,10 @@
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       </species>
-      <species metaid="MAM02910c" sboTerm="SBO:0000247" id="MAM02910c" name="S-methyl-5-thio-D-ribulose-1-phosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H11O7PS">
+      <species metaid="M_MAM02910c" sboTerm="SBO:0000247" id="M_MAM02910c" name="S-methyl-5-thio-D-ribulose-1-phosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H11O7PS">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02910c">
+            <rdf:Description rdf:about="#M_MAM02910c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/5mdru1p"/>
@@ -82038,10 +82090,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02911c" sboTerm="SBO:0000247" id="MAM02911c" name="sn-glycero-3-phospho-1-inositol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C9H18O11P">
+      <species metaid="M_MAM02911c" sboTerm="SBO:0000247" id="M_MAM02911c" name="sn-glycero-3-phospho-1-inositol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C9H18O11P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02911c">
+            <rdf:Description rdf:about="#M_MAM02911c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:18321"/>
@@ -82054,10 +82106,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02912c" sboTerm="SBO:0000247" id="MAM02912c" name="sn-glycerol-3-PC" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H20NO6P">
+      <species metaid="M_MAM02912c" sboTerm="SBO:0000247" id="M_MAM02912c" name="sn-glycerol-3-PC" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H20NO6P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02912c">
+            <rdf:Description rdf:about="#M_MAM02912c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/g3pc"/>
@@ -82074,10 +82126,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02913c" sboTerm="SBO:0000247" id="MAM02913c" name="sn-glycerol-3-PE" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H14NO6P">
+      <species metaid="M_MAM02913c" sboTerm="SBO:0000247" id="M_MAM02913c" name="sn-glycerol-3-PE" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H14NO6P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02913c">
+            <rdf:Description rdf:about="#M_MAM02913c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:16929"/>
@@ -82090,10 +82142,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02914c" sboTerm="SBO:0000247" id="MAM02914c" name="sn-glycerol-3-phosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C3H7O6P">
+      <species metaid="M_MAM02914c" sboTerm="SBO:0000247" id="M_MAM02914c" name="sn-glycerol-3-phosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C3H7O6P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02914c">
+            <rdf:Description rdf:about="#M_MAM02914c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/glyc3p"/>
@@ -82108,10 +82160,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02914m" sboTerm="SBO:0000247" id="MAM02914m" name="sn-glycerol-3-phosphate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C3H7O6P">
+      <species metaid="M_MAM02914m" sboTerm="SBO:0000247" id="M_MAM02914m" name="sn-glycerol-3-phosphate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C3H7O6P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02914m">
+            <rdf:Description rdf:about="#M_MAM02914m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/glyc3p"/>
@@ -82126,10 +82178,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02914x" sboTerm="SBO:0000247" id="MAM02914x" name="sn-glycerol-3-phosphate" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C3H7O6P">
+      <species metaid="M_MAM02914x" sboTerm="SBO:0000247" id="M_MAM02914x" name="sn-glycerol-3-phosphate" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C3H7O6P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02914x">
+            <rdf:Description rdf:about="#M_MAM02914x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/glyc3p"/>
@@ -82144,10 +82196,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02915c" sboTerm="SBO:0000247" id="MAM02915c" name="somatostatin fragment 3-14" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="C72H100N16O17S2">
+      <species metaid="M_MAM02915c" sboTerm="SBO:0000247" id="M_MAM02915c" name="somatostatin fragment 3-14" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="C72H100N16O17S2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02915c">
+            <rdf:Description rdf:about="#M_MAM02915c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM82431"/>
@@ -82159,10 +82211,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02916c" sboTerm="SBO:0000247" id="MAM02916c" name="somatostatin" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="C77H108N18O19S2">
+      <species metaid="M_MAM02916c" sboTerm="SBO:0000247" id="M_MAM02916c" name="somatostatin" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="C77H108N18O19S2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02916c">
+            <rdf:Description rdf:about="#M_MAM02916c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM82428"/>
@@ -82174,10 +82226,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02917c" sboTerm="SBO:0000247" id="MAM02917c" name="sorbitol-3-phosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H13O9P">
+      <species metaid="M_MAM02917c" sboTerm="SBO:0000247" id="M_MAM02917c" name="sorbitol-3-phosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H13O9P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02917c">
+            <rdf:Description rdf:about="#M_MAM02917c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM48480"/>
@@ -82189,10 +82241,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02918c" sboTerm="SBO:0000247" id="MAM02918c" name="S-palmitoylprotein" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H36N2O3SR2">
+      <species metaid="M_MAM02918c" sboTerm="SBO:0000247" id="M_MAM02918c" name="S-palmitoylprotein" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H36N2O3SR2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02918c">
+            <rdf:Description rdf:about="#M_MAM02918c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C17202"/>
@@ -82204,10 +82256,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02919c" sboTerm="SBO:0000247" id="MAM02919c" name="spermic acid 1" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="C10H25N3O2">
+      <species metaid="M_MAM02919c" sboTerm="SBO:0000247" id="M_MAM02919c" name="spermic acid 1" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="C10H25N3O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02919c">
+            <rdf:Description rdf:about="#M_MAM02919c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM161256"/>
@@ -82219,10 +82271,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02920e" sboTerm="SBO:0000247" id="MAM02920e" name="spermidine dialdehyde" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C7H14NO2">
+      <species metaid="M_MAM02920e" sboTerm="SBO:0000247" id="M_MAM02920e" name="spermidine dialdehyde" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C7H14NO2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02920e">
+            <rdf:Description rdf:about="#M_MAM02920e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM162776"/>
@@ -82233,10 +82285,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02921c" sboTerm="SBO:0000247" id="MAM02921c" name="spermidine monoaldehyde 1" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="C7H18N2O">
+      <species metaid="M_MAM02921c" sboTerm="SBO:0000247" id="M_MAM02921c" name="spermidine monoaldehyde 1" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="C7H18N2O">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02921c">
+            <rdf:Description rdf:about="#M_MAM02921c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM162714"/>
@@ -82248,10 +82300,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02921e" sboTerm="SBO:0000247" id="MAM02921e" name="spermidine monoaldehyde 1" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="C7H18N2O">
+      <species metaid="M_MAM02921e" sboTerm="SBO:0000247" id="M_MAM02921e" name="spermidine monoaldehyde 1" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="C7H18N2O">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02921e">
+            <rdf:Description rdf:about="#M_MAM02921e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM162714"/>
@@ -82263,10 +82315,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02922c" sboTerm="SBO:0000247" id="MAM02922c" name="spermidine monoaldehyde 2" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="C7H18N2O">
+      <species metaid="M_MAM02922c" sboTerm="SBO:0000247" id="M_MAM02922c" name="spermidine monoaldehyde 2" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="C7H18N2O">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02922c">
+            <rdf:Description rdf:about="#M_MAM02922c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM162715"/>
@@ -82278,10 +82330,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02922e" sboTerm="SBO:0000247" id="MAM02922e" name="spermidine monoaldehyde 2" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="C7H18N2O">
+      <species metaid="M_MAM02922e" sboTerm="SBO:0000247" id="M_MAM02922e" name="spermidine monoaldehyde 2" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="C7H18N2O">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02922e">
+            <rdf:Description rdf:about="#M_MAM02922e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM162715"/>
@@ -82293,10 +82345,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02923c" sboTerm="SBO:0000247" id="MAM02923c" name="spermidine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="3" fbc:chemicalFormula="C7H22N3">
+      <species metaid="M_MAM02923c" sboTerm="SBO:0000247" id="M_MAM02923c" name="spermidine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="3" fbc:chemicalFormula="C7H22N3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02923c">
+            <rdf:Description rdf:about="#M_MAM02923c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/spmd"/>
@@ -82312,10 +82364,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02923x" sboTerm="SBO:0000247" id="MAM02923x" name="spermidine" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="3" fbc:chemicalFormula="C7H22N3">
+      <species metaid="M_MAM02923x" sboTerm="SBO:0000247" id="M_MAM02923x" name="spermidine" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="3" fbc:chemicalFormula="C7H22N3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02923x">
+            <rdf:Description rdf:about="#M_MAM02923x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/spmd"/>
@@ -82331,10 +82383,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02923e" sboTerm="SBO:0000247" id="MAM02923e" name="spermidine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="3" fbc:chemicalFormula="C7H22N3">
+      <species metaid="M_MAM02923e" sboTerm="SBO:0000247" id="M_MAM02923e" name="spermidine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="3" fbc:chemicalFormula="C7H22N3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02923e">
+            <rdf:Description rdf:about="#M_MAM02923e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/spmd"/>
@@ -82350,10 +82402,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02924e" sboTerm="SBO:0000247" id="MAM02924e" name="spermine dialdehyde" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="C10H22N2O2">
+      <species metaid="M_MAM02924e" sboTerm="SBO:0000247" id="M_MAM02924e" name="spermine dialdehyde" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="C10H22N2O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02924e">
+            <rdf:Description rdf:about="#M_MAM02924e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM82536"/>
@@ -82365,10 +82417,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02925c" sboTerm="SBO:0000247" id="MAM02925c" name="spermine monoaldehyde" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="3" fbc:chemicalFormula="C10H26N3O">
+      <species metaid="M_MAM02925c" sboTerm="SBO:0000247" id="M_MAM02925c" name="spermine monoaldehyde" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="3" fbc:chemicalFormula="C10H26N3O">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02925c">
+            <rdf:Description rdf:about="#M_MAM02925c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:180903"/>
@@ -82380,10 +82432,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02925e" sboTerm="SBO:0000247" id="MAM02925e" name="spermine monoaldehyde" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="3" fbc:chemicalFormula="C10H26N3O">
+      <species metaid="M_MAM02925e" sboTerm="SBO:0000247" id="M_MAM02925e" name="spermine monoaldehyde" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="3" fbc:chemicalFormula="C10H26N3O">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02925e">
+            <rdf:Description rdf:about="#M_MAM02925e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:180903"/>
@@ -82395,10 +82447,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02926c" sboTerm="SBO:0000247" id="MAM02926c" name="spermine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="4" fbc:chemicalFormula="C10H30N4">
+      <species metaid="M_MAM02926c" sboTerm="SBO:0000247" id="M_MAM02926c" name="spermine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="4" fbc:chemicalFormula="C10H30N4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02926c">
+            <rdf:Description rdf:about="#M_MAM02926c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/sprm"/>
@@ -82414,10 +82466,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02926x" sboTerm="SBO:0000247" id="MAM02926x" name="spermine" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="4" fbc:chemicalFormula="C10H30N4">
+      <species metaid="M_MAM02926x" sboTerm="SBO:0000247" id="M_MAM02926x" name="spermine" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="4" fbc:chemicalFormula="C10H30N4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02926x">
+            <rdf:Description rdf:about="#M_MAM02926x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/sprm"/>
@@ -82433,10 +82485,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02926e" sboTerm="SBO:0000247" id="MAM02926e" name="spermine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="4" fbc:chemicalFormula="C10H30N4">
+      <species metaid="M_MAM02926e" sboTerm="SBO:0000247" id="M_MAM02926e" name="spermine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="4" fbc:chemicalFormula="C10H30N4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02926e">
+            <rdf:Description rdf:about="#M_MAM02926e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/sprm"/>
@@ -82452,10 +82504,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02927c" sboTerm="SBO:0000247" id="MAM02927c" name="sphinganine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C18H40NO2">
+      <species metaid="M_MAM02927c" sboTerm="SBO:0000247" id="M_MAM02927c" name="sphinganine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C18H40NO2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02927c">
+            <rdf:Description rdf:about="#M_MAM02927c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/sphgn"/>
@@ -82472,10 +82524,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02927r" sboTerm="SBO:0000247" id="MAM02927r" name="sphinganine" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C18H40NO2">
+      <species metaid="M_MAM02927r" sboTerm="SBO:0000247" id="M_MAM02927r" name="sphinganine" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C18H40NO2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02927r">
+            <rdf:Description rdf:about="#M_MAM02927r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/sphgn"/>
@@ -82492,10 +82544,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02928c" sboTerm="SBO:0000247" id="MAM02928c" name="sphinganine-1-phosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H39NO5P">
+      <species metaid="M_MAM02928c" sboTerm="SBO:0000247" id="M_MAM02928c" name="sphinganine-1-phosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H39NO5P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02928c">
+            <rdf:Description rdf:about="#M_MAM02928c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/sph1p"/>
@@ -82510,10 +82562,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02928r" sboTerm="SBO:0000247" id="MAM02928r" name="sphinganine-1-phosphate" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H39NO5P">
+      <species metaid="M_MAM02928r" sboTerm="SBO:0000247" id="M_MAM02928r" name="sphinganine-1-phosphate" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H39NO5P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02928r">
+            <rdf:Description rdf:about="#M_MAM02928r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/sph1p"/>
@@ -82528,10 +82580,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02928e" sboTerm="SBO:0000247" id="MAM02928e" name="sphinganine-1-phosphate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H39NO5P">
+      <species metaid="M_MAM02928e" sboTerm="SBO:0000247" id="M_MAM02928e" name="sphinganine-1-phosphate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H39NO5P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02928e">
+            <rdf:Description rdf:about="#M_MAM02928e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/sph1p"/>
@@ -82546,10 +82598,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02929c" sboTerm="SBO:0000247" id="MAM02929c" name="sphingosine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C18H38NO2">
+      <species metaid="M_MAM02929c" sboTerm="SBO:0000247" id="M_MAM02929c" name="sphingosine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C18H38NO2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02929c">
+            <rdf:Description rdf:about="#M_MAM02929c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/sphings"/>
@@ -82566,10 +82618,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02929g" sboTerm="SBO:0000247" id="MAM02929g" name="sphingosine" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C18H38NO2">
+      <species metaid="M_MAM02929g" sboTerm="SBO:0000247" id="M_MAM02929g" name="sphingosine" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C18H38NO2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02929g">
+            <rdf:Description rdf:about="#M_MAM02929g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/sphings"/>
@@ -82586,10 +82638,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02929l" sboTerm="SBO:0000247" id="MAM02929l" name="sphingosine" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C18H38NO2">
+      <species metaid="M_MAM02929l" sboTerm="SBO:0000247" id="M_MAM02929l" name="sphingosine" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C18H38NO2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02929l">
+            <rdf:Description rdf:about="#M_MAM02929l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/sphings"/>
@@ -82606,10 +82658,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02929r" sboTerm="SBO:0000247" id="MAM02929r" name="sphingosine" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C18H38NO2">
+      <species metaid="M_MAM02929r" sboTerm="SBO:0000247" id="M_MAM02929r" name="sphingosine" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C18H38NO2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02929r">
+            <rdf:Description rdf:about="#M_MAM02929r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/sphings"/>
@@ -82626,10 +82678,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02929e" sboTerm="SBO:0000247" id="MAM02929e" name="sphingosine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C18H38NO2">
+      <species metaid="M_MAM02929e" sboTerm="SBO:0000247" id="M_MAM02929e" name="sphingosine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C18H38NO2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02929e">
+            <rdf:Description rdf:about="#M_MAM02929e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/sphings"/>
@@ -82646,10 +82698,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02930c" sboTerm="SBO:0000247" id="MAM02930c" name="sphingosine-1-phosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H37NO5P">
+      <species metaid="M_MAM02930c" sboTerm="SBO:0000247" id="M_MAM02930c" name="sphingosine-1-phosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H37NO5P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02930c">
+            <rdf:Description rdf:about="#M_MAM02930c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/sphs1p"/>
@@ -82666,10 +82718,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02930r" sboTerm="SBO:0000247" id="MAM02930r" name="sphingosine-1-phosphate" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H37NO5P">
+      <species metaid="M_MAM02930r" sboTerm="SBO:0000247" id="M_MAM02930r" name="sphingosine-1-phosphate" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H37NO5P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02930r">
+            <rdf:Description rdf:about="#M_MAM02930r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/sphs1p"/>
@@ -82686,10 +82738,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02930e" sboTerm="SBO:0000247" id="MAM02930e" name="sphingosine-1-phosphate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H37NO5P">
+      <species metaid="M_MAM02930e" sboTerm="SBO:0000247" id="M_MAM02930e" name="sphingosine-1-phosphate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H37NO5P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02930e">
+            <rdf:Description rdf:about="#M_MAM02930e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/sphs1p"/>
@@ -82706,10 +82758,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02931c" sboTerm="SBO:0000247" id="MAM02931c" name="sphingosylphosphorylcholine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C23H50N2O5P">
+      <species metaid="M_MAM02931c" sboTerm="SBO:0000247" id="M_MAM02931c" name="sphingosylphosphorylcholine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C23H50N2O5P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02931c">
+            <rdf:Description rdf:about="#M_MAM02931c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/spc_hs"/>
@@ -82722,10 +82774,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02931e" sboTerm="SBO:0000247" id="MAM02931e" name="sphingosylphosphorylcholine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C23H50N2O5P">
+      <species metaid="M_MAM02931e" sboTerm="SBO:0000247" id="M_MAM02931e" name="sphingosylphosphorylcholine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C23H50N2O5P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02931e">
+            <rdf:Description rdf:about="#M_MAM02931e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/spc_hs"/>
@@ -82738,10 +82790,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02933c" sboTerm="SBO:0000247" id="MAM02933c" name="squalene" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C30H50">
+      <species metaid="M_MAM02933c" sboTerm="SBO:0000247" id="M_MAM02933c" name="squalene" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C30H50">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02933c">
+            <rdf:Description rdf:about="#M_MAM02933c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/sql"/>
@@ -82758,10 +82810,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02934m" sboTerm="SBO:0000247" id="MAM02934m" name="S-succinyldihydrolipoamide" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C12H20NO4S2">
+      <species metaid="M_MAM02934m" sboTerm="SBO:0000247" id="M_MAM02934m" name="S-succinyldihydrolipoamide" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C12H20NO4S2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02934m">
+            <rdf:Description rdf:about="#M_MAM02934m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:17432"/>
@@ -82775,10 +82827,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02935c" sboTerm="SBO:0000247" id="MAM02935c" name="STAR" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C1393H2267N409O414S17">
+      <species metaid="M_MAM02935c" sboTerm="SBO:0000247" id="M_MAM02935c" name="STAR" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C1393H2267N409O414S17">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02935c">
+            <rdf:Description rdf:about="#M_MAM02935c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/PROTEIN"/>
@@ -82789,10 +82841,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02935l" sboTerm="SBO:0000247" id="MAM02935l" name="STAR" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C1393H2267N409O414S17">
+      <species metaid="M_MAM02935l" sboTerm="SBO:0000247" id="M_MAM02935l" name="STAR" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C1393H2267N409O414S17">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02935l">
+            <rdf:Description rdf:about="#M_MAM02935l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/PROTEIN"/>
@@ -82803,10 +82855,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02935m" sboTerm="SBO:0000247" id="MAM02935m" name="STAR" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C1393H2267N409O414S17">
+      <species metaid="M_MAM02935m" sboTerm="SBO:0000247" id="M_MAM02935m" name="STAR" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C1393H2267N409O414S17">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02935m">
+            <rdf:Description rdf:about="#M_MAM02935m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/PROTEIN"/>
@@ -82817,10 +82869,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02936e" sboTerm="SBO:0000247" id="MAM02936e" name="starch structure 1" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C66H112O56">
+      <species metaid="M_MAM02936e" sboTerm="SBO:0000247" id="M_MAM02936e" name="starch structure 1" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C66H112O56">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02936e">
+            <rdf:Description rdf:about="#M_MAM02936e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/strch1"/>
@@ -82832,10 +82884,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02937e" sboTerm="SBO:0000247" id="MAM02937e" name="starch structure 2" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H32O16">
+      <species metaid="M_MAM02937e" sboTerm="SBO:0000247" id="M_MAM02937e" name="starch structure 2" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H32O16">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02937e">
+            <rdf:Description rdf:about="#M_MAM02937e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/strch2"/>
@@ -82847,10 +82899,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02938c" sboTerm="SBO:0000247" id="MAM02938c" name="stearate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H35O2">
+      <species metaid="M_MAM02938c" sboTerm="SBO:0000247" id="M_MAM02938c" name="stearate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H35O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02938c">
+            <rdf:Description rdf:about="#M_MAM02938c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ocdca"/>
@@ -82867,10 +82919,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02938l" sboTerm="SBO:0000247" id="MAM02938l" name="stearate" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H35O2">
+      <species metaid="M_MAM02938l" sboTerm="SBO:0000247" id="M_MAM02938l" name="stearate" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H35O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02938l">
+            <rdf:Description rdf:about="#M_MAM02938l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ocdca"/>
@@ -82887,10 +82939,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02938r" sboTerm="SBO:0000247" id="MAM02938r" name="stearate" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H35O2">
+      <species metaid="M_MAM02938r" sboTerm="SBO:0000247" id="M_MAM02938r" name="stearate" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H35O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02938r">
+            <rdf:Description rdf:about="#M_MAM02938r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ocdca"/>
@@ -82907,10 +82959,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02938e" sboTerm="SBO:0000247" id="MAM02938e" name="stearate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H35O2">
+      <species metaid="M_MAM02938e" sboTerm="SBO:0000247" id="M_MAM02938e" name="stearate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H35O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02938e">
+            <rdf:Description rdf:about="#M_MAM02938e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ocdca"/>
@@ -82927,10 +82979,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02939c" sboTerm="SBO:0000247" id="MAM02939c" name="stearidonic acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H27O2">
+      <species metaid="M_MAM02939c" sboTerm="SBO:0000247" id="M_MAM02939c" name="stearidonic acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H27O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02939c">
+            <rdf:Description rdf:about="#M_MAM02939c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/strdnc"/>
@@ -82947,10 +82999,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02939l" sboTerm="SBO:0000247" id="MAM02939l" name="stearidonic acid" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H27O2">
+      <species metaid="M_MAM02939l" sboTerm="SBO:0000247" id="M_MAM02939l" name="stearidonic acid" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H27O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02939l">
+            <rdf:Description rdf:about="#M_MAM02939l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/strdnc"/>
@@ -82967,10 +83019,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02939r" sboTerm="SBO:0000247" id="MAM02939r" name="stearidonic acid" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H27O2">
+      <species metaid="M_MAM02939r" sboTerm="SBO:0000247" id="M_MAM02939r" name="stearidonic acid" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H27O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02939r">
+            <rdf:Description rdf:about="#M_MAM02939r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/strdnc"/>
@@ -82987,10 +83039,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02939e" sboTerm="SBO:0000247" id="MAM02939e" name="stearidonic acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H27O2">
+      <species metaid="M_MAM02939e" sboTerm="SBO:0000247" id="M_MAM02939e" name="stearidonic acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H27O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02939e">
+            <rdf:Description rdf:about="#M_MAM02939e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/strdnc"/>
@@ -83007,10 +83059,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02940c" sboTerm="SBO:0000247" id="MAM02940c" name="stearoylcarnitine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H49NO4">
+      <species metaid="M_MAM02940c" sboTerm="SBO:0000247" id="M_MAM02940c" name="stearoylcarnitine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H49NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02940c">
+            <rdf:Description rdf:about="#M_MAM02940c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/stcrn"/>
@@ -83026,10 +83078,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02940m" sboTerm="SBO:0000247" id="MAM02940m" name="stearoylcarnitine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H49NO4">
+      <species metaid="M_MAM02940m" sboTerm="SBO:0000247" id="M_MAM02940m" name="stearoylcarnitine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H49NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02940m">
+            <rdf:Description rdf:about="#M_MAM02940m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/stcrn"/>
@@ -83045,10 +83097,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02940r" sboTerm="SBO:0000247" id="MAM02940r" name="stearoylcarnitine" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H49NO4">
+      <species metaid="M_MAM02940r" sboTerm="SBO:0000247" id="M_MAM02940r" name="stearoylcarnitine" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H49NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02940r">
+            <rdf:Description rdf:about="#M_MAM02940r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/stcrn"/>
@@ -83064,10 +83116,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02941c" sboTerm="SBO:0000247" id="MAM02941c" name="stearoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C39H66N7O17P3S">
+      <species metaid="M_MAM02941c" sboTerm="SBO:0000247" id="M_MAM02941c" name="stearoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C39H66N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02941c">
+            <rdf:Description rdf:about="#M_MAM02941c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/stcoa"/>
@@ -83084,10 +83136,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02941m" sboTerm="SBO:0000247" id="MAM02941m" name="stearoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C39H66N7O17P3S">
+      <species metaid="M_MAM02941m" sboTerm="SBO:0000247" id="M_MAM02941m" name="stearoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C39H66N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02941m">
+            <rdf:Description rdf:about="#M_MAM02941m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/stcoa"/>
@@ -83104,10 +83156,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02941x" sboTerm="SBO:0000247" id="MAM02941x" name="stearoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C39H66N7O17P3S">
+      <species metaid="M_MAM02941x" sboTerm="SBO:0000247" id="M_MAM02941x" name="stearoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C39H66N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02941x">
+            <rdf:Description rdf:about="#M_MAM02941x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/stcoa"/>
@@ -83124,10 +83176,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02941r" sboTerm="SBO:0000247" id="MAM02941r" name="stearoyl-CoA" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C39H66N7O17P3S">
+      <species metaid="M_MAM02941r" sboTerm="SBO:0000247" id="M_MAM02941r" name="stearoyl-CoA" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C39H66N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02941r">
+            <rdf:Description rdf:about="#M_MAM02941r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/stcoa"/>
@@ -83144,10 +83196,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02942m" sboTerm="SBO:0000247" id="MAM02942m" name="succinate semialdehyde" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C4H5O3">
+      <species metaid="M_MAM02942m" sboTerm="SBO:0000247" id="M_MAM02942m" name="succinate semialdehyde" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C4H5O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02942m">
+            <rdf:Description rdf:about="#M_MAM02942m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/sucsal"/>
@@ -83163,10 +83215,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02943c" sboTerm="SBO:0000247" id="MAM02943c" name="succinate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C4H4O4">
+      <species metaid="M_MAM02943c" sboTerm="SBO:0000247" id="M_MAM02943c" name="succinate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C4H4O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02943c">
+            <rdf:Description rdf:about="#M_MAM02943c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/succ"/>
@@ -83183,10 +83235,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02943m" sboTerm="SBO:0000247" id="MAM02943m" name="succinate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C4H4O4">
+      <species metaid="M_MAM02943m" sboTerm="SBO:0000247" id="M_MAM02943m" name="succinate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C4H4O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02943m">
+            <rdf:Description rdf:about="#M_MAM02943m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/succ"/>
@@ -83203,10 +83255,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02943x" sboTerm="SBO:0000247" id="MAM02943x" name="succinate" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C4H4O4">
+      <species metaid="M_MAM02943x" sboTerm="SBO:0000247" id="M_MAM02943x" name="succinate" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C4H4O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02943x">
+            <rdf:Description rdf:about="#M_MAM02943x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/succ"/>
@@ -83223,10 +83275,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02943e" sboTerm="SBO:0000247" id="MAM02943e" name="succinate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C4H4O4">
+      <species metaid="M_MAM02943e" sboTerm="SBO:0000247" id="M_MAM02943e" name="succinate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C4H4O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02943e">
+            <rdf:Description rdf:about="#M_MAM02943e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/succ"/>
@@ -83243,10 +83295,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02944c" sboTerm="SBO:0000247" id="MAM02944c" name="succinyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C25H35N7O19P3S">
+      <species metaid="M_MAM02944c" sboTerm="SBO:0000247" id="M_MAM02944c" name="succinyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C25H35N7O19P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02944c">
+            <rdf:Description rdf:about="#M_MAM02944c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/succoa"/>
@@ -83261,10 +83313,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02944m" sboTerm="SBO:0000247" id="MAM02944m" name="succinyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C25H35N7O19P3S">
+      <species metaid="M_MAM02944m" sboTerm="SBO:0000247" id="M_MAM02944m" name="succinyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C25H35N7O19P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02944m">
+            <rdf:Description rdf:about="#M_MAM02944m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/succoa"/>
@@ -83279,10 +83331,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02945e" sboTerm="SBO:0000247" id="MAM02945e" name="sucrose" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C12H22O11">
+      <species metaid="M_MAM02945e" sboTerm="SBO:0000247" id="M_MAM02945e" name="sucrose" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C12H22O11">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02945e">
+            <rdf:Description rdf:about="#M_MAM02945e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/sucr"/>
@@ -83298,10 +83350,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02946c" sboTerm="SBO:0000247" id="MAM02946c" name="sulfate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="O4S">
+      <species metaid="M_MAM02946c" sboTerm="SBO:0000247" id="M_MAM02946c" name="sulfate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="O4S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02946c">
+            <rdf:Description rdf:about="#M_MAM02946c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/so4"/>
@@ -83317,10 +83369,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02946l" sboTerm="SBO:0000247" id="MAM02946l" name="sulfate" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="O4S">
+      <species metaid="M_MAM02946l" sboTerm="SBO:0000247" id="M_MAM02946l" name="sulfate" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="O4S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02946l">
+            <rdf:Description rdf:about="#M_MAM02946l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/so4"/>
@@ -83336,10 +83388,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02946m" sboTerm="SBO:0000247" id="MAM02946m" name="sulfate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="O4S">
+      <species metaid="M_MAM02946m" sboTerm="SBO:0000247" id="M_MAM02946m" name="sulfate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="O4S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02946m">
+            <rdf:Description rdf:about="#M_MAM02946m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/so4"/>
@@ -83355,10 +83407,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02946r" sboTerm="SBO:0000247" id="MAM02946r" name="sulfate" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="O4S">
+      <species metaid="M_MAM02946r" sboTerm="SBO:0000247" id="M_MAM02946r" name="sulfate" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="O4S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02946r">
+            <rdf:Description rdf:about="#M_MAM02946r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/so4"/>
@@ -83374,10 +83426,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02946e" sboTerm="SBO:0000247" id="MAM02946e" name="sulfate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="O4S">
+      <species metaid="M_MAM02946e" sboTerm="SBO:0000247" id="M_MAM02946e" name="sulfate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="O4S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02946e">
+            <rdf:Description rdf:about="#M_MAM02946e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/so4"/>
@@ -83393,10 +83445,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02947c" sboTerm="SBO:0000247" id="MAM02947c" name="sulfatide galactocerebroside" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H45NO10SRCO">
+      <species metaid="M_MAM02947c" sboTerm="SBO:0000247" id="M_MAM02947c" name="sulfatide galactocerebroside" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H45NO10SRCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02947c">
+            <rdf:Description rdf:about="#M_MAM02947c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/sgalside_hs"/>
@@ -83408,10 +83460,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02947g" sboTerm="SBO:0000247" id="MAM02947g" name="sulfatide galactocerebroside" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H45NO10SRCO">
+      <species metaid="M_MAM02947g" sboTerm="SBO:0000247" id="M_MAM02947g" name="sulfatide galactocerebroside" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H45NO10SRCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02947g">
+            <rdf:Description rdf:about="#M_MAM02947g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/sgalside_hs"/>
@@ -83423,10 +83475,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02947l" sboTerm="SBO:0000247" id="MAM02947l" name="sulfatide galactocerebroside" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H45NO10SRCO">
+      <species metaid="M_MAM02947l" sboTerm="SBO:0000247" id="M_MAM02947l" name="sulfatide galactocerebroside" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H45NO10SRCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02947l">
+            <rdf:Description rdf:about="#M_MAM02947l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/sgalside_hs"/>
@@ -83438,10 +83490,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02949c" sboTerm="SBO:0000247" id="MAM02949c" name="sulfite" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="O3S">
+      <species metaid="M_MAM02949c" sboTerm="SBO:0000247" id="M_MAM02949c" name="sulfite" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="O3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02949c">
+            <rdf:Description rdf:about="#M_MAM02949c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/so3"/>
@@ -83456,10 +83508,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02949m" sboTerm="SBO:0000247" id="MAM02949m" name="sulfite" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="O3S">
+      <species metaid="M_MAM02949m" sboTerm="SBO:0000247" id="M_MAM02949m" name="sulfite" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="O3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02949m">
+            <rdf:Description rdf:about="#M_MAM02949m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/so3"/>
@@ -83474,10 +83526,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02949e" sboTerm="SBO:0000247" id="MAM02949e" name="sulfite" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="O3S">
+      <species metaid="M_MAM02949e" sboTerm="SBO:0000247" id="M_MAM02949e" name="sulfite" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="O3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02949e">
+            <rdf:Description rdf:about="#M_MAM02949e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/so3"/>
@@ -83492,10 +83544,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02950c" sboTerm="SBO:0000247" id="MAM02950c" name="sulfochenodeoxycholate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C24H38O7S">
+      <species metaid="M_MAM02950c" sboTerm="SBO:0000247" id="M_MAM02950c" name="sulfochenodeoxycholate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C24H38O7S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02950c">
+            <rdf:Description rdf:about="#M_MAM02950c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM163000"/>
@@ -83506,10 +83558,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02950e" sboTerm="SBO:0000247" id="MAM02950e" name="sulfochenodeoxycholate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C24H38O7S">
+      <species metaid="M_MAM02950e" sboTerm="SBO:0000247" id="M_MAM02950e" name="sulfochenodeoxycholate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C24H38O7S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02950e">
+            <rdf:Description rdf:about="#M_MAM02950e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM163000"/>
@@ -83520,10 +83572,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02951c" sboTerm="SBO:0000247" id="MAM02951c" name="sulfoglycolithocholate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C26H41NO7S">
+      <species metaid="M_MAM02951c" sboTerm="SBO:0000247" id="M_MAM02951c" name="sulfoglycolithocholate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C26H41NO7S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02951c">
+            <rdf:Description rdf:about="#M_MAM02951c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:60007"/>
@@ -83537,10 +83589,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02951e" sboTerm="SBO:0000247" id="MAM02951e" name="sulfoglycolithocholate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C26H41NO7S">
+      <species metaid="M_MAM02951e" sboTerm="SBO:0000247" id="M_MAM02951e" name="sulfoglycolithocholate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C26H41NO7S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02951e">
+            <rdf:Description rdf:about="#M_MAM02951e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:60007"/>
@@ -83554,10 +83606,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02952c" sboTerm="SBO:0000247" id="MAM02952c" name="sulfotaurolithocholate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C26H43NO8S2">
+      <species metaid="M_MAM02952c" sboTerm="SBO:0000247" id="M_MAM02952c" name="sulfotaurolithocholate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C26H43NO8S2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02952c">
+            <rdf:Description rdf:about="#M_MAM02952c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:17864"/>
@@ -83573,10 +83625,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02952e" sboTerm="SBO:0000247" id="MAM02952e" name="sulfotaurolithocholate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C26H43NO8S2">
+      <species metaid="M_MAM02952e" sboTerm="SBO:0000247" id="M_MAM02952e" name="sulfotaurolithocholate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C26H43NO8S2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02952e">
+            <rdf:Description rdf:about="#M_MAM02952e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:17864"/>
@@ -83592,10 +83644,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02953c" sboTerm="SBO:0000247" id="MAM02953c" name="tachysterol 3" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H44O">
+      <species metaid="M_MAM02953c" sboTerm="SBO:0000247" id="M_MAM02953c" name="tachysterol 3" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H44O">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02953c">
+            <rdf:Description rdf:about="#M_MAM02953c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ts3"/>
@@ -83609,10 +83661,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02954c" sboTerm="SBO:0000247" id="MAM02954c" name="TAG epoxide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C2HCl3O">
+      <species metaid="M_MAM02954c" sboTerm="SBO:0000247" id="M_MAM02954c" name="TAG epoxide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C2HCl3O">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02954c">
+            <rdf:Description rdf:about="#M_MAM02954c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:28888"/>
@@ -83625,10 +83677,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02955c" sboTerm="SBO:0000247" id="MAM02955c" name="tagatose-1,6-bisphosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C6H10O12P2">
+      <species metaid="M_MAM02955c" sboTerm="SBO:0000247" id="M_MAM02955c" name="tagatose-1,6-bisphosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C6H10O12P2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02955c">
+            <rdf:Description rdf:about="#M_MAM02955c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:4250"/>
@@ -83643,10 +83695,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02956e" sboTerm="SBO:0000247" id="MAM02956e" name="TAG-chylomicron pool" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H5O6R3">
+      <species metaid="M_MAM02956e" sboTerm="SBO:0000247" id="M_MAM02956e" name="TAG-chylomicron pool" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H5O6R3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02956e">
+            <rdf:Description rdf:about="#M_MAM02956e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:17855"/>
@@ -83660,10 +83712,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02957e" sboTerm="SBO:0000247" id="MAM02957e" name="TAG-extraction" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H5O6R3">
+      <species metaid="M_MAM02957e" sboTerm="SBO:0000247" id="M_MAM02957e" name="TAG-extraction" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H5O6R3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02957e">
+            <rdf:Description rdf:about="#M_MAM02957e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:17855"/>
@@ -83677,10 +83729,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02958c" sboTerm="SBO:0000247" id="MAM02958c" name="TAG-LD pool" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H5O6R3">
+      <species metaid="M_MAM02958c" sboTerm="SBO:0000247" id="M_MAM02958c" name="TAG-LD pool" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H5O6R3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02958c">
+            <rdf:Description rdf:about="#M_MAM02958c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:17855"/>
@@ -83694,10 +83746,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02958l" sboTerm="SBO:0000247" id="MAM02958l" name="TAG-LD pool" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H5O6R3">
+      <species metaid="M_MAM02958l" sboTerm="SBO:0000247" id="M_MAM02958l" name="TAG-LD pool" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H5O6R3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02958l">
+            <rdf:Description rdf:about="#M_MAM02958l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:17855"/>
@@ -83711,10 +83763,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02958r" sboTerm="SBO:0000247" id="MAM02958r" name="TAG-LD pool" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H5O6R3">
+      <species metaid="M_MAM02958r" sboTerm="SBO:0000247" id="M_MAM02958r" name="TAG-LD pool" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H5O6R3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02958r">
+            <rdf:Description rdf:about="#M_MAM02958r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:17855"/>
@@ -83728,10 +83780,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02959e" sboTerm="SBO:0000247" id="MAM02959e" name="TAG-VLDL pool" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H5O6R3">
+      <species metaid="M_MAM02959e" sboTerm="SBO:0000247" id="M_MAM02959e" name="TAG-VLDL pool" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H5O6R3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02959e">
+            <rdf:Description rdf:about="#M_MAM02959e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/tag_hs"/>
@@ -83746,10 +83798,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02960g" sboTerm="SBO:0000247" id="MAM02960g" name="T-antigen" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C14H24NO10X">
+      <species metaid="M_MAM02960g" sboTerm="SBO:0000247" id="M_MAM02960g" name="T-antigen" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C14H24NO10X">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02960g">
+            <rdf:Description rdf:about="#M_MAM02960g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/T_antigen"/>
@@ -83763,10 +83815,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02961c" sboTerm="SBO:0000247" id="MAM02961c" name="taurine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C2H7NO3S">
+      <species metaid="M_MAM02961c" sboTerm="SBO:0000247" id="M_MAM02961c" name="taurine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C2H7NO3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02961c">
+            <rdf:Description rdf:about="#M_MAM02961c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/taur"/>
@@ -83782,10 +83834,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02961e" sboTerm="SBO:0000247" id="MAM02961e" name="taurine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C2H7NO3S">
+      <species metaid="M_MAM02961e" sboTerm="SBO:0000247" id="M_MAM02961e" name="taurine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C2H7NO3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02961e">
+            <rdf:Description rdf:about="#M_MAM02961e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/taur"/>
@@ -83801,10 +83853,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02962c" sboTerm="SBO:0000247" id="MAM02962c" name="taurochenodeoxycholate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C26H45NO6S">
+      <species metaid="M_MAM02962c" sboTerm="SBO:0000247" id="M_MAM02962c" name="taurochenodeoxycholate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C26H45NO6S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02962c">
+            <rdf:Description rdf:about="#M_MAM02962c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/tdchola"/>
@@ -83821,10 +83873,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02962x" sboTerm="SBO:0000247" id="MAM02962x" name="taurochenodeoxycholate" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C26H45NO6S">
+      <species metaid="M_MAM02962x" sboTerm="SBO:0000247" id="M_MAM02962x" name="taurochenodeoxycholate" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C26H45NO6S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02962x">
+            <rdf:Description rdf:about="#M_MAM02962x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/tdchola"/>
@@ -83841,10 +83893,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02962e" sboTerm="SBO:0000247" id="MAM02962e" name="taurochenodeoxycholate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C26H45NO6S">
+      <species metaid="M_MAM02962e" sboTerm="SBO:0000247" id="M_MAM02962e" name="taurochenodeoxycholate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C26H45NO6S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02962e">
+            <rdf:Description rdf:about="#M_MAM02962e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/tdchola"/>
@@ -83861,10 +83913,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02963c" sboTerm="SBO:0000247" id="MAM02963c" name="taurocholate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C26H45NO7S">
+      <species metaid="M_MAM02963c" sboTerm="SBO:0000247" id="M_MAM02963c" name="taurocholate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C26H45NO7S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02963c">
+            <rdf:Description rdf:about="#M_MAM02963c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/tchola"/>
@@ -83881,10 +83933,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02963x" sboTerm="SBO:0000247" id="MAM02963x" name="taurocholate" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C26H45NO7S">
+      <species metaid="M_MAM02963x" sboTerm="SBO:0000247" id="M_MAM02963x" name="taurocholate" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C26H45NO7S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02963x">
+            <rdf:Description rdf:about="#M_MAM02963x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/tchola"/>
@@ -83901,10 +83953,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02963e" sboTerm="SBO:0000247" id="MAM02963e" name="taurocholate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C26H45NO7S">
+      <species metaid="M_MAM02963e" sboTerm="SBO:0000247" id="M_MAM02963e" name="taurocholate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C26H45NO7S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02963e">
+            <rdf:Description rdf:about="#M_MAM02963e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/tchola"/>
@@ -83921,10 +83973,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02964c" sboTerm="SBO:0000247" id="MAM02964c" name="taurodeoxycholate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C26H44NO6S">
+      <species metaid="M_MAM02964c" sboTerm="SBO:0000247" id="M_MAM02964c" name="taurodeoxycholate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C26H44NO6S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02964c">
+            <rdf:Description rdf:about="#M_MAM02964c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:9410"/>
@@ -83939,10 +83991,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02965c" sboTerm="SBO:0000247" id="MAM02965c" name="taurolithocholate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C26H44NO5S">
+      <species metaid="M_MAM02965c" sboTerm="SBO:0000247" id="M_MAM02965c" name="taurolithocholate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C26H44NO5S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02965c">
+            <rdf:Description rdf:about="#M_MAM02965c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:36259"/>
@@ -83958,10 +84010,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02965x" sboTerm="SBO:0000247" id="MAM02965x" name="taurolithocholate" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C26H44NO5S">
+      <species metaid="M_MAM02965x" sboTerm="SBO:0000247" id="M_MAM02965x" name="taurolithocholate" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C26H44NO5S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02965x">
+            <rdf:Description rdf:about="#M_MAM02965x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:36259"/>
@@ -83977,10 +84029,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02965e" sboTerm="SBO:0000247" id="MAM02965e" name="taurolithocholate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C26H44NO5S">
+      <species metaid="M_MAM02965e" sboTerm="SBO:0000247" id="M_MAM02965e" name="taurolithocholate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C26H44NO5S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02965e">
+            <rdf:Description rdf:about="#M_MAM02965e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:36259"/>
@@ -83996,10 +84048,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02966c" sboTerm="SBO:0000247" id="MAM02966c" name="tauroursodeoxycholate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C26H45NO6S">
+      <species metaid="M_MAM02966c" sboTerm="SBO:0000247" id="M_MAM02966c" name="tauroursodeoxycholate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C26H45NO6S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02966c">
+            <rdf:Description rdf:about="#M_MAM02966c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM162420"/>
@@ -84010,10 +84062,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02966e" sboTerm="SBO:0000247" id="MAM02966e" name="tauroursodeoxycholate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C26H45NO6S">
+      <species metaid="M_MAM02966e" sboTerm="SBO:0000247" id="M_MAM02966e" name="tauroursodeoxycholate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C26H45NO6S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02966e">
+            <rdf:Description rdf:about="#M_MAM02966e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM162420"/>
@@ -84024,10 +84076,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02967c" sboTerm="SBO:0000247" id="MAM02967c" name="testosterone glucuronide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H36O8">
+      <species metaid="M_MAM02967c" sboTerm="SBO:0000247" id="M_MAM02967c" name="testosterone glucuronide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H36O8">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02967c">
+            <rdf:Description rdf:about="#M_MAM02967c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/tststeroneglc"/>
@@ -84043,10 +84095,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02967r" sboTerm="SBO:0000247" id="MAM02967r" name="testosterone glucuronide" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H36O8">
+      <species metaid="M_MAM02967r" sboTerm="SBO:0000247" id="M_MAM02967r" name="testosterone glucuronide" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H36O8">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02967r">
+            <rdf:Description rdf:about="#M_MAM02967r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/tststeroneglc"/>
@@ -84062,10 +84114,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02967e" sboTerm="SBO:0000247" id="MAM02967e" name="testosterone glucuronide" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H36O8">
+      <species metaid="M_MAM02967e" sboTerm="SBO:0000247" id="M_MAM02967e" name="testosterone glucuronide" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H36O8">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02967e">
+            <rdf:Description rdf:about="#M_MAM02967e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/tststeroneglc"/>
@@ -84081,10 +84133,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02968c" sboTerm="SBO:0000247" id="MAM02968c" name="testosterone sulfate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C19H27O5S">
+      <species metaid="M_MAM02968c" sboTerm="SBO:0000247" id="M_MAM02968c" name="testosterone sulfate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C19H27O5S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02968c">
+            <rdf:Description rdf:about="#M_MAM02968c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/tststerones"/>
@@ -84098,10 +84150,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02968e" sboTerm="SBO:0000247" id="MAM02968e" name="testosterone sulfate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C19H27O5S">
+      <species metaid="M_MAM02968e" sboTerm="SBO:0000247" id="M_MAM02968e" name="testosterone sulfate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C19H27O5S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02968e">
+            <rdf:Description rdf:about="#M_MAM02968e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/tststerones"/>
@@ -84115,10 +84167,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02969c" sboTerm="SBO:0000247" id="MAM02969c" name="testosterone" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H28O2">
+      <species metaid="M_MAM02969c" sboTerm="SBO:0000247" id="M_MAM02969c" name="testosterone" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H28O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02969c">
+            <rdf:Description rdf:about="#M_MAM02969c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/tststerone"/>
@@ -84136,10 +84188,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02969r" sboTerm="SBO:0000247" id="MAM02969r" name="testosterone" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H28O2">
+      <species metaid="M_MAM02969r" sboTerm="SBO:0000247" id="M_MAM02969r" name="testosterone" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H28O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02969r">
+            <rdf:Description rdf:about="#M_MAM02969r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/tststerone"/>
@@ -84157,10 +84209,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02969e" sboTerm="SBO:0000247" id="MAM02969e" name="testosterone" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H28O2">
+      <species metaid="M_MAM02969e" sboTerm="SBO:0000247" id="M_MAM02969e" name="testosterone" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H28O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02969e">
+            <rdf:Description rdf:about="#M_MAM02969e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/tststerone"/>
@@ -84178,10 +84230,10 @@
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-      <species metaid="MAM02970c" sboTerm="SBO:0000247" id="MAM02970c" name="tetracosanoylcarnitine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C31H61NO4">
+      <species metaid="M_MAM02970c" sboTerm="SBO:0000247" id="M_MAM02970c" name="tetracosanoylcarnitine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C31H61NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02970c">
+            <rdf:Description rdf:about="#M_MAM02970c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/lgnccrn"/>
@@ -84193,10 +84245,10 @@
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-      <species metaid="MAM02970r" sboTerm="SBO:0000247" id="MAM02970r" name="tetracosanoylcarnitine" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C31H61NO4">
+      <species metaid="M_MAM02970r" sboTerm="SBO:0000247" id="M_MAM02970r" name="tetracosanoylcarnitine" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C31H61NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02970r">
+            <rdf:Description rdf:about="#M_MAM02970r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/lgnccrn"/>
@@ -84208,10 +84260,10 @@
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-      <species metaid="MAM02971c" sboTerm="SBO:0000247" id="MAM02971c" name="tetracosanoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C45H78N7O17P3S">
+      <species metaid="M_MAM02971c" sboTerm="SBO:0000247" id="M_MAM02971c" name="tetracosanoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C45H78N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02971c">
+            <rdf:Description rdf:about="#M_MAM02971c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/lgnccoa"/>
@@ -84229,10 +84281,10 @@
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-      <species metaid="MAM02971x" sboTerm="SBO:0000247" id="MAM02971x" name="tetracosanoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C45H78N7O17P3S">
+      <species metaid="M_MAM02971x" sboTerm="SBO:0000247" id="M_MAM02971x" name="tetracosanoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C45H78N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02971x">
+            <rdf:Description rdf:about="#M_MAM02971x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/lgnccoa"/>
@@ -84250,10 +84302,10 @@
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         </annotation>
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-      <species metaid="MAM02971r" sboTerm="SBO:0000247" id="MAM02971r" name="tetracosanoyl-CoA" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C45H78N7O17P3S">
+      <species metaid="M_MAM02971r" sboTerm="SBO:0000247" id="M_MAM02971r" name="tetracosanoyl-CoA" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C45H78N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02971r">
+            <rdf:Description rdf:about="#M_MAM02971r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/lgnccoa"/>
@@ -84271,10 +84323,10 @@
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         </annotation>
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-      <species metaid="MAM02972c" sboTerm="SBO:0000247" id="MAM02972c" name="tetradecanoyl-[ACP]" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C25H47N2O8PRS">
+      <species metaid="M_MAM02972c" sboTerm="SBO:0000247" id="M_MAM02972c" name="tetradecanoyl-[ACP]" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C25H47N2O8PRS">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02972c">
+            <rdf:Description rdf:about="#M_MAM02972c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/myrsACP"/>
@@ -84287,10 +84339,10 @@
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         </annotation>
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-      <species metaid="MAM02973c" sboTerm="SBO:0000247" id="MAM02973c" name="tetradecanoylcarnitine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H41NO4">
+      <species metaid="M_MAM02973c" sboTerm="SBO:0000247" id="M_MAM02973c" name="tetradecanoylcarnitine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H41NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02973c">
+            <rdf:Description rdf:about="#M_MAM02973c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/hmdb/HMDB05066"/>
@@ -84304,10 +84356,10 @@
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         </annotation>
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-      <species metaid="MAM02973m" sboTerm="SBO:0000247" id="MAM02973m" name="tetradecanoylcarnitine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H41NO4">
+      <species metaid="M_MAM02973m" sboTerm="SBO:0000247" id="M_MAM02973m" name="tetradecanoylcarnitine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H41NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02973m">
+            <rdf:Description rdf:about="#M_MAM02973m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/hmdb/HMDB05066"/>
@@ -84321,10 +84373,10 @@
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         </annotation>
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-      <species metaid="MAM02973r" sboTerm="SBO:0000247" id="MAM02973r" name="tetradecanoylcarnitine" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H41NO4">
+      <species metaid="M_MAM02973r" sboTerm="SBO:0000247" id="M_MAM02973r" name="tetradecanoylcarnitine" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H41NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02973r">
+            <rdf:Description rdf:about="#M_MAM02973r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/hmdb/HMDB05066"/>
@@ -84338,10 +84390,10 @@
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         </annotation>
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-      <species metaid="MAM02974c" sboTerm="SBO:0000247" id="MAM02974c" name="tetradecenoylcarnitine(5)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H39NO4">
+      <species metaid="M_MAM02974c" sboTerm="SBO:0000247" id="M_MAM02974c" name="tetradecenoylcarnitine(5)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H39NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02974c">
+            <rdf:Description rdf:about="#M_MAM02974c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM163039"/>
@@ -84352,10 +84404,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02974m" sboTerm="SBO:0000247" id="MAM02974m" name="tetradecenoylcarnitine(5)" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H39NO4">
+      <species metaid="M_MAM02974m" sboTerm="SBO:0000247" id="M_MAM02974m" name="tetradecenoylcarnitine(5)" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H39NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02974m">
+            <rdf:Description rdf:about="#M_MAM02974m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM163039"/>
@@ -84366,10 +84418,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02974r" sboTerm="SBO:0000247" id="MAM02974r" name="tetradecenoylcarnitine(5)" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H39NO4">
+      <species metaid="M_MAM02974r" sboTerm="SBO:0000247" id="M_MAM02974r" name="tetradecenoylcarnitine(5)" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H39NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02974r">
+            <rdf:Description rdf:about="#M_MAM02974r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM163039"/>
@@ -84380,10 +84432,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02975c" sboTerm="SBO:0000247" id="MAM02975c" name="tetradecenoylcarnitine(7)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H39NO4">
+      <species metaid="M_MAM02975c" sboTerm="SBO:0000247" id="M_MAM02975c" name="tetradecenoylcarnitine(7)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H39NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02975c">
+            <rdf:Description rdf:about="#M_MAM02975c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M02975"/>
@@ -84393,10 +84445,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM02975m" sboTerm="SBO:0000247" id="MAM02975m" name="tetradecenoylcarnitine(7)" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H39NO4">
+      <species metaid="M_MAM02975m" sboTerm="SBO:0000247" id="M_MAM02975m" name="tetradecenoylcarnitine(7)" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H39NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02975m">
+            <rdf:Description rdf:about="#M_MAM02975m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M02975"/>
@@ -84406,10 +84458,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM02975r" sboTerm="SBO:0000247" id="MAM02975r" name="tetradecenoylcarnitine(7)" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H39NO4">
+      <species metaid="M_MAM02975r" sboTerm="SBO:0000247" id="M_MAM02975r" name="tetradecenoylcarnitine(7)" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H39NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02975r">
+            <rdf:Description rdf:about="#M_MAM02975r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M02975"/>
@@ -84419,10 +84471,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02976c" sboTerm="SBO:0000247" id="MAM02976c" name="tetradecenoylcarnitine(9)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H39NO4">
+      <species metaid="M_MAM02976c" sboTerm="SBO:0000247" id="M_MAM02976c" name="tetradecenoylcarnitine(9)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H39NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02976c">
+            <rdf:Description rdf:about="#M_MAM02976c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M02976"/>
@@ -84432,10 +84484,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02976m" sboTerm="SBO:0000247" id="MAM02976m" name="tetradecenoylcarnitine(9)" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H39NO4">
+      <species metaid="M_MAM02976m" sboTerm="SBO:0000247" id="M_MAM02976m" name="tetradecenoylcarnitine(9)" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H39NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02976m">
+            <rdf:Description rdf:about="#M_MAM02976m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M02976"/>
@@ -84445,10 +84497,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02976r" sboTerm="SBO:0000247" id="MAM02976r" name="tetradecenoylcarnitine(9)" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H39NO4">
+      <species metaid="M_MAM02976r" sboTerm="SBO:0000247" id="M_MAM02976r" name="tetradecenoylcarnitine(9)" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H39NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02976r">
+            <rdf:Description rdf:about="#M_MAM02976r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M02976"/>
@@ -84458,10 +84510,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02977c" sboTerm="SBO:0000247" id="MAM02977c" name="tetraHCA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C27H45O6">
+      <species metaid="M_MAM02977c" sboTerm="SBO:0000247" id="M_MAM02977c" name="tetraHCA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C27H45O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02977c">
+            <rdf:Description rdf:about="#M_MAM02977c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM30748"/>
@@ -84472,10 +84524,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02977m" sboTerm="SBO:0000247" id="MAM02977m" name="tetraHCA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C27H45O6">
+      <species metaid="M_MAM02977m" sboTerm="SBO:0000247" id="M_MAM02977m" name="tetraHCA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C27H45O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02977m">
+            <rdf:Description rdf:about="#M_MAM02977m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM30748"/>
@@ -84486,10 +84538,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02978c" sboTerm="SBO:0000247" id="MAM02978c" name="tetrahydrobiopterin" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H15N5O3">
+      <species metaid="M_MAM02978c" sboTerm="SBO:0000247" id="M_MAM02978c" name="tetrahydrobiopterin" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H15N5O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02978c">
+            <rdf:Description rdf:about="#M_MAM02978c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/thbpt"/>
@@ -84505,10 +84557,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02978n" sboTerm="SBO:0000247" id="MAM02978n" name="tetrahydrobiopterin" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H15N5O3">
+      <species metaid="M_MAM02978n" sboTerm="SBO:0000247" id="M_MAM02978n" name="tetrahydrobiopterin" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H15N5O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02978n">
+            <rdf:Description rdf:about="#M_MAM02978n">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/thbpt"/>
@@ -84524,10 +84576,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02979c" sboTerm="SBO:0000247" id="MAM02979c" name="tetrahydropteroyltri-L-glutamate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C29H37N9O12">
+      <species metaid="M_MAM02979c" sboTerm="SBO:0000247" id="M_MAM02979c" name="tetrahydropteroyltri-L-glutamate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C29H37N9O12">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02979c">
+            <rdf:Description rdf:about="#M_MAM02979c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:17420"/>
@@ -84540,10 +84592,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02980c" sboTerm="SBO:0000247" id="MAM02980c" name="THF" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C19H21N7O6">
+      <species metaid="M_MAM02980c" sboTerm="SBO:0000247" id="M_MAM02980c" name="THF" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C19H21N7O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02980c">
+            <rdf:Description rdf:about="#M_MAM02980c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/thf"/>
@@ -84559,10 +84611,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02980l" sboTerm="SBO:0000247" id="MAM02980l" name="THF" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C19H21N7O6">
+      <species metaid="M_MAM02980l" sboTerm="SBO:0000247" id="M_MAM02980l" name="THF" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C19H21N7O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02980l">
+            <rdf:Description rdf:about="#M_MAM02980l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/thf"/>
@@ -84578,10 +84630,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02980m" sboTerm="SBO:0000247" id="MAM02980m" name="THF" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C19H21N7O6">
+      <species metaid="M_MAM02980m" sboTerm="SBO:0000247" id="M_MAM02980m" name="THF" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C19H21N7O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02980m">
+            <rdf:Description rdf:about="#M_MAM02980m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/thf"/>
@@ -84597,10 +84649,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02980e" sboTerm="SBO:0000247" id="MAM02980e" name="THF" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C19H21N7O6">
+      <species metaid="M_MAM02980e" sboTerm="SBO:0000247" id="M_MAM02980e" name="THF" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C19H21N7O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02980e">
+            <rdf:Description rdf:about="#M_MAM02980e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/thf"/>
@@ -84616,10 +84668,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02981c" sboTerm="SBO:0000247" id="MAM02981c" name="THF-hexaglutamate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-8" fbc:chemicalFormula="C49H57N13O24">
+      <species metaid="M_MAM02981c" sboTerm="SBO:0000247" id="M_MAM02981c" name="THF-hexaglutamate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-8" fbc:chemicalFormula="C49H57N13O24">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02981c">
+            <rdf:Description rdf:about="#M_MAM02981c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM165176"/>
@@ -84629,10 +84681,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02982c" sboTerm="SBO:0000247" id="MAM02982c" name="thiamin" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C12H17N4OS">
+      <species metaid="M_MAM02982c" sboTerm="SBO:0000247" id="M_MAM02982c" name="thiamin" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C12H17N4OS">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02982c">
+            <rdf:Description rdf:about="#M_MAM02982c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/thm"/>
@@ -84649,10 +84701,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02982e" sboTerm="SBO:0000247" id="MAM02982e" name="thiamin" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C12H17N4OS">
+      <species metaid="M_MAM02982e" sboTerm="SBO:0000247" id="M_MAM02982e" name="thiamin" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C12H17N4OS">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02982e">
+            <rdf:Description rdf:about="#M_MAM02982e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/thm"/>
@@ -84669,10 +84721,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02983c" sboTerm="SBO:0000247" id="MAM02983c" name="thiamin-P" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C12H16N4O4PS">
+      <species metaid="M_MAM02983c" sboTerm="SBO:0000247" id="M_MAM02983c" name="thiamin-P" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C12H16N4O4PS">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02983c">
+            <rdf:Description rdf:about="#M_MAM02983c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/thmmp"/>
@@ -84688,10 +84740,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02983m" sboTerm="SBO:0000247" id="MAM02983m" name="thiamin-P" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C12H16N4O4PS">
+      <species metaid="M_MAM02983m" sboTerm="SBO:0000247" id="M_MAM02983m" name="thiamin-P" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C12H16N4O4PS">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02983m">
+            <rdf:Description rdf:about="#M_MAM02983m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/thmmp"/>
@@ -84707,10 +84759,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02983e" sboTerm="SBO:0000247" id="MAM02983e" name="thiamin-P" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C12H16N4O4PS">
+      <species metaid="M_MAM02983e" sboTerm="SBO:0000247" id="M_MAM02983e" name="thiamin-P" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C12H16N4O4PS">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02983e">
+            <rdf:Description rdf:about="#M_MAM02983e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/thmmp"/>
@@ -84726,10 +84778,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02984c" sboTerm="SBO:0000247" id="MAM02984c" name="thiamin-PP" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C12H16N4O7P2S">
+      <species metaid="M_MAM02984c" sboTerm="SBO:0000247" id="M_MAM02984c" name="thiamin-PP" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C12H16N4O7P2S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02984c">
+            <rdf:Description rdf:about="#M_MAM02984c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/thmpp"/>
@@ -84745,10 +84797,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02984m" sboTerm="SBO:0000247" id="MAM02984m" name="thiamin-PP" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C12H16N4O7P2S">
+      <species metaid="M_MAM02984m" sboTerm="SBO:0000247" id="M_MAM02984m" name="thiamin-PP" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C12H16N4O7P2S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02984m">
+            <rdf:Description rdf:about="#M_MAM02984m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/thmpp"/>
@@ -84764,10 +84816,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02985c" sboTerm="SBO:0000247" id="MAM02985c" name="thiamin-PPP" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C12H16N4O10P3S">
+      <species metaid="M_MAM02985c" sboTerm="SBO:0000247" id="M_MAM02985c" name="thiamin-PPP" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C12H16N4O10P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02985c">
+            <rdf:Description rdf:about="#M_MAM02985c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/thmtp"/>
@@ -84782,10 +84834,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02985e" sboTerm="SBO:0000247" id="MAM02985e" name="thiamin-PPP" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C12H16N4O10P3S">
+      <species metaid="M_MAM02985e" sboTerm="SBO:0000247" id="M_MAM02985e" name="thiamin-PPP" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C12H16N4O10P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02985e">
+            <rdf:Description rdf:about="#M_MAM02985e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/thmtp"/>
@@ -84800,10 +84852,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02986c" sboTerm="SBO:0000247" id="MAM02986c" name="thiocyanate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="CNS">
+      <species metaid="M_MAM02986c" sboTerm="SBO:0000247" id="M_MAM02986c" name="thiocyanate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="CNS">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02986c">
+            <rdf:Description rdf:about="#M_MAM02986c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/tcynt"/>
@@ -84819,10 +84871,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02986m" sboTerm="SBO:0000247" id="MAM02986m" name="thiocyanate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="CNS">
+      <species metaid="M_MAM02986m" sboTerm="SBO:0000247" id="M_MAM02986m" name="thiocyanate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="CNS">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02986m">
+            <rdf:Description rdf:about="#M_MAM02986m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/tcynt"/>
@@ -84838,10 +84890,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02986e" sboTerm="SBO:0000247" id="MAM02986e" name="thiocyanate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="CNS">
+      <species metaid="M_MAM02986e" sboTerm="SBO:0000247" id="M_MAM02986e" name="thiocyanate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="CNS">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02986e">
+            <rdf:Description rdf:about="#M_MAM02986e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/tcynt"/>
@@ -84857,10 +84909,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02987c" sboTerm="SBO:0000247" id="MAM02987c" name="thiocysteine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H7NO2S2">
+      <species metaid="M_MAM02987c" sboTerm="SBO:0000247" id="M_MAM02987c" name="thiocysteine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H7NO2S2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02987c">
+            <rdf:Description rdf:about="#M_MAM02987c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/thcys"/>
@@ -84876,10 +84928,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02988c" sboTerm="SBO:0000247" id="MAM02988c" name="thiol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="HSR">
+      <species metaid="M_MAM02988c" sboTerm="SBO:0000247" id="M_MAM02988c" name="thiol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="HSR">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02988c">
+            <rdf:Description rdf:about="#M_MAM02988c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:29256"/>
@@ -84893,10 +84945,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02990c" sboTerm="SBO:0000247" id="MAM02990c" name="thioredoxin" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C525H816N128O160S8">
+      <species metaid="M_MAM02990c" sboTerm="SBO:0000247" id="M_MAM02990c" name="thioredoxin" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C525H816N128O160S8">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02990c">
+            <rdf:Description rdf:about="#M_MAM02990c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/trdrd"/>
@@ -84910,10 +84962,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02990m" sboTerm="SBO:0000247" id="MAM02990m" name="thioredoxin" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C525H816N128O160S8">
+      <species metaid="M_MAM02990m" sboTerm="SBO:0000247" id="M_MAM02990m" name="thioredoxin" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C525H816N128O160S8">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02990m">
+            <rdf:Description rdf:about="#M_MAM02990m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/trdrd"/>
@@ -84927,10 +84979,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02990n" sboTerm="SBO:0000247" id="MAM02990n" name="thioredoxin" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C525H816N128O160S8">
+      <species metaid="M_MAM02990n" sboTerm="SBO:0000247" id="M_MAM02990n" name="thioredoxin" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C525H816N128O160S8">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02990n">
+            <rdf:Description rdf:about="#M_MAM02990n">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/trdrd"/>
@@ -84944,10 +84996,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02991c" sboTerm="SBO:0000247" id="MAM02991c" name="thiosulfate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="O3S2">
+      <species metaid="M_MAM02991c" sboTerm="SBO:0000247" id="M_MAM02991c" name="thiosulfate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="O3S2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02991c">
+            <rdf:Description rdf:about="#M_MAM02991c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/tsul"/>
@@ -84963,10 +85015,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02991m" sboTerm="SBO:0000247" id="MAM02991m" name="thiosulfate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="O3S2">
+      <species metaid="M_MAM02991m" sboTerm="SBO:0000247" id="M_MAM02991m" name="thiosulfate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="O3S2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02991m">
+            <rdf:Description rdf:about="#M_MAM02991m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/tsul"/>
@@ -84982,10 +85034,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02991e" sboTerm="SBO:0000247" id="MAM02991e" name="thiosulfate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="O3S2">
+      <species metaid="M_MAM02991e" sboTerm="SBO:0000247" id="M_MAM02991e" name="thiosulfate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="O3S2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02991e">
+            <rdf:Description rdf:about="#M_MAM02991e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/tsul"/>
@@ -85001,10 +85053,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02992c" sboTerm="SBO:0000247" id="MAM02992c" name="threonate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C4H7O5">
+      <species metaid="M_MAM02992c" sboTerm="SBO:0000247" id="M_MAM02992c" name="threonate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C4H7O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02992c">
+            <rdf:Description rdf:about="#M_MAM02992c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/thrnt"/>
@@ -85019,10 +85071,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02993c" sboTerm="SBO:0000247" id="MAM02993c" name="threonine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H9NO3">
+      <species metaid="M_MAM02993c" sboTerm="SBO:0000247" id="M_MAM02993c" name="threonine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H9NO3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02993c">
+            <rdf:Description rdf:about="#M_MAM02993c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/thr__L"/>
@@ -85038,10 +85090,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02993l" sboTerm="SBO:0000247" id="MAM02993l" name="threonine" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H9NO3">
+      <species metaid="M_MAM02993l" sboTerm="SBO:0000247" id="M_MAM02993l" name="threonine" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H9NO3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02993l">
+            <rdf:Description rdf:about="#M_MAM02993l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/thr__L"/>
@@ -85057,10 +85109,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02993m" sboTerm="SBO:0000247" id="MAM02993m" name="threonine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H9NO3">
+      <species metaid="M_MAM02993m" sboTerm="SBO:0000247" id="M_MAM02993m" name="threonine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H9NO3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02993m">
+            <rdf:Description rdf:about="#M_MAM02993m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/thr__L"/>
@@ -85076,10 +85128,10 @@
           </rdf:RDF>
         </annotation>
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+      <species metaid="M_MAM02993e" sboTerm="SBO:0000247" id="M_MAM02993e" name="threonine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H9NO3">
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-            <rdf:Description rdf:about="#MAM02993e">
+            <rdf:Description rdf:about="#M_MAM02993e">
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@@ -85095,10 +85147,10 @@
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+      <species metaid="M_MAM02994c" sboTerm="SBO:0000247" id="M_MAM02994c" name="thromboxane A2" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O5">
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-            <rdf:Description rdf:about="#MAM02994c">
+            <rdf:Description rdf:about="#M_MAM02994c">
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@@ -85115,10 +85167,10 @@
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+      <species metaid="M_MAM02994r" sboTerm="SBO:0000247" id="M_MAM02994r" name="thromboxane A2" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O5">
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           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02994r">
+            <rdf:Description rdf:about="#M_MAM02994r">
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@@ -85135,10 +85187,10 @@
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+      <species metaid="M_MAM02994e" sboTerm="SBO:0000247" id="M_MAM02994e" name="thromboxane A2" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02994e">
+            <rdf:Description rdf:about="#M_MAM02994e">
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@@ -85155,10 +85207,10 @@
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+      <species metaid="M_MAM02995c" sboTerm="SBO:0000247" id="M_MAM02995c" name="thromboxane B2" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H33O6">
         <annotation>
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-            <rdf:Description rdf:about="#MAM02995c">
+            <rdf:Description rdf:about="#M_MAM02995c">
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@@ -85175,10 +85227,10 @@
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+      <species metaid="M_MAM02995r" sboTerm="SBO:0000247" id="M_MAM02995r" name="thromboxane B2" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H33O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02995r">
+            <rdf:Description rdf:about="#M_MAM02995r">
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@@ -85194,10 +85246,10 @@
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+      <species metaid="M_MAM02995e" sboTerm="SBO:0000247" id="M_MAM02995e" name="thromboxane B2" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H33O6">
         <annotation>
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-            <rdf:Description rdf:about="#MAM02995e">
+            <rdf:Description rdf:about="#M_MAM02995e">
               <bqbiol:is>
                 <rdf:Bag>
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@@ -85214,10 +85266,10 @@
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+      <species metaid="M_MAM02996c" sboTerm="SBO:0000247" id="M_MAM02996c" name="thymidine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H14N2O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02996c">
+            <rdf:Description rdf:about="#M_MAM02996c">
               <bqbiol:is>
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                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/thymd"/>
@@ -85233,10 +85285,10 @@
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+      <species metaid="M_MAM02996l" sboTerm="SBO:0000247" id="M_MAM02996l" name="thymidine" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H14N2O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02996l">
+            <rdf:Description rdf:about="#M_MAM02996l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/thymd"/>
@@ -85252,10 +85304,10 @@
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+      <species metaid="M_MAM02996m" sboTerm="SBO:0000247" id="M_MAM02996m" name="thymidine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H14N2O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02996m">
+            <rdf:Description rdf:about="#M_MAM02996m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/thymd"/>
@@ -85271,10 +85323,10 @@
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-      <species metaid="MAM02996e" sboTerm="SBO:0000247" id="MAM02996e" name="thymidine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H14N2O5">
+      <species metaid="M_MAM02996e" sboTerm="SBO:0000247" id="M_MAM02996e" name="thymidine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H14N2O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02996e">
+            <rdf:Description rdf:about="#M_MAM02996e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/thymd"/>
@@ -85290,10 +85342,10 @@
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+      <species metaid="M_MAM02997c" sboTerm="SBO:0000247" id="M_MAM02997c" name="thymine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H6N2O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02997c">
+            <rdf:Description rdf:about="#M_MAM02997c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/thym"/>
@@ -85309,10 +85361,10 @@
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-      <species metaid="MAM02997m" sboTerm="SBO:0000247" id="MAM02997m" name="thymine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H6N2O2">
+      <species metaid="M_MAM02997m" sboTerm="SBO:0000247" id="M_MAM02997m" name="thymine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H6N2O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02997m">
+            <rdf:Description rdf:about="#M_MAM02997m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/thym"/>
@@ -85328,10 +85380,10 @@
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-      <species metaid="MAM02997e" sboTerm="SBO:0000247" id="MAM02997e" name="thymine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H6N2O2">
+      <species metaid="M_MAM02997e" sboTerm="SBO:0000247" id="M_MAM02997e" name="thymine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H6N2O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02997e">
+            <rdf:Description rdf:about="#M_MAM02997e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/thym"/>
@@ -85347,10 +85399,10 @@
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-      <species metaid="MAM02998c" sboTerm="SBO:0000247" id="MAM02998c" name="thyroxine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C15H11I4NO4">
+      <species metaid="M_MAM02998c" sboTerm="SBO:0000247" id="M_MAM02998c" name="thyroxine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C15H11I4NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02998c">
+            <rdf:Description rdf:about="#M_MAM02998c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/thyox__L"/>
@@ -85367,10 +85419,10 @@
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-      <species metaid="MAM02998r" sboTerm="SBO:0000247" id="MAM02998r" name="thyroxine" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C15H11I4NO4">
+      <species metaid="M_MAM02998r" sboTerm="SBO:0000247" id="M_MAM02998r" name="thyroxine" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C15H11I4NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02998r">
+            <rdf:Description rdf:about="#M_MAM02998r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/thyox__L"/>
@@ -85387,10 +85439,10 @@
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-      <species metaid="MAM02998e" sboTerm="SBO:0000247" id="MAM02998e" name="thyroxine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C15H11I4NO4">
+      <species metaid="M_MAM02998e" sboTerm="SBO:0000247" id="M_MAM02998e" name="thyroxine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C15H11I4NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02998e">
+            <rdf:Description rdf:about="#M_MAM02998e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/thyox__L"/>
@@ -85407,10 +85459,10 @@
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         </annotation>
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-      <species metaid="MAM02999m" sboTerm="SBO:0000247" id="MAM02999m" name="tiglyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C26H38N7O17P3S">
+      <species metaid="M_MAM02999m" sboTerm="SBO:0000247" id="M_MAM02999m" name="tiglyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C26H38N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02999m">
+            <rdf:Description rdf:about="#M_MAM02999m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/2mb2coa"/>
@@ -85426,10 +85478,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM03000g" sboTerm="SBO:0000247" id="MAM03000g" name="Tn-antigen" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H14NO5X">
+      <species metaid="M_MAM03000g" sboTerm="SBO:0000247" id="M_MAM03000g" name="Tn-antigen" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H14NO5X">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03000g">
+            <rdf:Description rdf:about="#M_MAM03000g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/Tn_antigen"/>
@@ -85442,10 +85494,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03000l" sboTerm="SBO:0000247" id="MAM03000l" name="Tn-antigen" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H14NO5X">
+      <species metaid="M_MAM03000l" sboTerm="SBO:0000247" id="M_MAM03000l" name="Tn-antigen" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H14NO5X">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03000l">
+            <rdf:Description rdf:about="#M_MAM03000l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/Tn_antigen"/>
@@ -85458,10 +85510,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03001c" sboTerm="SBO:0000247" id="MAM03001c" name="tolbutamide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C12H18N2O3S">
+      <species metaid="M_MAM03001c" sboTerm="SBO:0000247" id="M_MAM03001c" name="tolbutamide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C12H18N2O3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03001c">
+            <rdf:Description rdf:about="#M_MAM03001c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/tolbutamide"/>
@@ -85476,10 +85528,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03001e" sboTerm="SBO:0000247" id="MAM03001e" name="tolbutamide" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C12H18N2O3S">
+      <species metaid="M_MAM03001e" sboTerm="SBO:0000247" id="M_MAM03001e" name="tolbutamide" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C12H18N2O3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03001e">
+            <rdf:Description rdf:about="#M_MAM03001e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/tolbutamide"/>
@@ -85494,10 +85546,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03002c" sboTerm="SBO:0000247" id="MAM03002c" name="trans,cis,cis,cis,cis-2,10,13,16,19-docosapentaenoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C43H64N7O17P3S">
+      <species metaid="M_MAM03002c" sboTerm="SBO:0000247" id="M_MAM03002c" name="trans,cis,cis,cis,cis-2,10,13,16,19-docosapentaenoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C43H64N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03002c">
+            <rdf:Description rdf:about="#M_MAM03002c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM161731"/>
@@ -85508,10 +85560,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03003c" sboTerm="SBO:0000247" id="MAM03003c" name="trans,cis,cis,cis,cis-2,12,15,18,21-tetracosapentaenoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C45H68N7O17P3S">
+      <species metaid="M_MAM03003c" sboTerm="SBO:0000247" id="M_MAM03003c" name="trans,cis,cis,cis,cis-2,12,15,18,21-tetracosapentaenoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C45H68N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03003c">
+            <rdf:Description rdf:about="#M_MAM03003c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM161732"/>
@@ -85522,10 +85574,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03004c" sboTerm="SBO:0000247" id="MAM03004c" name="trans,cis,cis,cis-2,10,13,16-docosatetraenoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C43H66N7O17P3S">
+      <species metaid="M_MAM03004c" sboTerm="SBO:0000247" id="M_MAM03004c" name="trans,cis,cis,cis-2,10,13,16-docosatetraenoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C43H66N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03004c">
+            <rdf:Description rdf:about="#M_MAM03004c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM161733"/>
@@ -85536,10 +85588,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03005c" sboTerm="SBO:0000247" id="MAM03005c" name="trans,cis,cis,cis-2,11,14,17-eicosatetraenoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H62N7O17P3S">
+      <species metaid="M_MAM03005c" sboTerm="SBO:0000247" id="M_MAM03005c" name="trans,cis,cis,cis-2,11,14,17-eicosatetraenoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H62N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03005c">
+            <rdf:Description rdf:about="#M_MAM03005c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:76456"/>
@@ -85550,10 +85602,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03006c" sboTerm="SBO:0000247" id="MAM03006c" name="trans,cis,cis,cis-2,13,16,19-docosatetraenoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C43H66N7O17P3S">
+      <species metaid="M_MAM03006c" sboTerm="SBO:0000247" id="M_MAM03006c" name="trans,cis,cis,cis-2,13,16,19-docosatetraenoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C43H66N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03006c">
+            <rdf:Description rdf:about="#M_MAM03006c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M03006"/>
@@ -85563,10 +85615,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03007c" sboTerm="SBO:0000247" id="MAM03007c" name="trans,cis,cis-2,11,14-eicosatrienoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H64N7O17P3S">
+      <species metaid="M_MAM03007c" sboTerm="SBO:0000247" id="M_MAM03007c" name="trans,cis,cis-2,11,14-eicosatrienoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H64N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03007c">
+            <rdf:Description rdf:about="#M_MAM03007c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM165186"/>
@@ -85577,10 +85629,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03008c" sboTerm="SBO:0000247" id="MAM03008c" name="trans,cis,cis-2,13,16-docasatrienoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C43H68N7O17P3S">
+      <species metaid="M_MAM03008c" sboTerm="SBO:0000247" id="M_MAM03008c" name="trans,cis,cis-2,13,16-docasatrienoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C43H68N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03008c">
+            <rdf:Description rdf:about="#M_MAM03008c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M03008"/>
@@ -85590,10 +85642,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03009m" sboTerm="SBO:0000247" id="MAM03009m" name="trans,cis,cis-2,7,10-hexadecatrienoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C37H56N7O17P3S">
+      <species metaid="M_MAM03009m" sboTerm="SBO:0000247" id="M_MAM03009m" name="trans,cis,cis-2,7,10-hexadecatrienoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C37H56N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03009m">
+            <rdf:Description rdf:about="#M_MAM03009m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/CE2433"/>
@@ -85603,10 +85655,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03009x" sboTerm="SBO:0000247" id="MAM03009x" name="trans,cis,cis-2,7,10-hexadecatrienoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C37H56N7O17P3S">
+      <species metaid="M_MAM03009x" sboTerm="SBO:0000247" id="M_MAM03009x" name="trans,cis,cis-2,7,10-hexadecatrienoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C37H56N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03009x">
+            <rdf:Description rdf:about="#M_MAM03009x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/CE2433"/>
@@ -85616,10 +85668,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03010m" sboTerm="SBO:0000247" id="MAM03010m" name="trans,cis,cis-2,9,12-octadecatrienoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C39H60N7O17P3S">
+      <species metaid="M_MAM03010m" sboTerm="SBO:0000247" id="M_MAM03010m" name="trans,cis,cis-2,9,12-octadecatrienoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C39H60N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03010m">
+            <rdf:Description rdf:about="#M_MAM03010m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/CE2434"/>
@@ -85629,10 +85681,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03010x" sboTerm="SBO:0000247" id="MAM03010x" name="trans,cis,cis-2,9,12-octadecatrienoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C39H60N7O17P3S">
+      <species metaid="M_MAM03010x" sboTerm="SBO:0000247" id="M_MAM03010x" name="trans,cis,cis-2,9,12-octadecatrienoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C39H60N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03010x">
+            <rdf:Description rdf:about="#M_MAM03010x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/CE2434"/>
@@ -85642,10 +85694,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03011c" sboTerm="SBO:0000247" id="MAM03011c" name="trans,cis-2,11-docosadienoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C43H70N7O17P3S">
+      <species metaid="M_MAM03011c" sboTerm="SBO:0000247" id="M_MAM03011c" name="trans,cis-2,11-docosadienoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C43H70N7O17P3S">
         <annotation>
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+            <rdf:Description rdf:about="#M_MAM03011c">
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@@ -85655,10 +85707,10 @@
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+      <species metaid="M_MAM03012c" sboTerm="SBO:0000247" id="M_MAM03012c" name="trans,cis-2,11-eicosadienoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H66N7O17P3S">
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+            <rdf:Description rdf:about="#M_MAM03012c">
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@@ -85669,10 +85721,10 @@
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+      <species metaid="M_MAM03012m" sboTerm="SBO:0000247" id="M_MAM03012m" name="trans,cis-2,11-eicosadienoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H66N7O17P3S">
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+            <rdf:Description rdf:about="#M_MAM03012m">
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@@ -85683,10 +85735,10 @@
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+      <species metaid="M_MAM03012x" sboTerm="SBO:0000247" id="M_MAM03012x" name="trans,cis-2,11-eicosadienoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H66N7O17P3S">
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+            <rdf:Description rdf:about="#M_MAM03012x">
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@@ -85697,10 +85749,10 @@
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+      <species metaid="M_MAM03013c" sboTerm="SBO:0000247" id="M_MAM03013c" name="trans,cis-2,13-docosadienoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C43H70N7O17P3S">
         <annotation>
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-            <rdf:Description rdf:about="#MAM03013c">
+            <rdf:Description rdf:about="#M_MAM03013c">
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@@ -85711,10 +85763,10 @@
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+      <species metaid="M_MAM03013m" sboTerm="SBO:0000247" id="M_MAM03013m" name="trans,cis-2,13-docosadienoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C43H70N7O17P3S">
         <annotation>
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-            <rdf:Description rdf:about="#MAM03013m">
+            <rdf:Description rdf:about="#M_MAM03013m">
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@@ -85725,10 +85777,10 @@
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+      <species metaid="M_MAM03013x" sboTerm="SBO:0000247" id="M_MAM03013x" name="trans,cis-2,13-docosadienoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C43H70N7O17P3S">
         <annotation>
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-            <rdf:Description rdf:about="#MAM03013x">
+            <rdf:Description rdf:about="#M_MAM03013x">
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@@ -85739,10 +85791,10 @@
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+      <species metaid="M_MAM03014c" sboTerm="SBO:0000247" id="M_MAM03014c" name="trans,cis-2,13-eicosadienoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H66N7O17P3S">
         <annotation>
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-            <rdf:Description rdf:about="#MAM03014c">
+            <rdf:Description rdf:about="#M_MAM03014c">
               <bqbiol:is>
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                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M03014"/>
@@ -85752,10 +85804,10 @@
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+      <species metaid="M_MAM03014m" sboTerm="SBO:0000247" id="M_MAM03014m" name="trans,cis-2,13-eicosadienoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H66N7O17P3S">
         <annotation>
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-            <rdf:Description rdf:about="#MAM03014m">
+            <rdf:Description rdf:about="#M_MAM03014m">
               <bqbiol:is>
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                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M03014"/>
@@ -85765,10 +85817,10 @@
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+      <species metaid="M_MAM03014x" sboTerm="SBO:0000247" id="M_MAM03014x" name="trans,cis-2,13-eicosadienoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H66N7O17P3S">
         <annotation>
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-            <rdf:Description rdf:about="#MAM03014x">
+            <rdf:Description rdf:about="#M_MAM03014x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M03014"/>
@@ -85778,10 +85830,10 @@
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+      <species metaid="M_MAM03015c" sboTerm="SBO:0000247" id="M_MAM03015c" name="trans,cis-2,15-tetracosadienoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C45H74N7O17P3S">
         <annotation>
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-            <rdf:Description rdf:about="#MAM03015c">
+            <rdf:Description rdf:about="#M_MAM03015c">
               <bqbiol:is>
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                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM163590"/>
@@ -85792,10 +85844,10 @@
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-      <species metaid="MAM03015x" sboTerm="SBO:0000247" id="MAM03015x" name="trans,cis-2,15-tetracosadienoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C45H74N7O17P3S">
+      <species metaid="M_MAM03015x" sboTerm="SBO:0000247" id="M_MAM03015x" name="trans,cis-2,15-tetracosadienoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C45H74N7O17P3S">
         <annotation>
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-            <rdf:Description rdf:about="#MAM03015x">
+            <rdf:Description rdf:about="#M_MAM03015x">
               <bqbiol:is>
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                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM163590"/>
@@ -85806,10 +85858,10 @@
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-      <species metaid="MAM03016c" sboTerm="SBO:0000247" id="MAM03016c" name="trans,cis-2,17-hexacosadienoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C47H78N7O17P3S">
+      <species metaid="M_MAM03016c" sboTerm="SBO:0000247" id="M_MAM03016c" name="trans,cis-2,17-hexacosadienoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C47H78N7O17P3S">
         <annotation>
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-            <rdf:Description rdf:about="#MAM03016c">
+            <rdf:Description rdf:about="#M_MAM03016c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M03016"/>
@@ -85819,10 +85871,10 @@
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+      <species metaid="M_MAM03016x" sboTerm="SBO:0000247" id="M_MAM03016x" name="trans,cis-2,17-hexacosadienoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C47H78N7O17P3S">
         <annotation>
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-            <rdf:Description rdf:about="#MAM03016x">
+            <rdf:Description rdf:about="#M_MAM03016x">
               <bqbiol:is>
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                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M03016"/>
@@ -85832,10 +85884,10 @@
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-      <species metaid="MAM03017c" sboTerm="SBO:0000247" id="MAM03017c" name="trans,cis-2,8,11-eicosatrienoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H64N7O17P3S">
+      <species metaid="M_MAM03017c" sboTerm="SBO:0000247" id="M_MAM03017c" name="trans,cis-2,8,11-eicosatrienoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H64N7O17P3S">
         <annotation>
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-            <rdf:Description rdf:about="#MAM03017c">
+            <rdf:Description rdf:about="#M_MAM03017c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M03017"/>
@@ -85845,10 +85897,10 @@
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-      <species metaid="MAM03018c" sboTerm="SBO:0000247" id="MAM03018c" name="trans,cis-2,9-eicosadienoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H66N7O17P3S">
+      <species metaid="M_MAM03018c" sboTerm="SBO:0000247" id="M_MAM03018c" name="trans,cis-2,9-eicosadienoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H66N7O17P3S">
         <annotation>
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-            <rdf:Description rdf:about="#MAM03018c">
+            <rdf:Description rdf:about="#M_MAM03018c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M03018"/>
@@ -85858,10 +85910,10 @@
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-      <species metaid="MAM03019m" sboTerm="SBO:0000247" id="MAM03019m" name="trans,cis-hexadeca-2,7-dienoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C37H58N7O17P3S">
+      <species metaid="M_MAM03019m" sboTerm="SBO:0000247" id="M_MAM03019m" name="trans,cis-hexadeca-2,7-dienoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C37H58N7O17P3S">
         <annotation>
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-            <rdf:Description rdf:about="#MAM03019m">
+            <rdf:Description rdf:about="#M_MAM03019m">
               <bqbiol:is>
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                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:87717"/>
@@ -85872,10 +85924,10 @@
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+      <species metaid="M_MAM03019x" sboTerm="SBO:0000247" id="M_MAM03019x" name="trans,cis-hexadeca-2,7-dienoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C37H58N7O17P3S">
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-            <rdf:Description rdf:about="#MAM03019x">
+            <rdf:Description rdf:about="#M_MAM03019x">
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@@ -85886,10 +85938,10 @@
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+      <species metaid="M_MAM03020m" sboTerm="SBO:0000247" id="M_MAM03020m" name="trans,cis-hexadeca-2,9-dienoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C37H58N7O17P3S">
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-            <rdf:Description rdf:about="#MAM03020m">
+            <rdf:Description rdf:about="#M_MAM03020m">
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@@ -85901,10 +85953,10 @@
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+      <species metaid="M_MAM03020x" sboTerm="SBO:0000247" id="M_MAM03020x" name="trans,cis-hexadeca-2,9-dienoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C37H58N7O17P3S">
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-            <rdf:Description rdf:about="#MAM03020x">
+            <rdf:Description rdf:about="#M_MAM03020x">
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@@ -85916,10 +85968,10 @@
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-      <species metaid="MAM03021m" sboTerm="SBO:0000247" id="MAM03021m" name="trans,cis-lauro-2,6-dienoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C33H50N7O17P3S">
+      <species metaid="M_MAM03021m" sboTerm="SBO:0000247" id="M_MAM03021m" name="trans,cis-lauro-2,6-dienoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C33H50N7O17P3S">
         <annotation>
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-            <rdf:Description rdf:about="#MAM03021m">
+            <rdf:Description rdf:about="#M_MAM03021m">
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@@ -85934,10 +85986,10 @@
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+      <species metaid="M_MAM03021x" sboTerm="SBO:0000247" id="M_MAM03021x" name="trans,cis-lauro-2,6-dienoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C33H50N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03021x">
+            <rdf:Description rdf:about="#M_MAM03021x">
               <bqbiol:is>
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                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:28387"/>
@@ -85952,10 +86004,10 @@
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+      <species metaid="M_MAM03022m" sboTerm="SBO:0000247" id="M_MAM03022m" name="trans,cis-myristo-2,5-dienoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C35H54N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03022m">
+            <rdf:Description rdf:about="#M_MAM03022m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:87701"/>
@@ -85966,10 +86018,10 @@
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+      <species metaid="M_MAM03022x" sboTerm="SBO:0000247" id="M_MAM03022x" name="trans,cis-myristo-2,5-dienoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C35H54N7O17P3S">
         <annotation>
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-            <rdf:Description rdf:about="#MAM03022x">
+            <rdf:Description rdf:about="#M_MAM03022x">
               <bqbiol:is>
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                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:87701"/>
@@ -85980,10 +86032,10 @@
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+      <species metaid="M_MAM03023m" sboTerm="SBO:0000247" id="M_MAM03023m" name="trans,cis-myristo-2,7-dienoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C35H54N7O17P3S">
         <annotation>
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-            <rdf:Description rdf:about="#MAM03023m">
+            <rdf:Description rdf:about="#M_MAM03023m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/CE2594"/>
@@ -85994,10 +86046,10 @@
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+      <species metaid="M_MAM03023x" sboTerm="SBO:0000247" id="M_MAM03023x" name="trans,cis-myristo-2,7-dienoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C35H54N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03023x">
+            <rdf:Description rdf:about="#M_MAM03023x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/CE2594"/>
@@ -86008,10 +86060,10 @@
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+      <species metaid="M_MAM03024m" sboTerm="SBO:0000247" id="M_MAM03024m" name="trans,cis-octadeca-2,11-dienoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C39H62N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03024m">
+            <rdf:Description rdf:about="#M_MAM03024m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:76558"/>
@@ -86022,10 +86074,10 @@
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-      <species metaid="MAM03024x" sboTerm="SBO:0000247" id="MAM03024x" name="trans,cis-octadeca-2,11-dienoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C39H62N7O17P3S">
+      <species metaid="M_MAM03024x" sboTerm="SBO:0000247" id="M_MAM03024x" name="trans,cis-octadeca-2,11-dienoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C39H62N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03024x">
+            <rdf:Description rdf:about="#M_MAM03024x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:76558"/>
@@ -86036,10 +86088,10 @@
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-      <species metaid="MAM03025m" sboTerm="SBO:0000247" id="MAM03025m" name="trans,cis-octadeca-2,9-dienoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C39H62N7O17P3S">
+      <species metaid="M_MAM03025m" sboTerm="SBO:0000247" id="M_MAM03025m" name="trans,cis-octadeca-2,9-dienoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C39H62N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03025m">
+            <rdf:Description rdf:about="#M_MAM03025m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:77553"/>
@@ -86050,10 +86102,10 @@
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-      <species metaid="MAM03025x" sboTerm="SBO:0000247" id="MAM03025x" name="trans,cis-octadeca-2,9-dienoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C39H62N7O17P3S">
+      <species metaid="M_MAM03025x" sboTerm="SBO:0000247" id="M_MAM03025x" name="trans,cis-octadeca-2,9-dienoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C39H62N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03025x">
+            <rdf:Description rdf:about="#M_MAM03025x">
               <bqbiol:is>
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                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:77553"/>
@@ -86064,10 +86116,10 @@
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-      <species metaid="MAM03026c" sboTerm="SBO:0000247" id="MAM03026c" name="trans,trans,cis-geranyl-geranyl-pp" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C20H33O7P2">
+      <species metaid="M_MAM03026c" sboTerm="SBO:0000247" id="M_MAM03026c" name="trans,trans,cis-geranyl-geranyl-pp" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C20H33O7P2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03026c">
+            <rdf:Description rdf:about="#M_MAM03026c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ttc_ggdp"/>
@@ -86081,10 +86133,10 @@
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-      <species metaid="MAM03027x" sboTerm="SBO:0000247" id="MAM03027x" name="trans-2,3-dehydropristanoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C40H66N7O17P3S">
+      <species metaid="M_MAM03027x" sboTerm="SBO:0000247" id="M_MAM03027x" name="trans-2,3-dehydropristanoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C40H66N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03027x">
+            <rdf:Description rdf:about="#M_MAM03027x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:77293"/>
@@ -86097,10 +86149,10 @@
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-      <species metaid="MAM03028x" sboTerm="SBO:0000247" id="MAM03028x" name="trans-2-all-cis-6,9,12,15,18-tetracosahexaenoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C45H66N7O17P3S">
+      <species metaid="M_MAM03028x" sboTerm="SBO:0000247" id="M_MAM03028x" name="trans-2-all-cis-6,9,12,15,18-tetracosahexaenoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C45H66N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03028x">
+            <rdf:Description rdf:about="#M_MAM03028x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:76364"/>
@@ -86112,10 +86164,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM03029c" sboTerm="SBO:0000247" id="MAM03029c" name="trans-2-cis,cis,cis-8,11,14-eicosatetraenoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H62N7O17P3S">
+      <species metaid="M_MAM03029c" sboTerm="SBO:0000247" id="M_MAM03029c" name="trans-2-cis,cis,cis-8,11,14-eicosatetraenoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H62N7O17P3S">
         <annotation>
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+            <rdf:Description rdf:about="#M_MAM03029c">
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@@ -86127,10 +86179,10 @@
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+      <species metaid="M_MAM03029m" sboTerm="SBO:0000247" id="M_MAM03029m" name="trans-2-cis,cis,cis-8,11,14-eicosatetraenoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H62N7O17P3S">
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+            <rdf:Description rdf:about="#M_MAM03029m">
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@@ -86142,10 +86194,10 @@
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+      <species metaid="M_MAM03029x" sboTerm="SBO:0000247" id="M_MAM03029x" name="trans-2-cis,cis,cis-8,11,14-eicosatetraenoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H62N7O17P3S">
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-            <rdf:Description rdf:about="#MAM03029x">
+            <rdf:Description rdf:about="#M_MAM03029x">
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@@ -86157,10 +86209,10 @@
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+      <species metaid="M_MAM03030m" sboTerm="SBO:0000247" id="M_MAM03030m" name="trans-2-cis,cis-5,8-tetradecatrienoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C35H52N7O17P3S">
         <annotation>
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-            <rdf:Description rdf:about="#MAM03030m">
+            <rdf:Description rdf:about="#M_MAM03030m">
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                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/CE2432"/>
@@ -86170,10 +86222,10 @@
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+      <species metaid="M_MAM03030x" sboTerm="SBO:0000247" id="M_MAM03030x" name="trans-2-cis,cis-5,8-tetradecatrienoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C35H52N7O17P3S">
         <annotation>
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-            <rdf:Description rdf:about="#MAM03030x">
+            <rdf:Description rdf:about="#M_MAM03030x">
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                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/CE2432"/>
@@ -86183,10 +86235,10 @@
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+      <species metaid="M_MAM03031m" sboTerm="SBO:0000247" id="M_MAM03031m" name="trans-2-methyl-5-isopropylhexa-2,5-dienoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C31H46N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03031m">
+            <rdf:Description rdf:about="#M_MAM03031m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/t2m26dcoa"/>
@@ -86201,10 +86253,10 @@
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-      <species metaid="MAM03031x" sboTerm="SBO:0000247" id="MAM03031x" name="trans-2-methyl-5-isopropylhexa-2,5-dienoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C31H46N7O17P3S">
+      <species metaid="M_MAM03031x" sboTerm="SBO:0000247" id="M_MAM03031x" name="trans-2-methyl-5-isopropylhexa-2,5-dienoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C31H46N7O17P3S">
         <annotation>
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-            <rdf:Description rdf:about="#MAM03031x">
+            <rdf:Description rdf:about="#M_MAM03031x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/t2m26dcoa"/>
@@ -86219,10 +86271,10 @@
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-      <species metaid="MAM03032c" sboTerm="SBO:0000247" id="MAM03032c" name="trans-3,4-dihydro-3,4-dihydroxy-7,12-dimethylbenz[a]anthracene" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H18O2">
+      <species metaid="M_MAM03032c" sboTerm="SBO:0000247" id="M_MAM03032c" name="trans-3,4-dihydro-3,4-dihydroxy-7,12-dimethylbenz[a]anthracene" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H18O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03032c">
+            <rdf:Description rdf:about="#M_MAM03032c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C19490"/>
@@ -86234,10 +86286,10 @@
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+      <species metaid="M_MAM03033m" sboTerm="SBO:0000247" id="M_MAM03033m" name="trans-3-cis-5,8,11,14-eicosapentaenoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H60N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03033m">
+            <rdf:Description rdf:about="#M_MAM03033m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:85090"/>
@@ -86248,10 +86300,10 @@
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+      <species metaid="M_MAM03033x" sboTerm="SBO:0000247" id="M_MAM03033x" name="trans-3-cis-5,8,11,14-eicosapentaenoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H60N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03033x">
+            <rdf:Description rdf:about="#M_MAM03033x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:85090"/>
@@ -86262,10 +86314,10 @@
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+      <species metaid="M_MAM03034m" sboTerm="SBO:0000247" id="M_MAM03034m" name="trans-3-cis-8,11,14-eicosatetraenoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H62N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03034m">
+            <rdf:Description rdf:about="#M_MAM03034m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM165154"/>
@@ -86276,10 +86328,10 @@
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-      <species metaid="MAM03034x" sboTerm="SBO:0000247" id="MAM03034x" name="trans-3-cis-8,11,14-eicosatetraenoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H62N7O17P3S">
+      <species metaid="M_MAM03034x" sboTerm="SBO:0000247" id="M_MAM03034x" name="trans-3-cis-8,11,14-eicosatetraenoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H62N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03034x">
+            <rdf:Description rdf:about="#M_MAM03034x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM165154"/>
@@ -86290,10 +86342,10 @@
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-      <species metaid="MAM03035m" sboTerm="SBO:0000247" id="MAM03035m" name="trans-3-decenoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C31H48N7O17P3S">
+      <species metaid="M_MAM03035m" sboTerm="SBO:0000247" id="M_MAM03035m" name="trans-3-decenoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C31H48N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03035m">
+            <rdf:Description rdf:about="#M_MAM03035m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:84793"/>
@@ -86306,10 +86358,10 @@
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-      <species metaid="MAM03035x" sboTerm="SBO:0000247" id="MAM03035x" name="trans-3-decenoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C31H48N7O17P3S">
+      <species metaid="M_MAM03035x" sboTerm="SBO:0000247" id="M_MAM03035x" name="trans-3-decenoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C31H48N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03035x">
+            <rdf:Description rdf:about="#M_MAM03035x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:84793"/>
@@ -86322,10 +86374,10 @@
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         </annotation>
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-      <species metaid="MAM03036c" sboTerm="SBO:0000247" id="MAM03036c" name="trans-4,5-epoxy-(2E)-decenal" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H16O2">
+      <species metaid="M_MAM03036c" sboTerm="SBO:0000247" id="M_MAM03036c" name="trans-4,5-epoxy-(2E)-decenal" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H16O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03036c">
+            <rdf:Description rdf:about="#M_MAM03036c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM87579"/>
@@ -86337,10 +86389,10 @@
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-      <species metaid="MAM03037c" sboTerm="SBO:0000247" id="MAM03037c" name="trans-4-hydroxy-L-proline" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H9NO3">
+      <species metaid="M_MAM03037c" sboTerm="SBO:0000247" id="M_MAM03037c" name="trans-4-hydroxy-L-proline" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H9NO3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03037c">
+            <rdf:Description rdf:about="#M_MAM03037c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/4hpro_LT"/>
@@ -86357,10 +86409,10 @@
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-      <species metaid="MAM03037m" sboTerm="SBO:0000247" id="MAM03037m" name="trans-4-hydroxy-L-proline" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H9NO3">
+      <species metaid="M_MAM03037m" sboTerm="SBO:0000247" id="M_MAM03037m" name="trans-4-hydroxy-L-proline" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H9NO3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03037m">
+            <rdf:Description rdf:about="#M_MAM03037m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/4hpro_LT"/>
@@ -86377,10 +86429,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03038c" sboTerm="SBO:0000247" id="MAM03038c" name="trans-5,6-dihydro-5,6-dihydroxy-7,12-dimethylbenz[a]anthracene" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H18O2">
+      <species metaid="M_MAM03038c" sboTerm="SBO:0000247" id="M_MAM03038c" name="trans-5,6-dihydro-5,6-dihydroxy-7,12-dimethylbenz[a]anthracene" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H18O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03038c">
+            <rdf:Description rdf:about="#M_MAM03038c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C19607"/>
@@ -86392,10 +86444,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03039e" sboTerm="SBO:0000247" id="MAM03039e" name="trehalose" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C12H22O11">
+      <species metaid="M_MAM03039e" sboTerm="SBO:0000247" id="M_MAM03039e" name="trehalose" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C12H22O11">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03039e">
+            <rdf:Description rdf:about="#M_MAM03039e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/tre"/>
@@ -86412,10 +86464,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03040c" sboTerm="SBO:0000247" id="MAM03040c" name="TRH" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C16H22N6O4">
+      <species metaid="M_MAM03040c" sboTerm="SBO:0000247" id="M_MAM03040c" name="TRH" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C16H22N6O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03040c">
+            <rdf:Description rdf:about="#M_MAM03040c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:35940"/>
@@ -86430,10 +86482,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03041c" sboTerm="SBO:0000247" id="MAM03041c" name="trichloroacetate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C2Cl3O2">
+      <species metaid="M_MAM03041c" sboTerm="SBO:0000247" id="M_MAM03041c" name="trichloroacetate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C2Cl3O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03041c">
+            <rdf:Description rdf:about="#M_MAM03041c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:30956"/>
@@ -86446,10 +86498,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03042c" sboTerm="SBO:0000247" id="MAM03042c" name="trichloroethanol glucuronide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C8H10Cl3O7">
+      <species metaid="M_MAM03042c" sboTerm="SBO:0000247" id="M_MAM03042c" name="trichloroethanol glucuronide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C8H10Cl3O7">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03042c">
+            <rdf:Description rdf:about="#M_MAM03042c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C14869"/>
@@ -86461,10 +86513,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03043c" sboTerm="SBO:0000247" id="MAM03043c" name="trichloroethanol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C2H3Cl3O">
+      <species metaid="M_MAM03043c" sboTerm="SBO:0000247" id="M_MAM03043c" name="trichloroethanol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C2H3Cl3O">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03043c">
+            <rdf:Description rdf:about="#M_MAM03043c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:28094"/>
@@ -86477,10 +86529,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03044c" sboTerm="SBO:0000247" id="MAM03044c" name="trichloroethene" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C2HCl3">
+      <species metaid="M_MAM03044c" sboTerm="SBO:0000247" id="M_MAM03044c" name="trichloroethene" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C2HCl3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03044c">
+            <rdf:Description rdf:about="#M_MAM03044c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:16602"/>
@@ -86493,10 +86545,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03044e" sboTerm="SBO:0000247" id="MAM03044e" name="trichloroethene" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C2HCl3">
+      <species metaid="M_MAM03044e" sboTerm="SBO:0000247" id="M_MAM03044e" name="trichloroethene" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C2HCl3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03044e">
+            <rdf:Description rdf:about="#M_MAM03044e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:16602"/>
@@ -86509,10 +86561,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03045c" sboTerm="SBO:0000247" id="MAM03045c" name="tricosanoic acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C23H45O2">
+      <species metaid="M_MAM03045c" sboTerm="SBO:0000247" id="M_MAM03045c" name="tricosanoic acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C23H45O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03045c">
+            <rdf:Description rdf:about="#M_MAM03045c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:42394"/>
@@ -86527,10 +86579,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03045l" sboTerm="SBO:0000247" id="MAM03045l" name="tricosanoic acid" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C23H45O2">
+      <species metaid="M_MAM03045l" sboTerm="SBO:0000247" id="M_MAM03045l" name="tricosanoic acid" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C23H45O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03045l">
+            <rdf:Description rdf:about="#M_MAM03045l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:42394"/>
@@ -86545,10 +86597,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03045r" sboTerm="SBO:0000247" id="MAM03045r" name="tricosanoic acid" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C23H45O2">
+      <species metaid="M_MAM03045r" sboTerm="SBO:0000247" id="M_MAM03045r" name="tricosanoic acid" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C23H45O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03045r">
+            <rdf:Description rdf:about="#M_MAM03045r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:42394"/>
@@ -86563,10 +86615,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03045e" sboTerm="SBO:0000247" id="MAM03045e" name="tricosanoic acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C23H45O2">
+      <species metaid="M_MAM03045e" sboTerm="SBO:0000247" id="M_MAM03045e" name="tricosanoic acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C23H45O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03045e">
+            <rdf:Description rdf:about="#M_MAM03045e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:42394"/>
@@ -86581,10 +86633,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03046c" sboTerm="SBO:0000247" id="MAM03046c" name="tricosanoylcarnitine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C30H59NO4">
+      <species metaid="M_MAM03046c" sboTerm="SBO:0000247" id="M_MAM03046c" name="tricosanoylcarnitine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C30H59NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03046c">
+            <rdf:Description rdf:about="#M_MAM03046c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M03046"/>
@@ -86594,10 +86646,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03046r" sboTerm="SBO:0000247" id="MAM03046r" name="tricosanoylcarnitine" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C30H59NO4">
+      <species metaid="M_MAM03046r" sboTerm="SBO:0000247" id="M_MAM03046r" name="tricosanoylcarnitine" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C30H59NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03046r">
+            <rdf:Description rdf:about="#M_MAM03046r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M03046"/>
@@ -86607,10 +86659,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03047c" sboTerm="SBO:0000247" id="MAM03047c" name="tricosanoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C44H76N7O17P3S">
+      <species metaid="M_MAM03047c" sboTerm="SBO:0000247" id="M_MAM03047c" name="tricosanoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C44H76N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03047c">
+            <rdf:Description rdf:about="#M_MAM03047c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:90118"/>
@@ -86622,10 +86674,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03047x" sboTerm="SBO:0000247" id="MAM03047x" name="tricosanoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C44H76N7O17P3S">
+      <species metaid="M_MAM03047x" sboTerm="SBO:0000247" id="M_MAM03047x" name="tricosanoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C44H76N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03047x">
+            <rdf:Description rdf:about="#M_MAM03047x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:90118"/>
@@ -86637,10 +86689,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03047r" sboTerm="SBO:0000247" id="MAM03047r" name="tricosanoyl-CoA" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C44H76N7O17P3S">
+      <species metaid="M_MAM03047r" sboTerm="SBO:0000247" id="M_MAM03047r" name="tricosanoyl-CoA" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C44H76N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03047r">
+            <rdf:Description rdf:about="#M_MAM03047r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:90118"/>
@@ -86652,10 +86704,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03048c" sboTerm="SBO:0000247" id="MAM03048c" name="tridecanoyl-[ACP]" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H45N2O8PRS">
+      <species metaid="M_MAM03048c" sboTerm="SBO:0000247" id="M_MAM03048c" name="tridecanoyl-[ACP]" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H45N2O8PRS">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03048c">
+            <rdf:Description rdf:about="#M_MAM03048c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M03048"/>
@@ -86665,10 +86717,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03049c" sboTerm="SBO:0000247" id="MAM03049c" name="tridecanoylcarnitine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H39NO4">
+      <species metaid="M_MAM03049c" sboTerm="SBO:0000247" id="M_MAM03049c" name="tridecanoylcarnitine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H39NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03049c">
+            <rdf:Description rdf:about="#M_MAM03049c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M03049"/>
@@ -86678,10 +86730,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03049m" sboTerm="SBO:0000247" id="MAM03049m" name="tridecanoylcarnitine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H39NO4">
+      <species metaid="M_MAM03049m" sboTerm="SBO:0000247" id="M_MAM03049m" name="tridecanoylcarnitine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H39NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03049m">
+            <rdf:Description rdf:about="#M_MAM03049m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M03049"/>
@@ -86691,10 +86743,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03049r" sboTerm="SBO:0000247" id="MAM03049r" name="tridecanoylcarnitine" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H39NO4">
+      <species metaid="M_MAM03049r" sboTerm="SBO:0000247" id="M_MAM03049r" name="tridecanoylcarnitine" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H39NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03049r">
+            <rdf:Description rdf:about="#M_MAM03049r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M03049"/>
@@ -86704,10 +86756,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03050c" sboTerm="SBO:0000247" id="MAM03050c" name="tridecanoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C34H56N7O17P3S">
+      <species metaid="M_MAM03050c" sboTerm="SBO:0000247" id="M_MAM03050c" name="tridecanoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C34H56N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03050c">
+            <rdf:Description rdf:about="#M_MAM03050c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/tridcoa"/>
@@ -86724,10 +86776,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03050m" sboTerm="SBO:0000247" id="MAM03050m" name="tridecanoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C34H56N7O17P3S">
+      <species metaid="M_MAM03050m" sboTerm="SBO:0000247" id="M_MAM03050m" name="tridecanoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C34H56N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03050m">
+            <rdf:Description rdf:about="#M_MAM03050m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/tridcoa"/>
@@ -86744,10 +86796,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03050r" sboTerm="SBO:0000247" id="MAM03050r" name="tridecanoyl-CoA" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C34H56N7O17P3S">
+      <species metaid="M_MAM03050r" sboTerm="SBO:0000247" id="M_MAM03050r" name="tridecanoyl-CoA" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C34H56N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03050r">
+            <rdf:Description rdf:about="#M_MAM03050r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/tridcoa"/>
@@ -86764,10 +86816,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03051c" sboTerm="SBO:0000247" id="MAM03051c" name="tridecylic acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C13H25O2">
+      <species metaid="M_MAM03051c" sboTerm="SBO:0000247" id="M_MAM03051c" name="tridecylic acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C13H25O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03051c">
+            <rdf:Description rdf:about="#M_MAM03051c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:45919"/>
@@ -86783,10 +86835,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03051l" sboTerm="SBO:0000247" id="MAM03051l" name="tridecylic acid" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C13H25O2">
+      <species metaid="M_MAM03051l" sboTerm="SBO:0000247" id="M_MAM03051l" name="tridecylic acid" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C13H25O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03051l">
+            <rdf:Description rdf:about="#M_MAM03051l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:45919"/>
@@ -86802,10 +86854,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03051r" sboTerm="SBO:0000247" id="MAM03051r" name="tridecylic acid" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C13H25O2">
+      <species metaid="M_MAM03051r" sboTerm="SBO:0000247" id="M_MAM03051r" name="tridecylic acid" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C13H25O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03051r">
+            <rdf:Description rdf:about="#M_MAM03051r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:45919"/>
@@ -86821,10 +86873,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03051e" sboTerm="SBO:0000247" id="MAM03051e" name="tridecylic acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C13H25O2">
+      <species metaid="M_MAM03051e" sboTerm="SBO:0000247" id="M_MAM03051e" name="tridecylic acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C13H25O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03051e">
+            <rdf:Description rdf:about="#M_MAM03051e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:45919"/>
@@ -86840,10 +86892,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03052c" sboTerm="SBO:0000247" id="MAM03052c" name="triiodothyronine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C15H12I3NO4">
+      <species metaid="M_MAM03052c" sboTerm="SBO:0000247" id="M_MAM03052c" name="triiodothyronine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C15H12I3NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03052c">
+            <rdf:Description rdf:about="#M_MAM03052c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/triodthy"/>
@@ -86861,10 +86913,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03052r" sboTerm="SBO:0000247" id="MAM03052r" name="triiodothyronine" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C15H12I3NO4">
+      <species metaid="M_MAM03052r" sboTerm="SBO:0000247" id="M_MAM03052r" name="triiodothyronine" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C15H12I3NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03052r">
+            <rdf:Description rdf:about="#M_MAM03052r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/triodthy"/>
@@ -86882,10 +86934,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03052e" sboTerm="SBO:0000247" id="MAM03052e" name="triiodothyronine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C15H12I3NO4">
+      <species metaid="M_MAM03052e" sboTerm="SBO:0000247" id="M_MAM03052e" name="triiodothyronine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C15H12I3NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03052e">
+            <rdf:Description rdf:about="#M_MAM03052e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/triodthy"/>
@@ -86903,10 +86955,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03053c" sboTerm="SBO:0000247" id="MAM03053c" name="trimethylamine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C3H10N">
+      <species metaid="M_MAM03053c" sboTerm="SBO:0000247" id="M_MAM03053c" name="trimethylamine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C3H10N">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03053c">
+            <rdf:Description rdf:about="#M_MAM03053c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:18139"/>
@@ -86919,10 +86971,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03054c" sboTerm="SBO:0000247" id="MAM03054c" name="trimethylamine-N-oxide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H9NO">
+      <species metaid="M_MAM03054c" sboTerm="SBO:0000247" id="M_MAM03054c" name="trimethylamine-N-oxide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H9NO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03054c">
+            <rdf:Description rdf:about="#M_MAM03054c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:15724"/>
@@ -86935,10 +86987,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03055c" sboTerm="SBO:0000247" id="MAM03055c" name="trioxilin A3" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H33O5">
+      <species metaid="M_MAM03055c" sboTerm="SBO:0000247" id="M_MAM03055c" name="trioxilin A3" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H33O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03055c">
+            <rdf:Description rdf:about="#M_MAM03055c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:15630"/>
@@ -86953,10 +87005,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03055x" sboTerm="SBO:0000247" id="MAM03055x" name="trioxilin A3" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H33O5">
+      <species metaid="M_MAM03055x" sboTerm="SBO:0000247" id="M_MAM03055x" name="trioxilin A3" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H33O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03055x">
+            <rdf:Description rdf:about="#M_MAM03055x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:15630"/>
@@ -86971,10 +87023,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03055r" sboTerm="SBO:0000247" id="MAM03055r" name="trioxilin A3" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H33O5">
+      <species metaid="M_MAM03055r" sboTerm="SBO:0000247" id="M_MAM03055r" name="trioxilin A3" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H33O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03055r">
+            <rdf:Description rdf:about="#M_MAM03055r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:15630"/>
@@ -86990,10 +87042,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03056c" sboTerm="SBO:0000247" id="MAM03056c" name="trioxilin B3" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H33O5">
+      <species metaid="M_MAM03056c" sboTerm="SBO:0000247" id="M_MAM03056c" name="trioxilin B3" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H33O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03056c">
+            <rdf:Description rdf:about="#M_MAM03056c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:78099"/>
@@ -87006,10 +87058,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03057c" sboTerm="SBO:0000247" id="MAM03057c" name="triphosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="HO10P3">
+      <species metaid="M_MAM03057c" sboTerm="SBO:0000247" id="M_MAM03057c" name="triphosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="HO10P3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03057c">
+            <rdf:Description rdf:about="#M_MAM03057c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pppi"/>
@@ -87025,10 +87077,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03057m" sboTerm="SBO:0000247" id="MAM03057m" name="triphosphate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="HO10P3">
+      <species metaid="M_MAM03057m" sboTerm="SBO:0000247" id="M_MAM03057m" name="triphosphate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="HO10P3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03057m">
+            <rdf:Description rdf:about="#M_MAM03057m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pppi"/>
@@ -87044,10 +87096,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03057n" sboTerm="SBO:0000247" id="MAM03057n" name="triphosphate" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="HO10P3">
+      <species metaid="M_MAM03057n" sboTerm="SBO:0000247" id="M_MAM03057n" name="triphosphate" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="HO10P3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03057n">
+            <rdf:Description rdf:about="#M_MAM03057n">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pppi"/>
@@ -87063,10 +87115,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03058c" sboTerm="SBO:0000247" id="MAM03058c" name="tRNA containing 5-aminomethyl-2-thiouridine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H6N3OSR">
+      <species metaid="M_MAM03058c" sboTerm="SBO:0000247" id="M_MAM03058c" name="tRNA containing 5-aminomethyl-2-thiouridine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H6N3OSR">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03058c">
+            <rdf:Description rdf:about="#M_MAM03058c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C11478"/>
@@ -87078,10 +87130,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03059c" sboTerm="SBO:0000247" id="MAM03059c" name="tRNA containing 5-methylaminomethyl-2-thiouridylate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H8N3OSR">
+      <species metaid="M_MAM03059c" sboTerm="SBO:0000247" id="M_MAM03059c" name="tRNA containing 5-methylaminomethyl-2-thiouridylate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H8N3OSR">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03059c">
+            <rdf:Description rdf:about="#M_MAM03059c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C04728"/>
@@ -87093,10 +87145,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03060c" sboTerm="SBO:0000247" id="MAM03060c" name="tRNA containing 6-isopentenyladenosine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H9R">
+      <species metaid="M_MAM03060c" sboTerm="SBO:0000247" id="M_MAM03060c" name="tRNA containing 6-isopentenyladenosine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H9R">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03060c">
+            <rdf:Description rdf:about="#M_MAM03060c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C04432"/>
@@ -87108,10 +87160,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03061c" sboTerm="SBO:0000247" id="MAM03061c" name="tRNA containing N2-methylguanine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H6N5OR">
+      <species metaid="M_MAM03061c" sboTerm="SBO:0000247" id="M_MAM03061c" name="tRNA containing N2-methylguanine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H6N5OR">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03061c">
+            <rdf:Description rdf:about="#M_MAM03061c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C04158"/>
@@ -87123,10 +87175,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03062c" sboTerm="SBO:0000247" id="MAM03062c" name="tRNA containing N7-methylguanine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C6H7N5OR">
+      <species metaid="M_MAM03062c" sboTerm="SBO:0000247" id="M_MAM03062c" name="tRNA containing N7-methylguanine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C6H7N5OR">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03062c">
+            <rdf:Description rdf:about="#M_MAM03062c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C04160"/>
@@ -87138,10 +87190,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03063c" sboTerm="SBO:0000247" id="MAM03063c" name="tRNA(ala)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="RH">
+      <species metaid="M_MAM03063c" sboTerm="SBO:0000247" id="M_MAM03063c" name="tRNA(ala)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="RH">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03063c">
+            <rdf:Description rdf:about="#M_MAM03063c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C01635"/>
@@ -87153,10 +87205,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03064c" sboTerm="SBO:0000247" id="MAM03064c" name="tRNA(arg)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="RH">
+      <species metaid="M_MAM03064c" sboTerm="SBO:0000247" id="M_MAM03064c" name="tRNA(arg)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="RH">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03064c">
+            <rdf:Description rdf:about="#M_MAM03064c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C01636"/>
@@ -87168,10 +87220,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03065c" sboTerm="SBO:0000247" id="MAM03065c" name="tRNA(asn)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="RH">
+      <species metaid="M_MAM03065c" sboTerm="SBO:0000247" id="M_MAM03065c" name="tRNA(asn)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="RH">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03065c">
+            <rdf:Description rdf:about="#M_MAM03065c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C01637"/>
@@ -87183,10 +87235,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03066c" sboTerm="SBO:0000247" id="MAM03066c" name="tRNA(asp)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="RH">
+      <species metaid="M_MAM03066c" sboTerm="SBO:0000247" id="M_MAM03066c" name="tRNA(asp)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="RH">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03066c">
+            <rdf:Description rdf:about="#M_MAM03066c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C01638"/>
@@ -87198,10 +87250,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03067c" sboTerm="SBO:0000247" id="MAM03067c" name="tRNA(cys)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="RH">
+      <species metaid="M_MAM03067c" sboTerm="SBO:0000247" id="M_MAM03067c" name="tRNA(cys)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="RH">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03067c">
+            <rdf:Description rdf:about="#M_MAM03067c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C01639"/>
@@ -87213,10 +87265,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03068c" sboTerm="SBO:0000247" id="MAM03068c" name="tRNA(gln)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="RH">
+      <species metaid="M_MAM03068c" sboTerm="SBO:0000247" id="M_MAM03068c" name="tRNA(gln)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="RH">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03068c">
+            <rdf:Description rdf:about="#M_MAM03068c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C01640"/>
@@ -87228,10 +87280,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03069c" sboTerm="SBO:0000247" id="MAM03069c" name="tRNA(glu)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="RH">
+      <species metaid="M_MAM03069c" sboTerm="SBO:0000247" id="M_MAM03069c" name="tRNA(glu)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="RH">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03069c">
+            <rdf:Description rdf:about="#M_MAM03069c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C01641"/>
@@ -87243,10 +87295,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03070c" sboTerm="SBO:0000247" id="MAM03070c" name="tRNA(gly)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="RH">
+      <species metaid="M_MAM03070c" sboTerm="SBO:0000247" id="M_MAM03070c" name="tRNA(gly)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="RH">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03070c">
+            <rdf:Description rdf:about="#M_MAM03070c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C01642"/>
@@ -87258,10 +87310,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03071c" sboTerm="SBO:0000247" id="MAM03071c" name="tRNA(his)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="RH">
+      <species metaid="M_MAM03071c" sboTerm="SBO:0000247" id="M_MAM03071c" name="tRNA(his)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="RH">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03071c">
+            <rdf:Description rdf:about="#M_MAM03071c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C01643"/>
@@ -87273,10 +87325,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03072c" sboTerm="SBO:0000247" id="MAM03072c" name="tRNA(ile)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="RH">
+      <species metaid="M_MAM03072c" sboTerm="SBO:0000247" id="M_MAM03072c" name="tRNA(ile)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="RH">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03072c">
+            <rdf:Description rdf:about="#M_MAM03072c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C01644"/>
@@ -87288,10 +87340,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03073c" sboTerm="SBO:0000247" id="MAM03073c" name="tRNA(leu)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="RH">
+      <species metaid="M_MAM03073c" sboTerm="SBO:0000247" id="M_MAM03073c" name="tRNA(leu)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="RH">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03073c">
+            <rdf:Description rdf:about="#M_MAM03073c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C01645"/>
@@ -87303,10 +87355,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03074c" sboTerm="SBO:0000247" id="MAM03074c" name="tRNA(lys)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="RH">
+      <species metaid="M_MAM03074c" sboTerm="SBO:0000247" id="M_MAM03074c" name="tRNA(lys)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="RH">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03074c">
+            <rdf:Description rdf:about="#M_MAM03074c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C01646"/>
@@ -87318,10 +87370,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03075c" sboTerm="SBO:0000247" id="MAM03075c" name="tRNA(met)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="RH">
+      <species metaid="M_MAM03075c" sboTerm="SBO:0000247" id="M_MAM03075c" name="tRNA(met)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="RH">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03075c">
+            <rdf:Description rdf:about="#M_MAM03075c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C01647"/>
@@ -87333,10 +87385,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03076c" sboTerm="SBO:0000247" id="MAM03076c" name="tRNA(phe)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="RH">
+      <species metaid="M_MAM03076c" sboTerm="SBO:0000247" id="M_MAM03076c" name="tRNA(phe)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="RH">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03076c">
+            <rdf:Description rdf:about="#M_MAM03076c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C01648"/>
@@ -87348,10 +87400,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03077c" sboTerm="SBO:0000247" id="MAM03077c" name="tRNA(pro)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="RH">
+      <species metaid="M_MAM03077c" sboTerm="SBO:0000247" id="M_MAM03077c" name="tRNA(pro)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="RH">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03077c">
+            <rdf:Description rdf:about="#M_MAM03077c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C01649"/>
@@ -87363,10 +87415,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03078c" sboTerm="SBO:0000247" id="MAM03078c" name="tRNA(ser)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="RH">
+      <species metaid="M_MAM03078c" sboTerm="SBO:0000247" id="M_MAM03078c" name="tRNA(ser)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="RH">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03078c">
+            <rdf:Description rdf:about="#M_MAM03078c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C01650"/>
@@ -87378,10 +87430,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03079c" sboTerm="SBO:0000247" id="MAM03079c" name="tRNA(thr)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="RH">
+      <species metaid="M_MAM03079c" sboTerm="SBO:0000247" id="M_MAM03079c" name="tRNA(thr)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="RH">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03079c">
+            <rdf:Description rdf:about="#M_MAM03079c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C01651"/>
@@ -87393,10 +87445,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03080c" sboTerm="SBO:0000247" id="MAM03080c" name="tRNA(trp)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="RH">
+      <species metaid="M_MAM03080c" sboTerm="SBO:0000247" id="M_MAM03080c" name="tRNA(trp)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="RH">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03080c">
+            <rdf:Description rdf:about="#M_MAM03080c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C01652"/>
@@ -87408,10 +87460,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03081c" sboTerm="SBO:0000247" id="MAM03081c" name="tRNA(tyr)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="RH">
+      <species metaid="M_MAM03081c" sboTerm="SBO:0000247" id="M_MAM03081c" name="tRNA(tyr)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="RH">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03081c">
+            <rdf:Description rdf:about="#M_MAM03081c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C00787"/>
@@ -87423,10 +87475,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03082c" sboTerm="SBO:0000247" id="MAM03082c" name="tRNA(val)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="RH">
+      <species metaid="M_MAM03082c" sboTerm="SBO:0000247" id="M_MAM03082c" name="tRNA(val)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="RH">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03082c">
+            <rdf:Description rdf:about="#M_MAM03082c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C01653"/>
@@ -87438,10 +87490,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03083c" sboTerm="SBO:0000247" id="MAM03083c" name="tRNA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="RH">
+      <species metaid="M_MAM03083c" sboTerm="SBO:0000247" id="M_MAM03083c" name="tRNA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="RH">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03083c">
+            <rdf:Description rdf:about="#M_MAM03083c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:17843"/>
@@ -87454,10 +87506,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03084c" sboTerm="SBO:0000247" id="MAM03084c" name="tRNA-guanine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H4N5OR">
+      <species metaid="M_MAM03084c" sboTerm="SBO:0000247" id="M_MAM03084c" name="tRNA-guanine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H4N5OR">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03084c">
+            <rdf:Description rdf:about="#M_MAM03084c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C01977"/>
@@ -87469,10 +87521,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03085c" sboTerm="SBO:0000247" id="MAM03085c" name="tRNA-pseudouridine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H10N2O6R2">
+      <species metaid="M_MAM03085c" sboTerm="SBO:0000247" id="M_MAM03085c" name="tRNA-pseudouridine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H10N2O6R2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03085c">
+            <rdf:Description rdf:about="#M_MAM03085c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C02764"/>
@@ -87484,10 +87536,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03086c" sboTerm="SBO:0000247" id="MAM03086c" name="tRNA-queuine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C12H14N5O3R">
+      <species metaid="M_MAM03086c" sboTerm="SBO:0000247" id="M_MAM03086c" name="tRNA-queuine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C12H14N5O3R">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03086c">
+            <rdf:Description rdf:about="#M_MAM03086c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C01978"/>
@@ -87499,10 +87551,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03087c" sboTerm="SBO:0000247" id="MAM03087c" name="tRNA-uridine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H10N2O6R2">
+      <species metaid="M_MAM03087c" sboTerm="SBO:0000247" id="M_MAM03087c" name="tRNA-uridine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H10N2O6R2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03087c">
+            <rdf:Description rdf:about="#M_MAM03087c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C00868"/>
@@ -87514,10 +87566,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03088c" sboTerm="SBO:0000247" id="MAM03088c" name="tryptamine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C10H13N2">
+      <species metaid="M_MAM03088c" sboTerm="SBO:0000247" id="M_MAM03088c" name="tryptamine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C10H13N2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03088c">
+            <rdf:Description rdf:about="#M_MAM03088c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/trypta"/>
@@ -87533,10 +87585,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03089c" sboTerm="SBO:0000247" id="MAM03089c" name="tryptophan" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C11H12N2O2">
+      <species metaid="M_MAM03089c" sboTerm="SBO:0000247" id="M_MAM03089c" name="tryptophan" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C11H12N2O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03089c">
+            <rdf:Description rdf:about="#M_MAM03089c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/trp__L"/>
@@ -87552,10 +87604,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03089l" sboTerm="SBO:0000247" id="MAM03089l" name="tryptophan" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C11H12N2O2">
+      <species metaid="M_MAM03089l" sboTerm="SBO:0000247" id="M_MAM03089l" name="tryptophan" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C11H12N2O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03089l">
+            <rdf:Description rdf:about="#M_MAM03089l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/trp__L"/>
@@ -87571,10 +87623,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03089e" sboTerm="SBO:0000247" id="MAM03089e" name="tryptophan" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C11H12N2O2">
+      <species metaid="M_MAM03089e" sboTerm="SBO:0000247" id="M_MAM03089e" name="tryptophan" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C11H12N2O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03089e">
+            <rdf:Description rdf:about="#M_MAM03089e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/trp__L"/>
@@ -87590,10 +87642,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03090c" sboTerm="SBO:0000247" id="MAM03090c" name="type I A glycolipid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C58H102N3O31RCO">
+      <species metaid="M_MAM03090c" sboTerm="SBO:0000247" id="M_MAM03090c" name="type I A glycolipid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C58H102N3O31RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03090c">
+            <rdf:Description rdf:about="#M_MAM03090c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/acgalfucgalacglcgalgluside_hs"/>
@@ -87606,10 +87658,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03090g" sboTerm="SBO:0000247" id="MAM03090g" name="type I A glycolipid" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C58H102N3O31RCO">
+      <species metaid="M_MAM03090g" sboTerm="SBO:0000247" id="M_MAM03090g" name="type I A glycolipid" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C58H102N3O31RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03090g">
+            <rdf:Description rdf:about="#M_MAM03090g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/acgalfucgalacglcgalgluside_hs"/>
@@ -87622,10 +87674,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03091c" sboTerm="SBO:0000247" id="MAM03091c" name="type I B glycolipid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C56H99N2O31RCO">
+      <species metaid="M_MAM03091c" sboTerm="SBO:0000247" id="M_MAM03091c" name="type I B glycolipid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C56H99N2O31RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03091c">
+            <rdf:Description rdf:about="#M_MAM03091c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/galfucgalacglcgalgluside_hs"/>
@@ -87639,10 +87691,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03091g" sboTerm="SBO:0000247" id="MAM03091g" name="type I B glycolipid" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C56H99N2O31RCO">
+      <species metaid="M_MAM03091g" sboTerm="SBO:0000247" id="M_MAM03091g" name="type I B glycolipid" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C56H99N2O31RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03091g">
+            <rdf:Description rdf:about="#M_MAM03091g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/galfucgalacglcgalgluside_hs"/>
@@ -87656,10 +87708,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03092g" sboTerm="SBO:0000247" id="MAM03092g" name="type I H glycolipid" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C50H89N2O26RCO">
+      <species metaid="M_MAM03092g" sboTerm="SBO:0000247" id="M_MAM03092g" name="type I H glycolipid" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C50H89N2O26RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03092g">
+            <rdf:Description rdf:about="#M_MAM03092g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/fucgalacglcgalgluside_hs"/>
@@ -87671,10 +87723,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03093c" sboTerm="SBO:0000247" id="MAM03093c" name="type II A antigen" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C59H102N3O32R">
+      <species metaid="M_MAM03093c" sboTerm="SBO:0000247" id="M_MAM03093c" name="type II A antigen" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C59H102N3O32R">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03093c">
+            <rdf:Description rdf:about="#M_MAM03093c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/G00054"/>
@@ -87687,10 +87739,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03095g" sboTerm="SBO:0000247" id="MAM03095g" name="type II H glycolipid" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C50H89N2O26RCO">
+      <species metaid="M_MAM03095g" sboTerm="SBO:0000247" id="M_MAM03095g" name="type II H glycolipid" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C50H89N2O26RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03095g">
+            <rdf:Description rdf:about="#M_MAM03095g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/fuc12gal14acglcgalgluside_hs"/>
@@ -87702,10 +87754,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03096c" sboTerm="SBO:0000247" id="MAM03096c" name="type III A glycolipid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C78H135N4O45RCO">
+      <species metaid="M_MAM03096c" sboTerm="SBO:0000247" id="M_MAM03096c" name="type III A glycolipid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C78H135N4O45RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03096c">
+            <rdf:Description rdf:about="#M_MAM03096c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/acgalfucgalacgalfuc12gal14acglcgalgluside_hs"/>
@@ -87718,10 +87770,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03096g" sboTerm="SBO:0000247" id="MAM03096g" name="type III A glycolipid" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C78H135N4O45RCO">
+      <species metaid="M_MAM03096g" sboTerm="SBO:0000247" id="M_MAM03096g" name="type III A glycolipid" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C78H135N4O45RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03096g">
+            <rdf:Description rdf:about="#M_MAM03096g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/acgalfucgalacgalfuc12gal14acglcgalgluside_hs"/>
@@ -87734,10 +87786,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03096e" sboTerm="SBO:0000247" id="MAM03096e" name="type III A glycolipid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C78H135N4O45RCO">
+      <species metaid="M_MAM03096e" sboTerm="SBO:0000247" id="M_MAM03096e" name="type III A glycolipid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C78H135N4O45RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03096e">
+            <rdf:Description rdf:about="#M_MAM03096e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/acgalfucgalacgalfuc12gal14acglcgalgluside_hs"/>
@@ -87750,10 +87802,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03098c" sboTerm="SBO:0000247" id="MAM03098c" name="type IIIAb" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C92H158N5O55RCO">
+      <species metaid="M_MAM03098c" sboTerm="SBO:0000247" id="M_MAM03098c" name="type IIIAb" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C92H158N5O55RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03098c">
+            <rdf:Description rdf:about="#M_MAM03098c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/acgalfucgalacgalfucgalacglcgal14acglcgalgluside_hs"/>
@@ -87766,10 +87818,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03098g" sboTerm="SBO:0000247" id="MAM03098g" name="type IIIAb" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C92H158N5O55RCO">
+      <species metaid="M_MAM03098g" sboTerm="SBO:0000247" id="M_MAM03098g" name="type IIIAb" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C92H158N5O55RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03098g">
+            <rdf:Description rdf:about="#M_MAM03098g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/acgalfucgalacgalfucgalacglcgal14acglcgalgluside_hs"/>
@@ -87782,10 +87834,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03098e" sboTerm="SBO:0000247" id="MAM03098e" name="type IIIAb" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C92H158N5O55RCO">
+      <species metaid="M_MAM03098e" sboTerm="SBO:0000247" id="M_MAM03098e" name="type IIIAb" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C92H158N5O55RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03098e">
+            <rdf:Description rdf:about="#M_MAM03098e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/acgalfucgalacgalfucgalacglcgal14acglcgalgluside_hs"/>
@@ -87798,10 +87850,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03099c" sboTerm="SBO:0000247" id="MAM03099c" name="tyramine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C8H12NO">
+      <species metaid="M_MAM03099c" sboTerm="SBO:0000247" id="M_MAM03099c" name="tyramine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C8H12NO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03099c">
+            <rdf:Description rdf:about="#M_MAM03099c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/tym"/>
@@ -87817,10 +87869,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03100c" sboTerm="SBO:0000247" id="MAM03100c" name="tyramine-O-sulfate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H11NO4S">
+      <species metaid="M_MAM03100c" sboTerm="SBO:0000247" id="M_MAM03100c" name="tyramine-O-sulfate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H11NO4S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03100c">
+            <rdf:Description rdf:about="#M_MAM03100c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/tymsf"/>
@@ -87834,10 +87886,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03100e" sboTerm="SBO:0000247" id="MAM03100e" name="tyramine-O-sulfate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H11NO4S">
+      <species metaid="M_MAM03100e" sboTerm="SBO:0000247" id="M_MAM03100e" name="tyramine-O-sulfate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H11NO4S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03100e">
+            <rdf:Description rdf:about="#M_MAM03100e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/tymsf"/>
@@ -87851,10 +87903,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03101c" sboTerm="SBO:0000247" id="MAM03101c" name="tyrosine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H11NO3">
+      <species metaid="M_MAM03101c" sboTerm="SBO:0000247" id="M_MAM03101c" name="tyrosine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H11NO3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03101c">
+            <rdf:Description rdf:about="#M_MAM03101c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/tyr__L"/>
@@ -87870,10 +87922,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03101l" sboTerm="SBO:0000247" id="MAM03101l" name="tyrosine" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H11NO3">
+      <species metaid="M_MAM03101l" sboTerm="SBO:0000247" id="M_MAM03101l" name="tyrosine" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H11NO3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03101l">
+            <rdf:Description rdf:about="#M_MAM03101l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/tyr__L"/>
@@ -87889,10 +87941,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03101m" sboTerm="SBO:0000247" id="MAM03101m" name="tyrosine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H11NO3">
+      <species metaid="M_MAM03101m" sboTerm="SBO:0000247" id="M_MAM03101m" name="tyrosine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H11NO3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03101m">
+            <rdf:Description rdf:about="#M_MAM03101m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/tyr__L"/>
@@ -87908,10 +87960,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03101e" sboTerm="SBO:0000247" id="MAM03101e" name="tyrosine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H11NO3">
+      <species metaid="M_MAM03101e" sboTerm="SBO:0000247" id="M_MAM03101e" name="tyrosine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H11NO3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03101e">
+            <rdf:Description rdf:about="#M_MAM03101e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/tyr__L"/>
@@ -87927,10 +87979,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03102m" sboTerm="SBO:0000247" id="MAM03102m" name="ubiquinol" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C59H92O4">
+      <species metaid="M_MAM03102m" sboTerm="SBO:0000247" id="M_MAM03102m" name="ubiquinol" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C59H92O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03102m">
+            <rdf:Description rdf:about="#M_MAM03102m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/q10h2"/>
@@ -87946,10 +87998,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03103m" sboTerm="SBO:0000247" id="MAM03103m" name="ubiquinone" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C59H90O4">
+      <species metaid="M_MAM03103m" sboTerm="SBO:0000247" id="M_MAM03103m" name="ubiquinone" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C59H90O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03103m">
+            <rdf:Description rdf:about="#M_MAM03103m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/q10"/>
@@ -87965,10 +88017,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03104c" sboTerm="SBO:0000247" id="MAM03104c" name="ubiquitin C terminal thiolester" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="RCOSR">
+      <species metaid="M_MAM03104c" sboTerm="SBO:0000247" id="M_MAM03104c" name="ubiquitin C terminal thiolester" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="RCOSR">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03104c">
+            <rdf:Description rdf:about="#M_MAM03104c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C04090"/>
@@ -87980,10 +88032,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03105c" sboTerm="SBO:0000247" id="MAM03105c" name="ubiquitin" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="RCO2">
+      <species metaid="M_MAM03105c" sboTerm="SBO:0000247" id="M_MAM03105c" name="ubiquitin" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="RCO2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03105c">
+            <rdf:Description rdf:about="#M_MAM03105c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C00496"/>
@@ -87995,10 +88047,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03106c" sboTerm="SBO:0000247" id="MAM03106c" name="UDP" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C9H11N2O12P2">
+      <species metaid="M_MAM03106c" sboTerm="SBO:0000247" id="M_MAM03106c" name="UDP" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C9H11N2O12P2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03106c">
+            <rdf:Description rdf:about="#M_MAM03106c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/udp"/>
@@ -88014,10 +88066,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03106g" sboTerm="SBO:0000247" id="MAM03106g" name="UDP" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C9H11N2O12P2">
+      <species metaid="M_MAM03106g" sboTerm="SBO:0000247" id="M_MAM03106g" name="UDP" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C9H11N2O12P2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03106g">
+            <rdf:Description rdf:about="#M_MAM03106g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/udp"/>
@@ -88033,10 +88085,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03106l" sboTerm="SBO:0000247" id="MAM03106l" name="UDP" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C9H11N2O12P2">
+      <species metaid="M_MAM03106l" sboTerm="SBO:0000247" id="M_MAM03106l" name="UDP" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C9H11N2O12P2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03106l">
+            <rdf:Description rdf:about="#M_MAM03106l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/udp"/>
@@ -88052,10 +88104,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03106m" sboTerm="SBO:0000247" id="MAM03106m" name="UDP" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C9H11N2O12P2">
+      <species metaid="M_MAM03106m" sboTerm="SBO:0000247" id="M_MAM03106m" name="UDP" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C9H11N2O12P2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03106m">
+            <rdf:Description rdf:about="#M_MAM03106m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/udp"/>
@@ -88071,10 +88123,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03106n" sboTerm="SBO:0000247" id="MAM03106n" name="UDP" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C9H11N2O12P2">
+      <species metaid="M_MAM03106n" sboTerm="SBO:0000247" id="M_MAM03106n" name="UDP" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C9H11N2O12P2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03106n">
+            <rdf:Description rdf:about="#M_MAM03106n">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/udp"/>
@@ -88090,10 +88142,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03106r" sboTerm="SBO:0000247" id="MAM03106r" name="UDP" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C9H11N2O12P2">
+      <species metaid="M_MAM03106r" sboTerm="SBO:0000247" id="M_MAM03106r" name="UDP" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C9H11N2O12P2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03106r">
+            <rdf:Description rdf:about="#M_MAM03106r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/udp"/>
@@ -88109,10 +88161,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03106e" sboTerm="SBO:0000247" id="MAM03106e" name="UDP" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C9H11N2O12P2">
+      <species metaid="M_MAM03106e" sboTerm="SBO:0000247" id="M_MAM03106e" name="UDP" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C9H11N2O12P2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03106e">
+            <rdf:Description rdf:about="#M_MAM03106e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/udp"/>
@@ -88128,10 +88180,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM03107c" sboTerm="SBO:0000247" id="MAM03107c" name="UDP-galactose" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C15H22N2O17P2">
+      <species metaid="M_MAM03107c" sboTerm="SBO:0000247" id="M_MAM03107c" name="UDP-galactose" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C15H22N2O17P2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03107c">
+            <rdf:Description rdf:about="#M_MAM03107c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/udpgal"/>
@@ -88147,10 +88199,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03107g" sboTerm="SBO:0000247" id="MAM03107g" name="UDP-galactose" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C15H22N2O17P2">
+      <species metaid="M_MAM03107g" sboTerm="SBO:0000247" id="M_MAM03107g" name="UDP-galactose" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C15H22N2O17P2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03107g">
+            <rdf:Description rdf:about="#M_MAM03107g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/udpgal"/>
@@ -88166,10 +88218,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03107r" sboTerm="SBO:0000247" id="MAM03107r" name="UDP-galactose" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C15H22N2O17P2">
+      <species metaid="M_MAM03107r" sboTerm="SBO:0000247" id="M_MAM03107r" name="UDP-galactose" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C15H22N2O17P2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03107r">
+            <rdf:Description rdf:about="#M_MAM03107r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/udpgal"/>
@@ -88185,10 +88237,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03108c" sboTerm="SBO:0000247" id="MAM03108c" name="UDP-glucose" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C15H22N2O17P2">
+      <species metaid="M_MAM03108c" sboTerm="SBO:0000247" id="M_MAM03108c" name="UDP-glucose" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C15H22N2O17P2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03108c">
+            <rdf:Description rdf:about="#M_MAM03108c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/udpg"/>
@@ -88203,10 +88255,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03108g" sboTerm="SBO:0000247" id="MAM03108g" name="UDP-glucose" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C15H22N2O17P2">
+      <species metaid="M_MAM03108g" sboTerm="SBO:0000247" id="M_MAM03108g" name="UDP-glucose" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C15H22N2O17P2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03108g">
+            <rdf:Description rdf:about="#M_MAM03108g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/udpg"/>
@@ -88221,10 +88273,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03108r" sboTerm="SBO:0000247" id="MAM03108r" name="UDP-glucose" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C15H22N2O17P2">
+      <species metaid="M_MAM03108r" sboTerm="SBO:0000247" id="M_MAM03108r" name="UDP-glucose" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C15H22N2O17P2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03108r">
+            <rdf:Description rdf:about="#M_MAM03108r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/udpg"/>
@@ -88239,10 +88291,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03109c" sboTerm="SBO:0000247" id="MAM03109c" name="UDP-glucuronate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C15H19N2O18P2">
+      <species metaid="M_MAM03109c" sboTerm="SBO:0000247" id="M_MAM03109c" name="UDP-glucuronate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C15H19N2O18P2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03109c">
+            <rdf:Description rdf:about="#M_MAM03109c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/udpglcur"/>
@@ -88258,10 +88310,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03109g" sboTerm="SBO:0000247" id="MAM03109g" name="UDP-glucuronate" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C15H19N2O18P2">
+      <species metaid="M_MAM03109g" sboTerm="SBO:0000247" id="M_MAM03109g" name="UDP-glucuronate" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C15H19N2O18P2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03109g">
+            <rdf:Description rdf:about="#M_MAM03109g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/udpglcur"/>
@@ -88277,10 +88329,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03109r" sboTerm="SBO:0000247" id="MAM03109r" name="UDP-glucuronate" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C15H19N2O18P2">
+      <species metaid="M_MAM03109r" sboTerm="SBO:0000247" id="M_MAM03109r" name="UDP-glucuronate" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C15H19N2O18P2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03109r">
+            <rdf:Description rdf:about="#M_MAM03109r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/udpglcur"/>
@@ -88296,10 +88348,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03110c" sboTerm="SBO:0000247" id="MAM03110c" name="UDP-N-acetyl-D-galactosamine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C17H25N3O17P2">
+      <species metaid="M_MAM03110c" sboTerm="SBO:0000247" id="M_MAM03110c" name="UDP-N-acetyl-D-galactosamine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C17H25N3O17P2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03110c">
+            <rdf:Description rdf:about="#M_MAM03110c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/udpacgal"/>
@@ -88314,10 +88366,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03110g" sboTerm="SBO:0000247" id="MAM03110g" name="UDP-N-acetyl-D-galactosamine" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C17H25N3O17P2">
+      <species metaid="M_MAM03110g" sboTerm="SBO:0000247" id="M_MAM03110g" name="UDP-N-acetyl-D-galactosamine" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C17H25N3O17P2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03110g">
+            <rdf:Description rdf:about="#M_MAM03110g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/udpacgal"/>
@@ -88332,10 +88384,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03110l" sboTerm="SBO:0000247" id="MAM03110l" name="UDP-N-acetyl-D-galactosamine" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C17H25N3O17P2">
+      <species metaid="M_MAM03110l" sboTerm="SBO:0000247" id="M_MAM03110l" name="UDP-N-acetyl-D-galactosamine" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C17H25N3O17P2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03110l">
+            <rdf:Description rdf:about="#M_MAM03110l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/udpacgal"/>
@@ -88350,10 +88402,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03110r" sboTerm="SBO:0000247" id="MAM03110r" name="UDP-N-acetyl-D-galactosamine" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C17H25N3O17P2">
+      <species metaid="M_MAM03110r" sboTerm="SBO:0000247" id="M_MAM03110r" name="UDP-N-acetyl-D-galactosamine" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C17H25N3O17P2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03110r">
+            <rdf:Description rdf:about="#M_MAM03110r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/udpacgal"/>
@@ -88368,10 +88420,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03111c" sboTerm="SBO:0000247" id="MAM03111c" name="UDP-N-acetylglucosamine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C17H25N3O17P2">
+      <species metaid="M_MAM03111c" sboTerm="SBO:0000247" id="M_MAM03111c" name="UDP-N-acetylglucosamine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C17H25N3O17P2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03111c">
+            <rdf:Description rdf:about="#M_MAM03111c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/uacgam"/>
@@ -88386,10 +88438,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03111g" sboTerm="SBO:0000247" id="MAM03111g" name="UDP-N-acetylglucosamine" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C17H25N3O17P2">
+      <species metaid="M_MAM03111g" sboTerm="SBO:0000247" id="M_MAM03111g" name="UDP-N-acetylglucosamine" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C17H25N3O17P2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03111g">
+            <rdf:Description rdf:about="#M_MAM03111g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/uacgam"/>
@@ -88404,10 +88456,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03111r" sboTerm="SBO:0000247" id="MAM03111r" name="UDP-N-acetylglucosamine" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C17H25N3O17P2">
+      <species metaid="M_MAM03111r" sboTerm="SBO:0000247" id="M_MAM03111r" name="UDP-N-acetylglucosamine" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C17H25N3O17P2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03111r">
+            <rdf:Description rdf:about="#M_MAM03111r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/uacgam"/>
@@ -88422,10 +88474,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03112c" sboTerm="SBO:0000247" id="MAM03112c" name="UDP-xylose" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C14H20N2O16P2">
+      <species metaid="M_MAM03112c" sboTerm="SBO:0000247" id="M_MAM03112c" name="UDP-xylose" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C14H20N2O16P2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03112c">
+            <rdf:Description rdf:about="#M_MAM03112c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/udpxyl"/>
@@ -88440,10 +88492,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03112g" sboTerm="SBO:0000247" id="MAM03112g" name="UDP-xylose" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C14H20N2O16P2">
+      <species metaid="M_MAM03112g" sboTerm="SBO:0000247" id="M_MAM03112g" name="UDP-xylose" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C14H20N2O16P2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03112g">
+            <rdf:Description rdf:about="#M_MAM03112g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/udpxyl"/>
@@ -88458,10 +88510,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03112r" sboTerm="SBO:0000247" id="MAM03112r" name="UDP-xylose" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C14H20N2O16P2">
+      <species metaid="M_MAM03112r" sboTerm="SBO:0000247" id="M_MAM03112r" name="UDP-xylose" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C14H20N2O16P2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03112r">
+            <rdf:Description rdf:about="#M_MAM03112r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/udpxyl"/>
@@ -88476,10 +88528,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03113c" sboTerm="SBO:0000247" id="MAM03113c" name="umbelliferone" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H6O3">
+      <species metaid="M_MAM03113c" sboTerm="SBO:0000247" id="M_MAM03113c" name="umbelliferone" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H6O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03113c">
+            <rdf:Description rdf:about="#M_MAM03113c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hcoumarin"/>
@@ -88494,10 +88546,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03113e" sboTerm="SBO:0000247" id="MAM03113e" name="umbelliferone" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H6O3">
+      <species metaid="M_MAM03113e" sboTerm="SBO:0000247" id="M_MAM03113e" name="umbelliferone" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H6O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03113e">
+            <rdf:Description rdf:about="#M_MAM03113e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hcoumarin"/>
@@ -88512,10 +88564,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03114c" sboTerm="SBO:0000247" id="MAM03114c" name="UMP" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C9H11N2O9P">
+      <species metaid="M_MAM03114c" sboTerm="SBO:0000247" id="M_MAM03114c" name="UMP" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C9H11N2O9P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03114c">
+            <rdf:Description rdf:about="#M_MAM03114c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ump"/>
@@ -88530,10 +88582,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03114g" sboTerm="SBO:0000247" id="MAM03114g" name="UMP" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C9H11N2O9P">
+      <species metaid="M_MAM03114g" sboTerm="SBO:0000247" id="M_MAM03114g" name="UMP" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C9H11N2O9P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03114g">
+            <rdf:Description rdf:about="#M_MAM03114g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ump"/>
@@ -88548,10 +88600,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03114l" sboTerm="SBO:0000247" id="MAM03114l" name="UMP" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C9H11N2O9P">
+      <species metaid="M_MAM03114l" sboTerm="SBO:0000247" id="M_MAM03114l" name="UMP" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C9H11N2O9P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03114l">
+            <rdf:Description rdf:about="#M_MAM03114l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ump"/>
@@ -88566,10 +88618,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03114m" sboTerm="SBO:0000247" id="MAM03114m" name="UMP" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C9H11N2O9P">
+      <species metaid="M_MAM03114m" sboTerm="SBO:0000247" id="M_MAM03114m" name="UMP" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C9H11N2O9P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03114m">
+            <rdf:Description rdf:about="#M_MAM03114m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ump"/>
@@ -88584,10 +88636,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03114n" sboTerm="SBO:0000247" id="MAM03114n" name="UMP" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C9H11N2O9P">
+      <species metaid="M_MAM03114n" sboTerm="SBO:0000247" id="M_MAM03114n" name="UMP" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C9H11N2O9P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03114n">
+            <rdf:Description rdf:about="#M_MAM03114n">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ump"/>
@@ -88602,10 +88654,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03114r" sboTerm="SBO:0000247" id="MAM03114r" name="UMP" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C9H11N2O9P">
+      <species metaid="M_MAM03114r" sboTerm="SBO:0000247" id="M_MAM03114r" name="UMP" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C9H11N2O9P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03114r">
+            <rdf:Description rdf:about="#M_MAM03114r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ump"/>
@@ -88620,10 +88672,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03114e" sboTerm="SBO:0000247" id="MAM03114e" name="UMP" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C9H11N2O9P">
+      <species metaid="M_MAM03114e" sboTerm="SBO:0000247" id="M_MAM03114e" name="UMP" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C9H11N2O9P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03114e">
+            <rdf:Description rdf:about="#M_MAM03114e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ump"/>
@@ -88638,10 +88690,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03115c" sboTerm="SBO:0000247" id="MAM03115c" name="undecanoyl-[ACP]" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C22H41N2O8PRS">
+      <species metaid="M_MAM03115c" sboTerm="SBO:0000247" id="M_MAM03115c" name="undecanoyl-[ACP]" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C22H41N2O8PRS">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03115c">
+            <rdf:Description rdf:about="#M_MAM03115c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M03115"/>
@@ -88651,10 +88703,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03116c" sboTerm="SBO:0000247" id="MAM03116c" name="undecanoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C32H52N7O17P3S">
+      <species metaid="M_MAM03116c" sboTerm="SBO:0000247" id="M_MAM03116c" name="undecanoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C32H52N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03116c">
+            <rdf:Description rdf:about="#M_MAM03116c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/undcoa"/>
@@ -88671,10 +88723,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03116m" sboTerm="SBO:0000247" id="MAM03116m" name="undecanoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C32H52N7O17P3S">
+      <species metaid="M_MAM03116m" sboTerm="SBO:0000247" id="M_MAM03116m" name="undecanoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C32H52N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03116m">
+            <rdf:Description rdf:about="#M_MAM03116m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/undcoa"/>
@@ -88691,10 +88743,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03117c" sboTerm="SBO:0000247" id="MAM03117c" name="undecylic acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C11H21O2">
+      <species metaid="M_MAM03117c" sboTerm="SBO:0000247" id="M_MAM03117c" name="undecylic acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C11H21O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03117c">
+            <rdf:Description rdf:about="#M_MAM03117c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:32368"/>
@@ -88710,10 +88762,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03117e" sboTerm="SBO:0000247" id="MAM03117e" name="undecylic acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C11H21O2">
+      <species metaid="M_MAM03117e" sboTerm="SBO:0000247" id="M_MAM03117e" name="undecylic acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C11H21O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03117e">
+            <rdf:Description rdf:about="#M_MAM03117e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:32368"/>
@@ -88729,10 +88781,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03118c" sboTerm="SBO:0000247" id="MAM03118c" name="uracil" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H4N2O2">
+      <species metaid="M_MAM03118c" sboTerm="SBO:0000247" id="M_MAM03118c" name="uracil" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H4N2O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03118c">
+            <rdf:Description rdf:about="#M_MAM03118c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ura"/>
@@ -88748,10 +88800,10 @@
           </rdf:RDF>
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       </species>
-      <species metaid="MAM03118e" sboTerm="SBO:0000247" id="MAM03118e" name="uracil" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H4N2O2">
+      <species metaid="M_MAM03118e" sboTerm="SBO:0000247" id="M_MAM03118e" name="uracil" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H4N2O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03118e">
+            <rdf:Description rdf:about="#M_MAM03118e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ura"/>
@@ -88767,10 +88819,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03119c" sboTerm="SBO:0000247" id="MAM03119c" name="urate radical" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H3N4O3">
+      <species metaid="M_MAM03119c" sboTerm="SBO:0000247" id="M_MAM03119c" name="urate radical" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H3N4O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03119c">
+            <rdf:Description rdf:about="#M_MAM03119c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM162033"/>
@@ -88781,10 +88833,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03120c" sboTerm="SBO:0000247" id="MAM03120c" name="urate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H4N4O3">
+      <species metaid="M_MAM03120c" sboTerm="SBO:0000247" id="M_MAM03120c" name="urate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H4N4O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03120c">
+            <rdf:Description rdf:about="#M_MAM03120c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/urate"/>
@@ -88801,10 +88853,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03120x" sboTerm="SBO:0000247" id="MAM03120x" name="urate" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H4N4O3">
+      <species metaid="M_MAM03120x" sboTerm="SBO:0000247" id="M_MAM03120x" name="urate" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H4N4O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03120x">
+            <rdf:Description rdf:about="#M_MAM03120x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/urate"/>
@@ -88821,10 +88873,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03120e" sboTerm="SBO:0000247" id="MAM03120e" name="urate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H4N4O3">
+      <species metaid="M_MAM03120e" sboTerm="SBO:0000247" id="M_MAM03120e" name="urate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H4N4O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03120e">
+            <rdf:Description rdf:about="#M_MAM03120e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/urate"/>
@@ -88841,10 +88893,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03121c" sboTerm="SBO:0000247" id="MAM03121c" name="urea" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="CH4N2O">
+      <species metaid="M_MAM03121c" sboTerm="SBO:0000247" id="M_MAM03121c" name="urea" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="CH4N2O">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03121c">
+            <rdf:Description rdf:about="#M_MAM03121c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/urea"/>
@@ -88861,10 +88913,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03121m" sboTerm="SBO:0000247" id="MAM03121m" name="urea" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="CH4N2O">
+      <species metaid="M_MAM03121m" sboTerm="SBO:0000247" id="M_MAM03121m" name="urea" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="CH4N2O">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03121m">
+            <rdf:Description rdf:about="#M_MAM03121m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/urea"/>
@@ -88881,10 +88933,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03121e" sboTerm="SBO:0000247" id="MAM03121e" name="urea" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="CH4N2O">
+      <species metaid="M_MAM03121e" sboTerm="SBO:0000247" id="M_MAM03121e" name="urea" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="CH4N2O">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03121e">
+            <rdf:Description rdf:about="#M_MAM03121e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/urea"/>
@@ -88901,10 +88953,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03123c" sboTerm="SBO:0000247" id="MAM03123c" name="uridine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H12N2O6">
+      <species metaid="M_MAM03123c" sboTerm="SBO:0000247" id="M_MAM03123c" name="uridine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H12N2O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03123c">
+            <rdf:Description rdf:about="#M_MAM03123c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/uri"/>
@@ -88920,10 +88972,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03123l" sboTerm="SBO:0000247" id="MAM03123l" name="uridine" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H12N2O6">
+      <species metaid="M_MAM03123l" sboTerm="SBO:0000247" id="M_MAM03123l" name="uridine" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H12N2O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03123l">
+            <rdf:Description rdf:about="#M_MAM03123l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/uri"/>
@@ -88939,10 +88991,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03123m" sboTerm="SBO:0000247" id="MAM03123m" name="uridine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H12N2O6">
+      <species metaid="M_MAM03123m" sboTerm="SBO:0000247" id="M_MAM03123m" name="uridine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H12N2O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03123m">
+            <rdf:Description rdf:about="#M_MAM03123m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/uri"/>
@@ -88958,10 +89010,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03123n" sboTerm="SBO:0000247" id="MAM03123n" name="uridine" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H12N2O6">
+      <species metaid="M_MAM03123n" sboTerm="SBO:0000247" id="M_MAM03123n" name="uridine" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H12N2O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03123n">
+            <rdf:Description rdf:about="#M_MAM03123n">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/uri"/>
@@ -88977,10 +89029,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03123e" sboTerm="SBO:0000247" id="MAM03123e" name="uridine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H12N2O6">
+      <species metaid="M_MAM03123e" sboTerm="SBO:0000247" id="M_MAM03123e" name="uridine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H12N2O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03123e">
+            <rdf:Description rdf:about="#M_MAM03123e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/uri"/>
@@ -88996,10 +89048,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03124c" sboTerm="SBO:0000247" id="MAM03124c" name="urocanate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H5N2O2">
+      <species metaid="M_MAM03124c" sboTerm="SBO:0000247" id="M_MAM03124c" name="urocanate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H5N2O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03124c">
+            <rdf:Description rdf:about="#M_MAM03124c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/urcan"/>
@@ -89015,10 +89067,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03125c" sboTerm="SBO:0000247" id="MAM03125c" name="uroporphyrin I" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-8" fbc:chemicalFormula="C40H30N4O16">
+      <species metaid="M_MAM03125c" sboTerm="SBO:0000247" id="M_MAM03125c" name="uroporphyrin I" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-8" fbc:chemicalFormula="C40H30N4O16">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03125c">
+            <rdf:Description rdf:about="#M_MAM03125c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:27484"/>
@@ -89032,10 +89084,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03126c" sboTerm="SBO:0000247" id="MAM03126c" name="uroporphyrin III" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-8" fbc:chemicalFormula="C40H30N4O16">
+      <species metaid="M_MAM03126c" sboTerm="SBO:0000247" id="M_MAM03126c" name="uroporphyrin III" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-8" fbc:chemicalFormula="C40H30N4O16">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03126c">
+            <rdf:Description rdf:about="#M_MAM03126c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:15436"/>
@@ -89049,10 +89101,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03127c" sboTerm="SBO:0000247" id="MAM03127c" name="uroporphyrinogen I" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-8" fbc:chemicalFormula="C40H36N4O16">
+      <species metaid="M_MAM03127c" sboTerm="SBO:0000247" id="M_MAM03127c" name="uroporphyrinogen I" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-8" fbc:chemicalFormula="C40H36N4O16">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03127c">
+            <rdf:Description rdf:about="#M_MAM03127c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:28766"/>
@@ -89067,10 +89119,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM03128c" sboTerm="SBO:0000247" id="MAM03128c" name="uroporphyrinogen III" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-8" fbc:chemicalFormula="C40H36N4O16">
+      <species metaid="M_MAM03128c" sboTerm="SBO:0000247" id="M_MAM03128c" name="uroporphyrinogen III" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-8" fbc:chemicalFormula="C40H36N4O16">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03128c">
+            <rdf:Description rdf:about="#M_MAM03128c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/uppg3"/>
@@ -89086,10 +89138,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03129c" sboTerm="SBO:0000247" id="MAM03129c" name="ursodeoxycholate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H39O4">
+      <species metaid="M_MAM03129c" sboTerm="SBO:0000247" id="M_MAM03129c" name="ursodeoxycholate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H39O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03129c">
+            <rdf:Description rdf:about="#M_MAM03129c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:9907"/>
@@ -89101,10 +89153,10 @@
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         </annotation>
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-      <species metaid="MAM03129e" sboTerm="SBO:0000247" id="MAM03129e" name="ursodeoxycholate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H39O4">
+      <species metaid="M_MAM03129e" sboTerm="SBO:0000247" id="M_MAM03129e" name="ursodeoxycholate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H39O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03129e">
+            <rdf:Description rdf:about="#M_MAM03129e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:9907"/>
@@ -89116,10 +89168,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03130c" sboTerm="SBO:0000247" id="MAM03130c" name="UTP" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C9H11N2O15P3">
+      <species metaid="M_MAM03130c" sboTerm="SBO:0000247" id="M_MAM03130c" name="UTP" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C9H11N2O15P3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03130c">
+            <rdf:Description rdf:about="#M_MAM03130c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/utp"/>
@@ -89135,10 +89187,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03130m" sboTerm="SBO:0000247" id="MAM03130m" name="UTP" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C9H11N2O15P3">
+      <species metaid="M_MAM03130m" sboTerm="SBO:0000247" id="M_MAM03130m" name="UTP" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C9H11N2O15P3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03130m">
+            <rdf:Description rdf:about="#M_MAM03130m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/utp"/>
@@ -89154,10 +89206,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03130n" sboTerm="SBO:0000247" id="MAM03130n" name="UTP" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C9H11N2O15P3">
+      <species metaid="M_MAM03130n" sboTerm="SBO:0000247" id="M_MAM03130n" name="UTP" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C9H11N2O15P3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03130n">
+            <rdf:Description rdf:about="#M_MAM03130n">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/utp"/>
@@ -89173,10 +89225,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03130e" sboTerm="SBO:0000247" id="MAM03130e" name="UTP" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C9H11N2O15P3">
+      <species metaid="M_MAM03130e" sboTerm="SBO:0000247" id="M_MAM03130e" name="UTP" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C9H11N2O15P3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03130e">
+            <rdf:Description rdf:about="#M_MAM03130e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/utp"/>
@@ -89192,10 +89244,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03131c" sboTerm="SBO:0000247" id="MAM03131c" name="V3(NeuAc)2-Gb5Cer" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C70H119N4O41R">
+      <species metaid="M_MAM03131c" sboTerm="SBO:0000247" id="M_MAM03131c" name="V3(NeuAc)2-Gb5Cer" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C70H119N4O41R">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03131c">
+            <rdf:Description rdf:about="#M_MAM03131c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/G00100"/>
@@ -89207,10 +89259,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03131e" sboTerm="SBO:0000247" id="MAM03131e" name="V3(NeuAc)2-Gb5Cer" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C70H119N4O41R">
+      <species metaid="M_MAM03131e" sboTerm="SBO:0000247" id="M_MAM03131e" name="V3(NeuAc)2-Gb5Cer" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C70H119N4O41R">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03131e">
+            <rdf:Description rdf:about="#M_MAM03131e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/G00100"/>
@@ -89222,10 +89274,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03132c" sboTerm="SBO:0000247" id="MAM03132c" name="V3Fuc,III3Fuc-nLc6Cer" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C71H122N3O41R">
+      <species metaid="M_MAM03132c" sboTerm="SBO:0000247" id="M_MAM03132c" name="V3Fuc,III3Fuc-nLc6Cer" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C71H122N3O41R">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03132c">
+            <rdf:Description rdf:about="#M_MAM03132c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/G00090"/>
@@ -89237,10 +89289,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03133c" sboTerm="SBO:0000247" id="MAM03133c" name="V3Fuc-nLc6Cer" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C64H112N3O36RCO">
+      <species metaid="M_MAM03133c" sboTerm="SBO:0000247" id="M_MAM03133c" name="V3Fuc-nLc6Cer" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C64H112N3O36RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03133c">
+            <rdf:Description rdf:about="#M_MAM03133c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/fuc132galacglcgal14acglcgalgluside_hs"/>
@@ -89253,10 +89305,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03133g" sboTerm="SBO:0000247" id="MAM03133g" name="V3Fuc-nLc6Cer" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C64H112N3O36RCO">
+      <species metaid="M_MAM03133g" sboTerm="SBO:0000247" id="M_MAM03133g" name="V3Fuc-nLc6Cer" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C64H112N3O36RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03133g">
+            <rdf:Description rdf:about="#M_MAM03133g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/fuc132galacglcgal14acglcgalgluside_hs"/>
@@ -89269,10 +89321,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03134c" sboTerm="SBO:0000247" id="MAM03134c" name="valeric acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C5H9O2">
+      <species metaid="M_MAM03134c" sboTerm="SBO:0000247" id="M_MAM03134c" name="valeric acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C5H9O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03134c">
+            <rdf:Description rdf:about="#M_MAM03134c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:17418"/>
@@ -89288,10 +89340,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03134e" sboTerm="SBO:0000247" id="MAM03134e" name="valeric acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C5H9O2">
+      <species metaid="M_MAM03134e" sboTerm="SBO:0000247" id="M_MAM03134e" name="valeric acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C5H9O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03134e">
+            <rdf:Description rdf:about="#M_MAM03134e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:17418"/>
@@ -89307,10 +89359,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03135c" sboTerm="SBO:0000247" id="MAM03135c" name="valine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H11NO2">
+      <species metaid="M_MAM03135c" sboTerm="SBO:0000247" id="M_MAM03135c" name="valine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H11NO2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03135c">
+            <rdf:Description rdf:about="#M_MAM03135c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/val__L"/>
@@ -89326,10 +89378,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03135l" sboTerm="SBO:0000247" id="MAM03135l" name="valine" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H11NO2">
+      <species metaid="M_MAM03135l" sboTerm="SBO:0000247" id="M_MAM03135l" name="valine" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H11NO2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03135l">
+            <rdf:Description rdf:about="#M_MAM03135l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/val__L"/>
@@ -89345,10 +89397,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03135m" sboTerm="SBO:0000247" id="MAM03135m" name="valine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H11NO2">
+      <species metaid="M_MAM03135m" sboTerm="SBO:0000247" id="M_MAM03135m" name="valine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H11NO2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03135m">
+            <rdf:Description rdf:about="#M_MAM03135m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/val__L"/>
@@ -89364,10 +89416,10 @@
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-      <species metaid="MAM03135e" sboTerm="SBO:0000247" id="MAM03135e" name="valine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H11NO2">
+      <species metaid="M_MAM03135e" sboTerm="SBO:0000247" id="M_MAM03135e" name="valine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H11NO2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03135e">
+            <rdf:Description rdf:about="#M_MAM03135e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/val__L"/>
@@ -89383,10 +89435,10 @@
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-      <species metaid="MAM03136c" sboTerm="SBO:0000247" id="MAM03136c" name="vanillylmandelate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C9H9O5">
+      <species metaid="M_MAM03136c" sboTerm="SBO:0000247" id="M_MAM03136c" name="vanillylmandelate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C9H9O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03136c">
+            <rdf:Description rdf:about="#M_MAM03136c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/3mox4hoxm"/>
@@ -89403,10 +89455,10 @@
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-      <species metaid="MAM03137c" sboTerm="SBO:0000247" id="MAM03137c" name="VI2Fuc-nLc6" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C64H112N3O36RCO">
+      <species metaid="M_MAM03137c" sboTerm="SBO:0000247" id="M_MAM03137c" name="VI2Fuc-nLc6" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C64H112N3O36RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03137c">
+            <rdf:Description rdf:about="#M_MAM03137c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/fucgalacglcgal14acglcgalgluside_hs"/>
@@ -89419,10 +89471,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM03137g" sboTerm="SBO:0000247" id="MAM03137g" name="VI2Fuc-nLc6" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C64H112N3O36RCO">
+      <species metaid="M_MAM03137g" sboTerm="SBO:0000247" id="M_MAM03137g" name="VI2Fuc-nLc6" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C64H112N3O36RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03137g">
+            <rdf:Description rdf:about="#M_MAM03137g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/fucgalacglcgal14acglcgalgluside_hs"/>
@@ -89435,10 +89487,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM03138c" sboTerm="SBO:0000247" id="MAM03138c" name="VI3NeuAc-nLc6Cer" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C69H118N4O40RCO">
+      <species metaid="M_MAM03138c" sboTerm="SBO:0000247" id="M_MAM03138c" name="VI3NeuAc-nLc6Cer" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C69H118N4O40RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03138c">
+            <rdf:Description rdf:about="#M_MAM03138c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/acngalacglcgal14acglcgalgluside_hs"/>
@@ -89451,10 +89503,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03138g" sboTerm="SBO:0000247" id="MAM03138g" name="VI3NeuAc-nLc6Cer" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C69H118N4O40RCO">
+      <species metaid="M_MAM03138g" sboTerm="SBO:0000247" id="M_MAM03138g" name="VI3NeuAc-nLc6Cer" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C69H118N4O40RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03138g">
+            <rdf:Description rdf:about="#M_MAM03138g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/acngalacglcgal14acglcgalgluside_hs"/>
@@ -89467,10 +89519,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03138e" sboTerm="SBO:0000247" id="MAM03138e" name="VI3NeuAc-nLc6Cer" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C69H118N4O40RCO">
+      <species metaid="M_MAM03138e" sboTerm="SBO:0000247" id="M_MAM03138e" name="VI3NeuAc-nLc6Cer" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C69H118N4O40RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03138e">
+            <rdf:Description rdf:about="#M_MAM03138e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/acngalacglcgal14acglcgalgluside_hs"/>
@@ -89483,10 +89535,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03141c" sboTerm="SBO:0000247" id="MAM03141c" name="vitamin D2" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C28H44O">
+      <species metaid="M_MAM03141c" sboTerm="SBO:0000247" id="M_MAM03141c" name="vitamin D2" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C28H44O">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03141c">
+            <rdf:Description rdf:about="#M_MAM03141c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/vitd2"/>
@@ -89502,10 +89554,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03141m" sboTerm="SBO:0000247" id="MAM03141m" name="vitamin D2" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C28H44O">
+      <species metaid="M_MAM03141m" sboTerm="SBO:0000247" id="M_MAM03141m" name="vitamin D2" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C28H44O">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03141m">
+            <rdf:Description rdf:about="#M_MAM03141m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/vitd2"/>
@@ -89521,10 +89573,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03141e" sboTerm="SBO:0000247" id="MAM03141e" name="vitamin D2" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C28H44O">
+      <species metaid="M_MAM03141e" sboTerm="SBO:0000247" id="M_MAM03141e" name="vitamin D2" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C28H44O">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03141e">
+            <rdf:Description rdf:about="#M_MAM03141e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/vitd2"/>
@@ -89540,10 +89592,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03142c" sboTerm="SBO:0000247" id="MAM03142c" name="vitamin D3" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H44O">
+      <species metaid="M_MAM03142c" sboTerm="SBO:0000247" id="M_MAM03142c" name="vitamin D3" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H44O">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03142c">
+            <rdf:Description rdf:about="#M_MAM03142c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/vitd3"/>
@@ -89561,10 +89613,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03142m" sboTerm="SBO:0000247" id="MAM03142m" name="vitamin D3" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H44O">
+      <species metaid="M_MAM03142m" sboTerm="SBO:0000247" id="M_MAM03142m" name="vitamin D3" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H44O">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03142m">
+            <rdf:Description rdf:about="#M_MAM03142m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/vitd3"/>
@@ -89582,10 +89634,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03142e" sboTerm="SBO:0000247" id="MAM03142e" name="vitamin D3" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H44O">
+      <species metaid="M_MAM03142e" sboTerm="SBO:0000247" id="M_MAM03142e" name="vitamin D3" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H44O">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03142e">
+            <rdf:Description rdf:about="#M_MAM03142e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/vitd3"/>
@@ -89603,10 +89655,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03144c" sboTerm="SBO:0000247" id="MAM03144c" name="vitamin K epoxide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C11H7O3R">
+      <species metaid="M_MAM03144c" sboTerm="SBO:0000247" id="M_MAM03144c" name="vitamin K epoxide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C11H7O3R">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03144c">
+            <rdf:Description rdf:about="#M_MAM03144c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C16711"/>
@@ -89618,10 +89670,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03145c" sboTerm="SBO:0000247" id="MAM03145c" name="vitamin K" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C11H7O2R">
+      <species metaid="M_MAM03145c" sboTerm="SBO:0000247" id="M_MAM03145c" name="vitamin K" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C11H7O2R">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03145c">
+            <rdf:Description rdf:about="#M_MAM03145c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:28384"/>
@@ -89634,10 +89686,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03146l" sboTerm="SBO:0000247" id="MAM03146l" name="VLDL remnant" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C136286H232084N13476O38613P3271S174R7267">
+      <species metaid="M_MAM03146l" sboTerm="SBO:0000247" id="M_MAM03146l" name="VLDL remnant" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C136286H232084N13476O38613P3271S174R7267">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03146l">
+            <rdf:Description rdf:about="#M_MAM03146l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M03146"/>
@@ -89647,10 +89699,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03146e" sboTerm="SBO:0000247" id="MAM03146e" name="VLDL remnant" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C136286H232084N13476O38613P3271S174R7267">
+      <species metaid="M_MAM03146e" sboTerm="SBO:0000247" id="M_MAM03146e" name="VLDL remnant" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C136286H232084N13476O38613P3271S174R7267">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03146e">
+            <rdf:Description rdf:about="#M_MAM03146e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M03146"/>
@@ -89660,10 +89712,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03147r" sboTerm="SBO:0000247" id="MAM03147r" name="VLDL" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C198596H284009N13476O100923P3271S174R38422">
+      <species metaid="M_MAM03147r" sboTerm="SBO:0000247" id="M_MAM03147r" name="VLDL" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C198596H284009N13476O100923P3271S174R38422">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03147r">
+            <rdf:Description rdf:about="#M_MAM03147r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM88829"/>
@@ -89674,10 +89726,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03147e" sboTerm="SBO:0000247" id="MAM03147e" name="VLDL" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C198596H284009N13476O100923P3271S174R38422">
+      <species metaid="M_MAM03147e" sboTerm="SBO:0000247" id="M_MAM03147e" name="VLDL" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C198596H284009N13476O100923P3271S174R38422">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03147e">
+            <rdf:Description rdf:about="#M_MAM03147e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM88829"/>
@@ -89688,10 +89740,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03148c" sboTerm="SBO:0000247" id="MAM03148c" name="xanthine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H4N4O2">
+      <species metaid="M_MAM03148c" sboTerm="SBO:0000247" id="M_MAM03148c" name="xanthine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H4N4O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03148c">
+            <rdf:Description rdf:about="#M_MAM03148c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/xan"/>
@@ -89708,10 +89760,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03148x" sboTerm="SBO:0000247" id="MAM03148x" name="xanthine" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H4N4O2">
+      <species metaid="M_MAM03148x" sboTerm="SBO:0000247" id="M_MAM03148x" name="xanthine" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H4N4O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03148x">
+            <rdf:Description rdf:about="#M_MAM03148x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/xan"/>
@@ -89728,10 +89780,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03149c" sboTerm="SBO:0000247" id="MAM03149c" name="xanthosine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H12N4O6">
+      <species metaid="M_MAM03149c" sboTerm="SBO:0000247" id="M_MAM03149c" name="xanthosine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H12N4O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03149c">
+            <rdf:Description rdf:about="#M_MAM03149c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/xtsn"/>
@@ -89748,10 +89800,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03150c" sboTerm="SBO:0000247" id="MAM03150c" name="xanthosine-5-phosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C10H11N4O9P">
+      <species metaid="M_MAM03150c" sboTerm="SBO:0000247" id="M_MAM03150c" name="xanthosine-5-phosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C10H11N4O9P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03150c">
+            <rdf:Description rdf:about="#M_MAM03150c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/xmp"/>
@@ -89766,10 +89818,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03151c" sboTerm="SBO:0000247" id="MAM03151c" name="xanthurenate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H6NO4">
+      <species metaid="M_MAM03151c" sboTerm="SBO:0000247" id="M_MAM03151c" name="xanthurenate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H6NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03151c">
+            <rdf:Description rdf:about="#M_MAM03151c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:217069"/>
@@ -89784,10 +89836,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03151e" sboTerm="SBO:0000247" id="MAM03151e" name="xanthurenate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H6NO4">
+      <species metaid="M_MAM03151e" sboTerm="SBO:0000247" id="M_MAM03151e" name="xanthurenate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H6NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03151e">
+            <rdf:Description rdf:about="#M_MAM03151e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:217069"/>
@@ -89802,10 +89854,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03152c" sboTerm="SBO:0000247" id="MAM03152c" name="xanthurenate-8-O-beta-D-glucoside" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C16H16NO9">
+      <species metaid="M_MAM03152c" sboTerm="SBO:0000247" id="M_MAM03152c" name="xanthurenate-8-O-beta-D-glucoside" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C16H16NO9">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03152c">
+            <rdf:Description rdf:about="#M_MAM03152c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM89165"/>
@@ -89817,10 +89869,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03153c" sboTerm="SBO:0000247" id="MAM03153c" name="ximenic acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C26H49O2">
+      <species metaid="M_MAM03153c" sboTerm="SBO:0000247" id="M_MAM03153c" name="ximenic acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C26H49O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03153c">
+            <rdf:Description rdf:about="#M_MAM03153c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/LMFA01030095"/>
@@ -89833,10 +89885,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03153l" sboTerm="SBO:0000247" id="MAM03153l" name="ximenic acid" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C26H49O2">
+      <species metaid="M_MAM03153l" sboTerm="SBO:0000247" id="M_MAM03153l" name="ximenic acid" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C26H49O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03153l">
+            <rdf:Description rdf:about="#M_MAM03153l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/LMFA01030095"/>
@@ -89849,10 +89901,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03153r" sboTerm="SBO:0000247" id="MAM03153r" name="ximenic acid" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C26H49O2">
+      <species metaid="M_MAM03153r" sboTerm="SBO:0000247" id="M_MAM03153r" name="ximenic acid" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C26H49O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03153r">
+            <rdf:Description rdf:about="#M_MAM03153r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/LMFA01030095"/>
@@ -89865,10 +89917,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03153e" sboTerm="SBO:0000247" id="MAM03153e" name="ximenic acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C26H49O2">
+      <species metaid="M_MAM03153e" sboTerm="SBO:0000247" id="M_MAM03153e" name="ximenic acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C26H49O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03153e">
+            <rdf:Description rdf:about="#M_MAM03153e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/LMFA01030095"/>
@@ -89881,10 +89933,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03154c" sboTerm="SBO:0000247" id="MAM03154c" name="XTP" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C10H11N4O15P3">
+      <species metaid="M_MAM03154c" sboTerm="SBO:0000247" id="M_MAM03154c" name="XTP" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C10H11N4O15P3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03154c">
+            <rdf:Description rdf:about="#M_MAM03154c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/xtp"/>
@@ -89900,10 +89952,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03154e" sboTerm="SBO:0000247" id="MAM03154e" name="XTP" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C10H11N4O15P3">
+      <species metaid="M_MAM03154e" sboTerm="SBO:0000247" id="M_MAM03154e" name="XTP" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C10H11N4O15P3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03154e">
+            <rdf:Description rdf:about="#M_MAM03154e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/xtp"/>
@@ -89919,10 +89971,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03155c" sboTerm="SBO:0000247" id="MAM03155c" name="xylitol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H12O5">
+      <species metaid="M_MAM03155c" sboTerm="SBO:0000247" id="M_MAM03155c" name="xylitol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H12O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03155c">
+            <rdf:Description rdf:about="#M_MAM03155c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/xylt"/>
@@ -89938,10 +89990,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03155e" sboTerm="SBO:0000247" id="MAM03155e" name="xylitol" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H12O5">
+      <species metaid="M_MAM03155e" sboTerm="SBO:0000247" id="M_MAM03155e" name="xylitol" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H12O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03155e">
+            <rdf:Description rdf:about="#M_MAM03155e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/xylt"/>
@@ -89957,10 +90009,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03156g" sboTerm="SBO:0000247" id="MAM03156g" name="Xyl-L-Ser-[protein]" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H9O4X">
+      <species metaid="M_MAM03156g" sboTerm="SBO:0000247" id="M_MAM03156g" name="Xyl-L-Ser-[protein]" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H9O4X">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03156g">
+            <rdf:Description rdf:about="#M_MAM03156g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/xser"/>
@@ -89974,10 +90026,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03156r" sboTerm="SBO:0000247" id="MAM03156r" name="Xyl-L-Ser-[protein]" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H9O4X">
+      <species metaid="M_MAM03156r" sboTerm="SBO:0000247" id="M_MAM03156r" name="Xyl-L-Ser-[protein]" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H9O4X">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03156r">
+            <rdf:Description rdf:about="#M_MAM03156r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/xser"/>
@@ -89991,10 +90043,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03157c" sboTerm="SBO:0000247" id="MAM03157c" name="zinc" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="Zn">
+      <species metaid="M_MAM03157c" sboTerm="SBO:0000247" id="M_MAM03157c" name="zinc" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="Zn">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03157c">
+            <rdf:Description rdf:about="#M_MAM03157c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:29105"/>
@@ -90009,10 +90061,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03157g" sboTerm="SBO:0000247" id="MAM03157g" name="zinc" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="Zn">
+      <species metaid="M_MAM03157g" sboTerm="SBO:0000247" id="M_MAM03157g" name="zinc" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="Zn">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03157g">
+            <rdf:Description rdf:about="#M_MAM03157g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:29105"/>
@@ -90027,10 +90079,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03157r" sboTerm="SBO:0000247" id="MAM03157r" name="zinc" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="Zn">
+      <species metaid="M_MAM03157r" sboTerm="SBO:0000247" id="M_MAM03157r" name="zinc" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="Zn">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03157r">
+            <rdf:Description rdf:about="#M_MAM03157r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:29105"/>
@@ -90045,10 +90097,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03157e" sboTerm="SBO:0000247" id="MAM03157e" name="zinc" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="Zn">
+      <species metaid="M_MAM03157e" sboTerm="SBO:0000247" id="M_MAM03157e" name="zinc" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="Zn">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03157e">
+            <rdf:Description rdf:about="#M_MAM03157e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:29105"/>
@@ -90063,10 +90115,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03161c" sboTerm="SBO:0000247" id="MAM03161c" name="glycogen" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H10O5">
+      <species metaid="M_MAM03161c" sboTerm="SBO:0000247" id="M_MAM03161c" name="glycogen" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H10O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03161c">
+            <rdf:Description rdf:about="#M_MAM03161c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:28087"/>
@@ -90079,10 +90131,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03161e" sboTerm="SBO:0000247" id="MAM03161e" name="glycogen" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H10O5">
+      <species metaid="M_MAM03161e" sboTerm="SBO:0000247" id="M_MAM03161e" name="glycogen" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H10O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03161e">
+            <rdf:Description rdf:about="#M_MAM03161e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:28087"/>
@@ -90095,10 +90147,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03162c" sboTerm="SBO:0000247" id="MAM03162c" name="5,6-dihydroxyindole" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H7NO2">
+      <species metaid="M_MAM03162c" sboTerm="SBO:0000247" id="M_MAM03162c" name="5,6-dihydroxyindole" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H7NO2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03162c">
+            <rdf:Description rdf:about="#M_MAM03162c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:27404"/>
@@ -90111,10 +90163,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03163c" sboTerm="SBO:0000247" id="MAM03163c" name="indole-5,6-quinone" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H5NO2">
+      <species metaid="M_MAM03163c" sboTerm="SBO:0000247" id="M_MAM03163c" name="indole-5,6-quinone" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H5NO2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03163c">
+            <rdf:Description rdf:about="#M_MAM03163c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ind56qn"/>
@@ -90129,10 +90181,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03164c" sboTerm="SBO:0000247" id="MAM03164c" name="D-alanyl-D-alanine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H12N2O3">
+      <species metaid="M_MAM03164c" sboTerm="SBO:0000247" id="M_MAM03164c" name="D-alanyl-D-alanine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H12N2O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03164c">
+            <rdf:Description rdf:about="#M_MAM03164c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/alaala"/>
@@ -90149,10 +90201,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03165c" sboTerm="SBO:0000247" id="MAM03165c" name="sedoheptulose" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H14O7">
+      <species metaid="M_MAM03165c" sboTerm="SBO:0000247" id="M_MAM03165c" name="sedoheptulose" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H14O7">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03165c">
+            <rdf:Description rdf:about="#M_MAM03165c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:16802"/>
@@ -90164,10 +90216,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03166c" sboTerm="SBO:0000247" id="MAM03166c" name="sedoheptulose-1-phosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C7H13O10P">
+      <species metaid="M_MAM03166c" sboTerm="SBO:0000247" id="M_MAM03166c" name="sedoheptulose-1-phosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C7H13O10P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03166c">
+            <rdf:Description rdf:about="#M_MAM03166c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:9082"/>
@@ -90180,10 +90232,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03167c" sboTerm="SBO:0000247" id="MAM03167c" name="5-Phosphonooxy-L-lysine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H14N2O6P">
+      <species metaid="M_MAM03167c" sboTerm="SBO:0000247" id="M_MAM03167c" name="5-Phosphonooxy-L-lysine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H14N2O6P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03167c">
+            <rdf:Description rdf:about="#M_MAM03167c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:16752"/>
@@ -90197,10 +90249,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03168m" sboTerm="SBO:0000247" id="MAM03168m" name="3-oxopropionyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C24H34N7O18P3S">
+      <species metaid="M_MAM03168m" sboTerm="SBO:0000247" id="M_MAM03168m" name="3-oxopropionyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C24H34N7O18P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03168m">
+            <rdf:Description rdf:about="#M_MAM03168m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C05989"/>
@@ -90212,10 +90264,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03169c" sboTerm="SBO:0000247" id="MAM03169c" name="insulin-(SS)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C256H379N65O77S6">
+      <species metaid="M_MAM03169c" sboTerm="SBO:0000247" id="M_MAM03169c" name="insulin-(SS)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C256H379N65O77S6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03169c">
+            <rdf:Description rdf:about="#M_MAM03169c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C00723"/>
@@ -90227,10 +90279,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03170c" sboTerm="SBO:0000247" id="MAM03170c" name="Insulin-(SH)2" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C256H381N65O77S6">
+      <species metaid="M_MAM03170c" sboTerm="SBO:0000247" id="M_MAM03170c" name="Insulin-(SH)2" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C256H381N65O77S6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03170c">
+            <rdf:Description rdf:about="#M_MAM03170c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C02288"/>
@@ -90242,10 +90294,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01602c" sboTerm="SBO:0000247" id="MAM01602c" name="cofactors and vitamins" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="X">
+      <species metaid="M_MAM01602c" sboTerm="SBO:0000247" id="M_MAM01602c" name="cofactors and vitamins" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="X">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01602c">
+            <rdf:Description rdf:about="#M_MAM01602c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M01602"/>
@@ -90255,10 +90307,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03139c" sboTerm="SBO:0000247" id="MAM03139c" name="vitamin A derivatives" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="X">
+      <species metaid="M_MAM03139c" sboTerm="SBO:0000247" id="M_MAM03139c" name="vitamin A derivatives" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="X">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03139c">
+            <rdf:Description rdf:about="#M_MAM03139c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M03139"/>
@@ -90268,10 +90320,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03140c" sboTerm="SBO:0000247" id="MAM03140c" name="vitamin D derivatives" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="X">
+      <species metaid="M_MAM03140c" sboTerm="SBO:0000247" id="M_MAM03140c" name="vitamin D derivatives" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="X">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03140c">
+            <rdf:Description rdf:about="#M_MAM03140c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M03140"/>
@@ -90281,10 +90333,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03143c" sboTerm="SBO:0000247" id="MAM03143c" name="vitamin E derivatives" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="X">
+      <species metaid="M_MAM03143c" sboTerm="SBO:0000247" id="M_MAM03143c" name="vitamin E derivatives" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="X">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03143c">
+            <rdf:Description rdf:about="#M_MAM03143c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M03143"/>
@@ -90294,10 +90346,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01004m" sboTerm="SBO:0000247" id="MAM01004m" name="4-hydroxyphenyllactate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C9H9O4">
+      <species metaid="M_MAM01004m" sboTerm="SBO:0000247" id="M_MAM01004m" name="4-hydroxyphenyllactate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C9H9O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01004m">
+            <rdf:Description rdf:about="#M_MAM01004m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/34hpl"/>
@@ -90313,10 +90365,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03226m" sboTerm="SBO:0000247" id="MAM03226m" name="(S)-3-Hydroxyisobutyryl Coenzyme A" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C25H38N7O18P3S">
+      <species metaid="M_MAM03226m" sboTerm="SBO:0000247" id="M_MAM03226m" name="(S)-3-Hydroxyisobutyryl Coenzyme A" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C25H38N7O18P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03226m">
+            <rdf:Description rdf:about="#M_MAM03226m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/3hibutcoa"/>
@@ -90330,10 +90382,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00799c" sboTerm="SBO:0000247" id="MAM00799c" name="3-hydroxypropionyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C24H36N7O18P3S">
+      <species metaid="M_MAM00799c" sboTerm="SBO:0000247" id="M_MAM00799c" name="3-hydroxypropionyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C24H36N7O18P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00799c">
+            <rdf:Description rdf:about="#M_MAM00799c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/3hpcoa"/>
@@ -90348,10 +90400,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02142c" sboTerm="SBO:0000247" id="MAM02142c" name="hydracrylate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C3H5O3">
+      <species metaid="M_MAM02142c" sboTerm="SBO:0000247" id="M_MAM02142c" name="hydracrylate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C3H5O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02142c">
+            <rdf:Description rdf:about="#M_MAM02142c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/3hpp"/>
@@ -90367,10 +90419,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00900c" sboTerm="SBO:0000247" id="MAM00900c" name="3-oxopropanoate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C3H3O3">
+      <species metaid="M_MAM00900c" sboTerm="SBO:0000247" id="M_MAM00900c" name="3-oxopropanoate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C3H3O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00900c">
+            <rdf:Description rdf:about="#M_MAM00900c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/msa"/>
@@ -90385,10 +90437,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03200l" sboTerm="SBO:0000247" id="MAM03200l" name="3-Adenosine Monophosphate" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C10H12N5O7P">
+      <species metaid="M_MAM03200l" sboTerm="SBO:0000247" id="M_MAM03200l" name="3-Adenosine Monophosphate" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C10H12N5O7P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03200l">
+            <rdf:Description rdf:about="#M_MAM03200l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/3amp"/>
@@ -90400,10 +90452,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00982m" sboTerm="SBO:0000247" id="MAM00982m" name="4-coumaroyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C30H38N7O18P3S1">
+      <species metaid="M_MAM00982m" sboTerm="SBO:0000247" id="M_MAM00982m" name="4-coumaroyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C30H38N7O18P3S1">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00982m">
+            <rdf:Description rdf:about="#M_MAM00982m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/coucoa"/>
@@ -90418,10 +90470,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00996m" sboTerm="SBO:0000247" id="MAM00996m" name="4-hydroxybenzoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C28H36N7O18P3S">
+      <species metaid="M_MAM00996m" sboTerm="SBO:0000247" id="M_MAM00996m" name="4-hydroxybenzoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C28H36N7O18P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00996m">
+            <rdf:Description rdf:about="#M_MAM00996m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/4hbzcoa"/>
@@ -90434,10 +90486,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02182r" sboTerm="SBO:0000247" id="MAM02182r" name="isocaproic-aldehyde" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H12O">
+      <species metaid="M_MAM02182r" sboTerm="SBO:0000247" id="M_MAM02182r" name="isocaproic-aldehyde" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H12O">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02182r">
+            <rdf:Description rdf:about="#M_MAM02182r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/4mptnl"/>
@@ -90454,10 +90506,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01102m" sboTerm="SBO:0000247" id="MAM01102m" name="5-hydroxyindoleacetaldehyde" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H9NO2">
+      <species metaid="M_MAM01102m" sboTerm="SBO:0000247" id="M_MAM01102m" name="5-hydroxyindoleacetaldehyde" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H9NO2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01102m">
+            <rdf:Description rdf:about="#M_MAM01102m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/5hoxindact"/>
@@ -90474,10 +90526,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01103m" sboTerm="SBO:0000247" id="MAM01103m" name="5-hydroxyindoleacetate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H8NO3">
+      <species metaid="M_MAM01103m" sboTerm="SBO:0000247" id="M_MAM01103m" name="5-hydroxyindoleacetate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H8NO3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01103m">
+            <rdf:Description rdf:about="#M_MAM01103m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/5hoxindoa"/>
@@ -90494,10 +90546,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02805r" sboTerm="SBO:0000247" id="MAM02805r" name="provitamin D3" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H44O">
+      <species metaid="M_MAM02805r" sboTerm="SBO:0000247" id="M_MAM02805r" name="provitamin D3" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H44O">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02805r">
+            <rdf:Description rdf:about="#M_MAM02805r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/7dhchsterol"/>
@@ -90516,10 +90568,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03586c" sboTerm="SBO:0000247" id="MAM03586c" name="Galactosyl Glucosyl Ceramide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C30H56NO12RCO">
+      <species metaid="M_MAM03586c" sboTerm="SBO:0000247" id="M_MAM03586c" name="Galactosyl Glucosyl Ceramide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C30H56NO12RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03586c">
+            <rdf:Description rdf:about="#M_MAM03586c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/galgluside_hs"/>
@@ -90531,10 +90583,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03586g" sboTerm="SBO:0000247" id="MAM03586g" name="Galactosyl Glucosyl Ceramide" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C30H56NO12RCO">
+      <species metaid="M_MAM03586g" sboTerm="SBO:0000247" id="M_MAM03586g" name="Galactosyl Glucosyl Ceramide" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C30H56NO12RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03586g">
+            <rdf:Description rdf:about="#M_MAM03586g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/galgluside_hs"/>
@@ -90546,10 +90598,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01253x" sboTerm="SBO:0000247" id="MAM01253x" name="acetoacetate" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C4H5O3">
+      <species metaid="M_MAM01253x" sboTerm="SBO:0000247" id="M_MAM01253x" name="acetoacetate" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C4H5O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01253x">
+            <rdf:Description rdf:about="#M_MAM01253x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/acac"/>
@@ -90566,10 +90618,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01288m" sboTerm="SBO:0000247" id="MAM01288m" name="ADP-ribose" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C15H21N5O14P2">
+      <species metaid="M_MAM01288m" sboTerm="SBO:0000247" id="M_MAM01288m" name="ADP-ribose" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C15H21N5O14P2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01288m">
+            <rdf:Description rdf:about="#M_MAM01288m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/adprib"/>
@@ -90584,10 +90636,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02845m" sboTerm="SBO:0000247" id="MAM02845m" name="ribose-5-phosphate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C5H9O8P">
+      <species metaid="M_MAM02845m" sboTerm="SBO:0000247" id="M_MAM02845m" name="ribose-5-phosphate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C5H9O8P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02845m">
+            <rdf:Description rdf:about="#M_MAM02845m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/r5p"/>
@@ -90603,10 +90655,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00119x" sboTerm="SBO:0000247" id="MAM00119x" name="(7Z,10Z,13Z,16Z)-docosatetraenoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C43H66N7O17P3S">
+      <species metaid="M_MAM00119x" sboTerm="SBO:0000247" id="M_MAM00119x" name="(7Z,10Z,13Z,16Z)-docosatetraenoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C43H66N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00119x">
+            <rdf:Description rdf:about="#M_MAM00119x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/adrncoa"/>
@@ -90621,10 +90673,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03419c" sboTerm="SBO:0000247" id="MAM03419c" name="Lysophosphatidic Acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C3H6O5PRCO2">
+      <species metaid="M_MAM03419c" sboTerm="SBO:0000247" id="M_MAM03419c" name="Lysophosphatidic Acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C3H6O5PRCO2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03419c">
+            <rdf:Description rdf:about="#M_MAM03419c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/alpa_hs"/>
@@ -90636,10 +90688,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03417x" sboTerm="SBO:0000247" id="MAM03417x" name="Hydroxy Alkyl Chain" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="HOR">
+      <species metaid="M_MAM03417x" sboTerm="SBO:0000247" id="M_MAM03417x" name="Hydroxy Alkyl Chain" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="HOR">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03417x">
+            <rdf:Description rdf:about="#M_MAM03417x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/alkylR1oh"/>
@@ -90651,10 +90703,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00564c" sboTerm="SBO:0000247" id="MAM00564c" name="2(S)-pristanal" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H38O">
+      <species metaid="M_MAM00564c" sboTerm="SBO:0000247" id="M_MAM00564c" name="2(S)-pristanal" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H38O">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00564c">
+            <rdf:Description rdf:about="#M_MAM00564c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/hmdb/HMDB01958"/>
@@ -90668,10 +90720,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02766c" sboTerm="SBO:0000247" id="MAM02766c" name="pristanic acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C19H37O2">
+      <species metaid="M_MAM02766c" sboTerm="SBO:0000247" id="M_MAM02766c" name="pristanic acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C19H37O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02766c">
+            <rdf:Description rdf:about="#M_MAM02766c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/prist"/>
@@ -90688,10 +90740,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01984c" sboTerm="SBO:0000247" id="MAM01984c" name="glycerone" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H6O3">
+      <species metaid="M_MAM01984c" sboTerm="SBO:0000247" id="M_MAM01984c" name="glycerone" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H6O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01984c">
+            <rdf:Description rdf:about="#M_MAM01984c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dha"/>
@@ -90707,10 +90759,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00755r" sboTerm="SBO:0000247" id="MAM00755r" name="3alpha,7alpha-dihydroxy-5beta-cholest-24-enoyl-CoA" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C48H74N7O19P3S">
+      <species metaid="M_MAM00755r" sboTerm="SBO:0000247" id="M_MAM00755r" name="3alpha,7alpha-dihydroxy-5beta-cholest-24-enoyl-CoA" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C48H74N7O19P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00755r">
+            <rdf:Description rdf:about="#M_MAM00755r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dhcholoylcoa"/>
@@ -90727,10 +90779,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00618r" sboTerm="SBO:0000247" id="MAM00618r" name="25(S)THCA-CoA" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C48H76N7O20P3S">
+      <species metaid="M_MAM00618r" sboTerm="SBO:0000247" id="M_MAM00618r" name="25(S)THCA-CoA" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C48H76N7O20P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00618r">
+            <rdf:Description rdf:about="#M_MAM00618r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/cholcoas"/>
@@ -90747,10 +90799,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01992e" sboTerm="SBO:0000247" id="MAM01992e" name="glycogenin G4G7" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C1845H2835N455O583S14">
+      <species metaid="M_MAM01992e" sboTerm="SBO:0000247" id="M_MAM01992e" name="glycogenin G4G7" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C1845H2835N455O583S14">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01992e">
+            <rdf:Description rdf:about="#M_MAM01992e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/glygn2"/>
@@ -90762,10 +90814,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03622e" sboTerm="SBO:0000247" id="MAM03622e" name="Glycogen, Structure 4 (Glycogenin-1,6-{2[1,4-Glc], [1,4-Glc]})" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C1797H2755N455O543S14">
+      <species metaid="M_MAM03622e" sboTerm="SBO:0000247" id="M_MAM03622e" name="Glycogen, Structure 4 (Glycogenin-1,6-{2[1,4-Glc], [1,4-Glc]})" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C1797H2755N455O543S14">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03622e">
+            <rdf:Description rdf:about="#M_MAM03622e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/glygn4"/>
@@ -90777,10 +90829,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00185m" sboTerm="SBO:0000247" id="MAM00185m" name="[apocarboxlase]" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="XH">
+      <species metaid="M_MAM00185m" sboTerm="SBO:0000247" id="M_MAM00185m" name="[apocarboxlase]" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="XH">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00185m">
+            <rdf:Description rdf:about="#M_MAM00185m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/apoC"/>
@@ -90792,10 +90844,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01356m" sboTerm="SBO:0000247" id="MAM01356m" name="apoC-lys" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H13N2OX">
+      <species metaid="M_MAM01356m" sboTerm="SBO:0000247" id="M_MAM01356m" name="apoC-lys" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H13N2OX">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01356m">
+            <rdf:Description rdf:about="#M_MAM01356m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/apoC_Lys"/>
@@ -90807,10 +90859,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01357m" sboTerm="SBO:0000247" id="MAM01357m" name="apoC-lys_btn" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C16H27N4O3SX">
+      <species metaid="M_MAM01357m" sboTerm="SBO:0000247" id="M_MAM01357m" name="apoC-lys_btn" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C16H27N4O3SX">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01357m">
+            <rdf:Description rdf:about="#M_MAM01357m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/apoC_Lys_btn"/>
@@ -90823,10 +90875,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01400m" sboTerm="SBO:0000247" id="MAM01400m" name="biocytin" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C16H28N4O4S">
+      <species metaid="M_MAM01400m" sboTerm="SBO:0000247" id="M_MAM01400m" name="biocytin" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C16H28N4O4S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01400m">
+            <rdf:Description rdf:about="#M_MAM01400m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/biocyt"/>
@@ -90843,10 +90895,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03791c" sboTerm="SBO:0000247" id="MAM03791c" name="11-Octadecenoyl Coenzyme A" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C39H64N7O17P3S">
+      <species metaid="M_MAM03791c" sboTerm="SBO:0000247" id="M_MAM03791c" name="11-Octadecenoyl Coenzyme A" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C39H64N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03791c">
+            <rdf:Description rdf:about="#M_MAM03791c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/octd11ecoa"/>
@@ -90857,10 +90909,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00051c" sboTerm="SBO:0000247" id="MAM00051c" name="(2E)-hexadecenoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C37H60N7O17P3S">
+      <species metaid="M_MAM00051c" sboTerm="SBO:0000247" id="M_MAM00051c" name="(2E)-hexadecenoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C37H60N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00051c">
+            <rdf:Description rdf:about="#M_MAM00051c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hdd2coa"/>
@@ -90877,10 +90929,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03635g" sboTerm="SBO:0000247" id="MAM03635g" name="Ganglioside Gm1" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C55H95N3O30RCO">
+      <species metaid="M_MAM03635g" sboTerm="SBO:0000247" id="M_MAM03635g" name="Ganglioside Gm1" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C55H95N3O30RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03635g">
+            <rdf:Description rdf:about="#M_MAM03635g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/gm1_hs"/>
@@ -90895,10 +90947,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03584g" sboTerm="SBO:0000247" id="MAM03584g" name="I-Antigen" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C72H125N4O42RCO">
+      <species metaid="M_MAM03584g" sboTerm="SBO:0000247" id="M_MAM03584g" name="I-Antigen" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C72H125N4O42RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03584g">
+            <rdf:Description rdf:about="#M_MAM03584g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/galacglcgalacglcgal14acglcgalgluside_hs"/>
@@ -90910,10 +90962,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01988x" sboTerm="SBO:0000247" id="MAM01988x" name="glycocholate" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C26H43NO6">
+      <species metaid="M_MAM01988x" sboTerm="SBO:0000247" id="M_MAM01988x" name="glycocholate" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C26H43NO6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01988x">
+            <rdf:Description rdf:about="#M_MAM01988x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/gchola"/>
@@ -90931,10 +90983,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03548x" sboTerm="SBO:0000247" id="MAM03548x" name="Chenodeoxyglycocholoyl Coenzyme A" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C45H70N7O19P3S">
+      <species metaid="M_MAM03548x" sboTerm="SBO:0000247" id="M_MAM03548x" name="Chenodeoxyglycocholoyl Coenzyme A" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C45H70N7O19P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03548x">
+            <rdf:Description rdf:about="#M_MAM03548x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dgcholcoa"/>
@@ -90947,10 +90999,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01987x" sboTerm="SBO:0000247" id="MAM01987x" name="glycochenodeoxycholate" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C26H43NO5">
+      <species metaid="M_MAM01987x" sboTerm="SBO:0000247" id="M_MAM01987x" name="glycochenodeoxycholate" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C26H43NO5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01987x">
+            <rdf:Description rdf:about="#M_MAM01987x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dgchol"/>
@@ -90967,10 +91019,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01401m" sboTerm="SBO:0000247" id="MAM01401m" name="biotin" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H15N2O3S">
+      <species metaid="M_MAM01401m" sboTerm="SBO:0000247" id="M_MAM01401m" name="biotin" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H15N2O3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01401m">
+            <rdf:Description rdf:about="#M_MAM01401m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/btn"/>
@@ -90986,10 +91038,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01402m" sboTerm="SBO:0000247" id="MAM01402m" name="biotinyl-5-AMP" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H27N7O9PS">
+      <species metaid="M_MAM01402m" sboTerm="SBO:0000247" id="M_MAM01402m" name="biotinyl-5-AMP" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H27N7O9PS">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01402m">
+            <rdf:Description rdf:about="#M_MAM01402m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/btamp"/>
@@ -91004,10 +91056,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00760m" sboTerm="SBO:0000247" id="MAM00760m" name="3-amino-propanal" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C3H8NO">
+      <species metaid="M_MAM00760m" sboTerm="SBO:0000247" id="M_MAM00760m" name="3-amino-propanal" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C3H8NO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00760m">
+            <rdf:Description rdf:about="#M_MAM00760m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:58374"/>
@@ -91021,10 +91073,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01410m" sboTerm="SBO:0000247" id="MAM01410m" name="butyrate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C4H7O2">
+      <species metaid="M_MAM01410m" sboTerm="SBO:0000247" id="M_MAM01410m" name="butyrate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C4H7O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01410m">
+            <rdf:Description rdf:about="#M_MAM01410m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/but"/>
@@ -91042,10 +91094,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03484e" sboTerm="SBO:0000247" id="MAM03484e" name="Beta-Tocopherol" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C28H48O2">
+      <species metaid="M_MAM03484e" sboTerm="SBO:0000247" id="M_MAM03484e" name="Beta-Tocopherol" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C28H48O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03484e">
+            <rdf:Description rdf:about="#M_MAM03484e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/bvite"/>
@@ -91058,10 +91110,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03484c" sboTerm="SBO:0000247" id="MAM03484c" name="Beta-Tocopherol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C28H48O2">
+      <species metaid="M_MAM03484c" sboTerm="SBO:0000247" id="M_MAM03484c" name="Beta-Tocopherol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C28H48O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03484c">
+            <rdf:Description rdf:about="#M_MAM03484c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/bvite"/>
@@ -91074,10 +91126,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01380e" sboTerm="SBO:0000247" id="MAM01380e" name="benzoate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C7H5O2">
+      <species metaid="M_MAM01380e" sboTerm="SBO:0000247" id="M_MAM01380e" name="benzoate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C7H5O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01380e">
+            <rdf:Description rdf:about="#M_MAM01380e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/bz"/>
@@ -91091,10 +91143,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00941r" sboTerm="SBO:0000247" id="MAM00941r" name="4,4-dimethyl-5alpha-cholesta-8,14,24-trien-3beta-ol" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C29H46O">
+      <species metaid="M_MAM00941r" sboTerm="SBO:0000247" id="M_MAM00941r" name="4,4-dimethyl-5alpha-cholesta-8,14,24-trien-3beta-ol" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C29H46O">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00941r">
+            <rdf:Description rdf:about="#M_MAM00941r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/44mctr"/>
@@ -91113,10 +91165,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00367r" sboTerm="SBO:0000247" id="MAM00367r" name="14-demethyllanosterol" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C29H48O">
+      <species metaid="M_MAM00367r" sboTerm="SBO:0000247" id="M_MAM00367r" name="14-demethyllanosterol" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C29H48O">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00367r">
+            <rdf:Description rdf:about="#M_MAM00367r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/44mzym"/>
@@ -91133,10 +91185,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00953r" sboTerm="SBO:0000247" id="MAM00953r" name="4alpha-carboxy-4beta-methyl-5alpha-cholesta-8,24-dien-3beta-ol" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C29H46O3">
+      <species metaid="M_MAM00953r" sboTerm="SBO:0000247" id="M_MAM00953r" name="4alpha-carboxy-4beta-methyl-5alpha-cholesta-8,24-dien-3beta-ol" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C29H46O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00953r">
+            <rdf:Description rdf:about="#M_MAM00953r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C15808"/>
@@ -91151,10 +91203,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM04082r" sboTerm="SBO:0000247" id="MAM04082r" name="Zymosterol Intermediate 2" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H42O">
+      <species metaid="M_MAM04082r" sboTerm="SBO:0000247" id="M_MAM04082r" name="Zymosterol Intermediate 2" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H42O">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM04082r">
+            <rdf:Description rdf:about="#M_MAM04082r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/zym_int2"/>
@@ -91168,10 +91220,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03158r" sboTerm="SBO:0000247" id="MAM03158r" name="zymosterol" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H44O">
+      <species metaid="M_MAM03158r" sboTerm="SBO:0000247" id="M_MAM03158r" name="zymosterol" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H44O">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03158r">
+            <rdf:Description rdf:about="#M_MAM03158r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/zymst"/>
@@ -91188,10 +91240,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02579r" sboTerm="SBO:0000247" id="MAM02579r" name="NH4+" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="H4N">
+      <species metaid="M_MAM02579r" sboTerm="SBO:0000247" id="M_MAM02579r" name="NH4+" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="H4N">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02579r">
+            <rdf:Description rdf:about="#M_MAM02579r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/nh4"/>
@@ -91207,10 +91259,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01427m" sboTerm="SBO:0000247" id="MAM01427m" name="CDP-diacylglycerol-LD-PI pool" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C14H17N3O15P2R2">
+      <species metaid="M_MAM01427m" sboTerm="SBO:0000247" id="M_MAM01427m" name="CDP-diacylglycerol-LD-PI pool" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C14H17N3O15P2R2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01427m">
+            <rdf:Description rdf:about="#M_MAM01427m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/cdpdag_hs"/>
@@ -91224,10 +91276,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02733m" sboTerm="SBO:0000247" id="MAM02733m" name="phosphatidate-LD-TAG pool" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C5H5O8PR2">
+      <species metaid="M_MAM02733m" sboTerm="SBO:0000247" id="M_MAM02733m" name="phosphatidate-LD-TAG pool" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C5H5O8PR2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02733m">
+            <rdf:Description rdf:about="#M_MAM02733m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pa_hs"/>
@@ -91242,10 +91294,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00121x" sboTerm="SBO:0000247" id="MAM00121x" name="(7Z,10Z,13Z,16Z,19Z)-docosapentaenoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C43H64N7O17P3S">
+      <species metaid="M_MAM00121x" sboTerm="SBO:0000247" id="M_MAM00121x" name="(7Z,10Z,13Z,16Z,19Z)-docosapentaenoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C43H64N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00121x">
+            <rdf:Description rdf:about="#M_MAM00121x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/clpndcoa"/>
@@ -91263,10 +91315,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02715c" sboTerm="SBO:0000247" id="MAM02715c" name="PG-CL pool" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C8H12O10PR2">
+      <species metaid="M_MAM02715c" sboTerm="SBO:0000247" id="M_MAM02715c" name="PG-CL pool" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C8H12O10PR2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02715c">
+            <rdf:Description rdf:about="#M_MAM02715c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pglyc_hs"/>
@@ -91280,10 +91332,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01596n" sboTerm="SBO:0000247" id="MAM01596n" name="CO2" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="CO2">
+      <species metaid="M_MAM01596n" sboTerm="SBO:0000247" id="M_MAM01596n" name="CO2" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="CO2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01596n">
+            <rdf:Description rdf:about="#M_MAM01596n">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/co2"/>
@@ -91300,10 +91352,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03175m" sboTerm="SBO:0000247" id="MAM03175m" name="2-Decaprenyl-5-Hydroxy-6-Methoxy-3-Methyl-1,4-Benzoquinone" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C58H88O4">
+      <species metaid="M_MAM03175m" sboTerm="SBO:0000247" id="M_MAM03175m" name="2-Decaprenyl-5-Hydroxy-6-Methoxy-3-Methyl-1,4-Benzoquinone" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C58H88O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03175m">
+            <rdf:Description rdf:about="#M_MAM03175m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/2dpmhobq"/>
@@ -91316,10 +91368,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03173m" sboTerm="SBO:0000247" id="MAM03173m" name="2-Decaprenyl-6-Methoxy-1,4-Benzoquinone" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C57H86O3">
+      <species metaid="M_MAM03173m" sboTerm="SBO:0000247" id="M_MAM03173m" name="2-Decaprenyl-6-Methoxy-1,4-Benzoquinone" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C57H86O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03173m">
+            <rdf:Description rdf:about="#M_MAM03173m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/2dp6mobq"/>
@@ -91332,10 +91384,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03174m" sboTerm="SBO:0000247" id="MAM03174m" name="2-Decaprenyl-6-Methoxy-3-Methyl-1,4-Benzoquinone" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C58H88O3">
+      <species metaid="M_MAM03174m" sboTerm="SBO:0000247" id="M_MAM03174m" name="2-Decaprenyl-6-Methoxy-3-Methyl-1,4-Benzoquinone" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C58H88O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03174m">
+            <rdf:Description rdf:about="#M_MAM03174m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/2dp6mobq_me"/>
@@ -91348,10 +91400,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00981m" sboTerm="SBO:0000247" id="MAM00981m" name="4-coumarate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C9H7O3">
+      <species metaid="M_MAM00981m" sboTerm="SBO:0000247" id="M_MAM00981m" name="4-coumarate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C9H7O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00981m">
+            <rdf:Description rdf:about="#M_MAM00981m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/T4hcinnm"/>
@@ -91366,10 +91418,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01431e" sboTerm="SBO:0000247" id="MAM01431e" name="ceramide-1P pool" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C18H35NO5PRCO">
+      <species metaid="M_MAM01431e" sboTerm="SBO:0000247" id="M_MAM01431e" name="ceramide-1P pool" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C18H35NO5PRCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01431e">
+            <rdf:Description rdf:about="#M_MAM01431e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/crmp_hs"/>
@@ -91381,10 +91433,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00950x" sboTerm="SBO:0000247" id="MAM00950x" name="4,8-dimethylnonanoylcarnitine" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H35NO4">
+      <species metaid="M_MAM00950x" sboTerm="SBO:0000247" id="M_MAM00950x" name="4,8-dimethylnonanoylcarnitine" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H35NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00950x">
+            <rdf:Description rdf:about="#M_MAM00950x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dmnoncrn"/>
@@ -91397,10 +91449,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03554x" sboTerm="SBO:0000247" id="MAM03554x" name="4,8-Dimethylnonanoyl Coenzyme A" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C32H52N7O17P3S">
+      <species metaid="M_MAM03554x" sboTerm="SBO:0000247" id="M_MAM03554x" name="4,8-Dimethylnonanoyl Coenzyme A" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C32H52N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03554x">
+            <rdf:Description rdf:about="#M_MAM03554x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dmnoncoa"/>
@@ -91412,10 +91464,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02579n" sboTerm="SBO:0000247" id="MAM02579n" name="NH4+" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="H4N">
+      <species metaid="M_MAM02579n" sboTerm="SBO:0000247" id="M_MAM02579n" name="NH4+" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="H4N">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02579n">
+            <rdf:Description rdf:about="#M_MAM02579n">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/nh4"/>
@@ -91431,10 +91483,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00240r" sboTerm="SBO:0000247" id="MAM00240r" name="1,2-diacylglycerol-LD-TAG pool" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H6O5R2">
+      <species metaid="M_MAM00240r" sboTerm="SBO:0000247" id="M_MAM00240r" name="1,2-diacylglycerol-LD-TAG pool" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H6O5R2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00240r">
+            <rdf:Description rdf:about="#M_MAM00240r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dag_hs"/>
@@ -91449,10 +91501,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02733n" sboTerm="SBO:0000247" id="MAM02733n" name="phosphatidate-LD-TAG pool" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C5H5O8PR2">
+      <species metaid="M_MAM02733n" sboTerm="SBO:0000247" id="M_MAM02733n" name="phosphatidate-LD-TAG pool" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C5H5O8PR2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02733n">
+            <rdf:Description rdf:about="#M_MAM02733n">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pa_hs"/>
@@ -91467,10 +91519,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00240e" sboTerm="SBO:0000247" id="MAM00240e" name="1,2-diacylglycerol-LD-TAG pool" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H6O5R2">
+      <species metaid="M_MAM00240e" sboTerm="SBO:0000247" id="M_MAM00240e" name="1,2-diacylglycerol-LD-TAG pool" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H6O5R2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00240e">
+            <rdf:Description rdf:about="#M_MAM00240e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dag_hs"/>
@@ -91485,10 +91537,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02579x" sboTerm="SBO:0000247" id="MAM02579x" name="NH4+" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="H4N">
+      <species metaid="M_MAM02579x" sboTerm="SBO:0000247" id="M_MAM02579x" name="NH4+" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="H4N">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02579x">
+            <rdf:Description rdf:about="#M_MAM02579x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/nh4"/>
@@ -91504,10 +91556,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02959c" sboTerm="SBO:0000247" id="MAM02959c" name="TAG-VLDL pool" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H5O6R3">
+      <species metaid="M_MAM02959c" sboTerm="SBO:0000247" id="M_MAM02959c" name="TAG-VLDL pool" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H5O6R3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02959c">
+            <rdf:Description rdf:about="#M_MAM02959c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/tag_hs"/>
@@ -91522,10 +91574,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02343r" sboTerm="SBO:0000247" id="MAM02343r" name="lathosterol" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H46O">
+      <species metaid="M_MAM02343r" sboTerm="SBO:0000247" id="M_MAM02343r" name="lathosterol" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H46O">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02343r">
+            <rdf:Description rdf:about="#M_MAM02343r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/lthstrl"/>
@@ -91544,10 +91596,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01675r" sboTerm="SBO:0000247" id="MAM01675r" name="desmosterol" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H44O">
+      <species metaid="M_MAM01675r" sboTerm="SBO:0000247" id="M_MAM01675r" name="desmosterol" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H44O">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01675r">
+            <rdf:Description rdf:about="#M_MAM01675r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dsmsterol"/>
@@ -91566,10 +91618,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00348n" sboTerm="SBO:0000247" id="MAM00348n" name="13-cis-oxo-retinoate" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H27O3">
+      <species metaid="M_MAM00348n" sboTerm="SBO:0000247" id="M_MAM00348n" name="13-cis-oxo-retinoate" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H27O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00348n">
+            <rdf:Description rdf:about="#M_MAM00348n">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/13_cis_oretn"/>
@@ -91581,10 +91633,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00350n" sboTerm="SBO:0000247" id="MAM00350n" name="13-cis-retinoate" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H27O2">
+      <species metaid="M_MAM00350n" sboTerm="SBO:0000247" id="M_MAM00350n" name="13-cis-retinoate" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H27O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00350n">
+            <rdf:Description rdf:about="#M_MAM00350n">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/13_cis_retn"/>
@@ -91602,10 +91654,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01006n" sboTerm="SBO:0000247" id="MAM01006n" name="4-hydroxyretinoic acid" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H27O3">
+      <species metaid="M_MAM01006n" sboTerm="SBO:0000247" id="M_MAM01006n" name="4-hydroxyretinoic acid" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H27O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01006n">
+            <rdf:Description rdf:about="#M_MAM01006n">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hretn"/>
@@ -91621,10 +91673,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01026n" sboTerm="SBO:0000247" id="MAM01026n" name="4-oxo-13-cis-retinoate" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H27O3">
+      <species metaid="M_MAM01026n" sboTerm="SBO:0000247" id="M_MAM01026n" name="4-oxo-13-cis-retinoate" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H27O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01026n">
+            <rdf:Description rdf:about="#M_MAM01026n">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/oretn"/>
@@ -91639,10 +91691,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03395l" sboTerm="SBO:0000247" id="MAM03395l" name="Protein-Linked Serine Or Threonine Residue (O-Glycosylation Site)" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="XH">
+      <species metaid="M_MAM03395l" sboTerm="SBO:0000247" id="M_MAM03395l" name="Protein-Linked Serine Or Threonine Residue (O-Glycosylation Site)" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="XH">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03395l">
+            <rdf:Description rdf:about="#M_MAM03395l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/Ser_Thr"/>
@@ -91654,10 +91706,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01706x" sboTerm="SBO:0000247" id="MAM01706x" name="dimethylallyl-PP" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C5H9O7P2">
+      <species metaid="M_MAM01706x" sboTerm="SBO:0000247" id="M_MAM01706x" name="dimethylallyl-PP" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C5H9O7P2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01706x">
+            <rdf:Description rdf:about="#M_MAM01706x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dmpp"/>
@@ -91674,10 +91726,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01953x" sboTerm="SBO:0000247" id="MAM01953x" name="geranyl-PP" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C10H17O7P2">
+      <species metaid="M_MAM01953x" sboTerm="SBO:0000247" id="M_MAM01953x" name="geranyl-PP" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C10H17O7P2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01953x">
+            <rdf:Description rdf:about="#M_MAM01953x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/grdp"/>
@@ -91692,10 +91744,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03553m" sboTerm="SBO:0000247" id="MAM03553m" name="2,6-Dimethylheptanoyl Coenzyme A" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C30H48N7O17P3S">
+      <species metaid="M_MAM03553m" sboTerm="SBO:0000247" id="M_MAM03553m" name="2,6-Dimethylheptanoyl Coenzyme A" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C30H48N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03553m">
+            <rdf:Description rdf:about="#M_MAM03553m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dmhptcoa"/>
@@ -91707,10 +91759,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03554c" sboTerm="SBO:0000247" id="MAM03554c" name="4,8-Dimethylnonanoyl Coenzyme A" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C32H52N7O17P3S">
+      <species metaid="M_MAM03554c" sboTerm="SBO:0000247" id="M_MAM03554c" name="4,8-Dimethylnonanoyl Coenzyme A" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C32H52N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03554c">
+            <rdf:Description rdf:about="#M_MAM03554c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dmnoncoa"/>
@@ -91722,10 +91774,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03554m" sboTerm="SBO:0000247" id="MAM03554m" name="4,8-Dimethylnonanoyl Coenzyme A" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C32H52N7O17P3S">
+      <species metaid="M_MAM03554m" sboTerm="SBO:0000247" id="M_MAM03554m" name="4,8-Dimethylnonanoyl Coenzyme A" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C32H52N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03554m">
+            <rdf:Description rdf:about="#M_MAM03554m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dmnoncoa"/>
@@ -91737,10 +91789,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01731c" sboTerm="SBO:0000247" id="MAM01731c" name="dolichyl-D-glucosyl-phosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C106H174O9P">
+      <species metaid="M_MAM01731c" sboTerm="SBO:0000247" id="M_MAM01731c" name="dolichyl-D-glucosyl-phosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C106H174O9P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01731c">
+            <rdf:Description rdf:about="#M_MAM01731c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dolglcp__L"/>
@@ -91755,10 +91807,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00164x" sboTerm="SBO:0000247" id="MAM00164x" name="(R)-5-diphosphomevalonate" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C6H10O10P2">
+      <species metaid="M_MAM00164x" sboTerm="SBO:0000247" id="M_MAM00164x" name="(R)-5-diphosphomevalonate" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C6H10O10P2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00164x">
+            <rdf:Description rdf:about="#M_MAM00164x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/5dpmev"/>
@@ -91773,10 +91825,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01742x" sboTerm="SBO:0000247" id="MAM01742x" name="D-proline" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H9NO2">
+      <species metaid="M_MAM01742x" sboTerm="SBO:0000247" id="M_MAM01742x" name="D-proline" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H9NO2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01742x">
+            <rdf:Description rdf:about="#M_MAM01742x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pro__D"/>
@@ -91793,10 +91845,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00558x" sboTerm="SBO:0000247" id="MAM00558x" name="1-pyrroline-2-carboxylate" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C5H6NO2">
+      <species metaid="M_MAM00558x" sboTerm="SBO:0000247" id="M_MAM00558x" name="1-pyrroline-2-carboxylate" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C5H6NO2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00558x">
+            <rdf:Description rdf:about="#M_MAM00558x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/1p2cbxl"/>
@@ -91812,10 +91864,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03849r" sboTerm="SBO:0000247" id="MAM03849r" name="Pseudoecgonine" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C9H14NO3">
+      <species metaid="M_MAM03849r" sboTerm="SBO:0000247" id="M_MAM03849r" name="Pseudoecgonine" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C9H14NO3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03849r">
+            <rdf:Description rdf:about="#M_MAM03849r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pecgon"/>
@@ -91828,10 +91880,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01651c" sboTerm="SBO:0000247" id="MAM01651c" name="de-Fuc form of PA6 (wo peptide linkage)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C84H136N6O62">
+      <species metaid="M_MAM01651c" sboTerm="SBO:0000247" id="M_MAM01651c" name="de-Fuc form of PA6 (wo peptide linkage)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C84H136N6O62">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01651c">
+            <rdf:Description rdf:about="#M_MAM01651c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/s2l2n2m2m"/>
@@ -91843,10 +91895,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01653c" sboTerm="SBO:0000247" id="MAM01653c" name="de-Fuc, GlcNAc removed PA6 (wo peptide linkage)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C76H123N5O57">
+      <species metaid="M_MAM01653c" sboTerm="SBO:0000247" id="M_MAM01653c" name="de-Fuc, GlcNAc removed PA6 (wo peptide linkage)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C76H123N5O57">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01653c">
+            <rdf:Description rdf:about="#M_MAM01653c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/s2l2n2m2mn"/>
@@ -91858,10 +91910,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02511c" sboTerm="SBO:0000247" id="MAM02511c" name="n2m2nmn" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C50H84N4O36">
+      <species metaid="M_MAM02511c" sboTerm="SBO:0000247" id="M_MAM02511c" name="n2m2nmn" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C50H84N4O36">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02511c">
+            <rdf:Description rdf:about="#M_MAM02511c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/n2m2nmn"/>
@@ -91873,10 +91925,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02509c" sboTerm="SBO:0000247" id="MAM02509c" name="n2m2nm" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C58H97N5O41">
+      <species metaid="M_MAM02509c" sboTerm="SBO:0000247" id="M_MAM02509c" name="n2m2nm" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C58H97N5O41">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02509c">
+            <rdf:Description rdf:about="#M_MAM02509c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/n2m2nm"/>
@@ -91888,10 +91940,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03591g" sboTerm="SBO:0000247" id="MAM03591g" name="Glucose-1,3-Mannose Oligosaccharide" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C12H22O11">
+      <species metaid="M_MAM03591g" sboTerm="SBO:0000247" id="M_MAM03591g" name="Glucose-1,3-Mannose Oligosaccharide" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C12H22O11">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03591g">
+            <rdf:Description rdf:about="#M_MAM03591g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/glc1man"/>
@@ -91905,10 +91957,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03592g" sboTerm="SBO:0000247" id="MAM03592g" name="(2)[Glucose-1,3]-Mannose Oligosaccharide" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H32O16">
+      <species metaid="M_MAM03592g" sboTerm="SBO:0000247" id="M_MAM03592g" name="(2)[Glucose-1,3]-Mannose Oligosaccharide" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H32O16">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03592g">
+            <rdf:Description rdf:about="#M_MAM03592g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/glc2man"/>
@@ -91920,10 +91972,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03593g" sboTerm="SBO:0000247" id="MAM03593g" name="Glucose-1,2-(2)[Glucose-1,3]-Mannose Oligosaccharide" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C24H42O21">
+      <species metaid="M_MAM03593g" sboTerm="SBO:0000247" id="M_MAM03593g" name="Glucose-1,2-(2)[Glucose-1,3]-Mannose Oligosaccharide" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C24H42O21">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03593g">
+            <rdf:Description rdf:about="#M_MAM03593g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/glc3man"/>
@@ -91935,10 +91987,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03573m" sboTerm="SBO:0000247" id="MAM03573m" name="Electron Transfer Flavoprotein Oxidized" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="R">
+      <species metaid="M_MAM03573m" sboTerm="SBO:0000247" id="M_MAM03573m" name="Electron Transfer Flavoprotein Oxidized" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="R">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03573m">
+            <rdf:Description rdf:about="#M_MAM03573m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/etfox"/>
@@ -91950,10 +92002,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03574m" sboTerm="SBO:0000247" id="MAM03574m" name="Electron Transfer Flavoprotein Reduced" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="RH2">
+      <species metaid="M_MAM03574m" sboTerm="SBO:0000247" id="M_MAM03574m" name="Electron Transfer Flavoprotein Reduced" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="RH2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03574m">
+            <rdf:Description rdf:about="#M_MAM03574m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/etfrd"/>
@@ -91965,10 +92017,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01893e" sboTerm="SBO:0000247" id="MAM01893e" name="1-Acyl Phosphoglycerol" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H13O7PRCO2">
+      <species metaid="M_MAM01893e" sboTerm="SBO:0000247" id="M_MAM01893e" name="1-Acyl Phosphoglycerol" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H13O7PRCO2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01893e">
+            <rdf:Description rdf:about="#M_MAM01893e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/1glyc_hs"/>
@@ -91980,10 +92032,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03315e" sboTerm="SBO:0000247" id="MAM03315e" name="Fatty Acid 9-Cis-Retinol" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H29O2R">
+      <species metaid="M_MAM03315e" sboTerm="SBO:0000247" id="M_MAM03315e" name="Fatty Acid 9-Cis-Retinol" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H29O2R">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03315e">
+            <rdf:Description rdf:about="#M_MAM03315e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/9_cis_retfa"/>
@@ -91995,10 +92047,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03577e" sboTerm="SBO:0000247" id="MAM03577e" name="Ley Glycolipid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C56H99N2O30RCO">
+      <species metaid="M_MAM03577e" sboTerm="SBO:0000247" id="M_MAM03577e" name="Ley Glycolipid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C56H99N2O30RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03577e">
+            <rdf:Description rdf:about="#M_MAM03577e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/fucfuc12gal14acglcgalgluside_hs"/>
@@ -92010,10 +92062,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03578e" sboTerm="SBO:0000247" id="MAM03578e" name="Leb Glycolipid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C56H99N2O30RCO">
+      <species metaid="M_MAM03578e" sboTerm="SBO:0000247" id="M_MAM03578e" name="Leb Glycolipid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C56H99N2O30RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03578e">
+            <rdf:Description rdf:about="#M_MAM03578e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/fucfucgalacglcgalgluside_hs"/>
@@ -92025,10 +92077,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03620e" sboTerm="SBO:0000247" id="MAM03620e" name="(S)-Glycerate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H5O4">
+      <species metaid="M_MAM03620e" sboTerm="SBO:0000247" id="M_MAM03620e" name="(S)-Glycerate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H5O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03620e">
+            <rdf:Description rdf:about="#M_MAM03620e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/pubchem.compound/6326776"/>
@@ -92039,10 +92091,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03623e" sboTerm="SBO:0000247" id="MAM03623e" name="Glycogen, Structure 5 (Glycogenin-2[1,4-Glc])" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C1791H2745N455O538S14">
+      <species metaid="M_MAM03623e" sboTerm="SBO:0000247" id="M_MAM03623e" name="Glycogen, Structure 5 (Glycogenin-2[1,4-Glc])" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C1791H2745N455O538S14">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03623e">
+            <rdf:Description rdf:about="#M_MAM03623e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/glygn5"/>
@@ -92054,10 +92106,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00656e" sboTerm="SBO:0000247" id="MAM00656e" name="2-lysolecithin pool" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H19NO5PRCO2">
+      <species metaid="M_MAM00656e" sboTerm="SBO:0000247" id="M_MAM00656e" name="2-lysolecithin pool" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H19NO5PRCO2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00656e">
+            <rdf:Description rdf:about="#M_MAM00656e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/lpchol_hs"/>
@@ -92072,10 +92124,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02715e" sboTerm="SBO:0000247" id="MAM02715e" name="PG-CL pool" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C8H12O10PR2">
+      <species metaid="M_MAM02715e" sboTerm="SBO:0000247" id="M_MAM02715e" name="PG-CL pool" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C8H12O10PR2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02715e">
+            <rdf:Description rdf:about="#M_MAM02715e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pglyc_hs"/>
@@ -92089,10 +92141,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03884e" sboTerm="SBO:0000247" id="MAM03884e" name="Phytanate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H39O2">
+      <species metaid="M_MAM03884e" sboTerm="SBO:0000247" id="M_MAM03884e" name="Phytanate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H39O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03884e">
+            <rdf:Description rdf:about="#M_MAM03884e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/phyt"/>
@@ -92108,10 +92160,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02808e" sboTerm="SBO:0000247" id="MAM02808e" name="PS-LD pool" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C8H11NO10PR2">
+      <species metaid="M_MAM02808e" sboTerm="SBO:0000247" id="M_MAM02808e" name="PS-LD pool" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C8H11NO10PR2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02808e">
+            <rdf:Description rdf:about="#M_MAM02808e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ps_hs"/>
@@ -92127,10 +92179,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01232e" sboTerm="SBO:0000247" id="MAM01232e" name="9-cis-retinol" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H30O">
+      <species metaid="M_MAM01232e" sboTerm="SBO:0000247" id="M_MAM01232e" name="9-cis-retinol" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H30O">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01232e">
+            <rdf:Description rdf:about="#M_MAM01232e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/retinol_9_cis"/>
@@ -92145,10 +92197,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00291e" sboTerm="SBO:0000247" id="MAM00291e" name="11-cis-retinol" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H30O">
+      <species metaid="M_MAM00291e" sboTerm="SBO:0000247" id="M_MAM00291e" name="11-cis-retinol" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H30O">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00291e">
+            <rdf:Description rdf:about="#M_MAM00291e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/retinol_cis_11"/>
@@ -92165,10 +92217,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM04081e" sboTerm="SBO:0000247" id="MAM04081e" name="Cholesterol Ester" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H45XCO2">
+      <species metaid="M_MAM04081e" sboTerm="SBO:0000247" id="M_MAM04081e" name="Cholesterol Ester" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H45XCO2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM04081e">
+            <rdf:Description rdf:about="#M_MAM04081e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/xolest_hs"/>
@@ -92180,10 +92232,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01446e" sboTerm="SBO:0000247" id="MAM01446e" name="cholest-5-ene-3beta,7alpha,24(S)-triol" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H46O3">
+      <species metaid="M_MAM01446e" sboTerm="SBO:0000247" id="M_MAM01446e" name="cholest-5-ene-3beta,7alpha,24(S)-triol" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H46O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01446e">
+            <rdf:Description rdf:about="#M_MAM01446e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/xoltri24"/>
@@ -92199,10 +92251,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01447e" sboTerm="SBO:0000247" id="MAM01447e" name="cholest-5-ene-3beta,7alpha,25-triol" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H46O3">
+      <species metaid="M_MAM01447e" sboTerm="SBO:0000247" id="M_MAM01447e" name="cholest-5-ene-3beta,7alpha,25-triol" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H46O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01447e">
+            <rdf:Description rdf:about="#M_MAM01447e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/xoltri25"/>
@@ -92218,10 +92270,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01448e" sboTerm="SBO:0000247" id="MAM01448e" name="cholest-5-ene-3beta,7alpha,27-triol" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H46O3">
+      <species metaid="M_MAM01448e" sboTerm="SBO:0000247" id="M_MAM01448e" name="cholest-5-ene-3beta,7alpha,27-triol" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H46O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01448e">
+            <rdf:Description rdf:about="#M_MAM01448e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/xoltri27"/>
@@ -92241,10 +92293,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03726c" sboTerm="SBO:0000247" id="MAM03726c" name="Linoleic Acid ACP (All Cis)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C29H51N2O8PRS">
+      <species metaid="M_MAM03726c" sboTerm="SBO:0000247" id="M_MAM03726c" name="Linoleic Acid ACP (All Cis)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C29H51N2O8PRS">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03726c">
+            <rdf:Description rdf:about="#M_MAM03726c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/lnlcACP"/>
@@ -92256,10 +92308,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03725c" sboTerm="SBO:0000247" id="MAM03725c" name="Linoelaidic Acid ACP (All Trans)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C29H51N2O8PRS">
+      <species metaid="M_MAM03725c" sboTerm="SBO:0000247" id="M_MAM03725c" name="Linoelaidic Acid ACP (All Trans)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C29H51N2O8PRS">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03725c">
+            <rdf:Description rdf:about="#M_MAM03725c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/lneldcACP"/>
@@ -92271,10 +92323,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03887c" sboTerm="SBO:0000247" id="MAM03887c" name="Pristanoyl Coenzyme A" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C40H68N7O17P3S">
+      <species metaid="M_MAM03887c" sboTerm="SBO:0000247" id="M_MAM03887c" name="Pristanoyl Coenzyme A" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C40H68N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03887c">
+            <rdf:Description rdf:about="#M_MAM03887c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pristcoa"/>
@@ -92288,10 +92340,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03884c" sboTerm="SBO:0000247" id="MAM03884c" name="Phytanate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H39O2">
+      <species metaid="M_MAM03884c" sboTerm="SBO:0000247" id="M_MAM03884c" name="Phytanate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H39O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03884c">
+            <rdf:Description rdf:about="#M_MAM03884c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/phyt"/>
@@ -92307,10 +92359,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03791m" sboTerm="SBO:0000247" id="MAM03791m" name="11-Octadecenoyl Coenzyme A" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C39H64N7O17P3S">
+      <species metaid="M_MAM03791m" sboTerm="SBO:0000247" id="M_MAM03791m" name="11-Octadecenoyl Coenzyme A" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C39H64N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03791m">
+            <rdf:Description rdf:about="#M_MAM03791m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/octd11ecoa"/>
@@ -92321,10 +92373,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00108x" sboTerm="SBO:0000247" id="MAM00108x" name="(6Z,9Z,12Z,15Z)-octadecatetraenoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C39H58N7O17P3S">
+      <species metaid="M_MAM00108x" sboTerm="SBO:0000247" id="M_MAM00108x" name="(6Z,9Z,12Z,15Z)-octadecatetraenoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C39H58N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00108x">
+            <rdf:Description rdf:about="#M_MAM00108x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/strdnccoa"/>
@@ -92340,10 +92392,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00103x" sboTerm="SBO:0000247" id="MAM00103x" name="(5Z,8Z,11Z,14Z,17Z)-eicosapentaenoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H60N7O17P3S">
+      <species metaid="M_MAM00103x" sboTerm="SBO:0000247" id="M_MAM00103x" name="(5Z,8Z,11Z,14Z,17Z)-eicosapentaenoyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H60N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00103x">
+            <rdf:Description rdf:about="#M_MAM00103x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/tmndnccoa"/>
@@ -92359,10 +92411,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03960c" sboTerm="SBO:0000247" id="MAM03960c" name="D-Tagatose 1-Phosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H11O9P">
+      <species metaid="M_MAM03960c" sboTerm="SBO:0000247" id="M_MAM03960c" name="D-Tagatose 1-Phosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H11O9P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03960c">
+            <rdf:Description rdf:about="#M_MAM03960c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/tag1p__D"/>
@@ -92375,10 +92427,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01806x" sboTerm="SBO:0000247" id="MAM01806x" name="farnesyl-PP" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C15H25O7P2">
+      <species metaid="M_MAM01806x" sboTerm="SBO:0000247" id="M_MAM01806x" name="farnesyl-PP" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C15H25O7P2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01806x">
+            <rdf:Description rdf:about="#M_MAM01806x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/frdp"/>
@@ -92395,10 +92447,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01806r" sboTerm="SBO:0000247" id="MAM01806r" name="farnesyl-PP" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C15H25O7P2">
+      <species metaid="M_MAM01806r" sboTerm="SBO:0000247" id="M_MAM01806r" name="farnesyl-PP" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C15H25O7P2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01806r">
+            <rdf:Description rdf:about="#M_MAM01806r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/frdp"/>
@@ -92415,10 +92467,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03577c" sboTerm="SBO:0000247" id="MAM03577c" name="Ley Glycolipid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C56H99N2O30RCO">
+      <species metaid="M_MAM03577c" sboTerm="SBO:0000247" id="M_MAM03577c" name="Ley Glycolipid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C56H99N2O30RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03577c">
+            <rdf:Description rdf:about="#M_MAM03577c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/fucfuc12gal14acglcgalgluside_hs"/>
@@ -92430,10 +92482,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03577g" sboTerm="SBO:0000247" id="MAM03577g" name="Ley Glycolipid" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C56H99N2O30RCO">
+      <species metaid="M_MAM03577g" sboTerm="SBO:0000247" id="M_MAM03577g" name="Ley Glycolipid" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C56H99N2O30RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03577g">
+            <rdf:Description rdf:about="#M_MAM03577g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/fucfuc12gal14acglcgalgluside_hs"/>
@@ -92445,10 +92497,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03578c" sboTerm="SBO:0000247" id="MAM03578c" name="Leb Glycolipid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C56H99N2O30RCO">
+      <species metaid="M_MAM03578c" sboTerm="SBO:0000247" id="M_MAM03578c" name="Leb Glycolipid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C56H99N2O30RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03578c">
+            <rdf:Description rdf:about="#M_MAM03578c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/fucfucgalacglcgalgluside_hs"/>
@@ -92460,10 +92512,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03578g" sboTerm="SBO:0000247" id="MAM03578g" name="Leb Glycolipid" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C56H99N2O30RCO">
+      <species metaid="M_MAM03578g" sboTerm="SBO:0000247" id="M_MAM03578g" name="Leb Glycolipid" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C56H99N2O30RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03578g">
+            <rdf:Description rdf:about="#M_MAM03578g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/fucfucgalacglcgalgluside_hs"/>
@@ -92475,10 +92527,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03586l" sboTerm="SBO:0000247" id="MAM03586l" name="Galactosyl Glucosyl Ceramide" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C30H56NO12RCO">
+      <species metaid="M_MAM03586l" sboTerm="SBO:0000247" id="M_MAM03586l" name="Galactosyl Glucosyl Ceramide" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C30H56NO12RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03586l">
+            <rdf:Description rdf:about="#M_MAM03586l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/galgluside_hs"/>
@@ -92490,10 +92542,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03395g" sboTerm="SBO:0000247" id="MAM03395g" name="Protein-Linked Serine Or Threonine Residue (O-Glycosylation Site)" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="XH">
+      <species metaid="M_MAM03395g" sboTerm="SBO:0000247" id="M_MAM03395g" name="Protein-Linked Serine Or Threonine Residue (O-Glycosylation Site)" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="XH">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03395g">
+            <rdf:Description rdf:about="#M_MAM03395g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/Ser_Thr"/>
@@ -92505,10 +92557,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00789m" sboTerm="SBO:0000247" id="MAM00789m" name="3-hydroxy-N6,N6,N6-trimethyl-L-lysine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H20N2O3">
+      <species metaid="M_MAM00789m" sboTerm="SBO:0000247" id="M_MAM00789m" name="3-hydroxy-N6,N6,N6-trimethyl-L-lysine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H20N2O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00789m">
+            <rdf:Description rdf:about="#M_MAM00789m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/3htmelys"/>
@@ -92524,10 +92576,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01034m" sboTerm="SBO:0000247" id="MAM01034m" name="4-trimethylammoniobutanal" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C7H16NO">
+      <species metaid="M_MAM01034m" sboTerm="SBO:0000247" id="M_MAM01034m" name="4-trimethylammoniobutanal" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C7H16NO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01034m">
+            <rdf:Description rdf:about="#M_MAM01034m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/4tmeabut"/>
@@ -92544,10 +92596,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01685m" sboTerm="SBO:0000247" id="MAM01685m" name="D-glucurono-6,3-lactone" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H8O6">
+      <species metaid="M_MAM01685m" sboTerm="SBO:0000247" id="M_MAM01685m" name="D-glucurono-6,3-lactone" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H8O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01685m">
+            <rdf:Description rdf:about="#M_MAM01685m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/glac"/>
@@ -92565,10 +92617,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01681m" sboTerm="SBO:0000247" id="MAM01681m" name="D-glucarate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H8O8">
+      <species metaid="M_MAM01681m" sboTerm="SBO:0000247" id="M_MAM01681m" name="D-glucarate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H8O8">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01681m">
+            <rdf:Description rdf:about="#M_MAM01681m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/glcr"/>
@@ -92584,10 +92636,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03620c" sboTerm="SBO:0000247" id="MAM03620c" name="(S)-Glycerate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H5O4">
+      <species metaid="M_MAM03620c" sboTerm="SBO:0000247" id="M_MAM03620c" name="(S)-Glycerate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H5O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03620c">
+            <rdf:Description rdf:about="#M_MAM03620c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/pubchem.compound/6326776"/>
@@ -92598,10 +92650,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03748r" sboTerm="SBO:0000247" id="MAM03748r" name="Mannosyl-3-(Phosphoethanolaminyl-Mannosyl)-Glucosaminyl-Acylphosphatidylinositol (M4A)" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C63H116N4O47P4R2">
+      <species metaid="M_MAM03748r" sboTerm="SBO:0000247" id="M_MAM03748r" name="Mannosyl-3-(Phosphoethanolaminyl-Mannosyl)-Glucosaminyl-Acylphosphatidylinositol (M4A)" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C63H116N4O47P4R2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03748r">
+            <rdf:Description rdf:about="#M_MAM03748r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/m_em_3gacpail"/>
@@ -92613,10 +92665,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02110m" sboTerm="SBO:0000247" id="MAM02110m" name="hexacosanoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C47H82N7O17P3S">
+      <species metaid="M_MAM02110m" sboTerm="SBO:0000247" id="M_MAM02110m" name="hexacosanoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C47H82N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02110m">
+            <rdf:Description rdf:about="#M_MAM02110m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hexccoa"/>
@@ -92631,10 +92683,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02109m" sboTerm="SBO:0000247" id="MAM02109m" name="hexacosanoylcarnitine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C33H65NO4">
+      <species metaid="M_MAM02109m" sboTerm="SBO:0000247" id="M_MAM02109m" name="hexacosanoylcarnitine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C33H65NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02109m">
+            <rdf:Description rdf:about="#M_MAM02109m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hexccrn"/>
@@ -92649,10 +92701,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02131r" sboTerm="SBO:0000247" id="MAM02131r" name="HMG-CoA" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C27H39N7O20P3S">
+      <species metaid="M_MAM02131r" sboTerm="SBO:0000247" id="M_MAM02131r" name="HMG-CoA" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C27H39N7O20P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02131r">
+            <rdf:Description rdf:about="#M_MAM02131r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hmgcoa"/>
@@ -92668,10 +92720,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00167r" sboTerm="SBO:0000247" id="MAM00167r" name="(R)-mevalonate" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H11O4">
+      <species metaid="M_MAM00167r" sboTerm="SBO:0000247" id="M_MAM00167r" name="(R)-mevalonate" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H11O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00167r">
+            <rdf:Description rdf:about="#M_MAM00167r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/mev__R"/>
@@ -92687,10 +92739,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02159l" sboTerm="SBO:0000247" id="MAM02159l" name="hypoxanthine" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H4N4O">
+      <species metaid="M_MAM02159l" sboTerm="SBO:0000247" id="M_MAM02159l" name="hypoxanthine" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H4N4O">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02159l">
+            <rdf:Description rdf:about="#M_MAM02159l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hxan"/>
@@ -92707,10 +92759,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02170l" sboTerm="SBO:0000247" id="MAM02170l" name="inosine" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H12N4O5">
+      <species metaid="M_MAM02170l" sboTerm="SBO:0000247" id="M_MAM02170l" name="inosine" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H12N4O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02170l">
+            <rdf:Description rdf:about="#M_MAM02170l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ins"/>
@@ -92727,10 +92779,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02187r" sboTerm="SBO:0000247" id="MAM02187r" name="isopentenyl-pPP" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C5H9O7P2">
+      <species metaid="M_MAM02187r" sboTerm="SBO:0000247" id="M_MAM02187r" name="isopentenyl-pPP" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C5H9O7P2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02187r">
+            <rdf:Description rdf:about="#M_MAM02187r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ipdp"/>
@@ -92746,10 +92798,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01715m" sboTerm="SBO:0000247" id="MAM01715m" name="D-lactaldehyde" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H6O2">
+      <species metaid="M_MAM01715m" sboTerm="SBO:0000247" id="M_MAM01715m" name="D-lactaldehyde" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H6O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01715m">
+            <rdf:Description rdf:about="#M_MAM01715m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/lald__D"/>
@@ -92765,10 +92817,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02971m" sboTerm="SBO:0000247" id="MAM02971m" name="tetracosanoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C45H78N7O17P3S">
+      <species metaid="M_MAM02971m" sboTerm="SBO:0000247" id="M_MAM02971m" name="tetracosanoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C45H78N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02971m">
+            <rdf:Description rdf:about="#M_MAM02971m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/lgnccoa"/>
@@ -92786,10 +92838,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02970m" sboTerm="SBO:0000247" id="MAM02970m" name="tetracosanoylcarnitine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C31H61NO4">
+      <species metaid="M_MAM02970m" sboTerm="SBO:0000247" id="M_MAM02970m" name="tetracosanoylcarnitine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C31H61NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02970m">
+            <rdf:Description rdf:about="#M_MAM02970m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/lgnccrn"/>
@@ -92801,10 +92853,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03727c" sboTerm="SBO:0000247" id="MAM03727c" name="Alpha-Linolenyl Carnitine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H43NO4">
+      <species metaid="M_MAM03727c" sboTerm="SBO:0000247" id="M_MAM03727c" name="Alpha-Linolenyl Carnitine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H43NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03727c">
+            <rdf:Description rdf:about="#M_MAM03727c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/lnlncacrn"/>
@@ -92818,10 +92870,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03727m" sboTerm="SBO:0000247" id="MAM03727m" name="Alpha-Linolenyl Carnitine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H43NO4">
+      <species metaid="M_MAM03727m" sboTerm="SBO:0000247" id="M_MAM03727m" name="Alpha-Linolenyl Carnitine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H43NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03727m">
+            <rdf:Description rdf:about="#M_MAM03727m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/lnlncacrn"/>
@@ -92835,10 +92887,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02336r" sboTerm="SBO:0000247" id="MAM02336r" name="lanosterol" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C30H50O">
+      <species metaid="M_MAM02336r" sboTerm="SBO:0000247" id="M_MAM02336r" name="lanosterol" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C30H50O">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02336r">
+            <rdf:Description rdf:about="#M_MAM02336r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/lanost"/>
@@ -92856,10 +92908,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03315c" sboTerm="SBO:0000247" id="MAM03315c" name="Fatty Acid 9-Cis-Retinol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H29O2R">
+      <species metaid="M_MAM03315c" sboTerm="SBO:0000247" id="M_MAM03315c" name="Fatty Acid 9-Cis-Retinol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H29O2R">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03315c">
+            <rdf:Description rdf:about="#M_MAM03315c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/9_cis_retfa"/>
@@ -92871,10 +92923,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03749r" sboTerm="SBO:0000247" id="MAM03749r" name="Mannosyl-3-(Phosphoethanolaminyl-Mannosyl)-Glucosaminyl-Acylphosphatidylinositol (M4A))" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C63H116N4O47P4R2">
+      <species metaid="M_MAM03749r" sboTerm="SBO:0000247" id="M_MAM03749r" name="Mannosyl-3-(Phosphoethanolaminyl-Mannosyl)-Glucosaminyl-Acylphosphatidylinositol (M4A))" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C63H116N4O47P4R2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03749r">
+            <rdf:Description rdf:about="#M_MAM03749r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/m_em_3gacpail_hs"/>
@@ -92886,10 +92938,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03750r" sboTerm="SBO:0000247" id="MAM03750r" name="Mannosyl-3-(Phosphoethanolaminyl-Mannosyl)-Glucosaminyl-Acylphosphatidylinositol-Protein (M4A)" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C63H116N4O47P4R2X">
+      <species metaid="M_MAM03750r" sboTerm="SBO:0000247" id="M_MAM03750r" name="Mannosyl-3-(Phosphoethanolaminyl-Mannosyl)-Glucosaminyl-Acylphosphatidylinositol-Protein (M4A)" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C63H116N4O47P4R2X">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03750r">
+            <rdf:Description rdf:about="#M_MAM03750r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/m_em_3gacpail_prot_hs"/>
@@ -92901,10 +92953,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00184m" sboTerm="SBO:0000247" id="MAM00184m" name="[ACP]" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C11H21N2O7PRS">
+      <species metaid="M_MAM00184m" sboTerm="SBO:0000247" id="M_MAM00184m" name="[ACP]" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C11H21N2O7PRS">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00184m">
+            <rdf:Description rdf:about="#M_MAM00184m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ACP"/>
@@ -92917,10 +92969,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02442m" sboTerm="SBO:0000247" id="MAM02442m" name="malonyl-[ACP]" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C14H22N2O10PRS">
+      <species metaid="M_MAM02442m" sboTerm="SBO:0000247" id="M_MAM02442m" name="malonyl-[ACP]" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C14H22N2O10PRS">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02442m">
+            <rdf:Description rdf:about="#M_MAM02442m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/malACP"/>
@@ -92933,10 +92985,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00165x" sboTerm="SBO:0000247" id="MAM00165x" name="(R)-5-phosphomevalonate" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C6H10O7P">
+      <species metaid="M_MAM00165x" sboTerm="SBO:0000247" id="M_MAM00165x" name="(R)-5-phosphomevalonate" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C6H10O7P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00165x">
+            <rdf:Description rdf:about="#M_MAM00165x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/5pmev"/>
@@ -92951,10 +93003,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02514m" sboTerm="SBO:0000247" id="MAM02514m" name="N4-acetylaminobutanal" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H11NO2">
+      <species metaid="M_MAM02514m" sboTerm="SBO:0000247" id="M_MAM02514m" name="N4-acetylaminobutanal" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H11NO2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02514m">
+            <rdf:Description rdf:about="#M_MAM02514m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/n4abutn"/>
@@ -92971,10 +93023,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00952m" sboTerm="SBO:0000247" id="MAM00952m" name="4-acetamidobutanoate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H10NO3">
+      <species metaid="M_MAM00952m" sboTerm="SBO:0000247" id="M_MAM00952m" name="4-acetamidobutanoate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H10NO3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00952m">
+            <rdf:Description rdf:about="#M_MAM00952m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/4aabutn"/>
@@ -92990,10 +93042,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01646m" sboTerm="SBO:0000247" id="MAM01646m" name="deamido-NAD" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C21H24N6O15P2">
+      <species metaid="M_MAM01646m" sboTerm="SBO:0000247" id="M_MAM01646m" name="deamido-NAD" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C21H24N6O15P2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01646m">
+            <rdf:Description rdf:about="#M_MAM01646m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dnad"/>
@@ -93008,10 +93060,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02585m" sboTerm="SBO:0000247" id="MAM02585m" name="nicotinate ribonucleotide" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C11H12NO9P">
+      <species metaid="M_MAM02585m" sboTerm="SBO:0000247" id="M_MAM02585m" name="nicotinate ribonucleotide" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C11H12NO9P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02585m">
+            <rdf:Description rdf:about="#M_MAM02585m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/nicrnt"/>
@@ -93026,10 +93078,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00025m" sboTerm="SBO:0000247" id="MAM00025m" name="(15Z)-tetracosenoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C45H76N7O17P3S">
+      <species metaid="M_MAM00025m" sboTerm="SBO:0000247" id="M_MAM00025m" name="(15Z)-tetracosenoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C45H76N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00025m">
+            <rdf:Description rdf:about="#M_MAM00025m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/nrvnccoa"/>
@@ -93045,10 +93097,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00024m" sboTerm="SBO:0000247" id="MAM00024m" name="(15Z)-tetracosenoylcarnitine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C31H59NO4">
+      <species metaid="M_MAM00024m" sboTerm="SBO:0000247" id="M_MAM00024m" name="(15Z)-tetracosenoylcarnitine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C31H59NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00024m">
+            <rdf:Description rdf:about="#M_MAM00024m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/nrvnccrn"/>
@@ -93061,10 +93113,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01446r" sboTerm="SBO:0000247" id="MAM01446r" name="cholest-5-ene-3beta,7alpha,24(S)-triol" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H46O3">
+      <species metaid="M_MAM01446r" sboTerm="SBO:0000247" id="M_MAM01446r" name="cholest-5-ene-3beta,7alpha,24(S)-triol" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H46O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01446r">
+            <rdf:Description rdf:about="#M_MAM01446r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/xoltri24"/>
@@ -93080,10 +93132,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00610r" sboTerm="SBO:0000247" id="MAM00610r" name="24-hydroxycholesterol" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H46O2">
+      <species metaid="M_MAM00610r" sboTerm="SBO:0000247" id="M_MAM00610r" name="24-hydroxycholesterol" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H46O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00610r">
+            <rdf:Description rdf:about="#M_MAM00610r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/xol24oh"/>
@@ -93102,10 +93154,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01448r" sboTerm="SBO:0000247" id="MAM01448r" name="cholest-5-ene-3beta,7alpha,27-triol" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H46O3">
+      <species metaid="M_MAM01448r" sboTerm="SBO:0000247" id="M_MAM01448r" name="cholest-5-ene-3beta,7alpha,27-triol" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H46O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01448r">
+            <rdf:Description rdf:about="#M_MAM01448r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/xoltri27"/>
@@ -93125,10 +93177,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00592m" sboTerm="SBO:0000247" id="MAM00592m" name="20-hydroxycholesterol" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H46O2">
+      <species metaid="M_MAM00592m" sboTerm="SBO:0000247" id="M_MAM00592m" name="20-hydroxycholesterol" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H46O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00592m">
+            <rdf:Description rdf:about="#M_MAM00592m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/20ahchsterol"/>
@@ -93147,10 +93199,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02733g" sboTerm="SBO:0000247" id="MAM02733g" name="phosphatidate-LD-TAG pool" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C5H5O8PR2">
+      <species metaid="M_MAM02733g" sboTerm="SBO:0000247" id="M_MAM02733g" name="phosphatidate-LD-TAG pool" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C5H5O8PR2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02733g">
+            <rdf:Description rdf:about="#M_MAM02733g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pa_hs"/>
@@ -93165,10 +93217,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02684m" sboTerm="SBO:0000247" id="MAM02684m" name="PC-LD pool" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H18NO8PR2">
+      <species metaid="M_MAM02684m" sboTerm="SBO:0000247" id="M_MAM02684m" name="PC-LD pool" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H18NO8PR2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02684m">
+            <rdf:Description rdf:about="#M_MAM02684m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pchol_hs"/>
@@ -93182,10 +93234,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03850r" sboTerm="SBO:0000247" id="MAM03850r" name="Pseudoecgonyl Coenzyme A" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C30H46N8O18P3S">
+      <species metaid="M_MAM03850r" sboTerm="SBO:0000247" id="M_MAM03850r" name="Pseudoecgonyl Coenzyme A" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C30H46N8O18P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03850r">
+            <rdf:Description rdf:about="#M_MAM03850r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pecgoncoa"/>
@@ -93198,10 +93250,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03887x" sboTerm="SBO:0000247" id="MAM03887x" name="Pristanoyl Coenzyme A" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C40H68N7O17P3S">
+      <species metaid="M_MAM03887x" sboTerm="SBO:0000247" id="M_MAM03887x" name="Pristanoyl Coenzyme A" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C40H68N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03887x">
+            <rdf:Description rdf:about="#M_MAM03887x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pristcoa"/>
@@ -93215,10 +93267,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02717c" sboTerm="SBO:0000247" id="MAM02717c" name="PGP-CL pool" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C8H11O13P2R2">
+      <species metaid="M_MAM02717c" sboTerm="SBO:0000247" id="M_MAM02717c" name="PGP-CL pool" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C8H11O13P2R2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02717c">
+            <rdf:Description rdf:about="#M_MAM02717c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pgp_hs"/>
@@ -93232,10 +93284,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02725m" sboTerm="SBO:0000247" id="MAM02725m" name="phenylpyruvate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C9H7O3">
+      <species metaid="M_MAM02725m" sboTerm="SBO:0000247" id="M_MAM02725m" name="phenylpyruvate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C9H7O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02725m">
+            <rdf:Description rdf:about="#M_MAM02725m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/phpyr"/>
@@ -93252,10 +93304,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00553r" sboTerm="SBO:0000247" id="MAM00553r" name="1-phosphatidyl-1D-myo-inositol-4-phosphate" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C11H15O16P2R2">
+      <species metaid="M_MAM00553r" sboTerm="SBO:0000247" id="M_MAM00553r" name="1-phosphatidyl-1D-myo-inositol-4-phosphate" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C11H15O16P2R2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00553r">
+            <rdf:Description rdf:about="#M_MAM00553r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pail4p_hs"/>
@@ -93269,10 +93321,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00551r" sboTerm="SBO:0000247" id="MAM00551r" name="1-phosphatidyl-1D-myo-inositol-3,4-bisphosphate" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C11H14O19P3R2">
+      <species metaid="M_MAM00551r" sboTerm="SBO:0000247" id="M_MAM00551r" name="1-phosphatidyl-1D-myo-inositol-3,4-bisphosphate" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C11H14O19P3R2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00551r">
+            <rdf:Description rdf:about="#M_MAM00551r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pail34p_hs"/>
@@ -93286,10 +93338,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02680m" sboTerm="SBO:0000247" id="MAM02680m" name="pantothenate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C9H16NO5">
+      <species metaid="M_MAM02680m" sboTerm="SBO:0000247" id="M_MAM02680m" name="pantothenate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C9H16NO5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02680m">
+            <rdf:Description rdf:about="#M_MAM02680m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pnto__R"/>
@@ -93305,10 +93357,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01636m" sboTerm="SBO:0000247" id="MAM01636m" name="D-4-phosphopantothenate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C9H15NO8P">
+      <species metaid="M_MAM01636m" sboTerm="SBO:0000247" id="M_MAM01636m" name="D-4-phosphopantothenate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C9H15NO8P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01636m">
+            <rdf:Description rdf:about="#M_MAM01636m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/4ppan"/>
@@ -93323,10 +93375,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01306r" sboTerm="SBO:0000247" id="MAM01306r" name="AKG" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C5H4O5">
+      <species metaid="M_MAM01306r" sboTerm="SBO:0000247" id="M_MAM01306r" name="AKG" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C5H4O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01306r">
+            <rdf:Description rdf:about="#M_MAM01306r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/akg"/>
@@ -93342,10 +93394,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02943r" sboTerm="SBO:0000247" id="MAM02943r" name="succinate" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C4H4O4">
+      <species metaid="M_MAM02943r" sboTerm="SBO:0000247" id="M_MAM02943r" name="succinate" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C4H4O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02943r">
+            <rdf:Description rdf:about="#M_MAM02943r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/succ"/>
@@ -93362,10 +93414,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02770r" sboTerm="SBO:0000247" id="MAM02770r" name="proline" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H9NO2">
+      <species metaid="M_MAM02770r" sboTerm="SBO:0000247" id="M_MAM02770r" name="proline" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H9NO2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02770r">
+            <rdf:Description rdf:about="#M_MAM02770r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pro__L"/>
@@ -93382,10 +93434,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03037r" sboTerm="SBO:0000247" id="MAM03037r" name="trans-4-hydroxy-L-proline" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H9NO3">
+      <species metaid="M_MAM03037r" sboTerm="SBO:0000247" id="M_MAM03037r" name="trans-4-hydroxy-L-proline" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H9NO3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03037r">
+            <rdf:Description rdf:about="#M_MAM03037r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/4hpro_LT"/>
@@ -93402,10 +93454,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02808g" sboTerm="SBO:0000247" id="MAM02808g" name="PS-LD pool" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C8H11NO10PR2">
+      <species metaid="M_MAM02808g" sboTerm="SBO:0000247" id="M_MAM02808g" name="PS-LD pool" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C8H11NO10PR2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02808g">
+            <rdf:Description rdf:about="#M_MAM02808g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ps_hs"/>
@@ -93421,10 +93473,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02808m" sboTerm="SBO:0000247" id="MAM02808m" name="PS-LD pool" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C8H11NO10PR2">
+      <species metaid="M_MAM02808m" sboTerm="SBO:0000247" id="M_MAM02808m" name="PS-LD pool" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C8H11NO10PR2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02808m">
+            <rdf:Description rdf:about="#M_MAM02808m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ps_hs"/>
@@ -93440,10 +93492,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03884x" sboTerm="SBO:0000247" id="MAM03884x" name="Phytanate" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H39O2">
+      <species metaid="M_MAM03884x" sboTerm="SBO:0000247" id="M_MAM03884x" name="Phytanate" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H39O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03884x">
+            <rdf:Description rdf:about="#M_MAM03884x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/phyt"/>
@@ -93459,10 +93511,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02816m" sboTerm="SBO:0000247" id="MAM02816m" name="pyridoxamine-phosphate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C8H12N2O5P">
+      <species metaid="M_MAM02816m" sboTerm="SBO:0000247" id="M_MAM02816m" name="pyridoxamine-phosphate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C8H12N2O5P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02816m">
+            <rdf:Description rdf:about="#M_MAM02816m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pyam5p"/>
@@ -93477,10 +93529,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02814m" sboTerm="SBO:0000247" id="MAM02814m" name="pyridoxal-phosphate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C8H8NO6P">
+      <species metaid="M_MAM02814m" sboTerm="SBO:0000247" id="M_MAM02814m" name="pyridoxal-phosphate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C8H8NO6P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02814m">
+            <rdf:Description rdf:about="#M_MAM02814m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pydx5p"/>
@@ -93496,10 +93548,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02833n" sboTerm="SBO:0000247" id="MAM02833n" name="retinoate" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H27O2">
+      <species metaid="M_MAM02833n" sboTerm="SBO:0000247" id="M_MAM02833n" name="retinoate" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H27O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02833n">
+            <rdf:Description rdf:about="#M_MAM02833n">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/retn"/>
@@ -93515,10 +93567,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM04081c" sboTerm="SBO:0000247" id="MAM04081c" name="Cholesterol Ester" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H45XCO2">
+      <species metaid="M_MAM04081c" sboTerm="SBO:0000247" id="M_MAM04081c" name="Cholesterol Ester" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H45XCO2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM04081c">
+            <rdf:Description rdf:about="#M_MAM04081c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/xolest_hs"/>
@@ -93530,10 +93582,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02933r" sboTerm="SBO:0000247" id="MAM02933r" name="squalene" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C30H50">
+      <species metaid="M_MAM02933r" sboTerm="SBO:0000247" id="M_MAM02933r" name="squalene" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C30H50">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02933r">
+            <rdf:Description rdf:about="#M_MAM02933r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/sql"/>
@@ -93550,10 +93602,10 @@
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       </species>
-      <species metaid="MAM00134m" sboTerm="SBO:0000247" id="MAM00134m" name="(9Z,12Z,15Z,18Z,21Z)-tetracosapentaenoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C45H68N7O17P3S">
+      <species metaid="M_MAM00134m" sboTerm="SBO:0000247" id="M_MAM00134m" name="(9Z,12Z,15Z,18Z,21Z)-tetracosapentaenoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C45H68N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00134m">
+            <rdf:Description rdf:about="#M_MAM00134m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/tetpent3coa"/>
@@ -93570,10 +93622,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00133m" sboTerm="SBO:0000247" id="MAM00133m" name="(9Z,12Z,15Z,18Z,21Z)-tetracosapentaenoylcarnitine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C31H51NO4">
+      <species metaid="M_MAM00133m" sboTerm="SBO:0000247" id="M_MAM00133m" name="(9Z,12Z,15Z,18Z,21Z)-tetracosapentaenoylcarnitine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C31H51NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00133m">
+            <rdf:Description rdf:about="#M_MAM00133m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/tetpent3crn"/>
@@ -93586,10 +93638,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00110m" sboTerm="SBO:0000247" id="MAM00110m" name="(6Z,9Z,12Z,15Z,18Z)-tetracosapentaenoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C45H68N7O17P3S">
+      <species metaid="M_MAM00110m" sboTerm="SBO:0000247" id="M_MAM00110m" name="(6Z,9Z,12Z,15Z,18Z)-tetracosapentaenoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C45H68N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00110m">
+            <rdf:Description rdf:about="#M_MAM00110m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/tetpent6coa"/>
@@ -93605,10 +93657,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00109m" sboTerm="SBO:0000247" id="MAM00109m" name="(6Z,9Z,12Z,15Z,18Z)-tetracosapentaenoylcarnitine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C31H51NO4">
+      <species metaid="M_MAM00109m" sboTerm="SBO:0000247" id="M_MAM00109m" name="(6Z,9Z,12Z,15Z,18Z)-tetracosapentaenoylcarnitine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C31H51NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00109m">
+            <rdf:Description rdf:about="#M_MAM00109m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/tetpent6crn"/>
@@ -93621,10 +93673,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00131m" sboTerm="SBO:0000247" id="MAM00131m" name="(9Z,12Z,15Z,18Z)-tetracosatetraenoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C45H70N7O17P3S">
+      <species metaid="M_MAM00131m" sboTerm="SBO:0000247" id="M_MAM00131m" name="(9Z,12Z,15Z,18Z)-tetracosatetraenoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C45H70N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00131m">
+            <rdf:Description rdf:about="#M_MAM00131m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/tettet6coa"/>
@@ -93642,10 +93694,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00130m" sboTerm="SBO:0000247" id="MAM00130m" name="(9Z,12Z,15Z,18Z)-tetracosatetraenoylcarnitine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C31H53NO4">
+      <species metaid="M_MAM00130m" sboTerm="SBO:0000247" id="M_MAM00130m" name="(9Z,12Z,15Z,18Z)-tetracosatetraenoylcarnitine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C31H53NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00130m">
+            <rdf:Description rdf:about="#M_MAM00130m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/tettet6crn"/>
@@ -93658,10 +93710,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02982m" sboTerm="SBO:0000247" id="MAM02982m" name="thiamin" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C12H17N4OS">
+      <species metaid="M_MAM02982m" sboTerm="SBO:0000247" id="M_MAM02982m" name="thiamin" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C12H17N4OS">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02982m">
+            <rdf:Description rdf:about="#M_MAM02982m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/thm"/>
@@ -93678,10 +93730,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03103c" sboTerm="SBO:0000247" id="MAM03103c" name="ubiquinone" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C59H90O4">
+      <species metaid="M_MAM03103c" sboTerm="SBO:0000247" id="M_MAM03103c" name="ubiquinone" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C59H90O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03103c">
+            <rdf:Description rdf:about="#M_MAM03103c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/q10"/>
@@ -93697,10 +93749,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03102c" sboTerm="SBO:0000247" id="MAM03102c" name="ubiquinol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C59H92O4">
+      <species metaid="M_MAM03102c" sboTerm="SBO:0000247" id="M_MAM03102c" name="ubiquinol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C59H92O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03102c">
+            <rdf:Description rdf:about="#M_MAM03102c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/q10h2"/>
@@ -93716,10 +93768,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03039c" sboTerm="SBO:0000247" id="MAM03039c" name="trehalose" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C12H22O11">
+      <species metaid="M_MAM03039c" sboTerm="SBO:0000247" id="M_MAM03039c" name="trehalose" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C12H22O11">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03039c">
+            <rdf:Description rdf:about="#M_MAM03039c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/tre"/>
@@ -93736,10 +93788,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01095r" sboTerm="SBO:0000247" id="MAM01095r" name="5beta-cholestane-3alpha,7alpha-diol" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H48O2">
+      <species metaid="M_MAM01095r" sboTerm="SBO:0000247" id="M_MAM01095r" name="5beta-cholestane-3alpha,7alpha-diol" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H48O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01095r">
+            <rdf:Description rdf:about="#M_MAM01095r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/xol7ah2"/>
@@ -93758,10 +93810,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01178m" sboTerm="SBO:0000247" id="MAM01178m" name="7alpha,12alpha-dihydroxycholest-4-en-3-one" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H44O3">
+      <species metaid="M_MAM01178m" sboTerm="SBO:0000247" id="M_MAM01178m" name="7alpha,12alpha-dihydroxycholest-4-en-3-one" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H44O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01178m">
+            <rdf:Description rdf:about="#M_MAM01178m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/xoldiolone"/>
@@ -93779,10 +93831,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01447c" sboTerm="SBO:0000247" id="MAM01447c" name="cholest-5-ene-3beta,7alpha,25-triol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H46O3">
+      <species metaid="M_MAM01447c" sboTerm="SBO:0000247" id="M_MAM01447c" name="cholest-5-ene-3beta,7alpha,25-triol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H46O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01447c">
+            <rdf:Description rdf:about="#M_MAM01447c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/xoltri25"/>
@@ -93798,10 +93850,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01155e" sboTerm="SBO:0000247" id="MAM01155e" name="6-[(1S,2R)-1,2-dihydroxy-3-triphosphooxypropyl]-7,8-dihydropterin" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C9H12N5O13P3">
+      <species metaid="M_MAM01155e" sboTerm="SBO:0000247" id="M_MAM01155e" name="6-[(1S,2R)-1,2-dihydroxy-3-triphosphooxypropyl]-7,8-dihydropterin" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C9H12N5O13P3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01155e">
+            <rdf:Description rdf:about="#M_MAM01155e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ahdt"/>
@@ -93816,10 +93868,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01686e" sboTerm="SBO:0000247" id="MAM01686e" name="dGMP" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C10H12N5O7P">
+      <species metaid="M_MAM01686e" sboTerm="SBO:0000247" id="M_MAM01686e" name="dGMP" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C10H12N5O7P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01686e">
+            <rdf:Description rdf:about="#M_MAM01686e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dgmp"/>
@@ -93834,10 +93886,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01688e" sboTerm="SBO:0000247" id="MAM01688e" name="dGTP" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C10H12N5O13P3">
+      <species metaid="M_MAM01688e" sboTerm="SBO:0000247" id="M_MAM01688e" name="dGTP" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C10H12N5O13P3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01688e">
+            <rdf:Description rdf:about="#M_MAM01688e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dgtp"/>
@@ -93853,10 +93905,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01752e" sboTerm="SBO:0000247" id="MAM01752e" name="dTMP" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C10H13N2O8P">
+      <species metaid="M_MAM01752e" sboTerm="SBO:0000247" id="M_MAM01752e" name="dTMP" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C10H13N2O8P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01752e">
+            <rdf:Description rdf:about="#M_MAM01752e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dtmp"/>
@@ -93872,10 +93924,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01753e" sboTerm="SBO:0000247" id="MAM01753e" name="dTTP" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C10H13N2O14P3">
+      <species metaid="M_MAM01753e" sboTerm="SBO:0000247" id="M_MAM01753e" name="dTTP" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C10H13N2O14P3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01753e">
+            <rdf:Description rdf:about="#M_MAM01753e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dttp"/>
@@ -93891,10 +93943,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01831e" sboTerm="SBO:0000247" id="MAM01831e" name="formaldehyde" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="CH2O">
+      <species metaid="M_MAM01831e" sboTerm="SBO:0000247" id="M_MAM01831e" name="formaldehyde" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="CH2O">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01831e">
+            <rdf:Description rdf:about="#M_MAM01831e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/fald"/>
@@ -93911,10 +93963,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01967e" sboTerm="SBO:0000247" id="MAM01967e" name="glucose-1-phosphate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H11O9P">
+      <species metaid="M_MAM01967e" sboTerm="SBO:0000247" id="M_MAM01967e" name="glucose-1-phosphate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H11O9P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01967e">
+            <rdf:Description rdf:about="#M_MAM01967e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/g1p"/>
@@ -93929,10 +93981,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03127e" sboTerm="SBO:0000247" id="MAM03127e" name="uroporphyrinogen I" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-8" fbc:chemicalFormula="C40H36N4O16">
+      <species metaid="M_MAM03127e" sboTerm="SBO:0000247" id="M_MAM03127e" name="uroporphyrinogen I" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-8" fbc:chemicalFormula="C40H36N4O16">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03127e">
+            <rdf:Description rdf:about="#M_MAM03127e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:28766"/>
@@ -93947,10 +93999,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01605e" sboTerm="SBO:0000247" id="MAM01605e" name="coproporphyrinogen I" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C36H40N4O8">
+      <species metaid="M_MAM01605e" sboTerm="SBO:0000247" id="M_MAM01605e" name="coproporphyrinogen I" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C36H40N4O8">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01605e">
+            <rdf:Description rdf:about="#M_MAM01605e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/cpppg1"/>
@@ -93966,10 +94018,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02011e" sboTerm="SBO:0000247" id="MAM02011e" name="GM2" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C50H85N3O26R">
+      <species metaid="M_MAM02011e" sboTerm="SBO:0000247" id="M_MAM02011e" name="GM2" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C50H85N3O26R">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02011e">
+            <rdf:Description rdf:about="#M_MAM02011e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/gm2_hs"/>
@@ -93986,10 +94038,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02008e" sboTerm="SBO:0000247" id="MAM02008e" name="GM1" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C56H95N3O31R">
+      <species metaid="M_MAM02008e" sboTerm="SBO:0000247" id="M_MAM02008e" name="GM1" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C56H95N3O31R">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02008e">
+            <rdf:Description rdf:about="#M_MAM02008e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/gm1_hs"/>
@@ -94005,10 +94057,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03108e" sboTerm="SBO:0000247" id="MAM03108e" name="UDP-glucose" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C15H22N2O17P2">
+      <species metaid="M_MAM03108e" sboTerm="SBO:0000247" id="M_MAM03108e" name="UDP-glucose" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C15H22N2O17P2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03108e">
+            <rdf:Description rdf:about="#M_MAM03108e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/udpg"/>
@@ -94023,10 +94075,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02411x" sboTerm="SBO:0000247" id="MAM02411x" name="L-palmitoylcarnitine" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H45NO4">
+      <species metaid="M_MAM02411x" sboTerm="SBO:0000247" id="M_MAM02411x" name="L-palmitoylcarnitine" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H45NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02411x">
+            <rdf:Description rdf:about="#M_MAM02411x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pmtcrn"/>
@@ -94045,10 +94097,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02388x" sboTerm="SBO:0000247" id="MAM02388x" name="linoleic-carnitine" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H45NO4">
+      <species metaid="M_MAM02388x" sboTerm="SBO:0000247" id="M_MAM02388x" name="linoleic-carnitine" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H45NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02388x">
+            <rdf:Description rdf:about="#M_MAM02388x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/lnlccrn"/>
@@ -94062,10 +94114,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01363x" sboTerm="SBO:0000247" id="MAM01363x" name="arachidonyl-carnitine" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H45NO4">
+      <species metaid="M_MAM01363x" sboTerm="SBO:0000247" id="M_MAM01363x" name="arachidonyl-carnitine" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H45NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01363x">
+            <rdf:Description rdf:about="#M_MAM01363x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/arachdcrn"/>
@@ -94077,10 +94129,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01747e" sboTerm="SBO:0000247" id="MAM01747e" name="dTDP" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C10H13N2O11P2">
+      <species metaid="M_MAM01747e" sboTerm="SBO:0000247" id="M_MAM01747e" name="dTDP" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C10H13N2O11P2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01747e">
+            <rdf:Description rdf:about="#M_MAM01747e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dtdp"/>
@@ -94096,10 +94148,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00755c" sboTerm="SBO:0000247" id="MAM00755c" name="3alpha,7alpha-dihydroxy-5beta-cholest-24-enoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C48H74N7O19P3S">
+      <species metaid="M_MAM00755c" sboTerm="SBO:0000247" id="M_MAM00755c" name="3alpha,7alpha-dihydroxy-5beta-cholest-24-enoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C48H74N7O19P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00755c">
+            <rdf:Description rdf:about="#M_MAM00755c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dhcholoylcoa"/>
@@ -94116,10 +94168,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03318r" sboTerm="SBO:0000247" id="MAM03318r" name="Chenodeoxycholate" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H39O4">
+      <species metaid="M_MAM03318r" sboTerm="SBO:0000247" id="M_MAM03318r" name="Chenodeoxycholate" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H39O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03318r">
+            <rdf:Description rdf:about="#M_MAM03318r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/C02528"/>
@@ -94135,10 +94187,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03318c" sboTerm="SBO:0000247" id="MAM03318c" name="Chenodeoxycholate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H39O4">
+      <species metaid="M_MAM03318c" sboTerm="SBO:0000247" id="M_MAM03318c" name="Chenodeoxycholate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H39O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03318c">
+            <rdf:Description rdf:about="#M_MAM03318c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/C02528"/>
@@ -94154,10 +94206,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00726m" sboTerm="SBO:0000247" id="MAM00726m" name="3,4-dihydroxymandelaldehyde" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H8O4">
+      <species metaid="M_MAM00726m" sboTerm="SBO:0000247" id="M_MAM00726m" name="3,4-dihydroxymandelaldehyde" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H8O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00726m">
+            <rdf:Description rdf:about="#M_MAM00726m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/34dhmald"/>
@@ -94172,10 +94224,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00727m" sboTerm="SBO:0000247" id="MAM00727m" name="3,4-dihydroxymandelate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C8H7O5">
+      <species metaid="M_MAM00727m" sboTerm="SBO:0000247" id="M_MAM00727m" name="3,4-dihydroxymandelate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C8H7O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00727m">
+            <rdf:Description rdf:about="#M_MAM00727m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/34dhoxmand"/>
@@ -94190,10 +94242,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02137m" sboTerm="SBO:0000247" id="MAM02137m" name="homovanillate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C9H9O4">
+      <species metaid="M_MAM02137m" sboTerm="SBO:0000247" id="M_MAM02137m" name="homovanillate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C9H9O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02137m">
+            <rdf:Description rdf:about="#M_MAM02137m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/homoval"/>
@@ -94210,10 +94262,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00818m" sboTerm="SBO:0000247" id="MAM00818m" name="3-methoxy-4-hydroxyphenylacetaldehyde" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H10O3">
+      <species metaid="M_MAM00818m" sboTerm="SBO:0000247" id="M_MAM00818m" name="3-methoxy-4-hydroxyphenylacetaldehyde" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H10O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00818m">
+            <rdf:Description rdf:about="#M_MAM00818m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/3mox4hpac"/>
@@ -94229,10 +94281,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00820m" sboTerm="SBO:0000247" id="MAM00820m" name="3-methoxy-4-hydroxyphenylglycolaldehyde" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H10O4">
+      <species metaid="M_MAM00820m" sboTerm="SBO:0000247" id="M_MAM00820m" name="3-methoxy-4-hydroxyphenylglycolaldehyde" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H10O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00820m">
+            <rdf:Description rdf:about="#M_MAM00820m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/3m4hpga"/>
@@ -94248,10 +94300,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03136m" sboTerm="SBO:0000247" id="MAM03136m" name="vanillylmandelate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C9H9O5">
+      <species metaid="M_MAM03136m" sboTerm="SBO:0000247" id="M_MAM03136m" name="vanillylmandelate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C9H9O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03136m">
+            <rdf:Description rdf:about="#M_MAM03136m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/3mox4hoxm"/>
@@ -94268,10 +94320,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02336x" sboTerm="SBO:0000247" id="MAM02336x" name="lanosterol" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C30H50O">
+      <species metaid="M_MAM02336x" sboTerm="SBO:0000247" id="M_MAM02336x" name="lanosterol" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C30H50O">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02336x">
+            <rdf:Description rdf:about="#M_MAM02336x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/lanost"/>
@@ -94289,10 +94341,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03318e" sboTerm="SBO:0000247" id="MAM03318e" name="Chenodeoxycholate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H39O4">
+      <species metaid="M_MAM03318e" sboTerm="SBO:0000247" id="M_MAM03318e" name="Chenodeoxycholate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H39O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03318e">
+            <rdf:Description rdf:about="#M_MAM03318e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/C02528"/>
@@ -94308,10 +94360,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00755m" sboTerm="SBO:0000247" id="MAM00755m" name="3alpha,7alpha-dihydroxy-5beta-cholest-24-enoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C48H74N7O19P3S">
+      <species metaid="M_MAM00755m" sboTerm="SBO:0000247" id="M_MAM00755m" name="3alpha,7alpha-dihydroxy-5beta-cholest-24-enoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C48H74N7O19P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00755m">
+            <rdf:Description rdf:about="#M_MAM00755m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dhcholoylcoa"/>
@@ -94328,10 +94380,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00968r" sboTerm="SBO:0000247" id="MAM00968r" name="4alpha-methylzymosterol" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C28H46O">
+      <species metaid="M_MAM00968r" sboTerm="SBO:0000247" id="M_MAM00968r" name="4alpha-methylzymosterol" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C28H46O">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00968r">
+            <rdf:Description rdf:about="#M_MAM00968r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C05103"/>
@@ -94345,10 +94397,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00051r" sboTerm="SBO:0000247" id="MAM00051r" name="(2E)-hexadecenoyl-CoA" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C37H60N7O17P3S">
+      <species metaid="M_MAM00051r" sboTerm="SBO:0000247" id="M_MAM00051r" name="(2E)-hexadecenoyl-CoA" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C37H60N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00051r">
+            <rdf:Description rdf:about="#M_MAM00051r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hdd2coa"/>
@@ -94365,10 +94417,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03390c" sboTerm="SBO:0000247" id="MAM03390c" name="3-Oxostearoyl-ACP" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C29H53N2O9PRS">
+      <species metaid="M_MAM03390c" sboTerm="SBO:0000247" id="M_MAM03390c" name="3-Oxostearoyl-ACP" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C29H53N2O9PRS">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03390c">
+            <rdf:Description rdf:about="#M_MAM03390c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM10102"/>
@@ -94379,10 +94431,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03391c" sboTerm="SBO:0000247" id="MAM03391c" name="3-Hydroxystearoyl-ACP" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C29H55N2O9PSR">
+      <species metaid="M_MAM03391c" sboTerm="SBO:0000247" id="M_MAM03391c" name="3-Hydroxystearoyl-ACP" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C29H55N2O9PSR">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03391c">
+            <rdf:Description rdf:about="#M_MAM03391c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM3843"/>
@@ -94393,10 +94445,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03392c" sboTerm="SBO:0000247" id="MAM03392c" name="(2E)-Octadecenoyl-ACP" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C29H53N2O8PSR">
+      <species metaid="M_MAM03392c" sboTerm="SBO:0000247" id="M_MAM03392c" name="(2E)-Octadecenoyl-ACP" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C29H53N2O8PSR">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03392c">
+            <rdf:Description rdf:about="#M_MAM03392c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM2573"/>
@@ -94407,10 +94459,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03389c" sboTerm="SBO:0000247" id="MAM03389c" name="Stearoyl-ACP" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C29H55N2O8PRS">
+      <species metaid="M_MAM03389c" sboTerm="SBO:0000247" id="M_MAM03389c" name="Stearoyl-ACP" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C29H55N2O8PRS">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03389c">
+            <rdf:Description rdf:about="#M_MAM03389c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM6439"/>
@@ -94421,10 +94473,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03326m" sboTerm="SBO:0000247" id="MAM03326m" name="3-Oxolaur-Cis-5-Enoyl Coenzyme A" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C33H50N7O18P3S">
+      <species metaid="M_MAM03326m" sboTerm="SBO:0000247" id="M_MAM03326m" name="3-Oxolaur-Cis-5-Enoyl Coenzyme A" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C33H50N7O18P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03326m">
+            <rdf:Description rdf:about="#M_MAM03326m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/CE0692"/>
@@ -94434,10 +94486,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03393e" sboTerm="SBO:0000247" id="MAM03393e" name="Gm4-Pool" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="X">
+      <species metaid="M_MAM03393e" sboTerm="SBO:0000247" id="M_MAM03393e" name="Gm4-Pool" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="X">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03393e">
+            <rdf:Description rdf:about="#M_MAM03393e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/HC02154"/>
@@ -94449,10 +94501,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00270e" sboTerm="SBO:0000247" id="MAM00270e" name="10-HETE" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O3">
+      <species metaid="M_MAM00270e" sboTerm="SBO:0000247" id="M_MAM00270e" name="10-HETE" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00270e">
+            <rdf:Description rdf:about="#M_MAM00270e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/wharachd"/>
@@ -94467,10 +94519,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00083c" sboTerm="SBO:0000247" id="MAM00083c" name="(3S)-3-hydroxylinoleoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C39H62N7O18P3S">
+      <species metaid="M_MAM00083c" sboTerm="SBO:0000247" id="M_MAM00083c" name="(3S)-3-hydroxylinoleoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C39H62N7O18P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00083c">
+            <rdf:Description rdf:about="#M_MAM00083c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM31120"/>
@@ -94482,10 +94534,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00884c" sboTerm="SBO:0000247" id="MAM00884c" name="3-oxolinoleoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C39H60N7O18P3S">
+      <species metaid="M_MAM00884c" sboTerm="SBO:0000247" id="M_MAM00884c" name="3-oxolinoleoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C39H60N7O18P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00884c">
+            <rdf:Description rdf:about="#M_MAM00884c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM166247"/>
@@ -94496,10 +94548,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01597e" sboTerm="SBO:0000247" id="MAM01597e" name="CoA" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C21H32N7O16P3S">
+      <species metaid="M_MAM01597e" sboTerm="SBO:0000247" id="M_MAM01597e" name="CoA" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C21H32N7O16P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01597e">
+            <rdf:Description rdf:about="#M_MAM01597e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/coa"/>
@@ -94515,10 +94567,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02444e" sboTerm="SBO:0000247" id="MAM02444e" name="malonyl-CoA" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C24H33N7O19P3S">
+      <species metaid="M_MAM02444e" sboTerm="SBO:0000247" id="M_MAM02444e" name="malonyl-CoA" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C24H33N7O19P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02444e">
+            <rdf:Description rdf:about="#M_MAM02444e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/malcoa"/>
@@ -94535,10 +94587,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01773e" sboTerm="SBO:0000247" id="MAM01773e" name="eicosanoyl-CoA" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H70N7O17P3S">
+      <species metaid="M_MAM01773e" sboTerm="SBO:0000247" id="M_MAM01773e" name="eicosanoyl-CoA" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H70N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01773e">
+            <rdf:Description rdf:about="#M_MAM01773e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/arachcoa"/>
@@ -94556,10 +94608,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00866e" sboTerm="SBO:0000247" id="MAM00866e" name="3-oxodocosanoyl-CoA" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C43H72N7O18P3S">
+      <species metaid="M_MAM00866e" sboTerm="SBO:0000247" id="M_MAM00866e" name="3-oxodocosanoyl-CoA" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C43H72N7O18P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00866e">
+            <rdf:Description rdf:about="#M_MAM00866e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM36756"/>
@@ -94571,10 +94623,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00040n" sboTerm="SBO:0000247" id="MAM00040n" name="(2E)-docosenoyl-CoA" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C43H72N7O17P3S">
+      <species metaid="M_MAM00040n" sboTerm="SBO:0000247" id="M_MAM00040n" name="(2E)-docosenoyl-CoA" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C43H72N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00040n">
+            <rdf:Description rdf:about="#M_MAM00040n">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM97615"/>
@@ -94585,10 +94637,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01725n" sboTerm="SBO:0000247" id="MAM01725n" name="docosanoyl-CoA" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C43H74N7O17P3S">
+      <species metaid="M_MAM01725n" sboTerm="SBO:0000247" id="M_MAM01725n" name="docosanoyl-CoA" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C43H74N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01725n">
+            <rdf:Description rdf:about="#M_MAM01725n">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:65088"/>
@@ -94603,10 +94655,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00890r" sboTerm="SBO:0000247" id="MAM00890r" name="3-oxooctadecanoyl-CoA" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C39H64N7O18P3S">
+      <species metaid="M_MAM00890r" sboTerm="SBO:0000247" id="M_MAM00890r" name="3-oxooctadecanoyl-CoA" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C39H64N7O18P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00890r">
+            <rdf:Description rdf:about="#M_MAM00890r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/3ohodcoa"/>
@@ -94622,10 +94674,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00793r" sboTerm="SBO:0000247" id="MAM00793r" name="3-hydroxyoctadecanoyl-CoA" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C39H66N7O18P3S">
+      <species metaid="M_MAM00793r" sboTerm="SBO:0000247" id="M_MAM00793r" name="3-hydroxyoctadecanoyl-CoA" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C39H66N7O18P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00793r">
+            <rdf:Description rdf:about="#M_MAM00793r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM1309"/>
@@ -94637,10 +94689,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00057n" sboTerm="SBO:0000247" id="MAM00057n" name="(2E)-octadecenoyl-CoA" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C39H64N7O17P3S">
+      <species metaid="M_MAM00057n" sboTerm="SBO:0000247" id="M_MAM00057n" name="(2E)-octadecenoyl-CoA" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C39H64N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00057n">
+            <rdf:Description rdf:about="#M_MAM00057n">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/od2coa"/>
@@ -94657,10 +94709,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02941n" sboTerm="SBO:0000247" id="MAM02941n" name="stearoyl-CoA" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C39H66N7O17P3S">
+      <species metaid="M_MAM02941n" sboTerm="SBO:0000247" id="M_MAM02941n" name="stearoyl-CoA" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C39H66N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02941n">
+            <rdf:Description rdf:about="#M_MAM02941n">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/stcoa"/>
@@ -94677,10 +94729,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02158e" sboTerm="SBO:0000247" id="MAM02158e" name="hypothiocyanite" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="CHNOS">
+      <species metaid="M_MAM02158e" sboTerm="SBO:0000247" id="M_MAM02158e" name="hypothiocyanite" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="CHNOS">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02158e">
+            <rdf:Description rdf:about="#M_MAM02158e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM57006"/>
@@ -94693,10 +94745,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02986l" sboTerm="SBO:0000247" id="MAM02986l" name="thiocyanate" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="CNS">
+      <species metaid="M_MAM02986l" sboTerm="SBO:0000247" id="M_MAM02986l" name="thiocyanate" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="CNS">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02986l">
+            <rdf:Description rdf:about="#M_MAM02986l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/tcynt"/>
@@ -94712,10 +94764,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02158l" sboTerm="SBO:0000247" id="MAM02158l" name="hypothiocyanite" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="CHNOS">
+      <species metaid="M_MAM02158l" sboTerm="SBO:0000247" id="M_MAM02158l" name="hypothiocyanite" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="CHNOS">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02158l">
+            <rdf:Description rdf:about="#M_MAM02158l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM57006"/>
@@ -94728,10 +94780,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02158m" sboTerm="SBO:0000247" id="MAM02158m" name="hypothiocyanite" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="CHNOS">
+      <species metaid="M_MAM02158m" sboTerm="SBO:0000247" id="M_MAM02158m" name="hypothiocyanite" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="CHNOS">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02158m">
+            <rdf:Description rdf:about="#M_MAM02158m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM57006"/>
@@ -94744,10 +94796,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02986n" sboTerm="SBO:0000247" id="MAM02986n" name="thiocyanate" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="CNS">
+      <species metaid="M_MAM02986n" sboTerm="SBO:0000247" id="M_MAM02986n" name="thiocyanate" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="CNS">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02986n">
+            <rdf:Description rdf:about="#M_MAM02986n">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/tcynt"/>
@@ -94763,10 +94815,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02158n" sboTerm="SBO:0000247" id="MAM02158n" name="hypothiocyanite" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="CHNOS">
+      <species metaid="M_MAM02158n" sboTerm="SBO:0000247" id="M_MAM02158n" name="hypothiocyanite" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="CHNOS">
         <annotation>
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@@ -94779,10 +94831,10 @@
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@@ -94793,10 +94845,10 @@
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+      <species metaid="M_MAM03341c" sboTerm="SBO:0000247" id="M_MAM03341c" name="3,5,3,5-Tetraiodothyroacetate-Beta-D-Glucuronoside" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C20H14I4O10">
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@@ -94806,10 +94858,10 @@
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+      <species metaid="M_MAM03337r" sboTerm="SBO:0000247" id="M_MAM03337r" name="3,5,3,5-Tetraiodothyroacetate" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C14H7I4O4">
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@@ -94822,10 +94874,10 @@
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+      <species metaid="M_MAM03341r" sboTerm="SBO:0000247" id="M_MAM03341r" name="3,5,3,5-Tetraiodothyroacetate-Beta-D-Glucuronoside" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C20H14I4O10">
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@@ -94837,10 +94889,10 @@
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+      <species metaid="M_MAM03338c" sboTerm="SBO:0000247" id="M_MAM03338c" name="3,3,5-Triiodothyroacetate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C14H8I3O4">
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@@ -94851,10 +94903,10 @@
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+      <species metaid="M_MAM03342c" sboTerm="SBO:0000247" id="M_MAM03342c" name="3,3,5-Triiodothyroacetate-Beta-D-Glucuronoside" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C20H15I3O10">
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@@ -94864,10 +94916,10 @@
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+      <species metaid="M_MAM03338r" sboTerm="SBO:0000247" id="M_MAM03338r" name="3,3,5-Triiodothyroacetate" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C14H8I3O4">
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@@ -94880,10 +94932,10 @@
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+      <species metaid="M_MAM03342r" sboTerm="SBO:0000247" id="M_MAM03342r" name="3,3,5-Triiodothyroacetate-Beta-D-Glucuronoside" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C20H15I3O10">
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@@ -94895,10 +94947,10 @@
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+      <species metaid="M_MAM03339c" sboTerm="SBO:0000247" id="M_MAM03339c" name="3,5,3-Triiodothyroacetate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C14H8I3O4">
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@@ -94909,10 +94961,10 @@
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+      <species metaid="M_MAM03343c" sboTerm="SBO:0000247" id="M_MAM03343c" name="3,5,3-Triiodothyroacetate-Beta-D-Glucuronoside" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C20H15I3O10">
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@@ -94922,10 +94974,10 @@
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+      <species metaid="M_MAM03339r" sboTerm="SBO:0000247" id="M_MAM03339r" name="3,5,3-Triiodothyroacetate" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C14H8I3O4">
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@@ -94938,10 +94990,10 @@
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+      <species metaid="M_MAM03343r" sboTerm="SBO:0000247" id="M_MAM03343r" name="3,5,3-Triiodothyroacetate-Beta-D-Glucuronoside" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C20H15I3O10">
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@@ -94953,10 +95005,10 @@
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+      <species metaid="M_MAM03340c" sboTerm="SBO:0000247" id="M_MAM03340c" name="3,5-Diiodothyroacetate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C14H9I2O4">
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@@ -94967,10 +95019,10 @@
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+      <species metaid="M_MAM03344c" sboTerm="SBO:0000247" id="M_MAM03344c" name="3,5-Diiodothyroacetate-Beta-D-Glucuronoside" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C20H16I2O10">
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@@ -94980,10 +95032,10 @@
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+      <species metaid="M_MAM03340r" sboTerm="SBO:0000247" id="M_MAM03340r" name="3,5-Diiodothyroacetate" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C14H9I2O4">
         <annotation>
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@@ -94996,10 +95048,10 @@
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+      <species metaid="M_MAM03344r" sboTerm="SBO:0000247" id="M_MAM03344r" name="3,5-Diiodothyroacetate-Beta-D-Glucuronoside" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C20H16I2O10">
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@@ -95011,10 +95063,10 @@
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-      <species metaid="MAM01387e" sboTerm="SBO:0000247" id="MAM01387e" name="beta-casomorphin" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C44H60N7O11">
+      <species metaid="M_MAM01387e" sboTerm="SBO:0000247" id="M_MAM01387e" name="beta-casomorphin" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C44H60N7O11">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01387e">
+            <rdf:Description rdf:about="#M_MAM01387e">
               <bqbiol:is>
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                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM163311"/>
@@ -95026,10 +95078,10 @@
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-      <species metaid="MAM01386e" sboTerm="SBO:0000247" id="MAM01386e" name="beta-casomorphin (1-6)" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C38H49N6O10">
+      <species metaid="M_MAM01386e" sboTerm="SBO:0000247" id="M_MAM01386e" name="beta-casomorphin (1-6)" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C38H49N6O10">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01386e">
+            <rdf:Description rdf:about="#M_MAM01386e">
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                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM152651"/>
@@ -95040,10 +95092,10 @@
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-      <species metaid="MAM02563e" sboTerm="SBO:0000247" id="MAM02563e" name="neocasomorphin" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C35H51N6O10">
+      <species metaid="M_MAM02563e" sboTerm="SBO:0000247" id="M_MAM02563e" name="neocasomorphin" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C35H51N6O10">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02563e">
+            <rdf:Description rdf:about="#M_MAM02563e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM158695"/>
@@ -95054,10 +95106,10 @@
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-      <species metaid="MAM02562e" sboTerm="SBO:0000247" id="MAM02562e" name="neocasomorphin (1-5)" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C29H40N5O9">
+      <species metaid="M_MAM02562e" sboTerm="SBO:0000247" id="M_MAM02562e" name="neocasomorphin (1-5)" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C29H40N5O9">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02562e">
+            <rdf:Description rdf:about="#M_MAM02562e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM158696"/>
@@ -95068,10 +95120,10 @@
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-      <species metaid="MAM01348e" sboTerm="SBO:0000247" id="MAM01348e" name="apelin-13" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="3" fbc:chemicalFormula="C69H114N23O16S">
+      <species metaid="M_MAM01348e" sboTerm="SBO:0000247" id="M_MAM01348e" name="apelin-13" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="3" fbc:chemicalFormula="C69H114N23O16S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01348e">
+            <rdf:Description rdf:about="#M_MAM01348e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM42305"/>
@@ -95083,10 +95135,10 @@
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-      <species metaid="MAM01347e" sboTerm="SBO:0000247" id="MAM01347e" name="apelin-(1-12)" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="3" fbc:chemicalFormula="C60H105N22O15S">
+      <species metaid="M_MAM01347e" sboTerm="SBO:0000247" id="M_MAM01347e" name="apelin-(1-12)" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="3" fbc:chemicalFormula="C60H105N22O15S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01347e">
+            <rdf:Description rdf:about="#M_MAM01347e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM152293"/>
@@ -95097,10 +95149,10 @@
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         </annotation>
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-      <species metaid="MAM03330c" sboTerm="SBO:0000247" id="MAM03330c" name="Cyanosulfurous Acid Anion" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="CH2NO2S">
+      <species metaid="M_MAM03330c" sboTerm="SBO:0000247" id="M_MAM03330c" name="Cyanosulfurous Acid Anion" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="CH2NO2S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03330c">
+            <rdf:Description rdf:about="#M_MAM03330c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/CE1950"/>
@@ -95111,10 +95163,10 @@
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         </annotation>
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-      <species metaid="MAM03525c" sboTerm="SBO:0000247" id="MAM03525c" name="Cyanate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="CNO">
+      <species metaid="M_MAM03525c" sboTerm="SBO:0000247" id="M_MAM03525c" name="Cyanate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="CNO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03525c">
+            <rdf:Description rdf:about="#M_MAM03525c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/cynt"/>
@@ -95127,10 +95179,10 @@
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         </annotation>
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-      <species metaid="MAM03330e" sboTerm="SBO:0000247" id="MAM03330e" name="Cyanosulfurous Acid Anion" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="CH2NO2S">
+      <species metaid="M_MAM03330e" sboTerm="SBO:0000247" id="M_MAM03330e" name="Cyanosulfurous Acid Anion" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="CH2NO2S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03330e">
+            <rdf:Description rdf:about="#M_MAM03330e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/CE1950"/>
@@ -95142,10 +95194,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM03525e" sboTerm="SBO:0000247" id="MAM03525e" name="Cyanate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="CNO">
+      <species metaid="M_MAM03525e" sboTerm="SBO:0000247" id="M_MAM03525e" name="Cyanate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="CNO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03525e">
+            <rdf:Description rdf:about="#M_MAM03525e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/cynt"/>
@@ -95158,10 +95210,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM02949l" sboTerm="SBO:0000247" id="MAM02949l" name="sulfite" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="O3S">
+      <species metaid="M_MAM02949l" sboTerm="SBO:0000247" id="M_MAM02949l" name="sulfite" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="O3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02949l">
+            <rdf:Description rdf:about="#M_MAM02949l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/so3"/>
@@ -95176,10 +95228,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03330l" sboTerm="SBO:0000247" id="MAM03330l" name="Cyanosulfurous Acid Anion" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="CH2NO2S">
+      <species metaid="M_MAM03330l" sboTerm="SBO:0000247" id="M_MAM03330l" name="Cyanosulfurous Acid Anion" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="CH2NO2S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03330l">
+            <rdf:Description rdf:about="#M_MAM03330l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/CE1950"/>
@@ -95190,10 +95242,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03525l" sboTerm="SBO:0000247" id="MAM03525l" name="Cyanate" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="CNO">
+      <species metaid="M_MAM03525l" sboTerm="SBO:0000247" id="M_MAM03525l" name="Cyanate" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="CNO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03525l">
+            <rdf:Description rdf:about="#M_MAM03525l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/pubchem.compound/540"/>
@@ -95204,10 +95256,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02949n" sboTerm="SBO:0000247" id="MAM02949n" name="sulfite" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="O3S">
+      <species metaid="M_MAM02949n" sboTerm="SBO:0000247" id="M_MAM02949n" name="sulfite" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="O3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02949n">
+            <rdf:Description rdf:about="#M_MAM02949n">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/so3"/>
@@ -95222,10 +95274,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03330n" sboTerm="SBO:0000247" id="MAM03330n" name="Cyanosulfurous Acid Anion" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="CH2NO2S">
+      <species metaid="M_MAM03330n" sboTerm="SBO:0000247" id="M_MAM03330n" name="Cyanosulfurous Acid Anion" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="CH2NO2S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03330n">
+            <rdf:Description rdf:about="#M_MAM03330n">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/CE1950"/>
@@ -95236,10 +95288,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03525n" sboTerm="SBO:0000247" id="MAM03525n" name="Cyanate" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="CNO">
+      <species metaid="M_MAM03525n" sboTerm="SBO:0000247" id="M_MAM03525n" name="Cyanate" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="CNO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03525n">
+            <rdf:Description rdf:about="#M_MAM03525n">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/pubchem.compound/540"/>
@@ -95250,10 +95302,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03345c" sboTerm="SBO:0000247" id="MAM03345c" name="Dynorphin B" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="3" fbc:chemicalFormula="C74H118N21O17">
+      <species metaid="M_MAM03345c" sboTerm="SBO:0000247" id="M_MAM03345c" name="Dynorphin B" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="3" fbc:chemicalFormula="C74H118N21O17">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03345c">
+            <rdf:Description rdf:about="#M_MAM03345c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/CE2891"/>
@@ -95266,10 +95318,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03348c" sboTerm="SBO:0000247" id="MAM03348c" name="Dynorphin B (10-13)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C20H40N5O6">
+      <species metaid="M_MAM03348c" sboTerm="SBO:0000247" id="M_MAM03348c" name="Dynorphin B (10-13)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C20H40N5O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03348c">
+            <rdf:Description rdf:about="#M_MAM03348c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/CE4753"/>
@@ -95282,10 +95334,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM03349c" sboTerm="SBO:0000247" id="MAM03349c" name="Dynorphin B (6-9)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="C26H45N11O6">
+      <species metaid="M_MAM03349c" sboTerm="SBO:0000247" id="M_MAM03349c" name="Dynorphin B (6-9)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="C26H45N11O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03349c">
+            <rdf:Description rdf:about="#M_MAM03349c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/CE4754"/>
@@ -95298,10 +95350,10 @@
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       </species>
-      <species metaid="MAM02319m" sboTerm="SBO:0000247" id="MAM02319m" name="kynurenine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H12N2O3">
+      <species metaid="M_MAM02319m" sboTerm="SBO:0000247" id="M_MAM02319m" name="kynurenine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H12N2O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02319m">
+            <rdf:Description rdf:about="#M_MAM02319m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/Lkynr"/>
@@ -95318,10 +95370,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM00990m" sboTerm="SBO:0000247" id="MAM00990m" name="4-hydroxy-2-quinolinecarboxylic acid" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H6NO3">
+      <species metaid="M_MAM00990m" sboTerm="SBO:0000247" id="M_MAM00990m" name="4-hydroxy-2-quinolinecarboxylic acid" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H6NO3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00990m">
+            <rdf:Description rdf:about="#M_MAM00990m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/kynate"/>
@@ -95337,10 +95389,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02736m" sboTerm="SBO:0000247" id="MAM02736m" name="phosphatidylinositol-4,5-bisphosphate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C11H14O19P3R2">
+      <species metaid="M_MAM02736m" sboTerm="SBO:0000247" id="M_MAM02736m" name="phosphatidylinositol-4,5-bisphosphate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C11H14O19P3R2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02736m">
+            <rdf:Description rdf:about="#M_MAM02736m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pail45p_hs"/>
@@ -95354,10 +95406,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00554m" sboTerm="SBO:0000247" id="MAM00554m" name="1-phosphatidyl-1D-myo-inositol-5-phosphate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C11H15O16P2R2">
+      <species metaid="M_MAM00554m" sboTerm="SBO:0000247" id="M_MAM00554m" name="1-phosphatidyl-1D-myo-inositol-5-phosphate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C11H15O16P2R2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00554m">
+            <rdf:Description rdf:about="#M_MAM00554m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pail5p_hs"/>
@@ -95372,10 +95424,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02387m" sboTerm="SBO:0000247" id="MAM02387m" name="linoleate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H31O2">
+      <species metaid="M_MAM02387m" sboTerm="SBO:0000247" id="M_MAM02387m" name="linoleate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H31O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02387m">
+            <rdf:Description rdf:about="#M_MAM02387m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/lnlc"/>
@@ -95392,10 +95444,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02387x" sboTerm="SBO:0000247" id="MAM02387x" name="linoleate" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H31O2">
+      <species metaid="M_MAM02387x" sboTerm="SBO:0000247" id="M_MAM02387x" name="linoleate" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H31O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02387x">
+            <rdf:Description rdf:about="#M_MAM02387x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/lnlc"/>
@@ -95412,10 +95464,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00081c" sboTerm="SBO:0000247" id="MAM00081c" name="(3S)-3-hydroxy-cis,cis-palmito-7,10-dienoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C37H58N7O18P3S">
+      <species metaid="M_MAM00081c" sboTerm="SBO:0000247" id="M_MAM00081c" name="(3S)-3-hydroxy-cis,cis-palmito-7,10-dienoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C37H58N7O18P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00081c">
+            <rdf:Description rdf:about="#M_MAM00081c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM31113"/>
@@ -95427,10 +95479,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00855c" sboTerm="SBO:0000247" id="MAM00855c" name="3-oxo-cis,cis-7,10-hexadecadienoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C37H56N7O18P3S">
+      <species metaid="M_MAM00855c" sboTerm="SBO:0000247" id="M_MAM00855c" name="3-oxo-cis,cis-7,10-hexadecadienoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C37H56N7O18P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00855c">
+            <rdf:Description rdf:about="#M_MAM00855c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM166235"/>
@@ -95441,10 +95493,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00696c" sboTerm="SBO:0000247" id="MAM00696c" name="3(S)-hydroxy-(5Z,8Z)-tetradecadienoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C35H54N7O18P3S">
+      <species metaid="M_MAM00696c" sboTerm="SBO:0000247" id="M_MAM00696c" name="3(S)-hydroxy-(5Z,8Z)-tetradecadienoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C35H54N7O18P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00696c">
+            <rdf:Description rdf:about="#M_MAM00696c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM166068"/>
@@ -95455,10 +95507,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00854c" sboTerm="SBO:0000247" id="MAM00854c" name="3-oxo-cis,cis-5,8-tetradecadienoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C35H52N7O18P3S">
+      <species metaid="M_MAM00854c" sboTerm="SBO:0000247" id="M_MAM00854c" name="3-oxo-cis,cis-5,8-tetradecadienoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C35H52N7O18P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00854c">
+            <rdf:Description rdf:about="#M_MAM00854c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM166234"/>
@@ -95469,10 +95521,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00082c" sboTerm="SBO:0000247" id="MAM00082c" name="(3S)-3-hydroxydodec-cis-6-enoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C33H52N7O18P3S">
+      <species metaid="M_MAM00082c" sboTerm="SBO:0000247" id="M_MAM00082c" name="(3S)-3-hydroxydodec-cis-6-enoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C33H52N7O18P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00082c">
+            <rdf:Description rdf:about="#M_MAM00082c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM31119"/>
@@ -95484,10 +95536,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00883c" sboTerm="SBO:0000247" id="MAM00883c" name="3-oxolaur-6-cis-enoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C33H50N7O18P3S">
+      <species metaid="M_MAM00883c" sboTerm="SBO:0000247" id="M_MAM00883c" name="3-oxolaur-6-cis-enoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C33H50N7O18P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00883c">
+            <rdf:Description rdf:about="#M_MAM00883c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM166245"/>
@@ -95498,10 +95550,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01110m" sboTerm="SBO:0000247" id="MAM01110m" name="5-hydroxytryptophol" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H11NO2">
+      <species metaid="M_MAM01110m" sboTerm="SBO:0000247" id="M_MAM01110m" name="5-hydroxytryptophol" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H11NO2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01110m">
+            <rdf:Description rdf:about="#M_MAM01110m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/hmdb/HMDB01855"/>
@@ -95515,10 +95567,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01183c" sboTerm="SBO:0000247" id="MAM01183c" name="7alpha-hydroxycholesterol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H46O2">
+      <species metaid="M_MAM01183c" sboTerm="SBO:0000247" id="M_MAM01183c" name="7alpha-hydroxycholesterol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H46O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01183c">
+            <rdf:Description rdf:about="#M_MAM01183c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/xol7a"/>
@@ -95536,10 +95588,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01182m" sboTerm="SBO:0000247" id="MAM01182m" name="7alpha-hydroxycholest-4-en-3-one" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H44O2">
+      <species metaid="M_MAM01182m" sboTerm="SBO:0000247" id="M_MAM01182m" name="7alpha-hydroxycholest-4-en-3-one" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H44O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01182m">
+            <rdf:Description rdf:about="#M_MAM01182m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/xol7aone"/>
@@ -95558,10 +95610,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01094c" sboTerm="SBO:0000247" id="MAM01094c" name="5beta-cholestane-3alpha,7alpha,27-triol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H48O3">
+      <species metaid="M_MAM01094c" sboTerm="SBO:0000247" id="M_MAM01094c" name="5beta-cholestane-3alpha,7alpha,27-triol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H48O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01094c">
+            <rdf:Description rdf:about="#M_MAM01094c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/CE0233"/>
@@ -95574,10 +95626,10 @@
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         </annotation>
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-      <species metaid="MAM01089c" sboTerm="SBO:0000247" id="MAM01089c" name="5beta-cholestane-3alpha,7alpha,12alpha,25-tetrol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H48O4">
+      <species metaid="M_MAM01089c" sboTerm="SBO:0000247" id="M_MAM01089c" name="5beta-cholestane-3alpha,7alpha,12alpha,25-tetrol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H48O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01089c">
+            <rdf:Description rdf:about="#M_MAM01089c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/hmdb/HMDB00655"/>
@@ -95592,10 +95644,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM01085c" sboTerm="SBO:0000247" id="MAM01085c" name="5beta-cholestane-3alpha,7alpha,12alpha,23,25-pentol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H48O5">
+      <species metaid="M_MAM01085c" sboTerm="SBO:0000247" id="M_MAM01085c" name="5beta-cholestane-3alpha,7alpha,12alpha,23,25-pentol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H48O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01085c">
+            <rdf:Description rdf:about="#M_MAM01085c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM28106"/>
@@ -95608,10 +95660,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM01086c" sboTerm="SBO:0000247" id="MAM01086c" name="5beta-cholestane-3alpha,7alpha,12alpha,24r,25-pentol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H48O5">
+      <species metaid="M_MAM01086c" sboTerm="SBO:0000247" id="M_MAM01086c" name="5beta-cholestane-3alpha,7alpha,12alpha,24r,25-pentol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H48O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01086c">
+            <rdf:Description rdf:about="#M_MAM01086c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/hmdb/HMDB00556"/>
@@ -95626,10 +95678,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM01088c" sboTerm="SBO:0000247" id="MAM01088c" name="5beta-cholestane-3alpha,7alpha,12alpha,25,27-pentol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H48O5">
+      <species metaid="M_MAM01088c" sboTerm="SBO:0000247" id="M_MAM01088c" name="5beta-cholestane-3alpha,7alpha,12alpha,25,27-pentol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H48O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01088c">
+            <rdf:Description rdf:about="#M_MAM01088c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/hmdb/HMDB02180"/>
@@ -95644,10 +95696,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00763c" sboTerm="SBO:0000247" id="MAM00763c" name="3beta-hydroxy-5-cholestenal" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H44O2">
+      <species metaid="M_MAM00763c" sboTerm="SBO:0000247" id="M_MAM00763c" name="3beta-hydroxy-5-cholestenal" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H44O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00763c">
+            <rdf:Description rdf:about="#M_MAM00763c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM163194"/>
@@ -95659,10 +95711,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00764c" sboTerm="SBO:0000247" id="MAM00764c" name="3beta-hydroxy-5-cholestene-27-oate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C27H43O3">
+      <species metaid="M_MAM00764c" sboTerm="SBO:0000247" id="M_MAM00764c" name="3beta-hydroxy-5-cholestene-27-oate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C27H43O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00764c">
+            <rdf:Description rdf:about="#M_MAM00764c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM163195"/>
@@ -95673,10 +95725,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00761c" sboTerm="SBO:0000247" id="MAM00761c" name="3beta,7alpha-dihydroxy-5-cholestenoate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C27H43O4">
+      <species metaid="M_MAM00761c" sboTerm="SBO:0000247" id="M_MAM00761c" name="3beta,7alpha-dihydroxy-5-cholestenoate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C27H43O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00761c">
+            <rdf:Description rdf:about="#M_MAM00761c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM6853"/>
@@ -95688,10 +95740,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01180c" sboTerm="SBO:0000247" id="MAM01180c" name="7alpha-hydroxy-3-oxo-4-cholestenoic acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C27H41O4">
+      <species metaid="M_MAM01180c" sboTerm="SBO:0000247" id="M_MAM01180c" name="7alpha-hydroxy-3-oxo-4-cholestenoic acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C27H41O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01180c">
+            <rdf:Description rdf:about="#M_MAM01180c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM164390"/>
@@ -95702,10 +95754,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01434m" sboTerm="SBO:0000247" id="MAM01434m" name="chenodeoxycholoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C45H70N7O19P3S">
+      <species metaid="M_MAM01434m" sboTerm="SBO:0000247" id="M_MAM01434m" name="chenodeoxycholoyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C45H70N7O19P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01434m">
+            <rdf:Description rdf:about="#M_MAM01434m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dcholcoa"/>
@@ -95721,10 +95773,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00614m" sboTerm="SBO:0000247" id="MAM00614m" name="25(R)DHCA-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C48H76N7O19P3S">
+      <species metaid="M_MAM00614m" sboTerm="SBO:0000247" id="M_MAM00614m" name="25(R)DHCA-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C48H76N7O19P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00614m">
+            <rdf:Description rdf:about="#M_MAM00614m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dhcholestancoa"/>
@@ -95742,10 +95794,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00570e" sboTerm="SBO:0000247" id="MAM00570e" name="2,3-cyclic-UMP" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C9H10N2O8P">
+      <species metaid="M_MAM00570e" sboTerm="SBO:0000247" id="M_MAM00570e" name="2,3-cyclic-UMP" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C9H10N2O8P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00570e">
+            <rdf:Description rdf:about="#M_MAM00570e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C02355"/>
@@ -95758,10 +95810,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00921e" sboTerm="SBO:0000247" id="MAM00921e" name="3-UMP" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C9H11N2O9P">
+      <species metaid="M_MAM00921e" sboTerm="SBO:0000247" id="M_MAM00921e" name="3-UMP" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C9H11N2O9P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00921e">
+            <rdf:Description rdf:about="#M_MAM00921e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:28895"/>
@@ -95775,10 +95827,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02734g" sboTerm="SBO:0000247" id="MAM02734g" name="phosphatidylinositol-3,4,5-trisphosphate" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-7" fbc:chemicalFormula="C11H13O22P4R2">
+      <species metaid="M_MAM02734g" sboTerm="SBO:0000247" id="M_MAM02734g" name="phosphatidylinositol-3,4,5-trisphosphate" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-7" fbc:chemicalFormula="C11H13O22P4R2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02734g">
+            <rdf:Description rdf:about="#M_MAM02734g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pail345p_hs"/>
@@ -95792,10 +95844,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02735g" sboTerm="SBO:0000247" id="MAM02735g" name="phosphatidylinositol-3,5-bisphosphate" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C11H14O19P3R2">
+      <species metaid="M_MAM02735g" sboTerm="SBO:0000247" id="M_MAM02735g" name="phosphatidylinositol-3,5-bisphosphate" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C11H14O19P3R2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02735g">
+            <rdf:Description rdf:about="#M_MAM02735g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pail35p_hs"/>
@@ -95809,10 +95861,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02734r" sboTerm="SBO:0000247" id="MAM02734r" name="phosphatidylinositol-3,4,5-trisphosphate" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-7" fbc:chemicalFormula="C11H13O22P4R2">
+      <species metaid="M_MAM02734r" sboTerm="SBO:0000247" id="M_MAM02734r" name="phosphatidylinositol-3,4,5-trisphosphate" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-7" fbc:chemicalFormula="C11H13O22P4R2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02734r">
+            <rdf:Description rdf:about="#M_MAM02734r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pail345p_hs"/>
@@ -95826,10 +95878,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00635r" sboTerm="SBO:0000247" id="MAM00635r" name="2-arachidonoylglycerol" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H38O4">
+      <species metaid="M_MAM00635r" sboTerm="SBO:0000247" id="M_MAM00635r" name="2-arachidonoylglycerol" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H38O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00635r">
+            <rdf:Description rdf:about="#M_MAM00635r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:52392"/>
@@ -95846,10 +95898,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM00635g" sboTerm="SBO:0000247" id="MAM00635g" name="2-arachidonoylglycerol" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H38O4">
+      <species metaid="M_MAM00635g" sboTerm="SBO:0000247" id="M_MAM00635g" name="2-arachidonoylglycerol" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H38O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00635g">
+            <rdf:Description rdf:about="#M_MAM00635g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:52392"/>
@@ -95866,10 +95918,10 @@
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-      <species metaid="MAM00534g" sboTerm="SBO:0000247" id="MAM00534g" name="1-lyso-2-arachidonoyl-phosphatidate" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C23H37O7P">
+      <species metaid="M_MAM00534g" sboTerm="SBO:0000247" id="M_MAM00534g" name="1-lyso-2-arachidonoyl-phosphatidate" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C23H37O7P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00534g">
+            <rdf:Description rdf:about="#M_MAM00534g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM32836"/>
@@ -95881,10 +95933,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM00534r" sboTerm="SBO:0000247" id="MAM00534r" name="1-lyso-2-arachidonoyl-phosphatidate" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C23H37O7P">
+      <species metaid="M_MAM00534r" sboTerm="SBO:0000247" id="M_MAM00534r" name="1-lyso-2-arachidonoyl-phosphatidate" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C23H37O7P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00534r">
+            <rdf:Description rdf:about="#M_MAM00534r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM32836"/>
@@ -95896,10 +95948,10 @@
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         </annotation>
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-      <species metaid="MAM02786m" sboTerm="SBO:0000247" id="MAM02786m" name="prostaglandin E2" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O5">
+      <species metaid="M_MAM02786m" sboTerm="SBO:0000247" id="M_MAM02786m" name="prostaglandin E2" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02786m">
+            <rdf:Description rdf:about="#M_MAM02786m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/prostge2"/>
@@ -95917,10 +95969,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM02777m" sboTerm="SBO:0000247" id="MAM02777m" name="prostaglandin A2" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H29O4">
+      <species metaid="M_MAM02777m" sboTerm="SBO:0000247" id="M_MAM02777m" name="prostaglandin A2" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H29O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02777m">
+            <rdf:Description rdf:about="#M_MAM02777m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:27820"/>
@@ -95936,10 +95988,10 @@
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         </annotation>
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-      <species metaid="MAM03346c" sboTerm="SBO:0000247" id="MAM03346c" name="Rac-5,6-Epoxy-Retinoate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H27O3">
+      <species metaid="M_MAM03346c" sboTerm="SBO:0000247" id="M_MAM03346c" name="Rac-5,6-Epoxy-Retinoate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H27O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03346c">
+            <rdf:Description rdf:about="#M_MAM03346c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/pubchem.compound/536537"/>
@@ -95950,10 +96002,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03327c" sboTerm="SBO:0000247" id="MAM03327c" name="Vitamin A2" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H28O">
+      <species metaid="M_MAM03327c" sboTerm="SBO:0000247" id="M_MAM03327c" name="Vitamin A2" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H28O">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03327c">
+            <rdf:Description rdf:about="#M_MAM03327c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/CE1162"/>
@@ -95967,10 +96019,10 @@
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         </annotation>
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-      <species metaid="MAM03347c" sboTerm="SBO:0000247" id="MAM03347c" name="All-Trans-3,4-Didehydroretinoate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H25O2">
+      <species metaid="M_MAM03347c" sboTerm="SBO:0000247" id="M_MAM03347c" name="All-Trans-3,4-Didehydroretinoate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H25O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03347c">
+            <rdf:Description rdf:about="#M_MAM03347c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/CE2955"/>
@@ -95982,10 +96034,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03329c" sboTerm="SBO:0000247" id="MAM03329c" name="8-Dehydrocholesterol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H44O">
+      <species metaid="M_MAM03329c" sboTerm="SBO:0000247" id="M_MAM03329c" name="8-Dehydrocholesterol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H44O">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03329c">
+            <rdf:Description rdf:about="#M_MAM03329c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/CE1297"/>
@@ -95999,10 +96051,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03328c" sboTerm="SBO:0000247" id="MAM03328c" name="27Alpha-Hydroxy-8-Dehydrocholesterol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H44O2">
+      <species metaid="M_MAM03328c" sboTerm="SBO:0000247" id="M_MAM03328c" name="27Alpha-Hydroxy-8-Dehydrocholesterol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H44O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03328c">
+            <rdf:Description rdf:about="#M_MAM03328c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/CE1294"/>
@@ -96015,10 +96067,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03329m" sboTerm="SBO:0000247" id="MAM03329m" name="8-Dehydrocholesterol" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H44O">
+      <species metaid="M_MAM03329m" sboTerm="SBO:0000247" id="M_MAM03329m" name="8-Dehydrocholesterol" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H44O">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03329m">
+            <rdf:Description rdf:about="#M_MAM03329m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/CE1297"/>
@@ -96032,10 +96084,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03328m" sboTerm="SBO:0000247" id="MAM03328m" name="27Alpha-Hydroxy-8-Dehydrocholesterol" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H44O2">
+      <species metaid="M_MAM03328m" sboTerm="SBO:0000247" id="M_MAM03328m" name="27Alpha-Hydroxy-8-Dehydrocholesterol" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H44O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03328m">
+            <rdf:Description rdf:about="#M_MAM03328m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/CE1294"/>
@@ -96048,10 +96100,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03376c" sboTerm="SBO:0000247" id="MAM03376c" name="13,14-Epoxy-Retinol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H30O2">
+      <species metaid="M_MAM03376c" sboTerm="SBO:0000247" id="M_MAM03376c" name="13,14-Epoxy-Retinol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H30O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03376c">
+            <rdf:Description rdf:about="#M_MAM03376c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/CE5932"/>
@@ -96064,10 +96116,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03355c" sboTerm="SBO:0000247" id="MAM03355c" name="14-Hydroxy-4,14-Retro-Retinol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H30O2">
+      <species metaid="M_MAM03355c" sboTerm="SBO:0000247" id="M_MAM03355c" name="14-Hydroxy-4,14-Retro-Retinol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H30O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03355c">
+            <rdf:Description rdf:about="#M_MAM03355c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/CE5013"/>
@@ -96081,10 +96133,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02315e" sboTerm="SBO:0000247" id="MAM02315e" name="kinetensin 1-7" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="C41H67N15O9">
+      <species metaid="M_MAM02315e" sboTerm="SBO:0000247" id="M_MAM02315e" name="kinetensin 1-7" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="C41H67N15O9">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02315e">
+            <rdf:Description rdf:about="#M_MAM02315e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM59130"/>
@@ -96096,10 +96148,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02316e" sboTerm="SBO:0000247" id="MAM02316e" name="kinetensin 1-8" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="C50H76N16O10">
+      <species metaid="M_MAM02316e" sboTerm="SBO:0000247" id="M_MAM02316e" name="kinetensin 1-8" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="C50H76N16O10">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02316e">
+            <rdf:Description rdf:about="#M_MAM02316e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM59131"/>
@@ -96111,10 +96163,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02570e" sboTerm="SBO:0000247" id="MAM02570e" name="neuromedin N" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C32H51N5O7">
+      <species metaid="M_MAM02570e" sboTerm="SBO:0000247" id="M_MAM02570e" name="neuromedin N" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C32H51N5O7">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02570e">
+            <rdf:Description rdf:about="#M_MAM02570e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM64499"/>
@@ -96127,10 +96179,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02569e" sboTerm="SBO:0000247" id="MAM02569e" name="neuromedin N(1-4)" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C26H40N4O6">
+      <species metaid="M_MAM02569e" sboTerm="SBO:0000247" id="M_MAM02569e" name="neuromedin N(1-4)" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C26H40N4O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02569e">
+            <rdf:Description rdf:about="#M_MAM02569e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM64500"/>
@@ -96143,10 +96195,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01738x" sboTerm="SBO:0000247" id="MAM01738x" name="dopamine-O-quinone" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C8H10NO2">
+      <species metaid="M_MAM01738x" sboTerm="SBO:0000247" id="M_MAM01738x" name="dopamine-O-quinone" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C8H10NO2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01738x">
+            <rdf:Description rdf:about="#M_MAM01738x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM5727"/>
@@ -96158,10 +96210,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00788m" sboTerm="SBO:0000247" id="MAM00788m" name="3-hydroxy-L-kynurenine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H12N2O4">
+      <species metaid="M_MAM00788m" sboTerm="SBO:0000247" id="M_MAM00788m" name="3-hydroxy-L-kynurenine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H12N2O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00788m">
+            <rdf:Description rdf:about="#M_MAM00788m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hLkynr"/>
@@ -96178,10 +96230,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03151m" sboTerm="SBO:0000247" id="MAM03151m" name="xanthurenate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H6NO4">
+      <species metaid="M_MAM03151m" sboTerm="SBO:0000247" id="M_MAM03151m" name="xanthurenate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H6NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03151m">
+            <rdf:Description rdf:about="#M_MAM03151m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:217069"/>
@@ -96196,10 +96248,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03370c" sboTerm="SBO:0000247" id="MAM03370c" name="7,8-Epoxy-8Alpha-Hydroperoxytocopherone" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C29H50O5">
+      <species metaid="M_MAM03370c" sboTerm="SBO:0000247" id="M_MAM03370c" name="7,8-Epoxy-8Alpha-Hydroperoxytocopherone" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C29H50O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03370c">
+            <rdf:Description rdf:about="#M_MAM03370c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/CE5837"/>
@@ -96212,10 +96264,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03371c" sboTerm="SBO:0000247" id="MAM03371c" name="5,6-Epoxy-Alpha-Tocopheryl Quinone" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C29H50O4">
+      <species metaid="M_MAM03371c" sboTerm="SBO:0000247" id="M_MAM03371c" name="5,6-Epoxy-Alpha-Tocopheryl Quinone" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C29H50O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03371c">
+            <rdf:Description rdf:about="#M_MAM03371c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/CE5838"/>
@@ -96228,10 +96280,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03372c" sboTerm="SBO:0000247" id="MAM03372c" name="4Alpha,5-Epoxy-8Alpha-Hydroperoxytocopherone" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C29H50O5">
+      <species metaid="M_MAM03372c" sboTerm="SBO:0000247" id="M_MAM03372c" name="4Alpha,5-Epoxy-8Alpha-Hydroperoxytocopherone" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C29H50O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03372c">
+            <rdf:Description rdf:about="#M_MAM03372c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/CE5839"/>
@@ -96244,10 +96296,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03373c" sboTerm="SBO:0000247" id="MAM03373c" name="2,3-Epoxy-Alpha-Tocopheryl Quinone" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C29H50O4">
+      <species metaid="M_MAM03373c" sboTerm="SBO:0000247" id="M_MAM03373c" name="2,3-Epoxy-Alpha-Tocopheryl Quinone" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C29H50O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03373c">
+            <rdf:Description rdf:about="#M_MAM03373c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/CE5840"/>
@@ -96260,10 +96312,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00766r" sboTerm="SBO:0000247" id="MAM00766r" name="3-carboxy-alpha-chromanol" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C16H21O4">
+      <species metaid="M_MAM00766r" sboTerm="SBO:0000247" id="M_MAM00766r" name="3-carboxy-alpha-chromanol" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C16H21O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00766r">
+            <rdf:Description rdf:about="#M_MAM00766r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM163170"/>
@@ -96275,10 +96327,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01321r" sboTerm="SBO:0000247" id="MAM01321r" name="alpha-CEHC-glucuronide" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C22H29O10">
+      <species metaid="M_MAM01321r" sboTerm="SBO:0000247" id="M_MAM01321r" name="alpha-CEHC-glucuronide" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C22H29O10">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01321r">
+            <rdf:Description rdf:about="#M_MAM01321r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM15963"/>
@@ -96289,10 +96341,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01923r" sboTerm="SBO:0000247" id="MAM01923r" name="gamma-carboxyethyl-hydroxychroman" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C15H19O4">
+      <species metaid="M_MAM01923r" sboTerm="SBO:0000247" id="M_MAM01923r" name="gamma-carboxyethyl-hydroxychroman" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C15H19O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01923r">
+            <rdf:Description rdf:about="#M_MAM01923r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM163392"/>
@@ -96304,10 +96356,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01924r" sboTerm="SBO:0000247" id="MAM01924r" name="gamma-CEHC-glucuronide" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C21H27O10">
+      <species metaid="M_MAM01924r" sboTerm="SBO:0000247" id="M_MAM01924r" name="gamma-CEHC-glucuronide" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C21H27O10">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01924r">
+            <rdf:Description rdf:about="#M_MAM01924r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM163393"/>
@@ -96318,10 +96370,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01675n" sboTerm="SBO:0000247" id="MAM01675n" name="desmosterol" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H44O">
+      <species metaid="M_MAM01675n" sboTerm="SBO:0000247" id="M_MAM01675n" name="desmosterol" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H44O">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01675n">
+            <rdf:Description rdf:about="#M_MAM01675n">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dsmsterol"/>
@@ -96340,10 +96392,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00787m" sboTerm="SBO:0000247" id="MAM00787m" name="3-hydroxykynurenine-O-beta-D-glucoside" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C16H22N2O9">
+      <species metaid="M_MAM00787m" sboTerm="SBO:0000247" id="M_MAM00787m" name="3-hydroxykynurenine-O-beta-D-glucoside" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C16H22N2O9">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00787m">
+            <rdf:Description rdf:about="#M_MAM00787m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM163184"/>
@@ -96355,10 +96407,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01979m" sboTerm="SBO:0000247" id="MAM01979m" name="glutathionyl-3-hydroxykynurenine glucoside" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C26H36N5O14S">
+      <species metaid="M_MAM01979m" sboTerm="SBO:0000247" id="M_MAM01979m" name="glutathionyl-3-hydroxykynurenine glucoside" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C26H36N5O14S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01979m">
+            <rdf:Description rdf:about="#M_MAM01979m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM165154"/>
@@ -96369,10 +96421,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03369c" sboTerm="SBO:0000247" id="MAM03369c" name="5-Ht-Moduline" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H34N4O6">
+      <species metaid="M_MAM03369c" sboTerm="SBO:0000247" id="M_MAM03369c" name="5-Ht-Moduline" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H34N4O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03369c">
+            <rdf:Description rdf:about="#M_MAM03369c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/CE5829"/>
@@ -96385,10 +96437,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03374c" sboTerm="SBO:0000247" id="MAM03374c" name="L-Leucyl-L-Serine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H18N2O4">
+      <species metaid="M_MAM03374c" sboTerm="SBO:0000247" id="M_MAM03374c" name="L-Leucyl-L-Serine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H18N2O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03374c">
+            <rdf:Description rdf:about="#M_MAM03374c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/CE5865"/>
@@ -96402,10 +96454,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03375c" sboTerm="SBO:0000247" id="MAM03375c" name="L-Alanyl-L-Leucine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H18N2O3">
+      <species metaid="M_MAM03375c" sboTerm="SBO:0000247" id="M_MAM03375c" name="L-Alanyl-L-Leucine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H18N2O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03375c">
+            <rdf:Description rdf:about="#M_MAM03375c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/CE5866"/>
@@ -96419,10 +96471,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02551e" sboTerm="SBO:0000247" id="MAM02551e" name="N-acetyl-seryl-aspartyl-lysyl-proline" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H32N5O9">
+      <species metaid="M_MAM02551e" sboTerm="SBO:0000247" id="M_MAM02551e" name="N-acetyl-seryl-aspartyl-lysyl-proline" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H32N5O9">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02551e">
+            <rdf:Description rdf:about="#M_MAM02551e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM163855"/>
@@ -96434,10 +96486,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02550e" sboTerm="SBO:0000247" id="MAM02550e" name="N-acetyl-seryl-aspartate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C9H12N2O7">
+      <species metaid="M_MAM02550e" sboTerm="SBO:0000247" id="M_MAM02550e" name="N-acetyl-seryl-aspartate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C9H12N2O7">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02550e">
+            <rdf:Description rdf:about="#M_MAM02550e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM42"/>
@@ -96448,10 +96500,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02429e" sboTerm="SBO:0000247" id="MAM02429e" name="lysyl-proline" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C11H22N3O3">
+      <species metaid="M_MAM02429e" sboTerm="SBO:0000247" id="M_MAM02429e" name="lysyl-proline" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C11H22N3O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02429e">
+            <rdf:Description rdf:about="#M_MAM02429e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM19120"/>
@@ -96462,10 +96514,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03356c" sboTerm="SBO:0000247" id="MAM03356c" name="13,14-Dihydroxy-Retinol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H32O3">
+      <species metaid="M_MAM03356c" sboTerm="SBO:0000247" id="M_MAM03356c" name="13,14-Dihydroxy-Retinol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H32O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03356c">
+            <rdf:Description rdf:about="#M_MAM03356c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/CE5016"/>
@@ -96478,10 +96530,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03323c" sboTerm="SBO:0000247" id="MAM03323c" name="Diazepam" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C16H13ClN2O">
+      <species metaid="M_MAM03323c" sboTerm="SBO:0000247" id="M_MAM03323c" name="Diazepam" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C16H13ClN2O">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03323c">
+            <rdf:Description rdf:about="#M_MAM03323c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/C06948"/>
@@ -96496,10 +96548,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03324c" sboTerm="SBO:0000247" id="MAM03324c" name="Nordazepam" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C15H11ClN2O">
+      <species metaid="M_MAM03324c" sboTerm="SBO:0000247" id="M_MAM03324c" name="Nordazepam" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C15H11ClN2O">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03324c">
+            <rdf:Description rdf:about="#M_MAM03324c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/C07486"/>
@@ -96514,10 +96566,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01831r" sboTerm="SBO:0000247" id="MAM01831r" name="formaldehyde" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="CH2O">
+      <species metaid="M_MAM01831r" sboTerm="SBO:0000247" id="M_MAM01831r" name="formaldehyde" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="CH2O">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01831r">
+            <rdf:Description rdf:about="#M_MAM01831r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/fald"/>
@@ -96534,10 +96586,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03323r" sboTerm="SBO:0000247" id="MAM03323r" name="Diazepam" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C16H13ClN2O">
+      <species metaid="M_MAM03323r" sboTerm="SBO:0000247" id="M_MAM03323r" name="Diazepam" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C16H13ClN2O">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03323r">
+            <rdf:Description rdf:about="#M_MAM03323r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C06948"/>
@@ -96550,10 +96602,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03324r" sboTerm="SBO:0000247" id="MAM03324r" name="Nordazepam" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C15H11ClN2O">
+      <species metaid="M_MAM03324r" sboTerm="SBO:0000247" id="M_MAM03324r" name="Nordazepam" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C15H11ClN2O">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03324r">
+            <rdf:Description rdf:about="#M_MAM03324r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C07486"/>
@@ -96566,10 +96618,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03322c" sboTerm="SBO:0000247" id="MAM03322c" name="Methylcobalamin" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C63CoH91N13O14P">
+      <species metaid="M_MAM03322c" sboTerm="SBO:0000247" id="M_MAM03322c" name="Methylcobalamin" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C63CoH91N13O14P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03322c">
+            <rdf:Description rdf:about="#M_MAM03322c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/C06453"/>
@@ -96582,10 +96634,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02156e" sboTerm="SBO:0000247" id="MAM02156e" name="hypochlorite" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="ClHO">
+      <species metaid="M_MAM02156e" sboTerm="SBO:0000247" id="M_MAM02156e" name="hypochlorite" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="ClHO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02156e">
+            <rdf:Description rdf:about="#M_MAM02156e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM3035"/>
@@ -96598,10 +96650,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01442l" sboTerm="SBO:0000247" id="MAM01442l" name="chloride" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="Cl">
+      <species metaid="M_MAM01442l" sboTerm="SBO:0000247" id="M_MAM01442l" name="chloride" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="Cl">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01442l">
+            <rdf:Description rdf:about="#M_MAM01442l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/cl"/>
@@ -96617,10 +96669,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02156l" sboTerm="SBO:0000247" id="MAM02156l" name="hypochlorite" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="ClHO">
+      <species metaid="M_MAM02156l" sboTerm="SBO:0000247" id="M_MAM02156l" name="hypochlorite" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="ClHO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02156l">
+            <rdf:Description rdf:about="#M_MAM02156l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM3035"/>
@@ -96633,10 +96685,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01442n" sboTerm="SBO:0000247" id="MAM01442n" name="chloride" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="Cl">
+      <species metaid="M_MAM01442n" sboTerm="SBO:0000247" id="M_MAM01442n" name="chloride" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="Cl">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01442n">
+            <rdf:Description rdf:about="#M_MAM01442n">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/cl"/>
@@ -96652,10 +96704,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02156n" sboTerm="SBO:0000247" id="MAM02156n" name="hypochlorite" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="ClHO">
+      <species metaid="M_MAM02156n" sboTerm="SBO:0000247" id="M_MAM02156n" name="hypochlorite" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="ClHO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02156n">
+            <rdf:Description rdf:about="#M_MAM02156n">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM3035"/>
@@ -96668,10 +96720,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02591e" sboTerm="SBO:0000247" id="MAM02591e" name="nitryl-chloride" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="ClNO2">
+      <species metaid="M_MAM02591e" sboTerm="SBO:0000247" id="M_MAM02591e" name="nitryl-chloride" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="ClNO2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02591e">
+            <rdf:Description rdf:about="#M_MAM02591e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM162976"/>
@@ -96684,10 +96736,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02588l" sboTerm="SBO:0000247" id="MAM02588l" name="nitrite" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="NO2">
+      <species metaid="M_MAM02588l" sboTerm="SBO:0000247" id="M_MAM02588l" name="nitrite" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="NO2">
         <annotation>
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-            <rdf:Description rdf:about="#MAM02588l">
+            <rdf:Description rdf:about="#M_MAM02588l">
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@@ -96702,10 +96754,10 @@
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-      <species metaid="MAM02591l" sboTerm="SBO:0000247" id="MAM02591l" name="nitryl-chloride" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="ClNO2">
+      <species metaid="M_MAM02591l" sboTerm="SBO:0000247" id="M_MAM02591l" name="nitryl-chloride" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="ClNO2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02591l">
+            <rdf:Description rdf:about="#M_MAM02591l">
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                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM162976"/>
@@ -96718,10 +96770,10 @@
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+      <species metaid="M_MAM02588n" sboTerm="SBO:0000247" id="M_MAM02588n" name="nitrite" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="NO2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02588n">
+            <rdf:Description rdf:about="#M_MAM02588n">
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                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:16301"/>
@@ -96736,10 +96788,10 @@
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+      <species metaid="M_MAM02591n" sboTerm="SBO:0000247" id="M_MAM02591n" name="nitryl-chloride" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="ClNO2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02591n">
+            <rdf:Description rdf:about="#M_MAM02591n">
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                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM162976"/>
@@ -96752,10 +96804,10 @@
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-      <species metaid="MAM01973e" sboTerm="SBO:0000247" id="MAM01973e" name="glucuronate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H9O7">
+      <species metaid="M_MAM01973e" sboTerm="SBO:0000247" id="M_MAM01973e" name="glucuronate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H9O7">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01973e">
+            <rdf:Description rdf:about="#M_MAM01973e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/glcur"/>
@@ -96771,10 +96823,10 @@
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-      <species metaid="MAM01923e" sboTerm="SBO:0000247" id="MAM01923e" name="gamma-carboxyethyl-hydroxychroman" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C15H19O4">
+      <species metaid="M_MAM01923e" sboTerm="SBO:0000247" id="M_MAM01923e" name="gamma-carboxyethyl-hydroxychroman" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C15H19O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01923e">
+            <rdf:Description rdf:about="#M_MAM01923e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM163392"/>
@@ -96786,10 +96838,10 @@
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         </annotation>
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-      <species metaid="MAM01924e" sboTerm="SBO:0000247" id="MAM01924e" name="gamma-CEHC-glucuronide" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C21H27O10">
+      <species metaid="M_MAM01924e" sboTerm="SBO:0000247" id="M_MAM01924e" name="gamma-CEHC-glucuronide" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C21H27O10">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01924e">
+            <rdf:Description rdf:about="#M_MAM01924e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM163393"/>
@@ -96800,10 +96852,10 @@
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-      <species metaid="MAM01923l" sboTerm="SBO:0000247" id="MAM01923l" name="gamma-carboxyethyl-hydroxychroman" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C15H19O4">
+      <species metaid="M_MAM01923l" sboTerm="SBO:0000247" id="M_MAM01923l" name="gamma-carboxyethyl-hydroxychroman" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C15H19O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01923l">
+            <rdf:Description rdf:about="#M_MAM01923l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM163392"/>
@@ -96815,10 +96867,10 @@
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-      <species metaid="MAM01924l" sboTerm="SBO:0000247" id="MAM01924l" name="gamma-CEHC-glucuronide" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C21H27O10">
+      <species metaid="M_MAM01924l" sboTerm="SBO:0000247" id="M_MAM01924l" name="gamma-CEHC-glucuronide" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C21H27O10">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01924l">
+            <rdf:Description rdf:about="#M_MAM01924l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM163393"/>
@@ -96829,10 +96881,10 @@
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         </annotation>
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-      <species metaid="MAM03335c" sboTerm="SBO:0000247" id="MAM03335c" name="2-Hydroxyamino-3,8-Dimethylimidazo[4,5-F]Quinoxaline" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C11H11N5O">
+      <species metaid="M_MAM03335c" sboTerm="SBO:0000247" id="M_MAM03335c" name="2-Hydroxyamino-3,8-Dimethylimidazo[4,5-F]Quinoxaline" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C11H11N5O">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03335c">
+            <rdf:Description rdf:about="#M_MAM03335c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/CE2615"/>
@@ -96843,10 +96895,10 @@
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         </annotation>
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-      <species metaid="MAM03336c" sboTerm="SBO:0000247" id="MAM03336c" name="2-Hydroxyamino-Meiqx-N2-(Beta-1-Glucosiduronyl)-2-Hydroxyamino-3,8-Dimethylimidazo[4,5-F]Quinoxaline" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C17H18N5O7">
+      <species metaid="M_MAM03336c" sboTerm="SBO:0000247" id="M_MAM03336c" name="2-Hydroxyamino-Meiqx-N2-(Beta-1-Glucosiduronyl)-2-Hydroxyamino-3,8-Dimethylimidazo[4,5-F]Quinoxaline" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C17H18N5O7">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03336c">
+            <rdf:Description rdf:about="#M_MAM03336c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/CE2616"/>
@@ -96856,10 +96908,10 @@
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         </annotation>
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-      <species metaid="MAM03335r" sboTerm="SBO:0000247" id="MAM03335r" name="2-Hydroxyamino-3,8-Dimethylimidazo[4,5-F]Quinoxaline" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C11H11N5O">
+      <species metaid="M_MAM03335r" sboTerm="SBO:0000247" id="M_MAM03335r" name="2-Hydroxyamino-3,8-Dimethylimidazo[4,5-F]Quinoxaline" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C11H11N5O">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03335r">
+            <rdf:Description rdf:about="#M_MAM03335r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/CE2615"/>
@@ -96872,10 +96924,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM03336r" sboTerm="SBO:0000247" id="MAM03336r" name="2-Hydroxyamino-Meiqx-N2-(Beta-1-Glucosiduronyl)-2-Hydroxyamino-3,8-Dimethylimidazo[4,5-F]Quinoxaline" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C17H18N5O7">
+      <species metaid="M_MAM03336r" sboTerm="SBO:0000247" id="M_MAM03336r" name="2-Hydroxyamino-Meiqx-N2-(Beta-1-Glucosiduronyl)-2-Hydroxyamino-3,8-Dimethylimidazo[4,5-F]Quinoxaline" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C17H18N5O7">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03336r">
+            <rdf:Description rdf:about="#M_MAM03336r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/CE2616"/>
@@ -96887,10 +96939,10 @@
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         </annotation>
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-      <species metaid="MAM00751c" sboTerm="SBO:0000247" id="MAM00751c" name="3alpha,7alpha,12alpha-trihydroxy-5beta-cholestan-27-al" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H46O4">
+      <species metaid="M_MAM00751c" sboTerm="SBO:0000247" id="M_MAM00751c" name="3alpha,7alpha,12alpha-trihydroxy-5beta-cholestan-27-al" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H46O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00751c">
+            <rdf:Description rdf:about="#M_MAM00751c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:48940"/>
@@ -96904,10 +96956,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01087c" sboTerm="SBO:0000247" id="MAM01087c" name="5beta-cholestane-3alpha,7alpha,12alpha,24s,25-pentol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H48O5">
+      <species metaid="M_MAM01087c" sboTerm="SBO:0000247" id="M_MAM01087c" name="5beta-cholestane-3alpha,7alpha,12alpha,24s,25-pentol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H48O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01087c">
+            <rdf:Description rdf:about="#M_MAM01087c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/hmdb/HMDB02208"/>
@@ -96922,10 +96974,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM00747c" sboTerm="SBO:0000247" id="MAM00747c" name="3alpha,7alpha,12alpha,25-tetrahydroxy-5beta-cholestane-24-one" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H46O5">
+      <species metaid="M_MAM00747c" sboTerm="SBO:0000247" id="M_MAM00747c" name="3alpha,7alpha,12alpha,25-tetrahydroxy-5beta-cholestane-24-one" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H46O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00747c">
+            <rdf:Description rdf:about="#M_MAM00747c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM151029"/>
@@ -96937,10 +96989,10 @@
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         </annotation>
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-      <species metaid="MAM03107e" sboTerm="SBO:0000247" id="MAM03107e" name="UDP-galactose" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C15H22N2O17P2">
+      <species metaid="M_MAM03107e" sboTerm="SBO:0000247" id="M_MAM03107e" name="UDP-galactose" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C15H22N2O17P2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03107e">
+            <rdf:Description rdf:about="#M_MAM03107e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/udpgal"/>
@@ -96956,10 +97008,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01679e" sboTerm="SBO:0000247" id="MAM01679e" name="D-galactosyl-N-acylsphingosine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C24H46NO7RCO">
+      <species metaid="M_MAM01679e" sboTerm="SBO:0000247" id="M_MAM01679e" name="D-galactosyl-N-acylsphingosine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C24H46NO7RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01679e">
+            <rdf:Description rdf:about="#M_MAM01679e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/galside_hs"/>
@@ -96973,10 +97025,10 @@
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         </annotation>
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-      <species metaid="MAM01430e" sboTerm="SBO:0000247" id="MAM01430e" name="ceramide pool" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H36NO2RCO">
+      <species metaid="M_MAM01430e" sboTerm="SBO:0000247" id="M_MAM01430e" name="ceramide pool" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H36NO2RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01430e">
+            <rdf:Description rdf:about="#M_MAM01430e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/crm_hs"/>
@@ -96991,10 +97043,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM03107n" sboTerm="SBO:0000247" id="MAM03107n" name="UDP-galactose" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C15H22N2O17P2">
+      <species metaid="M_MAM03107n" sboTerm="SBO:0000247" id="M_MAM03107n" name="UDP-galactose" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C15H22N2O17P2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03107n">
+            <rdf:Description rdf:about="#M_MAM03107n">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/udpgal"/>
@@ -97010,10 +97062,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM01679n" sboTerm="SBO:0000247" id="MAM01679n" name="D-galactosyl-N-acylsphingosine" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C24H46NO7RCO">
+      <species metaid="M_MAM01679n" sboTerm="SBO:0000247" id="M_MAM01679n" name="D-galactosyl-N-acylsphingosine" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C24H46NO7RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01679n">
+            <rdf:Description rdf:about="#M_MAM01679n">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/galside_hs"/>
@@ -97027,10 +97079,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM01430n" sboTerm="SBO:0000247" id="MAM01430n" name="ceramide pool" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H36NO2RCO">
+      <species metaid="M_MAM01430n" sboTerm="SBO:0000247" id="M_MAM01430n" name="ceramide pool" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H36NO2RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01430n">
+            <rdf:Description rdf:about="#M_MAM01430n">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/crm_hs"/>
@@ -97045,10 +97097,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03121n" sboTerm="SBO:0000247" id="MAM03121n" name="urea" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="CH4N2O">
+      <species metaid="M_MAM03121n" sboTerm="SBO:0000247" id="M_MAM03121n" name="urea" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="CH4N2O">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03121n">
+            <rdf:Description rdf:about="#M_MAM03121n">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/urea"/>
@@ -97065,10 +97117,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03120n" sboTerm="SBO:0000247" id="MAM03120n" name="urate" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H4N4O3">
+      <species metaid="M_MAM03120n" sboTerm="SBO:0000247" id="M_MAM03120n" name="urate" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H4N4O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03120n">
+            <rdf:Description rdf:about="#M_MAM03120n">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/urate"/>
@@ -97085,10 +97137,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01315n" sboTerm="SBO:0000247" id="MAM01315n" name="alloxan" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C4N2O4">
+      <species metaid="M_MAM01315n" sboTerm="SBO:0000247" id="M_MAM01315n" name="alloxan" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C4N2O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01315n">
+            <rdf:Description rdf:about="#M_MAM01315n">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:730073"/>
@@ -97103,10 +97155,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00177c" sboTerm="SBO:0000247" id="MAM00177c" name="(S)-3-hydroxypalmitoleoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C37H60N7O18P3S">
+      <species metaid="M_MAM00177c" sboTerm="SBO:0000247" id="M_MAM00177c" name="(S)-3-hydroxypalmitoleoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C37H60N7O18P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00177c">
+            <rdf:Description rdf:about="#M_MAM00177c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM31749"/>
@@ -97118,10 +97170,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00894c" sboTerm="SBO:0000247" id="MAM00894c" name="3-oxopalmitoleoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C37H58N7O18P3S">
+      <species metaid="M_MAM00894c" sboTerm="SBO:0000247" id="M_MAM00894c" name="3-oxopalmitoleoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C37H58N7O18P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00894c">
+            <rdf:Description rdf:about="#M_MAM00894c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM166250"/>
@@ -97134,10 +97186,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01574c" sboTerm="SBO:0000247" id="MAM01574c" name="cis-(3S)-hydroxytetradec-7-enoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C35H56N7O18P3S">
+      <species metaid="M_MAM01574c" sboTerm="SBO:0000247" id="M_MAM01574c" name="cis-(3S)-hydroxytetradec-7-enoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C35H56N7O18P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01574c">
+            <rdf:Description rdf:about="#M_MAM01574c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM167439"/>
@@ -97148,10 +97200,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00886c" sboTerm="SBO:0000247" id="MAM00886c" name="3-oxomyrist-7-enoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C35H54N7O18P3S">
+      <species metaid="M_MAM00886c" sboTerm="SBO:0000247" id="M_MAM00886c" name="3-oxomyrist-7-enoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C35H54N7O18P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00886c">
+            <rdf:Description rdf:about="#M_MAM00886c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM166248"/>
@@ -97163,10 +97215,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03334c" sboTerm="SBO:0000247" id="MAM03334c" name="3(S)-3-Hydroxydodecen-(5Z)-Oyl Coenzyme A" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C33H52N7O18P3S">
+      <species metaid="M_MAM03334c" sboTerm="SBO:0000247" id="M_MAM03334c" name="3(S)-3-Hydroxydodecen-(5Z)-Oyl Coenzyme A" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C33H52N7O18P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03334c">
+            <rdf:Description rdf:about="#M_MAM03334c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/CE2597"/>
@@ -97179,10 +97231,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03326c" sboTerm="SBO:0000247" id="MAM03326c" name="3-Oxolaur-Cis-5-Enoyl Coenzyme A" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C33H50N7O18P3S">
+      <species metaid="M_MAM03326c" sboTerm="SBO:0000247" id="M_MAM03326c" name="3-Oxolaur-Cis-5-Enoyl Coenzyme A" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C33H50N7O18P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03326c">
+            <rdf:Description rdf:about="#M_MAM03326c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/CE0692"/>
@@ -97194,10 +97246,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03334m" sboTerm="SBO:0000247" id="MAM03334m" name="3(S)-3-Hydroxydodecen-(5Z)-Oyl Coenzyme A" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C33H52N7O18P3S">
+      <species metaid="M_MAM03334m" sboTerm="SBO:0000247" id="M_MAM03334m" name="3(S)-3-Hydroxydodecen-(5Z)-Oyl Coenzyme A" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C33H52N7O18P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03334m">
+            <rdf:Description rdf:about="#M_MAM03334m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/pubchem.compound/53481515"/>
@@ -97208,10 +97260,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03334x" sboTerm="SBO:0000247" id="MAM03334x" name="3(S)-3-Hydroxydodecen-(5Z)-Oyl Coenzyme A" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C33H52N7O18P3S">
+      <species metaid="M_MAM03334x" sboTerm="SBO:0000247" id="M_MAM03334x" name="3(S)-3-Hydroxydodecen-(5Z)-Oyl Coenzyme A" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C33H52N7O18P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03334x">
+            <rdf:Description rdf:about="#M_MAM03334x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/pubchem.compound/53481515"/>
@@ -97222,10 +97274,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03326x" sboTerm="SBO:0000247" id="MAM03326x" name="3-Oxolaur-Cis-5-Enoyl Coenzyme A" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C33H50N7O18P3S">
+      <species metaid="M_MAM03326x" sboTerm="SBO:0000247" id="M_MAM03326x" name="3-Oxolaur-Cis-5-Enoyl Coenzyme A" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C33H50N7O18P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03326x">
+            <rdf:Description rdf:about="#M_MAM03326x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/CE0692"/>
@@ -97235,10 +97287,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03319c" sboTerm="SBO:0000247" id="MAM03319c" name="1-Acylglycerone 3-Phosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C4H4O7PR">
+      <species metaid="M_MAM03319c" sboTerm="SBO:0000247" id="M_MAM03319c" name="1-Acylglycerone 3-Phosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C4H4O7PR">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03319c">
+            <rdf:Description rdf:about="#M_MAM03319c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:15835"/>
@@ -97250,10 +97302,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM02675m" sboTerm="SBO:0000247" id="MAM02675m" name="palmitolate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C16H29O2">
+      <species metaid="M_MAM02675m" sboTerm="SBO:0000247" id="M_MAM02675m" name="palmitolate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C16H29O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02675m">
+            <rdf:Description rdf:about="#M_MAM02675m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hdcea"/>
@@ -97270,10 +97322,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM02675x" sboTerm="SBO:0000247" id="MAM02675x" name="palmitolate" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C16H29O2">
+      <species metaid="M_MAM02675x" sboTerm="SBO:0000247" id="M_MAM02675x" name="palmitolate" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C16H29O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02675x">
+            <rdf:Description rdf:about="#M_MAM02675x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hdcea"/>
@@ -97290,10 +97342,10 @@
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         </annotation>
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-      <species metaid="MAM03333m" sboTerm="SBO:0000247" id="MAM03333m" name="Trans,Cis-Dodeca-2,5-Dienoyl Coenzyme A" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C33H50N7O17P3S">
+      <species metaid="M_MAM03333m" sboTerm="SBO:0000247" id="M_MAM03333m" name="Trans,Cis-Dodeca-2,5-Dienoyl Coenzyme A" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C33H50N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03333m">
+            <rdf:Description rdf:about="#M_MAM03333m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/CE2596"/>
@@ -97303,10 +97355,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM03333x" sboTerm="SBO:0000247" id="MAM03333x" name="Trans,Cis-Dodeca-2,5-Dienoyl Coenzyme A" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C33H50N7O17P3S">
+      <species metaid="M_MAM03333x" sboTerm="SBO:0000247" id="M_MAM03333x" name="Trans,Cis-Dodeca-2,5-Dienoyl Coenzyme A" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C33H50N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03333x">
+            <rdf:Description rdf:about="#M_MAM03333x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/CE2596"/>
@@ -97316,10 +97368,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02736g" sboTerm="SBO:0000247" id="MAM02736g" name="phosphatidylinositol-4,5-bisphosphate" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C11H14O19P3R2">
+      <species metaid="M_MAM02736g" sboTerm="SBO:0000247" id="M_MAM02736g" name="phosphatidylinositol-4,5-bisphosphate" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C11H14O19P3R2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02736g">
+            <rdf:Description rdf:about="#M_MAM02736g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pail45p_hs"/>
@@ -97333,10 +97385,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02736r" sboTerm="SBO:0000247" id="MAM02736r" name="phosphatidylinositol-4,5-bisphosphate" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C11H14O19P3R2">
+      <species metaid="M_MAM02736r" sboTerm="SBO:0000247" id="M_MAM02736r" name="phosphatidylinositol-4,5-bisphosphate" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C11H14O19P3R2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02736r">
+            <rdf:Description rdf:about="#M_MAM02736r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pail45p_hs"/>
@@ -97350,10 +97402,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02735n" sboTerm="SBO:0000247" id="MAM02735n" name="phosphatidylinositol-3,5-bisphosphate" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C11H14O19P3R2">
+      <species metaid="M_MAM02735n" sboTerm="SBO:0000247" id="M_MAM02735n" name="phosphatidylinositol-3,5-bisphosphate" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C11H14O19P3R2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02735n">
+            <rdf:Description rdf:about="#M_MAM02735n">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pail35p_hs"/>
@@ -97367,10 +97419,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00552g" sboTerm="SBO:0000247" id="MAM00552g" name="1-phosphatidyl-1D-myo-inositol-3-phosphate" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C11H15O16P2R2">
+      <species metaid="M_MAM00552g" sboTerm="SBO:0000247" id="M_MAM00552g" name="1-phosphatidyl-1D-myo-inositol-3-phosphate" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C11H15O16P2R2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00552g">
+            <rdf:Description rdf:about="#M_MAM00552g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pail3p_hs"/>
@@ -97384,10 +97436,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03320c" sboTerm="SBO:0000247" id="MAM03320c" name="1-Alkyl-Sn-Glycerol 3-Phosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C3H6O6PR">
+      <species metaid="M_MAM03320c" sboTerm="SBO:0000247" id="M_MAM03320c" name="1-Alkyl-Sn-Glycerol 3-Phosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C3H6O6PR">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03320c">
+            <rdf:Description rdf:about="#M_MAM03320c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C03968"/>
@@ -97398,10 +97450,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03358m" sboTerm="SBO:0000247" id="MAM03358m" name="(3E,5Z,8Z)-Tetradecatrienoyl Coenzyme A" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C35H52N7O17P3S">
+      <species metaid="M_MAM03358m" sboTerm="SBO:0000247" id="M_MAM03358m" name="(3E,5Z,8Z)-Tetradecatrienoyl Coenzyme A" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C35H52N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03358m">
+            <rdf:Description rdf:about="#M_MAM03358m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/CE5117"/>
@@ -97413,10 +97465,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03359m" sboTerm="SBO:0000247" id="MAM03359m" name="Trans-2-Cis,Cis-4,8-Tetradecatrienoyl Coenzyme A" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C35H52N7O17P3S">
+      <species metaid="M_MAM03359m" sboTerm="SBO:0000247" id="M_MAM03359m" name="Trans-2-Cis,Cis-4,8-Tetradecatrienoyl Coenzyme A" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C35H52N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03359m">
+            <rdf:Description rdf:about="#M_MAM03359m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/CE5118"/>
@@ -97427,10 +97479,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03360m" sboTerm="SBO:0000247" id="MAM03360m" name="Trans-3-Cis-8-Tetradecadienoyl Coenzyme A" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C35H54N7O17P3S">
+      <species metaid="M_MAM03360m" sboTerm="SBO:0000247" id="M_MAM03360m" name="Trans-3-Cis-8-Tetradecadienoyl Coenzyme A" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C35H54N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03360m">
+            <rdf:Description rdf:about="#M_MAM03360m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/CE5119"/>
@@ -97441,10 +97493,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03361m" sboTerm="SBO:0000247" id="MAM03361m" name="Trans-2-Cis-8-Tetradecadienoyl Coenzyme A" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C35H54N7O17P3S">
+      <species metaid="M_MAM03361m" sboTerm="SBO:0000247" id="M_MAM03361m" name="Trans-2-Cis-8-Tetradecadienoyl Coenzyme A" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C35H54N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03361m">
+            <rdf:Description rdf:about="#M_MAM03361m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/CE5120"/>
@@ -97455,10 +97507,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03350m" sboTerm="SBO:0000247" id="MAM03350m" name="(3S)-3-Hydroxy-Cis-8-Tetradecenoyl Coenzyme A" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C35H56N7O18P3S">
+      <species metaid="M_MAM03350m" sboTerm="SBO:0000247" id="M_MAM03350m" name="(3S)-3-Hydroxy-Cis-8-Tetradecenoyl Coenzyme A" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C35H56N7O18P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03350m">
+            <rdf:Description rdf:about="#M_MAM03350m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/CE4790"/>
@@ -97470,10 +97522,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03351m" sboTerm="SBO:0000247" id="MAM03351m" name="3-Oxo-Cis-8-Tetradecenoyl Coenzyme A" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C35H54N7O18P3S">
+      <species metaid="M_MAM03351m" sboTerm="SBO:0000247" id="M_MAM03351m" name="3-Oxo-Cis-8-Tetradecenoyl Coenzyme A" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C35H54N7O18P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03351m">
+            <rdf:Description rdf:about="#M_MAM03351m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/CE4792"/>
@@ -97484,10 +97536,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03352m" sboTerm="SBO:0000247" id="MAM03352m" name="Cis-6-Dodecenoyl Coenzyme A" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C33H52N7O17P3S">
+      <species metaid="M_MAM03352m" sboTerm="SBO:0000247" id="M_MAM03352m" name="Cis-6-Dodecenoyl Coenzyme A" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C33H52N7O17P3S">
         <annotation>
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-            <rdf:Description rdf:about="#MAM03352m">
+            <rdf:Description rdf:about="#M_MAM03352m">
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                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/CE4794"/>
@@ -97498,10 +97550,10 @@
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-      <species metaid="MAM03317c" sboTerm="SBO:0000247" id="MAM03317c" name="1-Alkyl-2-Acetyl-Sn-Glycerol 3-Phosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C5H8O7PR">
+      <species metaid="M_MAM03317c" sboTerm="SBO:0000247" id="M_MAM03317c" name="1-Alkyl-2-Acetyl-Sn-Glycerol 3-Phosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C5H8O7PR">
         <annotation>
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-            <rdf:Description rdf:about="#MAM03317c">
+            <rdf:Description rdf:about="#M_MAM03317c">
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                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C01264"/>
@@ -97512,10 +97564,10 @@
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-      <species metaid="MAM03362x" sboTerm="SBO:0000247" id="MAM03362x" name="3(S)-Phytanoyl Coenzyme A" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H70N7O17P3S">
+      <species metaid="M_MAM03362x" sboTerm="SBO:0000247" id="M_MAM03362x" name="3(S)-Phytanoyl Coenzyme A" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H70N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03362x">
+            <rdf:Description rdf:about="#M_MAM03362x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:15538"/>
@@ -97527,10 +97579,10 @@
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-      <species metaid="MAM03363x" sboTerm="SBO:0000247" id="MAM03363x" name="3(S)-2-Hydroxyphytanoyl Coenzyme A" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H70N7O18P3S">
+      <species metaid="M_MAM03363x" sboTerm="SBO:0000247" id="M_MAM03363x" name="3(S)-2-Hydroxyphytanoyl Coenzyme A" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H70N7O18P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03363x">
+            <rdf:Description rdf:about="#M_MAM03363x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/pubchem.compound/441263"/>
@@ -97541,10 +97593,10 @@
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-      <species metaid="MAM03362c" sboTerm="SBO:0000247" id="MAM03362c" name="3(S)-Phytanoyl Coenzyme A" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H70N7O17P3S">
+      <species metaid="M_MAM03362c" sboTerm="SBO:0000247" id="M_MAM03362c" name="3(S)-Phytanoyl Coenzyme A" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H70N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03362c">
+            <rdf:Description rdf:about="#M_MAM03362c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/CE5122"/>
@@ -97558,10 +97610,10 @@
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-      <species metaid="MAM00075c" sboTerm="SBO:0000247" id="MAM00075c" name="(2R)-pristanoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C40H68N7O17P3S">
+      <species metaid="M_MAM00075c" sboTerm="SBO:0000247" id="M_MAM00075c" name="(2R)-pristanoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C40H68N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00075c">
+            <rdf:Description rdf:about="#M_MAM00075c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:20067"/>
@@ -97575,10 +97627,10 @@
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-      <species metaid="MAM01736l" sboTerm="SBO:0000247" id="MAM01736l" name="dopamine" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C8H12NO2">
+      <species metaid="M_MAM01736l" sboTerm="SBO:0000247" id="M_MAM01736l" name="dopamine" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C8H12NO2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01736l">
+            <rdf:Description rdf:about="#M_MAM01736l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dopa"/>
@@ -97594,10 +97646,10 @@
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         </annotation>
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-      <species metaid="MAM01738l" sboTerm="SBO:0000247" id="MAM01738l" name="dopamine-O-quinone" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C8H10NO2">
+      <species metaid="M_MAM01738l" sboTerm="SBO:0000247" id="M_MAM01738l" name="dopamine-O-quinone" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C8H10NO2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01738l">
+            <rdf:Description rdf:about="#M_MAM01738l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM5727"/>
@@ -97609,10 +97661,10 @@
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-      <species metaid="MAM01736x" sboTerm="SBO:0000247" id="MAM01736x" name="dopamine" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C8H12NO2">
+      <species metaid="M_MAM01736x" sboTerm="SBO:0000247" id="M_MAM01736x" name="dopamine" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C8H12NO2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01736x">
+            <rdf:Description rdf:about="#M_MAM01736x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dopa"/>
@@ -97628,10 +97680,10 @@
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         </annotation>
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-      <species metaid="MAM00859r" sboTerm="SBO:0000247" id="MAM00859r" name="3-oxo-dihomo-gamma-linolenoyl-CoA" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H62N7O18P3S">
+      <species metaid="M_MAM00859r" sboTerm="SBO:0000247" id="M_MAM00859r" name="3-oxo-dihomo-gamma-linolenoyl-CoA" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H62N7O18P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00859r">
+            <rdf:Description rdf:about="#M_MAM00859r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM166236"/>
@@ -97642,10 +97694,10 @@
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-      <species metaid="MAM03029r" sboTerm="SBO:0000247" id="MAM03029r" name="trans-2-cis,cis,cis-8,11,14-eicosatetraenoyl-CoA" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H62N7O17P3S">
+      <species metaid="M_MAM03029r" sboTerm="SBO:0000247" id="M_MAM03029r" name="trans-2-cis,cis,cis-8,11,14-eicosatetraenoyl-CoA" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H62N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03029r">
+            <rdf:Description rdf:about="#M_MAM03029r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM165187"/>
@@ -97656,10 +97708,10 @@
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         </annotation>
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-      <species metaid="MAM01769r" sboTerm="SBO:0000247" id="MAM01769r" name="eicosa-(2E,8Z,11Z,14Z,17Z)-pentaenoyl-CoA" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H60N7O17P3S">
+      <species metaid="M_MAM01769r" sboTerm="SBO:0000247" id="M_MAM01769r" name="eicosa-(2E,8Z,11Z,14Z,17Z)-pentaenoyl-CoA" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H60N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01769r">
+            <rdf:Description rdf:about="#M_MAM01769r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM164756"/>
@@ -97670,10 +97722,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM00811r" sboTerm="SBO:0000247" id="MAM00811r" name="3-keto-eicosa-8,11,14,17-all-cis-tetraenoyl-CoA" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H60N7O18P3S">
+      <species metaid="M_MAM00811r" sboTerm="SBO:0000247" id="M_MAM00811r" name="3-keto-eicosa-8,11,14,17-all-cis-tetraenoyl-CoA" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H60N7O18P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00811r">
+            <rdf:Description rdf:about="#M_MAM00811r">
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                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM164249"/>
@@ -97684,10 +97736,10 @@
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         </annotation>
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-      <species metaid="MAM01069m" sboTerm="SBO:0000247" id="MAM01069m" name="5-alpha-dihydrotestosterone" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H30O2">
+      <species metaid="M_MAM01069m" sboTerm="SBO:0000247" id="M_MAM01069m" name="5-alpha-dihydrotestosterone" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H30O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01069m">
+            <rdf:Description rdf:about="#M_MAM01069m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/5adtststerone"/>
@@ -97706,10 +97758,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM01336m" sboTerm="SBO:0000247" id="MAM01336m" name="androstenediol" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H30O2">
+      <species metaid="M_MAM01336m" sboTerm="SBO:0000247" id="M_MAM01336m" name="androstenediol" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H30O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01336m">
+            <rdf:Description rdf:about="#M_MAM01336m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:2710"/>
@@ -97726,10 +97778,10 @@
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-      <species metaid="MAM00708r" sboTerm="SBO:0000247" id="MAM00708r" name="3(S)-hydroxy-all-cis-8,11,14,17-eicosatetraenoyl-CoA" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H62N7O18P3S">
+      <species metaid="M_MAM00708r" sboTerm="SBO:0000247" id="M_MAM00708r" name="3(S)-hydroxy-all-cis-8,11,14,17-eicosatetraenoyl-CoA" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H62N7O18P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00708r">
+            <rdf:Description rdf:about="#M_MAM00708r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM7114"/>
@@ -97740,10 +97792,10 @@
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         </annotation>
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-      <species metaid="MAM00679r" sboTerm="SBO:0000247" id="MAM00679r" name="2-trans-7,10,13,16,19-all-cis-docosahexaenoyl-CoA" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C43H62N7O17P3S">
+      <species metaid="M_MAM00679r" sboTerm="SBO:0000247" id="M_MAM00679r" name="2-trans-7,10,13,16,19-all-cis-docosahexaenoyl-CoA" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C43H62N7O17P3S">
         <annotation>
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-            <rdf:Description rdf:about="#MAM00679r">
+            <rdf:Description rdf:about="#M_MAM00679r">
               <bqbiol:is>
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@@ -97754,10 +97806,10 @@
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@@ -97768,10 +97820,10 @@
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@@ -97782,10 +97834,10 @@
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@@ -97796,10 +97848,10 @@
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@@ -97811,10 +97863,10 @@
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+      <species metaid="M_MAM00853r" sboTerm="SBO:0000247" id="M_MAM00853r" name="3-oxo-all-cis-6,9,12,15,18-tetracosapentaenoyl-CoA" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C45H66N7O18P3S">
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+            <rdf:Description rdf:about="#M_MAM00853r">
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@@ -97825,10 +97877,10 @@
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+      <species metaid="M_MAM00718r" sboTerm="SBO:0000247" id="M_MAM00718r" name="3(S)-hydroxy-tetracosa-9,12,15,18,21-all-cis-pentaenoyl-CoA" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C45H68N7O18P3S">
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@@ -97839,10 +97891,10 @@
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+      <species metaid="M_MAM01450n" sboTerm="SBO:0000247" id="M_MAM01450n" name="cholesterol" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H46O">
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+            <rdf:Description rdf:about="#M_MAM01450n">
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@@ -97860,10 +97912,10 @@
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+      <species metaid="M_MAM03331c" sboTerm="SBO:0000247" id="M_MAM03331c" name="4,4-Dimethylcholesta-8(9),14-Dien-3Beta-Ol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C29H48O">
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+            <rdf:Description rdf:about="#M_MAM03331c">
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@@ -97876,10 +97928,10 @@
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+      <species metaid="M_MAM03331r" sboTerm="SBO:0000247" id="M_MAM03331r" name="4,4-Dimethylcholesta-8(9),14-Dien-3Beta-Ol" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C29H48O">
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@@ -97892,10 +97944,10 @@
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+      <species metaid="M_MAM00943r" sboTerm="SBO:0000247" id="M_MAM00943r" name="4,4-dimethyl-5alpha-cholesta-8-en-3-beta-ol" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C29H50O">
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+            <rdf:Description rdf:about="#M_MAM00943r">
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@@ -97911,10 +97963,10 @@
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+      <species metaid="M_MAM03377c" sboTerm="SBO:0000247" id="M_MAM03377c" name="24,25,26,27-Tetranor-23-Oxo-Hydroxyvitamin D3" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H34O3">
         <annotation>
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+            <rdf:Description rdf:about="#M_MAM03377c">
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@@ -97927,10 +97979,10 @@
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+      <species metaid="M_MAM03377m" sboTerm="SBO:0000247" id="M_MAM03377m" name="24,25,26,27-Tetranor-23-Oxo-Hydroxyvitamin D3" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H34O3">
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+            <rdf:Description rdf:about="#M_MAM03377m">
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@@ -97943,10 +97995,10 @@
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+      <species metaid="M_MAM03354c" sboTerm="SBO:0000247" id="M_MAM03354c" name="Tetracosa-9,12,15,18-All-Cis-Tetraenoyl Coenzyme A" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C45H70N7O17P3S">
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+            <rdf:Description rdf:about="#M_MAM03354c">
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@@ -97962,10 +98014,10 @@
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+      <species metaid="M_MAM00681r" sboTerm="SBO:0000247" id="M_MAM00681r" name="2-trans-9,12,15,18-all-cis-tetracosapentaenoyl-CoA" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C45H68N7O17P3S">
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@@ -97977,10 +98029,10 @@
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+      <species metaid="M_MAM03354r" sboTerm="SBO:0000247" id="M_MAM03354r" name="Tetracosa-9,12,15,18-All-Cis-Tetraenoyl Coenzyme A" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C45H70N7O17P3S">
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@@ -97996,10 +98048,10 @@
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+      <species metaid="M_MAM00864r" sboTerm="SBO:0000247" id="M_MAM00864r" name="3-oxo-docosa-7,10,13,16-all-cis-tetraenoyl-CoA" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C43H64N7O18P3S">
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@@ -98010,10 +98062,10 @@
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+      <species metaid="M_MAM00714r" sboTerm="SBO:0000247" id="M_MAM00714r" name="3(S)-hydroxy-docosa-7,10,13,16-all-cis-tetraenoyl-CoA" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C43H66N7O18P3S">
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@@ -98024,10 +98076,10 @@
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+      <species metaid="M_MAM00074r" sboTerm="SBO:0000247" id="M_MAM00074r" name="(2E,7Z,10Z,13Z,16Z)-docosapentaenoyl-CoA" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C43H64N7O17P3S">
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@@ -98038,10 +98090,10 @@
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+      <species metaid="M_MAM00903r" sboTerm="SBO:0000247" id="M_MAM00903r" name="3-oxo-tetracosa-9,12,15,18-all-cis-tetraenoyl-CoA" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C45H68N7O18P3S">
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@@ -98052,10 +98104,10 @@
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+      <species metaid="M_MAM00716r" sboTerm="SBO:0000247" id="M_MAM00716r" name="3(S)-hydroxy-tetracosa-12,15,18,21-all-cis-tetraenoyl-CoA" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C45H70N7O18P3S">
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@@ -98066,10 +98118,10 @@
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+      <species metaid="M_MAM00870r" sboTerm="SBO:0000247" id="M_MAM00870r" name="3-oxoeicosa-cis,cis-11,14-dienoyl-CoA" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H64N7O18P3S">
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@@ -98080,10 +98132,10 @@
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+      <species metaid="M_MAM00087r" sboTerm="SBO:0000247" id="M_MAM00087r" name="(3S)-hydroxy-eicosa-cis,cis-11,14-dienoyl-CoA" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H66N7O18P3S">
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@@ -98094,10 +98146,10 @@
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+      <species metaid="M_MAM03007r" sboTerm="SBO:0000247" id="M_MAM03007r" name="trans,cis,cis-2,11,14-eicosatrienoyl-CoA" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H64N7O17P3S">
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@@ -98108,10 +98160,10 @@
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+      <species metaid="M_MAM00865r" sboTerm="SBO:0000247" id="M_MAM00865r" name="3-oxo-docosa-cis,cis,cis-10,13,16-trienoyl-CoA" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C43H66N7O18P3S">
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@@ -98122,10 +98174,10 @@
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+      <species metaid="M_MAM00698r" sboTerm="SBO:0000247" id="M_MAM00698r" name="3(S)-hydroxy-10,13,16-all-cis-docosatrienoyl-CoA" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C43H68N7O18P3S">
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-            <rdf:Description rdf:about="#MAM00698r">
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@@ -98136,10 +98188,10 @@
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+      <species metaid="M_MAM03004r" sboTerm="SBO:0000247" id="M_MAM03004r" name="trans,cis,cis,cis-2,10,13,16-docosatetraenoyl-CoA" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C43H66N7O17P3S">
         <annotation>
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+            <rdf:Description rdf:about="#M_MAM03004r">
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@@ -98150,10 +98202,10 @@
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+      <species metaid="M_MAM03002r" sboTerm="SBO:0000247" id="M_MAM03002r" name="trans,cis,cis,cis,cis-2,10,13,16,19-docosapentaenoyl-CoA" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C43H64N7O17P3S">
         <annotation>
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-            <rdf:Description rdf:about="#MAM03002r">
+            <rdf:Description rdf:about="#M_MAM03002r">
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@@ -98164,10 +98216,10 @@
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+      <species metaid="M_MAM00861r" sboTerm="SBO:0000247" id="M_MAM00861r" name="3-oxo-docosa-10,13,16,19-all-cis-tetraenoyl-CoA" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C43H64N7O18P3S">
         <annotation>
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+            <rdf:Description rdf:about="#M_MAM00861r">
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@@ -98178,10 +98230,10 @@
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+      <species metaid="M_MAM00711r" sboTerm="SBO:0000247" id="M_MAM00711r" name="3(S)-hydroxy-docosa-10,13,16,19-all-cis-tetraenoyl-CoA" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C43H66N7O18P3S">
         <annotation>
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-            <rdf:Description rdf:about="#MAM00711r">
+            <rdf:Description rdf:about="#M_MAM00711r">
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@@ -98192,10 +98244,10 @@
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+      <species metaid="M_MAM03003r" sboTerm="SBO:0000247" id="M_MAM03003r" name="trans,cis,cis,cis,cis-2,12,15,18,21-tetracosapentaenoyl-CoA" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C45H68N7O17P3S">
         <annotation>
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-            <rdf:Description rdf:about="#MAM03003r">
+            <rdf:Description rdf:about="#M_MAM03003r">
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@@ -98206,10 +98258,10 @@
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+      <species metaid="M_MAM00901r" sboTerm="SBO:0000247" id="M_MAM00901r" name="3-oxo-tetracosa-12,15,18,21-all-cis-tetraenoyl-CoA" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C45H68N7O18P3S">
         <annotation>
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+            <rdf:Description rdf:about="#M_MAM00901r">
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@@ -98220,10 +98272,10 @@
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+      <species metaid="M_MAM03357c" sboTerm="SBO:0000247" id="M_MAM03357c" name="One Carbon Unit" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="CH2">
         <annotation>
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-            <rdf:Description rdf:about="#MAM03357c">
+            <rdf:Description rdf:about="#M_MAM03357c">
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@@ -98234,10 +98286,10 @@
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+      <species metaid="M_MAM00840r" sboTerm="SBO:0000247" id="M_MAM00840r" name="3-oxo-11-cis-eicosenoyl-CoA" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H66N7O18P3S">
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+            <rdf:Description rdf:about="#M_MAM00840r">
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@@ -98248,10 +98300,10 @@
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+      <species metaid="M_MAM00842r" sboTerm="SBO:0000247" id="M_MAM00842r" name="3-oxo-13cis-docosenoyl-CoA" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C43H70N7O18P3S">
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+            <rdf:Description rdf:about="#M_MAM00842r">
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@@ -98262,10 +98314,10 @@
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+      <species metaid="M_MAM00856r" sboTerm="SBO:0000247" id="M_MAM00856r" name="3-oxo-cis-15-tetracosaenoyl-CoA" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C45H74N7O18P3S">
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-            <rdf:Description rdf:about="#MAM00856r">
+            <rdf:Description rdf:about="#M_MAM00856r">
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@@ -98276,10 +98328,10 @@
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+      <species metaid="M_MAM00700r" sboTerm="SBO:0000247" id="M_MAM00700r" name="3(S)-hydroxy-11-cis-eicosenoyl-CoA" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H68N7O18P3S">
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-            <rdf:Description rdf:about="#MAM00700r">
+            <rdf:Description rdf:about="#M_MAM00700r">
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@@ -98290,10 +98342,10 @@
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+      <species metaid="M_MAM03012r" sboTerm="SBO:0000247" id="M_MAM03012r" name="trans,cis-2,11-eicosadienoyl-CoA" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H66N7O17P3S">
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-            <rdf:Description rdf:about="#MAM03012r">
+            <rdf:Description rdf:about="#M_MAM03012r">
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                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM163588"/>
@@ -98304,10 +98356,10 @@
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+      <species metaid="M_MAM00701r" sboTerm="SBO:0000247" id="M_MAM00701r" name="3(S)-hydroxy-13-cis-docosenoyl-CoA" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C43H72N7O18P3S">
         <annotation>
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-            <rdf:Description rdf:about="#MAM00701r">
+            <rdf:Description rdf:about="#M_MAM00701r">
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                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM163173"/>
@@ -98318,10 +98370,10 @@
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+      <species metaid="M_MAM03013r" sboTerm="SBO:0000247" id="M_MAM03013r" name="trans,cis-2,13-docosadienoyl-CoA" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C43H70N7O17P3S">
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-            <rdf:Description rdf:about="#MAM03013r">
+            <rdf:Description rdf:about="#M_MAM03013r">
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@@ -98332,10 +98384,10 @@
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+      <species metaid="M_MAM00709r" sboTerm="SBO:0000247" id="M_MAM00709r" name="3(S)-hydroxy-cis-15-tetracosaenoyl-CoA" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C45H76N7O18P3S">
         <annotation>
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-            <rdf:Description rdf:about="#MAM00709r">
+            <rdf:Description rdf:about="#M_MAM00709r">
               <bqbiol:is>
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                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM163174"/>
@@ -98346,10 +98398,10 @@
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+      <species metaid="M_MAM03015r" sboTerm="SBO:0000247" id="M_MAM03015r" name="trans,cis-2,15-tetracosadienoyl-CoA" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C45H74N7O17P3S">
         <annotation>
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-            <rdf:Description rdf:about="#MAM03015r">
+            <rdf:Description rdf:about="#M_MAM03015r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM163590"/>
@@ -98360,10 +98412,10 @@
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+      <species metaid="M_MAM03364c" sboTerm="SBO:0000247" id="M_MAM03364c" name="3-Oxo-Cis-9-Octadecenoyl Coenzyme A" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C39H62N7O18P3S">
         <annotation>
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-            <rdf:Description rdf:about="#MAM03364c">
+            <rdf:Description rdf:about="#M_MAM03364c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/CE5160"/>
@@ -98375,10 +98427,10 @@
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-      <species metaid="MAM03364r" sboTerm="SBO:0000247" id="MAM03364r" name="3-Oxo-Cis-9-Octadecenoyl Coenzyme A" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C39H62N7O18P3S">
+      <species metaid="M_MAM03364r" sboTerm="SBO:0000247" id="M_MAM03364r" name="3-Oxo-Cis-9-Octadecenoyl Coenzyme A" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C39H62N7O18P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03364r">
+            <rdf:Description rdf:about="#M_MAM03364r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/CE5160"/>
@@ -98390,10 +98442,10 @@
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-      <species metaid="MAM03365c" sboTerm="SBO:0000247" id="MAM03365c" name="3(S)-Hydroxy-Cis-9-Octadecenoyl Coenzyme A" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C39H64N7O18P3S">
+      <species metaid="M_MAM03365c" sboTerm="SBO:0000247" id="M_MAM03365c" name="3(S)-Hydroxy-Cis-9-Octadecenoyl Coenzyme A" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C39H64N7O18P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03365c">
+            <rdf:Description rdf:about="#M_MAM03365c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/CE5161"/>
@@ -98405,10 +98457,10 @@
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-      <species metaid="MAM03365r" sboTerm="SBO:0000247" id="MAM03365r" name="3(S)-Hydroxy-Cis-9-Octadecenoyl Coenzyme A" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C39H64N7O18P3S">
+      <species metaid="M_MAM03365r" sboTerm="SBO:0000247" id="M_MAM03365r" name="3(S)-Hydroxy-Cis-9-Octadecenoyl Coenzyme A" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C39H64N7O18P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03365r">
+            <rdf:Description rdf:about="#M_MAM03365r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/CE5161"/>
@@ -98420,10 +98472,10 @@
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-      <species metaid="MAM03366c" sboTerm="SBO:0000247" id="MAM03366c" name="Trans,Cis-2,9-Octadecadienoyl Coenzyme A" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C39H62N7O17P3S">
+      <species metaid="M_MAM03366c" sboTerm="SBO:0000247" id="M_MAM03366c" name="Trans,Cis-2,9-Octadecadienoyl Coenzyme A" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C39H62N7O17P3S">
         <annotation>
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-            <rdf:Description rdf:about="#MAM03366c">
+            <rdf:Description rdf:about="#M_MAM03366c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/CE5162"/>
@@ -98435,10 +98487,10 @@
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-      <species metaid="MAM03366r" sboTerm="SBO:0000247" id="MAM03366r" name="Trans,Cis-2,9-Octadecadienoyl Coenzyme A" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C39H62N7O17P3S">
+      <species metaid="M_MAM03366r" sboTerm="SBO:0000247" id="M_MAM03366r" name="Trans,Cis-2,9-Octadecadienoyl Coenzyme A" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C39H62N7O17P3S">
         <annotation>
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-            <rdf:Description rdf:about="#MAM03366r">
+            <rdf:Description rdf:about="#M_MAM03366r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/CE5162"/>
@@ -98450,10 +98502,10 @@
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-      <species metaid="MAM03367m" sboTerm="SBO:0000247" id="MAM03367m" name="24(R),25(R)-Varanoyl Coenzyme A" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C48H76N7O21P3S">
+      <species metaid="M_MAM03367m" sboTerm="SBO:0000247" id="M_MAM03367m" name="24(R),25(R)-Varanoyl Coenzyme A" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C48H76N7O21P3S">
         <annotation>
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-            <rdf:Description rdf:about="#MAM03367m">
+            <rdf:Description rdf:about="#M_MAM03367m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/CE5168"/>
@@ -98463,10 +98515,10 @@
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         </annotation>
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-      <species metaid="MAM03367x" sboTerm="SBO:0000247" id="MAM03367x" name="24(R),25(R)-Varanoyl Coenzyme A" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C48H76N7O21P3S">
+      <species metaid="M_MAM03367x" sboTerm="SBO:0000247" id="M_MAM03367x" name="24(R),25(R)-Varanoyl Coenzyme A" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C48H76N7O21P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03367x">
+            <rdf:Description rdf:about="#M_MAM03367x">
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                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/CE5168"/>
@@ -98476,10 +98528,10 @@
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+      <species metaid="M_MAM03367c" sboTerm="SBO:0000247" id="M_MAM03367c" name="24(R),25(R)-Varanoyl Coenzyme A" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C48H76N7O21P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03367c">
+            <rdf:Description rdf:about="#M_MAM03367c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/CE5168"/>
@@ -98491,10 +98543,10 @@
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         </annotation>
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-      <species metaid="MAM03368c" sboTerm="SBO:0000247" id="MAM03368c" name="24-Oxo-25(R)-Trihydroxycoprostanoyl Coenzyme A" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C48H74N7O21P3S">
+      <species metaid="M_MAM03368c" sboTerm="SBO:0000247" id="M_MAM03368c" name="24-Oxo-25(R)-Trihydroxycoprostanoyl Coenzyme A" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C48H74N7O21P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03368c">
+            <rdf:Description rdf:about="#M_MAM03368c">
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                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:27379"/>
@@ -98508,10 +98560,10 @@
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-      <species metaid="MAM03368m" sboTerm="SBO:0000247" id="MAM03368m" name="24-Oxo-25(R)-Trihydroxycoprostanoyl Coenzyme A" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C48H74N7O21P3S">
+      <species metaid="M_MAM03368m" sboTerm="SBO:0000247" id="M_MAM03368m" name="24-Oxo-25(R)-Trihydroxycoprostanoyl Coenzyme A" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C48H74N7O21P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03368m">
+            <rdf:Description rdf:about="#M_MAM03368m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:27379"/>
@@ -98525,10 +98577,10 @@
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-      <species metaid="MAM03368x" sboTerm="SBO:0000247" id="MAM03368x" name="24-Oxo-25(R)-Trihydroxycoprostanoyl Coenzyme A" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C48H74N7O21P3S">
+      <species metaid="M_MAM03368x" sboTerm="SBO:0000247" id="M_MAM03368x" name="24-Oxo-25(R)-Trihydroxycoprostanoyl Coenzyme A" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C48H74N7O21P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03368x">
+            <rdf:Description rdf:about="#M_MAM03368x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:27379"/>
@@ -98542,10 +98594,10 @@
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         </annotation>
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-      <species metaid="MAM01428e" sboTerm="SBO:0000247" id="MAM01428e" name="CDP-ethanolamine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C11H19N4O11P2">
+      <species metaid="M_MAM01428e" sboTerm="SBO:0000247" id="M_MAM01428e" name="CDP-ethanolamine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C11H19N4O11P2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01428e">
+            <rdf:Description rdf:about="#M_MAM01428e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/cdpea"/>
@@ -98561,10 +98613,10 @@
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         </annotation>
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-      <species metaid="MAM00475e" sboTerm="SBO:0000247" id="MAM00475e" name="1,2-Diacyl-Sn-Glycerol (Didodecanoyl, N-C12:0)" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H52O5">
+      <species metaid="M_MAM00475e" sboTerm="SBO:0000247" id="M_MAM00475e" name="1,2-Diacyl-Sn-Glycerol (Didodecanoyl, N-C12:0)" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H52O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00475e">
+            <rdf:Description rdf:about="#M_MAM00475e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/12dgr120"/>
@@ -98577,10 +98629,10 @@
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         </annotation>
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-      <species metaid="MAM02171g" sboTerm="SBO:0000247" id="MAM02171g" name="inositol" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H12O6">
+      <species metaid="M_MAM02171g" sboTerm="SBO:0000247" id="M_MAM02171g" name="inositol" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H12O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02171g">
+            <rdf:Description rdf:about="#M_MAM02171g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/inost"/>
@@ -98597,10 +98649,10 @@
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         </annotation>
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-      <species metaid="MAM00279r" sboTerm="SBO:0000247" id="MAM00279r" name="11,12-EET" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O3">
+      <species metaid="M_MAM00279r" sboTerm="SBO:0000247" id="M_MAM00279r" name="11,12-EET" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00279r">
+            <rdf:Description rdf:about="#M_MAM00279r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/hmdb/HMDB04673"/>
@@ -98615,10 +98667,10 @@
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         </annotation>
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-      <species metaid="MAM02896g" sboTerm="SBO:0000247" id="MAM02896g" name="serine" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H7NO3">
+      <species metaid="M_MAM02896g" sboTerm="SBO:0000247" id="M_MAM02896g" name="serine" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H7NO3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02896g">
+            <rdf:Description rdf:about="#M_MAM02896g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ser__L"/>
@@ -98635,10 +98687,10 @@
           </rdf:RDF>
         </annotation>
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+      <species metaid="M_MAM02896r" sboTerm="SBO:0000247" id="M_MAM02896r" name="serine" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H7NO3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02896r">
+            <rdf:Description rdf:about="#M_MAM02896r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ser__L"/>
@@ -98655,10 +98707,10 @@
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-      <species metaid="MAM00740c" sboTerm="SBO:0000247" id="MAM00740c" name="3,5-dioxo-12(R)-hydroxy-eicosa-(8E,10E,14Z)-trienoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H60N7O20P3S">
+      <species metaid="M_MAM00740c" sboTerm="SBO:0000247" id="M_MAM00740c" name="3,5-dioxo-12(R)-hydroxy-eicosa-(8E,10E,14Z)-trienoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H60N7O20P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00740c">
+            <rdf:Description rdf:about="#M_MAM00740c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM162898"/>
@@ -98669,10 +98721,10 @@
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         </annotation>
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-      <species metaid="MAM00689c" sboTerm="SBO:0000247" id="MAM00689c" name="3(S),12(R)-dihydroxy-5-oxo-eicosa-(8E,10E,14Z)-trienoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H62N7O20P3S">
+      <species metaid="M_MAM00689c" sboTerm="SBO:0000247" id="M_MAM00689c" name="3(S),12(R)-dihydroxy-5-oxo-eicosa-(8E,10E,14Z)-trienoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H62N7O20P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00689c">
+            <rdf:Description rdf:about="#M_MAM00689c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM162895"/>
@@ -98683,10 +98735,10 @@
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         </annotation>
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-      <species metaid="MAM00690c" sboTerm="SBO:0000247" id="MAM00690c" name="3(S),12(S)-dihydroxy-5-oxo-eicosa-(8E,10E,14Z)-trienoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H62N7O20P3S">
+      <species metaid="M_MAM00690c" sboTerm="SBO:0000247" id="M_MAM00690c" name="3(S),12(S)-dihydroxy-5-oxo-eicosa-(8E,10E,14Z)-trienoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H62N7O20P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00690c">
+            <rdf:Description rdf:about="#M_MAM00690c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM162896"/>
@@ -98697,10 +98749,10 @@
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         </annotation>
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-      <species metaid="MAM00741c" sboTerm="SBO:0000247" id="MAM00741c" name="3,5-dioxo-12(S)-hydroxy-eicosa-(8E,10E,14Z)-trienoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H60N7O20P3S">
+      <species metaid="M_MAM00741c" sboTerm="SBO:0000247" id="M_MAM00741c" name="3,5-dioxo-12(S)-hydroxy-eicosa-(8E,10E,14Z)-trienoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H60N7O20P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00741c">
+            <rdf:Description rdf:about="#M_MAM00741c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM162899"/>
@@ -98711,10 +98763,10 @@
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         </annotation>
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-      <species metaid="MAM00751r" sboTerm="SBO:0000247" id="MAM00751r" name="3alpha,7alpha,12alpha-trihydroxy-5beta-cholestan-27-al" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H46O4">
+      <species metaid="M_MAM00751r" sboTerm="SBO:0000247" id="M_MAM00751r" name="3alpha,7alpha,12alpha-trihydroxy-5beta-cholestan-27-al" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H46O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00751r">
+            <rdf:Description rdf:about="#M_MAM00751r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:48940"/>
@@ -98728,10 +98780,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00766e" sboTerm="SBO:0000247" id="MAM00766e" name="3-carboxy-alpha-chromanol" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C16H21O4">
+      <species metaid="M_MAM00766e" sboTerm="SBO:0000247" id="M_MAM00766e" name="3-carboxy-alpha-chromanol" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C16H21O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00766e">
+            <rdf:Description rdf:about="#M_MAM00766e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM163170"/>
@@ -98743,10 +98795,10 @@
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+      <species metaid="M_MAM01321e" sboTerm="SBO:0000247" id="M_MAM01321e" name="alpha-CEHC-glucuronide" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C22H29O10">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01321e">
+            <rdf:Description rdf:about="#M_MAM01321e">
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                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM15963"/>
@@ -98757,10 +98809,10 @@
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-      <species metaid="MAM00766l" sboTerm="SBO:0000247" id="MAM00766l" name="3-carboxy-alpha-chromanol" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C16H21O4">
+      <species metaid="M_MAM00766l" sboTerm="SBO:0000247" id="M_MAM00766l" name="3-carboxy-alpha-chromanol" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C16H21O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00766l">
+            <rdf:Description rdf:about="#M_MAM00766l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM163170"/>
@@ -98772,10 +98824,10 @@
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-      <species metaid="MAM01321l" sboTerm="SBO:0000247" id="MAM01321l" name="alpha-CEHC-glucuronide" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C22H29O10">
+      <species metaid="M_MAM01321l" sboTerm="SBO:0000247" id="M_MAM01321l" name="alpha-CEHC-glucuronide" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C22H29O10">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01321l">
+            <rdf:Description rdf:about="#M_MAM01321l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM15963"/>
@@ -98786,10 +98838,10 @@
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-      <species metaid="MAM02796m" sboTerm="SBO:0000247" id="MAM02796m" name="prostaglandin J2" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H29O4">
+      <species metaid="M_MAM02796m" sboTerm="SBO:0000247" id="M_MAM02796m" name="prostaglandin J2" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H29O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02796m">
+            <rdf:Description rdf:about="#M_MAM02796m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:27485"/>
@@ -98805,10 +98857,10 @@
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-      <species metaid="MAM01662m" sboTerm="SBO:0000247" id="MAM01662m" name="delta-12-prostaglandin J2" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H29O4">
+      <species metaid="M_MAM01662m" sboTerm="SBO:0000247" id="M_MAM01662m" name="delta-12-prostaglandin J2" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H29O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01662m">
+            <rdf:Description rdf:about="#M_MAM01662m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM6638"/>
@@ -98820,10 +98872,10 @@
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-      <species metaid="MAM00252r" sboTerm="SBO:0000247" id="MAM00252r" name="10,11-dihydro-12-epi-LTB4" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H33O4">
+      <species metaid="M_MAM00252r" sboTerm="SBO:0000247" id="M_MAM00252r" name="10,11-dihydro-12-epi-LTB4" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H33O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00252r">
+            <rdf:Description rdf:about="#M_MAM00252r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM162617"/>
@@ -98834,10 +98886,10 @@
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-      <species metaid="MAM00846c" sboTerm="SBO:0000247" id="MAM00846c" name="3-oxo-5(S),12(R)-dihydroxy-eicosa-8-trans-6,14-cis-trienoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H62N7O20P3S">
+      <species metaid="M_MAM00846c" sboTerm="SBO:0000247" id="M_MAM00846c" name="3-oxo-5(S),12(R)-dihydroxy-eicosa-8-trans-6,14-cis-trienoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H62N7O20P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00846c">
+            <rdf:Description rdf:about="#M_MAM00846c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM91381"/>
@@ -98848,10 +98900,10 @@
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       </species>
-      <species metaid="MAM00691c" sboTerm="SBO:0000247" id="MAM00691c" name="3(S),5(S),12(R)-trihydroxy-eicosa-8-trans-6,14-cis-trienoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H64N7O20P3S">
+      <species metaid="M_MAM00691c" sboTerm="SBO:0000247" id="M_MAM00691c" name="3(S),5(S),12(R)-trihydroxy-eicosa-8-trans-6,14-cis-trienoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H64N7O20P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00691c">
+            <rdf:Description rdf:about="#M_MAM00691c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM162897"/>
@@ -98862,10 +98914,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM01123m" sboTerm="SBO:0000247" id="MAM01123m" name="5-oxo-12-HETE" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H29O4">
+      <species metaid="M_MAM01123m" sboTerm="SBO:0000247" id="M_MAM01123m" name="5-oxo-12-HETE" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H29O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01123m">
+            <rdf:Description rdf:about="#M_MAM01123m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM162741"/>
@@ -98876,10 +98928,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM01123x" sboTerm="SBO:0000247" id="MAM01123x" name="5-oxo-12-HETE" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H29O4">
+      <species metaid="M_MAM01123x" sboTerm="SBO:0000247" id="M_MAM01123x" name="5-oxo-12-HETE" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H29O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01123x">
+            <rdf:Description rdf:about="#M_MAM01123x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM162741"/>
@@ -98890,10 +98942,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01040n" sboTerm="SBO:0000247" id="MAM01040n" name="5(S)-HETE" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O3">
+      <species metaid="M_MAM01040n" sboTerm="SBO:0000247" id="M_MAM01040n" name="5(S)-HETE" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01040n">
+            <rdf:Description rdf:about="#M_MAM01040n">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:28209"/>
@@ -98909,10 +98961,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01126m" sboTerm="SBO:0000247" id="MAM01126m" name="5-oxo-ETE" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H29O3">
+      <species metaid="M_MAM01126m" sboTerm="SBO:0000247" id="M_MAM01126m" name="5-oxo-ETE" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H29O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01126m">
+            <rdf:Description rdf:about="#M_MAM01126m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/LMFA03060011"/>
@@ -98925,10 +98977,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01040x" sboTerm="SBO:0000247" id="MAM01040x" name="5(S)-HETE" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O3">
+      <species metaid="M_MAM01040x" sboTerm="SBO:0000247" id="M_MAM01040x" name="5(S)-HETE" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01040x">
+            <rdf:Description rdf:about="#M_MAM01040x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:28209"/>
@@ -98944,10 +98996,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01126x" sboTerm="SBO:0000247" id="MAM01126x" name="5-oxo-ETE" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H29O3">
+      <species metaid="M_MAM01126x" sboTerm="SBO:0000247" id="M_MAM01126x" name="5-oxo-ETE" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H29O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01126x">
+            <rdf:Description rdf:about="#M_MAM01126x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/LMFA03060011"/>
@@ -98960,10 +99012,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02364n" sboTerm="SBO:0000247" id="MAM02364n" name="leukotriene B4" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O4">
+      <species metaid="M_MAM02364n" sboTerm="SBO:0000247" id="M_MAM02364n" name="leukotriene B4" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02364n">
+            <rdf:Description rdf:about="#M_MAM02364n">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/leuktrB4"/>
@@ -98981,10 +99033,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03325c" sboTerm="SBO:0000247" id="MAM03325c" name="3-(Methylthio)Propionate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C4H7O2S">
+      <species metaid="M_MAM03325c" sboTerm="SBO:0000247" id="M_MAM03325c" name="3-(Methylthio)Propionate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C4H7O2S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03325c">
+            <rdf:Description rdf:about="#M_MAM03325c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/C08276"/>
@@ -99000,10 +99052,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03510c" sboTerm="SBO:0000247" id="MAM03510c" name="Methanethiol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="CH4S">
+      <species metaid="M_MAM03510c" sboTerm="SBO:0000247" id="M_MAM03510c" name="Methanethiol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="CH4S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03510c">
+            <rdf:Description rdf:about="#M_MAM03510c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ch4s"/>
@@ -99017,10 +99069,10 @@
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-      <species metaid="MAM03405c" sboTerm="SBO:0000247" id="MAM03405c" name="Acrylate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C3H3O2">
+      <species metaid="M_MAM03405c" sboTerm="SBO:0000247" id="M_MAM03405c" name="Acrylate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C3H3O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03405c">
+            <rdf:Description rdf:about="#M_MAM03405c">
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                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/acryl"/>
@@ -99033,10 +99085,10 @@
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+      <species metaid="M_MAM00309m" sboTerm="SBO:0000247" id="M_MAM00309m" name="12(S)-HPETE" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O4">
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-            <rdf:Description rdf:about="#MAM00309m">
+            <rdf:Description rdf:about="#M_MAM00309m">
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@@ -99054,10 +99106,10 @@
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+      <species metaid="M_MAM02096m" sboTerm="SBO:0000247" id="M_MAM02096m" name="hepoxilin A3" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O4">
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           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02096m">
+            <rdf:Description rdf:about="#M_MAM02096m">
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@@ -99072,10 +99124,10 @@
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+      <species metaid="M_MAM00309n" sboTerm="SBO:0000247" id="M_MAM00309n" name="12(S)-HPETE" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00309n">
+            <rdf:Description rdf:about="#M_MAM00309n">
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@@ -99093,10 +99145,10 @@
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+      <species metaid="M_MAM02096n" sboTerm="SBO:0000247" id="M_MAM02096n" name="hepoxilin A3" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02096n">
+            <rdf:Description rdf:about="#M_MAM02096n">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:15631"/>
@@ -99111,10 +99163,10 @@
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+      <species metaid="M_MAM02097m" sboTerm="SBO:0000247" id="M_MAM02097m" name="hepoxilin A3-c" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C30H47N3O10S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02097m">
+            <rdf:Description rdf:about="#M_MAM02097m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/LMFA03090008"/>
@@ -99126,10 +99178,10 @@
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+      <species metaid="M_MAM01234m" sboTerm="SBO:0000247" id="M_MAM01234m" name="9-deoxy-delta12-PGD2" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01234m">
+            <rdf:Description rdf:about="#M_MAM01234m">
               <bqbiol:is>
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                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM151627"/>
@@ -99140,10 +99192,10 @@
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+      <species metaid="M_MAM02859m" sboTerm="SBO:0000247" id="M_MAM02859m" name="S-(9-deoxy-delta12-PGD2)-glutathione" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C30H47N3O10S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02859m">
+            <rdf:Description rdf:about="#M_MAM02859m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM81238"/>
@@ -99155,10 +99207,10 @@
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         </annotation>
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+      <species metaid="M_MAM01234r" sboTerm="SBO:0000247" id="M_MAM01234r" name="9-deoxy-delta12-PGD2" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01234r">
+            <rdf:Description rdf:about="#M_MAM01234r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM151627"/>
@@ -99169,10 +99221,10 @@
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+      <species metaid="M_MAM02859r" sboTerm="SBO:0000247" id="M_MAM02859r" name="S-(9-deoxy-delta12-PGD2)-glutathione" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C30H47N3O10S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02859r">
+            <rdf:Description rdf:about="#M_MAM02859r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM81238"/>
@@ -99184,10 +99236,10 @@
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-      <species metaid="MAM02864m" sboTerm="SBO:0000247" id="MAM02864m" name="S-(PGJ2)-glutathione" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C30H45N3O10S">
+      <species metaid="M_MAM02864m" sboTerm="SBO:0000247" id="M_MAM02864m" name="S-(PGJ2)-glutathione" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C30H45N3O10S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02864m">
+            <rdf:Description rdf:about="#M_MAM02864m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM81250"/>
@@ -99199,10 +99251,10 @@
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         </annotation>
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-      <species metaid="MAM02864r" sboTerm="SBO:0000247" id="MAM02864r" name="S-(PGJ2)-glutathione" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C30H45N3O10S">
+      <species metaid="M_MAM02864r" sboTerm="SBO:0000247" id="M_MAM02864r" name="S-(PGJ2)-glutathione" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C30H45N3O10S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02864r">
+            <rdf:Description rdf:about="#M_MAM02864r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM81250"/>
@@ -99214,10 +99266,10 @@
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-      <species metaid="MAM02860m" sboTerm="SBO:0000247" id="MAM02860m" name="S-(9-deoxy-delta9,12-PGD2)-glutathione" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C30H45N3O10S">
+      <species metaid="M_MAM02860m" sboTerm="SBO:0000247" id="M_MAM02860m" name="S-(9-deoxy-delta9,12-PGD2)-glutathione" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C30H45N3O10S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02860m">
+            <rdf:Description rdf:about="#M_MAM02860m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM81239"/>
@@ -99229,10 +99281,10 @@
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-      <species metaid="MAM02860r" sboTerm="SBO:0000247" id="MAM02860r" name="S-(9-deoxy-delta9,12-PGD2)-glutathione" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C30H45N3O10S">
+      <species metaid="M_MAM02860r" sboTerm="SBO:0000247" id="M_MAM02860r" name="S-(9-deoxy-delta9,12-PGD2)-glutathione" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C30H45N3O10S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02860r">
+            <rdf:Description rdf:about="#M_MAM02860r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM81239"/>
@@ -99244,10 +99296,10 @@
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-      <species metaid="MAM02863m" sboTerm="SBO:0000247" id="MAM02863m" name="S-(PGA2)-glutathione" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C30H45N3O10S">
+      <species metaid="M_MAM02863m" sboTerm="SBO:0000247" id="M_MAM02863m" name="S-(PGA2)-glutathione" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C30H45N3O10S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02863m">
+            <rdf:Description rdf:about="#M_MAM02863m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM81249"/>
@@ -99259,10 +99311,10 @@
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-      <species metaid="MAM02777r" sboTerm="SBO:0000247" id="MAM02777r" name="prostaglandin A2" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H29O4">
+      <species metaid="M_MAM02777r" sboTerm="SBO:0000247" id="M_MAM02777r" name="prostaglandin A2" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H29O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02777r">
+            <rdf:Description rdf:about="#M_MAM02777r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:27820"/>
@@ -99278,10 +99330,10 @@
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-      <species metaid="MAM02863r" sboTerm="SBO:0000247" id="MAM02863r" name="S-(PGA2)-glutathione" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C30H45N3O10S">
+      <species metaid="M_MAM02863r" sboTerm="SBO:0000247" id="M_MAM02863r" name="S-(PGA2)-glutathione" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C30H45N3O10S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02863r">
+            <rdf:Description rdf:about="#M_MAM02863r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM81249"/>
@@ -99293,10 +99345,10 @@
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+      <species metaid="M_MAM02776m" sboTerm="SBO:0000247" id="M_MAM02776m" name="prostaglandin A1" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O4">
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-            <rdf:Description rdf:about="#MAM02776m">
+            <rdf:Description rdf:about="#M_MAM02776m">
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@@ -99312,10 +99364,10 @@
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+      <species metaid="M_MAM02862m" sboTerm="SBO:0000247" id="M_MAM02862m" name="S-(PGA1)-glutathione" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C30H47N3O10S">
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+            <rdf:Description rdf:about="#M_MAM02862m">
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                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C11304"/>
@@ -99328,10 +99380,10 @@
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+      <species metaid="M_MAM02776r" sboTerm="SBO:0000247" id="M_MAM02776r" name="prostaglandin A1" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O4">
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-            <rdf:Description rdf:about="#MAM02776r">
+            <rdf:Description rdf:about="#M_MAM02776r">
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@@ -99347,10 +99399,10 @@
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+      <species metaid="M_MAM02862r" sboTerm="SBO:0000247" id="M_MAM02862r" name="S-(PGA1)-glutathione" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C30H47N3O10S">
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-            <rdf:Description rdf:about="#MAM02862r">
+            <rdf:Description rdf:about="#M_MAM02862r">
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                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C11304"/>
@@ -99363,10 +99415,10 @@
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-      <species metaid="MAM00420c" sboTerm="SBO:0000247" id="MAM00420c" name="18,20-dioxo-20-CoA-LTB4" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C41H57N7O22P3S">
+      <species metaid="M_MAM00420c" sboTerm="SBO:0000247" id="M_MAM00420c" name="18,20-dioxo-20-CoA-LTB4" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C41H57N7O22P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00420c">
+            <rdf:Description rdf:about="#M_MAM00420c">
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                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM33740"/>
@@ -99378,10 +99430,10 @@
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-      <species metaid="MAM00581c" sboTerm="SBO:0000247" id="MAM00581c" name="20-CoA-20-oxo-18r-hydroxy-LTB4" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C41H59N7O22P3S">
+      <species metaid="M_MAM00581c" sboTerm="SBO:0000247" id="M_MAM00581c" name="20-CoA-20-oxo-18r-hydroxy-LTB4" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C41H59N7O22P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00581c">
+            <rdf:Description rdf:about="#M_MAM00581c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM35480"/>
@@ -99392,10 +99444,10 @@
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-      <species metaid="MAM03332c" sboTerm="SBO:0000247" id="MAM03332c" name="(8Z,11Z,14Z)-Eicosatrienoic Acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H33O2">
+      <species metaid="M_MAM03332c" sboTerm="SBO:0000247" id="M_MAM03332c" name="(8Z,11Z,14Z)-Eicosatrienoic Acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H33O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03332c">
+            <rdf:Description rdf:about="#M_MAM03332c">
               <bqbiol:is>
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                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/CE2516"/>
@@ -99411,10 +99463,10 @@
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+      <species metaid="M_MAM02785n" sboTerm="SBO:0000247" id="M_MAM02785n" name="prostaglandin E1" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H33O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02785n">
+            <rdf:Description rdf:about="#M_MAM02785n">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/prostge1"/>
@@ -99432,10 +99484,10 @@
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-      <species metaid="MAM02793n" sboTerm="SBO:0000247" id="MAM02793n" name="prostaglandin H1" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H33O5">
+      <species metaid="M_MAM02793n" sboTerm="SBO:0000247" id="M_MAM02793n" name="prostaglandin H1" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H33O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02793n">
+            <rdf:Description rdf:about="#M_MAM02793n">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM78300"/>
@@ -99447,10 +99499,10 @@
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-      <species metaid="MAM00329m" sboTerm="SBO:0000247" id="MAM00329m" name="12-oxo-20-carboxy-LTB4" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C20H26O6">
+      <species metaid="M_MAM00329m" sboTerm="SBO:0000247" id="M_MAM00329m" name="12-oxo-20-carboxy-LTB4" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C20H26O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00329m">
+            <rdf:Description rdf:about="#M_MAM00329m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM33276"/>
@@ -99462,10 +99514,10 @@
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-      <species metaid="MAM00328m" sboTerm="SBO:0000247" id="MAM00328m" name="12-oxo-10,11-dihydro-20-COOH-LTB4" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C20H28O6">
+      <species metaid="M_MAM00328m" sboTerm="SBO:0000247" id="M_MAM00328m" name="12-oxo-10,11-dihydro-20-COOH-LTB4" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C20H28O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00328m">
+            <rdf:Description rdf:about="#M_MAM00328m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM33275"/>
@@ -99477,10 +99529,10 @@
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-      <species metaid="MAM00329x" sboTerm="SBO:0000247" id="MAM00329x" name="12-oxo-20-carboxy-LTB4" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C20H26O6">
+      <species metaid="M_MAM00329x" sboTerm="SBO:0000247" id="M_MAM00329x" name="12-oxo-20-carboxy-LTB4" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C20H26O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00329x">
+            <rdf:Description rdf:about="#M_MAM00329x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM33276"/>
@@ -99492,10 +99544,10 @@
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-      <species metaid="MAM00328x" sboTerm="SBO:0000247" id="MAM00328x" name="12-oxo-10,11-dihydro-20-COOH-LTB4" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C20H28O6">
+      <species metaid="M_MAM00328x" sboTerm="SBO:0000247" id="M_MAM00328x" name="12-oxo-10,11-dihydro-20-COOH-LTB4" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C20H28O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00328x">
+            <rdf:Description rdf:about="#M_MAM00328x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM33275"/>
@@ -99507,10 +99559,10 @@
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-      <species metaid="MAM03352x" sboTerm="SBO:0000247" id="MAM03352x" name="Cis-6-Dodecenoyl Coenzyme A" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C33H52N7O17P3S">
+      <species metaid="M_MAM03352x" sboTerm="SBO:0000247" id="M_MAM03352x" name="Cis-6-Dodecenoyl Coenzyme A" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C33H52N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03352x">
+            <rdf:Description rdf:about="#M_MAM03352x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/CE4794"/>
@@ -99520,10 +99572,10 @@
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-      <species metaid="MAM00678c" sboTerm="SBO:0000247" id="MAM00678c" name="2-trans-4-cis-decadienoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C31H46N7O17P3S">
+      <species metaid="M_MAM00678c" sboTerm="SBO:0000247" id="M_MAM00678c" name="2-trans-4-cis-decadienoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C31H46N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00678c">
+            <rdf:Description rdf:about="#M_MAM00678c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM1601"/>
@@ -99535,10 +99587,10 @@
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-      <species metaid="MAM03035c" sboTerm="SBO:0000247" id="MAM03035c" name="trans-3-decenoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C31H48N7O17P3S">
+      <species metaid="M_MAM03035c" sboTerm="SBO:0000247" id="M_MAM03035c" name="trans-3-decenoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C31H48N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03035c">
+            <rdf:Description rdf:about="#M_MAM03035c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM90096"/>
@@ -99550,10 +99602,10 @@
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-      <species metaid="MAM02891r" sboTerm="SBO:0000247" id="MAM02891r" name="selenomethionine" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H11NO2Se">
+      <species metaid="M_MAM02891r" sboTerm="SBO:0000247" id="M_MAM02891r" name="selenomethionine" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H11NO2Se">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02891r">
+            <rdf:Description rdf:about="#M_MAM02891r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/selmeth"/>
@@ -99570,10 +99622,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM02892r" sboTerm="SBO:0000247" id="MAM02892r" name="selenomethionine-se-oxide" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H11NO3Se">
+      <species metaid="M_MAM02892r" sboTerm="SBO:0000247" id="M_MAM02892r" name="selenomethionine-se-oxide" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H11NO3Se">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02892r">
+            <rdf:Description rdf:about="#M_MAM02892r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C05708"/>
@@ -99587,10 +99639,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01115n" sboTerm="SBO:0000247" id="MAM01115n" name="5-methyl-THF" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H24N7O6">
+      <species metaid="M_MAM01115n" sboTerm="SBO:0000247" id="M_MAM01115n" name="5-methyl-THF" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H24N7O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01115n">
+            <rdf:Description rdf:about="#M_MAM01115n">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/5mthf"/>
@@ -99606,10 +99658,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM02980n" sboTerm="SBO:0000247" id="MAM02980n" name="THF" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C19H21N7O6">
+      <species metaid="M_MAM02980n" sboTerm="SBO:0000247" id="M_MAM02980n" name="THF" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C19H21N7O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02980n">
+            <rdf:Description rdf:about="#M_MAM02980n">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/thf"/>
@@ -99625,10 +99677,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02890n" sboTerm="SBO:0000247" id="MAM02890n" name="selenohomocysteine" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H9NO2Se">
+      <species metaid="M_MAM02890n" sboTerm="SBO:0000247" id="M_MAM02890n" name="selenohomocysteine" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H9NO2Se">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02890n">
+            <rdf:Description rdf:about="#M_MAM02890n">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/selhcys"/>
@@ -99645,10 +99697,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02891n" sboTerm="SBO:0000247" id="MAM02891n" name="selenomethionine" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H11NO2Se">
+      <species metaid="M_MAM02891n" sboTerm="SBO:0000247" id="M_MAM02891n" name="selenomethionine" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H11NO2Se">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02891n">
+            <rdf:Description rdf:about="#M_MAM02891n">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/selmeth"/>
@@ -99665,10 +99717,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01115r" sboTerm="SBO:0000247" id="MAM01115r" name="5-methyl-THF" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H24N7O6">
+      <species metaid="M_MAM01115r" sboTerm="SBO:0000247" id="M_MAM01115r" name="5-methyl-THF" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H24N7O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01115r">
+            <rdf:Description rdf:about="#M_MAM01115r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/5mthf"/>
@@ -99684,10 +99736,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02980r" sboTerm="SBO:0000247" id="MAM02980r" name="THF" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C19H21N7O6">
+      <species metaid="M_MAM02980r" sboTerm="SBO:0000247" id="M_MAM02980r" name="THF" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C19H21N7O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02980r">
+            <rdf:Description rdf:about="#M_MAM02980r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/thf"/>
@@ -99703,10 +99755,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02890r" sboTerm="SBO:0000247" id="MAM02890r" name="selenohomocysteine" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H9NO2Se">
+      <species metaid="M_MAM02890r" sboTerm="SBO:0000247" id="M_MAM02890r" name="selenohomocysteine" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H9NO2Se">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02890r">
+            <rdf:Description rdf:about="#M_MAM02890r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/selhcys"/>
@@ -99723,10 +99775,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02617r" sboTerm="SBO:0000247" id="MAM02617r" name="noradrenaline" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C8H12NO3">
+      <species metaid="M_MAM02617r" sboTerm="SBO:0000247" id="M_MAM02617r" name="noradrenaline" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C8H12NO3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02617r">
+            <rdf:Description rdf:about="#M_MAM02617r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/nrpphr"/>
@@ -99742,10 +99794,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02618r" sboTerm="SBO:0000247" id="MAM02618r" name="noradrenochrome" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H7NO3">
+      <species metaid="M_MAM02618r" sboTerm="SBO:0000247" id="M_MAM02618r" name="noradrenochrome" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H7NO3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02618r">
+            <rdf:Description rdf:about="#M_MAM02618r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM64900"/>
@@ -99758,10 +99810,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03381c" sboTerm="SBO:0000247" id="MAM03381c" name="Benzo[A]Pyrene-2,3-Oxide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H12O">
+      <species metaid="M_MAM03381c" sboTerm="SBO:0000247" id="M_MAM03381c" name="Benzo[A]Pyrene-2,3-Oxide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H12O">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03381c">
+            <rdf:Description rdf:about="#M_MAM03381c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/CN0012"/>
@@ -99774,10 +99826,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01374r" sboTerm="SBO:0000247" id="MAM01374r" name="benzo[a]pyrene" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H12">
+      <species metaid="M_MAM01374r" sboTerm="SBO:0000247" id="M_MAM01374r" name="benzo[a]pyrene" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H12">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01374r">
+            <rdf:Description rdf:about="#M_MAM01374r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:29865"/>
@@ -99791,10 +99843,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03381r" sboTerm="SBO:0000247" id="MAM03381r" name="Benzo[A]Pyrene-2,3-Oxide" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H12O">
+      <species metaid="M_MAM03381r" sboTerm="SBO:0000247" id="M_MAM03381r" name="Benzo[A]Pyrene-2,3-Oxide" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H12O">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03381r">
+            <rdf:Description rdf:about="#M_MAM03381r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/CN0012"/>
@@ -99807,10 +99859,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03378r" sboTerm="SBO:0000247" id="MAM03378r" name="Benzo[A]Pyrene-2,3-Diol" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H14O2">
+      <species metaid="M_MAM03378r" sboTerm="SBO:0000247" id="M_MAM03378r" name="Benzo[A]Pyrene-2,3-Diol" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H14O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03378r">
+            <rdf:Description rdf:about="#M_MAM03378r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/CN0009"/>
@@ -99822,10 +99874,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01375r" sboTerm="SBO:0000247" id="MAM01375r" name="benzo[a]pyrene-4,5-oxide" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H12O">
+      <species metaid="M_MAM01375r" sboTerm="SBO:0000247" id="M_MAM01375r" name="benzo[a]pyrene-4,5-oxide" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H12O">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01375r">
+            <rdf:Description rdf:about="#M_MAM01375r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C14851"/>
@@ -99839,10 +99891,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03379r" sboTerm="SBO:0000247" id="MAM03379r" name="Benzo[A]Pyrene-4,5-Diol" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H12O2">
+      <species metaid="M_MAM03379r" sboTerm="SBO:0000247" id="M_MAM03379r" name="Benzo[A]Pyrene-4,5-Diol" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H12O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03379r">
+            <rdf:Description rdf:about="#M_MAM03379r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/CN0010"/>
@@ -99855,10 +99907,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01379r" sboTerm="SBO:0000247" id="MAM01379r" name="benzo[a]pyrene-9,10-oxide" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H12O">
+      <species metaid="M_MAM01379r" sboTerm="SBO:0000247" id="M_MAM01379r" name="benzo[a]pyrene-9,10-oxide" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H12O">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01379r">
+            <rdf:Description rdf:about="#M_MAM01379r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C14849"/>
@@ -99872,10 +99924,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03380r" sboTerm="SBO:0000247" id="MAM03380r" name="Benzo[A]Pyrene-9,10-Diol" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H12O2">
+      <species metaid="M_MAM03380r" sboTerm="SBO:0000247" id="M_MAM03380r" name="Benzo[A]Pyrene-9,10-Diol" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H12O2">
         <annotation>
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+            <rdf:Description rdf:about="#M_MAM03380r">
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@@ -99888,10 +99940,10 @@
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+      <species metaid="M_MAM03386c" sboTerm="SBO:0000247" id="M_MAM03386c" name="7,12-Dimethylbenz[A]Anthracene-3,4-Oxide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H16O">
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-            <rdf:Description rdf:about="#MAM03386c">
+            <rdf:Description rdf:about="#M_MAM03386c">
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@@ -99904,10 +99956,10 @@
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-      <species metaid="MAM01174r" sboTerm="SBO:0000247" id="MAM01174r" name="7,12-dimethylbenz[a]anthracene" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H16">
+      <species metaid="M_MAM01174r" sboTerm="SBO:0000247" id="M_MAM01174r" name="7,12-dimethylbenz[a]anthracene" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H16">
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           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01174r">
+            <rdf:Description rdf:about="#M_MAM01174r">
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@@ -99920,10 +99972,10 @@
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+      <species metaid="M_MAM03386r" sboTerm="SBO:0000247" id="M_MAM03386r" name="7,12-Dimethylbenz[A]Anthracene-3,4-Oxide" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H16O">
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-            <rdf:Description rdf:about="#MAM03386r">
+            <rdf:Description rdf:about="#M_MAM03386r">
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@@ -99936,10 +99988,10 @@
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+      <species metaid="M_MAM03387c" sboTerm="SBO:0000247" id="M_MAM03387c" name="7,12-Dimethylbenz[A]Anthracene-3,4-Diol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H18O2">
         <annotation>
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-            <rdf:Description rdf:about="#MAM03387c">
+            <rdf:Description rdf:about="#M_MAM03387c">
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@@ -99952,10 +100004,10 @@
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+      <species metaid="M_MAM03387r" sboTerm="SBO:0000247" id="M_MAM03387r" name="7,12-Dimethylbenz[A]Anthracene-3,4-Diol" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H18O2">
         <annotation>
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-            <rdf:Description rdf:about="#MAM03387r">
+            <rdf:Description rdf:about="#M_MAM03387r">
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@@ -99968,10 +100020,10 @@
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+      <species metaid="M_MAM03388c" sboTerm="SBO:0000247" id="M_MAM03388c" name="7,12-Dimethylbenz[A]Anthracene-3,4-Diol-1,2-Epoxide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H18O3">
         <annotation>
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-            <rdf:Description rdf:about="#MAM03388c">
+            <rdf:Description rdf:about="#M_MAM03388c">
               <bqbiol:is>
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@@ -99984,10 +100036,10 @@
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+      <species metaid="M_MAM03388r" sboTerm="SBO:0000247" id="M_MAM03388r" name="7,12-Dimethylbenz[A]Anthracene-3,4-Diol-1,2-Epoxide" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H18O3">
         <annotation>
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-            <rdf:Description rdf:about="#MAM03388r">
+            <rdf:Description rdf:about="#M_MAM03388r">
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@@ -100000,10 +100052,10 @@
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+      <species metaid="M_MAM03382c" sboTerm="SBO:0000247" id="M_MAM03382c" name="Dibenzo[A,L]Pyrene" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C24H14">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03382c">
+            <rdf:Description rdf:about="#M_MAM03382c">
               <bqbiol:is>
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@@ -100017,10 +100069,10 @@
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+      <species metaid="M_MAM03383c" sboTerm="SBO:0000247" id="M_MAM03383c" name="Dibenzo[A,L]Pyrene-11,12-Epoxide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C24H14O">
         <annotation>
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-            <rdf:Description rdf:about="#MAM03383c">
+            <rdf:Description rdf:about="#M_MAM03383c">
               <bqbiol:is>
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                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/CN0017"/>
@@ -100033,10 +100085,10 @@
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+      <species metaid="M_MAM03382r" sboTerm="SBO:0000247" id="M_MAM03382r" name="Dibenzo[A,L]Pyrene" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C24H14">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03382r">
+            <rdf:Description rdf:about="#M_MAM03382r">
               <bqbiol:is>
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                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/CN0016"/>
@@ -100050,10 +100102,10 @@
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+      <species metaid="M_MAM03383r" sboTerm="SBO:0000247" id="M_MAM03383r" name="Dibenzo[A,L]Pyrene-11,12-Epoxide" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C24H14O">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03383r">
+            <rdf:Description rdf:about="#M_MAM03383r">
               <bqbiol:is>
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                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/CN0017"/>
@@ -100066,10 +100118,10 @@
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+      <species metaid="M_MAM03384c" sboTerm="SBO:0000247" id="M_MAM03384c" name="Dibenzo[A,L]Pyrene-11,12-Diol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C24H16O2">
         <annotation>
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-            <rdf:Description rdf:about="#MAM03384c">
+            <rdf:Description rdf:about="#M_MAM03384c">
               <bqbiol:is>
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@@ -100082,10 +100134,10 @@
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+      <species metaid="M_MAM03384r" sboTerm="SBO:0000247" id="M_MAM03384r" name="Dibenzo[A,L]Pyrene-11,12-Diol" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C24H16O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03384r">
+            <rdf:Description rdf:about="#M_MAM03384r">
               <bqbiol:is>
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                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/CN0018"/>
@@ -100098,10 +100150,10 @@
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+      <species metaid="M_MAM03385c" sboTerm="SBO:0000247" id="M_MAM03385c" name="Dibenzo[A,L]Pyrene-11,12-Diol-13,14-Epoxide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C24H14O3">
         <annotation>
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-            <rdf:Description rdf:about="#MAM03385c">
+            <rdf:Description rdf:about="#M_MAM03385c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/CN0019"/>
@@ -100113,10 +100165,10 @@
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-      <species metaid="MAM03385r" sboTerm="SBO:0000247" id="MAM03385r" name="Dibenzo[A,L]Pyrene-11,12-Diol-13,14-Epoxide" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C24H14O3">
+      <species metaid="M_MAM03385r" sboTerm="SBO:0000247" id="M_MAM03385r" name="Dibenzo[A,L]Pyrene-11,12-Diol-13,14-Epoxide" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C24H14O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03385r">
+            <rdf:Description rdf:about="#M_MAM03385r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/CN0019"/>
@@ -100128,10 +100180,10 @@
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-      <species metaid="MAM02999c" sboTerm="SBO:0000247" id="MAM02999c" name="tiglyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C26H38N7O17P3S">
+      <species metaid="M_MAM02999c" sboTerm="SBO:0000247" id="M_MAM02999c" name="tiglyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C26H38N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02999c">
+            <rdf:Description rdf:about="#M_MAM02999c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/2mb2coa"/>
@@ -100147,10 +100199,10 @@
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-      <species metaid="MAM00159c" sboTerm="SBO:0000247" id="MAM00159c" name="(R)-3-hydroxybutanoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C25H38N7O18P3S">
+      <species metaid="M_MAM00159c" sboTerm="SBO:0000247" id="M_MAM00159c" name="(R)-3-hydroxybutanoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C25H38N7O18P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00159c">
+            <rdf:Description rdf:about="#M_MAM00159c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/3hbcoa__R"/>
@@ -100165,10 +100217,10 @@
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-      <species metaid="MAM03408c" sboTerm="SBO:0000247" id="MAM03408c" name="Adipic Acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H8O4">
+      <species metaid="M_MAM03408c" sboTerm="SBO:0000247" id="M_MAM03408c" name="Adipic Acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H8O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03408c">
+            <rdf:Description rdf:about="#M_MAM03408c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/adpac"/>
@@ -100184,10 +100236,10 @@
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-      <species metaid="MAM03409c" sboTerm="SBO:0000247" id="MAM03409c" name="Adipoyl Coenzyme A" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C27H39N7O19P3S">
+      <species metaid="M_MAM03409c" sboTerm="SBO:0000247" id="M_MAM03409c" name="Adipoyl Coenzyme A" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C27H39N7O19P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03409c">
+            <rdf:Description rdf:about="#M_MAM03409c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/adpcoa"/>
@@ -100200,10 +100252,10 @@
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-      <species metaid="MAM03408x" sboTerm="SBO:0000247" id="MAM03408x" name="Adipic Acid" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H8O4">
+      <species metaid="M_MAM03408x" sboTerm="SBO:0000247" id="M_MAM03408x" name="Adipic Acid" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H8O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03408x">
+            <rdf:Description rdf:about="#M_MAM03408x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/adpac"/>
@@ -100219,10 +100271,10 @@
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-      <species metaid="MAM03409x" sboTerm="SBO:0000247" id="MAM03409x" name="Adipoyl Coenzyme A" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C27H39N7O19P3S">
+      <species metaid="M_MAM03409x" sboTerm="SBO:0000247" id="M_MAM03409x" name="Adipoyl Coenzyme A" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C27H39N7O19P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03409x">
+            <rdf:Description rdf:about="#M_MAM03409x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/adpcoa"/>
@@ -100235,10 +100287,10 @@
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         </annotation>
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-      <species metaid="MAM03499x" sboTerm="SBO:0000247" id="MAM03499x" name="Adipoyl Carnitine" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C13H22NO6">
+      <species metaid="M_MAM03499x" sboTerm="SBO:0000247" id="M_MAM03499x" name="Adipoyl Carnitine" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C13H22NO6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03499x">
+            <rdf:Description rdf:about="#M_MAM03499x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/c6dc"/>
@@ -100250,10 +100302,10 @@
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         </annotation>
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-      <species metaid="MAM03201c" sboTerm="SBO:0000247" id="MAM03201c" name="3-Hydroxy Butyryl Carnitine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C11H21NO5">
+      <species metaid="M_MAM03201c" sboTerm="SBO:0000247" id="M_MAM03201c" name="3-Hydroxy Butyryl Carnitine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C11H21NO5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03201c">
+            <rdf:Description rdf:about="#M_MAM03201c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/3bcrn"/>
@@ -100266,10 +100318,10 @@
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         </annotation>
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-      <species metaid="MAM03201e" sboTerm="SBO:0000247" id="MAM03201e" name="3-Hydroxy Butyryl Carnitine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C11H21NO5">
+      <species metaid="M_MAM03201e" sboTerm="SBO:0000247" id="M_MAM03201e" name="3-Hydroxy Butyryl Carnitine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C11H21NO5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03201e">
+            <rdf:Description rdf:about="#M_MAM03201e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/3bcrn"/>
@@ -100282,10 +100334,10 @@
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         </annotation>
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-      <species metaid="MAM03488c" sboTerm="SBO:0000247" id="MAM03488c" name="Decanoyl Carnitine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C17H33NO4">
+      <species metaid="M_MAM03488c" sboTerm="SBO:0000247" id="M_MAM03488c" name="Decanoyl Carnitine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C17H33NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03488c">
+            <rdf:Description rdf:about="#M_MAM03488c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/c10crn"/>
@@ -100299,10 +100351,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM03486c" sboTerm="SBO:0000247" id="MAM03486c" name="Decenoyl Coenzyme A" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C31H48N7O17P3S">
+      <species metaid="M_MAM03486c" sboTerm="SBO:0000247" id="M_MAM03486c" name="Decenoyl Coenzyme A" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C31H48N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03486c">
+            <rdf:Description rdf:about="#M_MAM03486c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/c101coa"/>
@@ -100313,10 +100365,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03487c" sboTerm="SBO:0000247" id="MAM03487c" name="Decenoyl Carnitine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C17H31NO4">
+      <species metaid="M_MAM03487c" sboTerm="SBO:0000247" id="M_MAM03487c" name="Decenoyl Carnitine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C17H31NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03487c">
+            <rdf:Description rdf:about="#M_MAM03487c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/c101crn"/>
@@ -100329,10 +100381,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM03487e" sboTerm="SBO:0000247" id="MAM03487e" name="Decenoyl Carnitine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C17H31NO4">
+      <species metaid="M_MAM03487e" sboTerm="SBO:0000247" id="M_MAM03487e" name="Decenoyl Carnitine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C17H31NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03487e">
+            <rdf:Description rdf:about="#M_MAM03487e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/c101crn"/>
@@ -100345,10 +100397,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM03543c" sboTerm="SBO:0000247" id="MAM03543c" name="Decadienoyl Coenzyme A" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C31H46N7O17P3S">
+      <species metaid="M_MAM03543c" sboTerm="SBO:0000247" id="M_MAM03543c" name="Decadienoyl Coenzyme A" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C31H46N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03543c">
+            <rdf:Description rdf:about="#M_MAM03543c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/decdicoa"/>
@@ -100360,10 +100412,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03544c" sboTerm="SBO:0000247" id="MAM03544c" name="Decadienoyl Carnitine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C17H29NO4">
+      <species metaid="M_MAM03544c" sboTerm="SBO:0000247" id="M_MAM03544c" name="Decadienoyl Carnitine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C17H29NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03544c">
+            <rdf:Description rdf:about="#M_MAM03544c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/decdicrn"/>
@@ -100376,10 +100428,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03488e" sboTerm="SBO:0000247" id="MAM03488e" name="Decanoyl Carnitine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C17H33NO4">
+      <species metaid="M_MAM03488e" sboTerm="SBO:0000247" id="M_MAM03488e" name="Decanoyl Carnitine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C17H33NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03488e">
+            <rdf:Description rdf:about="#M_MAM03488e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/c10crn"/>
@@ -100393,10 +100445,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03489x" sboTerm="SBO:0000247" id="MAM03489x" name="Sebacoyl Carnitine" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C17H30NO6">
+      <species metaid="M_MAM03489x" sboTerm="SBO:0000247" id="M_MAM03489x" name="Sebacoyl Carnitine" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C17H30NO6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03489x">
+            <rdf:Description rdf:about="#M_MAM03489x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/c10dc"/>
@@ -100408,10 +100460,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03489c" sboTerm="SBO:0000247" id="MAM03489c" name="Sebacoyl Carnitine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C17H30NO6">
+      <species metaid="M_MAM03489c" sboTerm="SBO:0000247" id="M_MAM03489c" name="Sebacoyl Carnitine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C17H30NO6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03489c">
+            <rdf:Description rdf:about="#M_MAM03489c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/c10dc"/>
@@ -100423,10 +100475,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03924c" sboTerm="SBO:0000247" id="MAM03924c" name="Sebacoyl Coenzyme A" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C31H47N7O19P3S">
+      <species metaid="M_MAM03924c" sboTerm="SBO:0000247" id="M_MAM03924c" name="Sebacoyl Coenzyme A" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C31H47N7O19P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03924c">
+            <rdf:Description rdf:about="#M_MAM03924c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/sebcoa"/>
@@ -100439,10 +100491,10 @@
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       </species>
-      <species metaid="MAM03489e" sboTerm="SBO:0000247" id="MAM03489e" name="Sebacoyl Carnitine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C17H30NO6">
+      <species metaid="M_MAM03489e" sboTerm="SBO:0000247" id="M_MAM03489e" name="Sebacoyl Carnitine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C17H30NO6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03489e">
+            <rdf:Description rdf:about="#M_MAM03489e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/c10dc"/>
@@ -100454,10 +100506,10 @@
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       </species>
-      <species metaid="MAM00181c" sboTerm="SBO:0000247" id="MAM00181c" name="(S)-hydroxydecanoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C31H50N7O18P3S">
+      <species metaid="M_MAM00181c" sboTerm="SBO:0000247" id="M_MAM00181c" name="(S)-hydroxydecanoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C31H50N7O18P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00181c">
+            <rdf:Description rdf:about="#M_MAM00181c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:28325"/>
@@ -100472,10 +100524,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM03204c" sboTerm="SBO:0000247" id="MAM03204c" name="3-Hydroxydecanoylcarnitine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C17H33NO5">
+      <species metaid="M_MAM03204c" sboTerm="SBO:0000247" id="M_MAM03204c" name="3-Hydroxydecanoylcarnitine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C17H33NO5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03204c">
+            <rdf:Description rdf:about="#M_MAM03204c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/3deccrn"/>
@@ -100488,10 +100540,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03540c" sboTerm="SBO:0000247" id="MAM03540c" name="Lauroyl Carnitine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H37NO4">
+      <species metaid="M_MAM03540c" sboTerm="SBO:0000247" id="M_MAM03540c" name="Lauroyl Carnitine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H37NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03540c">
+            <rdf:Description rdf:about="#M_MAM03540c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ddeccrn"/>
@@ -100504,10 +100556,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00042c" sboTerm="SBO:0000247" id="MAM00042c" name="(2E)-dodecenoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C33H52N7O17P3S">
+      <species metaid="M_MAM00042c" sboTerm="SBO:0000247" id="M_MAM00042c" name="(2E)-dodecenoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C33H52N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00042c">
+            <rdf:Description rdf:about="#M_MAM00042c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dd2coa"/>
@@ -100523,10 +100575,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03541c" sboTerm="SBO:0000247" id="MAM03541c" name="Dodecenoyl Carnitine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H35NO4">
+      <species metaid="M_MAM03541c" sboTerm="SBO:0000247" id="M_MAM03541c" name="Dodecenoyl Carnitine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H35NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03541c">
+            <rdf:Description rdf:about="#M_MAM03541c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ddece1crn"/>
@@ -100538,10 +100590,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03491x" sboTerm="SBO:0000247" id="MAM03491x" name="Dodecanedioyl Coenzyme A" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C33H51N7O19P3S">
+      <species metaid="M_MAM03491x" sboTerm="SBO:0000247" id="M_MAM03491x" name="Dodecanedioyl Coenzyme A" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C33H51N7O19P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03491x">
+            <rdf:Description rdf:about="#M_MAM03491x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/c12dccoa"/>
@@ -100553,10 +100605,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03562x" sboTerm="SBO:0000247" id="MAM03562x" name="Dodecanedioic Acid" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C12H20O4">
+      <species metaid="M_MAM03562x" sboTerm="SBO:0000247" id="M_MAM03562x" name="Dodecanedioic Acid" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C12H20O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03562x">
+            <rdf:Description rdf:about="#M_MAM03562x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dodecanac"/>
@@ -100568,10 +100620,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03491c" sboTerm="SBO:0000247" id="MAM03491c" name="Dodecanedioyl Coenzyme A" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C33H51N7O19P3S">
+      <species metaid="M_MAM03491c" sboTerm="SBO:0000247" id="M_MAM03491c" name="Dodecanedioyl Coenzyme A" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C33H51N7O19P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03491c">
+            <rdf:Description rdf:about="#M_MAM03491c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/c12dccoa"/>
@@ -100583,10 +100635,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03562c" sboTerm="SBO:0000247" id="MAM03562c" name="Dodecanedioic Acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C12H20O4">
+      <species metaid="M_MAM03562c" sboTerm="SBO:0000247" id="M_MAM03562c" name="Dodecanedioic Acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C12H20O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03562c">
+            <rdf:Description rdf:about="#M_MAM03562c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dodecanac"/>
@@ -100598,10 +100650,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03490c" sboTerm="SBO:0000247" id="MAM03490c" name="Dodecanedioyl Carnitine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C19H34NO6">
+      <species metaid="M_MAM03490c" sboTerm="SBO:0000247" id="M_MAM03490c" name="Dodecanedioyl Carnitine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C19H34NO6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03490c">
+            <rdf:Description rdf:about="#M_MAM03490c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/c12dc"/>
@@ -100612,10 +100664,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03490e" sboTerm="SBO:0000247" id="MAM03490e" name="Dodecanedioyl Carnitine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C19H34NO6">
+      <species metaid="M_MAM03490e" sboTerm="SBO:0000247" id="M_MAM03490e" name="Dodecanedioyl Carnitine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C19H34NO6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03490e">
+            <rdf:Description rdf:about="#M_MAM03490e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/c12dc"/>
@@ -100626,10 +100678,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00174c" sboTerm="SBO:0000247" id="MAM00174c" name="(S)-3-hydroxydodecanoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C33H54N7O18P3S">
+      <species metaid="M_MAM00174c" sboTerm="SBO:0000247" id="M_MAM00174c" name="(S)-3-hydroxydodecanoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C33H54N7O18P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00174c">
+            <rdf:Description rdf:about="#M_MAM00174c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:27668"/>
@@ -100644,10 +100696,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03202c" sboTerm="SBO:0000247" id="MAM03202c" name="3-Hydroxydodecanoylcarnitine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H37NO5">
+      <species metaid="M_MAM03202c" sboTerm="SBO:0000247" id="M_MAM03202c" name="3-Hydroxydodecanoylcarnitine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H37NO5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03202c">
+            <rdf:Description rdf:about="#M_MAM03202c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/3ddcrn"/>
@@ -100660,10 +100712,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03263m" sboTerm="SBO:0000247" id="MAM03263m" name="3-Hydroxy Tetradecenoyl-7 Coenzyme A" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C35H56N7O18P3S">
+      <species metaid="M_MAM03263m" sboTerm="SBO:0000247" id="M_MAM03263m" name="3-Hydroxy Tetradecenoyl-7 Coenzyme A" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C35H56N7O18P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03263m">
+            <rdf:Description rdf:about="#M_MAM03263m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/3tetd7ecoa"/>
@@ -100674,10 +100726,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03263c" sboTerm="SBO:0000247" id="MAM03263c" name="3-Hydroxy Tetradecenoyl-7 Coenzyme A" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C35H56N7O18P3S">
+      <species metaid="M_MAM03263c" sboTerm="SBO:0000247" id="M_MAM03263c" name="3-Hydroxy Tetradecenoyl-7 Coenzyme A" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C35H56N7O18P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03263c">
+            <rdf:Description rdf:about="#M_MAM03263c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/3tetd7ecoa"/>
@@ -100688,10 +100740,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03979c" sboTerm="SBO:0000247" id="MAM03979c" name="Tetradecenoyl Coenzyme A" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C35H56N7O17P3S">
+      <species metaid="M_MAM03979c" sboTerm="SBO:0000247" id="M_MAM03979c" name="Tetradecenoyl Coenzyme A" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C35H56N7O17P3S">
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-            <rdf:Description rdf:about="#MAM03979c">
+            <rdf:Description rdf:about="#M_MAM03979c">
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@@ -100703,10 +100755,10 @@
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+      <species metaid="M_MAM03980c" sboTerm="SBO:0000247" id="M_MAM03980c" name="Tetradecenoyl Carnitine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H39NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03980c">
+            <rdf:Description rdf:about="#M_MAM03980c">
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                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/tetdece1crn"/>
@@ -100719,10 +100771,10 @@
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-      <species metaid="MAM03264c" sboTerm="SBO:0000247" id="MAM03264c" name="3-Hydroxy Tetradecenoyl-7-Carnitine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H39NO5">
+      <species metaid="M_MAM03264c" sboTerm="SBO:0000247" id="M_MAM03264c" name="3-Hydroxy Tetradecenoyl-7-Carnitine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H39NO5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03264c">
+            <rdf:Description rdf:about="#M_MAM03264c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/3tetd7ecoacrn"/>
@@ -100733,10 +100785,10 @@
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+      <species metaid="M_MAM03264e" sboTerm="SBO:0000247" id="M_MAM03264e" name="3-Hydroxy Tetradecenoyl-7-Carnitine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H39NO5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03264e">
+            <rdf:Description rdf:about="#M_MAM03264e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/3tetd7ecoacrn"/>
@@ -100747,10 +100799,10 @@
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-      <species metaid="MAM03267m" sboTerm="SBO:0000247" id="MAM03267m" name="3-Hydroxy Trans5,8Tetradecadienoyl Coenzyme A" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C35H54N7O18P3S">
+      <species metaid="M_MAM03267m" sboTerm="SBO:0000247" id="M_MAM03267m" name="3-Hydroxy Trans5,8Tetradecadienoyl Coenzyme A" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C35H54N7O18P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03267m">
+            <rdf:Description rdf:about="#M_MAM03267m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/3ttetddcoa"/>
@@ -100761,10 +100813,10 @@
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-      <species metaid="MAM03267c" sboTerm="SBO:0000247" id="MAM03267c" name="3-Hydroxy Trans5,8Tetradecadienoyl Coenzyme A" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C35H54N7O18P3S">
+      <species metaid="M_MAM03267c" sboTerm="SBO:0000247" id="M_MAM03267c" name="3-Hydroxy Trans5,8Tetradecadienoyl Coenzyme A" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C35H54N7O18P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03267c">
+            <rdf:Description rdf:about="#M_MAM03267c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/3ttetddcoa"/>
@@ -100775,10 +100827,10 @@
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-      <species metaid="MAM03974c" sboTerm="SBO:0000247" id="MAM03974c" name="Tetradecadienoyl Coenzyme A" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C35H54N7O17P3S">
+      <species metaid="M_MAM03974c" sboTerm="SBO:0000247" id="M_MAM03974c" name="Tetradecadienoyl Coenzyme A" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C35H54N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03974c">
+            <rdf:Description rdf:about="#M_MAM03974c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/tetdec2coa"/>
@@ -100789,10 +100841,10 @@
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         </annotation>
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-      <species metaid="MAM03975c" sboTerm="SBO:0000247" id="MAM03975c" name="Tetradecadienoyl Carnitine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H37NO4">
+      <species metaid="M_MAM03975c" sboTerm="SBO:0000247" id="M_MAM03975c" name="Tetradecadienoyl Carnitine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H37NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03975c">
+            <rdf:Description rdf:about="#M_MAM03975c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/tetdec2crn"/>
@@ -100804,10 +100856,10 @@
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-      <species metaid="MAM03268c" sboTerm="SBO:0000247" id="MAM03268c" name="3-Hydroxy Trans5,8Tetradecadienoyl Carnitine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H37NO5">
+      <species metaid="M_MAM03268c" sboTerm="SBO:0000247" id="M_MAM03268c" name="3-Hydroxy Trans5,8Tetradecadienoyl Carnitine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H37NO5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03268c">
+            <rdf:Description rdf:about="#M_MAM03268c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/3ttetddcoacrn"/>
@@ -100818,10 +100870,10 @@
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-      <species metaid="MAM03268e" sboTerm="SBO:0000247" id="MAM03268e" name="3-Hydroxy Trans5,8Tetradecadienoyl Carnitine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H37NO5">
+      <species metaid="M_MAM03268e" sboTerm="SBO:0000247" id="M_MAM03268e" name="3-Hydroxy Trans5,8Tetradecadienoyl Carnitine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H37NO5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03268e">
+            <rdf:Description rdf:about="#M_MAM03268e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/3ttetddcoacrn"/>
@@ -100832,10 +100884,10 @@
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-      <species metaid="MAM00178c" sboTerm="SBO:0000247" id="MAM00178c" name="(S)-3-hydroxytetradecanoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C35H58N7O18P3S">
+      <species metaid="M_MAM00178c" sboTerm="SBO:0000247" id="M_MAM00178c" name="(S)-3-hydroxytetradecanoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C35H58N7O18P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00178c">
+            <rdf:Description rdf:about="#M_MAM00178c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:27466"/>
@@ -100850,10 +100902,10 @@
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-      <species metaid="MAM03262c" sboTerm="SBO:0000247" id="MAM03262c" name="3-Hydroxy-Tetradecanoyl Carnitine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H41NO5">
+      <species metaid="M_MAM03262c" sboTerm="SBO:0000247" id="M_MAM03262c" name="3-Hydroxy-Tetradecanoyl Carnitine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H41NO5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03262c">
+            <rdf:Description rdf:about="#M_MAM03262c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/3tdcrn"/>
@@ -100866,10 +100918,10 @@
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         </annotation>
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-      <species metaid="MAM03216c" sboTerm="SBO:0000247" id="MAM03216c" name="3-Hydroxyhexadecenoyl Coenzyme A" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C37H60N7O18P3S">
+      <species metaid="M_MAM03216c" sboTerm="SBO:0000247" id="M_MAM03216c" name="3-Hydroxyhexadecenoyl Coenzyme A" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C37H60N7O18P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03216c">
+            <rdf:Description rdf:about="#M_MAM03216c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/3hdeccoa"/>
@@ -100880,10 +100932,10 @@
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         </annotation>
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-      <species metaid="MAM03217c" sboTerm="SBO:0000247" id="MAM03217c" name="3-Hydroxyhexadecenoylcarnitine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H43NO5">
+      <species metaid="M_MAM03217c" sboTerm="SBO:0000247" id="M_MAM03217c" name="3-Hydroxyhexadecenoylcarnitine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H43NO5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03217c">
+            <rdf:Description rdf:about="#M_MAM03217c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/3hdececrn"/>
@@ -100895,10 +100947,10 @@
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-      <species metaid="MAM03265m" sboTerm="SBO:0000247" id="MAM03265m" name="3-Hydroxy Trans7,10-Hexadecadienoyl Coenzyme A" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C37H58N7O18P3S">
+      <species metaid="M_MAM03265m" sboTerm="SBO:0000247" id="M_MAM03265m" name="3-Hydroxy Trans7,10-Hexadecadienoyl Coenzyme A" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C37H58N7O18P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03265m">
+            <rdf:Description rdf:about="#M_MAM03265m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/3thexddcoa"/>
@@ -100909,10 +100961,10 @@
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         </annotation>
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-      <species metaid="MAM03265c" sboTerm="SBO:0000247" id="MAM03265c" name="3-Hydroxy Trans7,10-Hexadecadienoyl Coenzyme A" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C37H58N7O18P3S">
+      <species metaid="M_MAM03265c" sboTerm="SBO:0000247" id="M_MAM03265c" name="3-Hydroxy Trans7,10-Hexadecadienoyl Coenzyme A" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C37H58N7O18P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03265c">
+            <rdf:Description rdf:about="#M_MAM03265c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/3thexddcoa"/>
@@ -100923,10 +100975,10 @@
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         </annotation>
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-      <species metaid="MAM03266c" sboTerm="SBO:0000247" id="MAM03266c" name="3-Hydroxy Trans7,10-Hexadecadienoyl Carnitine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H41NO5">
+      <species metaid="M_MAM03266c" sboTerm="SBO:0000247" id="M_MAM03266c" name="3-Hydroxy Trans7,10-Hexadecadienoyl Carnitine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H41NO5">
         <annotation>
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-            <rdf:Description rdf:about="#MAM03266c">
+            <rdf:Description rdf:about="#M_MAM03266c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/3thexddcoacrn"/>
@@ -100937,10 +100989,10 @@
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-      <species metaid="MAM03266e" sboTerm="SBO:0000247" id="MAM03266e" name="3-Hydroxy Trans7,10-Hexadecadienoyl Carnitine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H41NO5">
+      <species metaid="M_MAM03266e" sboTerm="SBO:0000247" id="M_MAM03266e" name="3-Hydroxy Trans7,10-Hexadecadienoyl Carnitine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H41NO5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03266e">
+            <rdf:Description rdf:about="#M_MAM03266e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/3thexddcoacrn"/>
@@ -100951,10 +101003,10 @@
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-      <species metaid="MAM03655c" sboTerm="SBO:0000247" id="MAM03655c" name="Hexadecanedioyl Coenzyme A" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C37H59N7O19P3S">
+      <species metaid="M_MAM03655c" sboTerm="SBO:0000247" id="M_MAM03655c" name="Hexadecanedioyl Coenzyme A" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C37H59N7O19P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03655c">
+            <rdf:Description rdf:about="#M_MAM03655c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hexdicoa"/>
@@ -100966,10 +101018,10 @@
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-      <species metaid="MAM03493c" sboTerm="SBO:0000247" id="MAM03493c" name="Hexadecanedioic Acid Mono-L-Carnitine Ester" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C23H42NO6">
+      <species metaid="M_MAM03493c" sboTerm="SBO:0000247" id="M_MAM03493c" name="Hexadecanedioic Acid Mono-L-Carnitine Ester" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C23H42NO6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03493c">
+            <rdf:Description rdf:about="#M_MAM03493c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/c16dc"/>
@@ -100981,10 +101033,10 @@
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-      <species metaid="MAM03493e" sboTerm="SBO:0000247" id="MAM03493e" name="Hexadecanedioic Acid Mono-L-Carnitine Ester" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C23H42NO6">
+      <species metaid="M_MAM03493e" sboTerm="SBO:0000247" id="M_MAM03493e" name="Hexadecanedioic Acid Mono-L-Carnitine Ester" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C23H42NO6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03493e">
+            <rdf:Description rdf:about="#M_MAM03493e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/c16dc"/>
@@ -100996,10 +101048,10 @@
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-      <species metaid="MAM03218c" sboTerm="SBO:0000247" id="MAM03218c" name="3-Hydroxyhexadecanoyl Coenzyme A" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C37H62N7O18P3S">
+      <species metaid="M_MAM03218c" sboTerm="SBO:0000247" id="M_MAM03218c" name="3-Hydroxyhexadecanoyl Coenzyme A" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C37H62N7O18P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03218c">
+            <rdf:Description rdf:about="#M_MAM03218c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/3hexdcoa"/>
@@ -101012,10 +101064,10 @@
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-      <species metaid="MAM03219c" sboTerm="SBO:0000247" id="MAM03219c" name="3-Hydroxyhexadecanoylcarnitine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H45NO5">
+      <species metaid="M_MAM03219c" sboTerm="SBO:0000247" id="M_MAM03219c" name="3-Hydroxyhexadecanoylcarnitine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H45NO5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03219c">
+            <rdf:Description rdf:about="#M_MAM03219c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/3hexdcrn"/>
@@ -101029,10 +101081,10 @@
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         </annotation>
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-      <species metaid="MAM03252c" sboTerm="SBO:0000247" id="MAM03252c" name="3-Hydroxyoctadecenoyl Coenzyme A" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C39H64N7O18P3S">
+      <species metaid="M_MAM03252c" sboTerm="SBO:0000247" id="M_MAM03252c" name="3-Hydroxyoctadecenoyl Coenzyme A" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C39H64N7O18P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03252c">
+            <rdf:Description rdf:about="#M_MAM03252c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/3octdece1coa"/>
@@ -101043,10 +101095,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM03253c" sboTerm="SBO:0000247" id="MAM03253c" name="3-Hydroxy-Octadecenoyl Carnitine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H47NO5">
+      <species metaid="M_MAM03253c" sboTerm="SBO:0000247" id="M_MAM03253c" name="3-Hydroxy-Octadecenoyl Carnitine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H47NO5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03253c">
+            <rdf:Description rdf:about="#M_MAM03253c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/3octdece1crn"/>
@@ -101058,10 +101110,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03249c" sboTerm="SBO:0000247" id="MAM03249c" name="3-Hydroxyoctadecadienoyl Coenzyme A" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C39H62N7O18P3S">
+      <species metaid="M_MAM03249c" sboTerm="SBO:0000247" id="M_MAM03249c" name="3-Hydroxyoctadecadienoyl Coenzyme A" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C39H62N7O18P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03249c">
+            <rdf:Description rdf:about="#M_MAM03249c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/3ocddcoa"/>
@@ -101072,10 +101124,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03250c" sboTerm="SBO:0000247" id="MAM03250c" name="3-Hydroxyoctadecadienoylcarnitine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H45NO5">
+      <species metaid="M_MAM03250c" sboTerm="SBO:0000247" id="M_MAM03250c" name="3-Hydroxyoctadecadienoylcarnitine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H45NO5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03250c">
+            <rdf:Description rdf:about="#M_MAM03250c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/3octdec2crn"/>
@@ -101087,10 +101139,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03230c" sboTerm="SBO:0000247" id="MAM03230c" name="(S)-3-Hydroxyoctadecanoyl Coenzyme A" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C39H66N7O18P3S">
+      <species metaid="M_MAM03230c" sboTerm="SBO:0000247" id="M_MAM03230c" name="(S)-3-Hydroxyoctadecanoyl Coenzyme A" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C39H66N7O18P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03230c">
+            <rdf:Description rdf:about="#M_MAM03230c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/3hodcoa"/>
@@ -101103,10 +101155,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03251c" sboTerm="SBO:0000247" id="MAM03251c" name="3-Hydroxyoctadecanoyl Carnitine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H49NO5">
+      <species metaid="M_MAM03251c" sboTerm="SBO:0000247" id="M_MAM03251c" name="3-Hydroxyoctadecanoyl Carnitine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H49NO5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03251c">
+            <rdf:Description rdf:about="#M_MAM03251c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/3octdeccrn"/>
@@ -101118,10 +101170,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03494c" sboTerm="SBO:0000247" id="MAM03494c" name="Malonyl Carnitine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H16NO6">
+      <species metaid="M_MAM03494c" sboTerm="SBO:0000247" id="M_MAM03494c" name="Malonyl Carnitine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H16NO6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03494c">
+            <rdf:Description rdf:about="#M_MAM03494c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/c3dc"/>
@@ -101133,10 +101185,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM03494e" sboTerm="SBO:0000247" id="MAM03494e" name="Malonyl Carnitine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H16NO6">
+      <species metaid="M_MAM03494e" sboTerm="SBO:0000247" id="M_MAM03494e" name="Malonyl Carnitine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H16NO6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03494e">
+            <rdf:Description rdf:about="#M_MAM03494e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/c3dc"/>
@@ -101148,10 +101200,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02635e" sboTerm="SBO:0000247" id="MAM02635e" name="O-butanoylcarnitine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C11H21NO4">
+      <species metaid="M_MAM02635e" sboTerm="SBO:0000247" id="M_MAM02635e" name="O-butanoylcarnitine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C11H21NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02635e">
+            <rdf:Description rdf:about="#M_MAM02635e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/hmdb/HMDB02013"/>
@@ -101167,10 +101219,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03495x" sboTerm="SBO:0000247" id="MAM03495x" name="Succinyl Carnitine" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C11H18NO6">
+      <species metaid="M_MAM03495x" sboTerm="SBO:0000247" id="M_MAM03495x" name="Succinyl Carnitine" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C11H18NO6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03495x">
+            <rdf:Description rdf:about="#M_MAM03495x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/c4dc"/>
@@ -101182,10 +101234,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03495c" sboTerm="SBO:0000247" id="MAM03495c" name="Succinyl Carnitine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C11H18NO6">
+      <species metaid="M_MAM03495c" sboTerm="SBO:0000247" id="M_MAM03495c" name="Succinyl Carnitine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C11H18NO6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03495c">
+            <rdf:Description rdf:about="#M_MAM03495c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/c4dc"/>
@@ -101197,10 +101249,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03495e" sboTerm="SBO:0000247" id="MAM03495e" name="Succinyl Carnitine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C11H18NO6">
+      <species metaid="M_MAM03495e" sboTerm="SBO:0000247" id="M_MAM03495e" name="Succinyl Carnitine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C11H18NO6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03495e">
+            <rdf:Description rdf:about="#M_MAM03495e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/c4dc"/>
@@ -101212,10 +101264,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02635x" sboTerm="SBO:0000247" id="MAM02635x" name="O-butanoylcarnitine" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C11H21NO4">
+      <species metaid="M_MAM02635x" sboTerm="SBO:0000247" id="M_MAM02635x" name="O-butanoylcarnitine" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C11H21NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02635x">
+            <rdf:Description rdf:about="#M_MAM02635x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/hmdb/HMDB02013"/>
@@ -101231,10 +101283,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02189c" sboTerm="SBO:0000247" id="MAM02189c" name="isovaleryl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C26H40N7O17P3S">
+      <species metaid="M_MAM02189c" sboTerm="SBO:0000247" id="M_MAM02189c" name="isovaleryl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C26H40N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02189c">
+            <rdf:Description rdf:about="#M_MAM02189c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ivcoa"/>
@@ -101250,10 +101302,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03706c" sboTerm="SBO:0000247" id="MAM03706c" name="Isovaleryl Carnitine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C12H23NO4">
+      <species metaid="M_MAM03706c" sboTerm="SBO:0000247" id="M_MAM03706c" name="Isovaleryl Carnitine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C12H23NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03706c">
+            <rdf:Description rdf:about="#M_MAM03706c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ivcrn"/>
@@ -101267,10 +101319,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03496c" sboTerm="SBO:0000247" id="MAM03496c" name="Tiglyl Carnitine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C12H21NO4">
+      <species metaid="M_MAM03496c" sboTerm="SBO:0000247" id="M_MAM03496c" name="Tiglyl Carnitine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C12H21NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03496c">
+            <rdf:Description rdf:about="#M_MAM03496c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/c51crn"/>
@@ -101284,10 +101336,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03497c" sboTerm="SBO:0000247" id="MAM03497c" name="Glutaryl Carnitine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C12H21NO6">
+      <species metaid="M_MAM03497c" sboTerm="SBO:0000247" id="M_MAM03497c" name="Glutaryl Carnitine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C12H21NO6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03497c">
+            <rdf:Description rdf:about="#M_MAM03497c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/c5dc"/>
@@ -101300,10 +101352,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03497e" sboTerm="SBO:0000247" id="MAM03497e" name="Glutaryl Carnitine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C12H21NO6">
+      <species metaid="M_MAM03497e" sboTerm="SBO:0000247" id="M_MAM03497e" name="Glutaryl Carnitine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C12H21NO6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03497e">
+            <rdf:Description rdf:about="#M_MAM03497e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/c5dc"/>
@@ -101316,10 +101368,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03498c" sboTerm="SBO:0000247" id="MAM03498c" name="Hexanoyl Carnitine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C13H25NO4">
+      <species metaid="M_MAM03498c" sboTerm="SBO:0000247" id="M_MAM03498c" name="Hexanoyl Carnitine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C13H25NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03498c">
+            <rdf:Description rdf:about="#M_MAM03498c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/c6crn"/>
@@ -101332,10 +101384,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03498x" sboTerm="SBO:0000247" id="MAM03498x" name="Hexanoyl Carnitine" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C13H25NO4">
+      <species metaid="M_MAM03498x" sboTerm="SBO:0000247" id="M_MAM03498x" name="Hexanoyl Carnitine" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C13H25NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03498x">
+            <rdf:Description rdf:about="#M_MAM03498x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/c6crn"/>
@@ -101348,10 +101400,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03498e" sboTerm="SBO:0000247" id="MAM03498e" name="Hexanoyl Carnitine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C13H25NO4">
+      <species metaid="M_MAM03498e" sboTerm="SBO:0000247" id="M_MAM03498e" name="Hexanoyl Carnitine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C13H25NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03498e">
+            <rdf:Description rdf:about="#M_MAM03498e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/c6crn"/>
@@ -101364,10 +101416,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03499c" sboTerm="SBO:0000247" id="MAM03499c" name="Adipoyl Carnitine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C13H22NO6">
+      <species metaid="M_MAM03499c" sboTerm="SBO:0000247" id="M_MAM03499c" name="Adipoyl Carnitine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C13H22NO6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03499c">
+            <rdf:Description rdf:about="#M_MAM03499c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/c6dc"/>
@@ -101379,10 +101431,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03499e" sboTerm="SBO:0000247" id="MAM03499e" name="Adipoyl Carnitine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C13H22NO6">
+      <species metaid="M_MAM03499e" sboTerm="SBO:0000247" id="M_MAM03499e" name="Adipoyl Carnitine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C13H22NO6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03499e">
+            <rdf:Description rdf:about="#M_MAM03499e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/c6dc"/>
@@ -101394,10 +101446,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03500c" sboTerm="SBO:0000247" id="MAM03500c" name="Octenoyl Coenzyme A" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C29H44N7O17P3S">
+      <species metaid="M_MAM03500c" sboTerm="SBO:0000247" id="M_MAM03500c" name="Octenoyl Coenzyme A" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C29H44N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03500c">
+            <rdf:Description rdf:about="#M_MAM03500c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/c81coa"/>
@@ -101409,10 +101461,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03501c" sboTerm="SBO:0000247" id="MAM03501c" name="Octenoyl Carnitine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C15H27NO4">
+      <species metaid="M_MAM03501c" sboTerm="SBO:0000247" id="M_MAM03501c" name="Octenoyl Carnitine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C15H27NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03501c">
+            <rdf:Description rdf:about="#M_MAM03501c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/c81crn"/>
@@ -101425,10 +101477,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03501e" sboTerm="SBO:0000247" id="MAM03501e" name="Octenoyl Carnitine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C15H27NO4">
+      <species metaid="M_MAM03501e" sboTerm="SBO:0000247" id="M_MAM03501e" name="Octenoyl Carnitine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C15H27NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03501e">
+            <rdf:Description rdf:about="#M_MAM03501e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/c81crn"/>
@@ -101441,10 +101493,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02409e" sboTerm="SBO:0000247" id="MAM02409e" name="L-octanoylcarnitine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C15H29NO4">
+      <species metaid="M_MAM02409e" sboTerm="SBO:0000247" id="M_MAM02409e" name="L-octanoylcarnitine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C15H29NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02409e">
+            <rdf:Description rdf:about="#M_MAM02409e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:18102"/>
@@ -101462,10 +101514,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03922c" sboTerm="SBO:0000247" id="MAM03922c" name="Suberyl Coenzyme A" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C29H43N7O19P3S">
+      <species metaid="M_MAM03922c" sboTerm="SBO:0000247" id="M_MAM03922c" name="Suberyl Coenzyme A" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C29H43N7O19P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03922c">
+            <rdf:Description rdf:about="#M_MAM03922c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/sbcoa"/>
@@ -101478,10 +101530,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03502c" sboTerm="SBO:0000247" id="MAM03502c" name="Suberyl Carnitine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C15H26NO6">
+      <species metaid="M_MAM03502c" sboTerm="SBO:0000247" id="M_MAM03502c" name="Suberyl Carnitine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C15H26NO6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03502c">
+            <rdf:Description rdf:about="#M_MAM03502c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/c8dc"/>
@@ -101493,10 +101545,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03502e" sboTerm="SBO:0000247" id="MAM03502e" name="Suberyl Carnitine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C15H26NO6">
+      <species metaid="M_MAM03502e" sboTerm="SBO:0000247" id="M_MAM03502e" name="Suberyl Carnitine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C15H26NO6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03502e">
+            <rdf:Description rdf:about="#M_MAM03502e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/c8dc"/>
@@ -101508,10 +101560,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01648r" sboTerm="SBO:0000247" id="MAM01648r" name="decanoic acid" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H19O2">
+      <species metaid="M_MAM01648r" sboTerm="SBO:0000247" id="M_MAM01648r" name="decanoic acid" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H19O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01648r">
+            <rdf:Description rdf:about="#M_MAM01648r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:30813"/>
@@ -101528,10 +101580,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03202e" sboTerm="SBO:0000247" id="MAM03202e" name="3-Hydroxydodecanoylcarnitine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H37NO5">
+      <species metaid="M_MAM03202e" sboTerm="SBO:0000247" id="M_MAM03202e" name="3-Hydroxydodecanoylcarnitine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H37NO5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03202e">
+            <rdf:Description rdf:about="#M_MAM03202e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/3ddcrn"/>
@@ -101544,10 +101596,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03540e" sboTerm="SBO:0000247" id="MAM03540e" name="Lauroyl Carnitine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H37NO4">
+      <species metaid="M_MAM03540e" sboTerm="SBO:0000247" id="M_MAM03540e" name="Lauroyl Carnitine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H37NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03540e">
+            <rdf:Description rdf:about="#M_MAM03540e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ddeccrn"/>
@@ -101560,10 +101612,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03541e" sboTerm="SBO:0000247" id="MAM03541e" name="Dodecenoyl Carnitine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H35NO4">
+      <species metaid="M_MAM03541e" sboTerm="SBO:0000247" id="M_MAM03541e" name="Dodecenoyl Carnitine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H35NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03541e">
+            <rdf:Description rdf:about="#M_MAM03541e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ddece1crn"/>
@@ -101575,10 +101627,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03204e" sboTerm="SBO:0000247" id="MAM03204e" name="3-Hydroxydecanoylcarnitine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C17H33NO5">
+      <species metaid="M_MAM03204e" sboTerm="SBO:0000247" id="M_MAM03204e" name="3-Hydroxydecanoylcarnitine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C17H33NO5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03204e">
+            <rdf:Description rdf:about="#M_MAM03204e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/3deccrn"/>
@@ -101591,10 +101643,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03544e" sboTerm="SBO:0000247" id="MAM03544e" name="Decadienoyl Carnitine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C17H29NO4">
+      <species metaid="M_MAM03544e" sboTerm="SBO:0000247" id="M_MAM03544e" name="Decadienoyl Carnitine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C17H29NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03544e">
+            <rdf:Description rdf:about="#M_MAM03544e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/decdicrn"/>
@@ -101607,10 +101659,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03555c" sboTerm="SBO:0000247" id="MAM03555c" name="13-Docosenoyl Coenzyme A" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C43H72N7O17P3S">
+      <species metaid="M_MAM03555c" sboTerm="SBO:0000247" id="M_MAM03555c" name="13-Docosenoyl Coenzyme A" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C43H72N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03555c">
+            <rdf:Description rdf:about="#M_MAM03555c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/doco13ecoa"/>
@@ -101622,10 +101674,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03555x" sboTerm="SBO:0000247" id="MAM03555x" name="13-Docosenoyl Coenzyme A" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C43H72N7O17P3S">
+      <species metaid="M_MAM03555x" sboTerm="SBO:0000247" id="M_MAM03555x" name="13-Docosenoyl Coenzyme A" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C43H72N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03555x">
+            <rdf:Description rdf:about="#M_MAM03555x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/doco13ecoa"/>
@@ -101637,10 +101689,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03560r" sboTerm="SBO:0000247" id="MAM03560r" name="Docosanedioicacid" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C22H40O4">
+      <species metaid="M_MAM03560r" sboTerm="SBO:0000247" id="M_MAM03560r" name="Docosanedioicacid" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C22H40O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03560r">
+            <rdf:Description rdf:about="#M_MAM03560r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/docosdiac"/>
@@ -101653,10 +101705,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03560c" sboTerm="SBO:0000247" id="MAM03560c" name="Docosanedioicacid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C22H40O4">
+      <species metaid="M_MAM03560c" sboTerm="SBO:0000247" id="M_MAM03560c" name="Docosanedioicacid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C22H40O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03560c">
+            <rdf:Description rdf:about="#M_MAM03560c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/docosdiac"/>
@@ -101669,10 +101721,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03560e" sboTerm="SBO:0000247" id="MAM03560e" name="Docosanedioicacid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C22H40O4">
+      <species metaid="M_MAM03560e" sboTerm="SBO:0000247" id="M_MAM03560e" name="Docosanedioicacid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C22H40O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03560e">
+            <rdf:Description rdf:about="#M_MAM03560e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/docosdiac"/>
@@ -101685,10 +101737,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03217e" sboTerm="SBO:0000247" id="MAM03217e" name="3-Hydroxyhexadecenoylcarnitine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H43NO5">
+      <species metaid="M_MAM03217e" sboTerm="SBO:0000247" id="M_MAM03217e" name="3-Hydroxyhexadecenoylcarnitine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H43NO5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03217e">
+            <rdf:Description rdf:about="#M_MAM03217e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/3hdececrn"/>
@@ -101700,10 +101752,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03219e" sboTerm="SBO:0000247" id="MAM03219e" name="3-Hydroxyhexadecanoylcarnitine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H45NO5">
+      <species metaid="M_MAM03219e" sboTerm="SBO:0000247" id="M_MAM03219e" name="3-Hydroxyhexadecanoylcarnitine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H45NO5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03219e">
+            <rdf:Description rdf:about="#M_MAM03219e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/3hexdcrn"/>
@@ -101717,10 +101769,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03243e" sboTerm="SBO:0000247" id="MAM03243e" name="3-Hydroxy-Isovaleryl Carnitine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C12H23NO5">
+      <species metaid="M_MAM03243e" sboTerm="SBO:0000247" id="M_MAM03243e" name="3-Hydroxy-Isovaleryl Carnitine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C12H23NO5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03243e">
+            <rdf:Description rdf:about="#M_MAM03243e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/3ivcrn"/>
@@ -101732,10 +101784,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03250e" sboTerm="SBO:0000247" id="MAM03250e" name="3-Hydroxyoctadecadienoylcarnitine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H45NO5">
+      <species metaid="M_MAM03250e" sboTerm="SBO:0000247" id="M_MAM03250e" name="3-Hydroxyoctadecadienoylcarnitine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H45NO5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03250e">
+            <rdf:Description rdf:about="#M_MAM03250e">
               <bqbiol:is>
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                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/3octdec2crn"/>
@@ -101747,10 +101799,10 @@
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-      <species metaid="MAM03251e" sboTerm="SBO:0000247" id="MAM03251e" name="3-Hydroxyoctadecanoyl Carnitine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H49NO5">
+      <species metaid="M_MAM03251e" sboTerm="SBO:0000247" id="M_MAM03251e" name="3-Hydroxyoctadecanoyl Carnitine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H49NO5">
         <annotation>
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-            <rdf:Description rdf:about="#MAM03251e">
+            <rdf:Description rdf:about="#M_MAM03251e">
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                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/3octdeccrn"/>
@@ -101762,10 +101814,10 @@
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-      <species metaid="MAM03253e" sboTerm="SBO:0000247" id="MAM03253e" name="3-Hydroxy-Octadecenoyl Carnitine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H47NO5">
+      <species metaid="M_MAM03253e" sboTerm="SBO:0000247" id="M_MAM03253e" name="3-Hydroxy-Octadecenoyl Carnitine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H47NO5">
         <annotation>
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-            <rdf:Description rdf:about="#MAM03253e">
+            <rdf:Description rdf:about="#M_MAM03253e">
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                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/3octdece1crn"/>
@@ -101777,10 +101829,10 @@
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-      <species metaid="MAM03262e" sboTerm="SBO:0000247" id="MAM03262e" name="3-Hydroxy-Tetradecanoyl Carnitine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H41NO5">
+      <species metaid="M_MAM03262e" sboTerm="SBO:0000247" id="M_MAM03262e" name="3-Hydroxy-Tetradecanoyl Carnitine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H41NO5">
         <annotation>
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-            <rdf:Description rdf:about="#MAM03262e">
+            <rdf:Description rdf:about="#M_MAM03262e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/3tdcrn"/>
@@ -101793,10 +101845,10 @@
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-      <species metaid="MAM03496e" sboTerm="SBO:0000247" id="MAM03496e" name="Tiglyl Carnitine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C12H21NO4">
+      <species metaid="M_MAM03496e" sboTerm="SBO:0000247" id="M_MAM03496e" name="Tiglyl Carnitine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C12H21NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03496e">
+            <rdf:Description rdf:about="#M_MAM03496e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/c51crn"/>
@@ -101810,10 +101862,10 @@
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-      <species metaid="MAM03706e" sboTerm="SBO:0000247" id="MAM03706e" name="Isovaleryl Carnitine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C12H23NO4">
+      <species metaid="M_MAM03706e" sboTerm="SBO:0000247" id="M_MAM03706e" name="Isovaleryl Carnitine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C12H23NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03706e">
+            <rdf:Description rdf:about="#M_MAM03706e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ivcrn"/>
@@ -101827,10 +101879,10 @@
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-      <species metaid="MAM03975e" sboTerm="SBO:0000247" id="MAM03975e" name="Tetradecadienoyl Carnitine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H37NO4">
+      <species metaid="M_MAM03975e" sboTerm="SBO:0000247" id="M_MAM03975e" name="Tetradecadienoyl Carnitine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H37NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03975e">
+            <rdf:Description rdf:about="#M_MAM03975e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/tetdec2crn"/>
@@ -101842,10 +101894,10 @@
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-      <species metaid="MAM03980e" sboTerm="SBO:0000247" id="MAM03980e" name="Tetradecenoyl Carnitine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H39NO4">
+      <species metaid="M_MAM03980e" sboTerm="SBO:0000247" id="M_MAM03980e" name="Tetradecenoyl Carnitine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H39NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03980e">
+            <rdf:Description rdf:about="#M_MAM03980e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/tetdece1crn"/>
@@ -101858,10 +101910,10 @@
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-      <species metaid="MAM03542m" sboTerm="SBO:0000247" id="MAM03542m" name="4,7-Decadienoyl Coenzyme A" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C31H46N7O17P3S">
+      <species metaid="M_MAM03542m" sboTerm="SBO:0000247" id="M_MAM03542m" name="4,7-Decadienoyl Coenzyme A" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C31H46N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03542m">
+            <rdf:Description rdf:about="#M_MAM03542m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dec47dicoa"/>
@@ -101872,10 +101924,10 @@
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-      <species metaid="MAM03545m" sboTerm="SBO:0000247" id="MAM03545m" name="2,4,7-Decatrienoyl Coenzyme A" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C31H44N7O17P3S">
+      <species metaid="M_MAM03545m" sboTerm="SBO:0000247" id="M_MAM03545m" name="2,4,7-Decatrienoyl Coenzyme A" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C31H44N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03545m">
+            <rdf:Description rdf:about="#M_MAM03545m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dectricoa"/>
@@ -101886,10 +101938,10 @@
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         </annotation>
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-      <species metaid="MAM03542x" sboTerm="SBO:0000247" id="MAM03542x" name="4,7-Decadienoyl Coenzyme A" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C31H46N7O17P3S">
+      <species metaid="M_MAM03542x" sboTerm="SBO:0000247" id="M_MAM03542x" name="4,7-Decadienoyl Coenzyme A" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C31H46N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03542x">
+            <rdf:Description rdf:about="#M_MAM03542x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dec47dicoa"/>
@@ -101900,10 +101952,10 @@
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         </annotation>
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-      <species metaid="MAM03545x" sboTerm="SBO:0000247" id="MAM03545x" name="2,4,7-Decatrienoyl Coenzyme A" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C31H44N7O17P3S">
+      <species metaid="M_MAM03545x" sboTerm="SBO:0000247" id="M_MAM03545x" name="2,4,7-Decatrienoyl Coenzyme A" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C31H44N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03545x">
+            <rdf:Description rdf:about="#M_MAM03545x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dectricoa"/>
@@ -101914,10 +101966,10 @@
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         </annotation>
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-      <species metaid="MAM02830m" sboTerm="SBO:0000247" id="MAM02830m" name="2,7-Decadienoyl Coenzyme A" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C31H46N7O17P3S">
+      <species metaid="M_MAM02830m" sboTerm="SBO:0000247" id="M_MAM02830m" name="2,7-Decadienoyl Coenzyme A" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C31H46N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02830m">
+            <rdf:Description rdf:about="#M_MAM02830m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/2decdicoa"/>
@@ -101928,10 +101980,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM03794m" sboTerm="SBO:0000247" id="MAM03794m" name="5-Octenoyl Coenzyme A" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C29H44N7O17P3S">
+      <species metaid="M_MAM03794m" sboTerm="SBO:0000247" id="M_MAM03794m" name="5-Octenoyl Coenzyme A" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C29H44N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03794m">
+            <rdf:Description rdf:about="#M_MAM03794m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/octe5coa"/>
@@ -101942,10 +101994,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM02830x" sboTerm="SBO:0000247" id="MAM02830x" name="2,7-Decadienoyl Coenzyme A" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C31H46N7O17P3S">
+      <species metaid="M_MAM02830x" sboTerm="SBO:0000247" id="M_MAM02830x" name="2,7-Decadienoyl Coenzyme A" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C31H46N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02830x">
+            <rdf:Description rdf:about="#M_MAM02830x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/2decdicoa"/>
@@ -101956,10 +102008,10 @@
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         </annotation>
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-      <species metaid="MAM03794x" sboTerm="SBO:0000247" id="MAM03794x" name="5-Octenoyl Coenzyme A" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C29H44N7O17P3S">
+      <species metaid="M_MAM03794x" sboTerm="SBO:0000247" id="M_MAM03794x" name="5-Octenoyl Coenzyme A" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C29H44N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03794x">
+            <rdf:Description rdf:about="#M_MAM03794x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/octe5coa"/>
@@ -101970,10 +102022,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03205m" sboTerm="SBO:0000247" id="MAM03205m" name="3,7-Decadienoyl Coenzyme A" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C31H46N7O17P3S">
+      <species metaid="M_MAM03205m" sboTerm="SBO:0000247" id="M_MAM03205m" name="3,7-Decadienoyl Coenzyme A" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C31H46N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03205m">
+            <rdf:Description rdf:about="#M_MAM03205m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/3decdicoa"/>
@@ -101984,10 +102036,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03205x" sboTerm="SBO:0000247" id="MAM03205x" name="3,7-Decadienoyl Coenzyme A" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C31H46N7O17P3S">
+      <species metaid="M_MAM03205x" sboTerm="SBO:0000247" id="M_MAM03205x" name="3,7-Decadienoyl Coenzyme A" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C31H46N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03205x">
+            <rdf:Description rdf:about="#M_MAM03205x">
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                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/3decdicoa"/>
@@ -101998,10 +102050,10 @@
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-      <species metaid="MAM03924x" sboTerm="SBO:0000247" id="MAM03924x" name="Sebacoyl Coenzyme A" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C31H47N7O19P3S">
+      <species metaid="M_MAM03924x" sboTerm="SBO:0000247" id="M_MAM03924x" name="Sebacoyl Coenzyme A" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C31H47N7O19P3S">
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-            <rdf:Description rdf:about="#MAM03924x">
+            <rdf:Description rdf:about="#M_MAM03924x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/sebcoa"/>
@@ -102014,10 +102066,10 @@
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-      <species metaid="MAM03922x" sboTerm="SBO:0000247" id="MAM03922x" name="Suberyl Coenzyme A" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C29H43N7O19P3S">
+      <species metaid="M_MAM03922x" sboTerm="SBO:0000247" id="M_MAM03922x" name="Suberyl Coenzyme A" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C29H43N7O19P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03922x">
+            <rdf:Description rdf:about="#M_MAM03922x">
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                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/sbcoa"/>
@@ -102030,10 +102082,10 @@
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-      <species metaid="MAM04004x" sboTerm="SBO:0000247" id="MAM04004x" name="2,6,10-Trimethyl Undecanoyl Coenzyme A" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C35H58N7O17P3S">
+      <species metaid="M_MAM04004x" sboTerm="SBO:0000247" id="M_MAM04004x" name="2,6,10-Trimethyl Undecanoyl Coenzyme A" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C35H58N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM04004x">
+            <rdf:Description rdf:about="#M_MAM04004x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/tmuncoa"/>
@@ -102044,10 +102096,10 @@
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+      <species metaid="M_MAM03539m" sboTerm="SBO:0000247" id="M_MAM03539m" name="5-Dodecenoyl Coenzyme A" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C33H52N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03539m">
+            <rdf:Description rdf:about="#M_MAM03539m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dd5ecoa"/>
@@ -102058,10 +102110,10 @@
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-      <species metaid="MAM02698m" sboTerm="SBO:0000247" id="MAM02698m" name="2,6-Dodecadienoyl Coenzyme A" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C33H50N7O17P3S">
+      <species metaid="M_MAM02698m" sboTerm="SBO:0000247" id="M_MAM02698m" name="2,6-Dodecadienoyl Coenzyme A" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C33H50N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02698m">
+            <rdf:Description rdf:about="#M_MAM02698m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/2ddecdicoa"/>
@@ -102073,10 +102125,10 @@
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-      <species metaid="MAM03203m" sboTerm="SBO:0000247" id="MAM03203m" name="3,6-Dodecadienoyl Coenzyme A" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C33H50N7O17P3S">
+      <species metaid="M_MAM03203m" sboTerm="SBO:0000247" id="M_MAM03203m" name="3,6-Dodecadienoyl Coenzyme A" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C33H50N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03203m">
+            <rdf:Description rdf:about="#M_MAM03203m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/3ddecdicoa"/>
@@ -102088,10 +102140,10 @@
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+      <species metaid="M_MAM02698x" sboTerm="SBO:0000247" id="M_MAM02698x" name="2,6-Dodecadienoyl Coenzyme A" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C33H50N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02698x">
+            <rdf:Description rdf:about="#M_MAM02698x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/2ddecdicoa"/>
@@ -102103,10 +102155,10 @@
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-      <species metaid="MAM03203x" sboTerm="SBO:0000247" id="MAM03203x" name="3,6-Dodecadienoyl Coenzyme A" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C33H50N7O17P3S">
+      <species metaid="M_MAM03203x" sboTerm="SBO:0000247" id="M_MAM03203x" name="3,6-Dodecadienoyl Coenzyme A" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C33H50N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03203x">
+            <rdf:Description rdf:about="#M_MAM03203x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/3ddecdicoa"/>
@@ -102118,10 +102170,10 @@
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-      <species metaid="MAM03172m" sboTerm="SBO:0000247" id="MAM03172m" name="2,6,9-Dodecatrienoyl Coenzyme A" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C33H48N7O17P3S">
+      <species metaid="M_MAM03172m" sboTerm="SBO:0000247" id="M_MAM03172m" name="2,6,9-Dodecatrienoyl Coenzyme A" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C33H48N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03172m">
+            <rdf:Description rdf:about="#M_MAM03172m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/2dodtricoa"/>
@@ -102132,10 +102184,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM03172x" sboTerm="SBO:0000247" id="MAM03172x" name="2,6,9-Dodecatrienoyl Coenzyme A" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C33H48N7O17P3S">
+      <species metaid="M_MAM03172x" sboTerm="SBO:0000247" id="M_MAM03172x" name="2,6,9-Dodecatrienoyl Coenzyme A" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C33H48N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03172x">
+            <rdf:Description rdf:about="#M_MAM03172x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/2dodtricoa"/>
@@ -102146,10 +102198,10 @@
           </rdf:RDF>
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-      <species metaid="MAM03211m" sboTerm="SBO:0000247" id="MAM03211m" name="3,6,9-Dodecatrienoyl Coenzyme A" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C33H48N7O17P3S">
+      <species metaid="M_MAM03211m" sboTerm="SBO:0000247" id="M_MAM03211m" name="3,6,9-Dodecatrienoyl Coenzyme A" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C33H48N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03211m">
+            <rdf:Description rdf:about="#M_MAM03211m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/3dodtricoa"/>
@@ -102160,10 +102212,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03211x" sboTerm="SBO:0000247" id="MAM03211x" name="3,6,9-Dodecatrienoyl Coenzyme A" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C33H48N7O17P3S">
+      <species metaid="M_MAM03211x" sboTerm="SBO:0000247" id="M_MAM03211x" name="3,6,9-Dodecatrienoyl Coenzyme A" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C33H48N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03211x">
+            <rdf:Description rdf:about="#M_MAM03211x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/3dodtricoa"/>
@@ -102174,10 +102226,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03490x" sboTerm="SBO:0000247" id="MAM03490x" name="Dodecanedioyl Carnitine" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C19H34NO6">
+      <species metaid="M_MAM03490x" sboTerm="SBO:0000247" id="M_MAM03490x" name="Dodecanedioyl Carnitine" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C19H34NO6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03490x">
+            <rdf:Description rdf:about="#M_MAM03490x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/c12dc"/>
@@ -102188,10 +102240,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM03972m" sboTerm="SBO:0000247" id="MAM03972m" name="7-Tetradecenoyl Coenzyme A" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C35H56N7O17P3S">
+      <species metaid="M_MAM03972m" sboTerm="SBO:0000247" id="M_MAM03972m" name="7-Tetradecenoyl Coenzyme A" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C35H56N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03972m">
+            <rdf:Description rdf:about="#M_MAM03972m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/tetd7ecoa"/>
@@ -102202,10 +102254,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM03978m" sboTerm="SBO:0000247" id="MAM03978m" name="5,8-Tetradecadienoyl Coenzyme A" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C35H54N7O17P3S">
+      <species metaid="M_MAM03978m" sboTerm="SBO:0000247" id="M_MAM03978m" name="5,8-Tetradecadienoyl Coenzyme A" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C35H54N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03978m">
+            <rdf:Description rdf:about="#M_MAM03978m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/tetdecdicoa"/>
@@ -102217,10 +102269,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03978x" sboTerm="SBO:0000247" id="MAM03978x" name="5,8-Tetradecadienoyl Coenzyme A" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C35H54N7O17P3S">
+      <species metaid="M_MAM03978x" sboTerm="SBO:0000247" id="M_MAM03978x" name="5,8-Tetradecadienoyl Coenzyme A" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C35H54N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03978x">
+            <rdf:Description rdf:about="#M_MAM03978x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/tetdecdicoa"/>
@@ -102232,10 +102284,10 @@
           </rdf:RDF>
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+      <species metaid="M_MAM04041m" sboTerm="SBO:0000247" id="M_MAM04041m" name="Trans5,8Tetradecadienoyl Coenzyme A" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C35H54N7O17P3S">
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-            <rdf:Description rdf:about="#MAM04041m">
+            <rdf:Description rdf:about="#M_MAM04041m">
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@@ -102247,10 +102299,10 @@
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+      <species metaid="M_MAM03288m" sboTerm="SBO:0000247" id="M_MAM03288m" name="5,8,11-Tetradecatrienoyl Coenzyme A" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C35H52N7O17P3S">
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-            <rdf:Description rdf:about="#MAM03288m">
+            <rdf:Description rdf:about="#M_MAM03288m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/5tedtricoa"/>
@@ -102261,10 +102313,10 @@
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+      <species metaid="M_MAM03288x" sboTerm="SBO:0000247" id="M_MAM03288x" name="5,8,11-Tetradecatrienoyl Coenzyme A" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C35H52N7O17P3S">
         <annotation>
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-            <rdf:Description rdf:about="#MAM03288x">
+            <rdf:Description rdf:about="#M_MAM03288x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/5tedtricoa"/>
@@ -102275,10 +102327,10 @@
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-      <species metaid="MAM03492x" sboTerm="SBO:0000247" id="MAM03492x" name="Tetradecanedioyl Coenzyme A" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C35H55N7O19P3S">
+      <species metaid="M_MAM03492x" sboTerm="SBO:0000247" id="M_MAM03492x" name="Tetradecanedioyl Coenzyme A" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C35H55N7O19P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03492x">
+            <rdf:Description rdf:about="#M_MAM03492x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/c14dccoa"/>
@@ -102289,10 +102341,10 @@
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-      <species metaid="MAM03216m" sboTerm="SBO:0000247" id="MAM03216m" name="3-Hydroxyhexadecenoyl Coenzyme A" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C37H60N7O18P3S">
+      <species metaid="M_MAM03216m" sboTerm="SBO:0000247" id="M_MAM03216m" name="3-Hydroxyhexadecenoyl Coenzyme A" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C37H60N7O18P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03216m">
+            <rdf:Description rdf:about="#M_MAM03216m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/3hdeccoa"/>
@@ -102303,10 +102355,10 @@
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-      <species metaid="MAM03650m" sboTerm="SBO:0000247" id="MAM03650m" name="7,10-Hexadecadienoyl Coenzyme A" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C37H58N7O17P3S">
+      <species metaid="M_MAM03650m" sboTerm="SBO:0000247" id="M_MAM03650m" name="7,10-Hexadecadienoyl Coenzyme A" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C37H58N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03650m">
+            <rdf:Description rdf:about="#M_MAM03650m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hexddcoa"/>
@@ -102317,10 +102369,10 @@
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-      <species metaid="MAM03982m" sboTerm="SBO:0000247" id="MAM03982m" name="Trans7,10-Hexadecadienoyl Coenzyme A" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C37H58N7O17P3S">
+      <species metaid="M_MAM03982m" sboTerm="SBO:0000247" id="M_MAM03982m" name="Trans7,10-Hexadecadienoyl Coenzyme A" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C37H58N7O17P3S">
         <annotation>
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-            <rdf:Description rdf:about="#MAM03982m">
+            <rdf:Description rdf:about="#M_MAM03982m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/thexddcoa"/>
@@ -102331,10 +102383,10 @@
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+      <species metaid="M_MAM03182x" sboTerm="SBO:0000247" id="M_MAM03182x" name="2,7,10-Hexadecatrienoyl Coenzyme A" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C37H56N7O17P3S">
         <annotation>
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-            <rdf:Description rdf:about="#MAM03182x">
+            <rdf:Description rdf:about="#M_MAM03182x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/2hexdtricoa"/>
@@ -102345,10 +102397,10 @@
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-      <species metaid="MAM03658m" sboTerm="SBO:0000247" id="MAM03658m" name="7,10,13-Hexadecatrienoyl Coenzyme A" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C37H56N7O17P3S">
+      <species metaid="M_MAM03658m" sboTerm="SBO:0000247" id="M_MAM03658m" name="7,10,13-Hexadecatrienoyl Coenzyme A" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C37H56N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03658m">
+            <rdf:Description rdf:about="#M_MAM03658m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hexdtrcoa"/>
@@ -102359,10 +102411,10 @@
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-      <species metaid="MAM03274m" sboTerm="SBO:0000247" id="MAM03274m" name="4,7,10-Hexadecatrienoyl Coenzyme A" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C37H56N7O17P3S">
+      <species metaid="M_MAM03274m" sboTerm="SBO:0000247" id="M_MAM03274m" name="4,7,10-Hexadecatrienoyl Coenzyme A" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C37H56N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03274m">
+            <rdf:Description rdf:about="#M_MAM03274m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/4hexdtricoa"/>
@@ -102373,10 +102425,10 @@
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-      <species metaid="MAM03653m" sboTerm="SBO:0000247" id="MAM03653m" name="2,4,7,10-Hexadecatetraenoyl Coenzyme A" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C37H54N7O17P3S">
+      <species metaid="M_MAM03653m" sboTerm="SBO:0000247" id="M_MAM03653m" name="2,4,7,10-Hexadecatetraenoyl Coenzyme A" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C37H54N7O17P3S">
         <annotation>
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-            <rdf:Description rdf:about="#MAM03653m">
+            <rdf:Description rdf:about="#M_MAM03653m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hexdectecoa"/>
@@ -102387,10 +102439,10 @@
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-      <species metaid="MAM03274x" sboTerm="SBO:0000247" id="MAM03274x" name="4,7,10-Hexadecatrienoyl Coenzyme A" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C37H56N7O17P3S">
+      <species metaid="M_MAM03274x" sboTerm="SBO:0000247" id="M_MAM03274x" name="4,7,10-Hexadecatrienoyl Coenzyme A" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C37H56N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03274x">
+            <rdf:Description rdf:about="#M_MAM03274x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/4hexdtricoa"/>
@@ -102401,10 +102453,10 @@
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-      <species metaid="MAM03653x" sboTerm="SBO:0000247" id="MAM03653x" name="2,4,7,10-Hexadecatetraenoyl Coenzyme A" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C37H54N7O17P3S">
+      <species metaid="M_MAM03653x" sboTerm="SBO:0000247" id="M_MAM03653x" name="2,4,7,10-Hexadecatetraenoyl Coenzyme A" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C37H54N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03653x">
+            <rdf:Description rdf:about="#M_MAM03653x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hexdectecoa"/>
@@ -102415,10 +102467,10 @@
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+      <species metaid="M_MAM03182m" sboTerm="SBO:0000247" id="M_MAM03182m" name="2,7,10-Hexadecatrienoyl Coenzyme A" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C37H56N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03182m">
+            <rdf:Description rdf:about="#M_MAM03182m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/2hexdtricoa"/>
@@ -102429,10 +102481,10 @@
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-      <species metaid="MAM03221m" sboTerm="SBO:0000247" id="MAM03221m" name="3,7,10-Hexadecatrienoyl Coenzyme A" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C37H56N7O17P3S">
+      <species metaid="M_MAM03221m" sboTerm="SBO:0000247" id="M_MAM03221m" name="3,7,10-Hexadecatrienoyl Coenzyme A" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C37H56N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03221m">
+            <rdf:Description rdf:about="#M_MAM03221m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/3hexdtricoa"/>
@@ -102443,10 +102495,10 @@
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         </annotation>
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-      <species metaid="MAM03221x" sboTerm="SBO:0000247" id="MAM03221x" name="3,7,10-Hexadecatrienoyl Coenzyme A" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C37H56N7O17P3S">
+      <species metaid="M_MAM03221x" sboTerm="SBO:0000247" id="M_MAM03221x" name="3,7,10-Hexadecatrienoyl Coenzyme A" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C37H56N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03221x">
+            <rdf:Description rdf:about="#M_MAM03221x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/3hexdtricoa"/>
@@ -102457,10 +102509,10 @@
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         </annotation>
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-      <species metaid="MAM03181m" sboTerm="SBO:0000247" id="MAM03181m" name="2,7,10,13-Hexadecatetraenoyl Coenzyme A" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C37H54N7O17P3S">
+      <species metaid="M_MAM03181m" sboTerm="SBO:0000247" id="M_MAM03181m" name="2,7,10,13-Hexadecatetraenoyl Coenzyme A" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C37H54N7O17P3S">
         <annotation>
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+            <rdf:Description rdf:about="#M_MAM03181m">
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@@ -102471,10 +102523,10 @@
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+      <species metaid="M_MAM03181x" sboTerm="SBO:0000247" id="M_MAM03181x" name="2,7,10,13-Hexadecatetraenoyl Coenzyme A" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C37H54N7O17P3S">
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+            <rdf:Description rdf:about="#M_MAM03181x">
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@@ -102485,10 +102537,10 @@
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+      <species metaid="M_MAM03273m" sboTerm="SBO:0000247" id="M_MAM03273m" name="4,7,10,13-Hexadecatetraenoyl Coenzyme A" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C37H54N7O17P3S">
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-            <rdf:Description rdf:about="#MAM03273m">
+            <rdf:Description rdf:about="#M_MAM03273m">
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@@ -102499,10 +102551,10 @@
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+      <species metaid="M_MAM03656m" sboTerm="SBO:0000247" id="M_MAM03656m" name="2,4,7,10,13-Hexadecapentaenoyl Coenzyme A" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C37H52N7O17P3S">
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-            <rdf:Description rdf:about="#MAM03656m">
+            <rdf:Description rdf:about="#M_MAM03656m">
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                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hexdpencoa"/>
@@ -102513,10 +102565,10 @@
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+      <species metaid="M_MAM03273x" sboTerm="SBO:0000247" id="M_MAM03273x" name="4,7,10,13-Hexadecatetraenoyl Coenzyme A" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C37H54N7O17P3S">
         <annotation>
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-            <rdf:Description rdf:about="#MAM03273x">
+            <rdf:Description rdf:about="#M_MAM03273x">
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                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/4hexdtetcoa"/>
@@ -102527,10 +102579,10 @@
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+      <species metaid="M_MAM03656x" sboTerm="SBO:0000247" id="M_MAM03656x" name="2,4,7,10,13-Hexadecapentaenoyl Coenzyme A" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C37H52N7O17P3S">
         <annotation>
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-            <rdf:Description rdf:about="#MAM03656x">
+            <rdf:Description rdf:about="#M_MAM03656x">
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                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hexdpencoa"/>
@@ -102541,10 +102593,10 @@
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+      <species metaid="M_MAM03220m" sboTerm="SBO:0000247" id="M_MAM03220m" name="3,7,10,13-Hexadecatetraenoyl Coenzyme A" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C37H54N7O17P3S">
         <annotation>
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-            <rdf:Description rdf:about="#MAM03220m">
+            <rdf:Description rdf:about="#M_MAM03220m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/3hexdtetcoa"/>
@@ -102555,10 +102607,10 @@
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+      <species metaid="M_MAM03220x" sboTerm="SBO:0000247" id="M_MAM03220x" name="3,7,10,13-Hexadecatetraenoyl Coenzyme A" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C37H54N7O17P3S">
         <annotation>
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-            <rdf:Description rdf:about="#MAM03220x">
+            <rdf:Description rdf:about="#M_MAM03220x">
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                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/3hexdtetcoa"/>
@@ -102569,10 +102621,10 @@
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+      <species metaid="M_MAM03218m" sboTerm="SBO:0000247" id="M_MAM03218m" name="3-Hydroxyhexadecanoyl Coenzyme A" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C37H62N7O18P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03218m">
+            <rdf:Description rdf:about="#M_MAM03218m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/3hexdcoa"/>
@@ -102585,10 +102637,10 @@
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-      <species metaid="MAM03655x" sboTerm="SBO:0000247" id="MAM03655x" name="Hexadecanedioyl Coenzyme A" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C37H59N7O19P3S">
+      <species metaid="M_MAM03655x" sboTerm="SBO:0000247" id="M_MAM03655x" name="Hexadecanedioyl Coenzyme A" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C37H59N7O19P3S">
         <annotation>
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-            <rdf:Description rdf:about="#MAM03655x">
+            <rdf:Description rdf:about="#M_MAM03655x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hexdicoa"/>
@@ -102600,10 +102652,10 @@
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         </annotation>
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-      <species metaid="MAM03655r" sboTerm="SBO:0000247" id="MAM03655r" name="Hexadecanedioyl Coenzyme A" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C37H59N7O19P3S">
+      <species metaid="M_MAM03655r" sboTerm="SBO:0000247" id="M_MAM03655r" name="Hexadecanedioyl Coenzyme A" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C37H59N7O19P3S">
         <annotation>
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-            <rdf:Description rdf:about="#MAM03655r">
+            <rdf:Description rdf:about="#M_MAM03655r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hexdicoa"/>
@@ -102615,10 +102667,10 @@
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-      <species metaid="MAM03654r" sboTerm="SBO:0000247" id="MAM03654r" name="Hexadecanediocacid" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C16H28O4">
+      <species metaid="M_MAM03654r" sboTerm="SBO:0000247" id="M_MAM03654r" name="Hexadecanediocacid" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C16H28O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03654r">
+            <rdf:Description rdf:about="#M_MAM03654r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hexdiac"/>
@@ -102631,10 +102683,10 @@
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+      <species metaid="M_MAM00403r" sboTerm="SBO:0000247" id="M_MAM00403r" name="16-hydroxyhexadecanoic acid" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C16H31O3">
         <annotation>
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-            <rdf:Description rdf:about="#MAM00403r">
+            <rdf:Description rdf:about="#M_MAM00403r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/whhdca"/>
@@ -102650,10 +102702,10 @@
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+      <species metaid="M_MAM03789x" sboTerm="SBO:0000247" id="M_MAM03789x" name="9-Octadecenoyl Coenzyme A" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C39H64N7O17P3S">
         <annotation>
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-            <rdf:Description rdf:about="#MAM03789x">
+            <rdf:Description rdf:about="#M_MAM03789x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ocde9ecoa"/>
@@ -102665,10 +102717,10 @@
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+      <species metaid="M_MAM03252m" sboTerm="SBO:0000247" id="M_MAM03252m" name="3-Hydroxyoctadecenoyl Coenzyme A" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C39H64N7O18P3S">
         <annotation>
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-            <rdf:Description rdf:about="#MAM03252m">
+            <rdf:Description rdf:about="#M_MAM03252m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/3octdece1coa"/>
@@ -102679,10 +102731,10 @@
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-      <species metaid="MAM03792m" sboTerm="SBO:0000247" id="MAM03792m" name="Octadecenoyl Coenzyme A" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C39H64N7O17P3S">
+      <species metaid="M_MAM03792m" sboTerm="SBO:0000247" id="M_MAM03792m" name="Octadecenoyl Coenzyme A" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C39H64N7O17P3S">
         <annotation>
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-            <rdf:Description rdf:about="#MAM03792m">
+            <rdf:Description rdf:about="#M_MAM03792m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/octdececoa"/>
@@ -102693,10 +102745,10 @@
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+      <species metaid="M_MAM03249m" sboTerm="SBO:0000247" id="M_MAM03249m" name="3-Hydroxyoctadecadienoyl Coenzyme A" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C39H62N7O18P3S">
         <annotation>
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-            <rdf:Description rdf:about="#MAM03249m">
+            <rdf:Description rdf:about="#M_MAM03249m">
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@@ -102707,10 +102759,10 @@
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+      <species metaid="M_MAM03194m" sboTerm="SBO:0000247" id="M_MAM03194m" name="2,6,9,12-Octadecatetraenoyl Coenzyme A" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C39H58N7O17P3S">
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@@ -102721,10 +102773,10 @@
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+      <species metaid="M_MAM03194x" sboTerm="SBO:0000247" id="M_MAM03194x" name="2,6,9,12-Octadecatetraenoyl Coenzyme A" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C39H58N7O17P3S">
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+            <rdf:Description rdf:about="#M_MAM03194x">
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@@ -102735,10 +102787,10 @@
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+            <rdf:Description rdf:about="#M_MAM03254m">
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@@ -102749,10 +102801,10 @@
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+      <species metaid="M_MAM03254x" sboTerm="SBO:0000247" id="M_MAM03254x" name="3,6,9,12-Octadecatetraenoyl Coenzyme A" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C39H58N7O17P3S">
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+            <rdf:Description rdf:about="#M_MAM03254x">
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@@ -102763,10 +102815,10 @@
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+      <species metaid="M_MAM03195m" sboTerm="SBO:0000247" id="M_MAM03195m" name="2,6,9,12,15-Octadecapentenoyl Coenzyme A" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C39H56N7O17P3S">
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+            <rdf:Description rdf:about="#M_MAM03195m">
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@@ -102777,10 +102829,10 @@
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+      <species metaid="M_MAM03255m" sboTerm="SBO:0000247" id="M_MAM03255m" name="3,6,9,12,15-Octadecapentenoyl Coenzyme A" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C39H56N7O17P3S">
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+            <rdf:Description rdf:about="#M_MAM03255m">
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@@ -102791,10 +102843,10 @@
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+      <species metaid="M_MAM03230m" sboTerm="SBO:0000247" id="M_MAM03230m" name="(S)-3-Hydroxyoctadecanoyl Coenzyme A" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C39H66N7O18P3S">
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+            <rdf:Description rdf:about="#M_MAM03230m">
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@@ -102807,10 +102859,10 @@
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+      <species metaid="M_MAM03567x" sboTerm="SBO:0000247" id="M_MAM03567x" name="11-Eicosenoyl Coenzyme A" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H68N7O17P3S">
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-            <rdf:Description rdf:about="#MAM03567x">
+            <rdf:Description rdf:about="#M_MAM03567x">
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@@ -102822,10 +102874,10 @@
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+      <species metaid="M_MAM03571m" sboTerm="SBO:0000247" id="M_MAM03571m" name="5,8,11,14-Eicosatetraenoyl Coenzyme A" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H62N7O17P3S">
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+            <rdf:Description rdf:about="#M_MAM03571m">
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@@ -102836,10 +102888,10 @@
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+      <species metaid="M_MAM03571x" sboTerm="SBO:0000247" id="M_MAM03571x" name="5,8,11,14-Eicosatetraenoyl Coenzyme A" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H62N7O17P3S">
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+            <rdf:Description rdf:about="#M_MAM03571x">
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@@ -102850,10 +102902,10 @@
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+      <species metaid="M_MAM03570x" sboTerm="SBO:0000247" id="M_MAM03570x" name="2,5,8,11,14-Eicosapentaenoyl Coenzyme A" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H60N7O17P3S">
         <annotation>
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-            <rdf:Description rdf:about="#MAM03570x">
+            <rdf:Description rdf:about="#M_MAM03570x">
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@@ -102864,10 +102916,10 @@
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+      <species metaid="M_MAM03284m" sboTerm="SBO:0000247" id="M_MAM03284m" name="5,8,11,14,17-Eicosapentenoyl Coenzyme A" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H60N7O17P3S">
         <annotation>
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-            <rdf:Description rdf:about="#MAM03284m">
+            <rdf:Description rdf:about="#M_MAM03284m">
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@@ -102878,10 +102930,10 @@
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+      <species metaid="M_MAM03171m" sboTerm="SBO:0000247" id="M_MAM03171m" name="2,7,10,13,16-Docosapentenoyl Coenzyme A" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C43H64N7O17P3S">
         <annotation>
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+            <rdf:Description rdf:about="#M_MAM03171m">
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@@ -102892,10 +102944,10 @@
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+      <species metaid="M_MAM03171x" sboTerm="SBO:0000247" id="M_MAM03171x" name="2,7,10,13,16-Docosapentenoyl Coenzyme A" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C43H64N7O17P3S">
         <annotation>
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+            <rdf:Description rdf:about="#M_MAM03171x">
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@@ -102906,10 +102958,10 @@
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+      <species metaid="M_MAM03557m" sboTerm="SBO:0000247" id="M_MAM03557m" name="2,4,7,10,13,16-Docosahexenoyl Coenzyme A" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C43H62N7O17P3S">
         <annotation>
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+            <rdf:Description rdf:about="#M_MAM03557m">
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@@ -102920,10 +102972,10 @@
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+      <species metaid="M_MAM03557x" sboTerm="SBO:0000247" id="M_MAM03557x" name="2,4,7,10,13,16-Docosahexenoyl Coenzyme A" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C43H62N7O17P3S">
         <annotation>
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+            <rdf:Description rdf:about="#M_MAM03557x">
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@@ -102934,10 +102986,10 @@
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+      <species metaid="M_MAM03210m" sboTerm="SBO:0000247" id="M_MAM03210m" name="3,7,10,13,16-Docosapentenoyl Coenzyme A" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C43H64N7O17P3S">
         <annotation>
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-            <rdf:Description rdf:about="#MAM03210m">
+            <rdf:Description rdf:about="#M_MAM03210m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/3docopencoa"/>
@@ -102948,10 +103000,10 @@
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+      <species metaid="M_MAM03210x" sboTerm="SBO:0000247" id="M_MAM03210x" name="3,7,10,13,16-Docosapentenoyl Coenzyme A" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C43H64N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03210x">
+            <rdf:Description rdf:about="#M_MAM03210x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/3docopencoa"/>
@@ -102962,10 +103014,10 @@
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         </annotation>
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-      <species metaid="MAM02831m" sboTerm="SBO:0000247" id="MAM02831m" name="2,7,10,13,16,19-Docosahexenoyl Coenzyme A" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C43H62N7O17P3S">
+      <species metaid="M_MAM02831m" sboTerm="SBO:0000247" id="M_MAM02831m" name="2,7,10,13,16,19-Docosahexenoyl Coenzyme A" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C43H62N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02831m">
+            <rdf:Description rdf:about="#M_MAM02831m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/2docohexecoa"/>
@@ -102976,10 +103028,10 @@
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-      <species metaid="MAM03556m" sboTerm="SBO:0000247" id="MAM03556m" name="2,4,7,10,13,16,19-Docosaheptenoyl Coenzyme A" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C43H60N7O17P3S">
+      <species metaid="M_MAM03556m" sboTerm="SBO:0000247" id="M_MAM03556m" name="2,4,7,10,13,16,19-Docosaheptenoyl Coenzyme A" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C43H60N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03556m">
+            <rdf:Description rdf:about="#M_MAM03556m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/docohepcoa"/>
@@ -102990,10 +103042,10 @@
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-      <species metaid="MAM03559m" sboTerm="SBO:0000247" id="MAM03559m" name="3,7,10,13,16,19-Docosahexenoyl Coenzyme A" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C43H62N7O17P3S">
+      <species metaid="M_MAM03559m" sboTerm="SBO:0000247" id="M_MAM03559m" name="3,7,10,13,16,19-Docosahexenoyl Coenzyme A" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C43H62N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03559m">
+            <rdf:Description rdf:about="#M_MAM03559m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/docosahexcoa"/>
@@ -103004,10 +103056,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM03798r" sboTerm="SBO:0000247" id="MAM03798r" name="W-Hydroxydocosanoicacid" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C22H42O3">
+      <species metaid="M_MAM03798r" sboTerm="SBO:0000247" id="M_MAM03798r" name="W-Hydroxydocosanoicacid" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C22H42O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03798r">
+            <rdf:Description rdf:about="#M_MAM03798r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/omhdocosac"/>
@@ -103020,10 +103072,10 @@
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         </annotation>
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-      <species metaid="MAM01977c" sboTerm="SBO:0000247" id="MAM01977c" name="glutaryl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C26H37N7O19P3S">
+      <species metaid="M_MAM01977c" sboTerm="SBO:0000247" id="M_MAM01977c" name="glutaryl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C26H37N7O19P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01977c">
+            <rdf:Description rdf:about="#M_MAM01977c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/glutcoa"/>
@@ -103038,10 +103090,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM03242m" sboTerm="SBO:0000247" id="MAM03242m" name="3-Hydroxyisovaleryl Coenzyme A" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C26H40N7O18P3S">
+      <species metaid="M_MAM03242m" sboTerm="SBO:0000247" id="M_MAM03242m" name="3-Hydroxyisovaleryl Coenzyme A" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C26H40N7O18P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03242m">
+            <rdf:Description rdf:about="#M_MAM03242m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/3ivcoa"/>
@@ -103054,10 +103106,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM03243c" sboTerm="SBO:0000247" id="MAM03243c" name="3-Hydroxy-Isovaleryl Carnitine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C12H23NO5">
+      <species metaid="M_MAM03243c" sboTerm="SBO:0000247" id="M_MAM03243c" name="3-Hydroxy-Isovaleryl Carnitine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C12H23NO5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03243c">
+            <rdf:Description rdf:about="#M_MAM03243c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/3ivcrn"/>
@@ -103070,10 +103122,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03242c" sboTerm="SBO:0000247" id="MAM03242c" name="3-Hydroxyisovaleryl Coenzyme A" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C26H40N7O18P3S">
+      <species metaid="M_MAM03242c" sboTerm="SBO:0000247" id="M_MAM03242c" name="3-Hydroxyisovaleryl Coenzyme A" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C26H40N7O18P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03242c">
+            <rdf:Description rdf:about="#M_MAM03242c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/3ivcoa"/>
@@ -103086,10 +103138,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03659m" sboTerm="SBO:0000247" id="MAM03659m" name="3-Hexenoyl Coenzyme A" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C27H40N7O17P3S">
+      <species metaid="M_MAM03659m" sboTerm="SBO:0000247" id="M_MAM03659m" name="3-Hexenoyl Coenzyme A" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C27H40N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03659m">
+            <rdf:Description rdf:about="#M_MAM03659m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hexe3coa"/>
@@ -103101,10 +103153,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03659x" sboTerm="SBO:0000247" id="MAM03659x" name="3-Hexenoyl Coenzyme A" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C27H40N7O17P3S">
+      <species metaid="M_MAM03659x" sboTerm="SBO:0000247" id="M_MAM03659x" name="3-Hexenoyl Coenzyme A" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C27H40N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03659x">
+            <rdf:Description rdf:about="#M_MAM03659x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hexe3coa"/>
@@ -103116,10 +103168,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02944x" sboTerm="SBO:0000247" id="MAM02944x" name="succinyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C25H35N7O19P3S">
+      <species metaid="M_MAM02944x" sboTerm="SBO:0000247" id="M_MAM02944x" name="succinyl-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C25H35N7O19P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02944x">
+            <rdf:Description rdf:about="#M_MAM02944x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/succoa"/>
@@ -103134,10 +103186,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03552m" sboTerm="SBO:0000247" id="MAM03552m" name="2,6-Dimethyl Heptanoyl Coenzyme A" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C30H48N7O17P3S">
+      <species metaid="M_MAM03552m" sboTerm="SBO:0000247" id="M_MAM03552m" name="2,6-Dimethyl Heptanoyl Coenzyme A" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C30H48N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03552m">
+            <rdf:Description rdf:about="#M_MAM03552m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:84847"/>
@@ -103149,10 +103201,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03797r" sboTerm="SBO:0000247" id="MAM03797r" name="W-Hydroxydecanoicacid" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H19O3">
+      <species metaid="M_MAM03797r" sboTerm="SBO:0000247" id="M_MAM03797r" name="W-Hydroxydecanoicacid" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H19O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03797r">
+            <rdf:Description rdf:about="#M_MAM03797r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/omhdecacid"/>
@@ -103164,10 +103216,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03654c" sboTerm="SBO:0000247" id="MAM03654c" name="Hexadecanediocacid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C16H28O4">
+      <species metaid="M_MAM03654c" sboTerm="SBO:0000247" id="M_MAM03654c" name="Hexadecanediocacid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C16H28O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03654c">
+            <rdf:Description rdf:about="#M_MAM03654c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hexdiac"/>
@@ -103180,10 +103232,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03798c" sboTerm="SBO:0000247" id="MAM03798c" name="W-Hydroxydocosanoicacid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C22H42O3">
+      <species metaid="M_MAM03798c" sboTerm="SBO:0000247" id="M_MAM03798c" name="W-Hydroxydocosanoicacid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C22H42O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03798c">
+            <rdf:Description rdf:about="#M_MAM03798c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/omhdocosac"/>
@@ -103196,10 +103248,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03797c" sboTerm="SBO:0000247" id="MAM03797c" name="W-Hydroxydecanoicacid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H19O3">
+      <species metaid="M_MAM03797c" sboTerm="SBO:0000247" id="M_MAM03797c" name="W-Hydroxydecanoicacid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H19O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03797c">
+            <rdf:Description rdf:about="#M_MAM03797c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/omhdecacid"/>
@@ -103211,10 +103263,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03923c" sboTerm="SBO:0000247" id="MAM03923c" name="Sebacicacid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C10H16O4">
+      <species metaid="M_MAM03923c" sboTerm="SBO:0000247" id="M_MAM03923c" name="Sebacicacid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C10H16O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03923c">
+            <rdf:Description rdf:about="#M_MAM03923c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/sebacid"/>
@@ -103230,10 +103282,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03969m" sboTerm="SBO:0000247" id="MAM03969m" name="Trans4Decenoyl Coenzyme A" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C31H48N7O17P3S">
+      <species metaid="M_MAM03969m" sboTerm="SBO:0000247" id="M_MAM03969m" name="Trans4Decenoyl Coenzyme A" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C31H48N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03969m">
+            <rdf:Description rdf:about="#M_MAM03969m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/tdec4ecoa"/>
@@ -103244,10 +103296,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03522m" sboTerm="SBO:0000247" id="MAM03522m" name="Cis2Trans4Decadienoyl Coenzyme A" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C31H46N7O17P3S">
+      <species metaid="M_MAM03522m" sboTerm="SBO:0000247" id="M_MAM03522m" name="Cis2Trans4Decadienoyl Coenzyme A" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C31H46N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03522m">
+            <rdf:Description rdf:about="#M_MAM03522m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ctdecdcoa"/>
@@ -103259,10 +103311,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03966m" sboTerm="SBO:0000247" id="MAM03966m" name="Trans2,6Dodecadienoyl Coenzyme A" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C33H50N7O17P3S">
+      <species metaid="M_MAM03966m" sboTerm="SBO:0000247" id="M_MAM03966m" name="Trans2,6Dodecadienoyl Coenzyme A" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C33H50N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03966m">
+            <rdf:Description rdf:about="#M_MAM03966m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/tddedi2coa"/>
@@ -103273,10 +103325,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03967m" sboTerm="SBO:0000247" id="MAM03967m" name="Trans3,6Dodecadienoyl Coenzyme A" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C33H50N7O17P3S">
+      <species metaid="M_MAM03967m" sboTerm="SBO:0000247" id="M_MAM03967m" name="Trans3,6Dodecadienoyl Coenzyme A" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C33H50N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03967m">
+            <rdf:Description rdf:about="#M_MAM03967m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/tddedicoa"/>
@@ -103288,10 +103340,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03790c" sboTerm="SBO:0000247" id="MAM03790c" name="11-Octadecenoyl Carnitine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H47NO4">
+      <species metaid="M_MAM03790c" sboTerm="SBO:0000247" id="M_MAM03790c" name="11-Octadecenoyl Carnitine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H47NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03790c">
+            <rdf:Description rdf:about="#M_MAM03790c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ocdececrn"/>
@@ -103305,10 +103357,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03790m" sboTerm="SBO:0000247" id="MAM03790m" name="11-Octadecenoyl Carnitine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H47NO4">
+      <species metaid="M_MAM03790m" sboTerm="SBO:0000247" id="M_MAM03790m" name="11-Octadecenoyl Carnitine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H47NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03790m">
+            <rdf:Description rdf:about="#M_MAM03790m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ocdececrn"/>
@@ -103322,10 +103374,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03793c" sboTerm="SBO:0000247" id="MAM03793c" name="Octadecenoyl Carnitine (Hypothetical, Position Of Double Bond Unknown)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H47NO4">
+      <species metaid="M_MAM03793c" sboTerm="SBO:0000247" id="M_MAM03793c" name="Octadecenoyl Carnitine (Hypothetical, Position Of Double Bond Unknown)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H47NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03793c">
+            <rdf:Description rdf:about="#M_MAM03793c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/octdececrn"/>
@@ -103336,10 +103388,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03793m" sboTerm="SBO:0000247" id="MAM03793m" name="Octadecenoyl Carnitine (Hypothetical, Position Of Double Bond Unknown)" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H47NO4">
+      <species metaid="M_MAM03793m" sboTerm="SBO:0000247" id="M_MAM03793m" name="Octadecenoyl Carnitine (Hypothetical, Position Of Double Bond Unknown)" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H47NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03793m">
+            <rdf:Description rdf:about="#M_MAM03793m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/octdececrn"/>
@@ -103350,10 +103402,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03792c" sboTerm="SBO:0000247" id="MAM03792c" name="Octadecenoyl Coenzyme A" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C39H64N7O17P3S">
+      <species metaid="M_MAM03792c" sboTerm="SBO:0000247" id="M_MAM03792c" name="Octadecenoyl Coenzyme A" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C39H64N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03792c">
+            <rdf:Description rdf:about="#M_MAM03792c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/octdececoa"/>
@@ -103364,10 +103416,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03954x" sboTerm="SBO:0000247" id="MAM03954x" name="Suberic Acid" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C8H12O4">
+      <species metaid="M_MAM03954x" sboTerm="SBO:0000247" id="M_MAM03954x" name="Suberic Acid" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C8H12O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03954x">
+            <rdf:Description rdf:about="#M_MAM03954x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/subeac"/>
@@ -103383,10 +103435,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03923x" sboTerm="SBO:0000247" id="MAM03923x" name="Sebacicacid" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C10H16O4">
+      <species metaid="M_MAM03923x" sboTerm="SBO:0000247" id="M_MAM03923x" name="Sebacicacid" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C10H16O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03923x">
+            <rdf:Description rdf:about="#M_MAM03923x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/sebacid"/>
@@ -103402,10 +103454,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03954c" sboTerm="SBO:0000247" id="MAM03954c" name="Suberic Acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C8H12O4">
+      <species metaid="M_MAM03954c" sboTerm="SBO:0000247" id="M_MAM03954c" name="Suberic Acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C8H12O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03954c">
+            <rdf:Description rdf:about="#M_MAM03954c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/subeac"/>
@@ -103421,10 +103473,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03502x" sboTerm="SBO:0000247" id="MAM03502x" name="Suberyl Carnitine" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C15H26NO6">
+      <species metaid="M_MAM03502x" sboTerm="SBO:0000247" id="M_MAM03502x" name="Suberyl Carnitine" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C15H26NO6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03502x">
+            <rdf:Description rdf:about="#M_MAM03502x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/c8dc"/>
@@ -103436,10 +103488,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02974e" sboTerm="SBO:0000247" id="MAM02974e" name="tetradecenoylcarnitine(5)" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H39NO4">
+      <species metaid="M_MAM02974e" sboTerm="SBO:0000247" id="M_MAM02974e" name="tetradecenoylcarnitine(5)" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H39NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02974e">
+            <rdf:Description rdf:about="#M_MAM02974e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM163039"/>
@@ -103450,10 +103502,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03037e" sboTerm="SBO:0000247" id="MAM03037e" name="trans-4-hydroxy-L-proline" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H9NO3">
+      <species metaid="M_MAM03037e" sboTerm="SBO:0000247" id="M_MAM03037e" name="trans-4-hydroxy-L-proline" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H9NO3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03037e">
+            <rdf:Description rdf:about="#M_MAM03037e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/4hpro_LT"/>
@@ -103470,10 +103522,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03164e" sboTerm="SBO:0000247" id="MAM03164e" name="D-alanyl-D-alanine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H12N2O3">
+      <species metaid="M_MAM03164e" sboTerm="SBO:0000247" id="M_MAM03164e" name="D-alanyl-D-alanine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H12N2O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03164e">
+            <rdf:Description rdf:about="#M_MAM03164e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/alaala"/>
@@ -103489,10 +103541,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03483e" sboTerm="SBO:0000247" id="MAM03483e" name="Beta-Glucans" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C1200000H2200000O1100000">
+      <species metaid="M_MAM03483e" sboTerm="SBO:0000247" id="M_MAM03483e" name="Beta-Glucans" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C1200000H2200000O1100000">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03483e">
+            <rdf:Description rdf:about="#M_MAM03483e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/bglc"/>
@@ -103504,10 +103556,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03595e" sboTerm="SBO:0000247" id="MAM03595e" name="Beta Glucan-Glycocholate Complex" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C1200026H2200043NO1100006">
+      <species metaid="M_MAM03595e" sboTerm="SBO:0000247" id="M_MAM03595e" name="Beta Glucan-Glycocholate Complex" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C1200026H2200043NO1100006">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03595e">
+            <rdf:Description rdf:about="#M_MAM03595e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/glgchlo"/>
@@ -103519,10 +103571,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03604e" sboTerm="SBO:0000247" id="MAM03604e" name="Beta Glucan-Taurocholic Acid Complex" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C1200026H2200045NO1100007S">
+      <species metaid="M_MAM03604e" sboTerm="SBO:0000247" id="M_MAM03604e" name="Beta Glucan-Taurocholic Acid Complex" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C1200026H2200045NO1100007S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03604e">
+            <rdf:Description rdf:about="#M_MAM03604e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/gltcho"/>
@@ -103534,10 +103586,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02964e" sboTerm="SBO:0000247" id="MAM02964e" name="taurodeoxycholate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C26H44NO6S">
+      <species metaid="M_MAM02964e" sboTerm="SBO:0000247" id="M_MAM02964e" name="taurodeoxycholate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C26H44NO6S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02964e">
+            <rdf:Description rdf:about="#M_MAM02964e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:9410"/>
@@ -103552,10 +103604,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03605e" sboTerm="SBO:0000247" id="MAM03605e" name="Beta Glucan-Taurodeoxycholic Acid Complex" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C1200026H2200044NO1100006S">
+      <species metaid="M_MAM03605e" sboTerm="SBO:0000247" id="M_MAM03605e" name="Beta Glucan-Taurodeoxycholic Acid Complex" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C1200026H2200044NO1100006S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03605e">
+            <rdf:Description rdf:about="#M_MAM03605e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/gltdechol"/>
@@ -103567,10 +103619,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01423e" sboTerm="SBO:0000247" id="MAM01423e" name="carnosine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H14N4O3">
+      <species metaid="M_MAM01423e" sboTerm="SBO:0000247" id="M_MAM01423e" name="carnosine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H14N4O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01423e">
+            <rdf:Description rdf:about="#M_MAM01423e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/carn"/>
@@ -103588,10 +103640,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01600c" sboTerm="SBO:0000247" id="MAM01600c" name="cobamide-coenzyme" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C72H100CoN18O17P">
+      <species metaid="M_MAM01600c" sboTerm="SBO:0000247" id="M_MAM01600c" name="cobamide-coenzyme" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C72H100CoN18O17P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01600c">
+            <rdf:Description rdf:about="#M_MAM01600c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/adocbl"/>
@@ -103605,10 +103657,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01600e" sboTerm="SBO:0000247" id="MAM01600e" name="cobamide-coenzyme" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C72H100CoN18O17P">
+      <species metaid="M_MAM01600e" sboTerm="SBO:0000247" id="M_MAM01600e" name="cobamide-coenzyme" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C72H100CoN18O17P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01600e">
+            <rdf:Description rdf:about="#M_MAM01600e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/adocbl"/>
@@ -103622,10 +103674,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03621c" sboTerm="SBO:0000247" id="MAM03621c" name="Glycyl-Glycine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H8N2O3">
+      <species metaid="M_MAM03621c" sboTerm="SBO:0000247" id="M_MAM03621c" name="Glycyl-Glycine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H8N2O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03621c">
+            <rdf:Description rdf:about="#M_MAM03621c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/glygly"/>
@@ -103639,10 +103691,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03621e" sboTerm="SBO:0000247" id="MAM03621e" name="Glycyl-Glycine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H8N2O3">
+      <species metaid="M_MAM03621e" sboTerm="SBO:0000247" id="M_MAM03621e" name="Glycyl-Glycine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H8N2O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03621e">
+            <rdf:Description rdf:about="#M_MAM03621e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/glygly"/>
@@ -103656,10 +103708,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03629e" sboTerm="SBO:0000247" id="MAM03629e" name="Glycyl-Phenylalanine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C11H14N2O3">
+      <species metaid="M_MAM03629e" sboTerm="SBO:0000247" id="M_MAM03629e" name="Glycyl-Phenylalanine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C11H14N2O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03629e">
+            <rdf:Description rdf:about="#M_MAM03629e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/glyphe"/>
@@ -103673,10 +103725,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03629c" sboTerm="SBO:0000247" id="MAM03629c" name="Glycyl-Phenylalanine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C11H14N2O3">
+      <species metaid="M_MAM03629c" sboTerm="SBO:0000247" id="M_MAM03629c" name="Glycyl-Phenylalanine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C11H14N2O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03629c">
+            <rdf:Description rdf:about="#M_MAM03629c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/glyphe"/>
@@ -103690,10 +103742,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03630e" sboTerm="SBO:0000247" id="MAM03630e" name="Glycylproline" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H12N2O3">
+      <species metaid="M_MAM03630e" sboTerm="SBO:0000247" id="M_MAM03630e" name="Glycylproline" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H12N2O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03630e">
+            <rdf:Description rdf:about="#M_MAM03630e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/glypro"/>
@@ -103709,10 +103761,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03630c" sboTerm="SBO:0000247" id="MAM03630c" name="Glycylproline" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H12N2O3">
+      <species metaid="M_MAM03630c" sboTerm="SBO:0000247" id="M_MAM03630c" name="Glycylproline" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H12N2O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03630c">
+            <rdf:Description rdf:about="#M_MAM03630c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/glypro"/>
@@ -103728,10 +103780,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03631c" sboTerm="SBO:0000247" id="MAM03631c" name="Glycylsarcosine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H10N2O3">
+      <species metaid="M_MAM03631c" sboTerm="SBO:0000247" id="M_MAM03631c" name="Glycylsarcosine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H10N2O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03631c">
+            <rdf:Description rdf:about="#M_MAM03631c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/glysar"/>
@@ -103745,10 +103797,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03631e" sboTerm="SBO:0000247" id="MAM03631e" name="Glycylsarcosine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H10N2O3">
+      <species metaid="M_MAM03631e" sboTerm="SBO:0000247" id="M_MAM03631e" name="Glycylsarcosine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H10N2O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03631e">
+            <rdf:Description rdf:about="#M_MAM03631e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/glysar"/>
@@ -103762,10 +103814,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00745e" sboTerm="SBO:0000247" id="MAM00745e" name="3alpha,12alpha-dihydroxy-5beta-cholanate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H39O4">
+      <species metaid="M_MAM00745e" sboTerm="SBO:0000247" id="M_MAM00745e" name="3alpha,12alpha-dihydroxy-5beta-cholanate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H39O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00745e">
+            <rdf:Description rdf:about="#M_MAM00745e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:28834"/>
@@ -103781,10 +103833,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03638e" sboTerm="SBO:0000247" id="MAM03638e" name="Gums" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C2760000H5060000O2530000">
+      <species metaid="M_MAM03638e" sboTerm="SBO:0000247" id="M_MAM03638e" name="Gums" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C2760000H5060000O2530000">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03638e">
+            <rdf:Description rdf:about="#M_MAM03638e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/gum"/>
@@ -103796,10 +103848,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03639e" sboTerm="SBO:0000247" id="MAM03639e" name="Guar Gum-Deoxyxholic Acid Complex" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C2760024H5060039O2530004">
+      <species metaid="M_MAM03639e" sboTerm="SBO:0000247" id="M_MAM03639e" name="Guar Gum-Deoxyxholic Acid Complex" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C2760024H5060039O2530004">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03639e">
+            <rdf:Description rdf:about="#M_MAM03639e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/gumdchac"/>
@@ -103811,10 +103863,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03640e" sboTerm="SBO:0000247" id="MAM03640e" name="Guar Gum-Glycocholate Complex" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C2760026H5060043NO2530006">
+      <species metaid="M_MAM03640e" sboTerm="SBO:0000247" id="M_MAM03640e" name="Guar Gum-Glycocholate Complex" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C2760026H5060043NO2530006">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03640e">
+            <rdf:Description rdf:about="#M_MAM03640e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/gumgchol"/>
@@ -103826,10 +103878,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03641e" sboTerm="SBO:0000247" id="MAM03641e" name="Guar Gum-Taurocholic Acid Complex" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C2760026H5060045NO2530007S">
+      <species metaid="M_MAM03641e" sboTerm="SBO:0000247" id="M_MAM03641e" name="Guar Gum-Taurocholic Acid Complex" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C2760026H5060045NO2530007S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03641e">
+            <rdf:Description rdf:about="#M_MAM03641e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/gumtchol"/>
@@ -103841,10 +103893,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03714e" sboTerm="SBO:0000247" id="MAM03714e" name="Leucyl-Glycine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H16N2O3">
+      <species metaid="M_MAM03714e" sboTerm="SBO:0000247" id="M_MAM03714e" name="Leucyl-Glycine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H16N2O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03714e">
+            <rdf:Description rdf:about="#M_MAM03714e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/leugly"/>
@@ -103858,10 +103910,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03714c" sboTerm="SBO:0000247" id="MAM03714c" name="Leucyl-Glycine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H16N2O3">
+      <species metaid="M_MAM03714c" sboTerm="SBO:0000247" id="M_MAM03714c" name="Leucyl-Glycine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H16N2O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03714c">
+            <rdf:Description rdf:about="#M_MAM03714c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/leugly"/>
@@ -103875,10 +103927,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03715c" sboTerm="SBO:0000247" id="MAM03715c" name="Leucylleucine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C12H24N2O3">
+      <species metaid="M_MAM03715c" sboTerm="SBO:0000247" id="M_MAM03715c" name="Leucylleucine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C12H24N2O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03715c">
+            <rdf:Description rdf:about="#M_MAM03715c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/leuleu"/>
@@ -103892,10 +103944,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03715e" sboTerm="SBO:0000247" id="MAM03715e" name="Leucylleucine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C12H24N2O3">
+      <species metaid="M_MAM03715e" sboTerm="SBO:0000247" id="M_MAM03715e" name="Leucylleucine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C12H24N2O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03715e">
+            <rdf:Description rdf:about="#M_MAM03715e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/leuleu"/>
@@ -103909,10 +103961,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03851e" sboTerm="SBO:0000247" id="MAM03851e" name="Pectin" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C2535H3509O2535">
+      <species metaid="M_MAM03851e" sboTerm="SBO:0000247" id="M_MAM03851e" name="Pectin" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C2535H3509O2535">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03851e">
+            <rdf:Description rdf:about="#M_MAM03851e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pect"/>
@@ -103928,10 +103980,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03852e" sboTerm="SBO:0000247" id="MAM03852e" name="Pectin-Deoxycholic Acid Complex" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C2559H3549O2539">
+      <species metaid="M_MAM03852e" sboTerm="SBO:0000247" id="M_MAM03852e" name="Pectin-Deoxycholic Acid Complex" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C2559H3549O2539">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03852e">
+            <rdf:Description rdf:about="#M_MAM03852e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pectindchac"/>
@@ -103943,10 +103995,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03853e" sboTerm="SBO:0000247" id="MAM03853e" name="Pectin-Glycocholate Complex" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C2561H3553NO2541">
+      <species metaid="M_MAM03853e" sboTerm="SBO:0000247" id="M_MAM03853e" name="Pectin-Glycocholate Complex" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C2561H3553NO2541">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03853e">
+            <rdf:Description rdf:about="#M_MAM03853e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pectingchol"/>
@@ -103958,10 +104010,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03854e" sboTerm="SBO:0000247" id="MAM03854e" name="Pectin-Taurocholic Acid Complex" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C2561H3555NO2542S">
+      <species metaid="M_MAM03854e" sboTerm="SBO:0000247" id="M_MAM03854e" name="Pectin-Taurocholic Acid Complex" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C2561H3555NO2542S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03854e">
+            <rdf:Description rdf:about="#M_MAM03854e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pectintchol"/>
@@ -103973,10 +104025,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03896e" sboTerm="SBO:0000247" id="MAM03896e" name="L-Prolinylglycine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H12N2O3">
+      <species metaid="M_MAM03896e" sboTerm="SBO:0000247" id="M_MAM03896e" name="L-Prolinylglycine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H12N2O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03896e">
+            <rdf:Description rdf:about="#M_MAM03896e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/progly"/>
@@ -103990,10 +104042,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03896c" sboTerm="SBO:0000247" id="MAM03896c" name="L-Prolinylglycine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H12N2O3">
+      <species metaid="M_MAM03896c" sboTerm="SBO:0000247" id="M_MAM03896c" name="L-Prolinylglycine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H12N2O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03896c">
+            <rdf:Description rdf:about="#M_MAM03896c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/progly"/>
@@ -104007,10 +104059,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03907e" sboTerm="SBO:0000247" id="MAM03907e" name="Psyllium" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9642006H15428700O8667414">
+      <species metaid="M_MAM03907e" sboTerm="SBO:0000247" id="M_MAM03907e" name="Psyllium" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9642006H15428700O8667414">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03907e">
+            <rdf:Description rdf:about="#M_MAM03907e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/psyl"/>
@@ -104022,10 +104074,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03908e" sboTerm="SBO:0000247" id="MAM03908e" name="Psillium-Glycocholic Acid Complex" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9642032H15428743NO8667420">
+      <species metaid="M_MAM03908e" sboTerm="SBO:0000247" id="M_MAM03908e" name="Psillium-Glycocholic Acid Complex" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9642032H15428743NO8667420">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03908e">
+            <rdf:Description rdf:about="#M_MAM03908e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/psylchol"/>
@@ -104037,10 +104089,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03909e" sboTerm="SBO:0000247" id="MAM03909e" name="Psyllium-Taurocholic Acid Complex" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9642032H15428745NO8667421S">
+      <species metaid="M_MAM03909e" sboTerm="SBO:0000247" id="M_MAM03909e" name="Psyllium-Taurocholic Acid Complex" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9642032H15428745NO8667421S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03909e">
+            <rdf:Description rdf:about="#M_MAM03909e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/psyltchol"/>
@@ -104052,10 +104104,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03910e" sboTerm="SBO:0000247" id="MAM03910e" name="Psyllium-Taurodeoxycholic Acid Complex" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C9642032H15428744NO8667420S">
+      <species metaid="M_MAM03910e" sboTerm="SBO:0000247" id="M_MAM03910e" name="Psyllium-Taurodeoxycholic Acid Complex" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C9642032H15428744NO8667420S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03910e">
+            <rdf:Description rdf:about="#M_MAM03910e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/psyltdechol"/>
@@ -104067,10 +104119,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01417n" sboTerm="SBO:0000247" id="MAM01417n" name="calcitriol" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H44O3">
+      <species metaid="M_MAM01417n" sboTerm="SBO:0000247" id="M_MAM01417n" name="calcitriol" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H44O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01417n">
+            <rdf:Description rdf:about="#M_MAM01417n">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/1a25dhvitd3"/>
@@ -104089,10 +104141,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00970n" sboTerm="SBO:0000247" id="MAM00970n" name="4-aminobutyrate" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H9NO2">
+      <species metaid="M_MAM00970n" sboTerm="SBO:0000247" id="M_MAM00970n" name="4-aminobutyrate" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H9NO2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00970n">
+            <rdf:Description rdf:about="#M_MAM00970n">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/4abut"/>
@@ -104109,10 +104161,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02157e" sboTerm="SBO:0000247" id="MAM02157e" name="hypotaurine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C2H7NO2S">
+      <species metaid="M_MAM02157e" sboTerm="SBO:0000247" id="M_MAM02157e" name="hypotaurine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C2H7NO2S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02157e">
+            <rdf:Description rdf:about="#M_MAM02157e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hyptaur"/>
@@ -104130,10 +104182,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01627e" sboTerm="SBO:0000247" id="MAM01627e" name="cysteamine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C2H8NS">
+      <species metaid="M_MAM01627e" sboTerm="SBO:0000247" id="M_MAM01627e" name="cysteamine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C2H8NS">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01627e">
+            <rdf:Description rdf:about="#M_MAM01627e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/cysam"/>
@@ -104149,10 +104201,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03103e" sboTerm="SBO:0000247" id="MAM03103e" name="ubiquinone" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C59H90O4">
+      <species metaid="M_MAM03103e" sboTerm="SBO:0000247" id="M_MAM03103e" name="ubiquinone" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C59H90O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03103e">
+            <rdf:Description rdf:about="#M_MAM03103e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/q10"/>
@@ -104168,10 +104220,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01674e" sboTerm="SBO:0000247" id="MAM01674e" name="dephospho-CoA" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C21H33N7O13P2S">
+      <species metaid="M_MAM01674e" sboTerm="SBO:0000247" id="M_MAM01674e" name="dephospho-CoA" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C21H33N7O13P2S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01674e">
+            <rdf:Description rdf:about="#M_MAM01674e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dpcoa"/>
@@ -104186,10 +104238,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02741e" sboTerm="SBO:0000247" id="MAM02741e" name="phosphopantetheine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C11H21N2O7PS">
+      <species metaid="M_MAM02741e" sboTerm="SBO:0000247" id="M_MAM02741e" name="phosphopantetheine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C11H21N2O7PS">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02741e">
+            <rdf:Description rdf:about="#M_MAM02741e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pan4p"/>
@@ -104204,10 +104256,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03933e" sboTerm="SBO:0000247" id="MAM03933e" name="S-Sulfo-L-Cysteine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C3H8NO5S2">
+      <species metaid="M_MAM03933e" sboTerm="SBO:0000247" id="M_MAM03933e" name="S-Sulfo-L-Cysteine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C3H8NO5S2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03933e">
+            <rdf:Description rdf:about="#M_MAM03933e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/slfcys"/>
@@ -104223,10 +104275,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01828e" sboTerm="SBO:0000247" id="MAM01828e" name="FMN" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C17H19N4O9P">
+      <species metaid="M_MAM01828e" sboTerm="SBO:0000247" id="M_MAM01828e" name="FMN" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C17H19N4O9P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01828e">
+            <rdf:Description rdf:about="#M_MAM01828e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/fmn"/>
@@ -104242,10 +104294,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02679e" sboTerm="SBO:0000247" id="MAM02679e" name="pantetheine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C11H22N2O4S">
+      <species metaid="M_MAM02679e" sboTerm="SBO:0000247" id="M_MAM02679e" name="pantetheine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C11H22N2O4S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02679e">
+            <rdf:Description rdf:about="#M_MAM02679e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ptth"/>
@@ -104262,10 +104314,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03102e" sboTerm="SBO:0000247" id="MAM03102e" name="ubiquinol" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C59H92O4">
+      <species metaid="M_MAM03102e" sboTerm="SBO:0000247" id="M_MAM03102e" name="ubiquinol" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C59H92O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03102e">
+            <rdf:Description rdf:about="#M_MAM03102e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/q10h2"/>
@@ -104281,10 +104333,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02439x" sboTerm="SBO:0000247" id="MAM02439x" name="malate" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C4H4O5">
+      <species metaid="M_MAM02439x" sboTerm="SBO:0000247" id="M_MAM02439x" name="malate" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C4H4O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02439x">
+            <rdf:Description rdf:about="#M_MAM02439x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/mal__L"/>
@@ -104300,10 +104352,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03933c" sboTerm="SBO:0000247" id="MAM03933c" name="S-Sulfo-L-Cysteine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C3H8NO5S2">
+      <species metaid="M_MAM03933c" sboTerm="SBO:0000247" id="M_MAM03933c" name="S-Sulfo-L-Cysteine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C3H8NO5S2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03933c">
+            <rdf:Description rdf:about="#M_MAM03933c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/slfcys"/>
@@ -104319,10 +104371,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01005e" sboTerm="SBO:0000247" id="MAM01005e" name="4-hydroxyphenylpyruvate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C9H7O4">
+      <species metaid="M_MAM01005e" sboTerm="SBO:0000247" id="M_MAM01005e" name="4-hydroxyphenylpyruvate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C9H7O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01005e">
+            <rdf:Description rdf:about="#M_MAM01005e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/34hpp"/>
@@ -104338,10 +104390,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00824e" sboTerm="SBO:0000247" id="MAM00824e" name="3-methyl-2-oxobutyrate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C5H7O3">
+      <species metaid="M_MAM00824e" sboTerm="SBO:0000247" id="M_MAM00824e" name="3-methyl-2-oxobutyrate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C5H7O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00824e">
+            <rdf:Description rdf:about="#M_MAM00824e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/3mob"/>
@@ -104357,10 +104409,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00669e" sboTerm="SBO:0000247" id="MAM00669e" name="2-oxo-3-methylvalerate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H9O3">
+      <species metaid="M_MAM00669e" sboTerm="SBO:0000247" id="M_MAM00669e" name="2-oxo-3-methylvalerate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H9O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00669e">
+            <rdf:Description rdf:about="#M_MAM00669e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/3mop"/>
@@ -104376,10 +104428,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01013e" sboTerm="SBO:0000247" id="MAM01013e" name="4-methyl-2-oxopentanoate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H9O3">
+      <species metaid="M_MAM01013e" sboTerm="SBO:0000247" id="M_MAM01013e" name="4-methyl-2-oxopentanoate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H9O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01013e">
+            <rdf:Description rdf:about="#M_MAM01013e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/4mop"/>
@@ -104395,10 +104447,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01116e" sboTerm="SBO:0000247" id="MAM01116e" name="5-methylthioadenosine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C11H15N5O3S">
+      <species metaid="M_MAM01116e" sboTerm="SBO:0000247" id="M_MAM01116e" name="5-methylthioadenosine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C11H15N5O3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01116e">
+            <rdf:Description rdf:about="#M_MAM01116e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/5mta"/>
@@ -104415,10 +104467,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01127e" sboTerm="SBO:0000247" id="MAM01127e" name="5-oxoproline" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C5H6NO3">
+      <species metaid="M_MAM01127e" sboTerm="SBO:0000247" id="M_MAM01127e" name="5-oxoproline" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C5H6NO3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01127e">
+            <rdf:Description rdf:about="#M_MAM01127e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/5oxpro"/>
@@ -104434,10 +104486,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02871e" sboTerm="SBO:0000247" id="MAM02871e" name="SAH" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C14H20N6O5S">
+      <species metaid="M_MAM02871e" sboTerm="SBO:0000247" id="M_MAM02871e" name="SAH" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C14H20N6O5S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02871e">
+            <rdf:Description rdf:about="#M_MAM02871e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ahcys"/>
@@ -104454,10 +104506,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01304e" sboTerm="SBO:0000247" id="MAM01304e" name="AICAR" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C9H13N4O8P">
+      <species metaid="M_MAM01304e" sboTerm="SBO:0000247" id="M_MAM01304e" name="AICAR" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C9H13N4O8P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01304e">
+            <rdf:Description rdf:about="#M_MAM01304e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/aicar"/>
@@ -104472,10 +104524,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01342e" sboTerm="SBO:0000247" id="MAM01342e" name="anthranilate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C7H6NO2">
+      <species metaid="M_MAM01342e" sboTerm="SBO:0000247" id="M_MAM01342e" name="anthranilate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C7H6NO2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01342e">
+            <rdf:Description rdf:about="#M_MAM01342e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/anth"/>
@@ -104491,10 +104543,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02559e" sboTerm="SBO:0000247" id="MAM02559e" name="N-carbamoyl-L-aspartate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C5H6N2O5">
+      <species metaid="M_MAM02559e" sboTerm="SBO:0000247" id="M_MAM02559e" name="N-carbamoyl-L-aspartate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C5H6N2O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02559e">
+            <rdf:Description rdf:about="#M_MAM02559e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/cbasp"/>
@@ -104509,10 +104561,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02439e" sboTerm="SBO:0000247" id="MAM02439e" name="malate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C4H4O5">
+      <species metaid="M_MAM02439e" sboTerm="SBO:0000247" id="M_MAM02439e" name="malate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C4H4O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02439e">
+            <rdf:Description rdf:about="#M_MAM02439e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/mal__L"/>
@@ -104528,10 +104580,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01103e" sboTerm="SBO:0000247" id="MAM01103e" name="5-hydroxyindoleacetate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H8NO3">
+      <species metaid="M_MAM01103e" sboTerm="SBO:0000247" id="M_MAM01103e" name="5-hydroxyindoleacetate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H8NO3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01103e">
+            <rdf:Description rdf:about="#M_MAM01103e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/5hoxindoa"/>
@@ -104548,10 +104600,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01981e" sboTerm="SBO:0000247" id="MAM01981e" name="glyceraldehyde" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H6O3">
+      <species metaid="M_MAM01981e" sboTerm="SBO:0000247" id="M_MAM01981e" name="glyceraldehyde" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H6O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01981e">
+            <rdf:Description rdf:about="#M_MAM01981e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/glyald"/>
@@ -104568,10 +104620,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02696e" sboTerm="SBO:0000247" id="MAM02696e" name="PEP" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C3H2O6P">
+      <species metaid="M_MAM02696e" sboTerm="SBO:0000247" id="M_MAM02696e" name="PEP" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C3H2O6P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02696e">
+            <rdf:Description rdf:about="#M_MAM02696e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pep"/>
@@ -104587,10 +104639,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02036e" sboTerm="SBO:0000247" id="MAM02036e" name="guanidinoacetate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H7N3O2">
+      <species metaid="M_MAM02036e" sboTerm="SBO:0000247" id="M_MAM02036e" name="guanidinoacetate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H7N3O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02036e">
+            <rdf:Description rdf:about="#M_MAM02036e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/gudac"/>
@@ -104608,10 +104660,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02319e" sboTerm="SBO:0000247" id="MAM02319e" name="kynurenine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H12N2O3">
+      <species metaid="M_MAM02319e" sboTerm="SBO:0000247" id="M_MAM02319e" name="kynurenine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H12N2O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02319e">
+            <rdf:Description rdf:about="#M_MAM02319e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/Lkynr"/>
@@ -104628,10 +104680,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00923e" sboTerm="SBO:0000247" id="MAM00923e" name="3-ureidopropionate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C4H7N2O3">
+      <species metaid="M_MAM00923e" sboTerm="SBO:0000247" id="M_MAM00923e" name="3-ureidopropionate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C4H7N2O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00923e">
+            <rdf:Description rdf:about="#M_MAM00923e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/cala"/>
@@ -104647,10 +104699,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00990e" sboTerm="SBO:0000247" id="MAM00990e" name="4-hydroxy-2-quinolinecarboxylic acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H6NO3">
+      <species metaid="M_MAM00990e" sboTerm="SBO:0000247" id="M_MAM00990e" name="4-hydroxy-2-quinolinecarboxylic acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H6NO3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00990e">
+            <rdf:Description rdf:about="#M_MAM00990e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/kynate"/>
@@ -104666,10 +104718,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00775e" sboTerm="SBO:0000247" id="MAM00775e" name="3-hydroxyanthranilate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H7NO3">
+      <species metaid="M_MAM00775e" sboTerm="SBO:0000247" id="M_MAM00775e" name="3-hydroxyanthranilate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H7NO3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00775e">
+            <rdf:Description rdf:about="#M_MAM00775e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/3hanthrn"/>
@@ -104684,10 +104736,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00788e" sboTerm="SBO:0000247" id="MAM00788e" name="3-hydroxy-L-kynurenine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H12N2O4">
+      <species metaid="M_MAM00788e" sboTerm="SBO:0000247" id="M_MAM00788e" name="3-hydroxy-L-kynurenine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H12N2O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00788e">
+            <rdf:Description rdf:about="#M_MAM00788e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hLkynr"/>
@@ -104704,10 +104756,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02822e" sboTerm="SBO:0000247" id="MAM02822e" name="quinolinate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C7H3NO4">
+      <species metaid="M_MAM02822e" sboTerm="SBO:0000247" id="M_MAM02822e" name="quinolinate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C7H3NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02822e">
+            <rdf:Description rdf:about="#M_MAM02822e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/quln"/>
@@ -104723,10 +104775,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00674e" sboTerm="SBO:0000247" id="MAM00674e" name="2-phospho-D-glycerate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C3H4O7P">
+      <species metaid="M_MAM00674e" sboTerm="SBO:0000247" id="M_MAM00674e" name="2-phospho-D-glycerate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C3H4O7P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00674e">
+            <rdf:Description rdf:about="#M_MAM00674e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/2pg"/>
@@ -104741,10 +104793,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02738e" sboTerm="SBO:0000247" id="MAM02738e" name="phosphocholine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C5H13NO4P">
+      <species metaid="M_MAM02738e" sboTerm="SBO:0000247" id="M_MAM02738e" name="phosphocholine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C5H13NO4P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02738e">
+            <rdf:Description rdf:about="#M_MAM02738e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/cholp"/>
@@ -104760,10 +104812,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02349e" sboTerm="SBO:0000247" id="MAM02349e" name="L-cystathionine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H14N2O4S">
+      <species metaid="M_MAM02349e" sboTerm="SBO:0000247" id="M_MAM02349e" name="L-cystathionine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H14N2O4S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02349e">
+            <rdf:Description rdf:about="#M_MAM02349e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/cyst__L"/>
@@ -104781,10 +104833,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01644e" sboTerm="SBO:0000247" id="MAM01644e" name="dCMP" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C9H12N3O7P">
+      <species metaid="M_MAM01644e" sboTerm="SBO:0000247" id="M_MAM01644e" name="dCMP" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C9H12N3O7P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01644e">
+            <rdf:Description rdf:about="#M_MAM01644e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dcmp"/>
@@ -104799,10 +104851,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01708e" sboTerm="SBO:0000247" id="MAM01708e" name="dimethylglycine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H9NO2">
+      <species metaid="M_MAM01708e" sboTerm="SBO:0000247" id="M_MAM01708e" name="dimethylglycine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H9NO2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01708e">
+            <rdf:Description rdf:about="#M_MAM01708e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dmgly"/>
@@ -104819,10 +104871,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01798e" sboTerm="SBO:0000247" id="MAM01798e" name="ethanolamine-phosphate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C2H7NO4P">
+      <species metaid="M_MAM01798e" sboTerm="SBO:0000247" id="M_MAM01798e" name="ethanolamine-phosphate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C2H7NO4P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01798e">
+            <rdf:Description rdf:about="#M_MAM01798e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ethamp"/>
@@ -104838,10 +104890,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01862e" sboTerm="SBO:0000247" id="MAM01862e" name="fumarate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C4H2O4">
+      <species metaid="M_MAM01862e" sboTerm="SBO:0000247" id="M_MAM01862e" name="fumarate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C4H2O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01862e">
+            <rdf:Description rdf:about="#M_MAM01862e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/fum"/>
@@ -104857,10 +104909,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02912e" sboTerm="SBO:0000247" id="MAM02912e" name="sn-glycerol-3-PC" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H20NO6P">
+      <species metaid="M_MAM02912e" sboTerm="SBO:0000247" id="M_MAM02912e" name="sn-glycerol-3-PC" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H20NO6P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02912e">
+            <rdf:Description rdf:about="#M_MAM02912e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/g3pc"/>
@@ -104877,10 +104929,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02183e" sboTerm="SBO:0000247" id="MAM02183e" name="isocitrate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C6H5O7">
+      <species metaid="M_MAM02183e" sboTerm="SBO:0000247" id="M_MAM02183e" name="isocitrate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C6H5O7">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02183e">
+            <rdf:Description rdf:about="#M_MAM02183e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/icit"/>
@@ -104897,10 +104949,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02322e" sboTerm="SBO:0000247" id="MAM02322e" name="L-2-aminoadipate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H10NO4">
+      <species metaid="M_MAM02322e" sboTerm="SBO:0000247" id="M_MAM02322e" name="L-2-aminoadipate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H10NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02322e">
+            <rdf:Description rdf:about="#M_MAM02322e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/L2aadp"/>
@@ -104916,10 +104968,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03148e" sboTerm="SBO:0000247" id="MAM03148e" name="xanthine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H4N4O2">
+      <species metaid="M_MAM03148e" sboTerm="SBO:0000247" id="M_MAM03148e" name="xanthine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H4N4O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03148e">
+            <rdf:Description rdf:about="#M_MAM03148e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/xan"/>
@@ -104936,10 +104988,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03150e" sboTerm="SBO:0000247" id="MAM03150e" name="xanthosine-5-phosphate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C10H11N4O9P">
+      <species metaid="M_MAM03150e" sboTerm="SBO:0000247" id="M_MAM03150e" name="xanthosine-5-phosphate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C10H11N4O9P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03150e">
+            <rdf:Description rdf:about="#M_MAM03150e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/xmp"/>
@@ -104954,10 +105006,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03149e" sboTerm="SBO:0000247" id="MAM03149e" name="xanthosine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H12N4O6">
+      <species metaid="M_MAM03149e" sboTerm="SBO:0000247" id="M_MAM03149e" name="xanthosine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H12N4O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03149e">
+            <rdf:Description rdf:about="#M_MAM03149e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/xtsn"/>
@@ -104974,10 +105026,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00913e" sboTerm="SBO:0000247" id="MAM00913e" name="3-phospho-D-glycerate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C3H4O7P">
+      <species metaid="M_MAM00913e" sboTerm="SBO:0000247" id="M_MAM00913e" name="3-phospho-D-glycerate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C3H4O7P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00913e">
+            <rdf:Description rdf:about="#M_MAM00913e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/3pg"/>
@@ -104992,10 +105044,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03109e" sboTerm="SBO:0000247" id="MAM03109e" name="UDP-glucuronate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C15H19N2O18P2">
+      <species metaid="M_MAM03109e" sboTerm="SBO:0000247" id="M_MAM03109e" name="UDP-glucuronate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C15H19N2O18P2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03109e">
+            <rdf:Description rdf:about="#M_MAM03109e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/udpglcur"/>
@@ -105011,10 +105063,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02914e" sboTerm="SBO:0000247" id="MAM02914e" name="sn-glycerol-3-phosphate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C3H7O6P">
+      <species metaid="M_MAM02914e" sboTerm="SBO:0000247" id="M_MAM02914e" name="sn-glycerol-3-phosphate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C3H7O6P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02914e">
+            <rdf:Description rdf:about="#M_MAM02914e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/glyc3p"/>
@@ -105029,10 +105081,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02585e" sboTerm="SBO:0000247" id="MAM02585e" name="nicotinate ribonucleotide" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C11H12NO9P">
+      <species metaid="M_MAM02585e" sboTerm="SBO:0000247" id="M_MAM02585e" name="nicotinate ribonucleotide" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C11H12NO9P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02585e">
+            <rdf:Description rdf:about="#M_MAM02585e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/nicrnt"/>
@@ -105047,10 +105099,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02660e" sboTerm="SBO:0000247" id="MAM02660e" name="orotidine-5-phosphate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C10H10N2O11P">
+      <species metaid="M_MAM02660e" sboTerm="SBO:0000247" id="M_MAM02660e" name="orotidine-5-phosphate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C10H10N2O11P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02660e">
+            <rdf:Description rdf:about="#M_MAM02660e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/orot5p"/>
@@ -105065,10 +105117,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02133e" sboTerm="SBO:0000247" id="MAM02133e" name="homocysteine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H9NO2S">
+      <species metaid="M_MAM02133e" sboTerm="SBO:0000247" id="M_MAM02133e" name="homocysteine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H9NO2S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02133e">
+            <rdf:Description rdf:about="#M_MAM02133e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hcys__L"/>
@@ -105085,10 +105137,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02832e" sboTerm="SBO:0000247" id="MAM02832e" name="retinal" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H28O">
+      <species metaid="M_MAM02832e" sboTerm="SBO:0000247" id="M_MAM02832e" name="retinal" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H28O">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02832e">
+            <rdf:Description rdf:about="#M_MAM02832e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/retinal"/>
@@ -105106,10 +105158,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01366e" sboTerm="SBO:0000247" id="MAM01366e" name="argininosuccinate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H17N4O6">
+      <species metaid="M_MAM01366e" sboTerm="SBO:0000247" id="M_MAM01366e" name="argininosuccinate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H17N4O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01366e">
+            <rdf:Description rdf:about="#M_MAM01366e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/argsuc"/>
@@ -105125,10 +105177,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02634e" sboTerm="SBO:0000247" id="MAM02634e" name="O-acetylcarnitine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H17NO4">
+      <species metaid="M_MAM02634e" sboTerm="SBO:0000247" id="M_MAM02634e" name="O-acetylcarnitine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H17NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02634e">
+            <rdf:Description rdf:about="#M_MAM02634e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/acrn"/>
@@ -105145,10 +105197,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02657e" sboTerm="SBO:0000247" id="MAM02657e" name="O-propanoylcarnitine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H19NO4">
+      <species metaid="M_MAM02657e" sboTerm="SBO:0000247" id="M_MAM02657e" name="O-propanoylcarnitine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H19NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02657e">
+            <rdf:Description rdf:about="#M_MAM02657e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pcrn"/>
@@ -105167,10 +105219,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00105e" sboTerm="SBO:0000247" id="MAM00105e" name="(6Z,9Z)-octadecadienoylcarnitine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H45NO4">
+      <species metaid="M_MAM00105e" sboTerm="SBO:0000247" id="M_MAM00105e" name="(6Z,9Z)-octadecadienoylcarnitine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H45NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00105e">
+            <rdf:Description rdf:about="#M_MAM00105e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/lneldccrn"/>
@@ -105184,10 +105236,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02639e" sboTerm="SBO:0000247" id="MAM02639e" name="octadecenoylcarnitine(5)" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H47NO4">
+      <species metaid="M_MAM02639e" sboTerm="SBO:0000247" id="M_MAM02639e" name="octadecenoylcarnitine(5)" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H47NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02639e">
+            <rdf:Description rdf:about="#M_MAM02639e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/odecrn"/>
@@ -105202,10 +105254,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02940e" sboTerm="SBO:0000247" id="MAM02940e" name="stearoylcarnitine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H49NO4">
+      <species metaid="M_MAM02940e" sboTerm="SBO:0000247" id="M_MAM02940e" name="stearoylcarnitine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H49NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02940e">
+            <rdf:Description rdf:about="#M_MAM02940e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/stcrn"/>
@@ -105221,10 +105273,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02411e" sboTerm="SBO:0000247" id="MAM02411e" name="L-palmitoylcarnitine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H45NO4">
+      <species metaid="M_MAM02411e" sboTerm="SBO:0000247" id="M_MAM02411e" name="L-palmitoylcarnitine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H45NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02411e">
+            <rdf:Description rdf:about="#M_MAM02411e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pmtcrn"/>
@@ -105243,10 +105295,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02676e" sboTerm="SBO:0000247" id="MAM02676e" name="palmitoleoyl-carnitine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H43NO4">
+      <species metaid="M_MAM02676e" sboTerm="SBO:0000247" id="M_MAM02676e" name="palmitoleoyl-carnitine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H43NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02676e">
+            <rdf:Description rdf:about="#M_MAM02676e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hdcecrn"/>
@@ -105260,10 +105312,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01620e" sboTerm="SBO:0000247" id="MAM01620e" name="creatine-phosphate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C4H8N3O5P">
+      <species metaid="M_MAM01620e" sboTerm="SBO:0000247" id="M_MAM01620e" name="creatine-phosphate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C4H8N3O5P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01620e">
+            <rdf:Description rdf:about="#M_MAM01620e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pcreat"/>
@@ -105280,10 +105332,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01580e" sboTerm="SBO:0000247" id="MAM01580e" name="cis-aconitate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C6H3O6">
+      <species metaid="M_MAM01580e" sboTerm="SBO:0000247" id="M_MAM01580e" name="cis-aconitate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C6H3O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01580e">
+            <rdf:Description rdf:about="#M_MAM01580e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:32805"/>
@@ -105298,10 +105350,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01372e" sboTerm="SBO:0000247" id="MAM01372e" name="azelaic acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C9H14O4">
+      <species metaid="M_MAM01372e" sboTerm="SBO:0000247" id="M_MAM01372e" name="azelaic acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C9H14O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01372e">
+            <rdf:Description rdf:about="#M_MAM01372e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:48131"/>
@@ -105317,10 +105369,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02123e" sboTerm="SBO:0000247" id="MAM02123e" name="hippurate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C9H8NO3">
+      <species metaid="M_MAM02123e" sboTerm="SBO:0000247" id="M_MAM02123e" name="hippurate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C9H8NO3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02123e">
+            <rdf:Description rdf:about="#M_MAM02123e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:18089"/>
@@ -105335,10 +105387,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03419x" sboTerm="SBO:0000247" id="MAM03419x" name="Lysophosphatidic Acid" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C3H6O5PRCO2">
+      <species metaid="M_MAM03419x" sboTerm="SBO:0000247" id="M_MAM03419x" name="Lysophosphatidic Acid" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C3H6O5PRCO2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03419x">
+            <rdf:Description rdf:about="#M_MAM03419x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM163842"/>
@@ -105349,10 +105401,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM01892c" sboTerm="SBO:0000247" id="MAM01892c" name="15-Keto-Prostaglandin F2A" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O5">
+      <species metaid="M_MAM01892c" sboTerm="SBO:0000247" id="M_MAM01892c" name="15-Keto-Prostaglandin F2A" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01892c">
+            <rdf:Description rdf:about="#M_MAM01892c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/15kprostgf2"/>
@@ -105363,10 +105415,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03410c" sboTerm="SBO:0000247" id="MAM03410c" name="2-Hydroxyadipic Acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H8O5">
+      <species metaid="M_MAM03410c" sboTerm="SBO:0000247" id="M_MAM03410c" name="2-Hydroxyadipic Acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H8O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03410c">
+            <rdf:Description rdf:about="#M_MAM03410c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/adpoh"/>
@@ -105377,10 +105429,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03882c" sboTerm="SBO:0000247" id="MAM03882c" name="Phenyllactate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C9H9O3">
+      <species metaid="M_MAM03882c" sboTerm="SBO:0000247" id="M_MAM03882c" name="Phenyllactate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C9H9O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03882c">
+            <rdf:Description rdf:about="#M_MAM03882c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/phlac"/>
@@ -105391,10 +105443,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03433c" sboTerm="SBO:0000247" id="MAM03433c" name="19-Hydroxyandrost-4-Ene-3,17-Dione" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H26O3">
+      <species metaid="M_MAM03433c" sboTerm="SBO:0000247" id="M_MAM03433c" name="19-Hydroxyandrost-4-Ene-3,17-Dione" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H26O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03433c">
+            <rdf:Description rdf:about="#M_MAM03433c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/and19one"/>
@@ -105406,10 +105458,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM04040c" sboTerm="SBO:0000247" id="MAM04040c" name="Tetradecenoyl Coenzyme A (N-C14:1)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C35H56N7O17P3S">
+      <species metaid="M_MAM04040c" sboTerm="SBO:0000247" id="M_MAM04040c" name="Tetradecenoyl Coenzyme A (N-C14:1)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C35H56N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM04040c">
+            <rdf:Description rdf:about="#M_MAM04040c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ttdceacoa"/>
@@ -105420,10 +105472,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03247c" sboTerm="SBO:0000247" id="MAM03247c" name="3-Methylhistidine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H11N3O2">
+      <species metaid="M_MAM03247c" sboTerm="SBO:0000247" id="M_MAM03247c" name="3-Methylhistidine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H11N3O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03247c">
+            <rdf:Description rdf:about="#M_MAM03247c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/3mhis"/>
@@ -105435,10 +105487,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03681c" sboTerm="SBO:0000247" id="MAM03681c" name="Homocitrulline" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H15N3O3">
+      <species metaid="M_MAM03681c" sboTerm="SBO:0000247" id="M_MAM03681c" name="Homocitrulline" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H15N3O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03681c">
+            <rdf:Description rdf:about="#M_MAM03681c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hmcr"/>
@@ -105450,10 +105502,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03862c" sboTerm="SBO:0000247" id="MAM03862c" name="Phenylacetylglycine_phacgly" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H10NO3">
+      <species metaid="M_MAM03862c" sboTerm="SBO:0000247" id="M_MAM03862c" name="Phenylacetylglycine_phacgly" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H10NO3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03862c">
+            <rdf:Description rdf:about="#M_MAM03862c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/phacgly"/>
@@ -105464,10 +105516,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03815e" sboTerm="SBO:0000247" id="MAM03815e" name="1-Myristoylglycerophosphocholine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C22H47NO7P">
+      <species metaid="M_MAM03815e" sboTerm="SBO:0000247" id="M_MAM03815e" name="1-Myristoylglycerophosphocholine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C22H47NO7P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03815e">
+            <rdf:Description rdf:about="#M_MAM03815e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pcholmyr_hs"/>
@@ -105481,10 +105533,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03832e" sboTerm="SBO:0000247" id="MAM03832e" name="1-Oleoylglycerophosphocholine (Delta 9)" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C26H53NO7P">
+      <species metaid="M_MAM03832e" sboTerm="SBO:0000247" id="M_MAM03832e" name="1-Oleoylglycerophosphocholine (Delta 9)" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C26H53NO7P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03832e">
+            <rdf:Description rdf:about="#M_MAM03832e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pcholole_hs"/>
@@ -105498,10 +105550,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03859e" sboTerm="SBO:0000247" id="MAM03859e" name="1-Oleoylglycerophosphoethanolamine (Delta 9)" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H46NO7P">
+      <species metaid="M_MAM03859e" sboTerm="SBO:0000247" id="M_MAM03859e" name="1-Oleoylglycerophosphoethanolamine (Delta 9)" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H46NO7P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03859e">
+            <rdf:Description rdf:about="#M_MAM03859e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/peole_hs"/>
@@ -105513,10 +105565,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03834e" sboTerm="SBO:0000247" id="MAM03834e" name="1-Palmitoleoylglycerophosphocholine (Delta 9)" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C24H49NO7P">
+      <species metaid="M_MAM03834e" sboTerm="SBO:0000247" id="M_MAM03834e" name="1-Palmitoleoylglycerophosphocholine (Delta 9)" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C24H49NO7P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03834e">
+            <rdf:Description rdf:about="#M_MAM03834e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pcholpalme_hs"/>
@@ -105527,10 +105579,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03833e" sboTerm="SBO:0000247" id="MAM03833e" name="1-Palmitoylglycerophosphocholine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C24H51NO7P">
+      <species metaid="M_MAM03833e" sboTerm="SBO:0000247" id="M_MAM03833e" name="1-Palmitoylglycerophosphocholine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C24H51NO7P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03833e">
+            <rdf:Description rdf:about="#M_MAM03833e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pcholpalm_hs"/>
@@ -105541,10 +105593,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03860e" sboTerm="SBO:0000247" id="MAM03860e" name="1-Palmitoylglycerophosphoethanolamine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H44NO7P">
+      <species metaid="M_MAM03860e" sboTerm="SBO:0000247" id="M_MAM03860e" name="1-Palmitoylglycerophosphoethanolamine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H44NO7P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03860e">
+            <rdf:Description rdf:about="#M_MAM03860e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pepalm_hs"/>
@@ -105556,10 +105608,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02750e" sboTerm="SBO:0000247" id="MAM02750e" name="PI pool" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C11H16O13PR2">
+      <species metaid="M_MAM02750e" sboTerm="SBO:0000247" id="M_MAM02750e" name="PI pool" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C11H16O13PR2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02750e">
+            <rdf:Description rdf:about="#M_MAM02750e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pail_hs"/>
@@ -105573,10 +105625,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03803e" sboTerm="SBO:0000247" id="MAM03803e" name="1-Palmitoylglycerophosphoinositol" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C25H48O12P">
+      <species metaid="M_MAM03803e" sboTerm="SBO:0000247" id="M_MAM03803e" name="1-Palmitoylglycerophosphoinositol" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C25H48O12P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03803e">
+            <rdf:Description rdf:about="#M_MAM03803e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pailpalm_hs"/>
@@ -105587,10 +105639,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03835e" sboTerm="SBO:0000247" id="MAM03835e" name="1-Stearoylglycerophosphocholine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C26H55NO7P">
+      <species metaid="M_MAM03835e" sboTerm="SBO:0000247" id="M_MAM03835e" name="1-Stearoylglycerophosphocholine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C26H55NO7P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03835e">
+            <rdf:Description rdf:about="#M_MAM03835e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pcholste_hs"/>
@@ -105604,10 +105656,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03861e" sboTerm="SBO:0000247" id="MAM03861e" name="1-Stearoylglycerophosphoethanolamine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H48NO7P">
+      <species metaid="M_MAM03861e" sboTerm="SBO:0000247" id="M_MAM03861e" name="1-Stearoylglycerophosphoethanolamine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H48NO7P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03861e">
+            <rdf:Description rdf:about="#M_MAM03861e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/peste_hs"/>
@@ -105619,10 +105671,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03804e" sboTerm="SBO:0000247" id="MAM03804e" name="1-Stearoylglycerophosphoinositol" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C27H52O12P">
+      <species metaid="M_MAM03804e" sboTerm="SBO:0000247" id="M_MAM03804e" name="1-Stearoylglycerophosphoinositol" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C27H52O12P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03804e">
+            <rdf:Description rdf:about="#M_MAM03804e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pailste_hs"/>
@@ -105633,10 +105685,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03805e" sboTerm="SBO:0000247" id="MAM03805e" name="2-Linoleoylglycerophosphocholine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C26H51NO7P">
+      <species metaid="M_MAM03805e" sboTerm="SBO:0000247" id="M_MAM03805e" name="2-Linoleoylglycerophosphocholine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C26H51NO7P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03805e">
+            <rdf:Description rdf:about="#M_MAM03805e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pchol2linl_hs"/>
@@ -105647,10 +105699,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03847e" sboTerm="SBO:0000247" id="MAM03847e" name="2-Linoleoylglycerophosphoethanolamine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H44NO7P">
+      <species metaid="M_MAM03847e" sboTerm="SBO:0000247" id="M_MAM03847e" name="2-Linoleoylglycerophosphoethanolamine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H44NO7P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03847e">
+            <rdf:Description rdf:about="#M_MAM03847e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pe2linl_hs"/>
@@ -105662,10 +105714,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03806e" sboTerm="SBO:0000247" id="MAM03806e" name="2-Oleoylglycerophosphocholine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C26H53NO7P">
+      <species metaid="M_MAM03806e" sboTerm="SBO:0000247" id="M_MAM03806e" name="2-Oleoylglycerophosphocholine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C26H53NO7P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03806e">
+            <rdf:Description rdf:about="#M_MAM03806e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pchol2ole_hs"/>
@@ -105676,10 +105728,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03807e" sboTerm="SBO:0000247" id="MAM03807e" name="2-Palmitoylglycerophosphocholine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C24H51NO7P">
+      <species metaid="M_MAM03807e" sboTerm="SBO:0000247" id="M_MAM03807e" name="2-Palmitoylglycerophosphocholine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C24H51NO7P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03807e">
+            <rdf:Description rdf:about="#M_MAM03807e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pchol2palm_hs"/>
@@ -105690,10 +105742,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03808e" sboTerm="SBO:0000247" id="MAM03808e" name="2-Stearoylglycerophosphocholine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C26H55NO7P">
+      <species metaid="M_MAM03808e" sboTerm="SBO:0000247" id="M_MAM03808e" name="2-Stearoylglycerophosphocholine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C26H55NO7P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03808e">
+            <rdf:Description rdf:about="#M_MAM03808e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pchol2ste_hs"/>
@@ -105705,10 +105757,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM04077e" sboTerm="SBO:0000247" id="MAM04077e" name="1-Gamma-Linolenoyl-Cholesterol, Cholesterol-Ester (18:3, Delta 6, 9, 12)" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C45H74O2">
+      <species metaid="M_MAM04077e" sboTerm="SBO:0000247" id="M_MAM04077e" name="1-Gamma-Linolenoyl-Cholesterol, Cholesterol-Ester (18:3, Delta 6, 9, 12)" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C45H74O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM04077e">
+            <rdf:Description rdf:about="#M_MAM04077e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/xolest183_hs"/>
@@ -105720,10 +105772,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM04075e" sboTerm="SBO:0000247" id="MAM04075e" name="1-Vaccenoyl-Cholesterol, Cholesterol-Ester (18:1, Delta 11)" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C45H78O2">
+      <species metaid="M_MAM04075e" sboTerm="SBO:0000247" id="M_MAM04075e" name="1-Vaccenoyl-Cholesterol, Cholesterol-Ester (18:1, Delta 11)" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C45H78O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM04075e">
+            <rdf:Description rdf:about="#M_MAM04075e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/xolest181_hs"/>
@@ -105735,10 +105787,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM04079e" sboTerm="SBO:0000247" id="MAM04079e" name="1-Timnodnoyl-Cholesterol, Cholesterol-Ester (20:5, Delta 5,8,11,14,17)" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C47H74O2">
+      <species metaid="M_MAM04079e" sboTerm="SBO:0000247" id="M_MAM04079e" name="1-Timnodnoyl-Cholesterol, Cholesterol-Ester (20:5, Delta 5,8,11,14,17)" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C47H74O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM04079e">
+            <rdf:Description rdf:about="#M_MAM04079e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/xolest205_hs"/>
@@ -105750,10 +105802,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM04078e" sboTerm="SBO:0000247" id="MAM04078e" name="Cholesteryl Arachidonate, Cholesterol-Ester (20:4, Delta 5,8,11,14)" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C47H76O2">
+      <species metaid="M_MAM04078e" sboTerm="SBO:0000247" id="M_MAM04078e" name="Cholesteryl Arachidonate, Cholesterol-Ester (20:4, Delta 5,8,11,14)" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C47H76O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM04078e">
+            <rdf:Description rdf:about="#M_MAM04078e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/xolest204_hs"/>
@@ -105765,10 +105817,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM04080e" sboTerm="SBO:0000247" id="MAM04080e" name="Cholesteryl Docosahexanoate, Cholesterol-Ester (22:6, Delta 4,7,10,13,16,19)" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C49H76O2">
+      <species metaid="M_MAM04080e" sboTerm="SBO:0000247" id="M_MAM04080e" name="Cholesteryl Docosahexanoate, Cholesterol-Ester (22:6, Delta 4,7,10,13,16,19)" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C49H76O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM04080e">
+            <rdf:Description rdf:about="#M_MAM04080e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/xolest226_hs"/>
@@ -105780,10 +105832,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03816e" sboTerm="SBO:0000247" id="MAM03816e" name="1-Pentadecanoylglycerophosphocholine, Sn1-Lpc (15:0)" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H49NO7P">
+      <species metaid="M_MAM03816e" sboTerm="SBO:0000247" id="M_MAM03816e" name="1-Pentadecanoylglycerophosphocholine, Sn1-Lpc (15:0)" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H49NO7P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03816e">
+            <rdf:Description rdf:about="#M_MAM03816e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pcholn15_hs"/>
@@ -105794,10 +105846,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03809e" sboTerm="SBO:0000247" id="MAM03809e" name="1-Arachidonoyl-Glycero-3-Phosphocholine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C28H51NO7P">
+      <species metaid="M_MAM03809e" sboTerm="SBO:0000247" id="M_MAM03809e" name="1-Arachidonoyl-Glycero-3-Phosphocholine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C28H51NO7P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03809e">
+            <rdf:Description rdf:about="#M_MAM03809e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pcholar_hs"/>
@@ -105808,10 +105860,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03818e" sboTerm="SBO:0000247" id="MAM03818e" name="1-Octadeca-Trienoylglycerophosphocholine, Sn1-Lpc (18:3, Delta 9, 12, 15)" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C26H49NO7P">
+      <species metaid="M_MAM03818e" sboTerm="SBO:0000247" id="M_MAM03818e" name="1-Octadeca-Trienoylglycerophosphocholine, Sn1-Lpc (18:3, Delta 9, 12, 15)" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C26H49NO7P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03818e">
+            <rdf:Description rdf:about="#M_MAM03818e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pcholn183_hs"/>
@@ -105822,10 +105874,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03817e" sboTerm="SBO:0000247" id="MAM03817e" name="1-Octadeca-Trienoylglycerophosphocholine, Sn1-Lpc (18:3, Delta 6, 9, 12)" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C26H49NO7P">
+      <species metaid="M_MAM03817e" sboTerm="SBO:0000247" id="M_MAM03817e" name="1-Octadeca-Trienoylglycerophosphocholine, Sn1-Lpc (18:3, Delta 6, 9, 12)" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C26H49NO7P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03817e">
+            <rdf:Description rdf:about="#M_MAM03817e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pcholn1836_hs"/>
@@ -105836,10 +105888,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03819e" sboTerm="SBO:0000247" id="MAM03819e" name="1-Nonadecanoylglycerophosphocholine, Sn1-Lpc (19:0)" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H57NO7P">
+      <species metaid="M_MAM03819e" sboTerm="SBO:0000247" id="M_MAM03819e" name="1-Nonadecanoylglycerophosphocholine, Sn1-Lpc (19:0)" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H57NO7P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03819e">
+            <rdf:Description rdf:about="#M_MAM03819e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pcholn19_hs"/>
@@ -105850,10 +105902,10 @@
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         </annotation>
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-      <species metaid="MAM03820e" sboTerm="SBO:0000247" id="MAM03820e" name="1-Eicosenoylglycerophosphocholine (Delta 11) ,Sn1-Lpc (20:1)" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C28H57NO7P">
+      <species metaid="M_MAM03820e" sboTerm="SBO:0000247" id="M_MAM03820e" name="1-Eicosenoylglycerophosphocholine (Delta 11) ,Sn1-Lpc (20:1)" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C28H57NO7P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03820e">
+            <rdf:Description rdf:about="#M_MAM03820e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pcholn201_hs"/>
@@ -105864,10 +105916,10 @@
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-      <species metaid="MAM03822e" sboTerm="SBO:0000247" id="MAM03822e" name="1-Eicosatetraenoylglycerophosphocholine (Delta 8, 11, 14, 17), Sn1-Lpc (20:4)" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C28H51NO7P">
+      <species metaid="M_MAM03822e" sboTerm="SBO:0000247" id="M_MAM03822e" name="1-Eicosatetraenoylglycerophosphocholine (Delta 8, 11, 14, 17), Sn1-Lpc (20:4)" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C28H51NO7P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03822e">
+            <rdf:Description rdf:about="#M_MAM03822e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pcholn204_hs"/>
@@ -105881,10 +105933,10 @@
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+      <species metaid="M_MAM03823e" sboTerm="SBO:0000247" id="M_MAM03823e" name="1-Eicosapentenoylglycerophosphocholine (Delta 5, 8, 11, 14, 17), Sn1-Lpc (20:5)" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C28H49NO7P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03823e">
+            <rdf:Description rdf:about="#M_MAM03823e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pcholn205_hs"/>
@@ -105895,10 +105947,10 @@
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+      <species metaid="M_MAM03824e" sboTerm="SBO:0000247" id="M_MAM03824e" name="1-Docosatetraenoylglycerophosphocholine (Delta 7, 10, 13, 16), Sn1-Lpc (22:4)" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C30H55NO7P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03824e">
+            <rdf:Description rdf:about="#M_MAM03824e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pcholn224_hs"/>
@@ -105909,10 +105961,10 @@
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+      <species metaid="M_MAM03826e" sboTerm="SBO:0000247" id="M_MAM03826e" name="1-Docosapentenoylglycerophosphocholine (Delta 7, 10, 13, 16, 19), Sn1-Lpc (22:5)-W3" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C30H53NO7P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03826e">
+            <rdf:Description rdf:about="#M_MAM03826e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pcholn225_hs"/>
@@ -105923,10 +105975,10 @@
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-      <species metaid="MAM03825e" sboTerm="SBO:0000247" id="MAM03825e" name="1-Docosapentenoylglycerophosphocholine (Delta 4, 7, 10, 13, 16), Sn1-Lpc (22:5)-W6" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C30H53NO7P">
+      <species metaid="M_MAM03825e" sboTerm="SBO:0000247" id="M_MAM03825e" name="1-Docosapentenoylglycerophosphocholine (Delta 4, 7, 10, 13, 16), Sn1-Lpc (22:5)-W6" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C30H53NO7P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03825e">
+            <rdf:Description rdf:about="#M_MAM03825e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pcholn2254_hs"/>
@@ -105937,10 +105989,10 @@
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-      <species metaid="MAM03827e" sboTerm="SBO:0000247" id="MAM03827e" name="1-Docosahexenoylglycerophosphocholine (Delta 4, 7, 10, 13, 16, 19), Sn1-Lpc (22:6)" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C30H51NO7P">
+      <species metaid="M_MAM03827e" sboTerm="SBO:0000247" id="M_MAM03827e" name="1-Docosahexenoylglycerophosphocholine (Delta 4, 7, 10, 13, 16, 19), Sn1-Lpc (22:6)" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C30H51NO7P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03827e">
+            <rdf:Description rdf:about="#M_MAM03827e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pcholn226_hs"/>
@@ -105951,10 +106003,10 @@
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-      <species metaid="MAM03848e" sboTerm="SBO:0000247" id="MAM03848e" name="1-Arachidonoyl-Sn-Glycero-3-Phosphoethanolamine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H44NO7P">
+      <species metaid="M_MAM03848e" sboTerm="SBO:0000247" id="M_MAM03848e" name="1-Arachidonoyl-Sn-Glycero-3-Phosphoethanolamine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H44NO7P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03848e">
+            <rdf:Description rdf:about="#M_MAM03848e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pear_hs"/>
@@ -105966,10 +106018,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM03844e" sboTerm="SBO:0000247" id="MAM03844e" name="1-Eicosatrienoylglycerophosphoethanolamine (Delta 11, 14, 17), Lpe (20:3)" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H46NO7P">
+      <species metaid="M_MAM03844e" sboTerm="SBO:0000247" id="M_MAM03844e" name="1-Eicosatrienoylglycerophosphoethanolamine (Delta 11, 14, 17), Lpe (20:3)" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H46NO7P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03844e">
+            <rdf:Description rdf:about="#M_MAM03844e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pe203_hs"/>
@@ -105981,10 +106033,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM03846e" sboTerm="SBO:0000247" id="MAM03846e" name="1-Docosahexenoylglyceroethanolamine (Delta 4, 7, 10, 13, 16, 19), Lpe (22:6)" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H46NO7P">
+      <species metaid="M_MAM03846e" sboTerm="SBO:0000247" id="M_MAM03846e" name="1-Docosahexenoylglyceroethanolamine (Delta 4, 7, 10, 13, 16, 19), Lpe (22:6)" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H46NO7P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03846e">
+            <rdf:Description rdf:about="#M_MAM03846e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pe226_hs"/>
@@ -105995,10 +106047,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM03845e" sboTerm="SBO:0000247" id="MAM03845e" name="1-Docosatetraenoyglycerophosphoethanolamine (22:4, Delta 7, 10, 13, 16)" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H48NO7P">
+      <species metaid="M_MAM03845e" sboTerm="SBO:0000247" id="M_MAM03845e" name="1-Docosatetraenoyglycerophosphoethanolamine (22:4, Delta 7, 10, 13, 16)" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H48NO7P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03845e">
+            <rdf:Description rdf:about="#M_MAM03845e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pe224_hs"/>
@@ -106010,10 +106062,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM03855e" sboTerm="SBO:0000247" id="MAM03855e" name="1-Dihomo-Linolenoylglycerophosphoethanolamine (20:3, Delta 8, 11, 14)" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H46NO7P">
+      <species metaid="M_MAM03855e" sboTerm="SBO:0000247" id="M_MAM03855e" name="1-Dihomo-Linolenoylglycerophosphoethanolamine (20:3, Delta 8, 11, 14)" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H46NO7P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03855e">
+            <rdf:Description rdf:about="#M_MAM03855e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pedh203_hs"/>
@@ -106025,10 +106077,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM03838e" sboTerm="SBO:0000247" id="MAM03838e" name="1-Didecanoylglycerophosphoethanolamine (C12:0 Pe)" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C17H36NO7P">
+      <species metaid="M_MAM03838e" sboTerm="SBO:0000247" id="M_MAM03838e" name="1-Didecanoylglycerophosphoethanolamine (C12:0 Pe)" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C17H36NO7P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03838e">
+            <rdf:Description rdf:about="#M_MAM03838e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pe12_hs"/>
@@ -106040,10 +106092,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM03840e" sboTerm="SBO:0000247" id="MAM03840e" name="1-Myristoylglycerophosphoethanolamine (C14:0 Pe)" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H40NO7P">
+      <species metaid="M_MAM03840e" sboTerm="SBO:0000247" id="M_MAM03840e" name="1-Myristoylglycerophosphoethanolamine (C14:0 Pe)" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H40NO7P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03840e">
+            <rdf:Description rdf:about="#M_MAM03840e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pe14_hs"/>
@@ -106055,10 +106107,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03842e" sboTerm="SBO:0000247" id="MAM03842e" name="1-Hexadecenoylglycerophosphoethanolamine (C16:1 Pe, Delta 9)" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H42NO7P">
+      <species metaid="M_MAM03842e" sboTerm="SBO:0000247" id="M_MAM03842e" name="1-Hexadecenoylglycerophosphoethanolamine (C16:1 Pe, Delta 9)" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H42NO7P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03842e">
+            <rdf:Description rdf:about="#M_MAM03842e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pe161_hs"/>
@@ -106070,10 +106122,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03839e" sboTerm="SBO:0000247" id="MAM03839e" name="1-Tridecanoylglycerophosphoethanolamine (C13:0 Pe)" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H38NO7P">
+      <species metaid="M_MAM03839e" sboTerm="SBO:0000247" id="M_MAM03839e" name="1-Tridecanoylglycerophosphoethanolamine (C13:0 Pe)" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H38NO7P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03839e">
+            <rdf:Description rdf:about="#M_MAM03839e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pe13_hs"/>
@@ -106085,10 +106137,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03841e" sboTerm="SBO:0000247" id="MAM03841e" name="1-Pentadecanoylglycerophosphoethanolamine (C15:0 Pe)" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H42NO7P">
+      <species metaid="M_MAM03841e" sboTerm="SBO:0000247" id="M_MAM03841e" name="1-Pentadecanoylglycerophosphoethanolamine (C15:0 Pe)" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H42NO7P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03841e">
+            <rdf:Description rdf:about="#M_MAM03841e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pe15_hs"/>
@@ -106100,10 +106152,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03843e" sboTerm="SBO:0000247" id="MAM03843e" name="1-Heptadecanoylglycerophosphoethanolamine (C17:0 Pe)" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C22H46NO7P">
+      <species metaid="M_MAM03843e" sboTerm="SBO:0000247" id="M_MAM03843e" name="1-Heptadecanoylglycerophosphoethanolamine (C17:0 Pe)" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C22H46NO7P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03843e">
+            <rdf:Description rdf:about="#M_MAM03843e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pe17_hs"/>
@@ -106115,10 +106167,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03821e" sboTerm="SBO:0000247" id="MAM03821e" name="1-Dihomo-Linolenoylglycerophosphocholine (20:3, Delta 8, 11, 14), Lysopc A C20:3" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C28H53NO7P">
+      <species metaid="M_MAM03821e" sboTerm="SBO:0000247" id="M_MAM03821e" name="1-Dihomo-Linolenoylglycerophosphocholine (20:3, Delta 8, 11, 14), Lysopc A C20:3" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C28H53NO7P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03821e">
+            <rdf:Description rdf:about="#M_MAM03821e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pcholn203_hs"/>
@@ -106129,10 +106181,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03802e" sboTerm="SBO:0000247" id="MAM03802e" name="1-Arachidonoylglycerophosphoinositol" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C29H48O12P">
+      <species metaid="M_MAM03802e" sboTerm="SBO:0000247" id="M_MAM03802e" name="1-Arachidonoylglycerophosphoinositol" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C29H48O12P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03802e">
+            <rdf:Description rdf:about="#M_MAM03802e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pailar_hs"/>
@@ -106143,10 +106195,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03828e" sboTerm="SBO:0000247" id="MAM03828e" name="1-Lignocericylglycerophosphocholine (24:0), Lysopc A C24" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C32H67NO7P">
+      <species metaid="M_MAM03828e" sboTerm="SBO:0000247" id="M_MAM03828e" name="1-Lignocericylglycerophosphocholine (24:0), Lysopc A C24" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C32H67NO7P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03828e">
+            <rdf:Description rdf:about="#M_MAM03828e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pcholn24_hs"/>
@@ -106160,10 +106212,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03829e" sboTerm="SBO:0000247" id="MAM03829e" name="Lysopc A C26:1 (Delta 5)" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C34H69NO7P">
+      <species metaid="M_MAM03829e" sboTerm="SBO:0000247" id="M_MAM03829e" name="Lysopc A C26:1 (Delta 5)" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C34H69NO7P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03829e">
+            <rdf:Description rdf:about="#M_MAM03829e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pcholn261_hs"/>
@@ -106174,10 +106226,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03830e" sboTerm="SBO:0000247" id="MAM03830e" name="Lysopc A C28:1 (Delta 5)" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C36H73NO7P">
+      <species metaid="M_MAM03830e" sboTerm="SBO:0000247" id="M_MAM03830e" name="Lysopc A C28:1 (Delta 5)" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C36H73NO7P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03830e">
+            <rdf:Description rdf:about="#M_MAM03830e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pcholn281_hs"/>
@@ -106188,10 +106240,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03831e" sboTerm="SBO:0000247" id="MAM03831e" name="Lysopc A C28:0" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C36H75NO7P">
+      <species metaid="M_MAM03831e" sboTerm="SBO:0000247" id="M_MAM03831e" name="Lysopc A C28:0" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C36H75NO7P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03831e">
+            <rdf:Description rdf:about="#M_MAM03831e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pcholn28_hs"/>
@@ -106202,10 +106254,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03810e" sboTerm="SBO:0000247" id="MAM03810e" name="1-Docosahexaenoylglycerophosphocholine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C34H59NO7P">
+      <species metaid="M_MAM03810e" sboTerm="SBO:0000247" id="M_MAM03810e" name="1-Docosahexaenoylglycerophosphocholine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C34H59NO7P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03810e">
+            <rdf:Description rdf:about="#M_MAM03810e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pcholdoc_hs"/>
@@ -106216,10 +106268,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03811e" sboTerm="SBO:0000247" id="MAM03811e" name="1-Eicosadienoylglycerophosphocholine (Delta 11,14)" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C28H55NO7P">
+      <species metaid="M_MAM03811e" sboTerm="SBO:0000247" id="M_MAM03811e" name="1-Eicosadienoylglycerophosphocholine (Delta 11,14)" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C28H55NO7P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03811e">
+            <rdf:Description rdf:about="#M_MAM03811e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pcholeic_hs"/>
@@ -106230,10 +106282,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03812e" sboTerm="SBO:0000247" id="MAM03812e" name="1-Eicosatrienoylglycerophosphocholine (Delta 11, 14, 17)" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C28H53NO7P">
+      <species metaid="M_MAM03812e" sboTerm="SBO:0000247" id="M_MAM03812e" name="1-Eicosatrienoylglycerophosphocholine (Delta 11, 14, 17)" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C28H53NO7P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03812e">
+            <rdf:Description rdf:about="#M_MAM03812e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pcholet_hs"/>
@@ -106244,10 +106296,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03813e" sboTerm="SBO:0000247" id="MAM03813e" name="1-Heptadecanoylglycerophosphocholine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H53NO7P">
+      <species metaid="M_MAM03813e" sboTerm="SBO:0000247" id="M_MAM03813e" name="1-Heptadecanoylglycerophosphocholine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H53NO7P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03813e">
+            <rdf:Description rdf:about="#M_MAM03813e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pcholhep_hs"/>
@@ -106262,10 +106314,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03814e" sboTerm="SBO:0000247" id="MAM03814e" name="1-Linoleoylglycerophosphocholine (Delta 9,12)" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C26H51NO7P">
+      <species metaid="M_MAM03814e" sboTerm="SBO:0000247" id="M_MAM03814e" name="1-Linoleoylglycerophosphocholine (Delta 9,12)" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C26H51NO7P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03814e">
+            <rdf:Description rdf:about="#M_MAM03814e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pchollinl_hs"/>
@@ -106276,10 +106328,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03856e" sboTerm="SBO:0000247" id="MAM03856e" name="1-Linoleoylglycerophosphoethanolamine (Delta 9,12)" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H44NO7P">
+      <species metaid="M_MAM03856e" sboTerm="SBO:0000247" id="M_MAM03856e" name="1-Linoleoylglycerophosphoethanolamine (Delta 9,12)" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H44NO7P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03856e">
+            <rdf:Description rdf:about="#M_MAM03856e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pelinl_hs"/>
@@ -106291,10 +106343,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03937c" sboTerm="SBO:0000247" id="MAM03937c" name="Sm (D18:1/14:0), Sphingomyelin" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C37H76N2O6P">
+      <species metaid="M_MAM03937c" sboTerm="SBO:0000247" id="M_MAM03937c" name="Sm (D18:1/14:0), Sphingomyelin" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C37H76N2O6P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03937c">
+            <rdf:Description rdf:about="#M_MAM03937c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/sphmyln18114_hs"/>
@@ -106305,10 +106357,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03946c" sboTerm="SBO:0000247" id="MAM03946c" name="Sm (D18:1/21:0), Sphingomyelin" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C44H90N2O6P">
+      <species metaid="M_MAM03946c" sboTerm="SBO:0000247" id="M_MAM03946c" name="Sm (D18:1/21:0), Sphingomyelin" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C44H90N2O6P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03946c">
+            <rdf:Description rdf:about="#M_MAM03946c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/sphmyln18121_hs"/>
@@ -106319,10 +106371,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM03947c" sboTerm="SBO:0000247" id="MAM03947c" name="Sm (D18:1/22:1), Sphingomyelin" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C45H90N2O6P">
+      <species metaid="M_MAM03947c" sboTerm="SBO:0000247" id="M_MAM03947c" name="Sm (D18:1/22:1), Sphingomyelin" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C45H90N2O6P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03947c">
+            <rdf:Description rdf:about="#M_MAM03947c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/sphmyln181221_hs"/>
@@ -106333,10 +106385,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03948c" sboTerm="SBO:0000247" id="MAM03948c" name="Sm (D18:1/22:0), Sphingomyelin" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C45H92N2O6P">
+      <species metaid="M_MAM03948c" sboTerm="SBO:0000247" id="M_MAM03948c" name="Sm (D18:1/22:0), Sphingomyelin" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C45H92N2O6P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03948c">
+            <rdf:Description rdf:about="#M_MAM03948c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/sphmyln18122_hs"/>
@@ -106347,10 +106399,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03949c" sboTerm="SBO:0000247" id="MAM03949c" name="Sm (D18:1/23:0), Sphingomyelin" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C46H94N2O6P">
+      <species metaid="M_MAM03949c" sboTerm="SBO:0000247" id="M_MAM03949c" name="Sm (D18:1/23:0), Sphingomyelin" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C46H94N2O6P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03949c">
+            <rdf:Description rdf:about="#M_MAM03949c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/sphmyln18123_hs"/>
@@ -106361,10 +106413,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03936c" sboTerm="SBO:0000247" id="MAM03936c" name="Sm (D18:0/24:1), Sphingomyelin" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C47H96N2O6P">
+      <species metaid="M_MAM03936c" sboTerm="SBO:0000247" id="M_MAM03936c" name="Sm (D18:0/24:1), Sphingomyelin" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C47H96N2O6P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03936c">
+            <rdf:Description rdf:about="#M_MAM03936c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/sphmyln180241_hs"/>
@@ -106375,10 +106427,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03950c" sboTerm="SBO:0000247" id="MAM03950c" name="Sm (D18:0/24:0), Sphingomyelin" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C47H98N2O6P">
+      <species metaid="M_MAM03950c" sboTerm="SBO:0000247" id="M_MAM03950c" name="Sm (D18:0/24:0), Sphingomyelin" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C47H98N2O6P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03950c">
+            <rdf:Description rdf:about="#M_MAM03950c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/sphmyln1824_hs"/>
@@ -106389,10 +106441,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03951c" sboTerm="SBO:0000247" id="MAM03951c" name="Sm (D18:0/25:0), Sphingomyelin" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C48H100N2O6P">
+      <species metaid="M_MAM03951c" sboTerm="SBO:0000247" id="M_MAM03951c" name="Sm (D18:0/25:0), Sphingomyelin" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C48H100N2O6P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03951c">
+            <rdf:Description rdf:about="#M_MAM03951c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/sphmyln1825_hs"/>
@@ -106403,10 +106455,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03938c" sboTerm="SBO:0000247" id="MAM03938c" name="Sm (D18:1/15:0), Sphingomyelin" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C38H78N2O6P">
+      <species metaid="M_MAM03938c" sboTerm="SBO:0000247" id="M_MAM03938c" name="Sm (D18:1/15:0), Sphingomyelin" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C38H78N2O6P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03938c">
+            <rdf:Description rdf:about="#M_MAM03938c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/sphmyln18115_hs"/>
@@ -106417,10 +106469,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03939c" sboTerm="SBO:0000247" id="MAM03939c" name="Sm (D18:1/16:1), Sphingomyelin" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C39H78N2O6P">
+      <species metaid="M_MAM03939c" sboTerm="SBO:0000247" id="M_MAM03939c" name="Sm (D18:1/16:1), Sphingomyelin" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C39H78N2O6P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03939c">
+            <rdf:Description rdf:about="#M_MAM03939c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/sphmyln181161_hs"/>
@@ -106431,10 +106483,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03940c" sboTerm="SBO:0000247" id="MAM03940c" name="Sm (D18:1/16:0), Sphingomyelin" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C39H80N2O6P">
+      <species metaid="M_MAM03940c" sboTerm="SBO:0000247" id="M_MAM03940c" name="Sm (D18:1/16:0), Sphingomyelin" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C39H80N2O6P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03940c">
+            <rdf:Description rdf:about="#M_MAM03940c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/sphmyln18116_hs"/>
@@ -106445,10 +106497,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03941c" sboTerm="SBO:0000247" id="MAM03941c" name="Sm (D18:1/17:0), Sphingomyelin" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C40H82N2O6P">
+      <species metaid="M_MAM03941c" sboTerm="SBO:0000247" id="M_MAM03941c" name="Sm (D18:1/17:0), Sphingomyelin" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C40H82N2O6P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03941c">
+            <rdf:Description rdf:about="#M_MAM03941c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/sphmyln18117_hs"/>
@@ -106459,10 +106511,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03943c" sboTerm="SBO:0000247" id="MAM03943c" name="Sm (D18:1/18:0), Sphingomyelin" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C41H84N2O6P">
+      <species metaid="M_MAM03943c" sboTerm="SBO:0000247" id="M_MAM03943c" name="Sm (D18:1/18:0), Sphingomyelin" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C41H84N2O6P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03943c">
+            <rdf:Description rdf:about="#M_MAM03943c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/sphmyln18118_hs"/>
@@ -106473,10 +106525,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03942c" sboTerm="SBO:0000247" id="MAM03942c" name="Sm (D18:1/18:1), Sphingomyelin" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C41H82N2O6P">
+      <species metaid="M_MAM03942c" sboTerm="SBO:0000247" id="M_MAM03942c" name="Sm (D18:1/18:1), Sphingomyelin" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C41H82N2O6P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03942c">
+            <rdf:Description rdf:about="#M_MAM03942c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/sphmyln181181_hs"/>
@@ -106487,10 +106539,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03944c" sboTerm="SBO:0000247" id="MAM03944c" name="Sm (D18:1/20:1), Sphingomyelin" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C43H86N2O6P">
+      <species metaid="M_MAM03944c" sboTerm="SBO:0000247" id="M_MAM03944c" name="Sm (D18:1/20:1), Sphingomyelin" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C43H86N2O6P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03944c">
+            <rdf:Description rdf:about="#M_MAM03944c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/sphmyln181201_hs"/>
@@ -106501,10 +106553,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03945c" sboTerm="SBO:0000247" id="MAM03945c" name="Sm (D18:1/20:0), Sphingomyelin" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C43H88N2O6P">
+      <species metaid="M_MAM03945c" sboTerm="SBO:0000247" id="M_MAM03945c" name="Sm (D18:1/20:0), Sphingomyelin" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C43H88N2O6P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03945c">
+            <rdf:Description rdf:about="#M_MAM03945c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/sphmyln18120_hs"/>
@@ -106515,10 +106567,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM04077l" sboTerm="SBO:0000247" id="MAM04077l" name="1-Gamma-Linolenoyl-Cholesterol, Cholesterol-Ester (18:3, Delta 6, 9, 12)" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C45H74O2">
+      <species metaid="M_MAM04077l" sboTerm="SBO:0000247" id="M_MAM04077l" name="1-Gamma-Linolenoyl-Cholesterol, Cholesterol-Ester (18:3, Delta 6, 9, 12)" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C45H74O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM04077l">
+            <rdf:Description rdf:about="#M_MAM04077l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/xolest183_hs"/>
@@ -106530,10 +106582,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM04076l" sboTerm="SBO:0000247" id="MAM04076l" name="1-Linoleoyl-Cholesterol, Cholesterol-Ester (18:2, Delta 9, 12)" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C45H76O2">
+      <species metaid="M_MAM04076l" sboTerm="SBO:0000247" id="M_MAM04076l" name="1-Linoleoyl-Cholesterol, Cholesterol-Ester (18:2, Delta 9, 12)" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C45H76O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM04076l">
+            <rdf:Description rdf:about="#M_MAM04076l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/xolest182_hs"/>
@@ -106545,10 +106597,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM04075l" sboTerm="SBO:0000247" id="MAM04075l" name="1-Vaccenoyl-Cholesterol, Cholesterol-Ester (18:1, Delta 11)" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C45H78O2">
+      <species metaid="M_MAM04075l" sboTerm="SBO:0000247" id="M_MAM04075l" name="1-Vaccenoyl-Cholesterol, Cholesterol-Ester (18:1, Delta 11)" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C45H78O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM04075l">
+            <rdf:Description rdf:about="#M_MAM04075l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/xolest181_hs"/>
@@ -106559,10 +106611,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM04079l" sboTerm="SBO:0000247" id="MAM04079l" name="1-Timnodnoyl-Cholesterol, Cholesterol-Ester (20:5, Delta 5,8,11,14,17)" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C47H74O2">
+      <species metaid="M_MAM04079l" sboTerm="SBO:0000247" id="M_MAM04079l" name="1-Timnodnoyl-Cholesterol, Cholesterol-Ester (20:5, Delta 5,8,11,14,17)" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C47H74O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM04079l">
+            <rdf:Description rdf:about="#M_MAM04079l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/xolest205_hs"/>
@@ -106574,10 +106626,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM04078l" sboTerm="SBO:0000247" id="MAM04078l" name="Cholesteryl Arachidonate, Cholesterol-Ester (20:4, Delta 5,8,11,14)" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C47H76O2">
+      <species metaid="M_MAM04078l" sboTerm="SBO:0000247" id="M_MAM04078l" name="Cholesteryl Arachidonate, Cholesterol-Ester (20:4, Delta 5,8,11,14)" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C47H76O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM04078l">
+            <rdf:Description rdf:about="#M_MAM04078l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/xolest204_hs"/>
@@ -106588,10 +106640,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM04080l" sboTerm="SBO:0000247" id="MAM04080l" name="Cholesteryl Docosahexanoate, Cholesterol-Ester (22:6, Delta 4,7,10,13,16,19)" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C49H76O2">
+      <species metaid="M_MAM04080l" sboTerm="SBO:0000247" id="M_MAM04080l" name="Cholesteryl Docosahexanoate, Cholesterol-Ester (22:6, Delta 4,7,10,13,16,19)" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C49H76O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM04080l">
+            <rdf:Description rdf:about="#M_MAM04080l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/xolest226_hs"/>
@@ -106603,10 +106655,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03752e" sboTerm="SBO:0000247" id="MAM03752e" name="1-Linoleoylglycerol" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H38O4">
+      <species metaid="M_MAM03752e" sboTerm="SBO:0000247" id="M_MAM03752e" name="1-Linoleoylglycerol" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H38O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03752e">
+            <rdf:Description rdf:about="#M_MAM03752e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/maglinl_hs"/>
@@ -106618,10 +106670,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03753e" sboTerm="SBO:0000247" id="MAM03753e" name="1-Oleoylglycerol" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H40O4">
+      <species metaid="M_MAM03753e" sboTerm="SBO:0000247" id="M_MAM03753e" name="1-Oleoylglycerol" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H40O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03753e">
+            <rdf:Description rdf:about="#M_MAM03753e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/magole_hs"/>
@@ -106633,10 +106685,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03754e" sboTerm="SBO:0000247" id="MAM03754e" name="1-Palmitoylglycerol" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H38O4">
+      <species metaid="M_MAM03754e" sboTerm="SBO:0000247" id="M_MAM03754e" name="1-Palmitoylglycerol" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H38O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03754e">
+            <rdf:Description rdf:about="#M_MAM03754e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/magpalm_hs"/>
@@ -106648,10 +106700,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03755e" sboTerm="SBO:0000247" id="MAM03755e" name="1-Stearoylglycerol" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H42O4">
+      <species metaid="M_MAM03755e" sboTerm="SBO:0000247" id="M_MAM03755e" name="1-Stearoylglycerol" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H42O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03755e">
+            <rdf:Description rdf:about="#M_MAM03755e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/magste_hs"/>
@@ -106663,10 +106715,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03751e" sboTerm="SBO:0000247" id="MAM03751e" name="1-Arachidonoyl Glycerol" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H38O4">
+      <species metaid="M_MAM03751e" sboTerm="SBO:0000247" id="M_MAM03751e" name="1-Arachidonoyl Glycerol" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H38O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03751e">
+            <rdf:Description rdf:about="#M_MAM03751e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/magarachi_hs"/>
@@ -106679,10 +106731,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03815c" sboTerm="SBO:0000247" id="MAM03815c" name="1-Myristoylglycerophosphocholine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C22H47NO7P">
+      <species metaid="M_MAM03815c" sboTerm="SBO:0000247" id="M_MAM03815c" name="1-Myristoylglycerophosphocholine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C22H47NO7P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03815c">
+            <rdf:Description rdf:about="#M_MAM03815c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pcholmyr_hs"/>
@@ -106696,10 +106748,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03832c" sboTerm="SBO:0000247" id="MAM03832c" name="1-Oleoylglycerophosphocholine (Delta 9)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C26H53NO7P">
+      <species metaid="M_MAM03832c" sboTerm="SBO:0000247" id="M_MAM03832c" name="1-Oleoylglycerophosphocholine (Delta 9)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C26H53NO7P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03832c">
+            <rdf:Description rdf:about="#M_MAM03832c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pcholole_hs"/>
@@ -106713,10 +106765,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03859c" sboTerm="SBO:0000247" id="MAM03859c" name="1-Oleoylglycerophosphoethanolamine (Delta 9)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H46NO7P">
+      <species metaid="M_MAM03859c" sboTerm="SBO:0000247" id="M_MAM03859c" name="1-Oleoylglycerophosphoethanolamine (Delta 9)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H46NO7P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03859c">
+            <rdf:Description rdf:about="#M_MAM03859c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/peole_hs"/>
@@ -106728,10 +106780,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03834c" sboTerm="SBO:0000247" id="MAM03834c" name="1-Palmitoleoylglycerophosphocholine (Delta 9)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C24H49NO7P">
+      <species metaid="M_MAM03834c" sboTerm="SBO:0000247" id="M_MAM03834c" name="1-Palmitoleoylglycerophosphocholine (Delta 9)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C24H49NO7P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03834c">
+            <rdf:Description rdf:about="#M_MAM03834c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pcholpalme_hs"/>
@@ -106742,10 +106794,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03833c" sboTerm="SBO:0000247" id="MAM03833c" name="1-Palmitoylglycerophosphocholine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C24H51NO7P">
+      <species metaid="M_MAM03833c" sboTerm="SBO:0000247" id="M_MAM03833c" name="1-Palmitoylglycerophosphocholine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C24H51NO7P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03833c">
+            <rdf:Description rdf:about="#M_MAM03833c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pcholpalm_hs"/>
@@ -106756,10 +106808,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03860c" sboTerm="SBO:0000247" id="MAM03860c" name="1-Palmitoylglycerophosphoethanolamine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H44NO7P">
+      <species metaid="M_MAM03860c" sboTerm="SBO:0000247" id="M_MAM03860c" name="1-Palmitoylglycerophosphoethanolamine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H44NO7P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03860c">
+            <rdf:Description rdf:about="#M_MAM03860c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pepalm_hs"/>
@@ -106771,10 +106823,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03803c" sboTerm="SBO:0000247" id="MAM03803c" name="1-Palmitoylglycerophosphoinositol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C25H48O12P">
+      <species metaid="M_MAM03803c" sboTerm="SBO:0000247" id="M_MAM03803c" name="1-Palmitoylglycerophosphoinositol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C25H48O12P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03803c">
+            <rdf:Description rdf:about="#M_MAM03803c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pailpalm_hs"/>
@@ -106785,10 +106837,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03835c" sboTerm="SBO:0000247" id="MAM03835c" name="1-Stearoylglycerophosphocholine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C26H55NO7P">
+      <species metaid="M_MAM03835c" sboTerm="SBO:0000247" id="M_MAM03835c" name="1-Stearoylglycerophosphocholine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C26H55NO7P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03835c">
+            <rdf:Description rdf:about="#M_MAM03835c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pcholste_hs"/>
@@ -106802,10 +106854,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03805c" sboTerm="SBO:0000247" id="MAM03805c" name="2-Linoleoylglycerophosphocholine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C26H51NO7P">
+      <species metaid="M_MAM03805c" sboTerm="SBO:0000247" id="M_MAM03805c" name="2-Linoleoylglycerophosphocholine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C26H51NO7P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03805c">
+            <rdf:Description rdf:about="#M_MAM03805c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pchol2linl_hs"/>
@@ -106816,10 +106868,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03847c" sboTerm="SBO:0000247" id="MAM03847c" name="2-Linoleoylglycerophosphoethanolamine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H44NO7P">
+      <species metaid="M_MAM03847c" sboTerm="SBO:0000247" id="M_MAM03847c" name="2-Linoleoylglycerophosphoethanolamine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H44NO7P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03847c">
+            <rdf:Description rdf:about="#M_MAM03847c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pe2linl_hs"/>
@@ -106831,10 +106883,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03806c" sboTerm="SBO:0000247" id="MAM03806c" name="2-Oleoylglycerophosphocholine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C26H53NO7P">
+      <species metaid="M_MAM03806c" sboTerm="SBO:0000247" id="M_MAM03806c" name="2-Oleoylglycerophosphocholine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C26H53NO7P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03806c">
+            <rdf:Description rdf:about="#M_MAM03806c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pchol2ole_hs"/>
@@ -106845,10 +106897,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03807c" sboTerm="SBO:0000247" id="MAM03807c" name="2-Palmitoylglycerophosphocholine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C24H51NO7P">
+      <species metaid="M_MAM03807c" sboTerm="SBO:0000247" id="M_MAM03807c" name="2-Palmitoylglycerophosphocholine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C24H51NO7P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03807c">
+            <rdf:Description rdf:about="#M_MAM03807c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pchol2palm_hs"/>
@@ -106859,10 +106911,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03808c" sboTerm="SBO:0000247" id="MAM03808c" name="2-Stearoylglycerophosphocholine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C26H55NO7P">
+      <species metaid="M_MAM03808c" sboTerm="SBO:0000247" id="M_MAM03808c" name="2-Stearoylglycerophosphocholine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C26H55NO7P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03808c">
+            <rdf:Description rdf:about="#M_MAM03808c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pchol2ste_hs"/>
@@ -106874,10 +106926,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03816c" sboTerm="SBO:0000247" id="MAM03816c" name="1-Pentadecanoylglycerophosphocholine, Sn1-Lpc (15:0)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H49NO7P">
+      <species metaid="M_MAM03816c" sboTerm="SBO:0000247" id="M_MAM03816c" name="1-Pentadecanoylglycerophosphocholine, Sn1-Lpc (15:0)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H49NO7P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03816c">
+            <rdf:Description rdf:about="#M_MAM03816c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pcholn15_hs"/>
@@ -106888,10 +106940,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03809c" sboTerm="SBO:0000247" id="MAM03809c" name="1-Arachidonoyl-Glycero-3-Phosphocholine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C28H51NO7P">
+      <species metaid="M_MAM03809c" sboTerm="SBO:0000247" id="M_MAM03809c" name="1-Arachidonoyl-Glycero-3-Phosphocholine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C28H51NO7P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03809c">
+            <rdf:Description rdf:about="#M_MAM03809c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pcholar_hs"/>
@@ -106902,10 +106954,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03818c" sboTerm="SBO:0000247" id="MAM03818c" name="1-Octadeca-Trienoylglycerophosphocholine, Sn1-Lpc (18:3, Delta 9, 12, 15)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C26H49NO7P">
+      <species metaid="M_MAM03818c" sboTerm="SBO:0000247" id="M_MAM03818c" name="1-Octadeca-Trienoylglycerophosphocholine, Sn1-Lpc (18:3, Delta 9, 12, 15)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C26H49NO7P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03818c">
+            <rdf:Description rdf:about="#M_MAM03818c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pcholn183_hs"/>
@@ -106916,10 +106968,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03817c" sboTerm="SBO:0000247" id="MAM03817c" name="1-Octadeca-Trienoylglycerophosphocholine, Sn1-Lpc (18:3, Delta 6, 9, 12)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C26H49NO7P">
+      <species metaid="M_MAM03817c" sboTerm="SBO:0000247" id="M_MAM03817c" name="1-Octadeca-Trienoylglycerophosphocholine, Sn1-Lpc (18:3, Delta 6, 9, 12)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C26H49NO7P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03817c">
+            <rdf:Description rdf:about="#M_MAM03817c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pcholn1836_hs"/>
@@ -106930,10 +106982,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03819c" sboTerm="SBO:0000247" id="MAM03819c" name="1-Nonadecanoylglycerophosphocholine, Sn1-Lpc (19:0)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H57NO7P">
+      <species metaid="M_MAM03819c" sboTerm="SBO:0000247" id="M_MAM03819c" name="1-Nonadecanoylglycerophosphocholine, Sn1-Lpc (19:0)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H57NO7P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03819c">
+            <rdf:Description rdf:about="#M_MAM03819c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pcholn19_hs"/>
@@ -106944,10 +106996,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03820c" sboTerm="SBO:0000247" id="MAM03820c" name="1-Eicosenoylglycerophosphocholine (Delta 11) ,Sn1-Lpc (20:1)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C28H57NO7P">
+      <species metaid="M_MAM03820c" sboTerm="SBO:0000247" id="M_MAM03820c" name="1-Eicosenoylglycerophosphocholine (Delta 11) ,Sn1-Lpc (20:1)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C28H57NO7P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03820c">
+            <rdf:Description rdf:about="#M_MAM03820c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pcholn201_hs"/>
@@ -106958,10 +107010,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03822c" sboTerm="SBO:0000247" id="MAM03822c" name="1-Eicosatetraenoylglycerophosphocholine (Delta 8, 11, 14, 17), Sn1-Lpc (20:4)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C28H51NO7P">
+      <species metaid="M_MAM03822c" sboTerm="SBO:0000247" id="M_MAM03822c" name="1-Eicosatetraenoylglycerophosphocholine (Delta 8, 11, 14, 17), Sn1-Lpc (20:4)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C28H51NO7P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03822c">
+            <rdf:Description rdf:about="#M_MAM03822c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pcholn204_hs"/>
@@ -106975,10 +107027,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03823c" sboTerm="SBO:0000247" id="MAM03823c" name="1-Eicosapentenoylglycerophosphocholine (Delta 5, 8, 11, 14, 17), Sn1-Lpc (20:5)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C28H49NO7P">
+      <species metaid="M_MAM03823c" sboTerm="SBO:0000247" id="M_MAM03823c" name="1-Eicosapentenoylglycerophosphocholine (Delta 5, 8, 11, 14, 17), Sn1-Lpc (20:5)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C28H49NO7P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03823c">
+            <rdf:Description rdf:about="#M_MAM03823c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pcholn205_hs"/>
@@ -106989,10 +107041,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03824c" sboTerm="SBO:0000247" id="MAM03824c" name="1-Docosatetraenoylglycerophosphocholine (Delta 7, 10, 13, 16), Sn1-Lpc (22:4)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C30H55NO7P">
+      <species metaid="M_MAM03824c" sboTerm="SBO:0000247" id="M_MAM03824c" name="1-Docosatetraenoylglycerophosphocholine (Delta 7, 10, 13, 16), Sn1-Lpc (22:4)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C30H55NO7P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03824c">
+            <rdf:Description rdf:about="#M_MAM03824c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pcholn224_hs"/>
@@ -107003,10 +107055,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03826c" sboTerm="SBO:0000247" id="MAM03826c" name="1-Docosapentenoylglycerophosphocholine (Delta 7, 10, 13, 16, 19), Sn1-Lpc (22:5)-W3" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C30H53NO7P">
+      <species metaid="M_MAM03826c" sboTerm="SBO:0000247" id="M_MAM03826c" name="1-Docosapentenoylglycerophosphocholine (Delta 7, 10, 13, 16, 19), Sn1-Lpc (22:5)-W3" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C30H53NO7P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03826c">
+            <rdf:Description rdf:about="#M_MAM03826c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pcholn225_hs"/>
@@ -107017,10 +107069,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03825c" sboTerm="SBO:0000247" id="MAM03825c" name="1-Docosapentenoylglycerophosphocholine (Delta 4, 7, 10, 13, 16), Sn1-Lpc (22:5)-W6" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C30H53NO7P">
+      <species metaid="M_MAM03825c" sboTerm="SBO:0000247" id="M_MAM03825c" name="1-Docosapentenoylglycerophosphocholine (Delta 4, 7, 10, 13, 16), Sn1-Lpc (22:5)-W6" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C30H53NO7P">
         <annotation>
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-            <rdf:Description rdf:about="#MAM03825c">
+            <rdf:Description rdf:about="#M_MAM03825c">
               <bqbiol:is>
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                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pcholn2254_hs"/>
@@ -107031,10 +107083,10 @@
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-      <species metaid="MAM03827c" sboTerm="SBO:0000247" id="MAM03827c" name="1-Docosahexenoylglycerophosphocholine (Delta 4, 7, 10, 13, 16, 19), Sn1-Lpc (22:6)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C30H51NO7P">
+      <species metaid="M_MAM03827c" sboTerm="SBO:0000247" id="M_MAM03827c" name="1-Docosahexenoylglycerophosphocholine (Delta 4, 7, 10, 13, 16, 19), Sn1-Lpc (22:6)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C30H51NO7P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03827c">
+            <rdf:Description rdf:about="#M_MAM03827c">
               <bqbiol:is>
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                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pcholn226_hs"/>
@@ -107045,10 +107097,10 @@
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         </annotation>
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-      <species metaid="MAM03848c" sboTerm="SBO:0000247" id="MAM03848c" name="1-Arachidonoyl-Sn-Glycero-3-Phosphoethanolamine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H44NO7P">
+      <species metaid="M_MAM03848c" sboTerm="SBO:0000247" id="M_MAM03848c" name="1-Arachidonoyl-Sn-Glycero-3-Phosphoethanolamine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H44NO7P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03848c">
+            <rdf:Description rdf:about="#M_MAM03848c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pear_hs"/>
@@ -107061,10 +107113,10 @@
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         </annotation>
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-      <species metaid="MAM03844c" sboTerm="SBO:0000247" id="MAM03844c" name="1-Eicosatrienoylglycerophosphoethanolamine (Delta 11, 14, 17), Lpe (20:3)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H46NO7P">
+      <species metaid="M_MAM03844c" sboTerm="SBO:0000247" id="M_MAM03844c" name="1-Eicosatrienoylglycerophosphoethanolamine (Delta 11, 14, 17), Lpe (20:3)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H46NO7P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03844c">
+            <rdf:Description rdf:about="#M_MAM03844c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pe203_hs"/>
@@ -107076,10 +107128,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM03846c" sboTerm="SBO:0000247" id="MAM03846c" name="1-Docosahexenoylglyceroethanolamine (Delta 4, 7, 10, 13, 16, 19), Lpe (22:6)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H46NO7P">
+      <species metaid="M_MAM03846c" sboTerm="SBO:0000247" id="M_MAM03846c" name="1-Docosahexenoylglyceroethanolamine (Delta 4, 7, 10, 13, 16, 19), Lpe (22:6)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H46NO7P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03846c">
+            <rdf:Description rdf:about="#M_MAM03846c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pe226_hs"/>
@@ -107090,10 +107142,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM03845c" sboTerm="SBO:0000247" id="MAM03845c" name="1-Docosatetraenoyglycerophosphoethanolamine (22:4, Delta 7, 10, 13, 16)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H48NO7P">
+      <species metaid="M_MAM03845c" sboTerm="SBO:0000247" id="M_MAM03845c" name="1-Docosatetraenoyglycerophosphoethanolamine (22:4, Delta 7, 10, 13, 16)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H48NO7P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03845c">
+            <rdf:Description rdf:about="#M_MAM03845c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pe224_hs"/>
@@ -107105,10 +107157,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03855c" sboTerm="SBO:0000247" id="MAM03855c" name="1-Dihomo-Linolenoylglycerophosphoethanolamine (20:3, Delta 8, 11, 14)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H46NO7P">
+      <species metaid="M_MAM03855c" sboTerm="SBO:0000247" id="M_MAM03855c" name="1-Dihomo-Linolenoylglycerophosphoethanolamine (20:3, Delta 8, 11, 14)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H46NO7P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03855c">
+            <rdf:Description rdf:about="#M_MAM03855c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pedh203_hs"/>
@@ -107120,10 +107172,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03838c" sboTerm="SBO:0000247" id="MAM03838c" name="1-Didecanoylglycerophosphoethanolamine (C12:0 Pe)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C17H36NO7P">
+      <species metaid="M_MAM03838c" sboTerm="SBO:0000247" id="M_MAM03838c" name="1-Didecanoylglycerophosphoethanolamine (C12:0 Pe)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C17H36NO7P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03838c">
+            <rdf:Description rdf:about="#M_MAM03838c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pe12_hs"/>
@@ -107135,10 +107187,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03840c" sboTerm="SBO:0000247" id="MAM03840c" name="1-Myristoylglycerophosphoethanolamine (C14:0 Pe)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H40NO7P">
+      <species metaid="M_MAM03840c" sboTerm="SBO:0000247" id="M_MAM03840c" name="1-Myristoylglycerophosphoethanolamine (C14:0 Pe)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H40NO7P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03840c">
+            <rdf:Description rdf:about="#M_MAM03840c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pe14_hs"/>
@@ -107150,10 +107202,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03842c" sboTerm="SBO:0000247" id="MAM03842c" name="1-Hexadecenoylglycerophosphoethanolamine (C16:1 Pe, Delta 9)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H42NO7P">
+      <species metaid="M_MAM03842c" sboTerm="SBO:0000247" id="M_MAM03842c" name="1-Hexadecenoylglycerophosphoethanolamine (C16:1 Pe, Delta 9)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H42NO7P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03842c">
+            <rdf:Description rdf:about="#M_MAM03842c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pe161_hs"/>
@@ -107165,10 +107217,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03839c" sboTerm="SBO:0000247" id="MAM03839c" name="1-Tridecanoylglycerophosphoethanolamine (C13:0 Pe)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H38NO7P">
+      <species metaid="M_MAM03839c" sboTerm="SBO:0000247" id="M_MAM03839c" name="1-Tridecanoylglycerophosphoethanolamine (C13:0 Pe)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H38NO7P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03839c">
+            <rdf:Description rdf:about="#M_MAM03839c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pe13_hs"/>
@@ -107180,10 +107232,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03841c" sboTerm="SBO:0000247" id="MAM03841c" name="1-Pentadecanoylglycerophosphoethanolamine (C15:0 Pe)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H42NO7P">
+      <species metaid="M_MAM03841c" sboTerm="SBO:0000247" id="M_MAM03841c" name="1-Pentadecanoylglycerophosphoethanolamine (C15:0 Pe)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H42NO7P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03841c">
+            <rdf:Description rdf:about="#M_MAM03841c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pe15_hs"/>
@@ -107195,10 +107247,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03843c" sboTerm="SBO:0000247" id="MAM03843c" name="1-Heptadecanoylglycerophosphoethanolamine (C17:0 Pe)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C22H46NO7P">
+      <species metaid="M_MAM03843c" sboTerm="SBO:0000247" id="M_MAM03843c" name="1-Heptadecanoylglycerophosphoethanolamine (C17:0 Pe)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C22H46NO7P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03843c">
+            <rdf:Description rdf:about="#M_MAM03843c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pe17_hs"/>
@@ -107210,10 +107262,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03821c" sboTerm="SBO:0000247" id="MAM03821c" name="1-Dihomo-Linolenoylglycerophosphocholine (20:3, Delta 8, 11, 14), Lysopc A C20:3" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C28H53NO7P">
+      <species metaid="M_MAM03821c" sboTerm="SBO:0000247" id="M_MAM03821c" name="1-Dihomo-Linolenoylglycerophosphocholine (20:3, Delta 8, 11, 14), Lysopc A C20:3" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C28H53NO7P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03821c">
+            <rdf:Description rdf:about="#M_MAM03821c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pcholn203_hs"/>
@@ -107224,10 +107276,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03802c" sboTerm="SBO:0000247" id="MAM03802c" name="1-Arachidonoylglycerophosphoinositol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C29H48O12P">
+      <species metaid="M_MAM03802c" sboTerm="SBO:0000247" id="M_MAM03802c" name="1-Arachidonoylglycerophosphoinositol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C29H48O12P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03802c">
+            <rdf:Description rdf:about="#M_MAM03802c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pailar_hs"/>
@@ -107238,10 +107290,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03828c" sboTerm="SBO:0000247" id="MAM03828c" name="1-Lignocericylglycerophosphocholine (24:0), Lysopc A C24" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C32H67NO7P">
+      <species metaid="M_MAM03828c" sboTerm="SBO:0000247" id="M_MAM03828c" name="1-Lignocericylglycerophosphocholine (24:0), Lysopc A C24" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C32H67NO7P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03828c">
+            <rdf:Description rdf:about="#M_MAM03828c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pcholn24_hs"/>
@@ -107255,10 +107307,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03829c" sboTerm="SBO:0000247" id="MAM03829c" name="Lysopc A C26:1 (Delta 5)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C34H69NO7P">
+      <species metaid="M_MAM03829c" sboTerm="SBO:0000247" id="M_MAM03829c" name="Lysopc A C26:1 (Delta 5)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C34H69NO7P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03829c">
+            <rdf:Description rdf:about="#M_MAM03829c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pcholn261_hs"/>
@@ -107269,10 +107321,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03830c" sboTerm="SBO:0000247" id="MAM03830c" name="Lysopc A C28:1 (Delta 5)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C36H73NO7P">
+      <species metaid="M_MAM03830c" sboTerm="SBO:0000247" id="M_MAM03830c" name="Lysopc A C28:1 (Delta 5)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C36H73NO7P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03830c">
+            <rdf:Description rdf:about="#M_MAM03830c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pcholn281_hs"/>
@@ -107283,10 +107335,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03831c" sboTerm="SBO:0000247" id="MAM03831c" name="Lysopc A C28:0" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C36H75NO7P">
+      <species metaid="M_MAM03831c" sboTerm="SBO:0000247" id="M_MAM03831c" name="Lysopc A C28:0" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C36H75NO7P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03831c">
+            <rdf:Description rdf:about="#M_MAM03831c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pcholn28_hs"/>
@@ -107297,10 +107349,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03810c" sboTerm="SBO:0000247" id="MAM03810c" name="1-Docosahexaenoylglycerophosphocholine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C34H59NO7P">
+      <species metaid="M_MAM03810c" sboTerm="SBO:0000247" id="M_MAM03810c" name="1-Docosahexaenoylglycerophosphocholine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C34H59NO7P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03810c">
+            <rdf:Description rdf:about="#M_MAM03810c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pcholdoc_hs"/>
@@ -107311,10 +107363,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03811c" sboTerm="SBO:0000247" id="MAM03811c" name="1-Eicosadienoylglycerophosphocholine (Delta 11,14)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C28H55NO7P">
+      <species metaid="M_MAM03811c" sboTerm="SBO:0000247" id="M_MAM03811c" name="1-Eicosadienoylglycerophosphocholine (Delta 11,14)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C28H55NO7P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03811c">
+            <rdf:Description rdf:about="#M_MAM03811c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pcholeic_hs"/>
@@ -107325,10 +107377,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03812c" sboTerm="SBO:0000247" id="MAM03812c" name="1-Eicosatrienoylglycerophosphocholine (Delta 11, 14, 17)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C28H53NO7P">
+      <species metaid="M_MAM03812c" sboTerm="SBO:0000247" id="M_MAM03812c" name="1-Eicosatrienoylglycerophosphocholine (Delta 11, 14, 17)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C28H53NO7P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03812c">
+            <rdf:Description rdf:about="#M_MAM03812c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pcholet_hs"/>
@@ -107339,10 +107391,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03813c" sboTerm="SBO:0000247" id="MAM03813c" name="1-Heptadecanoylglycerophosphocholine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H53NO7P">
+      <species metaid="M_MAM03813c" sboTerm="SBO:0000247" id="M_MAM03813c" name="1-Heptadecanoylglycerophosphocholine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H53NO7P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03813c">
+            <rdf:Description rdf:about="#M_MAM03813c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pcholhep_hs"/>
@@ -107357,10 +107409,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03814c" sboTerm="SBO:0000247" id="MAM03814c" name="1-Linoleoylglycerophosphocholine (Delta 9,12)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C26H51NO7P">
+      <species metaid="M_MAM03814c" sboTerm="SBO:0000247" id="M_MAM03814c" name="1-Linoleoylglycerophosphocholine (Delta 9,12)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C26H51NO7P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03814c">
+            <rdf:Description rdf:about="#M_MAM03814c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pchollinl_hs"/>
@@ -107372,10 +107424,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03856c" sboTerm="SBO:0000247" id="MAM03856c" name="1-Linoleoylglycerophosphoethanolamine (Delta 9,12)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H44NO7P">
+      <species metaid="M_MAM03856c" sboTerm="SBO:0000247" id="M_MAM03856c" name="1-Linoleoylglycerophosphoethanolamine (Delta 9,12)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H44NO7P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03856c">
+            <rdf:Description rdf:about="#M_MAM03856c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pelinl_hs"/>
@@ -107388,10 +107440,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03569c" sboTerm="SBO:0000247" id="MAM03569c" name="Cis,Cis-11,14-Eicosadienoic Acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H35O2">
+      <species metaid="M_MAM03569c" sboTerm="SBO:0000247" id="M_MAM03569c" name="Cis,Cis-11,14-Eicosadienoic Acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H35O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03569c">
+            <rdf:Description rdf:about="#M_MAM03569c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/eidi1114ac"/>
@@ -107406,10 +107458,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03684c" sboTerm="SBO:0000247" id="MAM03684c" name="Hexanoate (N-C6:0)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H11O2">
+      <species metaid="M_MAM03684c" sboTerm="SBO:0000247" id="M_MAM03684c" name="Hexanoate (N-C6:0)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H11O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03684c">
+            <rdf:Description rdf:about="#M_MAM03684c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hxa"/>
@@ -107422,10 +107474,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03976c" sboTerm="SBO:0000247" id="MAM03976c" name="Cia-5,8, Tetradecadienoic Acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C14H23O2">
+      <species metaid="M_MAM03976c" sboTerm="SBO:0000247" id="M_MAM03976c" name="Cia-5,8, Tetradecadienoic Acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C14H23O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03976c">
+            <rdf:Description rdf:about="#M_MAM03976c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/tetdeca511ac"/>
@@ -107436,10 +107488,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03619c" sboTerm="SBO:0000247" id="MAM03619c" name="Glycerol 2-Phosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C3H7O6P">
+      <species metaid="M_MAM03619c" sboTerm="SBO:0000247" id="M_MAM03619c" name="Glycerol 2-Phosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C3H7O6P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03619c">
+            <rdf:Description rdf:about="#M_MAM03619c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/glyc2p"/>
@@ -107452,10 +107504,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03401c" sboTerm="SBO:0000247" id="MAM03401c" name="Acetyl-L-Lysine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H16N2O3">
+      <species metaid="M_MAM03401c" sboTerm="SBO:0000247" id="M_MAM03401c" name="Acetyl-L-Lysine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H16N2O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03401c">
+            <rdf:Description rdf:about="#M_MAM03401c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/aclys"/>
@@ -107467,10 +107519,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03276c" sboTerm="SBO:0000247" id="MAM03276c" name="4-Methyl-Thio-Oxo-Butyrate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C5H7O3S">
+      <species metaid="M_MAM03276c" sboTerm="SBO:0000247" id="M_MAM03276c" name="4-Methyl-Thio-Oxo-Butyrate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C5H7O3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03276c">
+            <rdf:Description rdf:about="#M_MAM03276c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/4mtob"/>
@@ -107481,10 +107533,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03248c" sboTerm="SBO:0000247" id="MAM03248c" name="3-Methyl-Thio-Propionate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H8OS">
+      <species metaid="M_MAM03248c" sboTerm="SBO:0000247" id="M_MAM03248c" name="3-Methyl-Thio-Propionate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H8OS">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03248c">
+            <rdf:Description rdf:about="#M_MAM03248c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/3mtp"/>
@@ -107497,10 +107549,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03248e" sboTerm="SBO:0000247" id="MAM03248e" name="3-Methyl-Thio-Propionate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H8OS">
+      <species metaid="M_MAM03248e" sboTerm="SBO:0000247" id="M_MAM03248e" name="3-Methyl-Thio-Propionate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H8OS">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03248e">
+            <rdf:Description rdf:about="#M_MAM03248e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/3mtp"/>
@@ -107513,10 +107565,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00126e" sboTerm="SBO:0000247" id="MAM00126e" name="(9E)-octadecenoylcarnitine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H47NO4">
+      <species metaid="M_MAM00126e" sboTerm="SBO:0000247" id="M_MAM00126e" name="(9E)-octadecenoylcarnitine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H47NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00126e">
+            <rdf:Description rdf:about="#M_MAM00126e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/elaidcrn"/>
@@ -107532,10 +107584,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02388e" sboTerm="SBO:0000247" id="MAM02388e" name="linoleic-carnitine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H45NO4">
+      <species metaid="M_MAM02388e" sboTerm="SBO:0000247" id="M_MAM02388e" name="linoleic-carnitine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H45NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02388e">
+            <rdf:Description rdf:about="#M_MAM02388e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/lnlccrn"/>
@@ -107549,10 +107601,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03882e" sboTerm="SBO:0000247" id="MAM03882e" name="Phenyllactate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C9H9O3">
+      <species metaid="M_MAM03882e" sboTerm="SBO:0000247" id="M_MAM03882e" name="Phenyllactate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C9H9O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03882e">
+            <rdf:Description rdf:about="#M_MAM03882e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/phlac"/>
@@ -107564,10 +107616,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00380e" sboTerm="SBO:0000247" id="MAM00380e" name="15(S)-HPETE" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O4">
+      <species metaid="M_MAM00380e" sboTerm="SBO:0000247" id="M_MAM00380e" name="15(S)-HPETE" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00380e">
+            <rdf:Description rdf:about="#M_MAM00380e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/15HPET"/>
@@ -107585,10 +107637,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01892e" sboTerm="SBO:0000247" id="MAM01892e" name="15-Keto-Prostaglandin F2A" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O5">
+      <species metaid="M_MAM01892e" sboTerm="SBO:0000247" id="M_MAM01892e" name="15-Keto-Prostaglandin F2A" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01892e">
+            <rdf:Description rdf:about="#M_MAM01892e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/15kprostgf2"/>
@@ -107600,10 +107652,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00605e" sboTerm="SBO:0000247" id="MAM00605e" name="21-hydroxypregnenolone" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H32O3">
+      <species metaid="M_MAM00605e" sboTerm="SBO:0000247" id="M_MAM00605e" name="21-hydroxypregnenolone" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H32O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00605e">
+            <rdf:Description rdf:about="#M_MAM00605e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/21hprgnlone"/>
@@ -107619,10 +107671,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00670e" sboTerm="SBO:0000247" id="MAM00670e" name="2-oxoadipate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H6O5">
+      <species metaid="M_MAM00670e" sboTerm="SBO:0000247" id="M_MAM00670e" name="2-oxoadipate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H6O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00670e">
+            <rdf:Description rdf:about="#M_MAM00670e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/2oxoadp"/>
@@ -107638,10 +107690,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01004e" sboTerm="SBO:0000247" id="MAM01004e" name="4-hydroxyphenyllactate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C9H9O4">
+      <species metaid="M_MAM01004e" sboTerm="SBO:0000247" id="M_MAM01004e" name="4-hydroxyphenyllactate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C9H9O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01004e">
+            <rdf:Description rdf:about="#M_MAM01004e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/34hpl"/>
@@ -107657,10 +107709,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00784c" sboTerm="SBO:0000247" id="MAM00784c" name="3-hydroxyisobutyrate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C4H7O3">
+      <species metaid="M_MAM00784c" sboTerm="SBO:0000247" id="M_MAM00784c" name="3-hydroxyisobutyrate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C4H7O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00784c">
+            <rdf:Description rdf:about="#M_MAM00784c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/3hmp"/>
@@ -107676,10 +107728,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00784e" sboTerm="SBO:0000247" id="MAM00784e" name="3-hydroxyisobutyrate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C4H7O3">
+      <species metaid="M_MAM00784e" sboTerm="SBO:0000247" id="M_MAM00784e" name="3-hydroxyisobutyrate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C4H7O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00784e">
+            <rdf:Description rdf:about="#M_MAM00784e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/3hmp"/>
@@ -107695,10 +107747,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03234c" sboTerm="SBO:0000247" id="MAM03234c" name="3-(3-Hydroxy-Phenyl)Propionate Hydroxy Derivative Glucuronide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C15H16O10">
+      <species metaid="M_MAM03234c" sboTerm="SBO:0000247" id="M_MAM03234c" name="3-(3-Hydroxy-Phenyl)Propionate Hydroxy Derivative Glucuronide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C15H16O10">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03234c">
+            <rdf:Description rdf:about="#M_MAM03234c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/3hpppnohgluc"/>
@@ -107709,10 +107761,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03234e" sboTerm="SBO:0000247" id="MAM03234e" name="3-(3-Hydroxy-Phenyl)Propionate Hydroxy Derivative Glucuronide" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C15H16O10">
+      <species metaid="M_MAM03234e" sboTerm="SBO:0000247" id="M_MAM03234e" name="3-(3-Hydroxy-Phenyl)Propionate Hydroxy Derivative Glucuronide" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C15H16O10">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03234e">
+            <rdf:Description rdf:about="#M_MAM03234e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/3hpppnohgluc"/>
@@ -107723,10 +107775,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03232c" sboTerm="SBO:0000247" id="MAM03232c" name="3-(3-Hydroxy-Phenyl)Propionate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C9H9O3">
+      <species metaid="M_MAM03232c" sboTerm="SBO:0000247" id="M_MAM03232c" name="3-(3-Hydroxy-Phenyl)Propionate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C9H9O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03232c">
+            <rdf:Description rdf:about="#M_MAM03232c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/3hpppn"/>
@@ -107739,10 +107791,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03233c" sboTerm="SBO:0000247" id="MAM03233c" name="3-(3-Hydroxy-Phenyl)Propionate Hydroxy Derivative" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C9H9O4">
+      <species metaid="M_MAM03233c" sboTerm="SBO:0000247" id="M_MAM03233c" name="3-(3-Hydroxy-Phenyl)Propionate Hydroxy Derivative" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C9H9O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03233c">
+            <rdf:Description rdf:about="#M_MAM03233c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/3hpppnoh"/>
@@ -107753,10 +107805,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02142e" sboTerm="SBO:0000247" id="MAM02142e" name="hydracrylate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C3H5O3">
+      <species metaid="M_MAM02142e" sboTerm="SBO:0000247" id="M_MAM02142e" name="hydracrylate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C3H5O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02142e">
+            <rdf:Description rdf:about="#M_MAM02142e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/3hpp"/>
@@ -107772,10 +107824,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03247e" sboTerm="SBO:0000247" id="MAM03247e" name="3-Methylhistidine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H11N3O2">
+      <species metaid="M_MAM03247e" sboTerm="SBO:0000247" id="M_MAM03247e" name="3-Methylhistidine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H11N3O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03247e">
+            <rdf:Description rdf:about="#M_MAM03247e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/3mhis"/>
@@ -107788,10 +107840,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00821e" sboTerm="SBO:0000247" id="MAM00821e" name="3-methoxytyramine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C9H14NO2">
+      <species metaid="M_MAM00821e" sboTerm="SBO:0000247" id="M_MAM00821e" name="3-methoxytyramine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C9H14NO2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00821e">
+            <rdf:Description rdf:about="#M_MAM00821e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/3moxtyr"/>
@@ -107807,10 +107859,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00922e" sboTerm="SBO:0000247" id="MAM00922e" name="3-ureidoisobutyrate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C5H9N2O3">
+      <species metaid="M_MAM00922e" sboTerm="SBO:0000247" id="M_MAM00922e" name="3-ureidoisobutyrate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C5H9N2O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00922e">
+            <rdf:Description rdf:about="#M_MAM00922e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/3uib"/>
@@ -107826,10 +107878,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00952e" sboTerm="SBO:0000247" id="MAM00952e" name="4-acetamidobutanoate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H10NO3">
+      <species metaid="M_MAM00952e" sboTerm="SBO:0000247" id="M_MAM00952e" name="4-acetamidobutanoate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H10NO3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00952e">
+            <rdf:Description rdf:about="#M_MAM00952e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/4aabutn"/>
@@ -107845,10 +107897,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01922e" sboTerm="SBO:0000247" id="MAM01922e" name="gamma-butyrobetaine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H15NO2">
+      <species metaid="M_MAM01922e" sboTerm="SBO:0000247" id="M_MAM01922e" name="gamma-butyrobetaine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H15NO2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01922e">
+            <rdf:Description rdf:about="#M_MAM01922e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/4tmeabutn"/>
@@ -107863,10 +107915,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01705e" sboTerm="SBO:0000247" id="MAM01705e" name="dihydrothymine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H8N2O2">
+      <species metaid="M_MAM01705e" sboTerm="SBO:0000247" id="M_MAM01705e" name="dihydrothymine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H8N2O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01705e">
+            <rdf:Description rdf:about="#M_MAM01705e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/56dthm"/>
@@ -107883,10 +107935,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01052e" sboTerm="SBO:0000247" id="MAM01052e" name="5,6-Dihydrouracil" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H6N2O2">
+      <species metaid="M_MAM01052e" sboTerm="SBO:0000247" id="M_MAM01052e" name="5,6-Dihydrouracil" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H6N2O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01052e">
+            <rdf:Description rdf:about="#M_MAM01052e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/56dura"/>
@@ -107903,10 +107955,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01074e" sboTerm="SBO:0000247" id="MAM01074e" name="5-aminolevulinate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H9NO3">
+      <species metaid="M_MAM01074e" sboTerm="SBO:0000247" id="M_MAM01074e" name="5-aminolevulinate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H9NO3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01074e">
+            <rdf:Description rdf:about="#M_MAM01074e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/5aop"/>
@@ -107923,10 +107975,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01042e" sboTerm="SBO:0000247" id="MAM01042e" name="5(S)-HPETE" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O4">
+      <species metaid="M_MAM01042e" sboTerm="SBO:0000247" id="M_MAM01042e" name="5(S)-HPETE" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01042e">
+            <rdf:Description rdf:about="#M_MAM01042e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/5HPET"/>
@@ -107942,10 +107994,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02805e" sboTerm="SBO:0000247" id="MAM02805e" name="provitamin D3" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H44O">
+      <species metaid="M_MAM02805e" sboTerm="SBO:0000247" id="M_MAM02805e" name="provitamin D3" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H44O">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02805e">
+            <rdf:Description rdf:about="#M_MAM02805e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/7dhchsterol"/>
@@ -107964,10 +108016,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03396e" sboTerm="SBO:0000247" id="MAM03396e" name="D-Arabitol" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H12O5">
+      <species metaid="M_MAM03396e" sboTerm="SBO:0000247" id="M_MAM03396e" name="D-Arabitol" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H12O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03396e">
+            <rdf:Description rdf:about="#M_MAM03396e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/abt__D"/>
@@ -107980,10 +108032,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03396c" sboTerm="SBO:0000247" id="MAM03396c" name="D-Arabitol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H12O5">
+      <species metaid="M_MAM03396c" sboTerm="SBO:0000247" id="M_MAM03396c" name="D-Arabitol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H12O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03396c">
+            <rdf:Description rdf:about="#M_MAM03396c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/abt__D"/>
@@ -107996,10 +108048,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02536c" sboTerm="SBO:0000247" id="MAM02536c" name="N-acetyl-L-glutamate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C7H9NO5">
+      <species metaid="M_MAM02536c" sboTerm="SBO:0000247" id="M_MAM02536c" name="N-acetyl-L-glutamate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C7H9NO5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02536c">
+            <rdf:Description rdf:about="#M_MAM02536c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/acglu"/>
@@ -108015,10 +108067,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02536e" sboTerm="SBO:0000247" id="MAM02536e" name="N-acetyl-L-glutamate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C7H9NO5">
+      <species metaid="M_MAM02536e" sboTerm="SBO:0000247" id="M_MAM02536e" name="N-acetyl-L-glutamate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C7H9NO5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02536e">
+            <rdf:Description rdf:about="#M_MAM02536e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/acglu"/>
@@ -108034,10 +108086,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03397m" sboTerm="SBO:0000247" id="MAM03397m" name="Acetyl-Glycine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C4H6NO3">
+      <species metaid="M_MAM03397m" sboTerm="SBO:0000247" id="M_MAM03397m" name="Acetyl-Glycine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C4H6NO3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03397m">
+            <rdf:Description rdf:about="#M_MAM03397m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/acgly"/>
@@ -108048,10 +108100,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03397c" sboTerm="SBO:0000247" id="MAM03397c" name="Acetyl-Glycine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C4H6NO3">
+      <species metaid="M_MAM03397c" sboTerm="SBO:0000247" id="M_MAM03397c" name="Acetyl-Glycine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C4H6NO3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03397c">
+            <rdf:Description rdf:about="#M_MAM03397c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/acgly"/>
@@ -108062,10 +108114,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03397e" sboTerm="SBO:0000247" id="MAM03397e" name="Acetyl-Glycine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C4H6NO3">
+      <species metaid="M_MAM03397e" sboTerm="SBO:0000247" id="M_MAM03397e" name="Acetyl-Glycine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C4H6NO3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03397e">
+            <rdf:Description rdf:about="#M_MAM03397e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/acgly"/>
@@ -108076,10 +108128,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03401e" sboTerm="SBO:0000247" id="MAM03401e" name="Acetyl-L-Lysine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H16N2O3">
+      <species metaid="M_MAM03401e" sboTerm="SBO:0000247" id="M_MAM03401e" name="Acetyl-L-Lysine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H16N2O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03401e">
+            <rdf:Description rdf:about="#M_MAM03401e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/aclys"/>
@@ -108091,10 +108143,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03401m" sboTerm="SBO:0000247" id="MAM03401m" name="Acetyl-L-Lysine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H16N2O3">
+      <species metaid="M_MAM03401m" sboTerm="SBO:0000247" id="M_MAM03401m" name="Acetyl-L-Lysine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H16N2O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03401m">
+            <rdf:Description rdf:about="#M_MAM03401m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/aclys"/>
@@ -108106,10 +108158,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02546e" sboTerm="SBO:0000247" id="MAM02546e" name="N-acetylornithine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H14N2O3">
+      <species metaid="M_MAM02546e" sboTerm="SBO:0000247" id="M_MAM02546e" name="N-acetylornithine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H14N2O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02546e">
+            <rdf:Description rdf:about="#M_MAM02546e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/acorn"/>
@@ -108126,10 +108178,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03406m" sboTerm="SBO:0000247" id="MAM03406m" name="Acetyl-Threonine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H10NO4">
+      <species metaid="M_MAM03406m" sboTerm="SBO:0000247" id="M_MAM03406m" name="Acetyl-Threonine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H10NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03406m">
+            <rdf:Description rdf:about="#M_MAM03406m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/acthr_L"/>
@@ -108139,10 +108191,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03406c" sboTerm="SBO:0000247" id="MAM03406c" name="Acetyl-Threonine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H10NO4">
+      <species metaid="M_MAM03406c" sboTerm="SBO:0000247" id="M_MAM03406c" name="Acetyl-Threonine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H10NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03406c">
+            <rdf:Description rdf:about="#M_MAM03406c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/acthr_L"/>
@@ -108152,10 +108204,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03406e" sboTerm="SBO:0000247" id="MAM03406e" name="Acetyl-Threonine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H10NO4">
+      <species metaid="M_MAM03406e" sboTerm="SBO:0000247" id="M_MAM03406e" name="Acetyl-Threonine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H10NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03406e">
+            <rdf:Description rdf:about="#M_MAM03406e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/acthr_L"/>
@@ -108165,10 +108217,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03408e" sboTerm="SBO:0000247" id="MAM03408e" name="Adipic Acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H8O4">
+      <species metaid="M_MAM03408e" sboTerm="SBO:0000247" id="M_MAM03408e" name="Adipic Acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H8O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03408e">
+            <rdf:Description rdf:about="#M_MAM03408e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/adpac"/>
@@ -108184,10 +108236,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03410e" sboTerm="SBO:0000247" id="MAM03410e" name="2-Hydroxyadipic Acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H8O5">
+      <species metaid="M_MAM03410e" sboTerm="SBO:0000247" id="M_MAM03410e" name="2-Hydroxyadipic Acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H8O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03410e">
+            <rdf:Description rdf:about="#M_MAM03410e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/adpoh"/>
@@ -108198,10 +108250,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01313e" sboTerm="SBO:0000247" id="MAM01313e" name="allantoin" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H6N4O3">
+      <species metaid="M_MAM01313e" sboTerm="SBO:0000247" id="M_MAM01313e" name="allantoin" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H6N4O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01313e">
+            <rdf:Description rdf:about="#M_MAM01313e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:15676"/>
@@ -108217,10 +108269,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02877e" sboTerm="SBO:0000247" id="MAM02877e" name="SAM" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C15H23N6O5S">
+      <species metaid="M_MAM02877e" sboTerm="SBO:0000247" id="M_MAM02877e" name="SAM" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C15H23N6O5S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02877e">
+            <rdf:Description rdf:about="#M_MAM02877e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/amet"/>
@@ -108236,10 +108288,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03433e" sboTerm="SBO:0000247" id="MAM03433e" name="19-Hydroxyandrost-4-Ene-3,17-Dione" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H26O3">
+      <species metaid="M_MAM03433e" sboTerm="SBO:0000247" id="M_MAM03433e" name="19-Hydroxyandrost-4-Ene-3,17-Dione" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H26O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03433e">
+            <rdf:Description rdf:about="#M_MAM03433e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/and19one"/>
@@ -108251,10 +108303,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02733e" sboTerm="SBO:0000247" id="MAM02733e" name="phosphatidate-LD-TAG pool" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C5H5O8PR2">
+      <species metaid="M_MAM02733e" sboTerm="SBO:0000247" id="M_MAM02733e" name="phosphatidate-LD-TAG pool" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C5H5O8PR2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02733e">
+            <rdf:Description rdf:about="#M_MAM02733e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pa_hs"/>
@@ -108269,10 +108321,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03434e" sboTerm="SBO:0000247" id="MAM03434e" name="O-Arachidonoyl Ethanolamine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C22H38NO2">
+      <species metaid="M_MAM03434e" sboTerm="SBO:0000247" id="M_MAM03434e" name="O-Arachidonoyl Ethanolamine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C22H38NO2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03434e">
+            <rdf:Description rdf:about="#M_MAM03434e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/aracheth"/>
@@ -108283,10 +108335,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01399e" sboTerm="SBO:0000247" id="MAM01399e" name="biliverdin" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C33H32N4O6">
+      <species metaid="M_MAM01399e" sboTerm="SBO:0000247" id="M_MAM01399e" name="biliverdin" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C33H32N4O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01399e">
+            <rdf:Description rdf:about="#M_MAM01399e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/biliverd"/>
@@ -108300,10 +108352,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00169e" sboTerm="SBO:0000247" id="MAM00169e" name="(S)-2-aminobutanoate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H9NO2">
+      <species metaid="M_MAM00169e" sboTerm="SBO:0000247" id="M_MAM00169e" name="(S)-2-aminobutanoate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H9NO2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00169e">
+            <rdf:Description rdf:about="#M_MAM00169e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:35619"/>
@@ -108320,10 +108372,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02540e" sboTerm="SBO:0000247" id="MAM02540e" name="N-acetylmethionine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C7H12NO3S">
+      <species metaid="M_MAM02540e" sboTerm="SBO:0000247" id="M_MAM02540e" name="N-acetylmethionine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C7H12NO3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02540e">
+            <rdf:Description rdf:about="#M_MAM02540e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:165927"/>
@@ -108338,10 +108390,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00337e" sboTerm="SBO:0000247" id="MAM00337e" name="13(S)-HPODE" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H31O4">
+      <species metaid="M_MAM00337e" sboTerm="SBO:0000247" id="M_MAM00337e" name="13(S)-HPODE" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H31O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00337e">
+            <rdf:Description rdf:about="#M_MAM00337e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:15655"/>
@@ -108358,10 +108410,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01040e" sboTerm="SBO:0000247" id="MAM01040e" name="5(S)-HETE" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O3">
+      <species metaid="M_MAM01040e" sboTerm="SBO:0000247" id="M_MAM01040e" name="5(S)-HETE" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01040e">
+            <rdf:Description rdf:about="#M_MAM01040e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:28209"/>
@@ -108377,10 +108429,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02796e" sboTerm="SBO:0000247" id="MAM02796e" name="prostaglandin J2" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H29O4">
+      <species metaid="M_MAM02796e" sboTerm="SBO:0000247" id="M_MAM02796e" name="prostaglandin J2" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H29O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02796e">
+            <rdf:Description rdf:about="#M_MAM02796e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:27485"/>
@@ -108396,10 +108448,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02395e" sboTerm="SBO:0000247" id="MAM02395e" name="lipoxin A4" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O5">
+      <species metaid="M_MAM02395e" sboTerm="SBO:0000247" id="M_MAM02395e" name="lipoxin A4" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02395e">
+            <rdf:Description rdf:about="#M_MAM02395e">
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@@ -108415,10 +108467,10 @@
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+      <species metaid="M_MAM02396e" sboTerm="SBO:0000247" id="M_MAM02396e" name="lipoxin B4" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02396e">
+            <rdf:Description rdf:about="#M_MAM02396e">
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@@ -108434,10 +108486,10 @@
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+      <species metaid="M_MAM01335e" sboTerm="SBO:0000247" id="M_MAM01335e" name="anandamide" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C22H37NO2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01335e">
+            <rdf:Description rdf:about="#M_MAM01335e">
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@@ -108454,10 +108506,10 @@
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+      <species metaid="M_MAM01054e" sboTerm="SBO:0000247" id="M_MAM01054e" name="5,6-EET" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O3">
         <annotation>
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-            <rdf:Description rdf:about="#MAM01054e">
+            <rdf:Description rdf:about="#M_MAM01054e">
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@@ -108473,10 +108525,10 @@
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+      <species metaid="M_MAM01209e" sboTerm="SBO:0000247" id="M_MAM01209e" name="8,9-EET" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01209e">
+            <rdf:Description rdf:about="#M_MAM01209e">
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@@ -108492,10 +108544,10 @@
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+      <species metaid="M_MAM00279e" sboTerm="SBO:0000247" id="M_MAM00279e" name="11,12-EET" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00279e">
+            <rdf:Description rdf:about="#M_MAM00279e">
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@@ -108510,10 +108562,10 @@
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+      <species metaid="M_MAM00366e" sboTerm="SBO:0000247" id="M_MAM00366e" name="14,15-EET" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00366e">
+            <rdf:Description rdf:about="#M_MAM00366e">
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@@ -108529,10 +108581,10 @@
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+      <species metaid="M_MAM01216e" sboTerm="SBO:0000247" id="M_MAM01216e" name="9(10)-EpOME" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H31O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01216e">
+            <rdf:Description rdf:about="#M_MAM01216e">
               <bqbiol:is>
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                   <rdf:li rdf:resource="https://identifiers.org/hmdb/HMDB04701"/>
@@ -108548,10 +108600,10 @@
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+      <species metaid="M_MAM00305e" sboTerm="SBO:0000247" id="M_MAM00305e" name="12(13)-EpOME" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H31O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00305e">
+            <rdf:Description rdf:about="#M_MAM00305e">
               <bqbiol:is>
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@@ -108567,10 +108619,10 @@
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-      <species metaid="MAM01168e" sboTerm="SBO:0000247" id="MAM01168e" name="6-oxo-prostaglandin F1alpha" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H33O6">
+      <species metaid="M_MAM01168e" sboTerm="SBO:0000247" id="M_MAM01168e" name="6-oxo-prostaglandin F1alpha" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H33O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01168e">
+            <rdf:Description rdf:about="#M_MAM01168e">
               <bqbiol:is>
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                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:28158"/>
@@ -108585,10 +108637,10 @@
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-      <species metaid="MAM00308e" sboTerm="SBO:0000247" id="MAM00308e" name="12(S)-HHT" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C17H27O3">
+      <species metaid="M_MAM00308e" sboTerm="SBO:0000247" id="M_MAM00308e" name="12(S)-HHT" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C17H27O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00308e">
+            <rdf:Description rdf:about="#M_MAM00308e">
               <bqbiol:is>
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                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM13995"/>
@@ -108600,10 +108652,10 @@
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-      <species metaid="MAM01087e" sboTerm="SBO:0000247" id="MAM01087e" name="5beta-cholestane-3alpha,7alpha,12alpha,24s,25-pentol" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H48O5">
+      <species metaid="M_MAM01087e" sboTerm="SBO:0000247" id="M_MAM01087e" name="5beta-cholestane-3alpha,7alpha,12alpha,24s,25-pentol" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H48O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01087e">
+            <rdf:Description rdf:about="#M_MAM01087e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/hmdb/HMDB02208"/>
@@ -108618,10 +108670,10 @@
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-      <species metaid="MAM03329e" sboTerm="SBO:0000247" id="MAM03329e" name="8-Dehydrocholesterol" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H44O">
+      <species metaid="M_MAM03329e" sboTerm="SBO:0000247" id="M_MAM03329e" name="8-Dehydrocholesterol" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H44O">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03329e">
+            <rdf:Description rdf:about="#M_MAM03329e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/CE1297"/>
@@ -108635,10 +108687,10 @@
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-      <species metaid="MAM02530e" sboTerm="SBO:0000247" id="MAM02530e" name="N-acetyl-L-alanine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C5H8NO3">
+      <species metaid="M_MAM02530e" sboTerm="SBO:0000247" id="M_MAM02530e" name="N-acetyl-L-alanine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C5H8NO3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02530e">
+            <rdf:Description rdf:about="#M_MAM02530e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM19630"/>
@@ -108650,10 +108702,10 @@
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-      <species metaid="MAM02531e" sboTerm="SBO:0000247" id="MAM02531e" name="N-acetyl-L-asparagine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H9N2O4">
+      <species metaid="M_MAM02531e" sboTerm="SBO:0000247" id="M_MAM02531e" name="N-acetyl-L-asparagine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H9N2O4">
         <annotation>
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-            <rdf:Description rdf:about="#MAM02531e">
+            <rdf:Description rdf:about="#M_MAM02531e">
               <bqbiol:is>
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                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM163469"/>
@@ -108665,10 +108717,10 @@
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-      <species metaid="MAM01392e" sboTerm="SBO:0000247" id="MAM01392e" name="beta-hydroxy-beta-methylbutyrate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C5H9O3">
+      <species metaid="M_MAM01392e" sboTerm="SBO:0000247" id="M_MAM01392e" name="beta-hydroxy-beta-methylbutyrate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C5H9O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01392e">
+            <rdf:Description rdf:about="#M_MAM01392e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:37084"/>
@@ -108682,10 +108734,10 @@
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-      <species metaid="MAM00830e" sboTerm="SBO:0000247" id="MAM00830e" name="3-O-methyldopa" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H13NO4">
+      <species metaid="M_MAM00830e" sboTerm="SBO:0000247" id="M_MAM00830e" name="3-O-methyldopa" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H13NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00830e">
+            <rdf:Description rdf:about="#M_MAM00830e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/hmdb/HMDB01434"/>
@@ -108699,10 +108751,10 @@
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-      <species metaid="MAM01172e" sboTerm="SBO:0000247" id="MAM01172e" name="6-trans-LTB4" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H31O4">
+      <species metaid="M_MAM01172e" sboTerm="SBO:0000247" id="M_MAM01172e" name="6-trans-LTB4" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H31O4">
         <annotation>
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-            <rdf:Description rdf:about="#MAM01172e">
+            <rdf:Description rdf:about="#M_MAM01172e">
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                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:63981"/>
@@ -108717,10 +108769,10 @@
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       </species>
-      <species metaid="MAM03332e" sboTerm="SBO:0000247" id="MAM03332e" name="(8Z,11Z,14Z)-Eicosatrienoic Acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H33O2">
+      <species metaid="M_MAM03332e" sboTerm="SBO:0000247" id="M_MAM03332e" name="(8Z,11Z,14Z)-Eicosatrienoic Acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H33O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03332e">
+            <rdf:Description rdf:about="#M_MAM03332e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:53486"/>
@@ -108734,10 +108786,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM00378e" sboTerm="SBO:0000247" id="MAM00378e" name="15(S)-HETrE" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H33O3">
+      <species metaid="M_MAM00378e" sboTerm="SBO:0000247" id="M_MAM00378e" name="15(S)-HETrE" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H33O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00378e">
+            <rdf:Description rdf:about="#M_MAM00378e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/LMFA03050007"/>
@@ -108751,10 +108803,10 @@
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       </species>
-      <species metaid="MAM03569e" sboTerm="SBO:0000247" id="MAM03569e" name="Cis,Cis-11,14-Eicosadienoic Acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H35O2">
+      <species metaid="M_MAM03569e" sboTerm="SBO:0000247" id="M_MAM03569e" name="Cis,Cis-11,14-Eicosadienoic Acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H35O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03569e">
+            <rdf:Description rdf:about="#M_MAM03569e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/eidi1114ac"/>
@@ -108769,10 +108821,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM00384e" sboTerm="SBO:0000247" id="MAM00384e" name="15-deoxy-PGD2" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H29O4">
+      <species metaid="M_MAM00384e" sboTerm="SBO:0000247" id="M_MAM00384e" name="15-deoxy-PGD2" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H29O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00384e">
+            <rdf:Description rdf:about="#M_MAM00384e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM33412"/>
@@ -108784,10 +108836,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM01337e" sboTerm="SBO:0000247" id="MAM01337e" name="androsterone sulfate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C19H29O5S">
+      <species metaid="M_MAM01337e" sboTerm="SBO:0000247" id="M_MAM01337e" name="androsterone sulfate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C19H29O5S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01337e">
+            <rdf:Description rdf:about="#M_MAM01337e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM42074"/>
@@ -108799,10 +108851,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM01047e" sboTerm="SBO:0000247" id="MAM01047e" name="5,12,20-TriHETE" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O5">
+      <species metaid="M_MAM01047e" sboTerm="SBO:0000247" id="M_MAM01047e" name="5,12,20-TriHETE" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01047e">
+            <rdf:Description rdf:about="#M_MAM01047e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM164328"/>
@@ -108814,10 +108866,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM00376e" sboTerm="SBO:0000247" id="MAM00376e" name="15(S)-HEPE" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H29O3">
+      <species metaid="M_MAM00376e" sboTerm="SBO:0000247" id="M_MAM00376e" name="15(S)-HEPE" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H29O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00376e">
+            <rdf:Description rdf:about="#M_MAM00376e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/LMFA03070009"/>
@@ -108830,10 +108882,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM02365e" sboTerm="SBO:0000247" id="MAM02365e" name="leukotriene B5" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H29O4">
+      <species metaid="M_MAM02365e" sboTerm="SBO:0000247" id="M_MAM02365e" name="leukotriene B5" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H29O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02365e">
+            <rdf:Description rdf:about="#M_MAM02365e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/LMFA03070018"/>
@@ -108846,10 +108898,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM00365e" sboTerm="SBO:0000247" id="MAM00365e" name="14,15-DiHETE" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O4">
+      <species metaid="M_MAM00365e" sboTerm="SBO:0000247" id="M_MAM00365e" name="14,15-DiHETE" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00365e">
+            <rdf:Description rdf:about="#M_MAM00365e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/LMFA03060077"/>
@@ -108862,10 +108914,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01616e" sboTerm="SBO:0000247" id="MAM01616e" name="cortisone" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H28O5">
+      <species metaid="M_MAM01616e" sboTerm="SBO:0000247" id="M_MAM01616e" name="cortisone" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H28O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01616e">
+            <rdf:Description rdf:about="#M_MAM01616e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/cortsn"/>
@@ -108882,10 +108934,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03550e" sboTerm="SBO:0000247" id="MAM03550e" name="C12:0-Ethanolamide, Didecanoyl Ethanolamide" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C14H29NO2">
+      <species metaid="M_MAM03550e" sboTerm="SBO:0000247" id="M_MAM03550e" name="C12:0-Ethanolamide, Didecanoyl Ethanolamide" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C14H29NO2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03550e">
+            <rdf:Description rdf:about="#M_MAM03550e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/didecaeth"/>
@@ -108898,10 +108950,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03551e" sboTerm="SBO:0000247" id="MAM03551e" name="Dihomo-Gamma-Linolenoyl Ethanolamide" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C22H39NO2">
+      <species metaid="M_MAM03551e" sboTerm="SBO:0000247" id="M_MAM03551e" name="Dihomo-Gamma-Linolenoyl Ethanolamide" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C22H39NO2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03551e">
+            <rdf:Description rdf:about="#M_MAM03551e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/diholineth"/>
@@ -108913,10 +108965,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03558e" sboTerm="SBO:0000247" id="MAM03558e" name="Docosahexaenoyl Ethanolamide" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C24H37NO2">
+      <species metaid="M_MAM03558e" sboTerm="SBO:0000247" id="M_MAM03558e" name="Docosahexaenoyl Ethanolamide" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C24H37NO2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03558e">
+            <rdf:Description rdf:about="#M_MAM03558e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/docohxeth"/>
@@ -108929,10 +108981,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03561e" sboTerm="SBO:0000247" id="MAM03561e" name="Docosatetraenoyl Ethanolamide (22:4, Delta 7, 10, 13, 16)" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C24H41NO2">
+      <species metaid="M_MAM03561e" sboTerm="SBO:0000247" id="M_MAM03561e" name="Docosatetraenoyl Ethanolamide (22:4, Delta 7, 10, 13, 16)" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C24H41NO2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03561e">
+            <rdf:Description rdf:about="#M_MAM03561e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/docteteth"/>
@@ -108945,10 +108997,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03562e" sboTerm="SBO:0000247" id="MAM03562e" name="Dodecanedioic Acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C12H20O4">
+      <species metaid="M_MAM03562e" sboTerm="SBO:0000247" id="M_MAM03562e" name="Dodecanedioic Acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C12H20O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03562e">
+            <rdf:Description rdf:about="#M_MAM03562e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dodecanac"/>
@@ -108961,10 +109013,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02574e" sboTerm="SBO:0000247" id="MAM02574e" name="N-formimino-L-glutamate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H8N2O4">
+      <species metaid="M_MAM02574e" sboTerm="SBO:0000247" id="M_MAM02574e" name="N-formimino-L-glutamate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H8N2O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02574e">
+            <rdf:Description rdf:about="#M_MAM02574e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/forglu"/>
@@ -108980,10 +109032,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02479e" sboTerm="SBO:0000247" id="MAM02479e" name="methylmalonate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C4H4O4">
+      <species metaid="M_MAM02479e" sboTerm="SBO:0000247" id="M_MAM02479e" name="methylmalonate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C4H4O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02479e">
+            <rdf:Description rdf:about="#M_MAM02479e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:30860"/>
@@ -108998,10 +109050,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03649e" sboTerm="SBO:0000247" id="MAM03649e" name="Heptadecanoyl Thanolamide (C17:0)" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H39NO2">
+      <species metaid="M_MAM03649e" sboTerm="SBO:0000247" id="M_MAM03649e" name="Heptadecanoyl Thanolamide (C17:0)" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H39NO2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03649e">
+            <rdf:Description rdf:about="#M_MAM03649e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hepdeceth"/>
@@ -109014,10 +109066,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03652e" sboTerm="SBO:0000247" id="MAM03652e" name="Hexadecenoyl Ethanolamide, C16:1-Ethanolamide (Delta 9)" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H35NO2">
+      <species metaid="M_MAM03652e" sboTerm="SBO:0000247" id="M_MAM03652e" name="Hexadecenoyl Ethanolamide, C16:1-Ethanolamide (Delta 9)" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H35NO2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03652e">
+            <rdf:Description rdf:about="#M_MAM03652e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hexdeceeth"/>
@@ -109029,10 +109081,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03654e" sboTerm="SBO:0000247" id="MAM03654e" name="Hexadecanediocacid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C16H28O4">
+      <species metaid="M_MAM03654e" sboTerm="SBO:0000247" id="M_MAM03654e" name="Hexadecanediocacid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C16H28O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03654e">
+            <rdf:Description rdf:about="#M_MAM03654e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hexdiac"/>
@@ -109045,10 +109097,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02135e" sboTerm="SBO:0000247" id="MAM02135e" name="homogentisate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C8H7O4">
+      <species metaid="M_MAM02135e" sboTerm="SBO:0000247" id="M_MAM02135e" name="homogentisate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C8H7O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02135e">
+            <rdf:Description rdf:about="#M_MAM02135e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hgentis"/>
@@ -109064,10 +109116,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02132e" sboTerm="SBO:0000247" id="MAM02132e" name="homocarnosine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H16N4O3">
+      <species metaid="M_MAM02132e" sboTerm="SBO:0000247" id="M_MAM02132e" name="homocarnosine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H16N4O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02132e">
+            <rdf:Description rdf:about="#M_MAM02132e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hmcarn"/>
@@ -109080,10 +109132,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03681e" sboTerm="SBO:0000247" id="MAM03681e" name="Homocitrulline" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H15N3O3">
+      <species metaid="M_MAM03681e" sboTerm="SBO:0000247" id="M_MAM03681e" name="Homocitrulline" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H15N3O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03681e">
+            <rdf:Description rdf:about="#M_MAM03681e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hmcr"/>
@@ -109095,10 +109147,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02122e" sboTerm="SBO:0000247" id="MAM02122e" name="hexanoyl-CoA" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C27H42N7O17P3S">
+      <species metaid="M_MAM02122e" sboTerm="SBO:0000247" id="M_MAM02122e" name="hexanoyl-CoA" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C27H42N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02122e">
+            <rdf:Description rdf:about="#M_MAM02122e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:27540"/>
@@ -109115,10 +109167,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00585e" sboTerm="SBO:0000247" id="MAM00585e" name="20-COOH-LTB4" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C20H28O6">
+      <species metaid="M_MAM00585e" sboTerm="SBO:0000247" id="M_MAM00585e" name="20-COOH-LTB4" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C20H28O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00585e">
+            <rdf:Description rdf:about="#M_MAM00585e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/leuktrB4wcooh"/>
@@ -109135,10 +109187,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00599e" sboTerm="SBO:0000247" id="MAM00599e" name="20-OH-LTB4" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O5">
+      <species metaid="M_MAM00599e" sboTerm="SBO:0000247" id="M_MAM00599e" name="20-OH-LTB4" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00599e">
+            <rdf:Description rdf:about="#M_MAM00599e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/leuktrB4woh"/>
@@ -109156,10 +109208,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03724e" sboTerm="SBO:0000247" id="MAM03724e" name="Linoleoyl Ethanolamide" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H37NO2">
+      <species metaid="M_MAM03724e" sboTerm="SBO:0000247" id="M_MAM03724e" name="Linoleoyl Ethanolamide" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H37NO2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03724e">
+            <rdf:Description rdf:about="#M_MAM03724e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/lineth"/>
@@ -109171,10 +109223,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02413e" sboTerm="SBO:0000247" id="MAM02413e" name="L-pipecolate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H11NO2">
+      <species metaid="M_MAM02413e" sboTerm="SBO:0000247" id="M_MAM02413e" name="L-pipecolate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H11NO2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02413e">
+            <rdf:Description rdf:about="#M_MAM02413e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/Lpipecol"/>
@@ -109191,10 +109243,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02343e" sboTerm="SBO:0000247" id="MAM02343e" name="lathosterol" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H46O">
+      <species metaid="M_MAM02343e" sboTerm="SBO:0000247" id="M_MAM02343e" name="lathosterol" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H46O">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02343e">
+            <rdf:Description rdf:about="#M_MAM02343e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/lthstrl"/>
@@ -109213,10 +109265,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00167e" sboTerm="SBO:0000247" id="MAM00167e" name="(R)-mevalonate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H11O4">
+      <species metaid="M_MAM00167e" sboTerm="SBO:0000247" id="M_MAM00167e" name="(R)-mevalonate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H11O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00167e">
+            <rdf:Description rdf:about="#M_MAM00167e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/mev__R"/>
@@ -109232,10 +109284,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02173e" sboTerm="SBO:0000247" id="MAM02173e" name="inositol-1-phosphate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H11O9P">
+      <species metaid="M_MAM02173e" sboTerm="SBO:0000247" id="M_MAM02173e" name="inositol-1-phosphate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H11O9P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02173e">
+            <rdf:Description rdf:about="#M_MAM02173e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/mi1p__D"/>
@@ -109249,10 +109301,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02532e" sboTerm="SBO:0000247" id="MAM02532e" name="N-acetyl-L-aspartate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H7NO5">
+      <species metaid="M_MAM02532e" sboTerm="SBO:0000247" id="M_MAM02532e" name="N-acetyl-L-aspartate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H7NO5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02532e">
+            <rdf:Description rdf:about="#M_MAM02532e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/Nacasp"/>
@@ -109268,10 +109320,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02497e" sboTerm="SBO:0000247" id="MAM02497e" name="N-(omega)-hydroxyarginine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C6H15N4O3">
+      <species metaid="M_MAM02497e" sboTerm="SBO:0000247" id="M_MAM02497e" name="N-(omega)-hydroxyarginine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C6H15N4O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02497e">
+            <rdf:Description rdf:about="#M_MAM02497e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/nwharg"/>
@@ -109286,10 +109338,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03796e" sboTerm="SBO:0000247" id="MAM03796e" name="Oleoyl Ethanolamide" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H39NO2">
+      <species metaid="M_MAM03796e" sboTerm="SBO:0000247" id="M_MAM03796e" name="Oleoyl Ethanolamide" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H39NO2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03796e">
+            <rdf:Description rdf:about="#M_MAM03796e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/oleth"/>
@@ -109301,10 +109353,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02381e" sboTerm="SBO:0000247" id="MAM02381e" name="L-hydroxylysine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H14N2O3">
+      <species metaid="M_MAM02381e" sboTerm="SBO:0000247" id="M_MAM02381e" name="L-hydroxylysine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H14N2O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02381e">
+            <rdf:Description rdf:about="#M_MAM02381e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pcollg5hlys"/>
@@ -109321,10 +109373,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03857e" sboTerm="SBO:0000247" id="MAM03857e" name="Pentadecanoyl Thanolamide (C15:0)" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C17H35NO2">
+      <species metaid="M_MAM03857e" sboTerm="SBO:0000247" id="M_MAM03857e" name="Pentadecanoyl Thanolamide (C15:0)" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C17H35NO2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03857e">
+            <rdf:Description rdf:about="#M_MAM03857e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pendecaeth"/>
@@ -109336,10 +109388,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03885e" sboTerm="SBO:0000247" id="MAM03885e" name="Palmitoylethanolamide" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H37NO2">
+      <species metaid="M_MAM03885e" sboTerm="SBO:0000247" id="M_MAM03885e" name="Palmitoylethanolamide" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H37NO2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03885e">
+            <rdf:Description rdf:about="#M_MAM03885e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pmeth"/>
@@ -109351,10 +109403,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02868e" sboTerm="SBO:0000247" id="MAM02868e" name="saccharopine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C11H19N2O6">
+      <species metaid="M_MAM02868e" sboTerm="SBO:0000247" id="M_MAM02868e" name="saccharopine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C11H19N2O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02868e">
+            <rdf:Description rdf:about="#M_MAM02868e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/saccrp__L"/>
@@ -109369,10 +109421,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03923e" sboTerm="SBO:0000247" id="MAM03923e" name="Sebacicacid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C10H16O4">
+      <species metaid="M_MAM03923e" sboTerm="SBO:0000247" id="M_MAM03923e" name="Sebacicacid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C10H16O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03923e">
+            <rdf:Description rdf:about="#M_MAM03923e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/sebacid"/>
@@ -109388,10 +109440,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03936e" sboTerm="SBO:0000247" id="MAM03936e" name="Sm (D18:0/24:1), Sphingomyelin" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C47H96N2O6P">
+      <species metaid="M_MAM03936e" sboTerm="SBO:0000247" id="M_MAM03936e" name="Sm (D18:0/24:1), Sphingomyelin" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C47H96N2O6P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03936e">
+            <rdf:Description rdf:about="#M_MAM03936e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/sphmyln180241_hs"/>
@@ -109402,10 +109454,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03937e" sboTerm="SBO:0000247" id="MAM03937e" name="Sm (D18:1/14:0), Sphingomyelin" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C37H76N2O6P">
+      <species metaid="M_MAM03937e" sboTerm="SBO:0000247" id="M_MAM03937e" name="Sm (D18:1/14:0), Sphingomyelin" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C37H76N2O6P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03937e">
+            <rdf:Description rdf:about="#M_MAM03937e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/sphmyln18114_hs"/>
@@ -109416,10 +109468,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03938e" sboTerm="SBO:0000247" id="MAM03938e" name="Sm (D18:1/15:0), Sphingomyelin" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C38H78N2O6P">
+      <species metaid="M_MAM03938e" sboTerm="SBO:0000247" id="M_MAM03938e" name="Sm (D18:1/15:0), Sphingomyelin" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C38H78N2O6P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03938e">
+            <rdf:Description rdf:about="#M_MAM03938e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/sphmyln18115_hs"/>
@@ -109430,10 +109482,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03940e" sboTerm="SBO:0000247" id="MAM03940e" name="Sm (D18:1/16:0), Sphingomyelin" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C39H80N2O6P">
+      <species metaid="M_MAM03940e" sboTerm="SBO:0000247" id="M_MAM03940e" name="Sm (D18:1/16:0), Sphingomyelin" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C39H80N2O6P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03940e">
+            <rdf:Description rdf:about="#M_MAM03940e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/sphmyln18116_hs"/>
@@ -109444,10 +109496,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03939e" sboTerm="SBO:0000247" id="MAM03939e" name="Sm (D18:1/16:1), Sphingomyelin" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C39H78N2O6P">
+      <species metaid="M_MAM03939e" sboTerm="SBO:0000247" id="M_MAM03939e" name="Sm (D18:1/16:1), Sphingomyelin" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C39H78N2O6P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03939e">
+            <rdf:Description rdf:about="#M_MAM03939e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/sphmyln181161_hs"/>
@@ -109458,10 +109510,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03941e" sboTerm="SBO:0000247" id="MAM03941e" name="Sm (D18:1/17:0), Sphingomyelin" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C40H82N2O6P">
+      <species metaid="M_MAM03941e" sboTerm="SBO:0000247" id="M_MAM03941e" name="Sm (D18:1/17:0), Sphingomyelin" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C40H82N2O6P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03941e">
+            <rdf:Description rdf:about="#M_MAM03941e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/sphmyln18117_hs"/>
@@ -109472,10 +109524,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03943e" sboTerm="SBO:0000247" id="MAM03943e" name="Sm (D18:1/18:0), Sphingomyelin" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C41H84N2O6P">
+      <species metaid="M_MAM03943e" sboTerm="SBO:0000247" id="M_MAM03943e" name="Sm (D18:1/18:0), Sphingomyelin" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C41H84N2O6P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03943e">
+            <rdf:Description rdf:about="#M_MAM03943e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/sphmyln18118_hs"/>
@@ -109486,10 +109538,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03942e" sboTerm="SBO:0000247" id="MAM03942e" name="Sm (D18:1/18:1), Sphingomyelin" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C41H82N2O6P">
+      <species metaid="M_MAM03942e" sboTerm="SBO:0000247" id="M_MAM03942e" name="Sm (D18:1/18:1), Sphingomyelin" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C41H82N2O6P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03942e">
+            <rdf:Description rdf:about="#M_MAM03942e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/sphmyln181181_hs"/>
@@ -109500,10 +109552,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03945e" sboTerm="SBO:0000247" id="MAM03945e" name="Sm (D18:1/20:0), Sphingomyelin" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C43H88N2O6P">
+      <species metaid="M_MAM03945e" sboTerm="SBO:0000247" id="M_MAM03945e" name="Sm (D18:1/20:0), Sphingomyelin" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C43H88N2O6P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03945e">
+            <rdf:Description rdf:about="#M_MAM03945e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/sphmyln18120_hs"/>
@@ -109514,10 +109566,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03944e" sboTerm="SBO:0000247" id="MAM03944e" name="Sm (D18:1/20:1), Sphingomyelin" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C43H86N2O6P">
+      <species metaid="M_MAM03944e" sboTerm="SBO:0000247" id="M_MAM03944e" name="Sm (D18:1/20:1), Sphingomyelin" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C43H86N2O6P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03944e">
+            <rdf:Description rdf:about="#M_MAM03944e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/sphmyln181201_hs"/>
@@ -109528,10 +109580,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03946e" sboTerm="SBO:0000247" id="MAM03946e" name="Sm (D18:1/21:0), Sphingomyelin" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C44H90N2O6P">
+      <species metaid="M_MAM03946e" sboTerm="SBO:0000247" id="M_MAM03946e" name="Sm (D18:1/21:0), Sphingomyelin" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C44H90N2O6P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03946e">
+            <rdf:Description rdf:about="#M_MAM03946e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/sphmyln18121_hs"/>
@@ -109542,10 +109594,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03948e" sboTerm="SBO:0000247" id="MAM03948e" name="Sm (D18:1/22:0), Sphingomyelin" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C45H92N2O6P">
+      <species metaid="M_MAM03948e" sboTerm="SBO:0000247" id="M_MAM03948e" name="Sm (D18:1/22:0), Sphingomyelin" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C45H92N2O6P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03948e">
+            <rdf:Description rdf:about="#M_MAM03948e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/sphmyln18122_hs"/>
@@ -109556,10 +109608,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03947e" sboTerm="SBO:0000247" id="MAM03947e" name="Sm (D18:1/22:1), Sphingomyelin" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C45H90N2O6P">
+      <species metaid="M_MAM03947e" sboTerm="SBO:0000247" id="M_MAM03947e" name="Sm (D18:1/22:1), Sphingomyelin" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C45H90N2O6P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03947e">
+            <rdf:Description rdf:about="#M_MAM03947e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/sphmyln181221_hs"/>
@@ -109570,10 +109622,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03949e" sboTerm="SBO:0000247" id="MAM03949e" name="Sm (D18:1/23:0), Sphingomyelin" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C46H94N2O6P">
+      <species metaid="M_MAM03949e" sboTerm="SBO:0000247" id="M_MAM03949e" name="Sm (D18:1/23:0), Sphingomyelin" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C46H94N2O6P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03949e">
+            <rdf:Description rdf:about="#M_MAM03949e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/sphmyln18123_hs"/>
@@ -109584,10 +109636,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03950e" sboTerm="SBO:0000247" id="MAM03950e" name="Sm (D18:0/24:0), Sphingomyelin" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C47H98N2O6P">
+      <species metaid="M_MAM03950e" sboTerm="SBO:0000247" id="M_MAM03950e" name="Sm (D18:0/24:0), Sphingomyelin" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C47H98N2O6P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03950e">
+            <rdf:Description rdf:about="#M_MAM03950e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/sphmyln1824_hs"/>
@@ -109598,10 +109650,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03951e" sboTerm="SBO:0000247" id="MAM03951e" name="Sm (D18:0/25:0), Sphingomyelin" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C48H100N2O6P">
+      <species metaid="M_MAM03951e" sboTerm="SBO:0000247" id="M_MAM03951e" name="Sm (D18:0/25:0), Sphingomyelin" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C48H100N2O6P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03951e">
+            <rdf:Description rdf:about="#M_MAM03951e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/sphmyln1825_hs"/>
@@ -109612,10 +109664,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03953e" sboTerm="SBO:0000247" id="MAM03953e" name="Stearoyl Ethanolamide" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H41NO2">
+      <species metaid="M_MAM03953e" sboTerm="SBO:0000247" id="M_MAM03953e" name="Stearoyl Ethanolamide" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H41NO2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03953e">
+            <rdf:Description rdf:about="#M_MAM03953e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/steeth"/>
@@ -109627,10 +109679,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03954e" sboTerm="SBO:0000247" id="MAM03954e" name="Suberic Acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C8H12O4">
+      <species metaid="M_MAM03954e" sboTerm="SBO:0000247" id="M_MAM03954e" name="Suberic Acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C8H12O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03954e">
+            <rdf:Description rdf:about="#M_MAM03954e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/subeac"/>
@@ -109646,10 +109698,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03976e" sboTerm="SBO:0000247" id="MAM03976e" name="Cia-5,8, Tetradecadienoic Acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C14H23O2">
+      <species metaid="M_MAM03976e" sboTerm="SBO:0000247" id="M_MAM03976e" name="Cia-5,8, Tetradecadienoic Acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C14H23O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03976e">
+            <rdf:Description rdf:about="#M_MAM03976e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/tetdeca511ac"/>
@@ -109660,10 +109712,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03977e" sboTerm="SBO:0000247" id="MAM03977e" name="C14:0-Ethanolamide, Tetradecanoyl Ethanolamide" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C16H33NO2">
+      <species metaid="M_MAM03977e" sboTerm="SBO:0000247" id="M_MAM03977e" name="C14:0-Ethanolamide, Tetradecanoyl Ethanolamide" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C16H33NO2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03977e">
+            <rdf:Description rdf:about="#M_MAM03977e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/tetdecaeth"/>
@@ -109675,10 +109727,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02992e" sboTerm="SBO:0000247" id="MAM02992e" name="threonate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C4H7O5">
+      <species metaid="M_MAM02992e" sboTerm="SBO:0000247" id="M_MAM02992e" name="threonate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C4H7O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02992e">
+            <rdf:Description rdf:about="#M_MAM02992e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/thrnt"/>
@@ -109693,10 +109745,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02517e" sboTerm="SBO:0000247" id="MAM02517e" name="N6,N6,N6-trimethyl-L-lysine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H20N2O2">
+      <species metaid="M_MAM02517e" sboTerm="SBO:0000247" id="M_MAM02517e" name="N6,N6,N6-trimethyl-L-lysine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H20N2O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02517e">
+            <rdf:Description rdf:about="#M_MAM02517e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/tmlys"/>
@@ -109713,10 +109765,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM04006e" sboTerm="SBO:0000247" id="MAM04006e" name="Tridecanoyl Thanolamide (C13:0)" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C15H31NO2">
+      <species metaid="M_MAM04006e" sboTerm="SBO:0000247" id="M_MAM04006e" name="Tridecanoyl Thanolamide (C13:0)" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C15H31NO2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM04006e">
+            <rdf:Description rdf:about="#M_MAM04006e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/trideceth"/>
@@ -109728,10 +109780,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03124e" sboTerm="SBO:0000247" id="MAM03124e" name="urocanate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H5N2O2">
+      <species metaid="M_MAM03124e" sboTerm="SBO:0000247" id="M_MAM03124e" name="urocanate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H5N2O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03124e">
+            <rdf:Description rdf:about="#M_MAM03124e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/urcan"/>
@@ -109747,10 +109799,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM04076e" sboTerm="SBO:0000247" id="MAM04076e" name="1-Linoleoyl-Cholesterol, Cholesterol-Ester (18:2, Delta 9, 12)" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C45H76O2">
+      <species metaid="M_MAM04076e" sboTerm="SBO:0000247" id="M_MAM04076e" name="1-Linoleoyl-Cholesterol, Cholesterol-Ester (18:2, Delta 9, 12)" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C45H76O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM04076e">
+            <rdf:Description rdf:about="#M_MAM04076e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/xolest182_hs"/>
@@ -109762,10 +109814,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01909e" sboTerm="SBO:0000247" id="MAM01909e" name="galactitol" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H14O6">
+      <species metaid="M_MAM01909e" sboTerm="SBO:0000247" id="M_MAM01909e" name="galactitol" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H14O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01909e">
+            <rdf:Description rdf:about="#M_MAM01909e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/galt"/>
@@ -109782,10 +109834,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03619e" sboTerm="SBO:0000247" id="MAM03619e" name="Glycerol 2-Phosphate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C3H7O6P">
+      <species metaid="M_MAM03619e" sboTerm="SBO:0000247" id="M_MAM03619e" name="Glycerol 2-Phosphate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C3H7O6P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03619e">
+            <rdf:Description rdf:about="#M_MAM03619e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/glyc2p"/>
@@ -109797,10 +109849,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01998e" sboTerm="SBO:0000247" id="MAM01998e" name="glycolate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C2H3O3">
+      <species metaid="M_MAM01998e" sboTerm="SBO:0000247" id="M_MAM01998e" name="glycolate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C2H3O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01998e">
+            <rdf:Description rdf:about="#M_MAM01998e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/glyclt"/>
@@ -109816,10 +109868,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03232e" sboTerm="SBO:0000247" id="MAM03232e" name="3-(3-Hydroxy-Phenyl)Propionate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C9H9O3">
+      <species metaid="M_MAM03232e" sboTerm="SBO:0000247" id="M_MAM03232e" name="3-(3-Hydroxy-Phenyl)Propionate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C9H9O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03232e">
+            <rdf:Description rdf:about="#M_MAM03232e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/3hpppn"/>
@@ -109831,10 +109883,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03684m" sboTerm="SBO:0000247" id="MAM03684m" name="Hexanoate (N-C6:0)" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H11O2">
+      <species metaid="M_MAM03684m" sboTerm="SBO:0000247" id="M_MAM03684m" name="Hexanoate (N-C6:0)" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H11O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03684m">
+            <rdf:Description rdf:about="#M_MAM03684m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hxa"/>
@@ -109846,10 +109898,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03684x" sboTerm="SBO:0000247" id="MAM03684x" name="Hexanoate (N-C6:0)" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H11O2">
+      <species metaid="M_MAM03684x" sboTerm="SBO:0000247" id="M_MAM03684x" name="Hexanoate (N-C6:0)" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H11O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03684x">
+            <rdf:Description rdf:about="#M_MAM03684x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hxa"/>
@@ -109861,10 +109913,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02169e" sboTerm="SBO:0000247" id="MAM02169e" name="indoleacetate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H8NO2">
+      <species metaid="M_MAM02169e" sboTerm="SBO:0000247" id="M_MAM02169e" name="indoleacetate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H8NO2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02169e">
+            <rdf:Description rdf:about="#M_MAM02169e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ind3ac"/>
@@ -109880,10 +109932,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02350e" sboTerm="SBO:0000247" id="MAM02350e" name="L-cysteate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C3H6NO5S">
+      <species metaid="M_MAM02350e" sboTerm="SBO:0000247" id="M_MAM02350e" name="L-cysteate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C3H6NO5S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02350e">
+            <rdf:Description rdf:about="#M_MAM02350e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/Lcyst"/>
@@ -109899,10 +109951,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02413c" sboTerm="SBO:0000247" id="MAM02413c" name="L-pipecolate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H11NO2">
+      <species metaid="M_MAM02413c" sboTerm="SBO:0000247" id="M_MAM02413c" name="L-pipecolate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H11NO2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02413c">
+            <rdf:Description rdf:about="#M_MAM02413c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/Lpipecol"/>
@@ -109919,10 +109971,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02633e" sboTerm="SBO:0000247" id="MAM02633e" name="OAA" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C4H2O5">
+      <species metaid="M_MAM02633e" sboTerm="SBO:0000247" id="M_MAM02633e" name="OAA" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C4H2O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02633e">
+            <rdf:Description rdf:about="#M_MAM02633e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/oaa"/>
@@ -109938,10 +109990,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02720e" sboTerm="SBO:0000247" id="MAM02720e" name="phenylacetate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C8H7O2">
+      <species metaid="M_MAM02720e" sboTerm="SBO:0000247" id="M_MAM02720e" name="phenylacetate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C8H7O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02720e">
+            <rdf:Description rdf:about="#M_MAM02720e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pac"/>
@@ -109957,10 +110009,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00916e" sboTerm="SBO:0000247" id="MAM00916e" name="3-phosphoserine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C3H6NO6P">
+      <species metaid="M_MAM00916e" sboTerm="SBO:0000247" id="M_MAM00916e" name="3-phosphoserine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C3H6NO6P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00916e">
+            <rdf:Description rdf:about="#M_MAM00916e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pser__L"/>
@@ -109976,10 +110028,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02868c" sboTerm="SBO:0000247" id="MAM02868c" name="saccharopine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C11H19N2O6">
+      <species metaid="M_MAM02868c" sboTerm="SBO:0000247" id="M_MAM02868c" name="saccharopine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C11H19N2O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02868c">
+            <rdf:Description rdf:about="#M_MAM02868c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/saccrp__L"/>
@@ -109994,10 +110046,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03399m" sboTerm="SBO:0000247" id="MAM03399m" name="Acetyl Isoleucine (Chemspider Id: 9964364)" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C8H14NO3">
+      <species metaid="M_MAM03399m" sboTerm="SBO:0000247" id="M_MAM03399m" name="Acetyl Isoleucine (Chemspider Id: 9964364)" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C8H14NO3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03399m">
+            <rdf:Description rdf:about="#M_MAM03399m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/acile_L"/>
@@ -110007,10 +110059,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03399c" sboTerm="SBO:0000247" id="MAM03399c" name="Acetyl Isoleucine (Chemspider Id: 9964364)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C8H14NO3">
+      <species metaid="M_MAM03399c" sboTerm="SBO:0000247" id="M_MAM03399c" name="Acetyl Isoleucine (Chemspider Id: 9964364)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C8H14NO3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03399c">
+            <rdf:Description rdf:about="#M_MAM03399c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/acile_L"/>
@@ -110020,10 +110072,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03399e" sboTerm="SBO:0000247" id="MAM03399e" name="Acetyl Isoleucine (Chemspider Id: 9964364)" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C8H14NO3">
+      <species metaid="M_MAM03399e" sboTerm="SBO:0000247" id="M_MAM03399e" name="Acetyl Isoleucine (Chemspider Id: 9964364)" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C8H14NO3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03399e">
+            <rdf:Description rdf:about="#M_MAM03399e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/acile_L"/>
@@ -110033,10 +110085,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03400m" sboTerm="SBO:0000247" id="MAM03400m" name="N-Acetylleucine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C8H14NO3">
+      <species metaid="M_MAM03400m" sboTerm="SBO:0000247" id="M_MAM03400m" name="N-Acetylleucine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C8H14NO3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03400m">
+            <rdf:Description rdf:about="#M_MAM03400m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/acleu_L"/>
@@ -110046,10 +110098,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03400c" sboTerm="SBO:0000247" id="MAM03400c" name="N-Acetylleucine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C8H14NO3">
+      <species metaid="M_MAM03400c" sboTerm="SBO:0000247" id="M_MAM03400c" name="N-Acetylleucine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C8H14NO3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03400c">
+            <rdf:Description rdf:about="#M_MAM03400c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/acleu_L"/>
@@ -110059,10 +110111,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03400e" sboTerm="SBO:0000247" id="MAM03400e" name="N-Acetylleucine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C8H14NO3">
+      <species metaid="M_MAM03400e" sboTerm="SBO:0000247" id="M_MAM03400e" name="N-Acetylleucine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C8H14NO3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03400e">
+            <rdf:Description rdf:about="#M_MAM03400e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/acleu_L"/>
@@ -110072,10 +110124,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03398m" sboTerm="SBO:0000247" id="MAM03398m" name="Acetylhomoserine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H10NO4">
+      <species metaid="M_MAM03398m" sboTerm="SBO:0000247" id="M_MAM03398m" name="Acetylhomoserine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H10NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03398m">
+            <rdf:Description rdf:about="#M_MAM03398m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/achom_L"/>
@@ -110085,10 +110137,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03398c" sboTerm="SBO:0000247" id="MAM03398c" name="Acetylhomoserine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H10NO4">
+      <species metaid="M_MAM03398c" sboTerm="SBO:0000247" id="M_MAM03398c" name="Acetylhomoserine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H10NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03398c">
+            <rdf:Description rdf:about="#M_MAM03398c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/achom_L"/>
@@ -110098,10 +110150,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03398e" sboTerm="SBO:0000247" id="MAM03398e" name="Acetylhomoserine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H10NO4">
+      <species metaid="M_MAM03398e" sboTerm="SBO:0000247" id="M_MAM03398e" name="Acetylhomoserine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H10NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03398e">
+            <rdf:Description rdf:about="#M_MAM03398e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/achom_L"/>
@@ -110111,10 +110163,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03862e" sboTerm="SBO:0000247" id="MAM03862e" name="Phenylacetylglycine_phacgly" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H10NO3">
+      <species metaid="M_MAM03862e" sboTerm="SBO:0000247" id="M_MAM03862e" name="Phenylacetylglycine_phacgly" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H10NO3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03862e">
+            <rdf:Description rdf:about="#M_MAM03862e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/phacgly"/>
@@ -110125,10 +110177,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02136m" sboTerm="SBO:0000247" id="MAM02136m" name="homoserine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H9NO3">
+      <species metaid="M_MAM02136m" sboTerm="SBO:0000247" id="M_MAM02136m" name="homoserine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H9NO3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02136m">
+            <rdf:Description rdf:about="#M_MAM02136m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hom__L"/>
@@ -110145,10 +110197,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM04061c" sboTerm="SBO:0000247" id="MAM04061c" name="Ursodeoxycholyl Coenzyme A" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C45H70N7O19P3S">
+      <species metaid="M_MAM04061c" sboTerm="SBO:0000247" id="M_MAM04061c" name="Ursodeoxycholyl Coenzyme A" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C45H70N7O19P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM04061c">
+            <rdf:Description rdf:about="#M_MAM04061c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/urscholcoa"/>
@@ -110159,10 +110211,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03313c" sboTerm="SBO:0000247" id="MAM03313c" name="7-Ketolithocholate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H37O4">
+      <species metaid="M_MAM03313c" sboTerm="SBO:0000247" id="M_MAM03313c" name="7-Ketolithocholate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H37O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03313c">
+            <rdf:Description rdf:about="#M_MAM03313c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/7klitchol"/>
@@ -110173,10 +110225,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01380m" sboTerm="SBO:0000247" id="MAM01380m" name="benzoate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C7H5O2">
+      <species metaid="M_MAM01380m" sboTerm="SBO:0000247" id="M_MAM01380m" name="benzoate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C7H5O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01380m">
+            <rdf:Description rdf:about="#M_MAM01380m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/bz"/>
@@ -110190,10 +110242,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03485m" sboTerm="SBO:0000247" id="MAM03485m" name="Benzoyl Coenzyme A" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C28H36N7O17P3S">
+      <species metaid="M_MAM03485m" sboTerm="SBO:0000247" id="M_MAM03485m" name="Benzoyl Coenzyme A" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C28H36N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03485m">
+            <rdf:Description rdf:about="#M_MAM03485m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/bzcoa"/>
@@ -110204,10 +110256,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02123m" sboTerm="SBO:0000247" id="MAM02123m" name="hippurate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C9H8NO3">
+      <species metaid="M_MAM02123m" sboTerm="SBO:0000247" id="M_MAM02123m" name="hippurate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C9H8NO3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02123m">
+            <rdf:Description rdf:about="#M_MAM02123m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:18089"/>
@@ -110222,10 +110274,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02721m" sboTerm="SBO:0000247" id="MAM02721m" name="phenylacetyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C29H38N7O17P3S">
+      <species metaid="M_MAM02721m" sboTerm="SBO:0000247" id="M_MAM02721m" name="phenylacetyl-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C29H38N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02721m">
+            <rdf:Description rdf:about="#M_MAM02721m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/phaccoa"/>
@@ -110241,10 +110293,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02723m" sboTerm="SBO:0000247" id="MAM02723m" name="phenylacetylglycine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H10NO3">
+      <species metaid="M_MAM02723m" sboTerm="SBO:0000247" id="M_MAM02723m" name="phenylacetylglycine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H10NO3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02723m">
+            <rdf:Description rdf:about="#M_MAM02723m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pheacgly"/>
@@ -110257,10 +110309,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03836c" sboTerm="SBO:0000247" id="MAM03836c" name="P-Cresol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C7H7O">
+      <species metaid="M_MAM03836c" sboTerm="SBO:0000247" id="M_MAM03836c" name="P-Cresol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C7H7O">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03836c">
+            <rdf:Description rdf:about="#M_MAM03836c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pcresol"/>
@@ -110275,10 +110327,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03837c" sboTerm="SBO:0000247" id="MAM03837c" name="P-Cresol Sulfate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C7H7O4S">
+      <species metaid="M_MAM03837c" sboTerm="SBO:0000247" id="M_MAM03837c" name="P-Cresol Sulfate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C7H7O4S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03837c">
+            <rdf:Description rdf:about="#M_MAM03837c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pcs"/>
@@ -110291,10 +110343,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03701c" sboTerm="SBO:0000247" id="MAM03701c" name="Indole" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H7N">
+      <species metaid="M_MAM03701c" sboTerm="SBO:0000247" id="M_MAM03701c" name="Indole" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H7N">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03701c">
+            <rdf:Description rdf:about="#M_MAM03701c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/indole"/>
@@ -110307,10 +110359,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03702c" sboTerm="SBO:0000247" id="MAM03702c" name="Indoxyl" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C8H6NO">
+      <species metaid="M_MAM03702c" sboTerm="SBO:0000247" id="M_MAM03702c" name="Indoxyl" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C8H6NO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03702c">
+            <rdf:Description rdf:about="#M_MAM03702c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/indoxyl"/>
@@ -110320,10 +110372,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03703c" sboTerm="SBO:0000247" id="MAM03703c" name="Indoxyl Sulfate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C8H6NO4S">
+      <species metaid="M_MAM03703c" sboTerm="SBO:0000247" id="M_MAM03703c" name="Indoxyl Sulfate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C8H6NO4S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03703c">
+            <rdf:Description rdf:about="#M_MAM03703c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/inds"/>
@@ -110333,10 +110385,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03701e" sboTerm="SBO:0000247" id="MAM03701e" name="Indole" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H7N">
+      <species metaid="M_MAM03701e" sboTerm="SBO:0000247" id="M_MAM03701e" name="Indole" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H7N">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03701e">
+            <rdf:Description rdf:about="#M_MAM03701e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/indole"/>
@@ -110349,10 +110401,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03703e" sboTerm="SBO:0000247" id="MAM03703e" name="Indoxyl Sulfate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C8H6NO4S">
+      <species metaid="M_MAM03703e" sboTerm="SBO:0000247" id="M_MAM03703e" name="Indoxyl Sulfate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C8H6NO4S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03703e">
+            <rdf:Description rdf:about="#M_MAM03703e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/inds"/>
@@ -110362,10 +110414,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03836e" sboTerm="SBO:0000247" id="MAM03836e" name="P-Cresol" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C7H7O">
+      <species metaid="M_MAM03836e" sboTerm="SBO:0000247" id="M_MAM03836e" name="P-Cresol" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C7H7O">
         <annotation>
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-            <rdf:Description rdf:about="#MAM03836e">
+            <rdf:Description rdf:about="#M_MAM03836e">
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                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pcresol"/>
@@ -110380,10 +110432,10 @@
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-      <species metaid="MAM03837e" sboTerm="SBO:0000247" id="MAM03837e" name="P-Cresol Sulfate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C7H7O4S">
+      <species metaid="M_MAM03837e" sboTerm="SBO:0000247" id="M_MAM03837e" name="P-Cresol Sulfate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C7H7O4S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03837e">
+            <rdf:Description rdf:about="#M_MAM03837e">
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                 <rdf:Bag>
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@@ -110396,10 +110448,10 @@
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-      <species metaid="MAM03215e" sboTerm="SBO:0000247" id="MAM03215e" name="3-Hydroxycinnamic Acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C9H7O3">
+      <species metaid="M_MAM03215e" sboTerm="SBO:0000247" id="M_MAM03215e" name="3-Hydroxycinnamic Acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C9H7O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03215e">
+            <rdf:Description rdf:about="#M_MAM03215e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/3hcinnm"/>
@@ -110411,10 +110463,10 @@
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-      <species metaid="MAM03215c" sboTerm="SBO:0000247" id="MAM03215c" name="3-Hydroxycinnamic Acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C9H7O3">
+      <species metaid="M_MAM03215c" sboTerm="SBO:0000247" id="M_MAM03215c" name="3-Hydroxycinnamic Acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C9H7O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03215c">
+            <rdf:Description rdf:about="#M_MAM03215c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/3hcinnm"/>
@@ -110426,10 +110478,10 @@
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-      <species metaid="MAM03231e" sboTerm="SBO:0000247" id="MAM03231e" name="3-Hydroxyphenylpropionic Acid (3-Hppa)" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C9H9O3">
+      <species metaid="M_MAM03231e" sboTerm="SBO:0000247" id="M_MAM03231e" name="3-Hydroxyphenylpropionic Acid (3-Hppa)" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C9H9O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03231e">
+            <rdf:Description rdf:about="#M_MAM03231e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/3hppa"/>
@@ -110439,10 +110491,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM03231c" sboTerm="SBO:0000247" id="MAM03231c" name="3-Hydroxyphenylpropionic Acid (3-Hppa)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C9H9O3">
+      <species metaid="M_MAM03231c" sboTerm="SBO:0000247" id="M_MAM03231c" name="3-Hydroxyphenylpropionic Acid (3-Hppa)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C9H9O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03231c">
+            <rdf:Description rdf:about="#M_MAM03231c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:57277"/>
@@ -110453,10 +110505,10 @@
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-      <species metaid="MAM02622e" sboTerm="SBO:0000247" id="MAM02622e" name="normetanephrine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C9H14NO3">
+      <species metaid="M_MAM02622e" sboTerm="SBO:0000247" id="M_MAM02622e" name="normetanephrine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C9H14NO3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02622e">
+            <rdf:Description rdf:about="#M_MAM02622e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/normete__L"/>
@@ -110472,10 +110524,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM00400e" sboTerm="SBO:0000247" id="MAM00400e" name="16alpha-hydroxyestrone" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H22O3">
+      <species metaid="M_MAM00400e" sboTerm="SBO:0000247" id="M_MAM00400e" name="16alpha-hydroxyestrone" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H22O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00400e">
+            <rdf:Description rdf:about="#M_MAM00400e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:776"/>
@@ -110492,10 +110544,10 @@
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         </annotation>
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-      <species metaid="MAM01698e" sboTerm="SBO:0000247" id="MAM01698e" name="dihydrobiopterin" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H13N5O3">
+      <species metaid="M_MAM01698e" sboTerm="SBO:0000247" id="M_MAM01698e" name="dihydrobiopterin" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H13N5O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01698e">
+            <rdf:Description rdf:about="#M_MAM01698e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dhbpt"/>
@@ -110511,10 +110563,10 @@
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         </annotation>
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-      <species metaid="MAM02978e" sboTerm="SBO:0000247" id="MAM02978e" name="tetrahydrobiopterin" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H15N5O3">
+      <species metaid="M_MAM02978e" sboTerm="SBO:0000247" id="M_MAM02978e" name="tetrahydrobiopterin" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H15N5O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02978e">
+            <rdf:Description rdf:about="#M_MAM02978e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/thbpt"/>
@@ -110530,10 +110582,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM03411e" sboTerm="SBO:0000247" id="MAM03411e" name="Alanyl-Arginyl-Cysteine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C12H25N6O4S">
+      <species metaid="M_MAM03411e" sboTerm="SBO:0000247" id="M_MAM03411e" name="Alanyl-Arginyl-Cysteine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C12H25N6O4S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03411e">
+            <rdf:Description rdf:about="#M_MAM03411e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/alaargcys"/>
@@ -110544,10 +110596,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03412e" sboTerm="SBO:0000247" id="MAM03412e" name="Alanyl-Arginyl-Glycine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C11H23N6O4">
+      <species metaid="M_MAM03412e" sboTerm="SBO:0000247" id="M_MAM03412e" name="Alanyl-Arginyl-Glycine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C11H23N6O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03412e">
+            <rdf:Description rdf:about="#M_MAM03412e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/alaarggly"/>
@@ -110558,10 +110610,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM03413e" sboTerm="SBO:0000247" id="MAM03413e" name="Alanyl-Asparaginyl-Leucine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C13H24N4O5">
+      <species metaid="M_MAM03413e" sboTerm="SBO:0000247" id="M_MAM03413e" name="Alanyl-Asparaginyl-Leucine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C13H24N4O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03413e">
+            <rdf:Description rdf:about="#M_MAM03413e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/alaasnleu"/>
@@ -110573,10 +110625,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03414e" sboTerm="SBO:0000247" id="MAM03414e" name="Alanyl-Glycyl-Lysine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="C11H23N4O4">
+      <species metaid="M_MAM03414e" sboTerm="SBO:0000247" id="M_MAM03414e" name="Alanyl-Glycyl-Lysine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="C11H23N4O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03414e">
+            <rdf:Description rdf:about="#M_MAM03414e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/alaglylys"/>
@@ -110587,10 +110639,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03415e" sboTerm="SBO:0000247" id="MAM03415e" name="Alanyl-Histidyl-Alanine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C12H19N5O4">
+      <species metaid="M_MAM03415e" sboTerm="SBO:0000247" id="M_MAM03415e" name="Alanyl-Histidyl-Alanine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C12H19N5O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03415e">
+            <rdf:Description rdf:about="#M_MAM03415e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/alahisala"/>
@@ -110602,10 +110654,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03416e" sboTerm="SBO:0000247" id="MAM03416e" name="Alanyl-Lysine-Threonine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C13H27N4O5">
+      <species metaid="M_MAM03416e" sboTerm="SBO:0000247" id="M_MAM03416e" name="Alanyl-Lysine-Threonine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C13H27N4O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03416e">
+            <rdf:Description rdf:about="#M_MAM03416e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/alalysthr"/>
@@ -110616,10 +110668,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03435e" sboTerm="SBO:0000247" id="MAM03435e" name="Arginyl-Alanyl-Alanine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C12H25N6O4">
+      <species metaid="M_MAM03435e" sboTerm="SBO:0000247" id="M_MAM03435e" name="Arginyl-Alanyl-Alanine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C12H25N6O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03435e">
+            <rdf:Description rdf:about="#M_MAM03435e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/argalaala"/>
@@ -110630,10 +110682,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03436e" sboTerm="SBO:0000247" id="MAM03436e" name="Arginyl-Alanine-Phenylalanine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C18H29N6O4">
+      <species metaid="M_MAM03436e" sboTerm="SBO:0000247" id="M_MAM03436e" name="Arginyl-Alanine-Phenylalanine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C18H29N6O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03436e">
+            <rdf:Description rdf:about="#M_MAM03436e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/argalaphe"/>
@@ -110644,10 +110696,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03437e" sboTerm="SBO:0000247" id="MAM03437e" name="Arginyl-Alanyl-Threonine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C13H27N6O5">
+      <species metaid="M_MAM03437e" sboTerm="SBO:0000247" id="M_MAM03437e" name="Arginyl-Alanyl-Threonine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C13H27N6O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03437e">
+            <rdf:Description rdf:about="#M_MAM03437e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/argalathr"/>
@@ -110658,10 +110710,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03438e" sboTerm="SBO:0000247" id="MAM03438e" name="Arginyl-Arginine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="C12H28N8O3">
+      <species metaid="M_MAM03438e" sboTerm="SBO:0000247" id="M_MAM03438e" name="Arginyl-Arginine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="C12H28N8O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03438e">
+            <rdf:Description rdf:about="#M_MAM03438e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/argarg"/>
@@ -110672,10 +110724,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03439e" sboTerm="SBO:0000247" id="MAM03439e" name="Arginyl-Arginyl-Lysine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="3" fbc:chemicalFormula="C18H41N10O4">
+      <species metaid="M_MAM03439e" sboTerm="SBO:0000247" id="M_MAM03439e" name="Arginyl-Arginyl-Lysine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="3" fbc:chemicalFormula="C18H41N10O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03439e">
+            <rdf:Description rdf:about="#M_MAM03439e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/argarglys"/>
@@ -110686,10 +110738,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03440e" sboTerm="SBO:0000247" id="MAM03440e" name="Arginyl-Arginyl-Metheonine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="C17H37N9O4S">
+      <species metaid="M_MAM03440e" sboTerm="SBO:0000247" id="M_MAM03440e" name="Arginyl-Arginyl-Metheonine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="C17H37N9O4S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03440e">
+            <rdf:Description rdf:about="#M_MAM03440e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/argargmet"/>
@@ -110700,10 +110752,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03441e" sboTerm="SBO:0000247" id="MAM03441e" name="Arginyl-Cystinyl-Glycine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C11H23N6O4S">
+      <species metaid="M_MAM03441e" sboTerm="SBO:0000247" id="M_MAM03441e" name="Arginyl-Cystinyl-Glycine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C11H23N6O4S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03441e">
+            <rdf:Description rdf:about="#M_MAM03441e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/argcysgly"/>
@@ -110714,10 +110766,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03442e" sboTerm="SBO:0000247" id="MAM03442e" name="Arginyl-Cystinyl-Serine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C12H25N6O5S">
+      <species metaid="M_MAM03442e" sboTerm="SBO:0000247" id="M_MAM03442e" name="Arginyl-Cystinyl-Serine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C12H25N6O5S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03442e">
+            <rdf:Description rdf:about="#M_MAM03442e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/argcysser"/>
@@ -110728,10 +110780,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03443e" sboTerm="SBO:0000247" id="MAM03443e" name="Arginyl-Glutamyl-Glutamate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C16H27N6O8">
+      <species metaid="M_MAM03443e" sboTerm="SBO:0000247" id="M_MAM03443e" name="Arginyl-Glutamyl-Glutamate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C16H27N6O8">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03443e">
+            <rdf:Description rdf:about="#M_MAM03443e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/arggluglu"/>
@@ -110742,10 +110794,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03444e" sboTerm="SBO:0000247" id="MAM03444e" name="Arginyl-Glutamyl-Proline" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C16H28N6O6">
+      <species metaid="M_MAM03444e" sboTerm="SBO:0000247" id="M_MAM03444e" name="Arginyl-Glutamyl-Proline" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C16H28N6O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03444e">
+            <rdf:Description rdf:about="#M_MAM03444e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/argglupro"/>
@@ -110757,10 +110809,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03445e" sboTerm="SBO:0000247" id="MAM03445e" name="Arginyl-Glycyl-Glycine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C10H21N6O4">
+      <species metaid="M_MAM03445e" sboTerm="SBO:0000247" id="M_MAM03445e" name="Arginyl-Glycyl-Glycine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C10H21N6O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03445e">
+            <rdf:Description rdf:about="#M_MAM03445e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/argglygly"/>
@@ -110771,10 +110823,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03446e" sboTerm="SBO:0000247" id="MAM03446e" name="Arginyl-Histidyl-Threonine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C16H29N8O5">
+      <species metaid="M_MAM03446e" sboTerm="SBO:0000247" id="M_MAM03446e" name="Arginyl-Histidyl-Threonine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C16H29N8O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03446e">
+            <rdf:Description rdf:about="#M_MAM03446e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/arghisthr"/>
@@ -110785,10 +110837,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03447e" sboTerm="SBO:0000247" id="MAM03447e" name="Arginyl-Leucyl-Phenylalanine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C21H35N6O4">
+      <species metaid="M_MAM03447e" sboTerm="SBO:0000247" id="M_MAM03447e" name="Arginyl-Leucyl-Phenylalanine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C21H35N6O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03447e">
+            <rdf:Description rdf:about="#M_MAM03447e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/argleuphe"/>
@@ -110799,10 +110851,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03448e" sboTerm="SBO:0000247" id="MAM03448e" name="Arginyl-Lysyl-Aspartate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C16H32N7O6">
+      <species metaid="M_MAM03448e" sboTerm="SBO:0000247" id="M_MAM03448e" name="Arginyl-Lysyl-Aspartate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C16H32N7O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03448e">
+            <rdf:Description rdf:about="#M_MAM03448e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/arglysasp"/>
@@ -110813,10 +110865,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03449e" sboTerm="SBO:0000247" id="MAM03449e" name="Arginyl-Phenylalanine-Arginine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="C21H37N9O4">
+      <species metaid="M_MAM03449e" sboTerm="SBO:0000247" id="M_MAM03449e" name="Arginyl-Phenylalanine-Arginine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="C21H37N9O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03449e">
+            <rdf:Description rdf:about="#M_MAM03449e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/argphearg"/>
@@ -110827,10 +110879,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03450e" sboTerm="SBO:0000247" id="MAM03450e" name="Arginyl-Prolyl-Methionine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C16H31N6O4S">
+      <species metaid="M_MAM03450e" sboTerm="SBO:0000247" id="M_MAM03450e" name="Arginyl-Prolyl-Methionine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C16H31N6O4S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03450e">
+            <rdf:Description rdf:about="#M_MAM03450e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/argpromet"/>
@@ -110841,10 +110893,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03451e" sboTerm="SBO:0000247" id="MAM03451e" name="Arginyl-Prolyl-Threonine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C15H29N6O5">
+      <species metaid="M_MAM03451e" sboTerm="SBO:0000247" id="M_MAM03451e" name="Arginyl-Prolyl-Threonine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C15H29N6O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03451e">
+            <rdf:Description rdf:about="#M_MAM03451e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/argprothr"/>
@@ -110855,10 +110907,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03452e" sboTerm="SBO:0000247" id="MAM03452e" name="Arginyl-Seryl-Serine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C12H25N6O6">
+      <species metaid="M_MAM03452e" sboTerm="SBO:0000247" id="M_MAM03452e" name="Arginyl-Seryl-Serine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C12H25N6O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03452e">
+            <rdf:Description rdf:about="#M_MAM03452e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/argserser"/>
@@ -110869,10 +110921,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03453e" sboTerm="SBO:0000247" id="MAM03453e" name="Argtyrval" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C20H33N6O5">
+      <species metaid="M_MAM03453e" sboTerm="SBO:0000247" id="M_MAM03453e" name="Argtyrval" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C20H33N6O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03453e">
+            <rdf:Description rdf:about="#M_MAM03453e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/argtyrval"/>
@@ -110883,10 +110935,10 @@
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-      <species metaid="MAM03454e" sboTerm="SBO:0000247" id="MAM03454e" name="Arginyl-Valyl-Cysteine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C14H29N6O4S">
+      <species metaid="M_MAM03454e" sboTerm="SBO:0000247" id="M_MAM03454e" name="Arginyl-Valyl-Cysteine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C14H29N6O4S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03454e">
+            <rdf:Description rdf:about="#M_MAM03454e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/argvalcys"/>
@@ -110897,10 +110949,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03455e" sboTerm="SBO:0000247" id="MAM03455e" name="Arginyl-Valyl-Tryptophan" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C22H34N7O4">
+      <species metaid="M_MAM03455e" sboTerm="SBO:0000247" id="M_MAM03455e" name="Arginyl-Valyl-Tryptophan" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C22H34N7O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03455e">
+            <rdf:Description rdf:about="#M_MAM03455e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/argvaltrp"/>
@@ -110911,10 +110963,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03456e" sboTerm="SBO:0000247" id="MAM03456e" name="Asparaginyl-Asparaginyl-Arginine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C14H27N8O6">
+      <species metaid="M_MAM03456e" sboTerm="SBO:0000247" id="M_MAM03456e" name="Asparaginyl-Asparaginyl-Arginine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C14H27N8O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03456e">
+            <rdf:Description rdf:about="#M_MAM03456e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/asnasnarg"/>
@@ -110925,10 +110977,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03457e" sboTerm="SBO:0000247" id="MAM03457e" name="Asparaginyl-Cysteinyl-Cysteine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H18N4O5S2">
+      <species metaid="M_MAM03457e" sboTerm="SBO:0000247" id="M_MAM03457e" name="Asparaginyl-Cysteinyl-Cysteine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H18N4O5S2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03457e">
+            <rdf:Description rdf:about="#M_MAM03457e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/asncyscys"/>
@@ -110940,10 +110992,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03458e" sboTerm="SBO:0000247" id="MAM03458e" name="Asparaginyl-Methionyl-Proline" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C14H24N4O5S">
+      <species metaid="M_MAM03458e" sboTerm="SBO:0000247" id="M_MAM03458e" name="Asparaginyl-Methionyl-Proline" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C14H24N4O5S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03458e">
+            <rdf:Description rdf:about="#M_MAM03458e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/asnmetpro"/>
@@ -110955,10 +111007,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03459e" sboTerm="SBO:0000247" id="MAM03459e" name="Asparaginyl-Phenylalanyl-Aspartate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C17H21N4O7">
+      <species metaid="M_MAM03459e" sboTerm="SBO:0000247" id="M_MAM03459e" name="Asparaginyl-Phenylalanyl-Aspartate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C17H21N4O7">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03459e">
+            <rdf:Description rdf:about="#M_MAM03459e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/asnpheasp"/>
@@ -110969,10 +111021,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03460e" sboTerm="SBO:0000247" id="MAM03460e" name="Asparaginyl-Phenylalanyl-Cysteine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C16H22N4O5S">
+      <species metaid="M_MAM03460e" sboTerm="SBO:0000247" id="M_MAM03460e" name="Asparaginyl-Phenylalanyl-Cysteine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C16H22N4O5S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03460e">
+            <rdf:Description rdf:about="#M_MAM03460e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/asnphecys"/>
@@ -110984,10 +111036,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03461e" sboTerm="SBO:0000247" id="MAM03461e" name="Asparaginyl-Tyrosyl-Glycine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C15H20N4O6">
+      <species metaid="M_MAM03461e" sboTerm="SBO:0000247" id="M_MAM03461e" name="Asparaginyl-Tyrosyl-Glycine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C15H20N4O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03461e">
+            <rdf:Description rdf:about="#M_MAM03461e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/asntyrgly"/>
@@ -110999,10 +111051,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03462e" sboTerm="SBO:0000247" id="MAM03462e" name="Asparaginyl-Tyrosyl-Phenylalanine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C22H26N4O6">
+      <species metaid="M_MAM03462e" sboTerm="SBO:0000247" id="M_MAM03462e" name="Asparaginyl-Tyrosyl-Phenylalanine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C22H26N4O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03462e">
+            <rdf:Description rdf:about="#M_MAM03462e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/asntyrphe"/>
@@ -111014,10 +111066,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03463e" sboTerm="SBO:0000247" id="MAM03463e" name="Asparaginyl-Tyrosyl-Threonine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C17H24N4O7">
+      <species metaid="M_MAM03463e" sboTerm="SBO:0000247" id="M_MAM03463e" name="Asparaginyl-Tyrosyl-Threonine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C17H24N4O7">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03463e">
+            <rdf:Description rdf:about="#M_MAM03463e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/asntyrthr"/>
@@ -111029,10 +111081,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03464e" sboTerm="SBO:0000247" id="MAM03464e" name="Asparaginyl-Alanyl-Arginine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C13H24N6O6">
+      <species metaid="M_MAM03464e" sboTerm="SBO:0000247" id="M_MAM03464e" name="Asparaginyl-Alanyl-Arginine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C13H24N6O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03464e">
+            <rdf:Description rdf:about="#M_MAM03464e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/aspalaarg"/>
@@ -111044,10 +111096,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03465e" sboTerm="SBO:0000247" id="MAM03465e" name="Aspartyl-Asparaginyl-Glutamate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C13H18N4O9">
+      <species metaid="M_MAM03465e" sboTerm="SBO:0000247" id="M_MAM03465e" name="Aspartyl-Asparaginyl-Glutamate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C13H18N4O9">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03465e">
+            <rdf:Description rdf:about="#M_MAM03465e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/aspasnglu"/>
@@ -111058,10 +111110,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03466e" sboTerm="SBO:0000247" id="MAM03466e" name="Aspartyl-Glutamate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C9H12N2O7">
+      <species metaid="M_MAM03466e" sboTerm="SBO:0000247" id="M_MAM03466e" name="Aspartyl-Glutamate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C9H12N2O7">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03466e">
+            <rdf:Description rdf:about="#M_MAM03466e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/aspglu"/>
@@ -111072,10 +111124,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03467e" sboTerm="SBO:0000247" id="MAM03467e" name="Aspartyl-Glutamyl-Proline" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C14H19N3O8">
+      <species metaid="M_MAM03467e" sboTerm="SBO:0000247" id="M_MAM03467e" name="Aspartyl-Glutamyl-Proline" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C14H19N3O8">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03467e">
+            <rdf:Description rdf:about="#M_MAM03467e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/aspglupro"/>
@@ -111086,10 +111138,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03468e" sboTerm="SBO:0000247" id="MAM03468e" name="Aspartyl-Glutamyl-Tryptophan" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C20H22N4O8">
+      <species metaid="M_MAM03468e" sboTerm="SBO:0000247" id="M_MAM03468e" name="Aspartyl-Glutamyl-Tryptophan" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C20H22N4O8">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03468e">
+            <rdf:Description rdf:about="#M_MAM03468e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/aspglutrp"/>
@@ -111100,10 +111152,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03469e" sboTerm="SBO:0000247" id="MAM03469e" name="Aspartyl-Histidyl-Cysteine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C13H18N5O6S">
+      <species metaid="M_MAM03469e" sboTerm="SBO:0000247" id="M_MAM03469e" name="Aspartyl-Histidyl-Cysteine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C13H18N5O6S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03469e">
+            <rdf:Description rdf:about="#M_MAM03469e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/asphiscys"/>
@@ -111114,10 +111166,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03470e" sboTerm="SBO:0000247" id="MAM03470e" name="Aspartyl-Histidyl-Proline" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C15H20N5O6">
+      <species metaid="M_MAM03470e" sboTerm="SBO:0000247" id="M_MAM03470e" name="Aspartyl-Histidyl-Proline" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C15H20N5O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03470e">
+            <rdf:Description rdf:about="#M_MAM03470e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/asphispro"/>
@@ -111128,10 +111180,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03471e" sboTerm="SBO:0000247" id="MAM03471e" name="Aspartyl-Lysyl-Glutamate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C15H25N4O8">
+      <species metaid="M_MAM03471e" sboTerm="SBO:0000247" id="M_MAM03471e" name="Aspartyl-Lysyl-Glutamate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C15H25N4O8">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03471e">
+            <rdf:Description rdf:about="#M_MAM03471e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/asplysglu"/>
@@ -111142,10 +111194,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03472e" sboTerm="SBO:0000247" id="MAM03472e" name="Aspartyl-Lysyl-Histidine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C16H26N6O6">
+      <species metaid="M_MAM03472e" sboTerm="SBO:0000247" id="M_MAM03472e" name="Aspartyl-Lysyl-Histidine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C16H26N6O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03472e">
+            <rdf:Description rdf:about="#M_MAM03472e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/asplyshis"/>
@@ -111157,10 +111209,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03473e" sboTerm="SBO:0000247" id="MAM03473e" name="Aspartyl-Methionyl-Aspartate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C13H19N3O8S">
+      <species metaid="M_MAM03473e" sboTerm="SBO:0000247" id="M_MAM03473e" name="Aspartyl-Methionyl-Aspartate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C13H19N3O8S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03473e">
+            <rdf:Description rdf:about="#M_MAM03473e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/aspmetasp"/>
@@ -111171,10 +111223,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03474e" sboTerm="SBO:0000247" id="MAM03474e" name="Aspartyl-Prolyl-Lysine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C15H26N4O6">
+      <species metaid="M_MAM03474e" sboTerm="SBO:0000247" id="M_MAM03474e" name="Aspartyl-Prolyl-Lysine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C15H26N4O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03474e">
+            <rdf:Description rdf:about="#M_MAM03474e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/aspprolys"/>
@@ -111186,10 +111238,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03475e" sboTerm="SBO:0000247" id="MAM03475e" name="Aspartyl-Valyl-Asparagine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C13H21N4O7">
+      <species metaid="M_MAM03475e" sboTerm="SBO:0000247" id="M_MAM03475e" name="Aspartyl-Valyl-Asparagine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C13H21N4O7">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03475e">
+            <rdf:Description rdf:about="#M_MAM03475e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/aspvalasn"/>
@@ -111200,10 +111252,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03527e" sboTerm="SBO:0000247" id="MAM03527e" name="Cystyl-Asparaginyl-Methionine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C12H22N4O5S2">
+      <species metaid="M_MAM03527e" sboTerm="SBO:0000247" id="M_MAM03527e" name="Cystyl-Asparaginyl-Methionine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C12H22N4O5S2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03527e">
+            <rdf:Description rdf:about="#M_MAM03527e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/cysasnmet"/>
@@ -111215,10 +111267,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03528e" sboTerm="SBO:0000247" id="MAM03528e" name="Cystyl-Aspartyl-Phenylalanine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C16H20N3O6S">
+      <species metaid="M_MAM03528e" sboTerm="SBO:0000247" id="M_MAM03528e" name="Cystyl-Aspartyl-Phenylalanine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C16H20N3O6S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03528e">
+            <rdf:Description rdf:about="#M_MAM03528e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/cysaspphe"/>
@@ -111229,10 +111281,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03529e" sboTerm="SBO:0000247" id="MAM03529e" name="Cystyl-Cysteine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H12N2O3S2">
+      <species metaid="M_MAM03529e" sboTerm="SBO:0000247" id="M_MAM03529e" name="Cystyl-Cysteine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H12N2O3S2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03529e">
+            <rdf:Description rdf:about="#M_MAM03529e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/cyscys"/>
@@ -111244,10 +111296,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03530e" sboTerm="SBO:0000247" id="MAM03530e" name="Cystyl-Glutaminyl-Methionine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C13H24N4O5S2">
+      <species metaid="M_MAM03530e" sboTerm="SBO:0000247" id="M_MAM03530e" name="Cystyl-Glutaminyl-Methionine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C13H24N4O5S2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03530e">
+            <rdf:Description rdf:about="#M_MAM03530e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/cysglnmet"/>
@@ -111259,10 +111311,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03531e" sboTerm="SBO:0000247" id="MAM03531e" name="Cystyl-Glutamyl-Histidine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C14H20N5O6S">
+      <species metaid="M_MAM03531e" sboTerm="SBO:0000247" id="M_MAM03531e" name="Cystyl-Glutamyl-Histidine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C14H20N5O6S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03531e">
+            <rdf:Description rdf:about="#M_MAM03531e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/cysgluhis"/>
@@ -111273,10 +111325,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03532e" sboTerm="SBO:0000247" id="MAM03532e" name="Cystyl-Glutamyl-Tryptophan" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C19H23N4O6S">
+      <species metaid="M_MAM03532e" sboTerm="SBO:0000247" id="M_MAM03532e" name="Cystyl-Glutamyl-Tryptophan" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C19H23N4O6S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03532e">
+            <rdf:Description rdf:about="#M_MAM03532e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/cysglutrp"/>
@@ -111287,10 +111339,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03533e" sboTerm="SBO:0000247" id="MAM03533e" name="Cystyl-Leucyl-Threonine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C13H25N3O5S">
+      <species metaid="M_MAM03533e" sboTerm="SBO:0000247" id="M_MAM03533e" name="Cystyl-Leucyl-Threonine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C13H25N3O5S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03533e">
+            <rdf:Description rdf:about="#M_MAM03533e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/cysleuthr"/>
@@ -111302,10 +111354,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03534e" sboTerm="SBO:0000247" id="MAM03534e" name="Cystyl-Seryl-Methionine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C11H21N3O5S2">
+      <species metaid="M_MAM03534e" sboTerm="SBO:0000247" id="M_MAM03534e" name="Cystyl-Seryl-Methionine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C11H21N3O5S2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03534e">
+            <rdf:Description rdf:about="#M_MAM03534e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/cyssermet"/>
@@ -111317,10 +111369,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03535e" sboTerm="SBO:0000247" id="MAM03535e" name="Cystyl-Tyrosyl-Asparagine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C16H22N4O6S">
+      <species metaid="M_MAM03535e" sboTerm="SBO:0000247" id="M_MAM03535e" name="Cystyl-Tyrosyl-Asparagine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C16H22N4O6S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03535e">
+            <rdf:Description rdf:about="#M_MAM03535e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/cystyrasn"/>
@@ -111332,10 +111384,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03596e" sboTerm="SBO:0000247" id="MAM03596e" name="Glutaminyl-Asparaginyl-Glutamine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C14H24N6O7">
+      <species metaid="M_MAM03596e" sboTerm="SBO:0000247" id="M_MAM03596e" name="Glutaminyl-Asparaginyl-Glutamine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C14H24N6O7">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03596e">
+            <rdf:Description rdf:about="#M_MAM03596e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/glnasngln"/>
@@ -111347,10 +111399,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03597e" sboTerm="SBO:0000247" id="MAM03597e" name="Glutaminyl-Histidyl-Histidine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C17H24N8O5">
+      <species metaid="M_MAM03597e" sboTerm="SBO:0000247" id="M_MAM03597e" name="Glutaminyl-Histidyl-Histidine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C17H24N8O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03597e">
+            <rdf:Description rdf:about="#M_MAM03597e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/glnhishis"/>
@@ -111362,10 +111414,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03598e" sboTerm="SBO:0000247" id="MAM03598e" name="Glutaminyl-Histidyl-Lysine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C17H30N7O5">
+      <species metaid="M_MAM03598e" sboTerm="SBO:0000247" id="M_MAM03598e" name="Glutaminyl-Histidyl-Lysine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C17H30N7O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03598e">
+            <rdf:Description rdf:about="#M_MAM03598e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/glnhislys"/>
@@ -111376,10 +111428,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03599e" sboTerm="SBO:0000247" id="MAM03599e" name="Glutaminyl-Lysyl-Lysine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C17H36N6O5">
+      <species metaid="M_MAM03599e" sboTerm="SBO:0000247" id="M_MAM03599e" name="Glutaminyl-Lysyl-Lysine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C17H36N6O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03599e">
+            <rdf:Description rdf:about="#M_MAM03599e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/glnlyslys"/>
@@ -111390,10 +111442,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03600e" sboTerm="SBO:0000247" id="MAM03600e" name="Glutaminyl-Lysyl-Tryptophan" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C22H33N6O5">
+      <species metaid="M_MAM03600e" sboTerm="SBO:0000247" id="M_MAM03600e" name="Glutaminyl-Lysyl-Tryptophan" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C22H33N6O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03600e">
+            <rdf:Description rdf:about="#M_MAM03600e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/glnlystrp"/>
@@ -111404,10 +111456,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03601e" sboTerm="SBO:0000247" id="MAM03601e" name="Glutaminyl-Prolyl-Glutamate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C15H23N4O7">
+      <species metaid="M_MAM03601e" sboTerm="SBO:0000247" id="M_MAM03601e" name="Glutaminyl-Prolyl-Glutamate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C15H23N4O7">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03601e">
+            <rdf:Description rdf:about="#M_MAM03601e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/glnproglu"/>
@@ -111418,10 +111470,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03602e" sboTerm="SBO:0000247" id="MAM03602e" name="Glutaminyl-Tryptophanyl-Glutamate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C21H26N5O7">
+      <species metaid="M_MAM03602e" sboTerm="SBO:0000247" id="M_MAM03602e" name="Glutaminyl-Tryptophanyl-Glutamate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C21H26N5O7">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03602e">
+            <rdf:Description rdf:about="#M_MAM03602e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/glntrpglu"/>
@@ -111432,10 +111484,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03603e" sboTerm="SBO:0000247" id="MAM03603e" name="Glutaminyl-Tyrosyl-Leucine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H30N4O6">
+      <species metaid="M_MAM03603e" sboTerm="SBO:0000247" id="M_MAM03603e" name="Glutaminyl-Tyrosyl-Leucine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H30N4O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03603e">
+            <rdf:Description rdf:about="#M_MAM03603e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/glntyrleu"/>
@@ -111447,10 +111499,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03606e" sboTerm="SBO:0000247" id="MAM03606e" name="Glutaminyl-Arginyl-Leucine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C17H32N6O6">
+      <species metaid="M_MAM03606e" sboTerm="SBO:0000247" id="M_MAM03606e" name="Glutaminyl-Arginyl-Leucine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C17H32N6O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03606e">
+            <rdf:Description rdf:about="#M_MAM03606e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/gluargleu"/>
@@ -111462,10 +111514,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03607e" sboTerm="SBO:0000247" id="MAM03607e" name="Glutaminyl-Asparaginyl-Leucine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C15H25N4O7">
+      <species metaid="M_MAM03607e" sboTerm="SBO:0000247" id="M_MAM03607e" name="Glutaminyl-Asparaginyl-Leucine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C15H25N4O7">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03607e">
+            <rdf:Description rdf:about="#M_MAM03607e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/gluasnleu"/>
@@ -111476,10 +111528,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03608e" sboTerm="SBO:0000247" id="MAM03608e" name="Glutamyl-Glutamate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C10H14N2O7">
+      <species metaid="M_MAM03608e" sboTerm="SBO:0000247" id="M_MAM03608e" name="Glutamyl-Glutamate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C10H14N2O7">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03608e">
+            <rdf:Description rdf:about="#M_MAM03608e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/gluglu"/>
@@ -111490,10 +111542,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03609e" sboTerm="SBO:0000247" id="MAM03609e" name="Glutamyl-Isoleucyl-Lysine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C17H32N4O6">
+      <species metaid="M_MAM03609e" sboTerm="SBO:0000247" id="M_MAM03609e" name="Glutamyl-Isoleucyl-Lysine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C17H32N4O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03609e">
+            <rdf:Description rdf:about="#M_MAM03609e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/gluilelys"/>
@@ -111505,10 +111557,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03610e" sboTerm="SBO:0000247" id="MAM03610e" name="Glutamyl-Leucine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C11H19N2O5">
+      <species metaid="M_MAM03610e" sboTerm="SBO:0000247" id="M_MAM03610e" name="Glutamyl-Leucine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C11H19N2O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03610e">
+            <rdf:Description rdf:about="#M_MAM03610e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/gluleu"/>
@@ -111519,10 +111571,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03611e" sboTerm="SBO:0000247" id="MAM03611e" name="Glutamyl-Methionine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H17N2O5S">
+      <species metaid="M_MAM03611e" sboTerm="SBO:0000247" id="M_MAM03611e" name="Glutamyl-Methionine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H17N2O5S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03611e">
+            <rdf:Description rdf:about="#M_MAM03611e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/glumet"/>
@@ -111533,10 +111585,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03612e" sboTerm="SBO:0000247" id="MAM03612e" name="Glutamyl-Methioninyl-Histidine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C16H24N5O6S">
+      <species metaid="M_MAM03612e" sboTerm="SBO:0000247" id="M_MAM03612e" name="Glutamyl-Methioninyl-Histidine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C16H24N5O6S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03612e">
+            <rdf:Description rdf:about="#M_MAM03612e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/glumethis"/>
@@ -111547,10 +111599,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03616e" sboTerm="SBO:0000247" id="MAM03616e" name="Glutamyl-Threonine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C9H15N2O6">
+      <species metaid="M_MAM03616e" sboTerm="SBO:0000247" id="M_MAM03616e" name="Glutamyl-Threonine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C9H15N2O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03616e">
+            <rdf:Description rdf:about="#M_MAM03616e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/gluthr"/>
@@ -111561,10 +111613,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03617e" sboTerm="SBO:0000247" id="MAM03617e" name="Glutamyl-Threonyl-Lysine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C15H28N4O7">
+      <species metaid="M_MAM03617e" sboTerm="SBO:0000247" id="M_MAM03617e" name="Glutamyl-Threonyl-Lysine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C15H28N4O7">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03617e">
+            <rdf:Description rdf:about="#M_MAM03617e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/gluthrlys"/>
@@ -111576,10 +111628,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03618e" sboTerm="SBO:0000247" id="MAM03618e" name="Glutamyl-Tryptophanyl-Alanine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C19H23N4O6">
+      <species metaid="M_MAM03618e" sboTerm="SBO:0000247" id="M_MAM03618e" name="Glutamyl-Tryptophanyl-Alanine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C19H23N4O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03618e">
+            <rdf:Description rdf:about="#M_MAM03618e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/glutrpala"/>
@@ -111590,10 +111642,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03624e" sboTerm="SBO:0000247" id="MAM03624e" name="Glycyl-Histidyl-Asparagine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C12H18N6O5">
+      <species metaid="M_MAM03624e" sboTerm="SBO:0000247" id="M_MAM03624e" name="Glycyl-Histidyl-Asparagine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C12H18N6O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03624e">
+            <rdf:Description rdf:about="#M_MAM03624e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/glyhisasn"/>
@@ -111605,10 +111657,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03625e" sboTerm="SBO:0000247" id="MAM03625e" name="Glycyl-Histidyl-Lysine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C14H25N6O4">
+      <species metaid="M_MAM03625e" sboTerm="SBO:0000247" id="M_MAM03625e" name="Glycyl-Histidyl-Lysine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C14H25N6O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03625e">
+            <rdf:Description rdf:about="#M_MAM03625e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/glyhislys"/>
@@ -111619,10 +111671,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03627e" sboTerm="SBO:0000247" id="MAM03627e" name="Glycyl-Lysyl-Cysteine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C11H23N4O4S">
+      <species metaid="M_MAM03627e" sboTerm="SBO:0000247" id="M_MAM03627e" name="Glycyl-Lysyl-Cysteine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C11H23N4O4S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03627e">
+            <rdf:Description rdf:about="#M_MAM03627e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/glylyscys"/>
@@ -111633,10 +111685,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03628e" sboTerm="SBO:0000247" id="MAM03628e" name="Glycyl-Lysyl-Phenylalanine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C17H27N4O4">
+      <species metaid="M_MAM03628e" sboTerm="SBO:0000247" id="M_MAM03628e" name="Glycyl-Lysyl-Phenylalanine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C17H27N4O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03628e">
+            <rdf:Description rdf:about="#M_MAM03628e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/glylysphe"/>
@@ -111647,10 +111699,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03632e" sboTerm="SBO:0000247" id="MAM03632e" name="Glycyl-Tyrosyl-Lysine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C17H27N4O5">
+      <species metaid="M_MAM03632e" sboTerm="SBO:0000247" id="M_MAM03632e" name="Glycyl-Tyrosyl-Lysine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C17H27N4O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03632e">
+            <rdf:Description rdf:about="#M_MAM03632e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/glytyrlys"/>
@@ -111661,10 +111713,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03633e" sboTerm="SBO:0000247" id="MAM03633e" name="Glycyl-Valyl-Histidine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C13H21N5O4">
+      <species metaid="M_MAM03633e" sboTerm="SBO:0000247" id="M_MAM03633e" name="Glycyl-Valyl-Histidine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C13H21N5O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03633e">
+            <rdf:Description rdf:about="#M_MAM03633e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/glyvalhis"/>
@@ -111676,10 +111728,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03662e" sboTerm="SBO:0000247" id="MAM03662e" name="Histidyl-Arginyl-Cysteine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C15H27N8O4S">
+      <species metaid="M_MAM03662e" sboTerm="SBO:0000247" id="M_MAM03662e" name="Histidyl-Arginyl-Cysteine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C15H27N8O4S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03662e">
+            <rdf:Description rdf:about="#M_MAM03662e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hisargcys"/>
@@ -111690,10 +111742,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03663e" sboTerm="SBO:0000247" id="MAM03663e" name="Histidyl-Arginyl-Serine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C15H27N8O5">
+      <species metaid="M_MAM03663e" sboTerm="SBO:0000247" id="M_MAM03663e" name="Histidyl-Arginyl-Serine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C15H27N8O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03663e">
+            <rdf:Description rdf:about="#M_MAM03663e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hisargser"/>
@@ -111704,10 +111756,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03664e" sboTerm="SBO:0000247" id="MAM03664e" name="Histidyl-Aspartate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H13N4O5">
+      <species metaid="M_MAM03664e" sboTerm="SBO:0000247" id="M_MAM03664e" name="Histidyl-Aspartate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H13N4O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03664e">
+            <rdf:Description rdf:about="#M_MAM03664e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hisasp"/>
@@ -111718,10 +111770,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03665e" sboTerm="SBO:0000247" id="MAM03665e" name="Histidyl-Cystyl-Cysteine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C12H19N5O4S2">
+      <species metaid="M_MAM03665e" sboTerm="SBO:0000247" id="M_MAM03665e" name="Histidyl-Cystyl-Cysteine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C12H19N5O4S2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03665e">
+            <rdf:Description rdf:about="#M_MAM03665e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hiscyscys"/>
@@ -111733,10 +111785,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03666e" sboTerm="SBO:0000247" id="MAM03666e" name="Histidyl-Glutaminyl-Alanine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C14H22N6O5">
+      <species metaid="M_MAM03666e" sboTerm="SBO:0000247" id="M_MAM03666e" name="Histidyl-Glutaminyl-Alanine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C14H22N6O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03666e">
+            <rdf:Description rdf:about="#M_MAM03666e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hisglnala"/>
@@ -111748,10 +111800,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03667e" sboTerm="SBO:0000247" id="MAM03667e" name="Histidyl-Glutamate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C11H15N4O5">
+      <species metaid="M_MAM03667e" sboTerm="SBO:0000247" id="M_MAM03667e" name="Histidyl-Glutamate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C11H15N4O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03667e">
+            <rdf:Description rdf:about="#M_MAM03667e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hisglu"/>
@@ -111762,10 +111814,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03668e" sboTerm="SBO:0000247" id="MAM03668e" name="Histidyl-Glutamyl-Glutamine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C16H23N6O7">
+      <species metaid="M_MAM03668e" sboTerm="SBO:0000247" id="M_MAM03668e" name="Histidyl-Glutamyl-Glutamine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C16H23N6O7">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03668e">
+            <rdf:Description rdf:about="#M_MAM03668e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hisglugln"/>
@@ -111776,10 +111828,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03669e" sboTerm="SBO:0000247" id="MAM03669e" name="Histidyl-Lysyl-Lysine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C14H25N6O4">
+      <species metaid="M_MAM03669e" sboTerm="SBO:0000247" id="M_MAM03669e" name="Histidyl-Lysyl-Lysine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C14H25N6O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03669e">
+            <rdf:Description rdf:about="#M_MAM03669e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hisglylys"/>
@@ -111790,10 +111842,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03670e" sboTerm="SBO:0000247" id="MAM03670e" name="Histidyl-Histidyl-Lysine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C18H29N8O4">
+      <species metaid="M_MAM03670e" sboTerm="SBO:0000247" id="M_MAM03670e" name="Histidyl-Histidyl-Lysine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C18H29N8O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03670e">
+            <rdf:Description rdf:about="#M_MAM03670e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hishislys"/>
@@ -111804,10 +111856,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03671e" sboTerm="SBO:0000247" id="MAM03671e" name="Histidyl-Lysyl-Alanine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C15H27N6O4">
+      <species metaid="M_MAM03671e" sboTerm="SBO:0000247" id="M_MAM03671e" name="Histidyl-Lysyl-Alanine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C15H27N6O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03671e">
+            <rdf:Description rdf:about="#M_MAM03671e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hislysala"/>
@@ -111818,10 +111870,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03672e" sboTerm="SBO:0000247" id="MAM03672e" name="Histidyl-Lysyl-Glutamate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C17H28N6O6">
+      <species metaid="M_MAM03672e" sboTerm="SBO:0000247" id="M_MAM03672e" name="Histidyl-Lysyl-Glutamate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C17H28N6O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03672e">
+            <rdf:Description rdf:about="#M_MAM03672e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hislysglu"/>
@@ -111833,10 +111885,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03673e" sboTerm="SBO:0000247" id="MAM03673e" name="Histidyl-Lysyl-Isoleucine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C18H33N6O4">
+      <species metaid="M_MAM03673e" sboTerm="SBO:0000247" id="M_MAM03673e" name="Histidyl-Lysyl-Isoleucine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C18H33N6O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03673e">
+            <rdf:Description rdf:about="#M_MAM03673e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hislysile"/>
@@ -111847,10 +111899,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03674e" sboTerm="SBO:0000247" id="MAM03674e" name="Histidyl-Lysyl-Threonine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C16H29N6O5">
+      <species metaid="M_MAM03674e" sboTerm="SBO:0000247" id="M_MAM03674e" name="Histidyl-Lysyl-Threonine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C16H29N6O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03674e">
+            <rdf:Description rdf:about="#M_MAM03674e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hislysthr"/>
@@ -111861,10 +111913,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03675e" sboTerm="SBO:0000247" id="MAM03675e" name="Histidyl-Lysyl-Valine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C17H31N6O4">
+      <species metaid="M_MAM03675e" sboTerm="SBO:0000247" id="M_MAM03675e" name="Histidyl-Lysyl-Valine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C17H31N6O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03675e">
+            <rdf:Description rdf:about="#M_MAM03675e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hislysval"/>
@@ -111875,10 +111927,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03676e" sboTerm="SBO:0000247" id="MAM03676e" name="Histidyl-Methionine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C11H18N4O3S">
+      <species metaid="M_MAM03676e" sboTerm="SBO:0000247" id="M_MAM03676e" name="Histidyl-Methionine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C11H18N4O3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03676e">
+            <rdf:Description rdf:about="#M_MAM03676e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hismet"/>
@@ -111890,10 +111942,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03677e" sboTerm="SBO:0000247" id="MAM03677e" name="Histidyl-Methionyl-Glutamine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C16H26N6O5S">
+      <species metaid="M_MAM03677e" sboTerm="SBO:0000247" id="M_MAM03677e" name="Histidyl-Methionyl-Glutamine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C16H26N6O5S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03677e">
+            <rdf:Description rdf:about="#M_MAM03677e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hismetgln"/>
@@ -111905,10 +111957,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03678e" sboTerm="SBO:0000247" id="MAM03678e" name="Histidyl-Phenylalanyl-Arginine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C21H31N8O4">
+      <species metaid="M_MAM03678e" sboTerm="SBO:0000247" id="M_MAM03678e" name="Histidyl-Phenylalanyl-Arginine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C21H31N8O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03678e">
+            <rdf:Description rdf:about="#M_MAM03678e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hisphearg"/>
@@ -111919,10 +111971,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03679e" sboTerm="SBO:0000247" id="MAM03679e" name="Histidyl-Prolyl-Lysine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C17H29N6O4">
+      <species metaid="M_MAM03679e" sboTerm="SBO:0000247" id="M_MAM03679e" name="Histidyl-Prolyl-Lysine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C17H29N6O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03679e">
+            <rdf:Description rdf:about="#M_MAM03679e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hisprolys"/>
@@ -111933,10 +111985,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03680e" sboTerm="SBO:0000247" id="MAM03680e" name="Histidyl-Tryptophanyl-Histidine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H26N8O4">
+      <species metaid="M_MAM03680e" sboTerm="SBO:0000247" id="M_MAM03680e" name="Histidyl-Tryptophanyl-Histidine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H26N8O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03680e">
+            <rdf:Description rdf:about="#M_MAM03680e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/histrphis"/>
@@ -111948,10 +112000,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03693e" sboTerm="SBO:0000247" id="MAM03693e" name="Isoleucyl-Arginyl-Isoleucine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C18H37N6O4">
+      <species metaid="M_MAM03693e" sboTerm="SBO:0000247" id="M_MAM03693e" name="Isoleucyl-Arginyl-Isoleucine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C18H37N6O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03693e">
+            <rdf:Description rdf:about="#M_MAM03693e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ileargile"/>
@@ -111962,10 +112014,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03694e" sboTerm="SBO:0000247" id="MAM03694e" name="Isoleucyl-Asparaginyl-Histidine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C16H26N6O5">
+      <species metaid="M_MAM03694e" sboTerm="SBO:0000247" id="M_MAM03694e" name="Isoleucyl-Asparaginyl-Histidine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C16H26N6O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03694e">
+            <rdf:Description rdf:about="#M_MAM03694e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ileasnhis"/>
@@ -111977,10 +112029,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03695e" sboTerm="SBO:0000247" id="MAM03695e" name="Isolecyl-Aspartate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H17N2O5">
+      <species metaid="M_MAM03695e" sboTerm="SBO:0000247" id="M_MAM03695e" name="Isolecyl-Aspartate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H17N2O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03695e">
+            <rdf:Description rdf:about="#M_MAM03695e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ileasp"/>
@@ -111991,10 +112043,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03696e" sboTerm="SBO:0000247" id="MAM03696e" name="Isolecyl-Glutaminyl-Glutamate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C16H27N4O7">
+      <species metaid="M_MAM03696e" sboTerm="SBO:0000247" id="M_MAM03696e" name="Isolecyl-Glutaminyl-Glutamate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C16H27N4O7">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03696e">
+            <rdf:Description rdf:about="#M_MAM03696e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ileglnglu"/>
@@ -112005,10 +112057,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03697e" sboTerm="SBO:0000247" id="MAM03697e" name="Isolecyl-Glycyl-Arginine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C14H29N6O4">
+      <species metaid="M_MAM03697e" sboTerm="SBO:0000247" id="M_MAM03697e" name="Isolecyl-Glycyl-Arginine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C14H29N6O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03697e">
+            <rdf:Description rdf:about="#M_MAM03697e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ileglyarg"/>
@@ -112019,10 +112071,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03698e" sboTerm="SBO:0000247" id="MAM03698e" name="Isolecyl-Prolyl-Lysine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C17H33N4O4">
+      <species metaid="M_MAM03698e" sboTerm="SBO:0000247" id="M_MAM03698e" name="Isolecyl-Prolyl-Lysine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C17H33N4O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03698e">
+            <rdf:Description rdf:about="#M_MAM03698e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ileprolys"/>
@@ -112033,10 +112085,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03699e" sboTerm="SBO:0000247" id="MAM03699e" name="Isolecyl-Seryl-Arginine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C15H31N6O5">
+      <species metaid="M_MAM03699e" sboTerm="SBO:0000247" id="M_MAM03699e" name="Isolecyl-Seryl-Arginine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C15H31N6O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03699e">
+            <rdf:Description rdf:about="#M_MAM03699e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ileserarg"/>
@@ -112047,10 +112099,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03700e" sboTerm="SBO:0000247" id="MAM03700e" name="Isolecyl-Tryptophanyl-Tyrosine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C26H32N4O5">
+      <species metaid="M_MAM03700e" sboTerm="SBO:0000247" id="M_MAM03700e" name="Isolecyl-Tryptophanyl-Tyrosine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C26H32N4O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03700e">
+            <rdf:Description rdf:about="#M_MAM03700e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/iletrptyr"/>
@@ -112062,10 +112114,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03711e" sboTerm="SBO:0000247" id="MAM03711e" name="Leucyl-Alanyl-Arginine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C15H31N6O4">
+      <species metaid="M_MAM03711e" sboTerm="SBO:0000247" id="M_MAM03711e" name="Leucyl-Alanyl-Arginine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C15H31N6O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03711e">
+            <rdf:Description rdf:about="#M_MAM03711e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/leualaarg"/>
@@ -112076,10 +112128,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03712e" sboTerm="SBO:0000247" id="MAM03712e" name="Leucyl-Asparaginyl-Aspartate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C14H23N4O7">
+      <species metaid="M_MAM03712e" sboTerm="SBO:0000247" id="M_MAM03712e" name="Leucyl-Asparaginyl-Aspartate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C14H23N4O7">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03712e">
+            <rdf:Description rdf:about="#M_MAM03712e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/leuasnasp"/>
@@ -112090,10 +112142,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03713e" sboTerm="SBO:0000247" id="MAM03713e" name="Leucyl-Aspartyl-Lysine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C16H30N4O6">
+      <species metaid="M_MAM03713e" sboTerm="SBO:0000247" id="M_MAM03713e" name="Leucyl-Aspartyl-Lysine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C16H30N4O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03713e">
+            <rdf:Description rdf:about="#M_MAM03713e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/leuasplys"/>
@@ -112105,10 +112157,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03716e" sboTerm="SBO:0000247" id="MAM03716e" name="Leucyl-Leucyl-Tryptophan" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H34N4O4">
+      <species metaid="M_MAM03716e" sboTerm="SBO:0000247" id="M_MAM03716e" name="Leucyl-Leucyl-Tryptophan" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H34N4O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03716e">
+            <rdf:Description rdf:about="#M_MAM03716e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/leuleutrp"/>
@@ -112120,10 +112172,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03717e" sboTerm="SBO:0000247" id="MAM03717e" name="Leucyl-Proline" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C11H20N2O3">
+      <species metaid="M_MAM03717e" sboTerm="SBO:0000247" id="M_MAM03717e" name="Leucyl-Proline" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C11H20N2O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03717e">
+            <rdf:Description rdf:about="#M_MAM03717e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/leupro"/>
@@ -112135,10 +112187,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03718e" sboTerm="SBO:0000247" id="MAM03718e" name="Leucyl-Prolyl-Arginine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C17H33N6O4">
+      <species metaid="M_MAM03718e" sboTerm="SBO:0000247" id="M_MAM03718e" name="Leucyl-Prolyl-Arginine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C17H33N6O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03718e">
+            <rdf:Description rdf:about="#M_MAM03718e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/leuproarg"/>
@@ -112149,10 +112201,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03719e" sboTerm="SBO:0000247" id="MAM03719e" name="Leucyl-Seryl-Tryptophan" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H28N4O5">
+      <species metaid="M_MAM03719e" sboTerm="SBO:0000247" id="M_MAM03719e" name="Leucyl-Seryl-Tryptophan" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H28N4O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03719e">
+            <rdf:Description rdf:about="#M_MAM03719e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/leusertrp"/>
@@ -112164,10 +112216,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03720e" sboTerm="SBO:0000247" id="MAM03720e" name="Leucyl-Tryptophan" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C17H23N3O3">
+      <species metaid="M_MAM03720e" sboTerm="SBO:0000247" id="M_MAM03720e" name="Leucyl-Tryptophan" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C17H23N3O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03720e">
+            <rdf:Description rdf:about="#M_MAM03720e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/leutrp"/>
@@ -112179,10 +112231,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03721e" sboTerm="SBO:0000247" id="MAM03721e" name="Leucyl-Tryptophanyl-Arginine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C23H36N7O4">
+      <species metaid="M_MAM03721e" sboTerm="SBO:0000247" id="M_MAM03721e" name="Leucyl-Tryptophanyl-Arginine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C23H36N7O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03721e">
+            <rdf:Description rdf:about="#M_MAM03721e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/leutrparg"/>
@@ -112193,10 +112245,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03722e" sboTerm="SBO:0000247" id="MAM03722e" name="Leucyl-Tyrosyl-Tyrosine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C24H31N3O6">
+      <species metaid="M_MAM03722e" sboTerm="SBO:0000247" id="M_MAM03722e" name="Leucyl-Tyrosyl-Tyrosine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C24H31N3O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03722e">
+            <rdf:Description rdf:about="#M_MAM03722e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/leutyrtyr"/>
@@ -112208,10 +112260,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03723e" sboTerm="SBO:0000247" id="MAM03723e" name="Leucyl-Valine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C11H22N2O3">
+      <species metaid="M_MAM03723e" sboTerm="SBO:0000247" id="M_MAM03723e" name="Leucyl-Valine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C11H22N2O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03723e">
+            <rdf:Description rdf:about="#M_MAM03723e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/leuval"/>
@@ -112223,10 +112275,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03738e" sboTerm="SBO:0000247" id="MAM03738e" name="Lysyl-Arginyl-Leucine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="C18H38N7O4">
+      <species metaid="M_MAM03738e" sboTerm="SBO:0000247" id="M_MAM03738e" name="Lysyl-Arginyl-Leucine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="C18H38N7O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03738e">
+            <rdf:Description rdf:about="#M_MAM03738e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/lysargleu"/>
@@ -112237,10 +112289,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03739e" sboTerm="SBO:0000247" id="MAM03739e" name="Lysyl-Cysteinyl-Histidine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C15H27N6O4S">
+      <species metaid="M_MAM03739e" sboTerm="SBO:0000247" id="M_MAM03739e" name="Lysyl-Cysteinyl-Histidine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C15H27N6O4S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03739e">
+            <rdf:Description rdf:about="#M_MAM03739e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/lyscyshis"/>
@@ -112251,10 +112303,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03740e" sboTerm="SBO:0000247" id="MAM03740e" name="Lysyl-Glutaminyl-Phenylalanine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C20H32N5O5">
+      <species metaid="M_MAM03740e" sboTerm="SBO:0000247" id="M_MAM03740e" name="Lysyl-Glutaminyl-Phenylalanine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C20H32N5O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03740e">
+            <rdf:Description rdf:about="#M_MAM03740e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/lysglnphe"/>
@@ -112265,10 +112317,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03741e" sboTerm="SBO:0000247" id="MAM03741e" name="Lysyl-Glutamyl-Glutamate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C16H27N4O8">
+      <species metaid="M_MAM03741e" sboTerm="SBO:0000247" id="M_MAM03741e" name="Lysyl-Glutamyl-Glutamate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C16H27N4O8">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03741e">
+            <rdf:Description rdf:about="#M_MAM03741e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/lysgluglu"/>
@@ -112279,10 +112331,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03742e" sboTerm="SBO:0000247" id="MAM03742e" name="Lysyl-Lysyl-Lysine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="3" fbc:chemicalFormula="C18H41N6O4">
+      <species metaid="M_MAM03742e" sboTerm="SBO:0000247" id="M_MAM03742e" name="Lysyl-Lysyl-Lysine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="3" fbc:chemicalFormula="C18H41N6O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03742e">
+            <rdf:Description rdf:about="#M_MAM03742e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/lyslyslys"/>
@@ -112293,10 +112345,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03743e" sboTerm="SBO:0000247" id="MAM03743e" name="Lysyl-Phenylalanyl-Isoleucine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C21H35N4O4">
+      <species metaid="M_MAM03743e" sboTerm="SBO:0000247" id="M_MAM03743e" name="Lysyl-Phenylalanyl-Isoleucine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C21H35N4O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03743e">
+            <rdf:Description rdf:about="#M_MAM03743e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/lyspheile"/>
@@ -112307,10 +112359,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03744e" sboTerm="SBO:0000247" id="MAM03744e" name="Lysyl-Tryptophanyl-Arginine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="C23H38N8O4">
+      <species metaid="M_MAM03744e" sboTerm="SBO:0000247" id="M_MAM03744e" name="Lysyl-Tryptophanyl-Arginine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="C23H38N8O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03744e">
+            <rdf:Description rdf:about="#M_MAM03744e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/lystrparg"/>
@@ -112321,10 +112373,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03745e" sboTerm="SBO:0000247" id="MAM03745e" name="Lysyl-Tyrosyl-Isoleucine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C21H35N4O5">
+      <species metaid="M_MAM03745e" sboTerm="SBO:0000247" id="M_MAM03745e" name="Lysyl-Tyrosyl-Isoleucine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C21H35N4O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03745e">
+            <rdf:Description rdf:about="#M_MAM03745e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/lystyrile"/>
@@ -112335,10 +112387,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03746e" sboTerm="SBO:0000247" id="MAM03746e" name="Lysyl-Valyl-Phenylalanine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C20H33N4O4">
+      <species metaid="M_MAM03746e" sboTerm="SBO:0000247" id="M_MAM03746e" name="Lysyl-Valyl-Phenylalanine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C20H33N4O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03746e">
+            <rdf:Description rdf:about="#M_MAM03746e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/lysvalphe"/>
@@ -112349,10 +112401,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03747e" sboTerm="SBO:0000247" id="MAM03747e" name="Lysyl-Valyl-Tryptophan" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C22H34N5O4">
+      <species metaid="M_MAM03747e" sboTerm="SBO:0000247" id="M_MAM03747e" name="Lysyl-Valyl-Tryptophan" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C22H34N5O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03747e">
+            <rdf:Description rdf:about="#M_MAM03747e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/lysvaltrp"/>
@@ -112363,10 +112415,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03760e" sboTerm="SBO:0000247" id="MAM03760e" name="Methionyl-Arginyl-Leucine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C17H35N6O4S">
+      <species metaid="M_MAM03760e" sboTerm="SBO:0000247" id="M_MAM03760e" name="Methionyl-Arginyl-Leucine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C17H35N6O4S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03760e">
+            <rdf:Description rdf:about="#M_MAM03760e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/metargleu"/>
@@ -112377,10 +112429,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03761e" sboTerm="SBO:0000247" id="MAM03761e" name="Methionyl-Asparaginyl-Tyrosine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H26N4O6S">
+      <species metaid="M_MAM03761e" sboTerm="SBO:0000247" id="M_MAM03761e" name="Methionyl-Asparaginyl-Tyrosine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H26N4O6S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03761e">
+            <rdf:Description rdf:about="#M_MAM03761e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/metasntyr"/>
@@ -112392,10 +112444,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03762e" sboTerm="SBO:0000247" id="MAM03762e" name="Methionyl-Glutaminyl-Tyrosine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H28N4O6S">
+      <species metaid="M_MAM03762e" sboTerm="SBO:0000247" id="M_MAM03762e" name="Methionyl-Glutaminyl-Tyrosine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H28N4O6S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03762e">
+            <rdf:Description rdf:about="#M_MAM03762e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/metglntyr"/>
@@ -112407,10 +112459,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03763e" sboTerm="SBO:0000247" id="MAM03763e" name="Methionyl-Glycyl-Arginine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C13H27N6O4S">
+      <species metaid="M_MAM03763e" sboTerm="SBO:0000247" id="M_MAM03763e" name="Methionyl-Glycyl-Arginine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C13H27N6O4S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03763e">
+            <rdf:Description rdf:about="#M_MAM03763e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/metglyarg"/>
@@ -112421,10 +112473,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03764e" sboTerm="SBO:0000247" id="MAM03764e" name="Methionyl-Histidyl-Lysine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C17H31N6O4S">
+      <species metaid="M_MAM03764e" sboTerm="SBO:0000247" id="M_MAM03764e" name="Methionyl-Histidyl-Lysine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C17H31N6O4S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03764e">
+            <rdf:Description rdf:about="#M_MAM03764e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/methislys"/>
@@ -112435,10 +112487,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03767e" sboTerm="SBO:0000247" id="MAM03767e" name="Methionyl-Methionyl-Isoleucine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C16H31N3O4S2">
+      <species metaid="M_MAM03767e" sboTerm="SBO:0000247" id="M_MAM03767e" name="Methionyl-Methionyl-Isoleucine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C16H31N3O4S2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03767e">
+            <rdf:Description rdf:about="#M_MAM03767e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/metmetile"/>
@@ -112450,10 +112502,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03768e" sboTerm="SBO:0000247" id="MAM03768e" name="Methionyl-Phenylalanyl-Arginine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C20H33N6O4S">
+      <species metaid="M_MAM03768e" sboTerm="SBO:0000247" id="M_MAM03768e" name="Methionyl-Phenylalanyl-Arginine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C20H33N6O4S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03768e">
+            <rdf:Description rdf:about="#M_MAM03768e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/metphearg"/>
@@ -112464,10 +112516,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03769e" sboTerm="SBO:0000247" id="MAM03769e" name="Methionyl-Tryptophanyl-Phenylalanine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H30N4O4S">
+      <species metaid="M_MAM03769e" sboTerm="SBO:0000247" id="M_MAM03769e" name="Methionyl-Tryptophanyl-Phenylalanine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H30N4O4S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03769e">
+            <rdf:Description rdf:about="#M_MAM03769e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/mettrpphe"/>
@@ -112479,10 +112531,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03864e" sboTerm="SBO:0000247" id="MAM03864e" name="Phenylalanyl-Asparaginyl-Methionine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H26N4O5S">
+      <species metaid="M_MAM03864e" sboTerm="SBO:0000247" id="M_MAM03864e" name="Phenylalanyl-Asparaginyl-Methionine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H26N4O5S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03864e">
+            <rdf:Description rdf:about="#M_MAM03864e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pheasnmet"/>
@@ -112494,10 +112546,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03865e" sboTerm="SBO:0000247" id="MAM03865e" name="Phenylalanyl-Aspartate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C13H15N2O5">
+      <species metaid="M_MAM03865e" sboTerm="SBO:0000247" id="M_MAM03865e" name="Phenylalanyl-Aspartate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C13H15N2O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03865e">
+            <rdf:Description rdf:about="#M_MAM03865e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pheasp"/>
@@ -112508,10 +112560,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03866e" sboTerm="SBO:0000247" id="MAM03866e" name="Phenylalanyl-Glutaminyl-Phenylalanine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H28N4O5">
+      <species metaid="M_MAM03866e" sboTerm="SBO:0000247" id="M_MAM03866e" name="Phenylalanyl-Glutaminyl-Phenylalanine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H28N4O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03866e">
+            <rdf:Description rdf:about="#M_MAM03866e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pheglnphe"/>
@@ -112523,10 +112575,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03867e" sboTerm="SBO:0000247" id="MAM03867e" name="Phenylalanyl-Leucine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C15H22N2O3">
+      <species metaid="M_MAM03867e" sboTerm="SBO:0000247" id="M_MAM03867e" name="Phenylalanyl-Leucine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C15H22N2O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03867e">
+            <rdf:Description rdf:about="#M_MAM03867e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pheleu"/>
@@ -112538,10 +112590,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03868e" sboTerm="SBO:0000247" id="MAM03868e" name="Phenylalanyl-Leucyl-Aspartate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C19H26N3O6">
+      <species metaid="M_MAM03868e" sboTerm="SBO:0000247" id="M_MAM03868e" name="Phenylalanyl-Leucyl-Aspartate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C19H26N3O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03868e">
+            <rdf:Description rdf:about="#M_MAM03868e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pheleuasp"/>
@@ -112552,10 +112604,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03869e" sboTerm="SBO:0000247" id="MAM03869e" name="Phenylalanyl-Leucyl-Histidine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H29N5O4">
+      <species metaid="M_MAM03869e" sboTerm="SBO:0000247" id="M_MAM03869e" name="Phenylalanyl-Leucyl-Histidine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H29N5O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03869e">
+            <rdf:Description rdf:about="#M_MAM03869e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pheleuhis"/>
@@ -112567,10 +112619,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03870e" sboTerm="SBO:0000247" id="MAM03870e" name="Phenylalanyl-Lysyl-Alanine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C18H29N4O4">
+      <species metaid="M_MAM03870e" sboTerm="SBO:0000247" id="M_MAM03870e" name="Phenylalanyl-Lysyl-Alanine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C18H29N4O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03870e">
+            <rdf:Description rdf:about="#M_MAM03870e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/phelysala"/>
@@ -112581,10 +112633,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03871e" sboTerm="SBO:0000247" id="MAM03871e" name="Phenylalanyl-Lysyl-Proline" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C20H31N4O4">
+      <species metaid="M_MAM03871e" sboTerm="SBO:0000247" id="M_MAM03871e" name="Phenylalanyl-Lysyl-Proline" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C20H31N4O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03871e">
+            <rdf:Description rdf:about="#M_MAM03871e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/phelyspro"/>
@@ -112595,10 +112647,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03872e" sboTerm="SBO:0000247" id="MAM03872e" name="Phenylalanyl-Phenylalanine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H20N2O3">
+      <species metaid="M_MAM03872e" sboTerm="SBO:0000247" id="M_MAM03872e" name="Phenylalanyl-Phenylalanine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H20N2O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03872e">
+            <rdf:Description rdf:about="#M_MAM03872e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/phephe"/>
@@ -112610,10 +112662,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03873e" sboTerm="SBO:0000247" id="MAM03873e" name="Phenylalanyl-Phenylalaninyl-Asparagine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C22H26N4O5">
+      <species metaid="M_MAM03873e" sboTerm="SBO:0000247" id="M_MAM03873e" name="Phenylalanyl-Phenylalaninyl-Asparagine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C22H26N4O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03873e">
+            <rdf:Description rdf:about="#M_MAM03873e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/phepheasn"/>
@@ -112625,10 +112677,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03874e" sboTerm="SBO:0000247" id="MAM03874e" name="Phenylalanyl-Phenylalaninyl-Threonine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C22H27N3O5">
+      <species metaid="M_MAM03874e" sboTerm="SBO:0000247" id="M_MAM03874e" name="Phenylalanyl-Phenylalaninyl-Threonine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C22H27N3O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03874e">
+            <rdf:Description rdf:about="#M_MAM03874e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/phephethr"/>
@@ -112640,10 +112692,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03875e" sboTerm="SBO:0000247" id="MAM03875e" name="Phenylalanyl-Prolyl-Arginine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C20H31N6O4">
+      <species metaid="M_MAM03875e" sboTerm="SBO:0000247" id="M_MAM03875e" name="Phenylalanyl-Prolyl-Arginine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C20H31N6O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03875e">
+            <rdf:Description rdf:about="#M_MAM03875e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pheproarg"/>
@@ -112654,10 +112706,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03876e" sboTerm="SBO:0000247" id="MAM03876e" name="Phenylalanyl-Seryl-Tryptophan" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H26N4O5">
+      <species metaid="M_MAM03876e" sboTerm="SBO:0000247" id="M_MAM03876e" name="Phenylalanyl-Seryl-Tryptophan" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H26N4O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03876e">
+            <rdf:Description rdf:about="#M_MAM03876e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/phesertrp"/>
@@ -112669,10 +112721,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03877e" sboTerm="SBO:0000247" id="MAM03877e" name="Phenylalanyl-Threonyl-Lysine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C19H31N4O5">
+      <species metaid="M_MAM03877e" sboTerm="SBO:0000247" id="M_MAM03877e" name="Phenylalanyl-Threonyl-Lysine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C19H31N4O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03877e">
+            <rdf:Description rdf:about="#M_MAM03877e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/phethrlys"/>
@@ -112683,10 +112735,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03878e" sboTerm="SBO:0000247" id="MAM03878e" name="Phenylalanyl-Tryptophanyl-Leucine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C26H32N4O4">
+      <species metaid="M_MAM03878e" sboTerm="SBO:0000247" id="M_MAM03878e" name="Phenylalanyl-Tryptophanyl-Leucine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C26H32N4O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03878e">
+            <rdf:Description rdf:about="#M_MAM03878e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/phetrpleu"/>
@@ -112698,10 +112750,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03879e" sboTerm="SBO:0000247" id="MAM03879e" name="Phenylalanyl-Tyrosine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H20N2O4">
+      <species metaid="M_MAM03879e" sboTerm="SBO:0000247" id="M_MAM03879e" name="Phenylalanyl-Tyrosine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H20N2O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03879e">
+            <rdf:Description rdf:about="#M_MAM03879e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/phetyr"/>
@@ -112713,10 +112765,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03880e" sboTerm="SBO:0000247" id="MAM03880e" name="Phenylalanyl-Tyrosinyl-Glutamine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H28N4O6">
+      <species metaid="M_MAM03880e" sboTerm="SBO:0000247" id="M_MAM03880e" name="Phenylalanyl-Tyrosinyl-Glutamine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H28N4O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03880e">
+            <rdf:Description rdf:about="#M_MAM03880e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/phetyrgln"/>
@@ -112728,10 +112780,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03881e" sboTerm="SBO:0000247" id="MAM03881e" name="Phenylalanyl-Tyrosinyl-Lysine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C24H33N4O5">
+      <species metaid="M_MAM03881e" sboTerm="SBO:0000247" id="M_MAM03881e" name="Phenylalanyl-Tyrosinyl-Lysine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C24H33N4O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03881e">
+            <rdf:Description rdf:about="#M_MAM03881e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/phetyrlys"/>
@@ -112742,10 +112794,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03888e" sboTerm="SBO:0000247" id="MAM03888e" name="Prolyl-Arginyl-Aspartate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C15H26N6O6">
+      <species metaid="M_MAM03888e" sboTerm="SBO:0000247" id="M_MAM03888e" name="Prolyl-Arginyl-Aspartate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C15H26N6O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03888e">
+            <rdf:Description rdf:about="#M_MAM03888e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/proargasp"/>
@@ -112757,10 +112809,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03889e" sboTerm="SBO:0000247" id="MAM03889e" name="Prolyl-Arginyl-Cysteine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C14H27N6O4S">
+      <species metaid="M_MAM03889e" sboTerm="SBO:0000247" id="M_MAM03889e" name="Prolyl-Arginyl-Cysteine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C14H27N6O4S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03889e">
+            <rdf:Description rdf:about="#M_MAM03889e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/proargcys"/>
@@ -112771,10 +112823,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03890e" sboTerm="SBO:0000247" id="MAM03890e" name="Prolyl-Asparaginyl-Cysteine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C12H20N4O5S">
+      <species metaid="M_MAM03890e" sboTerm="SBO:0000247" id="M_MAM03890e" name="Prolyl-Asparaginyl-Cysteine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C12H20N4O5S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03890e">
+            <rdf:Description rdf:about="#M_MAM03890e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/proasncys"/>
@@ -112786,10 +112838,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03891e" sboTerm="SBO:0000247" id="MAM03891e" name="Prolyl-Cysteine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H14N2O3S">
+      <species metaid="M_MAM03891e" sboTerm="SBO:0000247" id="M_MAM03891e" name="Prolyl-Cysteine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H14N2O3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03891e">
+            <rdf:Description rdf:about="#M_MAM03891e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/procys"/>
@@ -112801,10 +112853,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03894e" sboTerm="SBO:0000247" id="MAM03894e" name="Prolyl-Glutaminyl-Proline" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C15H24N4O5">
+      <species metaid="M_MAM03894e" sboTerm="SBO:0000247" id="M_MAM03894e" name="Prolyl-Glutaminyl-Proline" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C15H24N4O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03894e">
+            <rdf:Description rdf:about="#M_MAM03894e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/proglnpro"/>
@@ -112816,10 +112868,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03895e" sboTerm="SBO:0000247" id="MAM03895e" name="Prolyl-Glutamatsyl-Lysine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C16H28N4O6">
+      <species metaid="M_MAM03895e" sboTerm="SBO:0000247" id="M_MAM03895e" name="Prolyl-Glutamatsyl-Lysine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C16H28N4O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03895e">
+            <rdf:Description rdf:about="#M_MAM03895e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/proglulys"/>
@@ -112831,10 +112883,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03897e" sboTerm="SBO:0000247" id="MAM03897e" name="Prolyl-Histidine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C11H16N4O3">
+      <species metaid="M_MAM03897e" sboTerm="SBO:0000247" id="M_MAM03897e" name="Prolyl-Histidine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C11H16N4O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03897e">
+            <rdf:Description rdf:about="#M_MAM03897e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/prohis"/>
@@ -112846,10 +112898,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03898e" sboTerm="SBO:0000247" id="MAM03898e" name="Prolyl-Histidyl-Tyrosine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H26N5O5">
+      <species metaid="M_MAM03898e" sboTerm="SBO:0000247" id="M_MAM03898e" name="Prolyl-Histidyl-Tyrosine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H26N5O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03898e">
+            <rdf:Description rdf:about="#M_MAM03898e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/prohistyr"/>
@@ -112860,10 +112912,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03899e" sboTerm="SBO:0000247" id="MAM03899e" name="Prolyl-Leucyl-Arginine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C17H33N6O4">
+      <species metaid="M_MAM03899e" sboTerm="SBO:0000247" id="M_MAM03899e" name="Prolyl-Leucyl-Arginine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C17H33N6O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03899e">
+            <rdf:Description rdf:about="#M_MAM03899e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/proleuarg"/>
@@ -112874,10 +112926,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03900e" sboTerm="SBO:0000247" id="MAM03900e" name="Prolyl-Lysyl-Proline" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C16H29N4O4">
+      <species metaid="M_MAM03900e" sboTerm="SBO:0000247" id="M_MAM03900e" name="Prolyl-Lysyl-Proline" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C16H29N4O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03900e">
+            <rdf:Description rdf:about="#M_MAM03900e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/prolyspro"/>
@@ -112888,10 +112940,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03901e" sboTerm="SBO:0000247" id="MAM03901e" name="Prolyl-Phenylalanine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C14H18N2O3">
+      <species metaid="M_MAM03901e" sboTerm="SBO:0000247" id="M_MAM03901e" name="Prolyl-Phenylalanine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C14H18N2O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03901e">
+            <rdf:Description rdf:about="#M_MAM03901e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/prophe"/>
@@ -112903,10 +112955,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03902e" sboTerm="SBO:0000247" id="MAM03902e" name="Prolyl-Prolyl-Arginine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C16H29N6O4">
+      <species metaid="M_MAM03902e" sboTerm="SBO:0000247" id="M_MAM03902e" name="Prolyl-Prolyl-Arginine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C16H29N6O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03902e">
+            <rdf:Description rdf:about="#M_MAM03902e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/proproarg"/>
@@ -112917,10 +112969,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03903e" sboTerm="SBO:0000247" id="MAM03903e" name="Prolyl-Prolyl-Proline" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C15H23N3O4">
+      <species metaid="M_MAM03903e" sboTerm="SBO:0000247" id="M_MAM03903e" name="Prolyl-Prolyl-Proline" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C15H23N3O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03903e">
+            <rdf:Description rdf:about="#M_MAM03903e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/propropro"/>
@@ -112932,10 +112984,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03904e" sboTerm="SBO:0000247" id="MAM03904e" name="Prolyl-Tryptophanyl-Lysine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C22H32N5O4">
+      <species metaid="M_MAM03904e" sboTerm="SBO:0000247" id="M_MAM03904e" name="Prolyl-Tryptophanyl-Lysine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C22H32N5O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03904e">
+            <rdf:Description rdf:about="#M_MAM03904e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/protrplys"/>
@@ -112946,10 +112998,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03905e" sboTerm="SBO:0000247" id="MAM03905e" name="Prolyl-Tryptophanyl-Threonine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H26N4O5">
+      <species metaid="M_MAM03905e" sboTerm="SBO:0000247" id="M_MAM03905e" name="Prolyl-Tryptophanyl-Threonine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H26N4O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03905e">
+            <rdf:Description rdf:about="#M_MAM03905e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/protrpthr"/>
@@ -112961,10 +113013,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03906e" sboTerm="SBO:0000247" id="MAM03906e" name="Prolyl-Valyl-Glutamine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C15H26N4O5">
+      <species metaid="M_MAM03906e" sboTerm="SBO:0000247" id="M_MAM03906e" name="Prolyl-Valyl-Glutamine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C15H26N4O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03906e">
+            <rdf:Description rdf:about="#M_MAM03906e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/provalgln"/>
@@ -112976,10 +113028,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03925e" sboTerm="SBO:0000247" id="MAM03925e" name="Seryl-Arginyl-Alanine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C12H25N6O5">
+      <species metaid="M_MAM03925e" sboTerm="SBO:0000247" id="M_MAM03925e" name="Seryl-Arginyl-Alanine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C12H25N6O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03925e">
+            <rdf:Description rdf:about="#M_MAM03925e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/serargala"/>
@@ -112990,10 +113042,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03926e" sboTerm="SBO:0000247" id="MAM03926e" name="Seryl-Arginyl-Tryptophan" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C20H30N7O5">
+      <species metaid="M_MAM03926e" sboTerm="SBO:0000247" id="M_MAM03926e" name="Seryl-Arginyl-Tryptophan" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C20H30N7O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03926e">
+            <rdf:Description rdf:about="#M_MAM03926e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/serargtrp"/>
@@ -113004,10 +113056,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03927e" sboTerm="SBO:0000247" id="MAM03927e" name="Seryl-Cysteinyl-Arginine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C12H25N6O5S">
+      <species metaid="M_MAM03927e" sboTerm="SBO:0000247" id="M_MAM03927e" name="Seryl-Cysteinyl-Arginine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C12H25N6O5S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03927e">
+            <rdf:Description rdf:about="#M_MAM03927e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/sercysarg"/>
@@ -113018,10 +113070,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03928e" sboTerm="SBO:0000247" id="MAM03928e" name="Seryl-Glycyl-Glutamate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H16N3O7">
+      <species metaid="M_MAM03928e" sboTerm="SBO:0000247" id="M_MAM03928e" name="Seryl-Glycyl-Glutamate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H16N3O7">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03928e">
+            <rdf:Description rdf:about="#M_MAM03928e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/serglyglu"/>
@@ -113032,10 +113084,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03929e" sboTerm="SBO:0000247" id="MAM03929e" name="Seryl-Lysyl-Histidine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C15H27N6O5">
+      <species metaid="M_MAM03929e" sboTerm="SBO:0000247" id="M_MAM03929e" name="Seryl-Lysyl-Histidine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C15H27N6O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03929e">
+            <rdf:Description rdf:about="#M_MAM03929e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/serlyshis"/>
@@ -113046,10 +113098,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03930e" sboTerm="SBO:0000247" id="MAM03930e" name="Seryl-Phenylalanyl-Lysine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C18H29N4O5">
+      <species metaid="M_MAM03930e" sboTerm="SBO:0000247" id="M_MAM03930e" name="Seryl-Phenylalanyl-Lysine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C18H29N4O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03930e">
+            <rdf:Description rdf:about="#M_MAM03930e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/serphelys"/>
@@ -113060,10 +113112,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03931e" sboTerm="SBO:0000247" id="MAM03931e" name="Seryl-Tryptophanyl-Histidine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H24N6O5">
+      <species metaid="M_MAM03931e" sboTerm="SBO:0000247" id="M_MAM03931e" name="Seryl-Tryptophanyl-Histidine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H24N6O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03931e">
+            <rdf:Description rdf:about="#M_MAM03931e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/sertrphis"/>
@@ -113075,10 +113127,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03983e" sboTerm="SBO:0000247" id="MAM03983e" name="Threonyl-Arginyl-Tyrosine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C19H31N6O6">
+      <species metaid="M_MAM03983e" sboTerm="SBO:0000247" id="M_MAM03983e" name="Threonyl-Arginyl-Tyrosine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C19H31N6O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03983e">
+            <rdf:Description rdf:about="#M_MAM03983e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/thrargtyr"/>
@@ -113089,10 +113141,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03984e" sboTerm="SBO:0000247" id="MAM03984e" name="Threonyl-Asparaginyl-Tyrosine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C17H24N4O7">
+      <species metaid="M_MAM03984e" sboTerm="SBO:0000247" id="M_MAM03984e" name="Threonyl-Asparaginyl-Tyrosine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C17H24N4O7">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03984e">
+            <rdf:Description rdf:about="#M_MAM03984e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/thrasntyr"/>
@@ -113104,10 +113156,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03986e" sboTerm="SBO:0000247" id="MAM03986e" name="Threonyl-Glutaminyl-Glutamate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C14H23N4O8">
+      <species metaid="M_MAM03986e" sboTerm="SBO:0000247" id="M_MAM03986e" name="Threonyl-Glutaminyl-Glutamate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C14H23N4O8">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03986e">
+            <rdf:Description rdf:about="#M_MAM03986e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/thrglnglu"/>
@@ -113118,10 +113170,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03987e" sboTerm="SBO:0000247" id="MAM03987e" name="Threonyl-Glutaminyl-Tyrosine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H26N4O7">
+      <species metaid="M_MAM03987e" sboTerm="SBO:0000247" id="M_MAM03987e" name="Threonyl-Glutaminyl-Tyrosine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H26N4O7">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03987e">
+            <rdf:Description rdf:about="#M_MAM03987e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/thrglntyr"/>
@@ -113133,10 +113185,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03988e" sboTerm="SBO:0000247" id="MAM03988e" name="Threonyl-Histidinyl-Histidine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C16H23N7O5">
+      <species metaid="M_MAM03988e" sboTerm="SBO:0000247" id="M_MAM03988e" name="Threonyl-Histidinyl-Histidine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C16H23N7O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03988e">
+            <rdf:Description rdf:about="#M_MAM03988e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/thrhishis"/>
@@ -113148,10 +113200,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03989e" sboTerm="SBO:0000247" id="MAM03989e" name="Threonyl-Isoleucyl-Arginine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C16H33N6O5">
+      <species metaid="M_MAM03989e" sboTerm="SBO:0000247" id="M_MAM03989e" name="Threonyl-Isoleucyl-Arginine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C16H33N6O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03989e">
+            <rdf:Description rdf:about="#M_MAM03989e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/thrilearg"/>
@@ -113162,10 +113214,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03990e" sboTerm="SBO:0000247" id="MAM03990e" name="Threonyl-Methionyl-Arginine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C15H31N6O5S">
+      <species metaid="M_MAM03990e" sboTerm="SBO:0000247" id="M_MAM03990e" name="Threonyl-Methionyl-Arginine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C15H31N6O5S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03990e">
+            <rdf:Description rdf:about="#M_MAM03990e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/thrmetarg"/>
@@ -113176,10 +113228,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03991e" sboTerm="SBO:0000247" id="MAM03991e" name="Threonyl-Phenylalanyl-Arginine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C19H31N6O5">
+      <species metaid="M_MAM03991e" sboTerm="SBO:0000247" id="M_MAM03991e" name="Threonyl-Phenylalanyl-Arginine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C19H31N6O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03991e">
+            <rdf:Description rdf:about="#M_MAM03991e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/thrphearg"/>
@@ -113190,10 +113242,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03992e" sboTerm="SBO:0000247" id="MAM03992e" name="Threonyl-Seryl-Arginine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C13H27N6O6">
+      <species metaid="M_MAM03992e" sboTerm="SBO:0000247" id="M_MAM03992e" name="Threonyl-Seryl-Arginine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C13H27N6O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03992e">
+            <rdf:Description rdf:about="#M_MAM03992e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/thrserarg"/>
@@ -113204,10 +113256,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03993e" sboTerm="SBO:0000247" id="MAM03993e" name="Threonyl-Threonyl-Arginine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C14H29N6O6">
+      <species metaid="M_MAM03993e" sboTerm="SBO:0000247" id="M_MAM03993e" name="Threonyl-Threonyl-Arginine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C14H29N6O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03993e">
+            <rdf:Description rdf:about="#M_MAM03993e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/thrthrarg"/>
@@ -113218,10 +113270,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03994e" sboTerm="SBO:0000247" id="MAM03994e" name="Threonyl-Tyrosyl-Methionine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H27N3O6S">
+      <species metaid="M_MAM03994e" sboTerm="SBO:0000247" id="M_MAM03994e" name="Threonyl-Tyrosyl-Methionine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H27N3O6S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03994e">
+            <rdf:Description rdf:about="#M_MAM03994e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/thrtyrmet"/>
@@ -113233,10 +113285,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM04008e" sboTerm="SBO:0000247" id="MAM04008e" name="Tryptophanyl-Alanyl-Proline" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H24N4O4">
+      <species metaid="M_MAM04008e" sboTerm="SBO:0000247" id="M_MAM04008e" name="Tryptophanyl-Alanyl-Proline" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H24N4O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM04008e">
+            <rdf:Description rdf:about="#M_MAM04008e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/trpalapro"/>
@@ -113248,10 +113300,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM04009e" sboTerm="SBO:0000247" id="MAM04009e" name="Tryptophanyl-Arginyl-Alanine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C20H30N7O4">
+      <species metaid="M_MAM04009e" sboTerm="SBO:0000247" id="M_MAM04009e" name="Tryptophanyl-Arginyl-Alanine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C20H30N7O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM04009e">
+            <rdf:Description rdf:about="#M_MAM04009e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/trpargala"/>
@@ -113262,10 +113314,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM04010e" sboTerm="SBO:0000247" id="MAM04010e" name="Tryptophanyl-Aspartyl-Aspartate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C19H20N4O8">
+      <species metaid="M_MAM04010e" sboTerm="SBO:0000247" id="M_MAM04010e" name="Tryptophanyl-Aspartyl-Aspartate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C19H20N4O8">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM04010e">
+            <rdf:Description rdf:about="#M_MAM04010e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/trpaspasp"/>
@@ -113276,10 +113328,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM04011e" sboTerm="SBO:0000247" id="MAM04011e" name="Tryptophanyl-Glutaminyl-Glutamine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H28N6O6">
+      <species metaid="M_MAM04011e" sboTerm="SBO:0000247" id="M_MAM04011e" name="Tryptophanyl-Glutaminyl-Glutamine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H28N6O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM04011e">
+            <rdf:Description rdf:about="#M_MAM04011e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/trpglngln"/>
@@ -113291,10 +113343,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM04012e" sboTerm="SBO:0000247" id="MAM04012e" name="Tryptophanyl-Glutamyl-Glycine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H21N4O6">
+      <species metaid="M_MAM04012e" sboTerm="SBO:0000247" id="M_MAM04012e" name="Tryptophanyl-Glutamyl-Glycine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H21N4O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM04012e">
+            <rdf:Description rdf:about="#M_MAM04012e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/trpglugly"/>
@@ -113305,10 +113357,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM04013e" sboTerm="SBO:0000247" id="MAM04013e" name="Tryptophanyl-Glutamyl-Leucine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C22H29N4O6">
+      <species metaid="M_MAM04013e" sboTerm="SBO:0000247" id="M_MAM04013e" name="Tryptophanyl-Glutamyl-Leucine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C22H29N4O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM04013e">
+            <rdf:Description rdf:about="#M_MAM04013e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/trpgluleu"/>
@@ -113319,10 +113371,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM04014e" sboTerm="SBO:0000247" id="MAM04014e" name="Tryptophanyl-Glutamyl-Proline" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C21H25N4O6">
+      <species metaid="M_MAM04014e" sboTerm="SBO:0000247" id="M_MAM04014e" name="Tryptophanyl-Glutamyl-Proline" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C21H25N4O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM04014e">
+            <rdf:Description rdf:about="#M_MAM04014e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/trpglupro"/>
@@ -113333,10 +113385,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM04015e" sboTerm="SBO:0000247" id="MAM04015e" name="Tryptophanyl-Glutamyl-Tyrosine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C25H27N4O7">
+      <species metaid="M_MAM04015e" sboTerm="SBO:0000247" id="M_MAM04015e" name="Tryptophanyl-Glutamyl-Tyrosine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C25H27N4O7">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM04015e">
+            <rdf:Description rdf:about="#M_MAM04015e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/trpglutyr"/>
@@ -113347,10 +113399,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM04017e" sboTerm="SBO:0000247" id="MAM04017e" name="Tryptophanyl-Glycyl-Leucine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H26N4O4">
+      <species metaid="M_MAM04017e" sboTerm="SBO:0000247" id="M_MAM04017e" name="Tryptophanyl-Glycyl-Leucine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H26N4O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM04017e">
+            <rdf:Description rdf:about="#M_MAM04017e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/trpglyleu"/>
@@ -113362,10 +113414,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM04018e" sboTerm="SBO:0000247" id="MAM04018e" name="Tryptophanyl-Glycyl-Phenylalanine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C22H24N4O4">
+      <species metaid="M_MAM04018e" sboTerm="SBO:0000247" id="M_MAM04018e" name="Tryptophanyl-Glycyl-Phenylalanine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C22H24N4O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM04018e">
+            <rdf:Description rdf:about="#M_MAM04018e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/trpglyphe"/>
@@ -113377,10 +113429,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM04019e" sboTerm="SBO:0000247" id="MAM04019e" name="Tryptophanyl-Glycyl-Valine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H24N4O4">
+      <species metaid="M_MAM04019e" sboTerm="SBO:0000247" id="M_MAM04019e" name="Tryptophanyl-Glycyl-Valine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H24N4O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM04019e">
+            <rdf:Description rdf:about="#M_MAM04019e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/trpglyval"/>
@@ -113392,10 +113444,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM04020e" sboTerm="SBO:0000247" id="MAM04020e" name="Tryptophanyl-Histidyl-Methionine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C22H28N6O4S">
+      <species metaid="M_MAM04020e" sboTerm="SBO:0000247" id="M_MAM04020e" name="Tryptophanyl-Histidyl-Methionine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C22H28N6O4S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM04020e">
+            <rdf:Description rdf:about="#M_MAM04020e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/trphismet"/>
@@ -113407,10 +113459,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM04021e" sboTerm="SBO:0000247" id="MAM04021e" name="Tryptophanyl-Isoleucyl-Lysine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C23H36N5O4">
+      <species metaid="M_MAM04021e" sboTerm="SBO:0000247" id="M_MAM04021e" name="Tryptophanyl-Isoleucyl-Lysine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C23H36N5O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM04021e">
+            <rdf:Description rdf:about="#M_MAM04021e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/trpilelys"/>
@@ -113421,10 +113473,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM04022e" sboTerm="SBO:0000247" id="MAM04022e" name="Tryptophanyl-Isoleucyl-Tryptophan" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C28H33N5O4">
+      <species metaid="M_MAM04022e" sboTerm="SBO:0000247" id="M_MAM04022e" name="Tryptophanyl-Isoleucyl-Tryptophan" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C28H33N5O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM04022e">
+            <rdf:Description rdf:about="#M_MAM04022e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/trpiletrp"/>
@@ -113436,10 +113488,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM04023e" sboTerm="SBO:0000247" id="MAM04023e" name="Tryptophanyl-Leucyl-Valine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C22H32N4O4">
+      <species metaid="M_MAM04023e" sboTerm="SBO:0000247" id="M_MAM04023e" name="Tryptophanyl-Leucyl-Valine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C22H32N4O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM04023e">
+            <rdf:Description rdf:about="#M_MAM04023e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/trpleuval"/>
@@ -113451,10 +113503,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM04024e" sboTerm="SBO:0000247" id="MAM04024e" name="Tryptophanyl-Lysine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C17H25N4O3">
+      <species metaid="M_MAM04024e" sboTerm="SBO:0000247" id="M_MAM04024e" name="Tryptophanyl-Lysine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C17H25N4O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM04024e">
+            <rdf:Description rdf:about="#M_MAM04024e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/trplys"/>
@@ -113465,10 +113517,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM04025e" sboTerm="SBO:0000247" id="MAM04025e" name="Tryptophanyl-Methionyl-Arginine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C22H34N7O4S">
+      <species metaid="M_MAM04025e" sboTerm="SBO:0000247" id="M_MAM04025e" name="Tryptophanyl-Methionyl-Arginine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C22H34N7O4S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM04025e">
+            <rdf:Description rdf:about="#M_MAM04025e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/trpmetarg"/>
@@ -113479,10 +113531,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM04026e" sboTerm="SBO:0000247" id="MAM04026e" name="Tryptophanyl-Methionyl-Valine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H30N4O4S">
+      <species metaid="M_MAM04026e" sboTerm="SBO:0000247" id="M_MAM04026e" name="Tryptophanyl-Methionyl-Valine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H30N4O4S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM04026e">
+            <rdf:Description rdf:about="#M_MAM04026e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/trpmetval"/>
@@ -113494,10 +113546,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM04027e" sboTerm="SBO:0000247" id="MAM04027e" name="Tryptophanyl-Phenylalanine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H21N3O3">
+      <species metaid="M_MAM04027e" sboTerm="SBO:0000247" id="M_MAM04027e" name="Tryptophanyl-Phenylalanine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H21N3O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM04027e">
+            <rdf:Description rdf:about="#M_MAM04027e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/trpphe"/>
@@ -113509,10 +113561,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM04028e" sboTerm="SBO:0000247" id="MAM04028e" name="Tryptophanyl-Prolyl-Glycine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H21N4O4">
+      <species metaid="M_MAM04028e" sboTerm="SBO:0000247" id="M_MAM04028e" name="Tryptophanyl-Prolyl-Glycine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H21N4O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM04028e">
+            <rdf:Description rdf:about="#M_MAM04028e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/trpprogly"/>
@@ -113523,10 +113575,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM04029e" sboTerm="SBO:0000247" id="MAM04029e" name="Tryptophanyl-Prolyl-Leucine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C22H30N4O4">
+      <species metaid="M_MAM04029e" sboTerm="SBO:0000247" id="M_MAM04029e" name="Tryptophanyl-Prolyl-Leucine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C22H30N4O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM04029e">
+            <rdf:Description rdf:about="#M_MAM04029e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/trpproleu"/>
@@ -113538,10 +113590,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM04030e" sboTerm="SBO:0000247" id="MAM04030e" name="Tryptophanyl-Prolyl-Valine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H28N4O4">
+      <species metaid="M_MAM04030e" sboTerm="SBO:0000247" id="M_MAM04030e" name="Tryptophanyl-Prolyl-Valine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H28N4O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM04030e">
+            <rdf:Description rdf:about="#M_MAM04030e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/trpproval"/>
@@ -113553,10 +113605,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM04031e" sboTerm="SBO:0000247" id="MAM04031e" name="Tryptophanyl-Seryl-Tyrosine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H26N4O6">
+      <species metaid="M_MAM04031e" sboTerm="SBO:0000247" id="M_MAM04031e" name="Tryptophanyl-Seryl-Tyrosine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H26N4O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM04031e">
+            <rdf:Description rdf:about="#M_MAM04031e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/trpsertyr"/>
@@ -113568,10 +113620,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM04032e" sboTerm="SBO:0000247" id="MAM04032e" name="Tryptophanyl-Threonyl-Glutamate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H25N4O7">
+      <species metaid="M_MAM04032e" sboTerm="SBO:0000247" id="M_MAM04032e" name="Tryptophanyl-Threonyl-Glutamate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H25N4O7">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM04032e">
+            <rdf:Description rdf:about="#M_MAM04032e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/trpthrglu"/>
@@ -113582,10 +113634,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM04033e" sboTerm="SBO:0000247" id="MAM04033e" name="Tryptophanyl-Threonyl-Isoleucine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H30N4O5">
+      <species metaid="M_MAM04033e" sboTerm="SBO:0000247" id="M_MAM04033e" name="Tryptophanyl-Threonyl-Isoleucine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H30N4O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM04033e">
+            <rdf:Description rdf:about="#M_MAM04033e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/trpthrile"/>
@@ -113597,10 +113649,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM04034e" sboTerm="SBO:0000247" id="MAM04034e" name="Tryptophanyl-Threonyl-Tyrosine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C24H28N4O6">
+      <species metaid="M_MAM04034e" sboTerm="SBO:0000247" id="M_MAM04034e" name="Tryptophanyl-Threonyl-Tyrosine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C24H28N4O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM04034e">
+            <rdf:Description rdf:about="#M_MAM04034e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/trpthrtyr"/>
@@ -113612,10 +113664,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM04035e" sboTerm="SBO:0000247" id="MAM04035e" name="Tryptophanyl-Tyrosyl-Glutamine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H29N5O6">
+      <species metaid="M_MAM04035e" sboTerm="SBO:0000247" id="M_MAM04035e" name="Tryptophanyl-Tyrosyl-Glutamine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H29N5O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM04035e">
+            <rdf:Description rdf:about="#M_MAM04035e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/trptyrgln"/>
@@ -113627,10 +113679,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM04036e" sboTerm="SBO:0000247" id="MAM04036e" name="Tryptophanyl-Tyrosyl-Tyrosine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C29H30N4O6">
+      <species metaid="M_MAM04036e" sboTerm="SBO:0000247" id="M_MAM04036e" name="Tryptophanyl-Tyrosyl-Tyrosine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C29H30N4O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM04036e">
+            <rdf:Description rdf:about="#M_MAM04036e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/trptyrtyr"/>
@@ -113642,10 +113694,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM04037e" sboTerm="SBO:0000247" id="MAM04037e" name="Tryptophanyl-Valyl-Aspartate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H25N4O6">
+      <species metaid="M_MAM04037e" sboTerm="SBO:0000247" id="M_MAM04037e" name="Tryptophanyl-Valyl-Aspartate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H25N4O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM04037e">
+            <rdf:Description rdf:about="#M_MAM04037e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/trpvalasp"/>
@@ -113656,10 +113708,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM04043e" sboTerm="SBO:0000247" id="MAM04043e" name="Tyrosyl-Alanine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C12H16N2O4">
+      <species metaid="M_MAM04043e" sboTerm="SBO:0000247" id="M_MAM04043e" name="Tyrosyl-Alanine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C12H16N2O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM04043e">
+            <rdf:Description rdf:about="#M_MAM04043e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/tyrala"/>
@@ -113671,10 +113723,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM04044e" sboTerm="SBO:0000247" id="MAM04044e" name="Tyrosyl-Alaninyl-Phenylalanine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H25N3O5">
+      <species metaid="M_MAM04044e" sboTerm="SBO:0000247" id="M_MAM04044e" name="Tyrosyl-Alaninyl-Phenylalanine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H25N3O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM04044e">
+            <rdf:Description rdf:about="#M_MAM04044e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/tyralaphe"/>
@@ -113686,10 +113738,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM04045e" sboTerm="SBO:0000247" id="MAM04045e" name="Tyrosyl-Arginyl-Glutamate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H30N6O7">
+      <species metaid="M_MAM04045e" sboTerm="SBO:0000247" id="M_MAM04045e" name="Tyrosyl-Arginyl-Glutamate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H30N6O7">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM04045e">
+            <rdf:Description rdf:about="#M_MAM04045e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/tyrargglu"/>
@@ -113701,10 +113753,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM04046e" sboTerm="SBO:0000247" id="MAM04046e" name="Tyrosyl-Arginyl-Serine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C18H29N6O6">
+      <species metaid="M_MAM04046e" sboTerm="SBO:0000247" id="M_MAM04046e" name="Tyrosyl-Arginyl-Serine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C18H29N6O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM04046e">
+            <rdf:Description rdf:about="#M_MAM04046e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/tyrargser"/>
@@ -113715,10 +113767,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM04047e" sboTerm="SBO:0000247" id="MAM04047e" name="Tyrosyl-Aspartyl-Arginine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H28N6O7">
+      <species metaid="M_MAM04047e" sboTerm="SBO:0000247" id="M_MAM04047e" name="Tyrosyl-Aspartyl-Arginine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H28N6O7">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM04047e">
+            <rdf:Description rdf:about="#M_MAM04047e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/tyrasparg"/>
@@ -113730,10 +113782,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM04048e" sboTerm="SBO:0000247" id="MAM04048e" name="Tyrosyl-Cysteinyl-Glycine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C14H19N3O5S">
+      <species metaid="M_MAM04048e" sboTerm="SBO:0000247" id="M_MAM04048e" name="Tyrosyl-Cysteinyl-Glycine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C14H19N3O5S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM04048e">
+            <rdf:Description rdf:about="#M_MAM04048e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/tyrcysgly"/>
@@ -113745,10 +113797,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM04049e" sboTerm="SBO:0000247" id="MAM04049e" name="Tyrosyl-Cysteinyl-Threonine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C16H23N3O6S">
+      <species metaid="M_MAM04049e" sboTerm="SBO:0000247" id="M_MAM04049e" name="Tyrosyl-Cysteinyl-Threonine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C16H23N3O6S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM04049e">
+            <rdf:Description rdf:about="#M_MAM04049e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/tyrcysthr"/>
@@ -113760,10 +113812,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM04050e" sboTerm="SBO:0000247" id="MAM04050e" name="Tyrosyl-Glutamate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C14H17N2O6">
+      <species metaid="M_MAM04050e" sboTerm="SBO:0000247" id="M_MAM04050e" name="Tyrosyl-Glutamate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C14H17N2O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM04050e">
+            <rdf:Description rdf:about="#M_MAM04050e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/tyrglu"/>
@@ -113774,10 +113826,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM04051e" sboTerm="SBO:0000247" id="MAM04051e" name="Tyrosyl-Leucyl-Arginine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C21H35N6O5">
+      <species metaid="M_MAM04051e" sboTerm="SBO:0000247" id="M_MAM04051e" name="Tyrosyl-Leucyl-Arginine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C21H35N6O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM04051e">
+            <rdf:Description rdf:about="#M_MAM04051e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/tyrleuarg"/>
@@ -113788,10 +113840,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM04052e" sboTerm="SBO:0000247" id="MAM04052e" name="Tyrosyl-Phenylalanyl-Tyrosine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H29N3O6">
+      <species metaid="M_MAM04052e" sboTerm="SBO:0000247" id="M_MAM04052e" name="Tyrosyl-Phenylalanyl-Tyrosine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H29N3O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM04052e">
+            <rdf:Description rdf:about="#M_MAM04052e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/tyrphetyr"/>
@@ -113803,10 +113855,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM04053e" sboTerm="SBO:0000247" id="MAM04053e" name="Tyrosyl-Threonine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C13H18N2O5">
+      <species metaid="M_MAM04053e" sboTerm="SBO:0000247" id="M_MAM04053e" name="Tyrosyl-Threonine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C13H18N2O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM04053e">
+            <rdf:Description rdf:about="#M_MAM04053e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/tyrthr"/>
@@ -113818,10 +113870,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM04054e" sboTerm="SBO:0000247" id="MAM04054e" name="Tyrosyl-Tryptophanyl-Phenylalanine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C29H30N4O5">
+      <species metaid="M_MAM04054e" sboTerm="SBO:0000247" id="M_MAM04054e" name="Tyrosyl-Tryptophanyl-Phenylalanine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C29H30N4O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM04054e">
+            <rdf:Description rdf:about="#M_MAM04054e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/tyrtrpphe"/>
@@ -113833,10 +113885,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM04055e" sboTerm="SBO:0000247" id="MAM04055e" name="Tyrosyl-Tyrosine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H20N2O5">
+      <species metaid="M_MAM04055e" sboTerm="SBO:0000247" id="M_MAM04055e" name="Tyrosyl-Tyrosine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H20N2O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM04055e">
+            <rdf:Description rdf:about="#M_MAM04055e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/tyrtyr"/>
@@ -113848,10 +113900,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM04056e" sboTerm="SBO:0000247" id="MAM04056e" name="Tyrosyl-Valyl-Methionine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H29N3O5S">
+      <species metaid="M_MAM04056e" sboTerm="SBO:0000247" id="M_MAM04056e" name="Tyrosyl-Valyl-Methionine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H29N3O5S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM04056e">
+            <rdf:Description rdf:about="#M_MAM04056e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/tyrvalmet"/>
@@ -113863,10 +113915,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM04062e" sboTerm="SBO:0000247" id="MAM04062e" name="Valyl-Arginyl-Glycine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C13H27N6O4">
+      <species metaid="M_MAM04062e" sboTerm="SBO:0000247" id="M_MAM04062e" name="Valyl-Arginyl-Glycine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C13H27N6O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM04062e">
+            <rdf:Description rdf:about="#M_MAM04062e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/valarggly"/>
@@ -113877,10 +113929,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM04063e" sboTerm="SBO:0000247" id="MAM04063e" name="Valyl-Histidyl-Asparagine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C15H24N6O5">
+      <species metaid="M_MAM04063e" sboTerm="SBO:0000247" id="M_MAM04063e" name="Valyl-Histidyl-Asparagine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C15H24N6O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM04063e">
+            <rdf:Description rdf:about="#M_MAM04063e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/valhisasn"/>
@@ -113892,10 +113944,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM04064e" sboTerm="SBO:0000247" id="MAM04064e" name="Valyl-Leucyl-Phenylalanine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H31N3O4">
+      <species metaid="M_MAM04064e" sboTerm="SBO:0000247" id="M_MAM04064e" name="Valyl-Leucyl-Phenylalanine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H31N3O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM04064e">
+            <rdf:Description rdf:about="#M_MAM04064e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/valleuphe"/>
@@ -113907,10 +113959,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM04065e" sboTerm="SBO:0000247" id="MAM04065e" name="Valyl-Lysyl-Tyrosine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C20H33N4O5">
+      <species metaid="M_MAM04065e" sboTerm="SBO:0000247" id="M_MAM04065e" name="Valyl-Lysyl-Tyrosine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C20H33N4O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM04065e">
+            <rdf:Description rdf:about="#M_MAM04065e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/vallystyr"/>
@@ -113921,10 +113973,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM04066e" sboTerm="SBO:0000247" id="MAM04066e" name="Valyl-Phenylalanyl-Arginine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C20H33N6O4">
+      <species metaid="M_MAM04066e" sboTerm="SBO:0000247" id="M_MAM04066e" name="Valyl-Phenylalanyl-Arginine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C20H33N6O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM04066e">
+            <rdf:Description rdf:about="#M_MAM04066e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/valphearg"/>
@@ -113935,10 +113987,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM04067e" sboTerm="SBO:0000247" id="MAM04067e" name="Valyl-Prolyl-Tryptophan" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H28N4O4">
+      <species metaid="M_MAM04067e" sboTerm="SBO:0000247" id="M_MAM04067e" name="Valyl-Prolyl-Tryptophan" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H28N4O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM04067e">
+            <rdf:Description rdf:about="#M_MAM04067e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/valprotrp"/>
@@ -113950,10 +114002,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM04068e" sboTerm="SBO:0000247" id="MAM04068e" name="Valyl-Seryl-Arginine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C14H29N6O5">
+      <species metaid="M_MAM04068e" sboTerm="SBO:0000247" id="M_MAM04068e" name="Valyl-Seryl-Arginine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C14H29N6O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM04068e">
+            <rdf:Description rdf:about="#M_MAM04068e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/valserarg"/>
@@ -113964,10 +114016,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM04069e" sboTerm="SBO:0000247" id="MAM04069e" name="Valyl-Tryptophanyl-Phenylalanine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H30N4O4">
+      <species metaid="M_MAM04069e" sboTerm="SBO:0000247" id="M_MAM04069e" name="Valyl-Tryptophanyl-Phenylalanine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H30N4O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM04069e">
+            <rdf:Description rdf:about="#M_MAM04069e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/valtrpphe"/>
@@ -113979,10 +114031,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM04070e" sboTerm="SBO:0000247" id="MAM04070e" name="Valyl-Tryptophanyl-Valine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H30N4O4">
+      <species metaid="M_MAM04070e" sboTerm="SBO:0000247" id="M_MAM04070e" name="Valyl-Tryptophanyl-Valine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H30N4O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM04070e">
+            <rdf:Description rdf:about="#M_MAM04070e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/valtrpval"/>
@@ -113994,10 +114046,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM04071e" sboTerm="SBO:0000247" id="MAM04071e" name="Valyl-Valine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H20N2O3">
+      <species metaid="M_MAM04071e" sboTerm="SBO:0000247" id="M_MAM04071e" name="Valyl-Valine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H20N2O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM04071e">
+            <rdf:Description rdf:about="#M_MAM04071e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/valval"/>
@@ -114009,10 +114061,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM04016e" sboTerm="SBO:0000247" id="MAM04016e" name="Tryptophanyl-Glycyl-Aspartate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C17H19N4O6">
+      <species metaid="M_MAM04016e" sboTerm="SBO:0000247" id="M_MAM04016e" name="Tryptophanyl-Glycyl-Aspartate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C17H19N4O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM04016e">
+            <rdf:Description rdf:about="#M_MAM04016e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/trpglyasp"/>
@@ -114023,10 +114075,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03411c" sboTerm="SBO:0000247" id="MAM03411c" name="Alanyl-Arginyl-Cysteine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C12H25N6O4S">
+      <species metaid="M_MAM03411c" sboTerm="SBO:0000247" id="M_MAM03411c" name="Alanyl-Arginyl-Cysteine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C12H25N6O4S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03411c">
+            <rdf:Description rdf:about="#M_MAM03411c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/alaargcys"/>
@@ -114037,10 +114089,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03412c" sboTerm="SBO:0000247" id="MAM03412c" name="Alanyl-Arginyl-Glycine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C11H23N6O4">
+      <species metaid="M_MAM03412c" sboTerm="SBO:0000247" id="M_MAM03412c" name="Alanyl-Arginyl-Glycine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C11H23N6O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03412c">
+            <rdf:Description rdf:about="#M_MAM03412c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/alaarggly"/>
@@ -114051,10 +114103,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03413c" sboTerm="SBO:0000247" id="MAM03413c" name="Alanyl-Asparaginyl-Leucine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C13H24N4O5">
+      <species metaid="M_MAM03413c" sboTerm="SBO:0000247" id="M_MAM03413c" name="Alanyl-Asparaginyl-Leucine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C13H24N4O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03413c">
+            <rdf:Description rdf:about="#M_MAM03413c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/alaasnleu"/>
@@ -114066,10 +114118,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03414c" sboTerm="SBO:0000247" id="MAM03414c" name="Alanyl-Glycyl-Lysine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="C11H23N4O4">
+      <species metaid="M_MAM03414c" sboTerm="SBO:0000247" id="M_MAM03414c" name="Alanyl-Glycyl-Lysine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="C11H23N4O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03414c">
+            <rdf:Description rdf:about="#M_MAM03414c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/alaglylys"/>
@@ -114080,10 +114132,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03415c" sboTerm="SBO:0000247" id="MAM03415c" name="Alanyl-Histidyl-Alanine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C12H19N5O4">
+      <species metaid="M_MAM03415c" sboTerm="SBO:0000247" id="M_MAM03415c" name="Alanyl-Histidyl-Alanine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C12H19N5O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03415c">
+            <rdf:Description rdf:about="#M_MAM03415c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/alahisala"/>
@@ -114095,10 +114147,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03416c" sboTerm="SBO:0000247" id="MAM03416c" name="Alanyl-Lysine-Threonine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C13H27N4O5">
+      <species metaid="M_MAM03416c" sboTerm="SBO:0000247" id="M_MAM03416c" name="Alanyl-Lysine-Threonine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C13H27N4O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03416c">
+            <rdf:Description rdf:about="#M_MAM03416c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/alalysthr"/>
@@ -114109,10 +114161,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03435c" sboTerm="SBO:0000247" id="MAM03435c" name="Arginyl-Alanyl-Alanine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C12H25N6O4">
+      <species metaid="M_MAM03435c" sboTerm="SBO:0000247" id="M_MAM03435c" name="Arginyl-Alanyl-Alanine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C12H25N6O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03435c">
+            <rdf:Description rdf:about="#M_MAM03435c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/argalaala"/>
@@ -114123,10 +114175,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03436c" sboTerm="SBO:0000247" id="MAM03436c" name="Arginyl-Alanine-Phenylalanine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C18H29N6O4">
+      <species metaid="M_MAM03436c" sboTerm="SBO:0000247" id="M_MAM03436c" name="Arginyl-Alanine-Phenylalanine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C18H29N6O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03436c">
+            <rdf:Description rdf:about="#M_MAM03436c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/argalaphe"/>
@@ -114137,10 +114189,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03437c" sboTerm="SBO:0000247" id="MAM03437c" name="Arginyl-Alanyl-Threonine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C13H27N6O5">
+      <species metaid="M_MAM03437c" sboTerm="SBO:0000247" id="M_MAM03437c" name="Arginyl-Alanyl-Threonine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C13H27N6O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03437c">
+            <rdf:Description rdf:about="#M_MAM03437c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/argalathr"/>
@@ -114151,10 +114203,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03438c" sboTerm="SBO:0000247" id="MAM03438c" name="Arginyl-Arginine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="C12H28N8O3">
+      <species metaid="M_MAM03438c" sboTerm="SBO:0000247" id="M_MAM03438c" name="Arginyl-Arginine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="C12H28N8O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03438c">
+            <rdf:Description rdf:about="#M_MAM03438c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/argarg"/>
@@ -114165,10 +114217,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03439c" sboTerm="SBO:0000247" id="MAM03439c" name="Arginyl-Arginyl-Lysine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="3" fbc:chemicalFormula="C18H41N10O4">
+      <species metaid="M_MAM03439c" sboTerm="SBO:0000247" id="M_MAM03439c" name="Arginyl-Arginyl-Lysine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="3" fbc:chemicalFormula="C18H41N10O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03439c">
+            <rdf:Description rdf:about="#M_MAM03439c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/argarglys"/>
@@ -114179,10 +114231,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03440c" sboTerm="SBO:0000247" id="MAM03440c" name="Arginyl-Arginyl-Metheonine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="C17H37N9O4S">
+      <species metaid="M_MAM03440c" sboTerm="SBO:0000247" id="M_MAM03440c" name="Arginyl-Arginyl-Metheonine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="C17H37N9O4S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03440c">
+            <rdf:Description rdf:about="#M_MAM03440c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/argargmet"/>
@@ -114193,10 +114245,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03441c" sboTerm="SBO:0000247" id="MAM03441c" name="Arginyl-Cystinyl-Glycine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C11H23N6O4S">
+      <species metaid="M_MAM03441c" sboTerm="SBO:0000247" id="M_MAM03441c" name="Arginyl-Cystinyl-Glycine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C11H23N6O4S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03441c">
+            <rdf:Description rdf:about="#M_MAM03441c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/argcysgly"/>
@@ -114207,10 +114259,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03442c" sboTerm="SBO:0000247" id="MAM03442c" name="Arginyl-Cystinyl-Serine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C12H25N6O5S">
+      <species metaid="M_MAM03442c" sboTerm="SBO:0000247" id="M_MAM03442c" name="Arginyl-Cystinyl-Serine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C12H25N6O5S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03442c">
+            <rdf:Description rdf:about="#M_MAM03442c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/argcysser"/>
@@ -114221,10 +114273,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03443c" sboTerm="SBO:0000247" id="MAM03443c" name="Arginyl-Glutamyl-Glutamate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C16H27N6O8">
+      <species metaid="M_MAM03443c" sboTerm="SBO:0000247" id="M_MAM03443c" name="Arginyl-Glutamyl-Glutamate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C16H27N6O8">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03443c">
+            <rdf:Description rdf:about="#M_MAM03443c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/arggluglu"/>
@@ -114235,10 +114287,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03444c" sboTerm="SBO:0000247" id="MAM03444c" name="Arginyl-Glutamyl-Proline" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C16H28N6O6">
+      <species metaid="M_MAM03444c" sboTerm="SBO:0000247" id="M_MAM03444c" name="Arginyl-Glutamyl-Proline" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C16H28N6O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03444c">
+            <rdf:Description rdf:about="#M_MAM03444c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/argglupro"/>
@@ -114250,10 +114302,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03445c" sboTerm="SBO:0000247" id="MAM03445c" name="Arginyl-Glycyl-Glycine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C10H21N6O4">
+      <species metaid="M_MAM03445c" sboTerm="SBO:0000247" id="M_MAM03445c" name="Arginyl-Glycyl-Glycine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C10H21N6O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03445c">
+            <rdf:Description rdf:about="#M_MAM03445c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/argglygly"/>
@@ -114264,10 +114316,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03446c" sboTerm="SBO:0000247" id="MAM03446c" name="Arginyl-Histidyl-Threonine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C16H29N8O5">
+      <species metaid="M_MAM03446c" sboTerm="SBO:0000247" id="M_MAM03446c" name="Arginyl-Histidyl-Threonine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C16H29N8O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03446c">
+            <rdf:Description rdf:about="#M_MAM03446c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/arghisthr"/>
@@ -114278,10 +114330,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03447c" sboTerm="SBO:0000247" id="MAM03447c" name="Arginyl-Leucyl-Phenylalanine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C21H35N6O4">
+      <species metaid="M_MAM03447c" sboTerm="SBO:0000247" id="M_MAM03447c" name="Arginyl-Leucyl-Phenylalanine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C21H35N6O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03447c">
+            <rdf:Description rdf:about="#M_MAM03447c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/argleuphe"/>
@@ -114292,10 +114344,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03448c" sboTerm="SBO:0000247" id="MAM03448c" name="Arginyl-Lysyl-Aspartate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C16H32N7O6">
+      <species metaid="M_MAM03448c" sboTerm="SBO:0000247" id="M_MAM03448c" name="Arginyl-Lysyl-Aspartate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C16H32N7O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03448c">
+            <rdf:Description rdf:about="#M_MAM03448c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/arglysasp"/>
@@ -114306,10 +114358,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03449c" sboTerm="SBO:0000247" id="MAM03449c" name="Arginyl-Phenylalanine-Arginine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="C21H37N9O4">
+      <species metaid="M_MAM03449c" sboTerm="SBO:0000247" id="M_MAM03449c" name="Arginyl-Phenylalanine-Arginine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="C21H37N9O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03449c">
+            <rdf:Description rdf:about="#M_MAM03449c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/argphearg"/>
@@ -114320,10 +114372,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03450c" sboTerm="SBO:0000247" id="MAM03450c" name="Arginyl-Prolyl-Methionine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C16H31N6O4S">
+      <species metaid="M_MAM03450c" sboTerm="SBO:0000247" id="M_MAM03450c" name="Arginyl-Prolyl-Methionine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C16H31N6O4S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03450c">
+            <rdf:Description rdf:about="#M_MAM03450c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/argpromet"/>
@@ -114334,10 +114386,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03451c" sboTerm="SBO:0000247" id="MAM03451c" name="Arginyl-Prolyl-Threonine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C15H29N6O5">
+      <species metaid="M_MAM03451c" sboTerm="SBO:0000247" id="M_MAM03451c" name="Arginyl-Prolyl-Threonine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C15H29N6O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03451c">
+            <rdf:Description rdf:about="#M_MAM03451c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/argprothr"/>
@@ -114348,10 +114400,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03452c" sboTerm="SBO:0000247" id="MAM03452c" name="Arginyl-Seryl-Serine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C12H25N6O6">
+      <species metaid="M_MAM03452c" sboTerm="SBO:0000247" id="M_MAM03452c" name="Arginyl-Seryl-Serine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C12H25N6O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03452c">
+            <rdf:Description rdf:about="#M_MAM03452c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/argserser"/>
@@ -114362,10 +114414,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03453c" sboTerm="SBO:0000247" id="MAM03453c" name="Argtyrval" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C20H33N6O5">
+      <species metaid="M_MAM03453c" sboTerm="SBO:0000247" id="M_MAM03453c" name="Argtyrval" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C20H33N6O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03453c">
+            <rdf:Description rdf:about="#M_MAM03453c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/argtyrval"/>
@@ -114376,10 +114428,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03454c" sboTerm="SBO:0000247" id="MAM03454c" name="Arginyl-Valyl-Cysteine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C14H29N6O4S">
+      <species metaid="M_MAM03454c" sboTerm="SBO:0000247" id="M_MAM03454c" name="Arginyl-Valyl-Cysteine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C14H29N6O4S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03454c">
+            <rdf:Description rdf:about="#M_MAM03454c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/argvalcys"/>
@@ -114390,10 +114442,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03455c" sboTerm="SBO:0000247" id="MAM03455c" name="Arginyl-Valyl-Tryptophan" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C22H34N7O4">
+      <species metaid="M_MAM03455c" sboTerm="SBO:0000247" id="M_MAM03455c" name="Arginyl-Valyl-Tryptophan" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C22H34N7O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03455c">
+            <rdf:Description rdf:about="#M_MAM03455c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/argvaltrp"/>
@@ -114404,10 +114456,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03456c" sboTerm="SBO:0000247" id="MAM03456c" name="Asparaginyl-Asparaginyl-Arginine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C14H27N8O6">
+      <species metaid="M_MAM03456c" sboTerm="SBO:0000247" id="M_MAM03456c" name="Asparaginyl-Asparaginyl-Arginine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C14H27N8O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03456c">
+            <rdf:Description rdf:about="#M_MAM03456c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/asnasnarg"/>
@@ -114418,10 +114470,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03457c" sboTerm="SBO:0000247" id="MAM03457c" name="Asparaginyl-Cysteinyl-Cysteine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H18N4O5S2">
+      <species metaid="M_MAM03457c" sboTerm="SBO:0000247" id="M_MAM03457c" name="Asparaginyl-Cysteinyl-Cysteine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H18N4O5S2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03457c">
+            <rdf:Description rdf:about="#M_MAM03457c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/asncyscys"/>
@@ -114433,10 +114485,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03458c" sboTerm="SBO:0000247" id="MAM03458c" name="Asparaginyl-Methionyl-Proline" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C14H24N4O5S">
+      <species metaid="M_MAM03458c" sboTerm="SBO:0000247" id="M_MAM03458c" name="Asparaginyl-Methionyl-Proline" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C14H24N4O5S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03458c">
+            <rdf:Description rdf:about="#M_MAM03458c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/asnmetpro"/>
@@ -114448,10 +114500,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03459c" sboTerm="SBO:0000247" id="MAM03459c" name="Asparaginyl-Phenylalanyl-Aspartate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C17H21N4O7">
+      <species metaid="M_MAM03459c" sboTerm="SBO:0000247" id="M_MAM03459c" name="Asparaginyl-Phenylalanyl-Aspartate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C17H21N4O7">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03459c">
+            <rdf:Description rdf:about="#M_MAM03459c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/asnpheasp"/>
@@ -114462,10 +114514,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03460c" sboTerm="SBO:0000247" id="MAM03460c" name="Asparaginyl-Phenylalanyl-Cysteine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C16H22N4O5S">
+      <species metaid="M_MAM03460c" sboTerm="SBO:0000247" id="M_MAM03460c" name="Asparaginyl-Phenylalanyl-Cysteine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C16H22N4O5S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03460c">
+            <rdf:Description rdf:about="#M_MAM03460c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/asnphecys"/>
@@ -114477,10 +114529,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03461c" sboTerm="SBO:0000247" id="MAM03461c" name="Asparaginyl-Tyrosyl-Glycine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C15H20N4O6">
+      <species metaid="M_MAM03461c" sboTerm="SBO:0000247" id="M_MAM03461c" name="Asparaginyl-Tyrosyl-Glycine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C15H20N4O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03461c">
+            <rdf:Description rdf:about="#M_MAM03461c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/asntyrgly"/>
@@ -114492,10 +114544,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03462c" sboTerm="SBO:0000247" id="MAM03462c" name="Asparaginyl-Tyrosyl-Phenylalanine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C22H26N4O6">
+      <species metaid="M_MAM03462c" sboTerm="SBO:0000247" id="M_MAM03462c" name="Asparaginyl-Tyrosyl-Phenylalanine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C22H26N4O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03462c">
+            <rdf:Description rdf:about="#M_MAM03462c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/asntyrphe"/>
@@ -114507,10 +114559,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03463c" sboTerm="SBO:0000247" id="MAM03463c" name="Asparaginyl-Tyrosyl-Threonine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C17H24N4O7">
+      <species metaid="M_MAM03463c" sboTerm="SBO:0000247" id="M_MAM03463c" name="Asparaginyl-Tyrosyl-Threonine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C17H24N4O7">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03463c">
+            <rdf:Description rdf:about="#M_MAM03463c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/asntyrthr"/>
@@ -114522,10 +114574,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03464c" sboTerm="SBO:0000247" id="MAM03464c" name="Asparaginyl-Alanyl-Arginine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C13H24N6O6">
+      <species metaid="M_MAM03464c" sboTerm="SBO:0000247" id="M_MAM03464c" name="Asparaginyl-Alanyl-Arginine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C13H24N6O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03464c">
+            <rdf:Description rdf:about="#M_MAM03464c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/aspalaarg"/>
@@ -114537,10 +114589,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03465c" sboTerm="SBO:0000247" id="MAM03465c" name="Aspartyl-Asparaginyl-Glutamate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C13H18N4O9">
+      <species metaid="M_MAM03465c" sboTerm="SBO:0000247" id="M_MAM03465c" name="Aspartyl-Asparaginyl-Glutamate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C13H18N4O9">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03465c">
+            <rdf:Description rdf:about="#M_MAM03465c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/aspasnglu"/>
@@ -114551,10 +114603,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03466c" sboTerm="SBO:0000247" id="MAM03466c" name="Aspartyl-Glutamate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C9H12N2O7">
+      <species metaid="M_MAM03466c" sboTerm="SBO:0000247" id="M_MAM03466c" name="Aspartyl-Glutamate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C9H12N2O7">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03466c">
+            <rdf:Description rdf:about="#M_MAM03466c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/aspglu"/>
@@ -114565,10 +114617,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03467c" sboTerm="SBO:0000247" id="MAM03467c" name="Aspartyl-Glutamyl-Proline" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C14H19N3O8">
+      <species metaid="M_MAM03467c" sboTerm="SBO:0000247" id="M_MAM03467c" name="Aspartyl-Glutamyl-Proline" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C14H19N3O8">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03467c">
+            <rdf:Description rdf:about="#M_MAM03467c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/aspglupro"/>
@@ -114579,10 +114631,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03468c" sboTerm="SBO:0000247" id="MAM03468c" name="Aspartyl-Glutamyl-Tryptophan" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C20H22N4O8">
+      <species metaid="M_MAM03468c" sboTerm="SBO:0000247" id="M_MAM03468c" name="Aspartyl-Glutamyl-Tryptophan" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C20H22N4O8">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03468c">
+            <rdf:Description rdf:about="#M_MAM03468c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/aspglutrp"/>
@@ -114593,10 +114645,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03469c" sboTerm="SBO:0000247" id="MAM03469c" name="Aspartyl-Histidyl-Cysteine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C13H18N5O6S">
+      <species metaid="M_MAM03469c" sboTerm="SBO:0000247" id="M_MAM03469c" name="Aspartyl-Histidyl-Cysteine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C13H18N5O6S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03469c">
+            <rdf:Description rdf:about="#M_MAM03469c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/asphiscys"/>
@@ -114607,10 +114659,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03470c" sboTerm="SBO:0000247" id="MAM03470c" name="Aspartyl-Histidyl-Proline" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C15H20N5O6">
+      <species metaid="M_MAM03470c" sboTerm="SBO:0000247" id="M_MAM03470c" name="Aspartyl-Histidyl-Proline" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C15H20N5O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03470c">
+            <rdf:Description rdf:about="#M_MAM03470c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/asphispro"/>
@@ -114621,10 +114673,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03471c" sboTerm="SBO:0000247" id="MAM03471c" name="Aspartyl-Lysyl-Glutamate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C15H25N4O8">
+      <species metaid="M_MAM03471c" sboTerm="SBO:0000247" id="M_MAM03471c" name="Aspartyl-Lysyl-Glutamate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C15H25N4O8">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03471c">
+            <rdf:Description rdf:about="#M_MAM03471c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/asplysglu"/>
@@ -114635,10 +114687,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03472c" sboTerm="SBO:0000247" id="MAM03472c" name="Aspartyl-Lysyl-Histidine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C16H26N6O6">
+      <species metaid="M_MAM03472c" sboTerm="SBO:0000247" id="M_MAM03472c" name="Aspartyl-Lysyl-Histidine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C16H26N6O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03472c">
+            <rdf:Description rdf:about="#M_MAM03472c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/asplyshis"/>
@@ -114650,10 +114702,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03473c" sboTerm="SBO:0000247" id="MAM03473c" name="Aspartyl-Methionyl-Aspartate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C13H19N3O8S">
+      <species metaid="M_MAM03473c" sboTerm="SBO:0000247" id="M_MAM03473c" name="Aspartyl-Methionyl-Aspartate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C13H19N3O8S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03473c">
+            <rdf:Description rdf:about="#M_MAM03473c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/aspmetasp"/>
@@ -114664,10 +114716,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03474c" sboTerm="SBO:0000247" id="MAM03474c" name="Aspartyl-Prolyl-Lysine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C15H26N4O6">
+      <species metaid="M_MAM03474c" sboTerm="SBO:0000247" id="M_MAM03474c" name="Aspartyl-Prolyl-Lysine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C15H26N4O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03474c">
+            <rdf:Description rdf:about="#M_MAM03474c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/aspprolys"/>
@@ -114679,10 +114731,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03475c" sboTerm="SBO:0000247" id="MAM03475c" name="Aspartyl-Valyl-Asparagine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C13H21N4O7">
+      <species metaid="M_MAM03475c" sboTerm="SBO:0000247" id="M_MAM03475c" name="Aspartyl-Valyl-Asparagine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C13H21N4O7">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03475c">
+            <rdf:Description rdf:about="#M_MAM03475c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/aspvalasn"/>
@@ -114693,10 +114745,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03527c" sboTerm="SBO:0000247" id="MAM03527c" name="Cystyl-Asparaginyl-Methionine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C12H22N4O5S2">
+      <species metaid="M_MAM03527c" sboTerm="SBO:0000247" id="M_MAM03527c" name="Cystyl-Asparaginyl-Methionine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C12H22N4O5S2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03527c">
+            <rdf:Description rdf:about="#M_MAM03527c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/cysasnmet"/>
@@ -114708,10 +114760,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03528c" sboTerm="SBO:0000247" id="MAM03528c" name="Cystyl-Aspartyl-Phenylalanine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C16H20N3O6S">
+      <species metaid="M_MAM03528c" sboTerm="SBO:0000247" id="M_MAM03528c" name="Cystyl-Aspartyl-Phenylalanine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C16H20N3O6S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03528c">
+            <rdf:Description rdf:about="#M_MAM03528c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/cysaspphe"/>
@@ -114722,10 +114774,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03529c" sboTerm="SBO:0000247" id="MAM03529c" name="Cystyl-Cysteine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H12N2O3S2">
+      <species metaid="M_MAM03529c" sboTerm="SBO:0000247" id="M_MAM03529c" name="Cystyl-Cysteine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H12N2O3S2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03529c">
+            <rdf:Description rdf:about="#M_MAM03529c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/cyscys"/>
@@ -114737,10 +114789,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03530c" sboTerm="SBO:0000247" id="MAM03530c" name="Cystyl-Glutaminyl-Methionine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C13H24N4O5S2">
+      <species metaid="M_MAM03530c" sboTerm="SBO:0000247" id="M_MAM03530c" name="Cystyl-Glutaminyl-Methionine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C13H24N4O5S2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03530c">
+            <rdf:Description rdf:about="#M_MAM03530c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/cysglnmet"/>
@@ -114752,10 +114804,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03531c" sboTerm="SBO:0000247" id="MAM03531c" name="Cystyl-Glutamyl-Histidine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C14H20N5O6S">
+      <species metaid="M_MAM03531c" sboTerm="SBO:0000247" id="M_MAM03531c" name="Cystyl-Glutamyl-Histidine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C14H20N5O6S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03531c">
+            <rdf:Description rdf:about="#M_MAM03531c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/cysgluhis"/>
@@ -114766,10 +114818,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03532c" sboTerm="SBO:0000247" id="MAM03532c" name="Cystyl-Glutamyl-Tryptophan" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C19H23N4O6S">
+      <species metaid="M_MAM03532c" sboTerm="SBO:0000247" id="M_MAM03532c" name="Cystyl-Glutamyl-Tryptophan" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C19H23N4O6S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03532c">
+            <rdf:Description rdf:about="#M_MAM03532c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/cysglutrp"/>
@@ -114780,10 +114832,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03533c" sboTerm="SBO:0000247" id="MAM03533c" name="Cystyl-Leucyl-Threonine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C13H25N3O5S">
+      <species metaid="M_MAM03533c" sboTerm="SBO:0000247" id="M_MAM03533c" name="Cystyl-Leucyl-Threonine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C13H25N3O5S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03533c">
+            <rdf:Description rdf:about="#M_MAM03533c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/cysleuthr"/>
@@ -114795,10 +114847,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03534c" sboTerm="SBO:0000247" id="MAM03534c" name="Cystyl-Seryl-Methionine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C11H21N3O5S2">
+      <species metaid="M_MAM03534c" sboTerm="SBO:0000247" id="M_MAM03534c" name="Cystyl-Seryl-Methionine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C11H21N3O5S2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03534c">
+            <rdf:Description rdf:about="#M_MAM03534c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/cyssermet"/>
@@ -114810,10 +114862,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03535c" sboTerm="SBO:0000247" id="MAM03535c" name="Cystyl-Tyrosyl-Asparagine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C16H22N4O6S">
+      <species metaid="M_MAM03535c" sboTerm="SBO:0000247" id="M_MAM03535c" name="Cystyl-Tyrosyl-Asparagine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C16H22N4O6S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03535c">
+            <rdf:Description rdf:about="#M_MAM03535c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/cystyrasn"/>
@@ -114825,10 +114877,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03596c" sboTerm="SBO:0000247" id="MAM03596c" name="Glutaminyl-Asparaginyl-Glutamine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C14H24N6O7">
+      <species metaid="M_MAM03596c" sboTerm="SBO:0000247" id="M_MAM03596c" name="Glutaminyl-Asparaginyl-Glutamine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C14H24N6O7">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03596c">
+            <rdf:Description rdf:about="#M_MAM03596c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/glnasngln"/>
@@ -114840,10 +114892,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03597c" sboTerm="SBO:0000247" id="MAM03597c" name="Glutaminyl-Histidyl-Histidine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C17H24N8O5">
+      <species metaid="M_MAM03597c" sboTerm="SBO:0000247" id="M_MAM03597c" name="Glutaminyl-Histidyl-Histidine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C17H24N8O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03597c">
+            <rdf:Description rdf:about="#M_MAM03597c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/glnhishis"/>
@@ -114855,10 +114907,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03598c" sboTerm="SBO:0000247" id="MAM03598c" name="Glutaminyl-Histidyl-Lysine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C17H30N7O5">
+      <species metaid="M_MAM03598c" sboTerm="SBO:0000247" id="M_MAM03598c" name="Glutaminyl-Histidyl-Lysine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C17H30N7O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03598c">
+            <rdf:Description rdf:about="#M_MAM03598c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/glnhislys"/>
@@ -114869,10 +114921,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03599c" sboTerm="SBO:0000247" id="MAM03599c" name="Glutaminyl-Lysyl-Lysine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C17H36N6O5">
+      <species metaid="M_MAM03599c" sboTerm="SBO:0000247" id="M_MAM03599c" name="Glutaminyl-Lysyl-Lysine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C17H36N6O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03599c">
+            <rdf:Description rdf:about="#M_MAM03599c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/glnlyslys"/>
@@ -114883,10 +114935,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03600c" sboTerm="SBO:0000247" id="MAM03600c" name="Glutaminyl-Lysyl-Tryptophan" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C22H33N6O5">
+      <species metaid="M_MAM03600c" sboTerm="SBO:0000247" id="M_MAM03600c" name="Glutaminyl-Lysyl-Tryptophan" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C22H33N6O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03600c">
+            <rdf:Description rdf:about="#M_MAM03600c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/glnlystrp"/>
@@ -114897,10 +114949,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03601c" sboTerm="SBO:0000247" id="MAM03601c" name="Glutaminyl-Prolyl-Glutamate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C15H23N4O7">
+      <species metaid="M_MAM03601c" sboTerm="SBO:0000247" id="M_MAM03601c" name="Glutaminyl-Prolyl-Glutamate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C15H23N4O7">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03601c">
+            <rdf:Description rdf:about="#M_MAM03601c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/glnproglu"/>
@@ -114911,10 +114963,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03602c" sboTerm="SBO:0000247" id="MAM03602c" name="Glutaminyl-Tryptophanyl-Glutamate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C21H26N5O7">
+      <species metaid="M_MAM03602c" sboTerm="SBO:0000247" id="M_MAM03602c" name="Glutaminyl-Tryptophanyl-Glutamate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C21H26N5O7">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03602c">
+            <rdf:Description rdf:about="#M_MAM03602c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/glntrpglu"/>
@@ -114925,10 +114977,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03603c" sboTerm="SBO:0000247" id="MAM03603c" name="Glutaminyl-Tyrosyl-Leucine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H30N4O6">
+      <species metaid="M_MAM03603c" sboTerm="SBO:0000247" id="M_MAM03603c" name="Glutaminyl-Tyrosyl-Leucine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H30N4O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03603c">
+            <rdf:Description rdf:about="#M_MAM03603c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/glntyrleu"/>
@@ -114940,10 +114992,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03606c" sboTerm="SBO:0000247" id="MAM03606c" name="Glutaminyl-Arginyl-Leucine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C17H32N6O6">
+      <species metaid="M_MAM03606c" sboTerm="SBO:0000247" id="M_MAM03606c" name="Glutaminyl-Arginyl-Leucine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C17H32N6O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03606c">
+            <rdf:Description rdf:about="#M_MAM03606c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/gluargleu"/>
@@ -114955,10 +115007,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03607c" sboTerm="SBO:0000247" id="MAM03607c" name="Glutaminyl-Asparaginyl-Leucine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C15H25N4O7">
+      <species metaid="M_MAM03607c" sboTerm="SBO:0000247" id="M_MAM03607c" name="Glutaminyl-Asparaginyl-Leucine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C15H25N4O7">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03607c">
+            <rdf:Description rdf:about="#M_MAM03607c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/gluasnleu"/>
@@ -114969,10 +115021,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03608c" sboTerm="SBO:0000247" id="MAM03608c" name="Glutamyl-Glutamate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C10H14N2O7">
+      <species metaid="M_MAM03608c" sboTerm="SBO:0000247" id="M_MAM03608c" name="Glutamyl-Glutamate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C10H14N2O7">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03608c">
+            <rdf:Description rdf:about="#M_MAM03608c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/gluglu"/>
@@ -114983,10 +115035,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03609c" sboTerm="SBO:0000247" id="MAM03609c" name="Glutamyl-Isoleucyl-Lysine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C17H32N4O6">
+      <species metaid="M_MAM03609c" sboTerm="SBO:0000247" id="M_MAM03609c" name="Glutamyl-Isoleucyl-Lysine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C17H32N4O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03609c">
+            <rdf:Description rdf:about="#M_MAM03609c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/gluilelys"/>
@@ -114998,10 +115050,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03610c" sboTerm="SBO:0000247" id="MAM03610c" name="Glutamyl-Leucine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C11H19N2O5">
+      <species metaid="M_MAM03610c" sboTerm="SBO:0000247" id="M_MAM03610c" name="Glutamyl-Leucine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C11H19N2O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03610c">
+            <rdf:Description rdf:about="#M_MAM03610c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/gluleu"/>
@@ -115012,10 +115064,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03611c" sboTerm="SBO:0000247" id="MAM03611c" name="Glutamyl-Methionine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H17N2O5S">
+      <species metaid="M_MAM03611c" sboTerm="SBO:0000247" id="M_MAM03611c" name="Glutamyl-Methionine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H17N2O5S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03611c">
+            <rdf:Description rdf:about="#M_MAM03611c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/glumet"/>
@@ -115026,10 +115078,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03612c" sboTerm="SBO:0000247" id="MAM03612c" name="Glutamyl-Methioninyl-Histidine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C16H24N5O6S">
+      <species metaid="M_MAM03612c" sboTerm="SBO:0000247" id="M_MAM03612c" name="Glutamyl-Methioninyl-Histidine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C16H24N5O6S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03612c">
+            <rdf:Description rdf:about="#M_MAM03612c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/glumethis"/>
@@ -115040,10 +115092,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03616c" sboTerm="SBO:0000247" id="MAM03616c" name="Glutamyl-Threonine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C9H15N2O6">
+      <species metaid="M_MAM03616c" sboTerm="SBO:0000247" id="M_MAM03616c" name="Glutamyl-Threonine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C9H15N2O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03616c">
+            <rdf:Description rdf:about="#M_MAM03616c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/gluthr"/>
@@ -115054,10 +115106,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03617c" sboTerm="SBO:0000247" id="MAM03617c" name="Glutamyl-Threonyl-Lysine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C15H28N4O7">
+      <species metaid="M_MAM03617c" sboTerm="SBO:0000247" id="M_MAM03617c" name="Glutamyl-Threonyl-Lysine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C15H28N4O7">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03617c">
+            <rdf:Description rdf:about="#M_MAM03617c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/gluthrlys"/>
@@ -115069,10 +115121,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03618c" sboTerm="SBO:0000247" id="MAM03618c" name="Glutamyl-Tryptophanyl-Alanine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C19H23N4O6">
+      <species metaid="M_MAM03618c" sboTerm="SBO:0000247" id="M_MAM03618c" name="Glutamyl-Tryptophanyl-Alanine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C19H23N4O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03618c">
+            <rdf:Description rdf:about="#M_MAM03618c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/glutrpala"/>
@@ -115083,10 +115135,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03624c" sboTerm="SBO:0000247" id="MAM03624c" name="Glycyl-Histidyl-Asparagine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C12H18N6O5">
+      <species metaid="M_MAM03624c" sboTerm="SBO:0000247" id="M_MAM03624c" name="Glycyl-Histidyl-Asparagine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C12H18N6O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03624c">
+            <rdf:Description rdf:about="#M_MAM03624c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/glyhisasn"/>
@@ -115098,10 +115150,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03625c" sboTerm="SBO:0000247" id="MAM03625c" name="Glycyl-Histidyl-Lysine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C14H25N6O4">
+      <species metaid="M_MAM03625c" sboTerm="SBO:0000247" id="M_MAM03625c" name="Glycyl-Histidyl-Lysine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C14H25N6O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03625c">
+            <rdf:Description rdf:about="#M_MAM03625c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/glyhislys"/>
@@ -115112,10 +115164,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03627c" sboTerm="SBO:0000247" id="MAM03627c" name="Glycyl-Lysyl-Cysteine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C11H23N4O4S">
+      <species metaid="M_MAM03627c" sboTerm="SBO:0000247" id="M_MAM03627c" name="Glycyl-Lysyl-Cysteine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C11H23N4O4S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03627c">
+            <rdf:Description rdf:about="#M_MAM03627c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/glylyscys"/>
@@ -115126,10 +115178,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03628c" sboTerm="SBO:0000247" id="MAM03628c" name="Glycyl-Lysyl-Phenylalanine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C17H27N4O4">
+      <species metaid="M_MAM03628c" sboTerm="SBO:0000247" id="M_MAM03628c" name="Glycyl-Lysyl-Phenylalanine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C17H27N4O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03628c">
+            <rdf:Description rdf:about="#M_MAM03628c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/glylysphe"/>
@@ -115140,10 +115192,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03632c" sboTerm="SBO:0000247" id="MAM03632c" name="Glycyl-Tyrosyl-Lysine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C17H27N4O5">
+      <species metaid="M_MAM03632c" sboTerm="SBO:0000247" id="M_MAM03632c" name="Glycyl-Tyrosyl-Lysine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C17H27N4O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03632c">
+            <rdf:Description rdf:about="#M_MAM03632c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/glytyrlys"/>
@@ -115154,10 +115206,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03633c" sboTerm="SBO:0000247" id="MAM03633c" name="Glycyl-Valyl-Histidine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C13H21N5O4">
+      <species metaid="M_MAM03633c" sboTerm="SBO:0000247" id="M_MAM03633c" name="Glycyl-Valyl-Histidine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C13H21N5O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03633c">
+            <rdf:Description rdf:about="#M_MAM03633c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/glyvalhis"/>
@@ -115169,10 +115221,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03662c" sboTerm="SBO:0000247" id="MAM03662c" name="Histidyl-Arginyl-Cysteine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C15H27N8O4S">
+      <species metaid="M_MAM03662c" sboTerm="SBO:0000247" id="M_MAM03662c" name="Histidyl-Arginyl-Cysteine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C15H27N8O4S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03662c">
+            <rdf:Description rdf:about="#M_MAM03662c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hisargcys"/>
@@ -115183,10 +115235,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03663c" sboTerm="SBO:0000247" id="MAM03663c" name="Histidyl-Arginyl-Serine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C15H27N8O5">
+      <species metaid="M_MAM03663c" sboTerm="SBO:0000247" id="M_MAM03663c" name="Histidyl-Arginyl-Serine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C15H27N8O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03663c">
+            <rdf:Description rdf:about="#M_MAM03663c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hisargser"/>
@@ -115197,10 +115249,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03664c" sboTerm="SBO:0000247" id="MAM03664c" name="Histidyl-Aspartate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H13N4O5">
+      <species metaid="M_MAM03664c" sboTerm="SBO:0000247" id="M_MAM03664c" name="Histidyl-Aspartate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H13N4O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03664c">
+            <rdf:Description rdf:about="#M_MAM03664c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hisasp"/>
@@ -115211,10 +115263,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03665c" sboTerm="SBO:0000247" id="MAM03665c" name="Histidyl-Cystyl-Cysteine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C12H19N5O4S2">
+      <species metaid="M_MAM03665c" sboTerm="SBO:0000247" id="M_MAM03665c" name="Histidyl-Cystyl-Cysteine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C12H19N5O4S2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03665c">
+            <rdf:Description rdf:about="#M_MAM03665c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hiscyscys"/>
@@ -115226,10 +115278,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03666c" sboTerm="SBO:0000247" id="MAM03666c" name="Histidyl-Glutaminyl-Alanine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C14H22N6O5">
+      <species metaid="M_MAM03666c" sboTerm="SBO:0000247" id="M_MAM03666c" name="Histidyl-Glutaminyl-Alanine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C14H22N6O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03666c">
+            <rdf:Description rdf:about="#M_MAM03666c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hisglnala"/>
@@ -115241,10 +115293,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03667c" sboTerm="SBO:0000247" id="MAM03667c" name="Histidyl-Glutamate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C11H15N4O5">
+      <species metaid="M_MAM03667c" sboTerm="SBO:0000247" id="M_MAM03667c" name="Histidyl-Glutamate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C11H15N4O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03667c">
+            <rdf:Description rdf:about="#M_MAM03667c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hisglu"/>
@@ -115255,10 +115307,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03668c" sboTerm="SBO:0000247" id="MAM03668c" name="Histidyl-Glutamyl-Glutamine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C16H23N6O7">
+      <species metaid="M_MAM03668c" sboTerm="SBO:0000247" id="M_MAM03668c" name="Histidyl-Glutamyl-Glutamine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C16H23N6O7">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03668c">
+            <rdf:Description rdf:about="#M_MAM03668c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hisglugln"/>
@@ -115269,10 +115321,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03669c" sboTerm="SBO:0000247" id="MAM03669c" name="Histidyl-Lysyl-Lysine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C14H25N6O4">
+      <species metaid="M_MAM03669c" sboTerm="SBO:0000247" id="M_MAM03669c" name="Histidyl-Lysyl-Lysine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C14H25N6O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03669c">
+            <rdf:Description rdf:about="#M_MAM03669c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hisglylys"/>
@@ -115283,10 +115335,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03670c" sboTerm="SBO:0000247" id="MAM03670c" name="Histidyl-Histidyl-Lysine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C18H29N8O4">
+      <species metaid="M_MAM03670c" sboTerm="SBO:0000247" id="M_MAM03670c" name="Histidyl-Histidyl-Lysine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C18H29N8O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03670c">
+            <rdf:Description rdf:about="#M_MAM03670c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hishislys"/>
@@ -115297,10 +115349,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03671c" sboTerm="SBO:0000247" id="MAM03671c" name="Histidyl-Lysyl-Alanine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C15H27N6O4">
+      <species metaid="M_MAM03671c" sboTerm="SBO:0000247" id="M_MAM03671c" name="Histidyl-Lysyl-Alanine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C15H27N6O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03671c">
+            <rdf:Description rdf:about="#M_MAM03671c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hislysala"/>
@@ -115311,10 +115363,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03672c" sboTerm="SBO:0000247" id="MAM03672c" name="Histidyl-Lysyl-Glutamate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C17H28N6O6">
+      <species metaid="M_MAM03672c" sboTerm="SBO:0000247" id="M_MAM03672c" name="Histidyl-Lysyl-Glutamate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C17H28N6O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03672c">
+            <rdf:Description rdf:about="#M_MAM03672c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hislysglu"/>
@@ -115326,10 +115378,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03673c" sboTerm="SBO:0000247" id="MAM03673c" name="Histidyl-Lysyl-Isoleucine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C18H33N6O4">
+      <species metaid="M_MAM03673c" sboTerm="SBO:0000247" id="M_MAM03673c" name="Histidyl-Lysyl-Isoleucine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C18H33N6O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03673c">
+            <rdf:Description rdf:about="#M_MAM03673c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hislysile"/>
@@ -115340,10 +115392,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03674c" sboTerm="SBO:0000247" id="MAM03674c" name="Histidyl-Lysyl-Threonine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C16H29N6O5">
+      <species metaid="M_MAM03674c" sboTerm="SBO:0000247" id="M_MAM03674c" name="Histidyl-Lysyl-Threonine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C16H29N6O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03674c">
+            <rdf:Description rdf:about="#M_MAM03674c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hislysthr"/>
@@ -115354,10 +115406,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03675c" sboTerm="SBO:0000247" id="MAM03675c" name="Histidyl-Lysyl-Valine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C17H31N6O4">
+      <species metaid="M_MAM03675c" sboTerm="SBO:0000247" id="M_MAM03675c" name="Histidyl-Lysyl-Valine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C17H31N6O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03675c">
+            <rdf:Description rdf:about="#M_MAM03675c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hislysval"/>
@@ -115368,10 +115420,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03676c" sboTerm="SBO:0000247" id="MAM03676c" name="Histidyl-Methionine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C11H18N4O3S">
+      <species metaid="M_MAM03676c" sboTerm="SBO:0000247" id="M_MAM03676c" name="Histidyl-Methionine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C11H18N4O3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03676c">
+            <rdf:Description rdf:about="#M_MAM03676c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hismet"/>
@@ -115383,10 +115435,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03677c" sboTerm="SBO:0000247" id="MAM03677c" name="Histidyl-Methionyl-Glutamine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C16H26N6O5S">
+      <species metaid="M_MAM03677c" sboTerm="SBO:0000247" id="M_MAM03677c" name="Histidyl-Methionyl-Glutamine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C16H26N6O5S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03677c">
+            <rdf:Description rdf:about="#M_MAM03677c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hismetgln"/>
@@ -115398,10 +115450,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03678c" sboTerm="SBO:0000247" id="MAM03678c" name="Histidyl-Phenylalanyl-Arginine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C21H31N8O4">
+      <species metaid="M_MAM03678c" sboTerm="SBO:0000247" id="M_MAM03678c" name="Histidyl-Phenylalanyl-Arginine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C21H31N8O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03678c">
+            <rdf:Description rdf:about="#M_MAM03678c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hisphearg"/>
@@ -115412,10 +115464,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03679c" sboTerm="SBO:0000247" id="MAM03679c" name="Histidyl-Prolyl-Lysine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C17H29N6O4">
+      <species metaid="M_MAM03679c" sboTerm="SBO:0000247" id="M_MAM03679c" name="Histidyl-Prolyl-Lysine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C17H29N6O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03679c">
+            <rdf:Description rdf:about="#M_MAM03679c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hisprolys"/>
@@ -115426,10 +115478,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03680c" sboTerm="SBO:0000247" id="MAM03680c" name="Histidyl-Tryptophanyl-Histidine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H26N8O4">
+      <species metaid="M_MAM03680c" sboTerm="SBO:0000247" id="M_MAM03680c" name="Histidyl-Tryptophanyl-Histidine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H26N8O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03680c">
+            <rdf:Description rdf:about="#M_MAM03680c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/histrphis"/>
@@ -115441,10 +115493,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03693c" sboTerm="SBO:0000247" id="MAM03693c" name="Isoleucyl-Arginyl-Isoleucine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C18H37N6O4">
+      <species metaid="M_MAM03693c" sboTerm="SBO:0000247" id="M_MAM03693c" name="Isoleucyl-Arginyl-Isoleucine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C18H37N6O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03693c">
+            <rdf:Description rdf:about="#M_MAM03693c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ileargile"/>
@@ -115455,10 +115507,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03694c" sboTerm="SBO:0000247" id="MAM03694c" name="Isoleucyl-Asparaginyl-Histidine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C16H26N6O5">
+      <species metaid="M_MAM03694c" sboTerm="SBO:0000247" id="M_MAM03694c" name="Isoleucyl-Asparaginyl-Histidine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C16H26N6O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03694c">
+            <rdf:Description rdf:about="#M_MAM03694c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ileasnhis"/>
@@ -115470,10 +115522,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03695c" sboTerm="SBO:0000247" id="MAM03695c" name="Isolecyl-Aspartate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H17N2O5">
+      <species metaid="M_MAM03695c" sboTerm="SBO:0000247" id="M_MAM03695c" name="Isolecyl-Aspartate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H17N2O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03695c">
+            <rdf:Description rdf:about="#M_MAM03695c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ileasp"/>
@@ -115484,10 +115536,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03696c" sboTerm="SBO:0000247" id="MAM03696c" name="Isolecyl-Glutaminyl-Glutamate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C16H27N4O7">
+      <species metaid="M_MAM03696c" sboTerm="SBO:0000247" id="M_MAM03696c" name="Isolecyl-Glutaminyl-Glutamate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C16H27N4O7">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03696c">
+            <rdf:Description rdf:about="#M_MAM03696c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ileglnglu"/>
@@ -115498,10 +115550,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03697c" sboTerm="SBO:0000247" id="MAM03697c" name="Isolecyl-Glycyl-Arginine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C14H29N6O4">
+      <species metaid="M_MAM03697c" sboTerm="SBO:0000247" id="M_MAM03697c" name="Isolecyl-Glycyl-Arginine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C14H29N6O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03697c">
+            <rdf:Description rdf:about="#M_MAM03697c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ileglyarg"/>
@@ -115512,10 +115564,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03698c" sboTerm="SBO:0000247" id="MAM03698c" name="Isolecyl-Prolyl-Lysine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C17H33N4O4">
+      <species metaid="M_MAM03698c" sboTerm="SBO:0000247" id="M_MAM03698c" name="Isolecyl-Prolyl-Lysine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C17H33N4O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03698c">
+            <rdf:Description rdf:about="#M_MAM03698c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ileprolys"/>
@@ -115526,10 +115578,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03699c" sboTerm="SBO:0000247" id="MAM03699c" name="Isolecyl-Seryl-Arginine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C15H31N6O5">
+      <species metaid="M_MAM03699c" sboTerm="SBO:0000247" id="M_MAM03699c" name="Isolecyl-Seryl-Arginine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C15H31N6O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03699c">
+            <rdf:Description rdf:about="#M_MAM03699c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ileserarg"/>
@@ -115540,10 +115592,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03700c" sboTerm="SBO:0000247" id="MAM03700c" name="Isolecyl-Tryptophanyl-Tyrosine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C26H32N4O5">
+      <species metaid="M_MAM03700c" sboTerm="SBO:0000247" id="M_MAM03700c" name="Isolecyl-Tryptophanyl-Tyrosine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C26H32N4O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03700c">
+            <rdf:Description rdf:about="#M_MAM03700c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/iletrptyr"/>
@@ -115555,10 +115607,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03711c" sboTerm="SBO:0000247" id="MAM03711c" name="Leucyl-Alanyl-Arginine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C15H31N6O4">
+      <species metaid="M_MAM03711c" sboTerm="SBO:0000247" id="M_MAM03711c" name="Leucyl-Alanyl-Arginine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C15H31N6O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03711c">
+            <rdf:Description rdf:about="#M_MAM03711c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/leualaarg"/>
@@ -115569,10 +115621,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03712c" sboTerm="SBO:0000247" id="MAM03712c" name="Leucyl-Asparaginyl-Aspartate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C14H23N4O7">
+      <species metaid="M_MAM03712c" sboTerm="SBO:0000247" id="M_MAM03712c" name="Leucyl-Asparaginyl-Aspartate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C14H23N4O7">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03712c">
+            <rdf:Description rdf:about="#M_MAM03712c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/leuasnasp"/>
@@ -115583,10 +115635,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03713c" sboTerm="SBO:0000247" id="MAM03713c" name="Leucyl-Aspartyl-Lysine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C16H30N4O6">
+      <species metaid="M_MAM03713c" sboTerm="SBO:0000247" id="M_MAM03713c" name="Leucyl-Aspartyl-Lysine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C16H30N4O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03713c">
+            <rdf:Description rdf:about="#M_MAM03713c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/leuasplys"/>
@@ -115598,10 +115650,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03716c" sboTerm="SBO:0000247" id="MAM03716c" name="Leucyl-Leucyl-Tryptophan" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H34N4O4">
+      <species metaid="M_MAM03716c" sboTerm="SBO:0000247" id="M_MAM03716c" name="Leucyl-Leucyl-Tryptophan" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H34N4O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03716c">
+            <rdf:Description rdf:about="#M_MAM03716c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/leuleutrp"/>
@@ -115613,10 +115665,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03717c" sboTerm="SBO:0000247" id="MAM03717c" name="Leucyl-Proline" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C11H20N2O3">
+      <species metaid="M_MAM03717c" sboTerm="SBO:0000247" id="M_MAM03717c" name="Leucyl-Proline" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C11H20N2O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03717c">
+            <rdf:Description rdf:about="#M_MAM03717c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/leupro"/>
@@ -115628,10 +115680,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03718c" sboTerm="SBO:0000247" id="MAM03718c" name="Leucyl-Prolyl-Arginine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C17H33N6O4">
+      <species metaid="M_MAM03718c" sboTerm="SBO:0000247" id="M_MAM03718c" name="Leucyl-Prolyl-Arginine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C17H33N6O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03718c">
+            <rdf:Description rdf:about="#M_MAM03718c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/leuproarg"/>
@@ -115642,10 +115694,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03719c" sboTerm="SBO:0000247" id="MAM03719c" name="Leucyl-Seryl-Tryptophan" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H28N4O5">
+      <species metaid="M_MAM03719c" sboTerm="SBO:0000247" id="M_MAM03719c" name="Leucyl-Seryl-Tryptophan" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H28N4O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03719c">
+            <rdf:Description rdf:about="#M_MAM03719c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/leusertrp"/>
@@ -115657,10 +115709,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03720c" sboTerm="SBO:0000247" id="MAM03720c" name="Leucyl-Tryptophan" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C17H23N3O3">
+      <species metaid="M_MAM03720c" sboTerm="SBO:0000247" id="M_MAM03720c" name="Leucyl-Tryptophan" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C17H23N3O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03720c">
+            <rdf:Description rdf:about="#M_MAM03720c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/leutrp"/>
@@ -115672,10 +115724,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03721c" sboTerm="SBO:0000247" id="MAM03721c" name="Leucyl-Tryptophanyl-Arginine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C23H36N7O4">
+      <species metaid="M_MAM03721c" sboTerm="SBO:0000247" id="M_MAM03721c" name="Leucyl-Tryptophanyl-Arginine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C23H36N7O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03721c">
+            <rdf:Description rdf:about="#M_MAM03721c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/leutrparg"/>
@@ -115686,10 +115738,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03722c" sboTerm="SBO:0000247" id="MAM03722c" name="Leucyl-Tyrosyl-Tyrosine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C24H31N3O6">
+      <species metaid="M_MAM03722c" sboTerm="SBO:0000247" id="M_MAM03722c" name="Leucyl-Tyrosyl-Tyrosine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C24H31N3O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03722c">
+            <rdf:Description rdf:about="#M_MAM03722c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/leutyrtyr"/>
@@ -115701,10 +115753,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03723c" sboTerm="SBO:0000247" id="MAM03723c" name="Leucyl-Valine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C11H22N2O3">
+      <species metaid="M_MAM03723c" sboTerm="SBO:0000247" id="M_MAM03723c" name="Leucyl-Valine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C11H22N2O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03723c">
+            <rdf:Description rdf:about="#M_MAM03723c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/leuval"/>
@@ -115716,10 +115768,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03738c" sboTerm="SBO:0000247" id="MAM03738c" name="Lysyl-Arginyl-Leucine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="C18H38N7O4">
+      <species metaid="M_MAM03738c" sboTerm="SBO:0000247" id="M_MAM03738c" name="Lysyl-Arginyl-Leucine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="C18H38N7O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03738c">
+            <rdf:Description rdf:about="#M_MAM03738c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/lysargleu"/>
@@ -115730,10 +115782,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03739c" sboTerm="SBO:0000247" id="MAM03739c" name="Lysyl-Cysteinyl-Histidine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C15H27N6O4S">
+      <species metaid="M_MAM03739c" sboTerm="SBO:0000247" id="M_MAM03739c" name="Lysyl-Cysteinyl-Histidine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C15H27N6O4S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03739c">
+            <rdf:Description rdf:about="#M_MAM03739c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/lyscyshis"/>
@@ -115744,10 +115796,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03740c" sboTerm="SBO:0000247" id="MAM03740c" name="Lysyl-Glutaminyl-Phenylalanine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C20H32N5O5">
+      <species metaid="M_MAM03740c" sboTerm="SBO:0000247" id="M_MAM03740c" name="Lysyl-Glutaminyl-Phenylalanine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C20H32N5O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03740c">
+            <rdf:Description rdf:about="#M_MAM03740c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/lysglnphe"/>
@@ -115758,10 +115810,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03741c" sboTerm="SBO:0000247" id="MAM03741c" name="Lysyl-Glutamyl-Glutamate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C16H27N4O8">
+      <species metaid="M_MAM03741c" sboTerm="SBO:0000247" id="M_MAM03741c" name="Lysyl-Glutamyl-Glutamate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C16H27N4O8">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03741c">
+            <rdf:Description rdf:about="#M_MAM03741c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/lysgluglu"/>
@@ -115772,10 +115824,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03742c" sboTerm="SBO:0000247" id="MAM03742c" name="Lysyl-Lysyl-Lysine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="3" fbc:chemicalFormula="C18H41N6O4">
+      <species metaid="M_MAM03742c" sboTerm="SBO:0000247" id="M_MAM03742c" name="Lysyl-Lysyl-Lysine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="3" fbc:chemicalFormula="C18H41N6O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03742c">
+            <rdf:Description rdf:about="#M_MAM03742c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/lyslyslys"/>
@@ -115786,10 +115838,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03743c" sboTerm="SBO:0000247" id="MAM03743c" name="Lysyl-Phenylalanyl-Isoleucine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C21H35N4O4">
+      <species metaid="M_MAM03743c" sboTerm="SBO:0000247" id="M_MAM03743c" name="Lysyl-Phenylalanyl-Isoleucine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C21H35N4O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03743c">
+            <rdf:Description rdf:about="#M_MAM03743c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/lyspheile"/>
@@ -115800,10 +115852,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03744c" sboTerm="SBO:0000247" id="MAM03744c" name="Lysyl-Tryptophanyl-Arginine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="C23H38N8O4">
+      <species metaid="M_MAM03744c" sboTerm="SBO:0000247" id="M_MAM03744c" name="Lysyl-Tryptophanyl-Arginine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="C23H38N8O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03744c">
+            <rdf:Description rdf:about="#M_MAM03744c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/lystrparg"/>
@@ -115814,10 +115866,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03745c" sboTerm="SBO:0000247" id="MAM03745c" name="Lysyl-Tyrosyl-Isoleucine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C21H35N4O5">
+      <species metaid="M_MAM03745c" sboTerm="SBO:0000247" id="M_MAM03745c" name="Lysyl-Tyrosyl-Isoleucine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C21H35N4O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03745c">
+            <rdf:Description rdf:about="#M_MAM03745c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/lystyrile"/>
@@ -115828,10 +115880,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03746c" sboTerm="SBO:0000247" id="MAM03746c" name="Lysyl-Valyl-Phenylalanine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C20H33N4O4">
+      <species metaid="M_MAM03746c" sboTerm="SBO:0000247" id="M_MAM03746c" name="Lysyl-Valyl-Phenylalanine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C20H33N4O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03746c">
+            <rdf:Description rdf:about="#M_MAM03746c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/lysvalphe"/>
@@ -115842,10 +115894,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03747c" sboTerm="SBO:0000247" id="MAM03747c" name="Lysyl-Valyl-Tryptophan" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C22H34N5O4">
+      <species metaid="M_MAM03747c" sboTerm="SBO:0000247" id="M_MAM03747c" name="Lysyl-Valyl-Tryptophan" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C22H34N5O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03747c">
+            <rdf:Description rdf:about="#M_MAM03747c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/lysvaltrp"/>
@@ -115856,10 +115908,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03760c" sboTerm="SBO:0000247" id="MAM03760c" name="Methionyl-Arginyl-Leucine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C17H35N6O4S">
+      <species metaid="M_MAM03760c" sboTerm="SBO:0000247" id="M_MAM03760c" name="Methionyl-Arginyl-Leucine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C17H35N6O4S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03760c">
+            <rdf:Description rdf:about="#M_MAM03760c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/metargleu"/>
@@ -115870,10 +115922,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03761c" sboTerm="SBO:0000247" id="MAM03761c" name="Methionyl-Asparaginyl-Tyrosine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H26N4O6S">
+      <species metaid="M_MAM03761c" sboTerm="SBO:0000247" id="M_MAM03761c" name="Methionyl-Asparaginyl-Tyrosine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H26N4O6S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03761c">
+            <rdf:Description rdf:about="#M_MAM03761c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/metasntyr"/>
@@ -115885,10 +115937,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03762c" sboTerm="SBO:0000247" id="MAM03762c" name="Methionyl-Glutaminyl-Tyrosine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H28N4O6S">
+      <species metaid="M_MAM03762c" sboTerm="SBO:0000247" id="M_MAM03762c" name="Methionyl-Glutaminyl-Tyrosine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H28N4O6S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03762c">
+            <rdf:Description rdf:about="#M_MAM03762c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/metglntyr"/>
@@ -115900,10 +115952,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03763c" sboTerm="SBO:0000247" id="MAM03763c" name="Methionyl-Glycyl-Arginine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C13H27N6O4S">
+      <species metaid="M_MAM03763c" sboTerm="SBO:0000247" id="M_MAM03763c" name="Methionyl-Glycyl-Arginine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C13H27N6O4S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03763c">
+            <rdf:Description rdf:about="#M_MAM03763c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/metglyarg"/>
@@ -115914,10 +115966,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03764c" sboTerm="SBO:0000247" id="MAM03764c" name="Methionyl-Histidyl-Lysine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C17H31N6O4S">
+      <species metaid="M_MAM03764c" sboTerm="SBO:0000247" id="M_MAM03764c" name="Methionyl-Histidyl-Lysine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C17H31N6O4S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03764c">
+            <rdf:Description rdf:about="#M_MAM03764c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/methislys"/>
@@ -115928,10 +115980,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03767c" sboTerm="SBO:0000247" id="MAM03767c" name="Methionyl-Methionyl-Isoleucine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C16H31N3O4S2">
+      <species metaid="M_MAM03767c" sboTerm="SBO:0000247" id="M_MAM03767c" name="Methionyl-Methionyl-Isoleucine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C16H31N3O4S2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03767c">
+            <rdf:Description rdf:about="#M_MAM03767c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/metmetile"/>
@@ -115943,10 +115995,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03768c" sboTerm="SBO:0000247" id="MAM03768c" name="Methionyl-Phenylalanyl-Arginine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C20H33N6O4S">
+      <species metaid="M_MAM03768c" sboTerm="SBO:0000247" id="M_MAM03768c" name="Methionyl-Phenylalanyl-Arginine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C20H33N6O4S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03768c">
+            <rdf:Description rdf:about="#M_MAM03768c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/metphearg"/>
@@ -115957,10 +116009,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03769c" sboTerm="SBO:0000247" id="MAM03769c" name="Methionyl-Tryptophanyl-Phenylalanine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H30N4O4S">
+      <species metaid="M_MAM03769c" sboTerm="SBO:0000247" id="M_MAM03769c" name="Methionyl-Tryptophanyl-Phenylalanine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H30N4O4S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03769c">
+            <rdf:Description rdf:about="#M_MAM03769c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/mettrpphe"/>
@@ -115972,10 +116024,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03864c" sboTerm="SBO:0000247" id="MAM03864c" name="Phenylalanyl-Asparaginyl-Methionine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H26N4O5S">
+      <species metaid="M_MAM03864c" sboTerm="SBO:0000247" id="M_MAM03864c" name="Phenylalanyl-Asparaginyl-Methionine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H26N4O5S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03864c">
+            <rdf:Description rdf:about="#M_MAM03864c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pheasnmet"/>
@@ -115987,10 +116039,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03865c" sboTerm="SBO:0000247" id="MAM03865c" name="Phenylalanyl-Aspartate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C13H15N2O5">
+      <species metaid="M_MAM03865c" sboTerm="SBO:0000247" id="M_MAM03865c" name="Phenylalanyl-Aspartate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C13H15N2O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03865c">
+            <rdf:Description rdf:about="#M_MAM03865c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pheasp"/>
@@ -116001,10 +116053,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03866c" sboTerm="SBO:0000247" id="MAM03866c" name="Phenylalanyl-Glutaminyl-Phenylalanine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H28N4O5">
+      <species metaid="M_MAM03866c" sboTerm="SBO:0000247" id="M_MAM03866c" name="Phenylalanyl-Glutaminyl-Phenylalanine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H28N4O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03866c">
+            <rdf:Description rdf:about="#M_MAM03866c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pheglnphe"/>
@@ -116016,10 +116068,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03867c" sboTerm="SBO:0000247" id="MAM03867c" name="Phenylalanyl-Leucine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C15H22N2O3">
+      <species metaid="M_MAM03867c" sboTerm="SBO:0000247" id="M_MAM03867c" name="Phenylalanyl-Leucine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C15H22N2O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03867c">
+            <rdf:Description rdf:about="#M_MAM03867c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pheleu"/>
@@ -116031,10 +116083,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03868c" sboTerm="SBO:0000247" id="MAM03868c" name="Phenylalanyl-Leucyl-Aspartate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C19H26N3O6">
+      <species metaid="M_MAM03868c" sboTerm="SBO:0000247" id="M_MAM03868c" name="Phenylalanyl-Leucyl-Aspartate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C19H26N3O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03868c">
+            <rdf:Description rdf:about="#M_MAM03868c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pheleuasp"/>
@@ -116045,10 +116097,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03869c" sboTerm="SBO:0000247" id="MAM03869c" name="Phenylalanyl-Leucyl-Histidine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H29N5O4">
+      <species metaid="M_MAM03869c" sboTerm="SBO:0000247" id="M_MAM03869c" name="Phenylalanyl-Leucyl-Histidine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H29N5O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03869c">
+            <rdf:Description rdf:about="#M_MAM03869c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pheleuhis"/>
@@ -116060,10 +116112,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03870c" sboTerm="SBO:0000247" id="MAM03870c" name="Phenylalanyl-Lysyl-Alanine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C18H29N4O4">
+      <species metaid="M_MAM03870c" sboTerm="SBO:0000247" id="M_MAM03870c" name="Phenylalanyl-Lysyl-Alanine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C18H29N4O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03870c">
+            <rdf:Description rdf:about="#M_MAM03870c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/phelysala"/>
@@ -116074,10 +116126,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03871c" sboTerm="SBO:0000247" id="MAM03871c" name="Phenylalanyl-Lysyl-Proline" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C20H31N4O4">
+      <species metaid="M_MAM03871c" sboTerm="SBO:0000247" id="M_MAM03871c" name="Phenylalanyl-Lysyl-Proline" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C20H31N4O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03871c">
+            <rdf:Description rdf:about="#M_MAM03871c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/phelyspro"/>
@@ -116088,10 +116140,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03872c" sboTerm="SBO:0000247" id="MAM03872c" name="Phenylalanyl-Phenylalanine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H20N2O3">
+      <species metaid="M_MAM03872c" sboTerm="SBO:0000247" id="M_MAM03872c" name="Phenylalanyl-Phenylalanine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H20N2O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03872c">
+            <rdf:Description rdf:about="#M_MAM03872c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/phephe"/>
@@ -116103,10 +116155,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03873c" sboTerm="SBO:0000247" id="MAM03873c" name="Phenylalanyl-Phenylalaninyl-Asparagine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C22H26N4O5">
+      <species metaid="M_MAM03873c" sboTerm="SBO:0000247" id="M_MAM03873c" name="Phenylalanyl-Phenylalaninyl-Asparagine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C22H26N4O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03873c">
+            <rdf:Description rdf:about="#M_MAM03873c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/phepheasn"/>
@@ -116118,10 +116170,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03874c" sboTerm="SBO:0000247" id="MAM03874c" name="Phenylalanyl-Phenylalaninyl-Threonine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C22H27N3O5">
+      <species metaid="M_MAM03874c" sboTerm="SBO:0000247" id="M_MAM03874c" name="Phenylalanyl-Phenylalaninyl-Threonine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C22H27N3O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03874c">
+            <rdf:Description rdf:about="#M_MAM03874c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/phephethr"/>
@@ -116133,10 +116185,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03875c" sboTerm="SBO:0000247" id="MAM03875c" name="Phenylalanyl-Prolyl-Arginine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C20H31N6O4">
+      <species metaid="M_MAM03875c" sboTerm="SBO:0000247" id="M_MAM03875c" name="Phenylalanyl-Prolyl-Arginine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C20H31N6O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03875c">
+            <rdf:Description rdf:about="#M_MAM03875c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pheproarg"/>
@@ -116147,10 +116199,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03876c" sboTerm="SBO:0000247" id="MAM03876c" name="Phenylalanyl-Seryl-Tryptophan" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H26N4O5">
+      <species metaid="M_MAM03876c" sboTerm="SBO:0000247" id="M_MAM03876c" name="Phenylalanyl-Seryl-Tryptophan" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H26N4O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03876c">
+            <rdf:Description rdf:about="#M_MAM03876c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/phesertrp"/>
@@ -116162,10 +116214,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03877c" sboTerm="SBO:0000247" id="MAM03877c" name="Phenylalanyl-Threonyl-Lysine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C19H31N4O5">
+      <species metaid="M_MAM03877c" sboTerm="SBO:0000247" id="M_MAM03877c" name="Phenylalanyl-Threonyl-Lysine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C19H31N4O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03877c">
+            <rdf:Description rdf:about="#M_MAM03877c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/phethrlys"/>
@@ -116176,10 +116228,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03878c" sboTerm="SBO:0000247" id="MAM03878c" name="Phenylalanyl-Tryptophanyl-Leucine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C26H32N4O4">
+      <species metaid="M_MAM03878c" sboTerm="SBO:0000247" id="M_MAM03878c" name="Phenylalanyl-Tryptophanyl-Leucine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C26H32N4O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03878c">
+            <rdf:Description rdf:about="#M_MAM03878c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/phetrpleu"/>
@@ -116191,10 +116243,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03879c" sboTerm="SBO:0000247" id="MAM03879c" name="Phenylalanyl-Tyrosine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H20N2O4">
+      <species metaid="M_MAM03879c" sboTerm="SBO:0000247" id="M_MAM03879c" name="Phenylalanyl-Tyrosine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H20N2O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03879c">
+            <rdf:Description rdf:about="#M_MAM03879c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/phetyr"/>
@@ -116206,10 +116258,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03880c" sboTerm="SBO:0000247" id="MAM03880c" name="Phenylalanyl-Tyrosinyl-Glutamine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H28N4O6">
+      <species metaid="M_MAM03880c" sboTerm="SBO:0000247" id="M_MAM03880c" name="Phenylalanyl-Tyrosinyl-Glutamine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H28N4O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03880c">
+            <rdf:Description rdf:about="#M_MAM03880c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/phetyrgln"/>
@@ -116221,10 +116273,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03881c" sboTerm="SBO:0000247" id="MAM03881c" name="Phenylalanyl-Tyrosinyl-Lysine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C24H33N4O5">
+      <species metaid="M_MAM03881c" sboTerm="SBO:0000247" id="M_MAM03881c" name="Phenylalanyl-Tyrosinyl-Lysine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C24H33N4O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03881c">
+            <rdf:Description rdf:about="#M_MAM03881c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/phetyrlys"/>
@@ -116235,10 +116287,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03888c" sboTerm="SBO:0000247" id="MAM03888c" name="Prolyl-Arginyl-Aspartate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C15H26N6O6">
+      <species metaid="M_MAM03888c" sboTerm="SBO:0000247" id="M_MAM03888c" name="Prolyl-Arginyl-Aspartate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C15H26N6O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03888c">
+            <rdf:Description rdf:about="#M_MAM03888c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/proargasp"/>
@@ -116250,10 +116302,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03889c" sboTerm="SBO:0000247" id="MAM03889c" name="Prolyl-Arginyl-Cysteine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C14H27N6O4S">
+      <species metaid="M_MAM03889c" sboTerm="SBO:0000247" id="M_MAM03889c" name="Prolyl-Arginyl-Cysteine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C14H27N6O4S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03889c">
+            <rdf:Description rdf:about="#M_MAM03889c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/proargcys"/>
@@ -116264,10 +116316,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03890c" sboTerm="SBO:0000247" id="MAM03890c" name="Prolyl-Asparaginyl-Cysteine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C12H20N4O5S">
+      <species metaid="M_MAM03890c" sboTerm="SBO:0000247" id="M_MAM03890c" name="Prolyl-Asparaginyl-Cysteine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C12H20N4O5S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03890c">
+            <rdf:Description rdf:about="#M_MAM03890c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/proasncys"/>
@@ -116279,10 +116331,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03891c" sboTerm="SBO:0000247" id="MAM03891c" name="Prolyl-Cysteine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H14N2O3S">
+      <species metaid="M_MAM03891c" sboTerm="SBO:0000247" id="M_MAM03891c" name="Prolyl-Cysteine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H14N2O3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03891c">
+            <rdf:Description rdf:about="#M_MAM03891c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/procys"/>
@@ -116294,10 +116346,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03894c" sboTerm="SBO:0000247" id="MAM03894c" name="Prolyl-Glutaminyl-Proline" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C15H24N4O5">
+      <species metaid="M_MAM03894c" sboTerm="SBO:0000247" id="M_MAM03894c" name="Prolyl-Glutaminyl-Proline" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C15H24N4O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03894c">
+            <rdf:Description rdf:about="#M_MAM03894c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/proglnpro"/>
@@ -116309,10 +116361,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03895c" sboTerm="SBO:0000247" id="MAM03895c" name="Prolyl-Glutamatsyl-Lysine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C16H28N4O6">
+      <species metaid="M_MAM03895c" sboTerm="SBO:0000247" id="M_MAM03895c" name="Prolyl-Glutamatsyl-Lysine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C16H28N4O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03895c">
+            <rdf:Description rdf:about="#M_MAM03895c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/proglulys"/>
@@ -116324,10 +116376,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03897c" sboTerm="SBO:0000247" id="MAM03897c" name="Prolyl-Histidine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C11H16N4O3">
+      <species metaid="M_MAM03897c" sboTerm="SBO:0000247" id="M_MAM03897c" name="Prolyl-Histidine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C11H16N4O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03897c">
+            <rdf:Description rdf:about="#M_MAM03897c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/prohis"/>
@@ -116339,10 +116391,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03898c" sboTerm="SBO:0000247" id="MAM03898c" name="Prolyl-Histidyl-Tyrosine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H26N5O5">
+      <species metaid="M_MAM03898c" sboTerm="SBO:0000247" id="M_MAM03898c" name="Prolyl-Histidyl-Tyrosine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H26N5O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03898c">
+            <rdf:Description rdf:about="#M_MAM03898c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/prohistyr"/>
@@ -116353,10 +116405,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03899c" sboTerm="SBO:0000247" id="MAM03899c" name="Prolyl-Leucyl-Arginine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C17H33N6O4">
+      <species metaid="M_MAM03899c" sboTerm="SBO:0000247" id="M_MAM03899c" name="Prolyl-Leucyl-Arginine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C17H33N6O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03899c">
+            <rdf:Description rdf:about="#M_MAM03899c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/proleuarg"/>
@@ -116367,10 +116419,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03900c" sboTerm="SBO:0000247" id="MAM03900c" name="Prolyl-Lysyl-Proline" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C16H29N4O4">
+      <species metaid="M_MAM03900c" sboTerm="SBO:0000247" id="M_MAM03900c" name="Prolyl-Lysyl-Proline" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C16H29N4O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03900c">
+            <rdf:Description rdf:about="#M_MAM03900c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/prolyspro"/>
@@ -116381,10 +116433,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03901c" sboTerm="SBO:0000247" id="MAM03901c" name="Prolyl-Phenylalanine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C14H18N2O3">
+      <species metaid="M_MAM03901c" sboTerm="SBO:0000247" id="M_MAM03901c" name="Prolyl-Phenylalanine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C14H18N2O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03901c">
+            <rdf:Description rdf:about="#M_MAM03901c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/prophe"/>
@@ -116396,10 +116448,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03902c" sboTerm="SBO:0000247" id="MAM03902c" name="Prolyl-Prolyl-Arginine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C16H29N6O4">
+      <species metaid="M_MAM03902c" sboTerm="SBO:0000247" id="M_MAM03902c" name="Prolyl-Prolyl-Arginine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C16H29N6O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03902c">
+            <rdf:Description rdf:about="#M_MAM03902c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/proproarg"/>
@@ -116410,10 +116462,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03903c" sboTerm="SBO:0000247" id="MAM03903c" name="Prolyl-Prolyl-Proline" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C15H23N3O4">
+      <species metaid="M_MAM03903c" sboTerm="SBO:0000247" id="M_MAM03903c" name="Prolyl-Prolyl-Proline" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C15H23N3O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03903c">
+            <rdf:Description rdf:about="#M_MAM03903c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/propropro"/>
@@ -116425,10 +116477,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03904c" sboTerm="SBO:0000247" id="MAM03904c" name="Prolyl-Tryptophanyl-Lysine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C22H32N5O4">
+      <species metaid="M_MAM03904c" sboTerm="SBO:0000247" id="M_MAM03904c" name="Prolyl-Tryptophanyl-Lysine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C22H32N5O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03904c">
+            <rdf:Description rdf:about="#M_MAM03904c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/protrplys"/>
@@ -116439,10 +116491,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03905c" sboTerm="SBO:0000247" id="MAM03905c" name="Prolyl-Tryptophanyl-Threonine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H26N4O5">
+      <species metaid="M_MAM03905c" sboTerm="SBO:0000247" id="M_MAM03905c" name="Prolyl-Tryptophanyl-Threonine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H26N4O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03905c">
+            <rdf:Description rdf:about="#M_MAM03905c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/protrpthr"/>
@@ -116454,10 +116506,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03906c" sboTerm="SBO:0000247" id="MAM03906c" name="Prolyl-Valyl-Glutamine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C15H26N4O5">
+      <species metaid="M_MAM03906c" sboTerm="SBO:0000247" id="M_MAM03906c" name="Prolyl-Valyl-Glutamine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C15H26N4O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03906c">
+            <rdf:Description rdf:about="#M_MAM03906c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/provalgln"/>
@@ -116469,10 +116521,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03925c" sboTerm="SBO:0000247" id="MAM03925c" name="Seryl-Arginyl-Alanine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C12H25N6O5">
+      <species metaid="M_MAM03925c" sboTerm="SBO:0000247" id="M_MAM03925c" name="Seryl-Arginyl-Alanine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C12H25N6O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03925c">
+            <rdf:Description rdf:about="#M_MAM03925c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/serargala"/>
@@ -116483,10 +116535,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03926c" sboTerm="SBO:0000247" id="MAM03926c" name="Seryl-Arginyl-Tryptophan" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C20H30N7O5">
+      <species metaid="M_MAM03926c" sboTerm="SBO:0000247" id="M_MAM03926c" name="Seryl-Arginyl-Tryptophan" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C20H30N7O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03926c">
+            <rdf:Description rdf:about="#M_MAM03926c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/serargtrp"/>
@@ -116497,10 +116549,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03927c" sboTerm="SBO:0000247" id="MAM03927c" name="Seryl-Cysteinyl-Arginine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C12H25N6O5S">
+      <species metaid="M_MAM03927c" sboTerm="SBO:0000247" id="M_MAM03927c" name="Seryl-Cysteinyl-Arginine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C12H25N6O5S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03927c">
+            <rdf:Description rdf:about="#M_MAM03927c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/sercysarg"/>
@@ -116511,10 +116563,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03928c" sboTerm="SBO:0000247" id="MAM03928c" name="Seryl-Glycyl-Glutamate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H16N3O7">
+      <species metaid="M_MAM03928c" sboTerm="SBO:0000247" id="M_MAM03928c" name="Seryl-Glycyl-Glutamate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H16N3O7">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03928c">
+            <rdf:Description rdf:about="#M_MAM03928c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/serglyglu"/>
@@ -116525,10 +116577,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03929c" sboTerm="SBO:0000247" id="MAM03929c" name="Seryl-Lysyl-Histidine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C15H27N6O5">
+      <species metaid="M_MAM03929c" sboTerm="SBO:0000247" id="M_MAM03929c" name="Seryl-Lysyl-Histidine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C15H27N6O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03929c">
+            <rdf:Description rdf:about="#M_MAM03929c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/serlyshis"/>
@@ -116539,10 +116591,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03930c" sboTerm="SBO:0000247" id="MAM03930c" name="Seryl-Phenylalanyl-Lysine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C18H29N4O5">
+      <species metaid="M_MAM03930c" sboTerm="SBO:0000247" id="M_MAM03930c" name="Seryl-Phenylalanyl-Lysine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C18H29N4O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03930c">
+            <rdf:Description rdf:about="#M_MAM03930c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/serphelys"/>
@@ -116553,10 +116605,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03931c" sboTerm="SBO:0000247" id="MAM03931c" name="Seryl-Tryptophanyl-Histidine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H24N6O5">
+      <species metaid="M_MAM03931c" sboTerm="SBO:0000247" id="M_MAM03931c" name="Seryl-Tryptophanyl-Histidine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H24N6O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03931c">
+            <rdf:Description rdf:about="#M_MAM03931c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/sertrphis"/>
@@ -116568,10 +116620,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03983c" sboTerm="SBO:0000247" id="MAM03983c" name="Threonyl-Arginyl-Tyrosine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C19H31N6O6">
+      <species metaid="M_MAM03983c" sboTerm="SBO:0000247" id="M_MAM03983c" name="Threonyl-Arginyl-Tyrosine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C19H31N6O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03983c">
+            <rdf:Description rdf:about="#M_MAM03983c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/thrargtyr"/>
@@ -116582,10 +116634,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03984c" sboTerm="SBO:0000247" id="MAM03984c" name="Threonyl-Asparaginyl-Tyrosine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C17H24N4O7">
+      <species metaid="M_MAM03984c" sboTerm="SBO:0000247" id="M_MAM03984c" name="Threonyl-Asparaginyl-Tyrosine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C17H24N4O7">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03984c">
+            <rdf:Description rdf:about="#M_MAM03984c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/thrasntyr"/>
@@ -116597,10 +116649,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03986c" sboTerm="SBO:0000247" id="MAM03986c" name="Threonyl-Glutaminyl-Glutamate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C14H23N4O8">
+      <species metaid="M_MAM03986c" sboTerm="SBO:0000247" id="M_MAM03986c" name="Threonyl-Glutaminyl-Glutamate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C14H23N4O8">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03986c">
+            <rdf:Description rdf:about="#M_MAM03986c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/thrglnglu"/>
@@ -116611,10 +116663,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03987c" sboTerm="SBO:0000247" id="MAM03987c" name="Threonyl-Glutaminyl-Tyrosine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H26N4O7">
+      <species metaid="M_MAM03987c" sboTerm="SBO:0000247" id="M_MAM03987c" name="Threonyl-Glutaminyl-Tyrosine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H26N4O7">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03987c">
+            <rdf:Description rdf:about="#M_MAM03987c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/thrglntyr"/>
@@ -116626,10 +116678,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03988c" sboTerm="SBO:0000247" id="MAM03988c" name="Threonyl-Histidinyl-Histidine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C16H23N7O5">
+      <species metaid="M_MAM03988c" sboTerm="SBO:0000247" id="M_MAM03988c" name="Threonyl-Histidinyl-Histidine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C16H23N7O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03988c">
+            <rdf:Description rdf:about="#M_MAM03988c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/thrhishis"/>
@@ -116641,10 +116693,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03989c" sboTerm="SBO:0000247" id="MAM03989c" name="Threonyl-Isoleucyl-Arginine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C16H33N6O5">
+      <species metaid="M_MAM03989c" sboTerm="SBO:0000247" id="M_MAM03989c" name="Threonyl-Isoleucyl-Arginine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C16H33N6O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03989c">
+            <rdf:Description rdf:about="#M_MAM03989c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/thrilearg"/>
@@ -116655,10 +116707,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03990c" sboTerm="SBO:0000247" id="MAM03990c" name="Threonyl-Methionyl-Arginine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C15H31N6O5S">
+      <species metaid="M_MAM03990c" sboTerm="SBO:0000247" id="M_MAM03990c" name="Threonyl-Methionyl-Arginine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C15H31N6O5S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03990c">
+            <rdf:Description rdf:about="#M_MAM03990c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/thrmetarg"/>
@@ -116669,10 +116721,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03991c" sboTerm="SBO:0000247" id="MAM03991c" name="Threonyl-Phenylalanyl-Arginine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C19H31N6O5">
+      <species metaid="M_MAM03991c" sboTerm="SBO:0000247" id="M_MAM03991c" name="Threonyl-Phenylalanyl-Arginine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C19H31N6O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03991c">
+            <rdf:Description rdf:about="#M_MAM03991c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/thrphearg"/>
@@ -116683,10 +116735,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03992c" sboTerm="SBO:0000247" id="MAM03992c" name="Threonyl-Seryl-Arginine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C13H27N6O6">
+      <species metaid="M_MAM03992c" sboTerm="SBO:0000247" id="M_MAM03992c" name="Threonyl-Seryl-Arginine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C13H27N6O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03992c">
+            <rdf:Description rdf:about="#M_MAM03992c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/thrserarg"/>
@@ -116697,10 +116749,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03993c" sboTerm="SBO:0000247" id="MAM03993c" name="Threonyl-Threonyl-Arginine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C14H29N6O6">
+      <species metaid="M_MAM03993c" sboTerm="SBO:0000247" id="M_MAM03993c" name="Threonyl-Threonyl-Arginine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C14H29N6O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03993c">
+            <rdf:Description rdf:about="#M_MAM03993c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/thrthrarg"/>
@@ -116711,10 +116763,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03994c" sboTerm="SBO:0000247" id="MAM03994c" name="Threonyl-Tyrosyl-Methionine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H27N3O6S">
+      <species metaid="M_MAM03994c" sboTerm="SBO:0000247" id="M_MAM03994c" name="Threonyl-Tyrosyl-Methionine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H27N3O6S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03994c">
+            <rdf:Description rdf:about="#M_MAM03994c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/thrtyrmet"/>
@@ -116726,10 +116778,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM04008c" sboTerm="SBO:0000247" id="MAM04008c" name="Tryptophanyl-Alanyl-Proline" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H24N4O4">
+      <species metaid="M_MAM04008c" sboTerm="SBO:0000247" id="M_MAM04008c" name="Tryptophanyl-Alanyl-Proline" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H24N4O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM04008c">
+            <rdf:Description rdf:about="#M_MAM04008c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/trpalapro"/>
@@ -116741,10 +116793,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM04009c" sboTerm="SBO:0000247" id="MAM04009c" name="Tryptophanyl-Arginyl-Alanine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C20H30N7O4">
+      <species metaid="M_MAM04009c" sboTerm="SBO:0000247" id="M_MAM04009c" name="Tryptophanyl-Arginyl-Alanine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C20H30N7O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM04009c">
+            <rdf:Description rdf:about="#M_MAM04009c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/trpargala"/>
@@ -116755,10 +116807,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM04010c" sboTerm="SBO:0000247" id="MAM04010c" name="Tryptophanyl-Aspartyl-Aspartate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C19H20N4O8">
+      <species metaid="M_MAM04010c" sboTerm="SBO:0000247" id="M_MAM04010c" name="Tryptophanyl-Aspartyl-Aspartate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C19H20N4O8">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM04010c">
+            <rdf:Description rdf:about="#M_MAM04010c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/trpaspasp"/>
@@ -116769,10 +116821,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM04011c" sboTerm="SBO:0000247" id="MAM04011c" name="Tryptophanyl-Glutaminyl-Glutamine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H28N6O6">
+      <species metaid="M_MAM04011c" sboTerm="SBO:0000247" id="M_MAM04011c" name="Tryptophanyl-Glutaminyl-Glutamine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H28N6O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM04011c">
+            <rdf:Description rdf:about="#M_MAM04011c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/trpglngln"/>
@@ -116784,10 +116836,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM04012c" sboTerm="SBO:0000247" id="MAM04012c" name="Tryptophanyl-Glutamyl-Glycine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H21N4O6">
+      <species metaid="M_MAM04012c" sboTerm="SBO:0000247" id="M_MAM04012c" name="Tryptophanyl-Glutamyl-Glycine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H21N4O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM04012c">
+            <rdf:Description rdf:about="#M_MAM04012c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/trpglugly"/>
@@ -116798,10 +116850,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM04013c" sboTerm="SBO:0000247" id="MAM04013c" name="Tryptophanyl-Glutamyl-Leucine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C22H29N4O6">
+      <species metaid="M_MAM04013c" sboTerm="SBO:0000247" id="M_MAM04013c" name="Tryptophanyl-Glutamyl-Leucine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C22H29N4O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM04013c">
+            <rdf:Description rdf:about="#M_MAM04013c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/trpgluleu"/>
@@ -116812,10 +116864,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM04014c" sboTerm="SBO:0000247" id="MAM04014c" name="Tryptophanyl-Glutamyl-Proline" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C21H25N4O6">
+      <species metaid="M_MAM04014c" sboTerm="SBO:0000247" id="M_MAM04014c" name="Tryptophanyl-Glutamyl-Proline" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C21H25N4O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM04014c">
+            <rdf:Description rdf:about="#M_MAM04014c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/trpglupro"/>
@@ -116826,10 +116878,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM04015c" sboTerm="SBO:0000247" id="MAM04015c" name="Tryptophanyl-Glutamyl-Tyrosine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C25H27N4O7">
+      <species metaid="M_MAM04015c" sboTerm="SBO:0000247" id="M_MAM04015c" name="Tryptophanyl-Glutamyl-Tyrosine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C25H27N4O7">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM04015c">
+            <rdf:Description rdf:about="#M_MAM04015c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/trpglutyr"/>
@@ -116840,10 +116892,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM04017c" sboTerm="SBO:0000247" id="MAM04017c" name="Tryptophanyl-Glycyl-Leucine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H26N4O4">
+      <species metaid="M_MAM04017c" sboTerm="SBO:0000247" id="M_MAM04017c" name="Tryptophanyl-Glycyl-Leucine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H26N4O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM04017c">
+            <rdf:Description rdf:about="#M_MAM04017c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/trpglyleu"/>
@@ -116855,10 +116907,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM04018c" sboTerm="SBO:0000247" id="MAM04018c" name="Tryptophanyl-Glycyl-Phenylalanine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C22H24N4O4">
+      <species metaid="M_MAM04018c" sboTerm="SBO:0000247" id="M_MAM04018c" name="Tryptophanyl-Glycyl-Phenylalanine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C22H24N4O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM04018c">
+            <rdf:Description rdf:about="#M_MAM04018c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/trpglyphe"/>
@@ -116870,10 +116922,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM04019c" sboTerm="SBO:0000247" id="MAM04019c" name="Tryptophanyl-Glycyl-Valine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H24N4O4">
+      <species metaid="M_MAM04019c" sboTerm="SBO:0000247" id="M_MAM04019c" name="Tryptophanyl-Glycyl-Valine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H24N4O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM04019c">
+            <rdf:Description rdf:about="#M_MAM04019c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/trpglyval"/>
@@ -116885,10 +116937,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM04020c" sboTerm="SBO:0000247" id="MAM04020c" name="Tryptophanyl-Histidyl-Methionine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C22H28N6O4S">
+      <species metaid="M_MAM04020c" sboTerm="SBO:0000247" id="M_MAM04020c" name="Tryptophanyl-Histidyl-Methionine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C22H28N6O4S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM04020c">
+            <rdf:Description rdf:about="#M_MAM04020c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/trphismet"/>
@@ -116900,10 +116952,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM04021c" sboTerm="SBO:0000247" id="MAM04021c" name="Tryptophanyl-Isoleucyl-Lysine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C23H36N5O4">
+      <species metaid="M_MAM04021c" sboTerm="SBO:0000247" id="M_MAM04021c" name="Tryptophanyl-Isoleucyl-Lysine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C23H36N5O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM04021c">
+            <rdf:Description rdf:about="#M_MAM04021c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/trpilelys"/>
@@ -116914,10 +116966,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM04022c" sboTerm="SBO:0000247" id="MAM04022c" name="Tryptophanyl-Isoleucyl-Tryptophan" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C28H33N5O4">
+      <species metaid="M_MAM04022c" sboTerm="SBO:0000247" id="M_MAM04022c" name="Tryptophanyl-Isoleucyl-Tryptophan" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C28H33N5O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM04022c">
+            <rdf:Description rdf:about="#M_MAM04022c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/trpiletrp"/>
@@ -116929,10 +116981,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM04023c" sboTerm="SBO:0000247" id="MAM04023c" name="Tryptophanyl-Leucyl-Valine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C22H32N4O4">
+      <species metaid="M_MAM04023c" sboTerm="SBO:0000247" id="M_MAM04023c" name="Tryptophanyl-Leucyl-Valine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C22H32N4O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM04023c">
+            <rdf:Description rdf:about="#M_MAM04023c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/trpleuval"/>
@@ -116944,10 +116996,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM04024c" sboTerm="SBO:0000247" id="MAM04024c" name="Tryptophanyl-Lysine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C17H25N4O3">
+      <species metaid="M_MAM04024c" sboTerm="SBO:0000247" id="M_MAM04024c" name="Tryptophanyl-Lysine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C17H25N4O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM04024c">
+            <rdf:Description rdf:about="#M_MAM04024c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/trplys"/>
@@ -116958,10 +117010,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM04025c" sboTerm="SBO:0000247" id="MAM04025c" name="Tryptophanyl-Methionyl-Arginine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C22H34N7O4S">
+      <species metaid="M_MAM04025c" sboTerm="SBO:0000247" id="M_MAM04025c" name="Tryptophanyl-Methionyl-Arginine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C22H34N7O4S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM04025c">
+            <rdf:Description rdf:about="#M_MAM04025c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/trpmetarg"/>
@@ -116972,10 +117024,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM04026c" sboTerm="SBO:0000247" id="MAM04026c" name="Tryptophanyl-Methionyl-Valine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H30N4O4S">
+      <species metaid="M_MAM04026c" sboTerm="SBO:0000247" id="M_MAM04026c" name="Tryptophanyl-Methionyl-Valine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H30N4O4S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM04026c">
+            <rdf:Description rdf:about="#M_MAM04026c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/trpmetval"/>
@@ -116987,10 +117039,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM04027c" sboTerm="SBO:0000247" id="MAM04027c" name="Tryptophanyl-Phenylalanine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H21N3O3">
+      <species metaid="M_MAM04027c" sboTerm="SBO:0000247" id="M_MAM04027c" name="Tryptophanyl-Phenylalanine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H21N3O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM04027c">
+            <rdf:Description rdf:about="#M_MAM04027c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/trpphe"/>
@@ -117002,10 +117054,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM04028c" sboTerm="SBO:0000247" id="MAM04028c" name="Tryptophanyl-Prolyl-Glycine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H21N4O4">
+      <species metaid="M_MAM04028c" sboTerm="SBO:0000247" id="M_MAM04028c" name="Tryptophanyl-Prolyl-Glycine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H21N4O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM04028c">
+            <rdf:Description rdf:about="#M_MAM04028c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/trpprogly"/>
@@ -117016,10 +117068,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM04029c" sboTerm="SBO:0000247" id="MAM04029c" name="Tryptophanyl-Prolyl-Leucine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C22H30N4O4">
+      <species metaid="M_MAM04029c" sboTerm="SBO:0000247" id="M_MAM04029c" name="Tryptophanyl-Prolyl-Leucine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C22H30N4O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM04029c">
+            <rdf:Description rdf:about="#M_MAM04029c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/trpproleu"/>
@@ -117031,10 +117083,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM04030c" sboTerm="SBO:0000247" id="MAM04030c" name="Tryptophanyl-Prolyl-Valine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H28N4O4">
+      <species metaid="M_MAM04030c" sboTerm="SBO:0000247" id="M_MAM04030c" name="Tryptophanyl-Prolyl-Valine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H28N4O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM04030c">
+            <rdf:Description rdf:about="#M_MAM04030c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/trpproval"/>
@@ -117046,10 +117098,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM04031c" sboTerm="SBO:0000247" id="MAM04031c" name="Tryptophanyl-Seryl-Tyrosine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H26N4O6">
+      <species metaid="M_MAM04031c" sboTerm="SBO:0000247" id="M_MAM04031c" name="Tryptophanyl-Seryl-Tyrosine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H26N4O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM04031c">
+            <rdf:Description rdf:about="#M_MAM04031c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/trpsertyr"/>
@@ -117061,10 +117113,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM04032c" sboTerm="SBO:0000247" id="MAM04032c" name="Tryptophanyl-Threonyl-Glutamate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H25N4O7">
+      <species metaid="M_MAM04032c" sboTerm="SBO:0000247" id="M_MAM04032c" name="Tryptophanyl-Threonyl-Glutamate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H25N4O7">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM04032c">
+            <rdf:Description rdf:about="#M_MAM04032c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/trpthrglu"/>
@@ -117075,10 +117127,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM04033c" sboTerm="SBO:0000247" id="MAM04033c" name="Tryptophanyl-Threonyl-Isoleucine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H30N4O5">
+      <species metaid="M_MAM04033c" sboTerm="SBO:0000247" id="M_MAM04033c" name="Tryptophanyl-Threonyl-Isoleucine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H30N4O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM04033c">
+            <rdf:Description rdf:about="#M_MAM04033c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/trpthrile"/>
@@ -117090,10 +117142,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM04034c" sboTerm="SBO:0000247" id="MAM04034c" name="Tryptophanyl-Threonyl-Tyrosine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C24H28N4O6">
+      <species metaid="M_MAM04034c" sboTerm="SBO:0000247" id="M_MAM04034c" name="Tryptophanyl-Threonyl-Tyrosine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C24H28N4O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM04034c">
+            <rdf:Description rdf:about="#M_MAM04034c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/trpthrtyr"/>
@@ -117105,10 +117157,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM04035c" sboTerm="SBO:0000247" id="MAM04035c" name="Tryptophanyl-Tyrosyl-Glutamine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H29N5O6">
+      <species metaid="M_MAM04035c" sboTerm="SBO:0000247" id="M_MAM04035c" name="Tryptophanyl-Tyrosyl-Glutamine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H29N5O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM04035c">
+            <rdf:Description rdf:about="#M_MAM04035c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/trptyrgln"/>
@@ -117120,10 +117172,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM04036c" sboTerm="SBO:0000247" id="MAM04036c" name="Tryptophanyl-Tyrosyl-Tyrosine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C29H30N4O6">
+      <species metaid="M_MAM04036c" sboTerm="SBO:0000247" id="M_MAM04036c" name="Tryptophanyl-Tyrosyl-Tyrosine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C29H30N4O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM04036c">
+            <rdf:Description rdf:about="#M_MAM04036c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/trptyrtyr"/>
@@ -117135,10 +117187,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM04037c" sboTerm="SBO:0000247" id="MAM04037c" name="Tryptophanyl-Valyl-Aspartate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H25N4O6">
+      <species metaid="M_MAM04037c" sboTerm="SBO:0000247" id="M_MAM04037c" name="Tryptophanyl-Valyl-Aspartate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H25N4O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM04037c">
+            <rdf:Description rdf:about="#M_MAM04037c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/trpvalasp"/>
@@ -117149,10 +117201,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM04043c" sboTerm="SBO:0000247" id="MAM04043c" name="Tyrosyl-Alanine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C12H16N2O4">
+      <species metaid="M_MAM04043c" sboTerm="SBO:0000247" id="M_MAM04043c" name="Tyrosyl-Alanine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C12H16N2O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM04043c">
+            <rdf:Description rdf:about="#M_MAM04043c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/tyrala"/>
@@ -117164,10 +117216,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM04044c" sboTerm="SBO:0000247" id="MAM04044c" name="Tyrosyl-Alaninyl-Phenylalanine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H25N3O5">
+      <species metaid="M_MAM04044c" sboTerm="SBO:0000247" id="M_MAM04044c" name="Tyrosyl-Alaninyl-Phenylalanine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H25N3O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM04044c">
+            <rdf:Description rdf:about="#M_MAM04044c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/tyralaphe"/>
@@ -117179,10 +117231,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM04045c" sboTerm="SBO:0000247" id="MAM04045c" name="Tyrosyl-Arginyl-Glutamate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H30N6O7">
+      <species metaid="M_MAM04045c" sboTerm="SBO:0000247" id="M_MAM04045c" name="Tyrosyl-Arginyl-Glutamate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H30N6O7">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM04045c">
+            <rdf:Description rdf:about="#M_MAM04045c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/tyrargglu"/>
@@ -117194,10 +117246,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM04046c" sboTerm="SBO:0000247" id="MAM04046c" name="Tyrosyl-Arginyl-Serine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C18H29N6O6">
+      <species metaid="M_MAM04046c" sboTerm="SBO:0000247" id="M_MAM04046c" name="Tyrosyl-Arginyl-Serine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C18H29N6O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM04046c">
+            <rdf:Description rdf:about="#M_MAM04046c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/tyrargser"/>
@@ -117208,10 +117260,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM04047c" sboTerm="SBO:0000247" id="MAM04047c" name="Tyrosyl-Aspartyl-Arginine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H28N6O7">
+      <species metaid="M_MAM04047c" sboTerm="SBO:0000247" id="M_MAM04047c" name="Tyrosyl-Aspartyl-Arginine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H28N6O7">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM04047c">
+            <rdf:Description rdf:about="#M_MAM04047c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/tyrasparg"/>
@@ -117223,10 +117275,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM04048c" sboTerm="SBO:0000247" id="MAM04048c" name="Tyrosyl-Cysteinyl-Glycine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C14H19N3O5S">
+      <species metaid="M_MAM04048c" sboTerm="SBO:0000247" id="M_MAM04048c" name="Tyrosyl-Cysteinyl-Glycine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C14H19N3O5S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM04048c">
+            <rdf:Description rdf:about="#M_MAM04048c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/tyrcysgly"/>
@@ -117238,10 +117290,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM04049c" sboTerm="SBO:0000247" id="MAM04049c" name="Tyrosyl-Cysteinyl-Threonine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C16H23N3O6S">
+      <species metaid="M_MAM04049c" sboTerm="SBO:0000247" id="M_MAM04049c" name="Tyrosyl-Cysteinyl-Threonine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C16H23N3O6S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM04049c">
+            <rdf:Description rdf:about="#M_MAM04049c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/tyrcysthr"/>
@@ -117253,10 +117305,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM04050c" sboTerm="SBO:0000247" id="MAM04050c" name="Tyrosyl-Glutamate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C14H17N2O6">
+      <species metaid="M_MAM04050c" sboTerm="SBO:0000247" id="M_MAM04050c" name="Tyrosyl-Glutamate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C14H17N2O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM04050c">
+            <rdf:Description rdf:about="#M_MAM04050c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/tyrglu"/>
@@ -117267,10 +117319,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM04051c" sboTerm="SBO:0000247" id="MAM04051c" name="Tyrosyl-Leucyl-Arginine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C21H35N6O5">
+      <species metaid="M_MAM04051c" sboTerm="SBO:0000247" id="M_MAM04051c" name="Tyrosyl-Leucyl-Arginine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C21H35N6O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM04051c">
+            <rdf:Description rdf:about="#M_MAM04051c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/tyrleuarg"/>
@@ -117281,10 +117333,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM04052c" sboTerm="SBO:0000247" id="MAM04052c" name="Tyrosyl-Phenylalanyl-Tyrosine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H29N3O6">
+      <species metaid="M_MAM04052c" sboTerm="SBO:0000247" id="M_MAM04052c" name="Tyrosyl-Phenylalanyl-Tyrosine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H29N3O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM04052c">
+            <rdf:Description rdf:about="#M_MAM04052c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/tyrphetyr"/>
@@ -117296,10 +117348,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM04053c" sboTerm="SBO:0000247" id="MAM04053c" name="Tyrosyl-Threonine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C13H18N2O5">
+      <species metaid="M_MAM04053c" sboTerm="SBO:0000247" id="M_MAM04053c" name="Tyrosyl-Threonine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C13H18N2O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM04053c">
+            <rdf:Description rdf:about="#M_MAM04053c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/tyrthr"/>
@@ -117311,10 +117363,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM04054c" sboTerm="SBO:0000247" id="MAM04054c" name="Tyrosyl-Tryptophanyl-Phenylalanine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C29H30N4O5">
+      <species metaid="M_MAM04054c" sboTerm="SBO:0000247" id="M_MAM04054c" name="Tyrosyl-Tryptophanyl-Phenylalanine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C29H30N4O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM04054c">
+            <rdf:Description rdf:about="#M_MAM04054c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/tyrtrpphe"/>
@@ -117326,10 +117378,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM04055c" sboTerm="SBO:0000247" id="MAM04055c" name="Tyrosyl-Tyrosine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H20N2O5">
+      <species metaid="M_MAM04055c" sboTerm="SBO:0000247" id="M_MAM04055c" name="Tyrosyl-Tyrosine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H20N2O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM04055c">
+            <rdf:Description rdf:about="#M_MAM04055c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/tyrtyr"/>
@@ -117341,10 +117393,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM04056c" sboTerm="SBO:0000247" id="MAM04056c" name="Tyrosyl-Valyl-Methionine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H29N3O5S">
+      <species metaid="M_MAM04056c" sboTerm="SBO:0000247" id="M_MAM04056c" name="Tyrosyl-Valyl-Methionine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H29N3O5S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM04056c">
+            <rdf:Description rdf:about="#M_MAM04056c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/tyrvalmet"/>
@@ -117356,10 +117408,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM04062c" sboTerm="SBO:0000247" id="MAM04062c" name="Valyl-Arginyl-Glycine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C13H27N6O4">
+      <species metaid="M_MAM04062c" sboTerm="SBO:0000247" id="M_MAM04062c" name="Valyl-Arginyl-Glycine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C13H27N6O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM04062c">
+            <rdf:Description rdf:about="#M_MAM04062c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/valarggly"/>
@@ -117370,10 +117422,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM04063c" sboTerm="SBO:0000247" id="MAM04063c" name="Valyl-Histidyl-Asparagine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C15H24N6O5">
+      <species metaid="M_MAM04063c" sboTerm="SBO:0000247" id="M_MAM04063c" name="Valyl-Histidyl-Asparagine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C15H24N6O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM04063c">
+            <rdf:Description rdf:about="#M_MAM04063c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/valhisasn"/>
@@ -117385,10 +117437,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM04064c" sboTerm="SBO:0000247" id="MAM04064c" name="Valyl-Leucyl-Phenylalanine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H31N3O4">
+      <species metaid="M_MAM04064c" sboTerm="SBO:0000247" id="M_MAM04064c" name="Valyl-Leucyl-Phenylalanine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H31N3O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM04064c">
+            <rdf:Description rdf:about="#M_MAM04064c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/valleuphe"/>
@@ -117400,10 +117452,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM04065c" sboTerm="SBO:0000247" id="MAM04065c" name="Valyl-Lysyl-Tyrosine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C20H33N4O5">
+      <species metaid="M_MAM04065c" sboTerm="SBO:0000247" id="M_MAM04065c" name="Valyl-Lysyl-Tyrosine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C20H33N4O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM04065c">
+            <rdf:Description rdf:about="#M_MAM04065c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/vallystyr"/>
@@ -117414,10 +117466,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM04066c" sboTerm="SBO:0000247" id="MAM04066c" name="Valyl-Phenylalanyl-Arginine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C20H33N6O4">
+      <species metaid="M_MAM04066c" sboTerm="SBO:0000247" id="M_MAM04066c" name="Valyl-Phenylalanyl-Arginine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C20H33N6O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM04066c">
+            <rdf:Description rdf:about="#M_MAM04066c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/valphearg"/>
@@ -117428,10 +117480,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM04067c" sboTerm="SBO:0000247" id="MAM04067c" name="Valyl-Prolyl-Tryptophan" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H28N4O4">
+      <species metaid="M_MAM04067c" sboTerm="SBO:0000247" id="M_MAM04067c" name="Valyl-Prolyl-Tryptophan" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H28N4O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM04067c">
+            <rdf:Description rdf:about="#M_MAM04067c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/valprotrp"/>
@@ -117443,10 +117495,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM04068c" sboTerm="SBO:0000247" id="MAM04068c" name="Valyl-Seryl-Arginine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C14H29N6O5">
+      <species metaid="M_MAM04068c" sboTerm="SBO:0000247" id="M_MAM04068c" name="Valyl-Seryl-Arginine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C14H29N6O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM04068c">
+            <rdf:Description rdf:about="#M_MAM04068c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/valserarg"/>
@@ -117457,10 +117509,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM04069c" sboTerm="SBO:0000247" id="MAM04069c" name="Valyl-Tryptophanyl-Phenylalanine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H30N4O4">
+      <species metaid="M_MAM04069c" sboTerm="SBO:0000247" id="M_MAM04069c" name="Valyl-Tryptophanyl-Phenylalanine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H30N4O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM04069c">
+            <rdf:Description rdf:about="#M_MAM04069c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/valtrpphe"/>
@@ -117472,10 +117524,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM04070c" sboTerm="SBO:0000247" id="MAM04070c" name="Valyl-Tryptophanyl-Valine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H30N4O4">
+      <species metaid="M_MAM04070c" sboTerm="SBO:0000247" id="M_MAM04070c" name="Valyl-Tryptophanyl-Valine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H30N4O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM04070c">
+            <rdf:Description rdf:about="#M_MAM04070c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/valtrpval"/>
@@ -117487,10 +117539,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM04071c" sboTerm="SBO:0000247" id="MAM04071c" name="Valyl-Valine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H20N2O3">
+      <species metaid="M_MAM04071c" sboTerm="SBO:0000247" id="M_MAM04071c" name="Valyl-Valine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H20N2O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM04071c">
+            <rdf:Description rdf:about="#M_MAM04071c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/valval"/>
@@ -117502,10 +117554,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM04016c" sboTerm="SBO:0000247" id="MAM04016c" name="Tryptophanyl-Glycyl-Aspartate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C17H19N4O6">
+      <species metaid="M_MAM04016c" sboTerm="SBO:0000247" id="M_MAM04016c" name="Tryptophanyl-Glycyl-Aspartate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C17H19N4O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM04016c">
+            <rdf:Description rdf:about="#M_MAM04016c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/trpglyasp"/>
@@ -117516,10 +117568,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03626c" sboTerm="SBO:0000247" id="MAM03626c" name="Glycylleucine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H16N2O3">
+      <species metaid="M_MAM03626c" sboTerm="SBO:0000247" id="M_MAM03626c" name="Glycylleucine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H16N2O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03626c">
+            <rdf:Description rdf:about="#M_MAM03626c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/glyleu"/>
@@ -117536,10 +117588,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM04077c" sboTerm="SBO:0000247" id="MAM04077c" name="1-Gamma-Linolenoyl-Cholesterol, Cholesterol-Ester (18:3, Delta 6, 9, 12)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C45H74O2">
+      <species metaid="M_MAM04077c" sboTerm="SBO:0000247" id="M_MAM04077c" name="1-Gamma-Linolenoyl-Cholesterol, Cholesterol-Ester (18:3, Delta 6, 9, 12)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C45H74O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM04077c">
+            <rdf:Description rdf:about="#M_MAM04077c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/xolest183_hs"/>
@@ -117551,10 +117603,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM04076c" sboTerm="SBO:0000247" id="MAM04076c" name="1-Linoleoyl-Cholesterol, Cholesterol-Ester (18:2, Delta 9, 12)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C45H76O2">
+      <species metaid="M_MAM04076c" sboTerm="SBO:0000247" id="M_MAM04076c" name="1-Linoleoyl-Cholesterol, Cholesterol-Ester (18:2, Delta 9, 12)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C45H76O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM04076c">
+            <rdf:Description rdf:about="#M_MAM04076c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/xolest182_hs"/>
@@ -117566,10 +117618,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM04075c" sboTerm="SBO:0000247" id="MAM04075c" name="1-Vaccenoyl-Cholesterol, Cholesterol-Ester (18:1, Delta 11)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C45H78O2">
+      <species metaid="M_MAM04075c" sboTerm="SBO:0000247" id="M_MAM04075c" name="1-Vaccenoyl-Cholesterol, Cholesterol-Ester (18:1, Delta 11)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C45H78O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM04075c">
+            <rdf:Description rdf:about="#M_MAM04075c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/xolest181_hs"/>
@@ -117580,10 +117632,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM04079c" sboTerm="SBO:0000247" id="MAM04079c" name="1-Timnodnoyl-Cholesterol, Cholesterol-Ester (20:5, Delta 5,8,11,14,17)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C47H74O2">
+      <species metaid="M_MAM04079c" sboTerm="SBO:0000247" id="M_MAM04079c" name="1-Timnodnoyl-Cholesterol, Cholesterol-Ester (20:5, Delta 5,8,11,14,17)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C47H74O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM04079c">
+            <rdf:Description rdf:about="#M_MAM04079c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/xolest205_hs"/>
@@ -117595,10 +117647,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM04078c" sboTerm="SBO:0000247" id="MAM04078c" name="Cholesteryl Arachidonate, Cholesterol-Ester (20:4, Delta 5,8,11,14)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C47H76O2">
+      <species metaid="M_MAM04078c" sboTerm="SBO:0000247" id="M_MAM04078c" name="Cholesteryl Arachidonate, Cholesterol-Ester (20:4, Delta 5,8,11,14)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C47H76O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM04078c">
+            <rdf:Description rdf:about="#M_MAM04078c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/xolest204_hs"/>
@@ -117609,10 +117661,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM04080c" sboTerm="SBO:0000247" id="MAM04080c" name="Cholesteryl Docosahexanoate, Cholesterol-Ester (22:6, Delta 4,7,10,13,16,19)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C49H76O2">
+      <species metaid="M_MAM04080c" sboTerm="SBO:0000247" id="M_MAM04080c" name="Cholesteryl Docosahexanoate, Cholesterol-Ester (22:6, Delta 4,7,10,13,16,19)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C49H76O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM04080c">
+            <rdf:Description rdf:about="#M_MAM04080c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/xolest226_hs"/>
@@ -117624,10 +117676,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02908e" sboTerm="SBO:0000247" id="MAM02908e" name="SM pool" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H48N2O5PRCO">
+      <species metaid="M_MAM02908e" sboTerm="SBO:0000247" id="M_MAM02908e" name="SM pool" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H48N2O5PRCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02908e">
+            <rdf:Description rdf:about="#M_MAM02908e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/sphmyln_hs"/>
@@ -117642,10 +117694,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03684e" sboTerm="SBO:0000247" id="MAM03684e" name="Hexanoate (N-C6:0)" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H11O2">
+      <species metaid="M_MAM03684e" sboTerm="SBO:0000247" id="M_MAM03684e" name="Hexanoate (N-C6:0)" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H11O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03684e">
+            <rdf:Description rdf:about="#M_MAM03684e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hxa"/>
@@ -117657,10 +117709,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01954c" sboTerm="SBO:0000247" id="MAM01954c" name="glcnac-alpha-1,4-core 1" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C22H37N2O15X">
+      <species metaid="M_MAM01954c" sboTerm="SBO:0000247" id="M_MAM01954c" name="glcnac-alpha-1,4-core 1" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C22H37N2O15X">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01954c">
+            <rdf:Description rdf:about="#M_MAM01954c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/gncore1"/>
@@ -117672,10 +117724,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01954e" sboTerm="SBO:0000247" id="MAM01954e" name="glcnac-alpha-1,4-core 1" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C22H37N2O15X">
+      <species metaid="M_MAM01954e" sboTerm="SBO:0000247" id="M_MAM01954e" name="glcnac-alpha-1,4-core 1" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C22H37N2O15X">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01954e">
+            <rdf:Description rdf:about="#M_MAM01954e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/gncore1"/>
@@ -117687,10 +117739,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03394c" sboTerm="SBO:0000247" id="MAM03394c" name="L-Homocystine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H16N2O4S2">
+      <species metaid="M_MAM03394c" sboTerm="SBO:0000247" id="M_MAM03394c" name="L-Homocystine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H16N2O4S2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03394c">
+            <rdf:Description rdf:about="#M_MAM03394c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/Lhcystin"/>
@@ -117702,10 +117754,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03394e" sboTerm="SBO:0000247" id="MAM03394e" name="L-Homocystine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H16N2O4S2">
+      <species metaid="M_MAM03394e" sboTerm="SBO:0000247" id="M_MAM03394e" name="L-Homocystine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H16N2O4S2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03394e">
+            <rdf:Description rdf:about="#M_MAM03394e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/Lhcystin"/>
@@ -117717,10 +117769,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02543e" sboTerm="SBO:0000247" id="MAM02543e" name="N-acetylneuraminate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C11H18NO9">
+      <species metaid="M_MAM02543e" sboTerm="SBO:0000247" id="M_MAM02543e" name="N-acetylneuraminate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C11H18NO9">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02543e">
+            <rdf:Description rdf:about="#M_MAM02543e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/acnam"/>
@@ -117736,10 +117788,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03481c" sboTerm="SBO:0000247" id="MAM03481c" name="Band Membrane Protein (Universal, Erythrocyte --&gt; 2.1,3,4.1)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="BaH">
+      <species metaid="M_MAM03481c" sboTerm="SBO:0000247" id="M_MAM03481c" name="Band Membrane Protein (Universal, Erythrocyte --&gt; 2.1,3,4.1)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="BaH">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03481c">
+            <rdf:Description rdf:about="#M_MAM03481c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/band"/>
@@ -117751,10 +117803,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03482c" sboTerm="SBO:0000247" id="MAM03482c" name="Band Membrane Protein (Methylated, Universal, Erythrocyte -&gt; 2.1,3,4.1)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="BaCH3">
+      <species metaid="M_MAM03482c" sboTerm="SBO:0000247" id="M_MAM03482c" name="Band Membrane Protein (Methylated, Universal, Erythrocyte -&gt; 2.1,3,4.1)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="BaCH3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03482c">
+            <rdf:Description rdf:about="#M_MAM03482c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/bandmt"/>
@@ -117766,10 +117818,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02525e" sboTerm="SBO:0000247" id="MAM02525e" name="N-acetylgalactosamine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H15NO6">
+      <species metaid="M_MAM02525e" sboTerm="SBO:0000247" id="M_MAM02525e" name="N-acetylgalactosamine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H15NO6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02525e">
+            <rdf:Description rdf:about="#M_MAM02525e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/acgal"/>
@@ -117785,10 +117837,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01609e" sboTerm="SBO:0000247" id="MAM01609e" name="core 4" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C24H40N3O15X">
+      <species metaid="M_MAM01609e" sboTerm="SBO:0000247" id="M_MAM01609e" name="core 4" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C24H40N3O15X">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01609e">
+            <rdf:Description rdf:about="#M_MAM01609e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/core4"/>
@@ -117802,10 +117854,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03585e" sboTerm="SBO:0000247" id="MAM03585e" name="D-Galactosamine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H13NO5">
+      <species metaid="M_MAM03585e" sboTerm="SBO:0000247" id="M_MAM03585e" name="D-Galactosamine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H13NO5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03585e">
+            <rdf:Description rdf:about="#M_MAM03585e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/galam"/>
@@ -117820,10 +117872,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03585c" sboTerm="SBO:0000247" id="MAM03585c" name="D-Galactosamine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H13NO5">
+      <species metaid="M_MAM03585c" sboTerm="SBO:0000247" id="M_MAM03585c" name="D-Galactosamine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H13NO5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03585c">
+            <rdf:Description rdf:about="#M_MAM03585c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/galam"/>
@@ -117838,10 +117890,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03772c" sboTerm="SBO:0000247" id="MAM03772c" name="Menaquinone-10" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C61H88O2">
+      <species metaid="M_MAM03772c" sboTerm="SBO:0000247" id="M_MAM03772c" name="Menaquinone-10" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C61H88O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03772c">
+            <rdf:Description rdf:about="#M_MAM03772c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/mqn10"/>
@@ -117854,10 +117906,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03772e" sboTerm="SBO:0000247" id="MAM03772e" name="Menaquinone-10" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C61H88O2">
+      <species metaid="M_MAM03772e" sboTerm="SBO:0000247" id="M_MAM03772e" name="Menaquinone-10" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C61H88O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03772e">
+            <rdf:Description rdf:about="#M_MAM03772e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/mqn10"/>
@@ -117870,10 +117922,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03773c" sboTerm="SBO:0000247" id="MAM03773c" name="Menaquinone-11" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C66H96O2">
+      <species metaid="M_MAM03773c" sboTerm="SBO:0000247" id="M_MAM03773c" name="Menaquinone-11" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C66H96O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03773c">
+            <rdf:Description rdf:about="#M_MAM03773c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/mqn11"/>
@@ -117886,10 +117938,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03773e" sboTerm="SBO:0000247" id="MAM03773e" name="Menaquinone-11" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C66H96O2">
+      <species metaid="M_MAM03773e" sboTerm="SBO:0000247" id="M_MAM03773e" name="Menaquinone-11" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C66H96O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03773e">
+            <rdf:Description rdf:about="#M_MAM03773e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/mqn11"/>
@@ -117902,10 +117954,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03774c" sboTerm="SBO:0000247" id="MAM03774c" name="Menaquinone-7" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C46H64O2">
+      <species metaid="M_MAM03774c" sboTerm="SBO:0000247" id="M_MAM03774c" name="Menaquinone-7" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C46H64O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03774c">
+            <rdf:Description rdf:about="#M_MAM03774c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/mqn7"/>
@@ -117919,10 +117971,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03774e" sboTerm="SBO:0000247" id="MAM03774e" name="Menaquinone-7" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C46H64O2">
+      <species metaid="M_MAM03774e" sboTerm="SBO:0000247" id="M_MAM03774e" name="Menaquinone-7" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C46H64O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03774e">
+            <rdf:Description rdf:about="#M_MAM03774e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/mqn7"/>
@@ -117936,10 +117988,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03776c" sboTerm="SBO:0000247" id="MAM03776c" name="Menaquinone-9" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C56H80O2">
+      <species metaid="M_MAM03776c" sboTerm="SBO:0000247" id="M_MAM03776c" name="Menaquinone-9" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C56H80O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03776c">
+            <rdf:Description rdf:about="#M_MAM03776c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/mqn9"/>
@@ -117952,10 +118004,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03776e" sboTerm="SBO:0000247" id="MAM03776e" name="Menaquinone-9" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C56H80O2">
+      <species metaid="M_MAM03776e" sboTerm="SBO:0000247" id="M_MAM03776e" name="Menaquinone-9" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C56H80O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03776e">
+            <rdf:Description rdf:about="#M_MAM03776e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/mqn9"/>
@@ -117968,10 +118020,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01651e" sboTerm="SBO:0000247" id="MAM01651e" name="de-Fuc form of PA6 (wo peptide linkage)" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C84H136N6O62">
+      <species metaid="M_MAM01651e" sboTerm="SBO:0000247" id="M_MAM01651e" name="de-Fuc form of PA6 (wo peptide linkage)" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C84H136N6O62">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01651e">
+            <rdf:Description rdf:about="#M_MAM01651e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/s2l2n2m2m"/>
@@ -117983,10 +118035,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01801e" sboTerm="SBO:0000247" id="MAM01801e" name="F1alpha" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C22H37N2O15X">
+      <species metaid="M_MAM01801e" sboTerm="SBO:0000247" id="M_MAM01801e" name="F1alpha" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C22H37N2O15X">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01801e">
+            <rdf:Description rdf:about="#M_MAM01801e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/f1a"/>
@@ -117998,10 +118050,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02393e" sboTerm="SBO:0000247" id="MAM02393e" name="lipoamide" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H15NOS2">
+      <species metaid="M_MAM02393e" sboTerm="SBO:0000247" id="M_MAM02393e" name="lipoamide" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H15NOS2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02393e">
+            <rdf:Description rdf:about="#M_MAM02393e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/lpam"/>
@@ -118018,10 +118070,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02393c" sboTerm="SBO:0000247" id="MAM02393c" name="lipoamide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H15NOS2">
+      <species metaid="M_MAM02393c" sboTerm="SBO:0000247" id="M_MAM02393c" name="lipoamide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H15NOS2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02393c">
+            <rdf:Description rdf:about="#M_MAM02393c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/lpam"/>
@@ -118038,10 +118090,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02654e" sboTerm="SBO:0000247" id="MAM02654e" name="O-methylhippurate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H10NO3">
+      <species metaid="M_MAM02654e" sboTerm="SBO:0000247" id="M_MAM02654e" name="O-methylhippurate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H10NO3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02654e">
+            <rdf:Description rdf:about="#M_MAM02654e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM35291"/>
@@ -118053,10 +118105,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03775c" sboTerm="SBO:0000247" id="MAM03775c" name="Menaquinone-8" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C51H72O2">
+      <species metaid="M_MAM03775c" sboTerm="SBO:0000247" id="M_MAM03775c" name="Menaquinone-8" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C51H72O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03775c">
+            <rdf:Description rdf:about="#M_MAM03775c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/mqn8"/>
@@ -118070,10 +118122,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01991e" sboTerm="SBO:0000247" id="MAM01991e" name="glycogenin G4G4" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C1827H2805N455O568S14">
+      <species metaid="M_MAM01991e" sboTerm="SBO:0000247" id="M_MAM01991e" name="glycogenin G4G4" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C1827H2805N455O568S14">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01991e">
+            <rdf:Description rdf:about="#M_MAM01991e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dxtrn"/>
@@ -118085,10 +118137,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00758e" sboTerm="SBO:0000247" id="MAM00758e" name="3alpha,7alpha-dihydroxy-5beta-cholestanate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C27H45O4">
+      <species metaid="M_MAM00758e" sboTerm="SBO:0000247" id="M_MAM00758e" name="3alpha,7alpha-dihydroxy-5beta-cholestanate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C27H45O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00758e">
+            <rdf:Description rdf:about="#M_MAM00758e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dhcholestanate"/>
@@ -118106,10 +118158,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00752e" sboTerm="SBO:0000247" id="MAM00752e" name="3alpha,7alpha,12alpha-trihydroxy-5beta-cholestanate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C27H45O5">
+      <species metaid="M_MAM00752e" sboTerm="SBO:0000247" id="M_MAM00752e" name="3alpha,7alpha,12alpha-trihydroxy-5beta-cholestanate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C27H45O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00752e">
+            <rdf:Description rdf:about="#M_MAM00752e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/thcholstoic"/>
@@ -118127,10 +118179,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01093e" sboTerm="SBO:0000247" id="MAM01093e" name="5beta-cholestane-3alpha,7alpha,26-triol" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H48O3">
+      <species metaid="M_MAM01093e" sboTerm="SBO:0000247" id="M_MAM01093e" name="5beta-cholestane-3alpha,7alpha,26-triol" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H48O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01093e">
+            <rdf:Description rdf:about="#M_MAM01093e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/xol7ah3"/>
@@ -118149,10 +118201,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01182e" sboTerm="SBO:0000247" id="MAM01182e" name="7alpha-hydroxycholest-4-en-3-one" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H44O2">
+      <species metaid="M_MAM01182e" sboTerm="SBO:0000247" id="M_MAM01182e" name="7alpha-hydroxycholest-4-en-3-one" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H44O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01182e">
+            <rdf:Description rdf:about="#M_MAM01182e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/xol7aone"/>
@@ -118171,10 +118223,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01178e" sboTerm="SBO:0000247" id="MAM01178e" name="7alpha,12alpha-dihydroxycholest-4-en-3-one" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H44O3">
+      <species metaid="M_MAM01178e" sboTerm="SBO:0000247" id="M_MAM01178e" name="7alpha,12alpha-dihydroxycholest-4-en-3-one" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H44O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01178e">
+            <rdf:Description rdf:about="#M_MAM01178e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/xoldiolone"/>
@@ -118192,10 +118244,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03313e" sboTerm="SBO:0000247" id="MAM03313e" name="7-Ketolithocholate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H37O4">
+      <species metaid="M_MAM03313e" sboTerm="SBO:0000247" id="M_MAM03313e" name="7-Ketolithocholate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H37O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03313e">
+            <rdf:Description rdf:about="#M_MAM03313e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/7klitchol"/>
@@ -118206,10 +118258,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00671e" sboTerm="SBO:0000247" id="MAM00671e" name="2-oxobutyrate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C4H5O3">
+      <species metaid="M_MAM00671e" sboTerm="SBO:0000247" id="M_MAM00671e" name="2-oxobutyrate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C4H5O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00671e">
+            <rdf:Description rdf:about="#M_MAM00671e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/2obut"/>
@@ -118226,10 +118278,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03614e" sboTerm="SBO:0000247" id="MAM03614e" name="Glutarate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C5H6O4">
+      <species metaid="M_MAM03614e" sboTerm="SBO:0000247" id="M_MAM03614e" name="Glutarate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C5H6O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03614e">
+            <rdf:Description rdf:about="#M_MAM03614e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/glutar"/>
@@ -118244,10 +118296,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01683e" sboTerm="SBO:0000247" id="MAM01683e" name="D-gluconic acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H11O7">
+      <species metaid="M_MAM01683e" sboTerm="SBO:0000247" id="M_MAM01683e" name="D-gluconic acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H11O7">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01683e">
+            <rdf:Description rdf:about="#M_MAM01683e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:33198"/>
@@ -118262,10 +118314,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02358c" sboTerm="SBO:0000247" id="MAM02358c" name="L-erythro-4-hydroxyglutamate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C5H8NO5">
+      <species metaid="M_MAM02358c" sboTerm="SBO:0000247" id="M_MAM02358c" name="L-erythro-4-hydroxyglutamate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C5H8NO5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02358c">
+            <rdf:Description rdf:about="#M_MAM02358c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/e4hglu"/>
@@ -118279,10 +118331,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00989c" sboTerm="SBO:0000247" id="MAM00989c" name="4-hydroxy-2-oxoglutarate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C5H4O6">
+      <species metaid="M_MAM00989c" sboTerm="SBO:0000247" id="M_MAM00989c" name="4-hydroxy-2-oxoglutarate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C5H4O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00989c">
+            <rdf:Description rdf:about="#M_MAM00989c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/4h2oglt"/>
@@ -118298,10 +118350,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03626e" sboTerm="SBO:0000247" id="MAM03626e" name="Glycylleucine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H16N2O3">
+      <species metaid="M_MAM03626e" sboTerm="SBO:0000247" id="M_MAM03626e" name="Glycylleucine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H16N2O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03626e">
+            <rdf:Description rdf:about="#M_MAM03626e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/glyleu"/>
@@ -118318,10 +118370,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03590c" sboTerm="SBO:0000247" id="MAM03590c" name="2-Trans,6-Trans,10-Trans-Geranylgeranyl Diphosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C20H33O7P2">
+      <species metaid="M_MAM03590c" sboTerm="SBO:0000247" id="M_MAM03590c" name="2-Trans,6-Trans,10-Trans-Geranylgeranyl Diphosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C20H33O7P2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03590c">
+            <rdf:Description rdf:about="#M_MAM03590c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ggdp"/>
@@ -118334,10 +118386,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01681e" sboTerm="SBO:0000247" id="MAM01681e" name="D-glucarate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H8O8">
+      <species metaid="M_MAM01681e" sboTerm="SBO:0000247" id="M_MAM01681e" name="D-glucarate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H8O8">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01681e">
+            <rdf:Description rdf:about="#M_MAM01681e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/glcr"/>
@@ -118353,10 +118405,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03193c" sboTerm="SBO:0000247" id="MAM03193c" name="(Z)-But-2-Ene-1,2,3-Tricarboxylate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C7H5O6">
+      <species metaid="M_MAM03193c" sboTerm="SBO:0000247" id="M_MAM03193c" name="(Z)-But-2-Ene-1,2,3-Tricarboxylate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C7H5O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03193c">
+            <rdf:Description rdf:about="#M_MAM03193c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/2mcacn"/>
@@ -118369,10 +118421,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03771c" sboTerm="SBO:0000247" id="MAM03771c" name="(2S,3R)-3-Hydroxybutane-1,2,3-Tricarboxylate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C7H7O7">
+      <species metaid="M_MAM03771c" sboTerm="SBO:0000247" id="M_MAM03771c" name="(2S,3R)-3-Hydroxybutane-1,2,3-Tricarboxylate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C7H7O7">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03771c">
+            <rdf:Description rdf:about="#M_MAM03771c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/micit"/>
@@ -118385,10 +118437,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00995e" sboTerm="SBO:0000247" id="MAM00995e" name="4-hydroxybenzoate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C7H5O3">
+      <species metaid="M_MAM00995e" sboTerm="SBO:0000247" id="M_MAM00995e" name="4-hydroxybenzoate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C7H5O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00995e">
+            <rdf:Description rdf:about="#M_MAM00995e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/4hbz"/>
@@ -118404,10 +118456,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00729e" sboTerm="SBO:0000247" id="MAM00729e" name="3,4-dihydroxyphenylacetate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C8H7O4">
+      <species metaid="M_MAM00729e" sboTerm="SBO:0000247" id="M_MAM00729e" name="3,4-dihydroxyphenylacetate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C8H7O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00729e">
+            <rdf:Description rdf:about="#M_MAM00729e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/34dhpha"/>
@@ -118423,10 +118475,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03775e" sboTerm="SBO:0000247" id="MAM03775e" name="Menaquinone-8" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C51H72O2">
+      <species metaid="M_MAM03775e" sboTerm="SBO:0000247" id="M_MAM03775e" name="Menaquinone-8" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C51H72O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03775e">
+            <rdf:Description rdf:about="#M_MAM03775e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/mqn8"/>
@@ -118440,10 +118492,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03510e" sboTerm="SBO:0000247" id="MAM03510e" name="Methanethiol" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="CH4S">
+      <species metaid="M_MAM03510e" sboTerm="SBO:0000247" id="M_MAM03510e" name="Methanethiol" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="CH4S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03510e">
+            <rdf:Description rdf:about="#M_MAM03510e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ch4s"/>
@@ -118457,10 +118509,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02725e" sboTerm="SBO:0000247" id="MAM02725e" name="phenylpyruvate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C9H7O3">
+      <species metaid="M_MAM02725e" sboTerm="SBO:0000247" id="M_MAM02725e" name="phenylpyruvate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C9H7O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02725e">
+            <rdf:Description rdf:about="#M_MAM02725e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/phpyr"/>
@@ -118477,10 +118529,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03099e" sboTerm="SBO:0000247" id="MAM03099e" name="tyramine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C8H12NO">
+      <species metaid="M_MAM03099e" sboTerm="SBO:0000247" id="M_MAM03099e" name="tyramine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C8H12NO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03099e">
+            <rdf:Description rdf:about="#M_MAM03099e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/tym"/>
@@ -118496,10 +118548,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00654e" sboTerm="SBO:0000247" id="MAM00654e" name="2-hydroxyphenylacetate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C8H7O3">
+      <species metaid="M_MAM00654e" sboTerm="SBO:0000247" id="M_MAM00654e" name="2-hydroxyphenylacetate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C8H7O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00654e">
+            <rdf:Description rdf:about="#M_MAM00654e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/2hyoxplac"/>
@@ -118515,10 +118567,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02336e" sboTerm="SBO:0000247" id="MAM02336e" name="lanosterol" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C30H50O">
+      <species metaid="M_MAM02336e" sboTerm="SBO:0000247" id="M_MAM02336e" name="lanosterol" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C30H50O">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02336e">
+            <rdf:Description rdf:about="#M_MAM02336e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/lanost"/>
@@ -118536,10 +118588,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03136e" sboTerm="SBO:0000247" id="MAM03136e" name="vanillylmandelate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C9H9O5">
+      <species metaid="M_MAM03136e" sboTerm="SBO:0000247" id="M_MAM03136e" name="vanillylmandelate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C9H9O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03136e">
+            <rdf:Description rdf:about="#M_MAM03136e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/3mox4hoxm"/>
@@ -118556,10 +118608,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02007e" sboTerm="SBO:0000247" id="MAM02007e" name="glyoxalate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C2H1O3">
+      <species metaid="M_MAM02007e" sboTerm="SBO:0000247" id="M_MAM02007e" name="glyoxalate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C2H1O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02007e">
+            <rdf:Description rdf:about="#M_MAM02007e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/glx"/>
@@ -118575,10 +118627,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00664c" sboTerm="SBO:0000247" id="MAM00664c" name="2-methylbutyrylglycine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C7H12NO3">
+      <species metaid="M_MAM00664c" sboTerm="SBO:0000247" id="M_MAM00664c" name="2-methylbutyrylglycine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C7H12NO3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00664c">
+            <rdf:Description rdf:about="#M_MAM00664c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:240943"/>
@@ -118592,10 +118644,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00664e" sboTerm="SBO:0000247" id="MAM00664e" name="2-methylbutyrylglycine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C7H12NO3">
+      <species metaid="M_MAM00664e" sboTerm="SBO:0000247" id="M_MAM00664e" name="2-methylbutyrylglycine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C7H12NO3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00664e">
+            <rdf:Description rdf:about="#M_MAM00664e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:240943"/>
@@ -118609,10 +118661,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00825c" sboTerm="SBO:0000247" id="MAM00825c" name="3-methylcrotonoylglycine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C7H10NO3">
+      <species metaid="M_MAM00825c" sboTerm="SBO:0000247" id="M_MAM00825c" name="3-methylcrotonoylglycine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C7H10NO3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00825c">
+            <rdf:Description rdf:about="#M_MAM00825c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM166207"/>
@@ -118624,10 +118676,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00825e" sboTerm="SBO:0000247" id="MAM00825e" name="3-methylcrotonoylglycine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C7H10NO3">
+      <species metaid="M_MAM00825e" sboTerm="SBO:0000247" id="M_MAM00825e" name="3-methylcrotonoylglycine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C7H10NO3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00825e">
+            <rdf:Description rdf:about="#M_MAM00825e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM166207"/>
@@ -118639,10 +118691,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02190c" sboTerm="SBO:0000247" id="MAM02190c" name="isovalerylglycine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C7H12NO3">
+      <species metaid="M_MAM02190c" sboTerm="SBO:0000247" id="M_MAM02190c" name="isovalerylglycine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C7H12NO3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02190c">
+            <rdf:Description rdf:about="#M_MAM02190c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/hmdb/HMDB00678"/>
@@ -118655,10 +118707,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02190e" sboTerm="SBO:0000247" id="MAM02190e" name="isovalerylglycine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C7H12NO3">
+      <species metaid="M_MAM02190e" sboTerm="SBO:0000247" id="M_MAM02190e" name="isovalerylglycine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C7H12NO3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02190e">
+            <rdf:Description rdf:about="#M_MAM02190e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/hmdb/HMDB00678"/>
@@ -118671,10 +118723,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03407m" sboTerm="SBO:0000247" id="MAM03407m" name="N-Acetyl-Tyrosine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C11H12NO4">
+      <species metaid="M_MAM03407m" sboTerm="SBO:0000247" id="M_MAM03407m" name="N-Acetyl-Tyrosine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C11H12NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03407m">
+            <rdf:Description rdf:about="#M_MAM03407m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/actyr"/>
@@ -118685,10 +118737,10 @@
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         </annotation>
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-      <species metaid="MAM03407c" sboTerm="SBO:0000247" id="MAM03407c" name="N-Acetyl-Tyrosine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C11H12NO4">
+      <species metaid="M_MAM03407c" sboTerm="SBO:0000247" id="M_MAM03407c" name="N-Acetyl-Tyrosine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C11H12NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03407c">
+            <rdf:Description rdf:about="#M_MAM03407c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/actyr"/>
@@ -118699,10 +118751,10 @@
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         </annotation>
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-      <species metaid="MAM03407e" sboTerm="SBO:0000247" id="MAM03407e" name="N-Acetyl-Tyrosine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C11H12NO4">
+      <species metaid="M_MAM03407e" sboTerm="SBO:0000247" id="M_MAM03407e" name="N-Acetyl-Tyrosine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C11H12NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03407e">
+            <rdf:Description rdf:about="#M_MAM03407e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/actyr"/>
@@ -118713,10 +118765,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM03956c" sboTerm="SBO:0000247" id="MAM03956c" name="Succinyl-Acetoacetate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C8H8O6">
+      <species metaid="M_MAM03956c" sboTerm="SBO:0000247" id="M_MAM03956c" name="Succinyl-Acetoacetate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C8H8O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03956c">
+            <rdf:Description rdf:about="#M_MAM03956c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/sucacetat"/>
@@ -118727,10 +118779,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03957c" sboTerm="SBO:0000247" id="MAM03957c" name="Succinylacetone" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C7H9O4">
+      <species metaid="M_MAM03957c" sboTerm="SBO:0000247" id="M_MAM03957c" name="Succinylacetone" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C7H9O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03957c">
+            <rdf:Description rdf:about="#M_MAM03957c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/sucaceto"/>
@@ -118741,10 +118793,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03957e" sboTerm="SBO:0000247" id="MAM03957e" name="Succinylacetone" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C7H9O4">
+      <species metaid="M_MAM03957e" sboTerm="SBO:0000247" id="M_MAM03957e" name="Succinylacetone" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C7H9O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03957e">
+            <rdf:Description rdf:about="#M_MAM03957e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/sucaceto"/>
@@ -118755,10 +118807,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM04073c" sboTerm="SBO:0000247" id="MAM04073c" name="Vanilpyruvic Acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H9O5">
+      <species metaid="M_MAM04073c" sboTerm="SBO:0000247" id="M_MAM04073c" name="Vanilpyruvic Acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H9O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM04073c">
+            <rdf:Description rdf:about="#M_MAM04073c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/vanilpyr"/>
@@ -118769,10 +118821,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM04072c" sboTerm="SBO:0000247" id="MAM04072c" name="Vanil-Lactate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H11O5">
+      <species metaid="M_MAM04072c" sboTerm="SBO:0000247" id="M_MAM04072c" name="Vanil-Lactate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H11O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM04072c">
+            <rdf:Description rdf:about="#M_MAM04072c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/vanillac"/>
@@ -118783,10 +118835,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00830m" sboTerm="SBO:0000247" id="MAM00830m" name="3-O-methyldopa" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H13NO4">
+      <species metaid="M_MAM00830m" sboTerm="SBO:0000247" id="M_MAM00830m" name="3-O-methyldopa" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H13NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00830m">
+            <rdf:Description rdf:about="#M_MAM00830m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/hmdb/HMDB01434"/>
@@ -118800,10 +118852,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03778m" sboTerm="SBO:0000247" id="MAM03778m" name="N-Acetylvanilalanine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C12H14NO5">
+      <species metaid="M_MAM03778m" sboTerm="SBO:0000247" id="M_MAM03778m" name="N-Acetylvanilalanine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C12H14NO5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03778m">
+            <rdf:Description rdf:about="#M_MAM03778m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/nacvanala"/>
@@ -118814,10 +118866,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03778c" sboTerm="SBO:0000247" id="MAM03778c" name="N-Acetylvanilalanine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C12H14NO5">
+      <species metaid="M_MAM03778c" sboTerm="SBO:0000247" id="M_MAM03778c" name="N-Acetylvanilalanine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C12H14NO5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03778c">
+            <rdf:Description rdf:about="#M_MAM03778c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/nacvanala"/>
@@ -118828,10 +118880,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03778e" sboTerm="SBO:0000247" id="MAM03778e" name="N-Acetylvanilalanine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C12H14NO5">
+      <species metaid="M_MAM03778e" sboTerm="SBO:0000247" id="M_MAM03778e" name="N-Acetylvanilalanine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C12H14NO5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03778e">
+            <rdf:Description rdf:about="#M_MAM03778e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/nacvanala"/>
@@ -118842,10 +118894,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM04072e" sboTerm="SBO:0000247" id="MAM04072e" name="Vanil-Lactate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H11O5">
+      <species metaid="M_MAM04072e" sboTerm="SBO:0000247" id="M_MAM04072e" name="Vanil-Lactate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H11O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM04072e">
+            <rdf:Description rdf:about="#M_MAM04072e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/vanillac"/>
@@ -118856,10 +118908,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03176c" sboTerm="SBO:0000247" id="MAM03176c" name="2-Hydroxy-3-Methyl-Valerate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H11O3">
+      <species metaid="M_MAM03176c" sboTerm="SBO:0000247" id="M_MAM03176c" name="2-Hydroxy-3-Methyl-Valerate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H11O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03176c">
+            <rdf:Description rdf:about="#M_MAM03176c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/2h3mv"/>
@@ -118870,10 +118922,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03176e" sboTerm="SBO:0000247" id="MAM03176e" name="2-Hydroxy-3-Methyl-Valerate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H11O3">
+      <species metaid="M_MAM03176e" sboTerm="SBO:0000247" id="M_MAM03176e" name="2-Hydroxy-3-Methyl-Valerate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H11O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03176e">
+            <rdf:Description rdf:about="#M_MAM03176e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/2h3mv"/>
@@ -118884,10 +118936,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03186c" sboTerm="SBO:0000247" id="MAM03186c" name="2-Hydroxy-Isovalerate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C5H9O3">
+      <species metaid="M_MAM03186c" sboTerm="SBO:0000247" id="M_MAM03186c" name="2-Hydroxy-Isovalerate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C5H9O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03186c">
+            <rdf:Description rdf:about="#M_MAM03186c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/2hiv"/>
@@ -118898,10 +118950,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03186e" sboTerm="SBO:0000247" id="MAM03186e" name="2-Hydroxy-Isovalerate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C5H9O3">
+      <species metaid="M_MAM03186e" sboTerm="SBO:0000247" id="M_MAM03186e" name="2-Hydroxy-Isovalerate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C5H9O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03186e">
+            <rdf:Description rdf:about="#M_MAM03186e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/2hiv"/>
@@ -118912,10 +118964,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM03189m" sboTerm="SBO:0000247" id="MAM03189m" name="2-Methyl-3-Hydroxy-Butyrate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C5H9O3">
+      <species metaid="M_MAM03189m" sboTerm="SBO:0000247" id="M_MAM03189m" name="2-Methyl-3-Hydroxy-Butyrate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C5H9O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03189m">
+            <rdf:Description rdf:about="#M_MAM03189m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/2m3hbu"/>
@@ -118926,10 +118978,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM03189c" sboTerm="SBO:0000247" id="MAM03189c" name="2-Methyl-3-Hydroxy-Butyrate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C5H9O3">
+      <species metaid="M_MAM03189c" sboTerm="SBO:0000247" id="M_MAM03189c" name="2-Methyl-3-Hydroxy-Butyrate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C5H9O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03189c">
+            <rdf:Description rdf:about="#M_MAM03189c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/2m3hbu"/>
@@ -118940,10 +118992,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM03189e" sboTerm="SBO:0000247" id="MAM03189e" name="2-Methyl-3-Hydroxy-Butyrate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C5H9O3">
+      <species metaid="M_MAM03189e" sboTerm="SBO:0000247" id="M_MAM03189e" name="2-Methyl-3-Hydroxy-Butyrate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C5H9O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03189e">
+            <rdf:Description rdf:about="#M_MAM03189e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/2m3hbu"/>
@@ -118954,10 +119006,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03192m" sboTerm="SBO:0000247" id="MAM03192m" name="2-Methyl-3-Oxo-Valeryl Coenzyme A" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C27H40N7O18P3S">
+      <species metaid="M_MAM03192m" sboTerm="SBO:0000247" id="M_MAM03192m" name="2-Methyl-3-Oxo-Valeryl Coenzyme A" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C27H40N7O18P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03192m">
+            <rdf:Description rdf:about="#M_MAM03192m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/2m3ovcoa"/>
@@ -118968,10 +119020,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03191m" sboTerm="SBO:0000247" id="MAM03191m" name="2-Methyl-3-Oxo-Valerate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H9O3">
+      <species metaid="M_MAM03191m" sboTerm="SBO:0000247" id="M_MAM03191m" name="2-Methyl-3-Oxo-Valerate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H9O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03191m">
+            <rdf:Description rdf:about="#M_MAM03191m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/2m3ovac"/>
@@ -118982,10 +119034,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03191c" sboTerm="SBO:0000247" id="MAM03191c" name="2-Methyl-3-Oxo-Valerate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H9O3">
+      <species metaid="M_MAM03191c" sboTerm="SBO:0000247" id="M_MAM03191c" name="2-Methyl-3-Oxo-Valerate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H9O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03191c">
+            <rdf:Description rdf:about="#M_MAM03191c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/2m3ovac"/>
@@ -118996,10 +119048,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03190c" sboTerm="SBO:0000247" id="MAM03190c" name="2-Methyl-3-Hydroxy-Valerate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H11O3">
+      <species metaid="M_MAM03190c" sboTerm="SBO:0000247" id="M_MAM03190c" name="2-Methyl-3-Hydroxy-Valerate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H11O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03190c">
+            <rdf:Description rdf:about="#M_MAM03190c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/2m3hvac"/>
@@ -119010,10 +119062,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM03190e" sboTerm="SBO:0000247" id="MAM03190e" name="2-Methyl-3-Hydroxy-Valerate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H11O3">
+      <species metaid="M_MAM03190e" sboTerm="SBO:0000247" id="M_MAM03190e" name="2-Methyl-3-Hydroxy-Valerate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H11O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03190e">
+            <rdf:Description rdf:about="#M_MAM03190e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/2m3hvac"/>
@@ -119024,10 +119076,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03212c" sboTerm="SBO:0000247" id="MAM03212c" name="3-Hydroxy-3-Methyl-Glutarate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H8O5">
+      <species metaid="M_MAM03212c" sboTerm="SBO:0000247" id="M_MAM03212c" name="3-Hydroxy-3-Methyl-Glutarate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H8O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03212c">
+            <rdf:Description rdf:about="#M_MAM03212c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/3h3mglt"/>
@@ -119038,10 +119090,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03212e" sboTerm="SBO:0000247" id="MAM03212e" name="3-Hydroxy-3-Methyl-Glutarate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H8O5">
+      <species metaid="M_MAM03212e" sboTerm="SBO:0000247" id="M_MAM03212e" name="3-Hydroxy-3-Methyl-Glutarate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H8O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03212e">
+            <rdf:Description rdf:about="#M_MAM03212e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/3h3mglt"/>
@@ -119052,10 +119104,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03245m" sboTerm="SBO:0000247" id="MAM03245m" name="3-Methyl-Glutaconate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H6O4">
+      <species metaid="M_MAM03245m" sboTerm="SBO:0000247" id="M_MAM03245m" name="3-Methyl-Glutaconate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H6O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03245m">
+            <rdf:Description rdf:about="#M_MAM03245m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/3mglutac"/>
@@ -119066,10 +119118,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03245c" sboTerm="SBO:0000247" id="MAM03245c" name="3-Methyl-Glutaconate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H6O4">
+      <species metaid="M_MAM03245c" sboTerm="SBO:0000247" id="M_MAM03245c" name="3-Methyl-Glutaconate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H6O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03245c">
+            <rdf:Description rdf:about="#M_MAM03245c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/3mglutac"/>
@@ -119080,10 +119132,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03245e" sboTerm="SBO:0000247" id="MAM03245e" name="3-Methyl-Glutaconate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H6O4">
+      <species metaid="M_MAM03245e" sboTerm="SBO:0000247" id="M_MAM03245e" name="3-Methyl-Glutaconate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H6O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03245e">
+            <rdf:Description rdf:about="#M_MAM03245e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/3mglutac"/>
@@ -119094,10 +119146,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03246c" sboTerm="SBO:0000247" id="MAM03246c" name="3-Methyl-Glutarate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H8O4">
+      <species metaid="M_MAM03246c" sboTerm="SBO:0000247" id="M_MAM03246c" name="3-Methyl-Glutarate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H8O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03246c">
+            <rdf:Description rdf:about="#M_MAM03246c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/3mglutr"/>
@@ -119108,10 +119160,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03246e" sboTerm="SBO:0000247" id="MAM03246e" name="3-Methyl-Glutarate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H8O4">
+      <species metaid="M_MAM03246e" sboTerm="SBO:0000247" id="M_MAM03246e" name="3-Methyl-Glutarate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H8O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03246e">
+            <rdf:Description rdf:about="#M_MAM03246e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/3mglutr"/>
@@ -119122,10 +119174,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03886m" sboTerm="SBO:0000247" id="MAM03886m" name="Propionyl-Glycine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C5H8NO3">
+      <species metaid="M_MAM03886m" sboTerm="SBO:0000247" id="M_MAM03886m" name="Propionyl-Glycine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C5H8NO3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03886m">
+            <rdf:Description rdf:about="#M_MAM03886m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ppiogly"/>
@@ -119136,10 +119188,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03886c" sboTerm="SBO:0000247" id="MAM03886c" name="Propionyl-Glycine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C5H8NO3">
+      <species metaid="M_MAM03886c" sboTerm="SBO:0000247" id="M_MAM03886c" name="Propionyl-Glycine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C5H8NO3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03886c">
+            <rdf:Description rdf:about="#M_MAM03886c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ppiogly"/>
@@ -119150,10 +119202,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03886e" sboTerm="SBO:0000247" id="MAM03886e" name="Propionyl-Glycine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C5H8NO3">
+      <species metaid="M_MAM03886e" sboTerm="SBO:0000247" id="M_MAM03886e" name="Propionyl-Glycine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C5H8NO3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03886e">
+            <rdf:Description rdf:about="#M_MAM03886e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ppiogly"/>
@@ -119164,10 +119216,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03777c" sboTerm="SBO:0000247" id="MAM03777c" name="Mevalonate-Lactone" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H10O3">
+      <species metaid="M_MAM03777c" sboTerm="SBO:0000247" id="M_MAM03777c" name="Mevalonate-Lactone" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H10O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03777c">
+            <rdf:Description rdf:about="#M_MAM03777c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/mvlac"/>
@@ -119179,10 +119231,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03777e" sboTerm="SBO:0000247" id="MAM03777e" name="Mevalonate-Lactone" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H10O3">
+      <species metaid="M_MAM03777e" sboTerm="SBO:0000247" id="M_MAM03777e" name="Mevalonate-Lactone" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H10O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03777e">
+            <rdf:Description rdf:about="#M_MAM03777e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/mvlac"/>
@@ -119194,10 +119246,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03997m" sboTerm="SBO:0000247" id="MAM03997m" name="Tiglyl Glycine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C7H10NO3">
+      <species metaid="M_MAM03997m" sboTerm="SBO:0000247" id="M_MAM03997m" name="Tiglyl Glycine" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C7H10NO3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03997m">
+            <rdf:Description rdf:about="#M_MAM03997m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/tiggly"/>
@@ -119208,10 +119260,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03997c" sboTerm="SBO:0000247" id="MAM03997c" name="Tiglyl Glycine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C7H10NO3">
+      <species metaid="M_MAM03997c" sboTerm="SBO:0000247" id="M_MAM03997c" name="Tiglyl Glycine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C7H10NO3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03997c">
+            <rdf:Description rdf:about="#M_MAM03997c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/tiggly"/>
@@ -119222,10 +119274,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03997e" sboTerm="SBO:0000247" id="MAM03997e" name="Tiglyl Glycine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C7H10NO3">
+      <species metaid="M_MAM03997e" sboTerm="SBO:0000247" id="M_MAM03997e" name="Tiglyl Glycine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C7H10NO3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03997e">
+            <rdf:Description rdf:about="#M_MAM03997e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/tiggly"/>
@@ -119236,10 +119288,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03964m" sboTerm="SBO:0000247" id="MAM03964m" name="Trans-Delta-2-Glutaryl Coenzyme A" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C26H35N7O19P3S">
+      <species metaid="M_MAM03964m" sboTerm="SBO:0000247" id="M_MAM03964m" name="Trans-Delta-2-Glutaryl Coenzyme A" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C26H35N7O19P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03964m">
+            <rdf:Description rdf:about="#M_MAM03964m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/td2glutrcoa"/>
@@ -119250,10 +119302,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03222m" sboTerm="SBO:0000247" id="MAM03222m" name="3-Hydroxy-Glutaryl Coenzyme A" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C26H37N7O20P3S">
+      <species metaid="M_MAM03222m" sboTerm="SBO:0000247" id="M_MAM03222m" name="3-Hydroxy-Glutaryl Coenzyme A" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C26H37N7O20P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03222m">
+            <rdf:Description rdf:about="#M_MAM03222m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/3hglutcoa"/>
@@ -119264,10 +119316,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03257m" sboTerm="SBO:0000247" id="MAM03257m" name="3-Hydroxy-Glutarate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C5H6O5">
+      <species metaid="M_MAM03257m" sboTerm="SBO:0000247" id="M_MAM03257m" name="3-Hydroxy-Glutarate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C5H6O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03257m">
+            <rdf:Description rdf:about="#M_MAM03257m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/3ohglutac"/>
@@ -119278,10 +119330,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03257c" sboTerm="SBO:0000247" id="MAM03257c" name="3-Hydroxy-Glutarate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C5H6O5">
+      <species metaid="M_MAM03257c" sboTerm="SBO:0000247" id="M_MAM03257c" name="3-Hydroxy-Glutarate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C5H6O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03257c">
+            <rdf:Description rdf:about="#M_MAM03257c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/3ohglutac"/>
@@ -119292,10 +119344,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03257e" sboTerm="SBO:0000247" id="MAM03257e" name="3-Hydroxy-Glutarate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C5H6O5">
+      <species metaid="M_MAM03257e" sboTerm="SBO:0000247" id="M_MAM03257e" name="3-Hydroxy-Glutarate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C5H6O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03257e">
+            <rdf:Description rdf:about="#M_MAM03257e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/3ohglutac"/>
@@ -119306,10 +119358,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03613m" sboTerm="SBO:0000247" id="MAM03613m" name="Glutaconyl Coenzyme A" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C26H35N7O19P3S">
+      <species metaid="M_MAM03613m" sboTerm="SBO:0000247" id="M_MAM03613m" name="Glutaconyl Coenzyme A" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C26H35N7O19P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03613m">
+            <rdf:Description rdf:about="#M_MAM03613m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/glutacoa"/>
@@ -119320,10 +119372,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03615m" sboTerm="SBO:0000247" id="MAM03615m" name="Glutaconate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C5H4O4">
+      <species metaid="M_MAM03615m" sboTerm="SBO:0000247" id="M_MAM03615m" name="Glutaconate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C5H4O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03615m">
+            <rdf:Description rdf:about="#M_MAM03615m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/glutcon"/>
@@ -119334,10 +119386,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03615c" sboTerm="SBO:0000247" id="MAM03615c" name="Glutaconate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C5H4O4">
+      <species metaid="M_MAM03615c" sboTerm="SBO:0000247" id="M_MAM03615c" name="Glutaconate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C5H4O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03615c">
+            <rdf:Description rdf:about="#M_MAM03615c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/glutcon"/>
@@ -119348,10 +119400,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03615e" sboTerm="SBO:0000247" id="MAM03615e" name="Glutaconate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C5H4O4">
+      <species metaid="M_MAM03615e" sboTerm="SBO:0000247" id="M_MAM03615e" name="Glutaconate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C5H4O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03615e">
+            <rdf:Description rdf:about="#M_MAM03615e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/glutcon"/>
@@ -119362,10 +119414,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03227m" sboTerm="SBO:0000247" id="MAM03227m" name="3-Hydroxyisovaleric Acid" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C5H9O3">
+      <species metaid="M_MAM03227m" sboTerm="SBO:0000247" id="M_MAM03227m" name="3-Hydroxyisovaleric Acid" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C5H9O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03227m">
+            <rdf:Description rdf:about="#M_MAM03227m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/3hivac"/>
@@ -119376,10 +119428,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03227c" sboTerm="SBO:0000247" id="MAM03227c" name="3-Hydroxyisovaleric Acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C5H9O3">
+      <species metaid="M_MAM03227c" sboTerm="SBO:0000247" id="M_MAM03227c" name="3-Hydroxyisovaleric Acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C5H9O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03227c">
+            <rdf:Description rdf:about="#M_MAM03227c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/3hivac"/>
@@ -119390,10 +119442,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03227e" sboTerm="SBO:0000247" id="MAM03227e" name="3-Hydroxyisovaleric Acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C5H9O3">
+      <species metaid="M_MAM03227e" sboTerm="SBO:0000247" id="M_MAM03227e" name="3-Hydroxyisovaleric Acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C5H9O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03227e">
+            <rdf:Description rdf:about="#M_MAM03227e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/3hivac"/>
@@ -119404,10 +119456,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM03213x" sboTerm="SBO:0000247" id="MAM03213x" name="3-Hydroxy-Adipoyl Coenzyme A" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C27H39N7O20P3S">
+      <species metaid="M_MAM03213x" sboTerm="SBO:0000247" id="M_MAM03213x" name="3-Hydroxy-Adipoyl Coenzyme A" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C27H39N7O20P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03213x">
+            <rdf:Description rdf:about="#M_MAM03213x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/3hadicoa"/>
@@ -119418,10 +119470,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM03214x" sboTerm="SBO:0000247" id="MAM03214x" name="3-Hydroxy-Adipate" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H8O5">
+      <species metaid="M_MAM03214x" sboTerm="SBO:0000247" id="M_MAM03214x" name="3-Hydroxy-Adipate" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H8O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03214x">
+            <rdf:Description rdf:about="#M_MAM03214x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/3hadpac"/>
@@ -119432,10 +119484,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03214c" sboTerm="SBO:0000247" id="MAM03214c" name="3-Hydroxy-Adipate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H8O5">
+      <species metaid="M_MAM03214c" sboTerm="SBO:0000247" id="M_MAM03214c" name="3-Hydroxy-Adipate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H8O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03214c">
+            <rdf:Description rdf:about="#M_MAM03214c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/3hadpac"/>
@@ -119446,10 +119498,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03214e" sboTerm="SBO:0000247" id="MAM03214e" name="3-Hydroxy-Adipate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H8O5">
+      <species metaid="M_MAM03214e" sboTerm="SBO:0000247" id="M_MAM03214e" name="3-Hydroxy-Adipate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H8O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03214e">
+            <rdf:Description rdf:about="#M_MAM03214e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/3hadpac"/>
@@ -119460,10 +119512,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03259x" sboTerm="SBO:0000247" id="MAM03259x" name="3-Hydroxy-Sebacoyl Coenzyme A" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C31H47N7O20P3S">
+      <species metaid="M_MAM03259x" sboTerm="SBO:0000247" id="M_MAM03259x" name="3-Hydroxy-Sebacoyl Coenzyme A" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C31H47N7O20P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03259x">
+            <rdf:Description rdf:about="#M_MAM03259x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/3ohsebcoa"/>
@@ -119474,10 +119526,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03258x" sboTerm="SBO:0000247" id="MAM03258x" name="3-Hydroxy-Sebacic Acid" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C10H16O5">
+      <species metaid="M_MAM03258x" sboTerm="SBO:0000247" id="M_MAM03258x" name="3-Hydroxy-Sebacic Acid" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C10H16O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03258x">
+            <rdf:Description rdf:about="#M_MAM03258x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/3ohsebac"/>
@@ -119488,10 +119540,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03258c" sboTerm="SBO:0000247" id="MAM03258c" name="3-Hydroxy-Sebacic Acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C10H16O5">
+      <species metaid="M_MAM03258c" sboTerm="SBO:0000247" id="M_MAM03258c" name="3-Hydroxy-Sebacic Acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C10H16O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03258c">
+            <rdf:Description rdf:about="#M_MAM03258c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/3ohsebac"/>
@@ -119502,10 +119554,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03258e" sboTerm="SBO:0000247" id="MAM03258e" name="3-Hydroxy-Sebacic Acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C10H16O5">
+      <species metaid="M_MAM03258e" sboTerm="SBO:0000247" id="M_MAM03258e" name="3-Hydroxy-Sebacic Acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C10H16O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03258e">
+            <rdf:Description rdf:about="#M_MAM03258e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/3ohsebac"/>
@@ -119516,10 +119568,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03261x" sboTerm="SBO:0000247" id="MAM03261x" name="3-Hydoxy-Suberyl Coenzyme A" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C29H43N7O20P3S">
+      <species metaid="M_MAM03261x" sboTerm="SBO:0000247" id="M_MAM03261x" name="3-Hydoxy-Suberyl Coenzyme A" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C29H43N7O20P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03261x">
+            <rdf:Description rdf:about="#M_MAM03261x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/3ohsubcoa"/>
@@ -119530,10 +119582,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03260x" sboTerm="SBO:0000247" id="MAM03260x" name="3-Hydoxy-Suberic Acid" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C8H12O5">
+      <species metaid="M_MAM03260x" sboTerm="SBO:0000247" id="M_MAM03260x" name="3-Hydoxy-Suberic Acid" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C8H12O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03260x">
+            <rdf:Description rdf:about="#M_MAM03260x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/3ohsubac"/>
@@ -119544,10 +119596,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03260c" sboTerm="SBO:0000247" id="MAM03260c" name="3-Hydoxy-Suberic Acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C8H12O5">
+      <species metaid="M_MAM03260c" sboTerm="SBO:0000247" id="M_MAM03260c" name="3-Hydoxy-Suberic Acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C8H12O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03260c">
+            <rdf:Description rdf:about="#M_MAM03260c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/3ohsubac"/>
@@ -119558,10 +119610,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03260e" sboTerm="SBO:0000247" id="MAM03260e" name="3-Hydoxy-Suberic Acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C8H12O5">
+      <species metaid="M_MAM03260e" sboTerm="SBO:0000247" id="M_MAM03260e" name="3-Hydoxy-Suberic Acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C8H12O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03260e">
+            <rdf:Description rdf:about="#M_MAM03260e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/3ohsubac"/>
@@ -119572,10 +119624,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03287c" sboTerm="SBO:0000247" id="MAM03287c" name="5-Hydroxyhexanoic Acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H11O3">
+      <species metaid="M_MAM03287c" sboTerm="SBO:0000247" id="M_MAM03287c" name="5-Hydroxyhexanoic Acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H11O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03287c">
+            <rdf:Description rdf:about="#M_MAM03287c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/5ohhexa"/>
@@ -119586,10 +119638,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03287e" sboTerm="SBO:0000247" id="MAM03287e" name="5-Hydroxyhexanoic Acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H11O3">
+      <species metaid="M_MAM03287e" sboTerm="SBO:0000247" id="M_MAM03287e" name="5-Hydroxyhexanoic Acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H11O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03287e">
+            <rdf:Description rdf:about="#M_MAM03287e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/5ohhexa"/>
@@ -119600,10 +119652,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03314c" sboTerm="SBO:0000247" id="MAM03314c" name="7-Hydroxy-Octanoate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C8H15O3">
+      <species metaid="M_MAM03314c" sboTerm="SBO:0000247" id="M_MAM03314c" name="7-Hydroxy-Octanoate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C8H15O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03314c">
+            <rdf:Description rdf:about="#M_MAM03314c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/7ohocata"/>
@@ -119614,10 +119666,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03314e" sboTerm="SBO:0000247" id="MAM03314e" name="7-Hydroxy-Octanoate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C8H15O3">
+      <species metaid="M_MAM03314e" sboTerm="SBO:0000247" id="M_MAM03314e" name="7-Hydroxy-Octanoate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C8H15O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03314e">
+            <rdf:Description rdf:about="#M_MAM03314e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/7ohocata"/>
@@ -119628,10 +119680,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03576c" sboTerm="SBO:0000247" id="MAM03576c" name="Ethylmalonyl Coenzyme A" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C26H37N7O19P3S">
+      <species metaid="M_MAM03576c" sboTerm="SBO:0000247" id="M_MAM03576c" name="Ethylmalonyl Coenzyme A" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C26H37N7O19P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03576c">
+            <rdf:Description rdf:about="#M_MAM03576c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ethmalcoa"/>
@@ -119642,10 +119694,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03575c" sboTerm="SBO:0000247" id="MAM03575c" name="Ethylmalonic Acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C5H6O4">
+      <species metaid="M_MAM03575c" sboTerm="SBO:0000247" id="M_MAM03575c" name="Ethylmalonic Acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C5H6O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03575c">
+            <rdf:Description rdf:about="#M_MAM03575c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ethmalac"/>
@@ -119656,10 +119708,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03575e" sboTerm="SBO:0000247" id="MAM03575e" name="Ethylmalonic Acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C5H6O4">
+      <species metaid="M_MAM03575e" sboTerm="SBO:0000247" id="M_MAM03575e" name="Ethylmalonic Acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C5H6O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03575e">
+            <rdf:Description rdf:about="#M_MAM03575e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ethmalac"/>
@@ -119670,10 +119722,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03660c" sboTerm="SBO:0000247" id="MAM03660c" name="Hexanoyl-Glycine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C8H14NO3">
+      <species metaid="M_MAM03660c" sboTerm="SBO:0000247" id="M_MAM03660c" name="Hexanoyl-Glycine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C8H14NO3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03660c">
+            <rdf:Description rdf:about="#M_MAM03660c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hexgly"/>
@@ -119684,10 +119736,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03660e" sboTerm="SBO:0000247" id="MAM03660e" name="Hexanoyl-Glycine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C8H14NO3">
+      <species metaid="M_MAM03660e" sboTerm="SBO:0000247" id="M_MAM03660e" name="Hexanoyl-Glycine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C8H14NO3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03660e">
+            <rdf:Description rdf:about="#M_MAM03660e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hexgly"/>
@@ -119698,10 +119750,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03766c" sboTerm="SBO:0000247" id="MAM03766c" name="Methyl-Succinyl Coenzyme A" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C26H37N7O19P3S">
+      <species metaid="M_MAM03766c" sboTerm="SBO:0000247" id="M_MAM03766c" name="Methyl-Succinyl Coenzyme A" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C26H37N7O19P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03766c">
+            <rdf:Description rdf:about="#M_MAM03766c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/methsuccoa"/>
@@ -119712,10 +119764,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03765c" sboTerm="SBO:0000247" id="MAM03765c" name="Methyl-Succinate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C5H6O4">
+      <species metaid="M_MAM03765c" sboTerm="SBO:0000247" id="M_MAM03765c" name="Methyl-Succinate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C5H6O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03765c">
+            <rdf:Description rdf:about="#M_MAM03765c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/methsucc"/>
@@ -119726,10 +119778,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03765e" sboTerm="SBO:0000247" id="MAM03765e" name="Methyl-Succinate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C5H6O4">
+      <species metaid="M_MAM03765e" sboTerm="SBO:0000247" id="M_MAM03765e" name="Methyl-Succinate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C5H6O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03765e">
+            <rdf:Description rdf:about="#M_MAM03765e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/methsucc"/>
@@ -119740,10 +119792,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03955c" sboTerm="SBO:0000247" id="MAM03955c" name="Suberyl-Glycine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C10H15NO5">
+      <species metaid="M_MAM03955c" sboTerm="SBO:0000247" id="M_MAM03955c" name="Suberyl-Glycine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C10H15NO5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03955c">
+            <rdf:Description rdf:about="#M_MAM03955c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/subgly"/>
@@ -119754,10 +119806,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03955e" sboTerm="SBO:0000247" id="MAM03955e" name="Suberyl-Glycine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C10H15NO5">
+      <species metaid="M_MAM03955e" sboTerm="SBO:0000247" id="M_MAM03955e" name="Suberyl-Glycine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C10H15NO5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03955e">
+            <rdf:Description rdf:about="#M_MAM03955e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/subgly"/>
@@ -119768,10 +119820,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03277m" sboTerm="SBO:0000247" id="MAM03277m" name="4-Hydroxy-Butyrate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C4H7O3">
+      <species metaid="M_MAM03277m" sboTerm="SBO:0000247" id="M_MAM03277m" name="4-Hydroxy-Butyrate" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C4H7O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03277m">
+            <rdf:Description rdf:about="#M_MAM03277m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/4ohbut"/>
@@ -119782,10 +119834,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03277c" sboTerm="SBO:0000247" id="MAM03277c" name="4-Hydroxy-Butyrate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C4H7O3">
+      <species metaid="M_MAM03277c" sboTerm="SBO:0000247" id="M_MAM03277c" name="4-Hydroxy-Butyrate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C4H7O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03277c">
+            <rdf:Description rdf:about="#M_MAM03277c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/4ohbut"/>
@@ -119796,10 +119848,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03277e" sboTerm="SBO:0000247" id="MAM03277e" name="4-Hydroxy-Butyrate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C4H7O3">
+      <species metaid="M_MAM03277e" sboTerm="SBO:0000247" id="M_MAM03277e" name="4-Hydroxy-Butyrate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C4H7O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03277e">
+            <rdf:Description rdf:about="#M_MAM03277e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/4ohbut"/>
@@ -119810,10 +119862,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03804c" sboTerm="SBO:0000247" id="MAM03804c" name="1-Stearoylglycerophosphoinositol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C27H52O12P">
+      <species metaid="M_MAM03804c" sboTerm="SBO:0000247" id="M_MAM03804c" name="1-Stearoylglycerophosphoinositol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C27H52O12P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03804c">
+            <rdf:Description rdf:about="#M_MAM03804c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/pailste_hs"/>
@@ -119823,10 +119875,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03861c" sboTerm="SBO:0000247" id="MAM03861c" name="1-Stearoylglycerophosphoethanolamine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H48NO7P">
+      <species metaid="M_MAM03861c" sboTerm="SBO:0000247" id="M_MAM03861c" name="1-Stearoylglycerophosphoethanolamine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H48NO7P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03861c">
+            <rdf:Description rdf:about="#M_MAM03861c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/peste_hs"/>
@@ -119838,10 +119890,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03187e" sboTerm="SBO:0000247" id="MAM03187e" name="2-Hydroxy-Isocaproate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H11O3">
+      <species metaid="M_MAM03187e" sboTerm="SBO:0000247" id="M_MAM03187e" name="2-Hydroxy-Isocaproate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H11O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03187e">
+            <rdf:Description rdf:about="#M_MAM03187e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/2hxic__L"/>
@@ -119852,10 +119904,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03187c" sboTerm="SBO:0000247" id="MAM03187c" name="2-Hydroxy-Isocaproate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H11O3">
+      <species metaid="M_MAM03187c" sboTerm="SBO:0000247" id="M_MAM03187c" name="2-Hydroxy-Isocaproate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H11O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03187c">
+            <rdf:Description rdf:about="#M_MAM03187c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/2hxic__L"/>
@@ -119866,10 +119918,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM03188c" sboTerm="SBO:0000247" id="MAM03188c" name="2-Hydroxy-Glutarate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C5H6O5">
+      <species metaid="M_MAM03188c" sboTerm="SBO:0000247" id="M_MAM03188c" name="2-Hydroxy-Glutarate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C5H6O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03188c">
+            <rdf:Description rdf:about="#M_MAM03188c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/2hydog"/>
@@ -119880,10 +119932,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM03188e" sboTerm="SBO:0000247" id="MAM03188e" name="2-Hydroxy-Glutarate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C5H6O5">
+      <species metaid="M_MAM03188e" sboTerm="SBO:0000247" id="M_MAM03188e" name="2-Hydroxy-Glutarate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C5H6O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03188e">
+            <rdf:Description rdf:about="#M_MAM03188e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/2hydog"/>
@@ -119894,10 +119946,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03614c" sboTerm="SBO:0000247" id="MAM03614c" name="Glutarate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C5H6O4">
+      <species metaid="M_MAM03614c" sboTerm="SBO:0000247" id="M_MAM03614c" name="Glutarate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C5H6O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03614c">
+            <rdf:Description rdf:about="#M_MAM03614c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/glutar"/>
@@ -119912,10 +119964,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM03981m" sboTerm="SBO:0000247" id="MAM03981m" name="7Z,10Z-Hexadecadienoic Acid" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C16H27O2">
+      <species metaid="M_MAM03981m" sboTerm="SBO:0000247" id="M_MAM03981m" name="7Z,10Z-Hexadecadienoic Acid" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C16H27O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03981m">
+            <rdf:Description rdf:about="#M_MAM03981m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/thexdd"/>
@@ -119926,10 +119978,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM03981c" sboTerm="SBO:0000247" id="MAM03981c" name="7Z,10Z-Hexadecadienoic Acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C16H27O2">
+      <species metaid="M_MAM03981c" sboTerm="SBO:0000247" id="M_MAM03981c" name="7Z,10Z-Hexadecadienoic Acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C16H27O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03981c">
+            <rdf:Description rdf:about="#M_MAM03981c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/thexdd"/>
@@ -119940,10 +119992,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03981e" sboTerm="SBO:0000247" id="MAM03981e" name="7Z,10Z-Hexadecadienoic Acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C16H27O2">
+      <species metaid="M_MAM03981e" sboTerm="SBO:0000247" id="M_MAM03981e" name="7Z,10Z-Hexadecadienoic Acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C16H27O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03981e">
+            <rdf:Description rdf:about="#M_MAM03981e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/thexdd"/>
@@ -119954,10 +120006,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM03657m" sboTerm="SBO:0000247" id="MAM03657m" name="(Z,Z,Z)-7,10,13-Hexadecatrienoic Acid" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C16H25O2">
+      <species metaid="M_MAM03657m" sboTerm="SBO:0000247" id="M_MAM03657m" name="(Z,Z,Z)-7,10,13-Hexadecatrienoic Acid" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C16H25O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03657m">
+            <rdf:Description rdf:about="#M_MAM03657m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hexdtr"/>
@@ -119968,10 +120020,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03657c" sboTerm="SBO:0000247" id="MAM03657c" name="(Z,Z,Z)-7,10,13-Hexadecatrienoic Acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C16H25O2">
+      <species metaid="M_MAM03657c" sboTerm="SBO:0000247" id="M_MAM03657c" name="(Z,Z,Z)-7,10,13-Hexadecatrienoic Acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C16H25O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03657c">
+            <rdf:Description rdf:about="#M_MAM03657c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hexdtr"/>
@@ -119982,10 +120034,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03657e" sboTerm="SBO:0000247" id="MAM03657e" name="(Z,Z,Z)-7,10,13-Hexadecatrienoic Acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C16H25O2">
+      <species metaid="M_MAM03657e" sboTerm="SBO:0000247" id="M_MAM03657e" name="(Z,Z,Z)-7,10,13-Hexadecatrienoic Acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C16H25O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03657e">
+            <rdf:Description rdf:about="#M_MAM03657e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hexdtr"/>
@@ -119996,10 +120048,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03683m" sboTerm="SBO:0000247" id="MAM03683m" name="Trans-Delta-2-Heptadecanoyl Coenzyme A" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C38H62N7O17P3S">
+      <species metaid="M_MAM03683m" sboTerm="SBO:0000247" id="M_MAM03683m" name="Trans-Delta-2-Heptadecanoyl Coenzyme A" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C38H62N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03683m">
+            <rdf:Description rdf:about="#M_MAM03683m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hpdececoa"/>
@@ -120010,10 +120062,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03682m" sboTerm="SBO:0000247" id="MAM03682m" name="Trans-Delta-2-Heptadecanoic Acid" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C17H31O2">
+      <species metaid="M_MAM03682m" sboTerm="SBO:0000247" id="M_MAM03682m" name="Trans-Delta-2-Heptadecanoic Acid" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C17H31O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03682m">
+            <rdf:Description rdf:about="#M_MAM03682m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hpdece"/>
@@ -120024,10 +120076,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03682c" sboTerm="SBO:0000247" id="MAM03682c" name="Trans-Delta-2-Heptadecanoic Acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C17H31O2">
+      <species metaid="M_MAM03682c" sboTerm="SBO:0000247" id="M_MAM03682c" name="Trans-Delta-2-Heptadecanoic Acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C17H31O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03682c">
+            <rdf:Description rdf:about="#M_MAM03682c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hpdece"/>
@@ -120038,10 +120090,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03682e" sboTerm="SBO:0000247" id="MAM03682e" name="Trans-Delta-2-Heptadecanoic Acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C17H31O2">
+      <species metaid="M_MAM03682e" sboTerm="SBO:0000247" id="M_MAM03682e" name="Trans-Delta-2-Heptadecanoic Acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C17H31O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03682e">
+            <rdf:Description rdf:about="#M_MAM03682e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hpdece"/>
@@ -120052,10 +120104,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03568c" sboTerm="SBO:0000247" id="MAM03568c" name="Trans,Cis,Cis-2,11,14-Eicosatrienoic Acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H33O2">
+      <species metaid="M_MAM03568c" sboTerm="SBO:0000247" id="M_MAM03568c" name="Trans,Cis,Cis-2,11,14-Eicosatrienoic Acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H33O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03568c">
+            <rdf:Description rdf:about="#M_MAM03568c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/eic21114tr"/>
@@ -120066,10 +120118,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03568e" sboTerm="SBO:0000247" id="MAM03568e" name="Trans,Cis,Cis-2,11,14-Eicosatrienoic Acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H33O2">
+      <species metaid="M_MAM03568e" sboTerm="SBO:0000247" id="M_MAM03568e" name="Trans,Cis,Cis-2,11,14-Eicosatrienoic Acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H33O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03568e">
+            <rdf:Description rdf:about="#M_MAM03568e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/eic21114tr"/>
@@ -120080,10 +120132,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03283m" sboTerm="SBO:0000247" id="MAM03283m" name="5,8,11,14,17-Eicosapentenoic Acid" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H29O2">
+      <species metaid="M_MAM03283m" sboTerm="SBO:0000247" id="M_MAM03283m" name="5,8,11,14,17-Eicosapentenoic Acid" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H29O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03283m">
+            <rdf:Description rdf:about="#M_MAM03283m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/5eipenc"/>
@@ -120094,10 +120146,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03283c" sboTerm="SBO:0000247" id="MAM03283c" name="5,8,11,14,17-Eicosapentenoic Acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H29O2">
+      <species metaid="M_MAM03283c" sboTerm="SBO:0000247" id="M_MAM03283c" name="5,8,11,14,17-Eicosapentenoic Acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H29O2">
         <annotation>
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-            <rdf:Description rdf:about="#MAM03283c">
+            <rdf:Description rdf:about="#M_MAM03283c">
               <bqbiol:is>
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                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/5eipenc"/>
@@ -120108,10 +120160,10 @@
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-      <species metaid="MAM03283e" sboTerm="SBO:0000247" id="MAM03283e" name="5,8,11,14,17-Eicosapentenoic Acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H29O2">
+      <species metaid="M_MAM03283e" sboTerm="SBO:0000247" id="M_MAM03283e" name="5,8,11,14,17-Eicosapentenoic Acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H29O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03283e">
+            <rdf:Description rdf:about="#M_MAM03283e">
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                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/5eipenc"/>
@@ -120122,10 +120174,10 @@
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-      <species metaid="MAM00981e" sboTerm="SBO:0000247" id="MAM00981e" name="4-coumarate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C9H7O3">
+      <species metaid="M_MAM00981e" sboTerm="SBO:0000247" id="M_MAM00981e" name="4-coumarate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C9H7O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00981e">
+            <rdf:Description rdf:about="#M_MAM00981e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/T4hcinnm"/>
@@ -120140,10 +120192,10 @@
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-      <species metaid="MAM00971e" sboTerm="SBO:0000247" id="MAM00971e" name="4-androstene-3,17-dione" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H26O2">
+      <species metaid="M_MAM00971e" sboTerm="SBO:0000247" id="M_MAM00971e" name="4-androstene-3,17-dione" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H26O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00971e">
+            <rdf:Description rdf:about="#M_MAM00971e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/andrstndn"/>
@@ -120162,10 +120214,10 @@
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-      <species metaid="MAM00399c" sboTerm="SBO:0000247" id="MAM00399c" name="16alpha-hydroxydehydroepiandrosterone" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H28O3">
+      <species metaid="M_MAM00399c" sboTerm="SBO:0000247" id="M_MAM00399c" name="16alpha-hydroxydehydroepiandrosterone" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H28O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00399c">
+            <rdf:Description rdf:about="#M_MAM00399c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/eandrstrn"/>
@@ -120182,10 +120234,10 @@
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         </annotation>
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-      <species metaid="MAM00399e" sboTerm="SBO:0000247" id="MAM00399e" name="16alpha-hydroxydehydroepiandrosterone" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H28O3">
+      <species metaid="M_MAM00399e" sboTerm="SBO:0000247" id="M_MAM00399e" name="16alpha-hydroxydehydroepiandrosterone" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H28O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00399e">
+            <rdf:Description rdf:about="#M_MAM00399e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/eandrstrn"/>
@@ -120202,10 +120254,10 @@
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         </annotation>
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-      <species metaid="MAM01064e" sboTerm="SBO:0000247" id="MAM01064e" name="5alpha-androstane-3,17-dione" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H28O2">
+      <species metaid="M_MAM01064e" sboTerm="SBO:0000247" id="M_MAM01064e" name="5alpha-androstane-3,17-dione" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H28O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01064e">
+            <rdf:Description rdf:about="#M_MAM01064e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/andrstandn"/>
@@ -120223,10 +120275,10 @@
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         </annotation>
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-      <species metaid="MAM01065e" sboTerm="SBO:0000247" id="MAM01065e" name="5alpha-androstane-3alpha,17beta-diol" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H32O2">
+      <species metaid="M_MAM01065e" sboTerm="SBO:0000247" id="M_MAM01065e" name="5alpha-androstane-3alpha,17beta-diol" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H32O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01065e">
+            <rdf:Description rdf:about="#M_MAM01065e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:36713"/>
@@ -120242,10 +120294,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM00649e" sboTerm="SBO:0000247" id="MAM00649e" name="2-hydroxyestradiol-17beta" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H24O3">
+      <species metaid="M_MAM00649e" sboTerm="SBO:0000247" id="M_MAM00649e" name="2-hydroxyestradiol-17beta" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H24O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00649e">
+            <rdf:Description rdf:about="#M_MAM00649e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:28744"/>
@@ -120262,10 +120314,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM00660e" sboTerm="SBO:0000247" id="MAM00660e" name="2-methoxyestrone" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H24O3">
+      <species metaid="M_MAM00660e" sboTerm="SBO:0000247" id="M_MAM00660e" name="2-methoxyestrone" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H24O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00660e">
+            <rdf:Description rdf:about="#M_MAM00660e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:1189"/>
@@ -120282,10 +120334,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00659e" sboTerm="SBO:0000247" id="MAM00659e" name="2-methoxyestradiol-17beta" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H26O3">
+      <species metaid="M_MAM00659e" sboTerm="SBO:0000247" id="M_MAM00659e" name="2-methoxyestradiol-17beta" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H26O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00659e">
+            <rdf:Description rdf:about="#M_MAM00659e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:28955"/>
@@ -120302,10 +120354,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM00604e" sboTerm="SBO:0000247" id="MAM00604e" name="21-hydroxyallopregnanolone" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H34O3">
+      <species metaid="M_MAM00604e" sboTerm="SBO:0000247" id="M_MAM00604e" name="21-hydroxyallopregnanolone" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H34O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00604e">
+            <rdf:Description rdf:about="#M_MAM00604e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:805752"/>
@@ -120321,10 +120373,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00295e" sboTerm="SBO:0000247" id="MAM00295e" name="11-deoxycortisol" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H30O4">
+      <species metaid="M_MAM00295e" sboTerm="SBO:0000247" id="M_MAM00295e" name="11-deoxycortisol" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H30O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00295e">
+            <rdf:Description rdf:about="#M_MAM00295e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/11docrtsl"/>
@@ -120343,10 +120395,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00294e" sboTerm="SBO:0000247" id="MAM00294e" name="11-deoxycorticosterone" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H30O3">
+      <species metaid="M_MAM00294e" sboTerm="SBO:0000247" id="M_MAM00294e" name="11-deoxycorticosterone" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H30O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00294e">
+            <rdf:Description rdf:about="#M_MAM00294e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/11docrtstrn"/>
@@ -120364,10 +120416,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02763e" sboTerm="SBO:0000247" id="MAM02763e" name="pregnenolone" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H32O2">
+      <species metaid="M_MAM02763e" sboTerm="SBO:0000247" id="M_MAM02763e" name="pregnenolone" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H32O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02763e">
+            <rdf:Description rdf:about="#M_MAM02763e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/prgnlone"/>
@@ -120385,10 +120437,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01314e" sboTerm="SBO:0000247" id="MAM01314e" name="allopregnanolone" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H34O2">
+      <species metaid="M_MAM01314e" sboTerm="SBO:0000247" id="M_MAM01314e" name="allopregnanolone" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H34O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01314e">
+            <rdf:Description rdf:about="#M_MAM01314e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:50169"/>
@@ -120405,10 +120457,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00409e" sboTerm="SBO:0000247" id="MAM00409e" name="17alpha-hydroxyprogesterone" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H30O3">
+      <species metaid="M_MAM00409e" sboTerm="SBO:0000247" id="M_MAM00409e" name="17alpha-hydroxyprogesterone" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H30O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00409e">
+            <rdf:Description rdf:about="#M_MAM00409e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/17ahprgstrn"/>
@@ -120427,10 +120479,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00408e" sboTerm="SBO:0000247" id="MAM00408e" name="17alpha-hydroxypregnenolone" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H32O3">
+      <species metaid="M_MAM00408e" sboTerm="SBO:0000247" id="M_MAM00408e" name="17alpha-hydroxypregnenolone" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H32O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00408e">
+            <rdf:Description rdf:about="#M_MAM00408e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/17ahprgnlone"/>
@@ -120449,10 +120501,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01072e" sboTerm="SBO:0000247" id="MAM01072e" name="5alpha-pregnane-3,20-dione" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H32O2">
+      <species metaid="M_MAM01072e" sboTerm="SBO:0000247" id="M_MAM01072e" name="5alpha-pregnane-3,20-dione" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H32O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01072e">
+            <rdf:Description rdf:about="#M_MAM01072e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:28952"/>
@@ -120469,10 +120521,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02762e" sboTerm="SBO:0000247" id="MAM02762e" name="pregnenolone sulfate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C21H31O5S">
+      <species metaid="M_MAM02762e" sboTerm="SBO:0000247" id="M_MAM02762e" name="pregnenolone sulfate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C21H31O5S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02762e">
+            <rdf:Description rdf:about="#M_MAM02762e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/prgnlones"/>
@@ -120490,10 +120542,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00407e" sboTerm="SBO:0000247" id="MAM00407e" name="17alpha-hydroxypregnenolone sulfate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C21H31O6S">
+      <species metaid="M_MAM00407e" sboTerm="SBO:0000247" id="M_MAM00407e" name="17alpha-hydroxypregnenolone sulfate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C21H31O6S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00407e">
+            <rdf:Description rdf:about="#M_MAM00407e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM468425"/>
@@ -120505,10 +120557,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02473e" sboTerm="SBO:0000247" id="MAM02473e" name="methylamine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C1H6N">
+      <species metaid="M_MAM02473e" sboTerm="SBO:0000247" id="M_MAM02473e" name="methylamine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C1H6N">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02473e">
+            <rdf:Description rdf:about="#M_MAM02473e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/mma"/>
@@ -120524,10 +120576,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02601e" sboTerm="SBO:0000247" id="MAM02601e" name="N-methylhistamine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C6H12N3">
+      <species metaid="M_MAM02601e" sboTerm="SBO:0000247" id="M_MAM02601e" name="N-methylhistamine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C6H12N3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02601e">
+            <rdf:Description rdf:about="#M_MAM02601e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/mhista"/>
@@ -120543,10 +120595,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00988e" sboTerm="SBO:0000247" id="MAM00988e" name="4-hydroxy-2-nonenal" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H16O2">
+      <species metaid="M_MAM00988e" sboTerm="SBO:0000247" id="M_MAM00988e" name="4-hydroxy-2-nonenal" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H16O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00988e">
+            <rdf:Description rdf:about="#M_MAM00988e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:58968"/>
@@ -120562,10 +120614,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02518e" sboTerm="SBO:0000247" id="MAM02518e" name="N8-acetylspermidine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="C9H23N3O">
+      <species metaid="M_MAM02518e" sboTerm="SBO:0000247" id="M_MAM02518e" name="N8-acetylspermidine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="C9H23N3O">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02518e">
+            <rdf:Description rdf:about="#M_MAM02518e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C01029"/>
@@ -120578,10 +120630,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02603e" sboTerm="SBO:0000247" id="MAM02603e" name="N-methylsalsolinol" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C11H16NO2">
+      <species metaid="M_MAM02603e" sboTerm="SBO:0000247" id="M_MAM02603e" name="N-methylsalsolinol" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C11H16NO2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02603e">
+            <rdf:Description rdf:about="#M_MAM02603e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/hmdb/HMDB03892"/>
@@ -120594,10 +120646,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02875e" sboTerm="SBO:0000247" id="MAM02875e" name="salsolinol" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C10H14NO2">
+      <species metaid="M_MAM02875e" sboTerm="SBO:0000247" id="M_MAM02875e" name="salsolinol" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C10H14NO2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02875e">
+            <rdf:Description rdf:about="#M_MAM02875e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:123715"/>
@@ -120612,10 +120664,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02803e" sboTerm="SBO:0000247" id="MAM02803e" name="protoporphyrin" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C34H32N4O4">
+      <species metaid="M_MAM02803e" sboTerm="SBO:0000247" id="M_MAM02803e" name="protoporphyrin" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C34H32N4O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02803e">
+            <rdf:Description rdf:about="#M_MAM02803e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ppp9"/>
@@ -120629,10 +120681,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01045e" sboTerm="SBO:0000247" id="MAM01045e" name="5,10-methylene-THF" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C20H21N7O6">
+      <species metaid="M_MAM01045e" sboTerm="SBO:0000247" id="M_MAM01045e" name="5,10-methylene-THF" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C20H21N7O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01045e">
+            <rdf:Description rdf:about="#M_MAM01045e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/mlthf"/>
@@ -120647,10 +120699,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03088e" sboTerm="SBO:0000247" id="MAM03088e" name="tryptamine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C10H13N2">
+      <species metaid="M_MAM03088e" sboTerm="SBO:0000247" id="M_MAM03088e" name="tryptamine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C10H13N2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03088e">
+            <rdf:Description rdf:about="#M_MAM03088e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/trypta"/>
@@ -120666,10 +120718,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02891e" sboTerm="SBO:0000247" id="MAM02891e" name="selenomethionine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H11NO2Se">
+      <species metaid="M_MAM02891e" sboTerm="SBO:0000247" id="M_MAM02891e" name="selenomethionine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H11NO2Se">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02891e">
+            <rdf:Description rdf:about="#M_MAM02891e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/selmeth"/>
@@ -120686,10 +120738,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00028e" sboTerm="SBO:0000247" id="MAM00028e" name="(18R)-HEPE" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H29O3">
+      <species metaid="M_MAM00028e" sboTerm="SBO:0000247" id="M_MAM00028e" name="(18R)-HEPE" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H29O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00028e">
+            <rdf:Description rdf:about="#M_MAM00028e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:81563"/>
@@ -120702,10 +120754,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01039e" sboTerm="SBO:0000247" id="MAM01039e" name="5(S)-HEPE" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H29O3">
+      <species metaid="M_MAM01039e" sboTerm="SBO:0000247" id="M_MAM01039e" name="5(S)-HEPE" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H29O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01039e">
+            <rdf:Description rdf:about="#M_MAM01039e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/LMFA03070010"/>
@@ -120718,10 +120770,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01050e" sboTerm="SBO:0000247" id="MAM01050e" name="5,15-DiHETE" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O4">
+      <species metaid="M_MAM01050e" sboTerm="SBO:0000247" id="M_MAM01050e" name="5,15-DiHETE" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01050e">
+            <rdf:Description rdf:about="#M_MAM01050e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:72867"/>
@@ -120735,10 +120787,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00385e" sboTerm="SBO:0000247" id="MAM00385e" name="15-deoxy-prostaglandin J2" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H27O3">
+      <species metaid="M_MAM00385e" sboTerm="SBO:0000247" id="M_MAM00385e" name="15-deoxy-prostaglandin J2" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H27O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00385e">
+            <rdf:Description rdf:about="#M_MAM00385e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM164061"/>
@@ -120750,10 +120802,10 @@
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-      <species metaid="MAM00293e" sboTerm="SBO:0000247" id="MAM00293e" name="11-dehydro-thromboxane B2" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O6">
+      <species metaid="M_MAM00293e" sboTerm="SBO:0000247" id="M_MAM00293e" name="11-dehydro-thromboxane B2" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00293e">
+            <rdf:Description rdf:about="#M_MAM00293e">
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                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:136539"/>
@@ -120767,10 +120819,10 @@
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       </species>
-      <species metaid="MAM02823e" sboTerm="SBO:0000247" id="MAM02823e" name="quinonoid dihydrobiopterin" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H13N5O3">
+      <species metaid="M_MAM02823e" sboTerm="SBO:0000247" id="M_MAM02823e" name="quinonoid dihydrobiopterin" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H13N5O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02823e">
+            <rdf:Description rdf:about="#M_MAM02823e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:64277"/>
@@ -120786,10 +120838,10 @@
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-      <species metaid="MAM00248e" sboTerm="SBO:0000247" id="MAM00248e" name="1,3-diaminopropane" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="C3H12N2">
+      <species metaid="M_MAM00248e" sboTerm="SBO:0000247" id="M_MAM00248e" name="1,3-diaminopropane" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="C3H12N2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00248e">
+            <rdf:Description rdf:about="#M_MAM00248e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/13dampp"/>
@@ -120806,10 +120858,10 @@
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-      <species metaid="MAM02117e" sboTerm="SBO:0000247" id="MAM02117e" name="hexadecenoylcarnitine(9)" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H43NO4">
+      <species metaid="M_MAM02117e" sboTerm="SBO:0000247" id="M_MAM02117e" name="hexadecenoylcarnitine(9)" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H43NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02117e">
+            <rdf:Description rdf:about="#M_MAM02117e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hdd2crn"/>
@@ -120824,10 +120876,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM02503e" sboTerm="SBO:0000247" id="MAM02503e" name="N1-acetylspermidine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="C9H23N3O">
+      <species metaid="M_MAM02503e" sboTerm="SBO:0000247" id="M_MAM02503e" name="N1-acetylspermidine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="C9H23N3O">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02503e">
+            <rdf:Description rdf:about="#M_MAM02503e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:17927"/>
@@ -120842,10 +120894,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM01110e" sboTerm="SBO:0000247" id="MAM01110e" name="5-hydroxytryptophol" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H11NO2">
+      <species metaid="M_MAM01110e" sboTerm="SBO:0000247" id="M_MAM01110e" name="5-hydroxytryptophol" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H11NO2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01110e">
+            <rdf:Description rdf:about="#M_MAM01110e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/hmdb/HMDB01855"/>
@@ -120859,10 +120911,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM00727e" sboTerm="SBO:0000247" id="MAM00727e" name="3,4-dihydroxymandelate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C8H7O5">
+      <species metaid="M_MAM00727e" sboTerm="SBO:0000247" id="M_MAM00727e" name="3,4-dihydroxymandelate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C8H7O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00727e">
+            <rdf:Description rdf:about="#M_MAM00727e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/34dhoxmand"/>
@@ -120877,10 +120929,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01113e" sboTerm="SBO:0000247" id="MAM01113e" name="5-methoxytryptophol" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C11H13NO2">
+      <species metaid="M_MAM01113e" sboTerm="SBO:0000247" id="M_MAM01113e" name="5-methoxytryptophol" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C11H13NO2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01113e">
+            <rdf:Description rdf:about="#M_MAM01113e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:114833"/>
@@ -120895,10 +120947,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM01417e" sboTerm="SBO:0000247" id="MAM01417e" name="calcitriol" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H44O3">
+      <species metaid="M_MAM01417e" sboTerm="SBO:0000247" id="M_MAM01417e" name="calcitriol" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H44O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01417e">
+            <rdf:Description rdf:about="#M_MAM01417e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/1a25dhvitd3"/>
@@ -120917,10 +120969,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM02181c" sboTerm="SBO:0000247" id="MAM02181c" name="isobutyrylglycine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H10NO3">
+      <species metaid="M_MAM02181c" sboTerm="SBO:0000247" id="M_MAM02181c" name="isobutyrylglycine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H10NO3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02181c">
+            <rdf:Description rdf:about="#M_MAM02181c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/hmdb/HMDB00730"/>
@@ -120933,10 +120985,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM02181e" sboTerm="SBO:0000247" id="MAM02181e" name="isobutyrylglycine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H10NO3">
+      <species metaid="M_MAM02181e" sboTerm="SBO:0000247" id="M_MAM02181e" name="isobutyrylglycine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H10NO3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02181e">
+            <rdf:Description rdf:about="#M_MAM02181e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/hmdb/HMDB00730"/>
@@ -120949,10 +121001,10 @@
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         </annotation>
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-      <species metaid="MAM02534c" sboTerm="SBO:0000247" id="MAM02534c" name="N-acetyl-L-cysteine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C5H8NO3S">
+      <species metaid="M_MAM02534c" sboTerm="SBO:0000247" id="M_MAM02534c" name="N-acetyl-L-cysteine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C5H8NO3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02534c">
+            <rdf:Description rdf:about="#M_MAM02534c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM98606"/>
@@ -120964,10 +121016,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM02534e" sboTerm="SBO:0000247" id="MAM02534e" name="N-acetyl-L-cysteine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C5H8NO3S">
+      <species metaid="M_MAM02534e" sboTerm="SBO:0000247" id="M_MAM02534e" name="N-acetyl-L-cysteine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C5H8NO3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02534e">
+            <rdf:Description rdf:about="#M_MAM02534e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM98606"/>
@@ -120979,10 +121031,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02942c" sboTerm="SBO:0000247" id="MAM02942c" name="succinate semialdehyde" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C4H5O3">
+      <species metaid="M_MAM02942c" sboTerm="SBO:0000247" id="M_MAM02942c" name="succinate semialdehyde" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C4H5O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02942c">
+            <rdf:Description rdf:about="#M_MAM02942c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/sucsal"/>
@@ -120998,10 +121050,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02942e" sboTerm="SBO:0000247" id="MAM02942e" name="succinate semialdehyde" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C4H5O3">
+      <species metaid="M_MAM02942e" sboTerm="SBO:0000247" id="M_MAM02942e" name="succinate semialdehyde" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C4H5O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02942e">
+            <rdf:Description rdf:about="#M_MAM02942e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/sucsal"/>
@@ -121017,10 +121069,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00373e" sboTerm="SBO:0000247" id="MAM00373e" name="15(R)-HEPE" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H29O3">
+      <species metaid="M_MAM00373e" sboTerm="SBO:0000247" id="M_MAM00373e" name="15(R)-HEPE" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H29O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00373e">
+            <rdf:Description rdf:about="#M_MAM00373e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:90819"/>
@@ -121034,10 +121086,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01767e" sboTerm="SBO:0000247" id="MAM01767e" name="ecgonine-methyl ester" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H17NO3">
+      <species metaid="M_MAM01767e" sboTerm="SBO:0000247" id="M_MAM01767e" name="ecgonine-methyl ester" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H17NO3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01767e">
+            <rdf:Description rdf:about="#M_MAM01767e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/egme"/>
@@ -121052,10 +121104,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00324c" sboTerm="SBO:0000247" id="MAM00324c" name="12-hydroxy-arachidonate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O3">
+      <species metaid="M_MAM00324c" sboTerm="SBO:0000247" id="M_MAM00324c" name="12-hydroxy-arachidonate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00324c">
+            <rdf:Description rdf:about="#M_MAM00324c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/12harachd"/>
@@ -121069,10 +121121,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00324e" sboTerm="SBO:0000247" id="MAM00324e" name="12-hydroxy-arachidonate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O3">
+      <species metaid="M_MAM00324e" sboTerm="SBO:0000247" id="M_MAM00324e" name="12-hydroxy-arachidonate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00324e">
+            <rdf:Description rdf:about="#M_MAM00324e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/12harachd"/>
@@ -121086,10 +121138,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00428c" sboTerm="SBO:0000247" id="MAM00428c" name="18-hydroxy-arachidonate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O3">
+      <species metaid="M_MAM00428c" sboTerm="SBO:0000247" id="M_MAM00428c" name="18-hydroxy-arachidonate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00428c">
+            <rdf:Description rdf:about="#M_MAM00428c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/18harachd"/>
@@ -121103,10 +121155,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00428e" sboTerm="SBO:0000247" id="MAM00428e" name="18-hydroxy-arachidonate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O3">
+      <species metaid="M_MAM00428e" sboTerm="SBO:0000247" id="M_MAM00428e" name="18-hydroxy-arachidonate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00428e">
+            <rdf:Description rdf:about="#M_MAM00428e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/18harachd"/>
@@ -121120,10 +121172,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02933e" sboTerm="SBO:0000247" id="MAM02933e" name="squalene" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C30H50">
+      <species metaid="M_MAM02933e" sboTerm="SBO:0000247" id="M_MAM02933e" name="squalene" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C30H50">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02933e">
+            <rdf:Description rdf:about="#M_MAM02933e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/sql"/>
@@ -121140,10 +121192,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01101c" sboTerm="SBO:0000247" id="MAM01101c" name="5-guanidino-2-oxopentanoate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H11N3O3">
+      <species metaid="M_MAM01101c" sboTerm="SBO:0000247" id="M_MAM01101c" name="5-guanidino-2-oxopentanoate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H11N3O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01101c">
+            <rdf:Description rdf:about="#M_MAM01101c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/5g2oxpt"/>
@@ -121160,10 +121212,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01101e" sboTerm="SBO:0000247" id="MAM01101e" name="5-guanidino-2-oxopentanoate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H11N3O3">
+      <species metaid="M_MAM01101e" sboTerm="SBO:0000247" id="M_MAM01101e" name="5-guanidino-2-oxopentanoate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H11N3O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01101e">
+            <rdf:Description rdf:about="#M_MAM01101e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/5g2oxpt"/>
@@ -121180,10 +121232,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01660e" sboTerm="SBO:0000247" id="MAM01660e" name="dehydroepiandrosterone" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H28O2">
+      <species metaid="M_MAM01660e" sboTerm="SBO:0000247" id="M_MAM01660e" name="dehydroepiandrosterone" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H28O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01660e">
+            <rdf:Description rdf:about="#M_MAM01660e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dhea"/>
@@ -121201,10 +121253,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01790e" sboTerm="SBO:0000247" id="MAM01790e" name="estrone" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H22O2">
+      <species metaid="M_MAM01790e" sboTerm="SBO:0000247" id="M_MAM01790e" name="estrone" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H22O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01790e">
+            <rdf:Description rdf:about="#M_MAM01790e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/estrone"/>
@@ -121222,10 +121274,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00650e" sboTerm="SBO:0000247" id="MAM00650e" name="2-hydroxyestrone" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H22O3">
+      <species metaid="M_MAM00650e" sboTerm="SBO:0000247" id="M_MAM00650e" name="2-hydroxyestrone" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H22O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00650e">
+            <rdf:Description rdf:about="#M_MAM00650e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:1156"/>
@@ -121242,10 +121294,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01504c" sboTerm="SBO:0000247" id="MAM01504c" name="cholesterol-ester-palm" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C43H76O2">
+      <species metaid="M_MAM01504c" sboTerm="SBO:0000247" id="M_MAM01504c" name="cholesterol-ester-palm" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C43H76O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01504c">
+            <rdf:Description rdf:about="#M_MAM01504c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:3663"/>
@@ -121261,10 +121313,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01504e" sboTerm="SBO:0000247" id="MAM01504e" name="cholesterol-ester-palm" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C43H76O2">
+      <species metaid="M_MAM01504e" sboTerm="SBO:0000247" id="M_MAM01504e" name="cholesterol-ester-palm" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C43H76O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01504e">
+            <rdf:Description rdf:about="#M_MAM01504e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:3663"/>
@@ -121280,10 +121332,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00610e" sboTerm="SBO:0000247" id="MAM00610e" name="24-hydroxycholesterol" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H46O2">
+      <species metaid="M_MAM00610e" sboTerm="SBO:0000247" id="M_MAM00610e" name="24-hydroxycholesterol" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H46O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00610e">
+            <rdf:Description rdf:about="#M_MAM00610e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/xol24oh"/>
@@ -121302,10 +121354,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00623e" sboTerm="SBO:0000247" id="MAM00623e" name="26-hydroxycholesterol" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H46O2">
+      <species metaid="M_MAM00623e" sboTerm="SBO:0000247" id="M_MAM00623e" name="26-hydroxycholesterol" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H46O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00623e">
+            <rdf:Description rdf:about="#M_MAM00623e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/xol27oh"/>
@@ -121324,10 +121376,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00619c" sboTerm="SBO:0000247" id="MAM00619c" name="25-hydroxycholesterol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H46O2">
+      <species metaid="M_MAM00619c" sboTerm="SBO:0000247" id="M_MAM00619c" name="25-hydroxycholesterol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H46O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00619c">
+            <rdf:Description rdf:about="#M_MAM00619c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/xol25oh"/>
@@ -121343,10 +121395,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00619e" sboTerm="SBO:0000247" id="MAM00619e" name="25-hydroxycholesterol" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H46O2">
+      <species metaid="M_MAM00619e" sboTerm="SBO:0000247" id="M_MAM00619e" name="25-hydroxycholesterol" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H46O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00619e">
+            <rdf:Description rdf:about="#M_MAM00619e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/xol25oh"/>
@@ -121362,10 +121414,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01675e" sboTerm="SBO:0000247" id="MAM01675e" name="desmosterol" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H44O">
+      <species metaid="M_MAM01675e" sboTerm="SBO:0000247" id="M_MAM01675e" name="desmosterol" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H44O">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01675e">
+            <rdf:Description rdf:about="#M_MAM01675e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dsmsterol"/>
@@ -121384,10 +121436,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01512e" sboTerm="SBO:0000247" id="MAM01512e" name="cholesterol-sulfate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C27H45O4S">
+      <species metaid="M_MAM01512e" sboTerm="SBO:0000247" id="M_MAM01512e" name="cholesterol-sulfate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C27H45O4S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01512e">
+            <rdf:Description rdf:about="#M_MAM01512e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/chsterols"/>
@@ -121405,10 +121457,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00807e" sboTerm="SBO:0000247" id="MAM00807e" name="3-iodo-L-tyrosine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H10INO3">
+      <species metaid="M_MAM00807e" sboTerm="SBO:0000247" id="M_MAM00807e" name="3-iodo-L-tyrosine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H10INO3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00807e">
+            <rdf:Description rdf:about="#M_MAM00807e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/3ityr__L"/>
@@ -121424,10 +121476,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00739e" sboTerm="SBO:0000247" id="MAM00739e" name="3,5-diiodo-L-tyrosine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H9I2NO3">
+      <species metaid="M_MAM00739e" sboTerm="SBO:0000247" id="M_MAM00739e" name="3,5-diiodo-L-tyrosine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H9I2NO3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00739e">
+            <rdf:Description rdf:about="#M_MAM00739e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/35diotyr"/>
@@ -121443,10 +121495,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00350e" sboTerm="SBO:0000247" id="MAM00350e" name="13-cis-retinoate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H27O2">
+      <species metaid="M_MAM00350e" sboTerm="SBO:0000247" id="M_MAM00350e" name="13-cis-retinoate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H27O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00350e">
+            <rdf:Description rdf:about="#M_MAM00350e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/13_cis_retn"/>
@@ -121464,10 +121516,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01231e" sboTerm="SBO:0000247" id="MAM01231e" name="9-cis-retinoate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H27O2">
+      <species metaid="M_MAM01231e" sboTerm="SBO:0000247" id="M_MAM01231e" name="9-cis-retinoate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H27O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01231e">
+            <rdf:Description rdf:about="#M_MAM01231e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM10472"/>
@@ -121479,10 +121531,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM04074c" sboTerm="SBO:0000247" id="MAM04074c" name="Very Low Density Lipoprotein" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="X">
+      <species metaid="M_MAM04074c" sboTerm="SBO:0000247" id="M_MAM04074c" name="Very Low Density Lipoprotein" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="X">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM04074c">
+            <rdf:Description rdf:about="#M_MAM04074c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/vldl_hs"/>
@@ -121492,10 +121544,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM04074e" sboTerm="SBO:0000247" id="MAM04074e" name="Very Low Density Lipoprotein" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="X">
+      <species metaid="M_MAM04074e" sboTerm="SBO:0000247" id="M_MAM04074e" name="Very Low Density Lipoprotein" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="X">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM04074e">
+            <rdf:Description rdf:about="#M_MAM04074e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/vldl_hs"/>
@@ -121505,10 +121557,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01351e" sboTerm="SBO:0000247" id="MAM01351e" name="apoB100" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C23182H36564N6112O6944S104">
+      <species metaid="M_MAM01351e" sboTerm="SBO:0000247" id="M_MAM01351e" name="apoB100" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C23182H36564N6112O6944S104">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01351e">
+            <rdf:Description rdf:about="#M_MAM01351e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/PROTEIN"/>
@@ -121519,10 +121571,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01353e" sboTerm="SBO:0000247" id="MAM01353e" name="apoC1" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C421H695N109O124S2">
+      <species metaid="M_MAM01353e" sboTerm="SBO:0000247" id="M_MAM01353e" name="apoC1" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C421H695N109O124S2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01353e">
+            <rdf:Description rdf:about="#M_MAM01353e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/PROTEIN"/>
@@ -121533,10 +121585,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01354e" sboTerm="SBO:0000247" id="MAM01354e" name="apoC2" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C509H801N123O159S3">
+      <species metaid="M_MAM01354e" sboTerm="SBO:0000247" id="M_MAM01354e" name="apoC2" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C509H801N123O159S3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01354e">
+            <rdf:Description rdf:about="#M_MAM01354e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/PROTEIN"/>
@@ -121547,10 +121599,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01355e" sboTerm="SBO:0000247" id="MAM01355e" name="apoC3" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C484H760N128O149S3">
+      <species metaid="M_MAM01355e" sboTerm="SBO:0000247" id="M_MAM01355e" name="apoC3" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C484H760N128O149S3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01355e">
+            <rdf:Description rdf:about="#M_MAM01355e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/PROTEIN"/>
@@ -121561,10 +121613,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01359e" sboTerm="SBO:0000247" id="MAM01359e" name="apoE" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C1569H2559N477O483S10">
+      <species metaid="M_MAM01359e" sboTerm="SBO:0000247" id="M_MAM01359e" name="apoE" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C1569H2559N477O483S10">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01359e">
+            <rdf:Description rdf:about="#M_MAM01359e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/lipidmaps/PROTEIN"/>
@@ -121575,10 +121627,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03692e" sboTerm="SBO:0000247" id="MAM03692e" name="Intermediate Density Lipoprotein" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="X">
+      <species metaid="M_MAM03692e" sboTerm="SBO:0000247" id="M_MAM03692e" name="Intermediate Density Lipoprotein" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="X">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03692e">
+            <rdf:Description rdf:about="#M_MAM03692e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/idl_hs"/>
@@ -121589,10 +121641,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03710e" sboTerm="SBO:0000247" id="MAM03710e" name="Low Density Lipoprotein" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="X">
+      <species metaid="M_MAM03710e" sboTerm="SBO:0000247" id="M_MAM03710e" name="Low Density Lipoprotein" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="X">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03710e">
+            <rdf:Description rdf:about="#M_MAM03710e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ldl_hs"/>
@@ -121603,10 +121655,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03647e" sboTerm="SBO:0000247" id="MAM03647e" name="High Density Lipoprotein" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="X">
+      <species metaid="M_MAM03647e" sboTerm="SBO:0000247" id="M_MAM03647e" name="High Density Lipoprotein" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="X">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03647e">
+            <rdf:Description rdf:about="#M_MAM03647e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hdl_hs"/>
@@ -121617,10 +121669,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03511c" sboTerm="SBO:0000247" id="MAM03511c" name="Chylomicron Lipoprotein" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="X">
+      <species metaid="M_MAM03511c" sboTerm="SBO:0000247" id="M_MAM03511c" name="Chylomicron Lipoprotein" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="X">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03511c">
+            <rdf:Description rdf:about="#M_MAM03511c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/chylo_hs"/>
@@ -121630,10 +121682,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03511e" sboTerm="SBO:0000247" id="MAM03511e" name="Chylomicron Lipoprotein" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="X">
+      <species metaid="M_MAM03511e" sboTerm="SBO:0000247" id="M_MAM03511e" name="Chylomicron Lipoprotein" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="X">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03511e">
+            <rdf:Description rdf:about="#M_MAM03511e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/chylo_hs"/>
@@ -121643,10 +121695,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00576e" sboTerm="SBO:0000247" id="MAM00576e" name="2,5-dihydroxybenzoate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C7H5O4">
+      <species metaid="M_MAM00576e" sboTerm="SBO:0000247" id="M_MAM00576e" name="2,5-dihydroxybenzoate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C7H5O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00576e">
+            <rdf:Description rdf:about="#M_MAM00576e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:17189"/>
@@ -121661,10 +121713,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01839e" sboTerm="SBO:0000247" id="MAM01839e" name="formyl-N-acetyl-5-methoxykynurenamine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C13H16N2O4">
+      <species metaid="M_MAM01839e" sboTerm="SBO:0000247" id="M_MAM01839e" name="formyl-N-acetyl-5-methoxykynurenamine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C13H16N2O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01839e">
+            <rdf:Description rdf:about="#M_MAM01839e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/fna5moxam"/>
@@ -121681,10 +121733,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02714e" sboTerm="SBO:0000247" id="MAM02714e" name="peroxynitrite" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="NO3">
+      <species metaid="M_MAM02714e" sboTerm="SBO:0000247" id="M_MAM02714e" name="peroxynitrite" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="NO3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02714e">
+            <rdf:Description rdf:about="#M_MAM02714e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:25941"/>
@@ -121699,10 +121751,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02134e" sboTerm="SBO:0000247" id="MAM02134e" name="homocysteine-thiolactone" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C4H8NOS">
+      <species metaid="M_MAM02134e" sboTerm="SBO:0000247" id="M_MAM02134e" name="homocysteine-thiolactone" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C4H8NOS">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02134e">
+            <rdf:Description rdf:about="#M_MAM02134e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM59433"/>
@@ -121714,10 +121766,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01927e" sboTerm="SBO:0000247" id="MAM01927e" name="gamma-glutamyl-cysteine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C8H13N2O5S">
+      <species metaid="M_MAM01927e" sboTerm="SBO:0000247" id="M_MAM01927e" name="gamma-glutamyl-cysteine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C8H13N2O5S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01927e">
+            <rdf:Description rdf:about="#M_MAM01927e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/glucys"/>
@@ -121733,10 +121785,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02460e" sboTerm="SBO:0000247" id="MAM02460e" name="melatonin" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C13H16N2O2">
+      <species metaid="M_MAM02460e" sboTerm="SBO:0000247" id="M_MAM02460e" name="melatonin" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C13H16N2O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02460e">
+            <rdf:Description rdf:about="#M_MAM02460e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/melatn"/>
@@ -121754,10 +121806,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01161e" sboTerm="SBO:0000247" id="MAM01161e" name="6-hydroxymelatonin" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C13H16N2O3">
+      <species metaid="M_MAM01161e" sboTerm="SBO:0000247" id="M_MAM01161e" name="6-hydroxymelatonin" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C13H16N2O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01161e">
+            <rdf:Description rdf:about="#M_MAM01161e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/6hoxmelatn"/>
@@ -121774,10 +121826,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02752e" sboTerm="SBO:0000247" id="MAM02752e" name="picolinic acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H4NO2">
+      <species metaid="M_MAM02752e" sboTerm="SBO:0000247" id="M_MAM02752e" name="picolinic acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H4NO2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02752e">
+            <rdf:Description rdf:about="#M_MAM02752e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:28747"/>
@@ -121793,10 +121845,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03125e" sboTerm="SBO:0000247" id="MAM03125e" name="uroporphyrin I" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-8" fbc:chemicalFormula="C40H30N4O16">
+      <species metaid="M_MAM03125e" sboTerm="SBO:0000247" id="M_MAM03125e" name="uroporphyrin I" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-8" fbc:chemicalFormula="C40H30N4O16">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03125e">
+            <rdf:Description rdf:about="#M_MAM03125e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:27484"/>
@@ -121810,10 +121862,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02756e" sboTerm="SBO:0000247" id="MAM02756e" name="porphobilinogen" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H13N2O4">
+      <species metaid="M_MAM02756e" sboTerm="SBO:0000247" id="M_MAM02756e" name="porphobilinogen" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H13N2O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02756e">
+            <rdf:Description rdf:about="#M_MAM02756e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ppbng"/>
@@ -121829,10 +121881,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02771e" sboTerm="SBO:0000247" id="MAM02771e" name="propane-1,2-diol" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H8O2">
+      <species metaid="M_MAM02771e" sboTerm="SBO:0000247" id="M_MAM02771e" name="propane-1,2-diol" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H8O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02771e">
+            <rdf:Description rdf:about="#M_MAM02771e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/12ppd__R"/>
@@ -121851,10 +121903,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02870e" sboTerm="SBO:0000247" id="MAM02870e" name="S-adenosylmethioninamine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="C14H24N6O3S">
+      <species metaid="M_MAM02870e" sboTerm="SBO:0000247" id="M_MAM02870e" name="S-adenosylmethioninamine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="C14H24N6O3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02870e">
+            <rdf:Description rdf:about="#M_MAM02870e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ametam"/>
@@ -121870,10 +121922,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02425e" sboTerm="SBO:0000247" id="MAM02425e" name="L-xylulose" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H10O5">
+      <species metaid="M_MAM02425e" sboTerm="SBO:0000247" id="M_MAM02425e" name="L-xylulose" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H10O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02425e">
+            <rdf:Description rdf:about="#M_MAM02425e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/xylu__L"/>
@@ -121890,10 +121942,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01759e" sboTerm="SBO:0000247" id="MAM01759e" name="D-xylulose" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H10O5">
+      <species metaid="M_MAM01759e" sboTerm="SBO:0000247" id="M_MAM01759e" name="D-xylulose" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H10O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01759e">
+            <rdf:Description rdf:about="#M_MAM01759e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/xylu__D"/>
@@ -121910,10 +121962,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02441e" sboTerm="SBO:0000247" id="MAM02441e" name="malonic-dialdehyde" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C3H3O2">
+      <species metaid="M_MAM02441e" sboTerm="SBO:0000247" id="M_MAM02441e" name="malonic-dialdehyde" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C3H3O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02441e">
+            <rdf:Description rdf:about="#M_MAM02441e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:566274"/>
@@ -121929,10 +121981,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02166e" sboTerm="SBO:0000247" id="MAM02166e" name="imidazole-4-acetate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C5H5N2O2">
+      <species metaid="M_MAM02166e" sboTerm="SBO:0000247" id="M_MAM02166e" name="imidazole-4-acetate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C5H5N2O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02166e">
+            <rdf:Description rdf:about="#M_MAM02166e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/im4ac"/>
@@ -121948,10 +122000,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01332e" sboTerm="SBO:0000247" id="MAM01332e" name="aminoacetone" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C3H8NO">
+      <species metaid="M_MAM01332e" sboTerm="SBO:0000247" id="M_MAM01332e" name="aminoacetone" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C3H8NO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01332e">
+            <rdf:Description rdf:about="#M_MAM01332e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/aact"/>
@@ -121965,10 +122017,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02927e" sboTerm="SBO:0000247" id="MAM02927e" name="sphinganine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C18H40NO2">
+      <species metaid="M_MAM02927e" sboTerm="SBO:0000247" id="M_MAM02927e" name="sphinganine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C18H40NO2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02927e">
+            <rdf:Description rdf:about="#M_MAM02927e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/sphgn"/>
@@ -121985,10 +122037,10 @@
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-      <species metaid="MAM00635e" sboTerm="SBO:0000247" id="MAM00635e" name="2-arachidonoylglycerol" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H38O4">
+      <species metaid="M_MAM00635e" sboTerm="SBO:0000247" id="M_MAM00635e" name="2-arachidonoylglycerol" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H38O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00635e">
+            <rdf:Description rdf:about="#M_MAM00635e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:52392"/>
@@ -122005,10 +122057,10 @@
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       </species>
-      <species metaid="MAM02766e" sboTerm="SBO:0000247" id="MAM02766e" name="pristanic acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C19H37O2">
+      <species metaid="M_MAM02766e" sboTerm="SBO:0000247" id="M_MAM02766e" name="pristanic acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C19H37O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02766e">
+            <rdf:Description rdf:about="#M_MAM02766e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/prist"/>
@@ -122025,10 +122077,10 @@
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         </annotation>
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-      <species metaid="MAM00314e" sboTerm="SBO:0000247" id="MAM00314e" name="12,13-hydroxyoctadec-9(z)-enoate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H33O4">
+      <species metaid="M_MAM00314e" sboTerm="SBO:0000247" id="M_MAM00314e" name="12,13-hydroxyoctadec-9(z)-enoate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H33O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00314e">
+            <rdf:Description rdf:about="#M_MAM00314e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/hmdb/HMDB04705"/>
@@ -122042,10 +122094,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM01220e" sboTerm="SBO:0000247" id="MAM01220e" name="9,10-hydroxyoctadec-12(Z)-enoate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H33O4">
+      <species metaid="M_MAM01220e" sboTerm="SBO:0000247" id="M_MAM01220e" name="9,10-hydroxyoctadec-12(Z)-enoate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H33O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01220e">
+            <rdf:Description rdf:about="#M_MAM01220e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/hmdb/HMDB04704"/>
@@ -122059,10 +122111,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM01841e" sboTerm="SBO:0000247" id="MAM01841e" name="fructose-1,6-bisphosphate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C6H10O12P2">
+      <species metaid="M_MAM01841e" sboTerm="SBO:0000247" id="M_MAM01841e" name="fructose-1,6-bisphosphate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C6H10O12P2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01841e">
+            <rdf:Description rdf:about="#M_MAM01841e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/fdp"/>
@@ -122077,10 +122129,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01601e" sboTerm="SBO:0000247" id="MAM01601e" name="cocaine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C17H21NO4">
+      <species metaid="M_MAM01601e" sboTerm="SBO:0000247" id="M_MAM01601e" name="cocaine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C17H21NO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01601e">
+            <rdf:Description rdf:about="#M_MAM01601e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/coke"/>
@@ -122096,10 +122148,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01073e" sboTerm="SBO:0000247" id="MAM01073e" name="5-amino-2-oxopentanoic acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H9NO3">
+      <species metaid="M_MAM01073e" sboTerm="SBO:0000247" id="M_MAM01073e" name="5-amino-2-oxopentanoic acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H9NO3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01073e">
+            <rdf:Description rdf:about="#M_MAM01073e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/5a2opntn"/>
@@ -122116,10 +122168,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01073c" sboTerm="SBO:0000247" id="MAM01073c" name="5-amino-2-oxopentanoic acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H9NO3">
+      <species metaid="M_MAM01073c" sboTerm="SBO:0000247" id="M_MAM01073c" name="5-amino-2-oxopentanoic acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H9NO3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01073c">
+            <rdf:Description rdf:about="#M_MAM01073c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/5a2opntn"/>
@@ -122136,10 +122188,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03565c" sboTerm="SBO:0000247" id="MAM03565c" name="Dopamine 4-O-Sulphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H11NO5S">
+      <species metaid="M_MAM03565c" sboTerm="SBO:0000247" id="M_MAM03565c" name="Dopamine 4-O-Sulphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H11NO5S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03565c">
+            <rdf:Description rdf:about="#M_MAM03565c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dopa4sf"/>
@@ -122151,10 +122203,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03564c" sboTerm="SBO:0000247" id="MAM03564c" name="Dopamine-4-O-Glucuronide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C14H19NO8">
+      <species metaid="M_MAM03564c" sboTerm="SBO:0000247" id="M_MAM03564c" name="Dopamine-4-O-Glucuronide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C14H19NO8">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03564c">
+            <rdf:Description rdf:about="#M_MAM03564c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dopa4glcur"/>
@@ -122166,10 +122218,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03563c" sboTerm="SBO:0000247" id="MAM03563c" name="Dopamine-3-O-Glucuronide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C14H19NO8">
+      <species metaid="M_MAM03563c" sboTerm="SBO:0000247" id="M_MAM03563c" name="Dopamine-3-O-Glucuronide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C14H19NO8">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03563c">
+            <rdf:Description rdf:about="#M_MAM03563c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dopa3glcur"/>
@@ -122181,10 +122233,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03197c" sboTerm="SBO:0000247" id="MAM03197c" name="3,4-Dihydroxyphenylethanol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H10O3">
+      <species metaid="M_MAM03197c" sboTerm="SBO:0000247" id="M_MAM03197c" name="3,4-Dihydroxyphenylethanol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H10O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03197c">
+            <rdf:Description rdf:about="#M_MAM03197c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/34dhpe"/>
@@ -122196,10 +122248,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM03565e" sboTerm="SBO:0000247" id="MAM03565e" name="Dopamine 4-O-Sulphate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H11NO5S">
+      <species metaid="M_MAM03565e" sboTerm="SBO:0000247" id="M_MAM03565e" name="Dopamine 4-O-Sulphate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H11NO5S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03565e">
+            <rdf:Description rdf:about="#M_MAM03565e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dopa4sf"/>
@@ -122211,10 +122263,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03564e" sboTerm="SBO:0000247" id="MAM03564e" name="Dopamine-4-O-Glucuronide" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C14H19NO8">
+      <species metaid="M_MAM03564e" sboTerm="SBO:0000247" id="M_MAM03564e" name="Dopamine-4-O-Glucuronide" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C14H19NO8">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03564e">
+            <rdf:Description rdf:about="#M_MAM03564e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dopa4glcur"/>
@@ -122226,10 +122278,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03563e" sboTerm="SBO:0000247" id="MAM03563e" name="Dopamine-3-O-Glucuronide" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C14H19NO8">
+      <species metaid="M_MAM03563e" sboTerm="SBO:0000247" id="M_MAM03563e" name="Dopamine-3-O-Glucuronide" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C14H19NO8">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03563e">
+            <rdf:Description rdf:about="#M_MAM03563e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dopa3glcur"/>
@@ -122241,10 +122293,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01139e" sboTerm="SBO:0000247" id="MAM01139e" name="5-S-glutathionyl-L-dopa" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C19H25N4O10S">
+      <species metaid="M_MAM01139e" sboTerm="SBO:0000247" id="M_MAM01139e" name="5-S-glutathionyl-L-dopa" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C19H25N4O10S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01139e">
+            <rdf:Description rdf:about="#M_MAM01139e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM164352"/>
@@ -122255,10 +122307,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03282e" sboTerm="SBO:0000247" id="MAM03282e" name="5-S-Cysteinylglycine Dopa" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C14H19N3O7S">
+      <species metaid="M_MAM03282e" sboTerm="SBO:0000247" id="M_MAM03282e" name="5-S-Cysteinylglycine Dopa" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C14H19N3O7S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03282e">
+            <rdf:Description rdf:about="#M_MAM03282e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/5cysgly34dhphe"/>
@@ -122270,10 +122322,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM01134e" sboTerm="SBO:0000247" id="MAM01134e" name="5-S-cysteinyldopa" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C12H16N2O6S">
+      <species metaid="M_MAM01134e" sboTerm="SBO:0000247" id="M_MAM01134e" name="5-S-cysteinyldopa" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C12H16N2O6S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01134e">
+            <rdf:Description rdf:about="#M_MAM01134e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C17935"/>
@@ -122287,10 +122339,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM03295c" sboTerm="SBO:0000247" id="MAM03295c" name="6-Hydroxydopamine-Quinone" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H10NO3">
+      <species metaid="M_MAM03295c" sboTerm="SBO:0000247" id="M_MAM03295c" name="6-Hydroxydopamine-Quinone" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H10NO3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03295c">
+            <rdf:Description rdf:about="#M_MAM03295c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/6hddopaqn"/>
@@ -122301,10 +122353,10 @@
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       </species>
-      <species metaid="MAM03281c" sboTerm="SBO:0000247" id="MAM03281c" name="5-S-Cysteinyldopamine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C11H17N2O4S">
+      <species metaid="M_MAM03281c" sboTerm="SBO:0000247" id="M_MAM03281c" name="5-S-Cysteinyldopamine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C11H17N2O4S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03281c">
+            <rdf:Description rdf:about="#M_MAM03281c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/5cysdopa"/>
@@ -122315,10 +122367,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM02160c" sboTerm="SBO:0000247" id="MAM02160c" name="2,3-Dihydro-1H-Indole-5,6-Dione" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H7NO2">
+      <species metaid="M_MAM02160c" sboTerm="SBO:0000247" id="M_MAM02160c" name="2,3-Dihydro-1H-Indole-5,6-Dione" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H7NO2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02160c">
+            <rdf:Description rdf:about="#M_MAM02160c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/23dh1i56dio"/>
@@ -122330,10 +122382,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03270c" sboTerm="SBO:0000247" id="MAM03270c" name="4-S-Glutathionyl-5,6-Dihydroxyindoline" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H23N4O8S">
+      <species metaid="M_MAM03270c" sboTerm="SBO:0000247" id="M_MAM03270c" name="4-S-Glutathionyl-5,6-Dihydroxyindoline" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H23N4O8S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03270c">
+            <rdf:Description rdf:about="#M_MAM03270c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/4glu56dihdind"/>
@@ -122344,10 +122396,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03270e" sboTerm="SBO:0000247" id="MAM03270e" name="4-S-Glutathionyl-5,6-Dihydroxyindoline" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H23N4O8S">
+      <species metaid="M_MAM03270e" sboTerm="SBO:0000247" id="M_MAM03270e" name="4-S-Glutathionyl-5,6-Dihydroxyindoline" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H23N4O8S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03270e">
+            <rdf:Description rdf:about="#M_MAM03270e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/4glu56dihdind"/>
@@ -122358,10 +122410,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM03281e" sboTerm="SBO:0000247" id="MAM03281e" name="5-S-Cysteinyldopamine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C11H17N2O4S">
+      <species metaid="M_MAM03281e" sboTerm="SBO:0000247" id="M_MAM03281e" name="5-S-Cysteinyldopamine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C11H17N2O4S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03281e">
+            <rdf:Description rdf:about="#M_MAM03281e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/5cysdopa"/>
@@ -122372,10 +122424,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01138e" sboTerm="SBO:0000247" id="MAM01138e" name="5-S-glutathionyl-dopamine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H26N4O8S">
+      <species metaid="M_MAM01138e" sboTerm="SBO:0000247" id="M_MAM01138e" name="5-S-glutathionyl-dopamine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H26N4O8S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01138e">
+            <rdf:Description rdf:about="#M_MAM01138e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM164351"/>
@@ -122387,10 +122439,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01154e" sboTerm="SBO:0000247" id="MAM01154e" name="6,7-dihydroxy-1,2,3,4-tetrahydroisoquinoline" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C9H12NO2">
+      <species metaid="M_MAM01154e" sboTerm="SBO:0000247" id="M_MAM01154e" name="6,7-dihydroxy-1,2,3,4-tetrahydroisoquinoline" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C9H12NO2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01154e">
+            <rdf:Description rdf:about="#M_MAM01154e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:110006"/>
@@ -122404,10 +122456,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00231e" sboTerm="SBO:0000247" id="MAM00231e" name="1,2-dehydrosalsolinol" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H11NO2">
+      <species metaid="M_MAM00231e" sboTerm="SBO:0000247" id="M_MAM00231e" name="1,2-dehydrosalsolinol" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H11NO2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00231e">
+            <rdf:Description rdf:about="#M_MAM00231e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM32113"/>
@@ -122419,10 +122471,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01699r" sboTerm="SBO:0000247" id="MAM01699r" name="dihydroceramide pool" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H38NO2RCO">
+      <species metaid="M_MAM01699r" sboTerm="SBO:0000247" id="M_MAM01699r" name="dihydroceramide pool" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H38NO2RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01699r">
+            <rdf:Description rdf:about="#M_MAM01699r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dhcrm_hs"/>
@@ -122436,10 +122488,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02927g" sboTerm="SBO:0000247" id="MAM02927g" name="sphinganine" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C18H40NO2">
+      <species metaid="M_MAM02927g" sboTerm="SBO:0000247" id="M_MAM02927g" name="sphinganine" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C18H40NO2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02927g">
+            <rdf:Description rdf:about="#M_MAM02927g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/sphgn"/>
@@ -122456,10 +122508,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01699g" sboTerm="SBO:0000247" id="MAM01699g" name="dihydroceramide pool" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H38NO2RCO">
+      <species metaid="M_MAM01699g" sboTerm="SBO:0000247" id="M_MAM01699g" name="dihydroceramide pool" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H38NO2RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01699g">
+            <rdf:Description rdf:about="#M_MAM01699g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dhcrm_hs"/>
@@ -122473,10 +122525,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03863g" sboTerm="SBO:0000247" id="MAM03863g" name="Phytoceramide" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H38NO3RCO">
+      <species metaid="M_MAM03863g" sboTerm="SBO:0000247" id="M_MAM03863g" name="Phytoceramide" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H38NO3RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03863g">
+            <rdf:Description rdf:about="#M_MAM03863g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/phcrm_hs"/>
@@ -122487,10 +122539,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02749g" sboTerm="SBO:0000247" id="MAM02749g" name="phytosphingosine" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C18H40NO3">
+      <species metaid="M_MAM02749g" sboTerm="SBO:0000247" id="M_MAM02749g" name="phytosphingosine" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C18H40NO3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02749g">
+            <rdf:Description rdf:about="#M_MAM02749g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/phsphings"/>
@@ -122502,10 +122554,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03863r" sboTerm="SBO:0000247" id="MAM03863r" name="Phytoceramide" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H38NO3RCO">
+      <species metaid="M_MAM03863r" sboTerm="SBO:0000247" id="M_MAM03863r" name="Phytoceramide" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H38NO3RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03863r">
+            <rdf:Description rdf:about="#M_MAM03863r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/phcrm_hs"/>
@@ -122516,10 +122568,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02749r" sboTerm="SBO:0000247" id="MAM02749r" name="phytosphingosine" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C18H40NO3">
+      <species metaid="M_MAM02749r" sboTerm="SBO:0000247" id="M_MAM02749r" name="phytosphingosine" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C18H40NO3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02749r">
+            <rdf:Description rdf:about="#M_MAM02749r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/phsphings"/>
@@ -122531,10 +122583,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03586e" sboTerm="SBO:0000247" id="MAM03586e" name="Galactosyl Glucosyl Ceramide" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C30H56NO12RCO">
+      <species metaid="M_MAM03586e" sboTerm="SBO:0000247" id="M_MAM03586e" name="Galactosyl Glucosyl Ceramide" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C30H56NO12RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03586e">
+            <rdf:Description rdf:about="#M_MAM03586e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/galgluside_hs"/>
@@ -122546,10 +122598,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03635l" sboTerm="SBO:0000247" id="MAM03635l" name="Ganglioside Gm1" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C55H95N3O30RCO">
+      <species metaid="M_MAM03635l" sboTerm="SBO:0000247" id="M_MAM03635l" name="Ganglioside Gm1" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C55H95N3O30RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03635l">
+            <rdf:Description rdf:about="#M_MAM03635l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/gm1_hs"/>
@@ -122564,10 +122616,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01905l" sboTerm="SBO:0000247" id="MAM01905l" name="GA2" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C38H69N2O17RCO">
+      <species metaid="M_MAM01905l" sboTerm="SBO:0000247" id="M_MAM01905l" name="GA2" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C38H69N2O17RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01905l">
+            <rdf:Description rdf:about="#M_MAM01905l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ga2_hs"/>
@@ -122581,10 +122633,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01904l" sboTerm="SBO:0000247" id="MAM01904l" name="GA1" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C44H79N2O22RCO">
+      <species metaid="M_MAM01904l" sboTerm="SBO:0000247" id="M_MAM01904l" name="GA1" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C44H79N2O22RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01904l">
+            <rdf:Description rdf:about="#M_MAM01904l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ga1_hs"/>
@@ -122598,10 +122650,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01946l" sboTerm="SBO:0000247" id="MAM01946l" name="GD2" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C60H101N4O33RCO">
+      <species metaid="M_MAM01946l" sboTerm="SBO:0000247" id="M_MAM01946l" name="GD2" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C60H101N4O33RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01946l">
+            <rdf:Description rdf:about="#M_MAM01946l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/gd2_hs"/>
@@ -122615,10 +122667,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01943l" sboTerm="SBO:0000247" id="MAM01943l" name="GD1b" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C66H111N4O38RCO">
+      <species metaid="M_MAM01943l" sboTerm="SBO:0000247" id="M_MAM01943l" name="GD1b" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C66H111N4O38RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01943l">
+            <rdf:Description rdf:about="#M_MAM01943l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/gd1b_hs"/>
@@ -122632,10 +122684,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02014l" sboTerm="SBO:0000247" id="MAM02014l" name="GM2alpha" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C49H85N3O25RCO">
+      <species metaid="M_MAM02014l" sboTerm="SBO:0000247" id="M_MAM02014l" name="GM2alpha" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C49H85N3O25RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02014l">
+            <rdf:Description rdf:about="#M_MAM02014l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/gm2a_hs"/>
@@ -122647,10 +122699,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02009l" sboTerm="SBO:0000247" id="MAM02009l" name="GM1alpha" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C55H95N3O30RCO">
+      <species metaid="M_MAM02009l" sboTerm="SBO:0000247" id="M_MAM02009l" name="GM1alpha" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C55H95N3O30RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02009l">
+            <rdf:Description rdf:about="#M_MAM02009l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/gm1a_hs"/>
@@ -122662,10 +122714,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03863c" sboTerm="SBO:0000247" id="MAM03863c" name="Phytoceramide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H38NO3RCO">
+      <species metaid="M_MAM03863c" sboTerm="SBO:0000247" id="M_MAM03863c" name="Phytoceramide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H38NO3RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03863c">
+            <rdf:Description rdf:about="#M_MAM03863c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/phcrm_hs"/>
@@ -122676,10 +122728,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01947e" sboTerm="SBO:0000247" id="MAM01947e" name="GD3" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C52H88N3O28RCO">
+      <species metaid="M_MAM01947e" sboTerm="SBO:0000247" id="M_MAM01947e" name="GD3" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C52H88N3O28RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01947e">
+            <rdf:Description rdf:about="#M_MAM01947e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/gd3_hs"/>
@@ -122693,10 +122745,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02015e" sboTerm="SBO:0000247" id="MAM02015e" name="GM3" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C41H72N2O20RCO">
+      <species metaid="M_MAM02015e" sboTerm="SBO:0000247" id="M_MAM02015e" name="GM3" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C41H72N2O20RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02015e">
+            <rdf:Description rdf:about="#M_MAM02015e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/gm3_hs"/>
@@ -122711,10 +122763,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01904e" sboTerm="SBO:0000247" id="MAM01904e" name="GA1" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C44H79N2O22RCO">
+      <species metaid="M_MAM01904e" sboTerm="SBO:0000247" id="M_MAM01904e" name="GA1" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C44H79N2O22RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01904e">
+            <rdf:Description rdf:about="#M_MAM01904e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ga1_hs"/>
@@ -122728,10 +122780,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02009e" sboTerm="SBO:0000247" id="MAM02009e" name="GM1alpha" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C55H95N3O30RCO">
+      <species metaid="M_MAM02009e" sboTerm="SBO:0000247" id="M_MAM02009e" name="GM1alpha" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C55H95N3O30RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02009e">
+            <rdf:Description rdf:about="#M_MAM02009e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/gm1a_hs"/>
@@ -122743,10 +122795,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02014e" sboTerm="SBO:0000247" id="MAM02014e" name="GM2alpha" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C49H85N3O25RCO">
+      <species metaid="M_MAM02014e" sboTerm="SBO:0000247" id="M_MAM02014e" name="GM2alpha" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C49H85N3O25RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02014e">
+            <rdf:Description rdf:about="#M_MAM02014e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/gm2a_hs"/>
@@ -122758,10 +122810,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01947l" sboTerm="SBO:0000247" id="MAM01947l" name="GD3" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C52H88N3O28RCO">
+      <species metaid="M_MAM01947l" sboTerm="SBO:0000247" id="M_MAM01947l" name="GD3" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C52H88N3O28RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01947l">
+            <rdf:Description rdf:about="#M_MAM01947l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/gd3_hs"/>
@@ -122775,10 +122827,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03635e" sboTerm="SBO:0000247" id="MAM03635e" name="Ganglioside Gm1" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C55H95N3O30RCO">
+      <species metaid="M_MAM03635e" sboTerm="SBO:0000247" id="M_MAM03635e" name="Ganglioside Gm1" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C55H95N3O30RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03635e">
+            <rdf:Description rdf:about="#M_MAM03635e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/gm1_hs"/>
@@ -122793,10 +122845,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02010e" sboTerm="SBO:0000247" id="MAM02010e" name="GM1b" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C55H95N3O30RCO">
+      <species metaid="M_MAM02010e" sboTerm="SBO:0000247" id="M_MAM02010e" name="GM1b" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C55H95N3O30RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02010e">
+            <rdf:Description rdf:about="#M_MAM02010e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/gm1b_hs"/>
@@ -122809,10 +122861,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01941e" sboTerm="SBO:0000247" id="MAM01941e" name="GD1a" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C66H111N4O38RCO">
+      <species metaid="M_MAM01941e" sboTerm="SBO:0000247" id="M_MAM01941e" name="GD1a" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C66H111N4O38RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01941e">
+            <rdf:Description rdf:about="#M_MAM01941e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/gd1a_hs"/>
@@ -122826,10 +122878,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01943e" sboTerm="SBO:0000247" id="MAM01943e" name="GD1b" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C66H111N4O38RCO">
+      <species metaid="M_MAM01943e" sboTerm="SBO:0000247" id="M_MAM01943e" name="GD1b" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C66H111N4O38RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01943e">
+            <rdf:Description rdf:about="#M_MAM01943e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/gd1b_hs"/>
@@ -122843,10 +122895,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02030e" sboTerm="SBO:0000247" id="MAM02030e" name="GT1b" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C77H127N5O46RCO">
+      <species metaid="M_MAM02030e" sboTerm="SBO:0000247" id="M_MAM02030e" name="GT1b" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C77H127N5O46RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02030e">
+            <rdf:Description rdf:about="#M_MAM02030e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/gt1b_hs"/>
@@ -122860,10 +122912,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01946e" sboTerm="SBO:0000247" id="MAM01946e" name="GD2" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C60H101N4O33RCO">
+      <species metaid="M_MAM01946e" sboTerm="SBO:0000247" id="M_MAM01946e" name="GD2" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C60H101N4O33RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01946e">
+            <rdf:Description rdf:about="#M_MAM01946e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/gd2_hs"/>
@@ -122877,10 +122929,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01941n" sboTerm="SBO:0000247" id="MAM01941n" name="GD1a" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C66H111N4O38RCO">
+      <species metaid="M_MAM01941n" sboTerm="SBO:0000247" id="M_MAM01941n" name="GD1a" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C66H111N4O38RCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01941n">
+            <rdf:Description rdf:about="#M_MAM01941n">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/gd1a_hs"/>
@@ -122894,10 +122946,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02684n" sboTerm="SBO:0000247" id="MAM02684n" name="PC-LD pool" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H18NO8PR2">
+      <species metaid="M_MAM02684n" sboTerm="SBO:0000247" id="M_MAM02684n" name="PC-LD pool" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H18NO8PR2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02684n">
+            <rdf:Description rdf:about="#M_MAM02684n">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pchol_hs"/>
@@ -122911,10 +122963,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02908n" sboTerm="SBO:0000247" id="MAM02908n" name="SM pool" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H48N2O5PRCO">
+      <species metaid="M_MAM02908n" sboTerm="SBO:0000247" id="M_MAM02908n" name="SM pool" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H48N2O5PRCO">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02908n">
+            <rdf:Description rdf:about="#M_MAM02908n">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/sphmyln_hs"/>
@@ -122929,10 +122981,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03883c" sboTerm="SBO:0000247" id="MAM03883c" name="Phytosphingosine-1-Phosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H39NO6P">
+      <species metaid="M_MAM03883c" sboTerm="SBO:0000247" id="M_MAM03883c" name="Phytosphingosine-1-Phosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H39NO6P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03883c">
+            <rdf:Description rdf:about="#M_MAM03883c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/phsph1p"/>
@@ -122943,10 +122995,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02929n" sboTerm="SBO:0000247" id="MAM02929n" name="sphingosine" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C18H38NO2">
+      <species metaid="M_MAM02929n" sboTerm="SBO:0000247" id="M_MAM02929n" name="sphingosine" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C18H38NO2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02929n">
+            <rdf:Description rdf:about="#M_MAM02929n">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/sphings"/>
@@ -122963,10 +123015,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02930n" sboTerm="SBO:0000247" id="MAM02930n" name="sphingosine-1-phosphate" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H37NO5P">
+      <species metaid="M_MAM02930n" sboTerm="SBO:0000247" id="M_MAM02930n" name="sphingosine-1-phosphate" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H37NO5P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02930n">
+            <rdf:Description rdf:about="#M_MAM02930n">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/sphs1p"/>
@@ -122983,10 +123035,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02927n" sboTerm="SBO:0000247" id="MAM02927n" name="sphinganine" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C18H40NO2">
+      <species metaid="M_MAM02927n" sboTerm="SBO:0000247" id="M_MAM02927n" name="sphinganine" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C18H40NO2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02927n">
+            <rdf:Description rdf:about="#M_MAM02927n">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/sphgn"/>
@@ -123003,10 +123055,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02928n" sboTerm="SBO:0000247" id="MAM02928n" name="sphinganine-1-phosphate" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H39NO5P">
+      <species metaid="M_MAM02928n" sboTerm="SBO:0000247" id="M_MAM02928n" name="sphinganine-1-phosphate" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H39NO5P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02928n">
+            <rdf:Description rdf:about="#M_MAM02928n">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/sph1p"/>
@@ -123021,10 +123073,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02738n" sboTerm="SBO:0000247" id="MAM02738n" name="phosphocholine" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C5H13NO4P">
+      <species metaid="M_MAM02738n" sboTerm="SBO:0000247" id="M_MAM02738n" name="phosphocholine" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C5H13NO4P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02738n">
+            <rdf:Description rdf:about="#M_MAM02738n">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/cholp"/>
@@ -123040,10 +123092,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01592e" sboTerm="SBO:0000247" id="MAM01592e" name="CMP-N-acetylneuraminate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C20H29N4O16P">
+      <species metaid="M_MAM01592e" sboTerm="SBO:0000247" id="M_MAM01592e" name="CMP-N-acetylneuraminate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C20H29N4O16P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01592e">
+            <rdf:Description rdf:about="#M_MAM01592e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/cmpacna"/>
@@ -123057,10 +123109,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03661c" sboTerm="SBO:0000247" id="MAM03661c" name="2-Hydroxyhexadecanal" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C16H32O2">
+      <species metaid="M_MAM03661c" sboTerm="SBO:0000247" id="M_MAM03661c" name="2-Hydroxyhexadecanal" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C16H32O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03661c">
+            <rdf:Description rdf:about="#M_MAM03661c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hhxdcal"/>
@@ -123072,10 +123124,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03197e" sboTerm="SBO:0000247" id="MAM03197e" name="3,4-Dihydroxyphenylethanol" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H10O3">
+      <species metaid="M_MAM03197e" sboTerm="SBO:0000247" id="M_MAM03197e" name="3,4-Dihydroxyphenylethanol" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H10O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03197e">
+            <rdf:Description rdf:about="#M_MAM03197e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/34dhpe"/>
@@ -123087,10 +123139,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01947m" sboTerm="SBO:0000247" id="MAM01947m" name="GD3" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C52H88N3O28RCO">
+      <species metaid="M_MAM01947m" sboTerm="SBO:0000247" id="M_MAM01947m" name="GD3" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C52H88N3O28RCO">
         <annotation>
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+            <rdf:Description rdf:about="#M_MAM01947m">
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@@ -123104,10 +123156,10 @@
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+      <species metaid="M_MAM03970c" sboTerm="SBO:0000247" id="M_MAM03970c" name="biomass" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="X">
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           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03970c">
+            <rdf:Description rdf:about="#M_MAM03970c">
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                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/BIOMASS"/>
@@ -123118,10 +123170,10 @@
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-      <species metaid="MAM00517c" sboTerm="SBO:0000247" id="MAM00517c" name="12-Dehydrocholic acid; 12-Oxodeoxycholic acid; 12oxo-3alpha,7alpha-Dihydroxy-5beta-cholan-24-oic acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H37O5">
+      <species metaid="M_MAM00517c" sboTerm="SBO:0000247" id="M_MAM00517c" name="12-Dehydrocholic acid; 12-Oxodeoxycholic acid; 12oxo-3alpha,7alpha-Dihydroxy-5beta-cholan-24-oic acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H37O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00517c">
+            <rdf:Description rdf:about="#M_MAM00517c">
               <bqbiol:is>
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                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/12dhchol"/>
@@ -123132,10 +123184,10 @@
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-      <species metaid="MAM00517e" sboTerm="SBO:0000247" id="MAM00517e" name="12-Dehydrocholic acid; 12-Oxodeoxycholic acid; 12oxo-3alpha,7alpha-Dihydroxy-5beta-cholan-24-oic acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H37O5">
+      <species metaid="M_MAM00517e" sboTerm="SBO:0000247" id="M_MAM00517e" name="12-Dehydrocholic acid; 12-Oxodeoxycholic acid; 12oxo-3alpha,7alpha-Dihydroxy-5beta-cholan-24-oic acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H37O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00517e">
+            <rdf:Description rdf:about="#M_MAM00517e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/12dhchol"/>
@@ -123146,10 +123198,10 @@
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-      <species metaid="MAM03207c" sboTerm="SBO:0000247" id="MAM03207c" name="3-Dehydrocholic acid; 3oxo-7alpha,12alpha-Dihydroxy-5beta-cholan-24-oic acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H37O5">
+      <species metaid="M_MAM03207c" sboTerm="SBO:0000247" id="M_MAM03207c" name="3-Dehydrocholic acid; 3oxo-7alpha,12alpha-Dihydroxy-5beta-cholan-24-oic acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H37O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03207c">
+            <rdf:Description rdf:about="#M_MAM03207c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/3dhchol"/>
@@ -123160,10 +123212,10 @@
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-      <species metaid="MAM03206c" sboTerm="SBO:0000247" id="MAM03206c" name="3-Dehydrochenodeoxychollyc acid; 7oxo-3alpha-hydroxy-5beta-cholan-24-oic acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H37O4">
+      <species metaid="M_MAM03206c" sboTerm="SBO:0000247" id="M_MAM03206c" name="3-Dehydrochenodeoxychollyc acid; 7oxo-3alpha-hydroxy-5beta-cholan-24-oic acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H37O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03206c">
+            <rdf:Description rdf:about="#M_MAM03206c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/3dhcdchol"/>
@@ -123174,10 +123226,10 @@
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         </annotation>
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-      <species metaid="MAM03206e" sboTerm="SBO:0000247" id="MAM03206e" name="3-Dehydrochenodeoxychollyc acid; 7oxo-3alpha-hydroxy-5beta-cholan-24-oic acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H37O4">
+      <species metaid="M_MAM03206e" sboTerm="SBO:0000247" id="M_MAM03206e" name="3-Dehydrochenodeoxychollyc acid; 7oxo-3alpha-hydroxy-5beta-cholan-24-oic acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H37O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03206e">
+            <rdf:Description rdf:about="#M_MAM03206e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/3dhcdchol"/>
@@ -123188,10 +123240,10 @@
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         </annotation>
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-      <species metaid="MAM03207e" sboTerm="SBO:0000247" id="MAM03207e" name="3-Dehydrocholic acid; 3oxo-7alpha,12alpha-Dihydroxy-5beta-cholan-24-oic acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H37O5">
+      <species metaid="M_MAM03207e" sboTerm="SBO:0000247" id="M_MAM03207e" name="3-Dehydrocholic acid; 3oxo-7alpha,12alpha-Dihydroxy-5beta-cholan-24-oic acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H37O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03207e">
+            <rdf:Description rdf:about="#M_MAM03207e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/3dhchol"/>
@@ -123202,10 +123254,10 @@
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         </annotation>
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-      <species metaid="MAM03208c" sboTerm="SBO:0000247" id="MAM03208c" name="3-dehydro-Deoxycholate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H37O4">
+      <species metaid="M_MAM03208c" sboTerm="SBO:0000247" id="M_MAM03208c" name="3-dehydro-Deoxycholate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H37O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03208c">
+            <rdf:Description rdf:about="#M_MAM03208c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/3dhdchol"/>
@@ -123216,10 +123268,10 @@
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         </annotation>
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-      <species metaid="MAM03208e" sboTerm="SBO:0000247" id="MAM03208e" name="3-dehydro-Deoxycholate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H37O4">
+      <species metaid="M_MAM03208e" sboTerm="SBO:0000247" id="M_MAM03208e" name="3-dehydro-Deoxycholate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H37O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03208e">
+            <rdf:Description rdf:about="#M_MAM03208e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/3dhdchol"/>
@@ -123230,10 +123282,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM03209c" sboTerm="SBO:0000247" id="MAM03209c" name="3-dehydro-Lithocholate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H37O3">
+      <species metaid="M_MAM03209c" sboTerm="SBO:0000247" id="M_MAM03209c" name="3-dehydro-Lithocholate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H37O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03209c">
+            <rdf:Description rdf:about="#M_MAM03209c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/3dhlchol"/>
@@ -123244,10 +123296,10 @@
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         </annotation>
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-      <species metaid="MAM03209e" sboTerm="SBO:0000247" id="MAM03209e" name="3-dehydro-Lithocholate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H37O3">
+      <species metaid="M_MAM03209e" sboTerm="SBO:0000247" id="M_MAM03209e" name="3-dehydro-Lithocholate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H37O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03209e">
+            <rdf:Description rdf:about="#M_MAM03209e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/3dhlchol"/>
@@ -123258,10 +123310,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM03310c" sboTerm="SBO:0000247" id="MAM03310c" name="7-Dehydrochenodeoxycholic acid; 7oxo-3alpha-hydroxy-5beta-cholan-24-oic acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H37O4">
+      <species metaid="M_MAM03310c" sboTerm="SBO:0000247" id="M_MAM03310c" name="7-Dehydrochenodeoxycholic acid; 7oxo-3alpha-hydroxy-5beta-cholan-24-oic acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H37O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03310c">
+            <rdf:Description rdf:about="#M_MAM03310c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/7dhcdchol"/>
@@ -123272,10 +123324,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM03310e" sboTerm="SBO:0000247" id="MAM03310e" name="7-Dehydrochenodeoxycholic acid; 7oxo-3alpha-hydroxy-5beta-cholan-24-oic acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H37O4">
+      <species metaid="M_MAM03310e" sboTerm="SBO:0000247" id="M_MAM03310e" name="7-Dehydrochenodeoxycholic acid; 7oxo-3alpha-hydroxy-5beta-cholan-24-oic acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H37O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03310e">
+            <rdf:Description rdf:about="#M_MAM03310e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/7dhcdchol"/>
@@ -123286,10 +123338,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM03311c" sboTerm="SBO:0000247" id="MAM03311c" name="7-Dehydrocholic acid; 7-Oxodeoxycholic acid; 7oxo-3alpha,12alpha-Dihydroxy-5beta-cholan-24-oic acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H37O5">
+      <species metaid="M_MAM03311c" sboTerm="SBO:0000247" id="M_MAM03311c" name="7-Dehydrocholic acid; 7-Oxodeoxycholic acid; 7oxo-3alpha,12alpha-Dihydroxy-5beta-cholan-24-oic acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H37O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03311c">
+            <rdf:Description rdf:about="#M_MAM03311c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/7dhchol"/>
@@ -123300,10 +123352,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM03311e" sboTerm="SBO:0000247" id="MAM03311e" name="7-Dehydrocholic acid; 7-Oxodeoxycholic acid; 7oxo-3alpha,12alpha-Dihydroxy-5beta-cholan-24-oic acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H37O5">
+      <species metaid="M_MAM03311e" sboTerm="SBO:0000247" id="M_MAM03311e" name="7-Dehydrocholic acid; 7-Oxodeoxycholic acid; 7oxo-3alpha,12alpha-Dihydroxy-5beta-cholan-24-oic acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H37O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03311e">
+            <rdf:Description rdf:about="#M_MAM03311e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/7dhchol"/>
@@ -123314,10 +123366,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03503c" sboTerm="SBO:0000247" id="MAM03503c" name="Cholic acid-24glucuronide, CA-24G" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C30H47O11">
+      <species metaid="M_MAM03503c" sboTerm="SBO:0000247" id="M_MAM03503c" name="Cholic acid-24glucuronide, CA-24G" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C30H47O11">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03503c">
+            <rdf:Description rdf:about="#M_MAM03503c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ca24g"/>
@@ -123328,10 +123380,10 @@
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-      <species metaid="MAM03503r" sboTerm="SBO:0000247" id="MAM03503r" name="Cholic acid-24glucuronide, CA-24G" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C30H47O11">
+      <species metaid="M_MAM03503r" sboTerm="SBO:0000247" id="M_MAM03503r" name="Cholic acid-24glucuronide, CA-24G" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C30H47O11">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03503r">
+            <rdf:Description rdf:about="#M_MAM03503r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ca24g"/>
@@ -123342,10 +123394,10 @@
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         </annotation>
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-      <species metaid="MAM03503e" sboTerm="SBO:0000247" id="MAM03503e" name="Cholic acid-24glucuronide, CA-24G" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C30H47O11">
+      <species metaid="M_MAM03503e" sboTerm="SBO:0000247" id="M_MAM03503e" name="Cholic acid-24glucuronide, CA-24G" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C30H47O11">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03503e">
+            <rdf:Description rdf:about="#M_MAM03503e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ca24g"/>
@@ -123356,10 +123408,10 @@
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         </annotation>
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-      <species metaid="MAM03504c" sboTerm="SBO:0000247" id="MAM03504c" name="Cholic acid 3-sulfate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C24H38O8S">
+      <species metaid="M_MAM03504c" sboTerm="SBO:0000247" id="M_MAM03504c" name="Cholic acid 3-sulfate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C24H38O8S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03504c">
+            <rdf:Description rdf:about="#M_MAM03504c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ca3s"/>
@@ -123370,10 +123422,10 @@
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         </annotation>
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-      <species metaid="MAM03504e" sboTerm="SBO:0000247" id="MAM03504e" name="Cholic acid 3-sulfate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C24H38O8S">
+      <species metaid="M_MAM03504e" sboTerm="SBO:0000247" id="M_MAM03504e" name="Cholic acid 3-sulfate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C24H38O8S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03504e">
+            <rdf:Description rdf:about="#M_MAM03504e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ca3s"/>
@@ -123384,10 +123436,10 @@
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         </annotation>
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-      <species metaid="MAM03508c" sboTerm="SBO:0000247" id="MAM03508c" name="Chenodeoxycholic acid-24glucuronide, CDCA-24G" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C30H47O10">
+      <species metaid="M_MAM03508c" sboTerm="SBO:0000247" id="M_MAM03508c" name="Chenodeoxycholic acid-24glucuronide, CDCA-24G" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C30H47O10">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03508c">
+            <rdf:Description rdf:about="#M_MAM03508c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/cdca24g"/>
@@ -123398,10 +123450,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03508r" sboTerm="SBO:0000247" id="MAM03508r" name="Chenodeoxycholic acid-24glucuronide, CDCA-24G" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C30H47O10">
+      <species metaid="M_MAM03508r" sboTerm="SBO:0000247" id="M_MAM03508r" name="Chenodeoxycholic acid-24glucuronide, CDCA-24G" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C30H47O10">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03508r">
+            <rdf:Description rdf:about="#M_MAM03508r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/cdca24g"/>
@@ -123412,10 +123464,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03508e" sboTerm="SBO:0000247" id="MAM03508e" name="Chenodeoxycholic acid-24glucuronide, CDCA-24G" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C30H47O10">
+      <species metaid="M_MAM03508e" sboTerm="SBO:0000247" id="M_MAM03508e" name="Chenodeoxycholic acid-24glucuronide, CDCA-24G" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C30H47O10">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03508e">
+            <rdf:Description rdf:about="#M_MAM03508e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/cdca24g"/>
@@ -123426,10 +123478,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03509c" sboTerm="SBO:0000247" id="MAM03509c" name="Chenodeoxycholic acid-3glucuronide, CDCA-3G" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C30H47O10">
+      <species metaid="M_MAM03509c" sboTerm="SBO:0000247" id="M_MAM03509c" name="Chenodeoxycholic acid-3glucuronide, CDCA-3G" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C30H47O10">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03509c">
+            <rdf:Description rdf:about="#M_MAM03509c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/cdca3g"/>
@@ -123440,10 +123492,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03509r" sboTerm="SBO:0000247" id="MAM03509r" name="Chenodeoxycholic acid-3glucuronide, CDCA-3G" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C30H47O10">
+      <species metaid="M_MAM03509r" sboTerm="SBO:0000247" id="M_MAM03509r" name="Chenodeoxycholic acid-3glucuronide, CDCA-3G" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C30H47O10">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03509r">
+            <rdf:Description rdf:about="#M_MAM03509r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/cdca3g"/>
@@ -123454,10 +123506,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03509e" sboTerm="SBO:0000247" id="MAM03509e" name="Chenodeoxycholic acid-3glucuronide, CDCA-3G" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C30H47O10">
+      <species metaid="M_MAM03509e" sboTerm="SBO:0000247" id="M_MAM03509e" name="Chenodeoxycholic acid-3glucuronide, CDCA-3G" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C30H47O10">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03509e">
+            <rdf:Description rdf:about="#M_MAM03509e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/cdca3g"/>
@@ -123468,10 +123520,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03685c" sboTerm="SBO:0000247" id="MAM03685c" name="Hyocholic acid; gamma-Muricholate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H39O5">
+      <species metaid="M_MAM03685c" sboTerm="SBO:0000247" id="M_MAM03685c" name="Hyocholic acid; gamma-Muricholate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H39O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03685c">
+            <rdf:Description rdf:about="#M_MAM03685c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hyochol"/>
@@ -123486,10 +123538,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03512c" sboTerm="SBO:0000247" id="MAM03512c" name="Coprostanol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H48O">
+      <species metaid="M_MAM03512c" sboTerm="SBO:0000247" id="M_MAM03512c" name="Coprostanol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H48O">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03512c">
+            <rdf:Description rdf:about="#M_MAM03512c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/coprost"/>
@@ -123500,10 +123552,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03512e" sboTerm="SBO:0000247" id="MAM03512e" name="Coprostanol" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H48O">
+      <species metaid="M_MAM03512e" sboTerm="SBO:0000247" id="M_MAM03512e" name="Coprostanol" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H48O">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03512e">
+            <rdf:Description rdf:about="#M_MAM03512e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/coprost"/>
@@ -123514,10 +123566,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03536c" sboTerm="SBO:0000247" id="MAM03536c" name="Deoxycholic acid-24glucuronide, CDA-24G" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C30H47O10">
+      <species metaid="M_MAM03536c" sboTerm="SBO:0000247" id="M_MAM03536c" name="Deoxycholic acid-24glucuronide, CDA-24G" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C30H47O10">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03536c">
+            <rdf:Description rdf:about="#M_MAM03536c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dca24g"/>
@@ -123528,10 +123580,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03536r" sboTerm="SBO:0000247" id="MAM03536r" name="Deoxycholic acid-24glucuronide, CDA-24G" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C30H47O10">
+      <species metaid="M_MAM03536r" sboTerm="SBO:0000247" id="M_MAM03536r" name="Deoxycholic acid-24glucuronide, CDA-24G" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C30H47O10">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03536r">
+            <rdf:Description rdf:about="#M_MAM03536r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dca24g"/>
@@ -123542,10 +123594,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03536e" sboTerm="SBO:0000247" id="MAM03536e" name="Deoxycholic acid-24glucuronide, CDA-24G" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C30H47O10">
+      <species metaid="M_MAM03536e" sboTerm="SBO:0000247" id="M_MAM03536e" name="Deoxycholic acid-24glucuronide, CDA-24G" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C30H47O10">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03536e">
+            <rdf:Description rdf:about="#M_MAM03536e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dca24g"/>
@@ -123556,10 +123608,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03537c" sboTerm="SBO:0000247" id="MAM03537c" name="Deoxycholic acid-3glucuronide, CDA-3G" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C30H47O10">
+      <species metaid="M_MAM03537c" sboTerm="SBO:0000247" id="M_MAM03537c" name="Deoxycholic acid-3glucuronide, CDA-3G" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C30H47O10">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03537c">
+            <rdf:Description rdf:about="#M_MAM03537c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dca3g"/>
@@ -123571,10 +123623,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM03537r" sboTerm="SBO:0000247" id="MAM03537r" name="Deoxycholic acid-3glucuronide, CDA-3G" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C30H47O10">
+      <species metaid="M_MAM03537r" sboTerm="SBO:0000247" id="M_MAM03537r" name="Deoxycholic acid-3glucuronide, CDA-3G" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C30H47O10">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03537r">
+            <rdf:Description rdf:about="#M_MAM03537r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dca3g"/>
@@ -123586,10 +123638,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03537e" sboTerm="SBO:0000247" id="MAM03537e" name="Deoxycholic acid-3glucuronide, CDA-3G" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C30H47O10">
+      <species metaid="M_MAM03537e" sboTerm="SBO:0000247" id="M_MAM03537e" name="Deoxycholic acid-3glucuronide, CDA-3G" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C30H47O10">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03537e">
+            <rdf:Description rdf:about="#M_MAM03537e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dca3g"/>
@@ -123601,10 +123653,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03538c" sboTerm="SBO:0000247" id="MAM03538c" name="Deoxycholic acid 3-sulfate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C24H38O7S">
+      <species metaid="M_MAM03538c" sboTerm="SBO:0000247" id="M_MAM03538c" name="Deoxycholic acid 3-sulfate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C24H38O7S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03538c">
+            <rdf:Description rdf:about="#M_MAM03538c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dca3s"/>
@@ -123615,10 +123667,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM03538e" sboTerm="SBO:0000247" id="MAM03538e" name="Deoxycholic acid 3-sulfate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C24H38O7S">
+      <species metaid="M_MAM03538e" sboTerm="SBO:0000247" id="M_MAM03538e" name="Deoxycholic acid 3-sulfate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C24H38O7S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03538e">
+            <rdf:Description rdf:about="#M_MAM03538e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dca3s"/>
@@ -123629,10 +123681,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03587c" sboTerm="SBO:0000247" id="MAM03587c" name="Glycocholic acid 3-sulfate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C26H42NO9S">
+      <species metaid="M_MAM03587c" sboTerm="SBO:0000247" id="M_MAM03587c" name="Glycocholic acid 3-sulfate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C26H42NO9S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03587c">
+            <rdf:Description rdf:about="#M_MAM03587c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/gca3s"/>
@@ -123643,10 +123695,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03588c" sboTerm="SBO:0000247" id="MAM03588c" name="Glycochenodeoxycholic acid 3-sulfate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C26H42NO8S">
+      <species metaid="M_MAM03588c" sboTerm="SBO:0000247" id="M_MAM03588c" name="Glycochenodeoxycholic acid 3-sulfate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C26H42NO8S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03588c">
+            <rdf:Description rdf:about="#M_MAM03588c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/gcdca3s"/>
@@ -123657,10 +123709,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03589c" sboTerm="SBO:0000247" id="MAM03589c" name="Glycodeoxycholic acid 3-sulfate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C26H42NO8S">
+      <species metaid="M_MAM03589c" sboTerm="SBO:0000247" id="M_MAM03589c" name="Glycodeoxycholic acid 3-sulfate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C26H42NO8S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03589c">
+            <rdf:Description rdf:about="#M_MAM03589c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/gdca3s"/>
@@ -123671,10 +123723,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03637c" sboTerm="SBO:0000247" id="MAM03637c" name="Glycoursodeoxycholic acid 3-sulfate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C26H42NO8S">
+      <species metaid="M_MAM03637c" sboTerm="SBO:0000247" id="M_MAM03637c" name="Glycoursodeoxycholic acid 3-sulfate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C26H42NO8S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03637c">
+            <rdf:Description rdf:about="#M_MAM03637c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/gudca3s"/>
@@ -123685,10 +123737,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03642c" sboTerm="SBO:0000247" id="MAM03642c" name="Hyocholic acid-24glucuronide, HCA-24G" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C30H47O11">
+      <species metaid="M_MAM03642c" sboTerm="SBO:0000247" id="M_MAM03642c" name="Hyocholic acid-24glucuronide, HCA-24G" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C30H47O11">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03642c">
+            <rdf:Description rdf:about="#M_MAM03642c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hca24g"/>
@@ -123699,10 +123751,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03643c" sboTerm="SBO:0000247" id="MAM03643c" name="Hyocholic acid-6glucuronide, HCA-6G" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C30H47O11">
+      <species metaid="M_MAM03643c" sboTerm="SBO:0000247" id="M_MAM03643c" name="Hyocholic acid-6glucuronide, HCA-6G" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C30H47O11">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03643c">
+            <rdf:Description rdf:about="#M_MAM03643c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hca6g"/>
@@ -123713,10 +123765,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03644c" sboTerm="SBO:0000247" id="MAM03644c" name="Hyodeoxycholic acid-24glucuronide, HDCA-24G" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C30H47O10">
+      <species metaid="M_MAM03644c" sboTerm="SBO:0000247" id="M_MAM03644c" name="Hyodeoxycholic acid-24glucuronide, HDCA-24G" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C30H47O10">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03644c">
+            <rdf:Description rdf:about="#M_MAM03644c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hdca24g"/>
@@ -123727,10 +123779,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03645c" sboTerm="SBO:0000247" id="MAM03645c" name="Hyodeoxycholic acid-6glucuronide, HDCA-6G" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C30H47O10">
+      <species metaid="M_MAM03645c" sboTerm="SBO:0000247" id="M_MAM03645c" name="Hyodeoxycholic acid-6glucuronide, HDCA-6G" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C30H47O10">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03645c">
+            <rdf:Description rdf:about="#M_MAM03645c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hdca6g"/>
@@ -123741,10 +123793,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03691c" sboTerm="SBO:0000247" id="MAM03691c" name="Isochenodeoxycholic acid; 3beta,7alpha-Dihydroxy-5beta-cholanic acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H39O4">
+      <species metaid="M_MAM03691c" sboTerm="SBO:0000247" id="M_MAM03691c" name="Isochenodeoxycholic acid; 3beta,7alpha-Dihydroxy-5beta-cholanic acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H39O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03691c">
+            <rdf:Description rdf:about="#M_MAM03691c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/icdchol"/>
@@ -123755,10 +123807,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03704c" sboTerm="SBO:0000247" id="MAM03704c" name="Isochenodeoxycholic acid; 3beta,7alpha,12alpha-Trihydroxy-5beta-cholanic acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H39O5">
+      <species metaid="M_MAM03704c" sboTerm="SBO:0000247" id="M_MAM03704c" name="Isochenodeoxycholic acid; 3beta,7alpha,12alpha-Trihydroxy-5beta-cholanic acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H39O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03704c">
+            <rdf:Description rdf:about="#M_MAM03704c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/isochol"/>
@@ -123769,10 +123821,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03707c" sboTerm="SBO:0000247" id="MAM03707c" name="Lithocholic acid-24glucuronide, CDCA-24G" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C30H47O9">
+      <species metaid="M_MAM03707c" sboTerm="SBO:0000247" id="M_MAM03707c" name="Lithocholic acid-24glucuronide, CDCA-24G" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C30H47O9">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03707c">
+            <rdf:Description rdf:about="#M_MAM03707c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/lca24g"/>
@@ -123783,10 +123835,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03708c" sboTerm="SBO:0000247" id="MAM03708c" name="Lithocholic acid-3glucuronide, CDCA-3G" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C30H47O9">
+      <species metaid="M_MAM03708c" sboTerm="SBO:0000247" id="M_MAM03708c" name="Lithocholic acid-3glucuronide, CDCA-3G" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C30H47O9">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03708c">
+            <rdf:Description rdf:about="#M_MAM03708c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/lca3g"/>
@@ -123797,10 +123849,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03709c" sboTerm="SBO:0000247" id="MAM03709c" name="Lithocholic acid 3-sulfate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C24H38O6S">
+      <species metaid="M_MAM03709c" sboTerm="SBO:0000247" id="M_MAM03709c" name="Lithocholic acid 3-sulfate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C24H38O6S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03709c">
+            <rdf:Description rdf:about="#M_MAM03709c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/lca3s"/>
@@ -123811,10 +123863,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03962c" sboTerm="SBO:0000247" id="MAM03962c" name="Taurocholic acid 3-sulfate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C26H44NO10S2">
+      <species metaid="M_MAM03962c" sboTerm="SBO:0000247" id="M_MAM03962c" name="Taurocholic acid 3-sulfate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C26H44NO10S2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03962c">
+            <rdf:Description rdf:about="#M_MAM03962c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/tca3s"/>
@@ -123825,10 +123877,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03963c" sboTerm="SBO:0000247" id="MAM03963c" name="Taurochenodeoxycholic acid 3-sulfate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C26H44NO9S2">
+      <species metaid="M_MAM03963c" sboTerm="SBO:0000247" id="M_MAM03963c" name="Taurochenodeoxycholic acid 3-sulfate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C26H44NO9S2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03963c">
+            <rdf:Description rdf:about="#M_MAM03963c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/tcdca3s"/>
@@ -123839,10 +123891,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03965c" sboTerm="SBO:0000247" id="MAM03965c" name="Taurodeoxycholic acid 3-sulfate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C26H43NO9S2">
+      <species metaid="M_MAM03965c" sboTerm="SBO:0000247" id="M_MAM03965c" name="Taurodeoxycholic acid 3-sulfate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C26H43NO9S2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03965c">
+            <rdf:Description rdf:about="#M_MAM03965c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/tdca3s"/>
@@ -123853,10 +123905,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03996c" sboTerm="SBO:0000247" id="MAM03996c" name="Taurohyocholic acid; N-(3alpha,6alpha,7alpha-Trihydroxy-5beta-cholan-24-oyl)taurine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C26H44NO7S">
+      <species metaid="M_MAM03996c" sboTerm="SBO:0000247" id="M_MAM03996c" name="Taurohyocholic acid; N-(3alpha,6alpha,7alpha-Trihydroxy-5beta-cholan-24-oyl)taurine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C26H44NO7S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03996c">
+            <rdf:Description rdf:about="#M_MAM03996c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/thyochol"/>
@@ -123871,10 +123923,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM04042c" sboTerm="SBO:0000247" id="MAM04042c" name="Tauroursodeoxycholic acid 3-sulfate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C26H44NO9S2">
+      <species metaid="M_MAM04042c" sboTerm="SBO:0000247" id="M_MAM04042c" name="Tauroursodeoxycholic acid 3-sulfate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C26H44NO9S2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM04042c">
+            <rdf:Description rdf:about="#M_MAM04042c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/tudca3s"/>
@@ -123885,10 +123937,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM04057c" sboTerm="SBO:0000247" id="MAM04057c" name="Ursocholic acid; 3alpha,7beta,12alpha-Trihydroxy-5beta-cholan-24-oic acid; 3alpha,7beta,12alpha-Trihydroxy-5beta-cholanic acid; 7beta-Hydroxyisocholic acid; 7-Epicholic acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H39O5">
+      <species metaid="M_MAM04057c" sboTerm="SBO:0000247" id="M_MAM04057c" name="Ursocholic acid; 3alpha,7beta,12alpha-Trihydroxy-5beta-cholan-24-oic acid; 3alpha,7beta,12alpha-Trihydroxy-5beta-cholanic acid; 7beta-Hydroxyisocholic acid; 7-Epicholic acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H39O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM04057c">
+            <rdf:Description rdf:about="#M_MAM04057c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/uchol"/>
@@ -123899,10 +123951,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM04058c" sboTerm="SBO:0000247" id="MAM04058c" name="Ursodeoxycholic acid 3-sulfate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C24H38O7S">
+      <species metaid="M_MAM04058c" sboTerm="SBO:0000247" id="M_MAM04058c" name="Ursodeoxycholic acid 3-sulfate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C24H38O7S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM04058c">
+            <rdf:Description rdf:about="#M_MAM04058c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/udca3s"/>
@@ -123913,10 +123965,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03587e" sboTerm="SBO:0000247" id="MAM03587e" name="Glycocholic acid 3-sulfate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C26H42NO9S">
+      <species metaid="M_MAM03587e" sboTerm="SBO:0000247" id="M_MAM03587e" name="Glycocholic acid 3-sulfate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C26H42NO9S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03587e">
+            <rdf:Description rdf:about="#M_MAM03587e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/gca3s"/>
@@ -123927,10 +123979,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03588e" sboTerm="SBO:0000247" id="MAM03588e" name="Glycochenodeoxycholic acid 3-sulfate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C26H42NO8S">
+      <species metaid="M_MAM03588e" sboTerm="SBO:0000247" id="M_MAM03588e" name="Glycochenodeoxycholic acid 3-sulfate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C26H42NO8S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03588e">
+            <rdf:Description rdf:about="#M_MAM03588e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/gcdca3s"/>
@@ -123941,10 +123993,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03589e" sboTerm="SBO:0000247" id="MAM03589e" name="Glycodeoxycholic acid 3-sulfate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C26H42NO8S">
+      <species metaid="M_MAM03589e" sboTerm="SBO:0000247" id="M_MAM03589e" name="Glycodeoxycholic acid 3-sulfate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C26H42NO8S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03589e">
+            <rdf:Description rdf:about="#M_MAM03589e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/gdca3s"/>
@@ -123955,10 +124007,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03637e" sboTerm="SBO:0000247" id="MAM03637e" name="Glycoursodeoxycholic acid 3-sulfate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C26H42NO8S">
+      <species metaid="M_MAM03637e" sboTerm="SBO:0000247" id="M_MAM03637e" name="Glycoursodeoxycholic acid 3-sulfate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C26H42NO8S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03637e">
+            <rdf:Description rdf:about="#M_MAM03637e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/gudca3s"/>
@@ -123969,10 +124021,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03642e" sboTerm="SBO:0000247" id="MAM03642e" name="Hyocholic acid-24glucuronide, HCA-24G" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C30H47O11">
+      <species metaid="M_MAM03642e" sboTerm="SBO:0000247" id="M_MAM03642e" name="Hyocholic acid-24glucuronide, HCA-24G" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C30H47O11">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03642e">
+            <rdf:Description rdf:about="#M_MAM03642e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hca24g"/>
@@ -123983,10 +124035,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03643e" sboTerm="SBO:0000247" id="MAM03643e" name="Hyocholic acid-6glucuronide, HCA-6G" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C30H47O11">
+      <species metaid="M_MAM03643e" sboTerm="SBO:0000247" id="M_MAM03643e" name="Hyocholic acid-6glucuronide, HCA-6G" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C30H47O11">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03643e">
+            <rdf:Description rdf:about="#M_MAM03643e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hca6g"/>
@@ -123997,10 +124049,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03644e" sboTerm="SBO:0000247" id="MAM03644e" name="Hyodeoxycholic acid-24glucuronide, HDCA-24G" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C30H47O10">
+      <species metaid="M_MAM03644e" sboTerm="SBO:0000247" id="M_MAM03644e" name="Hyodeoxycholic acid-24glucuronide, HDCA-24G" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C30H47O10">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03644e">
+            <rdf:Description rdf:about="#M_MAM03644e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hdca24g"/>
@@ -124011,10 +124063,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03645e" sboTerm="SBO:0000247" id="MAM03645e" name="Hyodeoxycholic acid-6glucuronide, HDCA-6G" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C30H47O10">
+      <species metaid="M_MAM03645e" sboTerm="SBO:0000247" id="M_MAM03645e" name="Hyodeoxycholic acid-6glucuronide, HDCA-6G" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C30H47O10">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03645e">
+            <rdf:Description rdf:about="#M_MAM03645e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hdca6g"/>
@@ -124025,10 +124077,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03685e" sboTerm="SBO:0000247" id="MAM03685e" name="Hyocholic acid; gamma-Muricholate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H39O5">
+      <species metaid="M_MAM03685e" sboTerm="SBO:0000247" id="M_MAM03685e" name="Hyocholic acid; gamma-Muricholate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H39O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03685e">
+            <rdf:Description rdf:about="#M_MAM03685e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hyochol"/>
@@ -124043,10 +124095,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03691e" sboTerm="SBO:0000247" id="MAM03691e" name="Isochenodeoxycholic acid; 3beta,7alpha-Dihydroxy-5beta-cholanic acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H39O4">
+      <species metaid="M_MAM03691e" sboTerm="SBO:0000247" id="M_MAM03691e" name="Isochenodeoxycholic acid; 3beta,7alpha-Dihydroxy-5beta-cholanic acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H39O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03691e">
+            <rdf:Description rdf:about="#M_MAM03691e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/icdchol"/>
@@ -124057,10 +124109,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03704e" sboTerm="SBO:0000247" id="MAM03704e" name="Isochenodeoxycholic acid; 3beta,7alpha,12alpha-Trihydroxy-5beta-cholanic acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H39O5">
+      <species metaid="M_MAM03704e" sboTerm="SBO:0000247" id="M_MAM03704e" name="Isochenodeoxycholic acid; 3beta,7alpha,12alpha-Trihydroxy-5beta-cholanic acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H39O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03704e">
+            <rdf:Description rdf:about="#M_MAM03704e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/isochol"/>
@@ -124071,10 +124123,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03707e" sboTerm="SBO:0000247" id="MAM03707e" name="Lithocholic acid-24glucuronide, CDCA-24G" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C30H47O9">
+      <species metaid="M_MAM03707e" sboTerm="SBO:0000247" id="M_MAM03707e" name="Lithocholic acid-24glucuronide, CDCA-24G" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C30H47O9">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03707e">
+            <rdf:Description rdf:about="#M_MAM03707e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/lca24g"/>
@@ -124085,10 +124137,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03708e" sboTerm="SBO:0000247" id="MAM03708e" name="Lithocholic acid-3glucuronide, CDCA-3G" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C30H47O9">
+      <species metaid="M_MAM03708e" sboTerm="SBO:0000247" id="M_MAM03708e" name="Lithocholic acid-3glucuronide, CDCA-3G" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C30H47O9">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03708e">
+            <rdf:Description rdf:about="#M_MAM03708e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/lca3g"/>
@@ -124099,10 +124151,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03709e" sboTerm="SBO:0000247" id="MAM03709e" name="Lithocholic acid 3-sulfate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C24H38O6S">
+      <species metaid="M_MAM03709e" sboTerm="SBO:0000247" id="M_MAM03709e" name="Lithocholic acid 3-sulfate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C24H38O6S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03709e">
+            <rdf:Description rdf:about="#M_MAM03709e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/lca3s"/>
@@ -124113,10 +124165,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03962e" sboTerm="SBO:0000247" id="MAM03962e" name="Taurocholic acid 3-sulfate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C26H44NO10S2">
+      <species metaid="M_MAM03962e" sboTerm="SBO:0000247" id="M_MAM03962e" name="Taurocholic acid 3-sulfate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C26H44NO10S2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03962e">
+            <rdf:Description rdf:about="#M_MAM03962e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/tca3s"/>
@@ -124127,10 +124179,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03963e" sboTerm="SBO:0000247" id="MAM03963e" name="Taurochenodeoxycholic acid 3-sulfate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C26H44NO9S2">
+      <species metaid="M_MAM03963e" sboTerm="SBO:0000247" id="M_MAM03963e" name="Taurochenodeoxycholic acid 3-sulfate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C26H44NO9S2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03963e">
+            <rdf:Description rdf:about="#M_MAM03963e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/tcdca3s"/>
@@ -124141,10 +124193,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03965e" sboTerm="SBO:0000247" id="MAM03965e" name="Taurodeoxycholic acid 3-sulfate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C26H43NO9S2">
+      <species metaid="M_MAM03965e" sboTerm="SBO:0000247" id="M_MAM03965e" name="Taurodeoxycholic acid 3-sulfate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C26H43NO9S2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03965e">
+            <rdf:Description rdf:about="#M_MAM03965e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/tdca3s"/>
@@ -124155,10 +124207,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03996e" sboTerm="SBO:0000247" id="MAM03996e" name="Taurohyocholic acid; N-(3alpha,6alpha,7alpha-Trihydroxy-5beta-cholan-24-oyl)taurine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C26H44NO7S">
+      <species metaid="M_MAM03996e" sboTerm="SBO:0000247" id="M_MAM03996e" name="Taurohyocholic acid; N-(3alpha,6alpha,7alpha-Trihydroxy-5beta-cholan-24-oyl)taurine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C26H44NO7S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03996e">
+            <rdf:Description rdf:about="#M_MAM03996e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/thyochol"/>
@@ -124173,10 +124225,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM04042e" sboTerm="SBO:0000247" id="MAM04042e" name="Tauroursodeoxycholic acid 3-sulfate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C26H44NO9S2">
+      <species metaid="M_MAM04042e" sboTerm="SBO:0000247" id="M_MAM04042e" name="Tauroursodeoxycholic acid 3-sulfate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C26H44NO9S2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM04042e">
+            <rdf:Description rdf:about="#M_MAM04042e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/tudca3s"/>
@@ -124187,10 +124239,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM04057e" sboTerm="SBO:0000247" id="MAM04057e" name="Ursocholic acid; 3alpha,7beta,12alpha-Trihydroxy-5beta-cholan-24-oic acid; 3alpha,7beta,12alpha-Trihydroxy-5beta-cholanic acid; 7beta-Hydroxyisocholic acid; 7-Epicholic acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H39O5">
+      <species metaid="M_MAM04057e" sboTerm="SBO:0000247" id="M_MAM04057e" name="Ursocholic acid; 3alpha,7beta,12alpha-Trihydroxy-5beta-cholan-24-oic acid; 3alpha,7beta,12alpha-Trihydroxy-5beta-cholanic acid; 7beta-Hydroxyisocholic acid; 7-Epicholic acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H39O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM04057e">
+            <rdf:Description rdf:about="#M_MAM04057e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/uchol"/>
@@ -124201,10 +124253,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM04058e" sboTerm="SBO:0000247" id="MAM04058e" name="Ursodeoxycholic acid 3-sulfate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C24H38O7S">
+      <species metaid="M_MAM04058e" sboTerm="SBO:0000247" id="M_MAM04058e" name="Ursodeoxycholic acid 3-sulfate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C24H38O7S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM04058e">
+            <rdf:Description rdf:about="#M_MAM04058e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/udca3s"/>
@@ -124215,10 +124267,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03685r" sboTerm="SBO:0000247" id="MAM03685r" name="Hyocholic acid; gamma-Muricholate" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H39O5">
+      <species metaid="M_MAM03685r" sboTerm="SBO:0000247" id="M_MAM03685r" name="Hyocholic acid; gamma-Muricholate" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H39O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03685r">
+            <rdf:Description rdf:about="#M_MAM03685r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hyochol"/>
@@ -124233,10 +124285,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03642r" sboTerm="SBO:0000247" id="MAM03642r" name="Hyocholic acid-24glucuronide, HCA-24G" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C30H47O11">
+      <species metaid="M_MAM03642r" sboTerm="SBO:0000247" id="M_MAM03642r" name="Hyocholic acid-24glucuronide, HCA-24G" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C30H47O11">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03642r">
+            <rdf:Description rdf:about="#M_MAM03642r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hca24g"/>
@@ -124247,10 +124299,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03643r" sboTerm="SBO:0000247" id="MAM03643r" name="Hyocholic acid-6glucuronide, HCA-6G" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C30H47O11">
+      <species metaid="M_MAM03643r" sboTerm="SBO:0000247" id="M_MAM03643r" name="Hyocholic acid-6glucuronide, HCA-6G" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C30H47O11">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03643r">
+            <rdf:Description rdf:about="#M_MAM03643r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hca6g"/>
@@ -124261,10 +124313,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02155r" sboTerm="SBO:0000247" id="MAM02155r" name="hyodeoxycholate" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C24H40O4">
+      <species metaid="M_MAM02155r" sboTerm="SBO:0000247" id="M_MAM02155r" name="hyodeoxycholate" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C24H40O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02155r">
+            <rdf:Description rdf:about="#M_MAM02155r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C15517"/>
@@ -124277,10 +124329,10 @@
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-      <species metaid="MAM03644r" sboTerm="SBO:0000247" id="MAM03644r" name="Hyodeoxycholic acid-24glucuronide, HDCA-24G" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C30H47O10">
+      <species metaid="M_MAM03644r" sboTerm="SBO:0000247" id="M_MAM03644r" name="Hyodeoxycholic acid-24glucuronide, HDCA-24G" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C30H47O10">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03644r">
+            <rdf:Description rdf:about="#M_MAM03644r">
               <bqbiol:is>
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                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hdca24g"/>
@@ -124291,10 +124343,10 @@
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-      <species metaid="MAM03645r" sboTerm="SBO:0000247" id="MAM03645r" name="Hyodeoxycholic acid-6glucuronide, HDCA-6G" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C30H47O10">
+      <species metaid="M_MAM03645r" sboTerm="SBO:0000247" id="M_MAM03645r" name="Hyodeoxycholic acid-6glucuronide, HDCA-6G" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C30H47O10">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03645r">
+            <rdf:Description rdf:about="#M_MAM03645r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/hdca6g"/>
@@ -124305,10 +124357,10 @@
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-      <species metaid="MAM03707r" sboTerm="SBO:0000247" id="MAM03707r" name="Lithocholic acid-24glucuronide, CDCA-24G" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C30H47O9">
+      <species metaid="M_MAM03707r" sboTerm="SBO:0000247" id="M_MAM03707r" name="Lithocholic acid-24glucuronide, CDCA-24G" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C30H47O9">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03707r">
+            <rdf:Description rdf:about="#M_MAM03707r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/lca24g"/>
@@ -124319,10 +124371,10 @@
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-      <species metaid="MAM03708r" sboTerm="SBO:0000247" id="MAM03708r" name="Lithocholic acid-3glucuronide, CDCA-3G" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C30H47O9">
+      <species metaid="M_MAM03708r" sboTerm="SBO:0000247" id="M_MAM03708r" name="Lithocholic acid-3glucuronide, CDCA-3G" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C30H47O9">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03708r">
+            <rdf:Description rdf:about="#M_MAM03708r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/lca3g"/>
@@ -124333,10 +124385,10 @@
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-      <species metaid="MAM03959r" sboTerm="SBO:0000247" id="MAM03959r" name="Tacrolimus" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C44H69NO12">
+      <species metaid="M_MAM03959r" sboTerm="SBO:0000247" id="M_MAM03959r" name="Tacrolimus" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C44H69NO12">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03959r">
+            <rdf:Description rdf:about="#M_MAM03959r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/tacr"/>
@@ -124347,10 +124399,10 @@
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-      <species metaid="MAM01817r" sboTerm="SBO:0000247" id="MAM01817r" name="12-HT or M-VI, 12-hydroxy tacrolimus" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C44H69NO13">
+      <species metaid="M_MAM01817r" sboTerm="SBO:0000247" id="M_MAM01817r" name="12-HT or M-VI, 12-hydroxy tacrolimus" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C44H69NO13">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01817r">
+            <rdf:Description rdf:about="#M_MAM01817r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/12htacr"/>
@@ -124361,10 +124413,10 @@
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         </annotation>
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-      <species metaid="MAM01817c" sboTerm="SBO:0000247" id="MAM01817c" name="12-HT or M-VI, 12-hydroxy tacrolimus" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C44H69NO13">
+      <species metaid="M_MAM01817c" sboTerm="SBO:0000247" id="M_MAM01817c" name="12-HT or M-VI, 12-hydroxy tacrolimus" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C44H69NO13">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01817c">
+            <rdf:Description rdf:about="#M_MAM01817c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/12htacr"/>
@@ -124375,10 +124427,10 @@
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         </annotation>
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-      <species metaid="MAM01817e" sboTerm="SBO:0000247" id="MAM01817e" name="12-HT or M-VI, 12-hydroxy tacrolimus" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C44H69NO13">
+      <species metaid="M_MAM01817e" sboTerm="SBO:0000247" id="M_MAM01817e" name="12-HT or M-VI, 12-hydroxy tacrolimus" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C44H69NO13">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01817e">
+            <rdf:Description rdf:about="#M_MAM01817e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/12htacr"/>
@@ -124389,10 +124441,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM01875r" sboTerm="SBO:0000247" id="MAM01875r" name="13-O-desmethyl tacrolimus, 13-DMT or M-I" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C43H67NO12">
+      <species metaid="M_MAM01875r" sboTerm="SBO:0000247" id="M_MAM01875r" name="13-O-desmethyl tacrolimus, 13-DMT or M-I" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C43H67NO12">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01875r">
+            <rdf:Description rdf:about="#M_MAM01875r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/13dmt"/>
@@ -124403,10 +124455,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01818r" sboTerm="SBO:0000247" id="MAM01818r" name="13,31-O-Didesmethyl-tacrolimus" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C42H65NO12">
+      <species metaid="M_MAM01818r" sboTerm="SBO:0000247" id="M_MAM01818r" name="13,31-O-Didesmethyl-tacrolimus" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C42H65NO12">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01818r">
+            <rdf:Description rdf:about="#M_MAM01818r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/1331tacr"/>
@@ -124417,10 +124469,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03196r" sboTerm="SBO:0000247" id="MAM03196r" name="31-DMT or M-II, 31-O-desmethyl tacrolimus" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C43H67NO12">
+      <species metaid="M_MAM03196r" sboTerm="SBO:0000247" id="M_MAM03196r" name="31-DMT or M-II, 31-O-desmethyl tacrolimus" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C43H67NO12">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03196r">
+            <rdf:Description rdf:about="#M_MAM03196r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/31dmt"/>
@@ -124431,10 +124483,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01818c" sboTerm="SBO:0000247" id="MAM01818c" name="13,31-O-Didesmethyl-tacrolimus" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C42H65NO12">
+      <species metaid="M_MAM01818c" sboTerm="SBO:0000247" id="M_MAM01818c" name="13,31-O-Didesmethyl-tacrolimus" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C42H65NO12">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01818c">
+            <rdf:Description rdf:about="#M_MAM01818c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/1331tacr"/>
@@ -124445,10 +124497,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01818e" sboTerm="SBO:0000247" id="MAM01818e" name="13,31-O-Didesmethyl-tacrolimus" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C42H65NO12">
+      <species metaid="M_MAM01818e" sboTerm="SBO:0000247" id="M_MAM01818e" name="13,31-O-Didesmethyl-tacrolimus" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C42H65NO12">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01818e">
+            <rdf:Description rdf:about="#M_MAM01818e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/1331tacr"/>
@@ -124459,10 +124511,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01875c" sboTerm="SBO:0000247" id="MAM01875c" name="13-O-desmethyl tacrolimus, 13-DMT or M-I" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C43H67NO12">
+      <species metaid="M_MAM01875c" sboTerm="SBO:0000247" id="M_MAM01875c" name="13-O-desmethyl tacrolimus, 13-DMT or M-I" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C43H67NO12">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01875c">
+            <rdf:Description rdf:about="#M_MAM01875c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/13dmt"/>
@@ -124473,10 +124525,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01875e" sboTerm="SBO:0000247" id="MAM01875e" name="13-O-desmethyl tacrolimus, 13-DMT or M-I" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C43H67NO12">
+      <species metaid="M_MAM01875e" sboTerm="SBO:0000247" id="M_MAM01875e" name="13-O-desmethyl tacrolimus, 13-DMT or M-I" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C43H67NO12">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01875e">
+            <rdf:Description rdf:about="#M_MAM01875e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/13dmt"/>
@@ -124487,10 +124539,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03278r" sboTerm="SBO:0000247" id="MAM03278r" name="4-OH-midazolam" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H13ClFN3O">
+      <species metaid="M_MAM03278r" sboTerm="SBO:0000247" id="M_MAM03278r" name="4-OH-midazolam" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H13ClFN3O">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03278r">
+            <rdf:Description rdf:about="#M_MAM03278r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/4ohmdz"/>
@@ -124501,10 +124553,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01888r" sboTerm="SBO:0000247" id="MAM01888r" name="1,4-Dihydroxy-midazolam" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H13ClFN3O2">
+      <species metaid="M_MAM01888r" sboTerm="SBO:0000247" id="M_MAM01888r" name="1,4-Dihydroxy-midazolam" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H13ClFN3O2">
         <annotation>
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-            <rdf:Description rdf:about="#MAM01888r">
+            <rdf:Description rdf:about="#M_MAM01888r">
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@@ -124515,10 +124567,10 @@
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+      <species metaid="M_MAM01903r" sboTerm="SBO:0000247" id="M_MAM01903r" name="1&apos;-OH-midazolam" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H13ClFN3O">
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+            <rdf:Description rdf:about="#M_MAM01903r">
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@@ -124529,10 +124581,10 @@
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+      <species metaid="M_MAM01888c" sboTerm="SBO:0000247" id="M_MAM01888c" name="1,4-Dihydroxy-midazolam" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H13ClFN3O2">
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-            <rdf:Description rdf:about="#MAM01888c">
+            <rdf:Description rdf:about="#M_MAM01888c">
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@@ -124543,10 +124595,10 @@
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+      <species metaid="M_MAM01888e" sboTerm="SBO:0000247" id="M_MAM01888e" name="1,4-Dihydroxy-midazolam" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H13ClFN3O2">
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-            <rdf:Description rdf:about="#MAM01888e">
+            <rdf:Description rdf:about="#M_MAM01888e">
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@@ -124557,10 +124609,10 @@
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+      <species metaid="M_MAM01891r" sboTerm="SBO:0000247" id="M_MAM01891r" name="15-DMT or M-III, 15-O-desmethyl tacrolimus" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C43H67NO12">
         <annotation>
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-            <rdf:Description rdf:about="#MAM01891r">
+            <rdf:Description rdf:about="#M_MAM01891r">
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@@ -124571,10 +124623,10 @@
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+      <species metaid="M_MAM01889r" sboTerm="SBO:0000247" id="M_MAM01889r" name="13,15-O-didesmethyl tacrolimus" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C42H65NO12">
         <annotation>
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-            <rdf:Description rdf:about="#MAM01889r">
+            <rdf:Description rdf:about="#M_MAM01889r">
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@@ -124585,10 +124637,10 @@
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+      <species metaid="M_MAM01889c" sboTerm="SBO:0000247" id="M_MAM01889c" name="13,15-O-didesmethyl tacrolimus" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C42H65NO12">
         <annotation>
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-            <rdf:Description rdf:about="#MAM01889c">
+            <rdf:Description rdf:about="#M_MAM01889c">
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@@ -124599,10 +124651,10 @@
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+      <species metaid="M_MAM01889e" sboTerm="SBO:0000247" id="M_MAM01889e" name="13,15-O-didesmethyl tacrolimus" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C42H65NO12">
         <annotation>
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-            <rdf:Description rdf:about="#MAM01889e">
+            <rdf:Description rdf:about="#M_MAM01889e">
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@@ -124613,10 +124665,10 @@
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+      <species metaid="M_MAM01890r" sboTerm="SBO:0000247" id="M_MAM01890r" name="15,31-O-Didesmethyl-tacrolimus" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C42H65NO12">
         <annotation>
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-            <rdf:Description rdf:about="#MAM01890r">
+            <rdf:Description rdf:about="#M_MAM01890r">
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@@ -124627,10 +124679,10 @@
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+      <species metaid="M_MAM01890c" sboTerm="SBO:0000247" id="M_MAM01890c" name="15,31-O-Didesmethyl-tacrolimus" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C42H65NO12">
         <annotation>
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-            <rdf:Description rdf:about="#MAM01890c">
+            <rdf:Description rdf:about="#M_MAM01890c">
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@@ -124641,10 +124693,10 @@
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+      <species metaid="M_MAM01890e" sboTerm="SBO:0000247" id="M_MAM01890e" name="15,31-O-Didesmethyl-tacrolimus" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C42H65NO12">
         <annotation>
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-            <rdf:Description rdf:about="#MAM01890e">
+            <rdf:Description rdf:about="#M_MAM01890e">
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@@ -124655,10 +124707,10 @@
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+      <species metaid="M_MAM01891c" sboTerm="SBO:0000247" id="M_MAM01891c" name="15-DMT or M-III, 15-O-desmethyl tacrolimus" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C43H67NO12">
         <annotation>
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-            <rdf:Description rdf:about="#MAM01891c">
+            <rdf:Description rdf:about="#M_MAM01891c">
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@@ -124669,10 +124721,10 @@
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-      <species metaid="MAM01891e" sboTerm="SBO:0000247" id="MAM01891e" name="15-DMT or M-III, 15-O-desmethyl tacrolimus" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C43H67NO12">
+      <species metaid="M_MAM01891e" sboTerm="SBO:0000247" id="M_MAM01891e" name="15-DMT or M-III, 15-O-desmethyl tacrolimus" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C43H67NO12">
         <annotation>
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-            <rdf:Description rdf:about="#MAM01891e">
+            <rdf:Description rdf:about="#M_MAM01891e">
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@@ -124683,10 +124735,10 @@
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-      <species metaid="MAM01901c" sboTerm="SBO:0000247" id="MAM01901c" name="1-hydroxy S-ibuprofen-glucuronide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C19H25O9">
+      <species metaid="M_MAM01901c" sboTerm="SBO:0000247" id="M_MAM01901c" name="1-hydroxy S-ibuprofen-glucuronide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C19H25O9">
         <annotation>
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-            <rdf:Description rdf:about="#MAM01901c">
+            <rdf:Description rdf:about="#M_MAM01901c">
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                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/1hibupglu_S"/>
@@ -124696,10 +124748,10 @@
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+      <species metaid="M_MAM01901e" sboTerm="SBO:0000247" id="M_MAM01901e" name="1-hydroxy S-ibuprofen-glucuronide" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C19H25O9">
         <annotation>
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-            <rdf:Description rdf:about="#MAM01901e">
+            <rdf:Description rdf:about="#M_MAM01901e">
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@@ -124709,10 +124761,10 @@
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+      <species metaid="M_MAM01894r" sboTerm="SBO:0000247" id="M_MAM01894r" name="1-hydroxy S-ibuprofen" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C13H17O3">
         <annotation>
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-            <rdf:Description rdf:about="#MAM01894r">
+            <rdf:Description rdf:about="#M_MAM01894r">
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@@ -124722,10 +124774,10 @@
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-      <species metaid="MAM01901r" sboTerm="SBO:0000247" id="MAM01901r" name="1-hydroxy S-ibuprofen-glucuronide" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C19H25O9">
+      <species metaid="M_MAM01901r" sboTerm="SBO:0000247" id="M_MAM01901r" name="1-hydroxy S-ibuprofen-glucuronide" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C19H25O9">
         <annotation>
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-            <rdf:Description rdf:about="#MAM01901r">
+            <rdf:Description rdf:about="#M_MAM01901r">
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@@ -124735,10 +124787,10 @@
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+      <species metaid="M_MAM01894c" sboTerm="SBO:0000247" id="M_MAM01894c" name="1-hydroxy S-ibuprofen" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C13H17O3">
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-            <rdf:Description rdf:about="#MAM01894c">
+            <rdf:Description rdf:about="#M_MAM01894c">
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@@ -124748,10 +124800,10 @@
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+      <species metaid="M_MAM01894e" sboTerm="SBO:0000247" id="M_MAM01894e" name="1-hydroxy S-ibuprofen" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C13H17O3">
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           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01894e">
+            <rdf:Description rdf:about="#M_MAM01894e">
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@@ -124761,10 +124813,10 @@
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+      <species metaid="M_MAM01902r" sboTerm="SBO:0000247" id="M_MAM01902r" name="1&apos;-OH-midazolam-glucuronide" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H20ClFN3O7">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01902r">
+            <rdf:Description rdf:about="#M_MAM01902r">
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@@ -124775,10 +124827,10 @@
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+      <species metaid="M_MAM01902e" sboTerm="SBO:0000247" id="M_MAM01902e" name="1&apos;-OH-midazolam-glucuronide" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H20ClFN3O7">
         <annotation>
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-            <rdf:Description rdf:about="#MAM01902e">
+            <rdf:Description rdf:about="#M_MAM01902e">
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@@ -124789,10 +124841,10 @@
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+      <species metaid="M_MAM01902c" sboTerm="SBO:0000247" id="M_MAM01902c" name="1&apos;-OH-midazolam-glucuronide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H20ClFN3O7">
         <annotation>
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-            <rdf:Description rdf:about="#MAM01902c">
+            <rdf:Description rdf:about="#M_MAM01902c">
               <bqbiol:is>
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                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/1hmdgluc"/>
@@ -124803,10 +124855,10 @@
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-      <species metaid="MAM03756r" sboTerm="SBO:0000247" id="MAM03756r" name="Midazolam" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H13ClFN3">
+      <species metaid="M_MAM03756r" sboTerm="SBO:0000247" id="M_MAM03756r" name="Midazolam" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H13ClFN3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03756r">
+            <rdf:Description rdf:about="#M_MAM03756r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/mdz"/>
@@ -124817,10 +124869,10 @@
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-      <species metaid="MAM01903c" sboTerm="SBO:0000247" id="MAM01903c" name="1&apos;-OH-midazolam" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H13ClFN3O">
+      <species metaid="M_MAM01903c" sboTerm="SBO:0000247" id="M_MAM01903c" name="1&apos;-OH-midazolam" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H13ClFN3O">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01903c">
+            <rdf:Description rdf:about="#M_MAM01903c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/1ohmdz"/>
@@ -124831,10 +124883,10 @@
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-      <species metaid="MAM01903e" sboTerm="SBO:0000247" id="MAM01903e" name="1&apos;-OH-midazolam" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H13ClFN3O">
+      <species metaid="M_MAM01903e" sboTerm="SBO:0000247" id="M_MAM01903e" name="1&apos;-OH-midazolam" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H13ClFN3O">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01903e">
+            <rdf:Description rdf:about="#M_MAM01903e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/1ohmdz"/>
@@ -124845,10 +124897,10 @@
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-      <species metaid="MAM03177c" sboTerm="SBO:0000247" id="MAM03177c" name="2-hydroxy-atorvastatin-acid / ortho-hydroxy-atorvastatin acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C33H34FN2O6">
+      <species metaid="M_MAM03177c" sboTerm="SBO:0000247" id="M_MAM03177c" name="2-hydroxy-atorvastatin-acid / ortho-hydroxy-atorvastatin acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C33H34FN2O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03177c">
+            <rdf:Description rdf:about="#M_MAM03177c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/2hatvacid"/>
@@ -124859,10 +124911,10 @@
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         </annotation>
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-      <species metaid="MAM03179c" sboTerm="SBO:0000247" id="MAM03179c" name="2-hydroxy-atorvastatin-lactone / ortho-hydroxy-atorvastatin lactone" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C33H33FN2O5">
+      <species metaid="M_MAM03179c" sboTerm="SBO:0000247" id="M_MAM03179c" name="2-hydroxy-atorvastatin-lactone / ortho-hydroxy-atorvastatin lactone" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C33H33FN2O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03179c">
+            <rdf:Description rdf:about="#M_MAM03179c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/2hatvlac"/>
@@ -124873,10 +124925,10 @@
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         </annotation>
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-      <species metaid="MAM03177r" sboTerm="SBO:0000247" id="MAM03177r" name="2-hydroxy-atorvastatin-acid / ortho-hydroxy-atorvastatin acid" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C33H34FN2O6">
+      <species metaid="M_MAM03177r" sboTerm="SBO:0000247" id="M_MAM03177r" name="2-hydroxy-atorvastatin-acid / ortho-hydroxy-atorvastatin acid" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C33H34FN2O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03177r">
+            <rdf:Description rdf:about="#M_MAM03177r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/2hatvacid"/>
@@ -124887,10 +124939,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM03178r" sboTerm="SBO:0000247" id="MAM03178r" name="2-hydroxy-atorvastatin-acyl-glucuronide" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C39H42FN2O12">
+      <species metaid="M_MAM03178r" sboTerm="SBO:0000247" id="M_MAM03178r" name="2-hydroxy-atorvastatin-acyl-glucuronide" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C39H42FN2O12">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03178r">
+            <rdf:Description rdf:about="#M_MAM03178r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/2hatvacidgluc"/>
@@ -124901,10 +124953,10 @@
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         </annotation>
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-      <species metaid="MAM03178c" sboTerm="SBO:0000247" id="MAM03178c" name="2-hydroxy-atorvastatin-acyl-glucuronide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C39H42FN2O12">
+      <species metaid="M_MAM03178c" sboTerm="SBO:0000247" id="M_MAM03178c" name="2-hydroxy-atorvastatin-acyl-glucuronide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C39H42FN2O12">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03178c">
+            <rdf:Description rdf:about="#M_MAM03178c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/2hatvacidgluc"/>
@@ -124915,10 +124967,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM03178e" sboTerm="SBO:0000247" id="MAM03178e" name="2-hydroxy-atorvastatin-acyl-glucuronide" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C39H42FN2O12">
+      <species metaid="M_MAM03178e" sboTerm="SBO:0000247" id="M_MAM03178e" name="2-hydroxy-atorvastatin-acyl-glucuronide" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C39H42FN2O12">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03178e">
+            <rdf:Description rdf:about="#M_MAM03178e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/2hatvacidgluc"/>
@@ -124929,10 +124981,10 @@
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         </annotation>
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-      <species metaid="MAM03476r" sboTerm="SBO:0000247" id="MAM03476r" name="atorvastatin-acid" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C33H34FN2O5">
+      <species metaid="M_MAM03476r" sboTerm="SBO:0000247" id="M_MAM03476r" name="atorvastatin-acid" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C33H34FN2O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03476r">
+            <rdf:Description rdf:about="#M_MAM03476r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/atvacid"/>
@@ -124943,10 +124995,10 @@
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-      <species metaid="MAM03177e" sboTerm="SBO:0000247" id="MAM03177e" name="2-hydroxy-atorvastatin-acid / ortho-hydroxy-atorvastatin acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C33H34FN2O6">
+      <species metaid="M_MAM03177e" sboTerm="SBO:0000247" id="M_MAM03177e" name="2-hydroxy-atorvastatin-acid / ortho-hydroxy-atorvastatin acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C33H34FN2O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03177e">
+            <rdf:Description rdf:about="#M_MAM03177e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/2hatvacid"/>
@@ -124957,10 +125009,10 @@
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         </annotation>
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-      <species metaid="MAM03179r" sboTerm="SBO:0000247" id="MAM03179r" name="2-hydroxy-atorvastatin-lactone / ortho-hydroxy-atorvastatin lactone" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C33H33FN2O5">
+      <species metaid="M_MAM03179r" sboTerm="SBO:0000247" id="M_MAM03179r" name="2-hydroxy-atorvastatin-lactone / ortho-hydroxy-atorvastatin lactone" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C33H33FN2O5">
         <annotation>
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-            <rdf:Description rdf:about="#MAM03179r">
+            <rdf:Description rdf:about="#M_MAM03179r">
               <bqbiol:is>
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                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/2hatvlac"/>
@@ -124971,10 +125023,10 @@
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       </species>
-      <species metaid="MAM03180r" sboTerm="SBO:0000247" id="MAM03180r" name="2-hydroxy-atorvastatin-lactone-glucuronide" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C39H40FN2O11">
+      <species metaid="M_MAM03180r" sboTerm="SBO:0000247" id="M_MAM03180r" name="2-hydroxy-atorvastatin-lactone-glucuronide" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C39H40FN2O11">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03180r">
+            <rdf:Description rdf:about="#M_MAM03180r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/2hatvlacgluc"/>
@@ -124985,10 +125037,10 @@
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         </annotation>
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-      <species metaid="MAM03180c" sboTerm="SBO:0000247" id="MAM03180c" name="2-hydroxy-atorvastatin-lactone-glucuronide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C39H40FN2O11">
+      <species metaid="M_MAM03180c" sboTerm="SBO:0000247" id="M_MAM03180c" name="2-hydroxy-atorvastatin-lactone-glucuronide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C39H40FN2O11">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03180c">
+            <rdf:Description rdf:about="#M_MAM03180c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/2hatvlacgluc"/>
@@ -124999,10 +125051,10 @@
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         </annotation>
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-      <species metaid="MAM03180e" sboTerm="SBO:0000247" id="MAM03180e" name="2-hydroxy-atorvastatin-lactone-glucuronide" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C39H40FN2O11">
+      <species metaid="M_MAM03180e" sboTerm="SBO:0000247" id="M_MAM03180e" name="2-hydroxy-atorvastatin-lactone-glucuronide" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C39H40FN2O11">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03180e">
+            <rdf:Description rdf:about="#M_MAM03180e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/2hatvlacgluc"/>
@@ -125013,10 +125065,10 @@
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         </annotation>
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-      <species metaid="MAM03479r" sboTerm="SBO:0000247" id="MAM03479r" name="atorvastatin-lactone" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C33H33FN2O4">
+      <species metaid="M_MAM03479r" sboTerm="SBO:0000247" id="M_MAM03479r" name="atorvastatin-lactone" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C33H33FN2O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03479r">
+            <rdf:Description rdf:about="#M_MAM03479r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/atvlac"/>
@@ -125027,10 +125079,10 @@
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         </annotation>
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-      <species metaid="MAM03179e" sboTerm="SBO:0000247" id="MAM03179e" name="2-hydroxy-atorvastatin-lactone / ortho-hydroxy-atorvastatin lactone" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C33H33FN2O5">
+      <species metaid="M_MAM03179e" sboTerm="SBO:0000247" id="M_MAM03179e" name="2-hydroxy-atorvastatin-lactone / ortho-hydroxy-atorvastatin lactone" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C33H33FN2O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03179e">
+            <rdf:Description rdf:about="#M_MAM03179e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/2hatvlac"/>
@@ -125041,10 +125093,10 @@
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         </annotation>
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-      <species metaid="MAM03185c" sboTerm="SBO:0000247" id="MAM03185c" name="2-hydroxy S-ibuprofen-glucuronide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C19H25O9">
+      <species metaid="M_MAM03185c" sboTerm="SBO:0000247" id="M_MAM03185c" name="2-hydroxy S-ibuprofen-glucuronide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C19H25O9">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03185c">
+            <rdf:Description rdf:about="#M_MAM03185c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/2hibupglu_S"/>
@@ -125054,10 +125106,10 @@
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         </annotation>
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-      <species metaid="MAM03185e" sboTerm="SBO:0000247" id="MAM03185e" name="2-hydroxy S-ibuprofen-glucuronide" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C19H25O9">
+      <species metaid="M_MAM03185e" sboTerm="SBO:0000247" id="M_MAM03185e" name="2-hydroxy S-ibuprofen-glucuronide" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C19H25O9">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03185e">
+            <rdf:Description rdf:about="#M_MAM03185e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/2hibupglu_S"/>
@@ -125067,10 +125119,10 @@
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         </annotation>
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-      <species metaid="MAM03183c" sboTerm="SBO:0000247" id="MAM03183c" name="2-hydroxy-R-ibuprofen" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C13H17O3">
+      <species metaid="M_MAM03183c" sboTerm="SBO:0000247" id="M_MAM03183c" name="2-hydroxy-R-ibuprofen" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C13H17O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03183c">
+            <rdf:Description rdf:about="#M_MAM03183c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/2hibup_R"/>
@@ -125080,10 +125132,10 @@
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         </annotation>
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-      <species metaid="MAM03183e" sboTerm="SBO:0000247" id="MAM03183e" name="2-hydroxy-R-ibuprofen" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C13H17O3">
+      <species metaid="M_MAM03183e" sboTerm="SBO:0000247" id="M_MAM03183e" name="2-hydroxy-R-ibuprofen" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C13H17O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03183e">
+            <rdf:Description rdf:about="#M_MAM03183e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/2hibup_R"/>
@@ -125093,10 +125145,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03184r" sboTerm="SBO:0000247" id="MAM03184r" name="2-hydroxy-S-ibuprofen" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C13H17O3">
+      <species metaid="M_MAM03184r" sboTerm="SBO:0000247" id="M_MAM03184r" name="2-hydroxy-S-ibuprofen" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C13H17O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03184r">
+            <rdf:Description rdf:about="#M_MAM03184r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/2hibup_S"/>
@@ -125106,10 +125158,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM03185r" sboTerm="SBO:0000247" id="MAM03185r" name="2-hydroxy S-ibuprofen-glucuronide" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C19H25O9">
+      <species metaid="M_MAM03185r" sboTerm="SBO:0000247" id="M_MAM03185r" name="2-hydroxy S-ibuprofen-glucuronide" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C19H25O9">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03185r">
+            <rdf:Description rdf:about="#M_MAM03185r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/2hibupglu_S"/>
@@ -125119,10 +125171,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM03184c" sboTerm="SBO:0000247" id="MAM03184c" name="2-hydroxy-S-ibuprofen" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C13H17O3">
+      <species metaid="M_MAM03184c" sboTerm="SBO:0000247" id="M_MAM03184c" name="2-hydroxy-S-ibuprofen" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C13H17O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03184c">
+            <rdf:Description rdf:about="#M_MAM03184c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/2hibup_S"/>
@@ -125132,10 +125184,10 @@
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         </annotation>
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-      <species metaid="MAM03184e" sboTerm="SBO:0000247" id="MAM03184e" name="2-hydroxy-S-ibuprofen" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C13H17O3">
+      <species metaid="M_MAM03184e" sboTerm="SBO:0000247" id="M_MAM03184e" name="2-hydroxy-S-ibuprofen" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C13H17O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03184e">
+            <rdf:Description rdf:about="#M_MAM03184e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/2hibup_S"/>
@@ -125145,10 +125197,10 @@
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         </annotation>
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-      <species metaid="MAM03196c" sboTerm="SBO:0000247" id="MAM03196c" name="31-DMT or M-II, 31-O-desmethyl tacrolimus" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C43H67NO12">
+      <species metaid="M_MAM03196c" sboTerm="SBO:0000247" id="M_MAM03196c" name="31-DMT or M-II, 31-O-desmethyl tacrolimus" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C43H67NO12">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03196c">
+            <rdf:Description rdf:about="#M_MAM03196c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/31dmt"/>
@@ -125159,10 +125211,10 @@
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         </annotation>
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-      <species metaid="MAM03196e" sboTerm="SBO:0000247" id="MAM03196e" name="31-DMT or M-II, 31-O-desmethyl tacrolimus" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C43H67NO12">
+      <species metaid="M_MAM03196e" sboTerm="SBO:0000247" id="M_MAM03196e" name="31-DMT or M-II, 31-O-desmethyl tacrolimus" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C43H67NO12">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03196e">
+            <rdf:Description rdf:about="#M_MAM03196e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/31dmt"/>
@@ -125173,10 +125225,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM03916r" sboTerm="SBO:0000247" id="MAM03916r" name="pravastatin" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H35NaO7">
+      <species metaid="M_MAM03916r" sboTerm="SBO:0000247" id="M_MAM03916r" name="pravastatin" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H35NaO7">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03916r">
+            <rdf:Description rdf:about="#M_MAM03916r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pvs"/>
@@ -125187,10 +125239,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03198r" sboTerm="SBO:0000247" id="MAM03198r" name="3&apos;-alpha,5&apos;beta-dihydroxy-pravastatin / 3&apos;-alpha5&apos;beta6&apos;beta-trihydroxy pravastatin" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C23H34NaO9">
+      <species metaid="M_MAM03198r" sboTerm="SBO:0000247" id="M_MAM03198r" name="3&apos;-alpha,5&apos;beta-dihydroxy-pravastatin / 3&apos;-alpha5&apos;beta6&apos;beta-trihydroxy pravastatin" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C23H34NaO9">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03198r">
+            <rdf:Description rdf:about="#M_MAM03198r">
               <bqbiol:is>
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                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/35dhpvs"/>
@@ -125201,10 +125253,10 @@
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-      <species metaid="MAM03198c" sboTerm="SBO:0000247" id="MAM03198c" name="3&apos;-alpha,5&apos;beta-dihydroxy-pravastatin / 3&apos;-alpha5&apos;beta6&apos;beta-trihydroxy pravastatin" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C23H34NaO9">
+      <species metaid="M_MAM03198c" sboTerm="SBO:0000247" id="M_MAM03198c" name="3&apos;-alpha,5&apos;beta-dihydroxy-pravastatin / 3&apos;-alpha5&apos;beta6&apos;beta-trihydroxy pravastatin" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C23H34NaO9">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03198c">
+            <rdf:Description rdf:about="#M_MAM03198c">
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                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/35dhpvs"/>
@@ -125215,10 +125267,10 @@
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-      <species metaid="MAM03198e" sboTerm="SBO:0000247" id="MAM03198e" name="3&apos;-alpha,5&apos;beta-dihydroxy-pravastatin / 3&apos;-alpha5&apos;beta6&apos;beta-trihydroxy pravastatin" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C23H34NaO9">
+      <species metaid="M_MAM03198e" sboTerm="SBO:0000247" id="M_MAM03198e" name="3&apos;-alpha,5&apos;beta-dihydroxy-pravastatin / 3&apos;-alpha5&apos;beta6&apos;beta-trihydroxy pravastatin" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C23H34NaO9">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03198e">
+            <rdf:Description rdf:about="#M_MAM03198e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/35dhpvs"/>
@@ -125229,10 +125281,10 @@
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-      <species metaid="MAM03934r" sboTerm="SBO:0000247" id="MAM03934r" name="simvastatin lactone form" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H38O5">
+      <species metaid="M_MAM03934r" sboTerm="SBO:0000247" id="M_MAM03934r" name="simvastatin lactone form" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H38O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03934r">
+            <rdf:Description rdf:about="#M_MAM03934r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/smv"/>
@@ -125243,10 +125295,10 @@
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-      <species metaid="MAM03199r" sboTerm="SBO:0000247" id="MAM03199r" name="3&apos;,5&apos;-dihydrodiol-simvastatin-lactone form" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H40O7">
+      <species metaid="M_MAM03199r" sboTerm="SBO:0000247" id="M_MAM03199r" name="3&apos;,5&apos;-dihydrodiol-simvastatin-lactone form" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H40O7">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03199r">
+            <rdf:Description rdf:about="#M_MAM03199r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/35dsmv"/>
@@ -125257,10 +125309,10 @@
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-      <species metaid="MAM03199c" sboTerm="SBO:0000247" id="MAM03199c" name="3&apos;,5&apos;-dihydrodiol-simvastatin-lactone form" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H40O7">
+      <species metaid="M_MAM03199c" sboTerm="SBO:0000247" id="M_MAM03199c" name="3&apos;,5&apos;-dihydrodiol-simvastatin-lactone form" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H40O7">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03199c">
+            <rdf:Description rdf:about="#M_MAM03199c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/35dsmv"/>
@@ -125271,10 +125323,10 @@
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-      <species metaid="MAM03199e" sboTerm="SBO:0000247" id="MAM03199e" name="3&apos;,5&apos;-dihydrodiol-simvastatin-lactone form" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H40O7">
+      <species metaid="M_MAM03199e" sboTerm="SBO:0000247" id="M_MAM03199e" name="3&apos;,5&apos;-dihydrodiol-simvastatin-lactone form" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H40O7">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03199e">
+            <rdf:Description rdf:about="#M_MAM03199e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/35dsmv"/>
@@ -125285,10 +125337,10 @@
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         </annotation>
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-      <species metaid="MAM03225c" sboTerm="SBO:0000247" id="MAM03225c" name="3-hydroxy S-ibuprofen-glucuronide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C19H25O9">
+      <species metaid="M_MAM03225c" sboTerm="SBO:0000247" id="M_MAM03225c" name="3-hydroxy S-ibuprofen-glucuronide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C19H25O9">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03225c">
+            <rdf:Description rdf:about="#M_MAM03225c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/3hibupglu_S"/>
@@ -125298,10 +125350,10 @@
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         </annotation>
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-      <species metaid="MAM03225e" sboTerm="SBO:0000247" id="MAM03225e" name="3-hydroxy S-ibuprofen-glucuronide" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C19H25O9">
+      <species metaid="M_MAM03225e" sboTerm="SBO:0000247" id="M_MAM03225e" name="3-hydroxy S-ibuprofen-glucuronide" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C19H25O9">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03225e">
+            <rdf:Description rdf:about="#M_MAM03225e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/3hibupglu_S"/>
@@ -125311,10 +125363,10 @@
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         </annotation>
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-      <species metaid="MAM03223c" sboTerm="SBO:0000247" id="MAM03223c" name="3-hydroxy R-ibuprofen" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C13H17O3">
+      <species metaid="M_MAM03223c" sboTerm="SBO:0000247" id="M_MAM03223c" name="3-hydroxy R-ibuprofen" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C13H17O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03223c">
+            <rdf:Description rdf:about="#M_MAM03223c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/3hibup_R"/>
@@ -125324,10 +125376,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03223e" sboTerm="SBO:0000247" id="MAM03223e" name="3-hydroxy R-ibuprofen" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C13H17O3">
+      <species metaid="M_MAM03223e" sboTerm="SBO:0000247" id="M_MAM03223e" name="3-hydroxy R-ibuprofen" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C13H17O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03223e">
+            <rdf:Description rdf:about="#M_MAM03223e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/3hibup_R"/>
@@ -125337,10 +125389,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM03224r" sboTerm="SBO:0000247" id="MAM03224r" name="3-hydroxy S-ibuprofen" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C13H17O3">
+      <species metaid="M_MAM03224r" sboTerm="SBO:0000247" id="M_MAM03224r" name="3-hydroxy S-ibuprofen" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C13H17O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03224r">
+            <rdf:Description rdf:about="#M_MAM03224r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/3hibup_S"/>
@@ -125350,10 +125402,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM03225r" sboTerm="SBO:0000247" id="MAM03225r" name="3-hydroxy S-ibuprofen-glucuronide" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C19H25O9">
+      <species metaid="M_MAM03225r" sboTerm="SBO:0000247" id="M_MAM03225r" name="3-hydroxy S-ibuprofen-glucuronide" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C19H25O9">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03225r">
+            <rdf:Description rdf:about="#M_MAM03225r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/3hibupglu_S"/>
@@ -125363,10 +125415,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM03224c" sboTerm="SBO:0000247" id="MAM03224c" name="3-hydroxy S-ibuprofen" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C13H17O3">
+      <species metaid="M_MAM03224c" sboTerm="SBO:0000247" id="M_MAM03224c" name="3-hydroxy S-ibuprofen" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C13H17O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03224c">
+            <rdf:Description rdf:about="#M_MAM03224c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/3hibup_S"/>
@@ -125376,10 +125428,10 @@
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         </annotation>
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-      <species metaid="MAM03224e" sboTerm="SBO:0000247" id="MAM03224e" name="3-hydroxy S-ibuprofen" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C13H17O3">
+      <species metaid="M_MAM03224e" sboTerm="SBO:0000247" id="M_MAM03224e" name="3-hydroxy S-ibuprofen" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C13H17O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03224e">
+            <rdf:Description rdf:about="#M_MAM03224e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/3hibup_S"/>
@@ -125389,10 +125441,10 @@
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-      <species metaid="MAM03228c" sboTerm="SBO:0000247" id="MAM03228c" name="3&apos;&apos;-hydroxy-lovastatin lactone form" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C24H36O6">
+      <species metaid="M_MAM03228c" sboTerm="SBO:0000247" id="M_MAM03228c" name="3&apos;&apos;-hydroxy-lovastatin lactone form" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C24H36O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03228c">
+            <rdf:Description rdf:about="#M_MAM03228c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/3hlvst"/>
@@ -125403,10 +125455,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03229c" sboTerm="SBO:0000247" id="MAM03229c" name="3&apos;&apos;-hydroxy-lovastatin acid form" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H37O7">
+      <species metaid="M_MAM03229c" sboTerm="SBO:0000247" id="M_MAM03229c" name="3&apos;&apos;-hydroxy-lovastatin acid form" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H37O7">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03229c">
+            <rdf:Description rdf:about="#M_MAM03229c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/3hlvstacid"/>
@@ -125417,10 +125469,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03229e" sboTerm="SBO:0000247" id="MAM03229e" name="3&apos;&apos;-hydroxy-lovastatin acid form" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H37O7">
+      <species metaid="M_MAM03229e" sboTerm="SBO:0000247" id="M_MAM03229e" name="3&apos;&apos;-hydroxy-lovastatin acid form" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H37O7">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03229e">
+            <rdf:Description rdf:about="#M_MAM03229e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/3hlvstacid"/>
@@ -125431,10 +125483,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM03236m" sboTerm="SBO:0000247" id="MAM03236m" name="3&apos;-S-hydroxy-pravastatin-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C44H66N7NaO23P3S">
+      <species metaid="M_MAM03236m" sboTerm="SBO:0000247" id="M_MAM03236m" name="3&apos;-S-hydroxy-pravastatin-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C44H66N7NaO23P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03236m">
+            <rdf:Description rdf:about="#M_MAM03236m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/3hpvscoa"/>
@@ -125445,10 +125497,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03238m" sboTerm="SBO:0000247" id="MAM03238m" name="3&apos;-S-hydroxy-pravastatin-tetranor-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C40H58N7NaO21P3S">
+      <species metaid="M_MAM03238m" sboTerm="SBO:0000247" id="M_MAM03238m" name="3&apos;-S-hydroxy-pravastatin-tetranor-CoA" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C40H58N7NaO21P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03238m">
+            <rdf:Description rdf:about="#M_MAM03238m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/3hpvstetcoa"/>
@@ -125459,10 +125511,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03236x" sboTerm="SBO:0000247" id="MAM03236x" name="3&apos;-S-hydroxy-pravastatin-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C44H66N7NaO23P3S">
+      <species metaid="M_MAM03236x" sboTerm="SBO:0000247" id="M_MAM03236x" name="3&apos;-S-hydroxy-pravastatin-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C44H66N7NaO23P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03236x">
+            <rdf:Description rdf:about="#M_MAM03236x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/3hpvscoa"/>
@@ -125473,10 +125525,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03238x" sboTerm="SBO:0000247" id="MAM03238x" name="3&apos;-S-hydroxy-pravastatin-tetranor-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C40H58N7NaO21P3S">
+      <species metaid="M_MAM03238x" sboTerm="SBO:0000247" id="M_MAM03238x" name="3&apos;-S-hydroxy-pravastatin-tetranor-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C40H58N7NaO21P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03238x">
+            <rdf:Description rdf:about="#M_MAM03238x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/3hpvstetcoa"/>
@@ -125487,10 +125539,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03237c" sboTerm="SBO:0000247" id="MAM03237c" name="3&apos;-S-hydroxy-pravastatin-tetranor" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H27NaO6">
+      <species metaid="M_MAM03237c" sboTerm="SBO:0000247" id="M_MAM03237c" name="3&apos;-S-hydroxy-pravastatin-tetranor" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H27NaO6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03237c">
+            <rdf:Description rdf:about="#M_MAM03237c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/3hpvstet"/>
@@ -125501,10 +125553,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03237e" sboTerm="SBO:0000247" id="MAM03237e" name="3&apos;-S-hydroxy-pravastatin-tetranor" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H27NaO6">
+      <species metaid="M_MAM03237e" sboTerm="SBO:0000247" id="M_MAM03237e" name="3&apos;-S-hydroxy-pravastatin-tetranor" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H27NaO6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03237e">
+            <rdf:Description rdf:about="#M_MAM03237e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/3hpvstet"/>
@@ -125515,10 +125567,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03235r" sboTerm="SBO:0000247" id="MAM03235r" name="3&apos;-S-hydroxy-pravastatin" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H35NaO8">
+      <species metaid="M_MAM03235r" sboTerm="SBO:0000247" id="M_MAM03235r" name="3&apos;-S-hydroxy-pravastatin" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H35NaO8">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03235r">
+            <rdf:Description rdf:about="#M_MAM03235r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/3hpvs"/>
@@ -125529,10 +125581,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03235c" sboTerm="SBO:0000247" id="MAM03235c" name="3&apos;-S-hydroxy-pravastatin" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H35NaO8">
+      <species metaid="M_MAM03235c" sboTerm="SBO:0000247" id="M_MAM03235c" name="3&apos;-S-hydroxy-pravastatin" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H35NaO8">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03235c">
+            <rdf:Description rdf:about="#M_MAM03235c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/3hpvs"/>
@@ -125543,10 +125595,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03235e" sboTerm="SBO:0000247" id="MAM03235e" name="3&apos;-S-hydroxy-pravastatin" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H35NaO8">
+      <species metaid="M_MAM03235e" sboTerm="SBO:0000247" id="M_MAM03235e" name="3&apos;-S-hydroxy-pravastatin" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H35NaO8">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03235e">
+            <rdf:Description rdf:about="#M_MAM03235e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/3hpvs"/>
@@ -125557,10 +125609,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03239c" sboTerm="SBO:0000247" id="MAM03239c" name="3&apos;-hydroxy-simvastatin-lactone form" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H38O6">
+      <species metaid="M_MAM03239c" sboTerm="SBO:0000247" id="M_MAM03239c" name="3&apos;-hydroxy-simvastatin-lactone form" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H38O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03239c">
+            <rdf:Description rdf:about="#M_MAM03239c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/3hsmv"/>
@@ -125571,10 +125623,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03240c" sboTerm="SBO:0000247" id="MAM03240c" name="3&apos;-hydroxy-simvastatin-acid form" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C25H39O7">
+      <species metaid="M_MAM03240c" sboTerm="SBO:0000247" id="M_MAM03240c" name="3&apos;-hydroxy-simvastatin-acid form" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C25H39O7">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03240c">
+            <rdf:Description rdf:about="#M_MAM03240c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/3hsmvacid"/>
@@ -125585,10 +125637,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03240e" sboTerm="SBO:0000247" id="MAM03240e" name="3&apos;-hydroxy-simvastatin-acid form" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C25H39O7">
+      <species metaid="M_MAM03240e" sboTerm="SBO:0000247" id="M_MAM03240e" name="3&apos;-hydroxy-simvastatin-acid form" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C25H39O7">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03240e">
+            <rdf:Description rdf:about="#M_MAM03240e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/3hsmvacid"/>
@@ -125599,10 +125651,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03300r" sboTerm="SBO:0000247" id="MAM03300r" name="6&apos;-beta-hydroxy simvastatin lactone" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H38O6">
+      <species metaid="M_MAM03300r" sboTerm="SBO:0000247" id="M_MAM03300r" name="6&apos;-beta-hydroxy simvastatin lactone" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H38O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03300r">
+            <rdf:Description rdf:about="#M_MAM03300r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/6hsmv"/>
@@ -125613,10 +125665,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03239r" sboTerm="SBO:0000247" id="MAM03239r" name="3&apos;-hydroxy-simvastatin-lactone form" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H38O6">
+      <species metaid="M_MAM03239r" sboTerm="SBO:0000247" id="M_MAM03239r" name="3&apos;-hydroxy-simvastatin-lactone form" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H38O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03239r">
+            <rdf:Description rdf:about="#M_MAM03239r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/3hsmv"/>
@@ -125627,10 +125679,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03916c" sboTerm="SBO:0000247" id="MAM03916c" name="pravastatin" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H35NaO7">
+      <species metaid="M_MAM03916c" sboTerm="SBO:0000247" id="M_MAM03916c" name="pravastatin" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H35NaO7">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03916c">
+            <rdf:Description rdf:about="#M_MAM03916c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pvs"/>
@@ -125641,10 +125693,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03241c" sboTerm="SBO:0000247" id="MAM03241c" name="3-alpha-iso-pravastatin" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H35NaO7">
+      <species metaid="M_MAM03241c" sboTerm="SBO:0000247" id="M_MAM03241c" name="3-alpha-iso-pravastatin" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H35NaO7">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03241c">
+            <rdf:Description rdf:about="#M_MAM03241c">
               <bqbiol:is>
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                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/3ispvs"/>
@@ -125655,10 +125707,10 @@
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-      <species metaid="MAM03241e" sboTerm="SBO:0000247" id="MAM03241e" name="3-alpha-iso-pravastatin" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H35NaO7">
+      <species metaid="M_MAM03241e" sboTerm="SBO:0000247" id="M_MAM03241e" name="3-alpha-iso-pravastatin" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H35NaO7">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03241e">
+            <rdf:Description rdf:about="#M_MAM03241e">
               <bqbiol:is>
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                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/3ispvs"/>
@@ -125669,10 +125721,10 @@
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-      <species metaid="MAM03256c" sboTerm="SBO:0000247" id="MAM03256c" name="3-hydroxy-acetaminophen" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H9NO3">
+      <species metaid="M_MAM03256c" sboTerm="SBO:0000247" id="M_MAM03256c" name="3-hydroxy-acetaminophen" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H9NO3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03256c">
+            <rdf:Description rdf:about="#M_MAM03256c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/3ohacmp"/>
@@ -125683,10 +125735,10 @@
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-      <species metaid="MAM03244c" sboTerm="SBO:0000247" id="MAM03244c" name="3-methoxy-acetaminophen" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H11NO3">
+      <species metaid="M_MAM03244c" sboTerm="SBO:0000247" id="M_MAM03244c" name="3-methoxy-acetaminophen" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H11NO3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03244c">
+            <rdf:Description rdf:about="#M_MAM03244c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/3meacmp"/>
@@ -125697,10 +125749,10 @@
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         </annotation>
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-      <species metaid="MAM03402r" sboTerm="SBO:0000247" id="MAM03402r" name="acetaminophen/paracetamol" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H9NO2">
+      <species metaid="M_MAM03402r" sboTerm="SBO:0000247" id="M_MAM03402r" name="acetaminophen/paracetamol" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H9NO2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03402r">
+            <rdf:Description rdf:about="#M_MAM03402r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/acmp"/>
@@ -125714,10 +125766,10 @@
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         </annotation>
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-      <species metaid="MAM03256r" sboTerm="SBO:0000247" id="MAM03256r" name="3-hydroxy-acetaminophen" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H9NO3">
+      <species metaid="M_MAM03256r" sboTerm="SBO:0000247" id="M_MAM03256r" name="3-hydroxy-acetaminophen" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H9NO3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03256r">
+            <rdf:Description rdf:about="#M_MAM03256r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/3ohacmp"/>
@@ -125728,10 +125780,10 @@
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         </annotation>
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-      <species metaid="MAM03256e" sboTerm="SBO:0000247" id="MAM03256e" name="3-hydroxy-acetaminophen" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H9NO3">
+      <species metaid="M_MAM03256e" sboTerm="SBO:0000247" id="M_MAM03256e" name="3-hydroxy-acetaminophen" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H9NO3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03256e">
+            <rdf:Description rdf:about="#M_MAM03256e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/3ohacmp"/>
@@ -125742,10 +125794,10 @@
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         </annotation>
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-      <species metaid="MAM03269c" sboTerm="SBO:0000247" id="MAM03269c" name="4-beta-OH-gliclazide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C15H20N3O4S">
+      <species metaid="M_MAM03269c" sboTerm="SBO:0000247" id="M_MAM03269c" name="4-beta-OH-gliclazide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C15H20N3O4S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03269c">
+            <rdf:Description rdf:about="#M_MAM03269c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/4bhglz"/>
@@ -125756,10 +125808,10 @@
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         </annotation>
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-      <species metaid="MAM03269e" sboTerm="SBO:0000247" id="MAM03269e" name="4-beta-OH-gliclazide" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C15H20N3O4S">
+      <species metaid="M_MAM03269e" sboTerm="SBO:0000247" id="M_MAM03269e" name="4-beta-OH-gliclazide" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C15H20N3O4S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03269e">
+            <rdf:Description rdf:about="#M_MAM03269e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/4bhglz"/>
@@ -125770,10 +125822,10 @@
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         </annotation>
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-      <species metaid="MAM03634r" sboTerm="SBO:0000247" id="MAM03634r" name="Gliclazide" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C15H20N3O3S">
+      <species metaid="M_MAM03634r" sboTerm="SBO:0000247" id="M_MAM03634r" name="Gliclazide" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C15H20N3O3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03634r">
+            <rdf:Description rdf:about="#M_MAM03634r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/glz"/>
@@ -125784,10 +125836,10 @@
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         </annotation>
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-      <species metaid="MAM03269r" sboTerm="SBO:0000247" id="MAM03269r" name="4-beta-OH-gliclazide" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C15H20N3O4S">
+      <species metaid="M_MAM03269r" sboTerm="SBO:0000247" id="M_MAM03269r" name="4-beta-OH-gliclazide" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C15H20N3O4S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03269r">
+            <rdf:Description rdf:about="#M_MAM03269r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/4bhglz"/>
@@ -125798,10 +125850,10 @@
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         </annotation>
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-      <species metaid="MAM03271r" sboTerm="SBO:0000247" id="MAM03271r" name="4-hydroxy-atorvastatin-acid / para-hydroxy-atorvastatin acid" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C33H34FN2O6">
+      <species metaid="M_MAM03271r" sboTerm="SBO:0000247" id="M_MAM03271r" name="4-hydroxy-atorvastatin-acid / para-hydroxy-atorvastatin acid" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C33H34FN2O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03271r">
+            <rdf:Description rdf:about="#M_MAM03271r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/4hatvacid"/>
@@ -125812,10 +125864,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03272c" sboTerm="SBO:0000247" id="MAM03272c" name="4-hydroxy-atorvastatin-lactone / para-hydroxy-atorvastatin lactone" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C33H33FN2O5">
+      <species metaid="M_MAM03272c" sboTerm="SBO:0000247" id="M_MAM03272c" name="4-hydroxy-atorvastatin-lactone / para-hydroxy-atorvastatin lactone" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C33H33FN2O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03272c">
+            <rdf:Description rdf:about="#M_MAM03272c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/4hatvlac"/>
@@ -125826,10 +125878,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM03271c" sboTerm="SBO:0000247" id="MAM03271c" name="4-hydroxy-atorvastatin-acid / para-hydroxy-atorvastatin acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C33H34FN2O6">
+      <species metaid="M_MAM03271c" sboTerm="SBO:0000247" id="M_MAM03271c" name="4-hydroxy-atorvastatin-acid / para-hydroxy-atorvastatin acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C33H34FN2O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03271c">
+            <rdf:Description rdf:about="#M_MAM03271c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/4hatvacid"/>
@@ -125840,10 +125892,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM03271e" sboTerm="SBO:0000247" id="MAM03271e" name="4-hydroxy-atorvastatin-acid / para-hydroxy-atorvastatin acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C33H34FN2O6">
+      <species metaid="M_MAM03271e" sboTerm="SBO:0000247" id="M_MAM03271e" name="4-hydroxy-atorvastatin-acid / para-hydroxy-atorvastatin acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C33H34FN2O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03271e">
+            <rdf:Description rdf:about="#M_MAM03271e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/4hatvacid"/>
@@ -125854,10 +125906,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03272r" sboTerm="SBO:0000247" id="MAM03272r" name="4-hydroxy-atorvastatin-lactone / para-hydroxy-atorvastatin lactone" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C33H33FN2O5">
+      <species metaid="M_MAM03272r" sboTerm="SBO:0000247" id="M_MAM03272r" name="4-hydroxy-atorvastatin-lactone / para-hydroxy-atorvastatin lactone" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C33H33FN2O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03272r">
+            <rdf:Description rdf:about="#M_MAM03272r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/4hatvlac"/>
@@ -125868,10 +125920,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03272e" sboTerm="SBO:0000247" id="MAM03272e" name="4-hydroxy-atorvastatin-lactone / para-hydroxy-atorvastatin lactone" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C33H33FN2O5">
+      <species metaid="M_MAM03272e" sboTerm="SBO:0000247" id="M_MAM03272e" name="4-hydroxy-atorvastatin-lactone / para-hydroxy-atorvastatin lactone" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C33H33FN2O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03272e">
+            <rdf:Description rdf:about="#M_MAM03272e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/4hatvlac"/>
@@ -125882,10 +125934,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03275c" sboTerm="SBO:0000247" id="MAM03275c" name="4-OH-midazolam-glucuronide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H20ClFN3O7">
+      <species metaid="M_MAM03275c" sboTerm="SBO:0000247" id="M_MAM03275c" name="4-OH-midazolam-glucuronide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H20ClFN3O7">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03275c">
+            <rdf:Description rdf:about="#M_MAM03275c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/4hmdgluc"/>
@@ -125896,10 +125948,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM03275e" sboTerm="SBO:0000247" id="MAM03275e" name="4-OH-midazolam-glucuronide" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H20ClFN3O7">
+      <species metaid="M_MAM03275e" sboTerm="SBO:0000247" id="M_MAM03275e" name="4-OH-midazolam-glucuronide" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H20ClFN3O7">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03275e">
+            <rdf:Description rdf:about="#M_MAM03275e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/4hmdgluc"/>
@@ -125910,10 +125962,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03275r" sboTerm="SBO:0000247" id="MAM03275r" name="4-OH-midazolam-glucuronide" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H20ClFN3O7">
+      <species metaid="M_MAM03275r" sboTerm="SBO:0000247" id="M_MAM03275r" name="4-OH-midazolam-glucuronide" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H20ClFN3O7">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03275r">
+            <rdf:Description rdf:about="#M_MAM03275r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/4hmdgluc"/>
@@ -125924,10 +125976,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03278c" sboTerm="SBO:0000247" id="MAM03278c" name="4-OH-midazolam" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H13ClFN3O">
+      <species metaid="M_MAM03278c" sboTerm="SBO:0000247" id="M_MAM03278c" name="4-OH-midazolam" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H13ClFN3O">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03278c">
+            <rdf:Description rdf:about="#M_MAM03278c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/4ohmdz"/>
@@ -125938,10 +125990,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03278e" sboTerm="SBO:0000247" id="MAM03278e" name="4-OH-midazolam" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H13ClFN3O">
+      <species metaid="M_MAM03278e" sboTerm="SBO:0000247" id="M_MAM03278e" name="4-OH-midazolam" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H13ClFN3O">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03278e">
+            <rdf:Description rdf:about="#M_MAM03278e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/4ohmdz"/>
@@ -125952,10 +126004,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM04007r" sboTerm="SBO:0000247" id="MAM04007r" name="triol metabolite of pravastatin" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H37NaO9">
+      <species metaid="M_MAM04007r" sboTerm="SBO:0000247" id="M_MAM04007r" name="triol metabolite of pravastatin" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H37NaO9">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM04007r">
+            <rdf:Description rdf:about="#M_MAM04007r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/tripvs"/>
@@ -125966,10 +126018,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03279r" sboTerm="SBO:0000247" id="MAM03279r" name="3-keto-5,6,-dihydroxy-pravastatin" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H35NaO9">
+      <species metaid="M_MAM03279r" sboTerm="SBO:0000247" id="M_MAM03279r" name="3-keto-5,6,-dihydroxy-pravastatin" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H35NaO9">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03279r">
+            <rdf:Description rdf:about="#M_MAM03279r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/56dhpvs"/>
@@ -125980,10 +126032,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03279c" sboTerm="SBO:0000247" id="MAM03279c" name="3-keto-5,6,-dihydroxy-pravastatin" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H35NaO9">
+      <species metaid="M_MAM03279c" sboTerm="SBO:0000247" id="M_MAM03279c" name="3-keto-5,6,-dihydroxy-pravastatin" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H35NaO9">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03279c">
+            <rdf:Description rdf:about="#M_MAM03279c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/56dhpvs"/>
@@ -125994,10 +126046,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03279e" sboTerm="SBO:0000247" id="MAM03279e" name="3-keto-5,6,-dihydroxy-pravastatin" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H35NaO9">
+      <species metaid="M_MAM03279e" sboTerm="SBO:0000247" id="M_MAM03279e" name="3-keto-5,6,-dihydroxy-pravastatin" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H35NaO9">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03279e">
+            <rdf:Description rdf:about="#M_MAM03279e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/56dhpvs"/>
@@ -126008,10 +126060,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03241r" sboTerm="SBO:0000247" id="MAM03241r" name="3-alpha-iso-pravastatin" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H35NaO7">
+      <species metaid="M_MAM03241r" sboTerm="SBO:0000247" id="M_MAM03241r" name="3-alpha-iso-pravastatin" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H35NaO7">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03241r">
+            <rdf:Description rdf:about="#M_MAM03241r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/3ispvs"/>
@@ -126022,10 +126074,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03280r" sboTerm="SBO:0000247" id="MAM03280r" name="5,6-epoxy-3-alpha-iso-pravastatin" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H35NaO8">
+      <species metaid="M_MAM03280r" sboTerm="SBO:0000247" id="M_MAM03280r" name="5,6-epoxy-3-alpha-iso-pravastatin" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H35NaO8">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03280r">
+            <rdf:Description rdf:about="#M_MAM03280r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/56eppvs"/>
@@ -126036,10 +126088,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03280c" sboTerm="SBO:0000247" id="MAM03280c" name="5,6-epoxy-3-alpha-iso-pravastatin" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H35NaO8">
+      <species metaid="M_MAM03280c" sboTerm="SBO:0000247" id="M_MAM03280c" name="5,6-epoxy-3-alpha-iso-pravastatin" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H35NaO8">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03280c">
+            <rdf:Description rdf:about="#M_MAM03280c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/56eppvs"/>
@@ -126050,10 +126102,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03280e" sboTerm="SBO:0000247" id="MAM03280e" name="5,6-epoxy-3-alpha-iso-pravastatin" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H35NaO8">
+      <species metaid="M_MAM03280e" sboTerm="SBO:0000247" id="M_MAM03280e" name="5,6-epoxy-3-alpha-iso-pravastatin" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H35NaO8">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03280e">
+            <rdf:Description rdf:about="#M_MAM03280e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/56eppvs"/>
@@ -126064,10 +126116,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03285r" sboTerm="SBO:0000247" id="MAM03285r" name="5-hydroxy-fluvastatin" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C24H25FNNaO5">
+      <species metaid="M_MAM03285r" sboTerm="SBO:0000247" id="M_MAM03285r" name="5-hydroxy-fluvastatin" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C24H25FNNaO5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03285r">
+            <rdf:Description rdf:about="#M_MAM03285r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/5ohfvs"/>
@@ -126078,10 +126130,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03286r" sboTerm="SBO:0000247" id="MAM03286r" name="5-hydroxy-fluvastatin-glucuronide" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C30H32FNNaO11">
+      <species metaid="M_MAM03286r" sboTerm="SBO:0000247" id="M_MAM03286r" name="5-hydroxy-fluvastatin-glucuronide" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C30H32FNNaO11">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03286r">
+            <rdf:Description rdf:about="#M_MAM03286r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/5ohfvsglu"/>
@@ -126092,10 +126144,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03286c" sboTerm="SBO:0000247" id="MAM03286c" name="5-hydroxy-fluvastatin-glucuronide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C30H32FNNaO11">
+      <species metaid="M_MAM03286c" sboTerm="SBO:0000247" id="M_MAM03286c" name="5-hydroxy-fluvastatin-glucuronide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C30H32FNNaO11">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03286c">
+            <rdf:Description rdf:about="#M_MAM03286c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/5ohfvsglu"/>
@@ -126106,10 +126158,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03286e" sboTerm="SBO:0000247" id="MAM03286e" name="5-hydroxy-fluvastatin-glucuronide" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C30H32FNNaO11">
+      <species metaid="M_MAM03286e" sboTerm="SBO:0000247" id="M_MAM03286e" name="5-hydroxy-fluvastatin-glucuronide" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C30H32FNNaO11">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03286e">
+            <rdf:Description rdf:about="#M_MAM03286e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/5ohfvsglu"/>
@@ -126120,10 +126172,10 @@
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-      <species metaid="MAM03579r" sboTerm="SBO:0000247" id="MAM03579r" name="fluvastatin" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C24H25FNNaO4">
+      <species metaid="M_MAM03579r" sboTerm="SBO:0000247" id="M_MAM03579r" name="fluvastatin" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C24H25FNNaO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03579r">
+            <rdf:Description rdf:about="#M_MAM03579r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/fvs"/>
@@ -126134,10 +126186,10 @@
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-      <species metaid="MAM03285c" sboTerm="SBO:0000247" id="MAM03285c" name="5-hydroxy-fluvastatin" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C24H25FNNaO5">
+      <species metaid="M_MAM03285c" sboTerm="SBO:0000247" id="M_MAM03285c" name="5-hydroxy-fluvastatin" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C24H25FNNaO5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03285c">
+            <rdf:Description rdf:about="#M_MAM03285c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/5ohfvs"/>
@@ -126148,10 +126200,10 @@
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-      <species metaid="MAM03285e" sboTerm="SBO:0000247" id="MAM03285e" name="5-hydroxy-fluvastatin" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C24H25FNNaO5">
+      <species metaid="M_MAM03285e" sboTerm="SBO:0000247" id="M_MAM03285e" name="5-hydroxy-fluvastatin" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C24H25FNNaO5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03285e">
+            <rdf:Description rdf:about="#M_MAM03285e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/5ohfvs"/>
@@ -126162,10 +126214,10 @@
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-      <species metaid="MAM03289c" sboTerm="SBO:0000247" id="MAM03289c" name="6-alpha-OH-gliclazide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C15H20N3O4S">
+      <species metaid="M_MAM03289c" sboTerm="SBO:0000247" id="M_MAM03289c" name="6-alpha-OH-gliclazide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C15H20N3O4S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03289c">
+            <rdf:Description rdf:about="#M_MAM03289c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/6ahglz"/>
@@ -126176,10 +126228,10 @@
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         </annotation>
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-      <species metaid="MAM03289e" sboTerm="SBO:0000247" id="MAM03289e" name="6-alpha-OH-gliclazide" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C15H20N3O4S">
+      <species metaid="M_MAM03289e" sboTerm="SBO:0000247" id="M_MAM03289e" name="6-alpha-OH-gliclazide" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C15H20N3O4S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03289e">
+            <rdf:Description rdf:about="#M_MAM03289e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/6ahglz"/>
@@ -126190,10 +126242,10 @@
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-      <species metaid="MAM03289r" sboTerm="SBO:0000247" id="MAM03289r" name="6-alpha-OH-gliclazide" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C15H20N3O4S">
+      <species metaid="M_MAM03289r" sboTerm="SBO:0000247" id="M_MAM03289r" name="6-alpha-OH-gliclazide" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C15H20N3O4S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03289r">
+            <rdf:Description rdf:about="#M_MAM03289r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/6ahglz"/>
@@ -126204,10 +126256,10 @@
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-      <species metaid="MAM03290c" sboTerm="SBO:0000247" id="MAM03290c" name="6-beta-OH-gliclazide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C15H20N3O4S">
+      <species metaid="M_MAM03290c" sboTerm="SBO:0000247" id="M_MAM03290c" name="6-beta-OH-gliclazide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C15H20N3O4S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03290c">
+            <rdf:Description rdf:about="#M_MAM03290c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/6bhglz"/>
@@ -126218,10 +126270,10 @@
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         </annotation>
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-      <species metaid="MAM03290e" sboTerm="SBO:0000247" id="MAM03290e" name="6-beta-OH-gliclazide" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C15H20N3O4S">
+      <species metaid="M_MAM03290e" sboTerm="SBO:0000247" id="M_MAM03290e" name="6-beta-OH-gliclazide" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C15H20N3O4S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03290e">
+            <rdf:Description rdf:about="#M_MAM03290e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/6bhglz"/>
@@ -126232,10 +126284,10 @@
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         </annotation>
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-      <species metaid="MAM03291c" sboTerm="SBO:0000247" id="MAM03291c" name="6-beta-OH-gliclazide-glucuronide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C21H27N3O10S">
+      <species metaid="M_MAM03291c" sboTerm="SBO:0000247" id="M_MAM03291c" name="6-beta-OH-gliclazide-glucuronide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C21H27N3O10S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03291c">
+            <rdf:Description rdf:about="#M_MAM03291c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/6bhglzglc"/>
@@ -126246,10 +126298,10 @@
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         </annotation>
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-      <species metaid="MAM03291e" sboTerm="SBO:0000247" id="MAM03291e" name="6-beta-OH-gliclazide-glucuronide" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C21H27N3O10S">
+      <species metaid="M_MAM03291e" sboTerm="SBO:0000247" id="M_MAM03291e" name="6-beta-OH-gliclazide-glucuronide" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C21H27N3O10S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03291e">
+            <rdf:Description rdf:about="#M_MAM03291e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/6bhglzglc"/>
@@ -126260,10 +126312,10 @@
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         </annotation>
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-      <species metaid="MAM03290r" sboTerm="SBO:0000247" id="MAM03290r" name="6-beta-OH-gliclazide" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C15H20N3O4S">
+      <species metaid="M_MAM03290r" sboTerm="SBO:0000247" id="M_MAM03290r" name="6-beta-OH-gliclazide" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C15H20N3O4S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03290r">
+            <rdf:Description rdf:about="#M_MAM03290r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/6bhglz"/>
@@ -126274,10 +126326,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM03291r" sboTerm="SBO:0000247" id="MAM03291r" name="6-beta-OH-gliclazide-glucuronide" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C21H27N3O10S">
+      <species metaid="M_MAM03291r" sboTerm="SBO:0000247" id="M_MAM03291r" name="6-beta-OH-gliclazide-glucuronide" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C21H27N3O10S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03291r">
+            <rdf:Description rdf:about="#M_MAM03291r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/6bhglzglc"/>
@@ -126288,10 +126340,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM03292c" sboTerm="SBO:0000247" id="MAM03292c" name="6&apos;-beta-carboxy-simvastatin-lactone form" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C25H35O7">
+      <species metaid="M_MAM03292c" sboTerm="SBO:0000247" id="M_MAM03292c" name="6&apos;-beta-carboxy-simvastatin-lactone form" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C25H35O7">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03292c">
+            <rdf:Description rdf:about="#M_MAM03292c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/6csmv"/>
@@ -126302,10 +126354,10 @@
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-      <species metaid="MAM03293c" sboTerm="SBO:0000247" id="MAM03293c" name="6&apos;-beta-carboxy-simvastatin-acid form" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C25H36O8">
+      <species metaid="M_MAM03293c" sboTerm="SBO:0000247" id="M_MAM03293c" name="6&apos;-beta-carboxy-simvastatin-acid form" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C25H36O8">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03293c">
+            <rdf:Description rdf:about="#M_MAM03293c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/6csmvacid"/>
@@ -126316,10 +126368,10 @@
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         </annotation>
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-      <species metaid="MAM03293e" sboTerm="SBO:0000247" id="MAM03293e" name="6&apos;-beta-carboxy-simvastatin-acid form" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C25H36O8">
+      <species metaid="M_MAM03293e" sboTerm="SBO:0000247" id="M_MAM03293e" name="6&apos;-beta-carboxy-simvastatin-acid form" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C25H36O8">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03293e">
+            <rdf:Description rdf:about="#M_MAM03293e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/6csmvacid"/>
@@ -126330,10 +126382,10 @@
           </rdf:RDF>
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-      <species metaid="MAM03304r" sboTerm="SBO:0000247" id="MAM03304r" name="6&apos;-exomethylene-simvastatin-lactone form" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H36O5">
+      <species metaid="M_MAM03304r" sboTerm="SBO:0000247" id="M_MAM03304r" name="6&apos;-exomethylene-simvastatin-lactone form" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H36O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03304r">
+            <rdf:Description rdf:about="#M_MAM03304r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/6msmv"/>
@@ -126344,10 +126396,10 @@
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-      <species metaid="MAM03292r" sboTerm="SBO:0000247" id="MAM03292r" name="6&apos;-beta-carboxy-simvastatin-lactone form" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C25H35O7">
+      <species metaid="M_MAM03292r" sboTerm="SBO:0000247" id="M_MAM03292r" name="6&apos;-beta-carboxy-simvastatin-lactone form" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C25H35O7">
         <annotation>
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-            <rdf:Description rdf:about="#MAM03292r">
+            <rdf:Description rdf:about="#M_MAM03292r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/6csmv"/>
@@ -126358,10 +126410,10 @@
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-      <species metaid="MAM03294c" sboTerm="SBO:0000247" id="MAM03294c" name="6-epipravastatin" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H35NaO7">
+      <species metaid="M_MAM03294c" sboTerm="SBO:0000247" id="M_MAM03294c" name="6-epipravastatin" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H35NaO7">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03294c">
+            <rdf:Description rdf:about="#M_MAM03294c">
               <bqbiol:is>
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                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/6epvs"/>
@@ -126372,10 +126424,10 @@
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-      <species metaid="MAM03294e" sboTerm="SBO:0000247" id="MAM03294e" name="6-epipravastatin" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H35NaO7">
+      <species metaid="M_MAM03294e" sboTerm="SBO:0000247" id="M_MAM03294e" name="6-epipravastatin" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H35NaO7">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03294e">
+            <rdf:Description rdf:about="#M_MAM03294e">
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                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/6epvs"/>
@@ -126386,10 +126438,10 @@
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-      <species metaid="MAM03296c" sboTerm="SBO:0000247" id="MAM03296c" name="6&apos;-beta-hydroxy-lovastatin lactone form" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C24H36O6">
+      <species metaid="M_MAM03296c" sboTerm="SBO:0000247" id="M_MAM03296c" name="6&apos;-beta-hydroxy-lovastatin lactone form" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C24H36O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03296c">
+            <rdf:Description rdf:about="#M_MAM03296c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/6hlvst"/>
@@ -126400,10 +126452,10 @@
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-      <species metaid="MAM03297c" sboTerm="SBO:0000247" id="MAM03297c" name="6&apos;-beta-hydroxy-lovastatin-acid form" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H37O7">
+      <species metaid="M_MAM03297c" sboTerm="SBO:0000247" id="M_MAM03297c" name="6&apos;-beta-hydroxy-lovastatin-acid form" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H37O7">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03297c">
+            <rdf:Description rdf:about="#M_MAM03297c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/6hlvstacid"/>
@@ -126414,10 +126466,10 @@
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-      <species metaid="MAM03296e" sboTerm="SBO:0000247" id="MAM03296e" name="6&apos;-beta-hydroxy-lovastatin lactone form" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C24H36O6">
+      <species metaid="M_MAM03296e" sboTerm="SBO:0000247" id="M_MAM03296e" name="6&apos;-beta-hydroxy-lovastatin lactone form" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C24H36O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03296e">
+            <rdf:Description rdf:about="#M_MAM03296e">
               <bqbiol:is>
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                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/6hlvst"/>
@@ -126428,10 +126480,10 @@
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-      <species metaid="MAM03298c" sboTerm="SBO:0000247" id="MAM03298c" name="6&apos;-beta-hydroxy-methyl-simvastatin-lactone form" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H38O6">
+      <species metaid="M_MAM03298c" sboTerm="SBO:0000247" id="M_MAM03298c" name="6&apos;-beta-hydroxy-methyl-simvastatin-lactone form" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H38O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03298c">
+            <rdf:Description rdf:about="#M_MAM03298c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/6hmsmv"/>
@@ -126442,10 +126494,10 @@
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-      <species metaid="MAM03299c" sboTerm="SBO:0000247" id="MAM03299c" name="6&apos;-beta-hydroxy-methyl-simvastatin-acid form" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C25H39O7">
+      <species metaid="M_MAM03299c" sboTerm="SBO:0000247" id="M_MAM03299c" name="6&apos;-beta-hydroxy-methyl-simvastatin-acid form" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C25H39O7">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03299c">
+            <rdf:Description rdf:about="#M_MAM03299c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/6hmsmvacid"/>
@@ -126456,10 +126508,10 @@
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-      <species metaid="MAM03299e" sboTerm="SBO:0000247" id="MAM03299e" name="6&apos;-beta-hydroxy-methyl-simvastatin-acid form" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C25H39O7">
+      <species metaid="M_MAM03299e" sboTerm="SBO:0000247" id="M_MAM03299e" name="6&apos;-beta-hydroxy-methyl-simvastatin-acid form" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C25H39O7">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03299e">
+            <rdf:Description rdf:about="#M_MAM03299e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/6hmsmvacid"/>
@@ -126470,10 +126522,10 @@
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-      <species metaid="MAM03298r" sboTerm="SBO:0000247" id="MAM03298r" name="6&apos;-beta-hydroxy-methyl-simvastatin-lactone form" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H38O6">
+      <species metaid="M_MAM03298r" sboTerm="SBO:0000247" id="M_MAM03298r" name="6&apos;-beta-hydroxy-methyl-simvastatin-lactone form" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H38O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03298r">
+            <rdf:Description rdf:about="#M_MAM03298r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/6hmsmv"/>
@@ -126484,10 +126536,10 @@
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         </annotation>
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-      <species metaid="MAM03300c" sboTerm="SBO:0000247" id="MAM03300c" name="6&apos;-beta-hydroxy simvastatin lactone" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H38O6">
+      <species metaid="M_MAM03300c" sboTerm="SBO:0000247" id="M_MAM03300c" name="6&apos;-beta-hydroxy simvastatin lactone" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H38O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03300c">
+            <rdf:Description rdf:about="#M_MAM03300c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/6hsmv"/>
@@ -126498,10 +126550,10 @@
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         </annotation>
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-      <species metaid="MAM03301c" sboTerm="SBO:0000247" id="MAM03301c" name="6&apos;-beta-hydroxy simvastatin acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C25H39O7">
+      <species metaid="M_MAM03301c" sboTerm="SBO:0000247" id="M_MAM03301c" name="6&apos;-beta-hydroxy simvastatin acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C25H39O7">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03301c">
+            <rdf:Description rdf:about="#M_MAM03301c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/6hsmvacid"/>
@@ -126512,10 +126564,10 @@
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-      <species metaid="MAM03301e" sboTerm="SBO:0000247" id="MAM03301e" name="6&apos;-beta-hydroxy simvastatin acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C25H39O7">
+      <species metaid="M_MAM03301e" sboTerm="SBO:0000247" id="M_MAM03301e" name="6&apos;-beta-hydroxy simvastatin acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C25H39O7">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03301e">
+            <rdf:Description rdf:about="#M_MAM03301e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/6hsmvacid"/>
@@ -126526,10 +126578,10 @@
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-      <species metaid="MAM03303c" sboTerm="SBO:0000247" id="MAM03303c" name="6&apos;-exomethylene-lovastatin lactone form" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C24H34O5">
+      <species metaid="M_MAM03303c" sboTerm="SBO:0000247" id="M_MAM03303c" name="6&apos;-exomethylene-lovastatin lactone form" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C24H34O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03303c">
+            <rdf:Description rdf:about="#M_MAM03303c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/6melvst"/>
@@ -126540,10 +126592,10 @@
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-      <species metaid="MAM03302c" sboTerm="SBO:0000247" id="MAM03302c" name="6&apos;-exomethylene-lovastatin-acid form" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H35O6">
+      <species metaid="M_MAM03302c" sboTerm="SBO:0000247" id="M_MAM03302c" name="6&apos;-exomethylene-lovastatin-acid form" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H35O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03302c">
+            <rdf:Description rdf:about="#M_MAM03302c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/6melvacid"/>
@@ -126554,10 +126606,10 @@
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-      <species metaid="MAM03302e" sboTerm="SBO:0000247" id="MAM03302e" name="6&apos;-exomethylene-lovastatin-acid form" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H35O6">
+      <species metaid="M_MAM03302e" sboTerm="SBO:0000247" id="M_MAM03302e" name="6&apos;-exomethylene-lovastatin-acid form" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H35O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03302e">
+            <rdf:Description rdf:about="#M_MAM03302e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/6melvacid"/>
@@ -126568,10 +126620,10 @@
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         </annotation>
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-      <species metaid="MAM03303e" sboTerm="SBO:0000247" id="MAM03303e" name="6&apos;-exomethylene-lovastatin lactone form" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C24H34O5">
+      <species metaid="M_MAM03303e" sboTerm="SBO:0000247" id="M_MAM03303e" name="6&apos;-exomethylene-lovastatin lactone form" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C24H34O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03303e">
+            <rdf:Description rdf:about="#M_MAM03303e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/6melvst"/>
@@ -126582,10 +126634,10 @@
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         </annotation>
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+      <species metaid="M_MAM03306r" sboTerm="SBO:0000247" id="M_MAM03306r" name="6-hydroxy-fluvastatin-glucuronide" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C30H32FNNaO11">
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+            <rdf:Description rdf:about="#M_MAM03306r">
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@@ -126596,10 +126648,10 @@
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+      <species metaid="M_MAM03306c" sboTerm="SBO:0000247" id="M_MAM03306c" name="6-hydroxy-fluvastatin-glucuronide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C30H32FNNaO11">
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-            <rdf:Description rdf:about="#MAM03306c">
+            <rdf:Description rdf:about="#M_MAM03306c">
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@@ -126610,10 +126662,10 @@
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+      <species metaid="M_MAM03306e" sboTerm="SBO:0000247" id="M_MAM03306e" name="6-hydroxy-fluvastatin-glucuronide" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C30H32FNNaO11">
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-            <rdf:Description rdf:about="#MAM03306e">
+            <rdf:Description rdf:about="#M_MAM03306e">
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@@ -126624,10 +126676,10 @@
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+      <species metaid="M_MAM03305r" sboTerm="SBO:0000247" id="M_MAM03305r" name="6-hydroxy-fluvastatin" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C24H25FNNaO5">
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-            <rdf:Description rdf:about="#MAM03305r">
+            <rdf:Description rdf:about="#M_MAM03305r">
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                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/6ohfvs"/>
@@ -126638,10 +126690,10 @@
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+      <species metaid="M_MAM03305c" sboTerm="SBO:0000247" id="M_MAM03305c" name="6-hydroxy-fluvastatin" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C24H25FNNaO5">
         <annotation>
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-            <rdf:Description rdf:about="#MAM03305c">
+            <rdf:Description rdf:about="#M_MAM03305c">
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@@ -126652,10 +126704,10 @@
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+      <species metaid="M_MAM03305e" sboTerm="SBO:0000247" id="M_MAM03305e" name="6-hydroxy-fluvastatin" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C24H25FNNaO5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03305e">
+            <rdf:Description rdf:about="#M_MAM03305e">
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@@ -126666,10 +126718,10 @@
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-      <species metaid="MAM03307c" sboTerm="SBO:0000247" id="MAM03307c" name="7-alpha-OH-gliclazide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C15H20N3O4S">
+      <species metaid="M_MAM03307c" sboTerm="SBO:0000247" id="M_MAM03307c" name="7-alpha-OH-gliclazide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C15H20N3O4S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03307c">
+            <rdf:Description rdf:about="#M_MAM03307c">
               <bqbiol:is>
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@@ -126680,10 +126732,10 @@
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+      <species metaid="M_MAM03307e" sboTerm="SBO:0000247" id="M_MAM03307e" name="7-alpha-OH-gliclazide" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C15H20N3O4S">
         <annotation>
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-            <rdf:Description rdf:about="#MAM03307e">
+            <rdf:Description rdf:about="#M_MAM03307e">
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@@ -126694,10 +126746,10 @@
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+      <species metaid="M_MAM03307r" sboTerm="SBO:0000247" id="M_MAM03307r" name="7-alpha-OH-gliclazide" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C15H20N3O4S">
         <annotation>
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-            <rdf:Description rdf:about="#MAM03307r">
+            <rdf:Description rdf:about="#M_MAM03307r">
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                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/7ahglz"/>
@@ -126708,10 +126760,10 @@
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-      <species metaid="MAM03308c" sboTerm="SBO:0000247" id="MAM03308c" name="7-beta-OH-gliclazide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C15H20N3O4S">
+      <species metaid="M_MAM03308c" sboTerm="SBO:0000247" id="M_MAM03308c" name="7-beta-OH-gliclazide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C15H20N3O4S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03308c">
+            <rdf:Description rdf:about="#M_MAM03308c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/7bhglz"/>
@@ -126722,10 +126774,10 @@
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-      <species metaid="MAM03308e" sboTerm="SBO:0000247" id="MAM03308e" name="7-beta-OH-gliclazide" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C15H20N3O4S">
+      <species metaid="M_MAM03308e" sboTerm="SBO:0000247" id="M_MAM03308e" name="7-beta-OH-gliclazide" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C15H20N3O4S">
         <annotation>
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-            <rdf:Description rdf:about="#MAM03308e">
+            <rdf:Description rdf:about="#M_MAM03308e">
               <bqbiol:is>
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                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/7bhglz"/>
@@ -126736,10 +126788,10 @@
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-      <species metaid="MAM03309c" sboTerm="SBO:0000247" id="MAM03309c" name="7-beta-OH-gliclazide-glucuronide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C21H27N3O10S">
+      <species metaid="M_MAM03309c" sboTerm="SBO:0000247" id="M_MAM03309c" name="7-beta-OH-gliclazide-glucuronide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C21H27N3O10S">
         <annotation>
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-            <rdf:Description rdf:about="#MAM03309c">
+            <rdf:Description rdf:about="#M_MAM03309c">
               <bqbiol:is>
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                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/7bhglzglc"/>
@@ -126750,10 +126802,10 @@
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-      <species metaid="MAM03309e" sboTerm="SBO:0000247" id="MAM03309e" name="7-beta-OH-gliclazide-glucuronide" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C21H27N3O10S">
+      <species metaid="M_MAM03309e" sboTerm="SBO:0000247" id="M_MAM03309e" name="7-beta-OH-gliclazide-glucuronide" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C21H27N3O10S">
         <annotation>
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-            <rdf:Description rdf:about="#MAM03309e">
+            <rdf:Description rdf:about="#M_MAM03309e">
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                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/7bhglzglc"/>
@@ -126764,10 +126816,10 @@
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-      <species metaid="MAM03308r" sboTerm="SBO:0000247" id="MAM03308r" name="7-beta-OH-gliclazide" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C15H20N3O4S">
+      <species metaid="M_MAM03308r" sboTerm="SBO:0000247" id="M_MAM03308r" name="7-beta-OH-gliclazide" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C15H20N3O4S">
         <annotation>
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-            <rdf:Description rdf:about="#MAM03308r">
+            <rdf:Description rdf:about="#M_MAM03308r">
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                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/7bhglz"/>
@@ -126778,10 +126830,10 @@
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+      <species metaid="M_MAM03309r" sboTerm="SBO:0000247" id="M_MAM03309r" name="7-beta-OH-gliclazide-glucuronide" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C21H27N3O10S">
         <annotation>
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-            <rdf:Description rdf:about="#MAM03309r">
+            <rdf:Description rdf:about="#M_MAM03309r">
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                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/7bhglzglc"/>
@@ -126792,10 +126844,10 @@
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-      <species metaid="MAM03312r" sboTerm="SBO:0000247" id="MAM03312r" name="7-hydroxy-3-alpha-iso-pravastatin" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H35NaO8">
+      <species metaid="M_MAM03312r" sboTerm="SBO:0000247" id="M_MAM03312r" name="7-hydroxy-3-alpha-iso-pravastatin" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H35NaO8">
         <annotation>
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-            <rdf:Description rdf:about="#MAM03312r">
+            <rdf:Description rdf:about="#M_MAM03312r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/7hpvs"/>
@@ -126806,10 +126858,10 @@
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-      <species metaid="MAM03312c" sboTerm="SBO:0000247" id="MAM03312c" name="7-hydroxy-3-alpha-iso-pravastatin" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H35NaO8">
+      <species metaid="M_MAM03312c" sboTerm="SBO:0000247" id="M_MAM03312c" name="7-hydroxy-3-alpha-iso-pravastatin" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H35NaO8">
         <annotation>
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-            <rdf:Description rdf:about="#MAM03312c">
+            <rdf:Description rdf:about="#M_MAM03312c">
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                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/7hpvs"/>
@@ -126820,10 +126872,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03312e" sboTerm="SBO:0000247" id="MAM03312e" name="7-hydroxy-3-alpha-iso-pravastatin" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H35NaO8">
+      <species metaid="M_MAM03312e" sboTerm="SBO:0000247" id="M_MAM03312e" name="7-hydroxy-3-alpha-iso-pravastatin" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H35NaO8">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03312e">
+            <rdf:Description rdf:about="#M_MAM03312e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/7hpvs"/>
@@ -126834,10 +126886,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03418e" sboTerm="SBO:0000247" id="MAM03418e" name="allopurinol" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H4N4O">
+      <species metaid="M_MAM03418e" sboTerm="SBO:0000247" id="M_MAM03418e" name="allopurinol" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H4N4O">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03418e">
+            <rdf:Description rdf:about="#M_MAM03418e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/allop"/>
@@ -126848,10 +126900,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03418c" sboTerm="SBO:0000247" id="MAM03418c" name="allopurinol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H4N4O">
+      <species metaid="M_MAM03418c" sboTerm="SBO:0000247" id="M_MAM03418c" name="allopurinol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H4N4O">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03418c">
+            <rdf:Description rdf:about="#M_MAM03418c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/allop"/>
@@ -126862,10 +126914,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03402c" sboTerm="SBO:0000247" id="MAM03402c" name="acetaminophen/paracetamol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H9NO2">
+      <species metaid="M_MAM03402c" sboTerm="SBO:0000247" id="M_MAM03402c" name="acetaminophen/paracetamol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H9NO2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03402c">
+            <rdf:Description rdf:about="#M_MAM03402c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/acmp"/>
@@ -126879,10 +126931,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03402e" sboTerm="SBO:0000247" id="MAM03402e" name="acetaminophen/paracetamol" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H9NO2">
+      <species metaid="M_MAM03402e" sboTerm="SBO:0000247" id="M_MAM03402e" name="acetaminophen/paracetamol" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H9NO2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03402e">
+            <rdf:Description rdf:about="#M_MAM03402e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/acmp"/>
@@ -126896,10 +126948,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03403r" sboTerm="SBO:0000247" id="MAM03403r" name="Acetaminophen glucuronide" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C14H16NO8">
+      <species metaid="M_MAM03403r" sboTerm="SBO:0000247" id="M_MAM03403r" name="Acetaminophen glucuronide" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C14H16NO8">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03403r">
+            <rdf:Description rdf:about="#M_MAM03403r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/acmpglu"/>
@@ -126913,10 +126965,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03404e" sboTerm="SBO:0000247" id="MAM03404e" name="acetaminophen-glutathione-conjugate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H27N4O10S">
+      <species metaid="M_MAM03404e" sboTerm="SBO:0000247" id="M_MAM03404e" name="acetaminophen-glutathione-conjugate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H27N4O10S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03404e">
+            <rdf:Description rdf:about="#M_MAM03404e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/acmpglut"/>
@@ -126928,10 +126980,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03404c" sboTerm="SBO:0000247" id="MAM03404c" name="acetaminophen-glutathione-conjugate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H27N4O10S">
+      <species metaid="M_MAM03404c" sboTerm="SBO:0000247" id="M_MAM03404c" name="acetaminophen-glutathione-conjugate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H27N4O10S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03404c">
+            <rdf:Description rdf:about="#M_MAM03404c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/acmpglut"/>
@@ -126943,10 +126995,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03403c" sboTerm="SBO:0000247" id="MAM03403c" name="Acetaminophen glucuronide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C14H16NO8">
+      <species metaid="M_MAM03403c" sboTerm="SBO:0000247" id="M_MAM03403c" name="Acetaminophen glucuronide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C14H16NO8">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03403c">
+            <rdf:Description rdf:about="#M_MAM03403c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/acmpglu"/>
@@ -126960,10 +127012,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03403e" sboTerm="SBO:0000247" id="MAM03403e" name="Acetaminophen glucuronide" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C14H16NO8">
+      <species metaid="M_MAM03403e" sboTerm="SBO:0000247" id="M_MAM03403e" name="Acetaminophen glucuronide" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C14H16NO8">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03403e">
+            <rdf:Description rdf:about="#M_MAM03403e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/acmpglu"/>
@@ -126977,10 +127029,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03958c" sboTerm="SBO:0000247" id="MAM03958c" name="sulphate-conjugate-acetaminophen" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C8H8NO5S">
+      <species metaid="M_MAM03958c" sboTerm="SBO:0000247" id="M_MAM03958c" name="sulphate-conjugate-acetaminophen" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C8H8NO5S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03958c">
+            <rdf:Description rdf:about="#M_MAM03958c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/sulpacmp"/>
@@ -126991,10 +127043,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03801c" sboTerm="SBO:0000247" id="MAM03801c" name="oxypurinol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H4N4O2">
+      <species metaid="M_MAM03801c" sboTerm="SBO:0000247" id="M_MAM03801c" name="oxypurinol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H4N4O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03801c">
+            <rdf:Description rdf:about="#M_MAM03801c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/oxyp"/>
@@ -127005,10 +127057,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03429r" sboTerm="SBO:0000247" id="MAM03429r" name="AM1 (cyclosporine)" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C62H111N11O13">
+      <species metaid="M_MAM03429r" sboTerm="SBO:0000247" id="M_MAM03429r" name="AM1 (cyclosporine)" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C62H111N11O13">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03429r">
+            <rdf:Description rdf:about="#M_MAM03429r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/am1csa"/>
@@ -127019,10 +127071,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03420r" sboTerm="SBO:0000247" id="MAM03420r" name="AM19 (cyclosporine)" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C62H111N11O14">
+      <species metaid="M_MAM03420r" sboTerm="SBO:0000247" id="M_MAM03420r" name="AM19 (cyclosporine)" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C62H111N11O14">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03420r">
+            <rdf:Description rdf:about="#M_MAM03420r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/am19cs"/>
@@ -127033,10 +127085,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03432r" sboTerm="SBO:0000247" id="MAM03432r" name="AM9 (cyclosporine)" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C62H111N11O13">
+      <species metaid="M_MAM03432r" sboTerm="SBO:0000247" id="M_MAM03432r" name="AM9 (cyclosporine)" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C62H111N11O13">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03432r">
+            <rdf:Description rdf:about="#M_MAM03432r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/am9csa"/>
@@ -127047,10 +127099,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03420c" sboTerm="SBO:0000247" id="MAM03420c" name="AM19 (cyclosporine)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C62H111N11O14">
+      <species metaid="M_MAM03420c" sboTerm="SBO:0000247" id="M_MAM03420c" name="AM19 (cyclosporine)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C62H111N11O14">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03420c">
+            <rdf:Description rdf:about="#M_MAM03420c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/am19cs"/>
@@ -127061,10 +127113,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03420e" sboTerm="SBO:0000247" id="MAM03420e" name="AM19 (cyclosporine)" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C62H111N11O14">
+      <species metaid="M_MAM03420e" sboTerm="SBO:0000247" id="M_MAM03420e" name="AM19 (cyclosporine)" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C62H111N11O14">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03420e">
+            <rdf:Description rdf:about="#M_MAM03420e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/am19cs"/>
@@ -127075,10 +127127,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03423c" sboTerm="SBO:0000247" id="MAM03423c" name="AM1A (cyclosporine)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C62H108N11O14">
+      <species metaid="M_MAM03423c" sboTerm="SBO:0000247" id="M_MAM03423c" name="AM1A (cyclosporine)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C62H108N11O14">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03423c">
+            <rdf:Description rdf:about="#M_MAM03423c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/am1acs"/>
@@ -127089,10 +127141,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03421c" sboTerm="SBO:0000247" id="MAM03421c" name="AM1A4N (cyclosporine)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C61H106N11O14">
+      <species metaid="M_MAM03421c" sboTerm="SBO:0000247" id="M_MAM03421c" name="AM1A4N (cyclosporine)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C61H106N11O14">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03421c">
+            <rdf:Description rdf:about="#M_MAM03421c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/am1a4ncs"/>
@@ -127103,10 +127155,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03421e" sboTerm="SBO:0000247" id="MAM03421e" name="AM1A4N (cyclosporine)" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C61H106N11O14">
+      <species metaid="M_MAM03421e" sboTerm="SBO:0000247" id="M_MAM03421e" name="AM1A4N (cyclosporine)" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C61H106N11O14">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03421e">
+            <rdf:Description rdf:about="#M_MAM03421e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/am1a4ncs"/>
@@ -127117,10 +127169,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03427r" sboTerm="SBO:0000247" id="MAM03427r" name="AM1c (cyclosporine)" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C62H111N11O13">
+      <species metaid="M_MAM03427r" sboTerm="SBO:0000247" id="M_MAM03427r" name="AM1c (cyclosporine)" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C62H111N11O13">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03427r">
+            <rdf:Description rdf:about="#M_MAM03427r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/am1ccs"/>
@@ -127131,10 +127183,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03422r" sboTerm="SBO:0000247" id="MAM03422r" name="AM1Ac (cyclosporine)" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C62H108N11O14">
+      <species metaid="M_MAM03422r" sboTerm="SBO:0000247" id="M_MAM03422r" name="AM1Ac (cyclosporine)" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C62H108N11O14">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03422r">
+            <rdf:Description rdf:about="#M_MAM03422r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/am1accs"/>
@@ -127145,10 +127197,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03422c" sboTerm="SBO:0000247" id="MAM03422c" name="AM1Ac (cyclosporine)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C62H108N11O14">
+      <species metaid="M_MAM03422c" sboTerm="SBO:0000247" id="M_MAM03422c" name="AM1Ac (cyclosporine)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C62H108N11O14">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03422c">
+            <rdf:Description rdf:about="#M_MAM03422c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/am1accs"/>
@@ -127159,10 +127211,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03422e" sboTerm="SBO:0000247" id="MAM03422e" name="AM1Ac (cyclosporine)" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C62H108N11O14">
+      <species metaid="M_MAM03422e" sboTerm="SBO:0000247" id="M_MAM03422e" name="AM1Ac (cyclosporine)" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C62H108N11O14">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03422e">
+            <rdf:Description rdf:about="#M_MAM03422e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/am1accs"/>
@@ -127173,10 +127225,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03424r" sboTerm="SBO:0000247" id="MAM03424r" name="AM1AL (cyclosporine)" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C62H109N11O13">
+      <species metaid="M_MAM03424r" sboTerm="SBO:0000247" id="M_MAM03424r" name="AM1AL (cyclosporine)" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C62H109N11O13">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03424r">
+            <rdf:Description rdf:about="#M_MAM03424r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/am1alcs"/>
@@ -127187,10 +127239,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03423r" sboTerm="SBO:0000247" id="MAM03423r" name="AM1A (cyclosporine)" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C62H108N11O14">
+      <species metaid="M_MAM03423r" sboTerm="SBO:0000247" id="M_MAM03423r" name="AM1A (cyclosporine)" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C62H108N11O14">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03423r">
+            <rdf:Description rdf:about="#M_MAM03423r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/am1acs"/>
@@ -127201,10 +127253,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03423e" sboTerm="SBO:0000247" id="MAM03423e" name="AM1A (cyclosporine)" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C62H108N11O14">
+      <species metaid="M_MAM03423e" sboTerm="SBO:0000247" id="M_MAM03423e" name="AM1A (cyclosporine)" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C62H108N11O14">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03423e">
+            <rdf:Description rdf:about="#M_MAM03423e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/am1acs"/>
@@ -127215,10 +127267,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03429c" sboTerm="SBO:0000247" id="MAM03429c" name="AM1 (cyclosporine)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C62H111N11O13">
+      <species metaid="M_MAM03429c" sboTerm="SBO:0000247" id="M_MAM03429c" name="AM1 (cyclosporine)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C62H111N11O13">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03429c">
+            <rdf:Description rdf:about="#M_MAM03429c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/am1csa"/>
@@ -127229,10 +127281,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03424c" sboTerm="SBO:0000247" id="MAM03424c" name="AM1AL (cyclosporine)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C62H109N11O13">
+      <species metaid="M_MAM03424c" sboTerm="SBO:0000247" id="M_MAM03424c" name="AM1AL (cyclosporine)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C62H109N11O13">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03424c">
+            <rdf:Description rdf:about="#M_MAM03424c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/am1alcs"/>
@@ -127243,10 +127295,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03424e" sboTerm="SBO:0000247" id="MAM03424e" name="AM1AL (cyclosporine)" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C62H109N11O13">
+      <species metaid="M_MAM03424e" sboTerm="SBO:0000247" id="M_MAM03424e" name="AM1AL (cyclosporine)" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C62H109N11O13">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03424e">
+            <rdf:Description rdf:about="#M_MAM03424e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/am1alcs"/>
@@ -127257,10 +127309,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03426c" sboTerm="SBO:0000247" id="MAM03426c" name="AM1c9 (cyclosporine)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C62H111N11O14">
+      <species metaid="M_MAM03426c" sboTerm="SBO:0000247" id="M_MAM03426c" name="AM1c9 (cyclosporine)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C62H111N11O14">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03426c">
+            <rdf:Description rdf:about="#M_MAM03426c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/am1c9cs"/>
@@ -127271,10 +127323,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03425c" sboTerm="SBO:0000247" id="MAM03425c" name="AM1c4N9 (cyclosporine)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C61H109N11O14">
+      <species metaid="M_MAM03425c" sboTerm="SBO:0000247" id="M_MAM03425c" name="AM1c4N9 (cyclosporine)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C61H109N11O14">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03425c">
+            <rdf:Description rdf:about="#M_MAM03425c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/am1c4n9cs"/>
@@ -127285,10 +127337,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03425e" sboTerm="SBO:0000247" id="MAM03425e" name="AM1c4N9 (cyclosporine)" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C61H109N11O14">
+      <species metaid="M_MAM03425e" sboTerm="SBO:0000247" id="M_MAM03425e" name="AM1c4N9 (cyclosporine)" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C61H109N11O14">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03425e">
+            <rdf:Description rdf:about="#M_MAM03425e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/am1c4n9cs"/>
@@ -127299,10 +127351,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03426r" sboTerm="SBO:0000247" id="MAM03426r" name="AM1c9 (cyclosporine)" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C62H111N11O14">
+      <species metaid="M_MAM03426r" sboTerm="SBO:0000247" id="M_MAM03426r" name="AM1c9 (cyclosporine)" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C62H111N11O14">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03426r">
+            <rdf:Description rdf:about="#M_MAM03426r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/am1c9cs"/>
@@ -127313,10 +127365,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03426e" sboTerm="SBO:0000247" id="MAM03426e" name="AM1c9 (cyclosporine)" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C62H111N11O14">
+      <species metaid="M_MAM03426e" sboTerm="SBO:0000247" id="M_MAM03426e" name="AM1c9 (cyclosporine)" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C62H111N11O14">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03426e">
+            <rdf:Description rdf:about="#M_MAM03426e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/am1c9cs"/>
@@ -127327,10 +127379,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03520r" sboTerm="SBO:0000247" id="MAM03520r" name="cyclosporine" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C62H111N11O12">
+      <species metaid="M_MAM03520r" sboTerm="SBO:0000247" id="M_MAM03520r" name="cyclosporine" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C62H111N11O12">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03520r">
+            <rdf:Description rdf:about="#M_MAM03520r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/csa"/>
@@ -127341,10 +127393,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03427c" sboTerm="SBO:0000247" id="MAM03427c" name="AM1c (cyclosporine)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C62H111N11O13">
+      <species metaid="M_MAM03427c" sboTerm="SBO:0000247" id="M_MAM03427c" name="AM1c (cyclosporine)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C62H111N11O13">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03427c">
+            <rdf:Description rdf:about="#M_MAM03427c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/am1ccs"/>
@@ -127355,10 +127407,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03427e" sboTerm="SBO:0000247" id="MAM03427e" name="AM1c (cyclosporine)" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C62H111N11O13">
+      <species metaid="M_MAM03427e" sboTerm="SBO:0000247" id="M_MAM03427e" name="AM1c (cyclosporine)" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C62H111N11O13">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03427e">
+            <rdf:Description rdf:about="#M_MAM03427e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/am1ccs"/>
@@ -127369,10 +127421,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03428r" sboTerm="SBO:0000247" id="MAM03428r" name="AM1c-glucuronide (cyclosporine)" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C68H118N11O19">
+      <species metaid="M_MAM03428r" sboTerm="SBO:0000247" id="M_MAM03428r" name="AM1c-glucuronide (cyclosporine)" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C68H118N11O19">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03428r">
+            <rdf:Description rdf:about="#M_MAM03428r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/am1cglc"/>
@@ -127383,10 +127435,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03428c" sboTerm="SBO:0000247" id="MAM03428c" name="AM1c-glucuronide (cyclosporine)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C68H118N11O19">
+      <species metaid="M_MAM03428c" sboTerm="SBO:0000247" id="M_MAM03428c" name="AM1c-glucuronide (cyclosporine)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C68H118N11O19">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03428c">
+            <rdf:Description rdf:about="#M_MAM03428c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/am1cglc"/>
@@ -127397,10 +127449,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03428e" sboTerm="SBO:0000247" id="MAM03428e" name="AM1c-glucuronide (cyclosporine)" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C68H118N11O19">
+      <species metaid="M_MAM03428e" sboTerm="SBO:0000247" id="M_MAM03428e" name="AM1c-glucuronide (cyclosporine)" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C68H118N11O19">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03428e">
+            <rdf:Description rdf:about="#M_MAM03428e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/am1cglc"/>
@@ -127411,10 +127463,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03429e" sboTerm="SBO:0000247" id="MAM03429e" name="AM1 (cyclosporine)" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C62H111N11O13">
+      <species metaid="M_MAM03429e" sboTerm="SBO:0000247" id="M_MAM03429e" name="AM1 (cyclosporine)" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C62H111N11O13">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03429e">
+            <rdf:Description rdf:about="#M_MAM03429e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/am1csa"/>
@@ -127425,10 +127477,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03432c" sboTerm="SBO:0000247" id="MAM03432c" name="AM9 (cyclosporine)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C62H111N11O13">
+      <species metaid="M_MAM03432c" sboTerm="SBO:0000247" id="M_MAM03432c" name="AM9 (cyclosporine)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C62H111N11O13">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03432c">
+            <rdf:Description rdf:about="#M_MAM03432c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/am9csa"/>
@@ -127439,10 +127491,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03430c" sboTerm="SBO:0000247" id="MAM03430c" name="AM4N9 (cyclosporine)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C61H109N11O13">
+      <species metaid="M_MAM03430c" sboTerm="SBO:0000247" id="M_MAM03430c" name="AM4N9 (cyclosporine)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C61H109N11O13">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03430c">
+            <rdf:Description rdf:about="#M_MAM03430c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/am4n9cs"/>
@@ -127453,10 +127505,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03431r" sboTerm="SBO:0000247" id="MAM03431r" name="AM4N (cyclosporine)" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C61H109N11O12">
+      <species metaid="M_MAM03431r" sboTerm="SBO:0000247" id="M_MAM03431r" name="AM4N (cyclosporine)" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C61H109N11O12">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03431r">
+            <rdf:Description rdf:about="#M_MAM03431r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/am4ncs"/>
@@ -127467,10 +127519,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03430r" sboTerm="SBO:0000247" id="MAM03430r" name="AM4N9 (cyclosporine)" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C61H109N11O13">
+      <species metaid="M_MAM03430r" sboTerm="SBO:0000247" id="M_MAM03430r" name="AM4N9 (cyclosporine)" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C61H109N11O13">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03430r">
+            <rdf:Description rdf:about="#M_MAM03430r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/am4n9cs"/>
@@ -127481,10 +127533,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03430e" sboTerm="SBO:0000247" id="MAM03430e" name="AM4N9 (cyclosporine)" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C61H109N11O13">
+      <species metaid="M_MAM03430e" sboTerm="SBO:0000247" id="M_MAM03430e" name="AM4N9 (cyclosporine)" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C61H109N11O13">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03430e">
+            <rdf:Description rdf:about="#M_MAM03430e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/am4n9cs"/>
@@ -127495,10 +127547,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03520c" sboTerm="SBO:0000247" id="MAM03520c" name="cyclosporine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C62H111N11O12">
+      <species metaid="M_MAM03520c" sboTerm="SBO:0000247" id="M_MAM03520c" name="cyclosporine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C62H111N11O12">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03520c">
+            <rdf:Description rdf:about="#M_MAM03520c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/csa"/>
@@ -127509,10 +127561,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03431c" sboTerm="SBO:0000247" id="MAM03431c" name="AM4N (cyclosporine)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C61H109N11O12">
+      <species metaid="M_MAM03431c" sboTerm="SBO:0000247" id="M_MAM03431c" name="AM4N (cyclosporine)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C61H109N11O12">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03431c">
+            <rdf:Description rdf:about="#M_MAM03431c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/am4ncs"/>
@@ -127523,10 +127575,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03431e" sboTerm="SBO:0000247" id="MAM03431e" name="AM4N (cyclosporine)" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C61H109N11O12">
+      <species metaid="M_MAM03431e" sboTerm="SBO:0000247" id="M_MAM03431e" name="AM4N (cyclosporine)" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C61H109N11O12">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03431e">
+            <rdf:Description rdf:about="#M_MAM03431e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/am4ncs"/>
@@ -127537,10 +127589,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03432e" sboTerm="SBO:0000247" id="MAM03432e" name="AM9 (cyclosporine)" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C62H111N11O13">
+      <species metaid="M_MAM03432e" sboTerm="SBO:0000247" id="M_MAM03432e" name="AM9 (cyclosporine)" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C62H111N11O13">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03432e">
+            <rdf:Description rdf:about="#M_MAM03432e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/am9csa"/>
@@ -127551,10 +127603,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03476e" sboTerm="SBO:0000247" id="MAM03476e" name="atorvastatin-acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C33H34FN2O5">
+      <species metaid="M_MAM03476e" sboTerm="SBO:0000247" id="M_MAM03476e" name="atorvastatin-acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C33H34FN2O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03476e">
+            <rdf:Description rdf:about="#M_MAM03476e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/atvacid"/>
@@ -127565,10 +127617,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03476c" sboTerm="SBO:0000247" id="MAM03476c" name="atorvastatin-acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C33H34FN2O5">
+      <species metaid="M_MAM03476c" sboTerm="SBO:0000247" id="M_MAM03476c" name="atorvastatin-acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C33H34FN2O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03476c">
+            <rdf:Description rdf:about="#M_MAM03476c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/atvacid"/>
@@ -127579,10 +127631,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03479c" sboTerm="SBO:0000247" id="MAM03479c" name="atorvastatin-lactone" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C33H33FN2O4">
+      <species metaid="M_MAM03479c" sboTerm="SBO:0000247" id="M_MAM03479c" name="atorvastatin-lactone" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C33H33FN2O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03479c">
+            <rdf:Description rdf:about="#M_MAM03479c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/atvlac"/>
@@ -127593,10 +127645,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03478r" sboTerm="SBO:0000247" id="MAM03478r" name="atorvastatin-ether-glucuronide -G1" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C45H48FN2O17">
+      <species metaid="M_MAM03478r" sboTerm="SBO:0000247" id="M_MAM03478r" name="atorvastatin-ether-glucuronide -G1" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C45H48FN2O17">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03478r">
+            <rdf:Description rdf:about="#M_MAM03478r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/atvethgluc"/>
@@ -127607,10 +127659,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03477r" sboTerm="SBO:0000247" id="MAM03477r" name="atorvastatin-acyl-glucuronide / G2" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C39H42FN2O11">
+      <species metaid="M_MAM03477r" sboTerm="SBO:0000247" id="M_MAM03477r" name="atorvastatin-acyl-glucuronide / G2" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C39H42FN2O11">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03477r">
+            <rdf:Description rdf:about="#M_MAM03477r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/atvacylgluc"/>
@@ -127621,10 +127673,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03480r" sboTerm="SBO:0000247" id="MAM03480r" name="atorvastatin-lactone-ether-glucuronide / G3" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C39H40FN2O10">
+      <species metaid="M_MAM03480r" sboTerm="SBO:0000247" id="M_MAM03480r" name="atorvastatin-lactone-ether-glucuronide / G3" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C39H40FN2O10">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03480r">
+            <rdf:Description rdf:about="#M_MAM03480r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/atvlacgluc"/>
@@ -127635,10 +127687,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03479e" sboTerm="SBO:0000247" id="MAM03479e" name="atorvastatin-lactone" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C33H33FN2O4">
+      <species metaid="M_MAM03479e" sboTerm="SBO:0000247" id="M_MAM03479e" name="atorvastatin-lactone" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C33H33FN2O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03479e">
+            <rdf:Description rdf:about="#M_MAM03479e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/atvlac"/>
@@ -127649,10 +127701,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03507c" sboTerm="SBO:0000247" id="MAM03507c" name="S-carboxy ibuprofen glucuronide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C19H22O10">
+      <species metaid="M_MAM03507c" sboTerm="SBO:0000247" id="M_MAM03507c" name="S-carboxy ibuprofen glucuronide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C19H22O10">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03507c">
+            <rdf:Description rdf:about="#M_MAM03507c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/caribupglu_S"/>
@@ -127662,10 +127714,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03507e" sboTerm="SBO:0000247" id="MAM03507e" name="S-carboxy ibuprofen glucuronide" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C19H22O10">
+      <species metaid="M_MAM03507e" sboTerm="SBO:0000247" id="M_MAM03507e" name="S-carboxy ibuprofen glucuronide" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C19H22O10">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03507e">
+            <rdf:Description rdf:about="#M_MAM03507e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/caribupglu_S"/>
@@ -127675,10 +127727,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03505c" sboTerm="SBO:0000247" id="MAM03505c" name="R-carboxy ibuprofen" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C13H14O4">
+      <species metaid="M_MAM03505c" sboTerm="SBO:0000247" id="M_MAM03505c" name="R-carboxy ibuprofen" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C13H14O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03505c">
+            <rdf:Description rdf:about="#M_MAM03505c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/caribup_R"/>
@@ -127688,10 +127740,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03505e" sboTerm="SBO:0000247" id="MAM03505e" name="R-carboxy ibuprofen" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C13H14O4">
+      <species metaid="M_MAM03505e" sboTerm="SBO:0000247" id="M_MAM03505e" name="R-carboxy ibuprofen" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C13H14O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03505e">
+            <rdf:Description rdf:about="#M_MAM03505e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/caribup_R"/>
@@ -127701,10 +127753,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03506r" sboTerm="SBO:0000247" id="MAM03506r" name="S-carboxy ibuprofen" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C13H14O4">
+      <species metaid="M_MAM03506r" sboTerm="SBO:0000247" id="M_MAM03506r" name="S-carboxy ibuprofen" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C13H14O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03506r">
+            <rdf:Description rdf:about="#M_MAM03506r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/caribup_s"/>
@@ -127715,10 +127767,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03507r" sboTerm="SBO:0000247" id="MAM03507r" name="S-carboxy ibuprofen glucuronide" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C19H22O10">
+      <species metaid="M_MAM03507r" sboTerm="SBO:0000247" id="M_MAM03507r" name="S-carboxy ibuprofen glucuronide" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C19H22O10">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03507r">
+            <rdf:Description rdf:about="#M_MAM03507r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/caribupglu_S"/>
@@ -127728,10 +127780,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03506c" sboTerm="SBO:0000247" id="MAM03506c" name="S-carboxy ibuprofen" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C13H14O4">
+      <species metaid="M_MAM03506c" sboTerm="SBO:0000247" id="M_MAM03506c" name="S-carboxy ibuprofen" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C13H14O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03506c">
+            <rdf:Description rdf:about="#M_MAM03506c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/caribup_s"/>
@@ -127742,10 +127794,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03506e" sboTerm="SBO:0000247" id="MAM03506e" name="S-carboxy ibuprofen" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C13H14O4">
+      <species metaid="M_MAM03506e" sboTerm="SBO:0000247" id="M_MAM03506e" name="S-carboxy ibuprofen" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C13H14O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03506e">
+            <rdf:Description rdf:about="#M_MAM03506e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/caribup_s"/>
@@ -127756,10 +127808,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03513c" sboTerm="SBO:0000247" id="MAM03513c" name="carboxy-gliclazide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C15H17N3O5S">
+      <species metaid="M_MAM03513c" sboTerm="SBO:0000247" id="M_MAM03513c" name="carboxy-gliclazide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C15H17N3O5S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03513c">
+            <rdf:Description rdf:about="#M_MAM03513c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/crglz"/>
@@ -127770,10 +127822,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03513e" sboTerm="SBO:0000247" id="MAM03513e" name="carboxy-gliclazide" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C15H17N3O5S">
+      <species metaid="M_MAM03513e" sboTerm="SBO:0000247" id="M_MAM03513e" name="carboxy-gliclazide" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C15H17N3O5S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03513e">
+            <rdf:Description rdf:about="#M_MAM03513e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/crglz"/>
@@ -127784,10 +127836,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03770r" sboTerm="SBO:0000247" id="MAM03770r" name="Methyl-hydroxy-gliclazide" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C15H20N3O4S">
+      <species metaid="M_MAM03770r" sboTerm="SBO:0000247" id="M_MAM03770r" name="Methyl-hydroxy-gliclazide" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C15H20N3O4S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03770r">
+            <rdf:Description rdf:about="#M_MAM03770r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/mhglz"/>
@@ -127798,10 +127850,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03513r" sboTerm="SBO:0000247" id="MAM03513r" name="carboxy-gliclazide" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C15H17N3O5S">
+      <species metaid="M_MAM03513r" sboTerm="SBO:0000247" id="M_MAM03513r" name="carboxy-gliclazide" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C15H17N3O5S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03513r">
+            <rdf:Description rdf:about="#M_MAM03513r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/crglz"/>
@@ -127812,10 +127864,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03515r" sboTerm="SBO:0000247" id="MAM03515r" name="cerivastatin-M1" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C24H29FNNaO5">
+      <species metaid="M_MAM03515r" sboTerm="SBO:0000247" id="M_MAM03515r" name="cerivastatin-M1" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C24H29FNNaO5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03515r">
+            <rdf:Description rdf:about="#M_MAM03515r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/crvsm1"/>
@@ -127826,10 +127878,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03518r" sboTerm="SBO:0000247" id="MAM03518r" name="cerivastatin-M24" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C24H29FNNaO6">
+      <species metaid="M_MAM03518r" sboTerm="SBO:0000247" id="M_MAM03518r" name="cerivastatin-M24" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C24H29FNNaO6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03518r">
+            <rdf:Description rdf:about="#M_MAM03518r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/crvsm24"/>
@@ -127840,10 +127892,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03515c" sboTerm="SBO:0000247" id="MAM03515c" name="cerivastatin-M1" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C24H29FNNaO5">
+      <species metaid="M_MAM03515c" sboTerm="SBO:0000247" id="M_MAM03515c" name="cerivastatin-M1" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C24H29FNNaO5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03515c">
+            <rdf:Description rdf:about="#M_MAM03515c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/crvsm1"/>
@@ -127854,10 +127906,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03515e" sboTerm="SBO:0000247" id="MAM03515e" name="cerivastatin-M1" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C24H29FNNaO5">
+      <species metaid="M_MAM03515e" sboTerm="SBO:0000247" id="M_MAM03515e" name="cerivastatin-M1" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C24H29FNNaO5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03515e">
+            <rdf:Description rdf:about="#M_MAM03515e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/crvsm1"/>
@@ -127868,10 +127920,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03517r" sboTerm="SBO:0000247" id="MAM03517r" name="cerivastatin-M23" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H31FNNaO6">
+      <species metaid="M_MAM03517r" sboTerm="SBO:0000247" id="M_MAM03517r" name="cerivastatin-M23" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H31FNNaO6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03517r">
+            <rdf:Description rdf:about="#M_MAM03517r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/crvsm23"/>
@@ -127882,10 +127934,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03514e" sboTerm="SBO:0000247" id="MAM03514e" name="cerivastatin" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H31FNNaO5">
+      <species metaid="M_MAM03514e" sboTerm="SBO:0000247" id="M_MAM03514e" name="cerivastatin" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H31FNNaO5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03514e">
+            <rdf:Description rdf:about="#M_MAM03514e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/crvs"/>
@@ -127896,10 +127948,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03514c" sboTerm="SBO:0000247" id="MAM03514c" name="cerivastatin" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H31FNNaO5">
+      <species metaid="M_MAM03514c" sboTerm="SBO:0000247" id="M_MAM03514c" name="cerivastatin" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H31FNNaO5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03514c">
+            <rdf:Description rdf:about="#M_MAM03514c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/crvs"/>
@@ -127910,10 +127962,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03516c" sboTerm="SBO:0000247" id="MAM03516c" name="cerivastatin-M22" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H29FNNaO4">
+      <species metaid="M_MAM03516c" sboTerm="SBO:0000247" id="M_MAM03516c" name="cerivastatin-M22" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H29FNNaO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03516c">
+            <rdf:Description rdf:about="#M_MAM03516c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/crvsm22"/>
@@ -127924,10 +127976,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03514r" sboTerm="SBO:0000247" id="MAM03514r" name="cerivastatin" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H31FNNaO5">
+      <species metaid="M_MAM03514r" sboTerm="SBO:0000247" id="M_MAM03514r" name="cerivastatin" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H31FNNaO5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03514r">
+            <rdf:Description rdf:about="#M_MAM03514r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/crvs"/>
@@ -127938,10 +127990,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03523r" sboTerm="SBO:0000247" id="MAM03523r" name="cerivastatin-M1-glucuronide" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C30H36FNNaO11">
+      <species metaid="M_MAM03523r" sboTerm="SBO:0000247" id="M_MAM03523r" name="cerivastatin-M1-glucuronide" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C30H36FNNaO11">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03523r">
+            <rdf:Description rdf:about="#M_MAM03523r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/cvm1gluc"/>
@@ -127952,10 +128004,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03516r" sboTerm="SBO:0000247" id="MAM03516r" name="cerivastatin-M22" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H29FNNaO4">
+      <species metaid="M_MAM03516r" sboTerm="SBO:0000247" id="M_MAM03516r" name="cerivastatin-M22" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H29FNNaO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03516r">
+            <rdf:Description rdf:about="#M_MAM03516r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/crvsm22"/>
@@ -127966,10 +128018,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03524r" sboTerm="SBO:0000247" id="MAM03524r" name="cerivastatin-M23-glucuronide" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C31H38FNNaO12">
+      <species metaid="M_MAM03524r" sboTerm="SBO:0000247" id="M_MAM03524r" name="cerivastatin-M23-glucuronide" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C31H38FNNaO12">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03524r">
+            <rdf:Description rdf:about="#M_MAM03524r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/cvm23gluc"/>
@@ -127980,10 +128032,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03517c" sboTerm="SBO:0000247" id="MAM03517c" name="cerivastatin-M23" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H31FNNaO6">
+      <species metaid="M_MAM03517c" sboTerm="SBO:0000247" id="M_MAM03517c" name="cerivastatin-M23" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H31FNNaO6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03517c">
+            <rdf:Description rdf:about="#M_MAM03517c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/crvsm23"/>
@@ -127994,10 +128046,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03517e" sboTerm="SBO:0000247" id="MAM03517e" name="cerivastatin-M23" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H31FNNaO6">
+      <species metaid="M_MAM03517e" sboTerm="SBO:0000247" id="M_MAM03517e" name="cerivastatin-M23" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H31FNNaO6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03517e">
+            <rdf:Description rdf:about="#M_MAM03517e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/crvsm23"/>
@@ -128008,10 +128060,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03518c" sboTerm="SBO:0000247" id="MAM03518c" name="cerivastatin-M24" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C24H29FNNaO6">
+      <species metaid="M_MAM03518c" sboTerm="SBO:0000247" id="M_MAM03518c" name="cerivastatin-M24" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C24H29FNNaO6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03518c">
+            <rdf:Description rdf:about="#M_MAM03518c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/crvsm24"/>
@@ -128022,10 +128074,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03518e" sboTerm="SBO:0000247" id="MAM03518e" name="cerivastatin-M24" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C24H29FNNaO6">
+      <species metaid="M_MAM03518e" sboTerm="SBO:0000247" id="M_MAM03518e" name="cerivastatin-M24" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C24H29FNNaO6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03518e">
+            <rdf:Description rdf:about="#M_MAM03518e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/crvsm24"/>
@@ -128036,10 +128088,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03519r" sboTerm="SBO:0000247" id="MAM03519r" name="cerivastatin-M31" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C26H31FNNaO5">
+      <species metaid="M_MAM03519r" sboTerm="SBO:0000247" id="M_MAM03519r" name="cerivastatin-M31" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C26H31FNNaO5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03519r">
+            <rdf:Description rdf:about="#M_MAM03519r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/crvsm31"/>
@@ -128050,10 +128102,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03521c" sboTerm="SBO:0000247" id="MAM03521c" name="cyclosporine-sulphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C62H110N11O15S">
+      <species metaid="M_MAM03521c" sboTerm="SBO:0000247" id="M_MAM03521c" name="cyclosporine-sulphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C62H110N11O15S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03521c">
+            <rdf:Description rdf:about="#M_MAM03521c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/csasulp"/>
@@ -128064,10 +128116,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03521e" sboTerm="SBO:0000247" id="MAM03521e" name="cyclosporine-sulphate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C62H110N11O15S">
+      <species metaid="M_MAM03521e" sboTerm="SBO:0000247" id="M_MAM03521e" name="cyclosporine-sulphate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C62H110N11O15S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03521e">
+            <rdf:Description rdf:about="#M_MAM03521e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/csasulp"/>
@@ -128078,10 +128130,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03520e" sboTerm="SBO:0000247" id="MAM03520e" name="cyclosporine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C62H111N11O12">
+      <species metaid="M_MAM03520e" sboTerm="SBO:0000247" id="M_MAM03520e" name="cyclosporine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C62H111N11O12">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03520e">
+            <rdf:Description rdf:about="#M_MAM03520e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/csa"/>
@@ -128092,10 +128144,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03526c" sboTerm="SBO:0000247" id="MAM03526c" name="cysteine-conjugate-acetaminophen" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C11H14N2O4S">
+      <species metaid="M_MAM03526c" sboTerm="SBO:0000247" id="M_MAM03526c" name="cysteine-conjugate-acetaminophen" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C11H14N2O4S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03526c">
+            <rdf:Description rdf:about="#M_MAM03526c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/cysacmp"/>
@@ -128106,10 +128158,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03759c" sboTerm="SBO:0000247" id="MAM03759c" name="acetaminophen-mercapturate-conjugate/N-acetyl-cysteine-acetaminophen" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C13H15N2O5S">
+      <species metaid="M_MAM03759c" sboTerm="SBO:0000247" id="M_MAM03759c" name="acetaminophen-mercapturate-conjugate/N-acetyl-cysteine-acetaminophen" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C13H15N2O5S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03759c">
+            <rdf:Description rdf:about="#M_MAM03759c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/meracmp"/>
@@ -128120,10 +128172,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03526e" sboTerm="SBO:0000247" id="MAM03526e" name="cysteine-conjugate-acetaminophen" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C11H14N2O4S">
+      <species metaid="M_MAM03526e" sboTerm="SBO:0000247" id="M_MAM03526e" name="cysteine-conjugate-acetaminophen" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C11H14N2O4S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03526e">
+            <rdf:Description rdf:about="#M_MAM03526e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/cysacmp"/>
@@ -128134,10 +128186,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03519c" sboTerm="SBO:0000247" id="MAM03519c" name="cerivastatin-M31" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C26H31FNNaO5">
+      <species metaid="M_MAM03519c" sboTerm="SBO:0000247" id="M_MAM03519c" name="cerivastatin-M31" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C26H31FNNaO5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03519c">
+            <rdf:Description rdf:about="#M_MAM03519c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/crvsm31"/>
@@ -128148,10 +128200,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03579x" sboTerm="SBO:0000247" id="MAM03579x" name="fluvastatin" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C24H25FNNaO4">
+      <species metaid="M_MAM03579x" sboTerm="SBO:0000247" id="M_MAM03579x" name="fluvastatin" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C24H25FNNaO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03579x">
+            <rdf:Description rdf:about="#M_MAM03579x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/fvs"/>
@@ -128162,10 +128214,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03546x" sboTerm="SBO:0000247" id="MAM03546x" name="deoxy-fluvastatin-dinor" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C22H21FNNaO2">
+      <species metaid="M_MAM03546x" sboTerm="SBO:0000247" id="M_MAM03546x" name="deoxy-fluvastatin-dinor" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C22H21FNNaO2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03546x">
+            <rdf:Description rdf:about="#M_MAM03546x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/deoxfvs"/>
@@ -128176,10 +128228,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03546c" sboTerm="SBO:0000247" id="MAM03546c" name="deoxy-fluvastatin-dinor" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C22H21FNNaO2">
+      <species metaid="M_MAM03546c" sboTerm="SBO:0000247" id="M_MAM03546c" name="deoxy-fluvastatin-dinor" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C22H21FNNaO2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03546c">
+            <rdf:Description rdf:about="#M_MAM03546c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/deoxfvs"/>
@@ -128190,10 +128242,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03546e" sboTerm="SBO:0000247" id="MAM03546e" name="deoxy-fluvastatin-dinor" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C22H21FNNaO2">
+      <species metaid="M_MAM03546e" sboTerm="SBO:0000247" id="M_MAM03546e" name="deoxy-fluvastatin-dinor" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C22H21FNNaO2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03546e">
+            <rdf:Description rdf:about="#M_MAM03546e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/deoxfvs"/>
@@ -128204,10 +128256,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03547r" sboTerm="SBO:0000247" id="MAM03547r" name="N-desisopropyl-fluvastatin" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H19FNNaO4">
+      <species metaid="M_MAM03547r" sboTerm="SBO:0000247" id="M_MAM03547r" name="N-desisopropyl-fluvastatin" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H19FNNaO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03547r">
+            <rdf:Description rdf:about="#M_MAM03547r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/desfvs"/>
@@ -128218,10 +128270,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03547c" sboTerm="SBO:0000247" id="MAM03547c" name="N-desisopropyl-fluvastatin" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H19FNNaO4">
+      <species metaid="M_MAM03547c" sboTerm="SBO:0000247" id="M_MAM03547c" name="N-desisopropyl-fluvastatin" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H19FNNaO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03547c">
+            <rdf:Description rdf:about="#M_MAM03547c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/desfvs"/>
@@ -128232,10 +128284,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03547e" sboTerm="SBO:0000247" id="MAM03547e" name="N-desisopropyl-fluvastatin" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H19FNNaO4">
+      <species metaid="M_MAM03547e" sboTerm="SBO:0000247" id="M_MAM03547e" name="N-desisopropyl-fluvastatin" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H19FNNaO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03547e">
+            <rdf:Description rdf:about="#M_MAM03547e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/desfvs"/>
@@ -128246,10 +128298,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03549c" sboTerm="SBO:0000247" id="MAM03549c" name="dehydro-gliclazide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C15H18N3O3S">
+      <species metaid="M_MAM03549c" sboTerm="SBO:0000247" id="M_MAM03549c" name="dehydro-gliclazide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C15H18N3O3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03549c">
+            <rdf:Description rdf:about="#M_MAM03549c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dhglz"/>
@@ -128260,10 +128312,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03549e" sboTerm="SBO:0000247" id="MAM03549e" name="dehydro-gliclazide" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C15H18N3O3S">
+      <species metaid="M_MAM03549e" sboTerm="SBO:0000247" id="M_MAM03549e" name="dehydro-gliclazide" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C15H18N3O3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03549e">
+            <rdf:Description rdf:about="#M_MAM03549e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dhglz"/>
@@ -128274,10 +128326,10 @@
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-      <species metaid="MAM03634c" sboTerm="SBO:0000247" id="MAM03634c" name="Gliclazide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C15H20N3O3S">
+      <species metaid="M_MAM03634c" sboTerm="SBO:0000247" id="M_MAM03634c" name="Gliclazide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C15H20N3O3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03634c">
+            <rdf:Description rdf:about="#M_MAM03634c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/glz"/>
@@ -128288,10 +128340,10 @@
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         </annotation>
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-      <species metaid="MAM03566r" sboTerm="SBO:0000247" id="MAM03566r" name="desacyl dehydro-pravastatin" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H23NaO5">
+      <species metaid="M_MAM03566r" sboTerm="SBO:0000247" id="M_MAM03566r" name="desacyl dehydro-pravastatin" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H23NaO5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03566r">
+            <rdf:Description rdf:about="#M_MAM03566r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dspvs"/>
@@ -128302,10 +128354,10 @@
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         </annotation>
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-      <species metaid="MAM03566c" sboTerm="SBO:0000247" id="MAM03566c" name="desacyl dehydro-pravastatin" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H23NaO5">
+      <species metaid="M_MAM03566c" sboTerm="SBO:0000247" id="M_MAM03566c" name="desacyl dehydro-pravastatin" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H23NaO5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03566c">
+            <rdf:Description rdf:about="#M_MAM03566c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dspvs"/>
@@ -128316,10 +128368,10 @@
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         </annotation>
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-      <species metaid="MAM03566e" sboTerm="SBO:0000247" id="MAM03566e" name="desacyl dehydro-pravastatin" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H23NaO5">
+      <species metaid="M_MAM03566e" sboTerm="SBO:0000247" id="M_MAM03566e" name="desacyl dehydro-pravastatin" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H23NaO5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03566e">
+            <rdf:Description rdf:about="#M_MAM03566e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/dspvs"/>
@@ -128330,10 +128382,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM03572r" sboTerm="SBO:0000247" id="MAM03572r" name="31-O-Desmethyl,19-Hydroxy,37, 39-Epoxy-tacrolimus" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C41H63NO14">
+      <species metaid="M_MAM03572r" sboTerm="SBO:0000247" id="M_MAM03572r" name="31-O-Desmethyl,19-Hydroxy,37, 39-Epoxy-tacrolimus" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C41H63NO14">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03572r">
+            <rdf:Description rdf:about="#M_MAM03572r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/epoxtac"/>
@@ -128344,10 +128396,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03572c" sboTerm="SBO:0000247" id="MAM03572c" name="31-O-Desmethyl,19-Hydroxy,37, 39-Epoxy-tacrolimus" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C41H63NO14">
+      <species metaid="M_MAM03572c" sboTerm="SBO:0000247" id="M_MAM03572c" name="31-O-Desmethyl,19-Hydroxy,37, 39-Epoxy-tacrolimus" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C41H63NO14">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03572c">
+            <rdf:Description rdf:about="#M_MAM03572c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/epoxtac"/>
@@ -128358,10 +128410,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM03572e" sboTerm="SBO:0000247" id="MAM03572e" name="31-O-Desmethyl,19-Hydroxy,37, 39-Epoxy-tacrolimus" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C41H63NO14">
+      <species metaid="M_MAM03572e" sboTerm="SBO:0000247" id="M_MAM03572e" name="31-O-Desmethyl,19-Hydroxy,37, 39-Epoxy-tacrolimus" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C41H63NO14">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03572e">
+            <rdf:Description rdf:about="#M_MAM03572e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/epoxtac"/>
@@ -128372,10 +128424,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03579e" sboTerm="SBO:0000247" id="MAM03579e" name="fluvastatin" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C24H25FNNaO4">
+      <species metaid="M_MAM03579e" sboTerm="SBO:0000247" id="M_MAM03579e" name="fluvastatin" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C24H25FNNaO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03579e">
+            <rdf:Description rdf:about="#M_MAM03579e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/fvs"/>
@@ -128386,10 +128438,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03582e" sboTerm="SBO:0000247" id="MAM03582e" name="des-isopropyl-dihydro-fluvastatin-tetranor" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C17H13FNNaO2">
+      <species metaid="M_MAM03582e" sboTerm="SBO:0000247" id="M_MAM03582e" name="des-isopropyl-dihydro-fluvastatin-tetranor" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C17H13FNNaO2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03582e">
+            <rdf:Description rdf:about="#M_MAM03582e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/fvstet"/>
@@ -128400,10 +128452,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03583e" sboTerm="SBO:0000247" id="MAM03583e" name="des-isopropyl-dihydro-fluvastatin-tetranor-glucuronide" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C23H20FNNaO8">
+      <species metaid="M_MAM03583e" sboTerm="SBO:0000247" id="M_MAM03583e" name="des-isopropyl-dihydro-fluvastatin-tetranor-glucuronide" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C23H20FNNaO8">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03583e">
+            <rdf:Description rdf:about="#M_MAM03583e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/fvstetglu"/>
@@ -128414,10 +128466,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03594e" sboTerm="SBO:0000247" id="MAM03594e" name="glucuronide-conjugate of 3-methoxy-acetaminophen" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C14H16NO9">
+      <species metaid="M_MAM03594e" sboTerm="SBO:0000247" id="M_MAM03594e" name="glucuronide-conjugate of 3-methoxy-acetaminophen" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C14H16NO9">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03594e">
+            <rdf:Description rdf:about="#M_MAM03594e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/glc3meacp"/>
@@ -128428,10 +128480,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03634e" sboTerm="SBO:0000247" id="MAM03634e" name="Gliclazide" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C15H20N3O3S">
+      <species metaid="M_MAM03634e" sboTerm="SBO:0000247" id="M_MAM03634e" name="Gliclazide" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C15H20N3O3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03634e">
+            <rdf:Description rdf:about="#M_MAM03634e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/glz"/>
@@ -128442,10 +128494,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03636e" sboTerm="SBO:0000247" id="MAM03636e" name="glucuronide-thiomethyl-acetaminophen conjugate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C15H18NO8S">
+      <species metaid="M_MAM03636e" sboTerm="SBO:0000247" id="M_MAM03636e" name="glucuronide-thiomethyl-acetaminophen conjugate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C15H18NO8S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03636e">
+            <rdf:Description rdf:about="#M_MAM03636e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/gtacmp"/>
@@ -128456,10 +128508,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03686e" sboTerm="SBO:0000247" id="MAM03686e" name="ibuprofen-R" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C13H17O2">
+      <species metaid="M_MAM03686e" sboTerm="SBO:0000247" id="M_MAM03686e" name="ibuprofen-R" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C13H17O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03686e">
+            <rdf:Description rdf:about="#M_MAM03686e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/ibup_R"/>
@@ -128469,10 +128521,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03687e" sboTerm="SBO:0000247" id="MAM03687e" name="ibuprofen-S" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C13H17O2">
+      <species metaid="M_MAM03687e" sboTerm="SBO:0000247" id="M_MAM03687e" name="ibuprofen-S" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C13H17O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03687e">
+            <rdf:Description rdf:about="#M_MAM03687e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/ibup_S"/>
@@ -128482,10 +128534,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03690e" sboTerm="SBO:0000247" id="MAM03690e" name="ibuprofen acyl glucuronide" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C19H25O8">
+      <species metaid="M_MAM03690e" sboTerm="SBO:0000247" id="M_MAM03690e" name="ibuprofen acyl glucuronide" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C19H25O8">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03690e">
+            <rdf:Description rdf:about="#M_MAM03690e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ibupgluc"/>
@@ -128496,10 +128548,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03705e" sboTerm="SBO:0000247" id="MAM03705e" name="3&apos;-hydroxy-iso-delta-4&apos;,5&apos;-hydroxy acid form of lovastatin" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H37O7">
+      <species metaid="M_MAM03705e" sboTerm="SBO:0000247" id="M_MAM03705e" name="3&apos;-hydroxy-iso-delta-4&apos;,5&apos;-hydroxy acid form of lovastatin" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H37O7">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03705e">
+            <rdf:Description rdf:about="#M_MAM03705e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/isolvstacid"/>
@@ -128510,10 +128562,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03728e" sboTerm="SBO:0000247" id="MAM03728e" name="Losartan-E3174/ losartan-M6" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C22H19ClN6O2">
+      <species metaid="M_MAM03728e" sboTerm="SBO:0000247" id="M_MAM03728e" name="Losartan-E3174/ losartan-M6" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C22H19ClN6O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03728e">
+            <rdf:Description rdf:about="#M_MAM03728e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/lst4exp"/>
@@ -128524,10 +128576,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03729e" sboTerm="SBO:0000247" id="MAM03729e" name="Losartan" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C22H22ClN6O">
+      <species metaid="M_MAM03729e" sboTerm="SBO:0000247" id="M_MAM03729e" name="Losartan" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C22H22ClN6O">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03729e">
+            <rdf:Description rdf:about="#M_MAM03729e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/lstn"/>
@@ -128538,10 +128590,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03730e" sboTerm="SBO:0000247" id="MAM03730e" name="Losartan-N1-glucuronide" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C28H30ClN6O7">
+      <species metaid="M_MAM03730e" sboTerm="SBO:0000247" id="M_MAM03730e" name="Losartan-N1-glucuronide" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C28H30ClN6O7">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03730e">
+            <rdf:Description rdf:about="#M_MAM03730e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/lstn1gluc"/>
@@ -128552,10 +128604,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03731e" sboTerm="SBO:0000247" id="MAM03731e" name="Losartan-M1" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C22H22ClN6O2">
+      <species metaid="M_MAM03731e" sboTerm="SBO:0000247" id="M_MAM03731e" name="Losartan-M1" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C22H22ClN6O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03731e">
+            <rdf:Description rdf:about="#M_MAM03731e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/lstnm1"/>
@@ -128566,10 +128618,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03732e" sboTerm="SBO:0000247" id="MAM03732e" name="Losartan-M2" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C22H22ClN6O2">
+      <species metaid="M_MAM03732e" sboTerm="SBO:0000247" id="M_MAM03732e" name="Losartan-M2" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C22H22ClN6O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03732e">
+            <rdf:Description rdf:about="#M_MAM03732e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/lstnm2"/>
@@ -128580,10 +128632,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03733e" sboTerm="SBO:0000247" id="MAM03733e" name="Losartan-M4 (glucuronide derivative)" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C28H27ClN6O8">
+      <species metaid="M_MAM03733e" sboTerm="SBO:0000247" id="M_MAM03733e" name="Losartan-M4 (glucuronide derivative)" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C28H27ClN6O8">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03733e">
+            <rdf:Description rdf:about="#M_MAM03733e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/lstnm4"/>
@@ -128594,10 +128646,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03734e" sboTerm="SBO:0000247" id="MAM03734e" name="Losartan-M5" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C22H22ClN6O2">
+      <species metaid="M_MAM03734e" sboTerm="SBO:0000247" id="M_MAM03734e" name="Losartan-M5" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C22H22ClN6O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03734e">
+            <rdf:Description rdf:about="#M_MAM03734e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/lstnm5"/>
@@ -128608,10 +128660,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03735e" sboTerm="SBO:0000247" id="MAM03735e" name="Losartan-N2-glucuronide / Losartan-M7" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C28H30ClN6O7">
+      <species metaid="M_MAM03735e" sboTerm="SBO:0000247" id="M_MAM03735e" name="Losartan-N2-glucuronide / Losartan-M7" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C28H30ClN6O7">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03735e">
+            <rdf:Description rdf:about="#M_MAM03735e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/lstnm7"/>
@@ -128622,10 +128674,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03736e" sboTerm="SBO:0000247" id="MAM03736e" name="lovastatin lactone form" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C24H36O5">
+      <species metaid="M_MAM03736e" sboTerm="SBO:0000247" id="M_MAM03736e" name="lovastatin lactone form" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C24H36O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03736e">
+            <rdf:Description rdf:about="#M_MAM03736e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/lvst"/>
@@ -128636,10 +128688,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03756e" sboTerm="SBO:0000247" id="MAM03756e" name="Midazolam" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H13ClFN3">
+      <species metaid="M_MAM03756e" sboTerm="SBO:0000247" id="M_MAM03756e" name="Midazolam" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H13ClFN3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03756e">
+            <rdf:Description rdf:about="#M_MAM03756e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/mdz"/>
@@ -128650,10 +128702,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03757e" sboTerm="SBO:0000247" id="MAM03757e" name="Midazolam-glucuronide" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H21ClFN3O6">
+      <species metaid="M_MAM03757e" sboTerm="SBO:0000247" id="M_MAM03757e" name="Midazolam-glucuronide" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H21ClFN3O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03757e">
+            <rdf:Description rdf:about="#M_MAM03757e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/mdzglc"/>
@@ -128664,10 +128716,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03759e" sboTerm="SBO:0000247" id="MAM03759e" name="acetaminophen-mercapturate-conjugate/N-acetyl-cysteine-acetaminophen" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C13H15N2O5S">
+      <species metaid="M_MAM03759e" sboTerm="SBO:0000247" id="M_MAM03759e" name="acetaminophen-mercapturate-conjugate/N-acetyl-cysteine-acetaminophen" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C13H15N2O5S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03759e">
+            <rdf:Description rdf:about="#M_MAM03759e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/meracmp"/>
@@ -128678,10 +128730,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03770e" sboTerm="SBO:0000247" id="MAM03770e" name="Methyl-hydroxy-gliclazide" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C15H20N3O4S">
+      <species metaid="M_MAM03770e" sboTerm="SBO:0000247" id="M_MAM03770e" name="Methyl-hydroxy-gliclazide" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C15H20N3O4S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03770e">
+            <rdf:Description rdf:about="#M_MAM03770e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/mhglz"/>
@@ -128692,10 +128744,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03780e" sboTerm="SBO:0000247" id="MAM03780e" name="N-desmethyl-rosuvastatin" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C42H48CaF2N6O12S2">
+      <species metaid="M_MAM03780e" sboTerm="SBO:0000247" id="M_MAM03780e" name="N-desmethyl-rosuvastatin" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C42H48CaF2N6O12S2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03780e">
+            <rdf:Description rdf:about="#M_MAM03780e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ndersv"/>
@@ -128706,10 +128758,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03781e" sboTerm="SBO:0000247" id="MAM03781e" name="acid metabolite of nifedipine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C16H13N2O6">
+      <species metaid="M_MAM03781e" sboTerm="SBO:0000247" id="M_MAM03781e" name="acid metabolite of nifedipine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C16H13N2O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03781e">
+            <rdf:Description rdf:about="#M_MAM03781e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/nfdac"/>
@@ -128720,10 +128772,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03782e" sboTerm="SBO:0000247" id="MAM03782e" name="lactone form of nifedipine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C16H12N2O6">
+      <species metaid="M_MAM03782e" sboTerm="SBO:0000247" id="M_MAM03782e" name="lactone form of nifedipine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C16H12N2O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03782e">
+            <rdf:Description rdf:about="#M_MAM03782e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/nfdlac"/>
@@ -128734,10 +128786,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03783e" sboTerm="SBO:0000247" id="MAM03783e" name="Nitropyridine metabolite of nifedipine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C17H16N2O6">
+      <species metaid="M_MAM03783e" sboTerm="SBO:0000247" id="M_MAM03783e" name="Nitropyridine metabolite of nifedipine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C17H16N2O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03783e">
+            <rdf:Description rdf:about="#M_MAM03783e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/nfdnpy"/>
@@ -128748,10 +128800,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03784e" sboTerm="SBO:0000247" id="MAM03784e" name="hydroxy metabolite of nifedipine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C16H13N2O7">
+      <species metaid="M_MAM03784e" sboTerm="SBO:0000247" id="M_MAM03784e" name="hydroxy metabolite of nifedipine" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C16H13N2O7">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03784e">
+            <rdf:Description rdf:about="#M_MAM03784e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/nfdoh"/>
@@ -128762,10 +128814,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03801e" sboTerm="SBO:0000247" id="MAM03801e" name="oxypurinol" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H4N4O2">
+      <species metaid="M_MAM03801e" sboTerm="SBO:0000247" id="M_MAM03801e" name="oxypurinol" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H4N4O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03801e">
+            <rdf:Description rdf:about="#M_MAM03801e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/oxyp"/>
@@ -128776,10 +128828,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03799e" sboTerm="SBO:0000247" id="MAM03799e" name="oxypurinol-1-riboside" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H12N4O7">
+      <species metaid="M_MAM03799e" sboTerm="SBO:0000247" id="M_MAM03799e" name="oxypurinol-1-riboside" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H12N4O7">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03799e">
+            <rdf:Description rdf:about="#M_MAM03799e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/oxy1rb"/>
@@ -128790,10 +128842,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03800e" sboTerm="SBO:0000247" id="MAM03800e" name="oxypurinol-7-riboside" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H12N4O7">
+      <species metaid="M_MAM03800e" sboTerm="SBO:0000247" id="M_MAM03800e" name="oxypurinol-7-riboside" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H12N4O7">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03800e">
+            <rdf:Description rdf:about="#M_MAM03800e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/oxy7rb"/>
@@ -128805,10 +128857,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03892e" sboTerm="SBO:0000247" id="MAM03892e" name="des-isoproylpropionic-acid-fluvastatin" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H16FNNaO2">
+      <species metaid="M_MAM03892e" sboTerm="SBO:0000247" id="M_MAM03892e" name="des-isoproylpropionic-acid-fluvastatin" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H16FNNaO2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03892e">
+            <rdf:Description rdf:about="#M_MAM03892e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/profvs"/>
@@ -128819,10 +128871,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03911e" sboTerm="SBO:0000247" id="MAM03911e" name="pitavastatin" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C50H46CaF2N2O8">
+      <species metaid="M_MAM03911e" sboTerm="SBO:0000247" id="M_MAM03911e" name="pitavastatin" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C50H46CaF2N2O8">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03911e">
+            <rdf:Description rdf:about="#M_MAM03911e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ptvst"/>
@@ -128833,10 +128885,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03913e" sboTerm="SBO:0000247" id="MAM03913e" name="pitavastatin-lactone" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="C50H44CaF2N2O6">
+      <species metaid="M_MAM03913e" sboTerm="SBO:0000247" id="M_MAM03913e" name="pitavastatin-lactone" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="C50H44CaF2N2O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03913e">
+            <rdf:Description rdf:about="#M_MAM03913e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ptvstlac"/>
@@ -128847,10 +128899,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03915e" sboTerm="SBO:0000247" id="MAM03915e" name="pitavastatin-M3" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C50H42CaF2N2O8">
+      <species metaid="M_MAM03915e" sboTerm="SBO:0000247" id="M_MAM03915e" name="pitavastatin-M3" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C50H42CaF2N2O8">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03915e">
+            <rdf:Description rdf:about="#M_MAM03915e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ptvstm3"/>
@@ -128861,10 +128913,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03916e" sboTerm="SBO:0000247" id="MAM03916e" name="pravastatin" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H35NaO7">
+      <species metaid="M_MAM03916e" sboTerm="SBO:0000247" id="M_MAM03916e" name="pravastatin" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H35NaO7">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03916e">
+            <rdf:Description rdf:about="#M_MAM03916e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pvs"/>
@@ -128875,10 +128927,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03917e" sboTerm="SBO:0000247" id="MAM03917e" name="pravastatin glucuronide" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C29H42NaO13">
+      <species metaid="M_MAM03917e" sboTerm="SBO:0000247" id="M_MAM03917e" name="pravastatin glucuronide" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C29H42NaO13">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03917e">
+            <rdf:Description rdf:about="#M_MAM03917e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pvsgluc"/>
@@ -128889,10 +128941,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03918e" sboTerm="SBO:0000247" id="MAM03918e" name="rosuvastatin" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C44H54CaF2N6O12S2">
+      <species metaid="M_MAM03918e" sboTerm="SBO:0000247" id="M_MAM03918e" name="rosuvastatin" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C44H54CaF2N6O12S2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03918e">
+            <rdf:Description rdf:about="#M_MAM03918e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/rsv"/>
@@ -128903,10 +128955,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03920e" sboTerm="SBO:0000247" id="MAM03920e" name="rosuvastatin-5S-lactone" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="C44H52CaF2N6O10S2">
+      <species metaid="M_MAM03920e" sboTerm="SBO:0000247" id="M_MAM03920e" name="rosuvastatin-5S-lactone" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="C44H52CaF2N6O10S2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03920e">
+            <rdf:Description rdf:about="#M_MAM03920e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/rsvlac"/>
@@ -128917,10 +128969,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03921e" sboTerm="SBO:0000247" id="MAM03921e" name="sulphate-conjugate-3-methoxy-acetaminophen" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C8H8NO6S">
+      <species metaid="M_MAM03921e" sboTerm="SBO:0000247" id="M_MAM03921e" name="sulphate-conjugate-3-methoxy-acetaminophen" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C8H8NO6S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03921e">
+            <rdf:Description rdf:about="#M_MAM03921e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/s3meacmp"/>
@@ -128931,10 +128983,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03934e" sboTerm="SBO:0000247" id="MAM03934e" name="simvastatin lactone form" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H38O5">
+      <species metaid="M_MAM03934e" sboTerm="SBO:0000247" id="M_MAM03934e" name="simvastatin lactone form" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H38O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03934e">
+            <rdf:Description rdf:about="#M_MAM03934e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/smv"/>
@@ -128945,10 +128997,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03935e" sboTerm="SBO:0000247" id="MAM03935e" name="simvastatin dihydroxy acid form" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C25H39O6">
+      <species metaid="M_MAM03935e" sboTerm="SBO:0000247" id="M_MAM03935e" name="simvastatin dihydroxy acid form" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C25H39O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03935e">
+            <rdf:Description rdf:about="#M_MAM03935e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/smvacid"/>
@@ -128959,10 +129011,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03952e" sboTerm="SBO:0000247" id="MAM03952e" name="sulphate-conjugate of thiomethyl-acetaminophen" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C9H10NO5S2">
+      <species metaid="M_MAM03952e" sboTerm="SBO:0000247" id="M_MAM03952e" name="sulphate-conjugate of thiomethyl-acetaminophen" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C9H10NO5S2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03952e">
+            <rdf:Description rdf:about="#M_MAM03952e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/stacmp"/>
@@ -128973,10 +129025,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03958e" sboTerm="SBO:0000247" id="MAM03958e" name="sulphate-conjugate-acetaminophen" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C8H8NO5S">
+      <species metaid="M_MAM03958e" sboTerm="SBO:0000247" id="M_MAM03958e" name="sulphate-conjugate-acetaminophen" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C8H8NO5S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03958e">
+            <rdf:Description rdf:about="#M_MAM03958e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/sulpacmp"/>
@@ -128987,10 +129039,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03959e" sboTerm="SBO:0000247" id="MAM03959e" name="Tacrolimus" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C44H69NO12">
+      <species metaid="M_MAM03959e" sboTerm="SBO:0000247" id="M_MAM03959e" name="Tacrolimus" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C44H69NO12">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03959e">
+            <rdf:Description rdf:about="#M_MAM03959e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/tacr"/>
@@ -129001,10 +129053,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03961e" sboTerm="SBO:0000247" id="MAM03961e" name="taurine conjugate of S-ibuprofen" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C15H22NO4S">
+      <species metaid="M_MAM03961e" sboTerm="SBO:0000247" id="M_MAM03961e" name="taurine conjugate of S-ibuprofen" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C15H22NO4S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03961e">
+            <rdf:Description rdf:about="#M_MAM03961e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/tauribup_S"/>
@@ -129014,10 +129066,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03985e" sboTerm="SBO:0000247" id="MAM03985e" name="threo-isomer of fluvastain" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C24H25FNNaO4">
+      <species metaid="M_MAM03985e" sboTerm="SBO:0000247" id="M_MAM03985e" name="threo-isomer of fluvastain" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C24H25FNNaO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03985e">
+            <rdf:Description rdf:about="#M_MAM03985e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/thrfvs"/>
@@ -129028,10 +129080,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03998e" sboTerm="SBO:0000247" id="MAM03998e" name="trans-lactone-fluvastatin" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C24H23FNNaO3">
+      <species metaid="M_MAM03998e" sboTerm="SBO:0000247" id="M_MAM03998e" name="trans-lactone-fluvastatin" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C24H23FNNaO3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03998e">
+            <rdf:Description rdf:about="#M_MAM03998e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/tlacfvs"/>
@@ -129042,10 +129094,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM04000e" sboTerm="SBO:0000247" id="MAM04000e" name="Torasemide" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C16H19N4O3S">
+      <species metaid="M_MAM04000e" sboTerm="SBO:0000247" id="M_MAM04000e" name="Torasemide" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C16H19N4O3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM04000e">
+            <rdf:Description rdf:about="#M_MAM04000e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/tmd"/>
@@ -129056,10 +129108,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM04001e" sboTerm="SBO:0000247" id="MAM04001e" name="Torasemide-M1" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C16H19N4O4S">
+      <species metaid="M_MAM04001e" sboTerm="SBO:0000247" id="M_MAM04001e" name="Torasemide-M1" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C16H19N4O4S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM04001e">
+            <rdf:Description rdf:about="#M_MAM04001e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/tmdm1"/>
@@ -129070,10 +129122,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM04002e" sboTerm="SBO:0000247" id="MAM04002e" name="Torasemide-M3" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C16H19N4O4S">
+      <species metaid="M_MAM04002e" sboTerm="SBO:0000247" id="M_MAM04002e" name="Torasemide-M3" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C16H19N4O4S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM04002e">
+            <rdf:Description rdf:about="#M_MAM04002e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/tmdm3"/>
@@ -129084,10 +129136,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM04003e" sboTerm="SBO:0000247" id="MAM04003e" name="Torasemide-M5" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C16H16N4O5S">
+      <species metaid="M_MAM04003e" sboTerm="SBO:0000247" id="M_MAM04003e" name="Torasemide-M5" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C16H16N4O5S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM04003e">
+            <rdf:Description rdf:about="#M_MAM04003e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/tmdm5"/>
@@ -129098,10 +129150,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM04007e" sboTerm="SBO:0000247" id="MAM04007e" name="triol metabolite of pravastatin" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H37NaO9">
+      <species metaid="M_MAM04007e" sboTerm="SBO:0000247" id="M_MAM04007e" name="triol metabolite of pravastatin" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H37NaO9">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM04007e">
+            <rdf:Description rdf:about="#M_MAM04007e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/tripvs"/>
@@ -129112,10 +129164,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM04038e" sboTerm="SBO:0000247" id="MAM04038e" name="thiomethyl-sulphoxide-acetaminophen-glucuronide" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C15H18NO9S">
+      <species metaid="M_MAM04038e" sboTerm="SBO:0000247" id="M_MAM04038e" name="thiomethyl-sulphoxide-acetaminophen-glucuronide" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C15H18NO9S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM04038e">
+            <rdf:Description rdf:about="#M_MAM04038e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/tsacmgluc"/>
@@ -129126,10 +129178,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM04039e" sboTerm="SBO:0000247" id="MAM04039e" name="thiomethyl-sulphoxide-acetaminophen-sulphate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C9H10NO6S2">
+      <species metaid="M_MAM04039e" sboTerm="SBO:0000247" id="M_MAM04039e" name="thiomethyl-sulphoxide-acetaminophen-sulphate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C9H10NO6S2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM04039e">
+            <rdf:Description rdf:about="#M_MAM04039e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/tsacmsul"/>
@@ -129140,10 +129192,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03581r" sboTerm="SBO:0000247" id="MAM03581r" name="fluvstatin-glucuronide" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C30H32FNNaO10">
+      <species metaid="M_MAM03581r" sboTerm="SBO:0000247" id="M_MAM03581r" name="fluvstatin-glucuronide" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C30H32FNNaO10">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03581r">
+            <rdf:Description rdf:about="#M_MAM03581r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/fvsgluc"/>
@@ -129154,10 +129206,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03582r" sboTerm="SBO:0000247" id="MAM03582r" name="des-isopropyl-dihydro-fluvastatin-tetranor" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C17H13FNNaO2">
+      <species metaid="M_MAM03582r" sboTerm="SBO:0000247" id="M_MAM03582r" name="des-isopropyl-dihydro-fluvastatin-tetranor" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C17H13FNNaO2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03582r">
+            <rdf:Description rdf:about="#M_MAM03582r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/fvstet"/>
@@ -129168,10 +129220,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03583r" sboTerm="SBO:0000247" id="MAM03583r" name="des-isopropyl-dihydro-fluvastatin-tetranor-glucuronide" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C23H20FNNaO8">
+      <species metaid="M_MAM03583r" sboTerm="SBO:0000247" id="M_MAM03583r" name="des-isopropyl-dihydro-fluvastatin-tetranor-glucuronide" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C23H20FNNaO8">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03583r">
+            <rdf:Description rdf:about="#M_MAM03583r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/fvstetglu"/>
@@ -129182,10 +129234,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03583c" sboTerm="SBO:0000247" id="MAM03583c" name="des-isopropyl-dihydro-fluvastatin-tetranor-glucuronide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C23H20FNNaO8">
+      <species metaid="M_MAM03583c" sboTerm="SBO:0000247" id="M_MAM03583c" name="des-isopropyl-dihydro-fluvastatin-tetranor-glucuronide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C23H20FNNaO8">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03583c">
+            <rdf:Description rdf:about="#M_MAM03583c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/fvstetglu"/>
@@ -129196,10 +129248,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03582c" sboTerm="SBO:0000247" id="MAM03582c" name="des-isopropyl-dihydro-fluvastatin-tetranor" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C17H13FNNaO2">
+      <species metaid="M_MAM03582c" sboTerm="SBO:0000247" id="M_MAM03582c" name="des-isopropyl-dihydro-fluvastatin-tetranor" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C17H13FNNaO2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03582c">
+            <rdf:Description rdf:about="#M_MAM03582c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/fvstet"/>
@@ -129210,10 +129262,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03998r" sboTerm="SBO:0000247" id="MAM03998r" name="trans-lactone-fluvastatin" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C24H23FNNaO3">
+      <species metaid="M_MAM03998r" sboTerm="SBO:0000247" id="M_MAM03998r" name="trans-lactone-fluvastatin" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C24H23FNNaO3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03998r">
+            <rdf:Description rdf:about="#M_MAM03998r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/tlacfvs"/>
@@ -129224,10 +129276,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03579c" sboTerm="SBO:0000247" id="MAM03579c" name="fluvastatin" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C24H25FNNaO4">
+      <species metaid="M_MAM03579c" sboTerm="SBO:0000247" id="M_MAM03579c" name="fluvastatin" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C24H25FNNaO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03579c">
+            <rdf:Description rdf:about="#M_MAM03579c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/fvs"/>
@@ -129238,10 +129290,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03244r" sboTerm="SBO:0000247" id="MAM03244r" name="3-methoxy-acetaminophen" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H11NO3">
+      <species metaid="M_MAM03244r" sboTerm="SBO:0000247" id="M_MAM03244r" name="3-methoxy-acetaminophen" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H11NO3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03244r">
+            <rdf:Description rdf:about="#M_MAM03244r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/3meacmp"/>
@@ -129252,10 +129304,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03594r" sboTerm="SBO:0000247" id="MAM03594r" name="glucuronide-conjugate of 3-methoxy-acetaminophen" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C14H16NO9">
+      <species metaid="M_MAM03594r" sboTerm="SBO:0000247" id="M_MAM03594r" name="glucuronide-conjugate of 3-methoxy-acetaminophen" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C14H16NO9">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03594r">
+            <rdf:Description rdf:about="#M_MAM03594r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/glc3meacp"/>
@@ -129266,10 +129318,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03594c" sboTerm="SBO:0000247" id="MAM03594c" name="glucuronide-conjugate of 3-methoxy-acetaminophen" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C14H16NO9">
+      <species metaid="M_MAM03594c" sboTerm="SBO:0000247" id="M_MAM03594c" name="glucuronide-conjugate of 3-methoxy-acetaminophen" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C14H16NO9">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03594c">
+            <rdf:Description rdf:about="#M_MAM03594c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/glc3meacp"/>
@@ -129280,10 +129332,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03999r" sboTerm="SBO:0000247" id="MAM03999r" name="thiomethyl-conjugate-acetaminophen" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H11NO2S">
+      <species metaid="M_MAM03999r" sboTerm="SBO:0000247" id="M_MAM03999r" name="thiomethyl-conjugate-acetaminophen" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H11NO2S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03999r">
+            <rdf:Description rdf:about="#M_MAM03999r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/tmacmp"/>
@@ -129294,10 +129346,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03636r" sboTerm="SBO:0000247" id="MAM03636r" name="glucuronide-thiomethyl-acetaminophen conjugate" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C15H18NO8S">
+      <species metaid="M_MAM03636r" sboTerm="SBO:0000247" id="M_MAM03636r" name="glucuronide-thiomethyl-acetaminophen conjugate" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C15H18NO8S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03636r">
+            <rdf:Description rdf:about="#M_MAM03636r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/gtacmp"/>
@@ -129308,10 +129360,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03636c" sboTerm="SBO:0000247" id="MAM03636c" name="glucuronide-thiomethyl-acetaminophen conjugate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C15H18NO8S">
+      <species metaid="M_MAM03636c" sboTerm="SBO:0000247" id="M_MAM03636c" name="glucuronide-thiomethyl-acetaminophen conjugate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C15H18NO8S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03636c">
+            <rdf:Description rdf:about="#M_MAM03636c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/gtacmp"/>
@@ -129322,10 +129374,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03690c" sboTerm="SBO:0000247" id="MAM03690c" name="ibuprofen acyl glucuronide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C19H25O8">
+      <species metaid="M_MAM03690c" sboTerm="SBO:0000247" id="M_MAM03690c" name="ibuprofen acyl glucuronide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C19H25O8">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03690c">
+            <rdf:Description rdf:about="#M_MAM03690c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ibupgluc"/>
@@ -129336,10 +129388,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03687r" sboTerm="SBO:0000247" id="MAM03687r" name="ibuprofen-S" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C13H17O2">
+      <species metaid="M_MAM03687r" sboTerm="SBO:0000247" id="M_MAM03687r" name="ibuprofen-S" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C13H17O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03687r">
+            <rdf:Description rdf:about="#M_MAM03687r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/ibup_S"/>
@@ -129349,10 +129401,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03690r" sboTerm="SBO:0000247" id="MAM03690r" name="ibuprofen acyl glucuronide" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C19H25O8">
+      <species metaid="M_MAM03690r" sboTerm="SBO:0000247" id="M_MAM03690r" name="ibuprofen acyl glucuronide" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C19H25O8">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03690r">
+            <rdf:Description rdf:about="#M_MAM03690r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ibupgluc"/>
@@ -129363,10 +129415,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03686c" sboTerm="SBO:0000247" id="MAM03686c" name="ibuprofen-R" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C13H17O2">
+      <species metaid="M_MAM03686c" sboTerm="SBO:0000247" id="M_MAM03686c" name="ibuprofen-R" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C13H17O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03686c">
+            <rdf:Description rdf:about="#M_MAM03686c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/ibup_R"/>
@@ -129376,10 +129428,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03688c" sboTerm="SBO:0000247" id="MAM03688c" name="ibuprofen-CoA-R form" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C34H48N7O17P3S">
+      <species metaid="M_MAM03688c" sboTerm="SBO:0000247" id="M_MAM03688c" name="ibuprofen-CoA-R form" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C34H48N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03688c">
+            <rdf:Description rdf:about="#M_MAM03688c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/ibupcoa_R"/>
@@ -129389,10 +129441,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03686r" sboTerm="SBO:0000247" id="MAM03686r" name="ibuprofen-R" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C13H17O2">
+      <species metaid="M_MAM03686r" sboTerm="SBO:0000247" id="M_MAM03686r" name="ibuprofen-R" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C13H17O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03686r">
+            <rdf:Description rdf:about="#M_MAM03686r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/ibup_R"/>
@@ -129402,10 +129454,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03183r" sboTerm="SBO:0000247" id="MAM03183r" name="2-hydroxy-R-ibuprofen" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C13H17O3">
+      <species metaid="M_MAM03183r" sboTerm="SBO:0000247" id="M_MAM03183r" name="2-hydroxy-R-ibuprofen" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C13H17O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03183r">
+            <rdf:Description rdf:about="#M_MAM03183r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/2hibup_R"/>
@@ -129415,10 +129467,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03223r" sboTerm="SBO:0000247" id="MAM03223r" name="3-hydroxy R-ibuprofen" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C13H17O3">
+      <species metaid="M_MAM03223r" sboTerm="SBO:0000247" id="M_MAM03223r" name="3-hydroxy R-ibuprofen" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C13H17O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03223r">
+            <rdf:Description rdf:about="#M_MAM03223r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/3hibup_R"/>
@@ -129428,10 +129480,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03689c" sboTerm="SBO:0000247" id="MAM03689c" name="ibuprofen-CoA-S form" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C34H48N7O17P3S">
+      <species metaid="M_MAM03689c" sboTerm="SBO:0000247" id="M_MAM03689c" name="ibuprofen-CoA-S form" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C34H48N7O17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03689c">
+            <rdf:Description rdf:about="#M_MAM03689c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/ibupcoa_S"/>
@@ -129441,10 +129493,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03687c" sboTerm="SBO:0000247" id="MAM03687c" name="ibuprofen-S" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C13H17O2">
+      <species metaid="M_MAM03687c" sboTerm="SBO:0000247" id="M_MAM03687c" name="ibuprofen-S" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C13H17O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03687c">
+            <rdf:Description rdf:about="#M_MAM03687c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/ibup_S"/>
@@ -129454,10 +129506,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03961c" sboTerm="SBO:0000247" id="MAM03961c" name="taurine conjugate of S-ibuprofen" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C15H22NO4S">
+      <species metaid="M_MAM03961c" sboTerm="SBO:0000247" id="M_MAM03961c" name="taurine conjugate of S-ibuprofen" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C15H22NO4S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03961c">
+            <rdf:Description rdf:about="#M_MAM03961c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/tauribup_S"/>
@@ -129467,10 +129519,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03705c" sboTerm="SBO:0000247" id="MAM03705c" name="3&apos;-hydroxy-iso-delta-4&apos;,5&apos;-hydroxy acid form of lovastatin" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H37O7">
+      <species metaid="M_MAM03705c" sboTerm="SBO:0000247" id="M_MAM03705c" name="3&apos;-hydroxy-iso-delta-4&apos;,5&apos;-hydroxy acid form of lovastatin" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H37O7">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03705c">
+            <rdf:Description rdf:about="#M_MAM03705c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/isolvstacid"/>
@@ -129481,10 +129533,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03728c" sboTerm="SBO:0000247" id="MAM03728c" name="Losartan-E3174/ losartan-M6" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C22H19ClN6O2">
+      <species metaid="M_MAM03728c" sboTerm="SBO:0000247" id="M_MAM03728c" name="Losartan-E3174/ losartan-M6" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C22H19ClN6O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03728c">
+            <rdf:Description rdf:about="#M_MAM03728c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/lst4exp"/>
@@ -129495,10 +129547,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03729r" sboTerm="SBO:0000247" id="MAM03729r" name="Losartan" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C22H22ClN6O">
+      <species metaid="M_MAM03729r" sboTerm="SBO:0000247" id="M_MAM03729r" name="Losartan" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C22H22ClN6O">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03729r">
+            <rdf:Description rdf:about="#M_MAM03729r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/lstn"/>
@@ -129509,10 +129561,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03728r" sboTerm="SBO:0000247" id="MAM03728r" name="Losartan-E3174/ losartan-M6" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C22H19ClN6O2">
+      <species metaid="M_MAM03728r" sboTerm="SBO:0000247" id="M_MAM03728r" name="Losartan-E3174/ losartan-M6" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C22H19ClN6O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03728r">
+            <rdf:Description rdf:about="#M_MAM03728r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/lst4exp"/>
@@ -129523,10 +129575,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03730r" sboTerm="SBO:0000247" id="MAM03730r" name="Losartan-N1-glucuronide" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C28H30ClN6O7">
+      <species metaid="M_MAM03730r" sboTerm="SBO:0000247" id="M_MAM03730r" name="Losartan-N1-glucuronide" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C28H30ClN6O7">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03730r">
+            <rdf:Description rdf:about="#M_MAM03730r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/lstn1gluc"/>
@@ -129537,10 +129589,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03730c" sboTerm="SBO:0000247" id="MAM03730c" name="Losartan-N1-glucuronide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C28H30ClN6O7">
+      <species metaid="M_MAM03730c" sboTerm="SBO:0000247" id="M_MAM03730c" name="Losartan-N1-glucuronide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C28H30ClN6O7">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03730c">
+            <rdf:Description rdf:about="#M_MAM03730c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/lstn1gluc"/>
@@ -129551,10 +129603,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03729c" sboTerm="SBO:0000247" id="MAM03729c" name="Losartan" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C22H22ClN6O">
+      <species metaid="M_MAM03729c" sboTerm="SBO:0000247" id="M_MAM03729c" name="Losartan" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C22H22ClN6O">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03729c">
+            <rdf:Description rdf:about="#M_MAM03729c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/lstn"/>
@@ -129565,10 +129617,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03731r" sboTerm="SBO:0000247" id="MAM03731r" name="Losartan-M1" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C22H22ClN6O2">
+      <species metaid="M_MAM03731r" sboTerm="SBO:0000247" id="M_MAM03731r" name="Losartan-M1" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C22H22ClN6O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03731r">
+            <rdf:Description rdf:about="#M_MAM03731r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/lstnm1"/>
@@ -129579,10 +129631,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03731c" sboTerm="SBO:0000247" id="MAM03731c" name="Losartan-M1" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C22H22ClN6O2">
+      <species metaid="M_MAM03731c" sboTerm="SBO:0000247" id="M_MAM03731c" name="Losartan-M1" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C22H22ClN6O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03731c">
+            <rdf:Description rdf:about="#M_MAM03731c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/lstnm1"/>
@@ -129593,10 +129645,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03732r" sboTerm="SBO:0000247" id="MAM03732r" name="Losartan-M2" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C22H22ClN6O2">
+      <species metaid="M_MAM03732r" sboTerm="SBO:0000247" id="M_MAM03732r" name="Losartan-M2" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C22H22ClN6O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03732r">
+            <rdf:Description rdf:about="#M_MAM03732r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/lstnm2"/>
@@ -129607,10 +129659,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03732c" sboTerm="SBO:0000247" id="MAM03732c" name="Losartan-M2" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C22H22ClN6O2">
+      <species metaid="M_MAM03732c" sboTerm="SBO:0000247" id="M_MAM03732c" name="Losartan-M2" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C22H22ClN6O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03732c">
+            <rdf:Description rdf:about="#M_MAM03732c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/lstnm2"/>
@@ -129621,10 +129673,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03733r" sboTerm="SBO:0000247" id="MAM03733r" name="Losartan-M4 (glucuronide derivative)" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C28H27ClN6O8">
+      <species metaid="M_MAM03733r" sboTerm="SBO:0000247" id="M_MAM03733r" name="Losartan-M4 (glucuronide derivative)" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C28H27ClN6O8">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03733r">
+            <rdf:Description rdf:about="#M_MAM03733r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/lstnm4"/>
@@ -129635,10 +129687,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03733c" sboTerm="SBO:0000247" id="MAM03733c" name="Losartan-M4 (glucuronide derivative)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C28H27ClN6O8">
+      <species metaid="M_MAM03733c" sboTerm="SBO:0000247" id="M_MAM03733c" name="Losartan-M4 (glucuronide derivative)" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C28H27ClN6O8">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03733c">
+            <rdf:Description rdf:about="#M_MAM03733c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/lstnm4"/>
@@ -129649,10 +129701,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03734r" sboTerm="SBO:0000247" id="MAM03734r" name="Losartan-M5" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C22H22ClN6O2">
+      <species metaid="M_MAM03734r" sboTerm="SBO:0000247" id="M_MAM03734r" name="Losartan-M5" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C22H22ClN6O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03734r">
+            <rdf:Description rdf:about="#M_MAM03734r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/lstnm5"/>
@@ -129663,10 +129715,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03734c" sboTerm="SBO:0000247" id="MAM03734c" name="Losartan-M5" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C22H22ClN6O2">
+      <species metaid="M_MAM03734c" sboTerm="SBO:0000247" id="M_MAM03734c" name="Losartan-M5" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C22H22ClN6O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03734c">
+            <rdf:Description rdf:about="#M_MAM03734c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/lstnm5"/>
@@ -129677,10 +129729,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03735c" sboTerm="SBO:0000247" id="MAM03735c" name="Losartan-N2-glucuronide / Losartan-M7" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C28H30ClN6O7">
+      <species metaid="M_MAM03735c" sboTerm="SBO:0000247" id="M_MAM03735c" name="Losartan-N2-glucuronide / Losartan-M7" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C28H30ClN6O7">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03735c">
+            <rdf:Description rdf:about="#M_MAM03735c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/lstnm7"/>
@@ -129691,10 +129743,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03735r" sboTerm="SBO:0000247" id="MAM03735r" name="Losartan-N2-glucuronide / Losartan-M7" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C28H30ClN6O7">
+      <species metaid="M_MAM03735r" sboTerm="SBO:0000247" id="M_MAM03735r" name="Losartan-N2-glucuronide / Losartan-M7" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C28H30ClN6O7">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03735r">
+            <rdf:Description rdf:about="#M_MAM03735r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/lstnm7"/>
@@ -129705,10 +129757,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03737c" sboTerm="SBO:0000247" id="MAM03737c" name="lovastatin-hydroxyacid form" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H37O6">
+      <species metaid="M_MAM03737c" sboTerm="SBO:0000247" id="M_MAM03737c" name="lovastatin-hydroxyacid form" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H37O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03737c">
+            <rdf:Description rdf:about="#M_MAM03737c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/lvstacid"/>
@@ -129719,10 +129771,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03736c" sboTerm="SBO:0000247" id="MAM03736c" name="lovastatin lactone form" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C24H36O5">
+      <species metaid="M_MAM03736c" sboTerm="SBO:0000247" id="M_MAM03736c" name="lovastatin lactone form" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C24H36O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03736c">
+            <rdf:Description rdf:about="#M_MAM03736c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/lvst"/>
@@ -129733,10 +129785,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03737e" sboTerm="SBO:0000247" id="MAM03737e" name="lovastatin-hydroxyacid form" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H37O6">
+      <species metaid="M_MAM03737e" sboTerm="SBO:0000247" id="M_MAM03737e" name="lovastatin-hydroxyacid form" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H37O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03737e">
+            <rdf:Description rdf:about="#M_MAM03737e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/lvstacid"/>
@@ -129747,10 +129799,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03737r" sboTerm="SBO:0000247" id="MAM03737r" name="lovastatin-hydroxyacid form" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H37O6">
+      <species metaid="M_MAM03737r" sboTerm="SBO:0000247" id="M_MAM03737r" name="lovastatin-hydroxyacid form" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H37O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03737r">
+            <rdf:Description rdf:about="#M_MAM03737r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/lvstacid"/>
@@ -129761,10 +129813,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03297r" sboTerm="SBO:0000247" id="MAM03297r" name="6&apos;-beta-hydroxy-lovastatin-acid form" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H37O7">
+      <species metaid="M_MAM03297r" sboTerm="SBO:0000247" id="M_MAM03297r" name="6&apos;-beta-hydroxy-lovastatin-acid form" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H37O7">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03297r">
+            <rdf:Description rdf:about="#M_MAM03297r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/6hlvstacid"/>
@@ -129775,10 +129827,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03302r" sboTerm="SBO:0000247" id="MAM03302r" name="6&apos;-exomethylene-lovastatin-acid form" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H35O6">
+      <species metaid="M_MAM03302r" sboTerm="SBO:0000247" id="M_MAM03302r" name="6&apos;-exomethylene-lovastatin-acid form" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H35O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03302r">
+            <rdf:Description rdf:about="#M_MAM03302r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/6melvacid"/>
@@ -129789,10 +129841,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03736r" sboTerm="SBO:0000247" id="MAM03736r" name="lovastatin lactone form" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C24H36O5">
+      <species metaid="M_MAM03736r" sboTerm="SBO:0000247" id="M_MAM03736r" name="lovastatin lactone form" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C24H36O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03736r">
+            <rdf:Description rdf:about="#M_MAM03736r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/lvst"/>
@@ -129803,10 +129855,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03228r" sboTerm="SBO:0000247" id="MAM03228r" name="3&apos;&apos;-hydroxy-lovastatin lactone form" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C24H36O6">
+      <species metaid="M_MAM03228r" sboTerm="SBO:0000247" id="M_MAM03228r" name="3&apos;&apos;-hydroxy-lovastatin lactone form" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C24H36O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03228r">
+            <rdf:Description rdf:about="#M_MAM03228r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/3hlvst"/>
@@ -129817,10 +129869,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03296r" sboTerm="SBO:0000247" id="MAM03296r" name="6&apos;-beta-hydroxy-lovastatin lactone form" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C24H36O6">
+      <species metaid="M_MAM03296r" sboTerm="SBO:0000247" id="M_MAM03296r" name="6&apos;-beta-hydroxy-lovastatin lactone form" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C24H36O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03296r">
+            <rdf:Description rdf:about="#M_MAM03296r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/6hlvst"/>
@@ -129831,10 +129883,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03303r" sboTerm="SBO:0000247" id="MAM03303r" name="6&apos;-exomethylene-lovastatin lactone form" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C24H34O5">
+      <species metaid="M_MAM03303r" sboTerm="SBO:0000247" id="M_MAM03303r" name="6&apos;-exomethylene-lovastatin lactone form" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C24H34O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03303r">
+            <rdf:Description rdf:about="#M_MAM03303r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/6melvst"/>
@@ -129845,10 +129897,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03757c" sboTerm="SBO:0000247" id="MAM03757c" name="Midazolam-glucuronide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H21ClFN3O6">
+      <species metaid="M_MAM03757c" sboTerm="SBO:0000247" id="M_MAM03757c" name="Midazolam-glucuronide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H21ClFN3O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03757c">
+            <rdf:Description rdf:about="#M_MAM03757c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/mdzglc"/>
@@ -129859,10 +129911,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03756c" sboTerm="SBO:0000247" id="MAM03756c" name="Midazolam" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H13ClFN3">
+      <species metaid="M_MAM03756c" sboTerm="SBO:0000247" id="M_MAM03756c" name="Midazolam" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H13ClFN3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03756c">
+            <rdf:Description rdf:about="#M_MAM03756c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/mdz"/>
@@ -129873,10 +129925,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03770c" sboTerm="SBO:0000247" id="MAM03770c" name="Methyl-hydroxy-gliclazide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C15H20N3O4S">
+      <species metaid="M_MAM03770c" sboTerm="SBO:0000247" id="M_MAM03770c" name="Methyl-hydroxy-gliclazide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C15H20N3O4S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03770c">
+            <rdf:Description rdf:about="#M_MAM03770c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/mhglz"/>
@@ -129887,10 +129939,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03918r" sboTerm="SBO:0000247" id="MAM03918r" name="rosuvastatin" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C44H54CaF2N6O12S2">
+      <species metaid="M_MAM03918r" sboTerm="SBO:0000247" id="M_MAM03918r" name="rosuvastatin" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C44H54CaF2N6O12S2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03918r">
+            <rdf:Description rdf:about="#M_MAM03918r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/rsv"/>
@@ -129901,10 +129953,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03780r" sboTerm="SBO:0000247" id="MAM03780r" name="N-desmethyl-rosuvastatin" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C42H48CaF2N6O12S2">
+      <species metaid="M_MAM03780r" sboTerm="SBO:0000247" id="M_MAM03780r" name="N-desmethyl-rosuvastatin" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C42H48CaF2N6O12S2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03780r">
+            <rdf:Description rdf:about="#M_MAM03780r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ndersv"/>
@@ -129915,10 +129967,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03780c" sboTerm="SBO:0000247" id="MAM03780c" name="N-desmethyl-rosuvastatin" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C42H48CaF2N6O12S2">
+      <species metaid="M_MAM03780c" sboTerm="SBO:0000247" id="M_MAM03780c" name="N-desmethyl-rosuvastatin" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C42H48CaF2N6O12S2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03780c">
+            <rdf:Description rdf:about="#M_MAM03780c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ndersv"/>
@@ -129929,10 +129981,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM03781r" sboTerm="SBO:0000247" id="MAM03781r" name="acid metabolite of nifedipine" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C16H13N2O6">
+      <species metaid="M_MAM03781r" sboTerm="SBO:0000247" id="M_MAM03781r" name="acid metabolite of nifedipine" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C16H13N2O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03781r">
+            <rdf:Description rdf:about="#M_MAM03781r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/nfdac"/>
@@ -129943,10 +129995,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03784r" sboTerm="SBO:0000247" id="MAM03784r" name="hydroxy metabolite of nifedipine" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C16H13N2O7">
+      <species metaid="M_MAM03784r" sboTerm="SBO:0000247" id="M_MAM03784r" name="hydroxy metabolite of nifedipine" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C16H13N2O7">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03784r">
+            <rdf:Description rdf:about="#M_MAM03784r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/nfdoh"/>
@@ -129957,10 +130009,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03781c" sboTerm="SBO:0000247" id="MAM03781c" name="acid metabolite of nifedipine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C16H13N2O6">
+      <species metaid="M_MAM03781c" sboTerm="SBO:0000247" id="M_MAM03781c" name="acid metabolite of nifedipine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C16H13N2O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03781c">
+            <rdf:Description rdf:about="#M_MAM03781c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/nfdac"/>
@@ -129971,10 +130023,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03783r" sboTerm="SBO:0000247" id="MAM03783r" name="Nitropyridine metabolite of nifedipine" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C17H16N2O6">
+      <species metaid="M_MAM03783r" sboTerm="SBO:0000247" id="M_MAM03783r" name="Nitropyridine metabolite of nifedipine" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C17H16N2O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03783r">
+            <rdf:Description rdf:about="#M_MAM03783r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/nfdnpy"/>
@@ -129985,10 +130037,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03784c" sboTerm="SBO:0000247" id="MAM03784c" name="hydroxy metabolite of nifedipine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C16H13N2O7">
+      <species metaid="M_MAM03784c" sboTerm="SBO:0000247" id="M_MAM03784c" name="hydroxy metabolite of nifedipine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C16H13N2O7">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03784c">
+            <rdf:Description rdf:about="#M_MAM03784c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/nfdoh"/>
@@ -129999,10 +130051,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03782c" sboTerm="SBO:0000247" id="MAM03782c" name="lactone form of nifedipine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C16H12N2O6">
+      <species metaid="M_MAM03782c" sboTerm="SBO:0000247" id="M_MAM03782c" name="lactone form of nifedipine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C16H12N2O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03782c">
+            <rdf:Description rdf:about="#M_MAM03782c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/nfdlac"/>
@@ -130013,10 +130065,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03783c" sboTerm="SBO:0000247" id="MAM03783c" name="Nitropyridine metabolite of nifedipine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C17H16N2O6">
+      <species metaid="M_MAM03783c" sboTerm="SBO:0000247" id="M_MAM03783c" name="Nitropyridine metabolite of nifedipine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C17H16N2O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03783c">
+            <rdf:Description rdf:about="#M_MAM03783c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/nfdnpy"/>
@@ -130027,10 +130079,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM04059c" sboTerm="SBO:0000247" id="MAM04059c" name="udp-ribose" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C14H20N2O17P2">
+      <species metaid="M_MAM04059c" sboTerm="SBO:0000247" id="M_MAM04059c" name="udp-ribose" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C14H20N2O17P2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM04059c">
+            <rdf:Description rdf:about="#M_MAM04059c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/udprib"/>
@@ -130041,10 +130093,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03799c" sboTerm="SBO:0000247" id="MAM03799c" name="oxypurinol-1-riboside" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H12N4O7">
+      <species metaid="M_MAM03799c" sboTerm="SBO:0000247" id="M_MAM03799c" name="oxypurinol-1-riboside" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H12N4O7">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03799c">
+            <rdf:Description rdf:about="#M_MAM03799c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/oxy1rb"/>
@@ -130055,10 +130107,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03800c" sboTerm="SBO:0000247" id="MAM03800c" name="oxypurinol-7-riboside" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H12N4O7">
+      <species metaid="M_MAM03800c" sboTerm="SBO:0000247" id="M_MAM03800c" name="oxypurinol-7-riboside" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H12N4O7">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03800c">
+            <rdf:Description rdf:about="#M_MAM03800c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/oxy7rb"/>
@@ -130070,10 +130122,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03580x" sboTerm="SBO:0000247" id="MAM03580x" name="fluvastatin-CoA form" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C45H56FN8NaO19P3S">
+      <species metaid="M_MAM03580x" sboTerm="SBO:0000247" id="M_MAM03580x" name="fluvastatin-CoA form" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C45H56FN8NaO19P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03580x">
+            <rdf:Description rdf:about="#M_MAM03580x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/fvscoa"/>
@@ -130084,10 +130136,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03893x" sboTerm="SBO:0000247" id="MAM03893x" name="des-isoproylpropionic-acid-fluvastatin-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C37H42FN8NaO17P3S">
+      <species metaid="M_MAM03893x" sboTerm="SBO:0000247" id="M_MAM03893x" name="des-isoproylpropionic-acid-fluvastatin-CoA" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C37H42FN8NaO17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03893x">
+            <rdf:Description rdf:about="#M_MAM03893x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/profvscoa"/>
@@ -130098,10 +130150,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03893c" sboTerm="SBO:0000247" id="MAM03893c" name="des-isoproylpropionic-acid-fluvastatin-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C37H42FN8NaO17P3S">
+      <species metaid="M_MAM03893c" sboTerm="SBO:0000247" id="M_MAM03893c" name="des-isoproylpropionic-acid-fluvastatin-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C37H42FN8NaO17P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03893c">
+            <rdf:Description rdf:about="#M_MAM03893c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/profvscoa"/>
@@ -130112,10 +130164,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03892c" sboTerm="SBO:0000247" id="MAM03892c" name="des-isoproylpropionic-acid-fluvastatin" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H16FNNaO2">
+      <species metaid="M_MAM03892c" sboTerm="SBO:0000247" id="M_MAM03892c" name="des-isoproylpropionic-acid-fluvastatin" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H16FNNaO2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03892c">
+            <rdf:Description rdf:about="#M_MAM03892c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/profvs"/>
@@ -130126,10 +130178,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03911c" sboTerm="SBO:0000247" id="MAM03911c" name="pitavastatin" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C50H46CaF2N2O8">
+      <species metaid="M_MAM03911c" sboTerm="SBO:0000247" id="M_MAM03911c" name="pitavastatin" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C50H46CaF2N2O8">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03911c">
+            <rdf:Description rdf:about="#M_MAM03911c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ptvst"/>
@@ -130140,10 +130192,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03911r" sboTerm="SBO:0000247" id="MAM03911r" name="pitavastatin" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C50H46CaF2N2O8">
+      <species metaid="M_MAM03911r" sboTerm="SBO:0000247" id="M_MAM03911r" name="pitavastatin" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C50H46CaF2N2O8">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03911r">
+            <rdf:Description rdf:about="#M_MAM03911r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ptvst"/>
@@ -130154,10 +130206,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03912r" sboTerm="SBO:0000247" id="MAM03912r" name="pitavastatin-glucuronide" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C62H62CaF2N2O20">
+      <species metaid="M_MAM03912r" sboTerm="SBO:0000247" id="M_MAM03912r" name="pitavastatin-glucuronide" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C62H62CaF2N2O20">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03912r">
+            <rdf:Description rdf:about="#M_MAM03912r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ptvstgluc"/>
@@ -130168,10 +130220,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03913r" sboTerm="SBO:0000247" id="MAM03913r" name="pitavastatin-lactone" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="C50H44CaF2N2O6">
+      <species metaid="M_MAM03913r" sboTerm="SBO:0000247" id="M_MAM03913r" name="pitavastatin-lactone" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="C50H44CaF2N2O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03913r">
+            <rdf:Description rdf:about="#M_MAM03913r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ptvstlac"/>
@@ -130182,10 +130234,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03913c" sboTerm="SBO:0000247" id="MAM03913c" name="pitavastatin-lactone" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="C50H44CaF2N2O6">
+      <species metaid="M_MAM03913c" sboTerm="SBO:0000247" id="M_MAM03913c" name="pitavastatin-lactone" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="C50H44CaF2N2O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03913c">
+            <rdf:Description rdf:about="#M_MAM03913c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ptvstlac"/>
@@ -130196,10 +130248,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03914r" sboTerm="SBO:0000247" id="MAM03914r" name="pitavastatin-M13" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C50H46CaF2N2O10">
+      <species metaid="M_MAM03914r" sboTerm="SBO:0000247" id="M_MAM03914r" name="pitavastatin-M13" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C50H46CaF2N2O10">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03914r">
+            <rdf:Description rdf:about="#M_MAM03914r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ptvstm13"/>
@@ -130210,10 +130262,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03915c" sboTerm="SBO:0000247" id="MAM03915c" name="pitavastatin-M3" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C50H42CaF2N2O8">
+      <species metaid="M_MAM03915c" sboTerm="SBO:0000247" id="M_MAM03915c" name="pitavastatin-M3" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C50H42CaF2N2O8">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03915c">
+            <rdf:Description rdf:about="#M_MAM03915c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ptvstm3"/>
@@ -130224,10 +130276,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03915r" sboTerm="SBO:0000247" id="MAM03915r" name="pitavastatin-M3" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C50H42CaF2N2O8">
+      <species metaid="M_MAM03915r" sboTerm="SBO:0000247" id="M_MAM03915r" name="pitavastatin-M3" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C50H42CaF2N2O8">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03915r">
+            <rdf:Description rdf:about="#M_MAM03915r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ptvstm3"/>
@@ -130238,10 +130290,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03917r" sboTerm="SBO:0000247" id="MAM03917r" name="pravastatin glucuronide" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C29H42NaO13">
+      <species metaid="M_MAM03917r" sboTerm="SBO:0000247" id="M_MAM03917r" name="pravastatin glucuronide" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C29H42NaO13">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03917r">
+            <rdf:Description rdf:about="#M_MAM03917r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pvsgluc"/>
@@ -130252,10 +130304,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03917c" sboTerm="SBO:0000247" id="MAM03917c" name="pravastatin glucuronide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C29H42NaO13">
+      <species metaid="M_MAM03917c" sboTerm="SBO:0000247" id="M_MAM03917c" name="pravastatin glucuronide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C29H42NaO13">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03917c">
+            <rdf:Description rdf:about="#M_MAM03917c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pvsgluc"/>
@@ -130266,10 +130318,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03918c" sboTerm="SBO:0000247" id="MAM03918c" name="rosuvastatin" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C44H54CaF2N6O12S2">
+      <species metaid="M_MAM03918c" sboTerm="SBO:0000247" id="M_MAM03918c" name="rosuvastatin" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C44H54CaF2N6O12S2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03918c">
+            <rdf:Description rdf:about="#M_MAM03918c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/rsv"/>
@@ -130280,10 +130332,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03919r" sboTerm="SBO:0000247" id="MAM03919r" name="rosuvastatin-glucuronide" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C56H70CaF2N6O24S2">
+      <species metaid="M_MAM03919r" sboTerm="SBO:0000247" id="M_MAM03919r" name="rosuvastatin-glucuronide" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C56H70CaF2N6O24S2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03919r">
+            <rdf:Description rdf:about="#M_MAM03919r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/rsvgluc"/>
@@ -130294,10 +130346,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03920r" sboTerm="SBO:0000247" id="MAM03920r" name="rosuvastatin-5S-lactone" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="C44H52CaF2N6O10S2">
+      <species metaid="M_MAM03920r" sboTerm="SBO:0000247" id="M_MAM03920r" name="rosuvastatin-5S-lactone" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="C44H52CaF2N6O10S2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03920r">
+            <rdf:Description rdf:about="#M_MAM03920r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/rsvlac"/>
@@ -130308,10 +130360,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03920c" sboTerm="SBO:0000247" id="MAM03920c" name="rosuvastatin-5S-lactone" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="C44H52CaF2N6O10S2">
+      <species metaid="M_MAM03920c" sboTerm="SBO:0000247" id="M_MAM03920c" name="rosuvastatin-5S-lactone" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="C44H52CaF2N6O10S2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03920c">
+            <rdf:Description rdf:about="#M_MAM03920c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/rsvlac"/>
@@ -130322,10 +130374,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03921c" sboTerm="SBO:0000247" id="MAM03921c" name="sulphate-conjugate-3-methoxy-acetaminophen" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C8H8NO6S">
+      <species metaid="M_MAM03921c" sboTerm="SBO:0000247" id="M_MAM03921c" name="sulphate-conjugate-3-methoxy-acetaminophen" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C8H8NO6S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03921c">
+            <rdf:Description rdf:about="#M_MAM03921c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/s3meacmp"/>
@@ -130336,10 +130388,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03935c" sboTerm="SBO:0000247" id="MAM03935c" name="simvastatin dihydroxy acid form" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C25H39O6">
+      <species metaid="M_MAM03935c" sboTerm="SBO:0000247" id="M_MAM03935c" name="simvastatin dihydroxy acid form" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C25H39O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03935c">
+            <rdf:Description rdf:about="#M_MAM03935c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/smvacid"/>
@@ -130350,10 +130402,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03932r" sboTerm="SBO:0000247" id="MAM03932r" name="simvastatin-acyl-glucuronide" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C31H47O12">
+      <species metaid="M_MAM03932r" sboTerm="SBO:0000247" id="M_MAM03932r" name="simvastatin-acyl-glucuronide" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C31H47O12">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03932r">
+            <rdf:Description rdf:about="#M_MAM03932r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/simvgluc"/>
@@ -130364,10 +130416,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03935r" sboTerm="SBO:0000247" id="MAM03935r" name="simvastatin dihydroxy acid form" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C25H39O6">
+      <species metaid="M_MAM03935r" sboTerm="SBO:0000247" id="M_MAM03935r" name="simvastatin dihydroxy acid form" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C25H39O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03935r">
+            <rdf:Description rdf:about="#M_MAM03935r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/smvacid"/>
@@ -130378,10 +130430,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03934c" sboTerm="SBO:0000247" id="MAM03934c" name="simvastatin lactone form" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H38O5">
+      <species metaid="M_MAM03934c" sboTerm="SBO:0000247" id="M_MAM03934c" name="simvastatin lactone form" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H38O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03934c">
+            <rdf:Description rdf:about="#M_MAM03934c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/smv"/>
@@ -130392,10 +130444,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03999c" sboTerm="SBO:0000247" id="MAM03999c" name="thiomethyl-conjugate-acetaminophen" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H11NO2S">
+      <species metaid="M_MAM03999c" sboTerm="SBO:0000247" id="M_MAM03999c" name="thiomethyl-conjugate-acetaminophen" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H11NO2S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03999c">
+            <rdf:Description rdf:about="#M_MAM03999c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/tmacmp"/>
@@ -130406,10 +130458,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03952c" sboTerm="SBO:0000247" id="MAM03952c" name="sulphate-conjugate of thiomethyl-acetaminophen" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C9H10NO5S2">
+      <species metaid="M_MAM03952c" sboTerm="SBO:0000247" id="M_MAM03952c" name="sulphate-conjugate of thiomethyl-acetaminophen" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C9H10NO5S2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03952c">
+            <rdf:Description rdf:about="#M_MAM03952c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/stacmp"/>
@@ -130420,10 +130472,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03959c" sboTerm="SBO:0000247" id="MAM03959c" name="Tacrolimus" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C44H69NO12">
+      <species metaid="M_MAM03959c" sboTerm="SBO:0000247" id="M_MAM03959c" name="Tacrolimus" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C44H69NO12">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03959c">
+            <rdf:Description rdf:about="#M_MAM03959c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/tacr"/>
@@ -130434,10 +130486,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03985c" sboTerm="SBO:0000247" id="MAM03985c" name="threo-isomer of fluvastain" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C24H25FNNaO4">
+      <species metaid="M_MAM03985c" sboTerm="SBO:0000247" id="M_MAM03985c" name="threo-isomer of fluvastain" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C24H25FNNaO4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03985c">
+            <rdf:Description rdf:about="#M_MAM03985c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/thrfvs"/>
@@ -130448,10 +130500,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03995r" sboTerm="SBO:0000247" id="MAM03995r" name="thiomethyl-sulphoxide-conjugate-acetaminophen" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H11NO3S">
+      <species metaid="M_MAM03995r" sboTerm="SBO:0000247" id="M_MAM03995r" name="thiomethyl-sulphoxide-conjugate-acetaminophen" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H11NO3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03995r">
+            <rdf:Description rdf:about="#M_MAM03995r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/thsacmp"/>
@@ -130462,10 +130514,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03998c" sboTerm="SBO:0000247" id="MAM03998c" name="trans-lactone-fluvastatin" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C24H23FNNaO3">
+      <species metaid="M_MAM03998c" sboTerm="SBO:0000247" id="M_MAM03998c" name="trans-lactone-fluvastatin" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C24H23FNNaO3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03998c">
+            <rdf:Description rdf:about="#M_MAM03998c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/tlacfvs"/>
@@ -130476,10 +130528,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM04001c" sboTerm="SBO:0000247" id="MAM04001c" name="Torasemide-M1" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C16H19N4O4S">
+      <species metaid="M_MAM04001c" sboTerm="SBO:0000247" id="M_MAM04001c" name="Torasemide-M1" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C16H19N4O4S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM04001c">
+            <rdf:Description rdf:about="#M_MAM04001c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/tmdm1"/>
@@ -130490,10 +130542,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM04000r" sboTerm="SBO:0000247" id="MAM04000r" name="Torasemide" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C16H19N4O3S">
+      <species metaid="M_MAM04000r" sboTerm="SBO:0000247" id="M_MAM04000r" name="Torasemide" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C16H19N4O3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM04000r">
+            <rdf:Description rdf:about="#M_MAM04000r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/tmd"/>
@@ -130504,10 +130556,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM04001r" sboTerm="SBO:0000247" id="MAM04001r" name="Torasemide-M1" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C16H19N4O4S">
+      <species metaid="M_MAM04001r" sboTerm="SBO:0000247" id="M_MAM04001r" name="Torasemide-M1" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C16H19N4O4S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM04001r">
+            <rdf:Description rdf:about="#M_MAM04001r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/tmdm1"/>
@@ -130518,10 +130570,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM04002c" sboTerm="SBO:0000247" id="MAM04002c" name="Torasemide-M3" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C16H19N4O4S">
+      <species metaid="M_MAM04002c" sboTerm="SBO:0000247" id="M_MAM04002c" name="Torasemide-M3" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C16H19N4O4S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM04002c">
+            <rdf:Description rdf:about="#M_MAM04002c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/tmdm3"/>
@@ -130532,10 +130584,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM04002r" sboTerm="SBO:0000247" id="MAM04002r" name="Torasemide-M3" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C16H19N4O4S">
+      <species metaid="M_MAM04002r" sboTerm="SBO:0000247" id="M_MAM04002r" name="Torasemide-M3" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C16H19N4O4S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM04002r">
+            <rdf:Description rdf:about="#M_MAM04002r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/tmdm3"/>
@@ -130546,10 +130598,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM04003c" sboTerm="SBO:0000247" id="MAM04003c" name="Torasemide-M5" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C16H16N4O5S">
+      <species metaid="M_MAM04003c" sboTerm="SBO:0000247" id="M_MAM04003c" name="Torasemide-M5" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C16H16N4O5S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM04003c">
+            <rdf:Description rdf:about="#M_MAM04003c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/tmdm5"/>
@@ -130560,10 +130612,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM04003r" sboTerm="SBO:0000247" id="MAM04003r" name="Torasemide-M5" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C16H16N4O5S">
+      <species metaid="M_MAM04003r" sboTerm="SBO:0000247" id="M_MAM04003r" name="Torasemide-M5" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C16H16N4O5S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM04003r">
+            <rdf:Description rdf:about="#M_MAM04003r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/tmdm5"/>
@@ -130574,10 +130626,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM04000c" sboTerm="SBO:0000247" id="MAM04000c" name="Torasemide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C16H19N4O3S">
+      <species metaid="M_MAM04000c" sboTerm="SBO:0000247" id="M_MAM04000c" name="Torasemide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C16H19N4O3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM04000c">
+            <rdf:Description rdf:about="#M_MAM04000c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/tmd"/>
@@ -130588,10 +130640,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM04007c" sboTerm="SBO:0000247" id="MAM04007c" name="triol metabolite of pravastatin" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H37NaO9">
+      <species metaid="M_MAM04007c" sboTerm="SBO:0000247" id="M_MAM04007c" name="triol metabolite of pravastatin" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H37NaO9">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM04007c">
+            <rdf:Description rdf:about="#M_MAM04007c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/tripvs"/>
@@ -130602,10 +130654,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM04038c" sboTerm="SBO:0000247" id="MAM04038c" name="thiomethyl-sulphoxide-acetaminophen-glucuronide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C15H18NO9S">
+      <species metaid="M_MAM04038c" sboTerm="SBO:0000247" id="M_MAM04038c" name="thiomethyl-sulphoxide-acetaminophen-glucuronide" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C15H18NO9S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM04038c">
+            <rdf:Description rdf:about="#M_MAM04038c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/tsacmgluc"/>
@@ -130616,10 +130668,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM04038r" sboTerm="SBO:0000247" id="MAM04038r" name="thiomethyl-sulphoxide-acetaminophen-glucuronide" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C15H18NO9S">
+      <species metaid="M_MAM04038r" sboTerm="SBO:0000247" id="M_MAM04038r" name="thiomethyl-sulphoxide-acetaminophen-glucuronide" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C15H18NO9S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM04038r">
+            <rdf:Description rdf:about="#M_MAM04038r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/tsacmgluc"/>
@@ -130630,10 +130682,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03995c" sboTerm="SBO:0000247" id="MAM03995c" name="thiomethyl-sulphoxide-conjugate-acetaminophen" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H11NO3S">
+      <species metaid="M_MAM03995c" sboTerm="SBO:0000247" id="M_MAM03995c" name="thiomethyl-sulphoxide-conjugate-acetaminophen" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H11NO3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03995c">
+            <rdf:Description rdf:about="#M_MAM03995c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/thsacmp"/>
@@ -130644,10 +130696,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM04039c" sboTerm="SBO:0000247" id="MAM04039c" name="thiomethyl-sulphoxide-acetaminophen-sulphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C9H10NO6S2">
+      <species metaid="M_MAM04039c" sboTerm="SBO:0000247" id="M_MAM04039c" name="thiomethyl-sulphoxide-acetaminophen-sulphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C9H10NO6S2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM04039c">
+            <rdf:Description rdf:about="#M_MAM04039c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/tsacmsul"/>
@@ -130658,10 +130710,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03236c" sboTerm="SBO:0000247" id="MAM03236c" name="3&apos;-S-hydroxy-pravastatin-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C44H66N7NaO23P3S">
+      <species metaid="M_MAM03236c" sboTerm="SBO:0000247" id="M_MAM03236c" name="3&apos;-S-hydroxy-pravastatin-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C44H66N7NaO23P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03236c">
+            <rdf:Description rdf:about="#M_MAM03236c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/3hpvscoa"/>
@@ -130672,10 +130724,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03238c" sboTerm="SBO:0000247" id="MAM03238c" name="3&apos;-S-hydroxy-pravastatin-tetranor-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C40H58N7NaO21P3S">
+      <species metaid="M_MAM03238c" sboTerm="SBO:0000247" id="M_MAM03238c" name="3&apos;-S-hydroxy-pravastatin-tetranor-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C40H58N7NaO21P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03238c">
+            <rdf:Description rdf:about="#M_MAM03238c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/3hpvstetcoa"/>
@@ -130686,10 +130738,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03580c" sboTerm="SBO:0000247" id="MAM03580c" name="fluvastatin-CoA form" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C45H56FN8NaO19P3S">
+      <species metaid="M_MAM03580c" sboTerm="SBO:0000247" id="M_MAM03580c" name="fluvastatin-CoA form" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C45H56FN8NaO19P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03580c">
+            <rdf:Description rdf:about="#M_MAM03580c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/fvscoa"/>
@@ -130700,10 +130752,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03757r" sboTerm="SBO:0000247" id="MAM03757r" name="Midazolam-glucuronide" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H21ClFN3O6">
+      <species metaid="M_MAM03757r" sboTerm="SBO:0000247" id="M_MAM03757r" name="Midazolam-glucuronide" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H21ClFN3O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03757r">
+            <rdf:Description rdf:about="#M_MAM03757r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/mdzglc"/>
@@ -130714,10 +130766,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03914c" sboTerm="SBO:0000247" id="MAM03914c" name="pitavastatin-M13" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C50H46CaF2N2O10">
+      <species metaid="M_MAM03914c" sboTerm="SBO:0000247" id="M_MAM03914c" name="pitavastatin-M13" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C50H46CaF2N2O10">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03914c">
+            <rdf:Description rdf:about="#M_MAM03914c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ptvstm13"/>
@@ -130728,10 +130780,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03914e" sboTerm="SBO:0000247" id="MAM03914e" name="pitavastatin-M13" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C50H46CaF2N2O10">
+      <species metaid="M_MAM03914e" sboTerm="SBO:0000247" id="M_MAM03914e" name="pitavastatin-M13" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C50H46CaF2N2O10">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03914e">
+            <rdf:Description rdf:about="#M_MAM03914e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ptvstm13"/>
@@ -130742,10 +130794,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03404r" sboTerm="SBO:0000247" id="MAM03404r" name="acetaminophen-glutathione-conjugate" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H27N4O10S">
+      <species metaid="M_MAM03404r" sboTerm="SBO:0000247" id="M_MAM03404r" name="acetaminophen-glutathione-conjugate" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H27N4O10S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03404r">
+            <rdf:Description rdf:about="#M_MAM03404r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/acmpglut"/>
@@ -130757,10 +130809,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03526r" sboTerm="SBO:0000247" id="MAM03526r" name="cysteine-conjugate-acetaminophen" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C11H14N2O4S">
+      <species metaid="M_MAM03526r" sboTerm="SBO:0000247" id="M_MAM03526r" name="cysteine-conjugate-acetaminophen" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C11H14N2O4S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03526r">
+            <rdf:Description rdf:about="#M_MAM03526r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/cysacmp"/>
@@ -130771,10 +130823,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01986r" sboTerm="SBO:0000247" id="MAM01986r" name="glycine" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C2H5NO2">
+      <species metaid="M_MAM01986r" sboTerm="SBO:0000247" id="M_MAM01986r" name="glycine" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C2H5NO2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01986r">
+            <rdf:Description rdf:about="#M_MAM01986r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/gly"/>
@@ -130791,10 +130843,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03779r" sboTerm="SBO:0000247" id="MAM03779r" name="NAPQI" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H7NO2">
+      <species metaid="M_MAM03779r" sboTerm="SBO:0000247" id="M_MAM03779r" name="NAPQI" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H7NO2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03779r">
+            <rdf:Description rdf:about="#M_MAM03779r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/napqi"/>
@@ -130805,10 +130857,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02682r" sboTerm="SBO:0000247" id="MAM02682r" name="PAPS" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C10H11N5O13P2S">
+      <species metaid="M_MAM02682r" sboTerm="SBO:0000247" id="M_MAM02682r" name="PAPS" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C10H11N5O13P2S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02682r">
+            <rdf:Description rdf:about="#M_MAM02682r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/paps"/>
@@ -130824,10 +130876,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02681r" sboTerm="SBO:0000247" id="MAM02681r" name="PAP" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C10H11N5O10P2">
+      <species metaid="M_MAM02681r" sboTerm="SBO:0000247" id="M_MAM02681r" name="PAP" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C10H11N5O10P2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02681r">
+            <rdf:Description rdf:about="#M_MAM02681r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pap"/>
@@ -130843,10 +130895,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01442m" sboTerm="SBO:0000247" id="MAM01442m" name="chloride" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="Cl">
+      <species metaid="M_MAM01442m" sboTerm="SBO:0000247" id="M_MAM01442m" name="chloride" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="Cl">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01442m">
+            <rdf:Description rdf:about="#M_MAM01442m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/cl"/>
@@ -130862,10 +130914,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00519c" sboTerm="SBO:0000247" id="MAM00519c" name="1-alpha,25-dihydroxyvitamin D2" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C28H44O3">
+      <species metaid="M_MAM00519c" sboTerm="SBO:0000247" id="M_MAM00519c" name="1-alpha,25-dihydroxyvitamin D2" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C28H44O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00519c">
+            <rdf:Description rdf:about="#M_MAM00519c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/1a25dhvitd2"/>
@@ -130880,10 +130932,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00519e" sboTerm="SBO:0000247" id="MAM00519e" name="1-alpha,25-dihydroxyvitamin D2" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C28H44O3">
+      <species metaid="M_MAM00519e" sboTerm="SBO:0000247" id="M_MAM00519e" name="1-alpha,25-dihydroxyvitamin D2" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C28H44O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00519e">
+            <rdf:Description rdf:about="#M_MAM00519e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/1a25dhvitd2"/>
@@ -130898,10 +130950,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02039i" sboTerm="SBO:0000247" id="MAM02039i" name="H+" compartment="i" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="H">
+      <species metaid="M_MAM02039i" sboTerm="SBO:0000247" id="M_MAM02039i" name="H+" compartment="i" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="H">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02039i">
+            <rdf:Description rdf:about="#M_MAM02039i">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/h"/>
@@ -130916,10 +130968,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02751i" sboTerm="SBO:0000247" id="MAM02751i" name="Pi" compartment="i" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="HO4P">
+      <species metaid="M_MAM02751i" sboTerm="SBO:0000247" id="M_MAM02751i" name="Pi" compartment="i" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="HO4P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02751i">
+            <rdf:Description rdf:about="#M_MAM02751i">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/pi"/>
@@ -130934,10 +130986,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM03971e" sboTerm="SBO:0000247" id="MAM03971e" name="biomass" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="X">
+      <species metaid="M_MAM03971e" sboTerm="SBO:0000247" id="M_MAM03971e" name="biomass" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="X">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM03971e">
+            <rdf:Description rdf:about="#M_MAM03971e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/BIOMASS"/>
@@ -130948,10 +131000,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM10001e" sboTerm="SBO:0000247" id="MAM10001e" name="steroids" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
+      <species metaid="M_MAM10001e" sboTerm="SBO:0000247" id="M_MAM10001e" name="steroids" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#meta_MAM10001e">
+            <rdf:Description rdf:about="#meta_M_MAM10001e">
               <bqbiol:is>
                 <rdf:Bag/>
               </bqbiol:is>
@@ -130959,10 +131011,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM10002e" sboTerm="SBO:0000247" id="MAM10002e" name="xenobiotics" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
+      <species metaid="M_MAM10002e" sboTerm="SBO:0000247" id="M_MAM10002e" name="xenobiotics" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#meta_MAM10002e">
+            <rdf:Description rdf:about="#meta_M_MAM10002e">
               <bqbiol:is>
                 <rdf:Bag/>
               </bqbiol:is>
@@ -130970,10 +131022,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM10003e" sboTerm="SBO:0000247" id="MAM10003e" name="arachidonate derivatives" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
+      <species metaid="M_MAM10003e" sboTerm="SBO:0000247" id="M_MAM10003e" name="arachidonate derivatives" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#meta_MAM10003e">
+            <rdf:Description rdf:about="#meta_M_MAM10003e">
               <bqbiol:is>
                 <rdf:Bag/>
               </bqbiol:is>
@@ -130981,10 +131033,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM10004r" sboTerm="SBO:0000247" id="MAM10004r" name="cholesterol-ester plasma pool" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C28H45O2R">
+      <species metaid="M_MAM10004r" sboTerm="SBO:0000247" id="M_MAM10004r" name="cholesterol-ester plasma pool" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C28H45O2R">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM10004r">
+            <rdf:Description rdf:about="#M_MAM10004r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/xolest2_hs"/>
@@ -130997,10 +131049,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM10004l" sboTerm="SBO:0000247" id="MAM10004l" name="cholesterol-ester plasma pool" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C28H45O2R">
+      <species metaid="M_MAM10004l" sboTerm="SBO:0000247" id="M_MAM10004l" name="cholesterol-ester plasma pool" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C28H45O2R">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM10004l">
+            <rdf:Description rdf:about="#M_MAM10004l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/xolest2_hs"/>
@@ -131013,10 +131065,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM10005e" sboTerm="SBO:0000247" id="MAM10005e" name="fatty acid pool" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="CO2R">
+      <species metaid="M_MAM10005e" sboTerm="SBO:0000247" id="M_MAM10005e" name="fatty acid pool" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="CO2R">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM10005e">
+            <rdf:Description rdf:about="#M_MAM10005e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/Rtotal"/>
@@ -131030,10 +131082,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM10005c" sboTerm="SBO:0000247" id="MAM10005c" name="fatty acid pool" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="CO2R">
+      <species metaid="M_MAM10005c" sboTerm="SBO:0000247" id="M_MAM10005c" name="fatty acid pool" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="CO2R">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM10005c">
+            <rdf:Description rdf:about="#M_MAM10005c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/Rtotal"/>
@@ -131047,10 +131099,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM10005l" sboTerm="SBO:0000247" id="MAM10005l" name="fatty acid pool" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="CO2R">
+      <species metaid="M_MAM10005l" sboTerm="SBO:0000247" id="M_MAM10005l" name="fatty acid pool" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="CO2R">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM10005l">
+            <rdf:Description rdf:about="#M_MAM10005l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/Rtotal"/>
@@ -131064,10 +131116,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM10005r" sboTerm="SBO:0000247" id="MAM10005r" name="fatty acid pool" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="CO2R">
+      <species metaid="M_MAM10005r" sboTerm="SBO:0000247" id="M_MAM10005r" name="fatty acid pool" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="CO2R">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM10005r">
+            <rdf:Description rdf:about="#M_MAM10005r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/Rtotal"/>
@@ -131081,10 +131133,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM10005x" sboTerm="SBO:0000247" id="MAM10005x" name="fatty acid pool" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="CO2R">
+      <species metaid="M_MAM10005x" sboTerm="SBO:0000247" id="M_MAM10005x" name="fatty acid pool" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="CO2R">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM10005x">
+            <rdf:Description rdf:about="#M_MAM10005x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/Rtotal"/>
@@ -131098,10 +131150,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM10006e" sboTerm="SBO:0000247" id="MAM10006e" name="1-acylglycerol-3P pool" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C4H6O7PR">
+      <species metaid="M_MAM10006e" sboTerm="SBO:0000247" id="M_MAM10006e" name="1-acylglycerol-3P pool" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C4H6O7PR">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM10006e">
+            <rdf:Description rdf:about="#M_MAM10006e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:16975"/>
@@ -131114,10 +131166,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM10006m" sboTerm="SBO:0000247" id="MAM10006m" name="1-acylglycerol-3P pool" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C4H6O7PR">
+      <species metaid="M_MAM10006m" sboTerm="SBO:0000247" id="M_MAM10006m" name="1-acylglycerol-3P pool" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C4H6O7PR">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM10006m">
+            <rdf:Description rdf:about="#M_MAM10006m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:16975"/>
@@ -131130,10 +131182,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM10006c" sboTerm="SBO:0000247" id="MAM10006c" name="1-acylglycerol-3P pool" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C4H6O7PR">
+      <species metaid="M_MAM10006c" sboTerm="SBO:0000247" id="M_MAM10006c" name="1-acylglycerol-3P pool" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C4H6O7PR">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM10006c">
+            <rdf:Description rdf:about="#M_MAM10006c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:16975"/>
@@ -131146,10 +131198,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM10007c" sboTerm="SBO:0000247" id="MAM10007c" name="acyl-CoA pool" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C22H31N7O17P3SR">
+      <species metaid="M_MAM10007c" sboTerm="SBO:0000247" id="M_MAM10007c" name="acyl-CoA pool" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C22H31N7O17P3SR">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM10007c">
+            <rdf:Description rdf:about="#M_MAM10007c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/acoa"/>
@@ -131163,10 +131215,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM10007m" sboTerm="SBO:0000247" id="MAM10007m" name="acyl-CoA pool" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C22H31N7O17P3SR">
+      <species metaid="M_MAM10007m" sboTerm="SBO:0000247" id="M_MAM10007m" name="acyl-CoA pool" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C22H31N7O17P3SR">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM10007m">
+            <rdf:Description rdf:about="#M_MAM10007m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/acoa"/>
@@ -131180,10 +131232,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM10007g" sboTerm="SBO:0000247" id="MAM10007g" name="acyl-CoA pool" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C22H31N7O17P3SR">
+      <species metaid="M_MAM10007g" sboTerm="SBO:0000247" id="M_MAM10007g" name="acyl-CoA pool" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C22H31N7O17P3SR">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM10007g">
+            <rdf:Description rdf:about="#M_MAM10007g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/acoa"/>
@@ -131197,10 +131249,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM10007x" sboTerm="SBO:0000247" id="MAM10007x" name="acyl-CoA pool" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C22H31N7O17P3SR">
+      <species metaid="M_MAM10007x" sboTerm="SBO:0000247" id="M_MAM10007x" name="acyl-CoA pool" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C22H31N7O17P3SR">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM10007x">
+            <rdf:Description rdf:about="#M_MAM10007x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/acoa"/>
@@ -131214,10 +131266,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM10008c" sboTerm="SBO:0000247" id="MAM10008c" name="protein C terminal" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="CO2R">
+      <species metaid="M_MAM10008c" sboTerm="SBO:0000247" id="M_MAM10008c" name="protein C terminal" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="CO2R">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM10008c">
+            <rdf:Description rdf:about="#M_MAM10008c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:33711"/>
@@ -131227,10 +131279,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM10009c" sboTerm="SBO:0000247" id="MAM10009c" name="protein N terminal" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="H3NR">
+      <species metaid="M_MAM10009c" sboTerm="SBO:0000247" id="M_MAM10009c" name="protein N terminal" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="H3NR">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM10009c">
+            <rdf:Description rdf:about="#M_MAM10009c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:33712"/>
@@ -131240,10 +131292,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM10010c" sboTerm="SBO:0000247" id="MAM10010c" name="S-[(2E,6E)-farnesyl]-L-cysteine methyl ester" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C19H34NO2S">
+      <species metaid="M_MAM10010c" sboTerm="SBO:0000247" id="M_MAM10010c" name="S-[(2E,6E)-farnesyl]-L-cysteine methyl ester" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C19H34NO2S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM10010c">
+            <rdf:Description rdf:about="#M_MAM10010c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:87167"/>
@@ -131253,10 +131305,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM10011c" sboTerm="SBO:0000247" id="MAM10011c" name="N-formyl-L-glutamate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H7NO5">
+      <species metaid="M_MAM10011c" sboTerm="SBO:0000247" id="M_MAM10011c" name="N-formyl-L-glutamate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H7NO5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM10011c">
+            <rdf:Description rdf:about="#M_MAM10011c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/Nforglu"/>
@@ -131269,10 +131321,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM10011e" sboTerm="SBO:0000247" id="MAM10011e" name="N-formyl-L-glutamate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H7NO5">
+      <species metaid="M_MAM10011e" sboTerm="SBO:0000247" id="M_MAM10011e" name="N-formyl-L-glutamate" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H7NO5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM10011e">
+            <rdf:Description rdf:about="#M_MAM10011e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/Nforglu"/>
@@ -131285,10 +131337,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02956c" sboTerm="SBO:0000247" id="MAM02956c" name="TAG-chylomicron pool" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H5O6R3">
+      <species metaid="M_MAM02956c" sboTerm="SBO:0000247" id="M_MAM02956c" name="TAG-chylomicron pool" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H5O6R3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02956c">
+            <rdf:Description rdf:about="#M_MAM02956c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:17855"/>
@@ -131302,10 +131354,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02956l" sboTerm="SBO:0000247" id="MAM02956l" name="TAG-chylomicron pool" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H5O6R3">
+      <species metaid="M_MAM02956l" sboTerm="SBO:0000247" id="M_MAM02956l" name="TAG-chylomicron pool" compartment="l" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H5O6R3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02956l">
+            <rdf:Description rdf:about="#M_MAM02956l">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:17855"/>
@@ -131319,10 +131371,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02959r" sboTerm="SBO:0000247" id="MAM02959r" name="TAG-VLDL pool" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H5O6R3">
+      <species metaid="M_MAM02959r" sboTerm="SBO:0000247" id="M_MAM02959r" name="TAG-VLDL pool" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H5O6R3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02959r">
+            <rdf:Description rdf:about="#M_MAM02959r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/tag_hs"/>
@@ -131337,10 +131389,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00235g" sboTerm="SBO:0000247" id="MAM00235g" name="1,2-diacylglycerol-LD-PC pool" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H6O5R2">
+      <species metaid="M_MAM00235g" sboTerm="SBO:0000247" id="M_MAM00235g" name="1,2-diacylglycerol-LD-PC pool" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H6O5R2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00235g">
+            <rdf:Description rdf:about="#M_MAM00235g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:17815"/>
@@ -131354,10 +131406,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00235n" sboTerm="SBO:0000247" id="MAM00235n" name="1,2-diacylglycerol-LD-PC pool" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H6O5R2">
+      <species metaid="M_MAM00235n" sboTerm="SBO:0000247" id="M_MAM00235n" name="1,2-diacylglycerol-LD-PC pool" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H6O5R2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00235n">
+            <rdf:Description rdf:about="#M_MAM00235n">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:17815"/>
@@ -131371,10 +131423,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00235e" sboTerm="SBO:0000247" id="MAM00235e" name="1,2-diacylglycerol-LD-PC pool" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H6O5R2">
+      <species metaid="M_MAM00235e" sboTerm="SBO:0000247" id="M_MAM00235e" name="1,2-diacylglycerol-LD-PC pool" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H6O5R2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00235e">
+            <rdf:Description rdf:about="#M_MAM00235e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:17815"/>
@@ -131388,10 +131440,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00237n" sboTerm="SBO:0000247" id="MAM00237n" name="1,2-diacylglycerol-LD-PI pool" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H6O5R2">
+      <species metaid="M_MAM00237n" sboTerm="SBO:0000247" id="M_MAM00237n" name="1,2-diacylglycerol-LD-PI pool" compartment="n" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H6O5R2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00237n">
+            <rdf:Description rdf:about="#M_MAM00237n">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:17815"/>
@@ -131405,10 +131457,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01426c" sboTerm="SBO:0000247" id="MAM01426c" name="CDP-diacylglycerol-CL pool" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C14H17N3O15P2R2">
+      <species metaid="M_MAM01426c" sboTerm="SBO:0000247" id="M_MAM01426c" name="CDP-diacylglycerol-CL pool" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C14H17N3O15P2R2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01426c">
+            <rdf:Description rdf:about="#M_MAM01426c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C00269"/>
@@ -131420,10 +131472,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01807c" sboTerm="SBO:0000247" id="MAM01807c" name="fatty acid-chylomicron pool" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="CHO2R">
+      <species metaid="M_MAM01807c" sboTerm="SBO:0000247" id="M_MAM01807c" name="fatty acid-chylomicron pool" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="CHO2R">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01807c">
+            <rdf:Description rdf:about="#M_MAM01807c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/M01807"/>
@@ -131433,10 +131485,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01820c" sboTerm="SBO:0000247" id="MAM01820c" name="fatty acid-VLDL pool" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="CHO2R">
+      <species metaid="M_MAM01820c" sboTerm="SBO:0000247" id="M_MAM01820c" name="fatty acid-VLDL pool" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="CHO2R">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01820c">
+            <rdf:Description rdf:about="#M_MAM01820c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:35366"/>
@@ -131449,10 +131501,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02728m" sboTerm="SBO:0000247" id="MAM02728m" name="phosphatidate-LD-PC pool" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C5H5O8PR2">
+      <species metaid="M_MAM02728m" sboTerm="SBO:0000247" id="M_MAM02728m" name="phosphatidate-LD-PC pool" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C5H5O8PR2">
         <annotation>
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-            <rdf:Description rdf:about="#MAM02728m">
+            <rdf:Description rdf:about="#M_MAM02728m">
               <bqbiol:is>
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@@ -131466,10 +131518,10 @@
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+      <species metaid="M_MAM02730m" sboTerm="SBO:0000247" id="M_MAM02730m" name="phosphatidate-LD-PI pool" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C5H5O8PR2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02730m">
+            <rdf:Description rdf:about="#M_MAM02730m">
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                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:16337"/>
@@ -131483,10 +131535,10 @@
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-      <species metaid="MAM02730r" sboTerm="SBO:0000247" id="MAM02730r" name="phosphatidate-LD-PI pool" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C5H5O8PR2">
+      <species metaid="M_MAM02730r" sboTerm="SBO:0000247" id="M_MAM02730r" name="phosphatidate-LD-PI pool" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C5H5O8PR2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02730r">
+            <rdf:Description rdf:about="#M_MAM02730r">
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                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:16337"/>
@@ -131500,10 +131552,10 @@
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-      <species metaid="MAM02730g" sboTerm="SBO:0000247" id="MAM02730g" name="phosphatidate-LD-PI pool" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C5H5O8PR2">
+      <species metaid="M_MAM02730g" sboTerm="SBO:0000247" id="M_MAM02730g" name="phosphatidate-LD-PI pool" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C5H5O8PR2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02730g">
+            <rdf:Description rdf:about="#M_MAM02730g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:16337"/>
@@ -131517,10 +131569,10 @@
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         </annotation>
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-      <species metaid="MAM02731r" sboTerm="SBO:0000247" id="MAM02731r" name="phosphatidate-LD-PS pool" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C5H5O8PR2">
+      <species metaid="M_MAM02731r" sboTerm="SBO:0000247" id="M_MAM02731r" name="phosphatidate-LD-PS pool" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C5H5O8PR2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02731r">
+            <rdf:Description rdf:about="#M_MAM02731r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:16337"/>
@@ -131534,10 +131586,10 @@
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         </annotation>
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-      <species metaid="MAM02731g" sboTerm="SBO:0000247" id="MAM02731g" name="phosphatidate-LD-PS pool" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C5H5O8PR2">
+      <species metaid="M_MAM02731g" sboTerm="SBO:0000247" id="M_MAM02731g" name="phosphatidate-LD-PS pool" compartment="g" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C5H5O8PR2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02731g">
+            <rdf:Description rdf:about="#M_MAM02731g">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:16337"/>
@@ -131551,10 +131603,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM02838e" sboTerm="SBO:0000247" id="MAM02838e" name="retinyl-ester" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H29O2R">
+      <species metaid="M_MAM02838e" sboTerm="SBO:0000247" id="M_MAM02838e" name="retinyl-ester" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H29O2R">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02838e">
+            <rdf:Description rdf:about="#M_MAM02838e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:63410"/>
@@ -131567,10 +131619,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM00196r" sboTerm="SBO:0000247" id="MAM00196r" name="[protein]" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="X">
+      <species metaid="M_MAM00196r" sboTerm="SBO:0000247" id="M_MAM00196r" name="[protein]" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="X">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00196r">
+            <rdf:Description rdf:about="#M_MAM00196r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:16541"/>
@@ -131584,10 +131636,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM10012c" sboTerm="SBO:0000247" id="MAM10012c" name="cofactor_pool_biomass" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
+      <species metaid="M_MAM10012c" sboTerm="SBO:0000247" id="M_MAM10012c" name="cofactor_pool_biomass" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#meta_MAM10012c">
+            <rdf:Description rdf:about="#meta_M_MAM10012c">
               <bqbiol:is>
                 <rdf:Bag/>
               </bqbiol:is>
@@ -131595,10 +131647,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM10013c" sboTerm="SBO:0000247" id="MAM10013c" name="protein_pool_biomass" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
+      <species metaid="M_MAM10013c" sboTerm="SBO:0000247" id="M_MAM10013c" name="protein_pool_biomass" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#meta_MAM10013c">
+            <rdf:Description rdf:about="#meta_M_MAM10013c">
               <bqbiol:is>
                 <rdf:Bag/>
               </bqbiol:is>
@@ -131606,10 +131658,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM10014c" sboTerm="SBO:0000247" id="MAM10014c" name="lipid_pool_biomass" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
+      <species metaid="M_MAM10014c" sboTerm="SBO:0000247" id="M_MAM10014c" name="lipid_pool_biomass" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#meta_MAM10014c">
+            <rdf:Description rdf:about="#meta_M_MAM10014c">
               <bqbiol:is>
                 <rdf:Bag/>
               </bqbiol:is>
@@ -131617,10 +131669,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM10015c" sboTerm="SBO:0000247" id="MAM10015c" name="metabolite_pool_biomass" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
+      <species metaid="M_MAM10015c" sboTerm="SBO:0000247" id="M_MAM10015c" name="metabolite_pool_biomass" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#meta_MAM10015c">
+            <rdf:Description rdf:about="#meta_M_MAM10015c">
               <bqbiol:is>
                 <rdf:Bag/>
               </bqbiol:is>
@@ -131628,10 +131680,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM10016c" sboTerm="SBO:0000247" id="MAM10016c" name="2,3-epoxy-2,3-dihydro-2-methyl-3-phytyl-1,4-naphthoquinone" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C31H46O3">
+      <species metaid="M_MAM10016c" sboTerm="SBO:0000247" id="M_MAM10016c" name="2,3-epoxy-2,3-dihydro-2-methyl-3-phytyl-1,4-naphthoquinone" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C31H46O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM10016c">
+            <rdf:Description rdf:about="#M_MAM10016c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:15759"/>
@@ -131642,10 +131694,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM10017c" sboTerm="SBO:0000247" id="MAM10017c" name="3-hydroxy-2-methyl-3-phytyl-2,3-dihydronaphthoquinone" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C31H48O3">
+      <species metaid="M_MAM10017c" sboTerm="SBO:0000247" id="M_MAM10017c" name="3-hydroxy-2-methyl-3-phytyl-2,3-dihydronaphthoquinone" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C31H48O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM10017c">
+            <rdf:Description rdf:about="#M_MAM10017c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:18298"/>
@@ -131656,10 +131708,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM10019c" sboTerm="SBO:0000247" id="MAM10019c" name="5alpha-Pregnan-20alpha-ol-3-one" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H34O2">
+      <species metaid="M_MAM10019c" sboTerm="SBO:0000247" id="M_MAM10019c" name="5alpha-Pregnan-20alpha-ol-3-one" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H34O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM10019c">
+            <rdf:Description rdf:about="#M_MAM10019c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C18041"/>
@@ -131669,10 +131721,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM10020c" sboTerm="SBO:0000247" id="MAM10020c" name="17alpha,20alpha-Dihydroxypregn-4-en-3-one" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H32O3">
+      <species metaid="M_MAM10020c" sboTerm="SBO:0000247" id="M_MAM10020c" name="17alpha,20alpha-Dihydroxypregn-4-en-3-one" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H32O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM10020c">
+            <rdf:Description rdf:about="#M_MAM10020c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C04518"/>
@@ -131682,10 +131734,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM10021c" sboTerm="SBO:0000247" id="MAM10021c" name="alpha-muricholic acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H39O5">
+      <species metaid="M_MAM10021c" sboTerm="SBO:0000247" id="M_MAM10021c" name="alpha-muricholic acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H39O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM10021c">
+            <rdf:Description rdf:about="#M_MAM10021c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:134116"/>
@@ -131696,10 +131748,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM10021e" sboTerm="SBO:0000247" id="MAM10021e" name="alpha-muricholic acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H39O5">
+      <species metaid="M_MAM10021e" sboTerm="SBO:0000247" id="M_MAM10021e" name="alpha-muricholic acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H39O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM10021e">
+            <rdf:Description rdf:about="#M_MAM10021e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:134116"/>
@@ -131710,10 +131762,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM10022c" sboTerm="SBO:0000247" id="MAM10022c" name="beta-muricholic acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H39O5">
+      <species metaid="M_MAM10022c" sboTerm="SBO:0000247" id="M_MAM10022c" name="beta-muricholic acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H39O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM10022c">
+            <rdf:Description rdf:about="#M_MAM10022c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:134119"/>
@@ -131724,10 +131776,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM10022e" sboTerm="SBO:0000247" id="MAM10022e" name="beta-muricholic acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H39O5">
+      <species metaid="M_MAM10022e" sboTerm="SBO:0000247" id="M_MAM10022e" name="beta-muricholic acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H39O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM10022e">
+            <rdf:Description rdf:about="#M_MAM10022e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:134119"/>
@@ -131738,10 +131790,10 @@
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       </species>
-      <species metaid="MAM10023c" sboTerm="SBO:0000247" id="MAM10023c" name="dehydrocholic acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H33O5">
+      <species metaid="M_MAM10023c" sboTerm="SBO:0000247" id="M_MAM10023c" name="dehydrocholic acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H33O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM10023c">
+            <rdf:Description rdf:about="#M_MAM10023c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:137881"/>
@@ -131752,10 +131804,10 @@
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         </annotation>
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-      <species metaid="MAM10023e" sboTerm="SBO:0000247" id="MAM10023e" name="dehydrocholic acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H33O5">
+      <species metaid="M_MAM10023e" sboTerm="SBO:0000247" id="M_MAM10023e" name="dehydrocholic acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H33O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM10023e">
+            <rdf:Description rdf:about="#M_MAM10023e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:137881"/>
@@ -131766,10 +131818,10 @@
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-      <species metaid="MAM10024c" sboTerm="SBO:0000247" id="MAM10024c" name="tauro-alpha-muricholic acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C26H44NO7S">
+      <species metaid="M_MAM10024c" sboTerm="SBO:0000247" id="M_MAM10024c" name="tauro-alpha-muricholic acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C26H44NO7S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM10024c">
+            <rdf:Description rdf:about="#M_MAM10024c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:172400"/>
@@ -131780,10 +131832,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM10024e" sboTerm="SBO:0000247" id="MAM10024e" name="tauro-alpha-muricholic acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C26H44NO7S">
+      <species metaid="M_MAM10024e" sboTerm="SBO:0000247" id="M_MAM10024e" name="tauro-alpha-muricholic acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C26H44NO7S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM10024e">
+            <rdf:Description rdf:about="#M_MAM10024e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:172400"/>
@@ -131794,10 +131846,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM10025c" sboTerm="SBO:0000247" id="MAM10025c" name="omega-muricholic acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H39O5">
+      <species metaid="M_MAM10025c" sboTerm="SBO:0000247" id="M_MAM10025c" name="omega-muricholic acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H39O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM10025c">
+            <rdf:Description rdf:about="#M_MAM10025c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:81299"/>
@@ -131808,10 +131860,10 @@
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         </annotation>
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-      <species metaid="MAM10025e" sboTerm="SBO:0000247" id="MAM10025e" name="omega-muricholic acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H39O5">
+      <species metaid="M_MAM10025e" sboTerm="SBO:0000247" id="M_MAM10025e" name="omega-muricholic acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H39O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM10025e">
+            <rdf:Description rdf:about="#M_MAM10025e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:81299"/>
@@ -131822,10 +131874,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM10026c" sboTerm="SBO:0000247" id="MAM10026c" name="taurohyocholic acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C26H44NO7S">
+      <species metaid="M_MAM10026c" sboTerm="SBO:0000247" id="M_MAM10026c" name="taurohyocholic acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C26H44NO7S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM10026c">
+            <rdf:Description rdf:about="#M_MAM10026c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:52022"/>
@@ -131836,10 +131888,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM10026e" sboTerm="SBO:0000247" id="MAM10026e" name="taurohyocholic acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C26H44NO7S">
+      <species metaid="M_MAM10026e" sboTerm="SBO:0000247" id="M_MAM10026e" name="taurohyocholic acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C26H44NO7S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM10026e">
+            <rdf:Description rdf:about="#M_MAM10026e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:52022"/>
@@ -131850,10 +131902,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM10027c" sboTerm="SBO:0000247" id="MAM10027c" name="glycohyocholic acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C26H42NO6">
+      <species metaid="M_MAM10027c" sboTerm="SBO:0000247" id="M_MAM10027c" name="glycohyocholic acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C26H42NO6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM10027c">
+            <rdf:Description rdf:about="#M_MAM10027c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:133177"/>
@@ -131864,10 +131916,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM10027e" sboTerm="SBO:0000247" id="MAM10027e" name="glycohyocholic acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C26H42NO6">
+      <species metaid="M_MAM10027e" sboTerm="SBO:0000247" id="M_MAM10027e" name="glycohyocholic acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C26H42NO6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM10027e">
+            <rdf:Description rdf:about="#M_MAM10027e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:133177"/>
@@ -131878,10 +131930,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM10028c" sboTerm="SBO:0000247" id="MAM10028c" name="glycohyodeoxycholic acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C26H42NO5">
+      <species metaid="M_MAM10028c" sboTerm="SBO:0000247" id="M_MAM10028c" name="glycohyodeoxycholic acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C26H42NO5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM10028c">
+            <rdf:Description rdf:about="#M_MAM10028c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/pubchem.compound/114611"/>
@@ -131891,10 +131943,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM10028e" sboTerm="SBO:0000247" id="MAM10028e" name="glycohyodeoxycholic acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C26H42NO5">
+      <species metaid="M_MAM10028e" sboTerm="SBO:0000247" id="M_MAM10028e" name="glycohyodeoxycholic acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C26H42NO5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM10028e">
+            <rdf:Description rdf:about="#M_MAM10028e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/pubchem.compound/114611"/>
@@ -131904,10 +131956,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM10029c" sboTerm="SBO:0000247" id="MAM10029c" name="glycodehydrocholic acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C26H36NO6">
+      <species metaid="M_MAM10029c" sboTerm="SBO:0000247" id="M_MAM10029c" name="glycodehydrocholic acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C26H36NO6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM10029c">
+            <rdf:Description rdf:about="#M_MAM10029c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/pubchem.compound/13955640"/>
@@ -131917,10 +131969,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM10029e" sboTerm="SBO:0000247" id="MAM10029e" name="glycodehydrocholic acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C26H36NO6">
+      <species metaid="M_MAM10029e" sboTerm="SBO:0000247" id="M_MAM10029e" name="glycodehydrocholic acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C26H36NO6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM10029e">
+            <rdf:Description rdf:about="#M_MAM10029e">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/pubchem.compound/13955640"/>
@@ -131930,10 +131982,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM10030c" sboTerm="SBO:0000247" id="MAM10030c" name="hyocholic acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H39O5">
+      <species metaid="M_MAM10030c" sboTerm="SBO:0000247" id="M_MAM10030c" name="hyocholic acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H39O5">
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+            <rdf:Description rdf:about="#M_MAM10030c">
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@@ -131943,10 +131995,10 @@
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+      <species metaid="M_MAM10030e" sboTerm="SBO:0000247" id="M_MAM10030e" name="hyocholic acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H39O5">
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+            <rdf:Description rdf:about="#M_MAM10030e">
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@@ -131956,10 +132008,10 @@
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+      <species metaid="M_MAM10031c" sboTerm="SBO:0000247" id="M_MAM10031c" name="tauro-omega-muricholic acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C26H44NO7S">
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+            <rdf:Description rdf:about="#M_MAM10031c">
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@@ -131969,10 +132021,10 @@
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+      <species metaid="M_MAM10031e" sboTerm="SBO:0000247" id="M_MAM10031e" name="tauro-omega-muricholic acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C26H44NO7S">
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+            <rdf:Description rdf:about="#M_MAM10031e">
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@@ -131982,10 +132034,10 @@
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+      <species metaid="M_MAM10032c" sboTerm="SBO:0000247" id="M_MAM10032c" name="tauro-beta-muricholic acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C26H44NO7S">
         <annotation>
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+            <rdf:Description rdf:about="#M_MAM10032c">
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@@ -131995,10 +132047,10 @@
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+      <species metaid="M_MAM10032e" sboTerm="SBO:0000247" id="M_MAM10032e" name="tauro-beta-muricholic acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C26H44NO7S">
         <annotation>
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+            <rdf:Description rdf:about="#M_MAM10032e">
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@@ -132008,10 +132060,10 @@
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+      <species metaid="M_MAM10033c" sboTerm="SBO:0000247" id="M_MAM10033c" name="murideoxycholic acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H39O4">
         <annotation>
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+            <rdf:Description rdf:about="#M_MAM10033c">
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@@ -132021,10 +132073,10 @@
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+      <species metaid="M_MAM10033e" sboTerm="SBO:0000247" id="M_MAM10033e" name="murideoxycholic acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C24H39O4">
         <annotation>
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+            <rdf:Description rdf:about="#M_MAM10033e">
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@@ -132034,10 +132086,10 @@
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+      <species metaid="M_MAM10034c" sboTerm="SBO:0000247" id="M_MAM10034c" name="taurodehydrocholic acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C26H38NO7S">
         <annotation>
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-            <rdf:Description rdf:about="#MAM10034c">
+            <rdf:Description rdf:about="#M_MAM10034c">
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@@ -132047,10 +132099,10 @@
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+      <species metaid="M_MAM10034e" sboTerm="SBO:0000247" id="M_MAM10034e" name="taurodehydrocholic acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C26H38NO7S">
         <annotation>
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+            <rdf:Description rdf:about="#M_MAM10034e">
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@@ -132060,10 +132112,10 @@
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+      <species metaid="M_MAM10035c" sboTerm="SBO:0000247" id="M_MAM10035c" name="alpha-muricholoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C45H70N7O20P3S">
         <annotation>
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-            <rdf:Description rdf:about="#MAM10035c">
+            <rdf:Description rdf:about="#M_MAM10035c">
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@@ -132073,10 +132125,10 @@
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+      <species metaid="M_MAM10036c" sboTerm="SBO:0000247" id="M_MAM10036c" name="beta-muricholoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C45H70N7O20P3S">
         <annotation>
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-            <rdf:Description rdf:about="#MAM10036c">
+            <rdf:Description rdf:about="#M_MAM10036c">
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@@ -132086,10 +132138,10 @@
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+      <species metaid="M_MAM10037c" sboTerm="SBO:0000247" id="M_MAM10037c" name="omega-muricholoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C45H70N7O20P3S">
         <annotation>
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-            <rdf:Description rdf:about="#MAM10037c">
+            <rdf:Description rdf:about="#M_MAM10037c">
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@@ -132099,10 +132151,10 @@
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-      <species metaid="MAM10038c" sboTerm="SBO:0000247" id="MAM10038c" name="hyocholoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C45H70N7O20P3S">
+      <species metaid="M_MAM10038c" sboTerm="SBO:0000247" id="M_MAM10038c" name="hyocholoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C45H70N7O20P3S">
         <annotation>
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-            <rdf:Description rdf:about="#meta_MAM10038c">
+            <rdf:Description rdf:about="#meta_M_MAM10038c">
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@@ -132110,10 +132162,10 @@
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-      <species metaid="MAM10039c" sboTerm="SBO:0000247" id="MAM10039c" name="dehydrocholoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C45H64N7O20P3S">
+      <species metaid="M_MAM10039c" sboTerm="SBO:0000247" id="M_MAM10039c" name="dehydrocholoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C45H64N7O20P3S">
         <annotation>
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-            <rdf:Description rdf:about="#meta_MAM10039c">
+            <rdf:Description rdf:about="#meta_M_MAM10039c">
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@@ -132121,10 +132173,10 @@
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-      <species metaid="MAM10040c" sboTerm="SBO:0000247" id="MAM10040c" name="hyodeoxycholoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C45H70N7O19P3S">
+      <species metaid="M_MAM10040c" sboTerm="SBO:0000247" id="M_MAM10040c" name="hyodeoxycholoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C45H70N7O19P3S">
         <annotation>
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-            <rdf:Description rdf:about="#meta_MAM10040c">
+            <rdf:Description rdf:about="#meta_M_MAM10040c">
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@@ -132132,10 +132184,10 @@
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+      <species metaid="M_MAM10041c" sboTerm="SBO:0000247" id="M_MAM10041c" name="tauro-hyodeoxycholic acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C26H44NO6S">
         <annotation>
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-            <rdf:Description rdf:about="#MAM10041c">
+            <rdf:Description rdf:about="#M_MAM10041c">
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@@ -132145,10 +132197,10 @@
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+      <species metaid="M_MAM10041e" sboTerm="SBO:0000247" id="M_MAM10041e" name="tauro-hyodeoxycholic acid" compartment="e" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C26H44NO6S">
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                   <rdf:li rdf:resource="https://identifiers.org/pubchem.compound/119046"/>
@@ -132158,10 +132210,10 @@
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       </species>
-      <species metaid="MAM10042c" sboTerm="SBO:0000247" id="MAM10042c" name="ursodeoxycholoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C45H70N7O19P3S">
+      <species metaid="M_MAM10042c" sboTerm="SBO:0000247" id="M_MAM10042c" name="ursodeoxycholoyl-CoA" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C45H70N7O19P3S">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM10042c">
+            <rdf:Description rdf:about="#M_MAM10042c">
               <bqbiol:is>
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                   <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C17689"/>
@@ -132171,10 +132223,10 @@
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-      <species metaid="MAM20003c" sboTerm="SBO:0000247" id="MAM20003c" name="L-Allothreonine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H9NO3">
+      <species metaid="M_MAM20003c" sboTerm="SBO:0000247" id="M_MAM20003c" name="L-Allothreonine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H9NO3">
         <annotation>
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-            <rdf:Description rdf:about="#MAM20003c">
+            <rdf:Description rdf:about="#M_MAM20003c">
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                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:28718"/>
@@ -132187,10 +132239,10 @@
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-      <species metaid="MAM01104x" sboTerm="SBO:0000247" id="MAM01104x" name="5-hydroxyisourate" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H4N4O4">
+      <species metaid="M_MAM01104x" sboTerm="SBO:0000247" id="M_MAM01104x" name="5-hydroxyisourate" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H4N4O4">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01104x">
+            <rdf:Description rdf:about="#M_MAM01104x">
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@@ -132203,10 +132255,10 @@
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-      <species metaid="MAM10018x" sboTerm="SBO:0000247" id="MAM10018x" name="5-Hydroxy-2-oxo-4-ureido-2,5-dihydro-1H-imidazole-5-carboxylate" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C5H5N4O5">
+      <species metaid="M_MAM10018x" sboTerm="SBO:0000247" id="M_MAM10018x" name="5-Hydroxy-2-oxo-4-ureido-2,5-dihydro-1H-imidazole-5-carboxylate" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C5H5N4O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM10018x">
+            <rdf:Description rdf:about="#M_MAM10018x">
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                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:58639"/>
@@ -132219,10 +132271,10 @@
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-      <species metaid="MAM10018c" sboTerm="SBO:0000247" id="MAM10018c" name="5-Hydroxy-2-oxo-4-ureido-2,5-dihydro-1H-imidazole-5-carboxylate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C5H5N4O5">
+      <species metaid="M_MAM10018c" sboTerm="SBO:0000247" id="M_MAM10018c" name="5-Hydroxy-2-oxo-4-ureido-2,5-dihydro-1H-imidazole-5-carboxylate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C5H5N4O5">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM10018c">
+            <rdf:Description rdf:about="#M_MAM10018c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:58639"/>
@@ -132233,10 +132285,10 @@
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-      <species metaid="MAM20005x" sboTerm="SBO:0000247" id="MAM20005x" name="1,3,7-Trimethyluric acid" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H10N4O3">
+      <species metaid="M_MAM20005x" sboTerm="SBO:0000247" id="M_MAM20005x" name="1,3,7-Trimethyluric acid" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H10N4O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM20005x">
+            <rdf:Description rdf:about="#M_MAM20005x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:691622"/>
@@ -132249,10 +132301,10 @@
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         </annotation>
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-      <species metaid="MAM20006x" sboTerm="SBO:0000247" id="MAM20006x" name="3,6,8-Trimethylallantoin" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H12N4O3">
+      <species metaid="M_MAM20006x" sboTerm="SBO:0000247" id="M_MAM20006x" name="3,6,8-Trimethylallantoin" compartment="x" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H12N4O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM20006x">
+            <rdf:Description rdf:about="#M_MAM20006x">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:80471"/>
@@ -132265,10 +132317,10 @@
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         </annotation>
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-      <species metaid="MAM20010c" sboTerm="SBO:0000247" id="MAM20010c" name="pseudouridine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H12N2O6">
+      <species metaid="M_MAM20010c" sboTerm="SBO:0000247" id="M_MAM20010c" name="pseudouridine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H12N2O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM20010c">
+            <rdf:Description rdf:about="#M_MAM20010c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:17802"/>
@@ -132282,10 +132334,10 @@
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         </annotation>
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-      <species metaid="MAM02807c" sboTerm="SBO:0000247" id="MAM02807c" name="pseudouridine-5-phosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C9H11N2O9P">
+      <species metaid="M_MAM02807c" sboTerm="SBO:0000247" id="M_MAM02807c" name="pseudouridine-5-phosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C9H11N2O9P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02807c">
+            <rdf:Description rdf:about="#M_MAM02807c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:18116"/>
@@ -132298,10 +132350,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM20027c" sboTerm="SBO:0000247" id="MAM20027c" name="L-arginine-phosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H14N4O5P">
+      <species metaid="M_MAM20027c" sboTerm="SBO:0000247" id="M_MAM20027c" name="L-arginine-phosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H14N4O5P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM20027c">
+            <rdf:Description rdf:about="#M_MAM20027c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:58477"/>
@@ -132314,10 +132366,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM20028r" sboTerm="SBO:0000247" id="MAM20028r" name="2-2-N-linked-Glycan" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C54H88N6O37">
+      <species metaid="M_MAM20028r" sboTerm="SBO:0000247" id="M_MAM20028r" name="2-2-N-linked-Glycan" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C54H88N6O37">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM20028r">
+            <rdf:Description rdf:about="#M_MAM20028r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:60651"/>
@@ -132329,10 +132381,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM20029r" sboTerm="SBO:0000247" id="MAM20029r" name="N4-N-ACETYL-BETA-D-GLUCOSAMINYL-F" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C60H98N6O41">
+      <species metaid="M_MAM20029r" sboTerm="SBO:0000247" id="M_MAM20029r" name="N4-N-ACETYL-BETA-D-GLUCOSAMINYL-F" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C60H98N6O41">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM20029r">
+            <rdf:Description rdf:about="#M_MAM20029r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:137182"/>
@@ -132344,10 +132396,10 @@
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         </annotation>
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-      <species metaid="MAM01948r" sboTerm="SBO:0000247" id="MAM01948r" name="GDP" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C10H12N5O11P2">
+      <species metaid="M_MAM01948r" sboTerm="SBO:0000247" id="M_MAM01948r" name="GDP" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C10H12N5O11P2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01948r">
+            <rdf:Description rdf:about="#M_MAM01948r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:17552"/>
@@ -132359,10 +132411,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM01950r" sboTerm="SBO:0000247" id="MAM01950r" name="GDP-L-fucose" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C16H23N5O15P2">
+      <species metaid="M_MAM01950r" sboTerm="SBO:0000247" id="M_MAM01950r" name="GDP-L-fucose" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C16H23N5O15P2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01950r">
+            <rdf:Description rdf:about="#M_MAM01950r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:17009"/>
@@ -132374,10 +132426,10 @@
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         </annotation>
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-      <species metaid="MAM20030c" sboTerm="SBO:0000247" id="MAM20030c" name="ecdysone" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H44O6">
+      <species metaid="M_MAM20030c" sboTerm="SBO:0000247" id="M_MAM20030c" name="ecdysone" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H44O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM20030c">
+            <rdf:Description rdf:about="#M_MAM20030c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:16688"/>
@@ -132391,10 +132443,10 @@
           </rdf:RDF>
         </annotation>
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-      <species metaid="MAM20031c" sboTerm="SBO:0000247" id="MAM20031c" name="3-dehydroecdysone" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H42O6">
+      <species metaid="M_MAM20031c" sboTerm="SBO:0000247" id="M_MAM20031c" name="3-dehydroecdysone" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H42O6">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM20031c">
+            <rdf:Description rdf:about="#M_MAM20031c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:17058"/>
@@ -132408,10 +132460,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM20032c" sboTerm="SBO:0000247" id="MAM20032c" name="20-hydroxyecdysone" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H44O7">
+      <species metaid="M_MAM20032c" sboTerm="SBO:0000247" id="M_MAM20032c" name="20-hydroxyecdysone" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H44O7">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM20032c">
+            <rdf:Description rdf:about="#M_MAM20032c">
               <bqbiol:is>
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                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:16587"/>
@@ -132424,10 +132476,10 @@
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+      <species metaid="M_MAM20033c" sboTerm="SBO:0000247" id="M_MAM20033c" name="2,22,25-trideoxyecdysone" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H44O3">
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+            <rdf:Description rdf:about="#M_MAM20033c">
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@@ -132440,10 +132492,10 @@
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+      <species metaid="M_MAM20034c" sboTerm="SBO:0000247" id="M_MAM20034c" name="2,22-dideoxyecdysone" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H44O4">
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-            <rdf:Description rdf:about="#MAM20034c">
+            <rdf:Description rdf:about="#M_MAM20034c">
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@@ -132456,10 +132508,10 @@
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+      <species metaid="M_MAM20035c" sboTerm="SBO:0000247" id="M_MAM20035c" name="2,22-dideoxyecdysone" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H44O4">
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-            <rdf:Description rdf:about="#MAM20035c">
+            <rdf:Description rdf:about="#M_MAM20035c">
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@@ -132472,10 +132524,10 @@
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+      <species metaid="M_MAM20036c" sboTerm="SBO:0000247" id="M_MAM20036c" name="2-deoxyecdysone" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H44O5">
         <annotation>
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-            <rdf:Description rdf:about="#MAM20036c">
+            <rdf:Description rdf:about="#M_MAM20036c">
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@@ -132489,10 +132541,10 @@
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+      <species metaid="M_MAM20037c" sboTerm="SBO:0000247" id="M_MAM20037c" name="3-dehydro-2,22,25-deoxyecdysone" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H42O3">
         <annotation>
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-            <rdf:Description rdf:about="#MAM20037c">
+            <rdf:Description rdf:about="#M_MAM20037c">
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@@ -132505,10 +132557,10 @@
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+      <species metaid="M_MAM20038c" sboTerm="SBO:0000247" id="M_MAM20038c" name="3-dehydro-2,22-dideoxyecdysone" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H42O4">
         <annotation>
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-            <rdf:Description rdf:about="#MAM20038c">
+            <rdf:Description rdf:about="#M_MAM20038c">
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                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:80533"/>
@@ -132521,10 +132573,10 @@
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-      <species metaid="MAM20039c" sboTerm="SBO:0000247" id="MAM20039c" name="3-dehydro-2-deoxyecdysone" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H42O5">
+      <species metaid="M_MAM20039c" sboTerm="SBO:0000247" id="M_MAM20039c" name="3-dehydro-2-deoxyecdysone" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H42O5">
         <annotation>
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-            <rdf:Description rdf:about="#MAM20039c">
+            <rdf:Description rdf:about="#M_MAM20039c">
               <bqbiol:is>
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@@ -132537,10 +132589,10 @@
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+      <species metaid="M_MAM20040c" sboTerm="SBO:0000247" id="M_MAM20040c" name="3-dehydroecdysone" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H42O6">
         <annotation>
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-            <rdf:Description rdf:about="#MAM20040c">
+            <rdf:Description rdf:about="#M_MAM20040c">
               <bqbiol:is>
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                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:17058"/>
@@ -132554,10 +132606,10 @@
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+      <species metaid="M_MAM20041c" sboTerm="SBO:0000247" id="M_MAM20041c" name="20,26-dihydroxyecdysone" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H44O8">
         <annotation>
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-            <rdf:Description rdf:about="#MAM20041c">
+            <rdf:Description rdf:about="#M_MAM20041c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:19793"/>
@@ -132571,10 +132623,10 @@
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-      <species metaid="MAM20042c" sboTerm="SBO:0000247" id="MAM20042c" name="trans-trans-farnesyl-phosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C15H25O4P">
+      <species metaid="M_MAM20042c" sboTerm="SBO:0000247" id="M_MAM20042c" name="trans-trans-farnesyl-phosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C15H25O4P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM20042c">
+            <rdf:Description rdf:about="#M_MAM20042c">
               <bqbiol:is>
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                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:88226"/>
@@ -132587,10 +132639,10 @@
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-      <species metaid="MAM20043c" sboTerm="SBO:0000247" id="MAM20043c" name="2-trans-S-6-trans-farnesol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C15H26O">
+      <species metaid="M_MAM20043c" sboTerm="SBO:0000247" id="M_MAM20043c" name="2-trans-S-6-trans-farnesol" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C15H26O">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM20043c">
+            <rdf:Description rdf:about="#M_MAM20043c">
               <bqbiol:is>
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                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:16619"/>
@@ -132603,10 +132655,10 @@
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-      <species metaid="MAM20044c" sboTerm="SBO:0000247" id="MAM20044c" name="2-trans-6-trans-farnesal" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C15H24O">
+      <species metaid="M_MAM20044c" sboTerm="SBO:0000247" id="M_MAM20044c" name="2-trans-6-trans-farnesal" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C15H24O">
         <annotation>
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-            <rdf:Description rdf:about="#MAM20044c">
+            <rdf:Description rdf:about="#M_MAM20044c">
               <bqbiol:is>
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                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:15894"/>
@@ -132619,10 +132671,10 @@
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-      <species metaid="MAM20045c" sboTerm="SBO:0000247" id="MAM20045c" name="alpha-D-glucose 6-phosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H11O9P">
+      <species metaid="M_MAM20045c" sboTerm="SBO:0000247" id="M_MAM20045c" name="alpha-D-glucose 6-phosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H11O9P">
         <annotation>
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-            <rdf:Description rdf:about="#MAM20045c">
+            <rdf:Description rdf:about="#M_MAM20045c">
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@@ -132635,10 +132687,10 @@
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-      <species metaid="MAM20046c" sboTerm="SBO:0000247" id="MAM20046c" name="alpha-alpha-trehalose-6-phosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C12H21O14P">
+      <species metaid="M_MAM20046c" sboTerm="SBO:0000247" id="M_MAM20046c" name="alpha-alpha-trehalose-6-phosphate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C12H21O14P">
         <annotation>
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-            <rdf:Description rdf:about="#MAM20046c">
+            <rdf:Description rdf:about="#M_MAM20046c">
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                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:18283"/>
@@ -132651,10 +132703,10 @@
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-      <species metaid="MAM20047c" sboTerm="SBO:0000247" id="MAM20047c" name="secologanin" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C17H24O10">
+      <species metaid="M_MAM20047c" sboTerm="SBO:0000247" id="M_MAM20047c" name="secologanin" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C17H24O10">
         <annotation>
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-            <rdf:Description rdf:about="#MAM20047c">
+            <rdf:Description rdf:about="#M_MAM20047c">
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                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:18002"/>
@@ -132667,10 +132719,10 @@
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-      <species metaid="MAM20048c" sboTerm="SBO:0000247" id="MAM20048c" name="3-alphaS-strictosidine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C27H35N2O9">
+      <species metaid="M_MAM20048c" sboTerm="SBO:0000247" id="M_MAM20048c" name="3-alphaS-strictosidine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C27H35N2O9">
         <annotation>
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-            <rdf:Description rdf:about="#MAM20048c">
+            <rdf:Description rdf:about="#M_MAM20048c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:17559"/>
@@ -132683,10 +132735,10 @@
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-      <species metaid="MAM20049c" sboTerm="SBO:0000247" id="MAM20049c" name="pyrimidodiazepine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H11N5O2">
+      <species metaid="M_MAM20049c" sboTerm="SBO:0000247" id="M_MAM20049c" name="pyrimidodiazepine" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H11N5O2">
         <annotation>
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-            <rdf:Description rdf:about="#MAM20049c">
+            <rdf:Description rdf:about="#M_MAM20049c">
               <bqbiol:is>
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                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:27114"/>
@@ -132699,10 +132751,10 @@
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         </annotation>
       </species>
-      <species metaid="MAM20050c" sboTerm="SBO:0000247" id="MAM20050c" name="Juvenile hormone III" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C16H26O3">
+      <species metaid="M_MAM20050c" sboTerm="SBO:0000247" id="M_MAM20050c" name="Juvenile hormone III" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C16H26O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM20050c">
+            <rdf:Description rdf:about="#M_MAM20050c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:27493"/>
@@ -132715,10 +132767,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM20051c" sboTerm="SBO:0000247" id="MAM20051c" name="Juvenile hormone III acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C15H23O3">
+      <species metaid="M_MAM20051c" sboTerm="SBO:0000247" id="M_MAM20051c" name="Juvenile hormone III acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C15H23O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM20051c">
+            <rdf:Description rdf:about="#M_MAM20051c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:83274"/>
@@ -132731,10 +132783,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM20052c" sboTerm="SBO:0000247" id="MAM20052c" name="farnesoic acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C15H24O2">
+      <species metaid="M_MAM20052c" sboTerm="SBO:0000247" id="M_MAM20052c" name="farnesoic acid" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C15H24O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM20052c">
+            <rdf:Description rdf:about="#M_MAM20052c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:83276"/>
@@ -132747,10 +132799,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM20053c" sboTerm="SBO:0000247" id="MAM20053c" name="methyl farnesoate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C16H26O2">
+      <species metaid="M_MAM20053c" sboTerm="SBO:0000247" id="M_MAM20053c" name="methyl farnesoate" compartment="c" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C16H26O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM20053c">
+            <rdf:Description rdf:about="#M_MAM20053c">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:80535"/>
@@ -132763,10 +132815,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00809r" sboTerm="SBO:0000247" id="MAM00809r" name="3-keto-4-methylzymosterol" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C28H44O">
+      <species metaid="M_MAM00809r" sboTerm="SBO:0000247" id="M_MAM00809r" name="3-keto-4-methylzymosterol" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C28H44O">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00809r">
+            <rdf:Description rdf:about="#M_MAM00809r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/4mzym_int2"/>
@@ -132784,10 +132836,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01066r" sboTerm="SBO:0000247" id="MAM01066r" name="5alpha-cholesta-7,24-dien-3beta-ol" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H44O">
+      <species metaid="M_MAM01066r" sboTerm="SBO:0000247" id="M_MAM01066r" name="5alpha-cholesta-7,24-dien-3beta-ol" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H44O">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01066r">
+            <rdf:Description rdf:about="#M_MAM01066r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/chlstol"/>
@@ -132803,10 +132855,32 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM02932r" sboTerm="SBO:0000247" id="MAM02932r" name="squalene 2,3-oxide" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C30H50O">
+      <species metaid="M_MAM01189r" sboTerm="SBO:0000247" id="M_MAM01189r" name="7-dehydrodesmosterol" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H42O">
+        <annotation>
+          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+            <rdf:Description rdf:about="#M_MAM01189r">
+              <bqbiol:is>
+                <rdf:Bag>
+                  <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/ddsmsterol"/>
+                  <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:27910"/>
+                  <rdf:li rdf:resource="https://identifiers.org/hmdb/HMDB03896"/>
+                  <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C05107"/>
+                  <rdf:li rdf:resource="https://identifiers.org/lipidmaps/LMST01010121"/>
+                  <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM162832"/>
+                  <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM941"/>
+                  <rdf:li rdf:resource="https://identifiers.org/pubchem.compound/440558"/>
+                  <rdf:li rdf:resource="https://identifiers.org/vmhmetabolite/ddsmsterol"/>
+                  <rdf:li rdf:resource="https://identifiers.org/inchi/InChI=1S/C27H42O/c1-18(2)7-6-8-19(3)23-11-12-24-22-10-9-20-17-21(28)13-15-26(20,4)25(22)14-16-27(23,24)5/h7,9-10,19,21,23-25,28H,6,8,11-17H2,1-5H3/t19-,21+,23-,24+,25+,26+,27-/m1/s1"/>
+                </rdf:Bag>
+              </bqbiol:is>
+            </rdf:Description>
+          </rdf:RDF>
+        </annotation>
+      </species>
+      <species metaid="M_MAM02932r" sboTerm="SBO:0000247" id="M_MAM02932r" name="squalene 2,3-oxide" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C30H50O">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM02932r">
+            <rdf:Description rdf:about="#M_MAM02932r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/Ssq23epx"/>
@@ -132822,10 +132896,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00356r" sboTerm="SBO:0000247" id="MAM00356r" name="13-hydroxy-alpha-tocopherol" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C29H50O3">
+      <species metaid="M_MAM00356r" sboTerm="SBO:0000247" id="M_MAM00356r" name="13-hydroxy-alpha-tocopherol" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C29H50O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00356r">
+            <rdf:Description rdf:about="#M_MAM00356r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM9688"/>
@@ -132837,10 +132911,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM00360r" sboTerm="SBO:0000247" id="MAM00360r" name="13-hydroxy-gamma-tocopherol" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C28H48O3">
+      <species metaid="M_MAM00360r" sboTerm="SBO:0000247" id="M_MAM00360r" name="13-hydroxy-gamma-tocopherol" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C28H48O3">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM00360r">
+            <rdf:Description rdf:about="#M_MAM00360r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM163114"/>
@@ -132852,10 +132926,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01023r" sboTerm="SBO:0000247" id="MAM01023r" name="4-OH-9-cis-retinal" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H28O2">
+      <species metaid="M_MAM01023r" sboTerm="SBO:0000247" id="M_MAM01023r" name="4-OH-9-cis-retinal" compartment="r" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H28O2">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01023r">
+            <rdf:Description rdf:about="#M_MAM01023r">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM164317"/>
@@ -132866,10 +132940,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01598m" sboTerm="SBO:0000247" id="MAM01598m" name="cob(I)alamin" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C62H88CoN13O14P">
+      <species metaid="M_MAM01598m" sboTerm="SBO:0000247" id="M_MAM01598m" name="cob(I)alamin" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C62H88CoN13O14P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01598m">
+            <rdf:Description rdf:about="#M_MAM01598m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/cbl1"/>
@@ -132883,10 +132957,10 @@
           </rdf:RDF>
         </annotation>
       </species>
-      <species metaid="MAM01599m" sboTerm="SBO:0000247" id="MAM01599m" name="cob(II)alamin" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C62H88CoN13O14P">
+      <species metaid="M_MAM01599m" sboTerm="SBO:0000247" id="M_MAM01599m" name="cob(II)alamin" compartment="m" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C62H88CoN13O14P">
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAM01599m">
+            <rdf:Description rdf:about="#M_MAM01599m">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/cbl2"/>
@@ -132907,7 +132981,7 @@
       <parameter id="FB3N1000" value="1000" constant="true"/>
     </listOfParameters>
     <listOfReactions>
-      <reaction metaid="MAR03905" sboTerm="SBO:0000176" id="MAR03905" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03905" sboTerm="SBO:0000176" id="R_MAR03905" name="ethanol:NAD+ oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -132916,7 +132990,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03905">
+            <rdf:Description rdf:about="#R_MAR03905">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.1"/>
@@ -132933,13 +133007,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01796c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01796c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01249c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01249c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -132948,7 +133022,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03907" sboTerm="SBO:0000176" id="MAR03907" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03907" sboTerm="SBO:0000176" id="R_MAR03907" name="Ethanol:NADP+ oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -132956,7 +133030,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03907">
+            <rdf:Description rdf:about="#R_MAR03907">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.2"/>
@@ -132970,19 +133044,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01796c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01796c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01249c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01249c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG2767"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04097" sboTerm="SBO:0000176" id="MAR04097" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04097" sboTerm="SBO:0000176" id="R_MAR04097" name="Acetate:CoA ligase (AMP-forming)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -132991,7 +133065,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04097">
+            <rdf:Description rdf:about="#R_MAR04097">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.1"/>
@@ -133007,20 +133081,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01252c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01252c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01334c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="AcCoAS"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04099" sboTerm="SBO:0000176" id="MAR04099" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04099" sboTerm="SBO:0000176" id="R_MAR04099" name="Acetate:CoA ligase (AMP-forming)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -133029,7 +133103,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04099">
+            <rdf:Description rdf:about="#R_MAR04099">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.1"/>
@@ -133045,20 +133119,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01252m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01252m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01334m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG6432"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04108" sboTerm="SBO:0000176" id="MAR04108" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04108" sboTerm="SBO:0000176" id="R_MAR04108" name="acetyl adenylate:CoA acetyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -133067,7 +133141,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04108">
+            <rdf:Description rdf:about="#R_MAR04108">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.1"/>
@@ -133080,19 +133154,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01257c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01257c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01334c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="AcCoAS"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04133" sboTerm="SBO:0000176" id="MAR04133" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04133" sboTerm="SBO:0000176" id="R_MAR04133" name="ATP:acetate adenylyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -133101,7 +133175,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04133">
+            <rdf:Description rdf:about="#R_MAR04133">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.1"/>
@@ -133114,19 +133188,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01252c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01252c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01257c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01257c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="AcCoAS"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04137" sboTerm="SBO:0000176" id="MAR04137" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04137" sboTerm="SBO:0000176" id="R_MAR04137" name="pyruvate:NAD+ 2-oxidoreductase (CoA-acetylating)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -133135,7 +133209,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04137">
+            <rdf:Description rdf:about="#R_MAR04137">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.2.4.1"/>
@@ -133154,14 +133228,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02819m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02819m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01596m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01596m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:and>
@@ -133172,7 +133246,7 @@
           </fbc:and>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04281" sboTerm="SBO:0000176" id="MAR04281" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04281" sboTerm="SBO:0000176" id="R_MAR04281" name="(S)-Lactate:NAD+ oxidoreductase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -133181,7 +133255,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04281">
+            <rdf:Description rdf:about="#R_MAR04281">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.27"/>
@@ -133194,13 +133268,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02819x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02819x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02403x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02403x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -133209,7 +133283,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04388" sboTerm="SBO:0000176" id="MAR04388" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04388" sboTerm="SBO:0000176" id="R_MAR04388" name="(S)-Lactate:NAD+ oxidoreductase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -133218,7 +133292,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04388">
+            <rdf:Description rdf:about="#R_MAR04388">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.27"/>
@@ -133232,13 +133306,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02819c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02819c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02403c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02403c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -133247,7 +133321,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04283" sboTerm="SBO:0000176" id="MAR04283" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04283" sboTerm="SBO:0000176" id="R_MAR04283" name="Acetaldehyde:NADP+ oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -133256,7 +133330,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04283">
+            <rdf:Description rdf:about="#R_MAR04283">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.2.1.5"/>
@@ -133271,14 +133345,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01249c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01249c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01252c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01252c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -133286,7 +133360,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08357" sboTerm="SBO:0000176" id="MAR08357" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08357" sboTerm="SBO:0000176" id="R_MAR08357" name="Acetaldehyde:NAD+ oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -133294,7 +133368,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08357">
+            <rdf:Description rdf:about="#R_MAR08357">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.2.1.3"/>
@@ -133311,14 +133385,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01249m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01249m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01252m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01252m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -133326,7 +133400,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04379" sboTerm="SBO:0000176" id="MAR04379" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04379" sboTerm="SBO:0000176" id="R_MAR04379" name="ATP:D-fructose-6-phosphate 1-phosphotransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -133335,7 +133409,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04379">
+            <rdf:Description rdf:about="#R_MAR04379">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.1.11"/>
@@ -133350,19 +133424,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01845c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01845c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01841c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01841c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Pfk"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04301" sboTerm="SBO:0000176" id="MAR04301" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04301" sboTerm="SBO:0000176" id="R_MAR04301" name="UTP:D-fructose-6-phosphate 1-phosphotransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -133371,7 +133445,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04301">
+            <rdf:Description rdf:about="#R_MAR04301">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.1.11"/>
@@ -133385,13 +133459,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01845c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03130c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01845c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03130c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01841c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01841c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -133400,7 +133474,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04355" sboTerm="SBO:0000176" id="MAR04355" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04355" sboTerm="SBO:0000176" id="R_MAR04355" name="sedoheptulose 1,7-bisphosphate D-glyceraldehyde-3-phosphate-lyase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -133409,7 +133483,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04355">
+            <rdf:Description rdf:about="#R_MAR04355">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.1.2.13"/>
@@ -133423,17 +133497,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01690c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01785c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01690c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01785c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02883c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02883c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Ald1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04358" sboTerm="SBO:0000176" id="MAR04358" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04358" sboTerm="SBO:0000176" id="R_MAR04358" name="ATP:pyruvate 2-O-phosphotransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -133442,7 +133516,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04358">
+            <rdf:Description rdf:about="#R_MAR04358">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.1.40"/>
@@ -133458,13 +133532,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02696c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02696c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02819c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02819c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -133473,7 +133547,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04363" sboTerm="SBO:0000176" id="MAR04363" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04363" sboTerm="SBO:0000176" id="R_MAR04363" name="2-phospho-D-glycerate hydro-lyase (phosphoenolpyruvate-forming)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -133482,7 +133556,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04363">
+            <rdf:Description rdf:about="#R_MAR04363">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.11"/>
@@ -133496,17 +133570,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00674c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00674c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02696c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02696c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Eno"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04365" sboTerm="SBO:0000176" id="MAR04365" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04365" sboTerm="SBO:0000176" id="R_MAR04365" name="D-phosphoglycerate 2,3-phosphomutase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -133515,7 +133589,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04365">
+            <rdf:Description rdf:about="#R_MAR04365">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/5.4.2.11"/>
@@ -133529,10 +133603,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00674c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00674c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00913c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00913c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -133541,7 +133615,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04368" sboTerm="SBO:0000176" id="MAR04368" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04368" sboTerm="SBO:0000176" id="R_MAR04368" name="ATP:3-phospho-D-glycerate 1-phosphotransferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -133550,7 +133624,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04368">
+            <rdf:Description rdf:about="#R_MAR04368">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.2.3"/>
@@ -133564,12 +133638,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00247c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00247c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00913c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00913c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -133580,7 +133654,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04370" sboTerm="SBO:0000176" id="MAR04370" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04370" sboTerm="SBO:0000176" id="R_MAR04370" name="3-Phospho-D-glyceroyl phosphate phosphohydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -133588,7 +133662,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04370">
+            <rdf:Description rdf:about="#R_MAR04370">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.6.1.7"/>
@@ -133602,13 +133676,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00247c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00247c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00913c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00913c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -133619,7 +133693,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04371" sboTerm="SBO:0000176" id="MAR04371" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04371" sboTerm="SBO:0000176" id="R_MAR04371" name="3-phospho-D-glycerate 1,2-phosphomutase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -133627,7 +133701,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04371">
+            <rdf:Description rdf:about="#R_MAR04371">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/5.4.2.1"/>
@@ -133641,11 +133715,11 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00247c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00247c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00569c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00569c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -133654,7 +133728,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04372" sboTerm="SBO:0000176" id="MAR04372" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04372" sboTerm="SBO:0000176" id="R_MAR04372" name="2,3-bisphospho-D-glycerate 2-phosphohydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -133662,7 +133736,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04372">
+            <rdf:Description rdf:about="#R_MAR04372">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.3.13"/>
@@ -133675,18 +133749,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00569c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00569c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00913c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00913c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG7059"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04373" sboTerm="SBO:0000176" id="MAR04373" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04373" sboTerm="SBO:0000176" id="R_MAR04373" name="D-glyceraldehyde-3-phosphate:NAD+ oxidoreductase (phosphorylating)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -133695,7 +133769,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04373">
+            <rdf:Description rdf:about="#R_MAR04373">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.2.1.12"/>
@@ -133709,14 +133783,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00247c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00247c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01939c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01939c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -133726,7 +133800,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04375" sboTerm="SBO:0000176" id="MAR04375" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04375" sboTerm="SBO:0000176" id="R_MAR04375" name="D-fructose-1,6-bisphosphate D-glyceraldehyde-3-phosphate-lyase (glycerone-phosphate-forming)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -133735,7 +133809,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04375">
+            <rdf:Description rdf:about="#R_MAR04375">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.1.2.13"/>
@@ -133749,17 +133823,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01690c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01939c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01690c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01939c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01841c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01841c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Ald1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04377" sboTerm="SBO:0000176" id="MAR04377" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04377" sboTerm="SBO:0000176" id="R_MAR04377" name="D-Fructose-1,6-bisphosphate 1-phosphohydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -133768,7 +133842,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04377">
+            <rdf:Description rdf:about="#R_MAR04377">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.3.11"/>
@@ -133783,18 +133857,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01841c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01841c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01845c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01845c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="fbp"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04381" sboTerm="SBO:0000176" id="MAR04381" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04381" sboTerm="SBO:0000176" id="R_MAR04381" name="D-glucose-6-phosphate aldose-ketose-isomerase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -133803,7 +133877,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04381">
+            <rdf:Description rdf:about="#R_MAR04381">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/5.3.1.9"/>
@@ -133818,16 +133892,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01845c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01845c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01968c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01968c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Pgi"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04391" sboTerm="SBO:0000176" id="MAR04391" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04391" sboTerm="SBO:0000176" id="R_MAR04391" name="D-glyceraldehyde-3-phosphate aldose-ketose-isomerase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -133836,7 +133910,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04391">
+            <rdf:Description rdf:about="#R_MAR04391">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/5.3.1.1"/>
@@ -133850,16 +133924,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01690c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01690c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01939c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01939c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Tpi"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04394" sboTerm="SBO:0000176" id="MAR04394" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04394" sboTerm="SBO:0000176" id="R_MAR04394" name="ATP:D-glucose 6-phosphotransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -133868,7 +133942,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04394">
+            <rdf:Description rdf:about="#R_MAR04394">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.1.1"/>
@@ -133884,16 +133958,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01965c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01965c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01968c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01968c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR04396" sboTerm="SBO:0000176" id="MAR04396" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04396" sboTerm="SBO:0000176" id="R_MAR04396" name="alpha-D-glucose 1,6-phosphomutase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -133902,7 +133976,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04396">
+            <rdf:Description rdf:about="#R_MAR04396">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/5.4.2.2"/>
@@ -133920,10 +133994,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01967c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01967c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01968c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01968c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -133933,7 +134007,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04521" sboTerm="SBO:0000176" id="MAR04521" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04521" sboTerm="SBO:0000176" id="R_MAR04521" name="D-Glucose-6-phosphate phosphohydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -133942,7 +134016,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04521">
+            <rdf:Description rdf:about="#R_MAR04521">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.3.9"/>
@@ -133956,18 +134030,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01968r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01968r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01965r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01965r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="G6P"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06410" sboTerm="SBO:0000176" id="MAR06410" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06410" sboTerm="SBO:0000176" id="R_MAR06410" name="pyruvate:[dihydrolipoyllysine-residue acetyltransferase]-lipoyllysine 2-oxidoreductase (decarboxylating, acceptor-acetylating)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -133976,7 +134050,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06410">
+            <rdf:Description rdf:about="#R_MAR06410">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.2.4.1"/>
@@ -133990,13 +134064,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02393m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02819m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02393m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02819m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01596m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02869m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01596m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02869m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:and>
@@ -134005,7 +134079,7 @@
           </fbc:and>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06412" sboTerm="SBO:0000176" id="MAR06412" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06412" sboTerm="SBO:0000176" id="R_MAR06412" name="acetyl-CoA:enzyme N6-(dihydrolipoyl)lysine S-acetyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -134014,7 +134088,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06412">
+            <rdf:Description rdf:about="#R_MAR06412">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.12"/>
@@ -134028,12 +134102,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02869m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02869m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01701m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01701m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:and>
@@ -134044,7 +134118,7 @@
           </fbc:and>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07745" sboTerm="SBO:0000176" id="MAR07745" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07745" sboTerm="SBO:0000176" id="R_MAR07745" name="D-glucose 1-epimerase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -134052,7 +134126,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07745">
+            <rdf:Description rdf:about="#R_MAR07745">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/5.1.3.3"/>
@@ -134067,16 +134141,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01388c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01388c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01965c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01965c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG10467"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07747" sboTerm="SBO:0000176" id="MAR07747" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07747" sboTerm="SBO:0000176" id="R_MAR07747" name="ADP:D-glucose 6-phosphotransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -134084,7 +134158,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07747">
+            <rdf:Description rdf:about="#R_MAR07747">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.1.147"/>
@@ -134099,19 +134173,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01965c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01965c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01334c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01968c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01968c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG6650"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08360" sboTerm="SBO:0000176" id="MAR08360" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08360" sboTerm="SBO:0000176" id="R_MAR08360" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -134119,7 +134193,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08360">
+            <rdf:Description rdf:about="#R_MAR08360">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.11.1.6"/>
@@ -134132,18 +134206,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01796x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02041x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01796x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01249x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040x" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01249x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040x" stoichiometry="2" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Cat"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08652" sboTerm="SBO:0000176" id="MAR08652" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08652" sboTerm="SBO:0000176" id="R_MAR08652" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -134151,7 +134225,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08652">
+            <rdf:Description rdf:about="#R_MAR08652">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.3.9"/>
@@ -134164,19 +134238,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01420r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01965r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01420r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01965r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01596r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01968r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02578r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01596r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01968r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02578r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="G6P"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08757" sboTerm="SBO:0000176" id="MAR08757" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08757" sboTerm="SBO:0000176" id="R_MAR08757" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -134184,7 +134258,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08757">
+            <rdf:Description rdf:about="#R_MAR08757">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ETOHtx"/>
@@ -134196,21 +134270,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01796c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01796c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01249c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01249c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Cyp18a1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03989" sboTerm="SBO:0000176" id="MAR03989" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03989" sboTerm="SBO:0000176" id="R_MAR03989" name="maltose glucohydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -134219,7 +134293,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03989">
+            <rdf:Description rdf:about="#R_MAR03989">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.2.1.20"/>
@@ -134233,14 +134307,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02450e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02450e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01965e" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01965e" stoichiometry="2" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR04122" sboTerm="SBO:0000176" id="MAR04122" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04122" sboTerm="SBO:0000176" id="R_MAR04122" name="UDP-glucose:NAD+ 6-oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -134249,7 +134323,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04122">
+            <rdf:Description rdf:about="#R_MAR04122">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.22"/>
@@ -134263,20 +134337,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03108c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03108c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM02553c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03109c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM02553c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03109c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="sgl"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04837" sboTerm="SBO:0000176" id="MAR04837" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04837" sboTerm="SBO:0000176" id="R_MAR04837" name="alpha,alpha-trehalose glucohydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -134285,7 +134359,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04837">
+            <rdf:Description rdf:about="#R_MAR04837">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.2.1.28"/>
@@ -134299,11 +134373,11 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03039e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01965e" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01965e" stoichiometry="2" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -134312,7 +134386,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05395" sboTerm="SBO:0000176" id="MAR05395" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05395" sboTerm="SBO:0000176" id="R_MAR05395" name="UDP-alpha-D-glucose:glycogenin alpha-D-glucosyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -134321,7 +134395,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05395">
+            <rdf:Description rdf:about="#R_MAR05395">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.186"/>
@@ -134334,19 +134408,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01996c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03108c" stoichiometry="8" constant="true"/>
+          <speciesReference species="M_MAM01996c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03108c" stoichiometry="8" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01995c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="8" constant="true"/>
-          <speciesReference species="MAM03106c" stoichiometry="8" constant="true"/>
+          <speciesReference species="M_MAM01995c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="8" constant="true"/>
+          <speciesReference species="M_MAM03106c" stoichiometry="8" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Gyg"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05396" sboTerm="SBO:0000176" id="MAR05396" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05396" sboTerm="SBO:0000176" id="R_MAR05396" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -134355,7 +134429,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05396">
+            <rdf:Description rdf:about="#R_MAR05396">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.11"/>
@@ -134368,13 +134442,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01995c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03108c" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM01995c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03108c" stoichiometry="3" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01990c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM03106c" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM01990c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM03106c" stoichiometry="3" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -134383,7 +134457,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR09727" sboTerm="SBO:0000176" id="MAR09727" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09727" sboTerm="SBO:0000176" id="R_MAR09727" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -134391,7 +134465,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09727">
+            <rdf:Description rdf:about="#R_MAR09727">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.11"/>
@@ -134402,12 +134476,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03108c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03108c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03161c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03161c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -134415,7 +134489,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05397" sboTerm="SBO:0000176" id="MAR05397" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05397" sboTerm="SBO:0000176" id="R_MAR05397" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -134424,7 +134498,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05397">
+            <rdf:Description rdf:about="#R_MAR05397">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.18"/>
@@ -134437,16 +134511,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01990c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01990c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01992c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01992c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="AGBE"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05398" sboTerm="SBO:0000176" id="MAR05398" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05398" sboTerm="SBO:0000176" id="R_MAR05398" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -134455,7 +134529,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05398">
+            <rdf:Description rdf:about="#R_MAR05398">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.1"/>
@@ -134468,18 +134542,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01992c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM01992c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="3" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01967c" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM01991c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01967c" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM01991c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="GlyP"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05399" sboTerm="SBO:0000176" id="MAR05399" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05399" sboTerm="SBO:0000176" id="R_MAR05399" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -134488,7 +134562,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05399">
+            <rdf:Description rdf:about="#R_MAR05399">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.25"/>
@@ -134500,16 +134574,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01991c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01991c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01994c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01994c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG9485"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05400" sboTerm="SBO:0000176" id="MAR05400" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05400" sboTerm="SBO:0000176" id="R_MAR05400" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -134518,7 +134592,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05400">
+            <rdf:Description rdf:about="#R_MAR05400">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.2.1.33"/>
@@ -134530,18 +134604,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01994c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01994c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01965c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01993c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01965c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01993c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG9485"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05401" sboTerm="SBO:0000176" id="MAR05401" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05401" sboTerm="SBO:0000176" id="R_MAR05401" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -134550,7 +134624,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05401">
+            <rdf:Description rdf:about="#R_MAR05401">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.1"/>
@@ -134561,18 +134635,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01993c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="7" constant="true"/>
+          <speciesReference species="M_MAM01993c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="7" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01967c" stoichiometry="7" constant="true"/>
-          <speciesReference species="MAM01996c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01967c" stoichiometry="7" constant="true"/>
+          <speciesReference species="M_MAM01996c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="GlyP"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08568" sboTerm="SBO:0000176" id="MAR08568" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08568" sboTerm="SBO:0000176" id="R_MAR08568" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -134580,7 +134654,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08568">
+            <rdf:Description rdf:about="#R_MAR08568">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.2.1.1"/>
@@ -134592,12 +134666,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02445c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02445c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01840c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02448c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01840c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02448c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -134606,7 +134680,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08569" sboTerm="SBO:0000176" id="MAR08569" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08569" sboTerm="SBO:0000176" id="R_MAR08569" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -134614,7 +134688,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08569">
+            <rdf:Description rdf:about="#R_MAR08569">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.2.1.1"/>
@@ -134626,12 +134700,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02445e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02445e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01965e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02448e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01965e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02448e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -134640,7 +134714,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08570" sboTerm="SBO:0000176" id="MAR08570" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08570" sboTerm="SBO:0000176" id="R_MAR08570" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -134648,7 +134722,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08570">
+            <rdf:Description rdf:about="#R_MAR08570">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.2.1.1"/>
@@ -134660,12 +134734,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02448c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02448c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01840c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02446c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01840c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02446c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -134674,7 +134748,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08571" sboTerm="SBO:0000176" id="MAR08571" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08571" sboTerm="SBO:0000176" id="R_MAR08571" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -134682,7 +134756,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08571">
+            <rdf:Description rdf:about="#R_MAR08571">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.2.1.1"/>
@@ -134694,12 +134768,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040e" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02448e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040e" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02448e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01965e" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02446e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01965e" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02446e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -134708,7 +134782,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08572" sboTerm="SBO:0000176" id="MAR08572" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08572" sboTerm="SBO:0000176" id="R_MAR08572" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -134716,7 +134790,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08572">
+            <rdf:Description rdf:about="#R_MAR08572">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.2.1.1"/>
@@ -134729,12 +134803,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02446c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02446c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01840c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02447c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01840c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02447c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -134743,7 +134817,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08573" sboTerm="SBO:0000176" id="MAR08573" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08573" sboTerm="SBO:0000176" id="R_MAR08573" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -134751,7 +134825,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08573">
+            <rdf:Description rdf:about="#R_MAR08573">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.2.1.1"/>
@@ -134764,12 +134838,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02446e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02446e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01965e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02447e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01965e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02447e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -134778,7 +134852,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08574" sboTerm="SBO:0000176" id="MAR08574" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08574" sboTerm="SBO:0000176" id="R_MAR08574" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -134786,7 +134860,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08574">
+            <rdf:Description rdf:about="#R_MAR08574">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.2.1.1"/>
@@ -134799,12 +134873,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02447c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02447c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01840c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02449c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01840c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02449c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -134813,7 +134887,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08575" sboTerm="SBO:0000176" id="MAR08575" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08575" sboTerm="SBO:0000176" id="R_MAR08575" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -134821,7 +134895,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08575">
+            <rdf:Description rdf:about="#R_MAR08575">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.2.1.1"/>
@@ -134834,12 +134908,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02447e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02447e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01965e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02449e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01965e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02449e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -134848,7 +134922,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08576" sboTerm="SBO:0000176" id="MAR08576" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08576" sboTerm="SBO:0000176" id="R_MAR08576" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -134856,7 +134930,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08576">
+            <rdf:Description rdf:about="#R_MAR08576">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.2.1.1"/>
@@ -134869,12 +134943,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02449c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02449c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01840c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02451c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01840c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02451c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -134883,7 +134957,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08577" sboTerm="SBO:0000176" id="MAR08577" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08577" sboTerm="SBO:0000176" id="R_MAR08577" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -134891,7 +134965,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08577">
+            <rdf:Description rdf:about="#R_MAR08577">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.2.1.1"/>
@@ -134904,12 +134978,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02449e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02449e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01965e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02451e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01965e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02451e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -134918,7 +134992,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08578" sboTerm="SBO:0000176" id="MAR08578" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08578" sboTerm="SBO:0000176" id="R_MAR08578" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -134926,7 +135000,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08578">
+            <rdf:Description rdf:about="#R_MAR08578">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.2.1.1"/>
@@ -134939,12 +135013,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02451c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02451c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01840c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02452c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01840c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02452c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -134953,7 +135027,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08579" sboTerm="SBO:0000176" id="MAR08579" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08579" sboTerm="SBO:0000176" id="R_MAR08579" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -134961,7 +135035,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08579">
+            <rdf:Description rdf:about="#R_MAR08579">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.2.1.1"/>
@@ -134974,12 +135048,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02451e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02451e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01965e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02452e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01965e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02452e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -134988,7 +135062,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08581" sboTerm="SBO:0000176" id="MAR08581" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08581" sboTerm="SBO:0000176" id="R_MAR08581" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -134996,7 +135070,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08581">
+            <rdf:Description rdf:about="#R_MAR08581">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.2.1.1"/>
@@ -135007,12 +135081,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02452e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02452e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01965e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02450e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01965e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02450e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -135021,7 +135095,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08591" sboTerm="SBO:0000176" id="MAR08591" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08591" sboTerm="SBO:0000176" id="R_MAR08591" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -135029,7 +135103,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08591">
+            <rdf:Description rdf:about="#R_MAR08591">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.2.1.20"/>
@@ -135042,15 +135116,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02452c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02452c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01965c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02450c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01965c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02450c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08580" sboTerm="SBO:0000176" id="MAR08580" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08580" sboTerm="SBO:0000176" id="R_MAR08580" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -135058,7 +135132,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08580">
+            <rdf:Description rdf:about="#R_MAR08580">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.2.1.1"/>
@@ -135069,12 +135143,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02452c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02452c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01840c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02450c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01840c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02450c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -135083,7 +135157,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08582" sboTerm="SBO:0000176" id="MAR08582" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08582" sboTerm="SBO:0000176" id="R_MAR08582" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -135091,7 +135165,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08582">
+            <rdf:Description rdf:about="#R_MAR08582">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.2.1.1"/>
@@ -135102,11 +135176,11 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02450c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02450c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01840c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01840c" stoichiometry="2" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -135115,7 +135189,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08587" sboTerm="SBO:0000176" id="MAR08587" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08587" sboTerm="SBO:0000176" id="R_MAR08587" name="maltose glucohydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -135123,7 +135197,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08587">
+            <rdf:Description rdf:about="#R_MAR08587">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.2.1.20"/>
@@ -135137,14 +135211,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02450c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02450c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01965c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01965c" stoichiometry="2" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08585" sboTerm="SBO:0000176" id="MAR08585" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08585" sboTerm="SBO:0000176" id="R_MAR08585" name="3-phospho-D-glyceroyl-phosphate:alpha-D-glucose-1-phosphate 6-phosphotransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -135152,7 +135226,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08585">
+            <rdf:Description rdf:about="#R_MAR08585">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.1.106"/>
@@ -135167,12 +135241,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00247c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01967c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00247c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01967c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00913c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01966c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00913c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01966c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -135181,7 +135255,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03944" sboTerm="SBO:0000176" id="MAR03944" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03944" sboTerm="SBO:0000176" id="R_MAR03944" name="UTP:alpha-D-glucose-1-phosphate uridylyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -135190,7 +135264,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03944">
+            <rdf:Description rdf:about="#R_MAR03944">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.7.9"/>
@@ -135204,19 +135278,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01967c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03130c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01967c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03130c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02759c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03108c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03108c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="UGP"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04128" sboTerm="SBO:0000176" id="MAR04128" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04128" sboTerm="SBO:0000176" id="R_MAR04128" name="UDP-glucose 4-epimerase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -135225,7 +135299,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04128">
+            <rdf:Description rdf:about="#R_MAR04128">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/5.1.3.2"/>
@@ -135239,16 +135313,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03107c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03107c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03108c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03108c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Gale"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04130" sboTerm="SBO:0000176" id="MAR04130" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04130" sboTerm="SBO:0000176" id="R_MAR04130" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -135256,7 +135330,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04130">
+            <rdf:Description rdf:about="#R_MAR04130">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.1.6"/>
@@ -135269,19 +135343,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01910c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01910c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01322c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01322c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Galk"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04131" sboTerm="SBO:0000176" id="MAR04131" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04131" sboTerm="SBO:0000176" id="R_MAR04131" name="UDP-glucose:alpha-D-galactose-1-phosphate uridylyltransferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -135289,7 +135363,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04131">
+            <rdf:Description rdf:about="#R_MAR04131">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.7.12"/>
@@ -135303,18 +135377,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01967c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03107c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01967c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03107c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01322c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03108c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01322c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03108c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Galt"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04132" sboTerm="SBO:0000176" id="MAR04132" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04132" sboTerm="SBO:0000176" id="R_MAR04132" name="UDP-glucose:alpha-D-galactose-1-phosphate uridylyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -135323,7 +135397,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04132">
+            <rdf:Description rdf:about="#R_MAR04132">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.7.12"/>
@@ -135336,18 +135410,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01911c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03108c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01911c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03108c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01967c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03107c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01967c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03107c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Galt"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04303" sboTerm="SBO:0000176" id="MAR04303" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04303" sboTerm="SBO:0000176" id="R_MAR04303" name="sucrose glucohydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -135356,7 +135430,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04303">
+            <rdf:Description rdf:about="#R_MAR04303">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.2.1.10"/>
@@ -135372,15 +135446,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02945e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02945e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01840e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01965e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01840e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01965e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR04414" sboTerm="SBO:0000176" id="MAR04414" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04414" sboTerm="SBO:0000176" id="R_MAR04414" name="ATP:alpha-D-galactose 1-phosphotransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -135389,7 +135463,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04414">
+            <rdf:Description rdf:about="#R_MAR04414">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.1.6"/>
@@ -135402,19 +135476,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01910c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01910c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01911c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01911c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Galk"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04415" sboTerm="SBO:0000176" id="MAR04415" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04415" sboTerm="SBO:0000176" id="R_MAR04415" name="Lactose galactohydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -135423,7 +135497,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04415">
+            <rdf:Description rdf:about="#R_MAR04415">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.2.1.23"/>
@@ -135438,12 +135512,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02332e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02332e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01910e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01965e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01910e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01965e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:and>
@@ -135452,7 +135526,7 @@
           </fbc:and>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04416" sboTerm="SBO:0000176" id="MAR04416" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04416" sboTerm="SBO:0000176" id="R_MAR04416" name="Galactosylglycerol galactohydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -135461,7 +135535,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04416">
+            <rdf:Description rdf:about="#R_MAR04416">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.2.1.22"/>
@@ -135475,12 +135549,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01913e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01913e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01910e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01983e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01910e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01983e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -135490,7 +135564,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04774" sboTerm="SBO:0000176" id="MAR04774" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04774" sboTerm="SBO:0000176" id="R_MAR04774" name="CTP:D-tagatose 6-phosphate 1-phosphotransferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -135499,7 +135573,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04774">
+            <rdf:Description rdf:about="#R_MAR04774">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.1.11"/>
@@ -135513,19 +135587,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01424c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02955c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01424c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02955c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01623c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01746c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01623c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01746c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Pfk"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04775" sboTerm="SBO:0000176" id="MAR04775" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04775" sboTerm="SBO:0000176" id="R_MAR04775" name="ITP:D-tagatose 6-phosphate 1-phosphotransferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -135534,7 +135608,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04775">
+            <rdf:Description rdf:about="#R_MAR04775">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.1.11"/>
@@ -135548,19 +135622,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01746c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02193c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01746c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02193c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02161c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02955c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02161c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02955c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Pfk"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04831" sboTerm="SBO:0000176" id="MAR04831" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04831" sboTerm="SBO:0000176" id="R_MAR04831" name="Lactose:(acceptor) 3-oxidoreductase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -135568,7 +135642,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04831">
+            <rdf:Description rdf:about="#R_MAR04831">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.99.13"/>
@@ -135581,16 +135655,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02332e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02332e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00812e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00812e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR04832" sboTerm="SBO:0000176" id="MAR04832" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04832" sboTerm="SBO:0000176" id="R_MAR04832" name="3-Ketolactose galactohydrolase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -135599,7 +135673,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04832">
+            <rdf:Description rdf:about="#R_MAR04832">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.2.1.23"/>
@@ -135613,12 +135687,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00810e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01965e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00810e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01965e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00812e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00812e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:and>
@@ -135627,7 +135701,7 @@
           </fbc:and>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07674" sboTerm="SBO:0000176" id="MAR07674" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07674" sboTerm="SBO:0000176" id="R_MAR07674" name="UDP-alpha-D-galactose:D-glucose 4-beta-D-galactosyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -135635,7 +135709,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07674">
+            <rdf:Description rdf:about="#R_MAR07674">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.22"/>
@@ -135649,16 +135723,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01965g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03107g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01965g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03107g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02332g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02332g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106g" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08761" sboTerm="SBO:0000176" id="MAR08761" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08761" sboTerm="SBO:0000176" id="R_MAR08761" name="ATP:D-tagatose 6-phosphotransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -135666,7 +135740,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08761">
+            <rdf:Description rdf:about="#R_MAR08761">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.1.3"/>
@@ -135680,19 +135754,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01745c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01745c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01746c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01746c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG7328"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08762" sboTerm="SBO:0000176" id="MAR08762" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08762" sboTerm="SBO:0000176" id="R_MAR08762" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -135700,7 +135774,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08762">
+            <rdf:Description rdf:about="#R_MAR08762">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.1.2.13"/>
@@ -135713,17 +135787,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01746c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01746c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01690c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01981c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01690c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01981c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Ald1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08764" sboTerm="SBO:0000176" id="MAR08764" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08764" sboTerm="SBO:0000176" id="R_MAR08764" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -135731,7 +135805,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08764">
+            <rdf:Description rdf:about="#R_MAR08764">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.2.1.108"/>
@@ -135745,18 +135819,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02332l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02332l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01910l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01965l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01910l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01965l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG9701"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08766" sboTerm="SBO:0000176" id="MAR08766" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08766" sboTerm="SBO:0000176" id="R_MAR08766" name="galactitol:NADP+ 1-oxidoreductase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -135764,7 +135838,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08766">
+            <rdf:Description rdf:about="#R_MAR08766">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.21"/>
@@ -135778,19 +135852,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01910c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01910c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01909c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01909c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Akr1B"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08767" sboTerm="SBO:0000176" id="MAR08767" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08767" sboTerm="SBO:0000176" id="R_MAR08767" name="UTP:alpha-D-galactose-1-phosphate uridylyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -135798,7 +135872,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08767">
+            <rdf:Description rdf:about="#R_MAR08767">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.7.12"/>
@@ -135812,19 +135886,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01322c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03130c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01322c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03130c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02759c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03107c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03107c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Galt"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00454" sboTerm="SBO:0000176" id="MAR00454" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00454" sboTerm="SBO:0000176" id="R_MAR00454" name="ATP:D-glyceraldehyde 3-phosphotransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -135833,7 +135907,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00454">
+            <rdf:Description rdf:about="#R_MAR00454">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.1.28"/>
@@ -135847,16 +135921,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01981c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01981c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01939c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01939c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR04297" sboTerm="SBO:0000176" id="MAR04297" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04297" sboTerm="SBO:0000176" id="R_MAR04297" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -135865,7 +135939,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04297">
+            <rdf:Description rdf:about="#R_MAR04297">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.1.105"/>
@@ -135879,19 +135953,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01845c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01845c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01843c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01843c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Pfrx"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04310" sboTerm="SBO:0000176" id="MAR04310" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04310" sboTerm="SBO:0000176" id="R_MAR04310" name="ATP:D-fructose 1-phosphotransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -135900,7 +135974,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04310">
+            <rdf:Description rdf:about="#R_MAR04310">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.1.3"/>
@@ -135914,19 +135988,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01840c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01840c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01842c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01842c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG7328"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04315" sboTerm="SBO:0000176" id="MAR04315" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04315" sboTerm="SBO:0000176" id="R_MAR04315" name="D-Glucitol:NAD+ 2-oxidoreductase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -135934,7 +136008,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04315">
+            <rdf:Description rdf:about="#R_MAR04315">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.14"/>
@@ -135947,16 +136021,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01682c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01682c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01840c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01840c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR04316" sboTerm="SBO:0000176" id="MAR04316" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04316" sboTerm="SBO:0000176" id="R_MAR04316" name="D-Glucitol:NADP+ 1-oxidoreductase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -135964,7 +136038,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04316">
+            <rdf:Description rdf:about="#R_MAR04316">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.21"/>
@@ -135977,19 +136051,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01682c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01682c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01965c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01965c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Akr1B"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04317" sboTerm="SBO:0000176" id="MAR04317" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04317" sboTerm="SBO:0000176" id="R_MAR04317" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -135998,7 +136072,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04317">
+            <rdf:Description rdf:about="#R_MAR04317">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.1.-"/>
@@ -136010,13 +136084,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01682c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01682c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02917c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02917c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -136026,7 +136100,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04318" sboTerm="SBO:0000176" id="MAR04318" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04318" sboTerm="SBO:0000176" id="R_MAR04318" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -136034,7 +136108,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04318">
+            <rdf:Description rdf:about="#R_MAR04318">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.1.-"/>
@@ -136045,13 +136119,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01840c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01840c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01844c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01844c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -136061,7 +136135,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04319" sboTerm="SBO:0000176" id="MAR04319" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04319" sboTerm="SBO:0000176" id="R_MAR04319" name="ATP:D-fructose 6-phosphotransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -136070,7 +136144,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04319">
+            <rdf:Description rdf:about="#R_MAR04319">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.1.1"/>
@@ -136084,16 +136158,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01840c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01840c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01845c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01845c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR04320" sboTerm="SBO:0000176" id="MAR04320" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04320" sboTerm="SBO:0000176" id="R_MAR04320" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -136102,7 +136176,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04320">
+            <rdf:Description rdf:about="#R_MAR04320">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.1.-"/>
@@ -136114,13 +136188,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02454c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02454c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01717c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01717c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -136130,7 +136204,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04356" sboTerm="SBO:0000176" id="MAR04356" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04356" sboTerm="SBO:0000176" id="R_MAR04356" name="D-fructose 1-phosphate D-glyceraldehyde-3-phosphate-lyase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -136139,7 +136213,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04356">
+            <rdf:Description rdf:about="#R_MAR04356">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.1.2.13"/>
@@ -136153,17 +136227,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01690c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01981c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01690c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01981c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01842c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01842c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Ald1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04383" sboTerm="SBO:0000176" id="MAR04383" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04383" sboTerm="SBO:0000176" id="R_MAR04383" name="D-mannose-6-phosphate aldose-ketose-isomerase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -136172,7 +136246,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04383">
+            <rdf:Description rdf:about="#R_MAR04383">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/5.3.1.8"/>
@@ -136187,16 +136261,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01845c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01845c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02455c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02455c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Mpi"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04385" sboTerm="SBO:0000176" id="MAR04385" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04385" sboTerm="SBO:0000176" id="R_MAR04385" name="D-mannose 6-phosphate 1,6-phosphomutase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -136205,7 +136279,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04385">
+            <rdf:Description rdf:about="#R_MAR04385">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/5.4.2.8"/>
@@ -136219,10 +136293,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02455c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02455c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02454c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02454c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -136231,7 +136305,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04386" sboTerm="SBO:0000176" id="MAR04386" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04386" sboTerm="SBO:0000176" id="R_MAR04386" name="GDP:D-mannose-1-phosphate guanylyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -136240,7 +136314,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04386">
+            <rdf:Description rdf:about="#R_MAR04386">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.7.22"/>
@@ -136255,13 +136329,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01948c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02454c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01948c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02454c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01951c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01951c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -136271,7 +136345,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04387" sboTerm="SBO:0000176" id="MAR04387" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04387" sboTerm="SBO:0000176" id="R_MAR04387" name="GTP:alpha-D-mannose-1-phosphate guanylyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -136280,7 +136354,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04387">
+            <rdf:Description rdf:about="#R_MAR04387">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.7.13"/>
@@ -136293,13 +136367,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02034c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02454c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02034c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02454c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01951c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01951c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -136308,7 +136382,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04399" sboTerm="SBO:0000176" id="MAR04399" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04399" sboTerm="SBO:0000176" id="R_MAR04399" name="GDP-alpha-D-mannose 4,6-hydro-lyase (GDP-4-dehydro-alpha-D-rhamnose-forming)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -136317,7 +136391,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04399">
+            <rdf:Description rdf:about="#R_MAR04399">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.47"/>
@@ -136331,17 +136405,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01951c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01951c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01949c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01949c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Gmd"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04400" sboTerm="SBO:0000176" id="MAR04400" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04400" sboTerm="SBO:0000176" id="R_MAR04400" name="GDP-L-fucose:NADP+ 4-oxidoreductase (3,5-epimerizing)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -136350,7 +136424,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04400">
+            <rdf:Description rdf:about="#R_MAR04400">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.271"/>
@@ -136364,19 +136438,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01949c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01949c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01950c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01950c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Gmer"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04403" sboTerm="SBO:0000176" id="MAR04403" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04403" sboTerm="SBO:0000176" id="R_MAR04403" name="L-fucose aldose-ketose-isomerase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -136385,7 +136459,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04403">
+            <rdf:Description rdf:about="#R_MAR04403">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/5.3.1.25"/>
@@ -136399,13 +136473,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01159c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01159c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02373c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02373c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR04490" sboTerm="SBO:0000176" id="MAR04490" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04490" sboTerm="SBO:0000176" id="R_MAR04490" name="ATP:D-mannose 6-phosphotransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -136414,7 +136488,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04490">
+            <rdf:Description rdf:about="#R_MAR04490">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.1.1"/>
@@ -136428,16 +136502,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02453c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02453c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02455c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02455c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR04706" sboTerm="SBO:0000176" id="MAR04706" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04706" sboTerm="SBO:0000176" id="R_MAR04706" name="beta-D-fructose-2,6-bisphosphate 2-phosphohydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -136446,7 +136520,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04706">
+            <rdf:Description rdf:about="#R_MAR04706">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.3.46"/>
@@ -136462,12 +136536,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01843c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01843c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01845c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01845c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -136476,7 +136550,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08768" sboTerm="SBO:0000176" id="MAR08768" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08768" sboTerm="SBO:0000176" id="R_MAR08768" name="GDP-L-fucose:NADP+ 4-oxidoreductase (3,5-epimerizing)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -136484,7 +136558,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08768">
+            <rdf:Description rdf:about="#R_MAR08768">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.271"/>
@@ -136498,19 +136572,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01949c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01949c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01950c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01950c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Gmer"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04590" sboTerm="SBO:0000176" id="MAR04590" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04590" sboTerm="SBO:0000176" id="R_MAR04590" name="Xylitol:NADP+ 4-oxidoreductase (L-xylulose-forming)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -136519,7 +136593,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04590">
+            <rdf:Description rdf:about="#R_MAR04590">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.10"/>
@@ -136535,19 +136609,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02425c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02425c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03155c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03155c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG7322"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04591" sboTerm="SBO:0000176" id="MAR04591" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04591" sboTerm="SBO:0000176" id="R_MAR04591" name="xylitol:NAD oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -136556,7 +136630,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04591">
+            <rdf:Description rdf:about="#R_MAR04591">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.15"/>
@@ -136570,19 +136644,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02552c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03155c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03155c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02425c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02425c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG16935"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04592" sboTerm="SBO:0000176" id="MAR04592" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04592" sboTerm="SBO:0000176" id="R_MAR04592" name="xylitol:NADP+ oxidoreductase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -136590,7 +136664,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04592">
+            <rdf:Description rdf:about="#R_MAR04592">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.21"/>
@@ -136605,19 +136679,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01758c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01758c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03155c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03155c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Akr1B"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04593" sboTerm="SBO:0000176" id="MAR04593" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04593" sboTerm="SBO:0000176" id="R_MAR04593" name="xylitol:NAD+ 2-oxidoreductase (D-xylulose-forming)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -136625,7 +136699,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04593">
+            <rdf:Description rdf:about="#R_MAR04593">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.9"/>
@@ -136641,16 +136715,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02552c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03155c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03155c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01759c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR04594" sboTerm="SBO:0000176" id="MAR04594" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04594" sboTerm="SBO:0000176" id="R_MAR04594" name="D-xylose:NADP+ 1-oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -136658,7 +136732,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04594">
+            <rdf:Description rdf:about="#R_MAR04594">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.179"/>
@@ -136671,19 +136745,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01758c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01758c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01757c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01757c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG3609"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04595" sboTerm="SBO:0000176" id="MAR04595" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04595" sboTerm="SBO:0000176" id="R_MAR04595" name="ATP:D-xylulose 5-phosphotransferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -136691,7 +136765,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04595">
+            <rdf:Description rdf:about="#R_MAR04595">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.1.17"/>
@@ -136704,19 +136778,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01761c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01761c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01759c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG3534"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08341" sboTerm="SBO:0000176" id="MAR08341" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08341" sboTerm="SBO:0000176" id="R_MAR08341" name="L-Arabitol:NADP+ 1-oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -136724,7 +136798,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08341">
+            <rdf:Description rdf:about="#R_MAR08341">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.21"/>
@@ -136739,13 +136813,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02337c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02337c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02338c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02338c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -136754,7 +136828,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08342" sboTerm="SBO:0000176" id="MAR08342" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08342" sboTerm="SBO:0000176" id="R_MAR08342" name="L-arabinitol:NAD+ 4-oxidoreductase (L-xylulose-forming)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -136762,7 +136836,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08342">
+            <rdf:Description rdf:about="#R_MAR08342">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ABTD"/>
@@ -136775,16 +136849,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02425c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02425c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02338c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02338c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08344" sboTerm="SBO:0000176" id="MAR08344" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08344" sboTerm="SBO:0000176" id="R_MAR08344" name="L-gulonate:NADP+ 6-oxidoreductase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -136792,7 +136866,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08344">
+            <rdf:Description rdf:about="#R_MAR08344">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GULNDer"/>
@@ -136805,19 +136879,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01973r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01973r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02378r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02378r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG2767"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08352" sboTerm="SBO:0000176" id="MAR08352" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08352" sboTerm="SBO:0000176" id="R_MAR08352" name="L-Gulonate:NAD+ 3-oxidoreductase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -136825,7 +136899,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08352">
+            <rdf:Description rdf:about="#R_MAR08352">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GULN3D"/>
@@ -136840,13 +136914,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00768c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00768c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02378c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02378c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -136855,7 +136929,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08353" sboTerm="SBO:0000176" id="MAR08353" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08353" sboTerm="SBO:0000176" id="R_MAR08353" name="3-Dehydro-L-gulonate carboxy-lyase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -136863,7 +136937,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08353">
+            <rdf:Description rdf:about="#R_MAR08353">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/DHAPAx"/>
@@ -136878,15 +136952,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00768c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00768c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01596c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02425c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01596c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02425c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08726" sboTerm="SBO:0000176" id="MAR08726" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08726" sboTerm="SBO:0000176" id="R_MAR08726" name="ATP:D-ribulose 5-phosphotransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -136894,7 +136968,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08726">
+            <rdf:Description rdf:about="#R_MAR08726">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/RBK_Dr"/>
@@ -136907,19 +136981,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01743c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01743c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02846c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02846c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG13369"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08727" sboTerm="SBO:0000176" id="MAR08727" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08727" sboTerm="SBO:0000176" id="R_MAR08727" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -136927,7 +137001,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08727">
+            <rdf:Description rdf:about="#R_MAR08727">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.117"/>
@@ -136940,19 +137014,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03109c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03109c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01684c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03114c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01684c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03114c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="wol"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08728" sboTerm="SBO:0000176" id="MAR08728" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08728" sboTerm="SBO:0000176" id="R_MAR08728" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -136960,7 +137034,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08728">
+            <rdf:Description rdf:about="#R_MAR08728">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GUR1PP"/>
@@ -136972,15 +137046,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01684c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01684c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01973c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01973c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08729" sboTerm="SBO:0000176" id="MAR08729" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08729" sboTerm="SBO:0000176" id="R_MAR08729" name="UDP-glucuronate glucuronohydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -136988,7 +137062,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08729">
+            <rdf:Description rdf:about="#R_MAR08729">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.1.1.35"/>
@@ -137002,19 +137076,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03109c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03109c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01973c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01973c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Uxs"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06537" sboTerm="SBO:0000176" id="MAR06537" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06537" sboTerm="SBO:0000176" id="R_MAR06537" name="L-gulonate:NADP+ 6-oxidoreductase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -137023,7 +137097,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06537">
+            <rdf:Description rdf:about="#R_MAR06537">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.2"/>
@@ -137036,19 +137110,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01973c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01973c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02378c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02378c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG2767"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01568" sboTerm="SBO:0000176" id="MAR01568" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01568" sboTerm="SBO:0000176" id="R_MAR01568" name="Acetaldehyde:NAD+ oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -137057,7 +137131,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01568">
+            <rdf:Description rdf:about="#R_MAR01568">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.2.1.4"/>
@@ -137074,14 +137148,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01249c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01249c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01252c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02553c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01252c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02553c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -137089,7 +137163,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03853" sboTerm="SBO:0000176" id="MAR03853" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03853" sboTerm="SBO:0000176" id="R_MAR03853" name="(R)-S-Lactoylglutathione methylglyoxal-lyase (isomerizing)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -137097,7 +137171,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03853">
+            <rdf:Description rdf:about="#R_MAR03853">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.4.1.5"/>
@@ -137113,11 +137187,11 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02026c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02475c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02475c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00168c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00168c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -137126,7 +137200,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03854" sboTerm="SBO:0000176" id="MAR03854" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03854" sboTerm="SBO:0000176" id="R_MAR03854" name="Lactaldehyde:NAD+ 1-oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -137134,7 +137208,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03854">
+            <rdf:Description rdf:about="#R_MAR03854">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.21"/>
@@ -137147,19 +137221,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02475c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02475c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02329c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02329c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Akr1B"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03855" sboTerm="SBO:0000176" id="MAR03855" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03855" sboTerm="SBO:0000176" id="R_MAR03855" name="Propane-1,2-diol:NADP+ 1-oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -137167,7 +137241,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03855">
+            <rdf:Description rdf:about="#R_MAR03855">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.21"/>
@@ -137180,19 +137254,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02329c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02329c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02771c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02771c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Akr1B"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03857" sboTerm="SBO:0000176" id="MAR03857" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03857" sboTerm="SBO:0000176" id="R_MAR03857" name="(R)-S-Lactoylglutathione hydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -137200,7 +137274,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03857">
+            <rdf:Description rdf:about="#R_MAR03857">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.2.6"/>
@@ -137214,19 +137288,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00168c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00168c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01716c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02026c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01716c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="tzn"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03859" sboTerm="SBO:0000176" id="MAR03859" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03859" sboTerm="SBO:0000176" id="R_MAR03859" name="(R)-Lactate:ferricytochrome-c 2-oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -137234,7 +137308,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03859">
+            <rdf:Description rdf:about="#R_MAR03859">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.2.4"/>
@@ -137248,19 +137322,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01716c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01824m" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01716c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01824m" stoichiometry="2" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01826m" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02819c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01826m" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02819c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG15429"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04087" sboTerm="SBO:0000176" id="MAR04087" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04087" sboTerm="SBO:0000176" id="R_MAR04087" name="(S)-malate:NAD+ oxidoreductase (decarboxylating)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -137269,7 +137343,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04087">
+            <rdf:Description rdf:about="#R_MAR04087">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.38"/>
@@ -137284,16 +137358,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02439m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02439m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01596m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02819m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01596m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02819m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR04089" sboTerm="SBO:0000176" id="MAR04089" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04089" sboTerm="SBO:0000176" id="R_MAR04089" name="(S)-Malate:NADP+ oxidoreductase(oxaloacetate-decarboxylating)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -137302,7 +137376,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04089">
+            <rdf:Description rdf:about="#R_MAR04089">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.38"/>
@@ -137317,13 +137391,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02439c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02439c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01596c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02819c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01596c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02819c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -137332,7 +137406,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04091" sboTerm="SBO:0000176" id="MAR04091" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04091" sboTerm="SBO:0000176" id="R_MAR04091" name="(S)-Malate:NADP+ oxidoreductase(oxaloacetate-decarboxylating)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -137341,7 +137415,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04091">
+            <rdf:Description rdf:about="#R_MAR04091">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.38"/>
@@ -137356,16 +137430,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02439m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02439m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01596m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02819m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01596m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02819m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR04101" sboTerm="SBO:0000176" id="MAR04101" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04101" sboTerm="SBO:0000176" id="R_MAR04101" name="GTP:oxaloacetate carboxy-lyase (adding GTP" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -137374,7 +137448,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04101">
+            <rdf:Description rdf:about="#R_MAR04101">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.1.1.32"/>
@@ -137390,19 +137464,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02034c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02633c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02034c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02633c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01596c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01948c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02696c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01596c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01948c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02696c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Pepck1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04103" sboTerm="SBO:0000176" id="MAR04103" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04103" sboTerm="SBO:0000176" id="R_MAR04103" name="GTP:oxaloacetate carboxy-lyase (adding GTP" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -137411,7 +137485,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04103">
+            <rdf:Description rdf:about="#R_MAR04103">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.1.1.32"/>
@@ -137427,19 +137501,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02034m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02633m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02034m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02633m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01596m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01948m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02696m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01596m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01948m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02696m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Pepck2"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04143" sboTerm="SBO:0000176" id="MAR04143" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04143" sboTerm="SBO:0000176" id="R_MAR04143" name="Pyruvate:carbon-dioxide ligase (ADP-forming)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -137448,7 +137522,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04143">
+            <rdf:Description rdf:about="#R_MAR04143">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.4.1.1"/>
@@ -137464,21 +137538,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02819m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02819m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02633m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02633m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="PCB"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04193" sboTerm="SBO:0000176" id="MAR04193" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04193" sboTerm="SBO:0000176" id="R_MAR04193" name="CTP:pyruvate 2-O-phosphotransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -137487,7 +137561,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04193">
+            <rdf:Description rdf:about="#R_MAR04193">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.1.40"/>
@@ -137502,19 +137576,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01424c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02696c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01424c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02696c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01623c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02819c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01623c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02819c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="PyK"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08497" sboTerm="SBO:0000176" id="MAR08497" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08497" sboTerm="SBO:0000176" id="R_MAR08497" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -137522,7 +137596,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08497">
+            <rdf:Description rdf:about="#R_MAR08497">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.21"/>
@@ -137539,13 +137613,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02475c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02475c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02148c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02148c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -137554,7 +137628,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08498" sboTerm="SBO:0000176" id="MAR08498" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08498" sboTerm="SBO:0000176" id="R_MAR08498" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -137562,7 +137636,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08498">
+            <rdf:Description rdf:about="#R_MAR08498">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ACTNMO"/>
@@ -137574,21 +137648,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01256c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01256c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02148c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02148c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Cyp18a1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08499" sboTerm="SBO:0000176" id="MAR08499" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08499" sboTerm="SBO:0000176" id="R_MAR08499" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -137596,7 +137670,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08499">
+            <rdf:Description rdf:about="#R_MAR08499">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ACTLMO"/>
@@ -137608,21 +137682,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02148c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02148c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02475c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02475c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Cyp18a1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08500" sboTerm="SBO:0000176" id="MAR08500" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08500" sboTerm="SBO:0000176" id="R_MAR08500" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -137630,7 +137704,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08500">
+            <rdf:Description rdf:about="#R_MAR08500">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.21"/>
@@ -137644,13 +137718,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02148c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02148c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02771c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02771c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -137659,7 +137733,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08501" sboTerm="SBO:0000176" id="MAR08501" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08501" sboTerm="SBO:0000176" id="R_MAR08501" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -137667,7 +137741,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08501">
+            <rdf:Description rdf:about="#R_MAR08501">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.79"/>
@@ -137681,19 +137755,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02475c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02475c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01715c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01715c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG1236"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08502" sboTerm="SBO:0000176" id="MAR08502" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08502" sboTerm="SBO:0000176" id="R_MAR08502" name="(R)-Lactaldehyde:NAD+ oxidoreductase (glutathione-formylating)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -137701,7 +137775,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08502">
+            <rdf:Description rdf:about="#R_MAR08502">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.1"/>
@@ -137715,14 +137789,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00168c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00168c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01715c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02026c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01715c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -137731,7 +137805,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08503" sboTerm="SBO:0000176" id="MAR08503" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08503" sboTerm="SBO:0000176" id="R_MAR08503" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -137739,7 +137813,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08503">
+            <rdf:Description rdf:about="#R_MAR08503">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.2.1.4"/>
@@ -137753,14 +137827,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02329c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02329c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02403c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02403c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -137769,7 +137843,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08504" sboTerm="SBO:0000176" id="MAR08504" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08504" sboTerm="SBO:0000176" id="R_MAR08504" name="(R)-Lactaldehyde:NAD+ 2-oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -137777,7 +137851,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08504">
+            <rdf:Description rdf:about="#R_MAR08504">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.2.1.3"/>
@@ -137791,14 +137865,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01715c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01715c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01716c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02553c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01716c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02553c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -137806,7 +137880,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08506" sboTerm="SBO:0000176" id="MAR08506" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08506" sboTerm="SBO:0000176" id="R_MAR08506" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -137814,7 +137888,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08506">
+            <rdf:Description rdf:about="#R_MAR08506">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.2.1.3"/>
@@ -137827,14 +137901,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02329m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02329m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039m" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02403m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02403m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -137842,7 +137916,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08507" sboTerm="SBO:0000176" id="MAR08507" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08507" sboTerm="SBO:0000176" id="R_MAR08507" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -137850,7 +137924,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08507">
+            <rdf:Description rdf:about="#R_MAR08507">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ALCD21_D"/>
@@ -137863,13 +137937,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02552c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02771c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02771c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01715c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01715c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -137878,7 +137952,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08508" sboTerm="SBO:0000176" id="MAR08508" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08508" sboTerm="SBO:0000176" id="R_MAR08508" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -137886,7 +137960,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08508">
+            <rdf:Description rdf:about="#R_MAR08508">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/LCARS"/>
@@ -137898,13 +137972,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02552c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02771c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02771c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02329c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02329c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -137913,7 +137987,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08509" sboTerm="SBO:0000176" id="MAR08509" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08509" sboTerm="SBO:0000176" id="R_MAR08509" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -137921,7 +137995,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08509">
+            <rdf:Description rdf:about="#R_MAR08509">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.21"/>
@@ -137935,13 +138009,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01715c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01715c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02771c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02771c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -137950,7 +138024,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08511" sboTerm="SBO:0000176" id="MAR08511" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08511" sboTerm="SBO:0000176" id="R_MAR08511" name="(R)-S-Lactoylglutathione hydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -137958,7 +138032,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08511">
+            <rdf:Description rdf:about="#R_MAR08511">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.2.6"/>
@@ -137972,19 +138046,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00168m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00168m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01716m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02026m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01716m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="tzn"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08514" sboTerm="SBO:0000176" id="MAR08514" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08514" sboTerm="SBO:0000176" id="R_MAR08514" name="(S)-Lactate:ferricytochrome-c 2-oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -137992,7 +138066,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08514">
+            <rdf:Description rdf:about="#R_MAR08514">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.2.4"/>
@@ -138005,19 +138079,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01824m" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02403c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01824m" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02403c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01826m" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02819c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01826m" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02819c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG15429"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08516" sboTerm="SBO:0000176" id="MAR08516" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08516" sboTerm="SBO:0000176" id="R_MAR08516" name="glycerone-phosphate phosphate-lyase (methylglyoxal-forming)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -138025,7 +138099,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08516">
+            <rdf:Description rdf:about="#R_MAR08516">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/MGSA"/>
@@ -138040,17 +138114,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01690c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01690c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02475c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02475c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG8778"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08517" sboTerm="SBO:0000176" id="MAR08517" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08517" sboTerm="SBO:0000176" id="R_MAR08517" name="glycerone-phosphate phosphate-lyase (methylglyoxal-forming)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -138058,7 +138132,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08517">
+            <rdf:Description rdf:about="#R_MAR08517">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.3.3"/>
@@ -138073,14 +138147,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01939c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01939c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02475c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02475c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR04280" sboTerm="SBO:0000176" id="MAR04280" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04280" sboTerm="SBO:0000176" id="R_MAR04280" name="(S)-Lactate:NAD+ oxidoreductase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -138089,7 +138163,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04280">
+            <rdf:Description rdf:about="#R_MAR04280">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.27"/>
@@ -138103,13 +138177,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02819m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02819m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02403m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02403m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -138118,7 +138192,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00153" sboTerm="SBO:0000176" id="MAR00153" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00153" sboTerm="SBO:0000176" id="R_MAR00153" name="Propanoate:CoA ligase (AMP-forming)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -138127,7 +138201,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00153">
+            <rdf:Description rdf:about="#R_MAR00153">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.17"/>
@@ -138146,14 +138220,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02772c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02772c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01334c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02774c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02774c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -138162,7 +138236,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03212" sboTerm="SBO:0000176" id="MAR03212" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03212" sboTerm="SBO:0000176" id="R_MAR03212" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -138170,7 +138244,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03212">
+            <rdf:Description rdf:about="#R_MAR03212">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.99.3"/>
@@ -138184,12 +138258,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01802m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02774m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01802m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02774m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01265m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01803m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01265m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01803m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -138199,7 +138273,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03797" sboTerm="SBO:0000176" id="MAR03797" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03797" sboTerm="SBO:0000176" id="R_MAR03797" name="Propanoate:CoA ligase (AMP-forming)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -138208,7 +138282,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03797">
+            <rdf:Description rdf:about="#R_MAR03797">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.17"/>
@@ -138225,14 +138299,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01334m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02774m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02774m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01371m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02772m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02772m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -138241,7 +138315,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03800" sboTerm="SBO:0000176" id="MAR03800" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03800" sboTerm="SBO:0000176" id="R_MAR03800" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -138250,7 +138324,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03800">
+            <rdf:Description rdf:about="#R_MAR03800">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.2.7.2"/>
@@ -138263,14 +138337,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00671m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00671m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01596m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02774m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01596m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02774m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:and>
@@ -138281,7 +138355,7 @@
           </fbc:and>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04282" sboTerm="SBO:0000176" id="MAR04282" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04282" sboTerm="SBO:0000176" id="R_MAR04282" name="3-Oxopropanoate:NAD+ oxidoreductase (decarboxylating, CoA-acetylating)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -138290,7 +138364,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04282">
+            <rdf:Description rdf:about="#R_MAR04282">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.2.1.18"/>
@@ -138307,20 +138381,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00900m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00900m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01596m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01596m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG17896"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04331" sboTerm="SBO:0000176" id="MAR04331" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04331" sboTerm="SBO:0000176" id="R_MAR04331" name="Propionyladenylate:CoA propionyltransferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -138329,7 +138403,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04331">
+            <rdf:Description rdf:about="#R_MAR04331">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.17"/>
@@ -138344,13 +138418,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01334c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02774c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02774c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02775c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02775c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -138359,7 +138433,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04459" sboTerm="SBO:0000176" id="MAR04459" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04459" sboTerm="SBO:0000176" id="R_MAR04459" name="ATP:propanoate adenylyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -138368,7 +138442,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04459">
+            <rdf:Description rdf:about="#R_MAR04459">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.1"/>
@@ -138383,13 +138457,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02772c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02772c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02759c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02775c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02775c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -138398,7 +138472,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04460" sboTerm="SBO:0000176" id="MAR04460" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04460" sboTerm="SBO:0000176" id="R_MAR04460" name="ATP:propanoate adenylyltransferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -138407,7 +138481,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04460">
+            <rdf:Description rdf:about="#R_MAR04460">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.1"/>
@@ -138422,13 +138496,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02772m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02772m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02759m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02775m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02775m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -138437,7 +138511,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04464" sboTerm="SBO:0000176" id="MAR04464" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04464" sboTerm="SBO:0000176" id="R_MAR04464" name="Acetoacetate carboxy-lyase (acetone-forming)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -138446,7 +138520,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04464">
+            <rdf:Description rdf:about="#R_MAR04464">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.1.1.4"/>
@@ -138462,15 +138536,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01253m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01253m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01256m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01596m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01256m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01596m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR04741" sboTerm="SBO:0000176" id="MAR04741" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04741" sboTerm="SBO:0000176" id="R_MAR04741" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -138479,7 +138553,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04741">
+            <rdf:Description rdf:about="#R_MAR04741">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.2.4"/>
@@ -138492,19 +138566,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00799m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00799m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02142m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02142m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG5044"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08078" sboTerm="SBO:0000176" id="MAR08078" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08078" sboTerm="SBO:0000176" id="R_MAR08078" name="propanoyl-CoA:oxaloacetate C-propanoyltransferase (thioester-hydrolysing, 1-carboxyethyl-forming)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -138512,7 +138586,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08078">
+            <rdf:Description rdf:about="#R_MAR08078">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/MCITS"/>
@@ -138527,17 +138601,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02633c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02774c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02633c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02774c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00665c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00665c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09803" sboTerm="SBO:0000176" id="MAR09803" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09803" sboTerm="SBO:0000176" id="R_MAR09803" name="3-oxopropionyl-CoA:NAD+ oxidoreductase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -138545,7 +138619,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09803">
+            <rdf:Description rdf:about="#R_MAR09803">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R00744"/>
@@ -138557,17 +138631,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039m" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02444m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02444m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03168m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03168m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09804" sboTerm="SBO:0000176" id="MAR09804" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09804" sboTerm="SBO:0000176" id="R_MAR09804" name="3-hydroxypropionyl-CoA:NADP+ oxidoreductase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -138575,7 +138649,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09804">
+            <rdf:Description rdf:about="#R_MAR09804">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.-"/>
@@ -138588,13 +138662,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00799m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00799m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03168m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03168m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -138619,7 +138693,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00718" sboTerm="SBO:0000176" id="MAR00718" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00718" sboTerm="SBO:0000176" id="R_MAR00718" name="2-Hydroxyglutarate:(acceptor) 2-oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -138627,7 +138701,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00718">
+            <rdf:Description rdf:about="#R_MAR00718">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.99.2"/>
@@ -138640,18 +138714,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01306c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01803c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01306c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01803c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00653c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01802c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00653c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01802c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="L2HGDH"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00719" sboTerm="SBO:0000176" id="MAR00719" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00719" sboTerm="SBO:0000176" id="R_MAR00719" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -138659,7 +138733,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00719">
+            <rdf:Description rdf:about="#R_MAR00719">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.95"/>
@@ -138672,19 +138746,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01306c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01306c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00653c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00653c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG6287"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01434" sboTerm="SBO:0000176" id="MAR01434" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01434" sboTerm="SBO:0000176" id="R_MAR01434" name="acetyl-CoA:acetyl-CoA C-acetyltransferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -138693,7 +138767,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01434">
+            <rdf:Description rdf:about="#R_MAR01434">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.9"/>
@@ -138709,17 +138783,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01255c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01255c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01261c" stoichiometry="2" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Acat2"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03163" sboTerm="SBO:0000176" id="MAR03163" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03163" sboTerm="SBO:0000176" id="R_MAR03163" name="butanoyl-CoA:electron-transfer flavoprotein 2,3-oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -138728,7 +138802,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03163">
+            <rdf:Description rdf:about="#R_MAR03163">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.99.3"/>
@@ -138743,12 +138817,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01412m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01802m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01412m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01802m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01622m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01803m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01622m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01803m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -138758,7 +138832,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04461" sboTerm="SBO:0000176" id="MAR04461" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04461" sboTerm="SBO:0000176" id="R_MAR04461" name="(R)-3-Hydroxybutanoate:NAD+ oxidoreductase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -138767,7 +138841,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04461">
+            <rdf:Description rdf:about="#R_MAR04461">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.30"/>
@@ -138783,19 +138857,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00157m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00157m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01253m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01253m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG8888"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04604" sboTerm="SBO:0000176" id="MAR04604" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04604" sboTerm="SBO:0000176" id="R_MAR04604" name="acetyl-CoA:acetoacetyl-CoA C-acetyltransferase (thioester-hydrolysing, carboxymethyl-forming)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -138804,7 +138878,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04604">
+            <rdf:Description rdf:about="#R_MAR04604">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.3.10"/>
@@ -138818,20 +138892,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01255x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01261x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01255x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01597x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02131x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02131x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Hmgs"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05351" sboTerm="SBO:0000176" id="MAR05351" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05351" sboTerm="SBO:0000176" id="R_MAR05351" name="2-hydroxybutyrate:NAD+ oxidoreductase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -138839,7 +138913,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05351">
+            <rdf:Description rdf:about="#R_MAR05351">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.27"/>
@@ -138852,13 +138926,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00648c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00648c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00671c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00671c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -138867,7 +138941,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07709" sboTerm="SBO:0000176" id="MAR07709" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07709" sboTerm="SBO:0000176" id="R_MAR07709" name="(3R)-3-hydroxybutanoyl-CoA hydro-lyase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -138875,7 +138949,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07709">
+            <rdf:Description rdf:about="#R_MAR07709">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.55"/>
@@ -138890,17 +138964,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00159m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00159m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01622m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01622m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG8778"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04052" sboTerm="SBO:0000176" id="MAR04052" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04052" sboTerm="SBO:0000176" id="R_MAR04052" name="ATP:D-ribose-5-phosphate diphosphotransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -138909,7 +138983,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04052">
+            <rdf:Description rdf:about="#R_MAR04052">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.6.1"/>
@@ -138924,19 +138998,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02845c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02845c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01334c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02806c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02806c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Prps"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04304" sboTerm="SBO:0000176" id="MAR04304" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04304" sboTerm="SBO:0000176" id="R_MAR04304" name="D-glucose-6-phosphate:NADP+ 1-oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -138945,7 +139019,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04304">
+            <rdf:Description rdf:about="#R_MAR04304">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.49"/>
@@ -138959,54 +139033,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01968r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554r" stoichiometry="1" constant="true"/>
-        </listOfReactants>
-        <listOfProducts>
-          <speciesReference species="MAM01961r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555r" stoichiometry="1" constant="true"/>
-        </listOfProducts>
-        <fbc:geneProductAssociation>
-          <fbc:geneProductRef fbc:geneProduct="Zw"/>
-        </fbc:geneProductAssociation>
-      </reaction>
-      <reaction metaid="MAR04306" sboTerm="SBO:0000176" id="MAR04306" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
-        <notes>
-          <body xmlns="http://www.w3.org/1999/xhtml">
-            <p>Confidence Level: 0</p>
-            <p>AUTHORS: PMID:15774558;PMID:16756494;PMID:2753047;PMID:4169027</p>
-          </body>
-        </notes>
-        <annotation>
-          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04306">
-              <bqbiol:is>
-                <rdf:Bag>
-                  <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.49"/>
-                  <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/G6PDH2r"/>
-                  <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R00835"/>
-                  <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR99907"/>
-                  <rdf:li rdf:resource="https://identifiers.org/vmhreaction/G6PDH2r"/>
-                </rdf:Bag>
-              </bqbiol:is>
-            </rdf:Description>
-          </rdf:RDF>
-        </annotation>
-        <listOfReactants>
-          <speciesReference species="MAM01961c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01968r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01968c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01961r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Zw"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04350" sboTerm="SBO:0000176" id="MAR04350" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04350" sboTerm="SBO:0000176" id="R_MAR04350" name="ATP:D-ribose 5-phosphotransferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -139015,7 +139054,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04350">
+            <rdf:Description rdf:about="#R_MAR04350">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.1.15"/>
@@ -139030,19 +139069,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02845c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02845c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02843c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02843c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG13369"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04351" sboTerm="SBO:0000176" id="MAR04351" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04351" sboTerm="SBO:0000176" id="R_MAR04351" name="D-ribose-5-phosphate aldose-ketose-isomerase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -139051,7 +139090,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04351">
+            <rdf:Description rdf:about="#R_MAR04351">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/5.3.1.6"/>
@@ -139065,16 +139104,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02845r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02845r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02846r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02846r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Rpi"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04352" sboTerm="SBO:0000176" id="MAR04352" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04352" sboTerm="SBO:0000176" id="R_MAR04352" name="D-ribose-5-phosphate aldose-ketose-isomerase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -139083,7 +139122,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04352">
+            <rdf:Description rdf:about="#R_MAR04352">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/5.3.1.6"/>
@@ -139098,16 +139137,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02845c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02845c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02846c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02846c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Rpi"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04354" sboTerm="SBO:0000176" id="MAR04354" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04354" sboTerm="SBO:0000176" id="R_MAR04354" name="D-Ribose 1,5-phosphomutase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -139116,7 +139155,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04354">
+            <rdf:Description rdf:about="#R_MAR04354">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/5.4.2.2"/>
@@ -139132,10 +139171,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02844c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02844c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02845c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02845c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -139145,7 +139184,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04398" sboTerm="SBO:0000176" id="MAR04398" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04398" sboTerm="SBO:0000176" id="R_MAR04398" name="2-deoxy-D-ribose-5-phosphate acetaldehyde-lyase (D-glyceraldehyde-3-phosphate-forming)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -139154,7 +139193,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04398">
+            <rdf:Description rdf:about="#R_MAR04398">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.1.2.4"/>
@@ -139168,17 +139207,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00640c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00640c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01249c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01939c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01249c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01939c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Dera"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04404" sboTerm="SBO:0000176" id="MAR04404" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04404" sboTerm="SBO:0000176" id="R_MAR04404" name="D-Fructose 6-phosphate:D-glyceraldehyde-3-phosphate glycolaldehyde transferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -139187,7 +139226,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04404">
+            <rdf:Description rdf:about="#R_MAR04404">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.2.1.1"/>
@@ -139202,12 +139241,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01761c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01785c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01761c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01785c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01845c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01939c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01845c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01939c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -139216,7 +139255,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04473" sboTerm="SBO:0000176" id="MAR04473" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04473" sboTerm="SBO:0000176" id="R_MAR04473" name="6-phospho-D-gluconate:NADP+ 2-oxidoreductase (decarboxylating)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -139225,7 +139264,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04473">
+            <rdf:Description rdf:about="#R_MAR04473">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.44"/>
@@ -139241,28 +139280,29 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01169r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01169r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01596r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02846r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01596r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02846r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Pgd"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04474" sboTerm="SBO:0000176" id="MAR04474" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04474" sboTerm="SBO:0000176" id="R_MAR04474" name="Phosphogluconate dehydrogenase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
-            <p>AUTHORS: PMID:12398160;PMID:1504088;PMID:15558954;PMID:16756494;PMID:2753047;PMID:3943305;PMID:6212636;PMID:7194116;PMID:7225115;PMID:7623792</p>
+            <p>AUTHORS: PMID:12398160;PMID:1504088;PMID:15558954;PMID:16756494;PMID:2753047;PMID:3943305;PMID:6212636;PMID:7194116;PMID:7225115;PMID:7623792;PMID:4382012;PMID:13575411</p>
+            <p>NOTES: Harpers illustrated Biochemistry (2009) 28th edition pages 174-183, ISBN:9781282335806</p>
           </body>
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04474">
+            <rdf:Description rdf:about="#R_MAR04474">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.44"/>
@@ -139278,19 +139318,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01169c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01169c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01596c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02846c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01596c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02846c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Pgd"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04476" sboTerm="SBO:0000176" id="MAR04476" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04476" sboTerm="SBO:0000176" id="R_MAR04476" name="ATP:D-gluconate 6-phosphotransferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -139299,7 +139339,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04476">
+            <rdf:Description rdf:about="#R_MAR04476">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.57"/>
@@ -139312,19 +139352,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01169c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01169c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01683c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01683c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG4210"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04477" sboTerm="SBO:0000176" id="MAR04477" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04477" sboTerm="SBO:0000176" id="R_MAR04477" name="D-Ribulose-5-phosphate 3-epimerase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -139333,7 +139373,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04477">
+            <rdf:Description rdf:about="#R_MAR04477">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/5.1.3.1"/>
@@ -139347,16 +139387,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01761c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01761c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02846c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02846c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Rpe"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04501" sboTerm="SBO:0000176" id="MAR04501" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04501" sboTerm="SBO:0000176" id="R_MAR04501" name="sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glycolaldehyde transferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -139365,7 +139405,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04501">
+            <rdf:Description rdf:about="#R_MAR04501">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.2.1.1"/>
@@ -139380,12 +139420,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01761c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02845c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01761c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02845c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01939c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02884c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01939c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02884c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -139394,7 +139434,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04565" sboTerm="SBO:0000176" id="MAR04565" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04565" sboTerm="SBO:0000176" id="R_MAR04565" name="sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -139403,7 +139443,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04565">
+            <rdf:Description rdf:about="#R_MAR04565">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.2.1.2"/>
@@ -139417,18 +139457,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01939c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02884c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01939c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02884c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01785c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01845c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01785c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01845c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Taldo"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04567" sboTerm="SBO:0000176" id="MAR04567" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04567" sboTerm="SBO:0000176" id="R_MAR04567" name="ATP:Sedoheptulose 7-phosphate 1-phosphotransferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -139437,7 +139477,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04567">
+            <rdf:Description rdf:about="#R_MAR04567">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.1.11"/>
@@ -139451,19 +139491,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02883c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02883c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02884c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02884c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Pfk"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04568" sboTerm="SBO:0000176" id="MAR04568" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04568" sboTerm="SBO:0000176" id="R_MAR04568" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -139472,7 +139512,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04568">
+            <rdf:Description rdf:about="#R_MAR04568">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.1.11"/>
@@ -139484,19 +139524,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02883c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02883c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02884c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03130c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02884c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03130c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Pfk"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR09800" sboTerm="SBO:0000176" id="MAR09800" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09800" sboTerm="SBO:0000176" id="R_MAR09800" name="ATP:sedoheptulose 1-phosphotransferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -139504,7 +139544,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09800">
+            <rdf:Description rdf:about="#R_MAR09800">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.1.3"/>
@@ -139517,19 +139557,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03165c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03165c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03166c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03166c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG7328"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04623" sboTerm="SBO:0000176" id="MAR04623" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04623" sboTerm="SBO:0000176" id="R_MAR04623" name="6-Phospho-D-glucono-1,5-lactone lactonohydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -139538,7 +139578,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04623">
+            <rdf:Description rdf:about="#R_MAR04623">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.31"/>
@@ -139552,18 +139592,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01961r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01961r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01169r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01169r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG17333"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04625" sboTerm="SBO:0000176" id="MAR04625" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04625" sboTerm="SBO:0000176" id="R_MAR04625" name="6-Phospho-D-glucono-1,5-lactone lactonohydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -139572,7 +139612,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04625">
+            <rdf:Description rdf:about="#R_MAR04625">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.31"/>
@@ -139586,18 +139626,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01961c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01961c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01169c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01169c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG17333"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04710" sboTerm="SBO:0000176" id="MAR04710" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04710" sboTerm="SBO:0000176" id="R_MAR04710" name="2-deoxy-D-ribose 1-phosphate 1,5-phosphomutase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -139606,7 +139646,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04710">
+            <rdf:Description rdf:about="#R_MAR04710">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/5.4.2.7"/>
@@ -139619,10 +139659,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00639c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00639c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00640c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00640c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -139631,7 +139671,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04841" sboTerm="SBO:0000176" id="MAR04841" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04841" sboTerm="SBO:0000176" id="R_MAR04841" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -139640,7 +139680,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04841">
+            <rdf:Description rdf:about="#R_MAR04841">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.2.1.5"/>
@@ -139652,13 +139692,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02843c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02843c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02552c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02841c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02841c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -139666,7 +139706,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08074" sboTerm="SBO:0000176" id="MAR08074" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08074" sboTerm="SBO:0000176" id="R_MAR08074" name="ATP:2-deoxy-D-ribose 5-phosphotransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -139674,7 +139714,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08074">
+            <rdf:Description rdf:about="#R_MAR08074">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.1.15"/>
@@ -139688,19 +139728,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01672c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01672c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00640c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00640c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG13369"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08653" sboTerm="SBO:0000176" id="MAR08653" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08653" sboTerm="SBO:0000176" id="R_MAR08653" name="D-glucose-6-phosphate:NAD+ 1-oxidoreductase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -139708,7 +139748,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08653">
+            <rdf:Description rdf:about="#R_MAR08653">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.31"/>
@@ -139722,19 +139762,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01961r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01961r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01968r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01968r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG17333"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03998" sboTerm="SBO:0000176" id="MAR03998" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03998" sboTerm="SBO:0000176" id="R_MAR03998" name="ADP phosphohydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -139743,7 +139783,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03998">
+            <rdf:Description rdf:about="#R_MAR03998">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.6.1.5"/>
@@ -139759,13 +139799,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01334c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -139774,7 +139814,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04000" sboTerm="SBO:0000176" id="MAR04000" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04000" sboTerm="SBO:0000176" id="R_MAR04000" name="ATP diphosphate-lyase (cyclizing" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -139783,7 +139823,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04000">
+            <rdf:Description rdf:about="#R_MAR04000">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.6.1.1"/>
@@ -139798,14 +139838,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01419c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01419c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR04002" sboTerm="SBO:0000176" id="MAR04002" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04002" sboTerm="SBO:0000176" id="R_MAR04002" name="ATP:AMP phosphotransferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -139814,7 +139854,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04002">
+            <rdf:Description rdf:about="#R_MAR04002">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.4.3"/>
@@ -139830,11 +139870,11 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01285c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="2" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01334c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -139847,7 +139887,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04004" sboTerm="SBO:0000176" id="MAR04004" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04004" sboTerm="SBO:0000176" id="R_MAR04004" name="ATP:AMP phosphotransferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -139856,7 +139896,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04004">
+            <rdf:Description rdf:about="#R_MAR04004">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.4.3"/>
@@ -139872,11 +139912,11 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01285m" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01285m" stoichiometry="2" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01334m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -139889,7 +139929,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04010" sboTerm="SBO:0000176" id="MAR04010" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04010" sboTerm="SBO:0000176" id="R_MAR04010" name="adenosine 5&apos;-monophosphate phosphohydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -139898,7 +139938,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04010">
+            <rdf:Description rdf:about="#R_MAR04010">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.3.5"/>
@@ -139914,12 +139954,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01334c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01280c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01280c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -139927,7 +139967,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04081" sboTerm="SBO:0000176" id="MAR04081" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04081" sboTerm="SBO:0000176" id="R_MAR04081" name="adenosine 5&apos;-monophosphate phosphohydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -139936,7 +139976,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04081">
+            <rdf:Description rdf:about="#R_MAR04081">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.3.5"/>
@@ -139952,12 +139992,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01334e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01280e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01280e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -139965,7 +140005,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04082" sboTerm="SBO:0000176" id="MAR04082" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04082" sboTerm="SBO:0000176" id="R_MAR04082" name="adenosine 5&apos;-monophosphate phosphohydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -139974,7 +140014,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04082">
+            <rdf:Description rdf:about="#R_MAR04082">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.3.5"/>
@@ -139989,12 +140029,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01334m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01280m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01280m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -140002,7 +140042,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04012" sboTerm="SBO:0000176" id="MAR04012" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04012" sboTerm="SBO:0000176" id="R_MAR04012" name="ATP:adenosine 5&apos;-phosphotransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -140011,7 +140051,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04012">
+            <rdf:Description rdf:about="#R_MAR04012">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.1.20"/>
@@ -140028,19 +140068,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01280c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01280c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01334c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Adk2"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04014" sboTerm="SBO:0000176" id="MAR04014" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04014" sboTerm="SBO:0000176" id="R_MAR04014" name="adenosine 3&apos;,5&apos;-phosphate 5&apos;-nucleotidohydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -140049,7 +140089,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04014">
+            <rdf:Description rdf:about="#R_MAR04014">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.4.17"/>
@@ -140063,12 +140103,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01419c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01419c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01334c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -140082,7 +140122,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04020" sboTerm="SBO:0000176" id="MAR04020" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04020" sboTerm="SBO:0000176" id="R_MAR04020" name="ATP:GMP phosphotransferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -140091,7 +140131,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04020">
+            <rdf:Description rdf:about="#R_MAR04020">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.4.8"/>
@@ -140107,18 +140147,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01948c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01948c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02016c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02016c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG11811"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04022" sboTerm="SBO:0000176" id="MAR04022" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04022" sboTerm="SBO:0000176" id="R_MAR04022" name="GTP diphosphate-lyase (cyclizing" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -140127,7 +140167,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04022">
+            <rdf:Description rdf:about="#R_MAR04022">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.6.1.1"/>
@@ -140142,14 +140182,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02034c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02034c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01433c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01433c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR04038" sboTerm="SBO:0000176" id="MAR04038" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04038" sboTerm="SBO:0000176" id="R_MAR04038" name="IMP 1,2-hydrolase (decyclizing)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -140158,7 +140198,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04038">
+            <rdf:Description rdf:about="#R_MAR04038">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.5.4.10"/>
@@ -140172,17 +140212,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01804c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01804c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02167c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02167c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG11089"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04040" sboTerm="SBO:0000176" id="MAR04040" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04040" sboTerm="SBO:0000176" id="R_MAR04040" name="IMP:NAD+ oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -140191,7 +140231,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04040">
+            <rdf:Description rdf:about="#R_MAR04040">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.205"/>
@@ -140205,20 +140245,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02167c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02167c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03150c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03150c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="ras"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04042" sboTerm="SBO:0000176" id="MAR04042" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04042" sboTerm="SBO:0000176" id="R_MAR04042" name="IMP:L-aspartate ligase (GDP-forming)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -140227,7 +140267,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04042">
+            <rdf:Description rdf:about="#R_MAR04042">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.3.4.4"/>
@@ -140241,21 +140281,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01370c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02034c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02167c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01370c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02034c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02167c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01282c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01948c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01282c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01948c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="AdSS"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04046" sboTerm="SBO:0000176" id="MAR04046" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04046" sboTerm="SBO:0000176" id="R_MAR04046" name="Xanthosine-5&apos;-phosphate:L-glutamine amido-ligase (AMP-forming)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -140264,7 +140304,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04046">
+            <rdf:Description rdf:about="#R_MAR04046">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.3.5.2"/>
@@ -140280,23 +140320,23 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01975c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03150c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01975c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03150c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01334c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01974c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02016c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01974c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02016c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02759c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="bur"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04048" sboTerm="SBO:0000176" id="MAR04048" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04048" sboTerm="SBO:0000176" id="R_MAR04048" name="Guanosine 3&apos;,5&apos;-cyclic phosphate 5&apos;-nucleotidohydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -140305,7 +140345,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04048">
+            <rdf:Description rdf:about="#R_MAR04048">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.4.17"/>
@@ -140320,12 +140360,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01433c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01433c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02016c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02016c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -140339,7 +140379,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04080" sboTerm="SBO:0000176" id="MAR04080" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04080" sboTerm="SBO:0000176" id="R_MAR04080" name="AMP aminohydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -140348,7 +140388,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04080">
+            <rdf:Description rdf:about="#R_MAR04080">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.5.4.17"/>
@@ -140363,18 +140403,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01334c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02167c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02578c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02167c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02578c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="AMPdeam"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04085" sboTerm="SBO:0000176" id="MAR04085" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04085" sboTerm="SBO:0000176" id="R_MAR04085" name="AMP:diphosphate phospho-D-ribosyltransferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -140383,7 +140423,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04085">
+            <rdf:Description rdf:about="#R_MAR04085">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.2.7"/>
@@ -140399,18 +140439,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01334c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01279c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02806c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01279c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02806c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Aprt"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04086" sboTerm="SBO:0000176" id="MAR04086" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04086" sboTerm="SBO:0000176" id="R_MAR04086" name="AMP:diphosphate phospho-D-ribosyltransferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -140419,7 +140459,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04086">
+            <rdf:Description rdf:about="#R_MAR04086">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.2.7"/>
@@ -140434,18 +140474,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01334e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01279e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02806e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01279e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02806e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Aprt"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04134" sboTerm="SBO:0000176" id="MAR04134" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04134" sboTerm="SBO:0000176" id="R_MAR04134" name="GDP phosphohydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -140454,7 +140494,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04134">
+            <rdf:Description rdf:about="#R_MAR04134">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.6.1.5"/>
@@ -140472,13 +140512,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01948e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01948e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02016e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02016e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -140487,7 +140527,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04135" sboTerm="SBO:0000176" id="MAR04135" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04135" sboTerm="SBO:0000176" id="R_MAR04135" name="ATP:GMP phosphotransferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -140496,7 +140536,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04135">
+            <rdf:Description rdf:about="#R_MAR04135">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.4.8"/>
@@ -140512,18 +140552,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01285m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01948m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01948m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01371m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02016m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02016m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG11811"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04168" sboTerm="SBO:0000176" id="MAR04168" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04168" sboTerm="SBO:0000176" id="R_MAR04168" name="GTP diphosphohydrolase (diphosphate-forming)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -140532,7 +140572,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04168">
+            <rdf:Description rdf:about="#R_MAR04168">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.6.1.19"/>
@@ -140548,19 +140588,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02034c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02034c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02016c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02016c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG8891"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04171" sboTerm="SBO:0000176" id="MAR04171" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04171" sboTerm="SBO:0000176" id="R_MAR04171" name="GTP:pyruvate 2-O-phosphotransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -140569,7 +140609,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04171">
+            <rdf:Description rdf:about="#R_MAR04171">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.1.40"/>
@@ -140584,19 +140624,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01948c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02696c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01948c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02696c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02034c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02819c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02034c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02819c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="PyK"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04406" sboTerm="SBO:0000176" id="MAR04406" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04406" sboTerm="SBO:0000176" id="R_MAR04406" name="5-phosphoribosylamine:diphosphate phospho-alpha-D-ribosyltransferase (glutamate-amidating)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -140605,7 +140645,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04406">
+            <rdf:Description rdf:about="#R_MAR04406">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.2.14"/>
@@ -140621,14 +140661,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01975c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02806c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01975c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02806c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01131c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01974c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01131c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01974c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -140637,7 +140677,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04412" sboTerm="SBO:0000176" id="MAR04412" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04412" sboTerm="SBO:0000176" id="R_MAR04412" name="N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -140646,7 +140686,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04412">
+            <rdf:Description rdf:about="#R_MAR04412">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.3.2.2"/>
@@ -140660,11 +140700,11 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01334c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01862c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01862c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01282c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01282c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -140673,7 +140713,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04417" sboTerm="SBO:0000176" id="MAR04417" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04417" sboTerm="SBO:0000176" id="R_MAR04417" name="inosine 5&apos;-monophosphate phosphohydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -140682,7 +140722,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04417">
+            <rdf:Description rdf:about="#R_MAR04417">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.3.5"/>
@@ -140698,12 +140738,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02167c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02167c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02170c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02170c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -140711,7 +140751,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04421" sboTerm="SBO:0000176" id="MAR04421" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04421" sboTerm="SBO:0000176" id="R_MAR04421" name="dATP:pyruvate 2-O-phosphotransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -140720,7 +140760,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04421">
+            <rdf:Description rdf:about="#R_MAR04421">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.1.40"/>
@@ -140735,19 +140775,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01637c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02696c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01637c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02696c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01642c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02819c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01642c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02819c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="PyK"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04449" sboTerm="SBO:0000176" id="MAR04449" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04449" sboTerm="SBO:0000176" id="R_MAR04449" name="guanosine 5&apos;-monophosphate phosphohydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -140756,7 +140796,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04449">
+            <rdf:Description rdf:about="#R_MAR04449">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.3.5"/>
@@ -140772,12 +140812,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02016c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02016c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02038c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02038c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -140785,7 +140825,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04450" sboTerm="SBO:0000176" id="MAR04450" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04450" sboTerm="SBO:0000176" id="R_MAR04450" name="guanosine 5&apos;-monophosphate phosphohydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -140794,7 +140834,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04450">
+            <rdf:Description rdf:about="#R_MAR04450">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.3.5"/>
@@ -140810,12 +140850,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02016e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02016e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02038e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02038e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -140823,7 +140863,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04451" sboTerm="SBO:0000176" id="MAR04451" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04451" sboTerm="SBO:0000176" id="R_MAR04451" name="ATP:guanosine 5&apos;-phosphotransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -140831,7 +140871,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04451">
+            <rdf:Description rdf:about="#R_MAR04451">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.1.73"/>
@@ -140847,16 +140887,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01285m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02016m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02016m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01371m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02038m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02038m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR04453" sboTerm="SBO:0000176" id="MAR04453" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04453" sboTerm="SBO:0000176" id="R_MAR04453" name="Xanthosine-5&apos;-phosphate:ammonia ligase (AMP-forming)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -140865,7 +140905,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04453">
+            <rdf:Description rdf:about="#R_MAR04453">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.3.4.1"/>
@@ -140878,21 +140918,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02578c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03150c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02578c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03150c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01334c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02016c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02016c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="bur"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04480" sboTerm="SBO:0000176" id="MAR04480" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04480" sboTerm="SBO:0000176" id="R_MAR04480" name="ATP:dAMP phosphotransferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -140901,7 +140941,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04480">
+            <rdf:Description rdf:about="#R_MAR04480">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.4.11"/>
@@ -140917,12 +140957,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01637c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01637c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01639c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01639c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -140937,7 +140977,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04481" sboTerm="SBO:0000176" id="MAR04481" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04481" sboTerm="SBO:0000176" id="R_MAR04481" name="Adenosine aminohydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -140946,7 +140986,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04481">
+            <rdf:Description rdf:about="#R_MAR04481">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.5.4.4"/>
@@ -140960,15 +141000,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01280c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01280c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02170c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02578c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02170c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02578c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR04482" sboTerm="SBO:0000176" id="MAR04482" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04482" sboTerm="SBO:0000176" id="R_MAR04482" name="Adenosine aminohydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -140977,7 +141017,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04482">
+            <rdf:Description rdf:about="#R_MAR04482">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.5.4.4"/>
@@ -140991,15 +141031,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01280e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01280e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02170e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02578e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02170e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02578e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR04486" sboTerm="SBO:0000176" id="MAR04486" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04486" sboTerm="SBO:0000176" id="R_MAR04486" name="ITP:D-glucose 6-phosphotransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -141008,7 +141048,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04486">
+            <rdf:Description rdf:about="#R_MAR04486">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.1.1"/>
@@ -141021,16 +141061,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01965c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02193c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01965c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02193c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01968c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02161c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01968c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02161c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR04487" sboTerm="SBO:0000176" id="MAR04487" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04487" sboTerm="SBO:0000176" id="R_MAR04487" name="dATP:D-glucose 6-phosphotransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -141039,7 +141079,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04487">
+            <rdf:Description rdf:about="#R_MAR04487">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.1.1"/>
@@ -141052,16 +141092,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01642c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01965c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01642c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01965c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01637c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01968c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01637c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01968c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR04488" sboTerm="SBO:0000176" id="MAR04488" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04488" sboTerm="SBO:0000176" id="R_MAR04488" name="ITP:D-fructose 6-phosphotransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -141070,7 +141110,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04488">
+            <rdf:Description rdf:about="#R_MAR04488">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.1.1"/>
@@ -141083,16 +141123,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01840c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02193c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01840c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02193c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01845c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02161c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01845c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02161c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR04489" sboTerm="SBO:0000176" id="MAR04489" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04489" sboTerm="SBO:0000176" id="R_MAR04489" name="dATP:D-fructose 6-phosphotransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -141101,7 +141141,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04489">
+            <rdf:Description rdf:about="#R_MAR04489">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.1.1"/>
@@ -141114,16 +141154,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01642c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01840c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01642c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01840c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01637c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01845c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01637c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01845c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR04492" sboTerm="SBO:0000176" id="MAR04492" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04492" sboTerm="SBO:0000176" id="R_MAR04492" name="ITP:D-mannose 6-phosphotransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -141132,7 +141172,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04492">
+            <rdf:Description rdf:about="#R_MAR04492">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.1.1"/>
@@ -141145,16 +141185,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02193c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02453c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02193c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02453c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02161c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02455c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02161c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02455c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR04493" sboTerm="SBO:0000176" id="MAR04493" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04493" sboTerm="SBO:0000176" id="R_MAR04493" name="dATP:D-mannose 6-phosphotransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -141163,7 +141203,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04493">
+            <rdf:Description rdf:about="#R_MAR04493">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.1.1"/>
@@ -141176,16 +141216,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01642c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02453c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01642c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02453c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01637c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02455c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01637c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02455c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR04495" sboTerm="SBO:0000176" id="MAR04495" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04495" sboTerm="SBO:0000176" id="R_MAR04495" name="ITP:D-glucosamine 6-phosphotransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -141194,7 +141234,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04495">
+            <rdf:Description rdf:about="#R_MAR04495">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.1.1"/>
@@ -141207,16 +141247,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01962c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02193c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01962c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02193c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01963c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02161c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01963c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02161c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR04496" sboTerm="SBO:0000176" id="MAR04496" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04496" sboTerm="SBO:0000176" id="R_MAR04496" name="dATP:D-glucosamine 6-phosphotransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -141225,7 +141265,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04496">
+            <rdf:Description rdf:about="#R_MAR04496">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.1.1"/>
@@ -141238,16 +141278,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01642c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01962c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01642c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01962c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01637c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01963c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01637c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01963c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR04518" sboTerm="SBO:0000176" id="MAR04518" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04518" sboTerm="SBO:0000176" id="R_MAR04518" name="Guanine aminohydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -141256,7 +141296,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04518">
+            <rdf:Description rdf:about="#R_MAR04518">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.5.4.3"/>
@@ -141270,18 +141310,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02037c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02037c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02578c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03148c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02578c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03148c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="DhpD"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04519" sboTerm="SBO:0000176" id="MAR04519" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04519" sboTerm="SBO:0000176" id="R_MAR04519" name="hypoxanthine:NAD+ oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -141290,7 +141330,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04519">
+            <rdf:Description rdf:about="#R_MAR04519">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.17.1.4"/>
@@ -141305,20 +141345,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02159c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02159c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03148c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03148c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="ry"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04520" sboTerm="SBO:0000176" id="MAR04520" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04520" sboTerm="SBO:0000176" id="R_MAR04520" name="Hypoxanthine:oxygen oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -141327,7 +141367,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04520">
+            <rdf:Description rdf:about="#R_MAR04520">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.17.3.2"/>
@@ -141340,19 +141380,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02159c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02159c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02041c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03148c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03148c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="ry"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04573" sboTerm="SBO:0000176" id="MAR04573" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04573" sboTerm="SBO:0000176" id="R_MAR04573" name="dGTP:pyruvate 2-O-phosphotransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -141361,7 +141401,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04573">
+            <rdf:Description rdf:about="#R_MAR04573">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.1.40"/>
@@ -141376,19 +141416,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01680c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02696c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01680c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02696c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01688c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02819c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01688c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02819c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="PyK"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04574" sboTerm="SBO:0000176" id="MAR04574" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04574" sboTerm="SBO:0000176" id="R_MAR04574" name="inosine:phosphate alpha-D-ribosyltransferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -141397,7 +141437,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04574">
+            <rdf:Description rdf:about="#R_MAR04574">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.2.1"/>
@@ -141411,18 +141451,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02170c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02170c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02159c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02844c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02159c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02844c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG16758"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04602" sboTerm="SBO:0000176" id="MAR04602" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04602" sboTerm="SBO:0000176" id="R_MAR04602" name="2&apos;-deoxyguanosine 5&apos;-monophosphate phosphohydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -141431,7 +141471,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04602">
+            <rdf:Description rdf:about="#R_MAR04602">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.3.5"/>
@@ -141445,12 +141485,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01686c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01686c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01669c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01669c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -141458,7 +141498,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04603" sboTerm="SBO:0000176" id="MAR04603" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04603" sboTerm="SBO:0000176" id="R_MAR04603" name="Deoxyguanosine:orthophosphate ribosyltransferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -141467,7 +141507,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04603">
+            <rdf:Description rdf:about="#R_MAR04603">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.2.1"/>
@@ -141482,18 +141522,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00639c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02037c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00639c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02037c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01669c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01669c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG16758"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04611" sboTerm="SBO:0000176" id="MAR04611" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04611" sboTerm="SBO:0000176" id="R_MAR04611" name="2&apos;-deoxyadenosine 5&apos;-triphosphate:oxydized-thioredoxin 2&apos;-oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -141502,7 +141542,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04611">
+            <rdf:Description rdf:about="#R_MAR04611">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.17.4.1"/>
@@ -141516,13 +141556,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02990c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02990c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01642c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02666c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01642c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02666c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -141534,7 +141574,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04612" sboTerm="SBO:0000176" id="MAR04612" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04612" sboTerm="SBO:0000176" id="R_MAR04612" name="2&apos;-deoxyadenosine 5&apos;-diphosphate:oxidized-thioredoxin 2&apos;-oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -141543,7 +141583,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04612">
+            <rdf:Description rdf:about="#R_MAR04612">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.17.4.1"/>
@@ -141557,13 +141597,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02990c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02990c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01637c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02666c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01637c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02666c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -141575,7 +141615,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04614" sboTerm="SBO:0000176" id="MAR04614" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04614" sboTerm="SBO:0000176" id="R_MAR04614" name="2&apos;-deoxyguanosine 5&apos;-triphosphate:oxydized-thioredoxin 2&apos;-oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -141584,7 +141624,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04614">
+            <rdf:Description rdf:about="#R_MAR04614">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.17.4.1"/>
@@ -141598,13 +141638,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02034c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02990c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02034c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02990c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01688c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02666c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01688c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02666c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -141616,7 +141656,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04615" sboTerm="SBO:0000176" id="MAR04615" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04615" sboTerm="SBO:0000176" id="R_MAR04615" name="2&apos;-deoxyguanosine 5&apos;-diphosphate:oxidized-thioredoxin 2&apos;-oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -141625,7 +141665,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04615">
+            <rdf:Description rdf:about="#R_MAR04615">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.17.4.1"/>
@@ -141640,13 +141680,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01948c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02990c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01948c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02990c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01680c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02666c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01680c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02666c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -141658,7 +141698,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04617" sboTerm="SBO:0000176" id="MAR04617" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04617" sboTerm="SBO:0000176" id="R_MAR04617" name="2&apos;-deoxyuridine 5&apos;-triphosphate:oxydized-thioredoxin 2&apos;-oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -141667,7 +141707,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04617">
+            <rdf:Description rdf:about="#R_MAR04617">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.17.4.1"/>
@@ -141681,13 +141721,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01623c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02990c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01623c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02990c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01645c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02666c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01645c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02666c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -141699,7 +141739,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04618" sboTerm="SBO:0000176" id="MAR04618" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04618" sboTerm="SBO:0000176" id="R_MAR04618" name="2&apos;-deoxyuridine 5&apos;-triphosphate:oxydized-thioredoxin 2&apos;-oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -141708,7 +141748,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04618">
+            <rdf:Description rdf:about="#R_MAR04618">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.17.4.1"/>
@@ -141722,13 +141762,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02990c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03130c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02990c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03130c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01756c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02666c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01756c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02666c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -141740,7 +141780,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04619" sboTerm="SBO:0000176" id="MAR04619" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04619" sboTerm="SBO:0000176" id="R_MAR04619" name="2&apos;-deoxycytidine diphosphate:oxidized-thioredoxin 2&apos;-oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -141749,7 +141789,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04619">
+            <rdf:Description rdf:about="#R_MAR04619">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.17.4.1"/>
@@ -141764,13 +141804,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01424c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02990c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01424c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02990c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01643c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02666c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01643c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02666c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -141782,7 +141822,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04621" sboTerm="SBO:0000176" id="MAR04621" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04621" sboTerm="SBO:0000176" id="R_MAR04621" name="2&apos;-deoxyuridine 5&apos;-diphosphate:oxidized-thioredoxin 2&apos;-oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -141791,7 +141831,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04621">
+            <rdf:Description rdf:about="#R_MAR04621">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.17.4.1"/>
@@ -141806,13 +141846,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02990c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02990c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01754c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02666c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01754c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02666c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -141824,7 +141864,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04632" sboTerm="SBO:0000176" id="MAR04632" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04632" sboTerm="SBO:0000176" id="R_MAR04632" name="2&apos;-deoxyadenosine 5&apos;-monophosphate phosphohydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -141833,7 +141873,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04632">
+            <rdf:Description rdf:about="#R_MAR04632">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.3.5"/>
@@ -141847,12 +141887,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01639c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01639c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01666c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01666c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -141860,7 +141900,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04646" sboTerm="SBO:0000176" id="MAR04646" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04646" sboTerm="SBO:0000176" id="R_MAR04646" name="xanthine:NAD+ oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -141869,7 +141909,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04646">
+            <rdf:Description rdf:about="#R_MAR04646">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.17.1.4"/>
@@ -141884,20 +141924,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03148c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03148c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03120c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03120c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="ry"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04648" sboTerm="SBO:0000176" id="MAR04648" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04648" sboTerm="SBO:0000176" id="R_MAR04648" name="xanthine:NAD+ oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -141906,7 +141946,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04648">
+            <rdf:Description rdf:about="#R_MAR04648">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.17.1.4"/>
@@ -141922,20 +141962,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03148x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03148x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03120x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03120x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="ry"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04649" sboTerm="SBO:0000176" id="MAR04649" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04649" sboTerm="SBO:0000176" id="R_MAR04649" name="Xanthine:oxygen oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -141944,7 +141984,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04649">
+            <rdf:Description rdf:about="#R_MAR04649">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.17.3.2"/>
@@ -141959,19 +141999,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03148c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03148c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02041c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03120c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03120c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="ry"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04650" sboTerm="SBO:0000176" id="MAR04650" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04650" sboTerm="SBO:0000176" id="R_MAR04650" name="Xanthine:oxygen oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -141980,7 +142020,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04650">
+            <rdf:Description rdf:about="#R_MAR04650">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.17.3.2"/>
@@ -141996,19 +142036,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03148x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03148x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02041x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03120x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03120x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="ry"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04651" sboTerm="SBO:0000176" id="MAR04651" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04651" sboTerm="SBO:0000176" id="R_MAR04651" name="guanosine:phosphate alpha-D-ribosyltransferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -142017,7 +142057,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04651">
+            <rdf:Description rdf:about="#R_MAR04651">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.2.15"/>
@@ -142032,18 +142072,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02038c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02038c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02037c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02844c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02037c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02844c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG16758"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04663" sboTerm="SBO:0000176" id="MAR04663" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04663" sboTerm="SBO:0000176" id="R_MAR04663" name="xanthosine:orthophosphate ribosyltransferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -142052,7 +142092,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04663">
+            <rdf:Description rdf:about="#R_MAR04663">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.2.1"/>
@@ -142066,18 +142106,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03149c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03149c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02844c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03148c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02844c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03148c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG16758"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04694" sboTerm="SBO:0000176" id="MAR04694" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04694" sboTerm="SBO:0000176" id="R_MAR04694" name="deoxyadenosine aminohydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -142086,7 +142126,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04694">
+            <rdf:Description rdf:about="#R_MAR04694">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.5.4.4"/>
@@ -142100,15 +142140,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01666c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01666c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01671c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02578c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01671c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02578c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR04695" sboTerm="SBO:0000176" id="MAR04695" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04695" sboTerm="SBO:0000176" id="R_MAR04695" name="Deoxyadenosine:orthophosphate ribosyltransferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -142117,7 +142157,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04695">
+            <rdf:Description rdf:about="#R_MAR04695">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.2.1"/>
@@ -142132,18 +142172,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00639c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01279c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00639c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01279c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01666c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01666c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG16758"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04705" sboTerm="SBO:0000176" id="MAR04705" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04705" sboTerm="SBO:0000176" id="R_MAR04705" name="xanthosine 5&apos;-phosphate phosphohydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -142152,7 +142192,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04705">
+            <rdf:Description rdf:about="#R_MAR04705">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.3.5"/>
@@ -142166,12 +142206,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03150c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03150c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03149c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03149c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -142179,7 +142219,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04709" sboTerm="SBO:0000176" id="MAR04709" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04709" sboTerm="SBO:0000176" id="R_MAR04709" name="Deoxyinosine:orthophosphate ribosyltransferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -142188,7 +142228,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04709">
+            <rdf:Description rdf:about="#R_MAR04709">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.2.1"/>
@@ -142203,18 +142243,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00639c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02159c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00639c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02159c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01671c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01671c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG16758"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04799" sboTerm="SBO:0000176" id="MAR04799" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04799" sboTerm="SBO:0000176" id="R_MAR04799" name="5-Phospho-D-ribosylamine:glycine ligase (ADP-forming)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -142223,7 +142263,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04799">
+            <rdf:Description rdf:about="#R_MAR04799">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.3.4.13"/>
@@ -142237,21 +142277,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01131c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01986c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01131c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01940c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01940c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Gart"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04802" sboTerm="SBO:0000176" id="MAR04802" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04802" sboTerm="SBO:0000176" id="R_MAR04802" name="2-(Formamido)-N1-(5-phosphoribosyl)acetamidine cyclo-ligase (ADP-forming)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -142260,7 +142300,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04802">
+            <rdf:Description rdf:about="#R_MAR04802">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.3.3.1"/>
@@ -142275,20 +142315,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01132c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01132c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01305c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01305c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Gart"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04804" sboTerm="SBO:0000176" id="MAR04804" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04804" sboTerm="SBO:0000176" id="R_MAR04804" name="1-(5-phospho-D-ribosyl)-5-amino-4-imidazolecarboxylate carboxy-lyase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -142297,7 +142337,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04804">
+            <rdf:Description rdf:about="#R_MAR04804">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.1.1.21"/>
@@ -142312,18 +142352,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01130c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01130c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01305c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01596c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01305c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01596c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Paics"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04808" sboTerm="SBO:0000176" id="MAR04808" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04808" sboTerm="SBO:0000176" id="R_MAR04808" name="5&apos;-Phosphoribosylformylglycinamide:L-glutamine amido-ligase (ADP-forming)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -142332,7 +142372,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04808">
+            <rdf:Description rdf:about="#R_MAR04808">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.3.5.3"/>
@@ -142347,23 +142387,23 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01975c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02575c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01975c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02575c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01132c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01974c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01132c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01974c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Pfas"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04810" sboTerm="SBO:0000176" id="MAR04810" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04810" sboTerm="SBO:0000176" id="R_MAR04810" name="1-(5-Phosphoribosyl)-5-amino-4-carboxyimidazole:L-aspartate ligase (ADP-forming)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -142372,7 +142412,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04810">
+            <rdf:Description rdf:about="#R_MAR04810">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.3.2.6"/>
@@ -142387,21 +142427,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01130c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01370c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01130c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01370c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02872c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02872c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Paics"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04812" sboTerm="SBO:0000176" id="MAR04812" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04812" sboTerm="SBO:0000176" id="R_MAR04812" name="1-(5&apos;-Phosphoribosyl)-5-amino-4-(N-succinocarboxamide)-imidazole AMP-lyase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -142410,7 +142450,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04812">
+            <rdf:Description rdf:about="#R_MAR04812">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.3.2.2"/>
@@ -142425,11 +142465,11 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01304c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01862c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01304c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01862c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02872c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02872c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -142438,7 +142478,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04814" sboTerm="SBO:0000176" id="MAR04814" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04814" sboTerm="SBO:0000176" id="R_MAR04814" name="10-Formyltetrahydrofolate:5&apos;-phosphoribosyl-5-amino-4-imidazolecarboxamide formyltransferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -142447,7 +142487,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04814">
+            <rdf:Description rdf:about="#R_MAR04814">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.1.2.3"/>
@@ -142461,18 +142501,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00266c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01304c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00266c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01304c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01804c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02980c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01804c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02980c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG11089"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05301" sboTerm="SBO:0000176" id="MAR05301" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05301" sboTerm="SBO:0000176" id="R_MAR05301" name="GTP:uridine 5&apos;-phosphotransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -142480,7 +142520,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05301">
+            <rdf:Description rdf:about="#R_MAR05301">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.1.48"/>
@@ -142496,13 +142536,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02034c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03123c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02034c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03123c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01948c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03114c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01948c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03114c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -142511,7 +142551,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05353" sboTerm="SBO:0000176" id="MAR05353" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05353" sboTerm="SBO:0000176" id="R_MAR05353" name="ATP:dGMP phosphotransferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -142520,7 +142560,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05353">
+            <rdf:Description rdf:about="#R_MAR05353">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.4.8"/>
@@ -142536,18 +142576,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01680c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01680c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01686c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01686c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG11811"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06602" sboTerm="SBO:0000176" id="MAR06602" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06602" sboTerm="SBO:0000176" id="R_MAR06602" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -142556,7 +142596,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06602">
+            <rdf:Description rdf:about="#R_MAR06602">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.11.1.7"/>
@@ -142568,13 +142608,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02041c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03120c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03120c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01315c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03121c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01315c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03121c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -142583,7 +142623,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06603" sboTerm="SBO:0000176" id="MAR06603" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06603" sboTerm="SBO:0000176" id="R_MAR06603" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -142592,7 +142632,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06603">
+            <rdf:Description rdf:about="#R_MAR06603">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.11.1.7"/>
@@ -142604,13 +142644,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02041e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03120e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03120e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01315e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039e" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03121e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01315e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03121e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -142619,7 +142659,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06605" sboTerm="SBO:0000176" id="MAR06605" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06605" sboTerm="SBO:0000176" id="R_MAR06605" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -142628,7 +142668,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#meta_MAR06605">
+            <rdf:Description rdf:about="#meta_R_MAR06605">
               <bqbiol:is>
                 <rdf:Bag/>
               </bqbiol:is>
@@ -142636,15 +142676,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03119c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03119c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02147c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03120c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02147c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03120c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR06606" sboTerm="SBO:0000176" id="MAR06606" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06606" sboTerm="SBO:0000176" id="R_MAR06606" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -142653,7 +142693,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06606">
+            <rdf:Description rdf:about="#R_MAR06606">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/RE2605C"/>
@@ -142663,15 +142703,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01368c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03119c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01368c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03119c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02489c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03120c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02489c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03120c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR06607" sboTerm="SBO:0000176" id="MAR06607" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06607" sboTerm="SBO:0000176" id="R_MAR06607" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -142679,7 +142719,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06607">
+            <rdf:Description rdf:about="#R_MAR06607">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_6607"/>
@@ -142689,15 +142729,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03119c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03119c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02149c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03120c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02149c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03120c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR06609" sboTerm="SBO:0000176" id="MAR06609" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06609" sboTerm="SBO:0000176" id="R_MAR06609" name="(S)-allantoin amidohydrolase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -142706,7 +142746,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06609">
+            <rdf:Description rdf:about="#R_MAR06609">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.5.2.5"/>
@@ -142721,15 +142761,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01313c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01313c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01312c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01312c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR06610" sboTerm="SBO:0000176" id="MAR06610" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06610" sboTerm="SBO:0000176" id="R_MAR06610" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -142738,7 +142778,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06610">
+            <rdf:Description rdf:about="#R_MAR06610">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/RE3352C"/>
@@ -142748,15 +142788,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01104c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01104c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01313c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01596c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01313c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01596c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR06611" sboTerm="SBO:0000176" id="MAR06611" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06611" sboTerm="SBO:0000176" id="R_MAR06611" name="urate:oxygen oxidoreductase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -142764,7 +142804,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06611">
+            <rdf:Description rdf:about="#R_MAR06611">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.7.3.3"/>
@@ -142779,16 +142819,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03120c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03120c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01104c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02041c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01104c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07144" sboTerm="SBO:0000176" id="MAR07144" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07144" sboTerm="SBO:0000176" id="R_MAR07144" name="ADP-ribose ribophosphohydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -142796,7 +142836,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07144">
+            <rdf:Description rdf:about="#R_MAR07144">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.6.1.13"/>
@@ -142812,19 +142852,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01288c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01288c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01334c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02845c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02845c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG4098"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08755" sboTerm="SBO:0000176" id="MAR08755" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08755" sboTerm="SBO:0000176" id="R_MAR08755" name="Hypoxanthine:oxygen oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -142832,7 +142872,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08755">
+            <rdf:Description rdf:about="#R_MAR08755">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.17.3.2"/>
@@ -142846,19 +142886,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02159x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02159x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02041x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03148x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03148x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="ry"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR09797" sboTerm="SBO:0000176" id="MAR09797" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09797" sboTerm="SBO:0000176" id="R_MAR09797" name="Adenine aminohydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -142866,7 +142906,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09797">
+            <rdf:Description rdf:about="#R_MAR09797">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R01244"/>
@@ -142877,15 +142917,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01279c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01279c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02159c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02578c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02159c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02578c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR04016" sboTerm="SBO:0000176" id="MAR04016" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04016" sboTerm="SBO:0000176" id="R_MAR04016" name="ATP:GDP phosphotransferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -142894,7 +142934,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04016">
+            <rdf:Description rdf:about="#R_MAR04016">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.4.6"/>
@@ -142910,15 +142950,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02034c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02034c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01948c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01948c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR04018" sboTerm="SBO:0000176" id="MAR04018" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04018" sboTerm="SBO:0000176" id="R_MAR04018" name="ATP:GDP phosphotransferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -142927,7 +142967,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04018">
+            <rdf:Description rdf:about="#R_MAR04018">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.4.6"/>
@@ -142943,15 +142983,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01285m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02034m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02034m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01371m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01948m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01948m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR04044" sboTerm="SBO:0000176" id="MAR04044" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04044" sboTerm="SBO:0000176" id="R_MAR04044" name="ATP:dADP phosphotransferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -142960,7 +143000,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04044">
+            <rdf:Description rdf:about="#R_MAR04044">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.4.6"/>
@@ -142976,15 +143016,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01642c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01642c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01637c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01637c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR04291" sboTerm="SBO:0000176" id="MAR04291" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04291" sboTerm="SBO:0000176" id="R_MAR04291" name="ATP:IDP phosphotransferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -142993,7 +143033,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04291">
+            <rdf:Description rdf:about="#R_MAR04291">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.4.6"/>
@@ -143009,15 +143049,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02193c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02193c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02161c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02161c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR04420" sboTerm="SBO:0000176" id="MAR04420" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04420" sboTerm="SBO:0000176" id="R_MAR04420" name="ATP:dADP phosphotransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -143026,7 +143066,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04420">
+            <rdf:Description rdf:about="#R_MAR04420">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.4.6"/>
@@ -143042,15 +143082,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01285m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01642m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01642m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01371m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01637m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01637m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR04570" sboTerm="SBO:0000176" id="MAR04570" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04570" sboTerm="SBO:0000176" id="R_MAR04570" name="ATP:dGDP phosphotransferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -143059,7 +143099,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04570">
+            <rdf:Description rdf:about="#R_MAR04570">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.4.6"/>
@@ -143075,15 +143115,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01688c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01688c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01680c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01680c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR04572" sboTerm="SBO:0000176" id="MAR04572" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04572" sboTerm="SBO:0000176" id="R_MAR04572" name="ATP:dGDP phosphotransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -143092,7 +143132,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04572">
+            <rdf:Description rdf:about="#R_MAR04572">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.4.6"/>
@@ -143108,15 +143148,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01285m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01688m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01688m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01371m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01680m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01680m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR04006" sboTerm="SBO:0000176" id="MAR04006" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04006" sboTerm="SBO:0000176" id="R_MAR04006" name="ATP:UDP phosphotransferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -143125,7 +143165,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04006">
+            <rdf:Description rdf:about="#R_MAR04006">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.4.6"/>
@@ -143141,15 +143181,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03130c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03130c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR04028" sboTerm="SBO:0000176" id="MAR04028" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04028" sboTerm="SBO:0000176" id="R_MAR04028" name="ATP:CDP phosphotransferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -143158,7 +143198,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04028">
+            <rdf:Description rdf:about="#R_MAR04028">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.4.6"/>
@@ -143174,15 +143214,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01623c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01623c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01424c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01424c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR04030" sboTerm="SBO:0000176" id="MAR04030" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04030" sboTerm="SBO:0000176" id="R_MAR04030" name="ATP:CDP phosphotransferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -143191,7 +143231,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04030">
+            <rdf:Description rdf:about="#R_MAR04030">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.4.6"/>
@@ -143207,15 +143247,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01285m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01623m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01623m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01371m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01424m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01424m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR04670" sboTerm="SBO:0000176" id="MAR04670" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04670" sboTerm="SBO:0000176" id="R_MAR04670" name="ATP:dCDP phosphotransferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -143224,7 +143264,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04670">
+            <rdf:Description rdf:about="#R_MAR04670">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.4.6"/>
@@ -143240,15 +143280,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01645c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01645c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01643c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01643c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR04673" sboTerm="SBO:0000176" id="MAR04673" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04673" sboTerm="SBO:0000176" id="R_MAR04673" name="ATP:dUDP phosphotransferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -143257,7 +143297,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04673">
+            <rdf:Description rdf:about="#R_MAR04673">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.4.6"/>
@@ -143273,15 +143313,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01756c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01756c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01754c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01754c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR04675" sboTerm="SBO:0000176" id="MAR04675" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04675" sboTerm="SBO:0000176" id="R_MAR04675" name="ATP:dUDP phosphotransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -143290,7 +143330,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04675">
+            <rdf:Description rdf:about="#R_MAR04675">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.4.6"/>
@@ -143306,15 +143346,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01754m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01754m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01756m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01756m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR06614" sboTerm="SBO:0000176" id="MAR06614" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06614" sboTerm="SBO:0000176" id="R_MAR06614" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -143323,7 +143363,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06614">
+            <rdf:Description rdf:about="#R_MAR06614">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.4.6"/>
@@ -143335,15 +143375,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01637c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01753c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01637c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01753c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01642c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01747c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01642c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01747c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR06615" sboTerm="SBO:0000176" id="MAR06615" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06615" sboTerm="SBO:0000176" id="R_MAR06615" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -143352,7 +143392,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06615">
+            <rdf:Description rdf:about="#R_MAR06615">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.4.6"/>
@@ -143364,15 +143404,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01637m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01753m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01637m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01753m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01642m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01747m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01642m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01747m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR06616" sboTerm="SBO:0000176" id="MAR06616" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06616" sboTerm="SBO:0000176" id="R_MAR06616" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -143381,7 +143421,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06616">
+            <rdf:Description rdf:about="#R_MAR06616">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.4.6"/>
@@ -143393,15 +143433,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01637n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01753n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01637n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01753n" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01642n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01747n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01642n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01747n" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR04635" sboTerm="SBO:0000176" id="MAR04635" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04635" sboTerm="SBO:0000176" id="R_MAR04635" name="ATP:dTDP phosphotransferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -143410,7 +143450,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04635">
+            <rdf:Description rdf:about="#R_MAR04635">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.4.6"/>
@@ -143426,15 +143466,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01753c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01753c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01747c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01747c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03793" sboTerm="SBO:0000176" id="MAR03793" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03793" sboTerm="SBO:0000176" id="R_MAR03793" name="(R)-3-Amino-2-methylpropanoate:pyruvate aminotransferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -143443,7 +143483,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03793">
+            <rdf:Description rdf:about="#R_MAR03793">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.6.1.40"/>
@@ -143458,18 +143498,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00661m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01307m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00661m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01307m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01633m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02819m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01633m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02819m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG11241"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03931" sboTerm="SBO:0000176" id="MAR03931" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03931" sboTerm="SBO:0000176" id="R_MAR03931" name="NADPH:oxidized-thioredoxin oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -143478,7 +143518,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03931">
+            <rdf:Description rdf:about="#R_MAR03931">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.8.1.9"/>
@@ -143492,16 +143532,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02666c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02666c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02990c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02990c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03969" sboTerm="SBO:0000176" id="MAR03969" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03969" sboTerm="SBO:0000176" id="R_MAR03969" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -143509,7 +143549,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03969">
+            <rdf:Description rdf:about="#R_MAR03969">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.1.48"/>
@@ -143523,19 +143563,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02193c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03123c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02193c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03123c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02161c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03114c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02161c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03114c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Uck"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03970" sboTerm="SBO:0000176" id="MAR03970" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03970" sboTerm="SBO:0000176" id="R_MAR03970" name="uridine 5&apos;-monophosphate phosphohydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -143543,7 +143583,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03970">
+            <rdf:Description rdf:about="#R_MAR03970">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.3.5"/>
@@ -143559,12 +143599,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03114c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03114c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03123c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03123c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -143572,7 +143612,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04008" sboTerm="SBO:0000176" id="MAR04008" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04008" sboTerm="SBO:0000176" id="R_MAR04008" name="ATP:UMP phosphotransferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -143581,7 +143621,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04008">
+            <rdf:Description rdf:about="#R_MAR04008">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.4.14"/>
@@ -143598,18 +143638,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03114c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03114c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Cmpk"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04032" sboTerm="SBO:0000176" id="MAR04032" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04032" sboTerm="SBO:0000176" id="R_MAR04032" name="UTP:ammonia ligase (ADP-forming)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -143618,7 +143658,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04032">
+            <rdf:Description rdf:about="#R_MAR04032">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.3.4.2"/>
@@ -143632,21 +143672,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02578c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03130c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02578c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03130c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01623c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01623c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CTPsyn"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04034" sboTerm="SBO:0000176" id="MAR04034" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04034" sboTerm="SBO:0000176" id="R_MAR04034" name="HCO3-:L-glutamine amido-ligase (ADP-forming, carbamate-phosphorylating)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -143655,7 +143695,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04034">
+            <rdf:Description rdf:about="#R_MAR04034">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.3.5.5"/>
@@ -143669,23 +143709,23 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM01975c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01975c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM01420c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01974c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01420c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01974c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="r"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04036" sboTerm="SBO:0000176" id="MAR04036" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04036" sboTerm="SBO:0000176" id="R_MAR04036" name="orotidine-5&apos;-phosphate carboxy-lyase (UMP-forming)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -143694,7 +143734,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04036">
+            <rdf:Description rdf:about="#R_MAR04036">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.1.1.23"/>
@@ -143708,15 +143748,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02660c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02660c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01596c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03114c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01596c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03114c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR04050" sboTerm="SBO:0000176" id="MAR04050" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04050" sboTerm="SBO:0000176" id="R_MAR04050" name="carbamoyl-phosphate:L-aspartate carbamoyltransferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -143725,7 +143765,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04050">
+            <rdf:Description rdf:about="#R_MAR04050">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.1.3.2"/>
@@ -143739,19 +143779,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02559c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02559c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01370c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01420c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01370c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01420c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="r"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04056" sboTerm="SBO:0000176" id="MAR04056" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04056" sboTerm="SBO:0000176" id="R_MAR04056" name="thymidylate 5&apos;-phosphohydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -143760,7 +143800,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04056">
+            <rdf:Description rdf:about="#R_MAR04056">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.3.5"/>
@@ -143777,12 +143817,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01752c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01752c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02996c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02996c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -143790,7 +143830,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04059" sboTerm="SBO:0000176" id="MAR04059" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04059" sboTerm="SBO:0000176" id="R_MAR04059" name="UDP phosphohydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -143799,7 +143839,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04059">
+            <rdf:Description rdf:about="#R_MAR04059">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.6.1.5"/>
@@ -143816,13 +143856,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03114r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03114r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -143831,7 +143871,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04060" sboTerm="SBO:0000176" id="MAR04060" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04060" sboTerm="SBO:0000176" id="R_MAR04060" name="UDP phosphohydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -143840,7 +143880,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04060">
+            <rdf:Description rdf:about="#R_MAR04060">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.6.1.5"/>
@@ -143857,13 +143897,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03114e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03114e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -143872,7 +143912,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04127" sboTerm="SBO:0000176" id="MAR04127" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04127" sboTerm="SBO:0000176" id="R_MAR04127" name="UDP-glucose glucophosphohydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -143881,7 +143921,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04127">
+            <rdf:Description rdf:about="#R_MAR04127">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.6.1.8"/>
@@ -143896,19 +143936,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03108c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03108c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01967c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03114c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01967c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03114c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG42813"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04177" sboTerm="SBO:0000176" id="MAR04177" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04177" sboTerm="SBO:0000176" id="R_MAR04177" name="cytidine-5&apos;-monophosphate phosphohydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -143917,7 +143957,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04177">
+            <rdf:Description rdf:about="#R_MAR04177">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.3.5"/>
@@ -143933,12 +143973,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01590c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01590c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01630c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -143946,7 +143986,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04179" sboTerm="SBO:0000176" id="MAR04179" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04179" sboTerm="SBO:0000176" id="R_MAR04179" name="cytidine-5&apos;-monophosphate phosphohydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -143955,7 +143995,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04179">
+            <rdf:Description rdf:about="#R_MAR04179">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.3.5"/>
@@ -143971,12 +144011,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01590e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01590e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01630e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01630e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -143984,7 +144024,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04182" sboTerm="SBO:0000176" id="MAR04182" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04182" sboTerm="SBO:0000176" id="R_MAR04182" name="GTP:cytidine 5&apos;-phosphotransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -143992,7 +144032,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04182">
+            <rdf:Description rdf:about="#R_MAR04182">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.1.-"/>
@@ -144006,13 +144046,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01630c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02034c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02034c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01590c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01948c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01590c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01948c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -144022,7 +144062,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04194" sboTerm="SBO:0000176" id="MAR04194" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04194" sboTerm="SBO:0000176" id="R_MAR04194" name="UTP:L-glutamine amido-ligase (ADP-forming)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -144031,7 +144071,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04194">
+            <rdf:Description rdf:about="#R_MAR04194">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.3.4.2"/>
@@ -144045,23 +144085,23 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01975c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03130c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01975c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03130c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01623c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01974c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01623c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01974c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CTPsyn"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04210" sboTerm="SBO:0000176" id="MAR04210" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04210" sboTerm="SBO:0000176" id="R_MAR04210" name="UTP:pyruvate 2-O-phosphotransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -144070,7 +144110,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04210">
+            <rdf:Description rdf:about="#R_MAR04210">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.1.40"/>
@@ -144085,19 +144125,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02696c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02696c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02819c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03130c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02819c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03130c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="PyK"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04211" sboTerm="SBO:0000176" id="MAR04211" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04211" sboTerm="SBO:0000176" id="R_MAR04211" name="uridine triphosphate pyrophosphohydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -144106,7 +144146,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04211">
+            <rdf:Description rdf:about="#R_MAR04211">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.6.1.19"/>
@@ -144121,19 +144161,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03130e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03130e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03114e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03114e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG8891"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04343" sboTerm="SBO:0000176" id="MAR04343" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04343" sboTerm="SBO:0000176" id="R_MAR04343" name="UMP:diphosphate phospho-alpha-D-ribosyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -144141,7 +144181,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04343">
+            <rdf:Description rdf:about="#R_MAR04343">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.2.9"/>
@@ -144153,18 +144193,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02806c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03118c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02806c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03118c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02759c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03114c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03114c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="kri"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04345" sboTerm="SBO:0000176" id="MAR04345" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04345" sboTerm="SBO:0000176" id="R_MAR04345" name="5,6-Dihydrouracil:NADP+ oxidoreductase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -144173,7 +144213,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04345">
+            <rdf:Description rdf:about="#R_MAR04345">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.1.2"/>
@@ -144189,19 +144229,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01052c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01052c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03118c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03118c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="sur"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04346" sboTerm="SBO:0000176" id="MAR04346" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04346" sboTerm="SBO:0000176" id="R_MAR04346" name="5,6-Dihydrouracil amidohydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -144210,7 +144250,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04346">
+            <rdf:Description rdf:about="#R_MAR04346">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.5.2.2"/>
@@ -144224,18 +144264,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01052c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01052c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00923c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00923c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CRMP"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04470" sboTerm="SBO:0000176" id="MAR04470" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04470" sboTerm="SBO:0000176" id="R_MAR04470" name="5,6-dihydrothymine:NAD+ oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -144244,7 +144284,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04470">
+            <rdf:Description rdf:about="#R_MAR04470">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.1.2"/>
@@ -144257,19 +144297,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02997c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02997c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01705c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01705c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="sur"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04471" sboTerm="SBO:0000176" id="MAR04471" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04471" sboTerm="SBO:0000176" id="R_MAR04471" name="5,6-dihydrothymine:NAD+ oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -144278,7 +144318,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04471">
+            <rdf:Description rdf:about="#R_MAR04471">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.1.2"/>
@@ -144291,19 +144331,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02997m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02997m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01705m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01705m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="sur"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04472" sboTerm="SBO:0000176" id="MAR04472" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04472" sboTerm="SBO:0000176" id="R_MAR04472" name="5,6-Dihydrothymine:NADP+ oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -144312,7 +144352,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04472">
+            <rdf:Description rdf:about="#R_MAR04472">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.1.2"/>
@@ -144327,19 +144367,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02997c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02997c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01705c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01705c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="sur"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04484" sboTerm="SBO:0000176" id="MAR04484" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04484" sboTerm="SBO:0000176" id="R_MAR04484" name="thymidylate 5&apos;-phosphohydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -144348,7 +144388,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04484">
+            <rdf:Description rdf:about="#R_MAR04484">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.3.5"/>
@@ -144365,12 +144405,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01752m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01752m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02751m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02996m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02996m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -144378,7 +144418,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04485" sboTerm="SBO:0000176" id="MAR04485" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04485" sboTerm="SBO:0000176" id="R_MAR04485" name="thymidine:phosphate deoxy-alpha-D-ribosyltransferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -144387,7 +144427,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04485">
+            <rdf:Description rdf:about="#R_MAR04485">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.2.1"/>
@@ -144402,18 +144442,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00639c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02997c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00639c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02997c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02996c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02996c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG16758"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04510" sboTerm="SBO:0000176" id="MAR04510" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04510" sboTerm="SBO:0000176" id="R_MAR04510" name="2&apos;-deoxycytidine 5&apos;-monophosphate phosphohydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -144422,7 +144462,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04510">
+            <rdf:Description rdf:about="#R_MAR04510">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.3.5"/>
@@ -144436,12 +144476,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01644c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01644c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01668c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01668c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -144449,7 +144489,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04512" sboTerm="SBO:0000176" id="MAR04512" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04512" sboTerm="SBO:0000176" id="R_MAR04512" name="ATP:dCMP phosphotransferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -144458,7 +144498,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04512">
+            <rdf:Description rdf:about="#R_MAR04512">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.4.14"/>
@@ -144474,18 +144514,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01643c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01643c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01644c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01644c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Cmpk"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04514" sboTerm="SBO:0000176" id="MAR04514" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04514" sboTerm="SBO:0000176" id="R_MAR04514" name="deoxycytidine aminohydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -144493,7 +144533,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04514">
+            <rdf:Description rdf:about="#R_MAR04514">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.5.4.14"/>
@@ -144507,12 +144547,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01668c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01668c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01673c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02578c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01673c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02578c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -144521,7 +144561,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04577" sboTerm="SBO:0000176" id="MAR04577" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04577" sboTerm="SBO:0000176" id="R_MAR04577" name="Orotidine-5&apos;-phosphate:diphosphate phospho-alpha-D-ribosyl-transferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -144530,7 +144570,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04577">
+            <rdf:Description rdf:about="#R_MAR04577">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.2.10"/>
@@ -144544,15 +144584,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02660c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02660c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02659c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02806c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02659c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02806c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR04579" sboTerm="SBO:0000176" id="MAR04579" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04579" sboTerm="SBO:0000176" id="R_MAR04579" name="uridine:phosphate alpha-D-ribosyltransferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -144561,7 +144601,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04579">
+            <rdf:Description rdf:about="#R_MAR04579">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.2.3"/>
@@ -144575,18 +144615,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03123c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03123c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02844c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03118c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02844c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03118c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG6330"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04580" sboTerm="SBO:0000176" id="MAR04580" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04580" sboTerm="SBO:0000176" id="R_MAR04580" name="Cytidine aminohydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -144595,7 +144635,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04580">
+            <rdf:Description rdf:about="#R_MAR04580">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.5.4.5"/>
@@ -144609,12 +144649,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01630c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02578c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03123c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02578c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03123c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -144623,7 +144663,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04608" sboTerm="SBO:0000176" id="MAR04608" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04608" sboTerm="SBO:0000176" id="R_MAR04608" name="(S)-dihydroorotate amidohydrolase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -144632,7 +144672,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04608">
+            <rdf:Description rdf:about="#R_MAR04608">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.5.2.3"/>
@@ -144648,18 +144688,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00180c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00180c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02559c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02559c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="r"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04575" sboTerm="SBO:0000176" id="MAR04575" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04575" sboTerm="SBO:0000176" id="R_MAR04575" name="(S)-dihydroorotate:NAD+ oxidoreductase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -144668,7 +144708,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04575">
+            <rdf:Description rdf:about="#R_MAR04575">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.5.2"/>
@@ -144684,18 +144724,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00180c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03103m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00180c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03103m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02659c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03102m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02659c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03102m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Dhod"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04637" sboTerm="SBO:0000176" id="MAR04637" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04637" sboTerm="SBO:0000176" id="R_MAR04637" name="ATP:dTMP phosphotransferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -144704,7 +144744,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04637">
+            <rdf:Description rdf:about="#R_MAR04637">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.4.12"/>
@@ -144721,18 +144761,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01747c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01747c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01752c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01752c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG5757"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04643" sboTerm="SBO:0000176" id="MAR04643" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04643" sboTerm="SBO:0000176" id="R_MAR04643" name="dUTP nucleotidohydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -144741,7 +144781,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04643">
+            <rdf:Description rdf:about="#R_MAR04643">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.6.1.23"/>
@@ -144758,13 +144798,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01756m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01756m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01755m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01755m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -144773,7 +144813,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04644" sboTerm="SBO:0000176" id="MAR04644" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04644" sboTerm="SBO:0000176" id="R_MAR04644" name="5,10-Methylenetetrahydrofolate:dUMP C-methyltransferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -144782,7 +144822,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04644">
+            <rdf:Description rdf:about="#R_MAR04644">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.1.1.45"/>
@@ -144798,18 +144838,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01045c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01755c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01045c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01755c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01700c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01752c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01700c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01752c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Ts"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04672" sboTerm="SBO:0000176" id="MAR04672" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04672" sboTerm="SBO:0000176" id="R_MAR04672" name="dCTP aminohydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -144817,7 +144857,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04672">
+            <rdf:Description rdf:about="#R_MAR04672">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.5.4.13"/>
@@ -144829,15 +144869,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01645c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01645c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01756c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02578c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01756c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02578c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR04676" sboTerm="SBO:0000176" id="MAR04676" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04676" sboTerm="SBO:0000176" id="R_MAR04676" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -144846,7 +144886,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04676">
+            <rdf:Description rdf:about="#R_MAR04676">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.1.48"/>
@@ -144859,13 +144899,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01630c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01756c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01756c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01590c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01754c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01590c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01754c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -144874,7 +144914,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04736" sboTerm="SBO:0000176" id="MAR04736" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04736" sboTerm="SBO:0000176" id="R_MAR04736" name="(R)-5,6-dihydrothymine amidohydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -144883,7 +144923,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04736">
+            <rdf:Description rdf:about="#R_MAR04736">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.5.2.2"/>
@@ -144898,18 +144938,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01705c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01705c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00922c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00922c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CRMP"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04819" sboTerm="SBO:0000176" id="MAR04819" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04819" sboTerm="SBO:0000176" id="R_MAR04819" name="(R)-3-ureidoisobutyrate amidohydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -144918,7 +144958,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04819">
+            <rdf:Description rdf:about="#R_MAR04819">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.5.1.6"/>
@@ -144932,20 +144972,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00922c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00922c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01596c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01633c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02578c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01596c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01633c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02578c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="pyd3"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05299" sboTerm="SBO:0000176" id="MAR05299" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05299" sboTerm="SBO:0000176" id="R_MAR05299" name="ATP:uridine 5&apos;-phosphotransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -144954,7 +144994,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05299">
+            <rdf:Description rdf:about="#R_MAR05299">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.1.48"/>
@@ -144970,13 +145010,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03123c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03123c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03114c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03114c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -144985,7 +145025,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05352" sboTerm="SBO:0000176" id="MAR05352" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05352" sboTerm="SBO:0000176" id="R_MAR05352" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -144994,7 +145034,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05352">
+            <rdf:Description rdf:about="#R_MAR05352">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.1.48"/>
@@ -145007,13 +145047,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01756c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03123c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01756c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03123c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01754c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03114c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01754c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03114c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -145022,7 +145062,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05415" sboTerm="SBO:0000176" id="MAR05415" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05415" sboTerm="SBO:0000176" id="R_MAR05415" name="2&apos;-deoxyadenosine 5&apos;-diphosphate:oxidized-thioredoxin 2&apos;-oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -145031,7 +145071,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05415">
+            <rdf:Description rdf:about="#R_MAR05415">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.17.4.1"/>
@@ -145043,13 +145083,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01637m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02486m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01637m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02486m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02487m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02487m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -145061,7 +145101,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05416" sboTerm="SBO:0000176" id="MAR05416" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05416" sboTerm="SBO:0000176" id="R_MAR05416" name="2&apos;-deoxyguanosine 5&apos;-diphosphate:oxidized-thioredoxin 2&apos;-oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -145070,7 +145110,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05416">
+            <rdf:Description rdf:about="#R_MAR05416">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.17.4.1"/>
@@ -145082,13 +145122,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01680m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02486m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01680m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02486m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01948m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02487m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01948m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02487m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -145100,7 +145140,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05417" sboTerm="SBO:0000176" id="MAR05417" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05417" sboTerm="SBO:0000176" id="R_MAR05417" name="NADPH:oxidized-thioredoxin oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -145109,7 +145149,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05417">
+            <rdf:Description rdf:about="#R_MAR05417">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.8.1.9"/>
@@ -145122,16 +145162,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02486m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02486m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02487m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02487m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR06612" sboTerm="SBO:0000176" id="MAR06612" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06612" sboTerm="SBO:0000176" id="R_MAR06612" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -145140,7 +145180,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06612">
+            <rdf:Description rdf:about="#R_MAR06612">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.4.9"/>
@@ -145152,18 +145192,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01637m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01747m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01637m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01747m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01642m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01752m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01642m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01752m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG5757"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06613" sboTerm="SBO:0000176" id="MAR06613" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06613" sboTerm="SBO:0000176" id="R_MAR06613" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -145172,7 +145212,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06613">
+            <rdf:Description rdf:about="#R_MAR06613">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.4.9"/>
@@ -145184,18 +145224,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01637n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01747n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01637n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01747n" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01642n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01752n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01642n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01752n" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG5757"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06621" sboTerm="SBO:0000176" id="MAR06621" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06621" sboTerm="SBO:0000176" id="R_MAR06621" name="2&apos;-deoxyuridine 5&apos;-triphosphate:oxydized-thioredoxin 2&apos;-oxidoreductase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -145204,7 +145244,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06621">
+            <rdf:Description rdf:about="#R_MAR06621">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.17.4.1"/>
@@ -145215,13 +145255,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01756m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02666m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01756m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02666m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02990m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03130m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02990m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03130m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -145233,7 +145273,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06622" sboTerm="SBO:0000176" id="MAR06622" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06622" sboTerm="SBO:0000176" id="R_MAR06622" name="2&apos;-deoxyuridine 5&apos;-triphosphate:oxydized-thioredoxin 2&apos;-oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -145242,7 +145282,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06622">
+            <rdf:Description rdf:about="#R_MAR06622">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.17.4.1"/>
@@ -145254,13 +145294,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02990n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03130n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02990n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03130n" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01756n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02666n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01756n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02666n" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -145272,7 +145312,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06624" sboTerm="SBO:0000176" id="MAR06624" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06624" sboTerm="SBO:0000176" id="R_MAR06624" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -145281,7 +145321,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06624">
+            <rdf:Description rdf:about="#R_MAR06624">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.1.21"/>
@@ -145293,19 +145333,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01673m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01688m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01673m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01688m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01680m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01755m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01680m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01755m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="dnk"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06627" sboTerm="SBO:0000176" id="MAR06627" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06627" sboTerm="SBO:0000176" id="R_MAR06627" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -145314,7 +145354,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06627">
+            <rdf:Description rdf:about="#R_MAR06627">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.1.40"/>
@@ -145325,19 +145365,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01747c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02696c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01747c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02696c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01753c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02819c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01753c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02819c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="PyK"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08072" sboTerm="SBO:0000176" id="MAR08072" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08072" sboTerm="SBO:0000176" id="R_MAR08072" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -145345,7 +145385,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08072">
+            <rdf:Description rdf:about="#R_MAR08072">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/2DR1PP"/>
@@ -145357,15 +145397,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00639c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00639c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01672c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01672c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08637" sboTerm="SBO:0000176" id="MAR08637" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08637" sboTerm="SBO:0000176" id="R_MAR08637" name="Cytosine aminohydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -145373,7 +145413,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08637">
+            <rdf:Description rdf:about="#R_MAR08637">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CSNt"/>
@@ -145386,15 +145426,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01632c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01632c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02578c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03118c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02578c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03118c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03965" sboTerm="SBO:0000176" id="MAR03965" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03965" sboTerm="SBO:0000176" id="R_MAR03965" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -145402,7 +145442,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03965">
+            <rdf:Description rdf:about="#R_MAR03965">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.6.1.23"/>
@@ -145417,19 +145457,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01754c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01754c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01755c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01755c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="dUTPase"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03966" sboTerm="SBO:0000176" id="MAR03966" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03966" sboTerm="SBO:0000176" id="R_MAR03966" name="ATP diphosphohydrolase (diphosphate-forming)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -145437,7 +145477,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03966">
+            <rdf:Description rdf:about="#R_MAR03966">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.6.1.19"/>
@@ -145452,19 +145492,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01334m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG8891"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03967" sboTerm="SBO:0000176" id="MAR03967" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03967" sboTerm="SBO:0000176" id="R_MAR03967" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -145472,7 +145512,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03967">
+            <rdf:Description rdf:about="#R_MAR03967">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.4.14"/>
@@ -145485,18 +145525,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01424c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01948c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01424c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01948c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01590c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02034c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01590c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02034c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Cmpk"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03968" sboTerm="SBO:0000176" id="MAR03968" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03968" sboTerm="SBO:0000176" id="R_MAR03968" name="ATP:dUMP phosphotransferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -145504,7 +145544,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03968">
+            <rdf:Description rdf:about="#R_MAR03968">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.4.9"/>
@@ -145520,18 +145560,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01754c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01754c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01755c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01755c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG5757"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04024" sboTerm="SBO:0000176" id="MAR04024" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04024" sboTerm="SBO:0000176" id="R_MAR04024" name="ATP:CMP phosphotransferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -145540,7 +145580,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04024">
+            <rdf:Description rdf:about="#R_MAR04024">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.4.14"/>
@@ -145557,18 +145597,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01424c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01424c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01590c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01590c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Cmpk"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04083" sboTerm="SBO:0000176" id="MAR04083" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04083" sboTerm="SBO:0000176" id="R_MAR04083" name="ATP:adenosine 5&apos;-phosphotransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -145576,7 +145616,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04083">
+            <rdf:Description rdf:about="#R_MAR04083">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ADNK1m"/>
@@ -145591,19 +145631,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01280m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01280m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01334m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Adk2"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04136" sboTerm="SBO:0000176" id="MAR04136" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04136" sboTerm="SBO:0000176" id="R_MAR04136" name="GTP phosphohydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -145612,7 +145652,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04136">
+            <rdf:Description rdf:about="#R_MAR04136">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.6.5.1"/>
@@ -145633,16 +145673,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02034e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02034e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01948e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01948e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR04180" sboTerm="SBO:0000176" id="MAR04180" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04180" sboTerm="SBO:0000176" id="R_MAR04180" name="ATP:cytidine 5&apos;-phosphotransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -145651,7 +145691,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04180">
+            <rdf:Description rdf:about="#R_MAR04180">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.1.48"/>
@@ -145667,13 +145707,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01590c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01590c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -145682,7 +145722,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04185" sboTerm="SBO:0000176" id="MAR04185" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04185" sboTerm="SBO:0000176" id="R_MAR04185" name="ATP:sulfate adenylyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -145691,7 +145731,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04185">
+            <rdf:Description rdf:about="#R_MAR04185">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.7.4"/>
@@ -145705,19 +145745,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02946c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02946c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01283c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01283c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Papss"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04186" sboTerm="SBO:0000176" id="MAR04186" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04186" sboTerm="SBO:0000176" id="R_MAR04186" name="ATP:adenylylsulfate 3&apos;-phosphotransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -145726,7 +145766,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04186">
+            <rdf:Description rdf:about="#R_MAR04186">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.1.25"/>
@@ -145740,19 +145780,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01283c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01283c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02682c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02682c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Papss"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04342" sboTerm="SBO:0000176" id="MAR04342" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04342" sboTerm="SBO:0000176" id="R_MAR04342" name="IDP phosphohydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -145761,7 +145801,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04342">
+            <rdf:Description rdf:about="#R_MAR04342">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.6.1.5"/>
@@ -145778,13 +145818,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02161e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02161e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02167e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02167e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -145793,7 +145833,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04344" sboTerm="SBO:0000176" id="MAR04344" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04344" sboTerm="SBO:0000176" id="R_MAR04344" name="5,6-dihydrouracil:NAD+ oxidoreductase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -145802,7 +145842,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04344">
+            <rdf:Description rdf:about="#R_MAR04344">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.1.1"/>
@@ -145817,16 +145857,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01052c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01052c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03118c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03118c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR04483" sboTerm="SBO:0000176" id="MAR04483" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04483" sboTerm="SBO:0000176" id="R_MAR04483" name="ATP:thymidine 5&apos;-phosphotransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -145835,7 +145875,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04483">
+            <rdf:Description rdf:about="#R_MAR04483">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.1.21"/>
@@ -145851,19 +145891,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02996m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02996m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01752m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01752m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="dnk"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04507" sboTerm="SBO:0000176" id="MAR04507" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04507" sboTerm="SBO:0000176" id="R_MAR04507" name="dCMP aminohydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -145872,7 +145912,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04507">
+            <rdf:Description rdf:about="#R_MAR04507">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.5.4.12"/>
@@ -145888,18 +145928,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01644c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01644c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01755c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02578c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01755c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02578c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG6951"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04640" sboTerm="SBO:0000176" id="MAR04640" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04640" sboTerm="SBO:0000176" id="R_MAR04640" name="ATP:dUMP phosphotransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -145908,7 +145948,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04640">
+            <rdf:Description rdf:about="#R_MAR04640">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.4.4"/>
@@ -145925,18 +145965,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01755m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01755m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01754m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01754m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG5757"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04680" sboTerm="SBO:0000176" id="MAR04680" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04680" sboTerm="SBO:0000176" id="R_MAR04680" name="deoxyuridine:orthophosphate 2-deoxy-D-ribosyltransferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -145945,7 +145985,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04680">
+            <rdf:Description rdf:about="#R_MAR04680">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.2.3"/>
@@ -145959,18 +145999,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00639c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03118c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00639c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03118c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01673c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01673c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG6330"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04806" sboTerm="SBO:0000176" id="MAR04806" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04806" sboTerm="SBO:0000176" id="R_MAR04806" name="10-formyltetrahydrofolate:5&apos;-phosphoribosylglycinamide formyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -145979,7 +146019,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04806">
+            <rdf:Description rdf:about="#R_MAR04806">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.1.2.2"/>
@@ -145993,19 +146033,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00266c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01940c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00266c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01940c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02575c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02980c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02575c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02980c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Gart"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05394" sboTerm="SBO:0000176" id="MAR05394" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05394" sboTerm="SBO:0000176" id="R_MAR05394" name="Guanosine aminohydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -146014,7 +146054,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05394">
+            <rdf:Description rdf:about="#R_MAR05394">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.5.4.15"/>
@@ -146027,15 +146067,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02038c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02038c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02578c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03149c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02578c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03149c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR06625" sboTerm="SBO:0000176" id="MAR06625" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06625" sboTerm="SBO:0000176" id="R_MAR06625" name="ATP:deoxyuridine 5&apos;-phosphotransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -146043,7 +146083,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06625">
+            <rdf:Description rdf:about="#R_MAR06625">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.1.21"/>
@@ -146057,19 +146097,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01673m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01673m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01755m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01755m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="dnk"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07160" sboTerm="SBO:0000176" id="MAR07160" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07160" sboTerm="SBO:0000176" id="R_MAR07160" name="Deoxynucleoside triphosphate:DNA deoxynucleotidyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -146077,7 +146117,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07160">
+            <rdf:Description rdf:about="#R_MAR07160">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.7.7"/>
@@ -146089,17 +146129,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01642c" stoichiometry="0.3" constant="true"/>
-          <speciesReference species="MAM01645c" stoichiometry="0.2" constant="true"/>
-          <speciesReference species="MAM01688c" stoichiometry="0.2" constant="true"/>
-          <speciesReference species="MAM01753c" stoichiometry="0.3" constant="true"/>
+          <speciesReference species="M_MAM01642n" stoichiometry="0.3" constant="true"/>
+          <speciesReference species="M_MAM01645n" stoichiometry="0.2" constant="true"/>
+          <speciesReference species="M_MAM01688n" stoichiometry="0.2" constant="true"/>
+          <speciesReference species="M_MAM01753n" stoichiometry="0.3" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01721c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01721n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759n" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07161" sboTerm="SBO:0000176" id="MAR07161" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07161" sboTerm="SBO:0000176" id="R_MAR07161" name="nucleoside-triphosphate:RNA nucleotidyltransferase (DNA-directed)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -146107,7 +146147,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07161">
+            <rdf:Description rdf:about="#R_MAR07161">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.7.6"/>
@@ -146121,17 +146161,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="0.18" constant="true"/>
-          <speciesReference species="MAM01623c" stoichiometry="0.3" constant="true"/>
-          <speciesReference species="MAM02034c" stoichiometry="0.34" constant="true"/>
-          <speciesReference species="MAM03130c" stoichiometry="0.18" constant="true"/>
+          <speciesReference species="M_MAM01371n" stoichiometry="0.18" constant="true"/>
+          <speciesReference species="M_MAM01623n" stoichiometry="0.3" constant="true"/>
+          <speciesReference species="M_MAM02034n" stoichiometry="0.34" constant="true"/>
+          <speciesReference species="M_MAM03130n" stoichiometry="0.18" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02759c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02847c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02847n" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07162" sboTerm="SBO:0000176" id="MAR07162" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07162" sboTerm="SBO:0000176" id="R_MAR07162" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -146139,7 +146179,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07162">
+            <rdf:Description rdf:about="#R_MAR07162">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.7.8"/>
@@ -146150,17 +146190,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01285c" stoichiometry="0.18" constant="true"/>
-          <speciesReference species="MAM01424c" stoichiometry="0.3" constant="true"/>
-          <speciesReference species="MAM01948c" stoichiometry="0.34" constant="true"/>
-          <speciesReference species="MAM03106c" stoichiometry="0.18" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02847c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02847c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="0.18" constant="true"/>
+          <speciesReference species="M_MAM01424c" stoichiometry="0.3" constant="true"/>
+          <speciesReference species="M_MAM01948c" stoichiometry="0.34" constant="true"/>
+          <speciesReference species="M_MAM03106c" stoichiometry="0.18" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07163" sboTerm="SBO:0000176" id="MAR07163" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07163" sboTerm="SBO:0000176" id="R_MAR07163" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -146168,7 +146208,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07163">
+            <rdf:Description rdf:about="#R_MAR07163">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.11.2"/>
@@ -146179,15 +146219,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01721c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01721n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040n" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01639c" stoichiometry="0.3" constant="true"/>
-          <speciesReference species="MAM01644c" stoichiometry="0.2" constant="true"/>
-          <speciesReference species="MAM01686c" stoichiometry="0.2" constant="true"/>
-          <speciesReference species="MAM01752c" stoichiometry="0.3" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01639n" stoichiometry="0.3" constant="true"/>
+          <speciesReference species="M_MAM01644n" stoichiometry="0.2" constant="true"/>
+          <speciesReference species="M_MAM01686n" stoichiometry="0.2" constant="true"/>
+          <speciesReference species="M_MAM01752n" stoichiometry="0.3" constant="true"/>
+          <speciesReference species="M_MAM02039n" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -146200,7 +146240,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07164" sboTerm="SBO:0000176" id="MAR07164" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07164" sboTerm="SBO:0000176" id="R_MAR07164" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -146208,7 +146248,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07164">
+            <rdf:Description rdf:about="#R_MAR07164">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.11.2"/>
@@ -146219,15 +146259,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02847c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02847c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01334c" stoichiometry="0.18" constant="true"/>
-          <speciesReference species="MAM01590c" stoichiometry="0.3" constant="true"/>
-          <speciesReference species="MAM02016c" stoichiometry="0.34" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03114c" stoichiometry="0.18" constant="true"/>
+          <speciesReference species="M_MAM01334c" stoichiometry="0.18" constant="true"/>
+          <speciesReference species="M_MAM01590c" stoichiometry="0.3" constant="true"/>
+          <speciesReference species="M_MAM02016c" stoichiometry="0.34" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03114c" stoichiometry="0.18" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -146240,7 +146280,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07713" sboTerm="SBO:0000176" id="MAR07713" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07713" sboTerm="SBO:0000176" id="R_MAR07713" name="adenosine 5&apos;-monophosphate phosphohydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -146248,7 +146288,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07713">
+            <rdf:Description rdf:about="#R_MAR07713">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.3.5"/>
@@ -146264,12 +146304,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01334l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01280l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01280l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -146277,7 +146317,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07716" sboTerm="SBO:0000176" id="MAR07716" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07716" sboTerm="SBO:0000176" id="R_MAR07716" name="uridine 5&apos;-monophosphate phosphohydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -146285,7 +146325,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07716">
+            <rdf:Description rdf:about="#R_MAR07716">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.3.5"/>
@@ -146301,12 +146341,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03114l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03114l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02751l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03123l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03123l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -146314,7 +146354,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07717" sboTerm="SBO:0000176" id="MAR07717" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07717" sboTerm="SBO:0000176" id="R_MAR07717" name="uridine 5&apos;-monophosphate phosphohydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -146322,7 +146362,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07717">
+            <rdf:Description rdf:about="#R_MAR07717">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/NTD2m"/>
@@ -146337,12 +146377,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03114m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03114m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02751m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03123m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03123m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -146350,7 +146390,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07721" sboTerm="SBO:0000176" id="MAR07721" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07721" sboTerm="SBO:0000176" id="R_MAR07721" name="cytidine-5&apos;-monophosphate phosphohydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -146358,7 +146398,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07721">
+            <rdf:Description rdf:about="#R_MAR07721">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.3.5"/>
@@ -146374,12 +146414,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01590l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01590l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01630l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01630l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -146387,7 +146427,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07725" sboTerm="SBO:0000176" id="MAR07725" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07725" sboTerm="SBO:0000176" id="R_MAR07725" name="thymidylate 5&apos;-phosphohydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -146395,7 +146435,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07725">
+            <rdf:Description rdf:about="#R_MAR07725">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.3.-"/>
@@ -146411,12 +146451,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01752l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01752l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02751l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02996l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02996l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -146424,7 +146464,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07728" sboTerm="SBO:0000176" id="MAR07728" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07728" sboTerm="SBO:0000176" id="R_MAR07728" name="guanosine 5&apos;-monophosphate phosphohydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -146432,7 +146472,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07728">
+            <rdf:Description rdf:about="#R_MAR07728">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.3.5"/>
@@ -146448,12 +146488,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02016l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02016l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02038l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02038l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -146461,7 +146501,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07800" sboTerm="SBO:0000176" id="MAR07800" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07800" sboTerm="SBO:0000176" id="R_MAR07800" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -146469,7 +146509,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07800">
+            <rdf:Description rdf:about="#R_MAR07800">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.4.3"/>
@@ -146484,18 +146524,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01948c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01948c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01334c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02034c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02034c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG9541"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07801" sboTerm="SBO:0000176" id="MAR07801" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07801" sboTerm="SBO:0000176" id="R_MAR07801" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -146503,7 +146543,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07801">
+            <rdf:Description rdf:about="#R_MAR07801">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.4.10"/>
@@ -146518,18 +146558,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01285m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01948m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01948m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01334m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02034m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02034m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Ak3"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07802" sboTerm="SBO:0000176" id="MAR07802" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07802" sboTerm="SBO:0000176" id="R_MAR07802" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -146537,7 +146577,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07802">
+            <rdf:Description rdf:about="#R_MAR07802">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.4.3"/>
@@ -146550,17 +146590,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01637c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01637c" stoichiometry="2" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01639c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01642c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01639c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01642c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG9541"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07863" sboTerm="SBO:0000176" id="MAR07863" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07863" sboTerm="SBO:0000176" id="R_MAR07863" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -146568,7 +146608,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07863">
+            <rdf:Description rdf:about="#R_MAR07863">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.4.14"/>
@@ -146581,18 +146621,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01424c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01424c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01623c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03114c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01623c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03114c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Cmpk"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07864" sboTerm="SBO:0000176" id="MAR07864" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07864" sboTerm="SBO:0000176" id="R_MAR07864" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -146600,7 +146640,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07864">
+            <rdf:Description rdf:about="#R_MAR07864">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.4.14"/>
@@ -146613,18 +146653,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01424n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01424n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106n" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01623n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03114n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01623n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03114n" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Cmpk"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07865" sboTerm="SBO:0000176" id="MAR07865" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07865" sboTerm="SBO:0000176" id="R_MAR07865" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -146632,7 +146672,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07865">
+            <rdf:Description rdf:about="#R_MAR07865">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.4.14"/>
@@ -146645,17 +146685,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03106c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03106c" stoichiometry="2" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03114c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03130c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03114c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03130c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Cmpk"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07866" sboTerm="SBO:0000176" id="MAR07866" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07866" sboTerm="SBO:0000176" id="R_MAR07866" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -146663,7 +146703,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07866">
+            <rdf:Description rdf:about="#R_MAR07866">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.4.14"/>
@@ -146676,17 +146716,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03106n" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03106n" stoichiometry="2" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03114n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03130n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03114n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03130n" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Cmpk"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07867" sboTerm="SBO:0000176" id="MAR07867" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07867" sboTerm="SBO:0000176" id="R_MAR07867" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -146694,7 +146734,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07867">
+            <rdf:Description rdf:about="#R_MAR07867">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.4.14"/>
@@ -146707,18 +146747,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01948c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01948c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02034c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03114c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02034c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03114c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Cmpk"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07868" sboTerm="SBO:0000176" id="MAR07868" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07868" sboTerm="SBO:0000176" id="R_MAR07868" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -146726,7 +146766,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07868">
+            <rdf:Description rdf:about="#R_MAR07868">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.4.14"/>
@@ -146739,18 +146779,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01948n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01948n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106n" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02034n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03114n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02034n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03114n" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Cmpk"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07869" sboTerm="SBO:0000176" id="MAR07869" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07869" sboTerm="SBO:0000176" id="R_MAR07869" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -146758,7 +146798,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07869">
+            <rdf:Description rdf:about="#R_MAR07869">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.4.14"/>
@@ -146771,18 +146811,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01637c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01637c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01642c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03114c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01642c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03114c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Cmpk"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07870" sboTerm="SBO:0000176" id="MAR07870" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07870" sboTerm="SBO:0000176" id="R_MAR07870" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -146790,7 +146830,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07870">
+            <rdf:Description rdf:about="#R_MAR07870">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.4.14"/>
@@ -146803,18 +146843,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01637n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01637n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106n" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01642n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03114n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01642n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03114n" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Cmpk"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07871" sboTerm="SBO:0000176" id="MAR07871" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07871" sboTerm="SBO:0000176" id="R_MAR07871" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -146822,7 +146862,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07871">
+            <rdf:Description rdf:about="#R_MAR07871">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.4.14"/>
@@ -146835,18 +146875,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01643c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01643c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01645c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03114c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01645c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03114c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Cmpk"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07872" sboTerm="SBO:0000176" id="MAR07872" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07872" sboTerm="SBO:0000176" id="R_MAR07872" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -146854,7 +146894,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07872">
+            <rdf:Description rdf:about="#R_MAR07872">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.4.14"/>
@@ -146867,18 +146907,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01643n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01643n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106n" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01645n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03114n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01645n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03114n" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Cmpk"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07873" sboTerm="SBO:0000176" id="MAR07873" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07873" sboTerm="SBO:0000176" id="R_MAR07873" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -146886,7 +146926,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07873">
+            <rdf:Description rdf:about="#R_MAR07873">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.4.14"/>
@@ -146899,18 +146939,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01680c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01680c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01688c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03114c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01688c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03114c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Cmpk"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07874" sboTerm="SBO:0000176" id="MAR07874" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07874" sboTerm="SBO:0000176" id="R_MAR07874" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -146918,7 +146958,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07874">
+            <rdf:Description rdf:about="#R_MAR07874">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.4.14"/>
@@ -146931,18 +146971,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01680n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01680n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106n" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01688n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03114n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01688n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03114n" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Cmpk"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07876" sboTerm="SBO:0000176" id="MAR07876" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07876" sboTerm="SBO:0000176" id="R_MAR07876" name="ATP:UMP phosphotransferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -146950,7 +146990,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07876">
+            <rdf:Description rdf:about="#R_MAR07876">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.4.14"/>
@@ -146966,18 +147006,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01285n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106n" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01371n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03114n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03114n" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Cmpk"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07878" sboTerm="SBO:0000176" id="MAR07878" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07878" sboTerm="SBO:0000176" id="R_MAR07878" name="ATP:dIDP phosphotransferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -146985,7 +147025,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07878">
+            <rdf:Description rdf:about="#R_MAR07878">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.4.6"/>
@@ -147001,15 +147041,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01714c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01714c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01693c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01693c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07879" sboTerm="SBO:0000176" id="MAR07879" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07879" sboTerm="SBO:0000176" id="R_MAR07879" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -147017,7 +147057,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07879">
+            <rdf:Description rdf:about="#R_MAR07879">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.6.1.19"/>
@@ -147032,19 +147072,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01714c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01714c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01709c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01709c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG8891"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07881" sboTerm="SBO:0000176" id="MAR07881" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07881" sboTerm="SBO:0000176" id="R_MAR07881" name="ATP:dIDP phosphotransferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -147052,7 +147092,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07881">
+            <rdf:Description rdf:about="#R_MAR07881">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.4.6"/>
@@ -147068,18 +147108,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01285n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01714n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01714n" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01371n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01693n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01693n" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="awd"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07882" sboTerm="SBO:0000176" id="MAR07882" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07882" sboTerm="SBO:0000176" id="R_MAR07882" name="ATP:GDP phosphotransferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -147087,7 +147127,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07882">
+            <rdf:Description rdf:about="#R_MAR07882">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.4.6"/>
@@ -147103,18 +147143,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01285n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02034n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02034n" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01371n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01948n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01948n" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="awd"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07883" sboTerm="SBO:0000176" id="MAR07883" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07883" sboTerm="SBO:0000176" id="R_MAR07883" name="ATP:UDP phosphotransferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -147122,7 +147162,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07883">
+            <rdf:Description rdf:about="#R_MAR07883">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.4.6"/>
@@ -147138,15 +147178,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01285m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03130m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03130m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01371m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07884" sboTerm="SBO:0000176" id="MAR07884" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07884" sboTerm="SBO:0000176" id="R_MAR07884" name="ATP:UDP phosphotransferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -147154,7 +147194,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07884">
+            <rdf:Description rdf:about="#R_MAR07884">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.4.6"/>
@@ -147170,18 +147210,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01285n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03130n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03130n" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01371n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106n" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="awd"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07885" sboTerm="SBO:0000176" id="MAR07885" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07885" sboTerm="SBO:0000176" id="R_MAR07885" name="ATP:CDP phosphotransferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -147189,7 +147229,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07885">
+            <rdf:Description rdf:about="#R_MAR07885">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.4.6"/>
@@ -147205,18 +147245,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01285n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01623n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01623n" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01371n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01424n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01424n" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="awd"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07886" sboTerm="SBO:0000176" id="MAR07886" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07886" sboTerm="SBO:0000176" id="R_MAR07886" name="ATP:dTDP phosphotransferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -147224,7 +147264,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07886">
+            <rdf:Description rdf:about="#R_MAR07886">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.4.6"/>
@@ -147240,15 +147280,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01285m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01753m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01753m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01371m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01747m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01747m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07887" sboTerm="SBO:0000176" id="MAR07887" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07887" sboTerm="SBO:0000176" id="R_MAR07887" name="ATP:dTDP phosphotransferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -147256,7 +147296,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07887">
+            <rdf:Description rdf:about="#R_MAR07887">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.4.6"/>
@@ -147272,18 +147312,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01285n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01753n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01753n" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01371n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01747n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01747n" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="awd"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07888" sboTerm="SBO:0000176" id="MAR07888" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07888" sboTerm="SBO:0000176" id="R_MAR07888" name="ATP:dGDP phosphotransferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -147291,7 +147331,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07888">
+            <rdf:Description rdf:about="#R_MAR07888">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.4.6"/>
@@ -147307,18 +147347,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01285n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01688n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01688n" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01371n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01680n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01680n" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="awd"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07889" sboTerm="SBO:0000176" id="MAR07889" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07889" sboTerm="SBO:0000176" id="R_MAR07889" name="ATP:dUDP phosphotransferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -147326,7 +147366,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07889">
+            <rdf:Description rdf:about="#R_MAR07889">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.4.6"/>
@@ -147342,18 +147382,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01285n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01756n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01756n" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01371n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01754n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01754n" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="awd"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07890" sboTerm="SBO:0000176" id="MAR07890" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07890" sboTerm="SBO:0000176" id="R_MAR07890" name="ATP:dCDP phosphotransferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -147361,7 +147401,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07890">
+            <rdf:Description rdf:about="#R_MAR07890">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.4.6"/>
@@ -147377,15 +147417,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01285m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01645m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01645m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01371m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01643m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01643m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07891" sboTerm="SBO:0000176" id="MAR07891" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07891" sboTerm="SBO:0000176" id="R_MAR07891" name="ATP:dCDP phosphotransferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -147393,7 +147433,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07891">
+            <rdf:Description rdf:about="#R_MAR07891">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.4.6"/>
@@ -147409,18 +147449,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01285n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01645n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01645n" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01371n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01643n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01643n" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="awd"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07892" sboTerm="SBO:0000176" id="MAR07892" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07892" sboTerm="SBO:0000176" id="R_MAR07892" name="ATP:dADP phosphotransferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -147428,7 +147468,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07892">
+            <rdf:Description rdf:about="#R_MAR07892">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.4.6"/>
@@ -147444,18 +147484,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01285n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01642n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01642n" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01371n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01637n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01637n" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="awd"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07893" sboTerm="SBO:0000176" id="MAR07893" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07893" sboTerm="SBO:0000176" id="R_MAR07893" name="ATP:IDP phosphotransferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -147463,7 +147503,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07893">
+            <rdf:Description rdf:about="#R_MAR07893">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.4.6"/>
@@ -147479,18 +147519,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01285n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02193n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02193n" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01371n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02161n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02161n" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="awd"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07894" sboTerm="SBO:0000176" id="MAR07894" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07894" sboTerm="SBO:0000176" id="R_MAR07894" name="ATP:dIDP phosphotransferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -147498,7 +147538,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07894">
+            <rdf:Description rdf:about="#R_MAR07894">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.4.6"/>
@@ -147514,15 +147554,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01285m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01714m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01714m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01371m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01693m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01693m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07895" sboTerm="SBO:0000176" id="MAR07895" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07895" sboTerm="SBO:0000176" id="R_MAR07895" name="ATP:IDP phosphotransferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -147530,7 +147570,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07895">
+            <rdf:Description rdf:about="#R_MAR07895">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.4.6"/>
@@ -147546,15 +147586,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01285m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02193m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02193m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01371m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02161m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02161m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08083" sboTerm="SBO:0000176" id="MAR08083" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08083" sboTerm="SBO:0000176" id="R_MAR08083" name="Guanosine 3&apos;,5&apos;-cyclic phosphate 5&apos;-nucleotidohydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -147562,7 +147602,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08083">
+            <rdf:Description rdf:about="#R_MAR08083">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.4.35"/>
@@ -147576,12 +147616,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01433n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01433n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040n" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02016n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02016n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039n" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -147595,7 +147635,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08085" sboTerm="SBO:0000176" id="MAR08085" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08085" sboTerm="SBO:0000176" id="R_MAR08085" name="Guanosine 3&apos;,5&apos;-cyclic phosphate 5&apos;-nucleotidohydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -147603,7 +147643,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08085">
+            <rdf:Description rdf:about="#R_MAR08085">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.4.17"/>
@@ -147617,12 +147657,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01433g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01433g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02016g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02016g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039g" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -147636,7 +147676,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08087" sboTerm="SBO:0000176" id="MAR08087" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08087" sboTerm="SBO:0000176" id="R_MAR08087" name="adenosine 3&apos;,5&apos;-phosphate 5&apos;-nucleotidohydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -147644,7 +147684,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08087">
+            <rdf:Description rdf:about="#R_MAR08087">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.4.17"/>
@@ -147658,12 +147698,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01419g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01419g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01334g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039g" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -147677,7 +147717,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08443" sboTerm="SBO:0000176" id="MAR08443" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08443" sboTerm="SBO:0000176" id="R_MAR08443" name="ADP-glucose glucose-1-phosphohydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -147685,7 +147725,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08443">
+            <rdf:Description rdf:about="#R_MAR08443">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.6.1.13"/>
@@ -147699,19 +147739,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01286c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01286c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01334c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01967c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01334c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01967c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="2" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG4098"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08444" sboTerm="SBO:0000176" id="MAR08444" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08444" sboTerm="SBO:0000176" id="R_MAR08444" name="ADPmannose sugarphosphohydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -147719,7 +147759,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08444">
+            <rdf:Description rdf:about="#R_MAR08444">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.6.1.13"/>
@@ -147733,19 +147773,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01287c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01287c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01334c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02454c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02454c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG4098"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08445" sboTerm="SBO:0000176" id="MAR08445" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08445" sboTerm="SBO:0000176" id="R_MAR08445" name="ATP:cytidine 5&apos;-phosphotransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -147753,7 +147793,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08445">
+            <rdf:Description rdf:about="#R_MAR08445">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CYTDn"/>
@@ -147768,13 +147808,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01630m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01630m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01590m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01590m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -147783,7 +147823,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08448" sboTerm="SBO:0000176" id="MAR08448" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08448" sboTerm="SBO:0000176" id="R_MAR08448" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -147791,7 +147831,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08448">
+            <rdf:Description rdf:about="#R_MAR08448">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.4.14"/>
@@ -147804,18 +147844,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01424c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01680c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01424c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01680c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01590c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01688c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01590c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01688c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Cmpk"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08449" sboTerm="SBO:0000176" id="MAR08449" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08449" sboTerm="SBO:0000176" id="R_MAR08449" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -147823,7 +147863,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08449">
+            <rdf:Description rdf:about="#R_MAR08449">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.4.14"/>
@@ -147836,18 +147876,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01424n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01680n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01424n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01680n" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01590n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01688n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01590n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01688n" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Cmpk"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08450" sboTerm="SBO:0000176" id="MAR08450" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08450" sboTerm="SBO:0000176" id="R_MAR08450" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -147855,7 +147895,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08450">
+            <rdf:Description rdf:about="#R_MAR08450">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.4.14"/>
@@ -147868,18 +147908,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01643c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01680c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01643c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01680c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01644c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01688c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01644c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01688c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Cmpk"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08451" sboTerm="SBO:0000176" id="MAR08451" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08451" sboTerm="SBO:0000176" id="R_MAR08451" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -147887,7 +147927,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08451">
+            <rdf:Description rdf:about="#R_MAR08451">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.4.14"/>
@@ -147900,18 +147940,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01643n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01680n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01643n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01680n" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01644n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01688n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01644n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01688n" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Cmpk"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08452" sboTerm="SBO:0000176" id="MAR08452" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08452" sboTerm="SBO:0000176" id="R_MAR08452" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -147919,7 +147959,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08452">
+            <rdf:Description rdf:about="#R_MAR08452">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.4.14"/>
@@ -147932,17 +147972,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01643c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01643c" stoichiometry="2" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01644c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01645c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01644c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01645c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Cmpk"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08453" sboTerm="SBO:0000176" id="MAR08453" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08453" sboTerm="SBO:0000176" id="R_MAR08453" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -147950,7 +147990,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08453">
+            <rdf:Description rdf:about="#R_MAR08453">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.4.14"/>
@@ -147963,17 +148003,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01643n" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01643n" stoichiometry="2" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01644n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01645n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01644n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01645n" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Cmpk"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08454" sboTerm="SBO:0000176" id="MAR08454" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08454" sboTerm="SBO:0000176" id="R_MAR08454" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -147981,7 +148021,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08454">
+            <rdf:Description rdf:about="#R_MAR08454">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.4.14"/>
@@ -147994,18 +148034,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01637c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01643c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01637c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01643c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01642c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01644c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01642c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01644c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Cmpk"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08455" sboTerm="SBO:0000176" id="MAR08455" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08455" sboTerm="SBO:0000176" id="R_MAR08455" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -148013,7 +148053,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08455">
+            <rdf:Description rdf:about="#R_MAR08455">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.4.14"/>
@@ -148026,18 +148066,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01637n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01643n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01637n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01643n" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01642n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01644n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01642n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01644n" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Cmpk"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08456" sboTerm="SBO:0000176" id="MAR08456" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08456" sboTerm="SBO:0000176" id="R_MAR08456" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -148045,7 +148085,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08456">
+            <rdf:Description rdf:about="#R_MAR08456">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.4.14"/>
@@ -148058,18 +148098,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01643c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01643c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01644c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03130c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01644c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03130c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Cmpk"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08457" sboTerm="SBO:0000176" id="MAR08457" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08457" sboTerm="SBO:0000176" id="R_MAR08457" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -148077,7 +148117,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08457">
+            <rdf:Description rdf:about="#R_MAR08457">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.4.14"/>
@@ -148090,18 +148130,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01643n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01643n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106n" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01644n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03130n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01644n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03130n" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Cmpk"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08458" sboTerm="SBO:0000176" id="MAR08458" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08458" sboTerm="SBO:0000176" id="R_MAR08458" name="ATP:CMP phosphotransferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -148109,7 +148149,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08458">
+            <rdf:Description rdf:about="#R_MAR08458">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.4.14"/>
@@ -148125,18 +148165,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01285n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01424n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01424n" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01371n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01590n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01590n" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Cmpk"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08459" sboTerm="SBO:0000176" id="MAR08459" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08459" sboTerm="SBO:0000176" id="R_MAR08459" name="ATP:dCMP phosphotransferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -148144,7 +148184,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08459">
+            <rdf:Description rdf:about="#R_MAR08459">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.4.14"/>
@@ -148160,18 +148200,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01285n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01643n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01643n" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01371n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01644n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01644n" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Cmpk"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08460" sboTerm="SBO:0000176" id="MAR08460" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08460" sboTerm="SBO:0000176" id="R_MAR08460" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -148179,7 +148219,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08460">
+            <rdf:Description rdf:about="#R_MAR08460">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.4.14"/>
@@ -148192,18 +148232,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01424n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01643n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01424n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01643n" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01623n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01644n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01623n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01644n" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Cmpk"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08461" sboTerm="SBO:0000176" id="MAR08461" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08461" sboTerm="SBO:0000176" id="R_MAR08461" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -148211,7 +148251,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08461">
+            <rdf:Description rdf:about="#R_MAR08461">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.4.3"/>
@@ -148224,18 +148264,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01643c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01948c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01643c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01948c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01644c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02034c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01644c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02034c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG9541"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08462" sboTerm="SBO:0000176" id="MAR08462" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08462" sboTerm="SBO:0000176" id="R_MAR08462" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -148243,7 +148283,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08462">
+            <rdf:Description rdf:about="#R_MAR08462">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.4.14"/>
@@ -148256,18 +148296,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01643n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01948n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01643n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01948n" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01644n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02034n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01644n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02034n" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Cmpk"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08463" sboTerm="SBO:0000176" id="MAR08463" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08463" sboTerm="SBO:0000176" id="R_MAR08463" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -148275,7 +148315,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08463">
+            <rdf:Description rdf:about="#R_MAR08463">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.4.14"/>
@@ -148288,18 +148328,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01424c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01643c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01424c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01643c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01623c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01644c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01623c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01644c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Cmpk"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08464" sboTerm="SBO:0000176" id="MAR08464" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08464" sboTerm="SBO:0000176" id="R_MAR08464" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -148307,7 +148347,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08464">
+            <rdf:Description rdf:about="#R_MAR08464">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.4.14"/>
@@ -148320,18 +148360,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01424n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01948n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01424n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01948n" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01590n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02034n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01590n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02034n" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Cmpk"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08465" sboTerm="SBO:0000176" id="MAR08465" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08465" sboTerm="SBO:0000176" id="R_MAR08465" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -148339,7 +148379,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08465">
+            <rdf:Description rdf:about="#R_MAR08465">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.4.14"/>
@@ -148352,17 +148392,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01424c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01424c" stoichiometry="2" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01590c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01623c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01590c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01623c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Cmpk"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08466" sboTerm="SBO:0000176" id="MAR08466" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08466" sboTerm="SBO:0000176" id="R_MAR08466" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -148370,7 +148410,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08466">
+            <rdf:Description rdf:about="#R_MAR08466">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.4.14"/>
@@ -148383,17 +148423,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01424n" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01424n" stoichiometry="2" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01590n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01623n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01590n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01623n" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Cmpk"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08467" sboTerm="SBO:0000176" id="MAR08467" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08467" sboTerm="SBO:0000176" id="R_MAR08467" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -148401,7 +148441,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08467">
+            <rdf:Description rdf:about="#R_MAR08467">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.4.14"/>
@@ -148414,18 +148454,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01424c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01424c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01590c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03130c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01590c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03130c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Cmpk"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08468" sboTerm="SBO:0000176" id="MAR08468" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08468" sboTerm="SBO:0000176" id="R_MAR08468" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -148433,7 +148473,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08468">
+            <rdf:Description rdf:about="#R_MAR08468">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.4.14"/>
@@ -148446,18 +148486,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01424n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01424n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106n" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01590n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03130n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01590n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03130n" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Cmpk"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08469" sboTerm="SBO:0000176" id="MAR08469" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08469" sboTerm="SBO:0000176" id="R_MAR08469" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -148465,7 +148505,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08469">
+            <rdf:Description rdf:about="#R_MAR08469">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.4.14"/>
@@ -148478,18 +148518,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01424c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01637c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01424c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01637c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01590c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01642c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01590c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01642c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Cmpk"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08470" sboTerm="SBO:0000176" id="MAR08470" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08470" sboTerm="SBO:0000176" id="R_MAR08470" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -148497,7 +148537,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08470">
+            <rdf:Description rdf:about="#R_MAR08470">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.4.14"/>
@@ -148510,18 +148550,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01424n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01637n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01424n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01637n" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01590n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01642n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01590n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01642n" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Cmpk"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08471" sboTerm="SBO:0000176" id="MAR08471" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08471" sboTerm="SBO:0000176" id="R_MAR08471" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -148529,7 +148569,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08471">
+            <rdf:Description rdf:about="#R_MAR08471">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.4.14"/>
@@ -148542,18 +148582,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01424c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01643c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01424c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01643c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01590c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01645c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01590c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01645c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Cmpk"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08472" sboTerm="SBO:0000176" id="MAR08472" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08472" sboTerm="SBO:0000176" id="R_MAR08472" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -148561,7 +148601,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08472">
+            <rdf:Description rdf:about="#R_MAR08472">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.4.14"/>
@@ -148573,18 +148613,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01424n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01643n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01424n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01643n" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01590n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01645n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01590n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01645n" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Cmpk"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08474" sboTerm="SBO:0000176" id="MAR08474" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08474" sboTerm="SBO:0000176" id="R_MAR08474" name="ATP diphosphohydrolase (phosphate-forming)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -148592,7 +148632,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08474">
+            <rdf:Description rdf:about="#R_MAR08474">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.6.1.5"/>
@@ -148610,13 +148650,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040e" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01371e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040e" stoichiometry="2" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01334e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039e" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02751e" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01334e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02751e" stoichiometry="2" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -148625,7 +148665,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08481" sboTerm="SBO:0000176" id="MAR08481" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08481" sboTerm="SBO:0000176" id="R_MAR08481" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -148633,7 +148673,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08481">
+            <rdf:Description rdf:about="#R_MAR08481">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/DGSNtm"/>
@@ -148645,15 +148685,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01637m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01680m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01637m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01680m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01642m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01686m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01642m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01686m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08482" sboTerm="SBO:0000176" id="MAR08482" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08482" sboTerm="SBO:0000176" id="R_MAR08482" name="NADPH:oxidized-thioredoxin oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -148661,7 +148701,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08482">
+            <rdf:Description rdf:about="#R_MAR08482">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.8.1.9"/>
@@ -148675,16 +148715,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02666m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02666m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02554m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02990m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02990m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08483" sboTerm="SBO:0000176" id="MAR08483" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08483" sboTerm="SBO:0000176" id="R_MAR08483" name="dUTP nucleotidohydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -148692,7 +148732,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08483">
+            <rdf:Description rdf:about="#R_MAR08483">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.6.1.23"/>
@@ -148708,19 +148748,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01756n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01756n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040n" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01755n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01755n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759n" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="dUTPase"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08484" sboTerm="SBO:0000176" id="MAR08484" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08484" sboTerm="SBO:0000176" id="R_MAR08484" name="ATP:inosine 5&apos;-phosphotransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -148728,7 +148768,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08484">
+            <rdf:Description rdf:about="#R_MAR08484">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/INSKm"/>
@@ -148743,16 +148783,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02170m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02170m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02167m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02167m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08485" sboTerm="SBO:0000176" id="MAR08485" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08485" sboTerm="SBO:0000176" id="R_MAR08485" name="UDP phosphohydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -148760,7 +148800,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08485">
+            <rdf:Description rdf:about="#R_MAR08485">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.6.1.6"/>
@@ -148776,13 +148816,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03114g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03114g" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -148791,7 +148831,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08486" sboTerm="SBO:0000176" id="MAR08486" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08486" sboTerm="SBO:0000176" id="R_MAR08486" name="adenosine:phosphate alpha-D-ribosyltransferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -148799,7 +148839,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08486">
+            <rdf:Description rdf:about="#R_MAR08486">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.2.1"/>
@@ -148813,18 +148853,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01280c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01280c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01279c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02844c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01279c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02844c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG16758"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08487" sboTerm="SBO:0000176" id="MAR08487" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08487" sboTerm="SBO:0000176" id="R_MAR08487" name="uridine 5&apos;-monophosphate phosphohydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -148832,7 +148872,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08487">
+            <rdf:Description rdf:about="#R_MAR08487">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.3.5"/>
@@ -148848,12 +148888,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03114e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03114e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02751e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03123e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03123e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -148861,7 +148901,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08488" sboTerm="SBO:0000176" id="MAR08488" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08488" sboTerm="SBO:0000176" id="R_MAR08488" name="XTP pyrophosphohydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -148869,7 +148909,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08488">
+            <rdf:Description rdf:about="#R_MAR08488">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.6.1.19"/>
@@ -148883,19 +148923,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03154c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03154c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03150c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03150c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG8891"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08489" sboTerm="SBO:0000176" id="MAR08489" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08489" sboTerm="SBO:0000176" id="R_MAR08489" name="Inosine 5&apos;-triphosphate pyrophosphohydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -148903,7 +148943,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08489">
+            <rdf:Description rdf:about="#R_MAR08489">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.6.1.19"/>
@@ -148919,19 +148959,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02193c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02193c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02167c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02167c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG8891"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08493" sboTerm="SBO:0000176" id="MAR08493" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08493" sboTerm="SBO:0000176" id="R_MAR08493" name="2&apos;-deoxycytidine 5&apos;-monophosphate phosphohydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -148939,7 +148979,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08493">
+            <rdf:Description rdf:about="#R_MAR08493">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.3.2"/>
@@ -148953,15 +148993,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01644l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01644l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01668l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01668l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751l" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08494" sboTerm="SBO:0000176" id="MAR08494" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08494" sboTerm="SBO:0000176" id="R_MAR08494" name="2&apos;-deoxyadenosine 5&apos;-monophosphate phosphohydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -148969,7 +149009,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08494">
+            <rdf:Description rdf:about="#R_MAR08494">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.3.2"/>
@@ -148983,15 +149023,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01639l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01639l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01666l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01666l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751l" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08495" sboTerm="SBO:0000176" id="MAR08495" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08495" sboTerm="SBO:0000176" id="R_MAR08495" name="2&apos;-deoxyguanosine 5&apos;-monophosphate phosphohydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -148999,7 +149039,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08495">
+            <rdf:Description rdf:about="#R_MAR08495">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.3.2"/>
@@ -149013,15 +149053,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01686l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01686l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01669l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01669l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751l" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03802" sboTerm="SBO:0000176" id="MAR03802" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03802" sboTerm="SBO:0000176" id="R_MAR03802" name="L-glutamate:NAD+ oxidoreductase (deaminating)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -149030,7 +149070,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03802">
+            <rdf:Description rdf:about="#R_MAR03802">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.4.1.3"/>
@@ -149044,21 +149084,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01306m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02578m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01306m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02578m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01974m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01974m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Gdh"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03804" sboTerm="SBO:0000176" id="MAR03804" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03804" sboTerm="SBO:0000176" id="R_MAR03804" name="L-glutamate:NADP+ oxidoreductase (deaminating)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -149067,7 +149107,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03804">
+            <rdf:Description rdf:about="#R_MAR03804">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.4.1.3"/>
@@ -149081,21 +149121,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01306m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02555m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02578m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01306m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02555m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02578m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01974m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01974m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Gdh"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03811" sboTerm="SBO:0000176" id="MAR03811" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03811" sboTerm="SBO:0000176" id="R_MAR03811" name="L-Citrulline:L-aspartate ligase (AMP-forming)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -149104,7 +149144,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03811">
+            <rdf:Description rdf:about="#R_MAR03811">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.3.4.5"/>
@@ -149118,21 +149158,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01370c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01588c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01370c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01588c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01334c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01366c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01366c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Ass"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03813" sboTerm="SBO:0000176" id="MAR03813" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03813" sboTerm="SBO:0000176" id="R_MAR03813" name="2-(Nomega-L-arginino)succinate arginine-lyase (fumarate-forming)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -149141,7 +149181,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03813">
+            <rdf:Description rdf:about="#R_MAR03813">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.3.2.1"/>
@@ -149155,11 +149195,11 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01365c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01862c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01365c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01862c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01366c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01366c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -149168,7 +149208,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03822" sboTerm="SBO:0000176" id="MAR03822" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03822" sboTerm="SBO:0000176" id="R_MAR03822" name="(S)-1-pyrroline-5-carboxylate:NAD+ oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -149176,7 +149216,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03822">
+            <rdf:Description rdf:about="#R_MAR03822">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.5.1.12"/>
@@ -149190,20 +149230,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00559m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00559m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01974m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01974m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="P5CDh1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03827" sboTerm="SBO:0000176" id="MAR03827" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03827" sboTerm="SBO:0000176" id="R_MAR03827" name="L-Aspartate:2-oxoglutarate aminotransferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -149212,7 +149252,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03827">
+            <rdf:Description rdf:about="#R_MAR03827">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.6.1.1"/>
@@ -149226,18 +149266,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01306m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01370m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01306m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01370m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01974m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02633m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01974m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02633m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Got2"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03829" sboTerm="SBO:0000176" id="MAR03829" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03829" sboTerm="SBO:0000176" id="R_MAR03829" name="L-Aspartate:2-oxoglutarate aminotransferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -149246,7 +149286,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03829">
+            <rdf:Description rdf:about="#R_MAR03829">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.6.1.1"/>
@@ -149260,18 +149300,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01306c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01370c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01306c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01370c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01974c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02633c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01974c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02633c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Got1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03831" sboTerm="SBO:0000176" id="MAR03831" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03831" sboTerm="SBO:0000176" id="R_MAR03831" name="L-aspartate ammonia-lyase (fumarate-forming)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -149279,7 +149319,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03831">
+            <rdf:Description rdf:about="#R_MAR03831">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.3.1.1"/>
@@ -149291,18 +149331,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01370c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01370c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01862c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02578c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01862c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02578c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Fum1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03862" sboTerm="SBO:0000176" id="MAR03862" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03862" sboTerm="SBO:0000176" id="R_MAR03862" name="L-asparagine amidohydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -149310,7 +149350,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03862">
+            <rdf:Description rdf:about="#R_MAR03862">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.4.19.5"/>
@@ -149324,13 +149364,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01369m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01369m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01370m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02578m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01370m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02578m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -149340,7 +149380,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03865" sboTerm="SBO:0000176" id="MAR03865" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03865" sboTerm="SBO:0000176" id="R_MAR03865" name="3-sulfino-L-alanine:2-oxoglutarate aminotransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -149348,7 +149388,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03865">
+            <rdf:Description rdf:about="#R_MAR03865">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.6.1.1"/>
@@ -149362,19 +149402,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00918m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01306m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00918m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01306m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00919m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01974m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00919m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01974m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Got2"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03890" sboTerm="SBO:0000176" id="MAR03890" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03890" sboTerm="SBO:0000176" id="R_MAR03890" name="L-Glutamate:ammonia ligase (ADP-forming)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -149383,7 +149423,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03890">
+            <rdf:Description rdf:about="#R_MAR03890">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.3.1.2"/>
@@ -149397,20 +149437,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01974c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02578c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01974c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02578c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01975c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01975c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Gs2"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03892" sboTerm="SBO:0000176" id="MAR03892" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03892" sboTerm="SBO:0000176" id="R_MAR03892" name="L-glutamine amidohydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -149419,7 +149459,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03892">
+            <rdf:Description rdf:about="#R_MAR03892">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.5.1.2"/>
@@ -149436,19 +149476,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01975m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01975m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01974m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02578m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01974m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02578m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="GLS"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR09802" sboTerm="SBO:0000176" id="MAR09802" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09802" sboTerm="SBO:0000176" id="R_MAR09802" name="L-glutamine amidohydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -149457,7 +149497,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09802">
+            <rdf:Description rdf:about="#R_MAR09802">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.5.1.2"/>
@@ -149474,19 +149514,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01975c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01975c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01974c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02578c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01974c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02578c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="GLS"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03899" sboTerm="SBO:0000176" id="MAR03899" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03899" sboTerm="SBO:0000176" id="R_MAR03899" name="L-Alanine:2-oxoglutarate aminotransferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -149495,7 +149535,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03899">
+            <rdf:Description rdf:about="#R_MAR03899">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.6.1.2"/>
@@ -149511,18 +149551,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01306c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01307c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01306c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01307c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01974c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02819c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01974c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02819c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG1640"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03903" sboTerm="SBO:0000176" id="MAR03903" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03903" sboTerm="SBO:0000176" id="R_MAR03903" name="L-aspartate:L-glutamine amido-ligase (AMP-forming)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -149531,7 +149571,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03903">
+            <rdf:Description rdf:about="#R_MAR03903">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.3.5.4"/>
@@ -149545,23 +149585,23 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01370c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01975c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01370c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01975c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01334c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01369c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01974c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01369c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01974c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="AsnS"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04109" sboTerm="SBO:0000176" id="MAR04109" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04109" sboTerm="SBO:0000176" id="R_MAR04109" name="L-Alanine:2-oxoglutarate aminotransferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -149570,7 +149610,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04109">
+            <rdf:Description rdf:about="#R_MAR04109">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.6.1.2"/>
@@ -149585,18 +149625,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01306m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01307m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01306m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01307m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01974m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02819m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01974m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02819m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG1640"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04114" sboTerm="SBO:0000176" id="MAR04114" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04114" sboTerm="SBO:0000176" id="R_MAR04114" name="2-oxoglutaramate amidohydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -149605,7 +149645,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04114">
+            <rdf:Description rdf:about="#R_MAR04114">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.5.1.3"/>
@@ -149618,19 +149658,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00672c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00672c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01306c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02578c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01306c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02578c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG8132"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04115" sboTerm="SBO:0000176" id="MAR04115" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04115" sboTerm="SBO:0000176" id="R_MAR04115" name="2-oxoglutaramate amidohydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -149639,7 +149679,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04115">
+            <rdf:Description rdf:about="#R_MAR04115">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.5.1.3"/>
@@ -149652,19 +149692,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00672m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00672m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01306m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02578m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01306m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02578m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG8132"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04172" sboTerm="SBO:0000176" id="MAR04172" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04172" sboTerm="SBO:0000176" id="R_MAR04172" name="L-asparagine amidohydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -149673,7 +149713,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04172">
+            <rdf:Description rdf:about="#R_MAR04172">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.5.1.1"/>
@@ -149687,13 +149727,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01369c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01369c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01370c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02578c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01370c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02578c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -149703,7 +149743,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04196" sboTerm="SBO:0000176" id="MAR04196" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04196" sboTerm="SBO:0000176" id="R_MAR04196" name="L-Glutamine:pyruvate aminotransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -149712,7 +149752,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04196">
+            <rdf:Description rdf:about="#R_MAR04196">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.6.1.15"/>
@@ -149726,18 +149766,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01975c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02819c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01975c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02819c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00672c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01307c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00672c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01307c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Kyat"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04197" sboTerm="SBO:0000176" id="MAR04197" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04197" sboTerm="SBO:0000176" id="R_MAR04197" name="L-Glutamine:pyruvate aminotransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -149746,7 +149786,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04197">
+            <rdf:Description rdf:about="#R_MAR04197">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.6.1.15"/>
@@ -149760,12 +149800,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01975m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02819m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01975m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02819m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00672m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01307m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00672m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01307m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -149774,7 +149814,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04287" sboTerm="SBO:0000176" id="MAR04287" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04287" sboTerm="SBO:0000176" id="R_MAR04287" name="succinate-semialdehyde:NADP+ oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -149783,7 +149823,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04287">
+            <rdf:Description rdf:about="#R_MAR04287">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.2.1.16"/>
@@ -149798,20 +149838,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02942m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02942m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039m" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02555m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02943m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02555m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02943m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Ldh"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04690" sboTerm="SBO:0000176" id="MAR04690" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04690" sboTerm="SBO:0000176" id="R_MAR04690" name="L-glutamate 1-carboxy-lyase (4-aminobutanoate-forming)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -149819,7 +149859,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04690">
+            <rdf:Description rdf:about="#R_MAR04690">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.1.1.15"/>
@@ -149833,18 +149873,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01974c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01974c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00970c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01596c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00970c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01596c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Gad1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04693" sboTerm="SBO:0000176" id="MAR04693" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04693" sboTerm="SBO:0000176" id="R_MAR04693" name="4-aminobutanoate:2-oxoglutarate aminotransferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -149852,7 +149892,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04693">
+            <rdf:Description rdf:about="#R_MAR04693">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.6.1.19"/>
@@ -149866,18 +149906,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00970m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01306m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00970m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01306m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01974m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02942m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01974m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02942m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Gabat"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06780" sboTerm="SBO:0000176" id="MAR06780" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06780" sboTerm="SBO:0000176" id="R_MAR06780" name="L-tyrosine:2-oxoglutarate aminotransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -149885,7 +149925,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06780">
+            <rdf:Description rdf:about="#R_MAR06780">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.6.1.5"/>
@@ -149900,12 +149940,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01306m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03101m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01306m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03101m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01005m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01974m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01005m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01974m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -149914,7 +149954,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06970" sboTerm="SBO:0000176" id="MAR06970" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06970" sboTerm="SBO:0000176" id="R_MAR06970" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -149923,7 +149963,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06970">
+            <rdf:Description rdf:about="#R_MAR06970">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.6.1.2"/>
@@ -149935,18 +149975,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00169c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01306c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00169c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01306c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00671c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01974c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00671c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01974c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG1640"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06971" sboTerm="SBO:0000176" id="MAR06971" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06971" sboTerm="SBO:0000176" id="R_MAR06971" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -149955,7 +149995,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06971">
+            <rdf:Description rdf:about="#R_MAR06971">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.2.4"/>
@@ -149967,14 +150007,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00169c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01127c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00169c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01127c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01931c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01931c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR06972" sboTerm="SBO:0000176" id="MAR06972" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06972" sboTerm="SBO:0000176" id="R_MAR06972" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -149983,7 +150023,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06972">
+            <rdf:Description rdf:about="#R_MAR06972">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.2.4"/>
@@ -149995,14 +150035,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01127c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02026c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01127c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01928c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01928c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07641" sboTerm="SBO:0000176" id="MAR07641" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07641" sboTerm="SBO:0000176" id="R_MAR07641" name="D-Aspartate:oxygen oxidoreductase (deaminating)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -150010,7 +150050,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07641">
+            <rdf:Description rdf:about="#R_MAR07641">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.4.3.1"/>
@@ -150026,21 +150066,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01641x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01641x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02041x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02578x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02633x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02578x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02633x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Daao1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07642" sboTerm="SBO:0000176" id="MAR07642" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07642" sboTerm="SBO:0000176" id="R_MAR07642" name="alanine racemase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -150048,7 +150088,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07642">
+            <rdf:Description rdf:about="#R_MAR07642">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ALAR"/>
@@ -150061,16 +150101,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01638c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01638c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01307c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01307c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG1983"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03806" sboTerm="SBO:0000176" id="MAR03806" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03806" sboTerm="SBO:0000176" id="R_MAR03806" name="L-glutamate gamma-semialdehyde:NAD+ oxidoreductase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -150079,7 +150119,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03806">
+            <rdf:Description rdf:about="#R_MAR03806">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.5.1.12"/>
@@ -150094,20 +150134,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01974m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01974m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02374m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02374m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="P5CDh1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03807" sboTerm="SBO:0000176" id="MAR03807" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03807" sboTerm="SBO:0000176" id="R_MAR03807" name="L-Ornithine:2-oxo-acid aminotransferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -150116,7 +150156,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03807">
+            <rdf:Description rdf:about="#R_MAR03807">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.6.1.13"/>
@@ -150130,18 +150170,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01306m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02658m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01306m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02658m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01974m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02374m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01974m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02374m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Oat"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03816" sboTerm="SBO:0000176" id="MAR03816" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03816" sboTerm="SBO:0000176" id="R_MAR03816" name="L-Arginine amidinohydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -150150,7 +150190,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03816">
+            <rdf:Description rdf:about="#R_MAR03816">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.5.3.1"/>
@@ -150163,18 +150203,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01365c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01365c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02658c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03121c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02658c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03121c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="arg"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03819" sboTerm="SBO:0000176" id="MAR03819" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03819" sboTerm="SBO:0000176" id="R_MAR03819" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -150182,7 +150222,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03819">
+            <rdf:Description rdf:about="#R_MAR03819">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.5.1.12"/>
@@ -150196,18 +150236,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00559c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00559c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02374c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02374c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="P5CDh1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03820" sboTerm="SBO:0000176" id="MAR03820" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03820" sboTerm="SBO:0000176" id="R_MAR03820" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -150216,7 +150256,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03820">
+            <rdf:Description rdf:about="#R_MAR03820">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.5.1.12"/>
@@ -150230,18 +150270,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00559m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00559m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02374m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02374m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="P5CDh1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03832" sboTerm="SBO:0000176" id="MAR03832" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03832" sboTerm="SBO:0000176" id="R_MAR03832" name="L-Arginine iminohydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -150249,7 +150289,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03832">
+            <rdf:Description rdf:about="#R_MAR03832">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.5.3.6"/>
@@ -150261,16 +150301,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01365c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01365c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01588c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02578c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01588c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02578c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03833" sboTerm="SBO:0000176" id="MAR03833" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03833" sboTerm="SBO:0000176" id="R_MAR03833" name="L-Proline:NADP+ 5-oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -150279,7 +150319,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03833">
+            <rdf:Description rdf:about="#R_MAR03833">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.5.1.2"/>
@@ -150293,16 +150333,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00559c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00559c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02770c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02770c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03835" sboTerm="SBO:0000176" id="MAR03835" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03835" sboTerm="SBO:0000176" id="R_MAR03835" name="L-Proline:NAD+ 5-oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -150311,7 +150351,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03835">
+            <rdf:Description rdf:about="#R_MAR03835">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.5.1.2"/>
@@ -150325,16 +150365,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00559c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02553c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00559c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02553c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02552c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02770c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02770c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03837" sboTerm="SBO:0000176" id="MAR03837" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03837" sboTerm="SBO:0000176" id="R_MAR03837" name="L-Proline:NAD+ 5-oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -150342,7 +150382,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03837">
+            <rdf:Description rdf:about="#R_MAR03837">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.5.1.2"/>
@@ -150357,16 +150397,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00559m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00559m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02552m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02770m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02770m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03838" sboTerm="SBO:0000176" id="MAR03838" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03838" sboTerm="SBO:0000176" id="R_MAR03838" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -150375,7 +150415,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03838">
+            <rdf:Description rdf:about="#R_MAR03838">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.5.99.8"/>
@@ -150385,19 +150425,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00559m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03102m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00559m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03102m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02770m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03103m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02770m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03103m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="slgA"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03895" sboTerm="SBO:0000176" id="MAR03895" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03895" sboTerm="SBO:0000176" id="R_MAR03895" name="ATP:L-glutamate 5-phosphotransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -150406,7 +150446,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03895">
+            <rdf:Description rdf:about="#R_MAR03895">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.2.11"/>
@@ -150420,18 +150460,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01974m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01974m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01976m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01976m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="P5CS"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03897" sboTerm="SBO:0000176" id="MAR03897" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03897" sboTerm="SBO:0000176" id="R_MAR03897" name="L-glutamate-5-semialdehyde:NADP+ 5-oxidoreductase (phosphorylating)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -150440,7 +150480,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03897">
+            <rdf:Description rdf:about="#R_MAR03897">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.2.1.41"/>
@@ -150454,20 +150494,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01976m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01976m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02374m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02374m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="P5CS"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03956" sboTerm="SBO:0000176" id="MAR03956" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03956" sboTerm="SBO:0000176" id="R_MAR03956" name="carbonate hydro-lyase (carbon-dioxide-forming)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -150475,7 +150515,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03956">
+            <rdf:Description rdf:about="#R_MAR03956">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.1"/>
@@ -150491,18 +150531,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01596m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01596m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CAH1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03993" sboTerm="SBO:0000176" id="MAR03993" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03993" sboTerm="SBO:0000176" id="R_MAR03993" name="N-(omega)-Hydroxyarginine,NADPH:oxygen oxidoreductase (nitric-oxide-forming)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -150510,7 +150550,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03993">
+            <rdf:Description rdf:about="#R_MAR03993">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.13.39"/>
@@ -150526,22 +150566,22 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02497c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02497c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="2" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01588c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02609c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01588c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02609c" stoichiometry="2" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Nos"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04073" sboTerm="SBO:0000176" id="MAR04073" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04073" sboTerm="SBO:0000176" id="R_MAR04073" name="S-adenosyl-L-methionine carboxy-lyase [S-adenosyl 3-(methylsulfanyl)propylamine-forming]" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -150550,7 +150590,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04073">
+            <rdf:Description rdf:about="#R_MAR04073">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.1.1.50"/>
@@ -150566,18 +150606,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02877c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02877c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01596c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02870c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01596c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02870c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="SamDC"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04075" sboTerm="SBO:0000176" id="MAR04075" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04075" sboTerm="SBO:0000176" id="R_MAR04075" name="S-adenosylmethioninamine:putrescine 3-aminopropyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -150586,7 +150626,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04075">
+            <rdf:Description rdf:about="#R_MAR04075">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.5.1.16"/>
@@ -150602,19 +150642,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02812c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02870c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02812c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02870c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01116c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02923c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01116c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02923c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="SpdS"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04077" sboTerm="SBO:0000176" id="MAR04077" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04077" sboTerm="SBO:0000176" id="R_MAR04077" name="S-adenosylmethioninamine:spermidine 3-aminopropyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -150623,7 +150663,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04077">
+            <rdf:Description rdf:about="#R_MAR04077">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.5.1.16"/>
@@ -150638,13 +150678,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02870c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02923c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02870c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02923c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01116c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02926c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01116c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02926c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -150653,7 +150693,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04190" sboTerm="SBO:0000176" id="MAR04190" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04190" sboTerm="SBO:0000176" id="R_MAR04190" name="L-arginine,NADPH:oxygen oxidoreductase (N-(omega)-hydroxyarginine-forming)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -150662,7 +150702,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04190">
+            <rdf:Description rdf:about="#R_MAR04190">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.13.39"/>
@@ -150677,21 +150717,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01365c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01365c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02497c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02497c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Nos"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04191" sboTerm="SBO:0000176" id="MAR04191" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04191" sboTerm="SBO:0000176" id="R_MAR04191" name="L-arginine carboxy-lyase (agmatine-forming)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -150700,7 +150740,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04191">
+            <rdf:Description rdf:about="#R_MAR04191">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.1.1.19"/>
@@ -150714,18 +150754,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01365m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01365m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01303m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01596m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01303m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01596m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Odc2"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04212" sboTerm="SBO:0000176" id="MAR04212" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04212" sboTerm="SBO:0000176" id="R_MAR04212" name="L-ornithine carboxy-lyase (putrescine-forming)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -150734,7 +150774,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04212">
+            <rdf:Description rdf:about="#R_MAR04212">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.1.1.17"/>
@@ -150749,18 +150789,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02658c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02658c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01596c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02812c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01596c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02812c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Odc1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04422" sboTerm="SBO:0000176" id="MAR04422" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04422" sboTerm="SBO:0000176" id="R_MAR04422" name="L-ornithine carboxy-lyase (putrescine-forming)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -150769,7 +150809,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04422">
+            <rdf:Description rdf:about="#R_MAR04422">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.1.1.17"/>
@@ -150784,18 +150824,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02658e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02658e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01596e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02812e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01596e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02812e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Odc1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04605" sboTerm="SBO:0000176" id="MAR04605" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04605" sboTerm="SBO:0000176" id="R_MAR04605" name="4-Aminobutyraldehyde:NAD+ oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -150804,7 +150844,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04605">
+            <rdf:Description rdf:about="#R_MAR04605">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.2.1.3"/>
@@ -150817,14 +150857,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00969m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00969m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00970m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02555m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00970m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02555m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -150832,7 +150872,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04776" sboTerm="SBO:0000176" id="MAR04776" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04776" sboTerm="SBO:0000176" id="R_MAR04776" name="L-Proline,2-oxoglutarate:oxygen oxidoreductase (4-hydroxylating)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -150840,7 +150880,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04776">
+            <rdf:Description rdf:about="#R_MAR04776">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.11.2"/>
@@ -150853,17 +150893,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01306c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02770c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01306c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02770c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01596c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02943c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03037c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01596c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02943c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03037c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR04777" sboTerm="SBO:0000176" id="MAR04777" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04777" sboTerm="SBO:0000176" id="R_MAR04777" name="L-Proline,2-oxoglutarate:oxygen oxidoreductase (4-hydroxylating)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -150871,7 +150911,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04777">
+            <rdf:Description rdf:about="#R_MAR04777">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.11.2"/>
@@ -150884,17 +150924,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01306m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02770m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01306m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02770m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01596m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02943m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03037m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01596m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02943m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03037m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR04778" sboTerm="SBO:0000176" id="MAR04778" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04778" sboTerm="SBO:0000176" id="R_MAR04778" name="trans-4-Hydroxy-L-proline:NAD+ 5-oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -150903,7 +150943,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04778">
+            <rdf:Description rdf:about="#R_MAR04778">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.5.1.2"/>
@@ -150916,16 +150956,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02552c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03037c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03037c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02320c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02320c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR04779" sboTerm="SBO:0000176" id="MAR04779" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04779" sboTerm="SBO:0000176" id="R_MAR04779" name="trans-4-Hydroxy-L-proline:NAD+ 5-oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -150934,7 +150974,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04779">
+            <rdf:Description rdf:about="#R_MAR04779">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.5.1.2"/>
@@ -150947,16 +150987,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02552m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03037m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03037m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039m" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02320m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02320m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR04780" sboTerm="SBO:0000176" id="MAR04780" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04780" sboTerm="SBO:0000176" id="R_MAR04780" name="trans-4-Hydroxy-L-proline:NADP+ 5-oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -150965,7 +151005,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04780">
+            <rdf:Description rdf:about="#R_MAR04780">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.5.1.2"/>
@@ -150978,16 +151018,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03037c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03037c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02320c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02320c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR04781" sboTerm="SBO:0000176" id="MAR04781" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04781" sboTerm="SBO:0000176" id="R_MAR04781" name="trans-4-Hydroxy-L-proline:NADP+ 5-oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -150996,7 +151036,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04781">
+            <rdf:Description rdf:about="#R_MAR04781">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.5.1.2"/>
@@ -151009,16 +151049,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02554m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03037m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03037m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039m" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02320m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02320m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR04784" sboTerm="SBO:0000176" id="MAR04784" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04784" sboTerm="SBO:0000176" id="R_MAR04784" name="L-1-pyrroline-3-hydroxy-5-carboxylate:NAD+ oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -151027,7 +151067,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04784">
+            <rdf:Description rdf:about="#R_MAR04784">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.5.1.12"/>
@@ -151041,20 +151081,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040m" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02320m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02320m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02358m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02358m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="P5CDh1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04785" sboTerm="SBO:0000176" id="MAR04785" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04785" sboTerm="SBO:0000176" id="R_MAR04785" name="L-1-pyrroline-3-hydroxy-5-carboxylate:NADP+ oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -151063,7 +151103,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04785">
+            <rdf:Description rdf:about="#R_MAR04785">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.5.1.12"/>
@@ -151076,20 +151116,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040m" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02320m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02320m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02358m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02358m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="P5CDh1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04786" sboTerm="SBO:0000176" id="MAR04786" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04786" sboTerm="SBO:0000176" id="R_MAR04786" name="L-erythro-4-hydroxyglutamate:2-oxoglutarate aminotransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -151097,7 +151137,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04786">
+            <rdf:Description rdf:about="#R_MAR04786">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.6.1.1"/>
@@ -151111,12 +151151,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01306m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02358m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01306m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02358m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00989m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01974m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00989m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01974m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -151125,7 +151165,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05384" sboTerm="SBO:0000176" id="MAR05384" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05384" sboTerm="SBO:0000176" id="R_MAR05384" name="S-methyl-5&apos;-thioadenosine:phosphate S-methyl-5-thio-alpha-D-ribosyl-transferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -151134,7 +151174,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05384">
+            <rdf:Description rdf:about="#R_MAR05384">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.2.28"/>
@@ -151150,18 +151190,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01116c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01116c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01279c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02481c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01279c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02481c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Mtap"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06929" sboTerm="SBO:0000176" id="MAR06929" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06929" sboTerm="SBO:0000176" id="R_MAR06929" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -151170,7 +151210,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06929">
+            <rdf:Description rdf:about="#R_MAR06929">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.57"/>
@@ -151182,19 +151222,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02504c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02504c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02926c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02926c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG4210"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06930" sboTerm="SBO:0000176" id="MAR06930" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06930" sboTerm="SBO:0000176" id="R_MAR06930" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -151203,7 +151243,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06930">
+            <rdf:Description rdf:about="#R_MAR06930">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.57"/>
@@ -151215,19 +151255,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02504x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02504x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02926x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02926x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG4210"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06938" sboTerm="SBO:0000176" id="MAR06938" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06938" sboTerm="SBO:0000176" id="R_MAR06938" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -151236,7 +151276,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06938">
+            <rdf:Description rdf:about="#R_MAR06938">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.57"/>
@@ -151248,19 +151288,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02503c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02503c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02923c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02923c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG4210"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06939" sboTerm="SBO:0000176" id="MAR06939" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06939" sboTerm="SBO:0000176" id="R_MAR06939" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -151269,7 +151309,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06939">
+            <rdf:Description rdf:about="#R_MAR06939">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.57"/>
@@ -151280,19 +151320,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02503x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02503x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02923x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02923x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG4210"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06940" sboTerm="SBO:0000176" id="MAR06940" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06940" sboTerm="SBO:0000176" id="R_MAR06940" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -151300,7 +151340,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06940">
+            <rdf:Description rdf:about="#R_MAR06940">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR104492"/>
@@ -151311,16 +151351,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02518c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02518c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02923c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02923c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR06953" sboTerm="SBO:0000176" id="MAR06953" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06953" sboTerm="SBO:0000176" id="R_MAR06953" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -151329,7 +151369,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06953">
+            <rdf:Description rdf:about="#R_MAR06953">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.2.1.-"/>
@@ -151341,20 +151381,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02921c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02921c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02553c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02811c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02553c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02811c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG5065"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06954" sboTerm="SBO:0000176" id="MAR06954" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06954" sboTerm="SBO:0000176" id="R_MAR06954" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -151363,7 +151403,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06954">
+            <rdf:Description rdf:about="#R_MAR06954">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.2.1.-"/>
@@ -151375,20 +151415,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02922c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02922c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02188c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02188c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG5065"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06955" sboTerm="SBO:0000176" id="MAR06955" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06955" sboTerm="SBO:0000176" id="R_MAR06955" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -151397,7 +151437,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06955">
+            <rdf:Description rdf:about="#R_MAR06955">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.6.1.82"/>
@@ -151412,14 +151452,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00557m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00557m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00969m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00969m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR06956" sboTerm="SBO:0000176" id="MAR06956" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06956" sboTerm="SBO:0000176" id="R_MAR06956" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -151427,7 +151467,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06956">
+            <rdf:Description rdf:about="#R_MAR06956">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR103503"/>
@@ -151438,16 +151478,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02501c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02501c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02504c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02504c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR06957" sboTerm="SBO:0000176" id="MAR06957" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06957" sboTerm="SBO:0000176" id="R_MAR06957" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -151455,7 +151495,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06957">
+            <rdf:Description rdf:about="#R_MAR06957">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_6957"/>
@@ -151465,16 +151505,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02501x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02501x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02504x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02504x" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR06958" sboTerm="SBO:0000176" id="MAR06958" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06958" sboTerm="SBO:0000176" id="R_MAR06958" name="N1-acetylspermine:oxygen oxidoreductase (3-acetamidopropanal-forming)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -151483,7 +151523,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06958">
+            <rdf:Description rdf:about="#R_MAR06958">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.5.3.13"/>
@@ -151497,14 +151537,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02504c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02504c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01250c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02041c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02923c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01250c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02923c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -151513,7 +151553,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06959" sboTerm="SBO:0000176" id="MAR06959" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06959" sboTerm="SBO:0000176" id="R_MAR06959" name="N1-acetylspermine:oxygen oxidoreductase (3-acetamidopropanal-forming)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -151522,7 +151562,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06959">
+            <rdf:Description rdf:about="#R_MAR06959">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.5.3.13"/>
@@ -151536,14 +151576,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02504x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02504x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01250x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02041x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02923x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01250x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02923x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -151552,7 +151592,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06960" sboTerm="SBO:0000176" id="MAR06960" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06960" sboTerm="SBO:0000176" id="R_MAR06960" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -151560,7 +151600,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06960">
+            <rdf:Description rdf:about="#R_MAR06960">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR103502"/>
@@ -151571,16 +151611,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02502c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02502c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02503c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02503c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR06961" sboTerm="SBO:0000176" id="MAR06961" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06961" sboTerm="SBO:0000176" id="R_MAR06961" name="N1-acetylspermidine:oxygen oxidoreductase (3-acetamidopropanal-forming)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -151589,7 +151629,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06961">
+            <rdf:Description rdf:about="#R_MAR06961">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.5.3.13"/>
@@ -151603,14 +151643,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02503c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02503c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01250c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02041c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02812c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01250c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02812c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -151619,7 +151659,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06962" sboTerm="SBO:0000176" id="MAR06962" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06962" sboTerm="SBO:0000176" id="R_MAR06962" name="N1-acetylspermidine:oxygen oxidoreductase (3-acetamidopropanal-forming)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -151628,7 +151668,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06962">
+            <rdf:Description rdf:about="#R_MAR06962">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.5.3.13"/>
@@ -151642,14 +151682,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02503x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02503x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01250x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02041x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02812x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01250x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02812x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -151658,7 +151698,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06963" sboTerm="SBO:0000176" id="MAR06963" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06963" sboTerm="SBO:0000176" id="R_MAR06963" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -151667,7 +151707,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06963">
+            <rdf:Description rdf:about="#R_MAR06963">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.5.3.13"/>
@@ -151680,14 +151720,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02501c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02501c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01250c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02041c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02503c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01250c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02503c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -151696,7 +151736,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06964" sboTerm="SBO:0000176" id="MAR06964" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06964" sboTerm="SBO:0000176" id="R_MAR06964" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -151705,7 +151745,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06964">
+            <rdf:Description rdf:about="#R_MAR06964">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.5.3.13"/>
@@ -151718,14 +151758,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02501x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02501x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01250x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02041x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02503x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01250x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02503x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -151734,7 +151774,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06965" sboTerm="SBO:0000176" id="MAR06965" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06965" sboTerm="SBO:0000176" id="R_MAR06965" name="spermidine:NAD+ oxidoreductase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -151743,7 +151783,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06965">
+            <rdf:Description rdf:about="#R_MAR06965">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.5.1.46"/>
@@ -151758,19 +151798,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01661c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01661c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02552c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02923c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02923c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Dhps"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06966" sboTerm="SBO:0000176" id="MAR06966" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06966" sboTerm="SBO:0000176" id="R_MAR06966" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -151779,7 +151819,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06966">
+            <rdf:Description rdf:about="#R_MAR06966">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.5.1.46"/>
@@ -151791,17 +151831,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00248c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00557c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00248c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00557c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01661c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01661c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Dhps"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06967" sboTerm="SBO:0000176" id="MAR06967" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06967" sboTerm="SBO:0000176" id="R_MAR06967" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -151810,7 +151850,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06967">
+            <rdf:Description rdf:about="#R_MAR06967">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.5.1.46"/>
@@ -151822,18 +151862,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00248c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01670c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00248c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01670c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02426c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02923c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02426c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02923c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Dhps"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06973" sboTerm="SBO:0000176" id="MAR06973" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06973" sboTerm="SBO:0000176" id="R_MAR06973" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -151842,7 +151882,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06973">
+            <rdf:Description rdf:about="#R_MAR06973">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.2.1.-"/>
@@ -151854,20 +151894,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02553c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02919c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02553c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02919c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02925c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02925c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG5065"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08096" sboTerm="SBO:0000176" id="MAR08096" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08096" sboTerm="SBO:0000176" id="R_MAR08096" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -151875,7 +151915,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08096">
+            <rdf:Description rdf:about="#R_MAR08096">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.5.1.12"/>
@@ -151889,18 +151929,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02320m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02320m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02327m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02327m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="P5CDh1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08097" sboTerm="SBO:0000176" id="MAR08097" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08097" sboTerm="SBO:0000176" id="R_MAR08097" name="L-erythro-4-Hydroxyglutamate:NAD+ oxidoreductase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -151908,7 +151948,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08097">
+            <rdf:Description rdf:about="#R_MAR08097">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.5.1.12"/>
@@ -151922,20 +151962,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039m" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02358m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02358m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02327m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02327m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="P5CDh1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08098" sboTerm="SBO:0000176" id="MAR08098" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08098" sboTerm="SBO:0000176" id="R_MAR08098" name="D-aspartate:2-oxoglutarate aminotransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -151943,7 +151983,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08098">
+            <rdf:Description rdf:about="#R_MAR08098">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.6.1.21"/>
@@ -151958,18 +151998,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02358m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02633m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02358m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02633m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00989m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01370m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00989m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01370m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Got2"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08425" sboTerm="SBO:0000176" id="MAR08425" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08425" sboTerm="SBO:0000176" id="R_MAR08425" name="N2-Acetyl-L-ornithine amidohydrolase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -151977,7 +152017,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08425">
+            <rdf:Description rdf:about="#R_MAR08425">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.5.1.14"/>
@@ -151991,12 +152031,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02546c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02546c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01252c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02658c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01252c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02658c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -152006,7 +152046,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08426" sboTerm="SBO:0000176" id="MAR08426" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08426" sboTerm="SBO:0000176" id="R_MAR08426" name="L-Arginine amidinohydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -152014,7 +152054,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08426">
+            <rdf:Description rdf:about="#R_MAR08426">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.5.3.1"/>
@@ -152028,18 +152068,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01365m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01365m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02658m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03121m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02658m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03121m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="arg"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08427" sboTerm="SBO:0000176" id="MAR08427" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08427" sboTerm="SBO:0000176" id="R_MAR08427" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -152047,7 +152087,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08427">
+            <rdf:Description rdf:about="#R_MAR08427">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.3.2"/>
@@ -152060,13 +152100,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01285m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01620m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01620m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01371m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01619m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01619m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -152075,7 +152115,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08431" sboTerm="SBO:0000176" id="MAR08431" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08431" sboTerm="SBO:0000176" id="R_MAR08431" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -152083,7 +152123,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08431">
+            <rdf:Description rdf:about="#R_MAR08431">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CRTSLt"/>
@@ -152095,14 +152135,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01620c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01620c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01621c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01621c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08432" sboTerm="SBO:0000176" id="MAR08432" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08432" sboTerm="SBO:0000176" id="R_MAR08432" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -152110,7 +152150,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08432">
+            <rdf:Description rdf:about="#R_MAR08432">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.5.8.3"/>
@@ -152123,20 +152163,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01802m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02880m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02980m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01802m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02880m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02980m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01045m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01803m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01986m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01045m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01803m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Sardh"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08603" sboTerm="SBO:0000176" id="MAR08603" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08603" sboTerm="SBO:0000176" id="R_MAR08603" name="acetyl-CoA:putrescine N-acetyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -152144,7 +152184,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08603">
+            <rdf:Description rdf:about="#R_MAR08603">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.57"/>
@@ -152160,19 +152200,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01261c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02812c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02812c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02547c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02547c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG4210"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08604" sboTerm="SBO:0000176" id="MAR08604" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08604" sboTerm="SBO:0000176" id="R_MAR08604" name="N-Acetylputrescine:oxygen oxidoreductase(deaminating)(flavin-containing)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -152180,7 +152220,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08604">
+            <rdf:Description rdf:about="#R_MAR08604">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.4.3.4"/>
@@ -152194,21 +152234,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02547c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02547c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02041c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02514c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02578c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02514c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02578c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="shps"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08605" sboTerm="SBO:0000176" id="MAR08605" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08605" sboTerm="SBO:0000176" id="R_MAR08605" name="N4-Acetylaminobutanal:NAD+ oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -152216,7 +152256,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08605">
+            <rdf:Description rdf:about="#R_MAR08605">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.2.1.3"/>
@@ -152230,14 +152270,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02514c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02514c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00952c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02553c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00952c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02553c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -152245,7 +152285,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08607" sboTerm="SBO:0000176" id="MAR08607" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08607" sboTerm="SBO:0000176" id="R_MAR08607" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -152253,7 +152293,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08607">
+            <rdf:Description rdf:about="#R_MAR08607">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/UNK2"/>
@@ -152265,16 +152305,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01016c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01975c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01016c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01975c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="2" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01974c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02471c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01974c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02471c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08608" sboTerm="SBO:0000176" id="MAR08608" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08608" sboTerm="SBO:0000176" id="R_MAR08608" name="D-Proline:oxygen oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -152282,7 +152322,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08608">
+            <rdf:Description rdf:about="#R_MAR08608">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.4.3.3"/>
@@ -152296,19 +152336,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01742c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01742c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00558c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02041c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00558c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Daao1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08609" sboTerm="SBO:0000176" id="MAR08609" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08609" sboTerm="SBO:0000176" id="R_MAR08609" name="L-Proline:NADP+ 5-oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -152316,7 +152356,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08609">
+            <rdf:Description rdf:about="#R_MAR08609">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.5.1.2"/>
@@ -152330,16 +152370,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00559m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02555m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00559m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02555m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02554m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02770m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02770m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08610" sboTerm="SBO:0000176" id="MAR08610" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08610" sboTerm="SBO:0000176" id="R_MAR08610" name="L-proline:(acceptor) oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -152347,7 +152387,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08610">
+            <rdf:Description rdf:about="#R_MAR08610">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.5.99.8"/>
@@ -152361,19 +152401,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01802c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02770c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01802c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02770c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00559c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01803c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00559c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01803c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="slgA"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08611" sboTerm="SBO:0000176" id="MAR08611" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08611" sboTerm="SBO:0000176" id="R_MAR08611" name="L-proline:(acceptor) oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -152381,7 +152421,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08611">
+            <rdf:Description rdf:about="#R_MAR08611">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.5.99.8"/>
@@ -152395,19 +152435,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01802m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02770m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01802m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02770m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00559m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01803m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00559m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01803m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="slgA"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04285" sboTerm="SBO:0000176" id="MAR04285" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04285" sboTerm="SBO:0000176" id="R_MAR04285" name="succinate-semialdehyde:NAD+ oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -152416,7 +152456,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04285">
+            <rdf:Description rdf:about="#R_MAR04285">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.2.1.24"/>
@@ -152432,14 +152472,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02942m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02942m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039m" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02943m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02943m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -152448,7 +152488,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00457" sboTerm="SBO:0000176" id="MAR00457" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00457" sboTerm="SBO:0000176" id="R_MAR00457" name="ATP:(R)-glycerate 3-phosphotransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -152457,7 +152497,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00457">
+            <rdf:Description rdf:about="#R_MAR00457">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.1.31"/>
@@ -152472,19 +152512,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01982c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01982c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00913c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00913c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG9886"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00460" sboTerm="SBO:0000176" id="MAR00460" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00460" sboTerm="SBO:0000176" id="R_MAR00460" name="ATP:(R)-glycerate 3-phosphotransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -152493,7 +152533,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00460">
+            <rdf:Description rdf:about="#R_MAR00460">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.1.31"/>
@@ -152508,19 +152548,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01982m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01982m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00913m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01285m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00913m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG9886"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03750" sboTerm="SBO:0000176" id="MAR03750" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03750" sboTerm="SBO:0000176" id="R_MAR03750" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -152529,7 +152569,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03750">
+            <rdf:Description rdf:about="#R_MAR03750">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.13"/>
@@ -152541,13 +152581,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02181m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02181m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01986m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02180m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02180m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -152556,7 +152596,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03752" sboTerm="SBO:0000176" id="MAR03752" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03752" sboTerm="SBO:0000176" id="R_MAR03752" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -152564,7 +152604,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03752">
+            <rdf:Description rdf:about="#R_MAR03752">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.8.5"/>
@@ -152576,18 +152616,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01803m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02468m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01803m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02468m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01802m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02180m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01802m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02180m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG3902"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03770" sboTerm="SBO:0000176" id="MAR03770" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03770" sboTerm="SBO:0000176" id="R_MAR03770" name="3-methylbutanoyl-CoA:electron-transfer flavoprotein 2,3-oxidoreductase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -152595,7 +152635,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03770">
+            <rdf:Description rdf:about="#R_MAR03770">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.8.5"/>
@@ -152608,18 +152648,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00826m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01803m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00826m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01803m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01802m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02189m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01802m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02189m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG3902"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03771" sboTerm="SBO:0000176" id="MAR03771" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03771" sboTerm="SBO:0000176" id="R_MAR03771" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -152628,7 +152668,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03771">
+            <rdf:Description rdf:about="#R_MAR03771">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.13"/>
@@ -152640,13 +152680,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02190m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02190m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01986m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02189m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02189m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -152655,7 +152695,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03772" sboTerm="SBO:0000176" id="MAR03772" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03772" sboTerm="SBO:0000176" id="R_MAR03772" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -152664,7 +152704,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03772">
+            <rdf:Description rdf:about="#R_MAR03772">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.13"/>
@@ -152676,13 +152716,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00825m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00825m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00826m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01986m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00826m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -152691,7 +152731,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03782" sboTerm="SBO:0000176" id="MAR03782" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03782" sboTerm="SBO:0000176" id="R_MAR03782" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -152700,7 +152740,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03782">
+            <rdf:Description rdf:about="#R_MAR03782">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.13"/>
@@ -152712,13 +152752,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00663m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01986m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00663m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00664m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00664m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -152727,7 +152767,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03784" sboTerm="SBO:0000176" id="MAR03784" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03784" sboTerm="SBO:0000176" id="R_MAR03784" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -152735,7 +152775,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03784">
+            <rdf:Description rdf:about="#R_MAR03784">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.8.5"/>
@@ -152747,18 +152787,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00663m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01802m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00663m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01802m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01803m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02999m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01803m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02999m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG3902"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03839" sboTerm="SBO:0000176" id="MAR03839" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03839" sboTerm="SBO:0000176" id="R_MAR03839" name="3-Phospho-D-glycerate:NAD+ 2-oxidoreductase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -152767,7 +152807,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03839">
+            <rdf:Description rdf:about="#R_MAR03839">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.95"/>
@@ -152781,19 +152821,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00913c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00913c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00914c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00914c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG6287"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03841" sboTerm="SBO:0000176" id="MAR03841" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03841" sboTerm="SBO:0000176" id="R_MAR03841" name="3-Phosphoserine:2-oxoglutarate aminotransferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -152802,7 +152842,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03841">
+            <rdf:Description rdf:about="#R_MAR03841">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.6.1.52"/>
@@ -152816,18 +152856,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00914c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01974c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00914c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01974c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00916c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01306c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00916c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01306c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG11899"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03843" sboTerm="SBO:0000176" id="MAR03843" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03843" sboTerm="SBO:0000176" id="R_MAR03843" name="O-phospho-L-serine phosphohydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -152836,7 +152876,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03843">
+            <rdf:Description rdf:about="#R_MAR03843">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.3.3"/>
@@ -152850,12 +152890,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00916c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00916c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02896c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02896c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -152864,7 +152904,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03845" sboTerm="SBO:0000176" id="MAR03845" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03845" sboTerm="SBO:0000176" id="R_MAR03845" name="5,10-Methylenetetrahydrofolate:glycine hydroxymethyltransferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -152873,7 +152913,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03845">
+            <rdf:Description rdf:about="#R_MAR03845">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.1.2.1"/>
@@ -152889,19 +152929,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02896c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02980c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02896c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02980c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01045c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01986c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01045c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Shmt"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03847" sboTerm="SBO:0000176" id="MAR03847" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03847" sboTerm="SBO:0000176" id="R_MAR03847" name="Acetyl-CoA:glycine C-acetyltransferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -152909,7 +152949,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03847">
+            <rdf:Description rdf:about="#R_MAR03847">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.29"/>
@@ -152925,18 +152965,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02321m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02321m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01986m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG10361"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03849" sboTerm="SBO:0000176" id="MAR03849" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03849" sboTerm="SBO:0000176" id="R_MAR03849" name="sarcosine:oxygen oxidoreductase (demethylating)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -152944,7 +152984,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03849">
+            <rdf:Description rdf:about="#R_MAR03849">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.5.3.1"/>
@@ -152960,20 +153000,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02880x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02880x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01831x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01986x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02041x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01831x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Sardh"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03856" sboTerm="SBO:0000176" id="MAR03856" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03856" sboTerm="SBO:0000176" id="R_MAR03856" name="(R)-Lactaldehyde:NAD+ oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -152981,7 +153021,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03856">
+            <rdf:Description rdf:about="#R_MAR03856">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.79"/>
@@ -152996,19 +153036,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02475c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02475c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01715c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01715c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG1236"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03860" sboTerm="SBO:0000176" id="MAR03860" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03860" sboTerm="SBO:0000176" id="R_MAR03860" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -153016,7 +153056,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03860">
+            <rdf:Description rdf:about="#R_MAR03860">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/AOBUTDsm"/>
@@ -153029,15 +153069,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02321m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02321m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01332m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01596m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01332m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01596m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03883" sboTerm="SBO:0000176" id="MAR03883" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03883" sboTerm="SBO:0000176" id="R_MAR03883" name="L-serine ammonia-lyase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -153046,7 +153086,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03883">
+            <rdf:Description rdf:about="#R_MAR03883">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.3.1.17"/>
@@ -153061,18 +153101,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02896c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02896c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02578c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02819c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02578c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02819c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Srr"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03901" sboTerm="SBO:0000176" id="MAR03901" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03901" sboTerm="SBO:0000176" id="R_MAR03901" name="S-Adenosyl-L-methionine:glycine N-methyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -153081,7 +153121,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03901">
+            <rdf:Description rdf:about="#R_MAR03901">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.1.1.20"/>
@@ -153097,19 +153137,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01986c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02877c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02877c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02871c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02880c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02871c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02880c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Gnmt"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03939" sboTerm="SBO:0000176" id="MAR03939" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03939" sboTerm="SBO:0000176" id="R_MAR03939" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -153118,7 +153158,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03939">
+            <rdf:Description rdf:about="#R_MAR03939">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.37"/>
@@ -153130,18 +153170,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00630m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00630m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01986m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02944m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02944m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Alas"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03974" sboTerm="SBO:0000176" id="MAR03974" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03974" sboTerm="SBO:0000176" id="R_MAR03974" name="2-aminoacrylate aminohydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -153150,7 +153190,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03974">
+            <rdf:Description rdf:about="#R_MAR03974">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.3.1.17"/>
@@ -153165,19 +153205,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01654c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01654c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02578c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02819c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02578c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02819c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Srr"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04198" sboTerm="SBO:0000176" id="MAR04198" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04198" sboTerm="SBO:0000176" id="R_MAR04198" name="L-Serine:pyruvate aminotransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -153186,7 +153226,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04198">
+            <rdf:Description rdf:about="#R_MAR04198">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.6.1.51"/>
@@ -153199,18 +153239,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02819c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02896c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02819c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02896c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01307c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02154c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01307c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02154c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Agxt"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04199" sboTerm="SBO:0000176" id="MAR04199" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04199" sboTerm="SBO:0000176" id="R_MAR04199" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -153219,7 +153259,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04199">
+            <rdf:Description rdf:about="#R_MAR04199">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.5.1.14"/>
@@ -153231,12 +153271,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02530c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02530c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01252c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01307c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01252c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01307c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -153246,7 +153286,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04200" sboTerm="SBO:0000176" id="MAR04200" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04200" sboTerm="SBO:0000176" id="R_MAR04200" name="L-serine hydro-lyase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -153255,7 +153295,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04200">
+            <rdf:Description rdf:about="#R_MAR04200">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.3.1.17"/>
@@ -153270,17 +153310,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02896c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02896c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01654c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01654c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Srr"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04284" sboTerm="SBO:0000176" id="MAR04284" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04284" sboTerm="SBO:0000176" id="R_MAR04284" name="L-threonine acetaldehyde-lyase (glycine-forming)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -153288,7 +153328,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04284">
+            <rdf:Description rdf:about="#R_MAR04284">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/THRA"/>
@@ -153301,14 +153341,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02993c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02993c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01249c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01986c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01249c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR04466" sboTerm="SBO:0000176" id="MAR04466" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04466" sboTerm="SBO:0000176" id="R_MAR04466" name="hydroxypyruvate aldose-ketose-isomerase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -153316,7 +153356,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04466">
+            <rdf:Description rdf:about="#R_MAR04466">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/5.3.1.22"/>
@@ -153331,16 +153371,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02154c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02154c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00646c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00646c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Gip"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04467" sboTerm="SBO:0000176" id="MAR04467" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04467" sboTerm="SBO:0000176" id="R_MAR04467" name="L-Serine:pyruvate aminotransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -153348,7 +153388,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04467">
+            <rdf:Description rdf:about="#R_MAR04467">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.6.1.51"/>
@@ -153362,18 +153402,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02819x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02896x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02819x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02896x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01307x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02154x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01307x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02154x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Agxt"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04584" sboTerm="SBO:0000176" id="MAR04584" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04584" sboTerm="SBO:0000176" id="R_MAR04584" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -153381,7 +153421,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04584">
+            <rdf:Description rdf:about="#R_MAR04584">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.3.2"/>
@@ -153392,13 +153432,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01619c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01619c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01620c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01620c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -153407,7 +153447,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04696" sboTerm="SBO:0000176" id="MAR04696" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04696" sboTerm="SBO:0000176" id="R_MAR04696" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -153415,7 +153455,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04696">
+            <rdf:Description rdf:about="#R_MAR04696">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.99.1"/>
@@ -153428,13 +153468,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01513c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01513c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01394c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01394c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -153443,7 +153483,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04697" sboTerm="SBO:0000176" id="MAR04697" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04697" sboTerm="SBO:0000176" id="R_MAR04697" name="p-cumic alcohol:NAD+ oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -153452,7 +153492,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04697">
+            <rdf:Description rdf:about="#R_MAR04697">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.2.1.8"/>
@@ -153465,20 +153505,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01394c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01394c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01393c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02553c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01393c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02553c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Aldh7A1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04698" sboTerm="SBO:0000176" id="MAR04698" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04698" sboTerm="SBO:0000176" id="R_MAR04698" name="p-Cumic alcohol:NADP+ oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -153487,7 +153527,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04698">
+            <rdf:Description rdf:about="#R_MAR04698">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.2.1.8"/>
@@ -153500,20 +153540,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01394c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01394c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01393c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01393c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Aldh7A1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04700" sboTerm="SBO:0000176" id="MAR04700" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04700" sboTerm="SBO:0000176" id="R_MAR04700" name="N,N-dimethylglycine,5,6,7,8-tetrahydrofolate:electron-transferflavoprotein oxidoreductase (demethylating,5,10-methylenetetrahydrofolate-forming)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -153521,7 +153561,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04700">
+            <rdf:Description rdf:about="#R_MAR04700">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.5.8.4"/>
@@ -153534,21 +153574,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01831c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02880c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01831c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02880c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01708c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01708c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG3626"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04742" sboTerm="SBO:0000176" id="MAR04742" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04742" sboTerm="SBO:0000176" id="R_MAR04742" name="succinyl-CoA:glycine C-succinyltransferase (decarboxylating)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -153557,7 +153597,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04742">
+            <rdf:Description rdf:about="#R_MAR04742">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.37"/>
@@ -153573,20 +153613,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01986m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02944m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02944m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01074m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01596m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01074m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01596m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Alas"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04788" sboTerm="SBO:0000176" id="MAR04788" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04788" sboTerm="SBO:0000176" id="R_MAR04788" name="L-Alanine:glyoxylate aminotransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -153594,7 +153634,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04788">
+            <rdf:Description rdf:about="#R_MAR04788">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.6.1.44"/>
@@ -153607,12 +153647,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01307m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02007m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01307m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02007m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01986m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02819m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02819m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -153621,7 +153661,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04789" sboTerm="SBO:0000176" id="MAR04789" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04789" sboTerm="SBO:0000176" id="R_MAR04789" name="glycine:oxygen oxidoreductase (deaminating)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -153629,7 +153669,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04789">
+            <rdf:Description rdf:about="#R_MAR04789">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.4.3.3"/>
@@ -153642,21 +153682,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01986x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02007x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02041x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02578x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02007x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02578x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Daao1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04791" sboTerm="SBO:0000176" id="MAR04791" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04791" sboTerm="SBO:0000176" id="R_MAR04791" name="L-Alanine:glyoxylate aminotransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -153664,7 +153704,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04791">
+            <rdf:Description rdf:about="#R_MAR04791">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.6.1.44"/>
@@ -153677,18 +153717,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01307x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02007x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01307x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02007x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01986x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02819x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02819x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Agxt"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04792" sboTerm="SBO:0000176" id="MAR04792" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04792" sboTerm="SBO:0000176" id="R_MAR04792" name="5,10-Methylenetetrahydrofolate:glycine hydroxymethyltransferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -153697,7 +153737,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04792">
+            <rdf:Description rdf:about="#R_MAR04792">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.1.2.1"/>
@@ -153713,19 +153753,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01045m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01986m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01045m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02896m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02980m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02896m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02980m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Shmt"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04937" sboTerm="SBO:0000176" id="MAR04937" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04937" sboTerm="SBO:0000176" id="R_MAR04937" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -153734,7 +153774,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04937">
+            <rdf:Description rdf:about="#R_MAR04937">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.2.2"/>
@@ -153746,15 +153786,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01307c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02026c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01307c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01626c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01930c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01626c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01930c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05392" sboTerm="SBO:0000176" id="MAR05392" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05392" sboTerm="SBO:0000176" id="R_MAR05392" name="Tetrahydrofolate:L-glutamate gamma-ligase (ADP-forming)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -153763,7 +153803,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05392">
+            <rdf:Description rdf:about="#R_MAR05392">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.3.2.17"/>
@@ -153776,21 +153816,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="6" constant="true"/>
-          <speciesReference species="MAM01974c" stoichiometry="6" constant="true"/>
-          <speciesReference species="MAM02980c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="6" constant="true"/>
+          <speciesReference species="M_MAM01974c" stoichiometry="6" constant="true"/>
+          <speciesReference species="M_MAM02980c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="6" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="6" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="6" constant="true"/>
-          <speciesReference species="MAM02981c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="6" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="6" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="6" constant="true"/>
+          <speciesReference species="M_MAM02981c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Fpgs"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05393" sboTerm="SBO:0000176" id="MAR05393" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05393" sboTerm="SBO:0000176" id="R_MAR05393" name="tetrahydropteroyl-poly-gamma-glutamate gamma-glutamylhydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -153799,7 +153839,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05393">
+            <rdf:Description rdf:about="#R_MAR05393">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.4.19.9"/>
@@ -153812,18 +153852,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="6" constant="true"/>
-          <speciesReference species="MAM02981c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="6" constant="true"/>
+          <speciesReference species="M_MAM02981c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01974c" stoichiometry="6" constant="true"/>
-          <speciesReference species="MAM02980c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01974c" stoichiometry="6" constant="true"/>
+          <speciesReference species="M_MAM02980c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="l372Dp"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06409" sboTerm="SBO:0000176" id="MAR06409" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06409" sboTerm="SBO:0000176" id="R_MAR06409" name="Dihydrolipoamide:NAD+ oxidoreductase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -153832,7 +153872,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06409">
+            <rdf:Description rdf:about="#R_MAR06409">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.8.1.4"/>
@@ -153847,13 +153887,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02393m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02393m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01701m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01701m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:and>
@@ -153864,7 +153904,7 @@
           </fbc:and>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07702" sboTerm="SBO:0000176" id="MAR07702" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07702" sboTerm="SBO:0000176" id="R_MAR07702" name="glycolate:NADP+ oxidoreductase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -153872,7 +153912,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07702">
+            <rdf:Description rdf:about="#R_MAR07702">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.79"/>
@@ -153886,19 +153926,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02007c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02007c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01998c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01998c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG1236"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07703" sboTerm="SBO:0000176" id="MAR07703" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07703" sboTerm="SBO:0000176" id="R_MAR07703" name="glycolate:oxygen 2-oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -153906,7 +153946,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07703">
+            <rdf:Description rdf:about="#R_MAR07703">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.3.15"/>
@@ -153919,18 +153959,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01998c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01998c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02007c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02041c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02007c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Hao"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08433" sboTerm="SBO:0000176" id="MAR08433" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08433" sboTerm="SBO:0000176" id="R_MAR08433" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -153938,7 +153978,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08433">
+            <rdf:Description rdf:about="#R_MAR08433">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.8.1.4"/>
@@ -153952,13 +153992,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01986m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02393m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02393m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01596m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02878m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01596m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02878m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:and>
@@ -153969,7 +154009,7 @@
           </fbc:and>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08434" sboTerm="SBO:0000176" id="MAR08434" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08434" sboTerm="SBO:0000176" id="R_MAR08434" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -153977,7 +154017,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08434">
+            <rdf:Description rdf:about="#R_MAR08434">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.8.1.4"/>
@@ -153991,14 +154031,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02878m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02980m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02878m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02980m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01045m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01701m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02578m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01045m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01701m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02578m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:and>
@@ -154009,7 +154049,7 @@
           </fbc:and>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08435" sboTerm="SBO:0000176" id="MAR08435" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08435" sboTerm="SBO:0000176" id="R_MAR08435" name="glycine:lipoylprotein oxidoreductase (decarboxylating and acceptor-aminomethylating)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -154017,7 +154057,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08435">
+            <rdf:Description rdf:about="#R_MAR08435">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.4.4.2"/>
@@ -154032,13 +154072,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01986m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02400m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02400m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01596m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02879m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01596m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02879m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:and>
@@ -154049,7 +154089,7 @@
           </fbc:and>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08436" sboTerm="SBO:0000176" id="MAR08436" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08436" sboTerm="SBO:0000176" id="R_MAR08436" name="[protein]-S8-aminomethyldihydrolipoyllysine:tetrahydrofolate aminomethyltransferase (ammonia-forming)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -154057,7 +154097,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08436">
+            <rdf:Description rdf:about="#R_MAR08436">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.8.1.4"/>
@@ -154073,14 +154113,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02879m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02980m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02879m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02980m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01045m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01703m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02578m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01045m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01703m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02578m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:and>
@@ -154091,7 +154131,7 @@
           </fbc:and>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08437" sboTerm="SBO:0000176" id="MAR08437" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08437" sboTerm="SBO:0000176" id="R_MAR08437" name="dihydrolipoylprotein:NAD+ oxidoreductase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -154099,7 +154139,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08437">
+            <rdf:Description rdf:about="#R_MAR08437">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.8.1.4"/>
@@ -154115,13 +154155,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02400m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02400m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01703m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01703m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:and>
@@ -154132,7 +154172,7 @@
           </fbc:and>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08440" sboTerm="SBO:0000176" id="MAR08440" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08440" sboTerm="SBO:0000176" id="R_MAR08440" name="p-cumic alcohol:NAD+ oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -154140,7 +154180,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08440">
+            <rdf:Description rdf:about="#R_MAR08440">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.2.1.8"/>
@@ -154154,20 +154194,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01394m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01394m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01393m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01393m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Aldh7A1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08441" sboTerm="SBO:0000176" id="MAR08441" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08441" sboTerm="SBO:0000176" id="R_MAR08441" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -154175,7 +154215,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08441">
+            <rdf:Description rdf:about="#R_MAR08441">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.99.1"/>
@@ -154188,12 +154228,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01513m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01802m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01513m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01802m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01394m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01803m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01394m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01803m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -154202,7 +154242,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08442" sboTerm="SBO:0000176" id="MAR08442" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08442" sboTerm="SBO:0000176" id="R_MAR08442" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -154210,7 +154250,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08442">
+            <rdf:Description rdf:about="#R_MAR08442">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.2.7.2"/>
@@ -154223,17 +154263,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00671c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00671c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01596c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02774c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01596c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02774c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09718" sboTerm="SBO:0000176" id="MAR09718" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09718" sboTerm="SBO:0000176" id="R_MAR09718" name="ATP:L-homoserine O-phosphotransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -154241,7 +154281,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09718">
+            <rdf:Description rdf:about="#R_MAR09718">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.1.39"/>
@@ -154254,16 +154294,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02136c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02136c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02655c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02655c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR04426" sboTerm="SBO:0000176" id="MAR04426" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04426" sboTerm="SBO:0000176" id="R_MAR04426" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -154272,7 +154312,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04426">
+            <rdf:Description rdf:about="#R_MAR04426">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.88"/>
@@ -154284,13 +154324,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01259c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01259c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01423c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01423c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -154301,7 +154341,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04428" sboTerm="SBO:0000176" id="MAR04428" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04428" sboTerm="SBO:0000176" id="R_MAR04428" name="L-histidine carboxy-lyase (histamine-forming)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -154310,7 +154350,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04428">
+            <rdf:Description rdf:about="#R_MAR04428">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.1.1.22"/>
@@ -154325,12 +154365,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02125c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02125c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01596c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02124c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01596c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02124c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -154339,7 +154379,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04430" sboTerm="SBO:0000176" id="MAR04430" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04430" sboTerm="SBO:0000176" id="R_MAR04430" name="N-methylhistamine:oxygen oxidoreductase (deaminating)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -154347,7 +154387,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04430">
+            <rdf:Description rdf:about="#R_MAR04430">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.4.3.4"/>
@@ -154362,21 +154402,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02601c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02601c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02041c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02476c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02578c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02476c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02578c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="shps"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04431" sboTerm="SBO:0000176" id="MAR04431" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04431" sboTerm="SBO:0000176" id="R_MAR04431" name="3-Methylimidazole acetaldehyde:NAD+ oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -154384,7 +154424,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04431">
+            <rdf:Description rdf:about="#R_MAR04431">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.2.1.5"/>
@@ -154399,14 +154439,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02476c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02476c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02477c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02477c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -154414,7 +154454,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05336" sboTerm="SBO:0000176" id="MAR05336" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05336" sboTerm="SBO:0000176" id="R_MAR05336" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -154422,7 +154462,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05336">
+            <rdf:Description rdf:about="#R_MAR05336">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.5.1.-"/>
@@ -154433,13 +154473,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02866c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02866c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01974c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01986c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02867c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01974c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02867c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -154453,7 +154493,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05337" sboTerm="SBO:0000176" id="MAR05337" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05337" sboTerm="SBO:0000176" id="R_MAR05337" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -154462,7 +154502,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05337">
+            <rdf:Description rdf:about="#R_MAR05337">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.5.1.-"/>
@@ -154474,11 +154514,11 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02026c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03124c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03124c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02866c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02866c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -154489,7 +154529,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05338" sboTerm="SBO:0000176" id="MAR05338" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05338" sboTerm="SBO:0000176" id="R_MAR05338" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -154498,7 +154538,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05338">
+            <rdf:Description rdf:about="#R_MAR05338">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.199"/>
@@ -154510,16 +154550,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01261c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02867c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02867c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02548c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02548c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05339" sboTerm="SBO:0000176" id="MAR05339" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05339" sboTerm="SBO:0000176" id="R_MAR05339" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -154528,7 +154568,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05339">
+            <rdf:Description rdf:about="#R_MAR05339">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.5.1.-"/>
@@ -154539,12 +154579,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02548c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02548c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01252c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02867c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01252c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02867c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -154558,7 +154598,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05340" sboTerm="SBO:0000176" id="MAR05340" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05340" sboTerm="SBO:0000176" id="R_MAR05340" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -154567,7 +154607,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05340">
+            <rdf:Description rdf:about="#R_MAR05340">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.5.1.-"/>
@@ -154579,12 +154619,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02867c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02867c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02579c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02865c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02579c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02865c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -154598,7 +154638,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08784" sboTerm="SBO:0000176" id="MAR08784" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08784" sboTerm="SBO:0000176" id="R_MAR08784" name="Imidazole acetaldehyde:NAD+ oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -154606,7 +154646,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08784">
+            <rdf:Description rdf:about="#R_MAR08784">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.2.1.3"/>
@@ -154622,14 +154662,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02165c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02165c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02166c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02166c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -154637,7 +154677,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08786" sboTerm="SBO:0000176" id="MAR08786" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08786" sboTerm="SBO:0000176" id="R_MAR08786" name="Imidazole acetaldehyde:NAD+ oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -154645,7 +154685,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08786">
+            <rdf:Description rdf:about="#R_MAR08786">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.2.1.4"/>
@@ -154662,14 +154702,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02165m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02165m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039m" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02166m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02166m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -154678,7 +154718,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04239" sboTerm="SBO:0000176" id="MAR04239" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04239" sboTerm="SBO:0000176" id="R_MAR04239" name="2-oxoadipate dehydrogenase complex" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -154687,7 +154727,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04239">
+            <rdf:Description rdf:about="#R_MAR04239">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.2.4.2"/>
@@ -154703,14 +154743,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00670m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00670m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01596m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01977m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01596m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01977m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:and>
@@ -154720,7 +154760,7 @@
           </fbc:and>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04241" sboTerm="SBO:0000176" id="MAR04241" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04241" sboTerm="SBO:0000176" id="R_MAR04241" name="S-Adenosyl-L-methionine:histone-L-lysine N6-methyltransferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -154728,7 +154768,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04241">
+            <rdf:Description rdf:about="#R_MAR04241">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.1.1.43"/>
@@ -154741,16 +154781,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02129n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02871n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02129n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02871n" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02127n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02877n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02127n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02877n" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR04288" sboTerm="SBO:0000176" id="MAR04288" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04288" sboTerm="SBO:0000176" id="R_MAR04288" name="N6-(L-1,3-Dicarboxypropyl)-L-lysine:NADP+ oxidoreductase (L-lysine-forming)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -154758,7 +154798,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04288">
+            <rdf:Description rdf:about="#R_MAR04288">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.5.1.8"/>
@@ -154772,21 +154812,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01306m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02426m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01306m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02426m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02868m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02868m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="LKRSDH"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04596" sboTerm="SBO:0000176" id="MAR04596" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04596" sboTerm="SBO:0000176" id="R_MAR04596" name="L-2-aminoadipate:2-oxoglutarate aminotransferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -154795,7 +154835,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04596">
+            <rdf:Description rdf:about="#R_MAR04596">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.6.1.39"/>
@@ -154808,18 +154848,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00670c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01974c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00670c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01974c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01306c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02322c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01306c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02322c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG6321"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04597" sboTerm="SBO:0000176" id="MAR04597" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04597" sboTerm="SBO:0000176" id="R_MAR04597" name="L-2-aminoadipate:2-oxoglutarate aminotransferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -154828,7 +154868,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04597">
+            <rdf:Description rdf:about="#R_MAR04597">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.6.1.39"/>
@@ -154841,18 +154881,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00670m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01974m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00670m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01974m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01306m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02322m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01306m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02322m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG6321"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04599" sboTerm="SBO:0000176" id="MAR04599" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04599" sboTerm="SBO:0000176" id="R_MAR04599" name="2-Oxoadipate:lipoamde 2-oxidoreductase(decarboxylating and acceptor-succinylating)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -154861,7 +154901,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04599">
+            <rdf:Description rdf:about="#R_MAR04599">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.2.4.2"/>
@@ -154875,13 +154915,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00670m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02393m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00670m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02393m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01596m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02899m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01596m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02899m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -154890,7 +154930,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04667" sboTerm="SBO:0000176" id="MAR04667" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04667" sboTerm="SBO:0000176" id="R_MAR04667" name="N6-(L-1,3-Dicarboxypropyl)-L-lysine:NAD+ oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -154899,7 +154939,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04667">
+            <rdf:Description rdf:about="#R_MAR04667">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.5.1.9"/>
@@ -154913,15 +154953,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02868m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02868m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00631m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01974m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00631m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01974m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -154931,7 +154971,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04668" sboTerm="SBO:0000176" id="MAR04668" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04668" sboTerm="SBO:0000176" id="R_MAR04668" name="N6-(L-1,3-Dicarboxypropyl)-L-lysine:NADP+ oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -154940,7 +154980,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04668">
+            <rdf:Description rdf:about="#R_MAR04668">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.5.1.10"/>
@@ -154954,21 +154994,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02868m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02868m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00631m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01974m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00631m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01974m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="LKRSDH"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04737" sboTerm="SBO:0000176" id="MAR04737" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04737" sboTerm="SBO:0000176" id="R_MAR04737" name="L-2-aminoadipate-6-semialdehyde:NAD+ 6-oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -154977,7 +155017,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04737">
+            <rdf:Description rdf:about="#R_MAR04737">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.2.1.31"/>
@@ -154990,20 +155030,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00631c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00631c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02322c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02322c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Aldh7A1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04739" sboTerm="SBO:0000176" id="MAR04739" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04739" sboTerm="SBO:0000176" id="R_MAR04739" name="L-2-aminoadipate-6-semialdehyde:NAD+ 6-oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -155011,7 +155051,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04739">
+            <rdf:Description rdf:about="#R_MAR04739">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.2.1.31"/>
@@ -155025,20 +155065,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00631m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00631m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039m" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02322m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02322m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Aldh7A1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04740" sboTerm="SBO:0000176" id="MAR04740" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04740" sboTerm="SBO:0000176" id="R_MAR04740" name="(S)-2-amino-6-oxohexanoate hydro-lyase (spontaneous)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -155047,7 +155087,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04740">
+            <rdf:Description rdf:about="#R_MAR04740">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.17.1"/>
@@ -155060,15 +155100,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00556c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00556c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00631c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00631c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR06415" sboTerm="SBO:0000176" id="MAR06415" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06415" sboTerm="SBO:0000176" id="R_MAR06415" name="Glutaryl-CoA:dihydrolipoamide S-succinyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -155077,7 +155117,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06415">
+            <rdf:Description rdf:about="#R_MAR06415">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.61"/>
@@ -155091,18 +155131,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02899m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02899m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01701m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01977m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01701m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01977m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG5214"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06974" sboTerm="SBO:0000176" id="MAR06974" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06974" sboTerm="SBO:0000176" id="R_MAR06974" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -155110,7 +155150,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#meta_MAR06974">
+            <rdf:Description rdf:about="#meta_R_MAR06974">
               <bqbiol:is>
                 <rdf:Bag/>
               </bqbiol:is>
@@ -155118,15 +155158,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00196c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02426c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00196c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02426c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00204c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00204c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR06975" sboTerm="SBO:0000176" id="MAR06975" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06975" sboTerm="SBO:0000176" id="R_MAR06975" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -155134,7 +155174,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06975">
+            <rdf:Description rdf:about="#R_MAR06975">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.1.1.43"/>
@@ -155147,16 +155187,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00204c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02877c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00204c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02877c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00213c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02871c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00213c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02871c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR06976" sboTerm="SBO:0000176" id="MAR06976" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06976" sboTerm="SBO:0000176" id="R_MAR06976" name="S-adenosyl-L-methionine:cytochrome-c-L-lysine N6-methyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -155164,7 +155204,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06976">
+            <rdf:Description rdf:about="#R_MAR06976">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.1.1.43"/>
@@ -155177,16 +155217,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00213c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02877c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00213c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02877c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00212c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02871c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00212c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02871c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR06977" sboTerm="SBO:0000176" id="MAR06977" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06977" sboTerm="SBO:0000176" id="R_MAR06977" name="S-adenosyl-L-methionine:cytochrome-c-L-lysine N6-methyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -155194,7 +155234,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06977">
+            <rdf:Description rdf:about="#R_MAR06977">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.1.1.43"/>
@@ -155207,16 +155247,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00212c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02877c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00212c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02877c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00211c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02871c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00211c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02871c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR06978" sboTerm="SBO:0000176" id="MAR06978" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06978" sboTerm="SBO:0000176" id="R_MAR06978" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -155224,7 +155264,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06978">
+            <rdf:Description rdf:about="#R_MAR06978">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.4.21.89"/>
@@ -155238,16 +155278,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00211c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00211c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00196c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02517c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00196c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02517c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR06979" sboTerm="SBO:0000176" id="MAR06979" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06979" sboTerm="SBO:0000176" id="R_MAR06979" name="N6,N6,N6-Trimethyl-L-lysine,2-oxoglutarate:oxygen oxidoreductase (3-hydroxylating)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -155255,7 +155295,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06979">
+            <rdf:Description rdf:about="#R_MAR06979">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.11.8"/>
@@ -155268,20 +155308,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01306c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02517c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01306c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02517c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00789c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01596c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02943c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00789c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01596c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02943c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG4335"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06980" sboTerm="SBO:0000176" id="MAR06980" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06980" sboTerm="SBO:0000176" id="R_MAR06980" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -155289,7 +155329,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06980">
+            <rdf:Description rdf:about="#R_MAR06980">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.1.2.1"/>
@@ -155302,18 +155342,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00789c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00789c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01034c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01986c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01034c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Shmt"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06982" sboTerm="SBO:0000176" id="MAR06982" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06982" sboTerm="SBO:0000176" id="R_MAR06982" name="4-Trimethylammoniobutanoate,2-oxoglutarate:oxygen oxidoreductase (3-hydroxylating)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -155321,7 +155361,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06982">
+            <rdf:Description rdf:about="#R_MAR06982">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.4.11.1"/>
@@ -155334,20 +155374,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01306c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01922c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01306c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01922c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01596c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02943c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01596c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02943c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG5321"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06983" sboTerm="SBO:0000176" id="MAR06983" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06983" sboTerm="SBO:0000176" id="R_MAR06983" name="[procollagen]-L-lysine,2-oxoglutarate:oxygen oxidoreductase (5-hydroxylating)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -155355,7 +155395,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06983">
+            <rdf:Description rdf:about="#R_MAR06983">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.11.4"/>
@@ -155369,14 +155409,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00204c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01306c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00204c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01306c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01596c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02767c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02943c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01596c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02767c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02943c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -155385,7 +155425,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06984" sboTerm="SBO:0000176" id="MAR06984" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06984" sboTerm="SBO:0000176" id="R_MAR06984" name="UDP-alpha-D-galactose:procollagen-5-hydroxy-L-lysine D-galactosyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -155393,7 +155433,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06984">
+            <rdf:Description rdf:about="#R_MAR06984">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.50"/>
@@ -155406,13 +155446,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02767c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03107c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02767c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03107c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01036c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01036c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -155421,7 +155461,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06985" sboTerm="SBO:0000176" id="MAR06985" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06985" sboTerm="SBO:0000176" id="R_MAR06985" name="UDPglucose:5-(D-galactosyloxy)-L-lysine-procollagen D-glucosyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -155429,7 +155469,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06985">
+            <rdf:Description rdf:about="#R_MAR06985">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.66"/>
@@ -155442,19 +155482,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01036c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03108c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01036c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03108c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00232c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00232c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Plod"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08017" sboTerm="SBO:0000176" id="MAR08017" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08017" sboTerm="SBO:0000176" id="R_MAR08017" name="L-lysine:oxygen 2-oxidoreductase (deaminating)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -155462,7 +155502,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08017">
+            <rdf:Description rdf:about="#R_MAR08017">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/LYSOXp"/>
@@ -155475,18 +155515,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02426x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02426x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01157x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02041x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02578x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01157x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02578x" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08018" sboTerm="SBO:0000176" id="MAR08018" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08018" sboTerm="SBO:0000176" id="R_MAR08018" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -155494,7 +155534,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08018">
+            <rdf:Description rdf:about="#R_MAR08018">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PPD2CSPp"/>
@@ -155507,14 +155547,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01157x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01157x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01663x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01663x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040x" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08019" sboTerm="SBO:0000176" id="MAR08019" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08019" sboTerm="SBO:0000176" id="R_MAR08019" name="L-pipecolate:NAD+ 2-oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -155522,7 +155562,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08019">
+            <rdf:Description rdf:about="#R_MAR08019">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/1PPDCRp"/>
@@ -155535,16 +155575,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01663x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01663x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02413x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02413x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552x" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08025" sboTerm="SBO:0000176" id="MAR08025" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08025" sboTerm="SBO:0000176" id="R_MAR08025" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -155552,7 +155592,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08025">
+            <rdf:Description rdf:about="#R_MAR08025">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.1.1.43"/>
@@ -155565,16 +155605,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00204n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02877n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00204n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02877n" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02129n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02871n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02129n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02871n" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08026" sboTerm="SBO:0000176" id="MAR08026" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08026" sboTerm="SBO:0000176" id="R_MAR08026" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -155582,7 +155622,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08026">
+            <rdf:Description rdf:about="#R_MAR08026">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.1.1.43"/>
@@ -155595,16 +155635,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02129n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02877n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02129n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02877n" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00212n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02871n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00212n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02871n" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08027" sboTerm="SBO:0000176" id="MAR08027" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08027" sboTerm="SBO:0000176" id="R_MAR08027" name="S-adenosyl-L-methionine:cytochrome-c-L-lysine N6-methyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -155612,7 +155652,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08027">
+            <rdf:Description rdf:about="#R_MAR08027">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.1.1.43"/>
@@ -155626,16 +155666,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00212n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02877n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00212n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02877n" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00211n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02871n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00211n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02871n" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08029" sboTerm="SBO:0000176" id="MAR08029" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08029" sboTerm="SBO:0000176" id="R_MAR08029" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -155643,7 +155683,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08029">
+            <rdf:Description rdf:about="#R_MAR08029">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.4.21.89"/>
@@ -155657,16 +155697,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00211r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00211r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02517r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00196r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02517r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00196r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03164" sboTerm="SBO:0000176" id="MAR03164" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03164" sboTerm="SBO:0000176" id="R_MAR03164" name="(S)-3-hydroxybutanoyl-CoA hydro-lyase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -155675,7 +155715,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03164">
+            <rdf:Description rdf:about="#R_MAR03164">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.17"/>
@@ -155689,14 +155729,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01622m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01622m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00173m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00173m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03166" sboTerm="SBO:0000176" id="MAR03166" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03166" sboTerm="SBO:0000176" id="R_MAR03166" name="(S)-3-Hydroxybutanoyl-CoA:NAD+ oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -155705,7 +155745,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03166">
+            <rdf:Description rdf:about="#R_MAR03166">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.35"/>
@@ -155720,16 +155760,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00173m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00173m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01255m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01255m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03885" sboTerm="SBO:0000176" id="MAR03885" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03885" sboTerm="SBO:0000176" id="R_MAR03885" name="acetyl-CoA:acetyl-CoA C-acetyltransferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -155738,7 +155778,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03885">
+            <rdf:Description rdf:about="#R_MAR03885">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.9"/>
@@ -155754,17 +155794,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01255m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01255m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261m" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01261m" stoichiometry="2" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG10932"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04250" sboTerm="SBO:0000176" id="MAR04250" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04250" sboTerm="SBO:0000176" id="R_MAR04250" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -155772,7 +155812,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04250">
+            <rdf:Description rdf:about="#R_MAR04250">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/QUILSYN"/>
@@ -155785,15 +155825,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00629c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00629c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02822c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02822c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08091" sboTerm="SBO:0000176" id="MAR08091" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08091" sboTerm="SBO:0000176" id="R_MAR08091" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -155801,7 +155841,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08091">
+            <rdf:Description rdf:about="#R_MAR08091">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.1.1.28"/>
@@ -155814,18 +155854,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00788c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00788c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00786c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01596c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00786c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01596c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Ddc"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08092" sboTerm="SBO:0000176" id="MAR08092" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08092" sboTerm="SBO:0000176" id="R_MAR08092" name="3-Hydroxykynurenamine:oxygen oxidoreductase(deaminating)(flavin-containing)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -155833,7 +155873,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08092">
+            <rdf:Description rdf:about="#R_MAR08092">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.4.3.4"/>
@@ -155847,20 +155887,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00786c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00786c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00949c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02041c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02578c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00949c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02578c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="shps"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08563" sboTerm="SBO:0000176" id="MAR08563" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08563" sboTerm="SBO:0000176" id="R_MAR08563" name="Indole-3-acetaldehyde:NAD+ oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -155868,7 +155908,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08563">
+            <rdf:Description rdf:about="#R_MAR08563">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.2.1.4"/>
@@ -155883,14 +155923,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02168m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02168m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039m" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02169m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02169m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -155899,7 +155939,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08564" sboTerm="SBO:0000176" id="MAR08564" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08564" sboTerm="SBO:0000176" id="R_MAR08564" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -155907,7 +155947,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08564">
+            <rdf:Description rdf:about="#R_MAR08564">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.6.1.7"/>
@@ -155920,12 +155960,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01306c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02319c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01306c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02319c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00926c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01974c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00926c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01974c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -155934,7 +155974,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08565" sboTerm="SBO:0000176" id="MAR08565" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08565" sboTerm="SBO:0000176" id="R_MAR08565" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -155942,7 +155982,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08565">
+            <rdf:Description rdf:about="#R_MAR08565">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/KYNATESYN"/>
@@ -155955,14 +155995,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00926c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00926c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00990c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00990c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08566" sboTerm="SBO:0000176" id="MAR08566" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08566" sboTerm="SBO:0000176" id="R_MAR08566" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -155970,7 +156010,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08566">
+            <rdf:Description rdf:about="#R_MAR08566">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.14.1"/>
@@ -155983,21 +156023,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02460c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02460c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01161c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01161c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Cyp18a1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03935" sboTerm="SBO:0000176" id="MAR03935" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03935" sboTerm="SBO:0000176" id="R_MAR03935" name="S-(hydroxymethyl)glutathione formaldehyde-lyase (glutathione-forming)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -156005,7 +156045,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03935">
+            <rdf:Description rdf:about="#R_MAR03935">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.4.1.22"/>
@@ -156020,17 +156060,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01831c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02026c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01831c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02152c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02152c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Hmgcl"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04681" sboTerm="SBO:0000176" id="MAR04681" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04681" sboTerm="SBO:0000176" id="R_MAR04681" name="L-phenylalanine carboxy-lyase (phenylethylamine-forming)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -156038,7 +156078,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04681">
+            <rdf:Description rdf:about="#R_MAR04681">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.1.1.28"/>
@@ -156051,18 +156091,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02724c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02724c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01596c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02718c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01596c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02718c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Ddc"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04682" sboTerm="SBO:0000176" id="MAR04682" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04682" sboTerm="SBO:0000176" id="R_MAR04682" name="Phenethylamine:oxygen oxidoreductase (deaminating)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -156070,7 +156110,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04682">
+            <rdf:Description rdf:about="#R_MAR04682">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.4.3.4"/>
@@ -156085,21 +156125,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02718c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02718c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02041c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02578c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02719c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02578c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02719c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="shps"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04683" sboTerm="SBO:0000176" id="MAR04683" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04683" sboTerm="SBO:0000176" id="R_MAR04683" name="Phenylacetaldehyde:NAD+ oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -156108,7 +156148,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04683">
+            <rdf:Description rdf:about="#R_MAR04683">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.2.1.5"/>
@@ -156122,14 +156162,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02719c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02719c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02553c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02720c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02553c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02720c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -156137,7 +156177,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04685" sboTerm="SBO:0000176" id="MAR04685" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04685" sboTerm="SBO:0000176" id="R_MAR04685" name="Phenylacetaldehyde:NAD+ oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -156146,7 +156186,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04685">
+            <rdf:Description rdf:about="#R_MAR04685">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.2.1.5"/>
@@ -156160,14 +156200,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02719m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02719m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039m" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02720m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02720m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -156175,7 +156215,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04686" sboTerm="SBO:0000176" id="MAR04686" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04686" sboTerm="SBO:0000176" id="R_MAR04686" name="Aldehyde:NADP+ oxidoreductase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -156184,7 +156224,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04686">
+            <rdf:Description rdf:about="#R_MAR04686">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.2.1.5"/>
@@ -156197,14 +156237,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02720c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02720c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02719c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02719c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -156212,7 +156252,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04687" sboTerm="SBO:0000176" id="MAR04687" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04687" sboTerm="SBO:0000176" id="R_MAR04687" name="Aldehyde:NADP+ oxidoreductase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -156221,7 +156261,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04687">
+            <rdf:Description rdf:about="#R_MAR04687">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.2.1.5"/>
@@ -156234,14 +156274,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039m" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02555m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02720m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02555m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02720m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02719m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02719m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -156249,7 +156289,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04702" sboTerm="SBO:0000176" id="MAR04702" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04702" sboTerm="SBO:0000176" id="R_MAR04702" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -156257,7 +156297,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04702">
+            <rdf:Description rdf:about="#R_MAR04702">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.1.1.-"/>
@@ -156270,18 +156310,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02135c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02135c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01596c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01952c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01596c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01952c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR04703" sboTerm="SBO:0000176" id="MAR04703" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04703" sboTerm="SBO:0000176" id="R_MAR04703" name="Gentisate aldehyde:NAD+ oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -156290,7 +156330,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04703">
+            <rdf:Description rdf:about="#R_MAR04703">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.2.1.29"/>
@@ -156303,20 +156343,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01952c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01952c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00576c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02553c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00576c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02553c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="ry"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04704" sboTerm="SBO:0000176" id="MAR04704" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04704" sboTerm="SBO:0000176" id="R_MAR04704" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -156325,7 +156365,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04704">
+            <rdf:Description rdf:about="#R_MAR04704">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.2.3.1"/>
@@ -156338,20 +156378,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01952c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01952c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00576c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02041c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00576c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="ry"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06988" sboTerm="SBO:0000176" id="MAR06988" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06988" sboTerm="SBO:0000176" id="R_MAR06988" name="iodide:hydrogen-peroxide oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -156359,7 +156399,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06988">
+            <rdf:Description rdf:about="#R_MAR06988">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.11.1.8"/>
@@ -156373,19 +156413,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02041c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02174c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02041c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02174c" stoichiometry="2" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02175c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02175c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="cd"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07689" sboTerm="SBO:0000176" id="MAR07689" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07689" sboTerm="SBO:0000176" id="R_MAR07689" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -156393,7 +156433,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07689">
+            <rdf:Description rdf:about="#R_MAR07689">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.8.2.1"/>
@@ -156406,19 +156446,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01736c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02682c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01736c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02682c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01737c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02681c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01737c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02681c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="St1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07701" sboTerm="SBO:0000176" id="MAR07701" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07701" sboTerm="SBO:0000176" id="R_MAR07701" name="NADPH:oxygen oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -156426,7 +156466,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07701">
+            <rdf:Description rdf:about="#R_MAR07701">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.11.1.-"/>
@@ -156443,19 +156483,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02041c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Duox"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08530" sboTerm="SBO:0000176" id="MAR08530" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08530" sboTerm="SBO:0000176" id="R_MAR08530" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -156463,7 +156503,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08530">
+            <rdf:Description rdf:about="#R_MAR08530">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.1"/>
@@ -156476,14 +156516,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01831c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02026c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01831c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01837c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01837c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -156492,7 +156532,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08534" sboTerm="SBO:0000176" id="MAR08534" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08534" sboTerm="SBO:0000176" id="R_MAR08534" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -156500,7 +156540,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08534">
+            <rdf:Description rdf:about="#R_MAR08534">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.8.2.1"/>
@@ -156513,19 +156553,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02682c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03052c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02682c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03052c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00734c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02681c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00734c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02681c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="St1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08535" sboTerm="SBO:0000176" id="MAR08535" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08535" sboTerm="SBO:0000176" id="R_MAR08535" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -156533,7 +156573,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08535">
+            <rdf:Description rdf:about="#R_MAR08535">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.8.2.1"/>
@@ -156546,19 +156586,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02682c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03099c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02682c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03099c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02681c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03100c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02681c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03100c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="St1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08537" sboTerm="SBO:0000176" id="MAR08537" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08537" sboTerm="SBO:0000176" id="R_MAR08537" name="L-tyrosine,tetrahydrobiopterin:oxygen oxidoreductase(3-hydroxylating)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -156566,7 +156606,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08537">
+            <rdf:Description rdf:about="#R_MAR08537">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.16.2"/>
@@ -156580,19 +156620,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02978c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03101c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02978c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03101c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00965c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02354c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00965c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02354c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="ple"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08543" sboTerm="SBO:0000176" id="MAR08543" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08543" sboTerm="SBO:0000176" id="R_MAR08543" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -156600,7 +156640,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08543">
+            <rdf:Description rdf:about="#R_MAR08543">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.11.1.8"/>
@@ -156613,19 +156653,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00807c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02175c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00807c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02175c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00739c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02174c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00739c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02174c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="cd"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08544" sboTerm="SBO:0000176" id="MAR08544" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08544" sboTerm="SBO:0000176" id="R_MAR08544" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -156633,7 +156673,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08544">
+            <rdf:Description rdf:about="#R_MAR08544">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.11.1.8"/>
@@ -156646,19 +156686,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02175c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03101c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02175c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03101c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00807c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02174c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00807c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02174c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="cd"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08540" sboTerm="SBO:0000176" id="MAR08540" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08540" sboTerm="SBO:0000176" id="R_MAR08540" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -156666,7 +156706,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08540">
+            <rdf:Description rdf:about="#R_MAR08540">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/TYRASE"/>
@@ -156678,16 +156718,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01053c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03163c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01053c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03163c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02458c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02458c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09733" sboTerm="SBO:0000176" id="MAR09733" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09733" sboTerm="SBO:0000176" id="R_MAR09733" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -156695,7 +156735,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09733">
+            <rdf:Description rdf:about="#R_MAR09733">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R03674"/>
@@ -156707,15 +156747,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02355c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02355c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01596c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03162c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01596c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03162c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03206" sboTerm="SBO:0000176" id="MAR03206" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03206" sboTerm="SBO:0000176" id="R_MAR03206" name="acetyl-CoA:propanoyl-CoA 2-C-acetyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -156724,7 +156764,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03206">
+            <rdf:Description rdf:about="#R_MAR03206">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.16"/>
@@ -156738,15 +156778,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00662m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00662m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02774m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02774m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03211" sboTerm="SBO:0000176" id="MAR03211" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03211" sboTerm="SBO:0000176" id="R_MAR03211" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -156755,7 +156795,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03211">
+            <rdf:Description rdf:about="#R_MAR03211">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.8.7"/>
@@ -156768,18 +156808,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02774m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03103m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02774m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03103m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01265m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03102m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01265m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03102m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Mcad"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03747" sboTerm="SBO:0000176" id="MAR03747" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03747" sboTerm="SBO:0000176" id="R_MAR03747" name="L-Valine:2-oxoglutarate aminotransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -156787,7 +156827,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03747">
+            <rdf:Description rdf:about="#R_MAR03747">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.6.1.42"/>
@@ -156801,18 +156841,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01306c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03135c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01306c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03135c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00824c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01974c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00824c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01974c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG1673"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03744" sboTerm="SBO:0000176" id="MAR03744" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03744" sboTerm="SBO:0000176" id="R_MAR03744" name="L-Valine:2-oxoglutarate aminotransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -156821,7 +156861,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03744">
+            <rdf:Description rdf:about="#R_MAR03744">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.6.1.42"/>
@@ -156835,18 +156875,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01306m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03135m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01306m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03135m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00824m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01974m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00824m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01974m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG1673"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03757" sboTerm="SBO:0000176" id="MAR03757" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03757" sboTerm="SBO:0000176" id="R_MAR03757" name="3-Hydroxy-2-methylpropanoate:NAD+ oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -156855,7 +156895,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03757">
+            <rdf:Description rdf:about="#R_MAR03757">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.31"/>
@@ -156870,13 +156910,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00784m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00784m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00661m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00661m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -156885,7 +156925,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03761" sboTerm="SBO:0000176" id="MAR03761" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03761" sboTerm="SBO:0000176" id="R_MAR03761" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -156894,7 +156934,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03761">
+            <rdf:Description rdf:about="#R_MAR03761">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.2.1.18"/>
@@ -156909,20 +156949,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00661m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00661m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00166m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00166m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG17896"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03777" sboTerm="SBO:0000176" id="MAR03777" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03777" sboTerm="SBO:0000176" id="R_MAR03777" name="L-Leucine:2-oxoglutarate aminotransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -156930,7 +156970,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03777">
+            <rdf:Description rdf:about="#R_MAR03777">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.6.1.42"/>
@@ -156944,18 +156984,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01306c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02184c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01306c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02184c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00669c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01974c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00669c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01974c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG1673"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03778" sboTerm="SBO:0000176" id="MAR03778" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03778" sboTerm="SBO:0000176" id="R_MAR03778" name="L-Leucine:2-oxoglutarate aminotransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -156964,7 +157004,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03778">
+            <rdf:Description rdf:about="#R_MAR03778">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.6.1.42"/>
@@ -156979,18 +157019,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01306m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02184m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01306m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02184m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00669m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01974m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00669m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01974m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG1673"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03795" sboTerm="SBO:0000176" id="MAR03795" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03795" sboTerm="SBO:0000176" id="R_MAR03795" name="2-Methyl-3-oxopropanoate:NAD+ oxidoreductase (CoA-propanoylating)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -156999,7 +157039,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03795">
+            <rdf:Description rdf:about="#R_MAR03795">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.2.1.27"/>
@@ -157013,20 +157053,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00661m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00661m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01596m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02774m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01596m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02774m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG17896"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04797" sboTerm="SBO:0000176" id="MAR04797" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04797" sboTerm="SBO:0000176" id="R_MAR04797" name="(S)-Methylmalonate semialdehyde:NAD+ oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -157035,7 +157075,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04797">
+            <rdf:Description rdf:about="#R_MAR04797">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.2.1.3"/>
@@ -157049,14 +157089,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00661c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00661c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02479c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02479c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -157064,7 +157104,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06417" sboTerm="SBO:0000176" id="MAR06417" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06417" sboTerm="SBO:0000176" id="R_MAR06417" name="2-methylpropanoyl-CoA:enzyme N6-(dihydrolipoyl)lysine S-(2-methylpropanoyl)transferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -157073,7 +157113,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06417">
+            <rdf:Description rdf:about="#R_MAR06417">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.168"/>
@@ -157088,18 +157128,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02857m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02857m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01701m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02180m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01701m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02180m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Dbct"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06419" sboTerm="SBO:0000176" id="MAR06419" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06419" sboTerm="SBO:0000176" id="R_MAR06419" name="(S)-3-Methyl-2-oxopentanoate:[dihydrolipoyllysine-residue (2-methylpropanoyl)transferase] lipoyllysine 2-oxidoreductase (decarboxylating, acceptor-2-methylpropanoylating)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -157108,7 +157148,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06419">
+            <rdf:Description rdf:about="#R_MAR06419">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.2.4.4"/>
@@ -157122,13 +157162,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00669m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02393m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00669m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02393m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01596m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02856m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01596m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02856m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:and>
@@ -157137,7 +157177,7 @@
           </fbc:and>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06420" sboTerm="SBO:0000176" id="MAR06420" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06420" sboTerm="SBO:0000176" id="R_MAR06420" name="(S)-2-methylbutanoyl-CoA:enzyme N6-(dihydrolipoyl)lysine S-(2-methylbutanoyl)transferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -157146,7 +157186,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06420">
+            <rdf:Description rdf:about="#R_MAR06420">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.168"/>
@@ -157160,18 +157200,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02856m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02856m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00663m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01701m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00663m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01701m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Dbct"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06421" sboTerm="SBO:0000176" id="MAR06421" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06421" sboTerm="SBO:0000176" id="R_MAR06421" name="4-methyl-2-oxopentanoate:[dihydrolipoyllysine-residue (2-methylpropanoyl)transferase] lipoyllysine 2-oxidoreductase (decarboxylating, acceptor-2-methylpropanoylating)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -157180,7 +157220,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06421">
+            <rdf:Description rdf:about="#R_MAR06421">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.2.4.4"/>
@@ -157194,13 +157234,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01013m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02393m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01013m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02393m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01596m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02858m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01596m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02858m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:and>
@@ -157209,7 +157249,7 @@
           </fbc:and>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06422" sboTerm="SBO:0000176" id="MAR06422" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06422" sboTerm="SBO:0000176" id="R_MAR06422" name="3-methylbutanoyl-CoA:enzyme N6-(dihydrolipoyl)lysine S-(3-methylbutanoyl)transferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -157218,7 +157258,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06422">
+            <rdf:Description rdf:about="#R_MAR06422">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.168"/>
@@ -157232,18 +157272,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02858m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02858m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01701m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02189m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01701m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02189m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Dbct"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06923" sboTerm="SBO:0000176" id="MAR06923" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06923" sboTerm="SBO:0000176" id="R_MAR06923" name="L-Leucine:2-oxoglutarate aminotransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -157251,7 +157291,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06923">
+            <rdf:Description rdf:about="#R_MAR06923">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.6.1.42"/>
@@ -157266,18 +157306,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01306c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02360c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01306c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02360c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01013c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01974c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01013c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01974c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG1673"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03765" sboTerm="SBO:0000176" id="MAR03765" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03765" sboTerm="SBO:0000176" id="R_MAR03765" name="L-Leucine:2-oxoglutarate aminotransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -157286,7 +157326,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03765">
+            <rdf:Description rdf:about="#R_MAR03765">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.6.1.42"/>
@@ -157301,18 +157341,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01306m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02360m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01306m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02360m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01013m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01974m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01013m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01974m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG1673"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06925" sboTerm="SBO:0000176" id="MAR06925" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06925" sboTerm="SBO:0000176" id="R_MAR06925" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -157321,7 +157361,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06925">
+            <rdf:Description rdf:about="#R_MAR06925">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.-"/>
@@ -157333,13 +157373,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01013c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01013c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01325c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01325c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -157364,7 +157404,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06926" sboTerm="SBO:0000176" id="MAR06926" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06926" sboTerm="SBO:0000176" id="R_MAR06926" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -157373,7 +157413,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06926">
+            <rdf:Description rdf:about="#R_MAR06926">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.4.1.4"/>
@@ -157385,15 +157425,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00667m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01285m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00667m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01371m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02999m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02999m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:and>
@@ -157402,7 +157442,7 @@
           </fbc:and>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06927" sboTerm="SBO:0000176" id="MAR06927" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06927" sboTerm="SBO:0000176" id="R_MAR06927" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -157411,7 +157451,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06927">
+            <rdf:Description rdf:about="#R_MAR06927">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.4.1.4"/>
@@ -157423,13 +157463,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00666m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00666m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00667m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00667m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:and>
@@ -157438,7 +157478,7 @@
           </fbc:and>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08088" sboTerm="SBO:0000176" id="MAR08088" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08088" sboTerm="SBO:0000176" id="R_MAR08088" name="L-3-amino-isobutanoate:2-oxoglutarate aminotransferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -157446,7 +157486,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08088">
+            <rdf:Description rdf:about="#R_MAR08088">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.6.1.22"/>
@@ -157461,18 +157501,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00661m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01974m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00661m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01974m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01306m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02325m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01306m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02325m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Gabat"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03743" sboTerm="SBO:0000176" id="MAR03743" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03743" sboTerm="SBO:0000176" id="R_MAR03743" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -157481,7 +157521,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03743">
+            <rdf:Description rdf:about="#R_MAR03743">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.13"/>
@@ -157493,13 +157533,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02558m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02558m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01364m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01986m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01364m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -157508,7 +157548,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03940" sboTerm="SBO:0000176" id="MAR03940" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03940" sboTerm="SBO:0000176" id="R_MAR03940" name="L-Phenylalanine,tetrahydrobiopterin:oxygen oxidoreductase (4-hydroxylating)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -157517,7 +157557,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03940">
+            <rdf:Description rdf:about="#R_MAR03940">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.16.1"/>
@@ -157532,20 +157572,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02724c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02978c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02724c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02978c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01698c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03101c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01698c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03101c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Hn"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04214" sboTerm="SBO:0000176" id="MAR04214" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04214" sboTerm="SBO:0000176" id="R_MAR04214" name="L-tryptophan:oxygen 2,3-oxidoreductase (decyclizing)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -157554,7 +157594,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04214">
+            <rdf:Description rdf:about="#R_MAR04214">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.13.11.11"/>
@@ -157569,17 +157609,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03089c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03089c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02371c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="v"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04220" sboTerm="SBO:0000176" id="MAR04220" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04220" sboTerm="SBO:0000176" id="R_MAR04220" name="L-Kynurenine,NADPH:oxygen oxidoreductase (3-hydroxylating)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -157587,7 +157627,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04220">
+            <rdf:Description rdf:about="#R_MAR04220">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.13.9"/>
@@ -157603,21 +157643,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00788c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00788c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02319c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02319c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="cn"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04222" sboTerm="SBO:0000176" id="MAR04222" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04222" sboTerm="SBO:0000176" id="R_MAR04222" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -157626,7 +157666,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04222">
+            <rdf:Description rdf:about="#R_MAR04222">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.6.1.7"/>
@@ -157637,13 +157677,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00990c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01974c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00990c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01974c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01306c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02319c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01306c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02319c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -157652,7 +157692,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04227" sboTerm="SBO:0000176" id="MAR04227" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04227" sboTerm="SBO:0000176" id="R_MAR04227" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -157660,7 +157700,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04227">
+            <rdf:Description rdf:about="#R_MAR04227">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.11.1.6"/>
@@ -157673,20 +157713,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00775c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM00775c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="4" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01572c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="4" constant="true"/>
-          <speciesReference species="MAM02041c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02631c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01572c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM02041c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02631c" stoichiometry="2" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Cat"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04232" sboTerm="SBO:0000176" id="MAR04232" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04232" sboTerm="SBO:0000176" id="R_MAR04232" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -157695,7 +157735,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04232">
+            <rdf:Description rdf:about="#R_MAR04232">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR103449"/>
@@ -157706,15 +157746,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00633c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00633c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02752c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02752c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR04233" sboTerm="SBO:0000176" id="MAR04233" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04233" sboTerm="SBO:0000176" id="R_MAR04233" name="2-Aminomuconate semialdehyde:NAD+ 6-oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -157722,7 +157762,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04233">
+            <rdf:Description rdf:about="#R_MAR04233">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.2.1.32"/>
@@ -157735,17 +157775,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00633c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00633c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00634c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02553c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00634c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02553c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR04235" sboTerm="SBO:0000176" id="MAR04235" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04235" sboTerm="SBO:0000176" id="R_MAR04235" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -157753,7 +157793,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04235">
+            <rdf:Description rdf:about="#R_MAR04235">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.5.1.-"/>
@@ -157767,17 +157807,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00634c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00634c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00670c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02578c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00670c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02578c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR04242" sboTerm="SBO:0000176" id="MAR04242" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04242" sboTerm="SBO:0000176" id="R_MAR04242" name="glutaryl-CoA:electron-transfer flavoprotein 2,3-oxidoreductase (decarboxylating)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -157786,7 +157826,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04242">
+            <rdf:Description rdf:about="#R_MAR04242">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.8.6"/>
@@ -157799,20 +157839,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01977m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03103m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01977m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03103m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01596m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01622m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03102m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01596m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01622m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03102m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG9547"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04243" sboTerm="SBO:0000176" id="MAR04243" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04243" sboTerm="SBO:0000176" id="R_MAR04243" name="glutaryl-CoA:electron-transfer flavoprotein 2,3-oxidoreductase (decarboxylating)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -157820,7 +157860,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04243">
+            <rdf:Description rdf:about="#R_MAR04243">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.8.6"/>
@@ -157833,20 +157873,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01802m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01977m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01802m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01977m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01596m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01622m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01803m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01596m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01622m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01803m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG9547"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04244" sboTerm="SBO:0000176" id="MAR04244" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04244" sboTerm="SBO:0000176" id="R_MAR04244" name="3-hydroxy-L-kynurenine:2-oxoglutarate aminotransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -157855,7 +157895,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04244">
+            <rdf:Description rdf:about="#R_MAR04244">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.6.1.7"/>
@@ -157870,12 +157910,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00788c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01306c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00788c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01306c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00924c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01974c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00924c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01974c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -157884,7 +157924,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04245" sboTerm="SBO:0000176" id="MAR04245" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04245" sboTerm="SBO:0000176" id="R_MAR04245" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -157893,7 +157933,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04245">
+            <rdf:Description rdf:about="#R_MAR04245">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R03954"/>
@@ -157908,14 +157948,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00924c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00924c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03151c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03151c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR04246" sboTerm="SBO:0000176" id="MAR04246" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04246" sboTerm="SBO:0000176" id="R_MAR04246" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -157924,7 +157964,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04246">
+            <rdf:Description rdf:about="#R_MAR04246">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.6.1.7"/>
@@ -157935,13 +157975,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00788c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01306c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00788c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01306c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01974c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03151c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01974c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03151c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -157950,7 +157990,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04248" sboTerm="SBO:0000176" id="MAR04248" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04248" sboTerm="SBO:0000176" id="R_MAR04248" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -157959,7 +157999,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04248">
+            <rdf:Description rdf:about="#R_MAR04248">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR103700"/>
@@ -157970,14 +158010,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02667c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02667c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03151c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03151c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR06707" sboTerm="SBO:0000176" id="MAR06707" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06707" sboTerm="SBO:0000176" id="R_MAR06707" name="L-tryptophan decarboxy-lyase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -157985,7 +158025,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06707">
+            <rdf:Description rdf:about="#R_MAR06707">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.1.1.28"/>
@@ -157998,18 +158038,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03089c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03089c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01596c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03088c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01596c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03088c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Ddc"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06708" sboTerm="SBO:0000176" id="MAR06708" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06708" sboTerm="SBO:0000176" id="R_MAR06708" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -158018,7 +158058,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06708">
+            <rdf:Description rdf:about="#R_MAR06708">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR103684"/>
@@ -158029,15 +158069,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00221c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00221c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02453c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03089c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02453c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03089c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR06709" sboTerm="SBO:0000176" id="MAR06709" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06709" sboTerm="SBO:0000176" id="R_MAR06709" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -158045,7 +158085,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06709">
+            <rdf:Description rdf:about="#R_MAR06709">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_6709"/>
@@ -158055,14 +158095,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01384c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01384c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03089c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03089c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR06710" sboTerm="SBO:0000176" id="MAR06710" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06710" sboTerm="SBO:0000176" id="R_MAR06710" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -158071,7 +158111,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06710">
+            <rdf:Description rdf:about="#R_MAR06710">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.1.1.-"/>
@@ -158083,13 +158123,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01384c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02877c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01384c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02877c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02045c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02871c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02045c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02871c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -158102,7 +158142,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06712" sboTerm="SBO:0000176" id="MAR06712" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06712" sboTerm="SBO:0000176" id="R_MAR06712" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -158111,7 +158151,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06712">
+            <rdf:Description rdf:about="#R_MAR06712">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR103615"/>
@@ -158122,15 +158162,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00230c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00230c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01831c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03088c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01831c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03088c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR06713" sboTerm="SBO:0000176" id="MAR06713" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06713" sboTerm="SBO:0000176" id="R_MAR06713" name="Tryptamine:oxygen oxidoreductase(deaminating)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -158138,7 +158178,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06713">
+            <rdf:Description rdf:about="#R_MAR06713">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.4.3.4"/>
@@ -158152,21 +158192,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03088c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03088c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02041c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02168c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02578c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02168c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02578c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="shps"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06714" sboTerm="SBO:0000176" id="MAR06714" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06714" sboTerm="SBO:0000176" id="R_MAR06714" name="Indole-3-acetaldehyde:NAD+ oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -158174,7 +158214,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06714">
+            <rdf:Description rdf:about="#R_MAR06714">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.2.1.3"/>
@@ -158187,14 +158227,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02168c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02168c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02169c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02169c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -158202,7 +158242,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06718" sboTerm="SBO:0000176" id="MAR06718" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06718" sboTerm="SBO:0000176" id="R_MAR06718" name="5-Hydroxykynurenamine decarboxy-lyase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -158210,7 +158250,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06718">
+            <rdf:Description rdf:about="#R_MAR06718">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.1.1.28"/>
@@ -158223,18 +158263,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01106c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01106c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01105c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01596c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01105c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01596c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Ddc"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06719" sboTerm="SBO:0000176" id="MAR06719" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06719" sboTerm="SBO:0000176" id="R_MAR06719" name="5-Hydroxykynurenamine:oxygen oxidoreductase(deaminating)(flavin-containing)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -158242,7 +158282,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06719">
+            <rdf:Description rdf:about="#R_MAR06719">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.4.3.4"/>
@@ -158257,20 +158297,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01105c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01105c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00947c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02041c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02578c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00947c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02578c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="shps"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06720" sboTerm="SBO:0000176" id="MAR06720" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06720" sboTerm="SBO:0000176" id="R_MAR06720" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -158278,7 +158318,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06720">
+            <rdf:Description rdf:about="#R_MAR06720">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_6720"/>
@@ -158288,16 +158328,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02319c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03109c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02319c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03109c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00787c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00787c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR06721" sboTerm="SBO:0000176" id="MAR06721" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06721" sboTerm="SBO:0000176" id="R_MAR06721" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -158306,7 +158346,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06721">
+            <rdf:Description rdf:about="#R_MAR06721">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.5.4.-"/>
@@ -158318,16 +158358,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00787c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00787c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00925c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02578c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00925c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02578c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR06722" sboTerm="SBO:0000176" id="MAR06722" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06722" sboTerm="SBO:0000176" id="R_MAR06722" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -158336,7 +158376,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06722">
+            <rdf:Description rdf:about="#R_MAR06722">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.6.1.-"/>
@@ -158348,19 +158388,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00787c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01306c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00787c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01306c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01974c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03152c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01974c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03152c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Got1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06723" sboTerm="SBO:0000176" id="MAR06723" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06723" sboTerm="SBO:0000176" id="R_MAR06723" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -158369,7 +158409,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06723">
+            <rdf:Description rdf:about="#R_MAR06723">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.5.1.18"/>
@@ -158381,12 +158421,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00787c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02026c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00787c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01979c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01979c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -158400,7 +158440,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06725" sboTerm="SBO:0000176" id="MAR06725" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06725" sboTerm="SBO:0000176" id="R_MAR06725" name="L-Phenylalanine:2-oxoglutarate aminotransferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -158408,7 +158448,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06725">
+            <rdf:Description rdf:about="#R_MAR06725">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.6.1.1"/>
@@ -158424,12 +158464,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01306c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02724c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01306c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02724c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01974c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02725c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01974c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02725c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -158439,7 +158479,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06726" sboTerm="SBO:0000176" id="MAR06726" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06726" sboTerm="SBO:0000176" id="R_MAR06726" name="Phenylpyruvate:oxygen oxidoreductase (hydroxylating,decarboxylating)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -158447,7 +158487,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06726">
+            <rdf:Description rdf:about="#R_MAR06726">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.13.11.27"/>
@@ -158460,18 +158500,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02725c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02725c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00654c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01596c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00654c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01596c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Hpd"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06728" sboTerm="SBO:0000176" id="MAR06728" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06728" sboTerm="SBO:0000176" id="R_MAR06728" name="L-Tyrosine,tetrahydrobiopterin:oxygen oxidoreductase (3-hydroxylating)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -158479,7 +158519,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06728">
+            <rdf:Description rdf:about="#R_MAR06728">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.16.2"/>
@@ -158493,20 +158533,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02978c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03101c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02978c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03101c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01698c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02354c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01698c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02354c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="ple"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06731" sboTerm="SBO:0000176" id="MAR06731" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06731" sboTerm="SBO:0000176" id="R_MAR06731" name="3,4-Dihydroxy-L-phenylalanine carboxy-lyase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -158514,7 +158554,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06731">
+            <rdf:Description rdf:about="#R_MAR06731">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.1.1.28"/>
@@ -158529,18 +158569,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02354c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02354c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01596c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01736c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01596c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01736c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Ddc"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06734" sboTerm="SBO:0000176" id="MAR06734" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06734" sboTerm="SBO:0000176" id="R_MAR06734" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -158549,7 +158589,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06734">
+            <rdf:Description rdf:about="#R_MAR06734">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR103573"/>
@@ -158560,15 +158600,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02875c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02875c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01249c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01736c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01249c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01736c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR06737" sboTerm="SBO:0000176" id="MAR06737" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06737" sboTerm="SBO:0000176" id="R_MAR06737" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -158577,7 +158617,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06737">
+            <rdf:Description rdf:about="#R_MAR06737">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.1.1.-"/>
@@ -158589,13 +158629,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02875c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02877c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02875c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02877c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00156c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02871c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00156c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02871c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -158608,7 +158648,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06738" sboTerm="SBO:0000176" id="MAR06738" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06738" sboTerm="SBO:0000176" id="R_MAR06738" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -158617,7 +158657,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06738">
+            <rdf:Description rdf:about="#R_MAR06738">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR103574"/>
@@ -158628,15 +158668,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02876c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02876c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01736c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02819c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01736c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02819c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR06740" sboTerm="SBO:0000176" id="MAR06740" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06740" sboTerm="SBO:0000176" id="R_MAR06740" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -158645,7 +158685,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06740">
+            <rdf:Description rdf:about="#R_MAR06740">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.1.1.28"/>
@@ -158657,18 +158697,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02876c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02876c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00231c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01596c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM00231c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01596c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="2" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Ddc"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06741" sboTerm="SBO:0000176" id="MAR06741" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06741" sboTerm="SBO:0000176" id="R_MAR06741" name="dopamine,ascorbate:oxygen oxidoreductase (beta-hydroxylating)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -158676,7 +158716,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06741">
+            <rdf:Description rdf:about="#R_MAR06741">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.17.1"/>
@@ -158689,20 +158729,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01368c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01736c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01368c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01736c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01655c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02617c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01655c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02617c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Tbh"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06742" sboTerm="SBO:0000176" id="MAR06742" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06742" sboTerm="SBO:0000176" id="R_MAR06742" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -158711,7 +158751,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06742">
+            <rdf:Description rdf:about="#R_MAR06742">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR103619"/>
@@ -158722,15 +158762,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00945c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00945c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01831c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02617c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01831c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02617c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR06744" sboTerm="SBO:0000176" id="MAR06744" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06744" sboTerm="SBO:0000176" id="R_MAR06744" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -158739,7 +158779,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06744">
+            <rdf:Description rdf:about="#R_MAR06744">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR103618"/>
@@ -158750,16 +158790,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02599c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02599c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01290c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01831c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01290c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01831c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR06745" sboTerm="SBO:0000176" id="MAR06745" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06745" sboTerm="SBO:0000176" id="R_MAR06745" name="4-[(1R)-1-Hydroxy-2-(methylamino)ethyl]-1,2-benzenediol:oxygen oxidoreductase(deaminating)(flavin-containing)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -158767,7 +158807,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06745">
+            <rdf:Description rdf:about="#R_MAR06745">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.4.3.4"/>
@@ -158780,20 +158820,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01290c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01290c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00726c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02041c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02473c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00726c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02473c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="shps"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06747" sboTerm="SBO:0000176" id="MAR06747" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06747" sboTerm="SBO:0000176" id="R_MAR06747" name="L-Metanephrine:oxygen oxidoreductase (deaminating) (flavin-containing)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -158801,7 +158841,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06747">
+            <rdf:Description rdf:about="#R_MAR06747">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.4.3.4"/>
@@ -158814,20 +158854,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02407c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02407c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00820c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02041c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02473c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00820c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02473c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="shps"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06748" sboTerm="SBO:0000176" id="MAR06748" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06748" sboTerm="SBO:0000176" id="R_MAR06748" name="3-Methoxy-4-hydroxyphenylglycolaldehyde:NAD+ oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -158836,7 +158876,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06748">
+            <rdf:Description rdf:about="#R_MAR06748">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.2.1.5"/>
@@ -158850,14 +158890,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00820c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00820c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02553c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03136c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02553c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03136c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -158865,7 +158905,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06749" sboTerm="SBO:0000176" id="MAR06749" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06749" sboTerm="SBO:0000176" id="R_MAR06749" name="3-Methoxy-4-hydroxyphenylglycolaldehyde:NADP+ oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -158874,7 +158914,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06749">
+            <rdf:Description rdf:about="#R_MAR06749">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.2.1.5"/>
@@ -158888,14 +158928,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00820c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00820c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03136c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03136c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -158903,7 +158943,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06751" sboTerm="SBO:0000176" id="MAR06751" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06751" sboTerm="SBO:0000176" id="R_MAR06751" name="L-Normetanephrine:oxygen oxidoreductase (deaminating) (copper-containing)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -158911,7 +158951,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06751">
+            <rdf:Description rdf:about="#R_MAR06751">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.4.3.4"/>
@@ -158926,21 +158966,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02622c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02622c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00820c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02041c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02578c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00820c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02578c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="shps"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06752" sboTerm="SBO:0000176" id="MAR06752" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06752" sboTerm="SBO:0000176" id="R_MAR06752" name="4-[(1R)-2-Amino-1-hydroxyethyl]-1,2-benzenediol:oxygen oxidoreductase(deaminating)(flavin-containing)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -158948,7 +158988,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06752">
+            <rdf:Description rdf:about="#R_MAR06752">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.4.3.4"/>
@@ -158962,21 +159002,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02617c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02617c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00726c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02041c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02578c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00726c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02578c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="shps"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06753" sboTerm="SBO:0000176" id="MAR06753" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06753" sboTerm="SBO:0000176" id="R_MAR06753" name="3,4-Dihydroxymandelaldehyde:NAD+ oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -158985,7 +159025,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06753">
+            <rdf:Description rdf:about="#R_MAR06753">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.2.1.5"/>
@@ -158999,14 +159039,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00726c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00726c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00727c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02553c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00727c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02553c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -159014,7 +159054,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06754" sboTerm="SBO:0000176" id="MAR06754" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06754" sboTerm="SBO:0000176" id="R_MAR06754" name="3,4-Dihydroxymandelaldehyde:NADP+ oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -159023,7 +159063,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06754">
+            <rdf:Description rdf:about="#R_MAR06754">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.2.1.5"/>
@@ -159037,14 +159077,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00726c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00726c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00727c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00727c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -159052,7 +159092,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06756" sboTerm="SBO:0000176" id="MAR06756" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06756" sboTerm="SBO:0000176" id="R_MAR06756" name="3,4-dihydroxyphenylethyleneglycol:NAD+ oxidoreductase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -159060,7 +159100,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06756">
+            <rdf:Description rdf:about="#R_MAR06756">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.1"/>
@@ -159075,13 +159115,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00726c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00726c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00730c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00730c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -159090,7 +159130,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06758" sboTerm="SBO:0000176" id="MAR06758" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06758" sboTerm="SBO:0000176" id="R_MAR06758" name="4-(2-aminoethyl)-1,2-benzenediol:oxygen oxidoreductase(deaminating)(flavin-containing)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -159098,7 +159138,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06758">
+            <rdf:Description rdf:about="#R_MAR06758">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.4.3.4"/>
@@ -159115,21 +159155,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01736c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01736c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00728c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02041c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02578c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00728c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02578c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="shps"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06759" sboTerm="SBO:0000176" id="MAR06759" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06759" sboTerm="SBO:0000176" id="R_MAR06759" name="3,4-Dihydroxyphenylacetaldehyde hydro-lyase (adding dopamine)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -159138,7 +159178,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06759">
+            <rdf:Description rdf:about="#R_MAR06759">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.78"/>
@@ -159152,15 +159192,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00728c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01736c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00728c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01736c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02621c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02621c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR06760" sboTerm="SBO:0000176" id="MAR06760" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06760" sboTerm="SBO:0000176" id="R_MAR06760" name="3,4-dihydroxyphenylacetaldehyde:NAD+ oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -159168,7 +159208,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06760">
+            <rdf:Description rdf:about="#R_MAR06760">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.2.1.5"/>
@@ -159181,14 +159221,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00728c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00728c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00729c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02553c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00729c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02553c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -159196,7 +159236,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06761" sboTerm="SBO:0000176" id="MAR06761" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06761" sboTerm="SBO:0000176" id="R_MAR06761" name="3,4-Dihydroxyphenylacetaldehyde:NADP+ oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -159204,7 +159244,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06761">
+            <rdf:Description rdf:about="#R_MAR06761">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.2.1.5"/>
@@ -159217,14 +159257,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00728c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00728c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00729c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00729c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -159232,7 +159272,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06764" sboTerm="SBO:0000176" id="MAR06764" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06764" sboTerm="SBO:0000176" id="R_MAR06764" name="3-Methoxytyramine:oxygen oxidoreductase (deaminating) (copper-containing)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -159240,7 +159280,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06764">
+            <rdf:Description rdf:about="#R_MAR06764">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.4.3.4"/>
@@ -159254,21 +159294,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00821c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00821c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00818c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02041c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02578c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00818c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02578c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="shps"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06765" sboTerm="SBO:0000176" id="MAR06765" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06765" sboTerm="SBO:0000176" id="R_MAR06765" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -159277,7 +159317,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06765">
+            <rdf:Description rdf:about="#R_MAR06765">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR103579"/>
@@ -159288,15 +159328,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00821c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01249c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00821c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01249c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02603c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02603c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR06766" sboTerm="SBO:0000176" id="MAR06766" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06766" sboTerm="SBO:0000176" id="R_MAR06766" name="3-Methoxy-4-hydroxyphenylacetaldehyde:NAD+ oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -159305,7 +159345,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06766">
+            <rdf:Description rdf:about="#R_MAR06766">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.2.1.5"/>
@@ -159319,14 +159359,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00818c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00818c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02137c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02137c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -159334,7 +159374,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06767" sboTerm="SBO:0000176" id="MAR06767" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06767" sboTerm="SBO:0000176" id="R_MAR06767" name="3-Methoxy-4-hydroxyphenylacetaldehyde:NADP+ oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -159343,7 +159383,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06767">
+            <rdf:Description rdf:about="#R_MAR06767">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.2.1.5"/>
@@ -159356,14 +159396,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00818c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00818c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02137c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02137c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -159371,7 +159411,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06768" sboTerm="SBO:0000176" id="MAR06768" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06768" sboTerm="SBO:0000176" id="R_MAR06768" name="L-tyrosine:2-oxoglutarate aminotransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -159380,7 +159420,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06768">
+            <rdf:Description rdf:about="#R_MAR06768">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.6.1.1"/>
@@ -159396,12 +159436,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01306c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03101c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01306c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03101c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01005c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01974c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01005c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01974c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -159411,7 +159451,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06770" sboTerm="SBO:0000176" id="MAR06770" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06770" sboTerm="SBO:0000176" id="R_MAR06770" name="L-Tyrosine:oxygen oxidoreductase (deaminating)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -159420,7 +159460,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06770">
+            <rdf:Description rdf:about="#R_MAR06770">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.4.3.2"/>
@@ -159433,21 +159473,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03101c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03101c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01005c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02041c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02578c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01005c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02578c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="shps"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06772" sboTerm="SBO:0000176" id="MAR06772" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06772" sboTerm="SBO:0000176" id="R_MAR06772" name="4-Hydroxyphenylpyruvate:oxygen oxidoreductase (hydroxylating,decarboxylating)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -159456,7 +159496,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06772">
+            <rdf:Description rdf:about="#R_MAR06772">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.13.11.27"/>
@@ -159472,18 +159512,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01005c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01005c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01596c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02135c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01596c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02135c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Hpd"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06774" sboTerm="SBO:0000176" id="MAR06774" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06774" sboTerm="SBO:0000176" id="R_MAR06774" name="Homogentisate:oxygen 1,2-oxidoreductase (decyclizing)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -159492,7 +159532,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06774">
+            <rdf:Description rdf:about="#R_MAR06774">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.13.11.5"/>
@@ -159508,18 +159548,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02135c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02135c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01010c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01010c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="hgo"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06776" sboTerm="SBO:0000176" id="MAR06776" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06776" sboTerm="SBO:0000176" id="R_MAR06776" name="4-Maleylacetoacetate cis-trans-isomerase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -159527,7 +159567,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06776">
+            <rdf:Description rdf:about="#R_MAR06776">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/5.2.1.2"/>
@@ -159541,16 +159581,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01010c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01010c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01863c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01863c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="GstZ1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06778" sboTerm="SBO:0000176" id="MAR06778" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06778" sboTerm="SBO:0000176" id="R_MAR06778" name="4-fumarylacetoacetate fumarylhydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -159559,7 +159599,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06778">
+            <rdf:Description rdf:about="#R_MAR06778">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.7.1.2"/>
@@ -159575,19 +159615,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01863c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01863c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01253c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01862c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01253c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01862c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Faa"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06782" sboTerm="SBO:0000176" id="MAR06782" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06782" sboTerm="SBO:0000176" id="R_MAR06782" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -159595,7 +159635,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06782">
+            <rdf:Description rdf:about="#R_MAR06782">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.222"/>
@@ -159609,16 +159649,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01005c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01005c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01004c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01004c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR06783" sboTerm="SBO:0000176" id="MAR06783" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06783" sboTerm="SBO:0000176" id="R_MAR06783" name="3-(4-hydroxyphenyl)lactate hydro-lyase (4-coumarate-forming)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -159626,7 +159666,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06783">
+            <rdf:Description rdf:about="#R_MAR06783">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R08766"/>
@@ -159637,14 +159677,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01004c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01004c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00981c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00981c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR06784" sboTerm="SBO:0000176" id="MAR06784" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06784" sboTerm="SBO:0000176" id="R_MAR06784" name="4-Coumarate:CoA ligase (AMP-forming)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -159652,7 +159692,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06784">
+            <rdf:Description rdf:about="#R_MAR06784">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.12"/>
@@ -159665,17 +159705,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00981c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00981c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00982c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01334c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00982c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR06785" sboTerm="SBO:0000176" id="MAR06785" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06785" sboTerm="SBO:0000176" id="R_MAR06785" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -159683,7 +159723,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06785">
+            <rdf:Description rdf:about="#R_MAR06785">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R08767"/>
@@ -159695,19 +159735,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00982c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00982c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00996c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01261c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00996c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR06786" sboTerm="SBO:0000176" id="MAR06786" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06786" sboTerm="SBO:0000176" id="R_MAR06786" name="4-Hydroxybenzoyl-CoA hydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -159715,7 +159755,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06786">
+            <rdf:Description rdf:about="#R_MAR06786">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.2.23"/>
@@ -159730,16 +159770,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00996c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00996c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00995c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00995c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR06787" sboTerm="SBO:0000176" id="MAR06787" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06787" sboTerm="SBO:0000176" id="R_MAR06787" name="L-tyrosine carboxy-lyase (tyramine-forming)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -159747,7 +159787,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06787">
+            <rdf:Description rdf:about="#R_MAR06787">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.1.1.28"/>
@@ -159760,18 +159800,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03101c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03101c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01596c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03099c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01596c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03099c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Ddc"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06789" sboTerm="SBO:0000176" id="MAR06789" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06789" sboTerm="SBO:0000176" id="R_MAR06789" name="tyramine:oxygen oxidoreductase(deaminating)(flavin-containing)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -159779,7 +159819,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06789">
+            <rdf:Description rdf:about="#R_MAR06789">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.4.3.4"/>
@@ -159794,21 +159834,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03099c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03099c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01002c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02041c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02578c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01002c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02578c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="shps"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06790" sboTerm="SBO:0000176" id="MAR06790" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06790" sboTerm="SBO:0000176" id="R_MAR06790" name="4-hydroxyphenylacetaldehyde:NAD+ oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -159816,7 +159856,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06790">
+            <rdf:Description rdf:about="#R_MAR06790">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.2.1.5"/>
@@ -159829,14 +159869,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01002c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01002c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01003c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02553c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01003c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02553c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -159844,7 +159884,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06791" sboTerm="SBO:0000176" id="MAR06791" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06791" sboTerm="SBO:0000176" id="R_MAR06791" name="4-Hydroxyphenylacetaldehyde:NADP+ oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -159852,7 +159892,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06791">
+            <rdf:Description rdf:about="#R_MAR06791">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.2.1.5"/>
@@ -159865,14 +159905,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01002c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01002c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01003c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01003c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -159880,7 +159920,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06792" sboTerm="SBO:0000176" id="MAR06792" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06792" sboTerm="SBO:0000176" id="R_MAR06792" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -159889,7 +159929,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06792">
+            <rdf:Description rdf:about="#R_MAR06792">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR103598"/>
@@ -159900,15 +159940,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00991c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM00991c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="2" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01003c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02588c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01003c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02588c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR06798" sboTerm="SBO:0000176" id="MAR06798" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06798" sboTerm="SBO:0000176" id="R_MAR06798" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -159917,7 +159957,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06798">
+            <rdf:Description rdf:about="#R_MAR06798">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.17"/>
@@ -159928,13 +159968,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00733c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00733c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03052c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03109c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03052c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03109c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -159954,7 +159994,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06799" sboTerm="SBO:0000176" id="MAR06799" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06799" sboTerm="SBO:0000176" id="R_MAR06799" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -159963,7 +160003,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06799">
+            <rdf:Description rdf:about="#R_MAR06799">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.17"/>
@@ -159975,13 +160015,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03052r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03109r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03052r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03109r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00733r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00733r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -160001,7 +160041,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06800" sboTerm="SBO:0000176" id="MAR06800" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06800" sboTerm="SBO:0000176" id="R_MAR06800" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -160010,7 +160050,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06800">
+            <rdf:Description rdf:about="#R_MAR06800">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.17"/>
@@ -160021,13 +160061,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00732c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00732c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02998c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03109c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02998c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03109c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -160047,7 +160087,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06801" sboTerm="SBO:0000176" id="MAR06801" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06801" sboTerm="SBO:0000176" id="R_MAR06801" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -160056,7 +160096,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06801">
+            <rdf:Description rdf:about="#R_MAR06801">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.17"/>
@@ -160068,13 +160108,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02998r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03109r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02998r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03109r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00732r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00732r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -160094,7 +160134,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06802" sboTerm="SBO:0000176" id="MAR06802" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06802" sboTerm="SBO:0000176" id="R_MAR06802" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -160102,7 +160142,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06802">
+            <rdf:Description rdf:about="#R_MAR06802">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.1.1.-"/>
@@ -160115,16 +160155,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02606c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02877c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02606c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02877c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02138c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02871c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02138c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02871c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR06806" sboTerm="SBO:0000176" id="MAR06806" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06806" sboTerm="SBO:0000176" id="R_MAR06806" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -160133,7 +160173,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06806">
+            <rdf:Description rdf:about="#R_MAR06806">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR103857"/>
@@ -160144,14 +160184,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02500c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02500c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02499c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02499c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR06807" sboTerm="SBO:0000176" id="MAR06807" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06807" sboTerm="SBO:0000176" id="R_MAR06807" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -160160,7 +160200,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06807">
+            <rdf:Description rdf:about="#R_MAR06807">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR103617"/>
@@ -160171,15 +160211,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01154c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01154c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01736c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01831c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01736c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01831c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR06808" sboTerm="SBO:0000176" id="MAR06808" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06808" sboTerm="SBO:0000176" id="R_MAR06808" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -160188,7 +160228,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06808">
+            <rdf:Description rdf:about="#R_MAR06808">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.11.1.7"/>
@@ -160200,12 +160240,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01736c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02041c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01736c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01738c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01738c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -160214,7 +160254,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06811" sboTerm="SBO:0000176" id="MAR06811" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06811" sboTerm="SBO:0000176" id="R_MAR06811" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -160223,7 +160263,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06811">
+            <rdf:Description rdf:about="#R_MAR06811">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.5.1.18"/>
@@ -160235,11 +160275,11 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01138c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01138c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01738c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02026c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01738c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -160253,7 +160293,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06813" sboTerm="SBO:0000176" id="MAR06813" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06813" sboTerm="SBO:0000176" id="R_MAR06813" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -160261,7 +160301,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06813">
+            <rdf:Description rdf:about="#R_MAR06813">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.11.1.7"/>
@@ -160274,13 +160314,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01738c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02041c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01738c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01739c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01739c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -160290,7 +160330,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06815" sboTerm="SBO:0000176" id="MAR06815" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06815" sboTerm="SBO:0000176" id="R_MAR06815" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -160299,7 +160339,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06815">
+            <rdf:Description rdf:about="#R_MAR06815">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.5.1.18"/>
@@ -160311,11 +160351,11 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01136c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01136c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01739c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02026c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01739c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -160329,7 +160369,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06818" sboTerm="SBO:0000176" id="MAR06818" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06818" sboTerm="SBO:0000176" id="R_MAR06818" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -160337,7 +160377,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06818">
+            <rdf:Description rdf:about="#R_MAR06818">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR104046"/>
@@ -160348,16 +160388,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01290c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01290c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01292c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01292c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR06820" sboTerm="SBO:0000176" id="MAR06820" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06820" sboTerm="SBO:0000176" id="R_MAR06820" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -160366,7 +160406,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06820">
+            <rdf:Description rdf:about="#R_MAR06820">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.5.1.18"/>
@@ -160378,11 +160418,11 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01135c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01135c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01292c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02026c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01292c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -160396,7 +160436,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06822" sboTerm="SBO:0000176" id="MAR06822" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06822" sboTerm="SBO:0000176" id="R_MAR06822" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -160404,7 +160444,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06822">
+            <rdf:Description rdf:about="#R_MAR06822">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR104047"/>
@@ -160415,14 +160455,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02617c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02617c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="5" constant="true"/>
-          <speciesReference species="MAM02618c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="5" constant="true"/>
+          <speciesReference species="M_MAM02618c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR06824" sboTerm="SBO:0000176" id="MAR06824" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06824" sboTerm="SBO:0000176" id="R_MAR06824" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -160431,7 +160471,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06824">
+            <rdf:Description rdf:about="#R_MAR06824">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.5.1.18"/>
@@ -160443,11 +160483,11 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01140c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01140c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02026c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02618c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02618c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -160461,7 +160501,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06828" sboTerm="SBO:0000176" id="MAR06828" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06828" sboTerm="SBO:0000176" id="R_MAR06828" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -160470,7 +160510,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06828">
+            <rdf:Description rdf:about="#R_MAR06828">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.17"/>
@@ -160481,13 +160521,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00720c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03109c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00720c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03109c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00722c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00722c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -160507,7 +160547,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06829" sboTerm="SBO:0000176" id="MAR06829" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06829" sboTerm="SBO:0000176" id="R_MAR06829" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -160516,7 +160556,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06829">
+            <rdf:Description rdf:about="#R_MAR06829">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.8.2.-"/>
@@ -160528,13 +160568,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00720c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02682c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00720c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02682c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00721c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02681c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00721c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02681c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -160550,7 +160590,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06830" sboTerm="SBO:0000176" id="MAR06830" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06830" sboTerm="SBO:0000176" id="R_MAR06830" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -160559,7 +160599,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06830">
+            <rdf:Description rdf:about="#R_MAR06830">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.17"/>
@@ -160571,13 +160611,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00720r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03109r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00720r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03109r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00722r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00722r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -160597,7 +160637,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06836" sboTerm="SBO:0000176" id="MAR06836" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06836" sboTerm="SBO:0000176" id="R_MAR06836" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -160606,7 +160646,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06836">
+            <rdf:Description rdf:about="#R_MAR06836">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.17"/>
@@ -160617,13 +160657,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00719c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00719c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02839c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03109c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02839c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03109c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -160643,7 +160683,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06837" sboTerm="SBO:0000176" id="MAR06837" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06837" sboTerm="SBO:0000176" id="R_MAR06837" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -160652,7 +160692,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06837">
+            <rdf:Description rdf:about="#R_MAR06837">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.17"/>
@@ -160664,13 +160704,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02839r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03109r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02839r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03109r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00719r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00719r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -160690,7 +160730,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06838" sboTerm="SBO:0000176" id="MAR06838" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06838" sboTerm="SBO:0000176" id="R_MAR06838" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -160699,7 +160739,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06838">
+            <rdf:Description rdf:about="#R_MAR06838">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.8.2.-"/>
@@ -160711,19 +160751,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02682c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02839c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02682c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02839c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00734c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02681c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00734c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02681c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="St2"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06842" sboTerm="SBO:0000176" id="MAR06842" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06842" sboTerm="SBO:0000176" id="R_MAR06842" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -160732,7 +160772,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06842">
+            <rdf:Description rdf:about="#R_MAR06842">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.17"/>
@@ -160743,13 +160783,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00738c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00738c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00736c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03109c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00736c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03109c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -160769,7 +160809,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06843" sboTerm="SBO:0000176" id="MAR06843" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06843" sboTerm="SBO:0000176" id="R_MAR06843" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -160778,7 +160818,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06843">
+            <rdf:Description rdf:about="#R_MAR06843">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.17"/>
@@ -160790,13 +160830,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00736r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03109r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00736r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03109r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00738r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00738r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -160816,7 +160856,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06844" sboTerm="SBO:0000176" id="MAR06844" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06844" sboTerm="SBO:0000176" id="R_MAR06844" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -160825,7 +160865,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06844">
+            <rdf:Description rdf:about="#R_MAR06844">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.8.2.-"/>
@@ -160837,19 +160877,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00736c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02682c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00736c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02682c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00737c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02681c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00737c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02681c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="St2"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06850" sboTerm="SBO:0000176" id="MAR06850" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06850" sboTerm="SBO:0000176" id="R_MAR06850" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -160858,7 +160898,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06850">
+            <rdf:Description rdf:about="#R_MAR06850">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.8.2.-"/>
@@ -160870,19 +160910,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00828c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02682c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00828c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02682c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00829c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02681c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00829c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02681c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="St2"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06875" sboTerm="SBO:0000176" id="MAR06875" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06875" sboTerm="SBO:0000176" id="R_MAR06875" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -160891,7 +160931,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06875">
+            <rdf:Description rdf:about="#R_MAR06875">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R02962"/>
@@ -160903,14 +160943,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00638c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00638c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02356c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02356c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR06876" sboTerm="SBO:0000176" id="MAR06876" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06876" sboTerm="SBO:0000176" id="R_MAR06876" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -160919,7 +160959,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06876">
+            <rdf:Description rdf:about="#R_MAR06876">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R03672"/>
@@ -160931,15 +160971,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00638c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02356c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00638c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02356c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02354c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02355c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02354c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02355c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR06877" sboTerm="SBO:0000176" id="MAR06877" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06877" sboTerm="SBO:0000176" id="R_MAR06877" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -160948,7 +160988,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06877">
+            <rdf:Description rdf:about="#R_MAR06877">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R08848"/>
@@ -160960,14 +161000,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01134c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01134c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01628c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02356c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01628c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02356c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR06878" sboTerm="SBO:0000176" id="MAR06878" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06878" sboTerm="SBO:0000176" id="R_MAR06878" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -160976,7 +161016,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06878">
+            <rdf:Description rdf:about="#R_MAR06878">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/RE1917C"/>
@@ -160986,15 +161026,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01043c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02354c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01043c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02354c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01134c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02356c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01134c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02356c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR06879" sboTerm="SBO:0000176" id="MAR06879" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06879" sboTerm="SBO:0000176" id="R_MAR06879" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -161003,7 +161043,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06879">
+            <rdf:Description rdf:about="#R_MAR06879">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/RE2026C"/>
@@ -161013,15 +161053,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00249c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00249c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01043c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01043c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR06880" sboTerm="SBO:0000176" id="MAR06880" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06880" sboTerm="SBO:0000176" id="R_MAR06880" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -161030,7 +161070,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06880">
+            <rdf:Description rdf:about="#R_MAR06880">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/RE2027C"/>
@@ -161040,15 +161080,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00249c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01134c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00249c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01134c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00723c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01043c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00723c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01043c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR06881" sboTerm="SBO:0000176" id="MAR06881" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06881" sboTerm="SBO:0000176" id="R_MAR06881" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -161057,7 +161097,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06881">
+            <rdf:Description rdf:about="#R_MAR06881">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/RE2028C"/>
@@ -161067,15 +161107,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00723c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00723c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01381c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01596c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01381c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01596c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR06882" sboTerm="SBO:0000176" id="MAR06882" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06882" sboTerm="SBO:0000176" id="R_MAR06882" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -161084,7 +161124,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06882">
+            <rdf:Description rdf:about="#R_MAR06882">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/RE2029C"/>
@@ -161094,14 +161134,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00735c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00735c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01381c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01381c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR06883" sboTerm="SBO:0000176" id="MAR06883" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06883" sboTerm="SBO:0000176" id="R_MAR06883" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -161110,7 +161150,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06883">
+            <rdf:Description rdf:about="#R_MAR06883">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.5.1.18"/>
@@ -161122,11 +161162,11 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01139c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01139c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02026c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02356c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02356c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -161140,7 +161180,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06886" sboTerm="SBO:0000176" id="MAR06886" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06886" sboTerm="SBO:0000176" id="R_MAR06886" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -161149,7 +161189,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06886">
+            <rdf:Description rdf:about="#R_MAR06886">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.5.1.18"/>
@@ -161161,11 +161201,11 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01137c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01137c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02026c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02355c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02355c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -161179,7 +161219,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07628" sboTerm="SBO:0000176" id="MAR07628" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07628" sboTerm="SBO:0000176" id="R_MAR07628" name="L-phenylalanine:oxygen 2-oxidoreductase (decarboxylating)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -161187,7 +161227,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07628">
+            <rdf:Description rdf:about="#R_MAR07628">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.11.1.7"/>
@@ -161200,13 +161240,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02724c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02724c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00673c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01596c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00673c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01596c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -161215,7 +161255,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07756" sboTerm="SBO:0000176" id="MAR07756" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07756" sboTerm="SBO:0000176" id="R_MAR07756" name="2-phenylacetamide amidohydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -161223,7 +161263,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07756">
+            <rdf:Description rdf:about="#R_MAR07756">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.5.1.4"/>
@@ -161236,19 +161276,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00673c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00673c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02578c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02720c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02578c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02720c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG8839"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08539" sboTerm="SBO:0000176" id="MAR08539" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08539" sboTerm="SBO:0000176" id="R_MAR08539" name="L-phenylalanine,tetrahydrobiopterin:oxygen oxidoreductase(4-hydroxylating)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -161256,7 +161296,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08539">
+            <rdf:Description rdf:about="#R_MAR08539">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.16.1"/>
@@ -161270,19 +161310,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02724c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02978c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02724c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02978c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00965c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03101c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00965c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03101c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Hn"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08794" sboTerm="SBO:0000176" id="MAR08794" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08794" sboTerm="SBO:0000176" id="R_MAR08794" name="Phenylacetate:CoA ligase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -161290,7 +161330,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08794">
+            <rdf:Description rdf:about="#R_MAR08794">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PACCOAL"/>
@@ -161303,17 +161343,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02720c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02720c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01334c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02721c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02721c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08795" sboTerm="SBO:0000176" id="MAR08795" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08795" sboTerm="SBO:0000176" id="R_MAR08795" name="Phenylacetyl-CoA:L-glutamine alpha-N-phenylacetyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -161321,7 +161361,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08795">
+            <rdf:Description rdf:about="#R_MAR08795">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PHACCOAGLNAC"/>
@@ -161334,15 +161374,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01975c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02721c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01975c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02721c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02722c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02722c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08796" sboTerm="SBO:0000176" id="MAR08796" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08796" sboTerm="SBO:0000176" id="R_MAR08796" name="phenylacetyl-CoA:glycine N-phenylacetyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -161350,7 +161390,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08796">
+            <rdf:Description rdf:about="#R_MAR08796">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.13"/>
@@ -161365,19 +161405,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01986c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02721c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02721c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02723c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02723c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG5783"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03875" sboTerm="SBO:0000176" id="MAR03875" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03875" sboTerm="SBO:0000176" id="R_MAR03875" name="ATP:L-methionine S-adenosyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -161386,7 +161426,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03875">
+            <rdf:Description rdf:about="#R_MAR03875">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.5.1.6"/>
@@ -161400,17 +161440,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02471c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02471c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02877c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02877c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03877" sboTerm="SBO:0000176" id="MAR03877" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03877" sboTerm="SBO:0000176" id="R_MAR03877" name="S-Adenosyl-L-homocysteine hydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -161419,7 +161459,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03877">
+            <rdf:Description rdf:about="#R_MAR03877">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.3.1.1"/>
@@ -161433,12 +161473,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02871c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02871c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01280c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02133c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01280c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02133c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -161447,7 +161487,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03879" sboTerm="SBO:0000176" id="MAR03879" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03879" sboTerm="SBO:0000176" id="R_MAR03879" name="L-serine hydro-lyase (adding homocysteine" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -161456,7 +161496,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03879">
+            <rdf:Description rdf:about="#R_MAR03879">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.22"/>
@@ -161472,18 +161512,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02133c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02896c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02133c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02896c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02349c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02349c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Cbs"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03881" sboTerm="SBO:0000176" id="MAR03881" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03881" sboTerm="SBO:0000176" id="R_MAR03881" name="L-cystathionine cysteine-lyase (deaminating" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -161492,7 +161532,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03881">
+            <rdf:Description rdf:about="#R_MAR03881">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.4.1.1"/>
@@ -161508,20 +161548,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02349c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02349c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00671c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01628c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02578c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00671c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01628c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02578c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Eip55E"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03912" sboTerm="SBO:0000176" id="MAR03912" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03912" sboTerm="SBO:0000176" id="R_MAR03912" name="L-Cysteine:2-oxoglutarate aminotransferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -161530,7 +161570,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03912">
+            <rdf:Description rdf:about="#R_MAR03912">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.6.1.1"/>
@@ -161545,12 +161585,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01306c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01628c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01306c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01628c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01974c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02464c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01974c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02464c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -161559,7 +161599,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03917" sboTerm="SBO:0000176" id="MAR03917" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03917" sboTerm="SBO:0000176" id="R_MAR03917" name="5-methyltetrahydrofolate:L-homocysteine S-methyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -161568,7 +161608,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03917">
+            <rdf:Description rdf:about="#R_MAR03917">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.1.1.13"/>
@@ -161582,13 +161622,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01115c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02133c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01115c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02133c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02471c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02980c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02471c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02980c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -161597,7 +161637,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03919" sboTerm="SBO:0000176" id="MAR03919" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03919" sboTerm="SBO:0000176" id="R_MAR03919" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -161606,7 +161646,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03919">
+            <rdf:Description rdf:about="#R_MAR03919">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.5.1.14"/>
@@ -161618,12 +161658,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02540c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02540c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01252c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02471c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01252c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02471c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -161633,7 +161673,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03995" sboTerm="SBO:0000176" id="MAR03995" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03995" sboTerm="SBO:0000176" id="R_MAR03995" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -161642,7 +161682,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03995">
+            <rdf:Description rdf:about="#R_MAR03995">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.8.1.9"/>
@@ -161655,16 +161695,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01629c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01629c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01628c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01628c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03996" sboTerm="SBO:0000176" id="MAR03996" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03996" sboTerm="SBO:0000176" id="R_MAR03996" name="L-cysteine:NAD+ oxidoreductase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -161672,7 +161712,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03996">
+            <rdf:Description rdf:about="#R_MAR03996">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.8.1.6"/>
@@ -161686,16 +161726,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01629c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01629c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01628c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02552c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01628c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02552c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR04072" sboTerm="SBO:0000176" id="MAR04072" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04072" sboTerm="SBO:0000176" id="R_MAR04072" name="S-Adenosyl-L-methionine:DNA (cytosine-5-)-methyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -161703,7 +161743,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04072">
+            <rdf:Description rdf:about="#R_MAR04072">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.1.1.37"/>
@@ -161716,13 +161756,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01721c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02877c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01721c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02877c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01722c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02871c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01722c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02871c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -161731,7 +161771,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04189" sboTerm="SBO:0000176" id="MAR04189" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04189" sboTerm="SBO:0000176" id="R_MAR04189" name="Sulfite:oxygen oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -161740,7 +161780,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04189">
+            <rdf:Description rdf:about="#R_MAR04189">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.8.3.1"/>
@@ -161755,19 +161795,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02949m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02949m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02041m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02946m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02946m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="shop"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04302" sboTerm="SBO:0000176" id="MAR04302" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04302" sboTerm="SBO:0000176" id="R_MAR04302" name="L-cysteine hydrogen-sulfide-lyase (deaminating" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -161776,7 +161816,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04302">
+            <rdf:Description rdf:about="#R_MAR04302">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.4.1.1"/>
@@ -161790,20 +161830,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01628c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01628c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02042c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02578c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02819c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02042c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02578c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02819c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Eip55E"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04323" sboTerm="SBO:0000176" id="MAR04323" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04323" sboTerm="SBO:0000176" id="R_MAR04323" name="L-serine hydro-lyase (adding hydrogen sulfide, L-cysteine-forming)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -161812,7 +161852,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04323">
+            <rdf:Description rdf:about="#R_MAR04323">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.22"/>
@@ -161826,19 +161866,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02042c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02896c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02042c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02896c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01628c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01628c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Cbs"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05385" sboTerm="SBO:0000176" id="MAR05385" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05385" sboTerm="SBO:0000176" id="R_MAR05385" name="5-methylthio-5-deoxy-D-ribose-1-phosphate ketol-isomerase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -161846,7 +161886,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05385">
+            <rdf:Description rdf:about="#R_MAR05385">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/5.3.1.23"/>
@@ -161861,16 +161901,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02481c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02481c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02910c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02910c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG11334"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05386" sboTerm="SBO:0000176" id="MAR05386" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05386" sboTerm="SBO:0000176" id="R_MAR05386" name="S-methyl-5-thio-D-ribulose-1-phosphate hydro-lyase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -161878,7 +161918,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05386">
+            <rdf:Description rdf:about="#R_MAR05386">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.109"/>
@@ -161891,17 +161931,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02910c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02910c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00572c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00572c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG11134"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05387" sboTerm="SBO:0000176" id="MAR05387" name="Acireductone Synthase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05387" sboTerm="SBO:0000176" id="R_MAR05387" name="Acireductone Synthase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 4</p>
@@ -161910,7 +161950,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05387">
+            <rdf:Description rdf:about="#R_MAR05387">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.3.77"/>
@@ -161925,18 +161965,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00572c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00572c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00245c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00245c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG12173"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05388" sboTerm="SBO:0000176" id="MAR05388" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05388" sboTerm="SBO:0000176" id="R_MAR05388" name="1,2-dihydroxy-5-(methylthio)pent-1-en-3-one:oxygen oxidoreductase (formate- and CO-forming)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -161944,7 +161984,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05388">
+            <rdf:Description rdf:about="#R_MAR05388">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.13.11.53"/>
@@ -161957,20 +161997,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00245c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00245c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00684c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01595c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01833c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM00684c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01595c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01833c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="2" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Adi1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05389" sboTerm="SBO:0000176" id="MAR05389" name="Acireductone Dixoygenase 1" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05389" sboTerm="SBO:0000176" id="R_MAR05389" name="Acireductone Dixoygenase 1" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 4</p>
@@ -161979,7 +162019,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05389">
+            <rdf:Description rdf:about="#R_MAR05389">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.13.11.54"/>
@@ -161996,19 +162036,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00245c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00245c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01016c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01833c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01016c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01833c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="2" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Adi1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05390" sboTerm="SBO:0000176" id="MAR05390" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05390" sboTerm="SBO:0000176" id="R_MAR05390" name="L-Methionine:oxygen oxidoreductase (deaminating)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -162016,7 +162056,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05390">
+            <rdf:Description rdf:about="#R_MAR05390">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.4.3.2"/>
@@ -162029,21 +162069,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02471c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02471c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01016c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02041c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02578c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01016c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02578c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="shps"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05391" sboTerm="SBO:0000176" id="MAR05391" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05391" sboTerm="SBO:0000176" id="R_MAR05391" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -162051,7 +162091,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05391">
+            <rdf:Description rdf:about="#R_MAR05391">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.6.1.5"/>
@@ -162064,18 +162104,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01016c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01974c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01016c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01974c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01306c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02471c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01306c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02471c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Tat"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06519" sboTerm="SBO:0000176" id="MAR06519" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06519" sboTerm="SBO:0000176" id="R_MAR06519" name="3-Mercaptolactate:NAD+ oxidoreductase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -162083,7 +162123,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06519">
+            <rdf:Description rdf:about="#R_MAR06519">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.27"/>
@@ -162096,13 +162136,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00815c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00815c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02464c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02464c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -162111,7 +162151,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06523" sboTerm="SBO:0000176" id="MAR06523" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06523" sboTerm="SBO:0000176" id="R_MAR06523" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -162119,7 +162159,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06523">
+            <rdf:Description rdf:about="#R_MAR06523">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.11.1.7"/>
@@ -162133,13 +162173,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02041c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02986c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02986c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02158c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02158c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -162151,7 +162191,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08066" sboTerm="SBO:0000176" id="MAR08066" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08066" sboTerm="SBO:0000176" id="R_MAR08066" name="L-cysteate:2-oxoglutarate aminotransferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -162159,7 +162199,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08066">
+            <rdf:Description rdf:about="#R_MAR08066">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.6.1.1"/>
@@ -162174,12 +162214,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00920c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01974c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00920c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01974c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01306c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02350c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01306c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02350c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -162188,7 +162228,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08067" sboTerm="SBO:0000176" id="MAR08067" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08067" sboTerm="SBO:0000176" id="R_MAR08067" name="L-cysteate:2-oxoglutarate aminotransferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -162196,7 +162236,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08067">
+            <rdf:Description rdf:about="#R_MAR08067">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.6.1.1"/>
@@ -162211,18 +162251,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00920m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01974m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00920m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01974m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01306m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02350m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01306m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02350m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Got2"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08068" sboTerm="SBO:0000176" id="MAR08068" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08068" sboTerm="SBO:0000176" id="R_MAR08068" name="(R)-2-hydroxyacid:NAD+ oxidoreductase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -162230,7 +162270,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08068">
+            <rdf:Description rdf:about="#R_MAR08068">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.37"/>
@@ -162246,19 +162286,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00179c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00179c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00920c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00920c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Mdh1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08069" sboTerm="SBO:0000176" id="MAR08069" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08069" sboTerm="SBO:0000176" id="R_MAR08069" name="(R)-2-hydroxyacid:NAD+ oxidoreductase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -162266,7 +162306,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08069">
+            <rdf:Description rdf:about="#R_MAR08069">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.37"/>
@@ -162282,19 +162322,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00179m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00179m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00920m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00920m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Mdh2"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08641" sboTerm="SBO:0000176" id="MAR08641" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08641" sboTerm="SBO:0000176" id="R_MAR08641" name="S-adenosyl-L-methionine:DNA (cytosine-5-)-methyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -162302,7 +162342,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08641">
+            <rdf:Description rdf:about="#R_MAR08641">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.1.1.37"/>
@@ -162316,13 +162356,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01721n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02877n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01721n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02877n" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01722n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02871n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01722n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02871n" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -162331,7 +162371,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08682" sboTerm="SBO:0000176" id="MAR08682" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08682" sboTerm="SBO:0000176" id="R_MAR08682" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -162339,7 +162379,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08682">
+            <rdf:Description rdf:about="#R_MAR08682">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CYSGLUexR"/>
@@ -162351,15 +162391,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01629c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02026c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01629c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026c" stoichiometry="2" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01628c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02027c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01628c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02027c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08683" sboTerm="SBO:0000176" id="MAR08683" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08683" sboTerm="SBO:0000176" id="R_MAR08683" name="L-cystine thiocysteine-lyase (deaminating" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -162367,7 +162407,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08683">
+            <rdf:Description rdf:about="#R_MAR08683">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CYSO"/>
@@ -162380,20 +162420,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01629c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01629c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02578c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02819c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02987c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02578c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02819c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02987c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Eip55E"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08684" sboTerm="SBO:0000176" id="MAR08684" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08684" sboTerm="SBO:0000176" id="R_MAR08684" name="L-Cysteine:2-oxoglutarate aminotransferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -162401,7 +162441,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08684">
+            <rdf:Description rdf:about="#R_MAR08684">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.6.1.1"/>
@@ -162415,18 +162455,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01306m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01628m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01306m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01628m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01974m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02464m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01974m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02464m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Got2"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08685" sboTerm="SBO:0000176" id="MAR08685" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08685" sboTerm="SBO:0000176" id="R_MAR08685" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -162434,7 +162474,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08685">
+            <rdf:Description rdf:about="#R_MAR08685">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/MCLACCYSR"/>
@@ -162446,17 +162486,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00815c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01628c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00815c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01628c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00816c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00816c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03889" sboTerm="SBO:0000176" id="MAR03889" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03889" sboTerm="SBO:0000176" id="R_MAR03889" name="5-oxo-L-proline amidohydrolase (ATP-hydrolysing)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -162465,7 +162505,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03889">
+            <rdf:Description rdf:about="#R_MAR03889">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.5.2.9"/>
@@ -162479,21 +162519,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01127c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01127c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01974c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01974c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG4752"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03933" sboTerm="SBO:0000176" id="MAR03933" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03933" sboTerm="SBO:0000176" id="R_MAR03933" name="S-(hydroxymethyl)glutathione dehydrogenase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -162502,7 +162542,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03933">
+            <rdf:Description rdf:about="#R_MAR03933">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.284"/>
@@ -162517,19 +162557,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01837c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01837c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02152c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02152c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Fdh"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03937" sboTerm="SBO:0000176" id="MAR03937" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03937" sboTerm="SBO:0000176" id="R_MAR03937" name="S-Formylglutathione hydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -162538,7 +162578,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03937">
+            <rdf:Description rdf:about="#R_MAR03937">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.2.12"/>
@@ -162552,19 +162592,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01837c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01837c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01833c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02026c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01833c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG4390"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04116" sboTerm="SBO:0000176" id="MAR04116" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04116" sboTerm="SBO:0000176" id="R_MAR04116" name="glutathione:hydrogen-peroxide oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -162573,7 +162613,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04116">
+            <rdf:Description rdf:about="#R_MAR04116">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.11.1.9"/>
@@ -162590,12 +162630,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02026c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02041c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02041c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02027c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02027c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -162607,7 +162647,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04120" sboTerm="SBO:0000176" id="MAR04120" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04120" sboTerm="SBO:0000176" id="R_MAR04120" name="glutathione:hydrogen-peroxide oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -162616,7 +162656,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04120">
+            <rdf:Description rdf:about="#R_MAR04120">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.11.1.9"/>
@@ -162633,12 +162673,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02026e" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02041e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026e" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02041e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02027e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040e" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02027e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040e" stoichiometry="2" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -162650,7 +162690,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04121" sboTerm="SBO:0000176" id="MAR04121" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04121" sboTerm="SBO:0000176" id="R_MAR04121" name="glutathione:hydrogen-peroxide oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -162659,7 +162699,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04121">
+            <rdf:Description rdf:about="#R_MAR04121">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.11.1.9"/>
@@ -162676,12 +162716,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02026m" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02041m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026m" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02041m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02027m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02027m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="2" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -162693,7 +162733,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04175" sboTerm="SBO:0000176" id="MAR04175" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04175" sboTerm="SBO:0000176" id="R_MAR04175" name="glutathione gamma-glutamylaminopeptidase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -162702,7 +162742,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04175">
+            <rdf:Description rdf:about="#R_MAR04175">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.2.2"/>
@@ -162716,15 +162756,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02026c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01626c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01974c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01626c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01974c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR04176" sboTerm="SBO:0000176" id="MAR04176" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04176" sboTerm="SBO:0000176" id="R_MAR04176" name="glutathione gamma-glutamylaminopeptidase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -162733,7 +162773,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04176">
+            <rdf:Description rdf:about="#R_MAR04176">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.2.2"/>
@@ -162747,15 +162787,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02026e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01626e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01974e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01626e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01974e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR04324" sboTerm="SBO:0000176" id="MAR04324" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04324" sboTerm="SBO:0000176" id="R_MAR04324" name="L-glutamate:L-cysteine gamma-ligase (ADP-forming)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -162764,7 +162804,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04324">
+            <rdf:Description rdf:about="#R_MAR04324">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.3.2.2"/>
@@ -162778,15 +162818,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01628c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01974c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01628c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01974c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01927c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01927c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:and>
@@ -162795,7 +162835,7 @@
           </fbc:and>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04326" sboTerm="SBO:0000176" id="MAR04326" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04326" sboTerm="SBO:0000176" id="R_MAR04326" name="gamma-L-glutamyl-L-cysteine:glycine ligase (ADP-forming)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -162804,7 +162844,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04326">
+            <rdf:Description rdf:about="#R_MAR04326">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.3.2.3"/>
@@ -162820,21 +162860,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01927c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01986c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01927c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02026c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Gss1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04328" sboTerm="SBO:0000176" id="MAR04328" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04328" sboTerm="SBO:0000176" id="R_MAR04328" name="L-cysteinylglycine dipeptidase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -162843,7 +162883,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04328">
+            <rdf:Description rdf:about="#R_MAR04328">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.4.11.1"/>
@@ -162858,12 +162898,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01626c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01626c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01628c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01986c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01628c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -162871,7 +162911,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04329" sboTerm="SBO:0000176" id="MAR04329" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04329" sboTerm="SBO:0000176" id="R_MAR04329" name="L-cysteinylglycine dipeptidase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -162880,7 +162920,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04329">
+            <rdf:Description rdf:about="#R_MAR04329">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.4.11.1"/>
@@ -162895,12 +162935,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01626e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01626e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01628e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01986e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01628e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -162908,7 +162948,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04708" sboTerm="SBO:0000176" id="MAR04708" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04708" sboTerm="SBO:0000176" id="R_MAR04708" name="gamma-L-glutamyl-L-cysteine gamma-glutamyl cyclotransferase (5-oxoproline-forming)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -162917,7 +162957,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04708">
+            <rdf:Description rdf:about="#R_MAR04708">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.2.4"/>
@@ -162930,14 +162970,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01927c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01927c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01127c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01628c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01127c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01628c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08769" sboTerm="SBO:0000176" id="MAR08769" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08769" sboTerm="SBO:0000176" id="R_MAR08769" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -162945,7 +162985,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08769">
+            <rdf:Description rdf:about="#R_MAR08769">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.2.2"/>
@@ -162958,15 +162998,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01307c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02026c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01307c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00097e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01626e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00097e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01626e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08770" sboTerm="SBO:0000176" id="MAR08770" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08770" sboTerm="SBO:0000176" id="R_MAR08770" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -162974,7 +163014,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08770">
+            <rdf:Description rdf:about="#R_MAR08770">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.2.4"/>
@@ -162987,14 +163027,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00097e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00097e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01127c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01307c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01127c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01307c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08771" sboTerm="SBO:0000185" id="MAR08771" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08771" sboTerm="SBO:0000185" id="R_MAR08771" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -163002,7 +163042,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08771">
+            <rdf:Description rdf:about="#R_MAR08771">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GTHRDt"/>
@@ -163016,18 +163056,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02026c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02026m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR04078" sboTerm="SBO:0000176" id="MAR04078" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04078" sboTerm="SBO:0000176" id="R_MAR04078" name="spermidine:oxygen oxidoreductase (spermidine-forming)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -163035,7 +163075,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04078">
+            <rdf:Description rdf:about="#R_MAR04078">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.5.3.17"/>
@@ -163047,20 +163087,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02926c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02926c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00760c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02041c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02923c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00760c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02923c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG6034"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04079" sboTerm="SBO:0000176" id="MAR04079" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04079" sboTerm="SBO:0000176" id="R_MAR04079" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -163068,7 +163108,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04079">
+            <rdf:Description rdf:about="#R_MAR04079">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.2.1.3"/>
@@ -163079,14 +163119,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00760c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00760c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01383c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01383c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -163094,7 +163134,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04174" sboTerm="SBO:0000176" id="MAR04174" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04174" sboTerm="SBO:0000176" id="R_MAR04174" name="L-aspartate 1-carboxy-lyase (beta-alanine-forming)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -163103,7 +163143,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04174">
+            <rdf:Description rdf:about="#R_MAR04174">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.1.1.11"/>
@@ -163118,18 +163158,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01370c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01370c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01383c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01596c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01383c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01596c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Gad1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04330" sboTerm="SBO:0000176" id="MAR04330" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04330" sboTerm="SBO:0000176" id="R_MAR04330" name="beta-alanine:2-oxoglutarate aminotransferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -163138,7 +163178,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04330">
+            <rdf:Description rdf:about="#R_MAR04330">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.6.1.55"/>
@@ -163153,18 +163193,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00900m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01974m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00900m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01974m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01306m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01383m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01306m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01383m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Gabat"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04347" sboTerm="SBO:0000176" id="MAR04347" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04347" sboTerm="SBO:0000176" id="R_MAR04347" name="3-ureidopropanoate amidohydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -163173,7 +163213,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04347">
+            <rdf:Description rdf:about="#R_MAR04347">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.5.1.6"/>
@@ -163186,20 +163226,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00923c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00923c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01383c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01596c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02578c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01383c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01596c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02578c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="pyd3"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04688" sboTerm="SBO:0000176" id="MAR04688" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04688" sboTerm="SBO:0000176" id="R_MAR04688" name="4-aminobutanal:NAD+ 1-oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -163208,7 +163248,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04688">
+            <rdf:Description rdf:about="#R_MAR04688">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.2.1.3"/>
@@ -163222,14 +163262,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00969m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00969m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00970m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00970m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -163237,7 +163277,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04735" sboTerm="SBO:0000176" id="MAR04735" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04735" sboTerm="SBO:0000176" id="R_MAR04735" name="3-Hydroxypropionyl-CoA hydro-lyase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -163246,7 +163286,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04735">
+            <rdf:Description rdf:about="#R_MAR04735">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.17"/>
@@ -163260,14 +163300,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01265m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01265m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00799m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00799m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07991" sboTerm="SBO:0000176" id="MAR07991" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07991" sboTerm="SBO:0000176" id="R_MAR07991" name="spermidine:(acceptor) oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -163275,7 +163315,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07991">
+            <rdf:Description rdf:about="#R_MAR07991">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/SPMDOX"/>
@@ -163288,17 +163328,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02923c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02923c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00248c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00969c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02041c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00248c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00969c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07993" sboTerm="SBO:0000176" id="MAR07993" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07993" sboTerm="SBO:0000176" id="R_MAR07993" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -163306,7 +163346,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07993">
+            <rdf:Description rdf:about="#R_MAR07993">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.2.1.3"/>
@@ -163319,14 +163359,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00760c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00760c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01383c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02553c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01383c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02553c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -163334,7 +163374,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07128" sboTerm="SBO:0000176" id="MAR07128" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07128" sboTerm="SBO:0000176" id="R_MAR07128" name="ATP:selenate adenylyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -163342,7 +163382,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07128">
+            <rdf:Description rdf:about="#R_MAR07128">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.7.4"/>
@@ -163357,19 +163397,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02885c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02885c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01284c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01284c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Papss"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07129" sboTerm="SBO:0000176" id="MAR07129" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07129" sboTerm="SBO:0000176" id="R_MAR07129" name="ATP:adenylylsulfate 3&apos;-phosphotransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -163377,7 +163417,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07129">
+            <rdf:Description rdf:about="#R_MAR07129">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.1.25"/>
@@ -163392,19 +163432,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01284c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01284c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00912c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00912c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Papss"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07130" sboTerm="SBO:0000176" id="MAR07130" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07130" sboTerm="SBO:0000176" id="R_MAR07130" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -163412,7 +163452,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07130">
+            <rdf:Description rdf:about="#R_MAR07130">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R04940"/>
@@ -163424,17 +163464,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00912c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00912c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02681c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02887c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02681c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02887c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07131" sboTerm="SBO:0000176" id="MAR07131" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07131" sboTerm="SBO:0000176" id="R_MAR07131" name="hydrogen selenide:NADP+ oxidoreductase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -163442,7 +163482,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07131">
+            <rdf:Description rdf:about="#R_MAR07131">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.8.1.9"/>
@@ -163455,17 +163495,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="4" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM02887c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM02887c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040c" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM02886c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM02886c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07132" sboTerm="SBO:0000176" id="MAR07132" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07132" sboTerm="SBO:0000176" id="R_MAR07132" name="ATP:selenide, water phosphotransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -163473,7 +163513,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07132">
+            <rdf:Description rdf:about="#R_MAR07132">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.9.3"/>
@@ -163487,20 +163527,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02886c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02886c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01334c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02894c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02894c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Sps1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07134" sboTerm="SBO:0000176" id="MAR07134" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07134" sboTerm="SBO:0000176" id="R_MAR07134" name="Selenocystathionine Lysteine-lyase (deaminating)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -163508,7 +163548,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07134">
+            <rdf:Description rdf:about="#R_MAR07134">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.4.1.1"/>
@@ -163522,20 +163562,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02888c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02888c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00671c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02578c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02889c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00671c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02578c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02889c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Eip55E"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07135" sboTerm="SBO:0000176" id="MAR07135" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07135" sboTerm="SBO:0000176" id="R_MAR07135" name="L-Serine hydro-lyase (adding homocysteine)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -163543,7 +163583,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07135">
+            <rdf:Description rdf:about="#R_MAR07135">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.22"/>
@@ -163557,18 +163597,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02888c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02888c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02890c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02896c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02890c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02896c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Cbs"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07136" sboTerm="SBO:0000176" id="MAR07136" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07136" sboTerm="SBO:0000176" id="R_MAR07136" name="Se-Adenosylselenohomocysteine hydrolase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -163576,7 +163616,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07136">
+            <rdf:Description rdf:about="#R_MAR07136">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.3.1.1"/>
@@ -163591,12 +163631,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02881c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02881c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01280c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02890c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01280c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02890c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -163605,7 +163645,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07137" sboTerm="SBO:0000176" id="MAR07137" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07137" sboTerm="SBO:0000176" id="R_MAR07137" name="Selenomethionine methanethiol-lyase (deaminating)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -163613,7 +163653,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07137">
+            <rdf:Description rdf:about="#R_MAR07137">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.4.1.1"/>
@@ -163626,20 +163666,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02891c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02891c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00671c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02469c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02578c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00671c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02469c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02578c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Eip55E"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07138" sboTerm="SBO:0000176" id="MAR07138" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07138" sboTerm="SBO:0000176" id="R_MAR07138" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -163648,7 +163688,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07138">
+            <rdf:Description rdf:about="#R_MAR07138">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.13.8"/>
@@ -163660,18 +163700,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02891c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02891c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02892c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02892c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07139" sboTerm="SBO:0000176" id="MAR07139" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07139" sboTerm="SBO:0000176" id="R_MAR07139" name="ATP:L-selenomethione S-adenosyltransferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -163679,7 +163719,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07139">
+            <rdf:Description rdf:about="#R_MAR07139">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.5.1.6"/>
@@ -163693,17 +163733,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02891c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02891c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02882c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02882c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07140" sboTerm="SBO:0000176" id="MAR07140" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07140" sboTerm="SBO:0000176" id="R_MAR07140" name="S-Adenosyl-L-methionine:thiol S-methyltransferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -163711,7 +163751,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07140">
+            <rdf:Description rdf:about="#R_MAR07140">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.1.1.9"/>
@@ -163724,16 +163764,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02871c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02895c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02871c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02895c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02877c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02889c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02877c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02889c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07620" sboTerm="SBO:0000176" id="MAR07620" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07620" sboTerm="SBO:0000176" id="R_MAR07620" name="Selenomethionine:tRNAMet ligase (AMP-forming)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -163741,7 +163781,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07620">
+            <rdf:Description rdf:about="#R_MAR07620">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.1.1.10"/>
@@ -163754,17 +163794,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02891c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03075c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02891c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03075c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01334c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02893c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02893c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07647" sboTerm="SBO:0000176" id="MAR07647" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07647" sboTerm="SBO:0000176" id="R_MAR07647" name="D-alanine:oxygen oxidoreductase (deaminating)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -163772,7 +163812,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07647">
+            <rdf:Description rdf:about="#R_MAR07647">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.4.3.3"/>
@@ -163786,21 +163826,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01638x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01638x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02041x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02578x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02819x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02578x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02819x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Daao1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08640" sboTerm="SBO:0000176" id="MAR08640" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08640" sboTerm="SBO:0000176" id="R_MAR08640" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -163808,7 +163848,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08640">
+            <rdf:Description rdf:about="#R_MAR08640">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.1.1.37"/>
@@ -163822,13 +163862,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01721n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02882n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01721n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02882n" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01722n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02881n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01722n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02881n" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -163837,7 +163877,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08689" sboTerm="SBO:0000176" id="MAR08689" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08689" sboTerm="SBO:0000176" id="R_MAR08689" name="D-Arginine:oxygen oxidoreductase (deaminating)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -163845,7 +163885,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08689">
+            <rdf:Description rdf:about="#R_MAR08689">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.4.3.3"/>
@@ -163859,21 +163899,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01640x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01640x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01101x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02041x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02578x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01101x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02578x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Daao1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08690" sboTerm="SBO:0000176" id="MAR08690" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08690" sboTerm="SBO:0000176" id="R_MAR08690" name="D-Ornithine:oxygen oxidoreductase (deaminating)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -163881,7 +163921,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08690">
+            <rdf:Description rdf:about="#R_MAR08690">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.4.3.3"/>
@@ -163895,21 +163935,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01740x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01740x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01073x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02041x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02578x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01073x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02578x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Daao1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03748" sboTerm="SBO:0000176" id="MAR03748" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03748" sboTerm="SBO:0000176" id="R_MAR03748" name="3-methyl-2-oxobutanoate:NAD+ oxidoreductase (CoA-mehtylpropanoylating)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -163917,7 +163957,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03748">
+            <rdf:Description rdf:about="#R_MAR03748">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.2.1.25"/>
@@ -163932,14 +163972,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00824m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00824m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01596m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02180m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01596m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02180m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:and>
@@ -163948,7 +163988,7 @@
           </fbc:and>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03751" sboTerm="SBO:0000176" id="MAR03751" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03751" sboTerm="SBO:0000176" id="R_MAR03751" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -163957,7 +163997,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03751">
+            <rdf:Description rdf:about="#R_MAR03751">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.8.1"/>
@@ -163970,12 +164010,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02180m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03103m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02180m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03103m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02468m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03102m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02468m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03102m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -163984,7 +164024,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03753" sboTerm="SBO:0000176" id="MAR03753" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03753" sboTerm="SBO:0000176" id="R_MAR03753" name="(S)-3-Hydroxyisobutyryl-CoA hydro-lyase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -163993,7 +164033,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03753">
+            <rdf:Description rdf:about="#R_MAR03753">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.17"/>
@@ -164008,14 +164048,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02468m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02468m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00785m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00785m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03755" sboTerm="SBO:0000176" id="MAR03755" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03755" sboTerm="SBO:0000176" id="R_MAR03755" name="3-Hydroxy-2-methylpropanoyl-CoA hydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -164024,7 +164064,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03755">
+            <rdf:Description rdf:about="#R_MAR03755">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.2.4"/>
@@ -164038,19 +164078,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00785m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00785m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00784m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00784m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG5044"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03759" sboTerm="SBO:0000176" id="MAR03759" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03759" sboTerm="SBO:0000176" id="R_MAR03759" name="(S)-Methylmalonate semialdehyde:NAD+ oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -164059,7 +164099,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03759">
+            <rdf:Description rdf:about="#R_MAR03759">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.2.1.3"/>
@@ -164075,14 +164115,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00661m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00661m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039m" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02479m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02479m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -164091,7 +164131,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03763" sboTerm="SBO:0000176" id="MAR03763" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03763" sboTerm="SBO:0000176" id="R_MAR03763" name="(S)-Methylmalonyl-CoA hydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -164100,7 +164140,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03763">
+            <rdf:Description rdf:about="#R_MAR03763">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.2.17"/>
@@ -164114,19 +164154,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02479m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02479m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00166m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00166m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG17896"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03767" sboTerm="SBO:0000176" id="MAR03767" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03767" sboTerm="SBO:0000176" id="R_MAR03767" name="4-methyl-2-oxopentanoate:NAD+ oxidoreductase (CoA-mehtylpropanoylating)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -164134,7 +164174,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03767">
+            <rdf:Description rdf:about="#R_MAR03767">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.2.1.25"/>
@@ -164149,14 +164189,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01013m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01013m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01596m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02189m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01596m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02189m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:and>
@@ -164165,7 +164205,7 @@
           </fbc:and>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03769" sboTerm="SBO:0000176" id="MAR03769" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03769" sboTerm="SBO:0000176" id="R_MAR03769" name="3-methylbutanoyl-CoA:electron-transfer flavoprotein 2,3-oxidoreductase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -164174,7 +164214,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03769">
+            <rdf:Description rdf:about="#R_MAR03769">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.8.4"/>
@@ -164187,18 +164227,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00826m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03102m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00826m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03102m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02189m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03103m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02189m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03103m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG6638"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03773" sboTerm="SBO:0000176" id="MAR03773" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03773" sboTerm="SBO:0000176" id="R_MAR03773" name="3-Methylcrotonoyl-CoA:carbon-dioxide ligase (ADP-forming)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -164207,7 +164247,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03773">
+            <rdf:Description rdf:about="#R_MAR03773">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.4.1.4"/>
@@ -164221,15 +164261,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00826m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00826m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00827m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01285m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00827m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:and>
@@ -164238,7 +164278,7 @@
           </fbc:and>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03775" sboTerm="SBO:0000176" id="MAR03775" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03775" sboTerm="SBO:0000176" id="R_MAR03775" name="(S)-3-Hydroxy-3-methylglutaryl-CoA hydro-lyase (trans-3-methylglutaconyl-CoA-forming)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -164247,7 +164287,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03775">
+            <rdf:Description rdf:about="#R_MAR03775">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.18"/>
@@ -164262,17 +164302,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00827m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00827m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02131m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02131m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG8778"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03780" sboTerm="SBO:0000176" id="MAR03780" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03780" sboTerm="SBO:0000176" id="R_MAR03780" name="(S)-3-methyl-2-oxopentanoate:NAD+ 2-oxidoreductase (CoA-methylbutanoylating)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -164280,7 +164320,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03780">
+            <rdf:Description rdf:about="#R_MAR03780">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.2.1.25"/>
@@ -164295,14 +164335,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00669m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00669m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00663m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01596m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00663m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01596m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:and>
@@ -164311,7 +164351,7 @@
           </fbc:and>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03783" sboTerm="SBO:0000176" id="MAR03783" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03783" sboTerm="SBO:0000176" id="R_MAR03783" name="(S)-2-methylbutanoyl-CoA:acceptor 2,3-oxidoreductase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -164320,7 +164360,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03783">
+            <rdf:Description rdf:about="#R_MAR03783">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.8.1"/>
@@ -164334,12 +164374,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00663m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03103m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00663m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03103m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02999m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03102m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02999m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03102m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -164348,7 +164388,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03785" sboTerm="SBO:0000176" id="MAR03785" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03785" sboTerm="SBO:0000176" id="R_MAR03785" name="(2S,3S)-3-Hydroxy-2-methylbutanoyl-CoA hydro-liase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -164357,7 +164397,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03785">
+            <rdf:Description rdf:about="#R_MAR03785">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.17"/>
@@ -164371,14 +164411,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02999m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02999m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00171m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00171m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03790" sboTerm="SBO:0000176" id="MAR03790" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03790" sboTerm="SBO:0000176" id="R_MAR03790" name="(S)-Methylmalonate semialdehyde:oxygen oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -164387,7 +164427,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03790">
+            <rdf:Description rdf:about="#R_MAR03790">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.2.3.1"/>
@@ -164402,20 +164442,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00661c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00661c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02041c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02479c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02479c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="ry"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03792" sboTerm="SBO:0000176" id="MAR03792" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03792" sboTerm="SBO:0000176" id="R_MAR03792" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -164424,7 +164464,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03792">
+            <rdf:Description rdf:about="#R_MAR03792">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.6.1.22"/>
@@ -164439,12 +164479,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00661m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01974m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00661m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01974m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01306m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01633m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01306m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01633m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -164453,7 +164493,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03796" sboTerm="SBO:0000176" id="MAR03796" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03796" sboTerm="SBO:0000176" id="R_MAR03796" name="Propionyladenylate:CoA propionyltransferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -164462,7 +164502,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03796">
+            <rdf:Description rdf:about="#R_MAR03796">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.1"/>
@@ -164477,13 +164517,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01334m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02774m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02774m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02775m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02775m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -164492,7 +164532,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03823" sboTerm="SBO:0000176" id="MAR03823" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03823" sboTerm="SBO:0000176" id="R_MAR03823" name="(2S,3S)-3-hydroxy-2-methylbutanoyl-CoA:NAD+ oxidoreductase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -164501,7 +164541,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03823">
+            <rdf:Description rdf:about="#R_MAR03823">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.178"/>
@@ -164516,19 +164556,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00171m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00171m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00662m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00662m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="scu"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06416" sboTerm="SBO:0000176" id="MAR06416" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06416" sboTerm="SBO:0000176" id="R_MAR06416" name="3-methyl-2-oxobutanoate:[dihydrolipoyllysine-residue (2-methylpropanoyl)transferase] lipoyllysine 2-oxidoreductase (decarboxylating, acceptor-2-methylpropanoylating)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -164537,7 +164577,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06416">
+            <rdf:Description rdf:about="#R_MAR06416">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.2.4.4"/>
@@ -164551,13 +164591,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00824m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02393m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00824m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02393m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01596m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02857m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01596m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02857m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:and>
@@ -164566,7 +164606,7 @@
           </fbc:and>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03986" sboTerm="SBO:0000176" id="MAR03986" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03986" sboTerm="SBO:0000176" id="R_MAR03986" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -164575,7 +164615,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03986">
+            <rdf:Description rdf:about="#R_MAR03986">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105461"/>
@@ -164586,11 +164626,11 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01438e" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02040e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01438e" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02040e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01439e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01439e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -164599,7 +164639,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03988" sboTerm="SBO:0000176" id="MAR03988" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03988" sboTerm="SBO:0000176" id="R_MAR03988" name="chitobiose N-acetylglucosaminohydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -164608,7 +164648,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03988">
+            <rdf:Description rdf:about="#R_MAR03988">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.2.1.52"/>
@@ -164622,11 +164662,11 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01439l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01439l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02527l" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02527l" stoichiometry="2" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -164637,7 +164677,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04124" sboTerm="SBO:0000176" id="MAR04124" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04124" sboTerm="SBO:0000176" id="R_MAR04124" name="UDP-D-glucuronate carboxy-lyase (UDP-D-xylose-forming)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -164646,7 +164686,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04124">
+            <rdf:Description rdf:about="#R_MAR04124">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.1.1.35"/>
@@ -164660,18 +164700,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03109r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03109r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01596r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03112r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01596r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03112r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Uxs"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04158" sboTerm="SBO:0000176" id="MAR04158" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04158" sboTerm="SBO:0000176" id="R_MAR04158" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -164680,7 +164720,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04158">
+            <rdf:Description rdf:about="#R_MAR04158">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.7.23"/>
@@ -164694,19 +164734,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02528c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03130c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02528c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03130c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02759c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03111c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03111c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="mmy"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04159" sboTerm="SBO:0000176" id="MAR04159" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04159" sboTerm="SBO:0000176" id="R_MAR04159" name="UDP-N-acetyl-D-glucosamine 4-epimerase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -164715,7 +164755,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04159">
+            <rdf:Description rdf:about="#R_MAR04159">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/5.1.3.7"/>
@@ -164730,16 +164770,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03110c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03110c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03111c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03111c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Gale"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04299" sboTerm="SBO:0000176" id="MAR04299" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04299" sboTerm="SBO:0000176" id="R_MAR04299" name="D-glucosamine-6-phosphate aminohydrolase (ketol isomerizing)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -164748,7 +164788,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04299">
+            <rdf:Description rdf:about="#R_MAR04299">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.5.99.6"/>
@@ -164762,19 +164802,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01963c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01963c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01845c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02578c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01845c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02578c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Oscillin"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04300" sboTerm="SBO:0000176" id="MAR04300" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04300" sboTerm="SBO:0000176" id="R_MAR04300" name="L-glutamine:D-fructose-6-phosphate isomerase (deaminating)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -164783,7 +164823,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04300">
+            <rdf:Description rdf:about="#R_MAR04300">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.6.1.16"/>
@@ -164798,12 +164838,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01845c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01975c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01845c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01975c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01963c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01974c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01963c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01974c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -164812,7 +164852,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04494" sboTerm="SBO:0000176" id="MAR04494" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04494" sboTerm="SBO:0000176" id="R_MAR04494" name="ATP:D-glucosamine 6-phosphotransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -164821,7 +164861,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04494">
+            <rdf:Description rdf:about="#R_MAR04494">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.1.1"/>
@@ -164835,16 +164875,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01962c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01962c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01963c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01963c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR04524" sboTerm="SBO:0000176" id="MAR04524" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04524" sboTerm="SBO:0000176" id="R_MAR04524" name="ATP:N-acetyl-D-glucosamine 6-phosphotransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -164853,7 +164893,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04524">
+            <rdf:Description rdf:about="#R_MAR04524">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.1.59"/>
@@ -164867,19 +164907,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02527c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02527c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02529c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02529c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG6218"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04529" sboTerm="SBO:0000176" id="MAR04529" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04529" sboTerm="SBO:0000176" id="R_MAR04529" name="phosphoenolpyruvate:N-acetyl-D-mannosamine-6-phosphate C-(1-carboxyvinyl)transferase (phosphate-hydrolysing, 2-carboxy-2-oxoethyl-forming)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -164888,7 +164928,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04529">
+            <rdf:Description rdf:about="#R_MAR04529">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.5.1.56"/>
@@ -164904,19 +164944,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02539c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02696c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02539c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02696c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02544c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02544c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="NANS"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04530" sboTerm="SBO:0000176" id="MAR04530" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04530" sboTerm="SBO:0000176" id="R_MAR04530" name="N-Acetylneuraminate 9-phosphate phosphohydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -164925,7 +164965,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04530">
+            <rdf:Description rdf:about="#R_MAR04530">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.3.29"/>
@@ -164940,18 +164980,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02544c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02544c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02543c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02543c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG15771"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04531" sboTerm="SBO:0000176" id="MAR04531" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04531" sboTerm="SBO:0000176" id="R_MAR04531" name="N-acetylneuraminate,ferrocytochrome-b5:oxygen oxidoreductase (N-acetyl-hydroxylating)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -164960,7 +165000,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04531">
+            <rdf:Description rdf:about="#R_MAR04531">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.18.2"/>
@@ -164975,18 +165015,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02543c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02543c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02565c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02565c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR04532" sboTerm="SBO:0000176" id="MAR04532" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04532" sboTerm="SBO:0000176" id="R_MAR04532" name="CTP:N-glycoloylneuraminate cytidylyltransferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -164995,7 +165035,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04532">
+            <rdf:Description rdf:about="#R_MAR04532">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.7.43"/>
@@ -165009,18 +165049,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01593c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01593c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01623c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02565c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01623c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02565c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Csas"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04533" sboTerm="SBO:0000176" id="MAR04533" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04533" sboTerm="SBO:0000176" id="R_MAR04533" name="CMP-N-acetylneuraminate,ferrocytochrome-b5:oxygen oxidoreductase (N-acetyl-hydroxylating)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -165029,7 +165069,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04533">
+            <rdf:Description rdf:about="#R_MAR04533">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.18.2"/>
@@ -165043,18 +165083,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01593c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01593c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01592c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01592c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR04534" sboTerm="SBO:0000176" id="MAR04534" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04534" sboTerm="SBO:0000176" id="R_MAR04534" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -165063,7 +165103,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04534">
+            <rdf:Description rdf:about="#R_MAR04534">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.18.2"/>
@@ -165076,18 +165116,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01593c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01593c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01592c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01592c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR04536" sboTerm="SBO:0000176" id="MAR04536" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04536" sboTerm="SBO:0000176" id="R_MAR04536" name="CTP:N-acetylneuraminate cytidylyltransferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -165096,7 +165136,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04536">
+            <rdf:Description rdf:about="#R_MAR04536">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.7.43"/>
@@ -165110,18 +165150,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01592n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01592n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759n" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01623n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02543n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01623n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02543n" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Csas"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04628" sboTerm="SBO:0000176" id="MAR04628" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04628" sboTerm="SBO:0000176" id="R_MAR04628" name="acetyl-CoA:D-glucosamine-6-phosphate N-acetyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -165130,7 +165170,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04628">
+            <rdf:Description rdf:about="#R_MAR04628">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.4"/>
@@ -165146,19 +165186,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01261c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01963c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01963c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02529c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02529c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Gnpnat"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04629" sboTerm="SBO:0000176" id="MAR04629" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04629" sboTerm="SBO:0000176" id="R_MAR04629" name="N-Acetyl-D-glucosamine-6-phosphate amidohydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -165166,7 +165206,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04629">
+            <rdf:Description rdf:about="#R_MAR04629">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.5.1.25"/>
@@ -165180,18 +165220,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02529c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02529c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01252c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01963c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01252c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01963c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG17065"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04631" sboTerm="SBO:0000176" id="MAR04631" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04631" sboTerm="SBO:0000176" id="R_MAR04631" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -165200,7 +165240,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04631">
+            <rdf:Description rdf:about="#R_MAR04631">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/5.4.2.3"/>
@@ -165214,16 +165254,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02529c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02529c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02528c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02528c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="nst"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07696" sboTerm="SBO:0000176" id="MAR07696" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07696" sboTerm="SBO:0000176" id="R_MAR07696" name="dTTP:alpha-D-glucose-1-phosphate thymidylyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -165231,7 +165271,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07696">
+            <rdf:Description rdf:about="#R_MAR07696">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/G1PTT"/>
@@ -165244,16 +165284,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01753c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01967c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01753c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01967c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07698" sboTerm="SBO:0000176" id="MAR07698" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07698" sboTerm="SBO:0000176" id="R_MAR07698" name="dTDPglucose 4-epimerase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -165261,7 +165301,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07698">
+            <rdf:Description rdf:about="#R_MAR07698">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/5.1.3.2"/>
@@ -165274,16 +165314,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01750c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01750c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Gale"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08366" sboTerm="SBO:0000176" id="MAR08366" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08366" sboTerm="SBO:0000176" id="R_MAR08366" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -165291,7 +165331,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08366">
+            <rdf:Description rdf:about="#R_MAR08366">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ACGALK"/>
@@ -165303,16 +165343,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02525c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02525c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02526c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02526c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08367" sboTerm="SBO:0000176" id="MAR08367" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08367" sboTerm="SBO:0000176" id="R_MAR08367" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -165320,7 +165360,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08367">
+            <rdf:Description rdf:about="#R_MAR08367">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ACGALK2"/>
@@ -165332,16 +165372,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02193c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02525c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02193c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02525c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02161c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02526c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02161c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02526c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08368" sboTerm="SBO:0000176" id="MAR08368" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08368" sboTerm="SBO:0000176" id="R_MAR08368" name="UTP:N-acetyl-alpha-D-galactosamine-1-phosphate uridylyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -165349,7 +165389,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08368">
+            <rdf:Description rdf:about="#R_MAR08368">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/UAGALDP"/>
@@ -165362,16 +165402,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02526c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03130c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02526c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03130c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02759c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03110c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03110c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08371" sboTerm="SBO:0000176" id="MAR08371" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08371" sboTerm="SBO:0000176" id="R_MAR08371" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -165379,7 +165419,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08371">
+            <rdf:Description rdf:about="#R_MAR08371">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ACNAM9PL2"/>
@@ -165391,19 +165431,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02455c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02696c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02455c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02696c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00772c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00772c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="NANS"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08372" sboTerm="SBO:0000176" id="MAR08372" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08372" sboTerm="SBO:0000176" id="R_MAR08372" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -165411,7 +165451,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08372">
+            <rdf:Description rdf:about="#R_MAR08372">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/KDNH"/>
@@ -165423,15 +165463,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00772c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00772c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00771c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00771c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08375" sboTerm="SBO:0000176" id="MAR08375" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08375" sboTerm="SBO:0000176" id="R_MAR08375" name="chitobiose N-acetylglucosaminohydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -165439,7 +165479,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08375">
+            <rdf:Description rdf:about="#R_MAR08375">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.2.1.14"/>
@@ -165453,11 +165493,11 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01438c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01438c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02527c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02527c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -165466,7 +165506,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08376" sboTerm="SBO:0000176" id="MAR08376" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08376" sboTerm="SBO:0000176" id="R_MAR08376" name="chitobiose N-acetylglucosaminohydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -165474,7 +165514,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08376">
+            <rdf:Description rdf:about="#R_MAR08376">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.2.1.14"/>
@@ -165488,11 +165528,11 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01438e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01438e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02527e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02527e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -165501,7 +165541,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08377" sboTerm="SBO:0000176" id="MAR08377" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08377" sboTerm="SBO:0000176" id="R_MAR08377" name="CTP:N-acetylneuraminate cytidylyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -165509,7 +165549,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08377">
+            <rdf:Description rdf:about="#R_MAR08377">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.7.43"/>
@@ -165523,18 +165563,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01623c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02543c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01623c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02543c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01592c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01592c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Csas"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08672" sboTerm="SBO:0000176" id="MAR08672" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08672" sboTerm="SBO:0000176" id="R_MAR08672" name="UDP-D-glucuronate carboxy-lyase (UDP-D-xylose-forming)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -165542,7 +165582,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08672">
+            <rdf:Description rdf:about="#R_MAR08672">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.1.1.35"/>
@@ -165556,18 +165596,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03109g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03109g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01596g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03112g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01596g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03112g" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Uxs"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08674" sboTerm="SBO:0000176" id="MAR08674" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08674" sboTerm="SBO:0000176" id="R_MAR08674" name="dTDP-4-dehydro-6-deoxy-alpha-D-glucose 3,5-epimerase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -165575,7 +165615,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08674">
+            <rdf:Description rdf:about="#R_MAR08674">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/TDPDRE"/>
@@ -165588,13 +165628,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00946c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00946c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01748c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01748c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08675" sboTerm="SBO:0000176" id="MAR08675" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08675" sboTerm="SBO:0000176" id="R_MAR08675" name="dTDP-beta-L-rhamnose:NADP+ 4-oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -165602,7 +165642,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08675">
+            <rdf:Description rdf:about="#R_MAR08675">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/TDPDRR"/>
@@ -165615,16 +165655,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01748c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01748c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01749c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01749c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05130" sboTerm="SBO:0000176" id="MAR05130" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05130" sboTerm="SBO:0000176" id="R_MAR05130" name="L-Tyrosine:tRNA(Tyr) ligase (AMP-forming)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -165632,7 +165672,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05130">
+            <rdf:Description rdf:about="#R_MAR05130">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.1.1.1"/>
@@ -165645,20 +165685,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03081c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03101c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03081c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03101c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01334c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02421c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02421c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="TyrRS"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05131" sboTerm="SBO:0000176" id="MAR05131" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05131" sboTerm="SBO:0000176" id="R_MAR05131" name="L-Alanine:tRNA(Ala) ligase (AMP-forming)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -165666,7 +165706,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05131">
+            <rdf:Description rdf:about="#R_MAR05131">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.1.1.7"/>
@@ -165679,20 +165719,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01307c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03063c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01307c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03063c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01334c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02335c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02335c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="AlaRS"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05132" sboTerm="SBO:0000176" id="MAR05132" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05132" sboTerm="SBO:0000176" id="R_MAR05132" name="L-Arginine:tRNA(Arg) ligase (AMP-forming)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -165700,7 +165740,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05132">
+            <rdf:Description rdf:about="#R_MAR05132">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.1.1.19"/>
@@ -165713,20 +165753,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01365c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03064c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01365c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03064c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01334c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02340c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02340c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="ArgRS"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05133" sboTerm="SBO:0000176" id="MAR05133" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05133" sboTerm="SBO:0000176" id="R_MAR05133" name="L-Asparagine:tRNA(Asn) ligase (AMP-forming)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -165734,7 +165774,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05133">
+            <rdf:Description rdf:about="#R_MAR05133">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.1.1.22"/>
@@ -165747,20 +165787,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01369c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03065c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01369c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03065c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01334c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02341c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02341c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="AsnRS"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05134" sboTerm="SBO:0000176" id="MAR05134" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05134" sboTerm="SBO:0000176" id="R_MAR05134" name="L-Aspartate:tRNA(Asp) ligase (AMP-forming)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -165768,7 +165808,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05134">
+            <rdf:Description rdf:about="#R_MAR05134">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.1.1.12"/>
@@ -165781,20 +165821,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01370c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03066c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01370c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03066c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01334c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02342c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02342c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="AspRS"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05135" sboTerm="SBO:0000176" id="MAR05135" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05135" sboTerm="SBO:0000176" id="R_MAR05135" name="L-Cysteine:tRNA(Cys) ligase (AMP-forming)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -165802,7 +165842,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05135">
+            <rdf:Description rdf:about="#R_MAR05135">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.1.1.16"/>
@@ -165815,20 +165855,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01628c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03067c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01628c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03067c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01334c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02351c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02351c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CysRS"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05136" sboTerm="SBO:0000176" id="MAR05136" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05136" sboTerm="SBO:0000176" id="R_MAR05136" name="L-Glutamine:tRNA(Gln) ligase (AMP-forming)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -165836,7 +165876,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05136">
+            <rdf:Description rdf:about="#R_MAR05136">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.1.1.18"/>
@@ -165849,20 +165889,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01975c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03068c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01975c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03068c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01334c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02376c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02376c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="GlnRS"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05137" sboTerm="SBO:0000176" id="MAR05137" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05137" sboTerm="SBO:0000176" id="R_MAR05137" name="L-glutamate:tRNA(Glu) ligase (AMP-forming)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -165870,7 +165910,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05137">
+            <rdf:Description rdf:about="#R_MAR05137">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.1.1.17"/>
@@ -165883,20 +165923,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01974c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03069c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01974c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03069c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01334c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02377c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02377c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="GluProRS"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05138" sboTerm="SBO:0000176" id="MAR05138" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05138" sboTerm="SBO:0000176" id="R_MAR05138" name="glycine:tRNA(Gly) ligase (AMP-forming)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -165904,7 +165944,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05138">
+            <rdf:Description rdf:about="#R_MAR05138">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.1.1.14"/>
@@ -165919,20 +165959,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01986c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03070c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03070c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01334c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02006c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02006c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="GlyRS"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05139" sboTerm="SBO:0000176" id="MAR05139" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05139" sboTerm="SBO:0000176" id="R_MAR05139" name="L-Histidine:tRNA(His) ligase (AMP-forming)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -165940,7 +165980,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05139">
+            <rdf:Description rdf:about="#R_MAR05139">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.1.1.21"/>
@@ -165953,20 +165993,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02125c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03071c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02125c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03071c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01334c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02380c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02380c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="HisRS"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05140" sboTerm="SBO:0000176" id="MAR05140" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05140" sboTerm="SBO:0000176" id="R_MAR05140" name="L-Isoleucine:tRNA(Ile) ligase (AMP-forming)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -165974,7 +166014,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05140">
+            <rdf:Description rdf:about="#R_MAR05140">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.1.1.5"/>
@@ -165987,20 +166027,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02184c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03072c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02184c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03072c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01334c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02401c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02401c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="IleRS"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05141" sboTerm="SBO:0000176" id="MAR05141" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05141" sboTerm="SBO:0000176" id="R_MAR05141" name="L-Leucine:tRNA(Leu) ligase (AMP-forming)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -166008,7 +166048,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05141">
+            <rdf:Description rdf:about="#R_MAR05141">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.1.1.4"/>
@@ -166021,20 +166061,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02360c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03073c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02360c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03073c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01334c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02404c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02404c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="LeuRS"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05142" sboTerm="SBO:0000176" id="MAR05142" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05142" sboTerm="SBO:0000176" id="R_MAR05142" name="L-lysine:tRNALys ligase (AMP-forming)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -166042,7 +166082,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05142">
+            <rdf:Description rdf:about="#R_MAR05142">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.1.1.6"/>
@@ -166055,20 +166095,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02426c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03074c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02426c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03074c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01334c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02405c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02405c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="LysRS"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05143" sboTerm="SBO:0000176" id="MAR05143" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05143" sboTerm="SBO:0000176" id="R_MAR05143" name="L-Methionine:tRNAMet ligase (AMP-forming)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -166076,7 +166116,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05143">
+            <rdf:Description rdf:about="#R_MAR05143">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.1.1.10"/>
@@ -166089,20 +166129,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02471c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03075c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02471c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03075c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01334c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02408c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02408c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="MetRS"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05144" sboTerm="SBO:0000176" id="MAR05144" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05144" sboTerm="SBO:0000176" id="R_MAR05144" name="10-Formyltetrahydrofolate:L-methionyl-tRNA N-formyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -166110,7 +166150,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05144">
+            <rdf:Description rdf:about="#R_MAR05144">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.1.2.9"/>
@@ -166123,18 +166163,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00266c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02408c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00266c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02408c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02576c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02980c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02576c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02980c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG1750"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05145" sboTerm="SBO:0000176" id="MAR05145" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05145" sboTerm="SBO:0000176" id="R_MAR05145" name="L-Phenylalanine:tRNA(Ala) ligase (AMP-forming)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -166142,7 +166182,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05145">
+            <rdf:Description rdf:about="#R_MAR05145">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.1.1.20"/>
@@ -166155,17 +166195,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02724c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03076c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02724c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03076c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01334c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02412c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02412c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05146" sboTerm="SBO:0000176" id="MAR05146" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05146" sboTerm="SBO:0000176" id="R_MAR05146" name="L-proline:tRNA(Pro) ligase (AMP-forming)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -166173,7 +166213,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05146">
+            <rdf:Description rdf:about="#R_MAR05146">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.1.1.15"/>
@@ -166186,20 +166226,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02770c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03077c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02770c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03077c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01334c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02415c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02415c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="GluProRS"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05147" sboTerm="SBO:0000176" id="MAR05147" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05147" sboTerm="SBO:0000176" id="R_MAR05147" name="L-Serine:tRNA(Ser) ligase (AMP-forming)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -166207,7 +166247,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05147">
+            <rdf:Description rdf:about="#R_MAR05147">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.1.1.11"/>
@@ -166220,20 +166260,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02896c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03078c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02896c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03078c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01334c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02416c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02416c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="SerRS"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05148" sboTerm="SBO:0000176" id="MAR05148" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05148" sboTerm="SBO:0000176" id="R_MAR05148" name="L-Threonine:tRNA(Thr) ligase (AMP-forming)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -166241,7 +166281,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05148">
+            <rdf:Description rdf:about="#R_MAR05148">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.1.1.3"/>
@@ -166254,20 +166294,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02993c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03079c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02993c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03079c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01334c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02419c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02419c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="ThrRS"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05149" sboTerm="SBO:0000176" id="MAR05149" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05149" sboTerm="SBO:0000176" id="R_MAR05149" name="L-Tryptophan -tRNA(Trp) ligase (AMP-forming)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -166275,7 +166315,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05149">
+            <rdf:Description rdf:about="#R_MAR05149">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.1.1.2"/>
@@ -166288,20 +166328,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03080c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03089c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03080c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03089c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01334c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02420c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02420c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="TrpRS"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05150" sboTerm="SBO:0000176" id="MAR05150" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05150" sboTerm="SBO:0000176" id="R_MAR05150" name="L-Valine:tRNAVal ligase (AMP-forming)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -166309,7 +166349,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05150">
+            <rdf:Description rdf:about="#R_MAR05150">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.1.1.9"/>
@@ -166322,20 +166362,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03082c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03135c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03082c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03135c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01334c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02423c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02423c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="ValRS"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07174" sboTerm="SBO:0000176" id="MAR07174" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07174" sboTerm="SBO:0000176" id="R_MAR07174" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -166343,7 +166383,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07174">
+            <rdf:Description rdf:about="#R_MAR07174">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.147"/>
@@ -166357,19 +166397,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03000g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03111g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03000g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03111g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01608g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01608g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106g" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="brn"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07175" sboTerm="SBO:0000176" id="MAR07175" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07175" sboTerm="SBO:0000176" id="R_MAR07175" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -166377,7 +166417,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07175">
+            <rdf:Description rdf:about="#R_MAR07175">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.148"/>
@@ -166391,19 +166431,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01608g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03111g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01608g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03111g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01609g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01609g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106g" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="brn"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07181" sboTerm="SBO:0000176" id="MAR07181" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07181" sboTerm="SBO:0000176" id="R_MAR07181" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -166411,7 +166451,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07181">
+            <rdf:Description rdf:about="#R_MAR07181">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.-"/>
@@ -166424,16 +166464,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01871g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03107g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01871g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03107g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01872g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01872g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106g" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07197" sboTerm="SBO:0000176" id="MAR07197" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07197" sboTerm="SBO:0000176" id="R_MAR07197" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -166441,7 +166481,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07197">
+            <rdf:Description rdf:about="#R_MAR07197">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_7197"/>
@@ -166451,15 +166491,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00196c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02896c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00196c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02896c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00205c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00205c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07436" sboTerm="SBO:0000176" id="MAR07436" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07436" sboTerm="SBO:0000176" id="R_MAR07436" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -166467,7 +166507,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07436">
+            <rdf:Description rdf:about="#R_MAR07436">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.41"/>
@@ -166481,13 +166521,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00205g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03110g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00205g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03110g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03000g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03000g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106g" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -166501,7 +166541,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07438" sboTerm="SBO:0000176" id="MAR07438" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07438" sboTerm="SBO:0000176" id="R_MAR07438" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -166509,7 +166549,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07438">
+            <rdf:Description rdf:about="#R_MAR07438">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.122"/>
@@ -166523,13 +166563,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03000g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03107g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03000g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03107g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02960g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02960g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106g" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -166538,7 +166578,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08254" sboTerm="SBO:0000176" id="MAR08254" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08254" sboTerm="SBO:0000176" id="R_MAR08254" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -166546,7 +166586,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08254">
+            <rdf:Description rdf:about="#R_MAR08254">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.-"/>
@@ -166559,16 +166599,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02960g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03111g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02960g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03111g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01954g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01954g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106g" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08255" sboTerm="SBO:0000176" id="MAR08255" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08255" sboTerm="SBO:0000176" id="R_MAR08255" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -166576,7 +166616,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08255">
+            <rdf:Description rdf:about="#R_MAR08255">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.-"/>
@@ -166589,16 +166629,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01607g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03111g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01607g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03111g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01955g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01955g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106g" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08256" sboTerm="SBO:0000176" id="MAR08256" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08256" sboTerm="SBO:0000176" id="R_MAR08256" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -166606,7 +166646,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08256">
+            <rdf:Description rdf:about="#R_MAR08256">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CORE6GTg"/>
@@ -166618,16 +166658,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03000g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03110g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03000g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03110g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01610g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01610g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106g" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08258" sboTerm="SBO:0000176" id="MAR08258" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08258" sboTerm="SBO:0000176" id="R_MAR08258" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -166635,7 +166675,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08258">
+            <rdf:Description rdf:about="#R_MAR08258">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/N4Tg"/>
@@ -166647,16 +166687,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01611g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03107g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01611g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03107g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01801g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01801g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106g" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08260" sboTerm="SBO:0000176" id="MAR08260" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08260" sboTerm="SBO:0000176" id="R_MAR08260" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -166664,7 +166704,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08260">
+            <rdf:Description rdf:about="#R_MAR08260">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CORE8GTg"/>
@@ -166676,16 +166716,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03000g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03110g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03000g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03110g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01612g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01612g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106g" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08261" sboTerm="SBO:0000176" id="MAR08261" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08261" sboTerm="SBO:0000176" id="R_MAR08261" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -166693,7 +166733,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08261">
+            <rdf:Description rdf:about="#R_MAR08261">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/COt"/>
@@ -166705,16 +166745,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03000g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03107g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03000g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03107g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01613g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01613g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106g" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01532" sboTerm="SBO:0000176" id="MAR01532" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01532" sboTerm="SBO:0000176" id="R_MAR01532" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -166723,7 +166763,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01532">
+            <rdf:Description rdf:about="#R_MAR01532">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.5.1.10"/>
@@ -166737,12 +166777,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02759c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03026c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03026c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01706c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01806c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01706c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01806c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -166751,7 +166791,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07254" sboTerm="SBO:0000176" id="MAR07254" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07254" sboTerm="SBO:0000176" id="R_MAR07254" name="(2E,6E)-farnesyl-diphosphate:isopentenyl-diphosphate cistransferase (adding 10-55 isopentenyl units)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -166759,7 +166799,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07254">
+            <rdf:Description rdf:about="#R_MAR07254">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.5.1.87"/>
@@ -166775,18 +166815,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02187c" stoichiometry="16" constant="true"/>
-          <speciesReference species="MAM03026c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02187c" stoichiometry="16" constant="true"/>
+          <speciesReference species="M_MAM03026c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01657c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759c" stoichiometry="16" constant="true"/>
+          <speciesReference species="M_MAM01657c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759c" stoichiometry="16" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Dhdds"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07258" sboTerm="SBO:0000176" id="MAR07258" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07258" sboTerm="SBO:0000176" id="R_MAR07258" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -166794,7 +166834,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07258">
+            <rdf:Description rdf:about="#R_MAR07258">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/DEDOLP1_L"/>
@@ -166807,16 +166847,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01657c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01657c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01658c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01658c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07259" sboTerm="SBO:0000176" id="MAR07259" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07259" sboTerm="SBO:0000176" id="R_MAR07259" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -166824,7 +166864,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07259">
+            <rdf:Description rdf:about="#R_MAR07259">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/DEDOLP2_L"/>
@@ -166837,15 +166877,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01658c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01658c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01656c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01656c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07260" sboTerm="SBO:0000176" id="MAR07260" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07260" sboTerm="SBO:0000176" id="R_MAR07260" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -166853,7 +166893,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07260">
+            <rdf:Description rdf:about="#R_MAR07260">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/DEDOLR_L"/>
@@ -166866,16 +166906,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01656c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01656c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01730c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01730c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07261" sboTerm="SBO:0000176" id="MAR07261" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07261" sboTerm="SBO:0000176" id="R_MAR07261" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -166883,7 +166923,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07261">
+            <rdf:Description rdf:about="#R_MAR07261">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.256"/>
@@ -166899,18 +166939,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01733r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01733r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01730r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01730r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Alg10"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07263" sboTerm="SBO:0000176" id="MAR07263" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07263" sboTerm="SBO:0000176" id="R_MAR07263" name="CTP:dolichol O-phosphotransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -166918,7 +166958,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07263">
+            <rdf:Description rdf:about="#R_MAR07263">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.1.108"/>
@@ -166932,19 +166972,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01623c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01730c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01623c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01730c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01424c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01733c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01424c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01733c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG8311"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07264" sboTerm="SBO:0000176" id="MAR07264" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07264" sboTerm="SBO:0000176" id="R_MAR07264" name="UDP-N-acetyl-D-glucosamine:dolichyl-phosphate N-acetyl-D-glucosamine phosphotransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -166952,7 +166992,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07264">
+            <rdf:Description rdf:about="#R_MAR07264">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.8.15"/>
@@ -166966,18 +167006,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01733c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03111c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01733c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03111c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02522c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03114c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02522c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03114c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Alg7"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07265" sboTerm="SBO:0000176" id="MAR07265" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07265" sboTerm="SBO:0000176" id="R_MAR07265" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -166985,7 +167025,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07265">
+            <rdf:Description rdf:about="#R_MAR07265">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.141"/>
@@ -167000,13 +167040,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02522c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03111c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02522c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03111c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02498c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02498c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -167015,7 +167055,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07266" sboTerm="SBO:0000176" id="MAR07266" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07266" sboTerm="SBO:0000176" id="R_MAR07266" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -167023,7 +167063,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07266">
+            <rdf:Description rdf:about="#R_MAR07266">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.142"/>
@@ -167037,19 +167077,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01951c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02498c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01951c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02498c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01390c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01948c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01390c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01948c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Alg1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07267" sboTerm="SBO:0000176" id="MAR07267" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07267" sboTerm="SBO:0000176" id="R_MAR07267" name="GDPmannose:glycolipid 1,3-alpha-D-mannosyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -167057,7 +167097,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07267">
+            <rdf:Description rdf:about="#R_MAR07267">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.132"/>
@@ -167071,19 +167111,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01390c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01951c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01390c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01951c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01323c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01948c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01323c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01948c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Alg2"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07268" sboTerm="SBO:0000176" id="MAR07268" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07268" sboTerm="SBO:0000176" id="R_MAR07268" name="GDP-D-mannose:D-Man-alpha-(1-&gt;3)-D-Man-beta-(1-&gt;4)-D-GlcNAc-beta-(1-&gt;4)-D-GlcNAc-diphosphodolichol alpha-6-mannosyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -167091,7 +167131,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07268">
+            <rdf:Description rdf:about="#R_MAR07268">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.257"/>
@@ -167106,19 +167146,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01323c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01951c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01323c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01951c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01865c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01948c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01865c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01948c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Alg2"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07269" sboTerm="SBO:0000176" id="MAR07269" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07269" sboTerm="SBO:0000176" id="R_MAR07269" name="GDP-mannose:glycolipid 1,2-alpha-D-mannosyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -167126,7 +167166,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07269">
+            <rdf:Description rdf:about="#R_MAR07269">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.131"/>
@@ -167141,19 +167181,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01865c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01951c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01865c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01951c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01895c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01948c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01895c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01948c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Alg11"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07270" sboTerm="SBO:0000176" id="MAR07270" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07270" sboTerm="SBO:0000176" id="R_MAR07270" name="GDP-mannose:glycolipid 1,2-alpha-D-mannosyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -167161,7 +167201,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07270">
+            <rdf:Description rdf:about="#R_MAR07270">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.131"/>
@@ -167176,19 +167216,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01895c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01951c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01895c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01951c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01866c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01948c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01866c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01948c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Alg11"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07271" sboTerm="SBO:0000176" id="MAR07271" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07271" sboTerm="SBO:0000176" id="R_MAR07271" name="GDPmannose:dolichyl-phosphate O-beta-D-mannosyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 2</p>
@@ -167196,7 +167236,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07271">
+            <rdf:Description rdf:about="#R_MAR07271">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.83"/>
@@ -167211,12 +167251,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01733c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01951c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01733c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01951c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01734c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01948c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01734c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01948c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -167229,7 +167269,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07274" sboTerm="SBO:0000176" id="MAR07274" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07274" sboTerm="SBO:0000176" id="R_MAR07274" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -167237,7 +167277,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07274">
+            <rdf:Description rdf:about="#R_MAR07274">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.258"/>
@@ -167252,19 +167292,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01734r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01866r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01734r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01866r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01733r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01896r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01733r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01896r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Alg3"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07275" sboTerm="SBO:0000176" id="MAR07275" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07275" sboTerm="SBO:0000176" id="R_MAR07275" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 2</p>
@@ -167272,7 +167312,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07275">
+            <rdf:Description rdf:about="#R_MAR07275">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.259"/>
@@ -167287,13 +167327,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01734r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01896r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01734r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01896r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01733r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01897r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01733r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01897r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -167306,7 +167346,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07276" sboTerm="SBO:0000176" id="MAR07276" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07276" sboTerm="SBO:0000176" id="R_MAR07276" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 2</p>
@@ -167314,7 +167354,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07276">
+            <rdf:Description rdf:about="#R_MAR07276">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.260"/>
@@ -167329,13 +167369,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01734r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01897r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01734r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01897r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01733r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01898r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01733r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01898r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -167344,7 +167384,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07277" sboTerm="SBO:0000176" id="MAR07277" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07277" sboTerm="SBO:0000176" id="R_MAR07277" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -167352,7 +167392,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07277">
+            <rdf:Description rdf:about="#R_MAR07277">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.261"/>
@@ -167367,19 +167407,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01734r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01898r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01734r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01898r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01733r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01867r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01733r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01867r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Alg9"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07278" sboTerm="SBO:0000176" id="MAR07278" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07278" sboTerm="SBO:0000176" id="R_MAR07278" name="UDPglucose:dolichyl-phosphate beta-D-glucosyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -167387,7 +167427,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07278">
+            <rdf:Description rdf:about="#R_MAR07278">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.117"/>
@@ -167400,18 +167440,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01733r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03108r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01733r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03108r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01731r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01731r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="wol"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07279" sboTerm="SBO:0000176" id="MAR07279" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07279" sboTerm="SBO:0000176" id="R_MAR07279" name="dolichyl beta-D-glucosyl phosphate:D-Man-alpha-(1-&gt;2)-D-Man-alpha-(1-&gt;2)-D-Man-alpha-(1-&gt;3)-[D-Man-alpha-(1-&gt;2)-D-Man-alpha-(1-&gt;3)-[D-Man-alpha-(1-&gt;2)-D-Man-alpha-(1-&gt;6)]-D-Man-alpha-(1-&gt;6)]-D-Man-beta-(1-&gt;4)-D-GlcNAc-beta-(1-&gt;4)-D-GlcNAc-diphosphodolichol alpha-1,3-glucosyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -167419,7 +167459,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07279">
+            <rdf:Description rdf:about="#R_MAR07279">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.267"/>
@@ -167434,19 +167474,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01731r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01867r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01731r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01867r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01733r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01899r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01733r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01899r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="gny"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07280" sboTerm="SBO:0000176" id="MAR07280" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07280" sboTerm="SBO:0000176" id="R_MAR07280" name="dolichyl beta-D-glucosyl phosphate:D-Glc-alpha-(1-&gt;3)-D-Man-alpha-(1-&gt;2)-D-Man-alpha-(1-&gt;2)-D-Man-alpha-(1-&gt;3)-[D-Man-alpha-(1-&gt;2)-D-Man-alpha-(1-&gt;3)-[D-Man-alpha-(1-&gt;2)-D-Man-alpha-(1-&gt;6)]-D-Man-alpha-(1-&gt;6)]-D-Man-beta-(1-&gt;4)-D-GlcNAc-beta-(1-&gt;4)-D-GlcNAc-diphosphodolichol alpha-1,3-glucosyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -167454,7 +167494,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07280">
+            <rdf:Description rdf:about="#R_MAR07280">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.265"/>
@@ -167468,19 +167508,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01731r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01899r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01731r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01899r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01733r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01900r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01733r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01900r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="xit"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07281" sboTerm="SBO:0000176" id="MAR07281" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07281" sboTerm="SBO:0000176" id="R_MAR07281" name="dolichyl beta-D-glucosyl phosphate:D-Glc-alpha-(1-&gt;3)-D-Glc-alpha-(1-&gt;3)-D-Man-alpha-(1-&gt;2)-D-Man-alpha-(1-&gt;2)-D-Man-alpha-(1-&gt;3)-[D-Man-alpha-(1-&gt;2)-D-Man-alpha-(1-&gt;3)-[D-Man-alpha-(1-&gt;2)-D-Man-alpha-(1-&gt;6)]-D-Man-alpha-(1-&gt;6)]-D-Man-beta-(1-&gt;4)-D-GlcNAc-beta-(1-&gt;4)-D-GlcNAc-diphosphodolichol alpha-1,2-glucosyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 2</p>
@@ -167488,7 +167528,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07281">
+            <rdf:Description rdf:about="#R_MAR07281">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.256"/>
@@ -167502,13 +167542,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01731r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01900r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01731r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01900r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00154r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01733r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00154r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01733r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -167517,7 +167557,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07285" sboTerm="SBO:0000176" id="MAR07285" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07285" sboTerm="SBO:0000176" id="R_MAR07285" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -167525,7 +167565,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07285">
+            <rdf:Description rdf:about="#R_MAR07285">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.99.18"/>
@@ -167539,16 +167579,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00154r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00198r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00154r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00198r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00140r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01732r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00140r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01732r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07286" sboTerm="SBO:0000176" id="MAR07286" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07286" sboTerm="SBO:0000176" id="R_MAR07286" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -167556,7 +167596,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07286">
+            <rdf:Description rdf:about="#R_MAR07286">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.2.1.106"/>
@@ -167569,18 +167609,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00140r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00140r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00139r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01965r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00139r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01965r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="GCS1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07287" sboTerm="SBO:0000176" id="MAR07287" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07287" sboTerm="SBO:0000176" id="R_MAR07287" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -167588,7 +167628,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07287">
+            <rdf:Description rdf:about="#R_MAR07287">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.2.1.84"/>
@@ -167601,15 +167641,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00139r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00139r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00138r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01965r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00138r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01965r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07288" sboTerm="SBO:0000176" id="MAR07288" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07288" sboTerm="SBO:0000176" id="R_MAR07288" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -167617,7 +167657,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07288">
+            <rdf:Description rdf:about="#R_MAR07288">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/MAN2_7Cer"/>
@@ -167629,15 +167669,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00138r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00138r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01971r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02453r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01971r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02453r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07289" sboTerm="SBO:0000176" id="MAR07289" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07289" sboTerm="SBO:0000176" id="R_MAR07289" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -167645,7 +167685,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07289">
+            <rdf:Description rdf:about="#R_MAR07289">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.2.1.113"/>
@@ -167658,15 +167698,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00138r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00138r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01970r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02453r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01970r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02453r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07290" sboTerm="SBO:0000176" id="MAR07290" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07290" sboTerm="SBO:0000176" id="R_MAR07290" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -167674,7 +167714,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07290">
+            <rdf:Description rdf:about="#R_MAR07290">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/MG3er"/>
@@ -167686,15 +167726,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00138r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00138r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00153r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01965r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00153r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01965r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07291" sboTerm="SBO:0000176" id="MAR07291" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07291" sboTerm="SBO:0000176" id="R_MAR07291" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -167702,7 +167742,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07291">
+            <rdf:Description rdf:about="#R_MAR07291">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.2.1.113"/>
@@ -167715,15 +167755,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01971r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01971r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01969r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02453r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01969r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02453r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07292" sboTerm="SBO:0000176" id="MAR07292" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07292" sboTerm="SBO:0000176" id="R_MAR07292" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -167731,7 +167771,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07292">
+            <rdf:Description rdf:about="#R_MAR07292">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/MAN2_6B1er"/>
@@ -167743,15 +167783,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01970r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01970r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01969r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02453r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01969r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02453r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07293" sboTerm="SBO:0000176" id="MAR07293" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07293" sboTerm="SBO:0000176" id="R_MAR07293" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -167759,7 +167799,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07293">
+            <rdf:Description rdf:about="#R_MAR07293">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.2.1.113"/>
@@ -167772,15 +167812,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00153r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00153r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00151r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02453r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00151r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02453r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07294" sboTerm="SBO:0000185" id="MAR07294" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07294" sboTerm="SBO:0000185" id="R_MAR07294" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -167788,7 +167828,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07294">
+            <rdf:Description rdf:about="#R_MAR07294">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/G1M6MASNB1terg"/>
@@ -167800,13 +167840,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01969r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01969r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01969g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01969g" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07295" sboTerm="SBO:0000185" id="MAR07295" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07295" sboTerm="SBO:0000185" id="R_MAR07295" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -167814,7 +167854,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07295">
+            <rdf:Description rdf:about="#R_MAR07295">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/G3M8MASNterg"/>
@@ -167826,13 +167866,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00140r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00140r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00140g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00140g" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07296" sboTerm="SBO:0000185" id="MAR07296" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07296" sboTerm="SBO:0000185" id="R_MAR07296" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -167840,7 +167880,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07296">
+            <rdf:Description rdf:about="#R_MAR07296">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/G2M8MASNterg"/>
@@ -167852,13 +167892,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00139r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00139r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00139g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00139g" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07297" sboTerm="SBO:0000185" id="MAR07297" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07297" sboTerm="SBO:0000185" id="R_MAR07297" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -167866,7 +167906,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07297">
+            <rdf:Description rdf:about="#R_MAR07297">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/G1M8MASNterg"/>
@@ -167878,13 +167918,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00138r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00138r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00138g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00138g" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07298" sboTerm="SBO:0000185" id="MAR07298" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07298" sboTerm="SBO:0000185" id="R_MAR07298" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -167892,7 +167932,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07298">
+            <rdf:Description rdf:about="#R_MAR07298">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/G1M7MASNBterg"/>
@@ -167904,13 +167944,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01970r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01970r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01970g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01970g" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07299" sboTerm="SBO:0000185" id="MAR07299" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07299" sboTerm="SBO:0000185" id="R_MAR07299" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -167918,7 +167958,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07299">
+            <rdf:Description rdf:about="#R_MAR07299">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/G1M7MASNCterg"/>
@@ -167930,13 +167970,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01971r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01971r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01971g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01971g" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07300" sboTerm="SBO:0000185" id="MAR07300" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07300" sboTerm="SBO:0000185" id="R_MAR07300" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -167944,7 +167984,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07300">
+            <rdf:Description rdf:about="#R_MAR07300">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/M7MASNBterg"/>
@@ -167956,13 +167996,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00151r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00151r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00151g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00151g" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07301" sboTerm="SBO:0000176" id="MAR07301" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07301" sboTerm="SBO:0000176" id="R_MAR07301" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -167970,7 +168010,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07301">
+            <rdf:Description rdf:about="#R_MAR07301">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ENMAN3g"/>
@@ -167981,16 +168021,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00140g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040g" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM00140g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040g" stoichiometry="4" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00150g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01965g" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM02453g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00150g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01965g" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM02453g" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07302" sboTerm="SBO:0000176" id="MAR07302" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07302" sboTerm="SBO:0000176" id="R_MAR07302" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -167998,7 +168038,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07302">
+            <rdf:Description rdf:about="#R_MAR07302">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ENMAN2g"/>
@@ -168009,16 +168049,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00139g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040g" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM00139g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040g" stoichiometry="3" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00150g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01965g" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02453g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00150g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01965g" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02453g" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07303" sboTerm="SBO:0000176" id="MAR07303" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07303" sboTerm="SBO:0000176" id="R_MAR07303" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -168026,7 +168066,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07303">
+            <rdf:Description rdf:about="#R_MAR07303">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ENMAN1g"/>
@@ -168037,16 +168077,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00138g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040g" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM00138g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040g" stoichiometry="2" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00150g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01965g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02453g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00150g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01965g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02453g" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07304" sboTerm="SBO:0000176" id="MAR07304" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07304" sboTerm="SBO:0000176" id="R_MAR07304" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -168054,7 +168094,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07304">
+            <rdf:Description rdf:about="#R_MAR07304">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ENMAN4g"/>
@@ -168065,16 +168105,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01971g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040g" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01971g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040g" stoichiometry="2" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00149g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01965g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02453g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00149g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01965g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02453g" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07305" sboTerm="SBO:0000176" id="MAR07305" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07305" sboTerm="SBO:0000176" id="R_MAR07305" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -168082,7 +168122,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07305">
+            <rdf:Description rdf:about="#R_MAR07305">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ENMAN5g"/>
@@ -168093,16 +168133,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01970g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040g" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01970g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040g" stoichiometry="2" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00148g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01965g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02453g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00148g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01965g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02453g" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07306" sboTerm="SBO:0000176" id="MAR07306" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07306" sboTerm="SBO:0000176" id="R_MAR07306" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -168110,7 +168150,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07306">
+            <rdf:Description rdf:about="#R_MAR07306">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ENMAN6g"/>
@@ -168121,16 +168161,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01969g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040g" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01969g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040g" stoichiometry="2" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00143g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01965g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02453g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00143g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01965g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02453g" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07308" sboTerm="SBO:0000176" id="MAR07308" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07308" sboTerm="SBO:0000176" id="R_MAR07308" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -168138,7 +168178,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07308">
+            <rdf:Description rdf:about="#R_MAR07308">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.2.1.113"/>
@@ -168151,15 +168191,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00153g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00153g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00150g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02453g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00150g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02453g" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07309" sboTerm="SBO:0000176" id="MAR07309" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07309" sboTerm="SBO:0000176" id="R_MAR07309" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -168167,7 +168207,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07309">
+            <rdf:Description rdf:about="#R_MAR07309">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.2.1.113"/>
@@ -168180,15 +168220,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00153g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00153g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00152g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02453g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00152g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02453g" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07310" sboTerm="SBO:0000176" id="MAR07310" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07310" sboTerm="SBO:0000176" id="R_MAR07310" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -168196,7 +168236,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07310">
+            <rdf:Description rdf:about="#R_MAR07310">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.2.1.113"/>
@@ -168209,15 +168249,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00150g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00150g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00146g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02453g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00146g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02453g" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07311" sboTerm="SBO:0000176" id="MAR07311" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07311" sboTerm="SBO:0000176" id="R_MAR07311" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -168225,7 +168265,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07311">
+            <rdf:Description rdf:about="#R_MAR07311">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.2.1.113"/>
@@ -168238,15 +168278,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00151g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00151g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00147g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02453g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00147g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02453g" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07312" sboTerm="SBO:0000176" id="MAR07312" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07312" sboTerm="SBO:0000176" id="R_MAR07312" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -168254,7 +168294,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07312">
+            <rdf:Description rdf:about="#R_MAR07312">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.2.1.113"/>
@@ -168267,15 +168307,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00151g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00151g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00148g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02453g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00148g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02453g" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07313" sboTerm="SBO:0000176" id="MAR07313" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07313" sboTerm="SBO:0000176" id="R_MAR07313" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -168283,7 +168323,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07313">
+            <rdf:Description rdf:about="#R_MAR07313">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.2.1.113"/>
@@ -168296,15 +168336,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00150g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00150g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00149g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02453g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00149g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02453g" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07314" sboTerm="SBO:0000176" id="MAR07314" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07314" sboTerm="SBO:0000176" id="R_MAR07314" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -168312,7 +168352,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07314">
+            <rdf:Description rdf:about="#R_MAR07314">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.2.1.113"/>
@@ -168325,15 +168365,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00152g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00152g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00149g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02453g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00149g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02453g" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07315" sboTerm="SBO:0000176" id="MAR07315" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07315" sboTerm="SBO:0000176" id="R_MAR07315" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -168341,7 +168381,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07315">
+            <rdf:Description rdf:about="#R_MAR07315">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.2.1.113"/>
@@ -168354,15 +168394,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00146g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00146g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00145g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02453g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00145g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02453g" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07316" sboTerm="SBO:0000176" id="MAR07316" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07316" sboTerm="SBO:0000176" id="R_MAR07316" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -168370,7 +168410,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07316">
+            <rdf:Description rdf:about="#R_MAR07316">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.2.1.113"/>
@@ -168383,15 +168423,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00147g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00147g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00143g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02453g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00143g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02453g" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07317" sboTerm="SBO:0000176" id="MAR07317" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07317" sboTerm="SBO:0000176" id="R_MAR07317" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -168399,7 +168439,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07317">
+            <rdf:Description rdf:about="#R_MAR07317">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.2.1.113"/>
@@ -168412,15 +168452,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00148g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00148g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00143g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02453g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00143g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02453g" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07318" sboTerm="SBO:0000176" id="MAR07318" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07318" sboTerm="SBO:0000176" id="R_MAR07318" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -168428,7 +168468,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07318">
+            <rdf:Description rdf:about="#R_MAR07318">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.2.1.113"/>
@@ -168441,15 +168481,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00148g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00148g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00144g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02453g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00144g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02453g" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07319" sboTerm="SBO:0000176" id="MAR07319" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07319" sboTerm="SBO:0000176" id="R_MAR07319" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -168457,7 +168497,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07319">
+            <rdf:Description rdf:about="#R_MAR07319">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.2.1.113"/>
@@ -168470,15 +168510,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00149g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00149g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00145g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02453g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00145g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02453g" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07320" sboTerm="SBO:0000176" id="MAR07320" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07320" sboTerm="SBO:0000176" id="R_MAR07320" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -168486,7 +168526,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07320">
+            <rdf:Description rdf:about="#R_MAR07320">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.2.1.113"/>
@@ -168499,15 +168539,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00145g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00145g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00142g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02453g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00142g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02453g" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07321" sboTerm="SBO:0000176" id="MAR07321" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07321" sboTerm="SBO:0000176" id="R_MAR07321" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -168515,7 +168555,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07321">
+            <rdf:Description rdf:about="#R_MAR07321">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.2.1.113"/>
@@ -168528,15 +168568,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00143g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00143g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00142g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02453g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00142g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02453g" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07322" sboTerm="SBO:0000176" id="MAR07322" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07322" sboTerm="SBO:0000176" id="R_MAR07322" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -168544,7 +168584,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07322">
+            <rdf:Description rdf:about="#R_MAR07322">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.2.1.113"/>
@@ -168557,15 +168597,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00144g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00144g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00142g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02453g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00142g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02453g" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07323" sboTerm="SBO:0000176" id="MAR07323" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07323" sboTerm="SBO:0000176" id="R_MAR07323" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -168573,7 +168613,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07323">
+            <rdf:Description rdf:about="#R_MAR07323">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.101"/>
@@ -168586,19 +168626,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00142g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03111g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00142g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03111g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02598g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02598g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106g" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Mgat1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07324" sboTerm="SBO:0000176" id="MAR07324" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07324" sboTerm="SBO:0000176" id="R_MAR07324" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -168606,7 +168646,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07324">
+            <rdf:Description rdf:about="#R_MAR07324">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.2.1.114"/>
@@ -168619,15 +168659,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040g" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02598g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040g" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02598g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02453g" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02597g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02453g" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02597g" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07325" sboTerm="SBO:0000176" id="MAR07325" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07325" sboTerm="SBO:0000176" id="R_MAR07325" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -168635,7 +168675,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07325">
+            <rdf:Description rdf:about="#R_MAR07325">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.143"/>
@@ -168648,19 +168688,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02597g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03111g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02597g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03111g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02507g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02507g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106g" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Mgat2"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07326" sboTerm="SBO:0000176" id="MAR07326" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07326" sboTerm="SBO:0000176" id="R_MAR07326" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -168668,7 +168708,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07326">
+            <rdf:Description rdf:about="#R_MAR07326">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.144"/>
@@ -168683,19 +168723,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02507g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03111g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02507g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03111g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02510g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02510g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106g" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Mgat3"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07327" sboTerm="SBO:0000176" id="MAR07327" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07327" sboTerm="SBO:0000176" id="R_MAR07327" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -168703,7 +168743,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07327">
+            <rdf:Description rdf:about="#R_MAR07327">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.145"/>
@@ -168715,19 +168755,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02507g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03111g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02507g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03111g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01868g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01868g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106g" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Mgat4a"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07332" sboTerm="SBO:0000176" id="MAR07332" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07332" sboTerm="SBO:0000176" id="R_MAR07332" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -168735,7 +168775,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07332">
+            <rdf:Description rdf:about="#R_MAR07332">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.68"/>
@@ -168748,19 +168788,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01950g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02507g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01950g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02507g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01829g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01948g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01829g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01948g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039g" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="FucT6"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07333" sboTerm="SBO:0000176" id="MAR07333" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07333" sboTerm="SBO:0000176" id="R_MAR07333" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -168768,7 +168808,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07333">
+            <rdf:Description rdf:about="#R_MAR07333">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.38"/>
@@ -168781,16 +168821,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01829g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03107g" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01829g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03107g" stoichiometry="2" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039g" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02323g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106g" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02039g" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02323g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106g" stoichiometry="2" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07334" sboTerm="SBO:0000176" id="MAR07334" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07334" sboTerm="SBO:0000176" id="R_MAR07334" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -168798,7 +168838,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07334">
+            <rdf:Description rdf:about="#R_MAR07334">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.99.1"/>
@@ -168811,19 +168851,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01592g" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02323g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01592g" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02323g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01590g" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02039g" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02672g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01590g" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02039g" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02672g" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="SiaT"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07428" sboTerm="SBO:0000176" id="MAR07428" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07428" sboTerm="SBO:0000176" id="R_MAR07428" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -168831,7 +168871,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07428">
+            <rdf:Description rdf:about="#R_MAR07428">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.2.1.24"/>
@@ -168844,18 +168884,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00141l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040l" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM00141l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="2" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01382l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02453l" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01382l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02453l" stoichiometry="2" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="LManII"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07429" sboTerm="SBO:0000176" id="MAR07429" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07429" sboTerm="SBO:0000176" id="R_MAR07429" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -168863,7 +168903,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07429">
+            <rdf:Description rdf:about="#R_MAR07429">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.2.1.25"/>
@@ -168876,15 +168916,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01382l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01382l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02453l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02527l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02453l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02527l" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07574" sboTerm="SBO:0000176" id="MAR07574" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07574" sboTerm="SBO:0000176" id="R_MAR07574" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -168892,7 +168932,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07574">
+            <rdf:Description rdf:about="#R_MAR07574">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.5.1.26"/>
@@ -168905,18 +168945,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01652l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01652l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00198l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01651l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00198l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01651l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG1827"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07575" sboTerm="SBO:0000176" id="MAR07575" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07575" sboTerm="SBO:0000176" id="R_MAR07575" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -168924,7 +168964,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07575">
+            <rdf:Description rdf:about="#R_MAR07575">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.2.1.96"/>
@@ -168937,18 +168977,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01651l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01651l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01653l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02527l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01653l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02527l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG5613"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07576" sboTerm="SBO:0000176" id="MAR07576" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07576" sboTerm="SBO:0000176" id="R_MAR07576" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -168956,7 +168996,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07576">
+            <rdf:Description rdf:about="#R_MAR07576">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.4.16.5"/>
@@ -168971,18 +169011,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01653l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040l" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01653l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="2" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02324l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02543l" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02324l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02543l" stoichiometry="2" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Ect3"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07577" sboTerm="SBO:0000176" id="MAR07577" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07577" sboTerm="SBO:0000176" id="R_MAR07577" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -168990,7 +169030,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07577">
+            <rdf:Description rdf:about="#R_MAR07577">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.6.4"/>
@@ -169006,18 +169046,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040l" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02324l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02324l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01910l" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02508l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01910l" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02508l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Ect3"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07578" sboTerm="SBO:0000176" id="MAR07578" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07578" sboTerm="SBO:0000176" id="R_MAR07578" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -169025,7 +169065,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07578">
+            <rdf:Description rdf:about="#R_MAR07578">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.2.1.52"/>
@@ -169038,12 +169078,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040l" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02508l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02508l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00141l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02527l" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM00141l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02527l" stoichiometry="2" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -169054,7 +169094,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07580" sboTerm="SBO:0000176" id="MAR07580" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07580" sboTerm="SBO:0000176" id="R_MAR07580" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -169062,7 +169102,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07580">
+            <rdf:Description rdf:about="#R_MAR07580">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.2.1.51"/>
@@ -169075,18 +169115,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02672e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02672e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01159e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01652e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01159e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01652e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Fuca"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07582" sboTerm="SBO:0000176" id="MAR07582" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07582" sboTerm="SBO:0000176" id="R_MAR07582" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -169094,7 +169134,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07582">
+            <rdf:Description rdf:about="#R_MAR07582">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.2.1.51"/>
@@ -169107,18 +169147,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02672l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02672l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01159l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01652l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01159l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01652l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Fuca"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07585" sboTerm="SBO:0000176" id="MAR07585" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07585" sboTerm="SBO:0000176" id="R_MAR07585" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -169126,7 +169166,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07585">
+            <rdf:Description rdf:about="#R_MAR07585">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.5.1.26"/>
@@ -169139,18 +169179,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02510l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02510l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00198l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02509l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00198l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02509l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG1827"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07586" sboTerm="SBO:0000176" id="MAR07586" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07586" sboTerm="SBO:0000176" id="R_MAR07586" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -169158,7 +169198,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07586">
+            <rdf:Description rdf:about="#R_MAR07586">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ENGASE2ly"/>
@@ -169170,18 +169210,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02509l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02509l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02511l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02527l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02511l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02527l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG5613"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07587" sboTerm="SBO:0000176" id="MAR07587" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07587" sboTerm="SBO:0000176" id="R_MAR07587" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -169189,7 +169229,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07587">
+            <rdf:Description rdf:about="#R_MAR07587">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.2.1.52"/>
@@ -169202,12 +169242,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040l" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM02511l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM02511l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00141l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02527l" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM00141l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02527l" stoichiometry="3" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -169218,7 +169258,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08692" sboTerm="SBO:0000176" id="MAR08692" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08692" sboTerm="SBO:0000176" id="R_MAR08692" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -169226,7 +169266,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08692">
+            <rdf:Description rdf:about="#R_MAR08692">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/DOLICHOL_Lter"/>
@@ -169239,16 +169279,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01731r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01731r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01733r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01965r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01733r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01965r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08693" sboTerm="SBO:0000176" id="MAR08693" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08693" sboTerm="SBO:0000176" id="R_MAR08693" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -169256,7 +169296,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08693">
+            <rdf:Description rdf:about="#R_MAR08693">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.145"/>
@@ -169269,19 +169309,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02507g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03111g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02507g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03111g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02512g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02512g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106g" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Mgat4a"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08695" sboTerm="SBO:0000176" id="MAR08695" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08695" sboTerm="SBO:0000176" id="R_MAR08695" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -169289,7 +169329,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08695">
+            <rdf:Description rdf:about="#R_MAR08695">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/M16N4Tg"/>
@@ -169301,16 +169341,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02515g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03111g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02515g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03111g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02516g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02516g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106g" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05152" sboTerm="SBO:0000176" id="MAR05152" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05152" sboTerm="SBO:0000176" id="R_MAR05152" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 2</p>
@@ -169318,7 +169358,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05152">
+            <rdf:Description rdf:about="#R_MAR05152">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_5152"/>
@@ -169329,60 +169369,60 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1269" constant="true"/>
-          <speciesReference species="MAM02006c" stoichiometry="16" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1270" constant="true"/>
-          <speciesReference species="MAM02335c" stoichiometry="34" constant="true"/>
-          <speciesReference species="MAM02340c" stoichiometry="16" constant="true"/>
-          <speciesReference species="MAM02341c" stoichiometry="19" constant="true"/>
-          <speciesReference species="MAM02342c" stoichiometry="25" constant="true"/>
-          <speciesReference species="MAM02351c" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM02376c" stoichiometry="17" constant="true"/>
-          <speciesReference species="MAM02377c" stoichiometry="29" constant="true"/>
-          <speciesReference species="MAM02380c" stoichiometry="9" constant="true"/>
-          <speciesReference species="MAM02401c" stoichiometry="20" constant="true"/>
-          <speciesReference species="MAM02404c" stoichiometry="59" constant="true"/>
-          <speciesReference species="MAM02405c" stoichiometry="26" constant="true"/>
-          <speciesReference species="MAM02408c" stoichiometry="14" constant="true"/>
-          <speciesReference species="MAM02412c" stoichiometry="25" constant="true"/>
-          <speciesReference species="MAM02415c" stoichiometry="16" constant="true"/>
-          <speciesReference species="MAM02416c" stoichiometry="30" constant="true"/>
-          <speciesReference species="MAM02419c" stoichiometry="29" constant="true"/>
-          <speciesReference species="MAM02420c" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM02421c" stoichiometry="9" constant="true"/>
-          <speciesReference species="MAM02423c" stoichiometry="24" constant="true"/>
-        </listOfReactants>
-        <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1269" constant="true"/>
-          <speciesReference species="MAM01343c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1680" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1269" constant="true"/>
-          <speciesReference species="MAM03063c" stoichiometry="34" constant="true"/>
-          <speciesReference species="MAM03064c" stoichiometry="16" constant="true"/>
-          <speciesReference species="MAM03065c" stoichiometry="19" constant="true"/>
-          <speciesReference species="MAM03066c" stoichiometry="25" constant="true"/>
-          <speciesReference species="MAM03067c" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM03068c" stoichiometry="17" constant="true"/>
-          <speciesReference species="MAM03069c" stoichiometry="29" constant="true"/>
-          <speciesReference species="MAM03070c" stoichiometry="16" constant="true"/>
-          <speciesReference species="MAM03071c" stoichiometry="9" constant="true"/>
-          <speciesReference species="MAM03072c" stoichiometry="20" constant="true"/>
-          <speciesReference species="MAM03073c" stoichiometry="59" constant="true"/>
-          <speciesReference species="MAM03074c" stoichiometry="26" constant="true"/>
-          <speciesReference species="MAM03075c" stoichiometry="14" constant="true"/>
-          <speciesReference species="MAM03076c" stoichiometry="25" constant="true"/>
-          <speciesReference species="MAM03077c" stoichiometry="16" constant="true"/>
-          <speciesReference species="MAM03078c" stoichiometry="30" constant="true"/>
-          <speciesReference species="MAM03079c" stoichiometry="29" constant="true"/>
-          <speciesReference species="MAM03080c" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM03081c" stoichiometry="9" constant="true"/>
-          <speciesReference species="MAM03082c" stoichiometry="24" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1269" constant="true"/>
+          <speciesReference species="M_MAM02006c" stoichiometry="16" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1270" constant="true"/>
+          <speciesReference species="M_MAM02335c" stoichiometry="34" constant="true"/>
+          <speciesReference species="M_MAM02340c" stoichiometry="16" constant="true"/>
+          <speciesReference species="M_MAM02341c" stoichiometry="19" constant="true"/>
+          <speciesReference species="M_MAM02342c" stoichiometry="25" constant="true"/>
+          <speciesReference species="M_MAM02351c" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM02376c" stoichiometry="17" constant="true"/>
+          <speciesReference species="M_MAM02377c" stoichiometry="29" constant="true"/>
+          <speciesReference species="M_MAM02380c" stoichiometry="9" constant="true"/>
+          <speciesReference species="M_MAM02401c" stoichiometry="20" constant="true"/>
+          <speciesReference species="M_MAM02404c" stoichiometry="59" constant="true"/>
+          <speciesReference species="M_MAM02405c" stoichiometry="26" constant="true"/>
+          <speciesReference species="M_MAM02408c" stoichiometry="14" constant="true"/>
+          <speciesReference species="M_MAM02412c" stoichiometry="25" constant="true"/>
+          <speciesReference species="M_MAM02415c" stoichiometry="16" constant="true"/>
+          <speciesReference species="M_MAM02416c" stoichiometry="30" constant="true"/>
+          <speciesReference species="M_MAM02419c" stoichiometry="29" constant="true"/>
+          <speciesReference species="M_MAM02420c" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM02421c" stoichiometry="9" constant="true"/>
+          <speciesReference species="M_MAM02423c" stoichiometry="24" constant="true"/>
+        </listOfReactants>
+        <listOfProducts>
+          <speciesReference species="M_MAM01285c" stoichiometry="1269" constant="true"/>
+          <speciesReference species="M_MAM01343c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1680" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1269" constant="true"/>
+          <speciesReference species="M_MAM03063c" stoichiometry="34" constant="true"/>
+          <speciesReference species="M_MAM03064c" stoichiometry="16" constant="true"/>
+          <speciesReference species="M_MAM03065c" stoichiometry="19" constant="true"/>
+          <speciesReference species="M_MAM03066c" stoichiometry="25" constant="true"/>
+          <speciesReference species="M_MAM03067c" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM03068c" stoichiometry="17" constant="true"/>
+          <speciesReference species="M_MAM03069c" stoichiometry="29" constant="true"/>
+          <speciesReference species="M_MAM03070c" stoichiometry="16" constant="true"/>
+          <speciesReference species="M_MAM03071c" stoichiometry="9" constant="true"/>
+          <speciesReference species="M_MAM03072c" stoichiometry="20" constant="true"/>
+          <speciesReference species="M_MAM03073c" stoichiometry="59" constant="true"/>
+          <speciesReference species="M_MAM03074c" stoichiometry="26" constant="true"/>
+          <speciesReference species="M_MAM03075c" stoichiometry="14" constant="true"/>
+          <speciesReference species="M_MAM03076c" stoichiometry="25" constant="true"/>
+          <speciesReference species="M_MAM03077c" stoichiometry="16" constant="true"/>
+          <speciesReference species="M_MAM03078c" stoichiometry="30" constant="true"/>
+          <speciesReference species="M_MAM03079c" stoichiometry="29" constant="true"/>
+          <speciesReference species="M_MAM03080c" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM03081c" stoichiometry="9" constant="true"/>
+          <speciesReference species="M_MAM03082c" stoichiometry="24" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Spn28Dc"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05153" sboTerm="SBO:0000176" id="MAR05153" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05153" sboTerm="SBO:0000176" id="R_MAR05153" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 2</p>
@@ -169390,7 +169430,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05153">
+            <rdf:Description rdf:about="#R_MAR05153">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_5153"/>
@@ -169401,60 +169441,60 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1254" constant="true"/>
-          <speciesReference species="MAM02006c" stoichiometry="24" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1255" constant="true"/>
-          <speciesReference species="MAM02335c" stoichiometry="26" constant="true"/>
-          <speciesReference species="MAM02340c" stoichiometry="7" constant="true"/>
-          <speciesReference species="MAM02341c" stoichiometry="19" constant="true"/>
-          <speciesReference species="MAM02342c" stoichiometry="24" constant="true"/>
-          <speciesReference species="MAM02351c" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM02376c" stoichiometry="18" constant="true"/>
-          <speciesReference species="MAM02377c" stoichiometry="32" constant="true"/>
-          <speciesReference species="MAM02380c" stoichiometry="13" constant="true"/>
-          <speciesReference species="MAM02401c" stoichiometry="20" constant="true"/>
-          <speciesReference species="MAM02404c" stoichiometry="51" constant="true"/>
-          <speciesReference species="MAM02405c" stoichiometry="34" constant="true"/>
-          <speciesReference species="MAM02408c" stoichiometry="10" constant="true"/>
-          <speciesReference species="MAM02412c" stoichiometry="27" constant="true"/>
-          <speciesReference species="MAM02415c" stoichiometry="19" constant="true"/>
-          <speciesReference species="MAM02416c" stoichiometry="25" constant="true"/>
-          <speciesReference species="MAM02419c" stoichiometry="30" constant="true"/>
-          <speciesReference species="MAM02420c" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM02421c" stoichiometry="6" constant="true"/>
-          <speciesReference species="MAM02423c" stoichiometry="27" constant="true"/>
-        </listOfReactants>
-        <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1254" constant="true"/>
-          <speciesReference species="MAM01345c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1657" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1254" constant="true"/>
-          <speciesReference species="MAM03063c" stoichiometry="26" constant="true"/>
-          <speciesReference species="MAM03064c" stoichiometry="7" constant="true"/>
-          <speciesReference species="MAM03065c" stoichiometry="19" constant="true"/>
-          <speciesReference species="MAM03066c" stoichiometry="24" constant="true"/>
-          <speciesReference species="MAM03067c" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM03068c" stoichiometry="18" constant="true"/>
-          <speciesReference species="MAM03069c" stoichiometry="32" constant="true"/>
-          <speciesReference species="MAM03070c" stoichiometry="24" constant="true"/>
-          <speciesReference species="MAM03071c" stoichiometry="13" constant="true"/>
-          <speciesReference species="MAM03072c" stoichiometry="20" constant="true"/>
-          <speciesReference species="MAM03073c" stoichiometry="51" constant="true"/>
-          <speciesReference species="MAM03074c" stoichiometry="34" constant="true"/>
-          <speciesReference species="MAM03075c" stoichiometry="10" constant="true"/>
-          <speciesReference species="MAM03076c" stoichiometry="27" constant="true"/>
-          <speciesReference species="MAM03077c" stoichiometry="19" constant="true"/>
-          <speciesReference species="MAM03078c" stoichiometry="25" constant="true"/>
-          <speciesReference species="MAM03079c" stoichiometry="30" constant="true"/>
-          <speciesReference species="MAM03080c" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM03081c" stoichiometry="6" constant="true"/>
-          <speciesReference species="MAM03082c" stoichiometry="27" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1254" constant="true"/>
+          <speciesReference species="M_MAM02006c" stoichiometry="24" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1255" constant="true"/>
+          <speciesReference species="M_MAM02335c" stoichiometry="26" constant="true"/>
+          <speciesReference species="M_MAM02340c" stoichiometry="7" constant="true"/>
+          <speciesReference species="M_MAM02341c" stoichiometry="19" constant="true"/>
+          <speciesReference species="M_MAM02342c" stoichiometry="24" constant="true"/>
+          <speciesReference species="M_MAM02351c" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM02376c" stoichiometry="18" constant="true"/>
+          <speciesReference species="M_MAM02377c" stoichiometry="32" constant="true"/>
+          <speciesReference species="M_MAM02380c" stoichiometry="13" constant="true"/>
+          <speciesReference species="M_MAM02401c" stoichiometry="20" constant="true"/>
+          <speciesReference species="M_MAM02404c" stoichiometry="51" constant="true"/>
+          <speciesReference species="M_MAM02405c" stoichiometry="34" constant="true"/>
+          <speciesReference species="M_MAM02408c" stoichiometry="10" constant="true"/>
+          <speciesReference species="M_MAM02412c" stoichiometry="27" constant="true"/>
+          <speciesReference species="M_MAM02415c" stoichiometry="19" constant="true"/>
+          <speciesReference species="M_MAM02416c" stoichiometry="25" constant="true"/>
+          <speciesReference species="M_MAM02419c" stoichiometry="30" constant="true"/>
+          <speciesReference species="M_MAM02420c" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM02421c" stoichiometry="6" constant="true"/>
+          <speciesReference species="M_MAM02423c" stoichiometry="27" constant="true"/>
+        </listOfReactants>
+        <listOfProducts>
+          <speciesReference species="M_MAM01285c" stoichiometry="1254" constant="true"/>
+          <speciesReference species="M_MAM01345c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1657" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1254" constant="true"/>
+          <speciesReference species="M_MAM03063c" stoichiometry="26" constant="true"/>
+          <speciesReference species="M_MAM03064c" stoichiometry="7" constant="true"/>
+          <speciesReference species="M_MAM03065c" stoichiometry="19" constant="true"/>
+          <speciesReference species="M_MAM03066c" stoichiometry="24" constant="true"/>
+          <speciesReference species="M_MAM03067c" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM03068c" stoichiometry="18" constant="true"/>
+          <speciesReference species="M_MAM03069c" stoichiometry="32" constant="true"/>
+          <speciesReference species="M_MAM03070c" stoichiometry="24" constant="true"/>
+          <speciesReference species="M_MAM03071c" stoichiometry="13" constant="true"/>
+          <speciesReference species="M_MAM03072c" stoichiometry="20" constant="true"/>
+          <speciesReference species="M_MAM03073c" stoichiometry="51" constant="true"/>
+          <speciesReference species="M_MAM03074c" stoichiometry="34" constant="true"/>
+          <speciesReference species="M_MAM03075c" stoichiometry="10" constant="true"/>
+          <speciesReference species="M_MAM03076c" stoichiometry="27" constant="true"/>
+          <speciesReference species="M_MAM03077c" stoichiometry="19" constant="true"/>
+          <speciesReference species="M_MAM03078c" stoichiometry="25" constant="true"/>
+          <speciesReference species="M_MAM03079c" stoichiometry="30" constant="true"/>
+          <speciesReference species="M_MAM03080c" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM03081c" stoichiometry="6" constant="true"/>
+          <speciesReference species="M_MAM03082c" stoichiometry="27" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Spn28Dc"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05154" sboTerm="SBO:0000176" id="MAR05154" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05154" sboTerm="SBO:0000176" id="R_MAR05154" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 2</p>
@@ -169462,7 +169502,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05154">
+            <rdf:Description rdf:about="#R_MAR05154">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_5154"/>
@@ -169473,54 +169513,54 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="13683" constant="true"/>
-          <speciesReference species="MAM02006c" stoichiometry="207" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="13684" constant="true"/>
-          <speciesReference species="MAM02335c" stoichiometry="275" constant="true"/>
-          <speciesReference species="MAM02340c" stoichiometry="150" constant="true"/>
-          <speciesReference species="MAM02341c" stoichiometry="247" constant="true"/>
-          <speciesReference species="MAM02342c" stoichiometry="233" constant="true"/>
-          <speciesReference species="MAM02351c" stoichiometry="25" constant="true"/>
-          <speciesReference species="MAM02376c" stoichiometry="230" constant="true"/>
-          <speciesReference species="MAM02377c" stoichiometry="298" constant="true"/>
-          <speciesReference species="MAM02380c" stoichiometry="115" constant="true"/>
-          <speciesReference species="MAM02401c" stoichiometry="285" constant="true"/>
-          <speciesReference species="MAM02404c" stoichiometry="533" constant="true"/>
-          <speciesReference species="MAM02405c" stoichiometry="357" constant="true"/>
-          <speciesReference species="MAM02408c" stoichiometry="79" constant="true"/>
-          <speciesReference species="MAM02412c" stoichiometry="224" constant="true"/>
-          <speciesReference species="MAM02415c" stoichiometry="171" constant="true"/>
-          <speciesReference species="MAM02416c" stoichiometry="392" constant="true"/>
-          <speciesReference species="MAM02419c" stoichiometry="300" constant="true"/>
-          <speciesReference species="MAM02420c" stoichiometry="37" constant="true"/>
-          <speciesReference species="MAM02421c" stoichiometry="151" constant="true"/>
-          <speciesReference species="MAM02423c" stoichiometry="252" constant="true"/>
-        </listOfReactants>
-        <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="13683" constant="true"/>
-          <speciesReference species="MAM01351c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="18220" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="13683" constant="true"/>
-          <speciesReference species="MAM03063c" stoichiometry="275" constant="true"/>
-          <speciesReference species="MAM03064c" stoichiometry="150" constant="true"/>
-          <speciesReference species="MAM03065c" stoichiometry="247" constant="true"/>
-          <speciesReference species="MAM03066c" stoichiometry="233" constant="true"/>
-          <speciesReference species="MAM03067c" stoichiometry="25" constant="true"/>
-          <speciesReference species="MAM03068c" stoichiometry="230" constant="true"/>
-          <speciesReference species="MAM03069c" stoichiometry="298" constant="true"/>
-          <speciesReference species="MAM03070c" stoichiometry="207" constant="true"/>
-          <speciesReference species="MAM03071c" stoichiometry="115" constant="true"/>
-          <speciesReference species="MAM03072c" stoichiometry="285" constant="true"/>
-          <speciesReference species="MAM03073c" stoichiometry="533" constant="true"/>
-          <speciesReference species="MAM03074c" stoichiometry="357" constant="true"/>
-          <speciesReference species="MAM03075c" stoichiometry="79" constant="true"/>
-          <speciesReference species="MAM03076c" stoichiometry="224" constant="true"/>
-          <speciesReference species="MAM03077c" stoichiometry="171" constant="true"/>
-          <speciesReference species="MAM03078c" stoichiometry="392" constant="true"/>
-          <speciesReference species="MAM03079c" stoichiometry="300" constant="true"/>
-          <speciesReference species="MAM03080c" stoichiometry="37" constant="true"/>
-          <speciesReference species="MAM03081c" stoichiometry="151" constant="true"/>
-          <speciesReference species="MAM03082c" stoichiometry="252" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="13683" constant="true"/>
+          <speciesReference species="M_MAM02006c" stoichiometry="207" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="13684" constant="true"/>
+          <speciesReference species="M_MAM02335c" stoichiometry="275" constant="true"/>
+          <speciesReference species="M_MAM02340c" stoichiometry="150" constant="true"/>
+          <speciesReference species="M_MAM02341c" stoichiometry="247" constant="true"/>
+          <speciesReference species="M_MAM02342c" stoichiometry="233" constant="true"/>
+          <speciesReference species="M_MAM02351c" stoichiometry="25" constant="true"/>
+          <speciesReference species="M_MAM02376c" stoichiometry="230" constant="true"/>
+          <speciesReference species="M_MAM02377c" stoichiometry="298" constant="true"/>
+          <speciesReference species="M_MAM02380c" stoichiometry="115" constant="true"/>
+          <speciesReference species="M_MAM02401c" stoichiometry="285" constant="true"/>
+          <speciesReference species="M_MAM02404c" stoichiometry="533" constant="true"/>
+          <speciesReference species="M_MAM02405c" stoichiometry="357" constant="true"/>
+          <speciesReference species="M_MAM02408c" stoichiometry="79" constant="true"/>
+          <speciesReference species="M_MAM02412c" stoichiometry="224" constant="true"/>
+          <speciesReference species="M_MAM02415c" stoichiometry="171" constant="true"/>
+          <speciesReference species="M_MAM02416c" stoichiometry="392" constant="true"/>
+          <speciesReference species="M_MAM02419c" stoichiometry="300" constant="true"/>
+          <speciesReference species="M_MAM02420c" stoichiometry="37" constant="true"/>
+          <speciesReference species="M_MAM02421c" stoichiometry="151" constant="true"/>
+          <speciesReference species="M_MAM02423c" stoichiometry="252" constant="true"/>
+        </listOfReactants>
+        <listOfProducts>
+          <speciesReference species="M_MAM01285c" stoichiometry="13683" constant="true"/>
+          <speciesReference species="M_MAM01351c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="18220" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="13683" constant="true"/>
+          <speciesReference species="M_MAM03063c" stoichiometry="275" constant="true"/>
+          <speciesReference species="M_MAM03064c" stoichiometry="150" constant="true"/>
+          <speciesReference species="M_MAM03065c" stoichiometry="247" constant="true"/>
+          <speciesReference species="M_MAM03066c" stoichiometry="233" constant="true"/>
+          <speciesReference species="M_MAM03067c" stoichiometry="25" constant="true"/>
+          <speciesReference species="M_MAM03068c" stoichiometry="230" constant="true"/>
+          <speciesReference species="M_MAM03069c" stoichiometry="298" constant="true"/>
+          <speciesReference species="M_MAM03070c" stoichiometry="207" constant="true"/>
+          <speciesReference species="M_MAM03071c" stoichiometry="115" constant="true"/>
+          <speciesReference species="M_MAM03072c" stoichiometry="285" constant="true"/>
+          <speciesReference species="M_MAM03073c" stoichiometry="533" constant="true"/>
+          <speciesReference species="M_MAM03074c" stoichiometry="357" constant="true"/>
+          <speciesReference species="M_MAM03075c" stoichiometry="79" constant="true"/>
+          <speciesReference species="M_MAM03076c" stoichiometry="224" constant="true"/>
+          <speciesReference species="M_MAM03077c" stoichiometry="171" constant="true"/>
+          <speciesReference species="M_MAM03078c" stoichiometry="392" constant="true"/>
+          <speciesReference species="M_MAM03079c" stoichiometry="300" constant="true"/>
+          <speciesReference species="M_MAM03080c" stoichiometry="37" constant="true"/>
+          <speciesReference species="M_MAM03081c" stoichiometry="151" constant="true"/>
+          <speciesReference species="M_MAM03082c" stoichiometry="252" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -169529,7 +169569,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05155" sboTerm="SBO:0000176" id="MAR05155" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05155" sboTerm="SBO:0000176" id="R_MAR05155" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -169537,7 +169577,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05155">
+            <rdf:Description rdf:about="#R_MAR05155">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_5155"/>
@@ -169548,55 +169588,55 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="372" constant="true"/>
-          <speciesReference species="MAM02006c" stoichiometry="6" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="373" constant="true"/>
-          <speciesReference species="MAM02335c" stoichiometry="11" constant="true"/>
-          <speciesReference species="MAM02340c" stoichiometry="9" constant="true"/>
-          <speciesReference species="MAM02341c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02342c" stoichiometry="8" constant="true"/>
-          <speciesReference species="MAM02351c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02376c" stoichiometry="7" constant="true"/>
-          <speciesReference species="MAM02377c" stoichiometry="5" constant="true"/>
-          <speciesReference species="MAM02380c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02401c" stoichiometry="4" constant="true"/>
-          <speciesReference species="MAM02404c" stoichiometry="20" constant="true"/>
-          <speciesReference species="MAM02405c" stoichiometry="4" constant="true"/>
-          <speciesReference species="MAM02408c" stoichiometry="5" constant="true"/>
-          <speciesReference species="MAM02412c" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM02415c" stoichiometry="9" constant="true"/>
-          <speciesReference species="MAM02416c" stoichiometry="8" constant="true"/>
-          <speciesReference species="MAM02419c" stoichiometry="6" constant="true"/>
-          <speciesReference species="MAM02421c" stoichiometry="4" constant="true"/>
-          <speciesReference species="MAM02423c" stoichiometry="11" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="372" constant="true"/>
+          <speciesReference species="M_MAM02006c" stoichiometry="6" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="373" constant="true"/>
+          <speciesReference species="M_MAM02335c" stoichiometry="11" constant="true"/>
+          <speciesReference species="M_MAM02340c" stoichiometry="9" constant="true"/>
+          <speciesReference species="M_MAM02341c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02342c" stoichiometry="8" constant="true"/>
+          <speciesReference species="M_MAM02351c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02376c" stoichiometry="7" constant="true"/>
+          <speciesReference species="M_MAM02377c" stoichiometry="5" constant="true"/>
+          <speciesReference species="M_MAM02380c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02401c" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM02404c" stoichiometry="20" constant="true"/>
+          <speciesReference species="M_MAM02405c" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM02408c" stoichiometry="5" constant="true"/>
+          <speciesReference species="M_MAM02412c" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM02415c" stoichiometry="9" constant="true"/>
+          <speciesReference species="M_MAM02416c" stoichiometry="8" constant="true"/>
+          <speciesReference species="M_MAM02419c" stoichiometry="6" constant="true"/>
+          <speciesReference species="M_MAM02421c" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM02423c" stoichiometry="11" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="372" constant="true"/>
-          <speciesReference species="MAM01349c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="496" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="372" constant="true"/>
-          <speciesReference species="MAM03063c" stoichiometry="11" constant="true"/>
-          <speciesReference species="MAM03064c" stoichiometry="9" constant="true"/>
-          <speciesReference species="MAM03065c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03066c" stoichiometry="8" constant="true"/>
-          <speciesReference species="MAM03067c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03068c" stoichiometry="7" constant="true"/>
-          <speciesReference species="MAM03069c" stoichiometry="5" constant="true"/>
-          <speciesReference species="MAM03070c" stoichiometry="6" constant="true"/>
-          <speciesReference species="MAM03071c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03072c" stoichiometry="4" constant="true"/>
-          <speciesReference species="MAM03073c" stoichiometry="20" constant="true"/>
-          <speciesReference species="MAM03074c" stoichiometry="4" constant="true"/>
-          <speciesReference species="MAM03075c" stoichiometry="5" constant="true"/>
-          <speciesReference species="MAM03076c" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM03077c" stoichiometry="9" constant="true"/>
-          <speciesReference species="MAM03078c" stoichiometry="8" constant="true"/>
-          <speciesReference species="MAM03079c" stoichiometry="6" constant="true"/>
-          <speciesReference species="MAM03081c" stoichiometry="4" constant="true"/>
-          <speciesReference species="MAM03082c" stoichiometry="11" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="372" constant="true"/>
+          <speciesReference species="M_MAM01349c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="496" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="372" constant="true"/>
+          <speciesReference species="M_MAM03063c" stoichiometry="11" constant="true"/>
+          <speciesReference species="M_MAM03064c" stoichiometry="9" constant="true"/>
+          <speciesReference species="M_MAM03065c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03066c" stoichiometry="8" constant="true"/>
+          <speciesReference species="M_MAM03067c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03068c" stoichiometry="7" constant="true"/>
+          <speciesReference species="M_MAM03069c" stoichiometry="5" constant="true"/>
+          <speciesReference species="M_MAM03070c" stoichiometry="6" constant="true"/>
+          <speciesReference species="M_MAM03071c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03072c" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM03073c" stoichiometry="20" constant="true"/>
+          <speciesReference species="M_MAM03074c" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM03075c" stoichiometry="5" constant="true"/>
+          <speciesReference species="M_MAM03076c" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM03077c" stoichiometry="9" constant="true"/>
+          <speciesReference species="M_MAM03078c" stoichiometry="8" constant="true"/>
+          <speciesReference species="M_MAM03079c" stoichiometry="6" constant="true"/>
+          <speciesReference species="M_MAM03081c" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM03082c" stoichiometry="11" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05156" sboTerm="SBO:0000176" id="MAR05156" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05156" sboTerm="SBO:0000176" id="R_MAR05156" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -169604,7 +169644,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05156">
+            <rdf:Description rdf:about="#R_MAR05156">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_5156"/>
@@ -169615,55 +169655,55 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="261" constant="true"/>
-          <speciesReference species="MAM02006c" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="262" constant="true"/>
-          <speciesReference species="MAM02335c" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM02340c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02341c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02342c" stoichiometry="13" constant="true"/>
-          <speciesReference species="MAM02351c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02376c" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM02377c" stoichiometry="9" constant="true"/>
-          <speciesReference species="MAM02380c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02401c" stoichiometry="8" constant="true"/>
-          <speciesReference species="MAM02404c" stoichiometry="10" constant="true"/>
-          <speciesReference species="MAM02405c" stoichiometry="7" constant="true"/>
-          <speciesReference species="MAM02408c" stoichiometry="5" constant="true"/>
-          <speciesReference species="MAM02412c" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM02415c" stoichiometry="5" constant="true"/>
-          <speciesReference species="MAM02416c" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM02419c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02421c" stoichiometry="4" constant="true"/>
-          <speciesReference species="MAM02423c" stoichiometry="6" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="261" constant="true"/>
+          <speciesReference species="M_MAM02006c" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="262" constant="true"/>
+          <speciesReference species="M_MAM02335c" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM02340c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02341c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02342c" stoichiometry="13" constant="true"/>
+          <speciesReference species="M_MAM02351c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02376c" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM02377c" stoichiometry="9" constant="true"/>
+          <speciesReference species="M_MAM02380c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02401c" stoichiometry="8" constant="true"/>
+          <speciesReference species="M_MAM02404c" stoichiometry="10" constant="true"/>
+          <speciesReference species="M_MAM02405c" stoichiometry="7" constant="true"/>
+          <speciesReference species="M_MAM02408c" stoichiometry="5" constant="true"/>
+          <speciesReference species="M_MAM02412c" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM02415c" stoichiometry="5" constant="true"/>
+          <speciesReference species="M_MAM02416c" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM02419c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02421c" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM02423c" stoichiometry="6" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="261" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="334" constant="true"/>
-          <speciesReference species="MAM02485c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="261" constant="true"/>
-          <speciesReference species="MAM03063c" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM03064c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03065c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03066c" stoichiometry="13" constant="true"/>
-          <speciesReference species="MAM03067c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03068c" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM03069c" stoichiometry="9" constant="true"/>
-          <speciesReference species="MAM03070c" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM03071c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03072c" stoichiometry="8" constant="true"/>
-          <speciesReference species="MAM03073c" stoichiometry="10" constant="true"/>
-          <speciesReference species="MAM03074c" stoichiometry="7" constant="true"/>
-          <speciesReference species="MAM03075c" stoichiometry="5" constant="true"/>
-          <speciesReference species="MAM03076c" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM03077c" stoichiometry="5" constant="true"/>
-          <speciesReference species="MAM03078c" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM03079c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03081c" stoichiometry="4" constant="true"/>
-          <speciesReference species="MAM03082c" stoichiometry="6" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="261" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="334" constant="true"/>
+          <speciesReference species="M_MAM02485c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="261" constant="true"/>
+          <speciesReference species="M_MAM03063c" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM03064c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03065c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03066c" stoichiometry="13" constant="true"/>
+          <speciesReference species="M_MAM03067c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03068c" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM03069c" stoichiometry="9" constant="true"/>
+          <speciesReference species="M_MAM03070c" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM03071c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03072c" stoichiometry="8" constant="true"/>
+          <speciesReference species="M_MAM03073c" stoichiometry="10" constant="true"/>
+          <speciesReference species="M_MAM03074c" stoichiometry="7" constant="true"/>
+          <speciesReference species="M_MAM03075c" stoichiometry="5" constant="true"/>
+          <speciesReference species="M_MAM03076c" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM03077c" stoichiometry="5" constant="true"/>
+          <speciesReference species="M_MAM03078c" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM03079c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03081c" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM03082c" stoichiometry="6" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05161" sboTerm="SBO:0000176" id="MAR05161" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05161" sboTerm="SBO:0000176" id="R_MAR05161" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -169671,7 +169711,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05161">
+            <rdf:Description rdf:about="#R_MAR05161">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_5161"/>
@@ -169682,57 +169722,57 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1218" constant="true"/>
-          <speciesReference species="MAM02006c" stoichiometry="31" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1219" constant="true"/>
-          <speciesReference species="MAM02335c" stoichiometry="30" constant="true"/>
-          <speciesReference species="MAM02340c" stoichiometry="9" constant="true"/>
-          <speciesReference species="MAM02341c" stoichiometry="21" constant="true"/>
-          <speciesReference species="MAM02342c" stoichiometry="25" constant="true"/>
-          <speciesReference species="MAM02351c" stoichiometry="12" constant="true"/>
-          <speciesReference species="MAM02376c" stoichiometry="17" constant="true"/>
-          <speciesReference species="MAM02377c" stoichiometry="25" constant="true"/>
-          <speciesReference species="MAM02380c" stoichiometry="13" constant="true"/>
-          <speciesReference species="MAM02401c" stoichiometry="18" constant="true"/>
-          <speciesReference species="MAM02404c" stoichiometry="31" constant="true"/>
-          <speciesReference species="MAM02405c" stoichiometry="35" constant="true"/>
-          <speciesReference species="MAM02408c" stoichiometry="5" constant="true"/>
-          <speciesReference species="MAM02412c" stoichiometry="8" constant="true"/>
-          <speciesReference species="MAM02415c" stoichiometry="21" constant="true"/>
-          <speciesReference species="MAM02416c" stoichiometry="18" constant="true"/>
-          <speciesReference species="MAM02419c" stoichiometry="22" constant="true"/>
-          <speciesReference species="MAM02420c" stoichiometry="8" constant="true"/>
-          <speciesReference species="MAM02421c" stoichiometry="21" constant="true"/>
-          <speciesReference species="MAM02423c" stoichiometry="36" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1218" constant="true"/>
+          <speciesReference species="M_MAM02006c" stoichiometry="31" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1219" constant="true"/>
+          <speciesReference species="M_MAM02335c" stoichiometry="30" constant="true"/>
+          <speciesReference species="M_MAM02340c" stoichiometry="9" constant="true"/>
+          <speciesReference species="M_MAM02341c" stoichiometry="21" constant="true"/>
+          <speciesReference species="M_MAM02342c" stoichiometry="25" constant="true"/>
+          <speciesReference species="M_MAM02351c" stoichiometry="12" constant="true"/>
+          <speciesReference species="M_MAM02376c" stoichiometry="17" constant="true"/>
+          <speciesReference species="M_MAM02377c" stoichiometry="25" constant="true"/>
+          <speciesReference species="M_MAM02380c" stoichiometry="13" constant="true"/>
+          <speciesReference species="M_MAM02401c" stoichiometry="18" constant="true"/>
+          <speciesReference species="M_MAM02404c" stoichiometry="31" constant="true"/>
+          <speciesReference species="M_MAM02405c" stoichiometry="35" constant="true"/>
+          <speciesReference species="M_MAM02408c" stoichiometry="5" constant="true"/>
+          <speciesReference species="M_MAM02412c" stoichiometry="8" constant="true"/>
+          <speciesReference species="M_MAM02415c" stoichiometry="21" constant="true"/>
+          <speciesReference species="M_MAM02416c" stoichiometry="18" constant="true"/>
+          <speciesReference species="M_MAM02419c" stoichiometry="22" constant="true"/>
+          <speciesReference species="M_MAM02420c" stoichiometry="8" constant="true"/>
+          <speciesReference species="M_MAM02421c" stoichiometry="21" constant="true"/>
+          <speciesReference species="M_MAM02423c" stoichiometry="36" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1218" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1618" constant="true"/>
-          <speciesReference species="MAM02044c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1218" constant="true"/>
-          <speciesReference species="MAM03063c" stoichiometry="30" constant="true"/>
-          <speciesReference species="MAM03064c" stoichiometry="9" constant="true"/>
-          <speciesReference species="MAM03065c" stoichiometry="21" constant="true"/>
-          <speciesReference species="MAM03066c" stoichiometry="25" constant="true"/>
-          <speciesReference species="MAM03067c" stoichiometry="12" constant="true"/>
-          <speciesReference species="MAM03068c" stoichiometry="17" constant="true"/>
-          <speciesReference species="MAM03069c" stoichiometry="25" constant="true"/>
-          <speciesReference species="MAM03070c" stoichiometry="31" constant="true"/>
-          <speciesReference species="MAM03071c" stoichiometry="13" constant="true"/>
-          <speciesReference species="MAM03072c" stoichiometry="18" constant="true"/>
-          <speciesReference species="MAM03073c" stoichiometry="31" constant="true"/>
-          <speciesReference species="MAM03074c" stoichiometry="35" constant="true"/>
-          <speciesReference species="MAM03075c" stoichiometry="5" constant="true"/>
-          <speciesReference species="MAM03076c" stoichiometry="8" constant="true"/>
-          <speciesReference species="MAM03077c" stoichiometry="21" constant="true"/>
-          <speciesReference species="MAM03078c" stoichiometry="18" constant="true"/>
-          <speciesReference species="MAM03079c" stoichiometry="22" constant="true"/>
-          <speciesReference species="MAM03080c" stoichiometry="8" constant="true"/>
-          <speciesReference species="MAM03081c" stoichiometry="21" constant="true"/>
-          <speciesReference species="MAM03082c" stoichiometry="36" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1218" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1618" constant="true"/>
+          <speciesReference species="M_MAM02044c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1218" constant="true"/>
+          <speciesReference species="M_MAM03063c" stoichiometry="30" constant="true"/>
+          <speciesReference species="M_MAM03064c" stoichiometry="9" constant="true"/>
+          <speciesReference species="M_MAM03065c" stoichiometry="21" constant="true"/>
+          <speciesReference species="M_MAM03066c" stoichiometry="25" constant="true"/>
+          <speciesReference species="M_MAM03067c" stoichiometry="12" constant="true"/>
+          <speciesReference species="M_MAM03068c" stoichiometry="17" constant="true"/>
+          <speciesReference species="M_MAM03069c" stoichiometry="25" constant="true"/>
+          <speciesReference species="M_MAM03070c" stoichiometry="31" constant="true"/>
+          <speciesReference species="M_MAM03071c" stoichiometry="13" constant="true"/>
+          <speciesReference species="M_MAM03072c" stoichiometry="18" constant="true"/>
+          <speciesReference species="M_MAM03073c" stoichiometry="31" constant="true"/>
+          <speciesReference species="M_MAM03074c" stoichiometry="35" constant="true"/>
+          <speciesReference species="M_MAM03075c" stoichiometry="5" constant="true"/>
+          <speciesReference species="M_MAM03076c" stoichiometry="8" constant="true"/>
+          <speciesReference species="M_MAM03077c" stoichiometry="21" constant="true"/>
+          <speciesReference species="M_MAM03078c" stoichiometry="18" constant="true"/>
+          <speciesReference species="M_MAM03079c" stoichiometry="22" constant="true"/>
+          <speciesReference species="M_MAM03080c" stoichiometry="8" constant="true"/>
+          <speciesReference species="M_MAM03081c" stoichiometry="21" constant="true"/>
+          <speciesReference species="M_MAM03082c" stoichiometry="36" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05166" sboTerm="SBO:0000176" id="MAR05166" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05166" sboTerm="SBO:0000176" id="R_MAR05166" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -169740,7 +169780,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05166">
+            <rdf:Description rdf:about="#R_MAR05166">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.4.24.19"/>
@@ -169752,56 +169792,56 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="801" constant="true"/>
-          <speciesReference species="MAM02006c" stoichiometry="11" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="802" constant="true"/>
-          <speciesReference species="MAM02335c" stoichiometry="23" constant="true"/>
-          <speciesReference species="MAM02340c" stoichiometry="17" constant="true"/>
-          <speciesReference species="MAM02341c" stoichiometry="5" constant="true"/>
-          <speciesReference species="MAM02342c" stoichiometry="16" constant="true"/>
-          <speciesReference species="MAM02376c" stoichiometry="19" constant="true"/>
-          <speciesReference species="MAM02377c" stoichiometry="30" constant="true"/>
-          <speciesReference species="MAM02380c" stoichiometry="6" constant="true"/>
-          <speciesReference species="MAM02404c" stoichiometry="41" constant="true"/>
-          <speciesReference species="MAM02405c" stoichiometry="22" constant="true"/>
-          <speciesReference species="MAM02408c" stoichiometry="4" constant="true"/>
-          <speciesReference species="MAM02412c" stoichiometry="8" constant="true"/>
-          <speciesReference species="MAM02415c" stoichiometry="10" constant="true"/>
-          <speciesReference species="MAM02416c" stoichiometry="16" constant="true"/>
-          <speciesReference species="MAM02419c" stoichiometry="12" constant="true"/>
-          <speciesReference species="MAM02420c" stoichiometry="5" constant="true"/>
-          <speciesReference species="MAM02421c" stoichiometry="7" constant="true"/>
-          <speciesReference species="MAM02423c" stoichiometry="15" constant="true"/>
-        </listOfReactants>
-        <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="801" constant="true"/>
-          <speciesReference species="MAM01350c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1061" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="801" constant="true"/>
-          <speciesReference species="MAM03063c" stoichiometry="23" constant="true"/>
-          <speciesReference species="MAM03064c" stoichiometry="17" constant="true"/>
-          <speciesReference species="MAM03065c" stoichiometry="5" constant="true"/>
-          <speciesReference species="MAM03066c" stoichiometry="16" constant="true"/>
-          <speciesReference species="MAM03068c" stoichiometry="19" constant="true"/>
-          <speciesReference species="MAM03069c" stoichiometry="30" constant="true"/>
-          <speciesReference species="MAM03070c" stoichiometry="11" constant="true"/>
-          <speciesReference species="MAM03071c" stoichiometry="6" constant="true"/>
-          <speciesReference species="MAM03073c" stoichiometry="41" constant="true"/>
-          <speciesReference species="MAM03074c" stoichiometry="22" constant="true"/>
-          <speciesReference species="MAM03075c" stoichiometry="4" constant="true"/>
-          <speciesReference species="MAM03076c" stoichiometry="8" constant="true"/>
-          <speciesReference species="MAM03077c" stoichiometry="10" constant="true"/>
-          <speciesReference species="MAM03078c" stoichiometry="16" constant="true"/>
-          <speciesReference species="MAM03079c" stoichiometry="12" constant="true"/>
-          <speciesReference species="MAM03080c" stoichiometry="5" constant="true"/>
-          <speciesReference species="MAM03081c" stoichiometry="7" constant="true"/>
-          <speciesReference species="MAM03082c" stoichiometry="15" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="801" constant="true"/>
+          <speciesReference species="M_MAM02006c" stoichiometry="11" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="802" constant="true"/>
+          <speciesReference species="M_MAM02335c" stoichiometry="23" constant="true"/>
+          <speciesReference species="M_MAM02340c" stoichiometry="17" constant="true"/>
+          <speciesReference species="M_MAM02341c" stoichiometry="5" constant="true"/>
+          <speciesReference species="M_MAM02342c" stoichiometry="16" constant="true"/>
+          <speciesReference species="M_MAM02376c" stoichiometry="19" constant="true"/>
+          <speciesReference species="M_MAM02377c" stoichiometry="30" constant="true"/>
+          <speciesReference species="M_MAM02380c" stoichiometry="6" constant="true"/>
+          <speciesReference species="M_MAM02404c" stoichiometry="41" constant="true"/>
+          <speciesReference species="M_MAM02405c" stoichiometry="22" constant="true"/>
+          <speciesReference species="M_MAM02408c" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM02412c" stoichiometry="8" constant="true"/>
+          <speciesReference species="M_MAM02415c" stoichiometry="10" constant="true"/>
+          <speciesReference species="M_MAM02416c" stoichiometry="16" constant="true"/>
+          <speciesReference species="M_MAM02419c" stoichiometry="12" constant="true"/>
+          <speciesReference species="M_MAM02420c" stoichiometry="5" constant="true"/>
+          <speciesReference species="M_MAM02421c" stoichiometry="7" constant="true"/>
+          <speciesReference species="M_MAM02423c" stoichiometry="15" constant="true"/>
+        </listOfReactants>
+        <listOfProducts>
+          <speciesReference species="M_MAM01285c" stoichiometry="801" constant="true"/>
+          <speciesReference species="M_MAM01350c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1061" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="801" constant="true"/>
+          <speciesReference species="M_MAM03063c" stoichiometry="23" constant="true"/>
+          <speciesReference species="M_MAM03064c" stoichiometry="17" constant="true"/>
+          <speciesReference species="M_MAM03065c" stoichiometry="5" constant="true"/>
+          <speciesReference species="M_MAM03066c" stoichiometry="16" constant="true"/>
+          <speciesReference species="M_MAM03068c" stoichiometry="19" constant="true"/>
+          <speciesReference species="M_MAM03069c" stoichiometry="30" constant="true"/>
+          <speciesReference species="M_MAM03070c" stoichiometry="11" constant="true"/>
+          <speciesReference species="M_MAM03071c" stoichiometry="6" constant="true"/>
+          <speciesReference species="M_MAM03073c" stoichiometry="41" constant="true"/>
+          <speciesReference species="M_MAM03074c" stoichiometry="22" constant="true"/>
+          <speciesReference species="M_MAM03075c" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM03076c" stoichiometry="8" constant="true"/>
+          <speciesReference species="M_MAM03077c" stoichiometry="10" constant="true"/>
+          <speciesReference species="M_MAM03078c" stoichiometry="16" constant="true"/>
+          <speciesReference species="M_MAM03079c" stoichiometry="12" constant="true"/>
+          <speciesReference species="M_MAM03080c" stoichiometry="5" constant="true"/>
+          <speciesReference species="M_MAM03081c" stoichiometry="7" constant="true"/>
+          <speciesReference species="M_MAM03082c" stoichiometry="15" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="tok"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05167" sboTerm="SBO:0000176" id="MAR05167" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05167" sboTerm="SBO:0000176" id="R_MAR05167" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -169810,7 +169850,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05167">
+            <rdf:Description rdf:about="#R_MAR05167">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_5167"/>
@@ -169821,55 +169861,55 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="315" constant="true"/>
-          <speciesReference species="MAM02006c" stoichiometry="5" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="316" constant="true"/>
-          <speciesReference species="MAM02335c" stoichiometry="8" constant="true"/>
-          <speciesReference species="MAM02341c" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM02342c" stoichiometry="7" constant="true"/>
-          <speciesReference species="MAM02351c" stoichiometry="5" constant="true"/>
-          <speciesReference species="MAM02376c" stoichiometry="5" constant="true"/>
-          <speciesReference species="MAM02377c" stoichiometry="10" constant="true"/>
-          <speciesReference species="MAM02380c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02401c" stoichiometry="4" constant="true"/>
-          <speciesReference species="MAM02404c" stoichiometry="6" constant="true"/>
-          <speciesReference species="MAM02405c" stoichiometry="12" constant="true"/>
-          <speciesReference species="MAM02408c" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM02412c" stoichiometry="9" constant="true"/>
-          <speciesReference species="MAM02415c" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM02416c" stoichiometry="7" constant="true"/>
-          <speciesReference species="MAM02419c" stoichiometry="4" constant="true"/>
-          <speciesReference species="MAM02420c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02421c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02423c" stoichiometry="11" constant="true"/>
-        </listOfReactants>
-        <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="315" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="415" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="315" constant="true"/>
-          <speciesReference species="MAM02990c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03063c" stoichiometry="8" constant="true"/>
-          <speciesReference species="MAM03065c" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM03066c" stoichiometry="7" constant="true"/>
-          <speciesReference species="MAM03067c" stoichiometry="5" constant="true"/>
-          <speciesReference species="MAM03068c" stoichiometry="5" constant="true"/>
-          <speciesReference species="MAM03069c" stoichiometry="10" constant="true"/>
-          <speciesReference species="MAM03070c" stoichiometry="5" constant="true"/>
-          <speciesReference species="MAM03071c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03072c" stoichiometry="4" constant="true"/>
-          <speciesReference species="MAM03073c" stoichiometry="6" constant="true"/>
-          <speciesReference species="MAM03074c" stoichiometry="12" constant="true"/>
-          <speciesReference species="MAM03075c" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM03076c" stoichiometry="9" constant="true"/>
-          <speciesReference species="MAM03077c" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM03078c" stoichiometry="7" constant="true"/>
-          <speciesReference species="MAM03079c" stoichiometry="4" constant="true"/>
-          <speciesReference species="MAM03080c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03081c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03082c" stoichiometry="11" constant="true"/>
-        </listOfProducts>
-      </reaction>
-      <reaction metaid="MAR05168" sboTerm="SBO:0000176" id="MAR05168" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+          <speciesReference species="M_MAM01371c" stoichiometry="315" constant="true"/>
+          <speciesReference species="M_MAM02006c" stoichiometry="5" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="316" constant="true"/>
+          <speciesReference species="M_MAM02335c" stoichiometry="8" constant="true"/>
+          <speciesReference species="M_MAM02341c" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM02342c" stoichiometry="7" constant="true"/>
+          <speciesReference species="M_MAM02351c" stoichiometry="5" constant="true"/>
+          <speciesReference species="M_MAM02376c" stoichiometry="5" constant="true"/>
+          <speciesReference species="M_MAM02377c" stoichiometry="10" constant="true"/>
+          <speciesReference species="M_MAM02380c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02401c" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM02404c" stoichiometry="6" constant="true"/>
+          <speciesReference species="M_MAM02405c" stoichiometry="12" constant="true"/>
+          <speciesReference species="M_MAM02408c" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM02412c" stoichiometry="9" constant="true"/>
+          <speciesReference species="M_MAM02415c" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM02416c" stoichiometry="7" constant="true"/>
+          <speciesReference species="M_MAM02419c" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM02420c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02421c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02423c" stoichiometry="11" constant="true"/>
+        </listOfReactants>
+        <listOfProducts>
+          <speciesReference species="M_MAM01285c" stoichiometry="315" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="415" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="315" constant="true"/>
+          <speciesReference species="M_MAM02990c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03063c" stoichiometry="8" constant="true"/>
+          <speciesReference species="M_MAM03065c" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM03066c" stoichiometry="7" constant="true"/>
+          <speciesReference species="M_MAM03067c" stoichiometry="5" constant="true"/>
+          <speciesReference species="M_MAM03068c" stoichiometry="5" constant="true"/>
+          <speciesReference species="M_MAM03069c" stoichiometry="10" constant="true"/>
+          <speciesReference species="M_MAM03070c" stoichiometry="5" constant="true"/>
+          <speciesReference species="M_MAM03071c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03072c" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM03073c" stoichiometry="6" constant="true"/>
+          <speciesReference species="M_MAM03074c" stoichiometry="12" constant="true"/>
+          <speciesReference species="M_MAM03075c" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM03076c" stoichiometry="9" constant="true"/>
+          <speciesReference species="M_MAM03077c" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM03078c" stoichiometry="7" constant="true"/>
+          <speciesReference species="M_MAM03079c" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM03080c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03081c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03082c" stoichiometry="11" constant="true"/>
+        </listOfProducts>
+      </reaction>
+      <reaction metaid="R_MAR05168" sboTerm="SBO:0000176" id="R_MAR05168" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -169878,7 +169918,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05168">
+            <rdf:Description rdf:about="#R_MAR05168">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_5168"/>
@@ -169889,57 +169929,57 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="498" constant="true"/>
-          <speciesReference species="MAM02006c" stoichiometry="10" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="499" constant="true"/>
-          <speciesReference species="MAM02335c" stoichiometry="11" constant="true"/>
-          <speciesReference species="MAM02340c" stoichiometry="9" constant="true"/>
-          <speciesReference species="MAM02341c" stoichiometry="4" constant="true"/>
-          <speciesReference species="MAM02342c" stoichiometry="12" constant="true"/>
-          <speciesReference species="MAM02351c" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM02376c" stoichiometry="10" constant="true"/>
-          <speciesReference species="MAM02377c" stoichiometry="6" constant="true"/>
-          <speciesReference species="MAM02380c" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM02401c" stoichiometry="9" constant="true"/>
-          <speciesReference species="MAM02404c" stoichiometry="15" constant="true"/>
-          <speciesReference species="MAM02405c" stoichiometry="11" constant="true"/>
-          <speciesReference species="MAM02408c" stoichiometry="4" constant="true"/>
-          <speciesReference species="MAM02412c" stoichiometry="6" constant="true"/>
-          <speciesReference species="MAM02415c" stoichiometry="12" constant="true"/>
-          <speciesReference species="MAM02416c" stoichiometry="8" constant="true"/>
-          <speciesReference species="MAM02419c" stoichiometry="12" constant="true"/>
-          <speciesReference species="MAM02420c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02421c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02423c" stoichiometry="17" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="498" constant="true"/>
+          <speciesReference species="M_MAM02006c" stoichiometry="10" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="499" constant="true"/>
+          <speciesReference species="M_MAM02335c" stoichiometry="11" constant="true"/>
+          <speciesReference species="M_MAM02340c" stoichiometry="9" constant="true"/>
+          <speciesReference species="M_MAM02341c" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM02342c" stoichiometry="12" constant="true"/>
+          <speciesReference species="M_MAM02351c" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM02376c" stoichiometry="10" constant="true"/>
+          <speciesReference species="M_MAM02377c" stoichiometry="6" constant="true"/>
+          <speciesReference species="M_MAM02380c" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM02401c" stoichiometry="9" constant="true"/>
+          <speciesReference species="M_MAM02404c" stoichiometry="15" constant="true"/>
+          <speciesReference species="M_MAM02405c" stoichiometry="11" constant="true"/>
+          <speciesReference species="M_MAM02408c" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM02412c" stoichiometry="6" constant="true"/>
+          <speciesReference species="M_MAM02415c" stoichiometry="12" constant="true"/>
+          <speciesReference species="M_MAM02416c" stoichiometry="8" constant="true"/>
+          <speciesReference species="M_MAM02419c" stoichiometry="12" constant="true"/>
+          <speciesReference species="M_MAM02420c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02421c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02423c" stoichiometry="17" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="498" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="666" constant="true"/>
-          <speciesReference species="MAM02487c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="498" constant="true"/>
-          <speciesReference species="MAM03063c" stoichiometry="11" constant="true"/>
-          <speciesReference species="MAM03064c" stoichiometry="9" constant="true"/>
-          <speciesReference species="MAM03065c" stoichiometry="4" constant="true"/>
-          <speciesReference species="MAM03066c" stoichiometry="12" constant="true"/>
-          <speciesReference species="MAM03067c" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM03068c" stoichiometry="10" constant="true"/>
-          <speciesReference species="MAM03069c" stoichiometry="6" constant="true"/>
-          <speciesReference species="MAM03070c" stoichiometry="10" constant="true"/>
-          <speciesReference species="MAM03071c" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM03072c" stoichiometry="9" constant="true"/>
-          <speciesReference species="MAM03073c" stoichiometry="15" constant="true"/>
-          <speciesReference species="MAM03074c" stoichiometry="11" constant="true"/>
-          <speciesReference species="MAM03075c" stoichiometry="4" constant="true"/>
-          <speciesReference species="MAM03076c" stoichiometry="6" constant="true"/>
-          <speciesReference species="MAM03077c" stoichiometry="12" constant="true"/>
-          <speciesReference species="MAM03078c" stoichiometry="8" constant="true"/>
-          <speciesReference species="MAM03079c" stoichiometry="12" constant="true"/>
-          <speciesReference species="MAM03080c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03081c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03082c" stoichiometry="17" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="498" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="666" constant="true"/>
+          <speciesReference species="M_MAM02487c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="498" constant="true"/>
+          <speciesReference species="M_MAM03063c" stoichiometry="11" constant="true"/>
+          <speciesReference species="M_MAM03064c" stoichiometry="9" constant="true"/>
+          <speciesReference species="M_MAM03065c" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM03066c" stoichiometry="12" constant="true"/>
+          <speciesReference species="M_MAM03067c" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM03068c" stoichiometry="10" constant="true"/>
+          <speciesReference species="M_MAM03069c" stoichiometry="6" constant="true"/>
+          <speciesReference species="M_MAM03070c" stoichiometry="10" constant="true"/>
+          <speciesReference species="M_MAM03071c" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM03072c" stoichiometry="9" constant="true"/>
+          <speciesReference species="M_MAM03073c" stoichiometry="15" constant="true"/>
+          <speciesReference species="M_MAM03074c" stoichiometry="11" constant="true"/>
+          <speciesReference species="M_MAM03075c" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM03076c" stoichiometry="6" constant="true"/>
+          <speciesReference species="M_MAM03077c" stoichiometry="12" constant="true"/>
+          <speciesReference species="M_MAM03078c" stoichiometry="8" constant="true"/>
+          <speciesReference species="M_MAM03079c" stoichiometry="12" constant="true"/>
+          <speciesReference species="M_MAM03080c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03081c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03082c" stoichiometry="17" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05169" sboTerm="SBO:0000176" id="MAR05169" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05169" sboTerm="SBO:0000176" id="R_MAR05169" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -169947,7 +169987,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05169">
+            <rdf:Description rdf:about="#R_MAR05169">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_5169"/>
@@ -169957,57 +169997,57 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="855" constant="true"/>
-          <speciesReference species="MAM02006c" stoichiometry="21" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="856" constant="true"/>
-          <speciesReference species="MAM02335c" stoichiometry="21" constant="true"/>
-          <speciesReference species="MAM02340c" stoichiometry="20" constant="true"/>
-          <speciesReference species="MAM02341c" stoichiometry="11" constant="true"/>
-          <speciesReference species="MAM02342c" stoichiometry="10" constant="true"/>
-          <speciesReference species="MAM02351c" stoichiometry="5" constant="true"/>
-          <speciesReference species="MAM02376c" stoichiometry="17" constant="true"/>
-          <speciesReference species="MAM02377c" stoichiometry="22" constant="true"/>
-          <speciesReference species="MAM02380c" stoichiometry="6" constant="true"/>
-          <speciesReference species="MAM02401c" stoichiometry="10" constant="true"/>
-          <speciesReference species="MAM02404c" stoichiometry="31" constant="true"/>
-          <speciesReference species="MAM02405c" stoichiometry="19" constant="true"/>
-          <speciesReference species="MAM02408c" stoichiometry="12" constant="true"/>
-          <speciesReference species="MAM02412c" stoichiometry="6" constant="true"/>
-          <speciesReference species="MAM02415c" stoichiometry="12" constant="true"/>
-          <speciesReference species="MAM02416c" stoichiometry="20" constant="true"/>
-          <speciesReference species="MAM02419c" stoichiometry="12" constant="true"/>
-          <speciesReference species="MAM02420c" stoichiometry="5" constant="true"/>
-          <speciesReference species="MAM02421c" stoichiometry="4" constant="true"/>
-          <speciesReference species="MAM02423c" stoichiometry="21" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="855" constant="true"/>
+          <speciesReference species="M_MAM02006c" stoichiometry="21" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="856" constant="true"/>
+          <speciesReference species="M_MAM02335c" stoichiometry="21" constant="true"/>
+          <speciesReference species="M_MAM02340c" stoichiometry="20" constant="true"/>
+          <speciesReference species="M_MAM02341c" stoichiometry="11" constant="true"/>
+          <speciesReference species="M_MAM02342c" stoichiometry="10" constant="true"/>
+          <speciesReference species="M_MAM02351c" stoichiometry="5" constant="true"/>
+          <speciesReference species="M_MAM02376c" stoichiometry="17" constant="true"/>
+          <speciesReference species="M_MAM02377c" stoichiometry="22" constant="true"/>
+          <speciesReference species="M_MAM02380c" stoichiometry="6" constant="true"/>
+          <speciesReference species="M_MAM02401c" stoichiometry="10" constant="true"/>
+          <speciesReference species="M_MAM02404c" stoichiometry="31" constant="true"/>
+          <speciesReference species="M_MAM02405c" stoichiometry="19" constant="true"/>
+          <speciesReference species="M_MAM02408c" stoichiometry="12" constant="true"/>
+          <speciesReference species="M_MAM02412c" stoichiometry="6" constant="true"/>
+          <speciesReference species="M_MAM02415c" stoichiometry="12" constant="true"/>
+          <speciesReference species="M_MAM02416c" stoichiometry="20" constant="true"/>
+          <speciesReference species="M_MAM02419c" stoichiometry="12" constant="true"/>
+          <speciesReference species="M_MAM02420c" stoichiometry="5" constant="true"/>
+          <speciesReference species="M_MAM02421c" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM02423c" stoichiometry="21" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="855" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1147" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="855" constant="true"/>
-          <speciesReference species="MAM02935c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03063c" stoichiometry="21" constant="true"/>
-          <speciesReference species="MAM03064c" stoichiometry="20" constant="true"/>
-          <speciesReference species="MAM03065c" stoichiometry="11" constant="true"/>
-          <speciesReference species="MAM03066c" stoichiometry="10" constant="true"/>
-          <speciesReference species="MAM03067c" stoichiometry="5" constant="true"/>
-          <speciesReference species="MAM03068c" stoichiometry="17" constant="true"/>
-          <speciesReference species="MAM03069c" stoichiometry="22" constant="true"/>
-          <speciesReference species="MAM03070c" stoichiometry="21" constant="true"/>
-          <speciesReference species="MAM03071c" stoichiometry="6" constant="true"/>
-          <speciesReference species="MAM03072c" stoichiometry="10" constant="true"/>
-          <speciesReference species="MAM03073c" stoichiometry="31" constant="true"/>
-          <speciesReference species="MAM03074c" stoichiometry="19" constant="true"/>
-          <speciesReference species="MAM03075c" stoichiometry="12" constant="true"/>
-          <speciesReference species="MAM03076c" stoichiometry="6" constant="true"/>
-          <speciesReference species="MAM03077c" stoichiometry="12" constant="true"/>
-          <speciesReference species="MAM03078c" stoichiometry="20" constant="true"/>
-          <speciesReference species="MAM03079c" stoichiometry="12" constant="true"/>
-          <speciesReference species="MAM03080c" stoichiometry="5" constant="true"/>
-          <speciesReference species="MAM03081c" stoichiometry="4" constant="true"/>
-          <speciesReference species="MAM03082c" stoichiometry="21" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="855" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1147" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="855" constant="true"/>
+          <speciesReference species="M_MAM02935c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03063c" stoichiometry="21" constant="true"/>
+          <speciesReference species="M_MAM03064c" stoichiometry="20" constant="true"/>
+          <speciesReference species="M_MAM03065c" stoichiometry="11" constant="true"/>
+          <speciesReference species="M_MAM03066c" stoichiometry="10" constant="true"/>
+          <speciesReference species="M_MAM03067c" stoichiometry="5" constant="true"/>
+          <speciesReference species="M_MAM03068c" stoichiometry="17" constant="true"/>
+          <speciesReference species="M_MAM03069c" stoichiometry="22" constant="true"/>
+          <speciesReference species="M_MAM03070c" stoichiometry="21" constant="true"/>
+          <speciesReference species="M_MAM03071c" stoichiometry="6" constant="true"/>
+          <speciesReference species="M_MAM03072c" stoichiometry="10" constant="true"/>
+          <speciesReference species="M_MAM03073c" stoichiometry="31" constant="true"/>
+          <speciesReference species="M_MAM03074c" stoichiometry="19" constant="true"/>
+          <speciesReference species="M_MAM03075c" stoichiometry="12" constant="true"/>
+          <speciesReference species="M_MAM03076c" stoichiometry="6" constant="true"/>
+          <speciesReference species="M_MAM03077c" stoichiometry="12" constant="true"/>
+          <speciesReference species="M_MAM03078c" stoichiometry="20" constant="true"/>
+          <speciesReference species="M_MAM03079c" stoichiometry="12" constant="true"/>
+          <speciesReference species="M_MAM03080c" stoichiometry="5" constant="true"/>
+          <speciesReference species="M_MAM03081c" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM03082c" stoichiometry="21" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05170" sboTerm="SBO:0000176" id="MAR05170" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05170" sboTerm="SBO:0000176" id="R_MAR05170" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -170015,7 +170055,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05170">
+            <rdf:Description rdf:about="#R_MAR05170">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_5170"/>
@@ -170025,57 +170065,57 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="579" constant="true"/>
-          <speciesReference species="MAM02006c" stoichiometry="13" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="580" constant="true"/>
-          <speciesReference species="MAM02335c" stoichiometry="10" constant="true"/>
-          <speciesReference species="MAM02340c" stoichiometry="4" constant="true"/>
-          <speciesReference species="MAM02341c" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM02342c" stoichiometry="9" constant="true"/>
-          <speciesReference species="MAM02351c" stoichiometry="8" constant="true"/>
-          <speciesReference species="MAM02376c" stoichiometry="4" constant="true"/>
-          <speciesReference species="MAM02377c" stoichiometry="11" constant="true"/>
-          <speciesReference species="MAM02380c" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM02401c" stoichiometry="12" constant="true"/>
-          <speciesReference species="MAM02404c" stoichiometry="28" constant="true"/>
-          <speciesReference species="MAM02405c" stoichiometry="11" constant="true"/>
-          <speciesReference species="MAM02408c" stoichiometry="4" constant="true"/>
-          <speciesReference species="MAM02412c" stoichiometry="5" constant="true"/>
-          <speciesReference species="MAM02415c" stoichiometry="19" constant="true"/>
-          <speciesReference species="MAM02416c" stoichiometry="20" constant="true"/>
-          <speciesReference species="MAM02419c" stoichiometry="10" constant="true"/>
-          <speciesReference species="MAM02420c" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM02421c" stoichiometry="4" constant="true"/>
-          <speciesReference species="MAM02423c" stoichiometry="12" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="579" constant="true"/>
+          <speciesReference species="M_MAM02006c" stoichiometry="13" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="580" constant="true"/>
+          <speciesReference species="M_MAM02335c" stoichiometry="10" constant="true"/>
+          <speciesReference species="M_MAM02340c" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM02341c" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM02342c" stoichiometry="9" constant="true"/>
+          <speciesReference species="M_MAM02351c" stoichiometry="8" constant="true"/>
+          <speciesReference species="M_MAM02376c" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM02377c" stoichiometry="11" constant="true"/>
+          <speciesReference species="M_MAM02380c" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM02401c" stoichiometry="12" constant="true"/>
+          <speciesReference species="M_MAM02404c" stoichiometry="28" constant="true"/>
+          <speciesReference species="M_MAM02405c" stoichiometry="11" constant="true"/>
+          <speciesReference species="M_MAM02408c" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM02412c" stoichiometry="5" constant="true"/>
+          <speciesReference species="M_MAM02415c" stoichiometry="19" constant="true"/>
+          <speciesReference species="M_MAM02416c" stoichiometry="20" constant="true"/>
+          <speciesReference species="M_MAM02419c" stoichiometry="10" constant="true"/>
+          <speciesReference species="M_MAM02420c" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM02421c" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM02423c" stoichiometry="12" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="579" constant="true"/>
-          <speciesReference species="MAM02012c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="767" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="579" constant="true"/>
-          <speciesReference species="MAM03063c" stoichiometry="10" constant="true"/>
-          <speciesReference species="MAM03064c" stoichiometry="4" constant="true"/>
-          <speciesReference species="MAM03065c" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM03066c" stoichiometry="9" constant="true"/>
-          <speciesReference species="MAM03067c" stoichiometry="8" constant="true"/>
-          <speciesReference species="MAM03068c" stoichiometry="4" constant="true"/>
-          <speciesReference species="MAM03069c" stoichiometry="11" constant="true"/>
-          <speciesReference species="MAM03070c" stoichiometry="13" constant="true"/>
-          <speciesReference species="MAM03071c" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM03072c" stoichiometry="12" constant="true"/>
-          <speciesReference species="MAM03073c" stoichiometry="28" constant="true"/>
-          <speciesReference species="MAM03074c" stoichiometry="11" constant="true"/>
-          <speciesReference species="MAM03075c" stoichiometry="4" constant="true"/>
-          <speciesReference species="MAM03076c" stoichiometry="5" constant="true"/>
-          <speciesReference species="MAM03077c" stoichiometry="19" constant="true"/>
-          <speciesReference species="MAM03078c" stoichiometry="20" constant="true"/>
-          <speciesReference species="MAM03079c" stoichiometry="10" constant="true"/>
-          <speciesReference species="MAM03080c" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM03081c" stoichiometry="4" constant="true"/>
-          <speciesReference species="MAM03082c" stoichiometry="12" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="579" constant="true"/>
+          <speciesReference species="M_MAM02012c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="767" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="579" constant="true"/>
+          <speciesReference species="M_MAM03063c" stoichiometry="10" constant="true"/>
+          <speciesReference species="M_MAM03064c" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM03065c" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM03066c" stoichiometry="9" constant="true"/>
+          <speciesReference species="M_MAM03067c" stoichiometry="8" constant="true"/>
+          <speciesReference species="M_MAM03068c" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM03069c" stoichiometry="11" constant="true"/>
+          <speciesReference species="M_MAM03070c" stoichiometry="13" constant="true"/>
+          <speciesReference species="M_MAM03071c" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM03072c" stoichiometry="12" constant="true"/>
+          <speciesReference species="M_MAM03073c" stoichiometry="28" constant="true"/>
+          <speciesReference species="M_MAM03074c" stoichiometry="11" constant="true"/>
+          <speciesReference species="M_MAM03075c" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM03076c" stoichiometry="5" constant="true"/>
+          <speciesReference species="M_MAM03077c" stoichiometry="19" constant="true"/>
+          <speciesReference species="M_MAM03078c" stoichiometry="20" constant="true"/>
+          <speciesReference species="M_MAM03079c" stoichiometry="10" constant="true"/>
+          <speciesReference species="M_MAM03080c" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM03081c" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM03082c" stoichiometry="12" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05171" sboTerm="SBO:0000176" id="MAR05171" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05171" sboTerm="SBO:0000176" id="R_MAR05171" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -170083,7 +170123,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05171">
+            <rdf:Description rdf:about="#R_MAR05171">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_5171"/>
@@ -170093,57 +170133,57 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="975" constant="true"/>
-          <speciesReference species="MAM02006c" stoichiometry="28" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="976" constant="true"/>
-          <speciesReference species="MAM02335c" stoichiometry="38" constant="true"/>
-          <speciesReference species="MAM02340c" stoichiometry="23" constant="true"/>
-          <speciesReference species="MAM02341c" stoichiometry="5" constant="true"/>
-          <speciesReference species="MAM02342c" stoichiometry="14" constant="true"/>
-          <speciesReference species="MAM02351c" stoichiometry="6" constant="true"/>
-          <speciesReference species="MAM02376c" stoichiometry="7" constant="true"/>
-          <speciesReference species="MAM02377c" stoichiometry="15" constant="true"/>
-          <speciesReference species="MAM02380c" stoichiometry="10" constant="true"/>
-          <speciesReference species="MAM02401c" stoichiometry="6" constant="true"/>
-          <speciesReference species="MAM02404c" stoichiometry="37" constant="true"/>
-          <speciesReference species="MAM02405c" stoichiometry="14" constant="true"/>
-          <speciesReference species="MAM02408c" stoichiometry="14" constant="true"/>
-          <speciesReference species="MAM02412c" stoichiometry="10" constant="true"/>
-          <speciesReference species="MAM02415c" stoichiometry="26" constant="true"/>
-          <speciesReference species="MAM02416c" stoichiometry="25" constant="true"/>
-          <speciesReference species="MAM02419c" stoichiometry="10" constant="true"/>
-          <speciesReference species="MAM02420c" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM02421c" stoichiometry="14" constant="true"/>
-          <speciesReference species="MAM02423c" stoichiometry="20" constant="true"/>
-        </listOfReactants>
-        <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="975" constant="true"/>
-          <speciesReference species="MAM01358c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1308" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="975" constant="true"/>
-          <speciesReference species="MAM03063c" stoichiometry="38" constant="true"/>
-          <speciesReference species="MAM03064c" stoichiometry="23" constant="true"/>
-          <speciesReference species="MAM03065c" stoichiometry="5" constant="true"/>
-          <speciesReference species="MAM03066c" stoichiometry="14" constant="true"/>
-          <speciesReference species="MAM03067c" stoichiometry="6" constant="true"/>
-          <speciesReference species="MAM03068c" stoichiometry="7" constant="true"/>
-          <speciesReference species="MAM03069c" stoichiometry="15" constant="true"/>
-          <speciesReference species="MAM03070c" stoichiometry="28" constant="true"/>
-          <speciesReference species="MAM03071c" stoichiometry="10" constant="true"/>
-          <speciesReference species="MAM03072c" stoichiometry="6" constant="true"/>
-          <speciesReference species="MAM03073c" stoichiometry="37" constant="true"/>
-          <speciesReference species="MAM03074c" stoichiometry="14" constant="true"/>
-          <speciesReference species="MAM03075c" stoichiometry="14" constant="true"/>
-          <speciesReference species="MAM03076c" stoichiometry="10" constant="true"/>
-          <speciesReference species="MAM03077c" stoichiometry="26" constant="true"/>
-          <speciesReference species="MAM03078c" stoichiometry="25" constant="true"/>
-          <speciesReference species="MAM03079c" stoichiometry="10" constant="true"/>
-          <speciesReference species="MAM03080c" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM03081c" stoichiometry="14" constant="true"/>
-          <speciesReference species="MAM03082c" stoichiometry="20" constant="true"/>
-        </listOfProducts>
-      </reaction>
-      <reaction metaid="MAR05172" sboTerm="SBO:0000176" id="MAR05172" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+          <speciesReference species="M_MAM01371c" stoichiometry="975" constant="true"/>
+          <speciesReference species="M_MAM02006c" stoichiometry="28" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="976" constant="true"/>
+          <speciesReference species="M_MAM02335c" stoichiometry="38" constant="true"/>
+          <speciesReference species="M_MAM02340c" stoichiometry="23" constant="true"/>
+          <speciesReference species="M_MAM02341c" stoichiometry="5" constant="true"/>
+          <speciesReference species="M_MAM02342c" stoichiometry="14" constant="true"/>
+          <speciesReference species="M_MAM02351c" stoichiometry="6" constant="true"/>
+          <speciesReference species="M_MAM02376c" stoichiometry="7" constant="true"/>
+          <speciesReference species="M_MAM02377c" stoichiometry="15" constant="true"/>
+          <speciesReference species="M_MAM02380c" stoichiometry="10" constant="true"/>
+          <speciesReference species="M_MAM02401c" stoichiometry="6" constant="true"/>
+          <speciesReference species="M_MAM02404c" stoichiometry="37" constant="true"/>
+          <speciesReference species="M_MAM02405c" stoichiometry="14" constant="true"/>
+          <speciesReference species="M_MAM02408c" stoichiometry="14" constant="true"/>
+          <speciesReference species="M_MAM02412c" stoichiometry="10" constant="true"/>
+          <speciesReference species="M_MAM02415c" stoichiometry="26" constant="true"/>
+          <speciesReference species="M_MAM02416c" stoichiometry="25" constant="true"/>
+          <speciesReference species="M_MAM02419c" stoichiometry="10" constant="true"/>
+          <speciesReference species="M_MAM02420c" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM02421c" stoichiometry="14" constant="true"/>
+          <speciesReference species="M_MAM02423c" stoichiometry="20" constant="true"/>
+        </listOfReactants>
+        <listOfProducts>
+          <speciesReference species="M_MAM01285c" stoichiometry="975" constant="true"/>
+          <speciesReference species="M_MAM01358c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1308" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="975" constant="true"/>
+          <speciesReference species="M_MAM03063c" stoichiometry="38" constant="true"/>
+          <speciesReference species="M_MAM03064c" stoichiometry="23" constant="true"/>
+          <speciesReference species="M_MAM03065c" stoichiometry="5" constant="true"/>
+          <speciesReference species="M_MAM03066c" stoichiometry="14" constant="true"/>
+          <speciesReference species="M_MAM03067c" stoichiometry="6" constant="true"/>
+          <speciesReference species="M_MAM03068c" stoichiometry="7" constant="true"/>
+          <speciesReference species="M_MAM03069c" stoichiometry="15" constant="true"/>
+          <speciesReference species="M_MAM03070c" stoichiometry="28" constant="true"/>
+          <speciesReference species="M_MAM03071c" stoichiometry="10" constant="true"/>
+          <speciesReference species="M_MAM03072c" stoichiometry="6" constant="true"/>
+          <speciesReference species="M_MAM03073c" stoichiometry="37" constant="true"/>
+          <speciesReference species="M_MAM03074c" stoichiometry="14" constant="true"/>
+          <speciesReference species="M_MAM03075c" stoichiometry="14" constant="true"/>
+          <speciesReference species="M_MAM03076c" stoichiometry="10" constant="true"/>
+          <speciesReference species="M_MAM03077c" stoichiometry="26" constant="true"/>
+          <speciesReference species="M_MAM03078c" stoichiometry="25" constant="true"/>
+          <speciesReference species="M_MAM03079c" stoichiometry="10" constant="true"/>
+          <speciesReference species="M_MAM03080c" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM03081c" stoichiometry="14" constant="true"/>
+          <speciesReference species="M_MAM03082c" stoichiometry="20" constant="true"/>
+        </listOfProducts>
+      </reaction>
+      <reaction metaid="R_MAR05172" sboTerm="SBO:0000176" id="R_MAR05172" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -170152,7 +170192,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05172">
+            <rdf:Description rdf:about="#R_MAR05172">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_5172"/>
@@ -170163,57 +170203,57 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1050" constant="true"/>
-          <speciesReference species="MAM02006c" stoichiometry="18" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1051" constant="true"/>
-          <speciesReference species="MAM02335c" stoichiometry="22" constant="true"/>
-          <speciesReference species="MAM02340c" stoichiometry="12" constant="true"/>
-          <speciesReference species="MAM02341c" stoichiometry="12" constant="true"/>
-          <speciesReference species="MAM02342c" stoichiometry="26" constant="true"/>
-          <speciesReference species="MAM02351c" stoichiometry="6" constant="true"/>
-          <speciesReference species="MAM02376c" stoichiometry="14" constant="true"/>
-          <speciesReference species="MAM02377c" stoichiometry="15" constant="true"/>
-          <speciesReference species="MAM02380c" stoichiometry="9" constant="true"/>
-          <speciesReference species="MAM02401c" stoichiometry="12" constant="true"/>
-          <speciesReference species="MAM02404c" stoichiometry="39" constant="true"/>
-          <speciesReference species="MAM02405c" stoichiometry="18" constant="true"/>
-          <speciesReference species="MAM02408c" stoichiometry="8" constant="true"/>
-          <speciesReference species="MAM02412c" stoichiometry="20" constant="true"/>
-          <speciesReference species="MAM02415c" stoichiometry="15" constant="true"/>
-          <speciesReference species="MAM02416c" stoichiometry="31" constant="true"/>
-          <speciesReference species="MAM02419c" stoichiometry="25" constant="true"/>
-          <speciesReference species="MAM02420c" stoichiometry="7" constant="true"/>
-          <speciesReference species="MAM02421c" stoichiometry="13" constant="true"/>
-          <speciesReference species="MAM02423c" stoichiometry="28" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1050" constant="true"/>
+          <speciesReference species="M_MAM02006c" stoichiometry="18" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1051" constant="true"/>
+          <speciesReference species="M_MAM02335c" stoichiometry="22" constant="true"/>
+          <speciesReference species="M_MAM02340c" stoichiometry="12" constant="true"/>
+          <speciesReference species="M_MAM02341c" stoichiometry="12" constant="true"/>
+          <speciesReference species="M_MAM02342c" stoichiometry="26" constant="true"/>
+          <speciesReference species="M_MAM02351c" stoichiometry="6" constant="true"/>
+          <speciesReference species="M_MAM02376c" stoichiometry="14" constant="true"/>
+          <speciesReference species="M_MAM02377c" stoichiometry="15" constant="true"/>
+          <speciesReference species="M_MAM02380c" stoichiometry="9" constant="true"/>
+          <speciesReference species="M_MAM02401c" stoichiometry="12" constant="true"/>
+          <speciesReference species="M_MAM02404c" stoichiometry="39" constant="true"/>
+          <speciesReference species="M_MAM02405c" stoichiometry="18" constant="true"/>
+          <speciesReference species="M_MAM02408c" stoichiometry="8" constant="true"/>
+          <speciesReference species="M_MAM02412c" stoichiometry="20" constant="true"/>
+          <speciesReference species="M_MAM02415c" stoichiometry="15" constant="true"/>
+          <speciesReference species="M_MAM02416c" stoichiometry="31" constant="true"/>
+          <speciesReference species="M_MAM02419c" stoichiometry="25" constant="true"/>
+          <speciesReference species="M_MAM02420c" stoichiometry="7" constant="true"/>
+          <speciesReference species="M_MAM02421c" stoichiometry="13" constant="true"/>
+          <speciesReference species="M_MAM02423c" stoichiometry="28" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1050" constant="true"/>
-          <speciesReference species="MAM01996c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1389" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1050" constant="true"/>
-          <speciesReference species="MAM03063c" stoichiometry="22" constant="true"/>
-          <speciesReference species="MAM03064c" stoichiometry="12" constant="true"/>
-          <speciesReference species="MAM03065c" stoichiometry="12" constant="true"/>
-          <speciesReference species="MAM03066c" stoichiometry="26" constant="true"/>
-          <speciesReference species="MAM03067c" stoichiometry="6" constant="true"/>
-          <speciesReference species="MAM03068c" stoichiometry="14" constant="true"/>
-          <speciesReference species="MAM03069c" stoichiometry="15" constant="true"/>
-          <speciesReference species="MAM03070c" stoichiometry="18" constant="true"/>
-          <speciesReference species="MAM03071c" stoichiometry="9" constant="true"/>
-          <speciesReference species="MAM03072c" stoichiometry="12" constant="true"/>
-          <speciesReference species="MAM03073c" stoichiometry="39" constant="true"/>
-          <speciesReference species="MAM03074c" stoichiometry="18" constant="true"/>
-          <speciesReference species="MAM03075c" stoichiometry="8" constant="true"/>
-          <speciesReference species="MAM03076c" stoichiometry="20" constant="true"/>
-          <speciesReference species="MAM03077c" stoichiometry="15" constant="true"/>
-          <speciesReference species="MAM03078c" stoichiometry="31" constant="true"/>
-          <speciesReference species="MAM03079c" stoichiometry="25" constant="true"/>
-          <speciesReference species="MAM03080c" stoichiometry="7" constant="true"/>
-          <speciesReference species="MAM03081c" stoichiometry="13" constant="true"/>
-          <speciesReference species="MAM03082c" stoichiometry="28" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1050" constant="true"/>
+          <speciesReference species="M_MAM01996c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1389" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1050" constant="true"/>
+          <speciesReference species="M_MAM03063c" stoichiometry="22" constant="true"/>
+          <speciesReference species="M_MAM03064c" stoichiometry="12" constant="true"/>
+          <speciesReference species="M_MAM03065c" stoichiometry="12" constant="true"/>
+          <speciesReference species="M_MAM03066c" stoichiometry="26" constant="true"/>
+          <speciesReference species="M_MAM03067c" stoichiometry="6" constant="true"/>
+          <speciesReference species="M_MAM03068c" stoichiometry="14" constant="true"/>
+          <speciesReference species="M_MAM03069c" stoichiometry="15" constant="true"/>
+          <speciesReference species="M_MAM03070c" stoichiometry="18" constant="true"/>
+          <speciesReference species="M_MAM03071c" stoichiometry="9" constant="true"/>
+          <speciesReference species="M_MAM03072c" stoichiometry="12" constant="true"/>
+          <speciesReference species="M_MAM03073c" stoichiometry="39" constant="true"/>
+          <speciesReference species="M_MAM03074c" stoichiometry="18" constant="true"/>
+          <speciesReference species="M_MAM03075c" stoichiometry="8" constant="true"/>
+          <speciesReference species="M_MAM03076c" stoichiometry="20" constant="true"/>
+          <speciesReference species="M_MAM03077c" stoichiometry="15" constant="true"/>
+          <speciesReference species="M_MAM03078c" stoichiometry="31" constant="true"/>
+          <speciesReference species="M_MAM03079c" stoichiometry="25" constant="true"/>
+          <speciesReference species="M_MAM03080c" stoichiometry="7" constant="true"/>
+          <speciesReference species="M_MAM03081c" stoichiometry="13" constant="true"/>
+          <speciesReference species="M_MAM03082c" stoichiometry="28" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05173" sboTerm="SBO:0000176" id="MAR05173" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05173" sboTerm="SBO:0000176" id="R_MAR05173" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -170221,7 +170261,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05173">
+            <rdf:Description rdf:about="#R_MAR05173">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_5173"/>
@@ -170231,55 +170271,55 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1404" constant="true"/>
-          <speciesReference species="MAM02006c" stoichiometry="28" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1405" constant="true"/>
-          <speciesReference species="MAM02335c" stoichiometry="31" constant="true"/>
-          <speciesReference species="MAM02340c" stoichiometry="19" constant="true"/>
-          <speciesReference species="MAM02341c" stoichiometry="19" constant="true"/>
-          <speciesReference species="MAM02342c" stoichiometry="27" constant="true"/>
-          <speciesReference species="MAM02351c" stoichiometry="19" constant="true"/>
-          <speciesReference species="MAM02376c" stoichiometry="16" constant="true"/>
-          <speciesReference species="MAM02377c" stoichiometry="34" constant="true"/>
-          <speciesReference species="MAM02380c" stoichiometry="13" constant="true"/>
-          <speciesReference species="MAM02401c" stoichiometry="29" constant="true"/>
-          <speciesReference species="MAM02404c" stoichiometry="47" constant="true"/>
-          <speciesReference species="MAM02405c" stoichiometry="33" constant="true"/>
-          <speciesReference species="MAM02408c" stoichiometry="15" constant="true"/>
-          <speciesReference species="MAM02412c" stoichiometry="22" constant="true"/>
-          <speciesReference species="MAM02415c" stoichiometry="20" constant="true"/>
-          <speciesReference species="MAM02416c" stoichiometry="37" constant="true"/>
-          <speciesReference species="MAM02419c" stoichiometry="18" constant="true"/>
-          <speciesReference species="MAM02421c" stoichiometry="14" constant="true"/>
-          <speciesReference species="MAM02423c" stoichiometry="27" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1404" constant="true"/>
+          <speciesReference species="M_MAM02006c" stoichiometry="28" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1405" constant="true"/>
+          <speciesReference species="M_MAM02335c" stoichiometry="31" constant="true"/>
+          <speciesReference species="M_MAM02340c" stoichiometry="19" constant="true"/>
+          <speciesReference species="M_MAM02341c" stoichiometry="19" constant="true"/>
+          <speciesReference species="M_MAM02342c" stoichiometry="27" constant="true"/>
+          <speciesReference species="M_MAM02351c" stoichiometry="19" constant="true"/>
+          <speciesReference species="M_MAM02376c" stoichiometry="16" constant="true"/>
+          <speciesReference species="M_MAM02377c" stoichiometry="34" constant="true"/>
+          <speciesReference species="M_MAM02380c" stoichiometry="13" constant="true"/>
+          <speciesReference species="M_MAM02401c" stoichiometry="29" constant="true"/>
+          <speciesReference species="M_MAM02404c" stoichiometry="47" constant="true"/>
+          <speciesReference species="M_MAM02405c" stoichiometry="33" constant="true"/>
+          <speciesReference species="M_MAM02408c" stoichiometry="15" constant="true"/>
+          <speciesReference species="M_MAM02412c" stoichiometry="22" constant="true"/>
+          <speciesReference species="M_MAM02415c" stoichiometry="20" constant="true"/>
+          <speciesReference species="M_MAM02416c" stoichiometry="37" constant="true"/>
+          <speciesReference species="M_MAM02419c" stoichiometry="18" constant="true"/>
+          <speciesReference species="M_MAM02421c" stoichiometry="14" constant="true"/>
+          <speciesReference species="M_MAM02423c" stoichiometry="27" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1404" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1863" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1404" constant="true"/>
-          <speciesReference species="MAM02757c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03063c" stoichiometry="31" constant="true"/>
-          <speciesReference species="MAM03064c" stoichiometry="19" constant="true"/>
-          <speciesReference species="MAM03065c" stoichiometry="19" constant="true"/>
-          <speciesReference species="MAM03066c" stoichiometry="27" constant="true"/>
-          <speciesReference species="MAM03067c" stoichiometry="19" constant="true"/>
-          <speciesReference species="MAM03068c" stoichiometry="16" constant="true"/>
-          <speciesReference species="MAM03069c" stoichiometry="34" constant="true"/>
-          <speciesReference species="MAM03070c" stoichiometry="28" constant="true"/>
-          <speciesReference species="MAM03071c" stoichiometry="13" constant="true"/>
-          <speciesReference species="MAM03072c" stoichiometry="29" constant="true"/>
-          <speciesReference species="MAM03073c" stoichiometry="47" constant="true"/>
-          <speciesReference species="MAM03074c" stoichiometry="33" constant="true"/>
-          <speciesReference species="MAM03075c" stoichiometry="15" constant="true"/>
-          <speciesReference species="MAM03076c" stoichiometry="22" constant="true"/>
-          <speciesReference species="MAM03077c" stoichiometry="20" constant="true"/>
-          <speciesReference species="MAM03078c" stoichiometry="37" constant="true"/>
-          <speciesReference species="MAM03079c" stoichiometry="18" constant="true"/>
-          <speciesReference species="MAM03081c" stoichiometry="14" constant="true"/>
-          <speciesReference species="MAM03082c" stoichiometry="27" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1404" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1863" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1404" constant="true"/>
+          <speciesReference species="M_MAM02757c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03063c" stoichiometry="31" constant="true"/>
+          <speciesReference species="M_MAM03064c" stoichiometry="19" constant="true"/>
+          <speciesReference species="M_MAM03065c" stoichiometry="19" constant="true"/>
+          <speciesReference species="M_MAM03066c" stoichiometry="27" constant="true"/>
+          <speciesReference species="M_MAM03067c" stoichiometry="19" constant="true"/>
+          <speciesReference species="M_MAM03068c" stoichiometry="16" constant="true"/>
+          <speciesReference species="M_MAM03069c" stoichiometry="34" constant="true"/>
+          <speciesReference species="M_MAM03070c" stoichiometry="28" constant="true"/>
+          <speciesReference species="M_MAM03071c" stoichiometry="13" constant="true"/>
+          <speciesReference species="M_MAM03072c" stoichiometry="29" constant="true"/>
+          <speciesReference species="M_MAM03073c" stoichiometry="47" constant="true"/>
+          <speciesReference species="M_MAM03074c" stoichiometry="33" constant="true"/>
+          <speciesReference species="M_MAM03075c" stoichiometry="15" constant="true"/>
+          <speciesReference species="M_MAM03076c" stoichiometry="22" constant="true"/>
+          <speciesReference species="M_MAM03077c" stoichiometry="20" constant="true"/>
+          <speciesReference species="M_MAM03078c" stoichiometry="37" constant="true"/>
+          <speciesReference species="M_MAM03079c" stoichiometry="18" constant="true"/>
+          <speciesReference species="M_MAM03081c" stoichiometry="14" constant="true"/>
+          <speciesReference species="M_MAM03082c" stoichiometry="27" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05174" sboTerm="SBO:0000176" id="MAR05174" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05174" sboTerm="SBO:0000176" id="R_MAR05174" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -170287,7 +170327,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05174">
+            <rdf:Description rdf:about="#R_MAR05174">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_5174"/>
@@ -170297,57 +170337,57 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1425" constant="true"/>
-          <speciesReference species="MAM02006c" stoichiometry="32" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1426" constant="true"/>
-          <speciesReference species="MAM02335c" stoichiometry="34" constant="true"/>
-          <speciesReference species="MAM02340c" stoichiometry="22" constant="true"/>
-          <speciesReference species="MAM02341c" stoichiometry="20" constant="true"/>
-          <speciesReference species="MAM02342c" stoichiometry="22" constant="true"/>
-          <speciesReference species="MAM02351c" stoichiometry="10" constant="true"/>
-          <speciesReference species="MAM02376c" stoichiometry="13" constant="true"/>
-          <speciesReference species="MAM02377c" stoichiometry="31" constant="true"/>
-          <speciesReference species="MAM02380c" stoichiometry="16" constant="true"/>
-          <speciesReference species="MAM02401c" stoichiometry="25" constant="true"/>
-          <speciesReference species="MAM02404c" stoichiometry="38" constant="true"/>
-          <speciesReference species="MAM02405c" stoichiometry="35" constant="true"/>
-          <speciesReference species="MAM02408c" stoichiometry="7" constant="true"/>
-          <speciesReference species="MAM02412c" stoichiometry="21" constant="true"/>
-          <speciesReference species="MAM02415c" stoichiometry="20" constant="true"/>
-          <speciesReference species="MAM02416c" stoichiometry="43" constant="true"/>
-          <speciesReference species="MAM02419c" stoichiometry="25" constant="true"/>
-          <speciesReference species="MAM02420c" stoichiometry="9" constant="true"/>
-          <speciesReference species="MAM02421c" stoichiometry="17" constant="true"/>
-          <speciesReference species="MAM02423c" stoichiometry="35" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1425" constant="true"/>
+          <speciesReference species="M_MAM02006c" stoichiometry="32" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1426" constant="true"/>
+          <speciesReference species="M_MAM02335c" stoichiometry="34" constant="true"/>
+          <speciesReference species="M_MAM02340c" stoichiometry="22" constant="true"/>
+          <speciesReference species="M_MAM02341c" stoichiometry="20" constant="true"/>
+          <speciesReference species="M_MAM02342c" stoichiometry="22" constant="true"/>
+          <speciesReference species="M_MAM02351c" stoichiometry="10" constant="true"/>
+          <speciesReference species="M_MAM02376c" stoichiometry="13" constant="true"/>
+          <speciesReference species="M_MAM02377c" stoichiometry="31" constant="true"/>
+          <speciesReference species="M_MAM02380c" stoichiometry="16" constant="true"/>
+          <speciesReference species="M_MAM02401c" stoichiometry="25" constant="true"/>
+          <speciesReference species="M_MAM02404c" stoichiometry="38" constant="true"/>
+          <speciesReference species="M_MAM02405c" stoichiometry="35" constant="true"/>
+          <speciesReference species="M_MAM02408c" stoichiometry="7" constant="true"/>
+          <speciesReference species="M_MAM02412c" stoichiometry="21" constant="true"/>
+          <speciesReference species="M_MAM02415c" stoichiometry="20" constant="true"/>
+          <speciesReference species="M_MAM02416c" stoichiometry="43" constant="true"/>
+          <speciesReference species="M_MAM02419c" stoichiometry="25" constant="true"/>
+          <speciesReference species="M_MAM02420c" stoichiometry="9" constant="true"/>
+          <speciesReference species="M_MAM02421c" stoichiometry="17" constant="true"/>
+          <speciesReference species="M_MAM02423c" stoichiometry="35" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1425" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1904" constant="true"/>
-          <speciesReference species="MAM02414c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1425" constant="true"/>
-          <speciesReference species="MAM03063c" stoichiometry="34" constant="true"/>
-          <speciesReference species="MAM03064c" stoichiometry="22" constant="true"/>
-          <speciesReference species="MAM03065c" stoichiometry="20" constant="true"/>
-          <speciesReference species="MAM03066c" stoichiometry="22" constant="true"/>
-          <speciesReference species="MAM03067c" stoichiometry="10" constant="true"/>
-          <speciesReference species="MAM03068c" stoichiometry="13" constant="true"/>
-          <speciesReference species="MAM03069c" stoichiometry="31" constant="true"/>
-          <speciesReference species="MAM03070c" stoichiometry="32" constant="true"/>
-          <speciesReference species="MAM03071c" stoichiometry="16" constant="true"/>
-          <speciesReference species="MAM03072c" stoichiometry="25" constant="true"/>
-          <speciesReference species="MAM03073c" stoichiometry="38" constant="true"/>
-          <speciesReference species="MAM03074c" stoichiometry="35" constant="true"/>
-          <speciesReference species="MAM03075c" stoichiometry="7" constant="true"/>
-          <speciesReference species="MAM03076c" stoichiometry="21" constant="true"/>
-          <speciesReference species="MAM03077c" stoichiometry="20" constant="true"/>
-          <speciesReference species="MAM03078c" stoichiometry="43" constant="true"/>
-          <speciesReference species="MAM03079c" stoichiometry="25" constant="true"/>
-          <speciesReference species="MAM03080c" stoichiometry="9" constant="true"/>
-          <speciesReference species="MAM03081c" stoichiometry="17" constant="true"/>
-          <speciesReference species="MAM03082c" stoichiometry="35" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1425" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1904" constant="true"/>
+          <speciesReference species="M_MAM02414c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1425" constant="true"/>
+          <speciesReference species="M_MAM03063c" stoichiometry="34" constant="true"/>
+          <speciesReference species="M_MAM03064c" stoichiometry="22" constant="true"/>
+          <speciesReference species="M_MAM03065c" stoichiometry="20" constant="true"/>
+          <speciesReference species="M_MAM03066c" stoichiometry="22" constant="true"/>
+          <speciesReference species="M_MAM03067c" stoichiometry="10" constant="true"/>
+          <speciesReference species="M_MAM03068c" stoichiometry="13" constant="true"/>
+          <speciesReference species="M_MAM03069c" stoichiometry="31" constant="true"/>
+          <speciesReference species="M_MAM03070c" stoichiometry="32" constant="true"/>
+          <speciesReference species="M_MAM03071c" stoichiometry="16" constant="true"/>
+          <speciesReference species="M_MAM03072c" stoichiometry="25" constant="true"/>
+          <speciesReference species="M_MAM03073c" stoichiometry="38" constant="true"/>
+          <speciesReference species="M_MAM03074c" stoichiometry="35" constant="true"/>
+          <speciesReference species="M_MAM03075c" stoichiometry="7" constant="true"/>
+          <speciesReference species="M_MAM03076c" stoichiometry="21" constant="true"/>
+          <speciesReference species="M_MAM03077c" stoichiometry="20" constant="true"/>
+          <speciesReference species="M_MAM03078c" stoichiometry="43" constant="true"/>
+          <speciesReference species="M_MAM03079c" stoichiometry="25" constant="true"/>
+          <speciesReference species="M_MAM03080c" stoichiometry="9" constant="true"/>
+          <speciesReference species="M_MAM03081c" stoichiometry="17" constant="true"/>
+          <speciesReference species="M_MAM03082c" stoichiometry="35" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07282" sboTerm="SBO:0000176" id="MAR07282" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07282" sboTerm="SBO:0000176" id="R_MAR07282" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -170355,7 +170395,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#meta_MAR07282">
+            <rdf:Description rdf:about="#meta_R_MAR07282">
               <bqbiol:is>
                 <rdf:Bag/>
               </bqbiol:is>
@@ -170363,15 +170403,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00196c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01369c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00196c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01369c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00198c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00198c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07616" sboTerm="SBO:0000176" id="MAR07616" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07616" sboTerm="SBO:0000176" id="R_MAR07616" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -170379,7 +170419,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07616">
+            <rdf:Description rdf:about="#R_MAR07616">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_7616"/>
@@ -170389,15 +170429,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00196c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03101c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00196c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03101c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00206c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00206c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07619" sboTerm="SBO:0000176" id="MAR07619" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07619" sboTerm="SBO:0000176" id="R_MAR07619" name="3&apos;-Phosphoadenylylsulfate:protein-tyrosine O-sulfotransferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -170405,7 +170445,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07619">
+            <rdf:Description rdf:about="#R_MAR07619">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.8.2.20"/>
@@ -170418,19 +170458,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00206c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02682c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00206c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02682c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00217c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02681c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00217c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02681c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Tpst"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR09735" sboTerm="SBO:0000176" id="MAR09735" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09735" sboTerm="SBO:0000176" id="R_MAR09735" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -170438,7 +170478,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09735">
+            <rdf:Description rdf:about="#R_MAR09735">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_9735"/>
@@ -170448,15 +170488,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00199c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00199c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00196c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01588c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00196c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01588c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07621" sboTerm="SBO:0000176" id="MAR07621" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07621" sboTerm="SBO:0000176" id="R_MAR07621" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -170464,7 +170504,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07621">
+            <rdf:Description rdf:about="#R_MAR07621">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_7621"/>
@@ -170474,15 +170514,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00196c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01365c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00196c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01365c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00197c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00197c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05259" sboTerm="SBO:0000176" id="MAR05259" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05259" sboTerm="SBO:0000176" id="R_MAR05259" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -170490,7 +170530,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05259">
+            <rdf:Description rdf:about="#R_MAR05259">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/r1334"/>
@@ -170500,34 +170540,34 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01308l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371l" stoichiometry="608" constant="true"/>
-          <speciesReference species="MAM02040l" stoichiometry="1216" constant="true"/>
+          <speciesReference species="M_MAM01308l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371l" stoichiometry="608" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1216" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285l" stoichiometry="608" constant="true"/>
-          <speciesReference species="MAM01307l" stoichiometry="63" constant="true"/>
-          <speciesReference species="MAM01365l" stoichiometry="27" constant="true"/>
-          <speciesReference species="MAM01369l" stoichiometry="17" constant="true"/>
-          <speciesReference species="MAM01370l" stoichiometry="36" constant="true"/>
-          <speciesReference species="MAM01628l" stoichiometry="35" constant="true"/>
-          <speciesReference species="MAM01974l" stoichiometry="62" constant="true"/>
-          <speciesReference species="MAM01975l" stoichiometry="20" constant="true"/>
-          <speciesReference species="MAM01986l" stoichiometry="13" constant="true"/>
-          <speciesReference species="MAM02039l" stoichiometry="619" constant="true"/>
-          <speciesReference species="MAM02125l" stoichiometry="16" constant="true"/>
-          <speciesReference species="MAM02184l" stoichiometry="9" constant="true"/>
-          <speciesReference species="MAM02360l" stoichiometry="64" constant="true"/>
-          <speciesReference species="MAM02426l" stoichiometry="60" constant="true"/>
-          <speciesReference species="MAM02471l" stoichiometry="7" constant="true"/>
-          <speciesReference species="MAM02724l" stoichiometry="35" constant="true"/>
-          <speciesReference species="MAM02751l" stoichiometry="608" constant="true"/>
-          <speciesReference species="MAM02770l" stoichiometry="24" constant="true"/>
-          <speciesReference species="MAM02896l" stoichiometry="28" constant="true"/>
-          <speciesReference species="MAM02993l" stoichiometry="29" constant="true"/>
-          <speciesReference species="MAM03089l" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03101l" stoichiometry="19" constant="true"/>
-          <speciesReference species="MAM03135l" stoichiometry="43" constant="true"/>
+          <speciesReference species="M_MAM01285l" stoichiometry="608" constant="true"/>
+          <speciesReference species="M_MAM01307l" stoichiometry="63" constant="true"/>
+          <speciesReference species="M_MAM01365l" stoichiometry="27" constant="true"/>
+          <speciesReference species="M_MAM01369l" stoichiometry="17" constant="true"/>
+          <speciesReference species="M_MAM01370l" stoichiometry="36" constant="true"/>
+          <speciesReference species="M_MAM01628l" stoichiometry="35" constant="true"/>
+          <speciesReference species="M_MAM01974l" stoichiometry="62" constant="true"/>
+          <speciesReference species="M_MAM01975l" stoichiometry="20" constant="true"/>
+          <speciesReference species="M_MAM01986l" stoichiometry="13" constant="true"/>
+          <speciesReference species="M_MAM02039l" stoichiometry="619" constant="true"/>
+          <speciesReference species="M_MAM02125l" stoichiometry="16" constant="true"/>
+          <speciesReference species="M_MAM02184l" stoichiometry="9" constant="true"/>
+          <speciesReference species="M_MAM02360l" stoichiometry="64" constant="true"/>
+          <speciesReference species="M_MAM02426l" stoichiometry="60" constant="true"/>
+          <speciesReference species="M_MAM02471l" stoichiometry="7" constant="true"/>
+          <speciesReference species="M_MAM02724l" stoichiometry="35" constant="true"/>
+          <speciesReference species="M_MAM02751l" stoichiometry="608" constant="true"/>
+          <speciesReference species="M_MAM02770l" stoichiometry="24" constant="true"/>
+          <speciesReference species="M_MAM02896l" stoichiometry="28" constant="true"/>
+          <speciesReference species="M_MAM02993l" stoichiometry="29" constant="true"/>
+          <speciesReference species="M_MAM03089l" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03101l" stoichiometry="19" constant="true"/>
+          <speciesReference species="M_MAM03135l" stoichiometry="43" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -170541,7 +170581,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05260" sboTerm="SBO:0000176" id="MAR05260" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05260" sboTerm="SBO:0000176" id="R_MAR05260" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -170549,7 +170589,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05260">
+            <rdf:Description rdf:about="#R_MAR05260">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/r1335"/>
@@ -170559,37 +170599,37 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01343c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371c" stoichiometry="422" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="844" constant="true"/>
+          <speciesReference species="M_MAM01343c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="422" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="844" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="422" constant="true"/>
-          <speciesReference species="MAM01307c" stoichiometry="34" constant="true"/>
-          <speciesReference species="MAM01365c" stoichiometry="16" constant="true"/>
-          <speciesReference species="MAM01369c" stoichiometry="19" constant="true"/>
-          <speciesReference species="MAM01370c" stoichiometry="25" constant="true"/>
-          <speciesReference species="MAM01628c" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM01974c" stoichiometry="29" constant="true"/>
-          <speciesReference species="MAM01975c" stoichiometry="17" constant="true"/>
-          <speciesReference species="MAM01986c" stoichiometry="16" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="434" constant="true"/>
-          <speciesReference species="MAM02125c" stoichiometry="9" constant="true"/>
-          <speciesReference species="MAM02184c" stoichiometry="20" constant="true"/>
-          <speciesReference species="MAM02360c" stoichiometry="59" constant="true"/>
-          <speciesReference species="MAM02426c" stoichiometry="26" constant="true"/>
-          <speciesReference species="MAM02471c" stoichiometry="14" constant="true"/>
-          <speciesReference species="MAM02724c" stoichiometry="25" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="422" constant="true"/>
-          <speciesReference species="MAM02770c" stoichiometry="16" constant="true"/>
-          <speciesReference species="MAM02896c" stoichiometry="30" constant="true"/>
-          <speciesReference species="MAM02993c" stoichiometry="29" constant="true"/>
-          <speciesReference species="MAM03089c" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM03101c" stoichiometry="9" constant="true"/>
-          <speciesReference species="MAM03135c" stoichiometry="24" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="422" constant="true"/>
+          <speciesReference species="M_MAM01307c" stoichiometry="34" constant="true"/>
+          <speciesReference species="M_MAM01365c" stoichiometry="16" constant="true"/>
+          <speciesReference species="M_MAM01369c" stoichiometry="19" constant="true"/>
+          <speciesReference species="M_MAM01370c" stoichiometry="25" constant="true"/>
+          <speciesReference species="M_MAM01628c" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM01974c" stoichiometry="29" constant="true"/>
+          <speciesReference species="M_MAM01975c" stoichiometry="17" constant="true"/>
+          <speciesReference species="M_MAM01986c" stoichiometry="16" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="434" constant="true"/>
+          <speciesReference species="M_MAM02125c" stoichiometry="9" constant="true"/>
+          <speciesReference species="M_MAM02184c" stoichiometry="20" constant="true"/>
+          <speciesReference species="M_MAM02360c" stoichiometry="59" constant="true"/>
+          <speciesReference species="M_MAM02426c" stoichiometry="26" constant="true"/>
+          <speciesReference species="M_MAM02471c" stoichiometry="14" constant="true"/>
+          <speciesReference species="M_MAM02724c" stoichiometry="25" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="422" constant="true"/>
+          <speciesReference species="M_MAM02770c" stoichiometry="16" constant="true"/>
+          <speciesReference species="M_MAM02896c" stoichiometry="30" constant="true"/>
+          <speciesReference species="M_MAM02993c" stoichiometry="29" constant="true"/>
+          <speciesReference species="M_MAM03089c" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM03101c" stoichiometry="9" constant="true"/>
+          <speciesReference species="M_MAM03135c" stoichiometry="24" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05261" sboTerm="SBO:0000176" id="MAR05261" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05261" sboTerm="SBO:0000176" id="R_MAR05261" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -170597,7 +170637,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05261">
+            <rdf:Description rdf:about="#R_MAR05261">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/r1336"/>
@@ -170607,34 +170647,34 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01343l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371l" stoichiometry="422" constant="true"/>
-          <speciesReference species="MAM02040l" stoichiometry="844" constant="true"/>
+          <speciesReference species="M_MAM01343l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371l" stoichiometry="422" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="844" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285l" stoichiometry="422" constant="true"/>
-          <speciesReference species="MAM01307l" stoichiometry="34" constant="true"/>
-          <speciesReference species="MAM01365l" stoichiometry="16" constant="true"/>
-          <speciesReference species="MAM01369l" stoichiometry="19" constant="true"/>
-          <speciesReference species="MAM01370l" stoichiometry="25" constant="true"/>
-          <speciesReference species="MAM01628l" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM01974l" stoichiometry="29" constant="true"/>
-          <speciesReference species="MAM01975l" stoichiometry="17" constant="true"/>
-          <speciesReference species="MAM01986l" stoichiometry="16" constant="true"/>
-          <speciesReference species="MAM02039l" stoichiometry="434" constant="true"/>
-          <speciesReference species="MAM02125l" stoichiometry="9" constant="true"/>
-          <speciesReference species="MAM02184l" stoichiometry="20" constant="true"/>
-          <speciesReference species="MAM02360l" stoichiometry="59" constant="true"/>
-          <speciesReference species="MAM02426l" stoichiometry="26" constant="true"/>
-          <speciesReference species="MAM02471l" stoichiometry="14" constant="true"/>
-          <speciesReference species="MAM02724l" stoichiometry="25" constant="true"/>
-          <speciesReference species="MAM02751l" stoichiometry="422" constant="true"/>
-          <speciesReference species="MAM02770l" stoichiometry="16" constant="true"/>
-          <speciesReference species="MAM02896l" stoichiometry="30" constant="true"/>
-          <speciesReference species="MAM02993l" stoichiometry="29" constant="true"/>
-          <speciesReference species="MAM03089l" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM03101l" stoichiometry="9" constant="true"/>
-          <speciesReference species="MAM03135l" stoichiometry="24" constant="true"/>
+          <speciesReference species="M_MAM01285l" stoichiometry="422" constant="true"/>
+          <speciesReference species="M_MAM01307l" stoichiometry="34" constant="true"/>
+          <speciesReference species="M_MAM01365l" stoichiometry="16" constant="true"/>
+          <speciesReference species="M_MAM01369l" stoichiometry="19" constant="true"/>
+          <speciesReference species="M_MAM01370l" stoichiometry="25" constant="true"/>
+          <speciesReference species="M_MAM01628l" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM01974l" stoichiometry="29" constant="true"/>
+          <speciesReference species="M_MAM01975l" stoichiometry="17" constant="true"/>
+          <speciesReference species="M_MAM01986l" stoichiometry="16" constant="true"/>
+          <speciesReference species="M_MAM02039l" stoichiometry="434" constant="true"/>
+          <speciesReference species="M_MAM02125l" stoichiometry="9" constant="true"/>
+          <speciesReference species="M_MAM02184l" stoichiometry="20" constant="true"/>
+          <speciesReference species="M_MAM02360l" stoichiometry="59" constant="true"/>
+          <speciesReference species="M_MAM02426l" stoichiometry="26" constant="true"/>
+          <speciesReference species="M_MAM02471l" stoichiometry="14" constant="true"/>
+          <speciesReference species="M_MAM02724l" stoichiometry="25" constant="true"/>
+          <speciesReference species="M_MAM02751l" stoichiometry="422" constant="true"/>
+          <speciesReference species="M_MAM02770l" stoichiometry="16" constant="true"/>
+          <speciesReference species="M_MAM02896l" stoichiometry="30" constant="true"/>
+          <speciesReference species="M_MAM02993l" stoichiometry="29" constant="true"/>
+          <speciesReference species="M_MAM03089l" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM03101l" stoichiometry="9" constant="true"/>
+          <speciesReference species="M_MAM03135l" stoichiometry="24" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -170648,7 +170688,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05262" sboTerm="SBO:0000176" id="MAR05262" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05262" sboTerm="SBO:0000176" id="R_MAR05262" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -170656,7 +170696,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05262">
+            <rdf:Description rdf:about="#R_MAR05262">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/r1337"/>
@@ -170666,37 +170706,37 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01345c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371c" stoichiometry="417" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="834" constant="true"/>
+          <speciesReference species="M_MAM01345c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="417" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="834" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="417" constant="true"/>
-          <speciesReference species="MAM01307c" stoichiometry="26" constant="true"/>
-          <speciesReference species="MAM01365c" stoichiometry="7" constant="true"/>
-          <speciesReference species="MAM01369c" stoichiometry="19" constant="true"/>
-          <speciesReference species="MAM01370c" stoichiometry="24" constant="true"/>
-          <speciesReference species="MAM01628c" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM01974c" stoichiometry="32" constant="true"/>
-          <speciesReference species="MAM01975c" stoichiometry="18" constant="true"/>
-          <speciesReference species="MAM01986c" stoichiometry="24" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="432" constant="true"/>
-          <speciesReference species="MAM02125c" stoichiometry="13" constant="true"/>
-          <speciesReference species="MAM02184c" stoichiometry="20" constant="true"/>
-          <speciesReference species="MAM02360c" stoichiometry="51" constant="true"/>
-          <speciesReference species="MAM02426c" stoichiometry="34" constant="true"/>
-          <speciesReference species="MAM02471c" stoichiometry="10" constant="true"/>
-          <speciesReference species="MAM02724c" stoichiometry="27" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="417" constant="true"/>
-          <speciesReference species="MAM02770c" stoichiometry="19" constant="true"/>
-          <speciesReference species="MAM02896c" stoichiometry="25" constant="true"/>
-          <speciesReference species="MAM02993c" stoichiometry="30" constant="true"/>
-          <speciesReference species="MAM03089c" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM03101c" stoichiometry="6" constant="true"/>
-          <speciesReference species="MAM03135c" stoichiometry="27" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="417" constant="true"/>
+          <speciesReference species="M_MAM01307c" stoichiometry="26" constant="true"/>
+          <speciesReference species="M_MAM01365c" stoichiometry="7" constant="true"/>
+          <speciesReference species="M_MAM01369c" stoichiometry="19" constant="true"/>
+          <speciesReference species="M_MAM01370c" stoichiometry="24" constant="true"/>
+          <speciesReference species="M_MAM01628c" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM01974c" stoichiometry="32" constant="true"/>
+          <speciesReference species="M_MAM01975c" stoichiometry="18" constant="true"/>
+          <speciesReference species="M_MAM01986c" stoichiometry="24" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="432" constant="true"/>
+          <speciesReference species="M_MAM02125c" stoichiometry="13" constant="true"/>
+          <speciesReference species="M_MAM02184c" stoichiometry="20" constant="true"/>
+          <speciesReference species="M_MAM02360c" stoichiometry="51" constant="true"/>
+          <speciesReference species="M_MAM02426c" stoichiometry="34" constant="true"/>
+          <speciesReference species="M_MAM02471c" stoichiometry="10" constant="true"/>
+          <speciesReference species="M_MAM02724c" stoichiometry="27" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="417" constant="true"/>
+          <speciesReference species="M_MAM02770c" stoichiometry="19" constant="true"/>
+          <speciesReference species="M_MAM02896c" stoichiometry="25" constant="true"/>
+          <speciesReference species="M_MAM02993c" stoichiometry="30" constant="true"/>
+          <speciesReference species="M_MAM03089c" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM03101c" stoichiometry="6" constant="true"/>
+          <speciesReference species="M_MAM03135c" stoichiometry="27" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05263" sboTerm="SBO:0000176" id="MAR05263" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05263" sboTerm="SBO:0000176" id="R_MAR05263" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -170704,7 +170744,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05263">
+            <rdf:Description rdf:about="#R_MAR05263">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/r1338"/>
@@ -170714,34 +170754,34 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01345l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371l" stoichiometry="417" constant="true"/>
-          <speciesReference species="MAM02040l" stoichiometry="834" constant="true"/>
+          <speciesReference species="M_MAM01345l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371l" stoichiometry="417" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="834" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285l" stoichiometry="417" constant="true"/>
-          <speciesReference species="MAM01307l" stoichiometry="26" constant="true"/>
-          <speciesReference species="MAM01365l" stoichiometry="7" constant="true"/>
-          <speciesReference species="MAM01369l" stoichiometry="19" constant="true"/>
-          <speciesReference species="MAM01370l" stoichiometry="24" constant="true"/>
-          <speciesReference species="MAM01628l" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM01974l" stoichiometry="32" constant="true"/>
-          <speciesReference species="MAM01975l" stoichiometry="18" constant="true"/>
-          <speciesReference species="MAM01986l" stoichiometry="24" constant="true"/>
-          <speciesReference species="MAM02039l" stoichiometry="432" constant="true"/>
-          <speciesReference species="MAM02125l" stoichiometry="13" constant="true"/>
-          <speciesReference species="MAM02184l" stoichiometry="20" constant="true"/>
-          <speciesReference species="MAM02360l" stoichiometry="51" constant="true"/>
-          <speciesReference species="MAM02426l" stoichiometry="34" constant="true"/>
-          <speciesReference species="MAM02471l" stoichiometry="10" constant="true"/>
-          <speciesReference species="MAM02724l" stoichiometry="27" constant="true"/>
-          <speciesReference species="MAM02751l" stoichiometry="417" constant="true"/>
-          <speciesReference species="MAM02770l" stoichiometry="19" constant="true"/>
-          <speciesReference species="MAM02896l" stoichiometry="25" constant="true"/>
-          <speciesReference species="MAM02993l" stoichiometry="30" constant="true"/>
-          <speciesReference species="MAM03089l" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM03101l" stoichiometry="6" constant="true"/>
-          <speciesReference species="MAM03135l" stoichiometry="27" constant="true"/>
+          <speciesReference species="M_MAM01285l" stoichiometry="417" constant="true"/>
+          <speciesReference species="M_MAM01307l" stoichiometry="26" constant="true"/>
+          <speciesReference species="M_MAM01365l" stoichiometry="7" constant="true"/>
+          <speciesReference species="M_MAM01369l" stoichiometry="19" constant="true"/>
+          <speciesReference species="M_MAM01370l" stoichiometry="24" constant="true"/>
+          <speciesReference species="M_MAM01628l" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM01974l" stoichiometry="32" constant="true"/>
+          <speciesReference species="M_MAM01975l" stoichiometry="18" constant="true"/>
+          <speciesReference species="M_MAM01986l" stoichiometry="24" constant="true"/>
+          <speciesReference species="M_MAM02039l" stoichiometry="432" constant="true"/>
+          <speciesReference species="M_MAM02125l" stoichiometry="13" constant="true"/>
+          <speciesReference species="M_MAM02184l" stoichiometry="20" constant="true"/>
+          <speciesReference species="M_MAM02360l" stoichiometry="51" constant="true"/>
+          <speciesReference species="M_MAM02426l" stoichiometry="34" constant="true"/>
+          <speciesReference species="M_MAM02471l" stoichiometry="10" constant="true"/>
+          <speciesReference species="M_MAM02724l" stoichiometry="27" constant="true"/>
+          <speciesReference species="M_MAM02751l" stoichiometry="417" constant="true"/>
+          <speciesReference species="M_MAM02770l" stoichiometry="19" constant="true"/>
+          <speciesReference species="M_MAM02896l" stoichiometry="25" constant="true"/>
+          <speciesReference species="M_MAM02993l" stoichiometry="30" constant="true"/>
+          <speciesReference species="M_MAM03089l" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM03101l" stoichiometry="6" constant="true"/>
+          <speciesReference species="M_MAM03135l" stoichiometry="27" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -170755,7 +170795,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05264" sboTerm="SBO:0000176" id="MAR05264" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05264" sboTerm="SBO:0000176" id="R_MAR05264" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -170763,7 +170803,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05264">
+            <rdf:Description rdf:about="#R_MAR05264">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/r1341"/>
@@ -170773,37 +170813,37 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01351c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371c" stoichiometry="4560" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="9120" constant="true"/>
+          <speciesReference species="M_MAM01351c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="4560" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="9120" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="4560" constant="true"/>
-          <speciesReference species="MAM01307c" stoichiometry="275" constant="true"/>
-          <speciesReference species="MAM01365c" stoichiometry="150" constant="true"/>
-          <speciesReference species="MAM01369c" stoichiometry="247" constant="true"/>
-          <speciesReference species="MAM01370c" stoichiometry="233" constant="true"/>
-          <speciesReference species="MAM01628c" stoichiometry="25" constant="true"/>
-          <speciesReference species="MAM01974c" stoichiometry="298" constant="true"/>
-          <speciesReference species="MAM01975c" stoichiometry="230" constant="true"/>
-          <speciesReference species="MAM01986c" stoichiometry="207" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="4584" constant="true"/>
-          <speciesReference species="MAM02125c" stoichiometry="115" constant="true"/>
-          <speciesReference species="MAM02184c" stoichiometry="285" constant="true"/>
-          <speciesReference species="MAM02360c" stoichiometry="533" constant="true"/>
-          <speciesReference species="MAM02426c" stoichiometry="357" constant="true"/>
-          <speciesReference species="MAM02471c" stoichiometry="79" constant="true"/>
-          <speciesReference species="MAM02724c" stoichiometry="224" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="4560" constant="true"/>
-          <speciesReference species="MAM02770c" stoichiometry="171" constant="true"/>
-          <speciesReference species="MAM02896c" stoichiometry="392" constant="true"/>
-          <speciesReference species="MAM02993c" stoichiometry="300" constant="true"/>
-          <speciesReference species="MAM03089c" stoichiometry="37" constant="true"/>
-          <speciesReference species="MAM03101c" stoichiometry="151" constant="true"/>
-          <speciesReference species="MAM03135c" stoichiometry="252" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="4560" constant="true"/>
+          <speciesReference species="M_MAM01307c" stoichiometry="275" constant="true"/>
+          <speciesReference species="M_MAM01365c" stoichiometry="150" constant="true"/>
+          <speciesReference species="M_MAM01369c" stoichiometry="247" constant="true"/>
+          <speciesReference species="M_MAM01370c" stoichiometry="233" constant="true"/>
+          <speciesReference species="M_MAM01628c" stoichiometry="25" constant="true"/>
+          <speciesReference species="M_MAM01974c" stoichiometry="298" constant="true"/>
+          <speciesReference species="M_MAM01975c" stoichiometry="230" constant="true"/>
+          <speciesReference species="M_MAM01986c" stoichiometry="207" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="4584" constant="true"/>
+          <speciesReference species="M_MAM02125c" stoichiometry="115" constant="true"/>
+          <speciesReference species="M_MAM02184c" stoichiometry="285" constant="true"/>
+          <speciesReference species="M_MAM02360c" stoichiometry="533" constant="true"/>
+          <speciesReference species="M_MAM02426c" stoichiometry="357" constant="true"/>
+          <speciesReference species="M_MAM02471c" stoichiometry="79" constant="true"/>
+          <speciesReference species="M_MAM02724c" stoichiometry="224" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="4560" constant="true"/>
+          <speciesReference species="M_MAM02770c" stoichiometry="171" constant="true"/>
+          <speciesReference species="M_MAM02896c" stoichiometry="392" constant="true"/>
+          <speciesReference species="M_MAM02993c" stoichiometry="300" constant="true"/>
+          <speciesReference species="M_MAM03089c" stoichiometry="37" constant="true"/>
+          <speciesReference species="M_MAM03101c" stoichiometry="151" constant="true"/>
+          <speciesReference species="M_MAM03135c" stoichiometry="252" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05265" sboTerm="SBO:0000176" id="MAR05265" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05265" sboTerm="SBO:0000176" id="R_MAR05265" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -170811,7 +170851,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05265">
+            <rdf:Description rdf:about="#R_MAR05265">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/r1342"/>
@@ -170821,34 +170861,34 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01351l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371l" stoichiometry="4560" constant="true"/>
-          <speciesReference species="MAM02040l" stoichiometry="9120" constant="true"/>
+          <speciesReference species="M_MAM01351l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371l" stoichiometry="4560" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="9120" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285l" stoichiometry="4560" constant="true"/>
-          <speciesReference species="MAM01307l" stoichiometry="275" constant="true"/>
-          <speciesReference species="MAM01365l" stoichiometry="150" constant="true"/>
-          <speciesReference species="MAM01369l" stoichiometry="247" constant="true"/>
-          <speciesReference species="MAM01370l" stoichiometry="233" constant="true"/>
-          <speciesReference species="MAM01628l" stoichiometry="25" constant="true"/>
-          <speciesReference species="MAM01974l" stoichiometry="298" constant="true"/>
-          <speciesReference species="MAM01975l" stoichiometry="230" constant="true"/>
-          <speciesReference species="MAM01986l" stoichiometry="207" constant="true"/>
-          <speciesReference species="MAM02039l" stoichiometry="4584" constant="true"/>
-          <speciesReference species="MAM02125l" stoichiometry="115" constant="true"/>
-          <speciesReference species="MAM02184l" stoichiometry="285" constant="true"/>
-          <speciesReference species="MAM02360l" stoichiometry="533" constant="true"/>
-          <speciesReference species="MAM02426l" stoichiometry="357" constant="true"/>
-          <speciesReference species="MAM02471l" stoichiometry="79" constant="true"/>
-          <speciesReference species="MAM02724l" stoichiometry="224" constant="true"/>
-          <speciesReference species="MAM02751l" stoichiometry="4560" constant="true"/>
-          <speciesReference species="MAM02770l" stoichiometry="171" constant="true"/>
-          <speciesReference species="MAM02896l" stoichiometry="392" constant="true"/>
-          <speciesReference species="MAM02993l" stoichiometry="300" constant="true"/>
-          <speciesReference species="MAM03089l" stoichiometry="37" constant="true"/>
-          <speciesReference species="MAM03101l" stoichiometry="151" constant="true"/>
-          <speciesReference species="MAM03135l" stoichiometry="252" constant="true"/>
+          <speciesReference species="M_MAM01285l" stoichiometry="4560" constant="true"/>
+          <speciesReference species="M_MAM01307l" stoichiometry="275" constant="true"/>
+          <speciesReference species="M_MAM01365l" stoichiometry="150" constant="true"/>
+          <speciesReference species="M_MAM01369l" stoichiometry="247" constant="true"/>
+          <speciesReference species="M_MAM01370l" stoichiometry="233" constant="true"/>
+          <speciesReference species="M_MAM01628l" stoichiometry="25" constant="true"/>
+          <speciesReference species="M_MAM01974l" stoichiometry="298" constant="true"/>
+          <speciesReference species="M_MAM01975l" stoichiometry="230" constant="true"/>
+          <speciesReference species="M_MAM01986l" stoichiometry="207" constant="true"/>
+          <speciesReference species="M_MAM02039l" stoichiometry="4584" constant="true"/>
+          <speciesReference species="M_MAM02125l" stoichiometry="115" constant="true"/>
+          <speciesReference species="M_MAM02184l" stoichiometry="285" constant="true"/>
+          <speciesReference species="M_MAM02360l" stoichiometry="533" constant="true"/>
+          <speciesReference species="M_MAM02426l" stoichiometry="357" constant="true"/>
+          <speciesReference species="M_MAM02471l" stoichiometry="79" constant="true"/>
+          <speciesReference species="M_MAM02724l" stoichiometry="224" constant="true"/>
+          <speciesReference species="M_MAM02751l" stoichiometry="4560" constant="true"/>
+          <speciesReference species="M_MAM02770l" stoichiometry="171" constant="true"/>
+          <speciesReference species="M_MAM02896l" stoichiometry="392" constant="true"/>
+          <speciesReference species="M_MAM02993l" stoichiometry="300" constant="true"/>
+          <speciesReference species="M_MAM03089l" stoichiometry="37" constant="true"/>
+          <speciesReference species="M_MAM03101l" stoichiometry="151" constant="true"/>
+          <speciesReference species="M_MAM03135l" stoichiometry="252" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -170862,7 +170902,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05266" sboTerm="SBO:0000176" id="MAR05266" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05266" sboTerm="SBO:0000176" id="R_MAR05266" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -170870,7 +170910,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05266">
+            <rdf:Description rdf:about="#R_MAR05266">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/r1358"/>
@@ -170880,36 +170920,36 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01349c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371c" stoichiometry="123" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="246" constant="true"/>
+          <speciesReference species="M_MAM01349c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="123" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="246" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="123" constant="true"/>
-          <speciesReference species="MAM01307c" stoichiometry="11" constant="true"/>
-          <speciesReference species="MAM01365c" stoichiometry="9" constant="true"/>
-          <speciesReference species="MAM01369c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01370c" stoichiometry="8" constant="true"/>
-          <speciesReference species="MAM01628c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM01974c" stoichiometry="5" constant="true"/>
-          <speciesReference species="MAM01975c" stoichiometry="7" constant="true"/>
-          <speciesReference species="MAM01986c" stoichiometry="6" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="123" constant="true"/>
-          <speciesReference species="MAM02125c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02184c" stoichiometry="4" constant="true"/>
-          <speciesReference species="MAM02360c" stoichiometry="20" constant="true"/>
-          <speciesReference species="MAM02426c" stoichiometry="4" constant="true"/>
-          <speciesReference species="MAM02471c" stoichiometry="5" constant="true"/>
-          <speciesReference species="MAM02724c" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="123" constant="true"/>
-          <speciesReference species="MAM02770c" stoichiometry="9" constant="true"/>
-          <speciesReference species="MAM02896c" stoichiometry="8" constant="true"/>
-          <speciesReference species="MAM02993c" stoichiometry="6" constant="true"/>
-          <speciesReference species="MAM03101c" stoichiometry="4" constant="true"/>
-          <speciesReference species="MAM03135c" stoichiometry="11" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="123" constant="true"/>
+          <speciesReference species="M_MAM01307c" stoichiometry="11" constant="true"/>
+          <speciesReference species="M_MAM01365c" stoichiometry="9" constant="true"/>
+          <speciesReference species="M_MAM01369c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01370c" stoichiometry="8" constant="true"/>
+          <speciesReference species="M_MAM01628c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01974c" stoichiometry="5" constant="true"/>
+          <speciesReference species="M_MAM01975c" stoichiometry="7" constant="true"/>
+          <speciesReference species="M_MAM01986c" stoichiometry="6" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="123" constant="true"/>
+          <speciesReference species="M_MAM02125c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02184c" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM02360c" stoichiometry="20" constant="true"/>
+          <speciesReference species="M_MAM02426c" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM02471c" stoichiometry="5" constant="true"/>
+          <speciesReference species="M_MAM02724c" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="123" constant="true"/>
+          <speciesReference species="M_MAM02770c" stoichiometry="9" constant="true"/>
+          <speciesReference species="M_MAM02896c" stoichiometry="8" constant="true"/>
+          <speciesReference species="M_MAM02993c" stoichiometry="6" constant="true"/>
+          <speciesReference species="M_MAM03101c" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM03135c" stoichiometry="11" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05267" sboTerm="SBO:0000176" id="MAR05267" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05267" sboTerm="SBO:0000176" id="R_MAR05267" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -170917,7 +170957,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05267">
+            <rdf:Description rdf:about="#R_MAR05267">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/r1359"/>
@@ -170927,36 +170967,36 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371m" stoichiometry="86" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="172" constant="true"/>
-          <speciesReference species="MAM02485m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371m" stoichiometry="86" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="172" constant="true"/>
+          <speciesReference species="M_MAM02485m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285m" stoichiometry="86" constant="true"/>
-          <speciesReference species="MAM01307m" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM01365m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01369m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01370m" stoichiometry="13" constant="true"/>
-          <speciesReference species="MAM01628m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01974m" stoichiometry="9" constant="true"/>
-          <speciesReference species="MAM01975m" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM01986m" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="100" constant="true"/>
-          <speciesReference species="MAM02125m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02184m" stoichiometry="8" constant="true"/>
-          <speciesReference species="MAM02360m" stoichiometry="10" constant="true"/>
-          <speciesReference species="MAM02426m" stoichiometry="7" constant="true"/>
-          <speciesReference species="MAM02471m" stoichiometry="5" constant="true"/>
-          <speciesReference species="MAM02724m" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM02751m" stoichiometry="86" constant="true"/>
-          <speciesReference species="MAM02770m" stoichiometry="5" constant="true"/>
-          <speciesReference species="MAM02896m" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM02993m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03101m" stoichiometry="4" constant="true"/>
-          <speciesReference species="MAM03135m" stoichiometry="6" constant="true"/>
+          <speciesReference species="M_MAM01285m" stoichiometry="86" constant="true"/>
+          <speciesReference species="M_MAM01307m" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM01365m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01369m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01370m" stoichiometry="13" constant="true"/>
+          <speciesReference species="M_MAM01628m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01974m" stoichiometry="9" constant="true"/>
+          <speciesReference species="M_MAM01975m" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM01986m" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="100" constant="true"/>
+          <speciesReference species="M_MAM02125m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02184m" stoichiometry="8" constant="true"/>
+          <speciesReference species="M_MAM02360m" stoichiometry="10" constant="true"/>
+          <speciesReference species="M_MAM02426m" stoichiometry="7" constant="true"/>
+          <speciesReference species="M_MAM02471m" stoichiometry="5" constant="true"/>
+          <speciesReference species="M_MAM02724m" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM02751m" stoichiometry="86" constant="true"/>
+          <speciesReference species="M_MAM02770m" stoichiometry="5" constant="true"/>
+          <speciesReference species="M_MAM02896m" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM02993m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03101m" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM03135m" stoichiometry="6" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05268" sboTerm="SBO:0000176" id="MAR05268" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05268" sboTerm="SBO:0000176" id="R_MAR05268" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -170964,7 +171004,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05268">
+            <rdf:Description rdf:about="#R_MAR05268">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/r1343"/>
@@ -170974,34 +171014,34 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01353c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371c" stoichiometry="82" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="164" constant="true"/>
+          <speciesReference species="M_MAM01353c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="82" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="164" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="82" constant="true"/>
-          <speciesReference species="MAM01307c" stoichiometry="5" constant="true"/>
-          <speciesReference species="MAM01365c" stoichiometry="4" constant="true"/>
-          <speciesReference species="MAM01369c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01370c" stoichiometry="4" constant="true"/>
-          <speciesReference species="MAM01974c" stoichiometry="8" constant="true"/>
-          <speciesReference species="MAM01975c" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM01986c" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="81" constant="true"/>
-          <speciesReference species="MAM02184c" stoichiometry="4" constant="true"/>
-          <speciesReference species="MAM02360c" stoichiometry="12" constant="true"/>
-          <speciesReference species="MAM02426c" stoichiometry="9" constant="true"/>
-          <speciesReference species="MAM02471c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02724c" stoichiometry="4" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="82" constant="true"/>
-          <speciesReference species="MAM02770c" stoichiometry="4" constant="true"/>
-          <speciesReference species="MAM02896c" stoichiometry="9" constant="true"/>
-          <speciesReference species="MAM02993c" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM03089c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03135c" stoichiometry="7" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="82" constant="true"/>
+          <speciesReference species="M_MAM01307c" stoichiometry="5" constant="true"/>
+          <speciesReference species="M_MAM01365c" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM01369c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01370c" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM01974c" stoichiometry="8" constant="true"/>
+          <speciesReference species="M_MAM01975c" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM01986c" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="81" constant="true"/>
+          <speciesReference species="M_MAM02184c" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM02360c" stoichiometry="12" constant="true"/>
+          <speciesReference species="M_MAM02426c" stoichiometry="9" constant="true"/>
+          <speciesReference species="M_MAM02471c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02724c" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="82" constant="true"/>
+          <speciesReference species="M_MAM02770c" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM02896c" stoichiometry="9" constant="true"/>
+          <speciesReference species="M_MAM02993c" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM03089c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03135c" stoichiometry="7" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05269" sboTerm="SBO:0000176" id="MAR05269" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05269" sboTerm="SBO:0000176" id="R_MAR05269" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -171009,7 +171049,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05269">
+            <rdf:Description rdf:about="#R_MAR05269">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/r1344"/>
@@ -171019,35 +171059,35 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01354c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371c" stoichiometry="100" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="200" constant="true"/>
+          <speciesReference species="M_MAM01354c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="100" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="200" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="100" constant="true"/>
-          <speciesReference species="MAM01307c" stoichiometry="7" constant="true"/>
-          <speciesReference species="MAM01365c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM01369c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01370c" stoichiometry="4" constant="true"/>
-          <speciesReference species="MAM01974c" stoichiometry="8" constant="true"/>
-          <speciesReference species="MAM01975c" stoichiometry="8" constant="true"/>
-          <speciesReference species="MAM01986c" stoichiometry="5" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="104" constant="true"/>
-          <speciesReference species="MAM02184c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02360c" stoichiometry="15" constant="true"/>
-          <speciesReference species="MAM02426c" stoichiometry="6" constant="true"/>
-          <speciesReference species="MAM02471c" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM02724c" stoichiometry="4" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="100" constant="true"/>
-          <speciesReference species="MAM02770c" stoichiometry="5" constant="true"/>
-          <speciesReference species="MAM02896c" stoichiometry="9" constant="true"/>
-          <speciesReference species="MAM02993c" stoichiometry="10" constant="true"/>
-          <speciesReference species="MAM03089c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03101c" stoichiometry="5" constant="true"/>
-          <speciesReference species="MAM03135c" stoichiometry="7" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="100" constant="true"/>
+          <speciesReference species="M_MAM01307c" stoichiometry="7" constant="true"/>
+          <speciesReference species="M_MAM01365c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01369c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01370c" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM01974c" stoichiometry="8" constant="true"/>
+          <speciesReference species="M_MAM01975c" stoichiometry="8" constant="true"/>
+          <speciesReference species="M_MAM01986c" stoichiometry="5" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="104" constant="true"/>
+          <speciesReference species="M_MAM02184c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02360c" stoichiometry="15" constant="true"/>
+          <speciesReference species="M_MAM02426c" stoichiometry="6" constant="true"/>
+          <speciesReference species="M_MAM02471c" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM02724c" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="100" constant="true"/>
+          <speciesReference species="M_MAM02770c" stoichiometry="5" constant="true"/>
+          <speciesReference species="M_MAM02896c" stoichiometry="9" constant="true"/>
+          <speciesReference species="M_MAM02993c" stoichiometry="10" constant="true"/>
+          <speciesReference species="M_MAM03089c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03101c" stoichiometry="5" constant="true"/>
+          <speciesReference species="M_MAM03135c" stoichiometry="7" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05270" sboTerm="SBO:0000176" id="MAR05270" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05270" sboTerm="SBO:0000176" id="R_MAR05270" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -171055,7 +171095,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05270">
+            <rdf:Description rdf:about="#R_MAR05270">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/r1345"/>
@@ -171065,34 +171105,34 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01355c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371c" stoichiometry="98" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="196" constant="true"/>
+          <speciesReference species="M_MAM01355c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="98" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="196" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="98" constant="true"/>
-          <speciesReference species="MAM01307c" stoichiometry="15" constant="true"/>
-          <speciesReference species="MAM01365c" stoichiometry="4" constant="true"/>
-          <speciesReference species="MAM01370c" stoichiometry="7" constant="true"/>
-          <speciesReference species="MAM01974c" stoichiometry="5" constant="true"/>
-          <speciesReference species="MAM01975c" stoichiometry="6" constant="true"/>
-          <speciesReference species="MAM01986c" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="100" constant="true"/>
-          <speciesReference species="MAM02125c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02360c" stoichiometry="11" constant="true"/>
-          <speciesReference species="MAM02426c" stoichiometry="6" constant="true"/>
-          <speciesReference species="MAM02471c" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM02724c" stoichiometry="4" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="98" constant="true"/>
-          <speciesReference species="MAM02770c" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM02896c" stoichiometry="12" constant="true"/>
-          <speciesReference species="MAM02993c" stoichiometry="5" constant="true"/>
-          <speciesReference species="MAM03089c" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM03101c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03135c" stoichiometry="9" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="98" constant="true"/>
+          <speciesReference species="M_MAM01307c" stoichiometry="15" constant="true"/>
+          <speciesReference species="M_MAM01365c" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM01370c" stoichiometry="7" constant="true"/>
+          <speciesReference species="M_MAM01974c" stoichiometry="5" constant="true"/>
+          <speciesReference species="M_MAM01975c" stoichiometry="6" constant="true"/>
+          <speciesReference species="M_MAM01986c" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="100" constant="true"/>
+          <speciesReference species="M_MAM02125c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02360c" stoichiometry="11" constant="true"/>
+          <speciesReference species="M_MAM02426c" stoichiometry="6" constant="true"/>
+          <speciesReference species="M_MAM02471c" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM02724c" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="98" constant="true"/>
+          <speciesReference species="M_MAM02770c" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM02896c" stoichiometry="12" constant="true"/>
+          <speciesReference species="M_MAM02993c" stoichiometry="5" constant="true"/>
+          <speciesReference species="M_MAM03089c" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM03101c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03135c" stoichiometry="9" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05271" sboTerm="SBO:0000176" id="MAR05271" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05271" sboTerm="SBO:0000176" id="R_MAR05271" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -171100,7 +171140,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05271">
+            <rdf:Description rdf:about="#R_MAR05271">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/r1348"/>
@@ -171110,37 +171150,37 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="2673" constant="true"/>
-          <speciesReference species="MAM01827c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="5346" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="2673" constant="true"/>
+          <speciesReference species="M_MAM01827c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="5346" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="2673" constant="true"/>
-          <speciesReference species="MAM01307c" stoichiometry="134" constant="true"/>
-          <speciesReference species="MAM01365c" stoichiometry="134" constant="true"/>
-          <speciesReference species="MAM01369c" stoichiometry="138" constant="true"/>
-          <speciesReference species="MAM01370c" stoichiometry="176" constant="true"/>
-          <speciesReference species="MAM01628c" stoichiometry="48" constant="true"/>
-          <speciesReference species="MAM01974c" stoichiometry="186" constant="true"/>
-          <speciesReference species="MAM01975c" stoichiometry="110" constant="true"/>
-          <speciesReference species="MAM01986c" stoichiometry="262" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="2747" constant="true"/>
-          <speciesReference species="MAM02125c" stoichiometry="62" constant="true"/>
-          <speciesReference species="MAM02184c" stoichiometry="104" constant="true"/>
-          <speciesReference species="MAM02360c" stoichiometry="166" constant="true"/>
-          <speciesReference species="MAM02426c" stoichiometry="154" constant="true"/>
-          <speciesReference species="MAM02471c" stoichiometry="48" constant="true"/>
-          <speciesReference species="MAM02724c" stoichiometry="98" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="2673" constant="true"/>
-          <speciesReference species="MAM02770c" stoichiometry="114" constant="true"/>
-          <speciesReference species="MAM02896c" stoichiometry="278" constant="true"/>
-          <speciesReference species="MAM02993c" stoichiometry="182" constant="true"/>
-          <speciesReference species="MAM03089c" stoichiometry="60" constant="true"/>
-          <speciesReference species="MAM03101c" stoichiometry="98" constant="true"/>
-          <speciesReference species="MAM03135c" stoichiometry="122" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="2673" constant="true"/>
+          <speciesReference species="M_MAM01307c" stoichiometry="134" constant="true"/>
+          <speciesReference species="M_MAM01365c" stoichiometry="134" constant="true"/>
+          <speciesReference species="M_MAM01369c" stoichiometry="138" constant="true"/>
+          <speciesReference species="M_MAM01370c" stoichiometry="176" constant="true"/>
+          <speciesReference species="M_MAM01628c" stoichiometry="48" constant="true"/>
+          <speciesReference species="M_MAM01974c" stoichiometry="186" constant="true"/>
+          <speciesReference species="M_MAM01975c" stoichiometry="110" constant="true"/>
+          <speciesReference species="M_MAM01986c" stoichiometry="262" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="2747" constant="true"/>
+          <speciesReference species="M_MAM02125c" stoichiometry="62" constant="true"/>
+          <speciesReference species="M_MAM02184c" stoichiometry="104" constant="true"/>
+          <speciesReference species="M_MAM02360c" stoichiometry="166" constant="true"/>
+          <speciesReference species="M_MAM02426c" stoichiometry="154" constant="true"/>
+          <speciesReference species="M_MAM02471c" stoichiometry="48" constant="true"/>
+          <speciesReference species="M_MAM02724c" stoichiometry="98" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="2673" constant="true"/>
+          <speciesReference species="M_MAM02770c" stoichiometry="114" constant="true"/>
+          <speciesReference species="M_MAM02896c" stoichiometry="278" constant="true"/>
+          <speciesReference species="M_MAM02993c" stoichiometry="182" constant="true"/>
+          <speciesReference species="M_MAM03089c" stoichiometry="60" constant="true"/>
+          <speciesReference species="M_MAM03101c" stoichiometry="98" constant="true"/>
+          <speciesReference species="M_MAM03135c" stoichiometry="122" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05272" sboTerm="SBO:0000176" id="MAR05272" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05272" sboTerm="SBO:0000176" id="R_MAR05272" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -171148,7 +171188,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05272">
+            <rdf:Description rdf:about="#R_MAR05272">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/r1349"/>
@@ -171158,34 +171198,34 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371l" stoichiometry="2673" constant="true"/>
-          <speciesReference species="MAM01827l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040l" stoichiometry="5346" constant="true"/>
+          <speciesReference species="M_MAM01371l" stoichiometry="2673" constant="true"/>
+          <speciesReference species="M_MAM01827l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="5346" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285l" stoichiometry="2673" constant="true"/>
-          <speciesReference species="MAM01307l" stoichiometry="134" constant="true"/>
-          <speciesReference species="MAM01365l" stoichiometry="134" constant="true"/>
-          <speciesReference species="MAM01369l" stoichiometry="138" constant="true"/>
-          <speciesReference species="MAM01370l" stoichiometry="176" constant="true"/>
-          <speciesReference species="MAM01628l" stoichiometry="48" constant="true"/>
-          <speciesReference species="MAM01974l" stoichiometry="186" constant="true"/>
-          <speciesReference species="MAM01975l" stoichiometry="110" constant="true"/>
-          <speciesReference species="MAM01986l" stoichiometry="262" constant="true"/>
-          <speciesReference species="MAM02039l" stoichiometry="2747" constant="true"/>
-          <speciesReference species="MAM02125l" stoichiometry="62" constant="true"/>
-          <speciesReference species="MAM02184l" stoichiometry="104" constant="true"/>
-          <speciesReference species="MAM02360l" stoichiometry="166" constant="true"/>
-          <speciesReference species="MAM02426l" stoichiometry="154" constant="true"/>
-          <speciesReference species="MAM02471l" stoichiometry="48" constant="true"/>
-          <speciesReference species="MAM02724l" stoichiometry="98" constant="true"/>
-          <speciesReference species="MAM02751l" stoichiometry="2673" constant="true"/>
-          <speciesReference species="MAM02770l" stoichiometry="114" constant="true"/>
-          <speciesReference species="MAM02896l" stoichiometry="278" constant="true"/>
-          <speciesReference species="MAM02993l" stoichiometry="182" constant="true"/>
-          <speciesReference species="MAM03089l" stoichiometry="60" constant="true"/>
-          <speciesReference species="MAM03101l" stoichiometry="98" constant="true"/>
-          <speciesReference species="MAM03135l" stoichiometry="122" constant="true"/>
+          <speciesReference species="M_MAM01285l" stoichiometry="2673" constant="true"/>
+          <speciesReference species="M_MAM01307l" stoichiometry="134" constant="true"/>
+          <speciesReference species="M_MAM01365l" stoichiometry="134" constant="true"/>
+          <speciesReference species="M_MAM01369l" stoichiometry="138" constant="true"/>
+          <speciesReference species="M_MAM01370l" stoichiometry="176" constant="true"/>
+          <speciesReference species="M_MAM01628l" stoichiometry="48" constant="true"/>
+          <speciesReference species="M_MAM01974l" stoichiometry="186" constant="true"/>
+          <speciesReference species="M_MAM01975l" stoichiometry="110" constant="true"/>
+          <speciesReference species="M_MAM01986l" stoichiometry="262" constant="true"/>
+          <speciesReference species="M_MAM02039l" stoichiometry="2747" constant="true"/>
+          <speciesReference species="M_MAM02125l" stoichiometry="62" constant="true"/>
+          <speciesReference species="M_MAM02184l" stoichiometry="104" constant="true"/>
+          <speciesReference species="M_MAM02360l" stoichiometry="166" constant="true"/>
+          <speciesReference species="M_MAM02426l" stoichiometry="154" constant="true"/>
+          <speciesReference species="M_MAM02471l" stoichiometry="48" constant="true"/>
+          <speciesReference species="M_MAM02724l" stoichiometry="98" constant="true"/>
+          <speciesReference species="M_MAM02751l" stoichiometry="2673" constant="true"/>
+          <speciesReference species="M_MAM02770l" stoichiometry="114" constant="true"/>
+          <speciesReference species="M_MAM02896l" stoichiometry="278" constant="true"/>
+          <speciesReference species="M_MAM02993l" stoichiometry="182" constant="true"/>
+          <speciesReference species="M_MAM03089l" stoichiometry="60" constant="true"/>
+          <speciesReference species="M_MAM03101l" stoichiometry="98" constant="true"/>
+          <speciesReference species="M_MAM03135l" stoichiometry="122" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -171199,7 +171239,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05273" sboTerm="SBO:0000176" id="MAR05273" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05273" sboTerm="SBO:0000176" id="R_MAR05273" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -171207,7 +171247,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05273">
+            <rdf:Description rdf:about="#R_MAR05273">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/r1350"/>
@@ -171217,37 +171257,37 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="405" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="810" constant="true"/>
-          <speciesReference species="MAM02044c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="405" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="810" constant="true"/>
+          <speciesReference species="M_MAM02044c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="405" constant="true"/>
-          <speciesReference species="MAM01307c" stoichiometry="30" constant="true"/>
-          <speciesReference species="MAM01365c" stoichiometry="9" constant="true"/>
-          <speciesReference species="MAM01369c" stoichiometry="21" constant="true"/>
-          <speciesReference species="MAM01370c" stoichiometry="25" constant="true"/>
-          <speciesReference species="MAM01628c" stoichiometry="12" constant="true"/>
-          <speciesReference species="MAM01974c" stoichiometry="25" constant="true"/>
-          <speciesReference species="MAM01975c" stoichiometry="17" constant="true"/>
-          <speciesReference species="MAM01986c" stoichiometry="31" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="411" constant="true"/>
-          <speciesReference species="MAM02125c" stoichiometry="13" constant="true"/>
-          <speciesReference species="MAM02184c" stoichiometry="18" constant="true"/>
-          <speciesReference species="MAM02360c" stoichiometry="31" constant="true"/>
-          <speciesReference species="MAM02426c" stoichiometry="35" constant="true"/>
-          <speciesReference species="MAM02471c" stoichiometry="5" constant="true"/>
-          <speciesReference species="MAM02724c" stoichiometry="8" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="405" constant="true"/>
-          <speciesReference species="MAM02770c" stoichiometry="21" constant="true"/>
-          <speciesReference species="MAM02896c" stoichiometry="18" constant="true"/>
-          <speciesReference species="MAM02993c" stoichiometry="22" constant="true"/>
-          <speciesReference species="MAM03089c" stoichiometry="8" constant="true"/>
-          <speciesReference species="MAM03101c" stoichiometry="21" constant="true"/>
-          <speciesReference species="MAM03135c" stoichiometry="36" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="405" constant="true"/>
+          <speciesReference species="M_MAM01307c" stoichiometry="30" constant="true"/>
+          <speciesReference species="M_MAM01365c" stoichiometry="9" constant="true"/>
+          <speciesReference species="M_MAM01369c" stoichiometry="21" constant="true"/>
+          <speciesReference species="M_MAM01370c" stoichiometry="25" constant="true"/>
+          <speciesReference species="M_MAM01628c" stoichiometry="12" constant="true"/>
+          <speciesReference species="M_MAM01974c" stoichiometry="25" constant="true"/>
+          <speciesReference species="M_MAM01975c" stoichiometry="17" constant="true"/>
+          <speciesReference species="M_MAM01986c" stoichiometry="31" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="411" constant="true"/>
+          <speciesReference species="M_MAM02125c" stoichiometry="13" constant="true"/>
+          <speciesReference species="M_MAM02184c" stoichiometry="18" constant="true"/>
+          <speciesReference species="M_MAM02360c" stoichiometry="31" constant="true"/>
+          <speciesReference species="M_MAM02426c" stoichiometry="35" constant="true"/>
+          <speciesReference species="M_MAM02471c" stoichiometry="5" constant="true"/>
+          <speciesReference species="M_MAM02724c" stoichiometry="8" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="405" constant="true"/>
+          <speciesReference species="M_MAM02770c" stoichiometry="21" constant="true"/>
+          <speciesReference species="M_MAM02896c" stoichiometry="18" constant="true"/>
+          <speciesReference species="M_MAM02993c" stoichiometry="22" constant="true"/>
+          <speciesReference species="M_MAM03089c" stoichiometry="8" constant="true"/>
+          <speciesReference species="M_MAM03101c" stoichiometry="21" constant="true"/>
+          <speciesReference species="M_MAM03135c" stoichiometry="36" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05274" sboTerm="SBO:0000176" id="MAR05274" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05274" sboTerm="SBO:0000176" id="R_MAR05274" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -171255,7 +171295,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05274">
+            <rdf:Description rdf:about="#R_MAR05274">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/r1351"/>
@@ -171265,34 +171305,34 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371l" stoichiometry="405" constant="true"/>
-          <speciesReference species="MAM02040l" stoichiometry="810" constant="true"/>
-          <speciesReference species="MAM02044l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371l" stoichiometry="405" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="810" constant="true"/>
+          <speciesReference species="M_MAM02044l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285l" stoichiometry="405" constant="true"/>
-          <speciesReference species="MAM01307l" stoichiometry="30" constant="true"/>
-          <speciesReference species="MAM01365l" stoichiometry="9" constant="true"/>
-          <speciesReference species="MAM01369l" stoichiometry="21" constant="true"/>
-          <speciesReference species="MAM01370l" stoichiometry="25" constant="true"/>
-          <speciesReference species="MAM01628l" stoichiometry="12" constant="true"/>
-          <speciesReference species="MAM01974l" stoichiometry="25" constant="true"/>
-          <speciesReference species="MAM01975l" stoichiometry="17" constant="true"/>
-          <speciesReference species="MAM01986l" stoichiometry="31" constant="true"/>
-          <speciesReference species="MAM02039l" stoichiometry="411" constant="true"/>
-          <speciesReference species="MAM02125l" stoichiometry="13" constant="true"/>
-          <speciesReference species="MAM02184l" stoichiometry="18" constant="true"/>
-          <speciesReference species="MAM02360l" stoichiometry="31" constant="true"/>
-          <speciesReference species="MAM02426l" stoichiometry="35" constant="true"/>
-          <speciesReference species="MAM02471l" stoichiometry="5" constant="true"/>
-          <speciesReference species="MAM02724l" stoichiometry="8" constant="true"/>
-          <speciesReference species="MAM02751l" stoichiometry="405" constant="true"/>
-          <speciesReference species="MAM02770l" stoichiometry="21" constant="true"/>
-          <speciesReference species="MAM02896l" stoichiometry="18" constant="true"/>
-          <speciesReference species="MAM02993l" stoichiometry="22" constant="true"/>
-          <speciesReference species="MAM03089l" stoichiometry="8" constant="true"/>
-          <speciesReference species="MAM03101l" stoichiometry="21" constant="true"/>
-          <speciesReference species="MAM03135l" stoichiometry="36" constant="true"/>
+          <speciesReference species="M_MAM01285l" stoichiometry="405" constant="true"/>
+          <speciesReference species="M_MAM01307l" stoichiometry="30" constant="true"/>
+          <speciesReference species="M_MAM01365l" stoichiometry="9" constant="true"/>
+          <speciesReference species="M_MAM01369l" stoichiometry="21" constant="true"/>
+          <speciesReference species="M_MAM01370l" stoichiometry="25" constant="true"/>
+          <speciesReference species="M_MAM01628l" stoichiometry="12" constant="true"/>
+          <speciesReference species="M_MAM01974l" stoichiometry="25" constant="true"/>
+          <speciesReference species="M_MAM01975l" stoichiometry="17" constant="true"/>
+          <speciesReference species="M_MAM01986l" stoichiometry="31" constant="true"/>
+          <speciesReference species="M_MAM02039l" stoichiometry="411" constant="true"/>
+          <speciesReference species="M_MAM02125l" stoichiometry="13" constant="true"/>
+          <speciesReference species="M_MAM02184l" stoichiometry="18" constant="true"/>
+          <speciesReference species="M_MAM02360l" stoichiometry="31" constant="true"/>
+          <speciesReference species="M_MAM02426l" stoichiometry="35" constant="true"/>
+          <speciesReference species="M_MAM02471l" stoichiometry="5" constant="true"/>
+          <speciesReference species="M_MAM02724l" stoichiometry="8" constant="true"/>
+          <speciesReference species="M_MAM02751l" stoichiometry="405" constant="true"/>
+          <speciesReference species="M_MAM02770l" stoichiometry="21" constant="true"/>
+          <speciesReference species="M_MAM02896l" stoichiometry="18" constant="true"/>
+          <speciesReference species="M_MAM02993l" stoichiometry="22" constant="true"/>
+          <speciesReference species="M_MAM03089l" stoichiometry="8" constant="true"/>
+          <speciesReference species="M_MAM03101l" stoichiometry="21" constant="true"/>
+          <speciesReference species="M_MAM03135l" stoichiometry="36" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -171306,7 +171346,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05275" sboTerm="SBO:0000176" id="MAR05275" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05275" sboTerm="SBO:0000176" id="R_MAR05275" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -171314,7 +171354,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05275">
+            <rdf:Description rdf:about="#R_MAR05275">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/r1352"/>
@@ -171324,37 +171364,37 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="809" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1618" constant="true"/>
-          <speciesReference species="MAM02753c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="809" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1618" constant="true"/>
+          <speciesReference species="M_MAM02753c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="809" constant="true"/>
-          <speciesReference species="MAM01307c" stoichiometry="37" constant="true"/>
-          <speciesReference species="MAM01365c" stoichiometry="42" constant="true"/>
-          <speciesReference species="MAM01369c" stoichiometry="40" constant="true"/>
-          <speciesReference species="MAM01370c" stoichiometry="36" constant="true"/>
-          <speciesReference species="MAM01628c" stoichiometry="48" constant="true"/>
-          <speciesReference species="MAM01974c" stoichiometry="56" constant="true"/>
-          <speciesReference species="MAM01975c" stoichiometry="31" constant="true"/>
-          <speciesReference species="MAM01986c" stoichiometry="62" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="810" constant="true"/>
-          <speciesReference species="MAM02125c" stoichiometry="24" constant="true"/>
-          <speciesReference species="MAM02184c" stoichiometry="22" constant="true"/>
-          <speciesReference species="MAM02360c" stoichiometry="48" constant="true"/>
-          <speciesReference species="MAM02426c" stoichiometry="49" constant="true"/>
-          <speciesReference species="MAM02471c" stoichiometry="11" constant="true"/>
-          <speciesReference species="MAM02724c" stoichiometry="21" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="809" constant="true"/>
-          <speciesReference species="MAM02770c" stoichiometry="69" constant="true"/>
-          <speciesReference species="MAM02896c" stoichiometry="56" constant="true"/>
-          <speciesReference species="MAM02993c" stoichiometry="61" constant="true"/>
-          <speciesReference species="MAM03089c" stoichiometry="19" constant="true"/>
-          <speciesReference species="MAM03101c" stoichiometry="30" constant="true"/>
-          <speciesReference species="MAM03135c" stoichiometry="48" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="809" constant="true"/>
+          <speciesReference species="M_MAM01307c" stoichiometry="37" constant="true"/>
+          <speciesReference species="M_MAM01365c" stoichiometry="42" constant="true"/>
+          <speciesReference species="M_MAM01369c" stoichiometry="40" constant="true"/>
+          <speciesReference species="M_MAM01370c" stoichiometry="36" constant="true"/>
+          <speciesReference species="M_MAM01628c" stoichiometry="48" constant="true"/>
+          <speciesReference species="M_MAM01974c" stoichiometry="56" constant="true"/>
+          <speciesReference species="M_MAM01975c" stoichiometry="31" constant="true"/>
+          <speciesReference species="M_MAM01986c" stoichiometry="62" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="810" constant="true"/>
+          <speciesReference species="M_MAM02125c" stoichiometry="24" constant="true"/>
+          <speciesReference species="M_MAM02184c" stoichiometry="22" constant="true"/>
+          <speciesReference species="M_MAM02360c" stoichiometry="48" constant="true"/>
+          <speciesReference species="M_MAM02426c" stoichiometry="49" constant="true"/>
+          <speciesReference species="M_MAM02471c" stoichiometry="11" constant="true"/>
+          <speciesReference species="M_MAM02724c" stoichiometry="21" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="809" constant="true"/>
+          <speciesReference species="M_MAM02770c" stoichiometry="69" constant="true"/>
+          <speciesReference species="M_MAM02896c" stoichiometry="56" constant="true"/>
+          <speciesReference species="M_MAM02993c" stoichiometry="61" constant="true"/>
+          <speciesReference species="M_MAM03089c" stoichiometry="19" constant="true"/>
+          <speciesReference species="M_MAM03101c" stoichiometry="30" constant="true"/>
+          <speciesReference species="M_MAM03135c" stoichiometry="48" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05276" sboTerm="SBO:0000176" id="MAR05276" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05276" sboTerm="SBO:0000176" id="R_MAR05276" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -171362,7 +171402,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05276">
+            <rdf:Description rdf:about="#R_MAR05276">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/r1353"/>
@@ -171372,34 +171412,34 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371l" stoichiometry="809" constant="true"/>
-          <speciesReference species="MAM02040l" stoichiometry="1618" constant="true"/>
-          <speciesReference species="MAM02753l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371l" stoichiometry="809" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1618" constant="true"/>
+          <speciesReference species="M_MAM02753l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285l" stoichiometry="809" constant="true"/>
-          <speciesReference species="MAM01307l" stoichiometry="37" constant="true"/>
-          <speciesReference species="MAM01365l" stoichiometry="42" constant="true"/>
-          <speciesReference species="MAM01369l" stoichiometry="40" constant="true"/>
-          <speciesReference species="MAM01370l" stoichiometry="36" constant="true"/>
-          <speciesReference species="MAM01628l" stoichiometry="48" constant="true"/>
-          <speciesReference species="MAM01974l" stoichiometry="56" constant="true"/>
-          <speciesReference species="MAM01975l" stoichiometry="31" constant="true"/>
-          <speciesReference species="MAM01986l" stoichiometry="62" constant="true"/>
-          <speciesReference species="MAM02039l" stoichiometry="810" constant="true"/>
-          <speciesReference species="MAM02125l" stoichiometry="24" constant="true"/>
-          <speciesReference species="MAM02184l" stoichiometry="22" constant="true"/>
-          <speciesReference species="MAM02360l" stoichiometry="48" constant="true"/>
-          <speciesReference species="MAM02426l" stoichiometry="49" constant="true"/>
-          <speciesReference species="MAM02471l" stoichiometry="11" constant="true"/>
-          <speciesReference species="MAM02724l" stoichiometry="21" constant="true"/>
-          <speciesReference species="MAM02751l" stoichiometry="809" constant="true"/>
-          <speciesReference species="MAM02770l" stoichiometry="69" constant="true"/>
-          <speciesReference species="MAM02896l" stoichiometry="56" constant="true"/>
-          <speciesReference species="MAM02993l" stoichiometry="61" constant="true"/>
-          <speciesReference species="MAM03089l" stoichiometry="19" constant="true"/>
-          <speciesReference species="MAM03101l" stoichiometry="30" constant="true"/>
-          <speciesReference species="MAM03135l" stoichiometry="48" constant="true"/>
+          <speciesReference species="M_MAM01285l" stoichiometry="809" constant="true"/>
+          <speciesReference species="M_MAM01307l" stoichiometry="37" constant="true"/>
+          <speciesReference species="M_MAM01365l" stoichiometry="42" constant="true"/>
+          <speciesReference species="M_MAM01369l" stoichiometry="40" constant="true"/>
+          <speciesReference species="M_MAM01370l" stoichiometry="36" constant="true"/>
+          <speciesReference species="M_MAM01628l" stoichiometry="48" constant="true"/>
+          <speciesReference species="M_MAM01974l" stoichiometry="56" constant="true"/>
+          <speciesReference species="M_MAM01975l" stoichiometry="31" constant="true"/>
+          <speciesReference species="M_MAM01986l" stoichiometry="62" constant="true"/>
+          <speciesReference species="M_MAM02039l" stoichiometry="810" constant="true"/>
+          <speciesReference species="M_MAM02125l" stoichiometry="24" constant="true"/>
+          <speciesReference species="M_MAM02184l" stoichiometry="22" constant="true"/>
+          <speciesReference species="M_MAM02360l" stoichiometry="48" constant="true"/>
+          <speciesReference species="M_MAM02426l" stoichiometry="49" constant="true"/>
+          <speciesReference species="M_MAM02471l" stoichiometry="11" constant="true"/>
+          <speciesReference species="M_MAM02724l" stoichiometry="21" constant="true"/>
+          <speciesReference species="M_MAM02751l" stoichiometry="809" constant="true"/>
+          <speciesReference species="M_MAM02770l" stoichiometry="69" constant="true"/>
+          <speciesReference species="M_MAM02896l" stoichiometry="56" constant="true"/>
+          <speciesReference species="M_MAM02993l" stoichiometry="61" constant="true"/>
+          <speciesReference species="M_MAM03089l" stoichiometry="19" constant="true"/>
+          <speciesReference species="M_MAM03101l" stoichiometry="30" constant="true"/>
+          <speciesReference species="M_MAM03135l" stoichiometry="48" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -171413,7 +171453,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05277" sboTerm="SBO:0000176" id="MAR05277" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05277" sboTerm="SBO:0000176" id="R_MAR05277" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -171421,7 +171461,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05277">
+            <rdf:Description rdf:about="#R_MAR05277">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/r1354"/>
@@ -171431,37 +171471,37 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="621" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1242" constant="true"/>
-          <speciesReference species="MAM02802c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="621" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1242" constant="true"/>
+          <speciesReference species="M_MAM02802c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="621" constant="true"/>
-          <speciesReference species="MAM01307c" stoichiometry="42" constant="true"/>
-          <speciesReference species="MAM01365c" stoichiometry="44" constant="true"/>
-          <speciesReference species="MAM01369c" stoichiometry="25" constant="true"/>
-          <speciesReference species="MAM01370c" stoichiometry="35" constant="true"/>
-          <speciesReference species="MAM01628c" stoichiometry="26" constant="true"/>
-          <speciesReference species="MAM01974c" stoichiometry="51" constant="true"/>
-          <speciesReference species="MAM01975c" stoichiometry="26" constant="true"/>
-          <speciesReference species="MAM01986c" stoichiometry="49" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="634" constant="true"/>
-          <speciesReference species="MAM02125c" stoichiometry="13" constant="true"/>
-          <speciesReference species="MAM02184c" stoichiometry="22" constant="true"/>
-          <speciesReference species="MAM02360c" stoichiometry="51" constant="true"/>
-          <speciesReference species="MAM02426c" stoichiometry="29" constant="true"/>
-          <speciesReference species="MAM02471c" stoichiometry="9" constant="true"/>
-          <speciesReference species="MAM02724c" stoichiometry="21" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="621" constant="true"/>
-          <speciesReference species="MAM02770c" stoichiometry="33" constant="true"/>
-          <speciesReference species="MAM02896c" stoichiometry="38" constant="true"/>
-          <speciesReference species="MAM02993c" stoichiometry="36" constant="true"/>
-          <speciesReference species="MAM03089c" stoichiometry="14" constant="true"/>
-          <speciesReference species="MAM03101c" stoichiometry="21" constant="true"/>
-          <speciesReference species="MAM03135c" stoichiometry="37" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="621" constant="true"/>
+          <speciesReference species="M_MAM01307c" stoichiometry="42" constant="true"/>
+          <speciesReference species="M_MAM01365c" stoichiometry="44" constant="true"/>
+          <speciesReference species="M_MAM01369c" stoichiometry="25" constant="true"/>
+          <speciesReference species="M_MAM01370c" stoichiometry="35" constant="true"/>
+          <speciesReference species="M_MAM01628c" stoichiometry="26" constant="true"/>
+          <speciesReference species="M_MAM01974c" stoichiometry="51" constant="true"/>
+          <speciesReference species="M_MAM01975c" stoichiometry="26" constant="true"/>
+          <speciesReference species="M_MAM01986c" stoichiometry="49" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="634" constant="true"/>
+          <speciesReference species="M_MAM02125c" stoichiometry="13" constant="true"/>
+          <speciesReference species="M_MAM02184c" stoichiometry="22" constant="true"/>
+          <speciesReference species="M_MAM02360c" stoichiometry="51" constant="true"/>
+          <speciesReference species="M_MAM02426c" stoichiometry="29" constant="true"/>
+          <speciesReference species="M_MAM02471c" stoichiometry="9" constant="true"/>
+          <speciesReference species="M_MAM02724c" stoichiometry="21" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="621" constant="true"/>
+          <speciesReference species="M_MAM02770c" stoichiometry="33" constant="true"/>
+          <speciesReference species="M_MAM02896c" stoichiometry="38" constant="true"/>
+          <speciesReference species="M_MAM02993c" stoichiometry="36" constant="true"/>
+          <speciesReference species="M_MAM03089c" stoichiometry="14" constant="true"/>
+          <speciesReference species="M_MAM03101c" stoichiometry="21" constant="true"/>
+          <speciesReference species="M_MAM03135c" stoichiometry="37" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05278" sboTerm="SBO:0000176" id="MAR05278" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05278" sboTerm="SBO:0000176" id="R_MAR05278" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -171469,7 +171509,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05278">
+            <rdf:Description rdf:about="#R_MAR05278">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/r1355"/>
@@ -171479,34 +171519,34 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371l" stoichiometry="621" constant="true"/>
-          <speciesReference species="MAM02040l" stoichiometry="1242" constant="true"/>
-          <speciesReference species="MAM02802l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371l" stoichiometry="621" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1242" constant="true"/>
+          <speciesReference species="M_MAM02802l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285l" stoichiometry="621" constant="true"/>
-          <speciesReference species="MAM01307l" stoichiometry="42" constant="true"/>
-          <speciesReference species="MAM01365l" stoichiometry="44" constant="true"/>
-          <speciesReference species="MAM01369l" stoichiometry="25" constant="true"/>
-          <speciesReference species="MAM01370l" stoichiometry="35" constant="true"/>
-          <speciesReference species="MAM01628l" stoichiometry="26" constant="true"/>
-          <speciesReference species="MAM01974l" stoichiometry="51" constant="true"/>
-          <speciesReference species="MAM01975l" stoichiometry="26" constant="true"/>
-          <speciesReference species="MAM01986l" stoichiometry="49" constant="true"/>
-          <speciesReference species="MAM02039l" stoichiometry="634" constant="true"/>
-          <speciesReference species="MAM02125l" stoichiometry="13" constant="true"/>
-          <speciesReference species="MAM02184l" stoichiometry="22" constant="true"/>
-          <speciesReference species="MAM02360l" stoichiometry="51" constant="true"/>
-          <speciesReference species="MAM02426l" stoichiometry="29" constant="true"/>
-          <speciesReference species="MAM02471l" stoichiometry="9" constant="true"/>
-          <speciesReference species="MAM02724l" stoichiometry="21" constant="true"/>
-          <speciesReference species="MAM02751l" stoichiometry="621" constant="true"/>
-          <speciesReference species="MAM02770l" stoichiometry="33" constant="true"/>
-          <speciesReference species="MAM02896l" stoichiometry="38" constant="true"/>
-          <speciesReference species="MAM02993l" stoichiometry="36" constant="true"/>
-          <speciesReference species="MAM03089l" stoichiometry="14" constant="true"/>
-          <speciesReference species="MAM03101l" stoichiometry="21" constant="true"/>
-          <speciesReference species="MAM03135l" stoichiometry="37" constant="true"/>
+          <speciesReference species="M_MAM01285l" stoichiometry="621" constant="true"/>
+          <speciesReference species="M_MAM01307l" stoichiometry="42" constant="true"/>
+          <speciesReference species="M_MAM01365l" stoichiometry="44" constant="true"/>
+          <speciesReference species="M_MAM01369l" stoichiometry="25" constant="true"/>
+          <speciesReference species="M_MAM01370l" stoichiometry="35" constant="true"/>
+          <speciesReference species="M_MAM01628l" stoichiometry="26" constant="true"/>
+          <speciesReference species="M_MAM01974l" stoichiometry="51" constant="true"/>
+          <speciesReference species="M_MAM01975l" stoichiometry="26" constant="true"/>
+          <speciesReference species="M_MAM01986l" stoichiometry="49" constant="true"/>
+          <speciesReference species="M_MAM02039l" stoichiometry="634" constant="true"/>
+          <speciesReference species="M_MAM02125l" stoichiometry="13" constant="true"/>
+          <speciesReference species="M_MAM02184l" stoichiometry="22" constant="true"/>
+          <speciesReference species="M_MAM02360l" stoichiometry="51" constant="true"/>
+          <speciesReference species="M_MAM02426l" stoichiometry="29" constant="true"/>
+          <speciesReference species="M_MAM02471l" stoichiometry="9" constant="true"/>
+          <speciesReference species="M_MAM02724l" stoichiometry="21" constant="true"/>
+          <speciesReference species="M_MAM02751l" stoichiometry="621" constant="true"/>
+          <speciesReference species="M_MAM02770l" stoichiometry="33" constant="true"/>
+          <speciesReference species="M_MAM02896l" stoichiometry="38" constant="true"/>
+          <speciesReference species="M_MAM02993l" stoichiometry="36" constant="true"/>
+          <speciesReference species="M_MAM03089l" stoichiometry="14" constant="true"/>
+          <speciesReference species="M_MAM03101l" stoichiometry="21" constant="true"/>
+          <speciesReference species="M_MAM03135l" stoichiometry="37" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -171520,7 +171560,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05279" sboTerm="SBO:0000176" id="MAR05279" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05279" sboTerm="SBO:0000176" id="R_MAR05279" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -171528,7 +171568,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05279">
+            <rdf:Description rdf:about="#R_MAR05279">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/r1356"/>
@@ -171538,37 +171578,37 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00186c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371c" stoichiometry="697" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1394" constant="true"/>
+          <speciesReference species="M_MAM00186c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="697" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1394" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="697" constant="true"/>
-          <speciesReference species="MAM01307c" stoichiometry="61" constant="true"/>
-          <speciesReference species="MAM01365c" stoichiometry="27" constant="true"/>
-          <speciesReference species="MAM01369c" stoichiometry="34" constant="true"/>
-          <speciesReference species="MAM01370c" stoichiometry="45" constant="true"/>
-          <speciesReference species="MAM01628c" stoichiometry="40" constant="true"/>
-          <speciesReference species="MAM01974c" stoichiometry="42" constant="true"/>
-          <speciesReference species="MAM01975c" stoichiometry="17" constant="true"/>
-          <speciesReference species="MAM01986c" stoichiometry="52" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="699" constant="true"/>
-          <speciesReference species="MAM02125c" stoichiometry="19" constant="true"/>
-          <speciesReference species="MAM02184c" stoichiometry="15" constant="true"/>
-          <speciesReference species="MAM02360c" stoichiometry="65" constant="true"/>
-          <speciesReference species="MAM02426c" stoichiometry="58" constant="true"/>
-          <speciesReference species="MAM02471c" stoichiometry="10" constant="true"/>
-          <speciesReference species="MAM02724c" stoichiometry="28" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="697" constant="true"/>
-          <speciesReference species="MAM02770c" stoichiometry="32" constant="true"/>
-          <speciesReference species="MAM02896c" stoichiometry="41" constant="true"/>
-          <speciesReference species="MAM02993c" stoichiometry="30" constant="true"/>
-          <speciesReference species="MAM03089c" stoichiometry="8" constant="true"/>
-          <speciesReference species="MAM03101c" stoichiometry="26" constant="true"/>
-          <speciesReference species="MAM03135c" stoichiometry="48" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="697" constant="true"/>
+          <speciesReference species="M_MAM01307c" stoichiometry="61" constant="true"/>
+          <speciesReference species="M_MAM01365c" stoichiometry="27" constant="true"/>
+          <speciesReference species="M_MAM01369c" stoichiometry="34" constant="true"/>
+          <speciesReference species="M_MAM01370c" stoichiometry="45" constant="true"/>
+          <speciesReference species="M_MAM01628c" stoichiometry="40" constant="true"/>
+          <speciesReference species="M_MAM01974c" stoichiometry="42" constant="true"/>
+          <speciesReference species="M_MAM01975c" stoichiometry="17" constant="true"/>
+          <speciesReference species="M_MAM01986c" stoichiometry="52" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="699" constant="true"/>
+          <speciesReference species="M_MAM02125c" stoichiometry="19" constant="true"/>
+          <speciesReference species="M_MAM02184c" stoichiometry="15" constant="true"/>
+          <speciesReference species="M_MAM02360c" stoichiometry="65" constant="true"/>
+          <speciesReference species="M_MAM02426c" stoichiometry="58" constant="true"/>
+          <speciesReference species="M_MAM02471c" stoichiometry="10" constant="true"/>
+          <speciesReference species="M_MAM02724c" stoichiometry="28" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="697" constant="true"/>
+          <speciesReference species="M_MAM02770c" stoichiometry="32" constant="true"/>
+          <speciesReference species="M_MAM02896c" stoichiometry="41" constant="true"/>
+          <speciesReference species="M_MAM02993c" stoichiometry="30" constant="true"/>
+          <speciesReference species="M_MAM03089c" stoichiometry="8" constant="true"/>
+          <speciesReference species="M_MAM03101c" stoichiometry="26" constant="true"/>
+          <speciesReference species="M_MAM03135c" stoichiometry="48" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05280" sboTerm="SBO:0000176" id="MAR05280" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05280" sboTerm="SBO:0000176" id="R_MAR05280" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -171576,7 +171616,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05280">
+            <rdf:Description rdf:about="#R_MAR05280">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/r1357"/>
@@ -171586,34 +171626,34 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00186l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371l" stoichiometry="697" constant="true"/>
-          <speciesReference species="MAM02040l" stoichiometry="1394" constant="true"/>
+          <speciesReference species="M_MAM00186l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371l" stoichiometry="697" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1394" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285l" stoichiometry="697" constant="true"/>
-          <speciesReference species="MAM01307l" stoichiometry="61" constant="true"/>
-          <speciesReference species="MAM01365l" stoichiometry="27" constant="true"/>
-          <speciesReference species="MAM01369l" stoichiometry="34" constant="true"/>
-          <speciesReference species="MAM01370l" stoichiometry="45" constant="true"/>
-          <speciesReference species="MAM01628l" stoichiometry="40" constant="true"/>
-          <speciesReference species="MAM01974l" stoichiometry="42" constant="true"/>
-          <speciesReference species="MAM01975l" stoichiometry="17" constant="true"/>
-          <speciesReference species="MAM01986l" stoichiometry="52" constant="true"/>
-          <speciesReference species="MAM02039l" stoichiometry="699" constant="true"/>
-          <speciesReference species="MAM02125l" stoichiometry="19" constant="true"/>
-          <speciesReference species="MAM02184l" stoichiometry="15" constant="true"/>
-          <speciesReference species="MAM02360l" stoichiometry="65" constant="true"/>
-          <speciesReference species="MAM02426l" stoichiometry="58" constant="true"/>
-          <speciesReference species="MAM02471l" stoichiometry="10" constant="true"/>
-          <speciesReference species="MAM02724l" stoichiometry="28" constant="true"/>
-          <speciesReference species="MAM02751l" stoichiometry="697" constant="true"/>
-          <speciesReference species="MAM02770l" stoichiometry="32" constant="true"/>
-          <speciesReference species="MAM02896l" stoichiometry="41" constant="true"/>
-          <speciesReference species="MAM02993l" stoichiometry="30" constant="true"/>
-          <speciesReference species="MAM03089l" stoichiometry="8" constant="true"/>
-          <speciesReference species="MAM03101l" stoichiometry="26" constant="true"/>
-          <speciesReference species="MAM03135l" stoichiometry="48" constant="true"/>
+          <speciesReference species="M_MAM01285l" stoichiometry="697" constant="true"/>
+          <speciesReference species="M_MAM01307l" stoichiometry="61" constant="true"/>
+          <speciesReference species="M_MAM01365l" stoichiometry="27" constant="true"/>
+          <speciesReference species="M_MAM01369l" stoichiometry="34" constant="true"/>
+          <speciesReference species="M_MAM01370l" stoichiometry="45" constant="true"/>
+          <speciesReference species="M_MAM01628l" stoichiometry="40" constant="true"/>
+          <speciesReference species="M_MAM01974l" stoichiometry="42" constant="true"/>
+          <speciesReference species="M_MAM01975l" stoichiometry="17" constant="true"/>
+          <speciesReference species="M_MAM01986l" stoichiometry="52" constant="true"/>
+          <speciesReference species="M_MAM02039l" stoichiometry="699" constant="true"/>
+          <speciesReference species="M_MAM02125l" stoichiometry="19" constant="true"/>
+          <speciesReference species="M_MAM02184l" stoichiometry="15" constant="true"/>
+          <speciesReference species="M_MAM02360l" stoichiometry="65" constant="true"/>
+          <speciesReference species="M_MAM02426l" stoichiometry="58" constant="true"/>
+          <speciesReference species="M_MAM02471l" stoichiometry="10" constant="true"/>
+          <speciesReference species="M_MAM02724l" stoichiometry="28" constant="true"/>
+          <speciesReference species="M_MAM02751l" stoichiometry="697" constant="true"/>
+          <speciesReference species="M_MAM02770l" stoichiometry="32" constant="true"/>
+          <speciesReference species="M_MAM02896l" stoichiometry="41" constant="true"/>
+          <speciesReference species="M_MAM02993l" stoichiometry="30" constant="true"/>
+          <speciesReference species="M_MAM03089l" stoichiometry="8" constant="true"/>
+          <speciesReference species="M_MAM03101l" stoichiometry="26" constant="true"/>
+          <speciesReference species="M_MAM03135l" stoichiometry="48" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -171627,7 +171667,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05281" sboTerm="SBO:0000176" id="MAR05281" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05281" sboTerm="SBO:0000176" id="R_MAR05281" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -171635,7 +171675,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05281">
+            <rdf:Description rdf:about="#R_MAR05281">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/r1346"/>
@@ -171645,37 +171685,37 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01359c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371c" stoichiometry="316" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="632" constant="true"/>
+          <speciesReference species="M_MAM01359c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="316" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="632" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="316" constant="true"/>
-          <speciesReference species="MAM01307c" stoichiometry="39" constant="true"/>
-          <speciesReference species="MAM01365c" stoichiometry="34" constant="true"/>
-          <speciesReference species="MAM01369c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01370c" stoichiometry="11" constant="true"/>
-          <speciesReference species="MAM01628c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM01974c" stoichiometry="40" constant="true"/>
-          <speciesReference species="MAM01975c" stoichiometry="32" constant="true"/>
-          <speciesReference species="MAM01986c" stoichiometry="18" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="320" constant="true"/>
-          <speciesReference species="MAM02125c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02184c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02360c" stoichiometry="41" constant="true"/>
-          <speciesReference species="MAM02426c" stoichiometry="13" constant="true"/>
-          <speciesReference species="MAM02471c" stoichiometry="8" constant="true"/>
-          <speciesReference species="MAM02724c" stoichiometry="4" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="316" constant="true"/>
-          <speciesReference species="MAM02770c" stoichiometry="8" constant="true"/>
-          <speciesReference species="MAM02896c" stoichiometry="14" constant="true"/>
-          <speciesReference species="MAM02993c" stoichiometry="12" constant="true"/>
-          <speciesReference species="MAM03089c" stoichiometry="8" constant="true"/>
-          <speciesReference species="MAM03101c" stoichiometry="4" constant="true"/>
-          <speciesReference species="MAM03135c" stoichiometry="24" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="316" constant="true"/>
+          <speciesReference species="M_MAM01307c" stoichiometry="39" constant="true"/>
+          <speciesReference species="M_MAM01365c" stoichiometry="34" constant="true"/>
+          <speciesReference species="M_MAM01369c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01370c" stoichiometry="11" constant="true"/>
+          <speciesReference species="M_MAM01628c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01974c" stoichiometry="40" constant="true"/>
+          <speciesReference species="M_MAM01975c" stoichiometry="32" constant="true"/>
+          <speciesReference species="M_MAM01986c" stoichiometry="18" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="320" constant="true"/>
+          <speciesReference species="M_MAM02125c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02184c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02360c" stoichiometry="41" constant="true"/>
+          <speciesReference species="M_MAM02426c" stoichiometry="13" constant="true"/>
+          <speciesReference species="M_MAM02471c" stoichiometry="8" constant="true"/>
+          <speciesReference species="M_MAM02724c" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="316" constant="true"/>
+          <speciesReference species="M_MAM02770c" stoichiometry="8" constant="true"/>
+          <speciesReference species="M_MAM02896c" stoichiometry="14" constant="true"/>
+          <speciesReference species="M_MAM02993c" stoichiometry="12" constant="true"/>
+          <speciesReference species="M_MAM03089c" stoichiometry="8" constant="true"/>
+          <speciesReference species="M_MAM03101c" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM03135c" stoichiometry="24" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05282" sboTerm="SBO:0000176" id="MAR05282" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05282" sboTerm="SBO:0000176" id="R_MAR05282" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -171683,7 +171723,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05282">
+            <rdf:Description rdf:about="#R_MAR05282">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/r1347"/>
@@ -171693,34 +171733,34 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01359l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371l" stoichiometry="316" constant="true"/>
-          <speciesReference species="MAM02040l" stoichiometry="632" constant="true"/>
+          <speciesReference species="M_MAM01359l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371l" stoichiometry="316" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="632" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285l" stoichiometry="316" constant="true"/>
-          <speciesReference species="MAM01307l" stoichiometry="39" constant="true"/>
-          <speciesReference species="MAM01365l" stoichiometry="34" constant="true"/>
-          <speciesReference species="MAM01369l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01370l" stoichiometry="11" constant="true"/>
-          <speciesReference species="MAM01628l" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM01974l" stoichiometry="40" constant="true"/>
-          <speciesReference species="MAM01975l" stoichiometry="32" constant="true"/>
-          <speciesReference species="MAM01986l" stoichiometry="18" constant="true"/>
-          <speciesReference species="MAM02039l" stoichiometry="320" constant="true"/>
-          <speciesReference species="MAM02125l" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02184l" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02360l" stoichiometry="41" constant="true"/>
-          <speciesReference species="MAM02426l" stoichiometry="13" constant="true"/>
-          <speciesReference species="MAM02471l" stoichiometry="8" constant="true"/>
-          <speciesReference species="MAM02724l" stoichiometry="4" constant="true"/>
-          <speciesReference species="MAM02751l" stoichiometry="316" constant="true"/>
-          <speciesReference species="MAM02770l" stoichiometry="8" constant="true"/>
-          <speciesReference species="MAM02896l" stoichiometry="14" constant="true"/>
-          <speciesReference species="MAM02993l" stoichiometry="12" constant="true"/>
-          <speciesReference species="MAM03089l" stoichiometry="8" constant="true"/>
-          <speciesReference species="MAM03101l" stoichiometry="4" constant="true"/>
-          <speciesReference species="MAM03135l" stoichiometry="24" constant="true"/>
+          <speciesReference species="M_MAM01285l" stoichiometry="316" constant="true"/>
+          <speciesReference species="M_MAM01307l" stoichiometry="39" constant="true"/>
+          <speciesReference species="M_MAM01365l" stoichiometry="34" constant="true"/>
+          <speciesReference species="M_MAM01369l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01370l" stoichiometry="11" constant="true"/>
+          <speciesReference species="M_MAM01628l" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01974l" stoichiometry="40" constant="true"/>
+          <speciesReference species="M_MAM01975l" stoichiometry="32" constant="true"/>
+          <speciesReference species="M_MAM01986l" stoichiometry="18" constant="true"/>
+          <speciesReference species="M_MAM02039l" stoichiometry="320" constant="true"/>
+          <speciesReference species="M_MAM02125l" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02184l" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02360l" stoichiometry="41" constant="true"/>
+          <speciesReference species="M_MAM02426l" stoichiometry="13" constant="true"/>
+          <speciesReference species="M_MAM02471l" stoichiometry="8" constant="true"/>
+          <speciesReference species="M_MAM02724l" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM02751l" stoichiometry="316" constant="true"/>
+          <speciesReference species="M_MAM02770l" stoichiometry="8" constant="true"/>
+          <speciesReference species="M_MAM02896l" stoichiometry="14" constant="true"/>
+          <speciesReference species="M_MAM02993l" stoichiometry="12" constant="true"/>
+          <speciesReference species="M_MAM03089l" stoichiometry="8" constant="true"/>
+          <speciesReference species="M_MAM03101l" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM03135l" stoichiometry="24" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -171734,7 +171774,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05283" sboTerm="SBO:0000176" id="MAR05283" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05283" sboTerm="SBO:0000176" id="R_MAR05283" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -171742,7 +171782,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05283">
+            <rdf:Description rdf:about="#R_MAR05283">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/r1339"/>
@@ -171752,35 +171792,35 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01350c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371c" stoichiometry="266" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="532" constant="true"/>
+          <speciesReference species="M_MAM01350c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="266" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="532" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="266" constant="true"/>
-          <speciesReference species="MAM01307c" stoichiometry="23" constant="true"/>
-          <speciesReference species="MAM01365c" stoichiometry="17" constant="true"/>
-          <speciesReference species="MAM01369c" stoichiometry="5" constant="true"/>
-          <speciesReference species="MAM01370c" stoichiometry="16" constant="true"/>
-          <speciesReference species="MAM01974c" stoichiometry="30" constant="true"/>
-          <speciesReference species="MAM01975c" stoichiometry="19" constant="true"/>
-          <speciesReference species="MAM01986c" stoichiometry="11" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="273" constant="true"/>
-          <speciesReference species="MAM02125c" stoichiometry="6" constant="true"/>
-          <speciesReference species="MAM02360c" stoichiometry="41" constant="true"/>
-          <speciesReference species="MAM02426c" stoichiometry="22" constant="true"/>
-          <speciesReference species="MAM02471c" stoichiometry="4" constant="true"/>
-          <speciesReference species="MAM02724c" stoichiometry="8" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="266" constant="true"/>
-          <speciesReference species="MAM02770c" stoichiometry="10" constant="true"/>
-          <speciesReference species="MAM02896c" stoichiometry="16" constant="true"/>
-          <speciesReference species="MAM02993c" stoichiometry="12" constant="true"/>
-          <speciesReference species="MAM03089c" stoichiometry="5" constant="true"/>
-          <speciesReference species="MAM03101c" stoichiometry="7" constant="true"/>
-          <speciesReference species="MAM03135c" stoichiometry="15" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="266" constant="true"/>
+          <speciesReference species="M_MAM01307c" stoichiometry="23" constant="true"/>
+          <speciesReference species="M_MAM01365c" stoichiometry="17" constant="true"/>
+          <speciesReference species="M_MAM01369c" stoichiometry="5" constant="true"/>
+          <speciesReference species="M_MAM01370c" stoichiometry="16" constant="true"/>
+          <speciesReference species="M_MAM01974c" stoichiometry="30" constant="true"/>
+          <speciesReference species="M_MAM01975c" stoichiometry="19" constant="true"/>
+          <speciesReference species="M_MAM01986c" stoichiometry="11" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="273" constant="true"/>
+          <speciesReference species="M_MAM02125c" stoichiometry="6" constant="true"/>
+          <speciesReference species="M_MAM02360c" stoichiometry="41" constant="true"/>
+          <speciesReference species="M_MAM02426c" stoichiometry="22" constant="true"/>
+          <speciesReference species="M_MAM02471c" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM02724c" stoichiometry="8" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="266" constant="true"/>
+          <speciesReference species="M_MAM02770c" stoichiometry="10" constant="true"/>
+          <speciesReference species="M_MAM02896c" stoichiometry="16" constant="true"/>
+          <speciesReference species="M_MAM02993c" stoichiometry="12" constant="true"/>
+          <speciesReference species="M_MAM03089c" stoichiometry="5" constant="true"/>
+          <speciesReference species="M_MAM03101c" stoichiometry="7" constant="true"/>
+          <speciesReference species="M_MAM03135c" stoichiometry="15" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05284" sboTerm="SBO:0000176" id="MAR05284" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05284" sboTerm="SBO:0000176" id="R_MAR05284" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -171788,7 +171828,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05284">
+            <rdf:Description rdf:about="#R_MAR05284">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/r1340"/>
@@ -171798,32 +171838,32 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01350l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371l" stoichiometry="266" constant="true"/>
-          <speciesReference species="MAM02040l" stoichiometry="532" constant="true"/>
+          <speciesReference species="M_MAM01350l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371l" stoichiometry="266" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="532" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285l" stoichiometry="266" constant="true"/>
-          <speciesReference species="MAM01307l" stoichiometry="23" constant="true"/>
-          <speciesReference species="MAM01365l" stoichiometry="17" constant="true"/>
-          <speciesReference species="MAM01369l" stoichiometry="5" constant="true"/>
-          <speciesReference species="MAM01370l" stoichiometry="16" constant="true"/>
-          <speciesReference species="MAM01974l" stoichiometry="30" constant="true"/>
-          <speciesReference species="MAM01975l" stoichiometry="19" constant="true"/>
-          <speciesReference species="MAM01986l" stoichiometry="11" constant="true"/>
-          <speciesReference species="MAM02039l" stoichiometry="273" constant="true"/>
-          <speciesReference species="MAM02125l" stoichiometry="6" constant="true"/>
-          <speciesReference species="MAM02360l" stoichiometry="41" constant="true"/>
-          <speciesReference species="MAM02426l" stoichiometry="22" constant="true"/>
-          <speciesReference species="MAM02471l" stoichiometry="4" constant="true"/>
-          <speciesReference species="MAM02724l" stoichiometry="8" constant="true"/>
-          <speciesReference species="MAM02751l" stoichiometry="266" constant="true"/>
-          <speciesReference species="MAM02770l" stoichiometry="10" constant="true"/>
-          <speciesReference species="MAM02896l" stoichiometry="16" constant="true"/>
-          <speciesReference species="MAM02993l" stoichiometry="12" constant="true"/>
-          <speciesReference species="MAM03089l" stoichiometry="5" constant="true"/>
-          <speciesReference species="MAM03101l" stoichiometry="7" constant="true"/>
-          <speciesReference species="MAM03135l" stoichiometry="15" constant="true"/>
+          <speciesReference species="M_MAM01285l" stoichiometry="266" constant="true"/>
+          <speciesReference species="M_MAM01307l" stoichiometry="23" constant="true"/>
+          <speciesReference species="M_MAM01365l" stoichiometry="17" constant="true"/>
+          <speciesReference species="M_MAM01369l" stoichiometry="5" constant="true"/>
+          <speciesReference species="M_MAM01370l" stoichiometry="16" constant="true"/>
+          <speciesReference species="M_MAM01974l" stoichiometry="30" constant="true"/>
+          <speciesReference species="M_MAM01975l" stoichiometry="19" constant="true"/>
+          <speciesReference species="M_MAM01986l" stoichiometry="11" constant="true"/>
+          <speciesReference species="M_MAM02039l" stoichiometry="273" constant="true"/>
+          <speciesReference species="M_MAM02125l" stoichiometry="6" constant="true"/>
+          <speciesReference species="M_MAM02360l" stoichiometry="41" constant="true"/>
+          <speciesReference species="M_MAM02426l" stoichiometry="22" constant="true"/>
+          <speciesReference species="M_MAM02471l" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM02724l" stoichiometry="8" constant="true"/>
+          <speciesReference species="M_MAM02751l" stoichiometry="266" constant="true"/>
+          <speciesReference species="M_MAM02770l" stoichiometry="10" constant="true"/>
+          <speciesReference species="M_MAM02896l" stoichiometry="16" constant="true"/>
+          <speciesReference species="M_MAM02993l" stoichiometry="12" constant="true"/>
+          <speciesReference species="M_MAM03089l" stoichiometry="5" constant="true"/>
+          <speciesReference species="M_MAM03101l" stoichiometry="7" constant="true"/>
+          <speciesReference species="M_MAM03135l" stoichiometry="15" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -171837,7 +171877,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05285" sboTerm="SBO:0000176" id="MAR05285" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05285" sboTerm="SBO:0000176" id="R_MAR05285" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -171845,7 +171885,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05285">
+            <rdf:Description rdf:about="#R_MAR05285">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_5285"/>
@@ -171855,34 +171895,34 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371l" stoichiometry="284" constant="true"/>
-          <speciesReference species="MAM02040l" stoichiometry="568" constant="true"/>
-          <speciesReference species="MAM02935l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371l" stoichiometry="284" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="568" constant="true"/>
+          <speciesReference species="M_MAM02935l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285l" stoichiometry="284" constant="true"/>
-          <speciesReference species="MAM01307l" stoichiometry="21" constant="true"/>
-          <speciesReference species="MAM01365l" stoichiometry="20" constant="true"/>
-          <speciesReference species="MAM01369l" stoichiometry="11" constant="true"/>
-          <speciesReference species="MAM01370l" stoichiometry="10" constant="true"/>
-          <speciesReference species="MAM01628l" stoichiometry="5" constant="true"/>
-          <speciesReference species="MAM01974l" stoichiometry="22" constant="true"/>
-          <speciesReference species="MAM01975l" stoichiometry="17" constant="true"/>
-          <speciesReference species="MAM01986l" stoichiometry="21" constant="true"/>
-          <speciesReference species="MAM02039l" stoichiometry="277" constant="true"/>
-          <speciesReference species="MAM02125l" stoichiometry="6" constant="true"/>
-          <speciesReference species="MAM02184l" stoichiometry="10" constant="true"/>
-          <speciesReference species="MAM02360l" stoichiometry="31" constant="true"/>
-          <speciesReference species="MAM02426l" stoichiometry="19" constant="true"/>
-          <speciesReference species="MAM02471l" stoichiometry="12" constant="true"/>
-          <speciesReference species="MAM02724l" stoichiometry="6" constant="true"/>
-          <speciesReference species="MAM02751l" stoichiometry="284" constant="true"/>
-          <speciesReference species="MAM02770l" stoichiometry="12" constant="true"/>
-          <speciesReference species="MAM02896l" stoichiometry="20" constant="true"/>
-          <speciesReference species="MAM02993l" stoichiometry="12" constant="true"/>
-          <speciesReference species="MAM03089l" stoichiometry="5" constant="true"/>
-          <speciesReference species="MAM03101l" stoichiometry="4" constant="true"/>
-          <speciesReference species="MAM03135l" stoichiometry="21" constant="true"/>
+          <speciesReference species="M_MAM01285l" stoichiometry="284" constant="true"/>
+          <speciesReference species="M_MAM01307l" stoichiometry="21" constant="true"/>
+          <speciesReference species="M_MAM01365l" stoichiometry="20" constant="true"/>
+          <speciesReference species="M_MAM01369l" stoichiometry="11" constant="true"/>
+          <speciesReference species="M_MAM01370l" stoichiometry="10" constant="true"/>
+          <speciesReference species="M_MAM01628l" stoichiometry="5" constant="true"/>
+          <speciesReference species="M_MAM01974l" stoichiometry="22" constant="true"/>
+          <speciesReference species="M_MAM01975l" stoichiometry="17" constant="true"/>
+          <speciesReference species="M_MAM01986l" stoichiometry="21" constant="true"/>
+          <speciesReference species="M_MAM02039l" stoichiometry="277" constant="true"/>
+          <speciesReference species="M_MAM02125l" stoichiometry="6" constant="true"/>
+          <speciesReference species="M_MAM02184l" stoichiometry="10" constant="true"/>
+          <speciesReference species="M_MAM02360l" stoichiometry="31" constant="true"/>
+          <speciesReference species="M_MAM02426l" stoichiometry="19" constant="true"/>
+          <speciesReference species="M_MAM02471l" stoichiometry="12" constant="true"/>
+          <speciesReference species="M_MAM02724l" stoichiometry="6" constant="true"/>
+          <speciesReference species="M_MAM02751l" stoichiometry="284" constant="true"/>
+          <speciesReference species="M_MAM02770l" stoichiometry="12" constant="true"/>
+          <speciesReference species="M_MAM02896l" stoichiometry="20" constant="true"/>
+          <speciesReference species="M_MAM02993l" stoichiometry="12" constant="true"/>
+          <speciesReference species="M_MAM03089l" stoichiometry="5" constant="true"/>
+          <speciesReference species="M_MAM03101l" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM03135l" stoichiometry="21" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -171896,7 +171936,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05286" sboTerm="SBO:0000176" id="MAR05286" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05286" sboTerm="SBO:0000176" id="R_MAR05286" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -171904,7 +171944,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05286">
+            <rdf:Description rdf:about="#R_MAR05286">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_5286"/>
@@ -171914,34 +171954,34 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371l" stoichiometry="192" constant="true"/>
-          <speciesReference species="MAM02012l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040l" stoichiometry="384" constant="true"/>
+          <speciesReference species="M_MAM01371l" stoichiometry="192" constant="true"/>
+          <speciesReference species="M_MAM02012l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="384" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285l" stoichiometry="192" constant="true"/>
-          <speciesReference species="MAM01307l" stoichiometry="10" constant="true"/>
-          <speciesReference species="MAM01365l" stoichiometry="4" constant="true"/>
-          <speciesReference species="MAM01369l" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM01370l" stoichiometry="9" constant="true"/>
-          <speciesReference species="MAM01628l" stoichiometry="8" constant="true"/>
-          <speciesReference species="MAM01974l" stoichiometry="11" constant="true"/>
-          <speciesReference species="MAM01975l" stoichiometry="4" constant="true"/>
-          <speciesReference species="MAM01986l" stoichiometry="13" constant="true"/>
-          <speciesReference species="MAM02039l" stoichiometry="197" constant="true"/>
-          <speciesReference species="MAM02125l" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM02184l" stoichiometry="12" constant="true"/>
-          <speciesReference species="MAM02360l" stoichiometry="28" constant="true"/>
-          <speciesReference species="MAM02426l" stoichiometry="11" constant="true"/>
-          <speciesReference species="MAM02471l" stoichiometry="4" constant="true"/>
-          <speciesReference species="MAM02724l" stoichiometry="5" constant="true"/>
-          <speciesReference species="MAM02751l" stoichiometry="192" constant="true"/>
-          <speciesReference species="MAM02770l" stoichiometry="19" constant="true"/>
-          <speciesReference species="MAM02896l" stoichiometry="20" constant="true"/>
-          <speciesReference species="MAM02993l" stoichiometry="10" constant="true"/>
-          <speciesReference species="MAM03089l" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM03101l" stoichiometry="4" constant="true"/>
-          <speciesReference species="MAM03135l" stoichiometry="12" constant="true"/>
+          <speciesReference species="M_MAM01285l" stoichiometry="192" constant="true"/>
+          <speciesReference species="M_MAM01307l" stoichiometry="10" constant="true"/>
+          <speciesReference species="M_MAM01365l" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM01369l" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM01370l" stoichiometry="9" constant="true"/>
+          <speciesReference species="M_MAM01628l" stoichiometry="8" constant="true"/>
+          <speciesReference species="M_MAM01974l" stoichiometry="11" constant="true"/>
+          <speciesReference species="M_MAM01975l" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM01986l" stoichiometry="13" constant="true"/>
+          <speciesReference species="M_MAM02039l" stoichiometry="197" constant="true"/>
+          <speciesReference species="M_MAM02125l" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM02184l" stoichiometry="12" constant="true"/>
+          <speciesReference species="M_MAM02360l" stoichiometry="28" constant="true"/>
+          <speciesReference species="M_MAM02426l" stoichiometry="11" constant="true"/>
+          <speciesReference species="M_MAM02471l" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM02724l" stoichiometry="5" constant="true"/>
+          <speciesReference species="M_MAM02751l" stoichiometry="192" constant="true"/>
+          <speciesReference species="M_MAM02770l" stoichiometry="19" constant="true"/>
+          <speciesReference species="M_MAM02896l" stoichiometry="20" constant="true"/>
+          <speciesReference species="M_MAM02993l" stoichiometry="10" constant="true"/>
+          <speciesReference species="M_MAM03089l" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM03101l" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM03135l" stoichiometry="12" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -171955,7 +171995,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05287" sboTerm="SBO:0000176" id="MAR05287" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05287" sboTerm="SBO:0000176" id="R_MAR05287" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -171963,7 +172003,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05287">
+            <rdf:Description rdf:about="#R_MAR05287">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_5287"/>
@@ -171973,34 +172013,34 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01358l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371l" stoichiometry="324" constant="true"/>
-          <speciesReference species="MAM02040l" stoichiometry="648" constant="true"/>
+          <speciesReference species="M_MAM01358l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371l" stoichiometry="324" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="648" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285l" stoichiometry="324" constant="true"/>
-          <speciesReference species="MAM01307l" stoichiometry="38" constant="true"/>
-          <speciesReference species="MAM01365l" stoichiometry="23" constant="true"/>
-          <speciesReference species="MAM01369l" stoichiometry="5" constant="true"/>
-          <speciesReference species="MAM01370l" stoichiometry="14" constant="true"/>
-          <speciesReference species="MAM01628l" stoichiometry="6" constant="true"/>
-          <speciesReference species="MAM01974l" stoichiometry="15" constant="true"/>
-          <speciesReference species="MAM01975l" stoichiometry="7" constant="true"/>
-          <speciesReference species="MAM01986l" stoichiometry="28" constant="true"/>
-          <speciesReference species="MAM02039l" stoichiometry="316" constant="true"/>
-          <speciesReference species="MAM02125l" stoichiometry="10" constant="true"/>
-          <speciesReference species="MAM02184l" stoichiometry="6" constant="true"/>
-          <speciesReference species="MAM02360l" stoichiometry="37" constant="true"/>
-          <speciesReference species="MAM02426l" stoichiometry="14" constant="true"/>
-          <speciesReference species="MAM02471l" stoichiometry="14" constant="true"/>
-          <speciesReference species="MAM02724l" stoichiometry="10" constant="true"/>
-          <speciesReference species="MAM02751l" stoichiometry="324" constant="true"/>
-          <speciesReference species="MAM02770l" stoichiometry="26" constant="true"/>
-          <speciesReference species="MAM02896l" stoichiometry="25" constant="true"/>
-          <speciesReference species="MAM02993l" stoichiometry="10" constant="true"/>
-          <speciesReference species="MAM03089l" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM03101l" stoichiometry="14" constant="true"/>
-          <speciesReference species="MAM03135l" stoichiometry="20" constant="true"/>
+          <speciesReference species="M_MAM01285l" stoichiometry="324" constant="true"/>
+          <speciesReference species="M_MAM01307l" stoichiometry="38" constant="true"/>
+          <speciesReference species="M_MAM01365l" stoichiometry="23" constant="true"/>
+          <speciesReference species="M_MAM01369l" stoichiometry="5" constant="true"/>
+          <speciesReference species="M_MAM01370l" stoichiometry="14" constant="true"/>
+          <speciesReference species="M_MAM01628l" stoichiometry="6" constant="true"/>
+          <speciesReference species="M_MAM01974l" stoichiometry="15" constant="true"/>
+          <speciesReference species="M_MAM01975l" stoichiometry="7" constant="true"/>
+          <speciesReference species="M_MAM01986l" stoichiometry="28" constant="true"/>
+          <speciesReference species="M_MAM02039l" stoichiometry="316" constant="true"/>
+          <speciesReference species="M_MAM02125l" stoichiometry="10" constant="true"/>
+          <speciesReference species="M_MAM02184l" stoichiometry="6" constant="true"/>
+          <speciesReference species="M_MAM02360l" stoichiometry="37" constant="true"/>
+          <speciesReference species="M_MAM02426l" stoichiometry="14" constant="true"/>
+          <speciesReference species="M_MAM02471l" stoichiometry="14" constant="true"/>
+          <speciesReference species="M_MAM02724l" stoichiometry="10" constant="true"/>
+          <speciesReference species="M_MAM02751l" stoichiometry="324" constant="true"/>
+          <speciesReference species="M_MAM02770l" stoichiometry="26" constant="true"/>
+          <speciesReference species="M_MAM02896l" stoichiometry="25" constant="true"/>
+          <speciesReference species="M_MAM02993l" stoichiometry="10" constant="true"/>
+          <speciesReference species="M_MAM03089l" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM03101l" stoichiometry="14" constant="true"/>
+          <speciesReference species="M_MAM03135l" stoichiometry="20" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -172014,7 +172054,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05288" sboTerm="SBO:0000176" id="MAR05288" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05288" sboTerm="SBO:0000176" id="R_MAR05288" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -172023,7 +172063,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05288">
+            <rdf:Description rdf:about="#R_MAR05288">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.134"/>
@@ -172034,40 +172074,40 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="349" constant="true"/>
-          <speciesReference species="MAM01996c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="698" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="349" constant="true"/>
+          <speciesReference species="M_MAM01996c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="698" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="349" constant="true"/>
-          <speciesReference species="MAM01307c" stoichiometry="22" constant="true"/>
-          <speciesReference species="MAM01365c" stoichiometry="12" constant="true"/>
-          <speciesReference species="MAM01369c" stoichiometry="12" constant="true"/>
-          <speciesReference species="MAM01370c" stoichiometry="26" constant="true"/>
-          <speciesReference species="MAM01628c" stoichiometry="6" constant="true"/>
-          <speciesReference species="MAM01974c" stoichiometry="15" constant="true"/>
-          <speciesReference species="MAM01975c" stoichiometry="14" constant="true"/>
-          <speciesReference species="MAM01986c" stoichiometry="18" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="360" constant="true"/>
-          <speciesReference species="MAM02125c" stoichiometry="9" constant="true"/>
-          <speciesReference species="MAM02184c" stoichiometry="12" constant="true"/>
-          <speciesReference species="MAM02360c" stoichiometry="39" constant="true"/>
-          <speciesReference species="MAM02426c" stoichiometry="18" constant="true"/>
-          <speciesReference species="MAM02471c" stoichiometry="8" constant="true"/>
-          <speciesReference species="MAM02724c" stoichiometry="20" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="349" constant="true"/>
-          <speciesReference species="MAM02770c" stoichiometry="15" constant="true"/>
-          <speciesReference species="MAM02896c" stoichiometry="31" constant="true"/>
-          <speciesReference species="MAM02993c" stoichiometry="25" constant="true"/>
-          <speciesReference species="MAM03089c" stoichiometry="7" constant="true"/>
-          <speciesReference species="MAM03101c" stoichiometry="13" constant="true"/>
-          <speciesReference species="MAM03135c" stoichiometry="28" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="349" constant="true"/>
+          <speciesReference species="M_MAM01307c" stoichiometry="22" constant="true"/>
+          <speciesReference species="M_MAM01365c" stoichiometry="12" constant="true"/>
+          <speciesReference species="M_MAM01369c" stoichiometry="12" constant="true"/>
+          <speciesReference species="M_MAM01370c" stoichiometry="26" constant="true"/>
+          <speciesReference species="M_MAM01628c" stoichiometry="6" constant="true"/>
+          <speciesReference species="M_MAM01974c" stoichiometry="15" constant="true"/>
+          <speciesReference species="M_MAM01975c" stoichiometry="14" constant="true"/>
+          <speciesReference species="M_MAM01986c" stoichiometry="18" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="360" constant="true"/>
+          <speciesReference species="M_MAM02125c" stoichiometry="9" constant="true"/>
+          <speciesReference species="M_MAM02184c" stoichiometry="12" constant="true"/>
+          <speciesReference species="M_MAM02360c" stoichiometry="39" constant="true"/>
+          <speciesReference species="M_MAM02426c" stoichiometry="18" constant="true"/>
+          <speciesReference species="M_MAM02471c" stoichiometry="8" constant="true"/>
+          <speciesReference species="M_MAM02724c" stoichiometry="20" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="349" constant="true"/>
+          <speciesReference species="M_MAM02770c" stoichiometry="15" constant="true"/>
+          <speciesReference species="M_MAM02896c" stoichiometry="31" constant="true"/>
+          <speciesReference species="M_MAM02993c" stoichiometry="25" constant="true"/>
+          <speciesReference species="M_MAM03089c" stoichiometry="7" constant="true"/>
+          <speciesReference species="M_MAM03101c" stoichiometry="13" constant="true"/>
+          <speciesReference species="M_MAM03135c" stoichiometry="28" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Hacd1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05289" sboTerm="SBO:0000176" id="MAR05289" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05289" sboTerm="SBO:0000176" id="R_MAR05289" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -172075,7 +172115,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05289">
+            <rdf:Description rdf:about="#R_MAR05289">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_5289"/>
@@ -172085,33 +172125,33 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371l" stoichiometry="467" constant="true"/>
-          <speciesReference species="MAM02040l" stoichiometry="934" constant="true"/>
-          <speciesReference species="MAM02757l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371l" stoichiometry="467" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="934" constant="true"/>
+          <speciesReference species="M_MAM02757l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285l" stoichiometry="467" constant="true"/>
-          <speciesReference species="MAM01307l" stoichiometry="31" constant="true"/>
-          <speciesReference species="MAM01365l" stoichiometry="19" constant="true"/>
-          <speciesReference species="MAM01369l" stoichiometry="19" constant="true"/>
-          <speciesReference species="MAM01370l" stoichiometry="27" constant="true"/>
-          <speciesReference species="MAM01628l" stoichiometry="19" constant="true"/>
-          <speciesReference species="MAM01974l" stoichiometry="34" constant="true"/>
-          <speciesReference species="MAM01975l" stoichiometry="16" constant="true"/>
-          <speciesReference species="MAM01986l" stoichiometry="28" constant="true"/>
-          <speciesReference species="MAM02039l" stoichiometry="476" constant="true"/>
-          <speciesReference species="MAM02125l" stoichiometry="13" constant="true"/>
-          <speciesReference species="MAM02184l" stoichiometry="29" constant="true"/>
-          <speciesReference species="MAM02360l" stoichiometry="47" constant="true"/>
-          <speciesReference species="MAM02426l" stoichiometry="33" constant="true"/>
-          <speciesReference species="MAM02471l" stoichiometry="15" constant="true"/>
-          <speciesReference species="MAM02724l" stoichiometry="22" constant="true"/>
-          <speciesReference species="MAM02751l" stoichiometry="467" constant="true"/>
-          <speciesReference species="MAM02770l" stoichiometry="20" constant="true"/>
-          <speciesReference species="MAM02896l" stoichiometry="37" constant="true"/>
-          <speciesReference species="MAM02993l" stoichiometry="18" constant="true"/>
-          <speciesReference species="MAM03101l" stoichiometry="14" constant="true"/>
-          <speciesReference species="MAM03135l" stoichiometry="27" constant="true"/>
+          <speciesReference species="M_MAM01285l" stoichiometry="467" constant="true"/>
+          <speciesReference species="M_MAM01307l" stoichiometry="31" constant="true"/>
+          <speciesReference species="M_MAM01365l" stoichiometry="19" constant="true"/>
+          <speciesReference species="M_MAM01369l" stoichiometry="19" constant="true"/>
+          <speciesReference species="M_MAM01370l" stoichiometry="27" constant="true"/>
+          <speciesReference species="M_MAM01628l" stoichiometry="19" constant="true"/>
+          <speciesReference species="M_MAM01974l" stoichiometry="34" constant="true"/>
+          <speciesReference species="M_MAM01975l" stoichiometry="16" constant="true"/>
+          <speciesReference species="M_MAM01986l" stoichiometry="28" constant="true"/>
+          <speciesReference species="M_MAM02039l" stoichiometry="476" constant="true"/>
+          <speciesReference species="M_MAM02125l" stoichiometry="13" constant="true"/>
+          <speciesReference species="M_MAM02184l" stoichiometry="29" constant="true"/>
+          <speciesReference species="M_MAM02360l" stoichiometry="47" constant="true"/>
+          <speciesReference species="M_MAM02426l" stoichiometry="33" constant="true"/>
+          <speciesReference species="M_MAM02471l" stoichiometry="15" constant="true"/>
+          <speciesReference species="M_MAM02724l" stoichiometry="22" constant="true"/>
+          <speciesReference species="M_MAM02751l" stoichiometry="467" constant="true"/>
+          <speciesReference species="M_MAM02770l" stoichiometry="20" constant="true"/>
+          <speciesReference species="M_MAM02896l" stoichiometry="37" constant="true"/>
+          <speciesReference species="M_MAM02993l" stoichiometry="18" constant="true"/>
+          <speciesReference species="M_MAM03101l" stoichiometry="14" constant="true"/>
+          <speciesReference species="M_MAM03135l" stoichiometry="27" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -172125,7 +172165,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05290" sboTerm="SBO:0000176" id="MAR05290" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05290" sboTerm="SBO:0000176" id="R_MAR05290" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -172133,7 +172173,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05290">
+            <rdf:Description rdf:about="#R_MAR05290">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_5290"/>
@@ -172143,34 +172183,34 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01352l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371l" stoichiometry="4562" constant="true"/>
-          <speciesReference species="MAM02040l" stoichiometry="9124" constant="true"/>
+          <speciesReference species="M_MAM01352l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371l" stoichiometry="4562" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="9124" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285l" stoichiometry="4562" constant="true"/>
-          <speciesReference species="MAM01307l" stoichiometry="276" constant="true"/>
-          <speciesReference species="MAM01365l" stoichiometry="150" constant="true"/>
-          <speciesReference species="MAM01369l" stoichiometry="245" constant="true"/>
-          <speciesReference species="MAM01370l" stoichiometry="234" constant="true"/>
-          <speciesReference species="MAM01628l" stoichiometry="24" constant="true"/>
-          <speciesReference species="MAM01974l" stoichiometry="297" constant="true"/>
-          <speciesReference species="MAM01975l" stoichiometry="231" constant="true"/>
-          <speciesReference species="MAM01986l" stoichiometry="207" constant="true"/>
-          <speciesReference species="MAM02039l" stoichiometry="4587" constant="true"/>
-          <speciesReference species="MAM02125l" stoichiometry="114" constant="true"/>
-          <speciesReference species="MAM02184l" stoichiometry="287" constant="true"/>
-          <speciesReference species="MAM02360l" stoichiometry="536" constant="true"/>
-          <speciesReference species="MAM02426l" stoichiometry="356" constant="true"/>
-          <speciesReference species="MAM02471l" stoichiometry="79" constant="true"/>
-          <speciesReference species="MAM02724l" stoichiometry="224" constant="true"/>
-          <speciesReference species="MAM02751l" stoichiometry="4562" constant="true"/>
-          <speciesReference species="MAM02770l" stoichiometry="171" constant="true"/>
-          <speciesReference species="MAM02896l" stoichiometry="393" constant="true"/>
-          <speciesReference species="MAM02993l" stoichiometry="299" constant="true"/>
-          <speciesReference species="MAM03089l" stoichiometry="37" constant="true"/>
-          <speciesReference species="MAM03101l" stoichiometry="153" constant="true"/>
-          <speciesReference species="MAM03135l" stoichiometry="250" constant="true"/>
+          <speciesReference species="M_MAM01285l" stoichiometry="4562" constant="true"/>
+          <speciesReference species="M_MAM01307l" stoichiometry="276" constant="true"/>
+          <speciesReference species="M_MAM01365l" stoichiometry="150" constant="true"/>
+          <speciesReference species="M_MAM01369l" stoichiometry="245" constant="true"/>
+          <speciesReference species="M_MAM01370l" stoichiometry="234" constant="true"/>
+          <speciesReference species="M_MAM01628l" stoichiometry="24" constant="true"/>
+          <speciesReference species="M_MAM01974l" stoichiometry="297" constant="true"/>
+          <speciesReference species="M_MAM01975l" stoichiometry="231" constant="true"/>
+          <speciesReference species="M_MAM01986l" stoichiometry="207" constant="true"/>
+          <speciesReference species="M_MAM02039l" stoichiometry="4587" constant="true"/>
+          <speciesReference species="M_MAM02125l" stoichiometry="114" constant="true"/>
+          <speciesReference species="M_MAM02184l" stoichiometry="287" constant="true"/>
+          <speciesReference species="M_MAM02360l" stoichiometry="536" constant="true"/>
+          <speciesReference species="M_MAM02426l" stoichiometry="356" constant="true"/>
+          <speciesReference species="M_MAM02471l" stoichiometry="79" constant="true"/>
+          <speciesReference species="M_MAM02724l" stoichiometry="224" constant="true"/>
+          <speciesReference species="M_MAM02751l" stoichiometry="4562" constant="true"/>
+          <speciesReference species="M_MAM02770l" stoichiometry="171" constant="true"/>
+          <speciesReference species="M_MAM02896l" stoichiometry="393" constant="true"/>
+          <speciesReference species="M_MAM02993l" stoichiometry="299" constant="true"/>
+          <speciesReference species="M_MAM03089l" stoichiometry="37" constant="true"/>
+          <speciesReference species="M_MAM03101l" stoichiometry="153" constant="true"/>
+          <speciesReference species="M_MAM03135l" stoichiometry="250" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -172184,7 +172224,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05291" sboTerm="SBO:0000176" id="MAR05291" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05291" sboTerm="SBO:0000176" id="R_MAR05291" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -172192,7 +172232,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05291">
+            <rdf:Description rdf:about="#R_MAR05291">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_5291"/>
@@ -172202,37 +172242,37 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371l" stoichiometry="474" constant="true"/>
-          <speciesReference species="MAM02040l" stoichiometry="948" constant="true"/>
-          <speciesReference species="MAM02414l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371l" stoichiometry="474" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="948" constant="true"/>
+          <speciesReference species="M_MAM02414l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285l" stoichiometry="474" constant="true"/>
-          <speciesReference species="MAM01307l" stoichiometry="34" constant="true"/>
-          <speciesReference species="MAM01365l" stoichiometry="22" constant="true"/>
-          <speciesReference species="MAM01369l" stoichiometry="20" constant="true"/>
-          <speciesReference species="MAM01370l" stoichiometry="22" constant="true"/>
-          <speciesReference species="MAM01628l" stoichiometry="10" constant="true"/>
-          <speciesReference species="MAM01974l" stoichiometry="31" constant="true"/>
-          <speciesReference species="MAM01975l" stoichiometry="13" constant="true"/>
-          <speciesReference species="MAM01986l" stoichiometry="32" constant="true"/>
-          <speciesReference species="MAM02039l" stoichiometry="470" constant="true"/>
-          <speciesReference species="MAM02125l" stoichiometry="16" constant="true"/>
-          <speciesReference species="MAM02184l" stoichiometry="25" constant="true"/>
-          <speciesReference species="MAM02360l" stoichiometry="38" constant="true"/>
-          <speciesReference species="MAM02426l" stoichiometry="35" constant="true"/>
-          <speciesReference species="MAM02471l" stoichiometry="7" constant="true"/>
-          <speciesReference species="MAM02724l" stoichiometry="21" constant="true"/>
-          <speciesReference species="MAM02751l" stoichiometry="474" constant="true"/>
-          <speciesReference species="MAM02770l" stoichiometry="20" constant="true"/>
-          <speciesReference species="MAM02896l" stoichiometry="43" constant="true"/>
-          <speciesReference species="MAM02993l" stoichiometry="25" constant="true"/>
-          <speciesReference species="MAM03089l" stoichiometry="9" constant="true"/>
-          <speciesReference species="MAM03101l" stoichiometry="17" constant="true"/>
-          <speciesReference species="MAM03135l" stoichiometry="35" constant="true"/>
+          <speciesReference species="M_MAM01285l" stoichiometry="474" constant="true"/>
+          <speciesReference species="M_MAM01307l" stoichiometry="34" constant="true"/>
+          <speciesReference species="M_MAM01365l" stoichiometry="22" constant="true"/>
+          <speciesReference species="M_MAM01369l" stoichiometry="20" constant="true"/>
+          <speciesReference species="M_MAM01370l" stoichiometry="22" constant="true"/>
+          <speciesReference species="M_MAM01628l" stoichiometry="10" constant="true"/>
+          <speciesReference species="M_MAM01974l" stoichiometry="31" constant="true"/>
+          <speciesReference species="M_MAM01975l" stoichiometry="13" constant="true"/>
+          <speciesReference species="M_MAM01986l" stoichiometry="32" constant="true"/>
+          <speciesReference species="M_MAM02039l" stoichiometry="470" constant="true"/>
+          <speciesReference species="M_MAM02125l" stoichiometry="16" constant="true"/>
+          <speciesReference species="M_MAM02184l" stoichiometry="25" constant="true"/>
+          <speciesReference species="M_MAM02360l" stoichiometry="38" constant="true"/>
+          <speciesReference species="M_MAM02426l" stoichiometry="35" constant="true"/>
+          <speciesReference species="M_MAM02471l" stoichiometry="7" constant="true"/>
+          <speciesReference species="M_MAM02724l" stoichiometry="21" constant="true"/>
+          <speciesReference species="M_MAM02751l" stoichiometry="474" constant="true"/>
+          <speciesReference species="M_MAM02770l" stoichiometry="20" constant="true"/>
+          <speciesReference species="M_MAM02896l" stoichiometry="43" constant="true"/>
+          <speciesReference species="M_MAM02993l" stoichiometry="25" constant="true"/>
+          <speciesReference species="M_MAM03089l" stoichiometry="9" constant="true"/>
+          <speciesReference species="M_MAM03101l" stoichiometry="17" constant="true"/>
+          <speciesReference species="M_MAM03135l" stoichiometry="35" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09817" sboTerm="SBO:0000176" id="MAR09817" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09817" sboTerm="SBO:0000176" id="R_MAR09817" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -172240,7 +172280,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09817">
+            <rdf:Description rdf:about="#R_MAR09817">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_9817"/>
@@ -172250,36 +172290,36 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="104" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="208" constant="true"/>
-          <speciesReference species="MAM02990c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="104" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="208" constant="true"/>
+          <speciesReference species="M_MAM02990c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="104" constant="true"/>
-          <speciesReference species="MAM01307c" stoichiometry="8" constant="true"/>
-          <speciesReference species="MAM01369c" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM01370c" stoichiometry="7" constant="true"/>
-          <speciesReference species="MAM01628c" stoichiometry="5" constant="true"/>
-          <speciesReference species="MAM01974c" stoichiometry="10" constant="true"/>
-          <speciesReference species="MAM01975c" stoichiometry="5" constant="true"/>
-          <speciesReference species="MAM01986c" stoichiometry="5" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="109" constant="true"/>
-          <speciesReference species="MAM02125c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02184c" stoichiometry="4" constant="true"/>
-          <speciesReference species="MAM02360c" stoichiometry="6" constant="true"/>
-          <speciesReference species="MAM02426c" stoichiometry="12" constant="true"/>
-          <speciesReference species="MAM02471c" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM02724c" stoichiometry="9" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="104" constant="true"/>
-          <speciesReference species="MAM02770c" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM02896c" stoichiometry="7" constant="true"/>
-          <speciesReference species="MAM02993c" stoichiometry="4" constant="true"/>
-          <speciesReference species="MAM03089c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03101c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03135c" stoichiometry="11" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="104" constant="true"/>
+          <speciesReference species="M_MAM01307c" stoichiometry="8" constant="true"/>
+          <speciesReference species="M_MAM01369c" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM01370c" stoichiometry="7" constant="true"/>
+          <speciesReference species="M_MAM01628c" stoichiometry="5" constant="true"/>
+          <speciesReference species="M_MAM01974c" stoichiometry="10" constant="true"/>
+          <speciesReference species="M_MAM01975c" stoichiometry="5" constant="true"/>
+          <speciesReference species="M_MAM01986c" stoichiometry="5" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="109" constant="true"/>
+          <speciesReference species="M_MAM02125c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02184c" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM02360c" stoichiometry="6" constant="true"/>
+          <speciesReference species="M_MAM02426c" stoichiometry="12" constant="true"/>
+          <speciesReference species="M_MAM02471c" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM02724c" stoichiometry="9" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="104" constant="true"/>
+          <speciesReference species="M_MAM02770c" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM02896c" stoichiometry="7" constant="true"/>
+          <speciesReference species="M_MAM02993c" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM03089c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03101c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03135c" stoichiometry="11" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09818" sboTerm="SBO:0000176" id="MAR09818" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09818" sboTerm="SBO:0000176" id="R_MAR09818" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -172287,7 +172327,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09818">
+            <rdf:Description rdf:about="#R_MAR09818">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_9818"/>
@@ -172297,37 +172337,37 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="165" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="330" constant="true"/>
-          <speciesReference species="MAM02487c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="165" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="330" constant="true"/>
+          <speciesReference species="M_MAM02487c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="165" constant="true"/>
-          <speciesReference species="MAM01307c" stoichiometry="11" constant="true"/>
-          <speciesReference species="MAM01365c" stoichiometry="9" constant="true"/>
-          <speciesReference species="MAM01369c" stoichiometry="4" constant="true"/>
-          <speciesReference species="MAM01370c" stoichiometry="12" constant="true"/>
-          <speciesReference species="MAM01628c" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM01974c" stoichiometry="6" constant="true"/>
-          <speciesReference species="MAM01975c" stoichiometry="10" constant="true"/>
-          <speciesReference species="MAM01986c" stoichiometry="10" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="163" constant="true"/>
-          <speciesReference species="MAM02125c" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM02184c" stoichiometry="9" constant="true"/>
-          <speciesReference species="MAM02360c" stoichiometry="15" constant="true"/>
-          <speciesReference species="MAM02426c" stoichiometry="11" constant="true"/>
-          <speciesReference species="MAM02471c" stoichiometry="4" constant="true"/>
-          <speciesReference species="MAM02724c" stoichiometry="6" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="165" constant="true"/>
-          <speciesReference species="MAM02770c" stoichiometry="12" constant="true"/>
-          <speciesReference species="MAM02896c" stoichiometry="8" constant="true"/>
-          <speciesReference species="MAM02993c" stoichiometry="12" constant="true"/>
-          <speciesReference species="MAM03089c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03101c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03135c" stoichiometry="17" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="165" constant="true"/>
+          <speciesReference species="M_MAM01307c" stoichiometry="11" constant="true"/>
+          <speciesReference species="M_MAM01365c" stoichiometry="9" constant="true"/>
+          <speciesReference species="M_MAM01369c" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM01370c" stoichiometry="12" constant="true"/>
+          <speciesReference species="M_MAM01628c" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM01974c" stoichiometry="6" constant="true"/>
+          <speciesReference species="M_MAM01975c" stoichiometry="10" constant="true"/>
+          <speciesReference species="M_MAM01986c" stoichiometry="10" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="163" constant="true"/>
+          <speciesReference species="M_MAM02125c" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM02184c" stoichiometry="9" constant="true"/>
+          <speciesReference species="M_MAM02360c" stoichiometry="15" constant="true"/>
+          <speciesReference species="M_MAM02426c" stoichiometry="11" constant="true"/>
+          <speciesReference species="M_MAM02471c" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM02724c" stoichiometry="6" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="165" constant="true"/>
+          <speciesReference species="M_MAM02770c" stoichiometry="12" constant="true"/>
+          <speciesReference species="M_MAM02896c" stoichiometry="8" constant="true"/>
+          <speciesReference species="M_MAM02993c" stoichiometry="12" constant="true"/>
+          <speciesReference species="M_MAM03089c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03101c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03135c" stoichiometry="17" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05407" sboTerm="SBO:0000176" id="MAR05407" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05407" sboTerm="SBO:0000176" id="R_MAR05407" name="carbonate hydro-lyase (carbon-dioxide-forming)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -172336,7 +172376,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05407">
+            <rdf:Description rdf:about="#R_MAR05407">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.1"/>
@@ -172349,11 +172389,11 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01596e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01596e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01421e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01421e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -172365,7 +172405,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03851" sboTerm="SBO:0000176" id="MAR03851" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03851" sboTerm="SBO:0000176" id="R_MAR03851" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -172373,7 +172413,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03851">
+            <rdf:Description rdf:about="#R_MAR03851">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/3SPYRSP"/>
@@ -172386,16 +172426,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00919c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00919c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02819c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02949c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02819c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02949c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03861" sboTerm="SBO:0000176" id="MAR03861" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03861" sboTerm="SBO:0000176" id="R_MAR03861" name="3-sulfino-L-alanine:2-oxoglutarate aminotransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -172403,7 +172443,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03861">
+            <rdf:Description rdf:about="#R_MAR03861">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.6.1.1"/>
@@ -172416,19 +172456,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00918c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01306c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00918c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01306c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00919c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01974c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00919c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01974c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Got1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03866" sboTerm="SBO:0000176" id="MAR03866" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03866" sboTerm="SBO:0000176" id="R_MAR03866" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -172436,7 +172476,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03866">
+            <rdf:Description rdf:about="#R_MAR03866">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/3SPYRSPm"/>
@@ -172448,16 +172488,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00919m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00919m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02819m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02949m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02819m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02949m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR04084" sboTerm="SBO:0000176" id="MAR04084" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04084" sboTerm="SBO:0000176" id="R_MAR04084" name="adenosine-3&apos;,5&apos;-bisphosphate 3&apos;-phosphohydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -172466,7 +172506,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04084">
+            <rdf:Description rdf:about="#R_MAR04084">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.3.7"/>
@@ -172480,12 +172520,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02681c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02681c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01334c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -172494,7 +172534,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04187" sboTerm="SBO:0000176" id="MAR04187" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04187" sboTerm="SBO:0000176" id="R_MAR04187" name="3&apos;-phospho-5&apos;-adenylyl sulfate 3&apos;-phosphohydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -172503,7 +172543,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04187">
+            <rdf:Description rdf:about="#R_MAR04187">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.3.7"/>
@@ -172517,12 +172557,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02682c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02682c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01283c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01283c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -172531,7 +172571,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04188" sboTerm="SBO:0000176" id="MAR04188" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04188" sboTerm="SBO:0000176" id="R_MAR04188" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -172539,7 +172579,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04188">
+            <rdf:Description rdf:about="#R_MAR04188">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105460"/>
@@ -172550,18 +172590,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="4" constant="true"/>
-          <speciesReference species="MAM02682c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM02682c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01267c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="4" constant="true"/>
-          <speciesReference species="MAM02681c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01267c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM02681c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR04701" sboTerm="SBO:0000176" id="MAR04701" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04701" sboTerm="SBO:0000176" id="R_MAR04701" name="S-adenosyl-L-methionine:sarcosine N-methyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -172569,7 +172609,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04701">
+            <rdf:Description rdf:about="#R_MAR04701">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.5.8.4"/>
@@ -172582,19 +172622,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01708c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02871c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01708c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02871c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02877c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02880c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02877c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02880c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Sardh"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04840" sboTerm="SBO:0000176" id="MAR04840" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04840" sboTerm="SBO:0000176" id="R_MAR04840" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -172602,7 +172642,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04840">
+            <rdf:Description rdf:about="#R_MAR04840">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.50"/>
@@ -172615,19 +172655,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02043c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02043c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02042c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02946c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02042c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02946c" stoichiometry="1" constant="true"/>
         </listOfProducts>
-        <fbc:geneProductAssociation>
-          <fbc:geneProductRef fbc:geneProduct="Akr1B"/>
-        </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04842" sboTerm="SBO:0000176" id="MAR04842" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04842" sboTerm="SBO:0000176" id="R_MAR04842" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -172635,7 +172672,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04842">
+            <rdf:Description rdf:about="#R_MAR04842">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.2.1.5"/>
@@ -172647,11 +172684,11 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02877c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02877c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01266c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02871c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01266c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02871c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -172659,7 +172696,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08662" sboTerm="SBO:0000176" id="MAR08662" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08662" sboTerm="SBO:0000176" id="R_MAR08662" name="Itaconate:CoA ligase (GDP-forming)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -172667,7 +172704,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08662">
+            <rdf:Description rdf:about="#R_MAR08662">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.5"/>
@@ -172681,17 +172718,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02034m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02191m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02034m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02191m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01948m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02192m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01948m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02192m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08663" sboTerm="SBO:0000176" id="MAR08663" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08663" sboTerm="SBO:0000176" id="R_MAR08663" name="Itaconate:CoA ligase (ADP-forming)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -172699,7 +172736,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08663">
+            <rdf:Description rdf:about="#R_MAR08663">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.5"/>
@@ -172713,17 +172750,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01285m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02192m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02192m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01371m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02191m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02191m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08664" sboTerm="SBO:0000176" id="MAR08664" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08664" sboTerm="SBO:0000176" id="R_MAR08664" name="(3S)-citramalyl-CoA hydro-lyase (itaconyl-CoA-forming)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -172731,7 +172768,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08664">
+            <rdf:Description rdf:about="#R_MAR08664">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.56"/>
@@ -172745,14 +172782,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00084m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00084m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02192m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02192m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08665" sboTerm="SBO:0000176" id="MAR08665" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08665" sboTerm="SBO:0000176" id="R_MAR08665" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -172760,7 +172797,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08665">
+            <rdf:Description rdf:about="#R_MAR08665">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.56"/>
@@ -172773,14 +172810,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00084m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00084m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02466m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02466m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08666" sboTerm="SBO:0000176" id="MAR08666" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08666" sboTerm="SBO:0000176" id="R_MAR08666" name="(3S)-citramalyl-CoA pyruvate-lyase (acetyl-CoA-forming)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -172788,7 +172825,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08666">
+            <rdf:Description rdf:about="#R_MAR08666">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.1.3.25"/>
@@ -172804,14 +172841,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00084m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00084m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02819m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02819m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08667" sboTerm="SBO:0000176" id="MAR08667" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08667" sboTerm="SBO:0000176" id="R_MAR08667" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -172819,7 +172856,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08667">
+            <rdf:Description rdf:about="#R_MAR08667">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.5"/>
@@ -172832,17 +172869,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01285m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02466m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02466m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01371m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02465m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02465m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08668" sboTerm="SBO:0000176" id="MAR08668" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08668" sboTerm="SBO:0000176" id="R_MAR08668" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -172850,7 +172887,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08668">
+            <rdf:Description rdf:about="#R_MAR08668">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.5"/>
@@ -172863,17 +172900,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02034m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02465m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02034m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02465m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01948m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02466m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01948m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02466m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08669" sboTerm="SBO:0000176" id="MAR08669" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08669" sboTerm="SBO:0000176" id="R_MAR08669" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -172881,7 +172918,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08669">
+            <rdf:Description rdf:about="#R_MAR08669">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/MESCOALm"/>
@@ -172893,15 +172930,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02466m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02466m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02819m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02819m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR00710" sboTerm="SBO:0000176" id="MAR00710" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00710" sboTerm="SBO:0000176" id="R_MAR00710" name="Isocitrate:NADP+ oxidoreductase (decarboxylating)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -172910,7 +172947,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00710">
+            <rdf:Description rdf:about="#R_MAR00710">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.42"/>
@@ -172924,19 +172961,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02183c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02183c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01306c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01596c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01306c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01596c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Idh"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03787" sboTerm="SBO:0000176" id="MAR03787" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03787" sboTerm="SBO:0000176" id="R_MAR03787" name="succinyl-CoA:acetoacetate CoA-transferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -172945,7 +172982,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03787">
+            <rdf:Description rdf:about="#R_MAR03787">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.8.3.5"/>
@@ -172962,18 +172999,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01253m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02944m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01253m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02944m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01255m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02943m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01255m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02943m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="SCOT"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03957" sboTerm="SBO:0000176" id="MAR03957" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03957" sboTerm="SBO:0000176" id="R_MAR03957" name="isocitrate:NAD+ oxidoreductase (decarboxylating)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -172981,7 +173018,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03957">
+            <rdf:Description rdf:about="#R_MAR03957">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.41"/>
@@ -172995,13 +173032,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02183m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02183m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01306m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01596m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01306m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01596m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -173011,7 +173048,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03958" sboTerm="SBO:0000176" id="MAR03958" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03958" sboTerm="SBO:0000176" id="R_MAR03958" name="Isocitrate:NADP+ oxidoreductase (decarboxylating)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -173019,7 +173056,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03958">
+            <rdf:Description rdf:about="#R_MAR03958">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.42"/>
@@ -173033,19 +173070,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02183m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02183m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01306m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01596m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01306m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01596m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Idh"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04111" sboTerm="SBO:0000176" id="MAR04111" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04111" sboTerm="SBO:0000176" id="R_MAR04111" name="oxalosuccinate carboxy-lyase (2-oxoglutarate-forming)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -173054,7 +173091,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04111">
+            <rdf:Description rdf:about="#R_MAR04111">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.42"/>
@@ -173067,18 +173104,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02662c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02662c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01306c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01596c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01306c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01596c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Idh"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04112" sboTerm="SBO:0000176" id="MAR04112" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04112" sboTerm="SBO:0000176" id="R_MAR04112" name="oxalosuccinate carboxy-lyase (2-oxoglutarate-forming)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -173087,7 +173124,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04112">
+            <rdf:Description rdf:about="#R_MAR04112">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.42"/>
@@ -173100,18 +173137,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02662m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02662m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01306m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01596m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01306m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01596m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Idh"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04113" sboTerm="SBO:0000176" id="MAR04113" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04113" sboTerm="SBO:0000176" id="R_MAR04113" name="oxalosuccinate carboxy-lyase (2-oxoglutarate-forming)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -173120,7 +173157,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04113">
+            <rdf:Description rdf:about="#R_MAR04113">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.42"/>
@@ -173133,18 +173170,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02662x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02662x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01306x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01596x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01306x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01596x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Idh"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04139" sboTerm="SBO:0000176" id="MAR04139" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04139" sboTerm="SBO:0000176" id="R_MAR04139" name="(S)-malate:NAD+ oxidoreductase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -173153,7 +173190,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04139">
+            <rdf:Description rdf:about="#R_MAR04139">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.37"/>
@@ -173167,19 +173204,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02633c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02633c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02439c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02439c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Mdh1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04141" sboTerm="SBO:0000176" id="MAR04141" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04141" sboTerm="SBO:0000176" id="R_MAR04141" name="(S)-malate:NAD+ oxidoreductase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -173188,7 +173225,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04141">
+            <rdf:Description rdf:about="#R_MAR04141">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.37"/>
@@ -173204,19 +173241,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02633m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02633m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02439m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02439m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Mdh2"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04145" sboTerm="SBO:0000176" id="MAR04145" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04145" sboTerm="SBO:0000176" id="R_MAR04145" name="acetyl-CoA:oxaloacetate C-acetyltransferase (thioester-hydrolysing)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -173225,7 +173262,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04145">
+            <rdf:Description rdf:about="#R_MAR04145">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.3.1"/>
@@ -173242,20 +173279,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01587m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01587m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02633m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02633m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="kdn"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04147" sboTerm="SBO:0000176" id="MAR04147" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04147" sboTerm="SBO:0000176" id="R_MAR04147" name="Succinate:CoA ligase (GDP-forming)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -173264,7 +173301,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04147">
+            <rdf:Description rdf:about="#R_MAR04147">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.4"/>
@@ -173280,17 +173317,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02034m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02943m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02034m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02943m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01948m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02944m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01948m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02944m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR04149" sboTerm="SBO:0000176" id="MAR04149" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04149" sboTerm="SBO:0000176" id="R_MAR04149" name="acetyl-CoA:oxaloacetate C-acetyltransferase [(pro-S)-carboxymethyl-forming, ADP-phosphorylating]" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -173299,7 +173336,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04149">
+            <rdf:Description rdf:about="#R_MAR04149">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.3.8"/>
@@ -173315,21 +173352,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01587c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01587c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02633c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02633c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="ATPCL"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04152" sboTerm="SBO:0000176" id="MAR04152" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04152" sboTerm="SBO:0000176" id="R_MAR04152" name="Succinate:CoA ligase (ADP-forming)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -173338,7 +173375,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04152">
+            <rdf:Description rdf:about="#R_MAR04152">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.5"/>
@@ -173354,17 +173391,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01285m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02944m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02944m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01371m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02943m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02943m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR04209" sboTerm="SBO:0000176" id="MAR04209" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04209" sboTerm="SBO:0000176" id="R_MAR04209" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -173373,7 +173410,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04209">
+            <rdf:Description rdf:about="#R_MAR04209">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.2.4.2"/>
@@ -173386,13 +173423,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01306m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02984m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01306m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02984m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00765m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01596m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00765m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01596m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -173401,7 +173438,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04408" sboTerm="SBO:0000176" id="MAR04408" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04408" sboTerm="SBO:0000176" id="R_MAR04408" name="(S)-malate hydro-lyase (fumarate-forming)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -173410,7 +173447,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04408">
+            <rdf:Description rdf:about="#R_MAR04408">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.2"/>
@@ -173424,17 +173461,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01862c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01862c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02439c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02439c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Fum1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04410" sboTerm="SBO:0000176" id="MAR04410" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04410" sboTerm="SBO:0000176" id="R_MAR04410" name="(S)-malate hydro-lyase (fumarate-forming)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -173443,7 +173480,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04410">
+            <rdf:Description rdf:about="#R_MAR04410">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.2"/>
@@ -173457,17 +173494,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01862m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01862m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02439m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02439m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Fum1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04454" sboTerm="SBO:0000176" id="MAR04454" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04454" sboTerm="SBO:0000176" id="R_MAR04454" name="citrate hydroxymutase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -173476,7 +173513,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04454">
+            <rdf:Description rdf:about="#R_MAR04454">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.3"/>
@@ -173490,13 +173527,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01587c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01587c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02183c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02183c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR04456" sboTerm="SBO:0000176" id="MAR04456" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04456" sboTerm="SBO:0000176" id="R_MAR04456" name="citrate hydroxymutase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -173505,7 +173542,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04456">
+            <rdf:Description rdf:about="#R_MAR04456">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.3"/>
@@ -173519,13 +173556,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01587m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01587m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02183m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02183m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR04458" sboTerm="SBO:0000176" id="MAR04458" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04458" sboTerm="SBO:0000176" id="R_MAR04458" name="citrate hydro-lyase (cis-aconitate-forming)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -173534,7 +173571,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04458">
+            <rdf:Description rdf:about="#R_MAR04458">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.3"/>
@@ -173550,14 +173587,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01580m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01580m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01587m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01587m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR04465" sboTerm="SBO:0000176" id="MAR04465" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04465" sboTerm="SBO:0000176" id="R_MAR04465" name="D-glycerate:NADP+ 2-oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -173566,7 +173603,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04465">
+            <rdf:Description rdf:about="#R_MAR04465">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.79"/>
@@ -173581,19 +173618,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02154c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02154c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01982c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01982c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG1236"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04585" sboTerm="SBO:0000176" id="MAR04585" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04585" sboTerm="SBO:0000176" id="R_MAR04585" name="Isocitrate:NADP+ oxidoreductase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -173602,7 +173639,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04585">
+            <rdf:Description rdf:about="#R_MAR04585">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.42"/>
@@ -173615,19 +173652,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02662c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02662c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02183c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02183c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Idh"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04586" sboTerm="SBO:0000176" id="MAR04586" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04586" sboTerm="SBO:0000176" id="R_MAR04586" name="Isocitrate:NADP+ oxidoreductase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -173636,7 +173673,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04586">
+            <rdf:Description rdf:about="#R_MAR04586">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.42"/>
@@ -173649,19 +173686,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02662m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02662m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02183m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02183m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Idh"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04587" sboTerm="SBO:0000176" id="MAR04587" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04587" sboTerm="SBO:0000176" id="R_MAR04587" name="Isocitrate:NADP+ oxidoreductase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -173670,7 +173707,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04587">
+            <rdf:Description rdf:about="#R_MAR04587">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.42"/>
@@ -173683,19 +173720,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02662x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02662x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02183x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02183x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Idh"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04588" sboTerm="SBO:0000176" id="MAR04588" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04588" sboTerm="SBO:0000176" id="R_MAR04588" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -173704,7 +173741,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04588">
+            <rdf:Description rdf:about="#R_MAR04588">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.42"/>
@@ -173716,19 +173753,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02662m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02662m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02183m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02183m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Idh"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04589" sboTerm="SBO:0000176" id="MAR04589" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04589" sboTerm="SBO:0000176" id="R_MAR04589" name="isocitrate hydro-lyase (cis-aconitate-forming)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -173737,7 +173774,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04589">
+            <rdf:Description rdf:about="#R_MAR04589">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.3"/>
@@ -173751,14 +173788,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01580m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01580m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02183m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02183m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR04652" sboTerm="SBO:0000176" id="MAR04652" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04652" sboTerm="SBO:0000176" id="R_MAR04652" name="succinate:quinone oxidoreductase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -173767,7 +173804,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04652">
+            <rdf:Description rdf:about="#R_MAR04652">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.5.1"/>
@@ -173781,12 +173818,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01862m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03102m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01862m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03102m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02943m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03103m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02943m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03103m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:and>
@@ -173797,7 +173834,7 @@
           </fbc:and>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05297" sboTerm="SBO:0000176" id="MAR05297" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05297" sboTerm="SBO:0000176" id="R_MAR05297" name="2-oxoglutarate:NAD+ 2-oxidoreductase (CoA-succinylating)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -173806,7 +173843,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05297">
+            <rdf:Description rdf:about="#R_MAR05297">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.2.4.2"/>
@@ -173820,14 +173857,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01306m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01306m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01596m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02944m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01596m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02944m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:and>
@@ -173837,7 +173874,7 @@
           </fbc:and>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06411" sboTerm="SBO:0000176" id="MAR06411" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06411" sboTerm="SBO:0000176" id="R_MAR06411" name="2-oxoglutarate:[dihydrolipoyllysine-residue succinyltransferase]-lipoyllysine 2-oxidoreductase (decarboxylating, acceptor-succinylating)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -173846,7 +173883,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06411">
+            <rdf:Description rdf:about="#R_MAR06411">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.2.4.2"/>
@@ -173860,13 +173897,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01306m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02393m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01306m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02393m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01596m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02934m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01596m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02934m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -173875,7 +173912,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06413" sboTerm="SBO:0000176" id="MAR06413" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06413" sboTerm="SBO:0000176" id="R_MAR06413" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -173884,7 +173921,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06413">
+            <rdf:Description rdf:about="#R_MAR06413">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.2.4.2"/>
@@ -173898,12 +173935,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00765m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02393m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00765m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02393m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02934m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02984m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02934m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02984m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -173912,7 +173949,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06414" sboTerm="SBO:0000176" id="MAR06414" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06414" sboTerm="SBO:0000176" id="R_MAR06414" name="succinyl-CoA:enzyme N6-(dihydrolipoyl)lysine S-succinyltransferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -173921,7 +173958,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06414">
+            <rdf:Description rdf:about="#R_MAR06414">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.61"/>
@@ -173935,18 +173972,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02934m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02934m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01701m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02944m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01701m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02944m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG5214"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07704" sboTerm="SBO:0000176" id="MAR07704" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07704" sboTerm="SBO:0000176" id="R_MAR07704" name="Glyoxylate:oxygen oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -173954,7 +173991,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07704">
+            <rdf:Description rdf:about="#R_MAR07704">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.3.15"/>
@@ -173968,20 +174005,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02007x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02007x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02041x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02661x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02661x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Hao"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07706" sboTerm="SBO:0000176" id="MAR07706" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07706" sboTerm="SBO:0000176" id="R_MAR07706" name="glycolate:oxygen 2-oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -173989,7 +174026,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07706">
+            <rdf:Description rdf:about="#R_MAR07706">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.3.15"/>
@@ -174003,18 +174040,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01998x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01998x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02007x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02041x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02007x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Hao"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08743" sboTerm="SBO:0000176" id="MAR08743" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08743" sboTerm="SBO:0000176" id="R_MAR08743" name="succinate:FAD oxidoreductase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -174022,7 +174059,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08743">
+            <rdf:Description rdf:about="#R_MAR08743">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.5.1"/>
@@ -174036,12 +174073,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01803m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01862m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01803m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01862m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01802m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02943m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01802m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02943m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:and>
@@ -174052,7 +174089,7 @@
           </fbc:and>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08772" sboTerm="SBO:0000176" id="MAR08772" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08772" sboTerm="SBO:0000176" id="R_MAR08772" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -174060,7 +174097,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08772">
+            <rdf:Description rdf:about="#R_MAR08772">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.1.3"/>
@@ -174073,19 +174110,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01759c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01760c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01760c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG7328"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08773" sboTerm="SBO:0000176" id="MAR08773" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08773" sboTerm="SBO:0000176" id="R_MAR08773" name="L-xylulose 1-phosphate glycolaldehyde-lyase (glycerone-phosphate-forming)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -174093,7 +174130,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08773">
+            <rdf:Description rdf:about="#R_MAR08773">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.1.2.13"/>
@@ -174107,17 +174144,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01760c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01760c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01690c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01997c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01690c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01997c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Ald1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08774" sboTerm="SBO:0000176" id="MAR08774" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08774" sboTerm="SBO:0000176" id="R_MAR08774" name="hydroxypyruvate carboxy-lyase (glycolaldehyde-forming)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -174125,7 +174162,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08774">
+            <rdf:Description rdf:about="#R_MAR08774">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/HPYRDC"/>
@@ -174138,15 +174175,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02154c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02154c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01596c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01997c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01596c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01997c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08775" sboTerm="SBO:0000176" id="MAR08775" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08775" sboTerm="SBO:0000176" id="R_MAR08775" name="glycolaldehyde:NAD+ oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -174154,7 +174191,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08775">
+            <rdf:Description rdf:about="#R_MAR08775">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.2.1.4"/>
@@ -174171,14 +174208,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01997c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01997c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01998c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02553c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01998c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02553c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -174187,7 +174224,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08777" sboTerm="SBO:0000176" id="MAR08777" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08777" sboTerm="SBO:0000176" id="R_MAR08777" name="hydroxypyruvate carboxy-lyase (glycolaldehyde-forming)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -174195,7 +174232,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08777">
+            <rdf:Description rdf:about="#R_MAR08777">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/HPYRDCm"/>
@@ -174208,15 +174245,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02154m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02154m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01596m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01997m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01596m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01997m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08778" sboTerm="SBO:0000176" id="MAR08778" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08778" sboTerm="SBO:0000176" id="R_MAR08778" name="glycolaldehyde:NAD+ oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -174224,7 +174261,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08778">
+            <rdf:Description rdf:about="#R_MAR08778">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.2.1.3"/>
@@ -174240,14 +174277,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01997m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01997m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01998m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01998m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -174255,7 +174292,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08779" sboTerm="SBO:0000176" id="MAR08779" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08779" sboTerm="SBO:0000176" id="R_MAR08779" name="glycolate:NADP+ oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -174263,7 +174300,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08779">
+            <rdf:Description rdf:about="#R_MAR08779">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GLYCLTDym"/>
@@ -174276,19 +174313,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02007m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02007m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01998m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01998m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG1236"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08780" sboTerm="SBO:0000176" id="MAR08780" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08780" sboTerm="SBO:0000176" id="R_MAR08780" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -174296,7 +174333,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08780">
+            <rdf:Description rdf:about="#R_MAR08780">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.27"/>
@@ -174309,14 +174346,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02007c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02007c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02553c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02661c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02553c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02661c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -174325,7 +174362,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08781" sboTerm="SBO:0000176" id="MAR08781" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08781" sboTerm="SBO:0000176" id="R_MAR08781" name="ATP:(R)-glycerate 2-phosphotransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -174333,7 +174370,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08781">
+            <rdf:Description rdf:about="#R_MAR08781">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GLYCK2"/>
@@ -174346,16 +174383,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01982c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01982c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00674c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00674c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08782" sboTerm="SBO:0000176" id="MAR08782" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08782" sboTerm="SBO:0000176" id="R_MAR08782" name="D-Glycerate:NAD+ 2-oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -174363,7 +174400,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08782">
+            <rdf:Description rdf:about="#R_MAR08782">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.79"/>
@@ -174378,19 +174415,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02154c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02154c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01982c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01982c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG1236"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03975" sboTerm="SBO:0000176" id="MAR03975" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03975" sboTerm="SBO:0000176" id="R_MAR03975" name="diphosphate phosphohydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -174399,7 +174436,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03975">
+            <rdf:Description rdf:about="#R_MAR03975">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.6.1.1"/>
@@ -174415,12 +174452,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751r" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751r" stoichiometry="2" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -174428,7 +174465,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03977" sboTerm="SBO:0000176" id="MAR03977" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03977" sboTerm="SBO:0000176" id="R_MAR03977" name="diphosphate phosphohydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -174437,7 +174474,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03977">
+            <rdf:Description rdf:about="#R_MAR03977">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.6.1.1"/>
@@ -174453,12 +174490,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="2" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -174466,7 +174503,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03979" sboTerm="SBO:0000176" id="MAR03979" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03979" sboTerm="SBO:0000176" id="R_MAR03979" name="diphosphate phosphohydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -174475,7 +174512,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03979">
+            <rdf:Description rdf:about="#R_MAR03979">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.6.1.1"/>
@@ -174490,12 +174527,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751x" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02039x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751x" stoichiometry="2" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -174503,7 +174540,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06911" sboTerm="SBO:0000176" id="MAR06911" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06911" sboTerm="SBO:0000176" id="R_MAR06911" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -174511,7 +174548,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06911">
+            <rdf:Description rdf:about="#R_MAR06911">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.5.5.1"/>
@@ -174523,12 +174560,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01803m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03103m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01803m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03103m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01802m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03102m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01802m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03102m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -174537,7 +174574,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06912" sboTerm="SBO:0000176" id="MAR06912" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06912" sboTerm="SBO:0000176" id="R_MAR06912" name="diphosphate phosphohydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -174546,7 +174583,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06912">
+            <rdf:Description rdf:about="#R_MAR06912">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.6.1.1"/>
@@ -174562,12 +174599,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751m" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751m" stoichiometry="2" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -174575,7 +174612,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06914" sboTerm="SBO:0000185" id="MAR06914" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06914" sboTerm="SBO:0000185" id="R_MAR06914" name="ferrocytochrome-c:oxygen oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 2</p>
@@ -174584,7 +174621,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06914">
+            <rdf:Description rdf:about="#R_MAR06914">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.9.3.1"/>
@@ -174598,17 +174635,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01826m" stoichiometry="4" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="8" constant="true"/>
-          <speciesReference species="MAM02630m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01826m" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="8" constant="true"/>
+          <speciesReference species="M_MAM02630m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01824m" stoichiometry="4" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02039i" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM01824m" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02039i" stoichiometry="4" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR06916" sboTerm="SBO:0000185" id="MAR06916" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06916" sboTerm="SBO:0000185" id="R_MAR06916" name="ATP phosphohydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 2</p>
@@ -174617,7 +174654,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06916">
+            <rdf:Description rdf:about="#R_MAR06916">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.6.1.3"/>
@@ -174643,17 +174680,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01285m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039i" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM01285m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039i" stoichiometry="3" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01371m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR06918" sboTerm="SBO:0000185" id="MAR06918" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06918" sboTerm="SBO:0000185" id="R_MAR06918" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 2</p>
@@ -174662,7 +174699,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06918">
+            <rdf:Description rdf:about="#R_MAR06918">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.10.2.2"/>
@@ -174676,17 +174713,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01824m" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03102m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01824m" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03102m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01826m" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03103m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039i" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM01826m" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03103m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039i" stoichiometry="4" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR06921" sboTerm="SBO:0000185" id="MAR06921" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06921" sboTerm="SBO:0000185" id="R_MAR06921" name="NADH:ubiquinone oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 2</p>
@@ -174695,7 +174732,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06921">
+            <rdf:Description rdf:about="#R_MAR06921">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.6.5.3"/>
@@ -174709,17 +174746,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039m" stoichiometry="5" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03103m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="5" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03103m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02552m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03102m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039i" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03102m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039i" stoichiometry="4" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03960" sboTerm="SBO:0000176" id="MAR03960" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03960" sboTerm="SBO:0000176" id="R_MAR03960" name="superoxide:superoxide oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -174728,7 +174765,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03960">
+            <rdf:Description rdf:about="#R_MAR03960">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.15.1.1"/>
@@ -174742,12 +174779,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02631c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02631c" stoichiometry="2" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02041c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -174758,7 +174795,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03980" sboTerm="SBO:0000176" id="MAR03980" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03980" sboTerm="SBO:0000176" id="R_MAR03980" name="hydrogen-peroxide:hydrogen-peroxide oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -174767,7 +174804,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03980">
+            <rdf:Description rdf:about="#R_MAR03980">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.11.1.6"/>
@@ -174783,17 +174820,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02041c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02041c" stoichiometry="2" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Cat"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03982" sboTerm="SBO:0000176" id="MAR03982" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03982" sboTerm="SBO:0000176" id="R_MAR03982" name="hydrogen-peroxide:hydrogen-peroxide oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -174802,7 +174839,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03982">
+            <rdf:Description rdf:about="#R_MAR03982">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.11.1.6"/>
@@ -174818,17 +174855,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02041m" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02041m" stoichiometry="2" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040m" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02630m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02630m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Cat"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04767" sboTerm="SBO:0000176" id="MAR04767" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04767" sboTerm="SBO:0000176" id="R_MAR04767" name="bilirubin-glucuronoside:bilirubin-glucuronoside D-glucuronosyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -174836,7 +174873,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04767">
+            <rdf:Description rdf:about="#R_MAR04767">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.95"/>
@@ -174849,14 +174886,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01396r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01397r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01396r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01397r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01398r" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01398r" stoichiometry="2" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR06608" sboTerm="SBO:0000176" id="MAR06608" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06608" sboTerm="SBO:0000176" id="R_MAR06608" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -174864,7 +174901,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#meta_MAR06608">
+            <rdf:Description rdf:about="#meta_R_MAR06608">
               <bqbiol:is>
                 <rdf:Bag/>
               </bqbiol:is>
@@ -174872,13 +174909,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02147c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02147c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02149c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02149c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08409" sboTerm="SBO:0000176" id="MAR08409" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08409" sboTerm="SBO:0000176" id="R_MAR08409" name="superoxide:superoxide oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -174886,7 +174923,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08409">
+            <rdf:Description rdf:about="#R_MAR08409">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.15.1.1"/>
@@ -174902,12 +174939,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02631e" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02631e" stoichiometry="2" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02041e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -174916,7 +174953,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08410" sboTerm="SBO:0000176" id="MAR08410" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08410" sboTerm="SBO:0000176" id="R_MAR08410" name="superoxide:superoxide oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -174924,7 +174961,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08410">
+            <rdf:Description rdf:about="#R_MAR08410">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.15.1.1"/>
@@ -174938,18 +174975,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039m" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02631m" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02631m" stoichiometry="2" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02041m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Sod2"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08413" sboTerm="SBO:0000176" id="MAR08413" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08413" sboTerm="SBO:0000176" id="R_MAR08413" name="superoxide:superoxide oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -174957,7 +174994,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08413">
+            <rdf:Description rdf:about="#R_MAR08413">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.15.1.1"/>
@@ -174973,18 +175010,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039n" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02631n" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02039n" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02631n" stoichiometry="2" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02041n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630n" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Sod1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08415" sboTerm="SBO:0000176" id="MAR08415" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08415" sboTerm="SBO:0000176" id="R_MAR08415" name="superoxide:superoxide oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -174992,7 +175029,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08415">
+            <rdf:Description rdf:about="#R_MAR08415">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.15.1.1"/>
@@ -175008,18 +175045,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039x" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02631x" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02039x" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02631x" stoichiometry="2" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02041x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Sod1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00188" sboTerm="SBO:0000176" id="MAR00188" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00188" sboTerm="SBO:0000176" id="R_MAR00188" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -175027,7 +175064,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00188">
+            <rdf:Description rdf:about="#R_MAR00188">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.3"/>
@@ -175039,14 +175076,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01334c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02345c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02345c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02344c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02344c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -175057,7 +175094,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00192" sboTerm="SBO:0000176" id="MAR00192" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00192" sboTerm="SBO:0000176" id="R_MAR00192" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -175065,7 +175102,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00192">
+            <rdf:Description rdf:about="#R_MAR00192">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.3"/>
@@ -175076,14 +175113,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01334c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03050c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03050c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03051c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03051c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -175094,7 +175131,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00196" sboTerm="SBO:0000176" id="MAR00196" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00196" sboTerm="SBO:0000176" id="R_MAR00196" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -175102,7 +175139,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00196">
+            <rdf:Description rdf:about="#R_MAR00196">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.3"/>
@@ -175115,14 +175152,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01334c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02495c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02495c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02494c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02494c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -175133,7 +175170,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00200" sboTerm="SBO:0000176" id="MAR00200" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00200" sboTerm="SBO:0000176" id="R_MAR00200" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -175141,7 +175178,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00200">
+            <rdf:Description rdf:about="#R_MAR00200">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.3"/>
@@ -175153,14 +175190,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00128c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00128c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00129c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01334c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00129c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -175171,7 +175208,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00204" sboTerm="SBO:0000176" id="MAR00204" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00204" sboTerm="SBO:0000176" id="R_MAR00204" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -175179,7 +175216,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00204">
+            <rdf:Description rdf:about="#R_MAR00204">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.3"/>
@@ -175190,14 +175227,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00117c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00117c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00118c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01334c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00118c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -175208,7 +175245,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00209" sboTerm="SBO:0000176" id="MAR00209" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00209" sboTerm="SBO:0000176" id="R_MAR00209" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -175216,7 +175253,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00209">
+            <rdf:Description rdf:about="#R_MAR00209">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.3"/>
@@ -175227,14 +175264,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01141c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01334c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01141c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02745c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02745c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -175245,7 +175282,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00213" sboTerm="SBO:0000176" id="MAR00213" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00213" sboTerm="SBO:0000176" id="R_MAR00213" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -175253,7 +175290,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00213">
+            <rdf:Description rdf:about="#R_MAR00213">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.3"/>
@@ -175266,14 +175303,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01334c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02689c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02689c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02690c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02690c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -175284,7 +175321,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00217" sboTerm="SBO:0000176" id="MAR00217" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00217" sboTerm="SBO:0000176" id="R_MAR00217" name="Palmitate:CoA ligase (AMP-forming)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -175293,7 +175330,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00217">
+            <rdf:Description rdf:about="#R_MAR00217">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.3"/>
@@ -175307,14 +175344,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01334c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02678c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02678c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02674c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02674c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -175325,7 +175362,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00226" sboTerm="SBO:0000176" id="MAR00226" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00226" sboTerm="SBO:0000176" id="R_MAR00226" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -175334,7 +175371,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00226">
+            <rdf:Description rdf:about="#R_MAR00226">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.3"/>
@@ -175346,14 +175383,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01334c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02677c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02677c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02675c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02675c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -175364,7 +175401,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00233" sboTerm="SBO:0000176" id="MAR00233" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00233" sboTerm="SBO:0000176" id="R_MAR00233" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -175372,7 +175409,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00233">
+            <rdf:Description rdf:about="#R_MAR00233">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.3"/>
@@ -175384,14 +175421,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01191c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01334c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01191c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01197c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01197c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -175402,7 +175439,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00237" sboTerm="SBO:0000176" id="MAR00237" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00237" sboTerm="SBO:0000176" id="R_MAR00237" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -175410,7 +175447,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00237">
+            <rdf:Description rdf:about="#R_MAR00237">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.3"/>
@@ -175422,14 +175459,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01334c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02101c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02101c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02456c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02456c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -175440,7 +175477,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00241" sboTerm="SBO:0000176" id="MAR00241" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00241" sboTerm="SBO:0000176" id="R_MAR00241" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -175448,7 +175485,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00241">
+            <rdf:Description rdf:about="#R_MAR00241">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.3"/>
@@ -175459,14 +175496,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00003c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00003c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00004c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01334c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00004c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -175477,7 +175514,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00245" sboTerm="SBO:0000176" id="MAR00245" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00245" sboTerm="SBO:0000176" id="R_MAR00245" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -175485,7 +175522,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00245">
+            <rdf:Description rdf:about="#R_MAR00245">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.3"/>
@@ -175497,14 +175534,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01237c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01334c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01237c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01238c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01238c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -175515,7 +175552,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00249" sboTerm="SBO:0000176" id="MAR00249" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00249" sboTerm="SBO:0000176" id="R_MAR00249" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -175524,7 +175561,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00249">
+            <rdf:Description rdf:about="#R_MAR00249">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.3"/>
@@ -175535,14 +175572,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01334c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02941c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02941c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02938c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02938c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -175553,7 +175590,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00255" sboTerm="SBO:0000176" id="MAR00255" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00255" sboTerm="SBO:0000176" id="R_MAR00255" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -175561,7 +175598,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00255">
+            <rdf:Description rdf:about="#R_MAR00255">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.3"/>
@@ -175573,14 +175610,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00019c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00019c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00020c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01334c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00020c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -175591,7 +175628,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00259" sboTerm="SBO:0000176" id="MAR00259" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00259" sboTerm="SBO:0000176" id="R_MAR00259" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -175599,7 +175636,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00259">
+            <rdf:Description rdf:about="#R_MAR00259">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.3"/>
@@ -175612,14 +175649,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01334c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01586c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01586c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01585c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01585c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -175630,7 +175667,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00263" sboTerm="SBO:0000176" id="MAR00263" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00263" sboTerm="SBO:0000176" id="R_MAR00263" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -175639,7 +175676,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00263">
+            <rdf:Description rdf:about="#R_MAR00263">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.3"/>
@@ -175652,14 +175689,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02646c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02646c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01334c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02647c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02647c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -175670,7 +175707,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00267" sboTerm="SBO:0000176" id="MAR00267" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00267" sboTerm="SBO:0000176" id="R_MAR00267" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -175678,7 +175715,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00267">
+            <rdf:Description rdf:about="#R_MAR00267">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.3"/>
@@ -175689,14 +175726,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00127c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01334c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00127c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01778c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01778c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -175707,7 +175744,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00271" sboTerm="SBO:0000176" id="MAR00271" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00271" sboTerm="SBO:0000176" id="R_MAR00271" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -175715,7 +175752,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00271">
+            <rdf:Description rdf:about="#R_MAR00271">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.3"/>
@@ -175726,14 +175763,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00020c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01334c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00020c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00115c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00115c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -175744,7 +175781,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00275" sboTerm="SBO:0000176" id="MAR00275" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00275" sboTerm="SBO:0000176" id="R_MAR00275" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -175752,7 +175789,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00275">
+            <rdf:Description rdf:about="#R_MAR00275">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.3"/>
@@ -175764,14 +175801,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00104c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00104c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00106c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01334c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00106c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -175782,7 +175819,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00279" sboTerm="SBO:0000176" id="MAR00279" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00279" sboTerm="SBO:0000176" id="R_MAR00279" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -175790,7 +175827,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00279">
+            <rdf:Description rdf:about="#R_MAR00279">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.3"/>
@@ -175801,14 +175838,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01334c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02612c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02612c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02613c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02613c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -175819,7 +175856,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00283" sboTerm="SBO:0000176" id="MAR00283" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00283" sboTerm="SBO:0000176" id="R_MAR00283" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -175827,7 +175864,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00283">
+            <rdf:Description rdf:about="#R_MAR00283">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.3"/>
@@ -175842,14 +175879,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01334c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01773c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01773c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01771c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01771c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -175860,7 +175897,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00289" sboTerm="SBO:0000176" id="MAR00289" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00289" sboTerm="SBO:0000176" id="R_MAR00289" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -175868,7 +175905,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00289">
+            <rdf:Description rdf:about="#R_MAR00289">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.3"/>
@@ -175879,14 +175916,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00017c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00017c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00018c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01334c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00018c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -175897,7 +175934,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00293" sboTerm="SBO:0000176" id="MAR00293" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00293" sboTerm="SBO:0000176" id="R_MAR00293" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -175905,7 +175942,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00293">
+            <rdf:Description rdf:about="#R_MAR00293">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.3"/>
@@ -175917,14 +175954,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00007c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01334c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00007c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01584c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01584c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -175935,7 +175972,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00297" sboTerm="SBO:0000176" id="MAR00297" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00297" sboTerm="SBO:0000176" id="R_MAR00297" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -175943,7 +175980,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00297">
+            <rdf:Description rdf:about="#R_MAR00297">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.3"/>
@@ -175955,14 +175992,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01235c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01235c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01236c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01334c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01236c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -175973,7 +176010,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00301" sboTerm="SBO:0000176" id="MAR00301" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00301" sboTerm="SBO:0000176" id="R_MAR00301" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -175981,7 +176018,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00301">
+            <rdf:Description rdf:about="#R_MAR00301">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.3"/>
@@ -175993,14 +176030,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00123c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01334c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00123c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01207c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01207c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -176011,7 +176048,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00305" sboTerm="SBO:0000176" id="MAR00305" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00305" sboTerm="SBO:0000176" id="R_MAR00305" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -176019,7 +176056,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00305">
+            <rdf:Description rdf:about="#R_MAR00305">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.3"/>
@@ -176030,14 +176067,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00101c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01334c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00101c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02457c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02457c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -176048,7 +176085,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00309" sboTerm="SBO:0000176" id="MAR00309" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00309" sboTerm="SBO:0000176" id="R_MAR00309" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -176056,7 +176093,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00309">
+            <rdf:Description rdf:about="#R_MAR00309">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.3"/>
@@ -176067,14 +176104,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01334c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02052c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02052c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02053c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02053c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -176085,7 +176122,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00313" sboTerm="SBO:0000176" id="MAR00313" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00313" sboTerm="SBO:0000176" id="R_MAR00313" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -176093,7 +176130,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00313">
+            <rdf:Description rdf:about="#R_MAR00313">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.3"/>
@@ -176105,14 +176142,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01334c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01725c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01725c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01373c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01373c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -176123,7 +176160,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00319" sboTerm="SBO:0000176" id="MAR00319" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00319" sboTerm="SBO:0000176" id="R_MAR00319" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -176131,7 +176168,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00319">
+            <rdf:Description rdf:about="#R_MAR00319">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.3"/>
@@ -176143,14 +176180,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00016c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01334c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00016c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01583c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01583c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -176161,7 +176198,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00323" sboTerm="SBO:0000176" id="MAR00323" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00323" sboTerm="SBO:0000176" id="R_MAR00323" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -176169,7 +176206,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00323">
+            <rdf:Description rdf:about="#R_MAR00323">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.3"/>
@@ -176180,14 +176217,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00006c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01334c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00006c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01582c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01582c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -176198,7 +176235,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00327" sboTerm="SBO:0000176" id="MAR00327" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00327" sboTerm="SBO:0000176" id="R_MAR00327" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -176206,7 +176243,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00327">
+            <rdf:Description rdf:about="#R_MAR00327">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.3"/>
@@ -176217,14 +176254,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01334c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03047c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03047c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03045c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03045c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -176235,7 +176272,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00331" sboTerm="SBO:0000176" id="MAR00331" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00331" sboTerm="SBO:0000176" id="R_MAR00331" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -176243,7 +176280,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00331">
+            <rdf:Description rdf:about="#R_MAR00331">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.3"/>
@@ -176254,14 +176291,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01334c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02971c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02971c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02385c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02385c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -176272,7 +176309,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00337" sboTerm="SBO:0000176" id="MAR00337" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00337" sboTerm="SBO:0000176" id="R_MAR00337" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -176280,7 +176317,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00337">
+            <rdf:Description rdf:about="#R_MAR00337">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.3"/>
@@ -176291,14 +176328,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00025c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01334c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00025c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02564c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02564c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -176309,7 +176346,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00341" sboTerm="SBO:0000176" id="MAR00341" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00341" sboTerm="SBO:0000176" id="R_MAR00341" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -176317,7 +176354,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00341">
+            <rdf:Description rdf:about="#R_MAR00341">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.3"/>
@@ -176328,14 +176365,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01334c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02110c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02110c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01432c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01432c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -176346,7 +176383,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00345" sboTerm="SBO:0000176" id="MAR00345" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00345" sboTerm="SBO:0000176" id="R_MAR00345" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -176354,7 +176391,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00345">
+            <rdf:Description rdf:about="#R_MAR00345">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.3"/>
@@ -176365,14 +176402,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01334c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02112c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02112c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03153c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03153c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -176383,7 +176420,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00349" sboTerm="SBO:0000176" id="MAR00349" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00349" sboTerm="SBO:0000176" id="R_MAR00349" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -176391,7 +176428,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00349">
+            <rdf:Description rdf:about="#R_MAR00349">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.3"/>
@@ -176403,14 +176440,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01334c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02390c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02390c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02389c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02389c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -176421,7 +176458,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00353" sboTerm="SBO:0000176" id="MAR00353" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00353" sboTerm="SBO:0000176" id="R_MAR00353" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -176429,7 +176466,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00353">
+            <rdf:Description rdf:about="#R_MAR00353">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.3"/>
@@ -176440,14 +176477,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00108c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01334c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00108c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02939c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02939c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -176458,7 +176495,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00357" sboTerm="SBO:0000176" id="MAR00357" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00357" sboTerm="SBO:0000176" id="R_MAR00357" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -176466,7 +176503,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00357">
+            <rdf:Description rdf:about="#R_MAR00357">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.3"/>
@@ -176477,14 +176514,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00125c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01334c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00125c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02648c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02648c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -176495,7 +176532,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00361" sboTerm="SBO:0000176" id="MAR00361" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00361" sboTerm="SBO:0000176" id="R_MAR00361" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -176504,7 +176541,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00361">
+            <rdf:Description rdf:about="#R_MAR00361">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.3"/>
@@ -176515,14 +176552,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00103c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01334c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00103c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01784c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01784c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -176533,7 +176570,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00365" sboTerm="SBO:0000176" id="MAR00365" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00365" sboTerm="SBO:0000176" id="R_MAR00365" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -176541,7 +176578,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00365">
+            <rdf:Description rdf:about="#R_MAR00365">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.3"/>
@@ -176553,14 +176590,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00121c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01334c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00121c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01741c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01741c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -176571,7 +176608,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00369" sboTerm="SBO:0000176" id="MAR00369" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00369" sboTerm="SBO:0000176" id="R_MAR00369" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -176579,7 +176616,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00369">
+            <rdf:Description rdf:about="#R_MAR00369">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.3"/>
@@ -176590,14 +176627,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00135c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00135c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00134c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01334c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00134c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -176608,7 +176645,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00373" sboTerm="SBO:0000176" id="MAR00373" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00373" sboTerm="SBO:0000176" id="R_MAR00373" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -176617,7 +176654,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00373">
+            <rdf:Description rdf:about="#R_MAR00373">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.3"/>
@@ -176628,14 +176665,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00114c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00114c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00113c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01334c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00113c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -176646,7 +176683,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00377" sboTerm="SBO:0000176" id="MAR00377" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00377" sboTerm="SBO:0000176" id="R_MAR00377" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -176654,7 +176691,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00377">
+            <rdf:Description rdf:about="#R_MAR00377">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.3"/>
@@ -176666,14 +176703,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00095c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01334c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00095c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01689c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01689c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -176684,7 +176721,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00381" sboTerm="SBO:0000176" id="MAR00381" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00381" sboTerm="SBO:0000176" id="R_MAR00381" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -176692,7 +176729,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00381">
+            <rdf:Description rdf:about="#R_MAR00381">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.3"/>
@@ -176703,14 +176740,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00010c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00010c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00012c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01334c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00012c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -176721,7 +176758,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00385" sboTerm="SBO:0000176" id="MAR00385" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00385" sboTerm="SBO:0000176" id="R_MAR00385" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -176729,7 +176766,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00385">
+            <rdf:Description rdf:about="#R_MAR00385">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.3"/>
@@ -176740,14 +176777,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00341c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00341c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00343c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01334c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00343c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -176758,7 +176795,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00389" sboTerm="SBO:0000176" id="MAR00389" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00389" sboTerm="SBO:0000176" id="R_MAR00389" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -176766,7 +176803,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00389">
+            <rdf:Description rdf:about="#R_MAR00389">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.3"/>
@@ -176777,14 +176814,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00260c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00260c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00262c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01334c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00262c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -176795,7 +176832,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00393" sboTerm="SBO:0000176" id="MAR00393" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00393" sboTerm="SBO:0000176" id="R_MAR00393" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -176803,7 +176840,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00393">
+            <rdf:Description rdf:about="#R_MAR00393">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.3"/>
@@ -176814,14 +176851,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00315c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00315c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00317c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01334c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00317c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -176832,7 +176869,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00397" sboTerm="SBO:0000176" id="MAR00397" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00397" sboTerm="SBO:0000176" id="R_MAR00397" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -176841,7 +176878,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00397">
+            <rdf:Description rdf:about="#R_MAR00397">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.3"/>
@@ -176854,14 +176891,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01334c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02391c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02391c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02387c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02387c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -176872,7 +176909,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00401" sboTerm="SBO:0000176" id="MAR00401" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00401" sboTerm="SBO:0000176" id="R_MAR00401" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -176881,7 +176918,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00401">
+            <rdf:Description rdf:about="#R_MAR00401">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.3"/>
@@ -176893,14 +176930,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01334c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01934c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01934c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01932c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01932c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -176911,7 +176948,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00405" sboTerm="SBO:0000176" id="MAR00405" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00405" sboTerm="SBO:0000176" id="R_MAR00405" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -176919,7 +176956,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00405">
+            <rdf:Description rdf:about="#R_MAR00405">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.3"/>
@@ -176931,14 +176968,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01334c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01697c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01697c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01696c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01696c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -176949,7 +176986,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00409" sboTerm="SBO:0000176" id="MAR00409" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00409" sboTerm="SBO:0000176" id="R_MAR00409" name="Arachidonate:CoA ligase (AMP-forming)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -176958,7 +176995,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00409">
+            <rdf:Description rdf:about="#R_MAR00409">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.3"/>
@@ -176972,14 +177009,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01334c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01364c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01364c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01362c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01362c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -176990,7 +177027,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00413" sboTerm="SBO:0000176" id="MAR00413" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00413" sboTerm="SBO:0000176" id="R_MAR00413" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -176998,7 +177035,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00413">
+            <rdf:Description rdf:about="#R_MAR00413">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.3"/>
@@ -177010,14 +177047,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00119c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01334c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00119c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01291c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01291c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -177028,7 +177065,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00417" sboTerm="SBO:0000176" id="MAR00417" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00417" sboTerm="SBO:0000176" id="R_MAR00417" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -177036,7 +177073,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00417">
+            <rdf:Description rdf:about="#R_MAR00417">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.3"/>
@@ -177047,14 +177084,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00132c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00132c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00131c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01334c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00131c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -177065,7 +177102,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00421" sboTerm="SBO:0000176" id="MAR00421" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00421" sboTerm="SBO:0000176" id="R_MAR00421" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -177074,7 +177111,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00421">
+            <rdf:Description rdf:about="#R_MAR00421">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.3"/>
@@ -177085,14 +177122,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00111c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00111c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00110c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01334c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00110c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -177103,7 +177140,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00425" sboTerm="SBO:0000176" id="MAR00425" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00425" sboTerm="SBO:0000176" id="R_MAR00425" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -177111,7 +177148,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00425">
+            <rdf:Description rdf:about="#R_MAR00425">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.3"/>
@@ -177123,14 +177160,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00094c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00094c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00093c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01334c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00093c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -177141,7 +177178,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00429" sboTerm="SBO:0000176" id="MAR00429" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00429" sboTerm="SBO:0000176" id="R_MAR00429" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -177149,7 +177186,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00429">
+            <rdf:Description rdf:about="#R_MAR00429">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.3"/>
@@ -177161,14 +177198,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00008c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00008c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00009c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01334c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00009c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -177179,7 +177216,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00433" sboTerm="SBO:0000176" id="MAR00433" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00433" sboTerm="SBO:0000176" id="R_MAR00433" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -177187,7 +177224,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00433">
+            <rdf:Description rdf:about="#R_MAR00433">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.3"/>
@@ -177198,14 +177235,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00021c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00021c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00023c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01334c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00023c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -177216,7 +177253,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00437" sboTerm="SBO:0000176" id="MAR00437" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00437" sboTerm="SBO:0000176" id="R_MAR00437" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -177224,7 +177261,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00437">
+            <rdf:Description rdf:about="#R_MAR00437">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.3"/>
@@ -177235,14 +177272,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00264c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01334c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00264c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00265c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00265c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -177253,7 +177290,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02942" sboTerm="SBO:0000176" id="MAR02942" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02942" sboTerm="SBO:0000176" id="R_MAR02942" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -177261,7 +177298,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02942">
+            <rdf:Description rdf:about="#R_MAR02942">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.3"/>
@@ -177272,14 +177309,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01334r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02345r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02345r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01371r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02344r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02344r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -177290,7 +177327,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02943" sboTerm="SBO:0000176" id="MAR02943" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02943" sboTerm="SBO:0000176" id="R_MAR02943" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -177298,7 +177335,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02943">
+            <rdf:Description rdf:about="#R_MAR02943">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.3"/>
@@ -177309,14 +177346,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01334r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03050r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03050r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01371r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03051r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03051r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -177327,7 +177364,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02944" sboTerm="SBO:0000176" id="MAR02944" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02944" sboTerm="SBO:0000176" id="R_MAR02944" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -177335,7 +177372,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02944">
+            <rdf:Description rdf:about="#R_MAR02944">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.3"/>
@@ -177346,14 +177383,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01334r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02495r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02495r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01371r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02494r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02494r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -177364,7 +177401,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02945" sboTerm="SBO:0000176" id="MAR02945" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02945" sboTerm="SBO:0000176" id="R_MAR02945" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -177372,7 +177409,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02945">
+            <rdf:Description rdf:about="#R_MAR02945">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.3"/>
@@ -177383,14 +177420,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01141r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01334r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01141r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01371r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02745r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02745r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -177401,7 +177438,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02946" sboTerm="SBO:0000176" id="MAR02946" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02946" sboTerm="SBO:0000176" id="R_MAR02946" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -177409,7 +177446,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02946">
+            <rdf:Description rdf:about="#R_MAR02946">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.3"/>
@@ -177420,14 +177457,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00128r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00128r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00129r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01334r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00129r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -177438,7 +177475,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02947" sboTerm="SBO:0000176" id="MAR02947" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02947" sboTerm="SBO:0000176" id="R_MAR02947" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -177446,7 +177483,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02947">
+            <rdf:Description rdf:about="#R_MAR02947">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.3"/>
@@ -177457,14 +177494,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00117r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00117r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00118r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01334r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00118r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -177475,7 +177512,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02948" sboTerm="SBO:0000176" id="MAR02948" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02948" sboTerm="SBO:0000176" id="R_MAR02948" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -177483,7 +177520,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02948">
+            <rdf:Description rdf:about="#R_MAR02948">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.3"/>
@@ -177494,14 +177531,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01334r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02689r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02689r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01371r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02690r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02690r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -177512,7 +177549,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02949" sboTerm="SBO:0000176" id="MAR02949" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02949" sboTerm="SBO:0000176" id="R_MAR02949" name="Palmitate:CoA ligase (AMP-forming)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -177521,7 +177558,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02949">
+            <rdf:Description rdf:about="#R_MAR02949">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.3"/>
@@ -177534,14 +177571,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01334r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02678r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02678r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01371r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02674r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02674r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -177552,7 +177589,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02951" sboTerm="SBO:0000176" id="MAR02951" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02951" sboTerm="SBO:0000176" id="R_MAR02951" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -177560,7 +177597,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02951">
+            <rdf:Description rdf:about="#R_MAR02951">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.3"/>
@@ -177571,14 +177608,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01191r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01334r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01191r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01197r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01197r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -177589,7 +177626,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02952" sboTerm="SBO:0000176" id="MAR02952" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02952" sboTerm="SBO:0000176" id="R_MAR02952" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -177598,7 +177635,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02952">
+            <rdf:Description rdf:about="#R_MAR02952">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.3"/>
@@ -177610,14 +177647,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01334r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02677r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02677r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01371r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02675r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02675r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -177628,7 +177665,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02954" sboTerm="SBO:0000176" id="MAR02954" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02954" sboTerm="SBO:0000176" id="R_MAR02954" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -177636,7 +177673,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02954">
+            <rdf:Description rdf:about="#R_MAR02954">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.3"/>
@@ -177647,14 +177684,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01334r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02101r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02101r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01371r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02456r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02456r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -177665,7 +177702,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02955" sboTerm="SBO:0000176" id="MAR02955" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02955" sboTerm="SBO:0000176" id="R_MAR02955" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -177673,7 +177710,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02955">
+            <rdf:Description rdf:about="#R_MAR02955">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.3"/>
@@ -177684,14 +177721,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00003r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00003r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00004r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01334r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00004r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -177702,7 +177739,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02956" sboTerm="SBO:0000176" id="MAR02956" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02956" sboTerm="SBO:0000176" id="R_MAR02956" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -177710,7 +177747,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02956">
+            <rdf:Description rdf:about="#R_MAR02956">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.3"/>
@@ -177721,14 +177758,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01237r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01334r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01237r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01238r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01238r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -177739,7 +177776,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02957" sboTerm="SBO:0000176" id="MAR02957" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02957" sboTerm="SBO:0000176" id="R_MAR02957" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -177748,7 +177785,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02957">
+            <rdf:Description rdf:about="#R_MAR02957">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.3"/>
@@ -177759,14 +177796,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01334r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02941r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02941r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01371r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02938r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02938r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -177777,7 +177814,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02959" sboTerm="SBO:0000176" id="MAR02959" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02959" sboTerm="SBO:0000176" id="R_MAR02959" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -177786,7 +177823,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02959">
+            <rdf:Description rdf:about="#R_MAR02959">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.3"/>
@@ -177798,14 +177835,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02646r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02646r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01334r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02647r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02647r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -177816,7 +177853,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02961" sboTerm="SBO:0000176" id="MAR02961" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02961" sboTerm="SBO:0000176" id="R_MAR02961" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -177824,7 +177861,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02961">
+            <rdf:Description rdf:about="#R_MAR02961">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.3"/>
@@ -177835,14 +177872,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00127r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01334r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00127r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01371r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01778r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01778r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -177853,7 +177890,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02962" sboTerm="SBO:0000176" id="MAR02962" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02962" sboTerm="SBO:0000176" id="R_MAR02962" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -177861,7 +177898,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02962">
+            <rdf:Description rdf:about="#R_MAR02962">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.3"/>
@@ -177872,14 +177909,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00019r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00019r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00020r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01334r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00020r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -177890,7 +177927,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02963" sboTerm="SBO:0000176" id="MAR02963" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02963" sboTerm="SBO:0000176" id="R_MAR02963" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -177898,7 +177935,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02963">
+            <rdf:Description rdf:about="#R_MAR02963">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.3"/>
@@ -177909,14 +177946,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01334r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01586r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01586r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01371r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01585r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01585r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -177927,7 +177964,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02964" sboTerm="SBO:0000176" id="MAR02964" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02964" sboTerm="SBO:0000176" id="R_MAR02964" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -177935,7 +177972,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02964">
+            <rdf:Description rdf:about="#R_MAR02964">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.3"/>
@@ -177946,14 +177983,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00104r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00104r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00106r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01334r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00106r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -177964,7 +178001,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02965" sboTerm="SBO:0000176" id="MAR02965" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02965" sboTerm="SBO:0000176" id="R_MAR02965" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -177972,7 +178009,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02965">
+            <rdf:Description rdf:about="#R_MAR02965">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.3"/>
@@ -177983,14 +178020,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01334r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02612r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02612r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01371r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02613r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02613r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -178001,7 +178038,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02966" sboTerm="SBO:0000176" id="MAR02966" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02966" sboTerm="SBO:0000176" id="R_MAR02966" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -178009,7 +178046,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02966">
+            <rdf:Description rdf:about="#R_MAR02966">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.3"/>
@@ -178022,14 +178059,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01334r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01773r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01773r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01371r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01771r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01771r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -178040,7 +178077,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02967" sboTerm="SBO:0000176" id="MAR02967" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02967" sboTerm="SBO:0000176" id="R_MAR02967" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -178048,7 +178085,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02967">
+            <rdf:Description rdf:about="#R_MAR02967">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.3"/>
@@ -178059,14 +178096,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00007r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01334r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00007r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01371r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01584r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01584r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -178077,7 +178114,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02968" sboTerm="SBO:0000176" id="MAR02968" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02968" sboTerm="SBO:0000176" id="R_MAR02968" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -178085,7 +178122,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02968">
+            <rdf:Description rdf:about="#R_MAR02968">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.3"/>
@@ -178096,14 +178133,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00017r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00017r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00018r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01334r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00018r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -178114,7 +178151,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02969" sboTerm="SBO:0000176" id="MAR02969" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02969" sboTerm="SBO:0000176" id="R_MAR02969" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -178122,7 +178159,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02969">
+            <rdf:Description rdf:about="#R_MAR02969">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.3"/>
@@ -178133,14 +178170,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01235r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01235r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01236r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01334r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01236r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -178151,7 +178188,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02970" sboTerm="SBO:0000176" id="MAR02970" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02970" sboTerm="SBO:0000176" id="R_MAR02970" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -178159,7 +178196,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02970">
+            <rdf:Description rdf:about="#R_MAR02970">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.3"/>
@@ -178170,14 +178207,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00123r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01334r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00123r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01207r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01207r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -178188,7 +178225,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02971" sboTerm="SBO:0000176" id="MAR02971" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02971" sboTerm="SBO:0000176" id="R_MAR02971" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -178196,7 +178233,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02971">
+            <rdf:Description rdf:about="#R_MAR02971">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.3"/>
@@ -178207,14 +178244,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00101r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01334r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00101r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01371r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02457r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02457r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -178225,7 +178262,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02972" sboTerm="SBO:0000176" id="MAR02972" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02972" sboTerm="SBO:0000176" id="R_MAR02972" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -178233,7 +178270,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02972">
+            <rdf:Description rdf:about="#R_MAR02972">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.3"/>
@@ -178244,14 +178281,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01334r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02052r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02052r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01371r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02053r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02053r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -178262,7 +178299,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02973" sboTerm="SBO:0000176" id="MAR02973" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02973" sboTerm="SBO:0000176" id="R_MAR02973" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -178270,7 +178307,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02973">
+            <rdf:Description rdf:about="#R_MAR02973">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.3"/>
@@ -178281,14 +178318,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01334r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01725r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01725r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01371r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01373r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01373r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -178299,7 +178336,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02974" sboTerm="SBO:0000176" id="MAR02974" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02974" sboTerm="SBO:0000176" id="R_MAR02974" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -178307,7 +178344,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02974">
+            <rdf:Description rdf:about="#R_MAR02974">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.3"/>
@@ -178318,14 +178355,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00016r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01334r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00016r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01371r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01583r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01583r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -178336,7 +178373,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02975" sboTerm="SBO:0000176" id="MAR02975" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02975" sboTerm="SBO:0000176" id="R_MAR02975" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -178344,7 +178381,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02975">
+            <rdf:Description rdf:about="#R_MAR02975">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.3"/>
@@ -178355,14 +178392,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00006r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01334r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00006r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01371r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01582r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01582r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -178373,7 +178410,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02976" sboTerm="SBO:0000176" id="MAR02976" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02976" sboTerm="SBO:0000176" id="R_MAR02976" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -178381,7 +178418,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02976">
+            <rdf:Description rdf:about="#R_MAR02976">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.3"/>
@@ -178392,14 +178429,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01334r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03047r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03047r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01371r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03045r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03045r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -178410,7 +178447,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02977" sboTerm="SBO:0000176" id="MAR02977" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02977" sboTerm="SBO:0000176" id="R_MAR02977" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -178418,7 +178455,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02977">
+            <rdf:Description rdf:about="#R_MAR02977">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.3"/>
@@ -178429,14 +178466,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01334r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02971r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02971r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01371r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02385r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02385r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -178447,7 +178484,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02978" sboTerm="SBO:0000176" id="MAR02978" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02978" sboTerm="SBO:0000176" id="R_MAR02978" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -178455,7 +178492,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02978">
+            <rdf:Description rdf:about="#R_MAR02978">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.3"/>
@@ -178466,14 +178503,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00025r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01334r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00025r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01371r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02564r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02564r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -178484,7 +178521,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02979" sboTerm="SBO:0000176" id="MAR02979" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02979" sboTerm="SBO:0000176" id="R_MAR02979" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -178492,7 +178529,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02979">
+            <rdf:Description rdf:about="#R_MAR02979">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.3"/>
@@ -178503,14 +178540,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01334r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02110r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02110r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01371r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01432r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01432r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -178521,7 +178558,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02980" sboTerm="SBO:0000176" id="MAR02980" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02980" sboTerm="SBO:0000176" id="R_MAR02980" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -178529,7 +178566,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02980">
+            <rdf:Description rdf:about="#R_MAR02980">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.3"/>
@@ -178540,14 +178577,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01334r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02112r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02112r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01371r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03153r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03153r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -178558,7 +178595,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02981" sboTerm="SBO:0000176" id="MAR02981" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02981" sboTerm="SBO:0000176" id="R_MAR02981" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -178566,7 +178603,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02981">
+            <rdf:Description rdf:about="#R_MAR02981">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.3"/>
@@ -178577,14 +178614,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01334r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02390r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02390r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01371r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02389r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02389r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -178595,7 +178632,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02982" sboTerm="SBO:0000176" id="MAR02982" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02982" sboTerm="SBO:0000176" id="R_MAR02982" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -178603,7 +178640,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02982">
+            <rdf:Description rdf:about="#R_MAR02982">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.3"/>
@@ -178614,14 +178651,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00108r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01334r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00108r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01371r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02939r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02939r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -178632,7 +178669,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02983" sboTerm="SBO:0000176" id="MAR02983" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02983" sboTerm="SBO:0000176" id="R_MAR02983" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -178640,7 +178677,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02983">
+            <rdf:Description rdf:about="#R_MAR02983">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.3"/>
@@ -178651,14 +178688,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00125r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01334r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00125r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01371r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02648r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02648r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -178669,7 +178706,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02984" sboTerm="SBO:0000176" id="MAR02984" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02984" sboTerm="SBO:0000176" id="R_MAR02984" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -178678,7 +178715,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02984">
+            <rdf:Description rdf:about="#R_MAR02984">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.3"/>
@@ -178689,14 +178726,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00103r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01334r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00103r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01371r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01784r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01784r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -178707,7 +178744,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02985" sboTerm="SBO:0000176" id="MAR02985" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02985" sboTerm="SBO:0000176" id="R_MAR02985" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -178715,7 +178752,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02985">
+            <rdf:Description rdf:about="#R_MAR02985">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.3"/>
@@ -178726,14 +178763,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00121r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01334r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00121r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01371r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01741r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01741r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -178744,7 +178781,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02986" sboTerm="SBO:0000176" id="MAR02986" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02986" sboTerm="SBO:0000176" id="R_MAR02986" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -178752,7 +178789,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02986">
+            <rdf:Description rdf:about="#R_MAR02986">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.3"/>
@@ -178763,14 +178800,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00135r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00135r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00134r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01334r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00134r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -178781,7 +178818,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02987" sboTerm="SBO:0000176" id="MAR02987" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02987" sboTerm="SBO:0000176" id="R_MAR02987" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -178790,7 +178827,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02987">
+            <rdf:Description rdf:about="#R_MAR02987">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.3"/>
@@ -178801,14 +178838,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00114r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00114r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00113r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01334r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00113r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -178819,7 +178856,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02988" sboTerm="SBO:0000176" id="MAR02988" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02988" sboTerm="SBO:0000176" id="R_MAR02988" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -178827,7 +178864,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02988">
+            <rdf:Description rdf:about="#R_MAR02988">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.3"/>
@@ -178838,14 +178875,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00095r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01334r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00095r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01371r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01689r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01689r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -178856,7 +178893,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02989" sboTerm="SBO:0000176" id="MAR02989" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02989" sboTerm="SBO:0000176" id="R_MAR02989" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -178864,7 +178901,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02989">
+            <rdf:Description rdf:about="#R_MAR02989">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.3"/>
@@ -178875,14 +178912,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00010r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00010r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00012r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01334r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00012r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -178893,7 +178930,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02990" sboTerm="SBO:0000176" id="MAR02990" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02990" sboTerm="SBO:0000176" id="R_MAR02990" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -178901,7 +178938,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02990">
+            <rdf:Description rdf:about="#R_MAR02990">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.3"/>
@@ -178912,14 +178949,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00341r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00341r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00343r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01334r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00343r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -178930,7 +178967,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02991" sboTerm="SBO:0000176" id="MAR02991" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02991" sboTerm="SBO:0000176" id="R_MAR02991" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -178939,7 +178976,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02991">
+            <rdf:Description rdf:about="#R_MAR02991">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.3"/>
@@ -178950,14 +178987,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01334r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02391r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02391r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01371r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02387r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02387r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -178968,7 +179005,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02992" sboTerm="SBO:0000176" id="MAR02992" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02992" sboTerm="SBO:0000176" id="R_MAR02992" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -178977,7 +179014,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02992">
+            <rdf:Description rdf:about="#R_MAR02992">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.3"/>
@@ -178989,14 +179026,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01334r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01934r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01934r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01371r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01932r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01932r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -179007,7 +179044,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02994" sboTerm="SBO:0000176" id="MAR02994" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02994" sboTerm="SBO:0000176" id="R_MAR02994" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -179015,7 +179052,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02994">
+            <rdf:Description rdf:about="#R_MAR02994">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.3"/>
@@ -179026,14 +179063,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01334r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01697r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01697r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01371r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01696r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01696r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -179044,7 +179081,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02996" sboTerm="SBO:0000176" id="MAR02996" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02996" sboTerm="SBO:0000176" id="R_MAR02996" name="Arachidonate:CoA ligase (AMP-forming)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -179053,7 +179090,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02996">
+            <rdf:Description rdf:about="#R_MAR02996">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.3"/>
@@ -179065,14 +179102,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01334r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01364r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01364r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01362r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01362r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -179083,7 +179120,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02998" sboTerm="SBO:0000176" id="MAR02998" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02998" sboTerm="SBO:0000176" id="R_MAR02998" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -179091,7 +179128,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02998">
+            <rdf:Description rdf:about="#R_MAR02998">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.3"/>
@@ -179102,14 +179139,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00119r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01334r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00119r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01291r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01291r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -179120,7 +179157,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02999" sboTerm="SBO:0000176" id="MAR02999" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02999" sboTerm="SBO:0000176" id="R_MAR02999" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -179128,7 +179165,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02999">
+            <rdf:Description rdf:about="#R_MAR02999">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.3"/>
@@ -179139,14 +179176,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00132r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00132r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00131r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01334r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00131r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -179157,7 +179194,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03000" sboTerm="SBO:0000176" id="MAR03000" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03000" sboTerm="SBO:0000176" id="R_MAR03000" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -179166,7 +179203,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03000">
+            <rdf:Description rdf:about="#R_MAR03000">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.3"/>
@@ -179177,14 +179214,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00111r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00111r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00110r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01334r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00110r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -179195,7 +179232,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03001" sboTerm="SBO:0000176" id="MAR03001" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03001" sboTerm="SBO:0000176" id="R_MAR03001" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -179203,7 +179240,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03001">
+            <rdf:Description rdf:about="#R_MAR03001">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.3"/>
@@ -179214,14 +179251,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00094r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00094r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00093r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01334r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00093r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -179232,7 +179269,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03002" sboTerm="SBO:0000176" id="MAR03002" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03002" sboTerm="SBO:0000176" id="R_MAR03002" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -179240,7 +179277,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03002">
+            <rdf:Description rdf:about="#R_MAR03002">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.3"/>
@@ -179251,14 +179288,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00008r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00008r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00009r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01334r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00009r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -179269,7 +179306,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03003" sboTerm="SBO:0000176" id="MAR03003" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03003" sboTerm="SBO:0000176" id="R_MAR03003" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -179277,7 +179314,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03003">
+            <rdf:Description rdf:about="#R_MAR03003">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.3"/>
@@ -179288,14 +179325,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00021r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00021r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00023r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01334r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00023r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -179306,7 +179343,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02152" sboTerm="SBO:0000176" id="MAR02152" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02152" sboTerm="SBO:0000176" id="R_MAR02152" name="Acyl-[acyl-carrier-protein]:malonyl-[acyl-carrier-protein] C-acyltransferase (decarboxylating)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -179315,7 +179352,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02152">
+            <rdf:Description rdf:about="#R_MAR02152">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.85"/>
@@ -179329,14 +179366,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01258c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02442c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01258c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02442c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00184c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01254c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01596c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00184c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01254c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01596c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -179345,7 +179382,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02153" sboTerm="SBO:0000176" id="MAR02153" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02153" sboTerm="SBO:0000176" id="R_MAR02153" name="(3R)-3-hydroxybutanoyl-[acyl-carrier protein]:NADP+ oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -179354,7 +179391,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02153">
+            <rdf:Description rdf:about="#R_MAR02153">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.85"/>
@@ -179369,19 +179406,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01254c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01254c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00158c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00158c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="FASN1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02154" sboTerm="SBO:0000176" id="MAR02154" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02154" sboTerm="SBO:0000176" id="R_MAR02154" name="(3R)-3-hydroxybutanoyl-[acyl-carrier-protein] hydro-lyase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -179390,7 +179427,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02154">
+            <rdf:Description rdf:about="#R_MAR02154">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.85"/>
@@ -179404,17 +179441,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00158c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00158c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01409c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01409c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="FASN1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02155" sboTerm="SBO:0000176" id="MAR02155" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02155" sboTerm="SBO:0000176" id="R_MAR02155" name="butyryl-[acp]:NADP+ trans-2-oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -179422,7 +179459,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02155">
+            <rdf:Description rdf:about="#R_MAR02155">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.1.3.85"/>
@@ -179436,13 +179473,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01409c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01409c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01411c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01411c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -179451,7 +179488,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02156" sboTerm="SBO:0000176" id="MAR02156" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02156" sboTerm="SBO:0000176" id="R_MAR02156" name="butyryl-[acyl-carrier protein]:malonyl-[acyl-carrier-protein] C-acyltransferase (decarboxylating)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -179460,7 +179497,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02156">
+            <rdf:Description rdf:about="#R_MAR02156">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.85"/>
@@ -179475,14 +179512,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01411c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02442c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01411c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02442c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00184c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00881c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01596c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00184c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00881c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01596c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -179491,7 +179528,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02157" sboTerm="SBO:0000176" id="MAR02157" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02157" sboTerm="SBO:0000176" id="R_MAR02157" name="(3R)-3-hydroxyhexanoyl-[acyl-carrier-protein]:NADP+ oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -179500,7 +179537,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02157">
+            <rdf:Description rdf:about="#R_MAR02157">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.85"/>
@@ -179515,19 +179552,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00881c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00881c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01635c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01635c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="FASN1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02158" sboTerm="SBO:0000176" id="MAR02158" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02158" sboTerm="SBO:0000176" id="R_MAR02158" name="(3R)-3-hydroxybutanoyl-[acyl-carrier-protein] hydro-lyase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -179536,7 +179573,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02158">
+            <rdf:Description rdf:about="#R_MAR02158">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.85"/>
@@ -179550,17 +179587,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01635c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01635c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00052c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00052c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="FASN1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02159" sboTerm="SBO:0000176" id="MAR02159" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02159" sboTerm="SBO:0000176" id="R_MAR02159" name="hexanoyl-[acp]:NADP+ trans-2-oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -179569,7 +179606,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02159">
+            <rdf:Description rdf:about="#R_MAR02159">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.85"/>
@@ -179585,19 +179622,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00052c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00052c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02121c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02121c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="FASN1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02160" sboTerm="SBO:0000176" id="MAR02160" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02160" sboTerm="SBO:0000176" id="R_MAR02160" name="hexanoyl-[acyl-carrier protein]:malonyl-[acyl-carrier-protein] C-acyltransferase (decarboxylating)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -179606,7 +179643,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02160">
+            <rdf:Description rdf:about="#R_MAR02160">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.85"/>
@@ -179621,14 +179658,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02121c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02442c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02121c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02442c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00184c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00891c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01596c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00184c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00891c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01596c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -179637,7 +179674,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02161" sboTerm="SBO:0000176" id="MAR02161" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02161" sboTerm="SBO:0000176" id="R_MAR02161" name="(3R)-3-hydroxyoctanoyl-[acyl-carrier-protein]:NADP+ oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -179646,7 +179683,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02161">
+            <rdf:Description rdf:about="#R_MAR02161">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.85"/>
@@ -179661,19 +179698,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00891c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00891c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00161c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00161c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="FASN1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02162" sboTerm="SBO:0000176" id="MAR02162" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02162" sboTerm="SBO:0000176" id="R_MAR02162" name="(3R)-3-hydroxyoctanoyl-[acyl-carrier-protein] hydro-lyase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -179682,7 +179719,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02162">
+            <rdf:Description rdf:about="#R_MAR02162">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.85"/>
@@ -179696,17 +179733,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00161c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00161c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00058c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00058c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="FASN1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02163" sboTerm="SBO:0000176" id="MAR02163" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02163" sboTerm="SBO:0000176" id="R_MAR02163" name="octanoyl-[acp]:NADP+ trans-2-oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -179715,7 +179752,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02163">
+            <rdf:Description rdf:about="#R_MAR02163">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.85"/>
@@ -179731,19 +179768,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00058c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00058c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02643c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02643c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="FASN1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02164" sboTerm="SBO:0000176" id="MAR02164" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02164" sboTerm="SBO:0000176" id="R_MAR02164" name="Octanoyl-[acyl-carrier protein]:malonyl-[acyl-carrier-protein] C-acyltransferase (decarboxylating)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -179752,7 +179789,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02164">
+            <rdf:Description rdf:about="#R_MAR02164">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.85"/>
@@ -179767,14 +179804,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02442c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02643c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02442c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02643c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00184c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00857c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01596c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00184c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00857c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01596c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -179783,7 +179820,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02165" sboTerm="SBO:0000176" id="MAR02165" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02165" sboTerm="SBO:0000176" id="R_MAR02165" name="(3R)-3-hydroxydecanoyl-[acyl-carrier-protein]:NADP+ oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -179792,7 +179829,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02165">
+            <rdf:Description rdf:about="#R_MAR02165">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.85"/>
@@ -179807,19 +179844,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00857c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00857c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00160c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00160c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="FASN1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02166" sboTerm="SBO:0000176" id="MAR02166" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02166" sboTerm="SBO:0000176" id="R_MAR02166" name="(3R)-3-hydroxydecanoyl-[acyl-carrier-protein] hydro-lyase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -179828,7 +179865,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02166">
+            <rdf:Description rdf:about="#R_MAR02166">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.85"/>
@@ -179842,17 +179879,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00160c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00160c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00038c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00038c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="FASN1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02167" sboTerm="SBO:0000176" id="MAR02167" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02167" sboTerm="SBO:0000176" id="R_MAR02167" name="decanoyl-[acp]:NADP+ trans-2-oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -179861,7 +179898,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02167">
+            <rdf:Description rdf:about="#R_MAR02167">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.85"/>
@@ -179877,19 +179914,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00038c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00038c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01649c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01649c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="FASN1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02168" sboTerm="SBO:0000176" id="MAR02168" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02168" sboTerm="SBO:0000176" id="R_MAR02168" name="Decanoyl-[acyl-carrier protein]:malonyl-[acyl-carrier-protein] C-acyltransferase (decarboxylating)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -179898,7 +179935,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02168">
+            <rdf:Description rdf:about="#R_MAR02168">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.85"/>
@@ -179913,14 +179950,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01649c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02442c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01649c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02442c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00184c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00867c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01596c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00184c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00867c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01596c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -179929,7 +179966,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02169" sboTerm="SBO:0000176" id="MAR02169" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02169" sboTerm="SBO:0000176" id="R_MAR02169" name="(3R)-3-hydroxydodecanoyl-[acyl-carrier-protein]:NADP+ oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -179938,7 +179975,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02169">
+            <rdf:Description rdf:about="#R_MAR02169">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.85"/>
@@ -179953,19 +179990,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00867c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00867c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01634c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01634c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="FASN1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02170" sboTerm="SBO:0000176" id="MAR02170" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02170" sboTerm="SBO:0000176" id="R_MAR02170" name="(3R)-3-hydroxydodecanoyl-[acyl-carrier-protein] hydro-lyase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -179974,7 +180011,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02170">
+            <rdf:Description rdf:about="#R_MAR02170">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.85"/>
@@ -179988,17 +180025,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01634c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01634c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00041c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00041c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="FASN1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02171" sboTerm="SBO:0000176" id="MAR02171" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02171" sboTerm="SBO:0000176" id="R_MAR02171" name="dodecanoyl-[acp]:NADP+ trans-2-oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -180007,7 +180044,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02171">
+            <rdf:Description rdf:about="#R_MAR02171">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.85"/>
@@ -180023,19 +180060,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00041c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00041c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01728c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01728c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="FASN1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02173" sboTerm="SBO:0000176" id="MAR02173" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02173" sboTerm="SBO:0000176" id="R_MAR02173" name="dodecanoyl-[acyl-carrier-protein]:malonyl-[acyl-carrier-protein] C-acyltransferase (decarboxylating)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -180044,7 +180081,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02173">
+            <rdf:Description rdf:about="#R_MAR02173">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.85"/>
@@ -180059,14 +180096,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01728c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02442c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01728c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02442c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00184c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00905c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01596c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00184c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00905c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01596c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -180075,7 +180112,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02174" sboTerm="SBO:0000176" id="MAR02174" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02174" sboTerm="SBO:0000176" id="R_MAR02174" name="(3R)-3-hydroxytetradecanoyl-[acyl-carrier-protein]:NADP+ oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -180084,7 +180121,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02174">
+            <rdf:Description rdf:about="#R_MAR02174">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.85"/>
@@ -180098,19 +180135,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00905c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00905c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02130c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02130c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="FASN1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02175" sboTerm="SBO:0000176" id="MAR02175" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02175" sboTerm="SBO:0000176" id="R_MAR02175" name="(3R)-3-hydroxytetradecanoyl-[acyl-carrier-protein] hydro-lyase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -180119,7 +180156,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02175">
+            <rdf:Description rdf:about="#R_MAR02175">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.85"/>
@@ -180133,17 +180170,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02130c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02130c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00065c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00065c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="FASN1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02176" sboTerm="SBO:0000176" id="MAR02176" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02176" sboTerm="SBO:0000176" id="R_MAR02176" name="tetradecanoyl-[acp]:NADP+ trans-2-oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -180152,7 +180189,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02176">
+            <rdf:Description rdf:about="#R_MAR02176">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.85"/>
@@ -180168,19 +180205,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00065c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00065c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02972c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02972c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="FASN1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02178" sboTerm="SBO:0000176" id="MAR02178" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02178" sboTerm="SBO:0000176" id="R_MAR02178" name="Tetradecanoyl-[acyl-carrier protein]:malonyl-[acyl-carrier-protein] C-acyltransferase (decarboxylating)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -180189,7 +180226,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02178">
+            <rdf:Description rdf:about="#R_MAR02178">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.85"/>
@@ -180204,14 +180241,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02442c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02972c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02442c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02972c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00184c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00880c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01596c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00184c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00880c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01596c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -180220,7 +180257,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02179" sboTerm="SBO:0000176" id="MAR02179" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02179" sboTerm="SBO:0000176" id="R_MAR02179" name="(3R)-3-hydroxypalmitoyl-[acyl-carrier-protein]:NADP+ oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -180229,7 +180266,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02179">
+            <rdf:Description rdf:about="#R_MAR02179">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.85"/>
@@ -180244,19 +180281,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00880c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00880c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00162c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00162c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="FASN1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02180" sboTerm="SBO:0000176" id="MAR02180" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02180" sboTerm="SBO:0000176" id="R_MAR02180" name="(3R)-3-hydroxypalmitoyl-[acyl-carrier-protein] hydro-lyase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -180265,7 +180302,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02180">
+            <rdf:Description rdf:about="#R_MAR02180">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.85"/>
@@ -180279,17 +180316,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00162c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00162c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00050c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00050c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="FASN1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02181" sboTerm="SBO:0000176" id="MAR02181" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02181" sboTerm="SBO:0000176" id="R_MAR02181" name="hexadecanoyl-[acp]:NADP+ trans-2-oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -180298,7 +180335,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02181">
+            <rdf:Description rdf:about="#R_MAR02181">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.85"/>
@@ -180314,19 +180351,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00050c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00050c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02115c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02115c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="FASN1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04156" sboTerm="SBO:0000176" id="MAR04156" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04156" sboTerm="SBO:0000176" id="R_MAR04156" name="acetyl-CoA:carbon-dioxide ligase (ADP-forming)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -180335,7 +180372,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04156">
+            <rdf:Description rdf:about="#R_MAR04156">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.4.1.2"/>
@@ -180351,21 +180388,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01261c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02444c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02444c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="ACC"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04295" sboTerm="SBO:0000176" id="MAR04295" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04295" sboTerm="SBO:0000176" id="R_MAR04295" name="acetyl-CoA:carbon-dioxide ligase (ADP-forming)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -180374,7 +180411,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04295">
+            <rdf:Description rdf:about="#R_MAR04295">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.4.1.2"/>
@@ -180390,21 +180427,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01261m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02444m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02444m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="ACC"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02227" sboTerm="SBO:0000176" id="MAR02227" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02227" sboTerm="SBO:0000176" id="R_MAR02227" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -180412,7 +180449,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02227">
+            <rdf:Description rdf:about="#R_MAR02227">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.85"/>
@@ -180423,18 +180460,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00184c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02774c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00184c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02774c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02773c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02773c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="FASN1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02228" sboTerm="SBO:0000176" id="MAR02228" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02228" sboTerm="SBO:0000176" id="R_MAR02228" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -180442,7 +180479,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02228">
+            <rdf:Description rdf:about="#R_MAR02228">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.85"/>
@@ -180453,20 +180490,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02442c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02773c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02442c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02773c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00184c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00898c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01596c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00184c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00898c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01596c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="FASN1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02229" sboTerm="SBO:0000176" id="MAR02229" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02229" sboTerm="SBO:0000176" id="R_MAR02229" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -180474,7 +180511,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02229">
+            <rdf:Description rdf:about="#R_MAR02229">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.85"/>
@@ -180485,19 +180522,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00898c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00898c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00796c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00796c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="FASN1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02230" sboTerm="SBO:0000176" id="MAR02230" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02230" sboTerm="SBO:0000176" id="R_MAR02230" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -180505,7 +180542,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02230">
+            <rdf:Description rdf:about="#R_MAR02230">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.85"/>
@@ -180516,17 +180553,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00796c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00796c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00062c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00062c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="FASN1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02231" sboTerm="SBO:0000176" id="MAR02231" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02231" sboTerm="SBO:0000176" id="R_MAR02231" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -180534,7 +180571,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02231">
+            <rdf:Description rdf:about="#R_MAR02231">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.85"/>
@@ -180545,19 +180582,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00062c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00062c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02693c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02693c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="FASN1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02232" sboTerm="SBO:0000176" id="MAR02232" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02232" sboTerm="SBO:0000176" id="R_MAR02232" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -180565,7 +180602,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02232">
+            <rdf:Description rdf:about="#R_MAR02232">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.85"/>
@@ -180576,20 +180613,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02442c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02693c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02442c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02693c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00184c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00876c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01596c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00184c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00876c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01596c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="FASN1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02233" sboTerm="SBO:0000176" id="MAR02233" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02233" sboTerm="SBO:0000176" id="R_MAR02233" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -180597,7 +180634,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02233">
+            <rdf:Description rdf:about="#R_MAR02233">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.85"/>
@@ -180608,19 +180645,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00876c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00876c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00781c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00781c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="FASN1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02234" sboTerm="SBO:0000176" id="MAR02234" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02234" sboTerm="SBO:0000176" id="R_MAR02234" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -180628,7 +180665,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02234">
+            <rdf:Description rdf:about="#R_MAR02234">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.85"/>
@@ -180639,17 +180676,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00781c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00781c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00047c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00047c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="FASN1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02235" sboTerm="SBO:0000176" id="MAR02235" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02235" sboTerm="SBO:0000176" id="R_MAR02235" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -180657,7 +180694,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02235">
+            <rdf:Description rdf:about="#R_MAR02235">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.85"/>
@@ -180668,19 +180705,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00047c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00047c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02106c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02106c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="FASN1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02236" sboTerm="SBO:0000176" id="MAR02236" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02236" sboTerm="SBO:0000176" id="R_MAR02236" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -180688,7 +180725,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02236">
+            <rdf:Description rdf:about="#R_MAR02236">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.85"/>
@@ -180699,20 +180736,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02106c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02442c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02106c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02442c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00184c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00888c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01596c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00184c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00888c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01596c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="FASN1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02237" sboTerm="SBO:0000176" id="MAR02237" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02237" sboTerm="SBO:0000176" id="R_MAR02237" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -180720,7 +180757,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02237">
+            <rdf:Description rdf:about="#R_MAR02237">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.85"/>
@@ -180731,19 +180768,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00888c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00888c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00791c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00791c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="FASN1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02238" sboTerm="SBO:0000176" id="MAR02238" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02238" sboTerm="SBO:0000176" id="R_MAR02238" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -180751,7 +180788,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02238">
+            <rdf:Description rdf:about="#R_MAR02238">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.85"/>
@@ -180762,17 +180799,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00791c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00791c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00055c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00055c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="FASN1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02239" sboTerm="SBO:0000176" id="MAR02239" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02239" sboTerm="SBO:0000176" id="R_MAR02239" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -180780,7 +180817,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02239">
+            <rdf:Description rdf:about="#R_MAR02239">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.85"/>
@@ -180791,19 +180828,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00055c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00055c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02615c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02615c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="FASN1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02240" sboTerm="SBO:0000176" id="MAR02240" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02240" sboTerm="SBO:0000176" id="R_MAR02240" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -180811,7 +180848,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02240">
+            <rdf:Description rdf:about="#R_MAR02240">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.85"/>
@@ -180822,20 +180859,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02442c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02615c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02442c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02615c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00184c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00910c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01596c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00184c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00910c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01596c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="FASN1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02241" sboTerm="SBO:0000176" id="MAR02241" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02241" sboTerm="SBO:0000176" id="R_MAR02241" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -180843,7 +180880,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02241">
+            <rdf:Description rdf:about="#R_MAR02241">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.85"/>
@@ -180854,19 +180891,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00910c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00910c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00805c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00805c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="FASN1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02242" sboTerm="SBO:0000176" id="MAR02242" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02242" sboTerm="SBO:0000176" id="R_MAR02242" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -180874,7 +180911,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02242">
+            <rdf:Description rdf:about="#R_MAR02242">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.85"/>
@@ -180885,17 +180922,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00805c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00805c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00070c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00070c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="FASN1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02243" sboTerm="SBO:0000176" id="MAR02243" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02243" sboTerm="SBO:0000176" id="R_MAR02243" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -180903,7 +180940,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02243">
+            <rdf:Description rdf:about="#R_MAR02243">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.85"/>
@@ -180914,19 +180951,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00070c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00070c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03115c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03115c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="FASN1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02244" sboTerm="SBO:0000176" id="MAR02244" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02244" sboTerm="SBO:0000176" id="R_MAR02244" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -180934,7 +180971,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02244">
+            <rdf:Description rdf:about="#R_MAR02244">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.85"/>
@@ -180945,20 +180982,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02442c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03115c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02442c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03115c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00184c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00908c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01596c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00184c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00908c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01596c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="FASN1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02245" sboTerm="SBO:0000176" id="MAR02245" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02245" sboTerm="SBO:0000176" id="R_MAR02245" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -180966,7 +181003,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02245">
+            <rdf:Description rdf:about="#R_MAR02245">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.85"/>
@@ -180977,19 +181014,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00908c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00908c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00803c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00803c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="FASN1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02246" sboTerm="SBO:0000176" id="MAR02246" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02246" sboTerm="SBO:0000176" id="R_MAR02246" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -180997,7 +181034,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02246">
+            <rdf:Description rdf:about="#R_MAR02246">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.85"/>
@@ -181008,17 +181045,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00803c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00803c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00068c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00068c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="FASN1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02247" sboTerm="SBO:0000176" id="MAR02247" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02247" sboTerm="SBO:0000176" id="R_MAR02247" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -181026,7 +181063,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02247">
+            <rdf:Description rdf:about="#R_MAR02247">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.85"/>
@@ -181037,19 +181074,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00068c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00068c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03048c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03048c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="FASN1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02249" sboTerm="SBO:0000176" id="MAR02249" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02249" sboTerm="SBO:0000176" id="R_MAR02249" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -181057,7 +181094,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02249">
+            <rdf:Description rdf:about="#R_MAR02249">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.85"/>
@@ -181068,20 +181105,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02442c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03048c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02442c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03048c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00184c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00896c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01596c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00184c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00896c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01596c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="FASN1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02250" sboTerm="SBO:0000176" id="MAR02250" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02250" sboTerm="SBO:0000176" id="R_MAR02250" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -181089,7 +181126,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02250">
+            <rdf:Description rdf:about="#R_MAR02250">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.85"/>
@@ -181100,19 +181137,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00896c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00896c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00794c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00794c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="FASN1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02251" sboTerm="SBO:0000176" id="MAR02251" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02251" sboTerm="SBO:0000176" id="R_MAR02251" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -181120,7 +181157,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02251">
+            <rdf:Description rdf:about="#R_MAR02251">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.85"/>
@@ -181131,17 +181168,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00794c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00794c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00060c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00060c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="FASN1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02252" sboTerm="SBO:0000176" id="MAR02252" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02252" sboTerm="SBO:0000176" id="R_MAR02252" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -181149,7 +181186,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02252">
+            <rdf:Description rdf:about="#R_MAR02252">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.85"/>
@@ -181160,19 +181197,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00060c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00060c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02687c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02687c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="FASN1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02254" sboTerm="SBO:0000176" id="MAR02254" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02254" sboTerm="SBO:0000176" id="R_MAR02254" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -181180,7 +181217,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02254">
+            <rdf:Description rdf:about="#R_MAR02254">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.85"/>
@@ -181191,20 +181228,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02442c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02687c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02442c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02687c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00184c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00874c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01596c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00184c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00874c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01596c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="FASN1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02255" sboTerm="SBO:0000176" id="MAR02255" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02255" sboTerm="SBO:0000176" id="R_MAR02255" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -181212,7 +181249,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02255">
+            <rdf:Description rdf:about="#R_MAR02255">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.85"/>
@@ -181223,19 +181260,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00874c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00874c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00779c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00779c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="FASN1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02256" sboTerm="SBO:0000176" id="MAR02256" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02256" sboTerm="SBO:0000176" id="R_MAR02256" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -181243,7 +181280,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02256">
+            <rdf:Description rdf:about="#R_MAR02256">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.85"/>
@@ -181254,17 +181291,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00779c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00779c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00045c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00045c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="FASN1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02257" sboTerm="SBO:0000176" id="MAR02257" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02257" sboTerm="SBO:0000176" id="R_MAR02257" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -181272,7 +181309,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02257">
+            <rdf:Description rdf:about="#R_MAR02257">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.85"/>
@@ -181283,19 +181320,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00045c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00045c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02099c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02099c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="FASN1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02305" sboTerm="SBO:0000176" id="MAR02305" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02305" sboTerm="SBO:0000176" id="R_MAR02305" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -181304,7 +181341,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02305">
+            <rdf:Description rdf:about="#R_MAR02305">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.199"/>
@@ -181316,17 +181353,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02444c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02647c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02444c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02647c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00840c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01596c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00840c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01596c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR02307" sboTerm="SBO:0000176" id="MAR02307" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02307" sboTerm="SBO:0000176" id="R_MAR02307" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -181335,7 +181372,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02307">
+            <rdf:Description rdf:about="#R_MAR02307">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.330"/>
@@ -181347,19 +181384,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00840c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00840c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00700c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00700c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="spidey"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02309" sboTerm="SBO:0000176" id="MAR02309" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02309" sboTerm="SBO:0000176" id="R_MAR02309" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -181368,7 +181405,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02309">
+            <rdf:Description rdf:about="#R_MAR02309">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.134"/>
@@ -181380,11 +181417,11 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00700c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00700c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03012c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03012c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -181394,7 +181431,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02311" sboTerm="SBO:0000176" id="MAR02311" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02311" sboTerm="SBO:0000176" id="R_MAR02311" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -181403,7 +181440,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02311">
+            <rdf:Description rdf:about="#R_MAR02311">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.1.93"/>
@@ -181415,19 +181452,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03012c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03012c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00007c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00007c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Sc2"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02315" sboTerm="SBO:0000176" id="MAR02315" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02315" sboTerm="SBO:0000176" id="R_MAR02315" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -181436,7 +181473,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02315">
+            <rdf:Description rdf:about="#R_MAR02315">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.199"/>
@@ -181448,17 +181485,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00007c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02444c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00007c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02444c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00842c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01596c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00842c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01596c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR02317" sboTerm="SBO:0000176" id="MAR02317" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02317" sboTerm="SBO:0000176" id="R_MAR02317" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -181467,7 +181504,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02317">
+            <rdf:Description rdf:about="#R_MAR02317">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.330"/>
@@ -181479,19 +181516,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00842c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00842c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00701c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00701c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="spidey"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02319" sboTerm="SBO:0000176" id="MAR02319" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02319" sboTerm="SBO:0000176" id="R_MAR02319" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -181500,7 +181537,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02319">
+            <rdf:Description rdf:about="#R_MAR02319">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.134"/>
@@ -181512,11 +181549,11 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00701c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00701c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03013c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03013c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -181526,7 +181563,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02321" sboTerm="SBO:0000176" id="MAR02321" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02321" sboTerm="SBO:0000176" id="R_MAR02321" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -181535,7 +181572,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02321">
+            <rdf:Description rdf:about="#R_MAR02321">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.1.93"/>
@@ -181547,19 +181584,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03013c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03013c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00016c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00016c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Sc2"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02324" sboTerm="SBO:0000176" id="MAR02324" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02324" sboTerm="SBO:0000176" id="R_MAR02324" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -181568,7 +181605,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02324">
+            <rdf:Description rdf:about="#R_MAR02324">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.199"/>
@@ -181580,17 +181617,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00016c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02444c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00016c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02444c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00856c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01596c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00856c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01596c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR02326" sboTerm="SBO:0000176" id="MAR02326" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02326" sboTerm="SBO:0000176" id="R_MAR02326" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -181599,7 +181636,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02326">
+            <rdf:Description rdf:about="#R_MAR02326">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.330"/>
@@ -181611,19 +181648,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00856c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00856c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00709c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00709c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="spidey"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02328" sboTerm="SBO:0000176" id="MAR02328" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02328" sboTerm="SBO:0000176" id="R_MAR02328" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -181632,7 +181669,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02328">
+            <rdf:Description rdf:about="#R_MAR02328">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.134"/>
@@ -181644,11 +181681,11 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00709c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00709c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03015c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03015c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -181658,7 +181695,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02330" sboTerm="SBO:0000176" id="MAR02330" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02330" sboTerm="SBO:0000176" id="R_MAR02330" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -181667,7 +181704,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02330">
+            <rdf:Description rdf:about="#R_MAR02330">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.1.93"/>
@@ -181679,19 +181716,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03015c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03015c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00025c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00025c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Sc2"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02332" sboTerm="SBO:0000176" id="MAR02332" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02332" sboTerm="SBO:0000176" id="R_MAR02332" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -181700,7 +181737,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02332">
+            <rdf:Description rdf:about="#R_MAR02332">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.199"/>
@@ -181711,17 +181748,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00025c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02444c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00025c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02444c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00879c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01596c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00879c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01596c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR02334" sboTerm="SBO:0000176" id="MAR02334" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02334" sboTerm="SBO:0000176" id="R_MAR02334" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -181730,7 +181767,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02334">
+            <rdf:Description rdf:about="#R_MAR02334">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.330"/>
@@ -181741,19 +181778,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00879c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00879c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00715c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00715c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="spidey"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02336" sboTerm="SBO:0000176" id="MAR02336" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02336" sboTerm="SBO:0000176" id="R_MAR02336" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -181762,7 +181799,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02336">
+            <rdf:Description rdf:about="#R_MAR02336">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.134"/>
@@ -181773,11 +181810,11 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00715c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00715c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03016c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03016c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -181787,7 +181824,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02338" sboTerm="SBO:0000176" id="MAR02338" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02338" sboTerm="SBO:0000176" id="R_MAR02338" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -181796,7 +181833,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02338">
+            <rdf:Description rdf:about="#R_MAR02338">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.1.93"/>
@@ -181807,19 +181844,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03016c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03016c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02112c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02112c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Sc2"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02342" sboTerm="SBO:0000176" id="MAR02342" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02342" sboTerm="SBO:0000176" id="R_MAR02342" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -181828,7 +181865,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02342">
+            <rdf:Description rdf:about="#R_MAR02342">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.199"/>
@@ -181839,17 +181876,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01586c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02444c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01586c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02444c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00843c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01596c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00843c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01596c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR02343" sboTerm="SBO:0000176" id="MAR02343" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02343" sboTerm="SBO:0000176" id="R_MAR02343" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -181858,7 +181895,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02343">
+            <rdf:Description rdf:about="#R_MAR02343">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.330"/>
@@ -181869,19 +181906,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00843c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00843c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00702c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00702c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="spidey"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02344" sboTerm="SBO:0000176" id="MAR02344" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02344" sboTerm="SBO:0000176" id="R_MAR02344" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -181890,7 +181927,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02344">
+            <rdf:Description rdf:about="#R_MAR02344">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.134"/>
@@ -181901,11 +181938,11 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00702c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00702c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03014c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03014c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -181915,7 +181952,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02345" sboTerm="SBO:0000176" id="MAR02345" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02345" sboTerm="SBO:0000176" id="R_MAR02345" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -181924,7 +181961,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02345">
+            <rdf:Description rdf:about="#R_MAR02345">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.1.93"/>
@@ -181935,19 +181972,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03014c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03014c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00018c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00018c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Sc2"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02347" sboTerm="SBO:0000176" id="MAR02347" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02347" sboTerm="SBO:0000176" id="R_MAR02347" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -181956,7 +181993,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02347">
+            <rdf:Description rdf:about="#R_MAR02347">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.199"/>
@@ -181967,17 +182004,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00116c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02444c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00116c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02444c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00852c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01596c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00852c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01596c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR02348" sboTerm="SBO:0000176" id="MAR02348" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02348" sboTerm="SBO:0000176" id="R_MAR02348" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -181986,7 +182023,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02348">
+            <rdf:Description rdf:about="#R_MAR02348">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.330"/>
@@ -181997,19 +182034,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00852c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00852c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00707c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00707c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="spidey"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02349" sboTerm="SBO:0000176" id="MAR02349" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02349" sboTerm="SBO:0000176" id="R_MAR02349" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -182018,7 +182055,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02349">
+            <rdf:Description rdf:about="#R_MAR02349">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.134"/>
@@ -182029,11 +182066,11 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00707c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00707c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03018c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03018c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -182043,7 +182080,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02350" sboTerm="SBO:0000176" id="MAR02350" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02350" sboTerm="SBO:0000176" id="R_MAR02350" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -182052,7 +182089,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02350">
+            <rdf:Description rdf:about="#R_MAR02350">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.1.93"/>
@@ -182063,19 +182100,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03018c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03018c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01236c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01236c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Sc2"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02353" sboTerm="SBO:0000176" id="MAR02353" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02353" sboTerm="SBO:0000176" id="R_MAR02353" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -182084,7 +182121,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02353">
+            <rdf:Description rdf:about="#R_MAR02353">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.199"/>
@@ -182095,17 +182132,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01236c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02444c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01236c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02444c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00839c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01596c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00839c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01596c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR02354" sboTerm="SBO:0000176" id="MAR02354" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02354" sboTerm="SBO:0000176" id="R_MAR02354" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -182114,7 +182151,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02354">
+            <rdf:Description rdf:about="#R_MAR02354">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.330"/>
@@ -182125,19 +182162,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00839c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00839c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00699c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00699c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="spidey"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02355" sboTerm="SBO:0000176" id="MAR02355" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02355" sboTerm="SBO:0000176" id="R_MAR02355" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -182146,7 +182183,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02355">
+            <rdf:Description rdf:about="#R_MAR02355">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.134"/>
@@ -182157,11 +182194,11 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00699c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00699c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03011c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03011c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -182171,7 +182208,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02356" sboTerm="SBO:0000176" id="MAR02356" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02356" sboTerm="SBO:0000176" id="R_MAR02356" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -182180,7 +182217,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02356">
+            <rdf:Description rdf:about="#R_MAR02356">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.1.93"/>
@@ -182191,19 +182228,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03011c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03011c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00006c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00006c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Sc2"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02361" sboTerm="SBO:0000176" id="MAR02361" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02361" sboTerm="SBO:0000176" id="R_MAR02361" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -182212,7 +182249,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02361">
+            <rdf:Description rdf:about="#R_MAR02361">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.199"/>
@@ -182223,17 +182260,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00106c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02444c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00106c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02444c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00871c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01596c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00871c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01596c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR02362" sboTerm="SBO:0000176" id="MAR02362" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02362" sboTerm="SBO:0000176" id="R_MAR02362" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -182242,7 +182279,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02362">
+            <rdf:Description rdf:about="#R_MAR02362">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.330"/>
@@ -182253,19 +182290,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00871c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00871c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00704c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00704c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="spidey"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02363" sboTerm="SBO:0000176" id="MAR02363" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02363" sboTerm="SBO:0000176" id="R_MAR02363" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -182274,7 +182311,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02363">
+            <rdf:Description rdf:about="#R_MAR02363">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.134"/>
@@ -182285,11 +182322,11 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00704c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00704c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03017c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03017c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -182299,7 +182336,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02364" sboTerm="SBO:0000176" id="MAR02364" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02364" sboTerm="SBO:0000176" id="R_MAR02364" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -182308,7 +182345,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02364">
+            <rdf:Description rdf:about="#R_MAR02364">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.1.93"/>
@@ -182319,19 +182356,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03017c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03017c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00123c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00123c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Sc2"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02190" sboTerm="SBO:0000176" id="MAR02190" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02190" sboTerm="SBO:0000176" id="R_MAR02190" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -182340,7 +182377,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02190">
+            <rdf:Description rdf:about="#R_MAR02190">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.199"/>
@@ -182354,17 +182391,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02444c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02678c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02444c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02678c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00890c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01596c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00890c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01596c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR02191" sboTerm="SBO:0000176" id="MAR02191" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02191" sboTerm="SBO:0000176" id="R_MAR02191" name="3-hydroxyoctadecanoyl-CoA:NADP+ oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -182373,7 +182410,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02191">
+            <rdf:Description rdf:about="#R_MAR02191">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.330"/>
@@ -182389,19 +182426,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00890c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00890c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00793c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00793c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="spidey"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02193" sboTerm="SBO:0000176" id="MAR02193" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02193" sboTerm="SBO:0000176" id="R_MAR02193" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -182410,7 +182447,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02193">
+            <rdf:Description rdf:about="#R_MAR02193">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.134"/>
@@ -182424,11 +182461,11 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00793c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00793c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00057c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00057c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -182438,7 +182475,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02194" sboTerm="SBO:0000176" id="MAR02194" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02194" sboTerm="SBO:0000176" id="R_MAR02194" name="octadecanoyl-CoA:NADP+ trans-2-oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -182447,7 +182484,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02194">
+            <rdf:Description rdf:about="#R_MAR02194">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.1.93"/>
@@ -182461,19 +182498,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00057c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00057c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02941c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02941c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Sc2"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02201" sboTerm="SBO:0000176" id="MAR02201" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02201" sboTerm="SBO:0000176" id="R_MAR02201" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -182482,7 +182519,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02201">
+            <rdf:Description rdf:about="#R_MAR02201">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.199"/>
@@ -182494,17 +182531,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02444c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02941c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02444c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02941c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00872c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01596c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00872c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01596c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR02202" sboTerm="SBO:0000176" id="MAR02202" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02202" sboTerm="SBO:0000176" id="R_MAR02202" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -182513,7 +182550,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02202">
+            <rdf:Description rdf:about="#R_MAR02202">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.330"/>
@@ -182525,19 +182562,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00872c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00872c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00777c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00777c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="spidey"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02203" sboTerm="SBO:0000176" id="MAR02203" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02203" sboTerm="SBO:0000176" id="R_MAR02203" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -182546,7 +182583,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02203">
+            <rdf:Description rdf:about="#R_MAR02203">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.134"/>
@@ -182558,11 +182595,11 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00777c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00777c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00043c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00043c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -182572,7 +182609,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02204" sboTerm="SBO:0000176" id="MAR02204" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02204" sboTerm="SBO:0000176" id="R_MAR02204" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -182581,7 +182618,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02204">
+            <rdf:Description rdf:about="#R_MAR02204">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.1.93"/>
@@ -182595,19 +182632,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00043c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00043c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01773c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01773c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Sc2"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02205" sboTerm="SBO:0000176" id="MAR02205" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02205" sboTerm="SBO:0000176" id="R_MAR02205" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -182616,7 +182653,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02205">
+            <rdf:Description rdf:about="#R_MAR02205">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.199"/>
@@ -182630,17 +182667,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01773c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02444c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01773c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02444c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00866c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01596c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00866c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01596c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR02208" sboTerm="SBO:0000176" id="MAR02208" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02208" sboTerm="SBO:0000176" id="R_MAR02208" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -182649,7 +182686,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02208">
+            <rdf:Description rdf:about="#R_MAR02208">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.330"/>
@@ -182663,19 +182700,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00866c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00866c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00776c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00776c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="spidey"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02209" sboTerm="SBO:0000176" id="MAR02209" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02209" sboTerm="SBO:0000176" id="R_MAR02209" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -182684,7 +182721,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02209">
+            <rdf:Description rdf:about="#R_MAR02209">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.134"/>
@@ -182696,11 +182733,11 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00776c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00776c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -182710,7 +182747,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02210" sboTerm="SBO:0000176" id="MAR02210" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02210" sboTerm="SBO:0000176" id="R_MAR02210" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -182719,7 +182756,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02210">
+            <rdf:Description rdf:about="#R_MAR02210">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.1.93"/>
@@ -182733,19 +182770,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01725c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01725c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Sc2"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02211" sboTerm="SBO:0000176" id="MAR02211" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02211" sboTerm="SBO:0000176" id="R_MAR02211" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -182754,7 +182791,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02211">
+            <rdf:Description rdf:about="#R_MAR02211">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.199"/>
@@ -182768,17 +182805,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01725c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02444c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01725c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02444c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00904c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01596c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00904c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01596c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR02212" sboTerm="SBO:0000176" id="MAR02212" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02212" sboTerm="SBO:0000176" id="R_MAR02212" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -182787,7 +182824,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02212">
+            <rdf:Description rdf:about="#R_MAR02212">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.330"/>
@@ -182799,19 +182836,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00904c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00904c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00800c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00800c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="spidey"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02213" sboTerm="SBO:0000176" id="MAR02213" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02213" sboTerm="SBO:0000176" id="R_MAR02213" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -182820,7 +182857,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02213">
+            <rdf:Description rdf:about="#R_MAR02213">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.134"/>
@@ -182832,11 +182869,11 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00800c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00800c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00064c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00064c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -182846,7 +182883,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02214" sboTerm="SBO:0000176" id="MAR02214" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02214" sboTerm="SBO:0000176" id="R_MAR02214" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -182855,7 +182892,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02214">
+            <rdf:Description rdf:about="#R_MAR02214">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.1.93"/>
@@ -182869,19 +182906,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00064c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00064c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02971c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02971c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Sc2"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02215" sboTerm="SBO:0000176" id="MAR02215" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02215" sboTerm="SBO:0000176" id="R_MAR02215" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -182890,7 +182927,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02215">
+            <rdf:Description rdf:about="#R_MAR02215">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.199"/>
@@ -182903,17 +182940,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02444c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02971c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02444c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02971c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00878c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01596c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00878c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01596c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR02217" sboTerm="SBO:0000176" id="MAR02217" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02217" sboTerm="SBO:0000176" id="R_MAR02217" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -182921,7 +182958,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02217">
+            <rdf:Description rdf:about="#R_MAR02217">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.330"/>
@@ -182932,19 +182969,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00878c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00878c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00783c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00783c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="spidey"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02218" sboTerm="SBO:0000176" id="MAR02218" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02218" sboTerm="SBO:0000176" id="R_MAR02218" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -182952,7 +182989,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02218">
+            <rdf:Description rdf:about="#R_MAR02218">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.134"/>
@@ -182963,11 +183000,11 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00783c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00783c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00049c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00049c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -182977,7 +183014,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02219" sboTerm="SBO:0000176" id="MAR02219" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02219" sboTerm="SBO:0000176" id="R_MAR02219" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -182985,7 +183022,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02219">
+            <rdf:Description rdf:about="#R_MAR02219">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.1.93"/>
@@ -182998,19 +183035,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00049c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00049c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02110c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02110c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Sc2"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02259" sboTerm="SBO:0000176" id="MAR02259" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02259" sboTerm="SBO:0000176" id="R_MAR02259" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -183019,7 +183056,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02259">
+            <rdf:Description rdf:about="#R_MAR02259">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.199"/>
@@ -183030,17 +183067,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02101c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02444c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02101c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02444c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00887c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01596c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00887c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01596c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR02260" sboTerm="SBO:0000176" id="MAR02260" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02260" sboTerm="SBO:0000176" id="R_MAR02260" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -183049,7 +183086,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02260">
+            <rdf:Description rdf:about="#R_MAR02260">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.330"/>
@@ -183060,19 +183097,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00887c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00887c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00790c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00790c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="spidey"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02261" sboTerm="SBO:0000176" id="MAR02261" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02261" sboTerm="SBO:0000176" id="R_MAR02261" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -183081,7 +183118,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02261">
+            <rdf:Description rdf:about="#R_MAR02261">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.134"/>
@@ -183092,11 +183129,11 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00790c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00790c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00054c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00054c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -183106,7 +183143,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02262" sboTerm="SBO:0000176" id="MAR02262" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02262" sboTerm="SBO:0000176" id="R_MAR02262" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -183115,7 +183152,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02262">
+            <rdf:Description rdf:about="#R_MAR02262">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.1.93"/>
@@ -183126,19 +183163,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00054c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00054c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02612c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02612c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Sc2"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02263" sboTerm="SBO:0000176" id="MAR02263" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02263" sboTerm="SBO:0000176" id="R_MAR02263" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -183147,7 +183184,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02263">
+            <rdf:Description rdf:about="#R_MAR02263">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.199"/>
@@ -183158,17 +183195,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02444c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02612c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02444c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02612c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00873c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01596c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00873c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01596c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR02264" sboTerm="SBO:0000176" id="MAR02264" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02264" sboTerm="SBO:0000176" id="R_MAR02264" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -183177,7 +183214,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02264">
+            <rdf:Description rdf:about="#R_MAR02264">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.330"/>
@@ -183188,19 +183225,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00873c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00873c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00778c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00778c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="spidey"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02265" sboTerm="SBO:0000176" id="MAR02265" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02265" sboTerm="SBO:0000176" id="R_MAR02265" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -183209,7 +183246,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02265">
+            <rdf:Description rdf:about="#R_MAR02265">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.134"/>
@@ -183220,11 +183257,11 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00778c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00778c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00044c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00044c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -183234,7 +183271,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02266" sboTerm="SBO:0000176" id="MAR02266" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02266" sboTerm="SBO:0000176" id="R_MAR02266" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -183243,7 +183280,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02266">
+            <rdf:Description rdf:about="#R_MAR02266">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.1.93"/>
@@ -183254,19 +183291,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00044c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00044c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02052c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02052c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Sc2"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02267" sboTerm="SBO:0000176" id="MAR02267" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02267" sboTerm="SBO:0000176" id="R_MAR02267" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -183275,7 +183312,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02267">
+            <rdf:Description rdf:about="#R_MAR02267">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.199"/>
@@ -183286,17 +183323,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02052c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02444c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02052c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02444c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00907c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01596c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00907c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01596c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR02268" sboTerm="SBO:0000176" id="MAR02268" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02268" sboTerm="SBO:0000176" id="R_MAR02268" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -183305,7 +183342,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02268">
+            <rdf:Description rdf:about="#R_MAR02268">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.330"/>
@@ -183316,19 +183353,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00907c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00907c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00802c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00802c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="spidey"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02269" sboTerm="SBO:0000176" id="MAR02269" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02269" sboTerm="SBO:0000176" id="R_MAR02269" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -183337,7 +183374,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02269">
+            <rdf:Description rdf:about="#R_MAR02269">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.134"/>
@@ -183348,11 +183385,11 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00802c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00802c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00067c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00067c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -183362,7 +183399,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02270" sboTerm="SBO:0000176" id="MAR02270" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02270" sboTerm="SBO:0000176" id="R_MAR02270" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -183371,7 +183408,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02270">
+            <rdf:Description rdf:about="#R_MAR02270">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.1.93"/>
@@ -183382,19 +183419,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00067c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00067c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03047c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03047c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Sc2"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02281" sboTerm="SBO:0000176" id="MAR02281" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02281" sboTerm="SBO:0000176" id="R_MAR02281" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -183402,7 +183439,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02281">
+            <rdf:Description rdf:about="#R_MAR02281">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.19.1"/>
@@ -183414,15 +183451,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02495c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02495c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00129c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00129c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -183431,7 +183468,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02282" sboTerm="SBO:0000176" id="MAR02282" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02282" sboTerm="SBO:0000176" id="R_MAR02282" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -183439,7 +183476,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02282">
+            <rdf:Description rdf:about="#R_MAR02282">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.19.1"/>
@@ -183450,15 +183487,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02495c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02495c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00118c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00118c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -183467,7 +183504,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02284" sboTerm="SBO:0000176" id="MAR02284" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02284" sboTerm="SBO:0000176" id="R_MAR02284" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -183475,7 +183512,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02284">
+            <rdf:Description rdf:about="#R_MAR02284">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.19.1"/>
@@ -183486,15 +183523,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02495c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02495c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01141c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01141c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -183503,7 +183540,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02286" sboTerm="SBO:0000176" id="MAR02286" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02286" sboTerm="SBO:0000176" id="R_MAR02286" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -183511,7 +183548,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02286">
+            <rdf:Description rdf:about="#R_MAR02286">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.19.1"/>
@@ -183523,15 +183560,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02678c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02678c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02677c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02677c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -183540,7 +183577,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02287" sboTerm="SBO:0000176" id="MAR02287" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02287" sboTerm="SBO:0000176" id="R_MAR02287" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -183548,7 +183585,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02287">
+            <rdf:Description rdf:about="#R_MAR02287">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.19.1"/>
@@ -183560,15 +183597,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02678c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02678c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01191c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01191c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -183577,7 +183614,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02292" sboTerm="SBO:0000176" id="MAR02292" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02292" sboTerm="SBO:0000176" id="R_MAR02292" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -183585,7 +183622,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02292">
+            <rdf:Description rdf:about="#R_MAR02292">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.19.1"/>
@@ -183597,15 +183634,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02941c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02941c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00020c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00020c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -183614,7 +183651,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02293" sboTerm="SBO:0000176" id="MAR02293" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02293" sboTerm="SBO:0000176" id="R_MAR02293" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -183622,7 +183659,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02293">
+            <rdf:Description rdf:about="#R_MAR02293">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.19.1"/>
@@ -183634,15 +183671,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02941c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02941c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01586c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01586c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -183651,7 +183688,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02294" sboTerm="SBO:0000176" id="MAR02294" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02294" sboTerm="SBO:0000176" id="R_MAR02294" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -183659,7 +183696,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02294">
+            <rdf:Description rdf:about="#R_MAR02294">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.19.1"/>
@@ -183671,15 +183708,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02941c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02941c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02647c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02647c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -183688,7 +183725,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02295" sboTerm="SBO:0000176" id="MAR02295" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02295" sboTerm="SBO:0000176" id="R_MAR02295" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -183696,7 +183733,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02295">
+            <rdf:Description rdf:about="#R_MAR02295">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.19.1"/>
@@ -183707,15 +183744,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02941c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02941c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00127c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00127c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -183724,7 +183761,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02296" sboTerm="SBO:0000176" id="MAR02296" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02296" sboTerm="SBO:0000176" id="R_MAR02296" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -183732,7 +183769,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02296">
+            <rdf:Description rdf:about="#R_MAR02296">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.19.1"/>
@@ -183743,15 +183780,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02941c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02941c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00116c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00116c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -183760,7 +183797,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02359" sboTerm="SBO:0000176" id="MAR02359" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02359" sboTerm="SBO:0000176" id="R_MAR02359" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -183768,7 +183805,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02359">
+            <rdf:Description rdf:about="#R_MAR02359">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.19.-"/>
@@ -183779,18 +183816,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02647c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02647c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00106c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00106c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR02365" sboTerm="SBO:0000176" id="MAR02365" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02365" sboTerm="SBO:0000176" id="R_MAR02365" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -183798,7 +183835,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02365">
+            <rdf:Description rdf:about="#R_MAR02365">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.19.-"/>
@@ -183809,18 +183846,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00123c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00123c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00101c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00101c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR02288" sboTerm="SBO:0000176" id="MAR02288" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02288" sboTerm="SBO:0000176" id="R_MAR02288" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -183828,7 +183865,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02288">
+            <rdf:Description rdf:about="#R_MAR02288">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.19.1"/>
@@ -183839,15 +183876,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02101c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02101c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00004c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00004c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -183856,7 +183893,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02289" sboTerm="SBO:0000176" id="MAR02289" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02289" sboTerm="SBO:0000176" id="R_MAR02289" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -183864,7 +183901,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02289">
+            <rdf:Description rdf:about="#R_MAR02289">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.19.1"/>
@@ -183876,15 +183913,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02101c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02101c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01237c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01237c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -183893,7 +183930,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00709" sboTerm="SBO:0000176" id="MAR00709" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00709" sboTerm="SBO:0000176" id="R_MAR00709" name="palmitoyl-CoA hydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -183902,7 +183939,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00709">
+            <rdf:Description rdf:about="#R_MAR00709">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.2.2"/>
@@ -183917,13 +183954,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02678x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02678x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01597x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02674x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02674x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -183933,7 +183970,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02150" sboTerm="SBO:0000176" id="MAR02150" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02150" sboTerm="SBO:0000176" id="R_MAR02150" name="acetyl-CoA:[acyl-carrier-protein] S-acetyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -183942,7 +183979,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02150">
+            <rdf:Description rdf:about="#R_MAR02150">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.85"/>
@@ -183956,18 +183993,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00184c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01261c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00184c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01258c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01258c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="FASN1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02151" sboTerm="SBO:0000176" id="MAR02151" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02151" sboTerm="SBO:0000176" id="R_MAR02151" name="Malonyl-CoA:[acyl-carrier-protein] S-malonyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -183976,7 +184013,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02151">
+            <rdf:Description rdf:about="#R_MAR02151">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.85"/>
@@ -183991,12 +184028,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00184c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02444c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00184c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02444c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02442c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02442c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -184005,7 +184042,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02172" sboTerm="SBO:0000176" id="MAR02172" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02172" sboTerm="SBO:0000176" id="R_MAR02172" name="dodecanoyl-[acyl-carrier-protein] hydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -184013,7 +184050,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02172">
+            <rdf:Description rdf:about="#R_MAR02172">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.2.14"/>
@@ -184027,19 +184064,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01728c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01728c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00184c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02344c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00184c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02344c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="FASN1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02177" sboTerm="SBO:0000176" id="MAR02177" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02177" sboTerm="SBO:0000176" id="R_MAR02177" name="tetradecanoyl-[acyl-carrier protein] hydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -184047,7 +184084,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02177">
+            <rdf:Description rdf:about="#R_MAR02177">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.2.14"/>
@@ -184061,19 +184098,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02972c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02972c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00184c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02494c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00184c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02494c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="FASN1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02182" sboTerm="SBO:0000176" id="MAR02182" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02182" sboTerm="SBO:0000176" id="R_MAR02182" name="hexadecanoyl-[acyl-carrier protein] hydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -184082,7 +184119,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02182">
+            <rdf:Description rdf:about="#R_MAR02182">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.2.14"/>
@@ -184098,19 +184135,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02115c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02115c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00184c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02674c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00184c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02674c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="FASN1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02248" sboTerm="SBO:0000176" id="MAR02248" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02248" sboTerm="SBO:0000176" id="R_MAR02248" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -184118,7 +184155,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02248">
+            <rdf:Description rdf:about="#R_MAR02248">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.2.14"/>
@@ -184130,19 +184167,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03048c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03048c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00184c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03051c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00184c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03051c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="FASN1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02253" sboTerm="SBO:0000176" id="MAR02253" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02253" sboTerm="SBO:0000176" id="R_MAR02253" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -184150,7 +184187,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02253">
+            <rdf:Description rdf:about="#R_MAR02253">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.2.14"/>
@@ -184162,19 +184199,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02687c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02687c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00184c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02690c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00184c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02690c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="FASN1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02258" sboTerm="SBO:0000176" id="MAR02258" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02258" sboTerm="SBO:0000176" id="R_MAR02258" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -184182,7 +184219,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02258">
+            <rdf:Description rdf:about="#R_MAR02258">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.2.14"/>
@@ -184194,19 +184231,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02099c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02099c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00184c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02456c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00184c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02456c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="FASN1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02437" sboTerm="SBO:0000176" id="MAR02437" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02437" sboTerm="SBO:0000176" id="R_MAR02437" name="linoleate:oxygen 9-oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -184214,7 +184251,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02437">
+            <rdf:Description rdf:about="#R_MAR02437">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R07057"/>
@@ -184226,14 +184263,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02387c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02387c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01217c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01217c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR02439" sboTerm="SBO:0000176" id="MAR02439" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02439" sboTerm="SBO:0000176" id="R_MAR02439" name="linoleate:oxygen 11S-oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -184242,7 +184279,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02439">
+            <rdf:Description rdf:about="#R_MAR02439">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.13.11.45"/>
@@ -184255,14 +184292,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02387c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02387c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00298c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00298c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR02441" sboTerm="SBO:0000176" id="MAR02441" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02441" sboTerm="SBO:0000176" id="R_MAR02441" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -184270,7 +184307,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02441">
+            <rdf:Description rdf:about="#R_MAR02441">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.11.1.9"/>
@@ -184281,14 +184318,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00337c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00337c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00336c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00336c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -184297,7 +184334,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02442" sboTerm="SBO:0000176" id="MAR02442" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02442" sboTerm="SBO:0000176" id="R_MAR02442" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -184306,7 +184343,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02442">
+            <rdf:Description rdf:about="#R_MAR02442">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR103890"/>
@@ -184317,15 +184354,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00337c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00337c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00983c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02614c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00983c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02614c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR02443" sboTerm="SBO:0000176" id="MAR02443" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02443" sboTerm="SBO:0000176" id="R_MAR02443" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -184333,7 +184370,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02443">
+            <rdf:Description rdf:about="#R_MAR02443">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_2443"/>
@@ -184343,17 +184380,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00337c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01824c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00337c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01824c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00363c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01826c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00363c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01826c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR02444" sboTerm="SBO:0000176" id="MAR02444" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02444" sboTerm="SBO:0000176" id="R_MAR02444" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -184362,7 +184399,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02444">
+            <rdf:Description rdf:about="#R_MAR02444">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/RE3414C"/>
@@ -184372,14 +184409,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00362c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02695c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00362c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02695c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00363c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00363c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR02445" sboTerm="SBO:0000176" id="MAR02445" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02445" sboTerm="SBO:0000176" id="R_MAR02445" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -184388,7 +184425,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02445">
+            <rdf:Description rdf:about="#R_MAR02445">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/RE3415C"/>
@@ -184398,13 +184435,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00313c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00313c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00363c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00363c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR02446" sboTerm="SBO:0000176" id="MAR02446" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02446" sboTerm="SBO:0000176" id="R_MAR02446" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -184413,7 +184450,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02446">
+            <rdf:Description rdf:about="#R_MAR02446">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/RE3407C"/>
@@ -184423,16 +184460,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00312c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02489c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00312c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02489c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00313c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01368c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00313c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01368c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR02447" sboTerm="SBO:0000176" id="MAR02447" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02447" sboTerm="SBO:0000176" id="R_MAR02447" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -184440,7 +184477,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02447">
+            <rdf:Description rdf:about="#R_MAR02447">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_2447"/>
@@ -184450,17 +184487,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00311c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01824c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00311c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01824c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00312c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01826c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00312c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01826c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR02448" sboTerm="SBO:0000176" id="MAR02448" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02448" sboTerm="SBO:0000176" id="R_MAR02448" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -184469,7 +184506,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02448">
+            <rdf:Description rdf:about="#R_MAR02448">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/RE3408C"/>
@@ -184479,15 +184516,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00311c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00311c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02641c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03036c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02641c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03036c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR02449" sboTerm="SBO:0000176" id="MAR02449" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02449" sboTerm="SBO:0000176" id="R_MAR02449" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -184496,7 +184533,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#meta_MAR02449">
+            <rdf:Description rdf:about="#meta_R_MAR02449">
               <bqbiol:is>
                 <rdf:Bag/>
               </bqbiol:is>
@@ -184504,15 +184541,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00311c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00311c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01218c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02147c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01218c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02147c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR02450" sboTerm="SBO:0000176" id="MAR02450" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02450" sboTerm="SBO:0000176" id="R_MAR02450" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -184521,7 +184558,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02450">
+            <rdf:Description rdf:about="#R_MAR02450">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/RE3412C"/>
@@ -184531,14 +184568,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01218c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01218c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00533c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00533c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR02451" sboTerm="SBO:0000176" id="MAR02451" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02451" sboTerm="SBO:0000176" id="R_MAR02451" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -184547,7 +184584,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02451">
+            <rdf:Description rdf:about="#R_MAR02451">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR103893"/>
@@ -184558,15 +184595,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00533c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00533c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01027c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01372c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM01027c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01372c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="3" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR02452" sboTerm="SBO:0000176" id="MAR02452" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02452" sboTerm="SBO:0000176" id="R_MAR02452" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -184575,7 +184612,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02452">
+            <rdf:Description rdf:about="#R_MAR02452">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR103892"/>
@@ -184586,15 +184623,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00533c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00533c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00731c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01372c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00731c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01372c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR02453" sboTerm="SBO:0000176" id="MAR02453" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02453" sboTerm="SBO:0000176" id="R_MAR02453" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -184603,7 +184640,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02453">
+            <rdf:Description rdf:about="#R_MAR02453">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR103656"/>
@@ -184614,14 +184651,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00983c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00983c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01027c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01027c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR02454" sboTerm="SBO:0000176" id="MAR02454" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02454" sboTerm="SBO:0000176" id="R_MAR02454" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -184630,7 +184667,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02454">
+            <rdf:Description rdf:about="#R_MAR02454">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR103891"/>
@@ -184641,13 +184678,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00731c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00731c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00988c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00988c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR02455" sboTerm="SBO:0000176" id="MAR02455" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02455" sboTerm="SBO:0000176" id="R_MAR02455" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -184655,7 +184692,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02455">
+            <rdf:Description rdf:about="#R_MAR02455">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.14.1"/>
@@ -184668,15 +184705,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02387c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02387c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01216c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01216c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -184686,7 +184723,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02456" sboTerm="SBO:0000176" id="MAR02456" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02456" sboTerm="SBO:0000176" id="R_MAR02456" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -184694,7 +184731,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02456">
+            <rdf:Description rdf:about="#R_MAR02456">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.14.1"/>
@@ -184707,15 +184744,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02387r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02387r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01216r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01216r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -184725,7 +184762,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02457" sboTerm="SBO:0000176" id="MAR02457" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02457" sboTerm="SBO:0000176" id="R_MAR02457" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -184733,7 +184770,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02457">
+            <rdf:Description rdf:about="#R_MAR02457">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.14.1"/>
@@ -184746,15 +184783,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02387c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02387c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00305c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00305c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -184764,7 +184801,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02458" sboTerm="SBO:0000176" id="MAR02458" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02458" sboTerm="SBO:0000176" id="R_MAR02458" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -184772,7 +184809,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02458">
+            <rdf:Description rdf:about="#R_MAR02458">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.14.1"/>
@@ -184785,15 +184822,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02387r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02387r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00305r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00305r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -184803,7 +184840,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02459" sboTerm="SBO:0000176" id="MAR02459" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02459" sboTerm="SBO:0000176" id="R_MAR02459" name="9(10)-EpOME hydrolase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -184812,7 +184849,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02459">
+            <rdf:Description rdf:about="#R_MAR02459">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.3.2.9"/>
@@ -184826,11 +184863,11 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01216c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01216c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01220c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01220c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -184840,7 +184877,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02460" sboTerm="SBO:0000176" id="MAR02460" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02460" sboTerm="SBO:0000176" id="R_MAR02460" name="9(10)-EpOME hydrolase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -184849,7 +184886,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02460">
+            <rdf:Description rdf:about="#R_MAR02460">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.3.2.9"/>
@@ -184863,11 +184900,11 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01216r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01216r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01220r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01220r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -184877,7 +184914,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02461" sboTerm="SBO:0000176" id="MAR02461" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02461" sboTerm="SBO:0000176" id="R_MAR02461" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -184886,7 +184923,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02461">
+            <rdf:Description rdf:about="#R_MAR02461">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.17"/>
@@ -184897,13 +184934,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01220c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03109c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01220c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03109c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01240c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01240c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -184923,7 +184960,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02462" sboTerm="SBO:0000176" id="MAR02462" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02462" sboTerm="SBO:0000176" id="R_MAR02462" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -184932,7 +184969,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02462">
+            <rdf:Description rdf:about="#R_MAR02462">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.17"/>
@@ -184944,13 +184981,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01220r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03109r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01220r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03109r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01240r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01240r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -184970,7 +185007,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02463" sboTerm="SBO:0000176" id="MAR02463" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02463" sboTerm="SBO:0000176" id="R_MAR02463" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -184979,7 +185016,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02463">
+            <rdf:Description rdf:about="#R_MAR02463">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.17"/>
@@ -184990,13 +185027,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00274c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00274c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01220c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03109c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01220c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03109c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -185016,7 +185053,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02464" sboTerm="SBO:0000176" id="MAR02464" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02464" sboTerm="SBO:0000176" id="R_MAR02464" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -185025,7 +185062,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02464">
+            <rdf:Description rdf:about="#R_MAR02464">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.17"/>
@@ -185037,13 +185074,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01220r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03109r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01220r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03109r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00274r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00274r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -185063,7 +185100,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02465" sboTerm="SBO:0000176" id="MAR02465" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02465" sboTerm="SBO:0000176" id="R_MAR02465" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -185072,7 +185109,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02465">
+            <rdf:Description rdf:about="#R_MAR02465">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.3.2.9"/>
@@ -185085,11 +185122,11 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00305c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00305c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00314c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00314c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -185099,7 +185136,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02466" sboTerm="SBO:0000176" id="MAR02466" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02466" sboTerm="SBO:0000176" id="R_MAR02466" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -185108,7 +185145,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02466">
+            <rdf:Description rdf:about="#R_MAR02466">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.3.2.9"/>
@@ -185121,11 +185158,11 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00305r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00305r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00314r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00314r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -185135,7 +185172,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02467" sboTerm="SBO:0000176" id="MAR02467" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02467" sboTerm="SBO:0000176" id="R_MAR02467" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -185144,7 +185181,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02467">
+            <rdf:Description rdf:about="#R_MAR02467">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.17"/>
@@ -185155,13 +185192,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00314c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03109c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00314c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03109c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00323c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00323c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -185181,7 +185218,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02468" sboTerm="SBO:0000176" id="MAR02468" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02468" sboTerm="SBO:0000176" id="R_MAR02468" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -185190,7 +185227,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02468">
+            <rdf:Description rdf:about="#R_MAR02468">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.17"/>
@@ -185202,13 +185239,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00314r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03109r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00314r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03109r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00323r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00323r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -185228,7 +185265,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02469" sboTerm="SBO:0000176" id="MAR02469" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02469" sboTerm="SBO:0000176" id="R_MAR02469" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -185237,7 +185274,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02469">
+            <rdf:Description rdf:about="#R_MAR02469">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.17"/>
@@ -185248,13 +185285,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00314c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03109c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00314c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03109c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00327c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00327c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -185274,7 +185311,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02470" sboTerm="SBO:0000176" id="MAR02470" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02470" sboTerm="SBO:0000176" id="R_MAR02470" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -185283,7 +185320,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02470">
+            <rdf:Description rdf:about="#R_MAR02470">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.17"/>
@@ -185295,13 +185332,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00314r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03109r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00314r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03109r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00327r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00327r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -185321,7 +185358,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06397" sboTerm="SBO:0000176" id="MAR06397" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06397" sboTerm="SBO:0000176" id="R_MAR06397" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -185329,7 +185366,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06397">
+            <rdf:Description rdf:about="#R_MAR06397">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.8.1.4"/>
@@ -185340,19 +185377,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02394c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02394c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01702c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01702c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG7430"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06398" sboTerm="SBO:0000176" id="MAR06398" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06398" sboTerm="SBO:0000176" id="R_MAR06398" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -185361,7 +185398,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06398">
+            <rdf:Description rdf:about="#R_MAR06398">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.7.63"/>
@@ -185374,19 +185411,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02394c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02394c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02398c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02398c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG44243"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06399" sboTerm="SBO:0000176" id="MAR06399" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06399" sboTerm="SBO:0000176" id="R_MAR06399" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -185394,7 +185431,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06399">
+            <rdf:Description rdf:about="#R_MAR06399">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.7.63"/>
@@ -185407,19 +185444,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01350c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02398c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01350c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02398c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00209c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01334c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00209c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG44243"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06400" sboTerm="SBO:0000176" id="MAR06400" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06400" sboTerm="SBO:0000176" id="R_MAR06400" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -185427,7 +185464,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06400">
+            <rdf:Description rdf:about="#R_MAR06400">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.8.1.8"/>
@@ -185441,19 +185478,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="5" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="7" constant="true"/>
-          <speciesReference species="MAM02643c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02682c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02877c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="5" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="7" constant="true"/>
+          <speciesReference species="M_MAM02643c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02682c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02877c" stoichiometry="2" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01098c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="6" constant="true"/>
-          <speciesReference species="MAM02397c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02471c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="7" constant="true"/>
-          <speciesReference species="MAM02681c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01098c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="6" constant="true"/>
+          <speciesReference species="M_MAM02397c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02471c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="7" constant="true"/>
+          <speciesReference species="M_MAM02681c" stoichiometry="2" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -185462,7 +185499,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06401" sboTerm="SBO:0000176" id="MAR06401" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06401" sboTerm="SBO:0000176" id="R_MAR06401" name="lipoyl-[acp]:protein N6-lipoyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -185470,7 +185507,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06401">
+            <rdf:Description rdf:about="#R_MAR06401">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.181"/>
@@ -185483,18 +185520,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01350c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02397c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01350c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02397c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00184c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00209c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00184c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00209c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG9804"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06402" sboTerm="SBO:0000176" id="MAR06402" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06402" sboTerm="SBO:0000176" id="R_MAR06402" name="octanoyl-[acp]:protein N6-octanoyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -185502,7 +185539,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06402">
+            <rdf:Description rdf:about="#R_MAR06402">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.181"/>
@@ -185515,18 +185552,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01350c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02643c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01350c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02643c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00184c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00210c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00184c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00210c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG9804"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06403" sboTerm="SBO:0000176" id="MAR06403" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06403" sboTerm="SBO:0000176" id="R_MAR06403" name="[protein]-N6-(octanoyl)-L-lysine:an [Fe-S] cluster scaffold protein carrying a [4Fe-4S]2+ cluster sulfurtransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -185534,7 +185571,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06403">
+            <rdf:Description rdf:about="#R_MAR06403">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.8.1.8"/>
@@ -185547,25 +185584,25 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00210c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="5" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="7" constant="true"/>
-          <speciesReference species="MAM02682c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02877c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM00210c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="5" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="7" constant="true"/>
+          <speciesReference species="M_MAM02682c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02877c" stoichiometry="2" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00209c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01098c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="6" constant="true"/>
-          <speciesReference species="MAM02471c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="7" constant="true"/>
-          <speciesReference species="MAM02681c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM00209c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01098c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="6" constant="true"/>
+          <speciesReference species="M_MAM02471c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="7" constant="true"/>
+          <speciesReference species="M_MAM02681c" stoichiometry="2" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Las"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06404" sboTerm="SBO:0000176" id="MAR06404" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06404" sboTerm="SBO:0000176" id="R_MAR06404" name="protein N6-(dihydrolipoyl)lysine:NAD+ oxidoreductase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -185573,7 +185610,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06404">
+            <rdf:Description rdf:about="#R_MAR06404">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.8.1.4"/>
@@ -185586,19 +185623,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00209c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00209c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00208c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00208c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG7430"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02472" sboTerm="SBO:0000176" id="MAR02472" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02472" sboTerm="SBO:0000176" id="R_MAR02472" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -185606,7 +185643,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02472">
+            <rdf:Description rdf:about="#R_MAR02472">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.19.-"/>
@@ -185618,18 +185655,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02390c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02390c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00108c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00108c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR02475" sboTerm="SBO:0000176" id="MAR02475" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02475" sboTerm="SBO:0000176" id="R_MAR02475" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -185638,7 +185675,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02475">
+            <rdf:Description rdf:about="#R_MAR02475">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.199"/>
@@ -185651,17 +185688,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00108c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02444c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00108c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02444c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00811c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01596c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00811c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01596c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR02478" sboTerm="SBO:0000176" id="MAR02478" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02478" sboTerm="SBO:0000176" id="R_MAR02478" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -185670,7 +185707,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02478">
+            <rdf:Description rdf:about="#R_MAR02478">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.330"/>
@@ -185682,19 +185719,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00811c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00811c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00708c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00708c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="spidey"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02480" sboTerm="SBO:0000176" id="MAR02480" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02480" sboTerm="SBO:0000176" id="R_MAR02480" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -185703,7 +185740,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02480">
+            <rdf:Description rdf:about="#R_MAR02480">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.134"/>
@@ -185715,11 +185752,11 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00708c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00708c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01769c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01769c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -185729,7 +185766,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02482" sboTerm="SBO:0000176" id="MAR02482" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02482" sboTerm="SBO:0000176" id="R_MAR02482" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -185738,7 +185775,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02482">
+            <rdf:Description rdf:about="#R_MAR02482">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.1.93"/>
@@ -185750,19 +185787,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01769c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01769c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00125c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00125c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Sc2"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02484" sboTerm="SBO:0000176" id="MAR02484" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02484" sboTerm="SBO:0000176" id="R_MAR02484" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -185770,7 +185807,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02484">
+            <rdf:Description rdf:about="#R_MAR02484">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.19.-"/>
@@ -185782,18 +185819,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00125c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00125c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00103c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00103c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR02486" sboTerm="SBO:0000176" id="MAR02486" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02486" sboTerm="SBO:0000176" id="R_MAR02486" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -185802,7 +185839,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02486">
+            <rdf:Description rdf:about="#R_MAR02486">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.199"/>
@@ -185815,17 +185852,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00103c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02444c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00103c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02444c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00863c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01596c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00863c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01596c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR02489" sboTerm="SBO:0000176" id="MAR02489" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02489" sboTerm="SBO:0000176" id="R_MAR02489" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -185834,7 +185871,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02489">
+            <rdf:Description rdf:about="#R_MAR02489">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.330"/>
@@ -185846,19 +185883,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00863c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00863c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00713c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00713c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="spidey"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02491" sboTerm="SBO:0000176" id="MAR02491" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02491" sboTerm="SBO:0000176" id="R_MAR02491" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -185867,7 +185904,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02491">
+            <rdf:Description rdf:about="#R_MAR02491">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.134"/>
@@ -185879,11 +185916,11 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00713c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00713c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00679c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00679c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -185893,7 +185930,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02493" sboTerm="SBO:0000176" id="MAR02493" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02493" sboTerm="SBO:0000176" id="R_MAR02493" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -185902,7 +185939,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02493">
+            <rdf:Description rdf:about="#R_MAR02493">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.1.93"/>
@@ -185914,19 +185951,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00679c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00679c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00121c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00121c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Sc2"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02495" sboTerm="SBO:0000176" id="MAR02495" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02495" sboTerm="SBO:0000176" id="R_MAR02495" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -185934,7 +185971,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02495">
+            <rdf:Description rdf:about="#R_MAR02495">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/HMR_2495"/>
@@ -185945,18 +185982,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00121c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00121c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00095c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00095c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR02497" sboTerm="SBO:0000176" id="MAR02497" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02497" sboTerm="SBO:0000176" id="R_MAR02497" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -185965,7 +186002,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02497">
+            <rdf:Description rdf:about="#R_MAR02497">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.199"/>
@@ -185977,17 +186014,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00121c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02444c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00121c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02444c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00902c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01596c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00902c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01596c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR02499" sboTerm="SBO:0000176" id="MAR02499" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02499" sboTerm="SBO:0000176" id="R_MAR02499" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -185996,7 +186033,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02499">
+            <rdf:Description rdf:about="#R_MAR02499">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.330"/>
@@ -186008,19 +186045,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00902c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00902c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00718c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00718c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="spidey"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02501" sboTerm="SBO:0000176" id="MAR02501" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02501" sboTerm="SBO:0000176" id="R_MAR02501" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -186029,7 +186066,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02501">
+            <rdf:Description rdf:about="#R_MAR02501">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.134"/>
@@ -186041,11 +186078,11 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00718c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00718c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00680c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00680c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -186055,7 +186092,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02503" sboTerm="SBO:0000176" id="MAR02503" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02503" sboTerm="SBO:0000176" id="R_MAR02503" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -186064,7 +186101,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02503">
+            <rdf:Description rdf:about="#R_MAR02503">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.1.93"/>
@@ -186076,19 +186113,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00680c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00680c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00134c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00134c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Sc2"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02505" sboTerm="SBO:0000176" id="MAR02505" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02505" sboTerm="SBO:0000176" id="R_MAR02505" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -186096,7 +186133,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02505">
+            <rdf:Description rdf:about="#R_MAR02505">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.19.3"/>
@@ -186107,18 +186144,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00134c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00134c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00113c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02552c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00113c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02552c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR02510" sboTerm="SBO:0000176" id="MAR02510" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02510" sboTerm="SBO:0000176" id="R_MAR02510" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -186127,7 +186164,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02510">
+            <rdf:Description rdf:about="#R_MAR02510">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.3.6"/>
@@ -186138,12 +186175,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00113x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00113x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01664x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02041x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01664x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -186152,7 +186189,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02511" sboTerm="SBO:0000176" id="MAR02511" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02511" sboTerm="SBO:0000176" id="R_MAR02511" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -186161,7 +186198,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02511">
+            <rdf:Description rdf:about="#R_MAR02511">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.17"/>
@@ -186172,14 +186209,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01664x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01664x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00801x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00801x" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR02512" sboTerm="SBO:0000176" id="MAR02512" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02512" sboTerm="SBO:0000176" id="R_MAR02512" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -186188,7 +186225,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02512">
+            <rdf:Description rdf:about="#R_MAR02512">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.35"/>
@@ -186200,19 +186237,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00801x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00801x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00814x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00814x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Mfe2"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02513" sboTerm="SBO:0000176" id="MAR02513" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02513" sboTerm="SBO:0000176" id="R_MAR02513" name="(4Z,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA:acetyl-CoA C-acyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -186221,7 +186258,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02513">
+            <rdf:Description rdf:about="#R_MAR02513">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.16"/>
@@ -186233,18 +186270,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00814x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00814x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00095x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01261x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00095x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="didum"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02514" sboTerm="SBO:0000185" id="MAR02514" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02514" sboTerm="SBO:0000185" id="R_MAR02514" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -186252,7 +186289,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02514">
+            <rdf:Description rdf:about="#R_MAR02514">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/C226COAtx"/>
@@ -186262,13 +186299,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00095c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00095c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00095x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00095x" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR02515" sboTerm="SBO:0000176" id="MAR02515" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02515" sboTerm="SBO:0000176" id="R_MAR02515" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -186277,7 +186314,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02515">
+            <rdf:Description rdf:about="#R_MAR02515">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.199"/>
@@ -186289,17 +186326,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00125c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02444c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00125c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02444c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00861c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01596c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00861c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01596c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR02516" sboTerm="SBO:0000176" id="MAR02516" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02516" sboTerm="SBO:0000176" id="R_MAR02516" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -186308,7 +186345,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02516">
+            <rdf:Description rdf:about="#R_MAR02516">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.330"/>
@@ -186320,19 +186357,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00861c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00861c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00711c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00711c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="spidey"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02518" sboTerm="SBO:0000176" id="MAR02518" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02518" sboTerm="SBO:0000176" id="R_MAR02518" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -186341,7 +186378,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02518">
+            <rdf:Description rdf:about="#R_MAR02518">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.134"/>
@@ -186353,11 +186390,11 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00711c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00711c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03002c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03002c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -186367,7 +186404,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02520" sboTerm="SBO:0000176" id="MAR02520" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02520" sboTerm="SBO:0000176" id="R_MAR02520" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -186376,7 +186413,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02520">
+            <rdf:Description rdf:about="#R_MAR02520">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.1.93"/>
@@ -186388,19 +186425,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03002c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03002c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00262c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00262c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Sc2"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02522" sboTerm="SBO:0000176" id="MAR02522" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02522" sboTerm="SBO:0000176" id="R_MAR02522" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -186409,7 +186446,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02522">
+            <rdf:Description rdf:about="#R_MAR02522">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.199"/>
@@ -186421,17 +186458,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00262c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02444c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00262c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02444c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00901c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01596c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00901c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01596c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR02524" sboTerm="SBO:0000176" id="MAR02524" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02524" sboTerm="SBO:0000176" id="R_MAR02524" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -186440,7 +186477,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02524">
+            <rdf:Description rdf:about="#R_MAR02524">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.330"/>
@@ -186452,19 +186489,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00901c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00901c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00716c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00716c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="spidey"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02526" sboTerm="SBO:0000176" id="MAR02526" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02526" sboTerm="SBO:0000176" id="R_MAR02526" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -186473,7 +186510,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02526">
+            <rdf:Description rdf:about="#R_MAR02526">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.134"/>
@@ -186485,11 +186522,11 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00716c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00716c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03003c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03003c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -186499,7 +186536,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02528" sboTerm="SBO:0000176" id="MAR02528" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02528" sboTerm="SBO:0000176" id="R_MAR02528" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -186508,7 +186545,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02528">
+            <rdf:Description rdf:about="#R_MAR02528">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.1.93"/>
@@ -186520,19 +186557,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03003c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03003c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00317c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00317c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Sc2"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02530" sboTerm="SBO:0000176" id="MAR02530" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02530" sboTerm="SBO:0000176" id="R_MAR02530" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -186541,7 +186578,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02530">
+            <rdf:Description rdf:about="#R_MAR02530">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.199"/>
@@ -186553,17 +186590,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02390c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02444c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02390c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02444c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00869c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01596c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00869c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01596c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR02533" sboTerm="SBO:0000176" id="MAR02533" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02533" sboTerm="SBO:0000176" id="R_MAR02533" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -186572,7 +186609,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02533">
+            <rdf:Description rdf:about="#R_MAR02533">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.330"/>
@@ -186584,19 +186621,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00869c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00869c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00086c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00086c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="spidey"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02535" sboTerm="SBO:0000176" id="MAR02535" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02535" sboTerm="SBO:0000176" id="R_MAR02535" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -186605,7 +186642,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02535">
+            <rdf:Description rdf:about="#R_MAR02535">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.134"/>
@@ -186617,11 +186654,11 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00086c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00086c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03005c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03005c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -186631,7 +186668,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02537" sboTerm="SBO:0000176" id="MAR02537" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02537" sboTerm="SBO:0000176" id="R_MAR02537" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -186640,7 +186677,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02537">
+            <rdf:Description rdf:about="#R_MAR02537">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.1.93"/>
@@ -186652,19 +186689,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03005c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03005c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00012c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00012c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Sc2"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02540" sboTerm="SBO:0000176" id="MAR02540" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02540" sboTerm="SBO:0000176" id="R_MAR02540" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -186673,7 +186710,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02540">
+            <rdf:Description rdf:about="#R_MAR02540">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.199"/>
@@ -186685,17 +186722,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00012c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02444c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00012c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02444c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00862c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01596c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00862c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01596c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR02541" sboTerm="SBO:0000176" id="MAR02541" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02541" sboTerm="SBO:0000176" id="R_MAR02541" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -186704,7 +186741,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02541">
+            <rdf:Description rdf:about="#R_MAR02541">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.330"/>
@@ -186716,19 +186753,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00862c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00862c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00712c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00712c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="spidey"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02542" sboTerm="SBO:0000176" id="MAR02542" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02542" sboTerm="SBO:0000176" id="R_MAR02542" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -186737,7 +186774,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02542">
+            <rdf:Description rdf:about="#R_MAR02542">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.134"/>
@@ -186749,11 +186786,11 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00712c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00712c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03006c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03006c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -186763,7 +186800,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02543" sboTerm="SBO:0000176" id="MAR02543" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02543" sboTerm="SBO:0000176" id="R_MAR02543" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -186772,7 +186809,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02543">
+            <rdf:Description rdf:about="#R_MAR02543">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.1.93"/>
@@ -186784,19 +186821,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03006c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03006c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00343c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00343c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Sc2"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02545" sboTerm="SBO:0000176" id="MAR02545" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02545" sboTerm="SBO:0000176" id="R_MAR02545" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -186805,7 +186842,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02545">
+            <rdf:Description rdf:about="#R_MAR02545">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR103927"/>
@@ -186816,15 +186853,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01041c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01041c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="2" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR02546" sboTerm="SBO:0000176" id="MAR02546" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02546" sboTerm="SBO:0000176" id="R_MAR02546" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -186833,7 +186870,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02546">
+            <rdf:Description rdf:about="#R_MAR02546">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.184"/>
@@ -186845,19 +186882,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01125c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01125c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Dhrs4"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02548" sboTerm="SBO:0000176" id="MAR02548" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02548" sboTerm="SBO:0000176" id="R_MAR02548" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -186866,7 +186903,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02548">
+            <rdf:Description rdf:about="#R_MAR02548">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.184"/>
@@ -186878,19 +186915,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01039x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01039x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01125x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01125x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Dhrs4"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02549" sboTerm="SBO:0000176" id="MAR02549" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02549" sboTerm="SBO:0000176" id="R_MAR02549" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -186899,7 +186936,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02549">
+            <rdf:Description rdf:about="#R_MAR02549">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR103922"/>
@@ -186910,14 +186947,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01041c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01041c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02363c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02363c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR02550" sboTerm="SBO:0000176" id="MAR02550" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02550" sboTerm="SBO:0000176" id="R_MAR02550" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -186926,7 +186963,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02550">
+            <rdf:Description rdf:about="#R_MAR02550">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR103926"/>
@@ -186937,14 +186974,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02363c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02363c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01049c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01049c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR02551" sboTerm="SBO:0000176" id="MAR02551" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02551" sboTerm="SBO:0000176" id="R_MAR02551" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -186953,7 +186990,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02551">
+            <rdf:Description rdf:about="#R_MAR02551">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.3.2.6"/>
@@ -186965,17 +187002,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02363c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02363c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02365c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02365c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG10602"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02556" sboTerm="SBO:0000176" id="MAR02556" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02556" sboTerm="SBO:0000176" id="R_MAR02556" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -186984,7 +187021,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02556">
+            <rdf:Description rdf:about="#R_MAR02556">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.2.2"/>
@@ -186996,15 +187033,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02367c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02367c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01974c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02368c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01974c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02368c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR02558" sboTerm="SBO:0000176" id="MAR02558" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02558" sboTerm="SBO:0000176" id="R_MAR02558" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -187012,7 +187049,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02558">
+            <rdf:Description rdf:about="#R_MAR02558">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_2558"/>
@@ -187022,13 +187059,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00375c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00375c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00379c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00379c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR02559" sboTerm="SBO:0000176" id="MAR02559" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02559" sboTerm="SBO:0000176" id="R_MAR02559" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -187037,7 +187074,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02559">
+            <rdf:Description rdf:about="#R_MAR02559">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR103924"/>
@@ -187047,15 +187084,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00376c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00376c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00379c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM00379c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="2" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR02560" sboTerm="SBO:0000176" id="MAR02560" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02560" sboTerm="SBO:0000176" id="R_MAR02560" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -187063,7 +187100,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02560">
+            <rdf:Description rdf:about="#R_MAR02560">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_2560"/>
@@ -187073,15 +187110,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00373c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00373c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00375c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM00375c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="2" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR02562" sboTerm="SBO:0000176" id="MAR02562" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02562" sboTerm="SBO:0000176" id="R_MAR02562" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -187090,7 +187127,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02562">
+            <rdf:Description rdf:about="#R_MAR02562">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.3.2.9"/>
@@ -187103,11 +187140,11 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01038c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01038c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00389c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00389c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -187117,7 +187154,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02563" sboTerm="SBO:0000176" id="MAR02563" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02563" sboTerm="SBO:0000176" id="R_MAR02563" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -187126,7 +187163,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02563">
+            <rdf:Description rdf:about="#R_MAR02563">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.3.2.9"/>
@@ -187139,11 +187176,11 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01038c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01038c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00387c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00387c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -187153,7 +187190,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02567" sboTerm="SBO:0000176" id="MAR02567" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02567" sboTerm="SBO:0000176" id="R_MAR02567" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -187161,7 +187198,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02567">
+            <rdf:Description rdf:about="#R_MAR02567">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_2567"/>
@@ -187171,15 +187208,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00373n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00373n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040n" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00375n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039n" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM00375n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039n" stoichiometry="2" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR02571" sboTerm="SBO:0000176" id="MAR02571" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02571" sboTerm="SBO:0000176" id="R_MAR02571" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -187187,7 +187224,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02571">
+            <rdf:Description rdf:about="#R_MAR02571">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_2571"/>
@@ -187197,15 +187234,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00373r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00373r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00375r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039r" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM00375r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="2" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR02573" sboTerm="SBO:0000176" id="MAR02573" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02573" sboTerm="SBO:0000176" id="R_MAR02573" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -187214,7 +187251,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02573">
+            <rdf:Description rdf:about="#R_MAR02573">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.3.2.9"/>
@@ -187227,11 +187264,11 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01038r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01038r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00387r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00387r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -187241,7 +187278,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02574" sboTerm="SBO:0000176" id="MAR02574" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02574" sboTerm="SBO:0000176" id="R_MAR02574" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -187250,7 +187287,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02574">
+            <rdf:Description rdf:about="#R_MAR02574">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.3.2.9"/>
@@ -187263,11 +187300,11 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01038r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01038r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00389r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00389r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -187277,7 +187314,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02577" sboTerm="SBO:0000176" id="MAR02577" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02577" sboTerm="SBO:0000176" id="R_MAR02577" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -187285,7 +187322,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02577">
+            <rdf:Description rdf:about="#R_MAR02577">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_2577"/>
@@ -187295,15 +187332,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00373x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00373x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00375x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039x" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM00375x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039x" stoichiometry="2" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR02579" sboTerm="SBO:0000176" id="MAR02579" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02579" sboTerm="SBO:0000176" id="R_MAR02579" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -187312,7 +187349,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02579">
+            <rdf:Description rdf:about="#R_MAR02579">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.3.2.9"/>
@@ -187325,11 +187362,11 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01038x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01038x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00387x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00387x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -187339,7 +187376,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02580" sboTerm="SBO:0000176" id="MAR02580" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02580" sboTerm="SBO:0000176" id="R_MAR02580" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -187348,7 +187385,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02580">
+            <rdf:Description rdf:about="#R_MAR02580">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.3.2.9"/>
@@ -187361,11 +187398,11 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01038x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01038x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00389x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00389x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -187375,7 +187412,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02581" sboTerm="SBO:0000176" id="MAR02581" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02581" sboTerm="SBO:0000176" id="R_MAR02581" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -187383,7 +187420,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02581">
+            <rdf:Description rdf:about="#R_MAR02581">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.99.1"/>
@@ -187394,21 +187431,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01784c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01784c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="2" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02716c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02716c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="TBCB"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02582" sboTerm="SBO:0000176" id="MAR02582" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02582" sboTerm="SBO:0000176" id="R_MAR02582" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -187416,7 +187453,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02582">
+            <rdf:Description rdf:about="#R_MAR02582">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.99.1"/>
@@ -187427,21 +187464,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01784n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630n" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01784n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630n" stoichiometry="2" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02716n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02716n" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="TBCB"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02583" sboTerm="SBO:0000176" id="MAR02583" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02583" sboTerm="SBO:0000176" id="R_MAR02583" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -187450,7 +187487,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02583">
+            <rdf:Description rdf:about="#R_MAR02583">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/5.3.99.3"/>
@@ -187462,10 +187499,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02716c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02716c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02787c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02787c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -187476,7 +187513,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02584" sboTerm="SBO:0000176" id="MAR02584" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02584" sboTerm="SBO:0000176" id="R_MAR02584" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -187485,7 +187522,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02584">
+            <rdf:Description rdf:about="#R_MAR02584">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/5.3.99.3"/>
@@ -187497,10 +187534,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02716n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02716n" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02787n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02787n" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -187511,7 +187548,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02587" sboTerm="SBO:0000176" id="MAR02587" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02587" sboTerm="SBO:0000176" id="R_MAR02587" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -187520,7 +187557,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02587">
+            <rdf:Description rdf:about="#R_MAR02587">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR103932"/>
@@ -187531,14 +187568,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01046c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01056c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01056c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR02368" sboTerm="SBO:0000176" id="MAR02368" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02368" sboTerm="SBO:0000176" id="R_MAR02368" name="linoleoyl-CoA,ferrocytochrome b5:oxygen oxidoreductase (6,7 cis-dehydrogenating)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -187546,7 +187583,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02368">
+            <rdf:Description rdf:about="#R_MAR02368">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.19.3"/>
@@ -187560,18 +187597,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02391c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02391c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01934c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01934c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR02371" sboTerm="SBO:0000176" id="MAR02371" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02371" sboTerm="SBO:0000176" id="R_MAR02371" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -187580,7 +187617,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02371">
+            <rdf:Description rdf:about="#R_MAR02371">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.199"/>
@@ -187592,17 +187629,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01934c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02444c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01934c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02444c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00859c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01596c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00859c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01596c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR02374" sboTerm="SBO:0000176" id="MAR02374" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02374" sboTerm="SBO:0000176" id="R_MAR02374" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -187610,7 +187647,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02374">
+            <rdf:Description rdf:about="#R_MAR02374">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_2374"/>
@@ -187620,16 +187657,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00859c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00859c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00710c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00710c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR02376" sboTerm="SBO:0000176" id="MAR02376" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02376" sboTerm="SBO:0000176" id="R_MAR02376" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -187637,7 +187674,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02376">
+            <rdf:Description rdf:about="#R_MAR02376">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_2376"/>
@@ -187647,14 +187684,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00710c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00710c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03029c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03029c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR02378" sboTerm="SBO:0000176" id="MAR02378" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02378" sboTerm="SBO:0000176" id="R_MAR02378" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -187663,7 +187700,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02378">
+            <rdf:Description rdf:about="#R_MAR02378">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.1.93"/>
@@ -187675,19 +187712,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03029c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03029c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01697c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01697c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Sc2"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02380" sboTerm="SBO:0000176" id="MAR02380" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02380" sboTerm="SBO:0000176" id="R_MAR02380" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -187695,7 +187732,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02380">
+            <rdf:Description rdf:about="#R_MAR02380">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.19.-"/>
@@ -187707,18 +187744,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01697c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01697c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01364c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01364c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR02383" sboTerm="SBO:0000176" id="MAR02383" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02383" sboTerm="SBO:0000176" id="R_MAR02383" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -187727,7 +187764,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02383">
+            <rdf:Description rdf:about="#R_MAR02383">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.199"/>
@@ -187741,17 +187778,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01364c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02444c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01364c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02444c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00864c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01596c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00864c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01596c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR02387" sboTerm="SBO:0000176" id="MAR02387" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02387" sboTerm="SBO:0000176" id="R_MAR02387" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -187760,7 +187797,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02387">
+            <rdf:Description rdf:about="#R_MAR02387">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.330"/>
@@ -187772,19 +187809,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00864c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00864c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00714c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00714c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="spidey"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02389" sboTerm="SBO:0000176" id="MAR02389" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02389" sboTerm="SBO:0000176" id="R_MAR02389" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -187793,7 +187830,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02389">
+            <rdf:Description rdf:about="#R_MAR02389">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.134"/>
@@ -187805,11 +187842,11 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00714c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00714c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00074c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00074c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -187819,7 +187856,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02391" sboTerm="SBO:0000176" id="MAR02391" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02391" sboTerm="SBO:0000176" id="R_MAR02391" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -187827,7 +187864,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02391">
+            <rdf:Description rdf:about="#R_MAR02391">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_2391"/>
@@ -187839,16 +187876,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00074c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00074c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00119c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00119c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR02393" sboTerm="SBO:0000176" id="MAR02393" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02393" sboTerm="SBO:0000176" id="R_MAR02393" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -187856,7 +187893,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02393">
+            <rdf:Description rdf:about="#R_MAR02393">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_2393"/>
@@ -187866,18 +187903,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00119c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00119c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00093c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00093c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR02395" sboTerm="SBO:0000176" id="MAR02395" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02395" sboTerm="SBO:0000176" id="R_MAR02395" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -187885,7 +187922,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02395">
+            <rdf:Description rdf:about="#R_MAR02395">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.199"/>
@@ -187896,17 +187933,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00119c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02444c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00119c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02444c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00903c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01596c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00903c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01596c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR02397" sboTerm="SBO:0000176" id="MAR02397" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02397" sboTerm="SBO:0000176" id="R_MAR02397" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -187915,7 +187952,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02397">
+            <rdf:Description rdf:about="#R_MAR02397">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.330"/>
@@ -187927,19 +187964,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00903c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00903c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00716c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00716c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="spidey"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02399" sboTerm="SBO:0000176" id="MAR02399" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02399" sboTerm="SBO:0000176" id="R_MAR02399" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -187948,7 +187985,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02399">
+            <rdf:Description rdf:about="#R_MAR02399">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.134"/>
@@ -187960,11 +187997,11 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00716c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00716c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00681c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00681c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -187974,7 +188011,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02401" sboTerm="SBO:0000176" id="MAR02401" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02401" sboTerm="SBO:0000176" id="R_MAR02401" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -187983,7 +188020,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02401">
+            <rdf:Description rdf:about="#R_MAR02401">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.1.93"/>
@@ -187994,19 +188031,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00681c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00681c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00131c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00131c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Sc2"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02403" sboTerm="SBO:0000176" id="MAR02403" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02403" sboTerm="SBO:0000176" id="R_MAR02403" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -188014,7 +188051,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02403">
+            <rdf:Description rdf:about="#R_MAR02403">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_2403"/>
@@ -188024,18 +188061,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00131c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00131c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00110c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00110c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR02408" sboTerm="SBO:0000176" id="MAR02408" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02408" sboTerm="SBO:0000176" id="R_MAR02408" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -188044,7 +188081,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02408">
+            <rdf:Description rdf:about="#R_MAR02408">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.3.6"/>
@@ -188055,12 +188092,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00110x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00110x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02041x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03028x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03028x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -188069,7 +188106,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02409" sboTerm="SBO:0000176" id="MAR02409" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02409" sboTerm="SBO:0000176" id="R_MAR02409" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -188078,7 +188115,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02409">
+            <rdf:Description rdf:about="#R_MAR02409">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.17"/>
@@ -188089,14 +188126,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03028x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03028x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00717x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00717x" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR02410" sboTerm="SBO:0000176" id="MAR02410" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02410" sboTerm="SBO:0000176" id="R_MAR02410" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -188105,7 +188142,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02410">
+            <rdf:Description rdf:about="#R_MAR02410">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.35"/>
@@ -188117,19 +188154,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00717x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00717x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00853x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00853x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Mfe2"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02411" sboTerm="SBO:0000176" id="MAR02411" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02411" sboTerm="SBO:0000176" id="R_MAR02411" name="(4Z,7Z,10Z,13Z,16Z)-docosapentaenoyl-CoA:acetyl-CoA C-acyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -188138,7 +188175,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02411">
+            <rdf:Description rdf:about="#R_MAR02411">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.16"/>
@@ -188149,18 +188186,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00853x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00853x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00093x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01261x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00093x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="didum"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02412" sboTerm="SBO:0000185" id="MAR02412" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02412" sboTerm="SBO:0000185" id="R_MAR02412" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -188168,7 +188205,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02412">
+            <rdf:Description rdf:about="#R_MAR02412">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/DCSPTN1COAtx"/>
@@ -188178,13 +188215,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00093c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00093c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00093x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00093x" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR02415" sboTerm="SBO:0000176" id="MAR02415" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02415" sboTerm="SBO:0000176" id="R_MAR02415" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -188193,7 +188230,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02415">
+            <rdf:Description rdf:about="#R_MAR02415">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.199"/>
@@ -188205,17 +188242,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01697c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02444c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01697c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02444c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00865c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01596c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00865c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01596c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR02417" sboTerm="SBO:0000176" id="MAR02417" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02417" sboTerm="SBO:0000176" id="R_MAR02417" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -188224,7 +188261,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02417">
+            <rdf:Description rdf:about="#R_MAR02417">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.330"/>
@@ -188236,19 +188273,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00865c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00865c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00698c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00698c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="spidey"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02419" sboTerm="SBO:0000176" id="MAR02419" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02419" sboTerm="SBO:0000176" id="R_MAR02419" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -188257,7 +188294,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02419">
+            <rdf:Description rdf:about="#R_MAR02419">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.134"/>
@@ -188269,11 +188306,11 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00698c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00698c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03004c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03004c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -188283,7 +188320,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02421" sboTerm="SBO:0000176" id="MAR02421" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02421" sboTerm="SBO:0000176" id="R_MAR02421" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -188292,7 +188329,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02421">
+            <rdf:Description rdf:about="#R_MAR02421">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.1.93"/>
@@ -188304,19 +188341,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03004c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03004c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00264c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00264c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Sc2"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02423" sboTerm="SBO:0000176" id="MAR02423" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02423" sboTerm="SBO:0000176" id="R_MAR02423" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -188325,7 +188362,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02423">
+            <rdf:Description rdf:about="#R_MAR02423">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.199"/>
@@ -188337,17 +188374,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02391c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02444c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02391c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02444c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00870c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01596c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00870c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01596c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR02426" sboTerm="SBO:0000176" id="MAR02426" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02426" sboTerm="SBO:0000176" id="R_MAR02426" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -188356,7 +188393,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02426">
+            <rdf:Description rdf:about="#R_MAR02426">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.330"/>
@@ -188368,19 +188405,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00870c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00870c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00087c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00087c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="spidey"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02428" sboTerm="SBO:0000176" id="MAR02428" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02428" sboTerm="SBO:0000176" id="R_MAR02428" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -188389,7 +188426,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02428">
+            <rdf:Description rdf:about="#R_MAR02428">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.134"/>
@@ -188401,11 +188438,11 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00087c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00087c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03007c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03007c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -188415,7 +188452,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02430" sboTerm="SBO:0000176" id="MAR02430" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02430" sboTerm="SBO:0000176" id="R_MAR02430" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -188424,7 +188461,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02430">
+            <rdf:Description rdf:about="#R_MAR02430">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.1.93"/>
@@ -188436,19 +188473,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03007c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03007c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00009c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00009c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Sc2"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02433" sboTerm="SBO:0000176" id="MAR02433" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02433" sboTerm="SBO:0000176" id="R_MAR02433" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -188457,7 +188494,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02433">
+            <rdf:Description rdf:about="#R_MAR02433">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.199"/>
@@ -188469,17 +188506,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00009c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02444c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00009c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02444c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00860c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01596c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00860c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01596c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR02434" sboTerm="SBO:0000176" id="MAR02434" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02434" sboTerm="SBO:0000176" id="R_MAR02434" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -188488,7 +188525,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02434">
+            <rdf:Description rdf:about="#R_MAR02434">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.330"/>
@@ -188500,19 +188537,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00860c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00860c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00085c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00085c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="spidey"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02435" sboTerm="SBO:0000176" id="MAR02435" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02435" sboTerm="SBO:0000176" id="R_MAR02435" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -188521,7 +188558,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02435">
+            <rdf:Description rdf:about="#R_MAR02435">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.134"/>
@@ -188533,11 +188570,11 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00085c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00085c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03008c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03008c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -188547,7 +188584,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02436" sboTerm="SBO:0000176" id="MAR02436" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02436" sboTerm="SBO:0000176" id="R_MAR02436" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -188556,7 +188593,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02436">
+            <rdf:Description rdf:about="#R_MAR02436">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.1.93"/>
@@ -188568,19 +188605,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03008c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03008c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00023c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00023c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Sc2"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03444" sboTerm="SBO:0000176" id="MAR03444" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03444" sboTerm="SBO:0000176" id="R_MAR03444" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -188589,7 +188626,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03444">
+            <rdf:Description rdf:about="#R_MAR03444">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.8.7"/>
@@ -188602,12 +188639,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01364m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01802m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01364m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01802m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00682m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01803m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00682m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01803m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -188616,7 +188653,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03445" sboTerm="SBO:0000176" id="MAR03445" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03445" sboTerm="SBO:0000176" id="R_MAR03445" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -188625,7 +188662,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03445">
+            <rdf:Description rdf:about="#R_MAR03445">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/5.3.3.8"/>
@@ -188636,10 +188673,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00682m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00682m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03033m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03033m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -188648,7 +188685,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03447" sboTerm="SBO:0000176" id="MAR03447" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03447" sboTerm="SBO:0000176" id="R_MAR03447" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -188657,7 +188694,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03447">
+            <rdf:Description rdf:about="#R_MAR03447">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/5.3.3.8"/>
@@ -188669,10 +188706,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03034m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03034m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03029m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03029m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -188682,7 +188719,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03448" sboTerm="SBO:0000176" id="MAR03448" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03448" sboTerm="SBO:0000176" id="R_MAR03448" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -188690,7 +188727,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03448">
+            <rdf:Description rdf:about="#R_MAR03448">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.8.7"/>
@@ -188704,12 +188741,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01697m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01802m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01697m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01802m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01803m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03029m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01803m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03029m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -188718,7 +188755,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03449" sboTerm="SBO:0000176" id="MAR03449" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03449" sboTerm="SBO:0000176" id="R_MAR03449" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -188727,7 +188764,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03449">
+            <rdf:Description rdf:about="#R_MAR03449">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.17"/>
@@ -188738,14 +188775,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03029m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03029m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00710m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00710m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03450" sboTerm="SBO:0000176" id="MAR03450" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03450" sboTerm="SBO:0000176" id="R_MAR03450" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -188754,7 +188791,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03450">
+            <rdf:Description rdf:about="#R_MAR03450">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.35"/>
@@ -188766,16 +188803,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00710m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00710m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00859m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00859m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03452" sboTerm="SBO:0000176" id="MAR03452" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03452" sboTerm="SBO:0000176" id="R_MAR03452" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -188784,7 +188821,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03452">
+            <rdf:Description rdf:about="#R_MAR03452">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.8.7"/>
@@ -188798,12 +188835,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01802m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01934m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01802m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01934m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00073m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01803m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00073m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01803m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -188812,7 +188849,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03453" sboTerm="SBO:0000176" id="MAR03453" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03453" sboTerm="SBO:0000176" id="R_MAR03453" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -188821,7 +188858,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03453">
+            <rdf:Description rdf:about="#R_MAR03453">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.17"/>
@@ -188832,14 +188869,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00073m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00073m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00697m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00697m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03454" sboTerm="SBO:0000176" id="MAR03454" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03454" sboTerm="SBO:0000176" id="R_MAR03454" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -188848,7 +188885,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03454">
+            <rdf:Description rdf:about="#R_MAR03454">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.35"/>
@@ -188860,16 +188897,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00697m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00697m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00834m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00834m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03455" sboTerm="SBO:0000176" id="MAR03455" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03455" sboTerm="SBO:0000176" id="R_MAR03455" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -188878,7 +188915,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03455">
+            <rdf:Description rdf:about="#R_MAR03455">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.16"/>
@@ -188890,15 +188927,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00091m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01261m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00091m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00834m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00834m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03456" sboTerm="SBO:0000176" id="MAR03456" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03456" sboTerm="SBO:0000176" id="R_MAR03456" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -188907,7 +188944,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03456">
+            <rdf:Description rdf:about="#R_MAR03456">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.8.7"/>
@@ -188921,12 +188958,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00091m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00091m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00072m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02041m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00072m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -188935,7 +188972,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03458" sboTerm="SBO:0000176" id="MAR03458" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03458" sboTerm="SBO:0000176" id="R_MAR03458" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -188944,7 +188981,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03458">
+            <rdf:Description rdf:about="#R_MAR03458">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/5.3.3.8"/>
@@ -188955,10 +188992,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00089m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00089m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03009m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03009m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -188967,7 +189004,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03459" sboTerm="SBO:0000176" id="MAR03459" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03459" sboTerm="SBO:0000176" id="R_MAR03459" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -188976,7 +189013,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03459">
+            <rdf:Description rdf:about="#R_MAR03459">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.3.6"/>
@@ -188987,12 +189024,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01364x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01364x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00682x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02041x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00682x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -189001,7 +189038,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03460" sboTerm="SBO:0000176" id="MAR03460" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03460" sboTerm="SBO:0000176" id="R_MAR03460" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -189010,7 +189047,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03460">
+            <rdf:Description rdf:about="#R_MAR03460">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/5.3.3.8"/>
@@ -189021,13 +189058,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00682x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00682x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03033x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03033x" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03462" sboTerm="SBO:0000176" id="MAR03462" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03462" sboTerm="SBO:0000176" id="R_MAR03462" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -189036,7 +189073,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03462">
+            <rdf:Description rdf:about="#R_MAR03462">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/5.3.3.8"/>
@@ -189047,13 +189084,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03034x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03034x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03029x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03029x" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03463" sboTerm="SBO:0000176" id="MAR03463" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03463" sboTerm="SBO:0000176" id="R_MAR03463" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -189062,7 +189099,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03463">
+            <rdf:Description rdf:about="#R_MAR03463">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.17"/>
@@ -189073,14 +189110,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03029x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03029x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00710x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00710x" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03464" sboTerm="SBO:0000176" id="MAR03464" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03464" sboTerm="SBO:0000176" id="R_MAR03464" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -189089,7 +189126,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03464">
+            <rdf:Description rdf:about="#R_MAR03464">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.35"/>
@@ -189101,19 +189138,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00710x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00710x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00859x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00859x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Mfe2"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03466" sboTerm="SBO:0000176" id="MAR03466" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03466" sboTerm="SBO:0000176" id="R_MAR03466" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -189122,7 +189159,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03466">
+            <rdf:Description rdf:about="#R_MAR03466">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.3.6"/>
@@ -189133,12 +189170,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01934x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01934x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00073x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02041x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00073x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -189147,7 +189184,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03467" sboTerm="SBO:0000176" id="MAR03467" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03467" sboTerm="SBO:0000176" id="R_MAR03467" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -189156,7 +189193,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03467">
+            <rdf:Description rdf:about="#R_MAR03467">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.17"/>
@@ -189167,14 +189204,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00073x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00073x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00697x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00697x" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03468" sboTerm="SBO:0000176" id="MAR03468" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03468" sboTerm="SBO:0000176" id="R_MAR03468" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -189183,7 +189220,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03468">
+            <rdf:Description rdf:about="#R_MAR03468">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.35"/>
@@ -189195,19 +189232,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00697x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00697x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00834x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00834x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Mfe2"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03469" sboTerm="SBO:0000176" id="MAR03469" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03469" sboTerm="SBO:0000176" id="R_MAR03469" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -189216,7 +189253,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03469">
+            <rdf:Description rdf:about="#R_MAR03469">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.16"/>
@@ -189227,18 +189264,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00091x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01261x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00091x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00834x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00834x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="didum"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03470" sboTerm="SBO:0000176" id="MAR03470" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03470" sboTerm="SBO:0000176" id="R_MAR03470" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -189247,7 +189284,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03470">
+            <rdf:Description rdf:about="#R_MAR03470">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.3.6"/>
@@ -189258,12 +189295,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00091x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00091x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00072x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02041x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00072x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -189272,7 +189309,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03472" sboTerm="SBO:0000176" id="MAR03472" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03472" sboTerm="SBO:0000176" id="R_MAR03472" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -189281,7 +189318,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03472">
+            <rdf:Description rdf:about="#R_MAR03472">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/5.3.3.8"/>
@@ -189292,13 +189329,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00089x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00089x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03009x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03009x" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR00931" sboTerm="SBO:0000176" id="MAR00931" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00931" sboTerm="SBO:0000176" id="R_MAR00931" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -189306,7 +189343,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00931">
+            <rdf:Description rdf:about="#R_MAR00931">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.14.1"/>
@@ -189317,15 +189354,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01362c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01362c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01190c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01190c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -189335,7 +189372,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00932" sboTerm="SBO:0000176" id="MAR00932" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00932" sboTerm="SBO:0000176" id="R_MAR00932" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -189343,7 +189380,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00932">
+            <rdf:Description rdf:about="#R_MAR00932">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.14.1"/>
@@ -189354,15 +189391,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01362c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01362c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01213c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01213c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -189372,7 +189409,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00933" sboTerm="SBO:0000176" id="MAR00933" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00933" sboTerm="SBO:0000176" id="R_MAR00933" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -189380,7 +189417,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00933">
+            <rdf:Description rdf:about="#R_MAR00933">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.14.1"/>
@@ -189391,15 +189428,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01362c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01362c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01239c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01239c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -189409,7 +189446,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00934" sboTerm="SBO:0000176" id="MAR00934" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00934" sboTerm="SBO:0000176" id="R_MAR00934" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -189417,7 +189454,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00934">
+            <rdf:Description rdf:about="#R_MAR00934">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.14.1"/>
@@ -189427,15 +189464,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01362c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01362c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00270c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00270c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -189445,7 +189482,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00935" sboTerm="SBO:0000176" id="MAR00935" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00935" sboTerm="SBO:0000176" id="R_MAR00935" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -189453,7 +189490,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00935">
+            <rdf:Description rdf:about="#R_MAR00935">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.14.1"/>
@@ -189464,15 +189501,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01362c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01362c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00297c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00297c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -189482,7 +189519,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00936" sboTerm="SBO:0000176" id="MAR00936" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00936" sboTerm="SBO:0000176" id="R_MAR00936" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -189490,7 +189527,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00936">
+            <rdf:Description rdf:about="#R_MAR00936">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.14.1"/>
@@ -189501,15 +189538,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01362c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01362c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00354c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00354c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -189519,7 +189556,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00937" sboTerm="SBO:0000176" id="MAR00937" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00937" sboTerm="SBO:0000176" id="R_MAR00937" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -189527,7 +189564,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00937">
+            <rdf:Description rdf:about="#R_MAR00937">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.14.1"/>
@@ -189540,15 +189577,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01362c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01362c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00396c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00396c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -189558,7 +189595,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00938" sboTerm="SBO:0000176" id="MAR00938" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00938" sboTerm="SBO:0000176" id="R_MAR00938" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -189566,7 +189603,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00938">
+            <rdf:Description rdf:about="#R_MAR00938">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.14.1"/>
@@ -189577,15 +189614,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01362c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01362c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00414c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00414c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -189595,7 +189632,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00939" sboTerm="SBO:0000176" id="MAR00939" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00939" sboTerm="SBO:0000176" id="R_MAR00939" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -189603,7 +189640,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00939">
+            <rdf:Description rdf:about="#R_MAR00939">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.14.1"/>
@@ -189614,15 +189651,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01362c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01362c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00426c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00426c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -189632,7 +189669,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00940" sboTerm="SBO:0000176" id="MAR00940" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00940" sboTerm="SBO:0000176" id="R_MAR00940" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -189640,7 +189677,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00940">
+            <rdf:Description rdf:about="#R_MAR00940">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.14.1"/>
@@ -189653,15 +189690,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01362c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01362c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00430c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00430c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -189671,7 +189708,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00942" sboTerm="SBO:0000176" id="MAR00942" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00942" sboTerm="SBO:0000176" id="R_MAR00942" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -189679,7 +189716,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00942">
+            <rdf:Description rdf:about="#R_MAR00942">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.14.1"/>
@@ -189692,15 +189729,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01362c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01362c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01054c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01054c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -189710,7 +189747,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00943" sboTerm="SBO:0000176" id="MAR00943" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00943" sboTerm="SBO:0000176" id="R_MAR00943" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -189719,7 +189756,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00943">
+            <rdf:Description rdf:about="#R_MAR00943">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.14.1"/>
@@ -189731,14 +189768,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01362c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01803c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01362c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01803c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01054c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01802c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01054c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01802c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -189748,7 +189785,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00944" sboTerm="SBO:0000176" id="MAR00944" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00944" sboTerm="SBO:0000176" id="R_MAR00944" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -189757,7 +189794,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00944">
+            <rdf:Description rdf:about="#R_MAR00944">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.14.1"/>
@@ -189769,14 +189806,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01362r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01803r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01362r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01803r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01054r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01802r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01054r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01802r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -189786,7 +189823,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00945" sboTerm="SBO:0000176" id="MAR00945" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00945" sboTerm="SBO:0000176" id="R_MAR00945" name="5,6-EET hydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -189794,7 +189831,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00945">
+            <rdf:Description rdf:about="#R_MAR00945">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.3.2.9"/>
@@ -189808,11 +189845,11 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01054c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01054c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01051c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01051c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -189822,7 +189859,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00946" sboTerm="SBO:0000176" id="MAR00946" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00946" sboTerm="SBO:0000176" id="R_MAR00946" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -189830,7 +189867,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00946">
+            <rdf:Description rdf:about="#R_MAR00946">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.14.1"/>
@@ -189843,15 +189880,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01362c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01362c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01209c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01209c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -189861,7 +189898,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00947" sboTerm="SBO:0000176" id="MAR00947" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00947" sboTerm="SBO:0000176" id="R_MAR00947" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -189870,7 +189907,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00947">
+            <rdf:Description rdf:about="#R_MAR00947">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.14.1"/>
@@ -189882,14 +189919,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01362c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01803c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01362c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01803c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01209c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01802c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01209c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01802c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -189899,7 +189936,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00948" sboTerm="SBO:0000176" id="MAR00948" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00948" sboTerm="SBO:0000176" id="R_MAR00948" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -189908,7 +189945,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00948">
+            <rdf:Description rdf:about="#R_MAR00948">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.14.1"/>
@@ -189920,14 +189957,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01362r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01803r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01362r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01803r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01209r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01802r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01209r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01802r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -189937,7 +189974,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00949" sboTerm="SBO:0000176" id="MAR00949" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00949" sboTerm="SBO:0000176" id="R_MAR00949" name="8,9-EET hydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -189945,7 +189982,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00949">
+            <rdf:Description rdf:about="#R_MAR00949">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.3.2.9"/>
@@ -189959,11 +189996,11 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01209c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01209c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01208c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01208c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -189973,7 +190010,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00950" sboTerm="SBO:0000176" id="MAR00950" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00950" sboTerm="SBO:0000176" id="R_MAR00950" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -189981,7 +190018,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00950">
+            <rdf:Description rdf:about="#R_MAR00950">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.14.1"/>
@@ -189994,15 +190031,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01362c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01362c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00279c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00279c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -190012,7 +190049,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00951" sboTerm="SBO:0000176" id="MAR00951" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00951" sboTerm="SBO:0000176" id="R_MAR00951" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -190021,7 +190058,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00951">
+            <rdf:Description rdf:about="#R_MAR00951">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.14.1"/>
@@ -190033,14 +190070,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01362c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01803c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01362c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01803c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00279c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01802c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00279c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01802c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -190050,7 +190087,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00953" sboTerm="SBO:0000176" id="MAR00953" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00953" sboTerm="SBO:0000176" id="R_MAR00953" name="11,12-EET hydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -190058,7 +190095,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00953">
+            <rdf:Description rdf:about="#R_MAR00953">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.3.2.9"/>
@@ -190072,11 +190109,11 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00279c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00279c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00277c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00277c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -190086,7 +190123,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00954" sboTerm="SBO:0000176" id="MAR00954" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00954" sboTerm="SBO:0000176" id="R_MAR00954" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -190094,7 +190131,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00954">
+            <rdf:Description rdf:about="#R_MAR00954">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.14.1"/>
@@ -190107,15 +190144,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01362c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01362c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00366c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00366c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -190125,7 +190162,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00955" sboTerm="SBO:0000176" id="MAR00955" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00955" sboTerm="SBO:0000176" id="R_MAR00955" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -190134,7 +190171,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00955">
+            <rdf:Description rdf:about="#R_MAR00955">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.14.1"/>
@@ -190146,14 +190183,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01362c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01803c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01362c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01803c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00366c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01802c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00366c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01802c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -190163,7 +190200,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00956" sboTerm="SBO:0000176" id="MAR00956" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00956" sboTerm="SBO:0000176" id="R_MAR00956" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -190172,7 +190209,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00956">
+            <rdf:Description rdf:about="#R_MAR00956">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.14.1"/>
@@ -190184,14 +190221,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01362r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01803r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01362r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01803r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00366r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01802r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00366r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01802r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -190201,7 +190238,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00957" sboTerm="SBO:0000176" id="MAR00957" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00957" sboTerm="SBO:0000176" id="R_MAR00957" name="14,15-EET hydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -190209,7 +190246,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00957">
+            <rdf:Description rdf:about="#R_MAR00957">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.3.2.9"/>
@@ -190223,11 +190260,11 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00366c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00366c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00364c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00364c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -190237,7 +190274,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00960" sboTerm="SBO:0000176" id="MAR00960" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00960" sboTerm="SBO:0000176" id="R_MAR00960" name="Glutathione: 5-HPETE oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -190245,7 +190282,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00960">
+            <rdf:Description rdf:about="#R_MAR00960">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.11.1.9"/>
@@ -190258,13 +190295,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01042c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02026c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01042c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026c" stoichiometry="2" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02027c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02027c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -190273,7 +190310,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00963" sboTerm="SBO:0000176" id="MAR00963" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00963" sboTerm="SBO:0000176" id="R_MAR00963" name="Glutathione: 5-HPETE oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -190281,7 +190318,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00963">
+            <rdf:Description rdf:about="#R_MAR00963">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.11.1.9"/>
@@ -190294,13 +190331,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01042m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02026m" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01042m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026m" stoichiometry="2" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02027m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02027m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -190309,7 +190346,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00973" sboTerm="SBO:0000176" id="MAR00973" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00973" sboTerm="SBO:0000176" id="R_MAR00973" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -190318,7 +190355,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00973">
+            <rdf:Description rdf:about="#R_MAR00973">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.184"/>
@@ -190330,19 +190367,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01126c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01126c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Dhrs4"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00979" sboTerm="SBO:0000176" id="MAR00979" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00979" sboTerm="SBO:0000176" id="R_MAR00979" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -190351,7 +190388,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00979">
+            <rdf:Description rdf:about="#R_MAR00979">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR103915"/>
@@ -190363,13 +190400,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01123c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01123c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01124c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01124c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR00980" sboTerm="SBO:0000176" id="MAR00980" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00980" sboTerm="SBO:0000176" id="R_MAR00980" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -190378,7 +190415,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00980">
+            <rdf:Description rdf:about="#R_MAR00980">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.184"/>
@@ -190390,19 +190427,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01048c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01048c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01123c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01123c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Dhrs4"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00988" sboTerm="SBO:0000176" id="MAR00988" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00988" sboTerm="SBO:0000176" id="R_MAR00988" name="Glutathione: 15-HPETE oxidoreductase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -190410,7 +190447,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00988">
+            <rdf:Description rdf:about="#R_MAR00988">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.11.1.9"/>
@@ -190423,13 +190460,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00377c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02027c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00377c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02027c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00380c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02026c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM00380c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026c" stoichiometry="2" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -190438,7 +190475,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00989" sboTerm="SBO:0000176" id="MAR00989" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00989" sboTerm="SBO:0000176" id="R_MAR00989" name="(15S)-15-Hydroxy-5,8,11-cis-13-trans-icosatetraenoate:NADP+ 15-oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -190446,7 +190483,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00989">
+            <rdf:Description rdf:about="#R_MAR00989">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.232"/>
@@ -190459,16 +190496,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00377c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00377c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00393c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00393c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR00990" sboTerm="SBO:0000176" id="MAR00990" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00990" sboTerm="SBO:0000176" id="R_MAR00990" name="(15S)-15-Hydroxy-5,8,11-cis-13-trans-icosatetraenoate:NAD+ 15-oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -190476,7 +190513,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00990">
+            <rdf:Description rdf:about="#R_MAR00990">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.232"/>
@@ -190489,16 +190526,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00377c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00377c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00393c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00393c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR00991" sboTerm="SBO:0000176" id="MAR00991" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00991" sboTerm="SBO:0000176" id="R_MAR00991" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -190506,7 +190543,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00991">
+            <rdf:Description rdf:about="#R_MAR00991">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.14.1"/>
@@ -190519,10 +190556,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00380c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00380c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00390c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00390c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -190532,7 +190569,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00992" sboTerm="SBO:0000176" id="MAR00992" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00992" sboTerm="SBO:0000176" id="R_MAR00992" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -190540,7 +190577,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00992">
+            <rdf:Description rdf:about="#R_MAR00992">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.14.1"/>
@@ -190553,11 +190590,11 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00276c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00276c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00390c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00390c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -190567,7 +190604,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00993" sboTerm="SBO:0000176" id="MAR00993" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00993" sboTerm="SBO:0000176" id="R_MAR00993" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -190575,7 +190612,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00993">
+            <rdf:Description rdf:about="#R_MAR00993">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.14.1"/>
@@ -190588,10 +190625,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00296c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00296c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00380c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00380c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -190601,7 +190638,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00994" sboTerm="SBO:0000176" id="MAR00994" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00994" sboTerm="SBO:0000176" id="R_MAR00994" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -190609,7 +190646,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00994">
+            <rdf:Description rdf:about="#R_MAR00994">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.14.1"/>
@@ -190622,11 +190659,11 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00280c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00280c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00296c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00296c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -190636,7 +190673,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01002" sboTerm="SBO:0000176" id="MAR01002" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01002" sboTerm="SBO:0000176" id="R_MAR01002" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -190645,7 +190682,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01002">
+            <rdf:Description rdf:about="#R_MAR01002">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.3.2.9"/>
@@ -190658,11 +190695,11 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00098c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00098c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00386c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00386c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -190672,7 +190709,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01003" sboTerm="SBO:0000176" id="MAR01003" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01003" sboTerm="SBO:0000176" id="R_MAR01003" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -190681,7 +190718,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01003">
+            <rdf:Description rdf:about="#R_MAR01003">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.3.2.9"/>
@@ -190694,11 +190731,11 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00098x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00098x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00386x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00386x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -190708,7 +190745,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01004" sboTerm="SBO:0000176" id="MAR01004" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01004" sboTerm="SBO:0000176" id="R_MAR01004" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -190717,7 +190754,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01004">
+            <rdf:Description rdf:about="#R_MAR01004">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.3.2.9"/>
@@ -190730,11 +190767,11 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00098r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00098r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00386r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00386r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -190744,7 +190781,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01006" sboTerm="SBO:0000176" id="MAR01006" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01006" sboTerm="SBO:0000176" id="R_MAR01006" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -190753,7 +190790,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01006">
+            <rdf:Description rdf:about="#R_MAR01006">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.3.2.9"/>
@@ -190766,11 +190803,11 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00098c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00098c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00388c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00388c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -190780,7 +190817,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01007" sboTerm="SBO:0000176" id="MAR01007" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01007" sboTerm="SBO:0000176" id="R_MAR01007" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -190789,7 +190826,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01007">
+            <rdf:Description rdf:about="#R_MAR01007">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.3.2.9"/>
@@ -190802,11 +190839,11 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00098x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00098x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00388x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00388x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -190816,7 +190853,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01008" sboTerm="SBO:0000176" id="MAR01008" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01008" sboTerm="SBO:0000176" id="R_MAR01008" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -190825,7 +190862,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01008">
+            <rdf:Description rdf:about="#R_MAR01008">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.3.2.9"/>
@@ -190838,11 +190875,11 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00098r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00098r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00388r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00388r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -190852,7 +190889,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01020" sboTerm="SBO:0000176" id="MAR01020" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01020" sboTerm="SBO:0000176" id="R_MAR01020" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -190861,7 +190898,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01020">
+            <rdf:Description rdf:about="#R_MAR01020">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.3.2.9"/>
@@ -190876,11 +190913,11 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01058c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01058c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02396c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02396c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -190890,7 +190927,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01021" sboTerm="SBO:0000176" id="MAR01021" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01021" sboTerm="SBO:0000176" id="R_MAR01021" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -190899,7 +190936,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01021">
+            <rdf:Description rdf:about="#R_MAR01021">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.3.2.9"/>
@@ -190914,11 +190951,11 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01058n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01058n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040n" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02396n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02396n" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -190928,7 +190965,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01022" sboTerm="SBO:0000176" id="MAR01022" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01022" sboTerm="SBO:0000176" id="R_MAR01022" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -190937,7 +190974,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01022">
+            <rdf:Description rdf:about="#R_MAR01022">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.3.2.9"/>
@@ -190952,11 +190989,11 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01058r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01058r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02396r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02396r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -190966,7 +191003,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01023" sboTerm="SBO:0000176" id="MAR01023" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01023" sboTerm="SBO:0000176" id="R_MAR01023" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -190975,7 +191012,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01023">
+            <rdf:Description rdf:about="#R_MAR01023">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.3.2.9"/>
@@ -190990,11 +191027,11 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01058x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01058x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02396x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02396x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -191004,7 +191041,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01025" sboTerm="SBO:0000176" id="MAR01025" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01025" sboTerm="SBO:0000176" id="R_MAR01025" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -191013,7 +191050,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01025">
+            <rdf:Description rdf:about="#R_MAR01025">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.3.2.9"/>
@@ -191028,11 +191065,11 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01058c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01058c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02395c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02395c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -191042,7 +191079,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01026" sboTerm="SBO:0000176" id="MAR01026" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01026" sboTerm="SBO:0000176" id="R_MAR01026" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -191051,7 +191088,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01026">
+            <rdf:Description rdf:about="#R_MAR01026">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.3.2.9"/>
@@ -191065,11 +191102,11 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01058n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01058n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040n" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02395n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02395n" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -191079,7 +191116,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01027" sboTerm="SBO:0000176" id="MAR01027" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01027" sboTerm="SBO:0000176" id="R_MAR01027" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -191088,7 +191125,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01027">
+            <rdf:Description rdf:about="#R_MAR01027">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.3.2.9"/>
@@ -191103,11 +191140,11 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01058r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01058r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02395r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02395r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -191117,7 +191154,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01028" sboTerm="SBO:0000176" id="MAR01028" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01028" sboTerm="SBO:0000176" id="R_MAR01028" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -191126,7 +191163,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01028">
+            <rdf:Description rdf:about="#R_MAR01028">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.3.2.9"/>
@@ -191141,11 +191178,11 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01058x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01058x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02395x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02395x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -191155,7 +191192,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01040" sboTerm="SBO:0000176" id="MAR01040" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01040" sboTerm="SBO:0000176" id="R_MAR01040" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -191163,7 +191200,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01040">
+            <rdf:Description rdf:about="#R_MAR01040">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_1040"/>
@@ -191173,16 +191210,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00307c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00307c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00334c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00334c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01041" sboTerm="SBO:0000176" id="MAR01041" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01041" sboTerm="SBO:0000176" id="R_MAR01041" name="12-HPETE hydroxymutase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -191190,7 +191227,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01041">
+            <rdf:Description rdf:about="#R_MAR01041">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/5.4.4.-"/>
@@ -191203,13 +191240,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00309c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00309c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02098c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02098c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01042" sboTerm="SBO:0000176" id="MAR01042" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01042" sboTerm="SBO:0000176" id="R_MAR01042" name="Hepoxilin B3 hydrolase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -191217,7 +191254,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01042">
+            <rdf:Description rdf:about="#R_MAR01042">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R07037"/>
@@ -191229,14 +191266,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02098c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02098c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03056c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03056c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01043" sboTerm="SBO:0000176" id="MAR01043" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01043" sboTerm="SBO:0000176" id="R_MAR01043" name="12-HPETE hydroxymutase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -191245,7 +191282,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01043">
+            <rdf:Description rdf:about="#R_MAR01043">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.11.1.9"/>
@@ -191259,10 +191296,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00309c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00309c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02096c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02096c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -191271,7 +191308,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01045" sboTerm="SBO:0000176" id="MAR01045" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01045" sboTerm="SBO:0000176" id="R_MAR01045" name="12-HPETE hydroxymutase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -191280,7 +191317,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01045">
+            <rdf:Description rdf:about="#R_MAR01045">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.11.1.9"/>
@@ -191293,10 +191330,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00309e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00309e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02096e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02096e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -191305,7 +191342,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01048" sboTerm="SBO:0000176" id="MAR01048" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01048" sboTerm="SBO:0000176" id="R_MAR01048" name="12-HPETE hydroxymutase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -191314,7 +191351,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01048">
+            <rdf:Description rdf:about="#R_MAR01048">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.11.1.9"/>
@@ -191327,10 +191364,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00309x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00309x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02096x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02096x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -191339,7 +191376,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01049" sboTerm="SBO:0000176" id="MAR01049" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01049" sboTerm="SBO:0000176" id="R_MAR01049" name="12-HPETE hydroxymutase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -191348,7 +191385,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01049">
+            <rdf:Description rdf:about="#R_MAR01049">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.11.1.9"/>
@@ -191361,10 +191398,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00309r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00309r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02096r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02096r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -191373,7 +191410,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01050" sboTerm="SBO:0000176" id="MAR01050" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01050" sboTerm="SBO:0000176" id="R_MAR01050" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -191382,7 +191419,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01050">
+            <rdf:Description rdf:about="#R_MAR01050">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.5.1.18"/>
@@ -191394,11 +191431,11 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02026c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02096c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02096c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02097c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02097c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -191414,7 +191451,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01053" sboTerm="SBO:0000176" id="MAR01053" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01053" sboTerm="SBO:0000176" id="R_MAR01053" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -191423,7 +191460,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01053">
+            <rdf:Description rdf:about="#R_MAR01053">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.5.1.18"/>
@@ -191435,11 +191472,11 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02026r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02096r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02096r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02097r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02097r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -191455,7 +191492,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01054" sboTerm="SBO:0000176" id="MAR01054" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01054" sboTerm="SBO:0000176" id="R_MAR01054" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -191464,7 +191501,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01054">
+            <rdf:Description rdf:about="#R_MAR01054">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.5.1.18"/>
@@ -191476,11 +191513,11 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02026x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02096x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02096x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02097x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02097x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -191496,7 +191533,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01055" sboTerm="SBO:0000176" id="MAR01055" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01055" sboTerm="SBO:0000176" id="R_MAR01055" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -191505,7 +191542,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01055">
+            <rdf:Description rdf:about="#R_MAR01055">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.3.2.9"/>
@@ -191518,11 +191555,11 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02096c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02096c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03055c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03055c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -191532,7 +191569,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01057" sboTerm="SBO:0000176" id="MAR01057" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01057" sboTerm="SBO:0000176" id="R_MAR01057" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -191541,7 +191578,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01057">
+            <rdf:Description rdf:about="#R_MAR01057">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.3.2.9"/>
@@ -191554,11 +191591,11 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02096r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02096r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03055r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03055r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -191568,7 +191605,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01058" sboTerm="SBO:0000176" id="MAR01058" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01058" sboTerm="SBO:0000176" id="R_MAR01058" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -191577,7 +191614,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01058">
+            <rdf:Description rdf:about="#R_MAR01058">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.3.2.9"/>
@@ -191590,11 +191627,11 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02096x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02096x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03055x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03055x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -191604,7 +191641,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01065" sboTerm="SBO:0000176" id="MAR01065" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01065" sboTerm="SBO:0000176" id="R_MAR01065" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -191612,7 +191649,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01065">
+            <rdf:Description rdf:about="#R_MAR01065">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.35"/>
@@ -191630,23 +191667,23 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00279c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02552c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00279c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02552c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01219c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01261c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01334c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02041c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01219c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01066" sboTerm="SBO:0000176" id="MAR01066" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01066" sboTerm="SBO:0000176" id="R_MAR01066" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -191654,7 +191691,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01066">
+            <rdf:Description rdf:about="#R_MAR01066">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.35"/>
@@ -191672,24 +191709,24 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01219c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02552c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01219c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02552c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01176c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01261c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01334c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02041c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01176c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02041c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01067" sboTerm="SBO:0000176" id="MAR01067" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01067" sboTerm="SBO:0000176" id="R_MAR01067" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -191697,7 +191734,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01067">
+            <rdf:Description rdf:about="#R_MAR01067">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.35"/>
@@ -191715,23 +191752,23 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01176c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02552c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01176c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02552c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01055c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01261c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01334c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02041c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01055c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01068" sboTerm="SBO:0000176" id="MAR01068" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01068" sboTerm="SBO:0000176" id="R_MAR01068" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -191739,7 +191776,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01068">
+            <rdf:Description rdf:about="#R_MAR01068">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.35"/>
@@ -191757,23 +191794,23 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00366c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02552c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00366c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02552c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00310c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01261c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01334c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02041c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00310c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01069" sboTerm="SBO:0000176" id="MAR01069" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01069" sboTerm="SBO:0000176" id="R_MAR01069" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -191781,7 +191818,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01069">
+            <rdf:Description rdf:about="#R_MAR01069">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.35"/>
@@ -191799,24 +191836,24 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00310c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02552c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00310c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02552c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00259c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01261c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01334c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02041c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00259c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02041c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01070" sboTerm="SBO:0000176" id="MAR01070" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01070" sboTerm="SBO:0000176" id="R_MAR01070" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -191824,7 +191861,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01070">
+            <rdf:Description rdf:about="#R_MAR01070">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.35"/>
@@ -191842,24 +191879,24 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00259c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02552c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00259c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02552c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01210c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01261c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01334c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02041c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01210c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01074" sboTerm="SBO:0000176" id="MAR01074" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01074" sboTerm="SBO:0000176" id="R_MAR01074" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -191867,7 +191904,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01074">
+            <rdf:Description rdf:about="#R_MAR01074">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.1.-"/>
@@ -191878,13 +191915,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00307c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00307c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00321c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00321c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -191893,7 +191930,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01079" sboTerm="SBO:0000176" id="MAR01079" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01079" sboTerm="SBO:0000176" id="R_MAR01079" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -191901,7 +191938,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01079">
+            <rdf:Description rdf:about="#R_MAR01079">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.5.1.99"/>
@@ -191912,13 +191949,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01362c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01983c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="5" constant="true"/>
+          <speciesReference species="M_MAM01362c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01983c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="5" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02610c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02610c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -191927,7 +191964,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03015" sboTerm="SBO:0000176" id="MAR03015" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03015" sboTerm="SBO:0000176" id="R_MAR03015" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -191936,7 +191973,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03015">
+            <rdf:Description rdf:about="#R_MAR03015">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.2.2"/>
@@ -191951,13 +191988,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01364x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01364x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01362x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01362x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -191967,7 +192004,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01080" sboTerm="SBO:0000176" id="MAR01080" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01080" sboTerm="SBO:0000176" id="R_MAR01080" name="(7E,9E,11Z,14Z)-(5S,6S)-5,6-Epoxyicosa-7,9,11,14-tetraenoate hydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -191976,7 +192013,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01080">
+            <rdf:Description rdf:about="#R_MAR01080">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.3.2.6"/>
@@ -191993,17 +192030,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02362c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02362c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02364c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02364c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG10602"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01084" sboTerm="SBO:0000176" id="MAR01084" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01084" sboTerm="SBO:0000176" id="R_MAR01084" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -192012,7 +192049,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01084">
+            <rdf:Description rdf:about="#R_MAR01084">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.2.2"/>
@@ -192025,15 +192062,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02366e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02366e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01111e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02418e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01111e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02418e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01085" sboTerm="SBO:0000176" id="MAR01085" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01085" sboTerm="SBO:0000176" id="R_MAR01085" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -192042,7 +192079,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01085">
+            <rdf:Description rdf:about="#R_MAR01085">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.4.13.19"/>
@@ -192056,18 +192093,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02418e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02418e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01986e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02369e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02369e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG6154"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01087" sboTerm="SBO:0000176" id="MAR01087" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01087" sboTerm="SBO:0000176" id="R_MAR01087" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -192075,7 +192112,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01087">
+            <rdf:Description rdf:about="#R_MAR01087">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_1087"/>
@@ -192085,14 +192122,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02369c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02369c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00304c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00304c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01088" sboTerm="SBO:0000176" id="MAR01088" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01088" sboTerm="SBO:0000176" id="R_MAR01088" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -192101,7 +192138,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01088">
+            <rdf:Description rdf:about="#R_MAR01088">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.-"/>
@@ -192113,13 +192150,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02538c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02538c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02369c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02369c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -192163,7 +192200,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01091" sboTerm="SBO:0000176" id="MAR01091" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01091" sboTerm="SBO:0000176" id="R_MAR01091" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -192172,7 +192209,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01091">
+            <rdf:Description rdf:about="#R_MAR01091">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.-"/>
@@ -192184,13 +192221,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02538n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02538n" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02369n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02369n" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -192234,7 +192271,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01092" sboTerm="SBO:0000176" id="MAR01092" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01092" sboTerm="SBO:0000176" id="R_MAR01092" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -192242,7 +192279,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01092">
+            <rdf:Description rdf:about="#R_MAR01092">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_1092"/>
@@ -192252,14 +192289,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02362c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02362c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00320c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00320c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01097" sboTerm="SBO:0000176" id="MAR01097" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01097" sboTerm="SBO:0000176" id="R_MAR01097" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -192267,7 +192304,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01097">
+            <rdf:Description rdf:about="#R_MAR01097">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.141"/>
@@ -192278,13 +192315,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00394c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00394c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02395c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02395c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -192293,7 +192330,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01098" sboTerm="SBO:0000176" id="MAR01098" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01098" sboTerm="SBO:0000176" id="R_MAR01098" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -192302,7 +192339,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01098">
+            <rdf:Description rdf:about="#R_MAR01098">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.-"/>
@@ -192314,13 +192351,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00339c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00339c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00394c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00394c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -192345,7 +192382,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01099" sboTerm="SBO:0000176" id="MAR01099" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01099" sboTerm="SBO:0000176" id="R_MAR01099" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -192353,7 +192390,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01099">
+            <rdf:Description rdf:about="#R_MAR01099">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.141"/>
@@ -192364,13 +192401,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00339c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00339c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00340c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00340c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -192379,7 +192416,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01100" sboTerm="SBO:0000176" id="MAR01100" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01100" sboTerm="SBO:0000176" id="R_MAR01100" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -192388,7 +192425,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01100">
+            <rdf:Description rdf:about="#R_MAR01100">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.184"/>
@@ -192402,19 +192439,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02364c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02364c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00326c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00326c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Dhrs4"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01101" sboTerm="SBO:0000176" id="MAR01101" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01101" sboTerm="SBO:0000176" id="R_MAR01101" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -192423,7 +192460,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01101">
+            <rdf:Description rdf:about="#R_MAR01101">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.184"/>
@@ -192437,19 +192474,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02364m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02364m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00326m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00326m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Dhrs4"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01102" sboTerm="SBO:0000176" id="MAR01102" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01102" sboTerm="SBO:0000176" id="R_MAR01102" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -192458,7 +192495,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01102">
+            <rdf:Description rdf:about="#R_MAR01102">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.184"/>
@@ -192472,19 +192509,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02364m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02364m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00326m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00326m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Dhrs4"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01103" sboTerm="SBO:0000176" id="MAR01103" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01103" sboTerm="SBO:0000176" id="R_MAR01103" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -192493,7 +192530,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01103">
+            <rdf:Description rdf:about="#R_MAR01103">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.184"/>
@@ -192507,19 +192544,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02364r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02364r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00326r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00326r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Dhrs4"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01105" sboTerm="SBO:0000176" id="MAR01105" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01105" sboTerm="SBO:0000176" id="R_MAR01105" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -192528,7 +192565,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01105">
+            <rdf:Description rdf:about="#R_MAR01105">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.184"/>
@@ -192541,19 +192578,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02364x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02364x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00326x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00326x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Dhrs4"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01106" sboTerm="SBO:0000176" id="MAR01106" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01106" sboTerm="SBO:0000176" id="R_MAR01106" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -192562,7 +192599,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01106">
+            <rdf:Description rdf:about="#R_MAR01106">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.184"/>
@@ -192576,19 +192613,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02364x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02364x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00326x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00326x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Dhrs4"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01113" sboTerm="SBO:0000176" id="MAR01113" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01113" sboTerm="SBO:0000176" id="R_MAR01113" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -192597,7 +192634,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01113">
+            <rdf:Description rdf:about="#R_MAR01113">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR103775"/>
@@ -192608,14 +192645,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00319c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00319c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00330c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00330c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01114" sboTerm="SBO:0000176" id="MAR01114" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01114" sboTerm="SBO:0000176" id="R_MAR01114" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -192624,7 +192661,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01114">
+            <rdf:Description rdf:about="#R_MAR01114">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR103776"/>
@@ -192635,15 +192672,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00329c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00329c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00332c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00332c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01115" sboTerm="SBO:0000176" id="MAR01115" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01115" sboTerm="SBO:0000176" id="R_MAR01115" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -192652,7 +192689,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01115">
+            <rdf:Description rdf:about="#R_MAR01115">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_1115"/>
@@ -192662,15 +192699,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00329r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00329r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00332r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00332r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01116" sboTerm="SBO:0000176" id="MAR01116" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01116" sboTerm="SBO:0000176" id="R_MAR01116" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -192679,7 +192716,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01116">
+            <rdf:Description rdf:about="#R_MAR01116">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.184"/>
@@ -192691,19 +192728,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00328c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00328c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00329c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00329c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Dhrs4"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01117" sboTerm="SBO:0000176" id="MAR01117" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01117" sboTerm="SBO:0000176" id="R_MAR01117" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -192712,7 +192749,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01117">
+            <rdf:Description rdf:about="#R_MAR01117">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.184"/>
@@ -192724,19 +192761,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00328r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00328r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00329r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00329r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Dhrs4"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01119" sboTerm="SBO:0000176" id="MAR01119" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01119" sboTerm="SBO:0000176" id="R_MAR01119" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -192745,7 +192782,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01119">
+            <rdf:Description rdf:about="#R_MAR01119">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.5.1.18"/>
@@ -192757,11 +192794,11 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00326c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02026c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00326c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00333c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00333c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -192777,7 +192814,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01120" sboTerm="SBO:0000176" id="MAR01120" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01120" sboTerm="SBO:0000176" id="R_MAR01120" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -192786,7 +192823,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01120">
+            <rdf:Description rdf:about="#R_MAR01120">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.5.1.18"/>
@@ -192798,11 +192835,11 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00326m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02026m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00326m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00333m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00333m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -192818,7 +192855,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01121" sboTerm="SBO:0000176" id="MAR01121" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01121" sboTerm="SBO:0000176" id="R_MAR01121" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -192827,7 +192864,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01121">
+            <rdf:Description rdf:about="#R_MAR01121">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.5.1.18"/>
@@ -192839,11 +192876,11 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00326r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02026r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00326r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00333r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00333r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -192859,7 +192896,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01122" sboTerm="SBO:0000176" id="MAR01122" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01122" sboTerm="SBO:0000176" id="R_MAR01122" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -192868,7 +192905,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01122">
+            <rdf:Description rdf:about="#R_MAR01122">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.5.1.18"/>
@@ -192880,11 +192917,11 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00326x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02026x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00326x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00333x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00333x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -192900,7 +192937,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01123" sboTerm="SBO:0000176" id="MAR01123" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01123" sboTerm="SBO:0000176" id="R_MAR01123" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -192909,7 +192946,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01123">
+            <rdf:Description rdf:about="#R_MAR01123">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.184"/>
@@ -192921,19 +192958,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00254c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00254c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00333c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00333c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Dhrs4"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01124" sboTerm="SBO:0000176" id="MAR01124" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01124" sboTerm="SBO:0000176" id="R_MAR01124" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -192942,7 +192979,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01124">
+            <rdf:Description rdf:about="#R_MAR01124">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.184"/>
@@ -192954,19 +192991,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00254m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00254m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00333m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00333m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Dhrs4"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01125" sboTerm="SBO:0000176" id="MAR01125" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01125" sboTerm="SBO:0000176" id="R_MAR01125" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -192975,7 +193012,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01125">
+            <rdf:Description rdf:about="#R_MAR01125">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.184"/>
@@ -192987,19 +193024,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00254x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00254x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00333x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00333x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Dhrs4"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01129" sboTerm="SBO:0000176" id="MAR01129" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01129" sboTerm="SBO:0000176" id="R_MAR01129" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -193008,7 +193045,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01129">
+            <rdf:Description rdf:about="#R_MAR01129">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.1"/>
@@ -193020,13 +193057,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00599c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00599c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00600c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00600c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -193035,7 +193072,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01130" sboTerm="SBO:0000176" id="MAR01130" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01130" sboTerm="SBO:0000176" id="R_MAR01130" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -193044,7 +193081,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01130">
+            <rdf:Description rdf:about="#R_MAR01130">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.1"/>
@@ -193056,13 +193093,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00599m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00599m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00600m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00600m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -193071,7 +193108,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01131" sboTerm="SBO:0000176" id="MAR01131" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01131" sboTerm="SBO:0000176" id="R_MAR01131" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -193080,7 +193117,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01131">
+            <rdf:Description rdf:about="#R_MAR01131">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.1"/>
@@ -193092,13 +193129,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00599r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00599r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00600r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00600r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -193107,7 +193144,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01132" sboTerm="SBO:0000176" id="MAR01132" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01132" sboTerm="SBO:0000176" id="R_MAR01132" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -193116,7 +193153,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01132">
+            <rdf:Description rdf:about="#R_MAR01132">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.2.1.3"/>
@@ -193128,14 +193165,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00585c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02553c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00585c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02553c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00600c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00600c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -193143,7 +193180,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01133" sboTerm="SBO:0000176" id="MAR01133" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01133" sboTerm="SBO:0000176" id="R_MAR01133" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -193152,7 +193189,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01133">
+            <rdf:Description rdf:about="#R_MAR01133">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.2.1.3"/>
@@ -193164,14 +193201,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00585m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00585m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00600m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00600m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -193179,7 +193216,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01134" sboTerm="SBO:0000176" id="MAR01134" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01134" sboTerm="SBO:0000176" id="R_MAR01134" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -193188,7 +193225,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01134">
+            <rdf:Description rdf:about="#R_MAR01134">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.2.1.3"/>
@@ -193200,14 +193237,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00585r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039r" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02553r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00585r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02553r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00600r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00600r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -193215,7 +193252,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01136" sboTerm="SBO:0000176" id="MAR01136" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01136" sboTerm="SBO:0000176" id="R_MAR01136" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -193224,7 +193261,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01136">
+            <rdf:Description rdf:about="#R_MAR01136">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR103771"/>
@@ -193235,14 +193272,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00588r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00588r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00600r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00600r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01142" sboTerm="SBO:0000176" id="MAR01142" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01142" sboTerm="SBO:0000176" id="R_MAR01142" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -193251,7 +193288,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01142">
+            <rdf:Description rdf:about="#R_MAR01142">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR103770"/>
@@ -193262,15 +193299,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00585r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00585r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00602r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00602r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01146" sboTerm="SBO:0000176" id="MAR01146" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01146" sboTerm="SBO:0000176" id="R_MAR01146" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -193279,7 +193316,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01146">
+            <rdf:Description rdf:about="#R_MAR01146">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.184"/>
@@ -193291,19 +193328,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01124c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01124c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01172c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01172c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Dhrs4"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01147" sboTerm="SBO:0000176" id="MAR01147" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01147" sboTerm="SBO:0000176" id="R_MAR01147" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -193312,7 +193349,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01147">
+            <rdf:Description rdf:about="#R_MAR01147">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.184"/>
@@ -193324,19 +193361,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01124m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01124m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01172m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01172m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Dhrs4"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01148" sboTerm="SBO:0000176" id="MAR01148" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01148" sboTerm="SBO:0000176" id="R_MAR01148" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -193345,7 +193382,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01148">
+            <rdf:Description rdf:about="#R_MAR01148">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.184"/>
@@ -193357,19 +193394,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01124x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01124x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01172x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01172x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Dhrs4"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01149" sboTerm="SBO:0000176" id="MAR01149" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01149" sboTerm="SBO:0000176" id="R_MAR01149" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -193377,7 +193414,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01149">
+            <rdf:Description rdf:about="#R_MAR01149">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR103870"/>
@@ -193388,13 +193425,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01124c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01124c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01152c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01152c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -193404,7 +193441,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01150" sboTerm="SBO:0000176" id="MAR01150" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01150" sboTerm="SBO:0000176" id="R_MAR01150" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -193412,7 +193449,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01150">
+            <rdf:Description rdf:about="#R_MAR01150">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR103870"/>
@@ -193423,13 +193460,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01124m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01124m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01152m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01152m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -193439,7 +193476,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01151" sboTerm="SBO:0000176" id="MAR01151" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01151" sboTerm="SBO:0000176" id="R_MAR01151" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -193447,7 +193484,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01151">
+            <rdf:Description rdf:about="#R_MAR01151">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR103870"/>
@@ -193458,13 +193495,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01124r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01124r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01152r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01152r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -193474,7 +193511,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01152" sboTerm="SBO:0000176" id="MAR01152" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01152" sboTerm="SBO:0000176" id="R_MAR01152" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -193482,7 +193519,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01152">
+            <rdf:Description rdf:about="#R_MAR01152">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR103870"/>
@@ -193492,13 +193529,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01124x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01124x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01152x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01152x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -193508,7 +193545,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01153" sboTerm="SBO:0000176" id="MAR01153" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01153" sboTerm="SBO:0000176" id="R_MAR01153" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -193517,7 +193554,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01153">
+            <rdf:Description rdf:about="#R_MAR01153">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.14.1"/>
@@ -193529,13 +193566,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01152c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01152c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01153c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01153c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -193545,7 +193582,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01154" sboTerm="SBO:0000176" id="MAR01154" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01154" sboTerm="SBO:0000176" id="R_MAR01154" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -193554,7 +193591,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01154">
+            <rdf:Description rdf:about="#R_MAR01154">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.14.1"/>
@@ -193565,13 +193602,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01152m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01152m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01153m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01153m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -193581,7 +193618,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01155" sboTerm="SBO:0000176" id="MAR01155" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01155" sboTerm="SBO:0000176" id="R_MAR01155" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -193590,7 +193627,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01155">
+            <rdf:Description rdf:about="#R_MAR01155">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.14.1"/>
@@ -193602,13 +193639,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01152r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01152r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01153r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01153r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -193618,7 +193655,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01156" sboTerm="SBO:0000176" id="MAR01156" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01156" sboTerm="SBO:0000176" id="R_MAR01156" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -193627,7 +193664,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01156">
+            <rdf:Description rdf:about="#R_MAR01156">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.14.1"/>
@@ -193638,13 +193675,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01152x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01152x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01153x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01153x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -193654,7 +193691,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01157" sboTerm="SBO:0000176" id="MAR01157" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01157" sboTerm="SBO:0000176" id="R_MAR01157" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -193663,7 +193700,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01157">
+            <rdf:Description rdf:about="#R_MAR01157">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.3"/>
@@ -193675,14 +193712,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01120c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01334c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01120c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01152c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01152c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -193693,7 +193730,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01158" sboTerm="SBO:0000176" id="MAR01158" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01158" sboTerm="SBO:0000176" id="R_MAR01158" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -193702,7 +193739,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01158">
+            <rdf:Description rdf:about="#R_MAR01158">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.3"/>
@@ -193714,14 +193751,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01120m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01334m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01120m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01152m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01152m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -193732,7 +193769,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01159" sboTerm="SBO:0000176" id="MAR01159" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01159" sboTerm="SBO:0000176" id="R_MAR01159" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -193741,7 +193778,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01159">
+            <rdf:Description rdf:about="#R_MAR01159">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.3"/>
@@ -193752,14 +193789,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01120r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01334r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01120r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01152r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01152r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -193770,7 +193807,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01160" sboTerm="SBO:0000176" id="MAR01160" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01160" sboTerm="SBO:0000176" id="R_MAR01160" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -193779,7 +193816,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01160">
+            <rdf:Description rdf:about="#R_MAR01160">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.3"/>
@@ -193791,14 +193828,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01120x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01334x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01120x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01152x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01152x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -193809,7 +193846,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01161" sboTerm="SBO:0000176" id="MAR01161" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01161" sboTerm="SBO:0000176" id="R_MAR01161" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -193818,7 +193855,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01161">
+            <rdf:Description rdf:about="#R_MAR01161">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.3.6"/>
@@ -193830,12 +193867,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01120m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01120m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01119m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02041m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01119m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -193844,7 +193881,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01162" sboTerm="SBO:0000176" id="MAR01162" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01162" sboTerm="SBO:0000176" id="R_MAR01162" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -193853,7 +193890,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01162">
+            <rdf:Description rdf:about="#R_MAR01162">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.3.6"/>
@@ -193865,12 +193902,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01120x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01120x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01119x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02041x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01119x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -193879,7 +193916,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01163" sboTerm="SBO:0000176" id="MAR01163" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01163" sboTerm="SBO:0000176" id="R_MAR01163" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -193888,7 +193925,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01163">
+            <rdf:Description rdf:about="#R_MAR01163">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.17"/>
@@ -193900,14 +193937,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01119m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01119m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00689m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00689m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01164" sboTerm="SBO:0000176" id="MAR01164" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01164" sboTerm="SBO:0000176" id="R_MAR01164" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -193916,7 +193953,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01164">
+            <rdf:Description rdf:about="#R_MAR01164">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.17"/>
@@ -193928,14 +193965,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01119x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01119x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00689x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00689x" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01165" sboTerm="SBO:0000176" id="MAR01165" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01165" sboTerm="SBO:0000176" id="R_MAR01165" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -193944,7 +193981,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01165">
+            <rdf:Description rdf:about="#R_MAR01165">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.35"/>
@@ -193957,16 +193994,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00689m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00689m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00740m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00740m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01166" sboTerm="SBO:0000176" id="MAR01166" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01166" sboTerm="SBO:0000176" id="R_MAR01166" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -193975,7 +194012,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01166">
+            <rdf:Description rdf:about="#R_MAR01166">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.35"/>
@@ -193988,19 +194025,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00689x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00689x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00740x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00740x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Mfe2"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01167" sboTerm="SBO:0000176" id="MAR01167" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01167" sboTerm="SBO:0000176" id="R_MAR01167" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -194009,7 +194046,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01167">
+            <rdf:Description rdf:about="#R_MAR01167">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.16"/>
@@ -194022,15 +194059,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00740m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00740m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00836m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01261m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00836m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01168" sboTerm="SBO:0000176" id="MAR01168" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01168" sboTerm="SBO:0000176" id="R_MAR01168" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -194039,7 +194076,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01168">
+            <rdf:Description rdf:about="#R_MAR01168">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.16"/>
@@ -194051,18 +194088,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00740x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00740x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00836x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01261x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00836x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="didum"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01186" sboTerm="SBO:0000176" id="MAR01186" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01186" sboTerm="SBO:0000176" id="R_MAR01186" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -194071,7 +194108,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01186">
+            <rdf:Description rdf:about="#R_MAR01186">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_1186"/>
@@ -194081,13 +194118,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01118c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01118c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01123c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01123c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01190" sboTerm="SBO:0000176" id="MAR01190" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01190" sboTerm="SBO:0000176" id="R_MAR01190" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -194096,7 +194133,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01190">
+            <rdf:Description rdf:about="#R_MAR01190">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.184"/>
@@ -194107,19 +194144,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01118c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01118c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01171c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01171c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Dhrs4"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01191" sboTerm="SBO:0000176" id="MAR01191" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01191" sboTerm="SBO:0000176" id="R_MAR01191" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -194128,7 +194165,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01191">
+            <rdf:Description rdf:about="#R_MAR01191">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.184"/>
@@ -194139,19 +194176,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01118m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01118m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01171m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01171m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Dhrs4"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01192" sboTerm="SBO:0000176" id="MAR01192" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01192" sboTerm="SBO:0000176" id="R_MAR01192" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -194160,7 +194197,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01192">
+            <rdf:Description rdf:about="#R_MAR01192">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.184"/>
@@ -194171,19 +194208,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01118x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01118x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01171x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01171x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Dhrs4"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01193" sboTerm="SBO:0000176" id="MAR01193" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01193" sboTerm="SBO:0000176" id="R_MAR01193" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -194192,7 +194229,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01193">
+            <rdf:Description rdf:about="#R_MAR01193">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.14.1"/>
@@ -194203,13 +194240,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01118c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01118c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01151c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01151c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -194219,7 +194256,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01194" sboTerm="SBO:0000176" id="MAR01194" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01194" sboTerm="SBO:0000176" id="R_MAR01194" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -194228,7 +194265,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01194">
+            <rdf:Description rdf:about="#R_MAR01194">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.14.1"/>
@@ -194239,13 +194276,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01118m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01118m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01151m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01151m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -194255,7 +194292,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01195" sboTerm="SBO:0000176" id="MAR01195" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01195" sboTerm="SBO:0000176" id="R_MAR01195" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -194264,7 +194301,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01195">
+            <rdf:Description rdf:about="#R_MAR01195">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.14.1"/>
@@ -194275,13 +194312,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01118r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01118r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01151r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01151r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -194291,7 +194328,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01196" sboTerm="SBO:0000176" id="MAR01196" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01196" sboTerm="SBO:0000176" id="R_MAR01196" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -194300,7 +194337,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01196">
+            <rdf:Description rdf:about="#R_MAR01196">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.14.1"/>
@@ -194311,13 +194348,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01118x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01118x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01151x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01151x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -194327,7 +194364,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01197" sboTerm="SBO:0000176" id="MAR01197" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01197" sboTerm="SBO:0000176" id="R_MAR01197" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -194335,7 +194372,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01197">
+            <rdf:Description rdf:about="#R_MAR01197">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_1197"/>
@@ -194345,16 +194382,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01150c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01150c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01151c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01151c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01198" sboTerm="SBO:0000176" id="MAR01198" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01198" sboTerm="SBO:0000176" id="R_MAR01198" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -194362,7 +194399,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01198">
+            <rdf:Description rdf:about="#R_MAR01198">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_1198"/>
@@ -194372,16 +194409,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01150m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01150m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01151m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01151m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01199" sboTerm="SBO:0000176" id="MAR01199" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01199" sboTerm="SBO:0000176" id="R_MAR01199" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -194389,7 +194426,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01199">
+            <rdf:Description rdf:about="#R_MAR01199">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_1199"/>
@@ -194399,16 +194436,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01150x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01150x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01151x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01151x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555x" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01200" sboTerm="SBO:0000176" id="MAR01200" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01200" sboTerm="SBO:0000176" id="R_MAR01200" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -194417,7 +194454,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01200">
+            <rdf:Description rdf:about="#R_MAR01200">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.3"/>
@@ -194429,14 +194466,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01122c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01334c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01122c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01151c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01151c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -194447,7 +194484,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01201" sboTerm="SBO:0000176" id="MAR01201" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01201" sboTerm="SBO:0000176" id="R_MAR01201" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -194456,7 +194493,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01201">
+            <rdf:Description rdf:about="#R_MAR01201">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.3"/>
@@ -194468,14 +194505,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01122m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01334m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01122m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01151m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01151m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -194486,7 +194523,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01202" sboTerm="SBO:0000176" id="MAR01202" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01202" sboTerm="SBO:0000176" id="R_MAR01202" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -194495,7 +194532,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01202">
+            <rdf:Description rdf:about="#R_MAR01202">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.3"/>
@@ -194507,14 +194544,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01122r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01334r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01122r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01151r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01151r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -194525,7 +194562,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01203" sboTerm="SBO:0000176" id="MAR01203" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01203" sboTerm="SBO:0000176" id="R_MAR01203" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -194534,7 +194571,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01203">
+            <rdf:Description rdf:about="#R_MAR01203">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.3"/>
@@ -194546,14 +194583,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01122x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01334x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01122x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01151x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01151x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -194564,7 +194601,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01204" sboTerm="SBO:0000176" id="MAR01204" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01204" sboTerm="SBO:0000176" id="R_MAR01204" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -194573,7 +194610,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01204">
+            <rdf:Description rdf:about="#R_MAR01204">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.3.6"/>
@@ -194585,12 +194622,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01122m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01122m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01121m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02041m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01121m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -194599,7 +194636,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01205" sboTerm="SBO:0000176" id="MAR01205" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01205" sboTerm="SBO:0000176" id="R_MAR01205" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -194608,7 +194645,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01205">
+            <rdf:Description rdf:about="#R_MAR01205">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.3.6"/>
@@ -194620,12 +194657,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01122x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01122x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01121x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02041x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01121x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -194634,7 +194671,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01206" sboTerm="SBO:0000176" id="MAR01206" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01206" sboTerm="SBO:0000176" id="R_MAR01206" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -194643,7 +194680,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01206">
+            <rdf:Description rdf:about="#R_MAR01206">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.17"/>
@@ -194655,14 +194692,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01121m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01121m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00690m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00690m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01207" sboTerm="SBO:0000176" id="MAR01207" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01207" sboTerm="SBO:0000176" id="R_MAR01207" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -194671,7 +194708,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01207">
+            <rdf:Description rdf:about="#R_MAR01207">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.17"/>
@@ -194683,14 +194720,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01121x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01121x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00690x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00690x" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01208" sboTerm="SBO:0000176" id="MAR01208" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01208" sboTerm="SBO:0000176" id="R_MAR01208" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -194699,7 +194736,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01208">
+            <rdf:Description rdf:about="#R_MAR01208">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.35"/>
@@ -194712,16 +194749,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00690m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00690m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00741m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00741m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01209" sboTerm="SBO:0000176" id="MAR01209" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01209" sboTerm="SBO:0000176" id="R_MAR01209" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -194730,7 +194767,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01209">
+            <rdf:Description rdf:about="#R_MAR01209">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.35"/>
@@ -194743,19 +194780,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00690x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00690x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00741x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00741x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Mfe2"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01210" sboTerm="SBO:0000176" id="MAR01210" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01210" sboTerm="SBO:0000176" id="R_MAR01210" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -194764,7 +194801,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01210">
+            <rdf:Description rdf:about="#R_MAR01210">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.16"/>
@@ -194777,15 +194814,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00741m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00741m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00838m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01261m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00838m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01211" sboTerm="SBO:0000176" id="MAR01211" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01211" sboTerm="SBO:0000176" id="R_MAR01211" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -194794,7 +194831,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01211">
+            <rdf:Description rdf:about="#R_MAR01211">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.16"/>
@@ -194806,18 +194843,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00741x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00741x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00838x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01261x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00838x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="didum"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01228" sboTerm="SBO:0000176" id="MAR01228" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01228" sboTerm="SBO:0000176" id="R_MAR01228" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -194826,7 +194863,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01228">
+            <rdf:Description rdf:about="#R_MAR01228">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.1.-"/>
@@ -194838,13 +194875,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00326c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00326c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00253c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00253c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -194853,7 +194890,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01229" sboTerm="SBO:0000176" id="MAR01229" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01229" sboTerm="SBO:0000176" id="R_MAR01229" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -194862,7 +194899,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01229">
+            <rdf:Description rdf:about="#R_MAR01229">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.1.-"/>
@@ -194874,13 +194911,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00326m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00326m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00253m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00253m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -194889,7 +194926,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01230" sboTerm="SBO:0000176" id="MAR01230" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01230" sboTerm="SBO:0000176" id="R_MAR01230" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -194898,7 +194935,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01230">
+            <rdf:Description rdf:about="#R_MAR01230">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.1.-"/>
@@ -194910,13 +194947,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00326x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00326x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00253x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00253x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -194925,7 +194962,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01231" sboTerm="SBO:0000176" id="MAR01231" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01231" sboTerm="SBO:0000176" id="R_MAR01231" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -194934,7 +194971,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01231">
+            <rdf:Description rdf:about="#R_MAR01231">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.184"/>
@@ -194946,19 +194983,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00253c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00253c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00257c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00257c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Dhrs4"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01232" sboTerm="SBO:0000176" id="MAR01232" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01232" sboTerm="SBO:0000176" id="R_MAR01232" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -194967,7 +195004,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01232">
+            <rdf:Description rdf:about="#R_MAR01232">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.184"/>
@@ -194979,19 +195016,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00253m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00253m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00257m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00257m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Dhrs4"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01233" sboTerm="SBO:0000176" id="MAR01233" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01233" sboTerm="SBO:0000176" id="R_MAR01233" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -195000,7 +195037,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01233">
+            <rdf:Description rdf:about="#R_MAR01233">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.184"/>
@@ -195012,19 +195049,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00253x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00253x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00257x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00257x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Dhrs4"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01241" sboTerm="SBO:0000176" id="MAR01241" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01241" sboTerm="SBO:0000176" id="R_MAR01241" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -195032,7 +195069,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01241">
+            <rdf:Description rdf:about="#R_MAR01241">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR103905"/>
@@ -195043,15 +195080,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00256c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00256c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00583c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00583c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01244" sboTerm="SBO:0000176" id="MAR01244" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01244" sboTerm="SBO:0000176" id="R_MAR01244" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -195060,7 +195097,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01244">
+            <rdf:Description rdf:about="#R_MAR01244">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.184"/>
@@ -195072,19 +195109,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00583c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00583c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00585c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00585c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Dhrs4"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01245" sboTerm="SBO:0000176" id="MAR01245" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01245" sboTerm="SBO:0000176" id="R_MAR01245" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -195093,7 +195130,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01245">
+            <rdf:Description rdf:about="#R_MAR01245">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.184"/>
@@ -195105,19 +195142,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00583m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00583m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00585m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00585m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Dhrs4"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01246" sboTerm="SBO:0000176" id="MAR01246" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01246" sboTerm="SBO:0000176" id="R_MAR01246" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -195126,7 +195163,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01246">
+            <rdf:Description rdf:about="#R_MAR01246">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.184"/>
@@ -195138,19 +195175,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00583x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00583x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00585x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00585x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Dhrs4"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01247" sboTerm="SBO:0000176" id="MAR01247" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01247" sboTerm="SBO:0000176" id="R_MAR01247" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -195158,7 +195195,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01247">
+            <rdf:Description rdf:about="#R_MAR01247">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_1247"/>
@@ -195168,21 +195205,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00585m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01802m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00585m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01802m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00424m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01261m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01803m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00424m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01803m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01248" sboTerm="SBO:0000176" id="MAR01248" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01248" sboTerm="SBO:0000176" id="R_MAR01248" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -195191,7 +195228,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01248">
+            <rdf:Description rdf:about="#R_MAR01248">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.3"/>
@@ -195203,14 +195240,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00585c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00585c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00582c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01334c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00582c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -195221,7 +195258,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01249" sboTerm="SBO:0000176" id="MAR01249" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01249" sboTerm="SBO:0000176" id="R_MAR01249" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -195230,7 +195267,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01249">
+            <rdf:Description rdf:about="#R_MAR01249">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.3"/>
@@ -195242,14 +195279,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00585m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00585m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00582m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01334m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00582m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -195260,7 +195297,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01250" sboTerm="SBO:0000176" id="MAR01250" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01250" sboTerm="SBO:0000176" id="R_MAR01250" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -195269,7 +195306,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01250">
+            <rdf:Description rdf:about="#R_MAR01250">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.3"/>
@@ -195281,14 +195318,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00585r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00585r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00582r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01334r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00582r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -195299,7 +195336,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01251" sboTerm="SBO:0000176" id="MAR01251" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01251" sboTerm="SBO:0000176" id="R_MAR01251" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -195308,7 +195345,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01251">
+            <rdf:Description rdf:about="#R_MAR01251">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.3"/>
@@ -195320,14 +195357,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00585x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00585x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00582x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01334x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00582x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -195338,7 +195375,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01253" sboTerm="SBO:0000176" id="MAR01253" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01253" sboTerm="SBO:0000176" id="R_MAR01253" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -195347,7 +195384,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01253">
+            <rdf:Description rdf:about="#R_MAR01253">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.3.6"/>
@@ -195359,12 +195396,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00582m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00582m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00026m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02041m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00026m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -195373,7 +195410,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01254" sboTerm="SBO:0000176" id="MAR01254" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01254" sboTerm="SBO:0000176" id="R_MAR01254" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -195382,7 +195419,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01254">
+            <rdf:Description rdf:about="#R_MAR01254">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.3.6"/>
@@ -195394,12 +195431,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00582x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00582x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00026x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02041x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00026x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -195408,7 +195445,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01255" sboTerm="SBO:0000176" id="MAR01255" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01255" sboTerm="SBO:0000176" id="R_MAR01255" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -195417,7 +195454,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01255">
+            <rdf:Description rdf:about="#R_MAR01255">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.17"/>
@@ -195429,14 +195466,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00026m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00026m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00581m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00581m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01256" sboTerm="SBO:0000176" id="MAR01256" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01256" sboTerm="SBO:0000176" id="R_MAR01256" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -195445,7 +195482,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01256">
+            <rdf:Description rdf:about="#R_MAR01256">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.17"/>
@@ -195457,14 +195494,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00026x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00026x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00581x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00581x" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01257" sboTerm="SBO:0000176" id="MAR01257" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01257" sboTerm="SBO:0000176" id="R_MAR01257" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -195473,7 +195510,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01257">
+            <rdf:Description rdf:about="#R_MAR01257">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.35"/>
@@ -195486,16 +195523,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00581m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00581m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00420m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00420m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01258" sboTerm="SBO:0000176" id="MAR01258" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01258" sboTerm="SBO:0000176" id="R_MAR01258" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -195504,7 +195541,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01258">
+            <rdf:Description rdf:about="#R_MAR01258">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.35"/>
@@ -195517,19 +195554,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00581x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00581x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00420x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00420x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Mfe2"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01259" sboTerm="SBO:0000176" id="MAR01259" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01259" sboTerm="SBO:0000176" id="R_MAR01259" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -195538,7 +195575,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01259">
+            <rdf:Description rdf:about="#R_MAR01259">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.16"/>
@@ -195551,15 +195588,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00420m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00420m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00421m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01261m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00421m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01260" sboTerm="SBO:0000176" id="MAR01260" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01260" sboTerm="SBO:0000176" id="R_MAR01260" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -195568,7 +195605,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01260">
+            <rdf:Description rdf:about="#R_MAR01260">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.16"/>
@@ -195580,18 +195617,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00420x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00420x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00421x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01261x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00421x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="didum"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01263" sboTerm="SBO:0000176" id="MAR01263" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01263" sboTerm="SBO:0000176" id="R_MAR01263" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -195600,7 +195637,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01263">
+            <rdf:Description rdf:about="#R_MAR01263">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.3"/>
@@ -195612,14 +195649,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00258c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01334c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00258c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00257c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00257c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -195630,7 +195667,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01264" sboTerm="SBO:0000176" id="MAR01264" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01264" sboTerm="SBO:0000176" id="R_MAR01264" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -195639,7 +195676,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01264">
+            <rdf:Description rdf:about="#R_MAR01264">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.3"/>
@@ -195651,14 +195688,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00258m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01334m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00258m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00257m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00257m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -195669,7 +195706,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01265" sboTerm="SBO:0000176" id="MAR01265" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01265" sboTerm="SBO:0000176" id="R_MAR01265" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -195678,7 +195715,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01265">
+            <rdf:Description rdf:about="#R_MAR01265">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.3"/>
@@ -195689,14 +195726,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00258r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01334r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00258r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00257r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00257r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -195707,7 +195744,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01266" sboTerm="SBO:0000176" id="MAR01266" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01266" sboTerm="SBO:0000176" id="R_MAR01266" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -195716,7 +195753,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01266">
+            <rdf:Description rdf:about="#R_MAR01266">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.3"/>
@@ -195728,14 +195765,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00258x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01334x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00258x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00257x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00257x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -195746,7 +195783,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01270" sboTerm="SBO:0000176" id="MAR01270" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01270" sboTerm="SBO:0000176" id="R_MAR01270" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -195755,7 +195792,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01270">
+            <rdf:Description rdf:about="#R_MAR01270">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.3.6"/>
@@ -195767,12 +195804,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00258m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00258m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01037m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02041m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01037m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -195781,7 +195818,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01271" sboTerm="SBO:0000176" id="MAR01271" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01271" sboTerm="SBO:0000176" id="R_MAR01271" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -195790,7 +195827,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01271">
+            <rdf:Description rdf:about="#R_MAR01271">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.3.6"/>
@@ -195802,12 +195839,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00258x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00258x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01037x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02041x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01037x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -195816,7 +195853,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01272" sboTerm="SBO:0000176" id="MAR01272" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01272" sboTerm="SBO:0000176" id="R_MAR01272" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -195825,7 +195862,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01272">
+            <rdf:Description rdf:about="#R_MAR01272">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.17"/>
@@ -195837,14 +195874,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01037m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01037m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00691m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00691m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01273" sboTerm="SBO:0000176" id="MAR01273" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01273" sboTerm="SBO:0000176" id="R_MAR01273" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -195853,7 +195890,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01273">
+            <rdf:Description rdf:about="#R_MAR01273">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.17"/>
@@ -195865,14 +195902,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01037x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01037x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00691x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00691x" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01274" sboTerm="SBO:0000176" id="MAR01274" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01274" sboTerm="SBO:0000176" id="R_MAR01274" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -195881,7 +195918,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01274">
+            <rdf:Description rdf:about="#R_MAR01274">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.35"/>
@@ -195894,16 +195931,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00691m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00691m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00846m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00846m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01275" sboTerm="SBO:0000176" id="MAR01275" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01275" sboTerm="SBO:0000176" id="R_MAR01275" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -195912,7 +195949,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01275">
+            <rdf:Description rdf:about="#R_MAR01275">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.35"/>
@@ -195925,19 +195962,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00691x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00691x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00846x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00846x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Mfe2"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01276" sboTerm="SBO:0000176" id="MAR01276" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01276" sboTerm="SBO:0000176" id="R_MAR01276" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -195946,7 +195983,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01276">
+            <rdf:Description rdf:about="#R_MAR01276">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.16"/>
@@ -195959,15 +195996,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00846m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00846m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00688m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01261m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00688m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01277" sboTerm="SBO:0000176" id="MAR01277" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01277" sboTerm="SBO:0000176" id="R_MAR01277" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -195976,7 +196013,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01277">
+            <rdf:Description rdf:about="#R_MAR01277">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.16"/>
@@ -195988,18 +196025,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00846x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00846x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00688x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01261x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00688x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="didum"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01280" sboTerm="SBO:0000176" id="MAR01280" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01280" sboTerm="SBO:0000176" id="R_MAR01280" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -196007,7 +196044,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01280">
+            <rdf:Description rdf:about="#R_MAR01280">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.184"/>
@@ -196018,19 +196055,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00252c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00252c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00253c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00253c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Dhrs4"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01281" sboTerm="SBO:0000176" id="MAR01281" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01281" sboTerm="SBO:0000176" id="R_MAR01281" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -196038,7 +196075,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01281">
+            <rdf:Description rdf:about="#R_MAR01281">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.184"/>
@@ -196049,19 +196086,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00252m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00252m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00253m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00253m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Dhrs4"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01282" sboTerm="SBO:0000176" id="MAR01282" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01282" sboTerm="SBO:0000176" id="R_MAR01282" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -196069,7 +196106,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01282">
+            <rdf:Description rdf:about="#R_MAR01282">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.184"/>
@@ -196080,19 +196117,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00252x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00252x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00253x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00253x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Dhrs4"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01285" sboTerm="SBO:0000176" id="MAR01285" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01285" sboTerm="SBO:0000176" id="R_MAR01285" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -196101,7 +196138,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01285">
+            <rdf:Description rdf:about="#R_MAR01285">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR103899"/>
@@ -196112,13 +196149,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00252c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00252c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00257c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00257c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01287" sboTerm="SBO:0000176" id="MAR01287" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01287" sboTerm="SBO:0000176" id="R_MAR01287" name="(7E,9E,11Z,14Z)-(5S,6R)-6-(cystein-S-yl)-5-hydroxyicosa-7,9,11,14-tetraenoate,NADPH:oxygen oxidoreductase (20-hydroxylating)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -196127,7 +196164,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01287">
+            <rdf:Description rdf:about="#R_MAR01287">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.13.34"/>
@@ -196141,18 +196178,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02369x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02369x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00596x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00596x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554x" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01288" sboTerm="SBO:0000176" id="MAR01288" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01288" sboTerm="SBO:0000176" id="R_MAR01288" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -196161,7 +196198,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01288">
+            <rdf:Description rdf:about="#R_MAR01288">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.1"/>
@@ -196173,13 +196210,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00596x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00596x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00601x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00601x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -196188,7 +196225,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01289" sboTerm="SBO:0000176" id="MAR01289" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01289" sboTerm="SBO:0000176" id="R_MAR01289" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -196197,7 +196234,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01289">
+            <rdf:Description rdf:about="#R_MAR01289">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.2.1.3"/>
@@ -196209,14 +196246,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00601x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00601x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00586x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039x" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02553x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00586x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039x" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02553x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -196224,7 +196261,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01290" sboTerm="SBO:0000176" id="MAR01290" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01290" sboTerm="SBO:0000176" id="R_MAR01290" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -196233,7 +196270,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01290">
+            <rdf:Description rdf:about="#R_MAR01290">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.3"/>
@@ -196245,14 +196282,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00587x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01334x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00587x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00586x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00586x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -196263,7 +196300,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01291" sboTerm="SBO:0000176" id="MAR01291" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01291" sboTerm="SBO:0000176" id="R_MAR01291" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -196272,7 +196309,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01291">
+            <rdf:Description rdf:about="#R_MAR01291">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.3.6"/>
@@ -196284,12 +196321,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00587x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00587x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00027x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02041x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00027x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -196298,7 +196335,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01292" sboTerm="SBO:0000176" id="MAR01292" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01292" sboTerm="SBO:0000176" id="R_MAR01292" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -196307,7 +196344,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01292">
+            <rdf:Description rdf:about="#R_MAR01292">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.17"/>
@@ -196319,14 +196356,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00027x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00027x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00419x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00419x" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01293" sboTerm="SBO:0000176" id="MAR01293" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01293" sboTerm="SBO:0000176" id="R_MAR01293" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -196335,7 +196372,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01293">
+            <rdf:Description rdf:about="#R_MAR01293">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.35"/>
@@ -196348,19 +196385,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00419x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00419x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00584x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00584x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Mfe2"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01294" sboTerm="SBO:0000176" id="MAR01294" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01294" sboTerm="SBO:0000176" id="R_MAR01294" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -196369,7 +196406,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01294">
+            <rdf:Description rdf:about="#R_MAR01294">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.16"/>
@@ -196381,18 +196418,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00584x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00584x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02650x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02650x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="didum"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01296" sboTerm="SBO:0000176" id="MAR01296" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01296" sboTerm="SBO:0000176" id="R_MAR01296" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 2</p>
@@ -196401,7 +196438,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01296">
+            <rdf:Description rdf:about="#R_MAR01296">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.3.6"/>
@@ -196413,12 +196450,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02630x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02650x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02650x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00423x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02041x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00423x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -196427,7 +196464,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01298" sboTerm="SBO:0000176" id="MAR01298" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01298" sboTerm="SBO:0000176" id="R_MAR01298" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -196436,7 +196473,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01298">
+            <rdf:Description rdf:about="#R_MAR01298">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/5.3.3.8"/>
@@ -196447,13 +196484,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00401x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00401x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00422x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00422x" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01299" sboTerm="SBO:0000176" id="MAR01299" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01299" sboTerm="SBO:0000176" id="R_MAR01299" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -196462,7 +196499,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01299">
+            <rdf:Description rdf:about="#R_MAR01299">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.17"/>
@@ -196474,14 +196511,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00401x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00401x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00397x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00397x" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01300" sboTerm="SBO:0000176" id="MAR01300" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01300" sboTerm="SBO:0000176" id="R_MAR01300" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -196490,7 +196527,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01300">
+            <rdf:Description rdf:about="#R_MAR01300">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.35"/>
@@ -196503,19 +196540,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00397x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00397x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00398x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00398x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Mfe2"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01301" sboTerm="SBO:0000176" id="MAR01301" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01301" sboTerm="SBO:0000176" id="R_MAR01301" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -196523,7 +196560,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01301">
+            <rdf:Description rdf:about="#R_MAR01301">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.16"/>
@@ -196533,20 +196570,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00401x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00401x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039x" stoichiometry="5" constant="true"/>
-          <speciesReference species="MAM02652x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039x" stoichiometry="5" constant="true"/>
+          <speciesReference species="M_MAM02652x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="didum"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01303" sboTerm="SBO:0000176" id="MAR01303" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01303" sboTerm="SBO:0000176" id="R_MAR01303" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -196554,7 +196591,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01303">
+            <rdf:Description rdf:about="#R_MAR01303">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.3.6"/>
@@ -196565,13 +196602,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039x" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM02630x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02652x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039x" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM02630x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02652x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00015x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02041x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00015x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -196580,7 +196617,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04796" sboTerm="SBO:0000176" id="MAR04796" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04796" sboTerm="SBO:0000176" id="R_MAR04796" name="leukotriene-C4 hydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -196589,7 +196626,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04796">
+            <rdf:Description rdf:about="#R_MAR04796">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.2.2"/>
@@ -196603,15 +196640,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02366c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02366c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01974c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02418c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01974c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02418c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08546" sboTerm="SBO:0000176" id="MAR08546" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08546" sboTerm="SBO:0000176" id="R_MAR08546" name="(13E)-(15S)-11alpha,15-dihydroxy-9-oxoprost-13-enoate:NADP+ 15-oxidoreductase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -196619,7 +196656,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08546">
+            <rdf:Description rdf:about="#R_MAR08546">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CBR2"/>
@@ -196632,19 +196669,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00013c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00013c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02785c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02785c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Dhrs4"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08547" sboTerm="SBO:0000176" id="MAR08547" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08547" sboTerm="SBO:0000176" id="R_MAR08547" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -196652,7 +196689,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08547">
+            <rdf:Description rdf:about="#R_MAR08547">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/LTC4CP"/>
@@ -196666,15 +196703,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02366c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02366c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01986c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02370c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02370c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08548" sboTerm="SBO:0000176" id="MAR08548" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08548" sboTerm="SBO:0000176" id="R_MAR08548" name="leukotriene-C4 hydrolase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -196682,7 +196719,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08548">
+            <rdf:Description rdf:about="#R_MAR08548">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.2.2"/>
@@ -196696,15 +196733,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02366r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02366r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01974r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02418r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01974r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02418r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08549" sboTerm="SBO:0000176" id="MAR08549" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08549" sboTerm="SBO:0000176" id="R_MAR08549" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -196712,7 +196749,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08549">
+            <rdf:Description rdf:about="#R_MAR08549">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GGT6"/>
@@ -196725,15 +196762,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02370c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02370c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01974c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02369c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01974c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02369c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08552" sboTerm="SBO:0000176" id="MAR08552" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08552" sboTerm="SBO:0000176" id="R_MAR08552" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -196741,7 +196778,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08552">
+            <rdf:Description rdf:about="#R_MAR08552">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/LTD4DP"/>
@@ -196754,15 +196791,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02418c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02418c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01986c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02369c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02369c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08554" sboTerm="SBO:0000176" id="MAR08554" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08554" sboTerm="SBO:0000176" id="R_MAR08554" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -196770,7 +196807,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08554">
+            <rdf:Description rdf:about="#R_MAR08554">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.14.1"/>
@@ -196783,21 +196820,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01362r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01362r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00324r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00324r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Cyp18a1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08559" sboTerm="SBO:0000176" id="MAR08559" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08559" sboTerm="SBO:0000176" id="R_MAR08559" name="(5Z,13E)-(15S)-9alpha,11alpha-epidioxy-15-hydroxyprosta-5,13- dienoate D-isomerase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -196805,7 +196842,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08559">
+            <rdf:Description rdf:about="#R_MAR08559">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/5.3.99.2"/>
@@ -196821,16 +196858,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02783r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02783r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02794r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02794r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="GstS1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08560" sboTerm="SBO:0000176" id="MAR08560" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08560" sboTerm="SBO:0000176" id="R_MAR08560" name="(5Z,13E)-(15S)-9alpha,11alpha-epidioxy-15-hydroxyprosta-5,13- dienoate E-isomerase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -196838,7 +196875,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08560">
+            <rdf:Description rdf:about="#R_MAR08560">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/5.3.99.3"/>
@@ -196854,10 +196891,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02786r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02786r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02794r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02794r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -196868,7 +196905,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08561" sboTerm="SBO:0000176" id="MAR08561" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08561" sboTerm="SBO:0000176" id="R_MAR08561" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -196876,7 +196913,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08561">
+            <rdf:Description rdf:about="#R_MAR08561">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/P450LTB4r"/>
@@ -196887,16 +196924,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00599r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00599r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00585r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00585r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR00154" sboTerm="SBO:0000176" id="MAR00154" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00154" sboTerm="SBO:0000176" id="R_MAR00154" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -196905,7 +196942,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00154">
+            <rdf:Description rdf:about="#R_MAR00154">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.2.2"/>
@@ -196918,13 +196955,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02774c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02774c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02772c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02772c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -196934,7 +196971,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03476" sboTerm="SBO:0000176" id="MAR03476" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03476" sboTerm="SBO:0000176" id="R_MAR03476" name="Formyl-CoA hydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -196943,7 +196980,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03476">
+            <rdf:Description rdf:about="#R_MAR03476">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R00521"/>
@@ -196958,16 +196995,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01836x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01836x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01597x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01833x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01833x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039x" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03477" sboTerm="SBO:0000176" id="MAR03477" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03477" sboTerm="SBO:0000176" id="R_MAR03477" name="Formyl-CoA hydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -196976,7 +197013,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03477">
+            <rdf:Description rdf:about="#R_MAR03477">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R00521"/>
@@ -196990,16 +197027,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01836c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01836c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01833c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01833c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR00159" sboTerm="SBO:0000176" id="MAR00159" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00159" sboTerm="SBO:0000176" id="R_MAR00159" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -197008,7 +197045,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00159">
+            <rdf:Description rdf:about="#R_MAR00159">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.21"/>
@@ -197019,18 +197056,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01412c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01412c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02635c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02635c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="whd"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02591" sboTerm="SBO:0000176" id="MAR02591" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02591" sboTerm="SBO:0000176" id="R_MAR02591" name="Acetyl-CoA:carnitine O-acetyltransferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -197039,7 +197076,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02591">
+            <rdf:Description rdf:about="#R_MAR02591">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.21"/>
@@ -197053,18 +197090,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02634c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02634c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="whd"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02594" sboTerm="SBO:0000176" id="MAR02594" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02594" sboTerm="SBO:0000176" id="R_MAR02594" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -197073,7 +197110,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02594">
+            <rdf:Description rdf:about="#R_MAR02594">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.21"/>
@@ -197085,18 +197122,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02657c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02657c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02774c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02774c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="whd"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02599" sboTerm="SBO:0000176" id="MAR02599" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02599" sboTerm="SBO:0000176" id="R_MAR02599" name="palmitoyl-CoA:L-carnitine O-palmitoyltransferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -197105,7 +197142,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02599">
+            <rdf:Description rdf:about="#R_MAR02599">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.21"/>
@@ -197119,18 +197156,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02443c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02443c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02444c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02444c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="whd"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02602" sboTerm="SBO:0000176" id="MAR02602" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02602" sboTerm="SBO:0000176" id="R_MAR02602" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -197138,7 +197175,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02602">
+            <rdf:Description rdf:about="#R_MAR02602">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.21"/>
@@ -197150,18 +197187,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01729c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01729c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02345c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02345c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="whd"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02605" sboTerm="SBO:0000176" id="MAR02605" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02605" sboTerm="SBO:0000176" id="R_MAR02605" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -197169,7 +197206,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02605">
+            <rdf:Description rdf:about="#R_MAR02605">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.21"/>
@@ -197180,18 +197217,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03049c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03049c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03050c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03050c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="whd"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02608" sboTerm="SBO:0000176" id="MAR02608" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02608" sboTerm="SBO:0000176" id="R_MAR02608" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -197199,7 +197236,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02608">
+            <rdf:Description rdf:about="#R_MAR02608">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.21"/>
@@ -197211,18 +197248,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02973c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02973c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02495c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02495c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="whd"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02611" sboTerm="SBO:0000176" id="MAR02611" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02611" sboTerm="SBO:0000176" id="R_MAR02611" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -197230,7 +197267,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02611">
+            <rdf:Description rdf:about="#R_MAR02611">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.21"/>
@@ -197242,18 +197279,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00129c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00129c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02974c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02974c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="whd"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02614" sboTerm="SBO:0000176" id="MAR02614" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02614" sboTerm="SBO:0000176" id="R_MAR02614" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -197261,7 +197298,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02614">
+            <rdf:Description rdf:about="#R_MAR02614">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.21"/>
@@ -197272,18 +197309,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00118c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00118c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02975c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02975c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="whd"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02620" sboTerm="SBO:0000176" id="MAR02620" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02620" sboTerm="SBO:0000176" id="R_MAR02620" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -197291,7 +197328,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02620">
+            <rdf:Description rdf:about="#R_MAR02620">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.21"/>
@@ -197302,18 +197339,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01141c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01141c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02976c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02976c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="whd"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02623" sboTerm="SBO:0000176" id="MAR02623" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02623" sboTerm="SBO:0000176" id="R_MAR02623" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -197321,7 +197358,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02623">
+            <rdf:Description rdf:about="#R_MAR02623">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.21"/>
@@ -197333,18 +197370,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02688c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02688c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02689c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02689c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="whd"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02626" sboTerm="SBO:0000176" id="MAR02626" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02626" sboTerm="SBO:0000176" id="R_MAR02626" name="palmitoyl-CoA:L-carnitine O-palmitoyltransferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -197353,7 +197390,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02626">
+            <rdf:Description rdf:about="#R_MAR02626">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.21"/>
@@ -197369,18 +197406,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02411c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02411c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02678c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02678c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="whd"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02633" sboTerm="SBO:0000176" id="MAR02633" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02633" sboTerm="SBO:0000176" id="R_MAR02633" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -197388,7 +197425,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02633">
+            <rdf:Description rdf:about="#R_MAR02633">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.21"/>
@@ -197400,18 +197437,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01191c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01191c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02117c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02117c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="whd"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02636" sboTerm="SBO:0000176" id="MAR02636" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02636" sboTerm="SBO:0000176" id="R_MAR02636" name="palmitoyl-CoA:L-carnitine O-palmitoyltransferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -197420,7 +197457,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02636">
+            <rdf:Description rdf:about="#R_MAR02636">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.21"/>
@@ -197434,18 +197471,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02676c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02676c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02677c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02677c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="whd"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02642" sboTerm="SBO:0000176" id="MAR02642" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02642" sboTerm="SBO:0000176" id="R_MAR02642" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -197453,7 +197490,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02642">
+            <rdf:Description rdf:about="#R_MAR02642">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.21"/>
@@ -197464,18 +197501,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02100c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02100c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02101c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02101c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="whd"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02648" sboTerm="SBO:0000176" id="MAR02648" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02648" sboTerm="SBO:0000176" id="R_MAR02648" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -197483,7 +197520,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02648">
+            <rdf:Description rdf:about="#R_MAR02648">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.21"/>
@@ -197494,18 +197531,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00004c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00004c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02102c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02102c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="whd"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02651" sboTerm="SBO:0000176" id="MAR02651" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02651" sboTerm="SBO:0000176" id="R_MAR02651" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -197513,7 +197550,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02651">
+            <rdf:Description rdf:about="#R_MAR02651">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.21"/>
@@ -197524,18 +197561,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01237c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01237c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02103c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02103c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="whd"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02654" sboTerm="SBO:0000176" id="MAR02654" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02654" sboTerm="SBO:0000176" id="R_MAR02654" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -197543,7 +197580,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02654">
+            <rdf:Description rdf:about="#R_MAR02654">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.21"/>
@@ -197555,18 +197592,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02940c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02940c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02941c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02941c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="whd"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02657" sboTerm="SBO:0000176" id="MAR02657" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02657" sboTerm="SBO:0000176" id="R_MAR02657" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -197574,7 +197611,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02657">
+            <rdf:Description rdf:about="#R_MAR02657">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.21"/>
@@ -197586,18 +197623,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00020c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00020c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02639c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02639c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="whd"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02660" sboTerm="SBO:0000176" id="MAR02660" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02660" sboTerm="SBO:0000176" id="R_MAR02660" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -197605,7 +197642,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02660">
+            <rdf:Description rdf:about="#R_MAR02660">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.21"/>
@@ -197617,18 +197654,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02640c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02640c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01586c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01586c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="whd"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02663" sboTerm="SBO:0000176" id="MAR02663" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02663" sboTerm="SBO:0000176" id="R_MAR02663" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -197637,7 +197674,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02663">
+            <rdf:Description rdf:about="#R_MAR02663">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.21"/>
@@ -197647,18 +197684,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02410c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02410c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02647c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02647c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="whd"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02666" sboTerm="SBO:0000176" id="MAR02666" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02666" sboTerm="SBO:0000176" id="R_MAR02666" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -197666,7 +197703,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02666">
+            <rdf:Description rdf:about="#R_MAR02666">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.21"/>
@@ -197677,18 +197714,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00127c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00127c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00126c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00126c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="whd"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02669" sboTerm="SBO:0000176" id="MAR02669" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02669" sboTerm="SBO:0000176" id="R_MAR02669" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -197696,7 +197733,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02669">
+            <rdf:Description rdf:about="#R_MAR02669">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.21"/>
@@ -197707,18 +197744,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00116c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00116c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02638c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02638c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="whd"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02672" sboTerm="SBO:0000176" id="MAR02672" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02672" sboTerm="SBO:0000176" id="R_MAR02672" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -197726,7 +197763,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02672">
+            <rdf:Description rdf:about="#R_MAR02672">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.21"/>
@@ -197737,18 +197774,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00106c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00106c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00105c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00105c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="whd"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02675" sboTerm="SBO:0000176" id="MAR02675" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02675" sboTerm="SBO:0000176" id="R_MAR02675" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -197756,7 +197793,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02675">
+            <rdf:Description rdf:about="#R_MAR02675">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.21"/>
@@ -197767,18 +197804,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02611c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02611c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02612c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02612c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="whd"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02678" sboTerm="SBO:0000176" id="MAR02678" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02678" sboTerm="SBO:0000176" id="R_MAR02678" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -197786,7 +197823,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02678">
+            <rdf:Description rdf:about="#R_MAR02678">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.21"/>
@@ -197798,18 +197835,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01772c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01772c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01773c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01773c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="whd"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02681" sboTerm="SBO:0000176" id="MAR02681" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02681" sboTerm="SBO:0000176" id="R_MAR02681" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -197817,7 +197854,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02681">
+            <rdf:Description rdf:about="#R_MAR02681">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.21"/>
@@ -197828,18 +197865,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00018c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00018c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01776c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01776c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="whd"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02684" sboTerm="SBO:0000176" id="MAR02684" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02684" sboTerm="SBO:0000176" id="R_MAR02684" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -197847,7 +197884,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02684">
+            <rdf:Description rdf:about="#R_MAR02684">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.21"/>
@@ -197859,18 +197896,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00007c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00007c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01777c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01777c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="whd"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02687" sboTerm="SBO:0000176" id="MAR02687" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02687" sboTerm="SBO:0000176" id="R_MAR02687" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -197878,7 +197915,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02687">
+            <rdf:Description rdf:about="#R_MAR02687">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.21"/>
@@ -197890,18 +197927,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01236c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01236c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01775c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01775c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="whd"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02690" sboTerm="SBO:0000176" id="MAR02690" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02690" sboTerm="SBO:0000176" id="R_MAR02690" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -197909,7 +197946,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02690">
+            <rdf:Description rdf:about="#R_MAR02690">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.21"/>
@@ -197920,18 +197957,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00123c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00123c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00122c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00122c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="whd"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02693" sboTerm="SBO:0000176" id="MAR02693" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02693" sboTerm="SBO:0000176" id="R_MAR02693" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -197939,7 +197976,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02693">
+            <rdf:Description rdf:about="#R_MAR02693">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.21"/>
@@ -197950,18 +197987,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00101c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00101c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00100c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00100c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="whd"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02699" sboTerm="SBO:0000176" id="MAR02699" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02699" sboTerm="SBO:0000176" id="R_MAR02699" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -197969,7 +198006,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02699">
+            <rdf:Description rdf:about="#R_MAR02699">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.21"/>
@@ -197980,18 +198017,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02051c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02051c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02052c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02052c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="whd"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02702" sboTerm="SBO:0000176" id="MAR02702" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02702" sboTerm="SBO:0000176" id="R_MAR02702" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -197999,7 +198036,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02702">
+            <rdf:Description rdf:about="#R_MAR02702">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.21"/>
@@ -198010,18 +198047,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01724c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01724c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01725c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01725c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="whd"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02705" sboTerm="SBO:0000176" id="MAR02705" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02705" sboTerm="SBO:0000176" id="R_MAR02705" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -198029,7 +198066,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02705">
+            <rdf:Description rdf:about="#R_MAR02705">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.21"/>
@@ -198041,18 +198078,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00016c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00016c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01727c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01727c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="whd"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02708" sboTerm="SBO:0000176" id="MAR02708" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02708" sboTerm="SBO:0000176" id="R_MAR02708" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -198060,7 +198097,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02708">
+            <rdf:Description rdf:about="#R_MAR02708">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.21"/>
@@ -198071,18 +198108,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00006c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00006c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01726c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01726c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="whd"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02711" sboTerm="SBO:0000176" id="MAR02711" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02711" sboTerm="SBO:0000176" id="R_MAR02711" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -198090,7 +198127,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02711">
+            <rdf:Description rdf:about="#R_MAR02711">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.21"/>
@@ -198102,18 +198139,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02637c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02637c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02390c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02390c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="whd"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02714" sboTerm="SBO:0000176" id="MAR02714" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02714" sboTerm="SBO:0000176" id="R_MAR02714" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -198121,7 +198158,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02714">
+            <rdf:Description rdf:about="#R_MAR02714">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.21"/>
@@ -198132,18 +198169,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00108c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00108c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00107c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00107c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="whd"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02717" sboTerm="SBO:0000176" id="MAR02717" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02717" sboTerm="SBO:0000176" id="R_MAR02717" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -198151,7 +198188,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02717">
+            <rdf:Description rdf:about="#R_MAR02717">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.21"/>
@@ -198162,18 +198199,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00125c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00125c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00124c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00124c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="whd"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02720" sboTerm="SBO:0000176" id="MAR02720" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02720" sboTerm="SBO:0000176" id="R_MAR02720" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -198181,7 +198218,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02720">
+            <rdf:Description rdf:about="#R_MAR02720">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.21"/>
@@ -198192,18 +198229,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00103c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00103c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00102c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00102c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="whd"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02726" sboTerm="SBO:0000176" id="MAR02726" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02726" sboTerm="SBO:0000176" id="R_MAR02726" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -198211,7 +198248,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02726">
+            <rdf:Description rdf:about="#R_MAR02726">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.21"/>
@@ -198223,18 +198260,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00121c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00121c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00120c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00120c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="whd"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02730" sboTerm="SBO:0000176" id="MAR02730" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02730" sboTerm="SBO:0000176" id="R_MAR02730" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -198242,7 +198279,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02730">
+            <rdf:Description rdf:about="#R_MAR02730">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.21"/>
@@ -198254,18 +198291,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00095c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00095c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01723c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01723c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="whd"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02733" sboTerm="SBO:0000176" id="MAR02733" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02733" sboTerm="SBO:0000176" id="R_MAR02733" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -198273,7 +198310,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02733">
+            <rdf:Description rdf:about="#R_MAR02733">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.21"/>
@@ -198284,18 +198321,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00012c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00012c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00011c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00011c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="whd"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02736" sboTerm="SBO:0000176" id="MAR02736" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02736" sboTerm="SBO:0000176" id="R_MAR02736" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -198303,7 +198340,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02736">
+            <rdf:Description rdf:about="#R_MAR02736">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.21"/>
@@ -198314,18 +198351,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00343c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00343c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00342c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00342c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="whd"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02739" sboTerm="SBO:0000176" id="MAR02739" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02739" sboTerm="SBO:0000176" id="R_MAR02739" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -198333,7 +198370,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02739">
+            <rdf:Description rdf:about="#R_MAR02739">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.21"/>
@@ -198344,18 +198381,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00262c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00262c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00261c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00261c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="whd"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02742" sboTerm="SBO:0000176" id="MAR02742" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02742" sboTerm="SBO:0000176" id="R_MAR02742" name="palmitoyl-CoA:L-carnitine O-palmitoyltransferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -198364,7 +198401,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02742">
+            <rdf:Description rdf:about="#R_MAR02742">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.21"/>
@@ -198379,18 +198416,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02388c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02388c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02391c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02391c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="whd"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02746" sboTerm="SBO:0000176" id="MAR02746" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02746" sboTerm="SBO:0000176" id="R_MAR02746" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -198398,7 +198435,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02746">
+            <rdf:Description rdf:about="#R_MAR02746">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.21"/>
@@ -198409,18 +198446,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01933c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01933c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01934c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01934c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="whd"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02752" sboTerm="SBO:0000176" id="MAR02752" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02752" sboTerm="SBO:0000176" id="R_MAR02752" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -198428,7 +198465,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02752">
+            <rdf:Description rdf:about="#R_MAR02752">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.21"/>
@@ -198440,18 +198477,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01774c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01774c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01697c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01697c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="whd"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02755" sboTerm="SBO:0000176" id="MAR02755" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02755" sboTerm="SBO:0000176" id="R_MAR02755" name="palmitoyl-CoA:L-carnitine O-palmitoyltransferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -198460,7 +198497,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02755">
+            <rdf:Description rdf:about="#R_MAR02755">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.21"/>
@@ -198475,18 +198512,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01363c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01363c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01364c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01364c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="whd"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02759" sboTerm="SBO:0000176" id="MAR02759" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02759" sboTerm="SBO:0000176" id="R_MAR02759" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -198494,7 +198531,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02759">
+            <rdf:Description rdf:about="#R_MAR02759">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.21"/>
@@ -198506,18 +198543,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00119c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00119c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02636c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02636c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="whd"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02762" sboTerm="SBO:0000176" id="MAR02762" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02762" sboTerm="SBO:0000176" id="R_MAR02762" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -198525,7 +198562,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02762">
+            <rdf:Description rdf:about="#R_MAR02762">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.21"/>
@@ -198536,18 +198573,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00093c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00093c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00092c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00092c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="whd"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02768" sboTerm="SBO:0000176" id="MAR02768" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02768" sboTerm="SBO:0000176" id="R_MAR02768" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -198555,7 +198592,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02768">
+            <rdf:Description rdf:about="#R_MAR02768">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.21"/>
@@ -198567,18 +198604,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00009c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00009c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01770c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01770c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="whd"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02771" sboTerm="SBO:0000176" id="MAR02771" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02771" sboTerm="SBO:0000176" id="R_MAR02771" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -198586,7 +198623,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02771">
+            <rdf:Description rdf:about="#R_MAR02771">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.21"/>
@@ -198597,19 +198634,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00023c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00023c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00022c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00022c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="whd"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02774" sboTerm="SBO:0000176" id="MAR02774" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02774" sboTerm="SBO:0000176" id="R_MAR02774" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -198617,7 +198654,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02774">
+            <rdf:Description rdf:about="#R_MAR02774">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.21"/>
@@ -198628,18 +198665,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00264c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00264c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00263c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00263c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="whd"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02877" sboTerm="SBO:0000176" id="MAR02877" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02877" sboTerm="SBO:0000176" id="R_MAR02877" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -198647,7 +198684,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02877">
+            <rdf:Description rdf:about="#R_MAR02877">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.21"/>
@@ -198658,18 +198695,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00317c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00317c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00316c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00316c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="whd"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03032" sboTerm="SBO:0000176" id="MAR03032" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03032" sboTerm="SBO:0000176" id="R_MAR03032" name="Octanoyl-CoA:L-carnitine O-octanoyltransferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -198678,7 +198715,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03032">
+            <rdf:Description rdf:about="#R_MAR03032">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.21"/>
@@ -198690,18 +198727,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02409c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02409c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02644c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02644c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="whd"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03521" sboTerm="SBO:0000176" id="MAR03521" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03521" sboTerm="SBO:0000176" id="R_MAR03521" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -198709,7 +198746,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03521">
+            <rdf:Description rdf:about="#R_MAR03521">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR96377"/>
@@ -198720,15 +198757,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00933c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00933c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00950c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00950c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08419" sboTerm="SBO:0000176" id="MAR08419" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08419" sboTerm="SBO:0000176" id="R_MAR08419" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -198736,7 +198773,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08419">
+            <rdf:Description rdf:about="#R_MAR08419">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/DMHPTCRNCPT1"/>
@@ -198748,15 +198785,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00563c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00563c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00577c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00577c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR00160" sboTerm="SBO:0000185" id="MAR00160" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00160" sboTerm="SBO:0000185" id="R_MAR00160" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -198765,7 +198802,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00160">
+            <rdf:Description rdf:about="#R_MAR00160">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/r2438"/>
@@ -198776,18 +198813,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02635m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02635m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02348m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02635c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02635c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="colt"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00161" sboTerm="SBO:0000176" id="MAR00161" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00161" sboTerm="SBO:0000176" id="R_MAR00161" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -198796,7 +198833,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00161">
+            <rdf:Description rdf:about="#R_MAR00161">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.7"/>
@@ -198807,12 +198844,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02635m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02635m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01412m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01412m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -198821,7 +198858,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00162" sboTerm="SBO:0000185" id="MAR00162" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00162" sboTerm="SBO:0000185" id="R_MAR00162" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -198830,7 +198867,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00162">
+            <rdf:Description rdf:about="#R_MAR00162">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/r2434"/>
@@ -198841,18 +198878,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02348m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02409c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02409c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02409m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02409m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="colt"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00163" sboTerm="SBO:0000176" id="MAR00163" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00163" sboTerm="SBO:0000176" id="R_MAR00163" name="Octanoyl-CoA:L-carnitine O-octanoyltransferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -198861,7 +198898,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00163">
+            <rdf:Description rdf:about="#R_MAR00163">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.137"/>
@@ -198875,18 +198912,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02409m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02409m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02348m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02644m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02644m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CROT"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02592" sboTerm="SBO:0000185" id="MAR02592" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02592" sboTerm="SBO:0000185" id="R_MAR02592" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -198895,7 +198932,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02592">
+            <rdf:Description rdf:about="#R_MAR02592">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CRNCARtm"/>
@@ -198908,12 +198945,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02348m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02634c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02634c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02634m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02634m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -198922,7 +198959,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02593" sboTerm="SBO:0000176" id="MAR02593" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02593" sboTerm="SBO:0000176" id="R_MAR02593" name="Acetyl-CoA:carnitine O-acetyltransferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -198931,7 +198968,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02593">
+            <rdf:Description rdf:about="#R_MAR02593">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.7"/>
@@ -198945,12 +198982,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02634m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02634m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -198959,7 +198996,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02596" sboTerm="SBO:0000185" id="MAR02596" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02596" sboTerm="SBO:0000185" id="R_MAR02596" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -198968,7 +199005,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02596">
+            <rdf:Description rdf:about="#R_MAR02596">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/r2437"/>
@@ -198980,12 +199017,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02657m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02657m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02348m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02657c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02657c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -198994,7 +199031,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02598" sboTerm="SBO:0000176" id="MAR02598" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02598" sboTerm="SBO:0000176" id="R_MAR02598" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -199003,7 +199040,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02598">
+            <rdf:Description rdf:about="#R_MAR02598">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.7"/>
@@ -199016,12 +199053,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02657m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02657m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02348m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02774m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02774m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -199030,7 +199067,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02600" sboTerm="SBO:0000185" id="MAR02600" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02600" sboTerm="SBO:0000185" id="R_MAR02600" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -199039,7 +199076,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02600">
+            <rdf:Description rdf:about="#R_MAR02600">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/r1005"/>
@@ -199050,12 +199087,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02348m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02443c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02443c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02443m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02443m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -199079,7 +199116,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02601" sboTerm="SBO:0000176" id="MAR02601" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02601" sboTerm="SBO:0000176" id="R_MAR02601" name="palmitoyl-CoA:L-carnitine O-palmitoyltransferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -199088,7 +199125,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02601">
+            <rdf:Description rdf:about="#R_MAR02601">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.7"/>
@@ -199102,12 +199139,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02443m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02443m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02348m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02444m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02444m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -199116,7 +199153,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02603" sboTerm="SBO:0000185" id="MAR02603" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02603" sboTerm="SBO:0000185" id="R_MAR02603" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -199124,7 +199161,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02603">
+            <rdf:Description rdf:about="#R_MAR02603">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/HMR_2603"/>
@@ -199136,12 +199173,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01729m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01729m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01729c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01729c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -199165,7 +199202,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02604" sboTerm="SBO:0000176" id="MAR02604" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02604" sboTerm="SBO:0000176" id="R_MAR02604" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -199173,7 +199210,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02604">
+            <rdf:Description rdf:about="#R_MAR02604">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.7"/>
@@ -199185,12 +199222,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01729m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01729m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02345m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02345m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -199199,7 +199236,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02606" sboTerm="SBO:0000185" id="MAR02606" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02606" sboTerm="SBO:0000185" id="R_MAR02606" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -199207,7 +199244,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02606">
+            <rdf:Description rdf:about="#R_MAR02606">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_2606"/>
@@ -199218,12 +199255,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03049m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03049m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02348m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03049c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03049c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -199247,7 +199284,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02607" sboTerm="SBO:0000176" id="MAR02607" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02607" sboTerm="SBO:0000176" id="R_MAR02607" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -199255,7 +199292,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02607">
+            <rdf:Description rdf:about="#R_MAR02607">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.7"/>
@@ -199266,12 +199303,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03049m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03049m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02348m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03050m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03050m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -199280,7 +199317,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02609" sboTerm="SBO:0000185" id="MAR02609" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02609" sboTerm="SBO:0000185" id="R_MAR02609" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -199288,7 +199325,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02609">
+            <rdf:Description rdf:about="#R_MAR02609">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/HMR_2609"/>
@@ -199300,12 +199337,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02973m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02973m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02348m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02973c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02973c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -199329,7 +199366,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02610" sboTerm="SBO:0000176" id="MAR02610" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02610" sboTerm="SBO:0000176" id="R_MAR02610" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -199337,7 +199374,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02610">
+            <rdf:Description rdf:about="#R_MAR02610">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.7"/>
@@ -199350,12 +199387,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02973m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02973m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02348m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02495m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02495m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -199364,7 +199401,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02612" sboTerm="SBO:0000185" id="MAR02612" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02612" sboTerm="SBO:0000185" id="R_MAR02612" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -199372,7 +199409,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02612">
+            <rdf:Description rdf:about="#R_MAR02612">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CARN140t_m"/>
@@ -199384,12 +199421,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02974m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02974m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02348m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02974c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02974c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -199413,7 +199450,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02613" sboTerm="SBO:0000176" id="MAR02613" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02613" sboTerm="SBO:0000176" id="R_MAR02613" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -199421,7 +199458,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02613">
+            <rdf:Description rdf:about="#R_MAR02613">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.7"/>
@@ -199433,12 +199470,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00129m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00129m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02974m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02974m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -199447,7 +199484,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02616" sboTerm="SBO:0000185" id="MAR02616" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02616" sboTerm="SBO:0000185" id="R_MAR02616" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -199455,7 +199492,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02616">
+            <rdf:Description rdf:about="#R_MAR02616">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_2616"/>
@@ -199466,12 +199503,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02975m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02975m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02348m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02975c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02975c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -199495,7 +199532,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02618" sboTerm="SBO:0000176" id="MAR02618" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02618" sboTerm="SBO:0000176" id="R_MAR02618" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -199503,7 +199540,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02618">
+            <rdf:Description rdf:about="#R_MAR02618">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.7"/>
@@ -199514,12 +199551,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00118m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00118m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02975m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02975m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -199528,7 +199565,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02621" sboTerm="SBO:0000185" id="MAR02621" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02621" sboTerm="SBO:0000185" id="R_MAR02621" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -199536,7 +199573,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02621">
+            <rdf:Description rdf:about="#R_MAR02621">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_2621"/>
@@ -199547,12 +199584,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02976m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02976m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02348m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02976c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02976c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -199576,7 +199613,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02622" sboTerm="SBO:0000176" id="MAR02622" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02622" sboTerm="SBO:0000176" id="R_MAR02622" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -199584,7 +199621,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02622">
+            <rdf:Description rdf:about="#R_MAR02622">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.7"/>
@@ -199595,12 +199632,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01141m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01141m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02976m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02976m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -199609,7 +199646,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02624" sboTerm="SBO:0000185" id="MAR02624" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02624" sboTerm="SBO:0000185" id="R_MAR02624" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -199617,7 +199654,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02624">
+            <rdf:Description rdf:about="#R_MAR02624">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/HMR_2624"/>
@@ -199629,12 +199666,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02688m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02688m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02348m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02688c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02688c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -199658,7 +199695,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02625" sboTerm="SBO:0000176" id="MAR02625" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02625" sboTerm="SBO:0000176" id="R_MAR02625" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -199666,7 +199703,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02625">
+            <rdf:Description rdf:about="#R_MAR02625">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.7"/>
@@ -199678,12 +199715,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02688m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02688m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02348m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02689m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02689m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -199692,7 +199729,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02629" sboTerm="SBO:0000185" id="MAR02629" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02629" sboTerm="SBO:0000185" id="R_MAR02629" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -199701,7 +199738,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02629">
+            <rdf:Description rdf:about="#R_MAR02629">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/r2435"/>
@@ -199712,12 +199749,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02411m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02411m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02348m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02411c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02411c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -199741,7 +199778,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02630" sboTerm="SBO:0000176" id="MAR02630" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02630" sboTerm="SBO:0000176" id="R_MAR02630" name="palmitoyl-CoA:L-carnitine O-palmitoyltransferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -199750,7 +199787,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02630">
+            <rdf:Description rdf:about="#R_MAR02630">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.7"/>
@@ -199765,12 +199802,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02411m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02411m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02348m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02678m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02678m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -199779,7 +199816,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02634" sboTerm="SBO:0000185" id="MAR02634" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02634" sboTerm="SBO:0000185" id="R_MAR02634" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -199787,7 +199824,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02634">
+            <rdf:Description rdf:about="#R_MAR02634">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/HMR_2634"/>
@@ -199799,12 +199836,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02117m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02117m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02117c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02117c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -199828,7 +199865,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02635" sboTerm="SBO:0000176" id="MAR02635" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02635" sboTerm="SBO:0000176" id="R_MAR02635" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -199836,7 +199873,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02635">
+            <rdf:Description rdf:about="#R_MAR02635">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.7"/>
@@ -199848,12 +199885,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01191m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01191m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02117m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02117m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -199862,7 +199899,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02638" sboTerm="SBO:0000185" id="MAR02638" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02638" sboTerm="SBO:0000185" id="R_MAR02638" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -199871,7 +199908,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02638">
+            <rdf:Description rdf:about="#R_MAR02638">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CARN1619Zt_m"/>
@@ -199883,12 +199920,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02676m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02676m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02348m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02676c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02676c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -199912,7 +199949,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02640" sboTerm="SBO:0000176" id="MAR02640" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02640" sboTerm="SBO:0000176" id="R_MAR02640" name="palmitoyl-CoA:L-carnitine O-palmitoyltransferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -199921,7 +199958,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02640">
+            <rdf:Description rdf:about="#R_MAR02640">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.7"/>
@@ -199936,12 +199973,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02676m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02676m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02348m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02677m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02677m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -199950,7 +199987,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02644" sboTerm="SBO:0000185" id="MAR02644" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02644" sboTerm="SBO:0000185" id="R_MAR02644" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -199958,7 +199995,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02644">
+            <rdf:Description rdf:about="#R_MAR02644">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_2644"/>
@@ -199969,12 +200006,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02100m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02100m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02100c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02100c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -199998,7 +200035,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02646" sboTerm="SBO:0000176" id="MAR02646" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02646" sboTerm="SBO:0000176" id="R_MAR02646" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -200006,7 +200043,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02646">
+            <rdf:Description rdf:about="#R_MAR02646">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.7"/>
@@ -200017,12 +200054,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02100m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02100m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02101m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02101m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -200031,7 +200068,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02649" sboTerm="SBO:0000185" id="MAR02649" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02649" sboTerm="SBO:0000185" id="R_MAR02649" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -200039,7 +200076,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02649">
+            <rdf:Description rdf:about="#R_MAR02649">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_2649"/>
@@ -200050,12 +200087,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02102m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02102m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02102c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02102c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -200079,7 +200116,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02650" sboTerm="SBO:0000176" id="MAR02650" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02650" sboTerm="SBO:0000176" id="R_MAR02650" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -200087,7 +200124,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02650">
+            <rdf:Description rdf:about="#R_MAR02650">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.7"/>
@@ -200098,12 +200135,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00004m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00004m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02102m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02102m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -200112,7 +200149,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02652" sboTerm="SBO:0000185" id="MAR02652" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02652" sboTerm="SBO:0000185" id="R_MAR02652" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -200120,7 +200157,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02652">
+            <rdf:Description rdf:about="#R_MAR02652">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_2652"/>
@@ -200131,12 +200168,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02103m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02103m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02103c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02103c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -200160,7 +200197,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02653" sboTerm="SBO:0000176" id="MAR02653" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02653" sboTerm="SBO:0000176" id="R_MAR02653" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -200168,7 +200205,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02653">
+            <rdf:Description rdf:about="#R_MAR02653">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.7"/>
@@ -200179,12 +200216,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01237m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01237m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02103m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02103m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -200193,7 +200230,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02655" sboTerm="SBO:0000185" id="MAR02655" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02655" sboTerm="SBO:0000185" id="R_MAR02655" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -200201,7 +200238,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02655">
+            <rdf:Description rdf:about="#R_MAR02655">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CARN180t_m"/>
@@ -200213,12 +200250,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02940m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02940m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02348m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02940c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02940c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -200242,7 +200279,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02656" sboTerm="SBO:0000176" id="MAR02656" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02656" sboTerm="SBO:0000176" id="R_MAR02656" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -200250,7 +200287,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02656">
+            <rdf:Description rdf:about="#R_MAR02656">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.7"/>
@@ -200262,12 +200299,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02940m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02940m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02348m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02941m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02941m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -200276,7 +200313,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02658" sboTerm="SBO:0000185" id="MAR02658" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02658" sboTerm="SBO:0000185" id="R_MAR02658" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -200284,7 +200321,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02658">
+            <rdf:Description rdf:about="#R_MAR02658">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CARN1819Zt_m"/>
@@ -200296,12 +200333,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02639m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02639m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02348m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02639c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02639c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -200325,7 +200362,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02659" sboTerm="SBO:0000176" id="MAR02659" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02659" sboTerm="SBO:0000176" id="R_MAR02659" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -200333,7 +200370,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02659">
+            <rdf:Description rdf:about="#R_MAR02659">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.7"/>
@@ -200345,12 +200382,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00020m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00020m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02639m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02639m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -200359,7 +200396,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02661" sboTerm="SBO:0000185" id="MAR02661" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02661" sboTerm="SBO:0000185" id="R_MAR02661" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -200367,7 +200404,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02661">
+            <rdf:Description rdf:about="#R_MAR02661">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/HMR_2661"/>
@@ -200379,12 +200416,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02640m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02640m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02348m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02640c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02640c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -200408,7 +200445,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02662" sboTerm="SBO:0000176" id="MAR02662" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02662" sboTerm="SBO:0000176" id="R_MAR02662" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -200416,7 +200453,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02662">
+            <rdf:Description rdf:about="#R_MAR02662">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.7"/>
@@ -200428,12 +200465,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02640m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02640m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01586m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01586m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -200442,7 +200479,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02664" sboTerm="SBO:0000185" id="MAR02664" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02664" sboTerm="SBO:0000185" id="R_MAR02664" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -200451,7 +200488,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02664">
+            <rdf:Description rdf:about="#R_MAR02664">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/tcdb/2.A.29.8.3"/>
@@ -200461,12 +200498,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02410m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02410m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02348m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02410c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02410c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -200490,7 +200527,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02665" sboTerm="SBO:0000176" id="MAR02665" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02665" sboTerm="SBO:0000176" id="R_MAR02665" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -200499,7 +200536,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02665">
+            <rdf:Description rdf:about="#R_MAR02665">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.7"/>
@@ -200509,12 +200546,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02410m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02410m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02348m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02647m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02647m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -200523,7 +200560,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02667" sboTerm="SBO:0000185" id="MAR02667" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02667" sboTerm="SBO:0000185" id="R_MAR02667" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -200531,7 +200568,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02667">
+            <rdf:Description rdf:about="#R_MAR02667">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_2667"/>
@@ -200542,12 +200579,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00126c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00126c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00126m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00126m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -200571,7 +200608,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02668" sboTerm="SBO:0000176" id="MAR02668" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02668" sboTerm="SBO:0000176" id="R_MAR02668" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -200579,7 +200616,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02668">
+            <rdf:Description rdf:about="#R_MAR02668">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.7"/>
@@ -200590,12 +200627,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00127m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00127m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00126m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00126m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -200604,7 +200641,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02670" sboTerm="SBO:0000185" id="MAR02670" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02670" sboTerm="SBO:0000185" id="R_MAR02670" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -200612,7 +200649,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02670">
+            <rdf:Description rdf:about="#R_MAR02670">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_2670"/>
@@ -200623,12 +200660,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02638m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02638m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02348m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02638c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02638c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -200652,7 +200689,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02671" sboTerm="SBO:0000176" id="MAR02671" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02671" sboTerm="SBO:0000176" id="R_MAR02671" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -200660,7 +200697,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02671">
+            <rdf:Description rdf:about="#R_MAR02671">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.7"/>
@@ -200671,12 +200708,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00116m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00116m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02638m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02638m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -200685,7 +200722,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02673" sboTerm="SBO:0000185" id="MAR02673" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02673" sboTerm="SBO:0000185" id="R_MAR02673" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -200693,7 +200730,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02673">
+            <rdf:Description rdf:about="#R_MAR02673">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_2673"/>
@@ -200704,12 +200741,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00105c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00105c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00105m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00105m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -200733,7 +200770,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02674" sboTerm="SBO:0000176" id="MAR02674" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02674" sboTerm="SBO:0000176" id="R_MAR02674" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -200741,7 +200778,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02674">
+            <rdf:Description rdf:about="#R_MAR02674">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.7"/>
@@ -200752,12 +200789,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00106m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00106m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00105m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00105m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -200766,7 +200803,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02676" sboTerm="SBO:0000185" id="MAR02676" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02676" sboTerm="SBO:0000185" id="R_MAR02676" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -200774,7 +200811,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02676">
+            <rdf:Description rdf:about="#R_MAR02676">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_2676"/>
@@ -200785,12 +200822,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02611m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02611m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02348m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02611c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02611c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -200814,7 +200851,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02677" sboTerm="SBO:0000176" id="MAR02677" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02677" sboTerm="SBO:0000176" id="R_MAR02677" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -200822,7 +200859,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02677">
+            <rdf:Description rdf:about="#R_MAR02677">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.7"/>
@@ -200833,12 +200870,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02611m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02611m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02348m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02612m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02612m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -200847,7 +200884,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02679" sboTerm="SBO:0000185" id="MAR02679" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02679" sboTerm="SBO:0000185" id="R_MAR02679" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -200855,7 +200892,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02679">
+            <rdf:Description rdf:about="#R_MAR02679">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/HMR_2679"/>
@@ -200867,12 +200904,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01772m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01772m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01772c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01772c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -200896,7 +200933,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02680" sboTerm="SBO:0000176" id="MAR02680" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02680" sboTerm="SBO:0000176" id="R_MAR02680" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -200904,7 +200941,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02680">
+            <rdf:Description rdf:about="#R_MAR02680">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.7"/>
@@ -200916,12 +200953,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01772m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01772m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01773m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01773m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -200930,7 +200967,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02682" sboTerm="SBO:0000185" id="MAR02682" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02682" sboTerm="SBO:0000185" id="R_MAR02682" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -200938,7 +200975,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02682">
+            <rdf:Description rdf:about="#R_MAR02682">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_2682"/>
@@ -200949,12 +200986,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01776m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01776m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01776c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01776c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -200978,7 +201015,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02683" sboTerm="SBO:0000176" id="MAR02683" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02683" sboTerm="SBO:0000176" id="R_MAR02683" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -200986,7 +201023,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02683">
+            <rdf:Description rdf:about="#R_MAR02683">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.7"/>
@@ -200997,12 +201034,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00018m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00018m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01776m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01776m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -201011,7 +201048,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02685" sboTerm="SBO:0000185" id="MAR02685" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02685" sboTerm="SBO:0000185" id="R_MAR02685" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -201019,7 +201056,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02685">
+            <rdf:Description rdf:about="#R_MAR02685">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/HMR_2685"/>
@@ -201031,12 +201068,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01777m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01777m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01777c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01777c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -201060,7 +201097,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02686" sboTerm="SBO:0000176" id="MAR02686" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02686" sboTerm="SBO:0000176" id="R_MAR02686" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -201068,7 +201105,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02686">
+            <rdf:Description rdf:about="#R_MAR02686">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.7"/>
@@ -201080,12 +201117,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00007m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00007m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01777m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01777m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -201094,7 +201131,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02688" sboTerm="SBO:0000185" id="MAR02688" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02688" sboTerm="SBO:0000185" id="R_MAR02688" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -201102,7 +201139,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02688">
+            <rdf:Description rdf:about="#R_MAR02688">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/HMR_2688"/>
@@ -201114,12 +201151,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01775m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01775m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01775c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01775c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -201143,7 +201180,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02689" sboTerm="SBO:0000176" id="MAR02689" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02689" sboTerm="SBO:0000176" id="R_MAR02689" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -201151,7 +201188,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02689">
+            <rdf:Description rdf:about="#R_MAR02689">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.7"/>
@@ -201163,12 +201200,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01236m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01236m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01775m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01775m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -201177,7 +201214,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02691" sboTerm="SBO:0000185" id="MAR02691" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02691" sboTerm="SBO:0000185" id="R_MAR02691" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -201185,7 +201222,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02691">
+            <rdf:Description rdf:about="#R_MAR02691">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_2691"/>
@@ -201196,12 +201233,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00122c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00122c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00122m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00122m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -201225,7 +201262,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02692" sboTerm="SBO:0000176" id="MAR02692" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02692" sboTerm="SBO:0000176" id="R_MAR02692" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -201233,7 +201270,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02692">
+            <rdf:Description rdf:about="#R_MAR02692">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.7"/>
@@ -201244,12 +201281,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00123m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00123m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00122m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00122m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -201258,7 +201295,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02695" sboTerm="SBO:0000185" id="MAR02695" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02695" sboTerm="SBO:0000185" id="R_MAR02695" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -201266,7 +201303,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02695">
+            <rdf:Description rdf:about="#R_MAR02695">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_2695"/>
@@ -201277,12 +201314,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00100c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00100c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00100m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00100m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -201306,7 +201343,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02697" sboTerm="SBO:0000176" id="MAR02697" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02697" sboTerm="SBO:0000176" id="R_MAR02697" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -201314,7 +201351,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02697">
+            <rdf:Description rdf:about="#R_MAR02697">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.7"/>
@@ -201325,12 +201362,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00101m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00101m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00100m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00100m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -201339,7 +201376,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02700" sboTerm="SBO:0000185" id="MAR02700" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02700" sboTerm="SBO:0000185" id="R_MAR02700" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -201347,7 +201384,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02700">
+            <rdf:Description rdf:about="#R_MAR02700">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_2700"/>
@@ -201358,12 +201395,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02051m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02051m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02051c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02051c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -201387,7 +201424,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02701" sboTerm="SBO:0000176" id="MAR02701" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02701" sboTerm="SBO:0000176" id="R_MAR02701" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -201395,7 +201432,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02701">
+            <rdf:Description rdf:about="#R_MAR02701">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.7"/>
@@ -201406,12 +201443,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02051m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02051m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02052m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02052m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -201420,7 +201457,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02703" sboTerm="SBO:0000185" id="MAR02703" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02703" sboTerm="SBO:0000185" id="R_MAR02703" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -201428,7 +201465,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02703">
+            <rdf:Description rdf:about="#R_MAR02703">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_2703"/>
@@ -201439,12 +201476,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01724m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01724m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01724c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01724c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -201468,7 +201505,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02704" sboTerm="SBO:0000176" id="MAR02704" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02704" sboTerm="SBO:0000176" id="R_MAR02704" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -201476,7 +201513,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02704">
+            <rdf:Description rdf:about="#R_MAR02704">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.7"/>
@@ -201487,12 +201524,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01724m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01724m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01725m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01725m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -201501,7 +201538,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02706" sboTerm="SBO:0000185" id="MAR02706" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02706" sboTerm="SBO:0000185" id="R_MAR02706" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -201509,7 +201546,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02706">
+            <rdf:Description rdf:about="#R_MAR02706">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/HMR_2706"/>
@@ -201521,12 +201558,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01727m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01727m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01727c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01727c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -201550,7 +201587,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02707" sboTerm="SBO:0000176" id="MAR02707" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02707" sboTerm="SBO:0000176" id="R_MAR02707" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -201558,7 +201595,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02707">
+            <rdf:Description rdf:about="#R_MAR02707">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.7"/>
@@ -201570,12 +201607,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00016m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00016m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01727m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01727m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -201584,7 +201621,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02709" sboTerm="SBO:0000185" id="MAR02709" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02709" sboTerm="SBO:0000185" id="R_MAR02709" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -201592,7 +201629,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02709">
+            <rdf:Description rdf:about="#R_MAR02709">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_2709"/>
@@ -201603,12 +201640,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01726m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01726m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01726c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01726c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -201632,7 +201669,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02710" sboTerm="SBO:0000176" id="MAR02710" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02710" sboTerm="SBO:0000176" id="R_MAR02710" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -201640,7 +201677,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02710">
+            <rdf:Description rdf:about="#R_MAR02710">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.7"/>
@@ -201651,12 +201688,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00006m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00006m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01726m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01726m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -201665,7 +201702,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02712" sboTerm="SBO:0000185" id="MAR02712" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02712" sboTerm="SBO:0000185" id="R_MAR02712" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -201673,7 +201710,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02712">
+            <rdf:Description rdf:about="#R_MAR02712">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/HMR_2712"/>
@@ -201685,12 +201722,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02637m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02637m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02348m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02637c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02637c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -201714,7 +201751,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02713" sboTerm="SBO:0000176" id="MAR02713" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02713" sboTerm="SBO:0000176" id="R_MAR02713" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -201722,7 +201759,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02713">
+            <rdf:Description rdf:about="#R_MAR02713">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.7"/>
@@ -201734,12 +201771,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02637m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02637m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02348m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02390m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02390m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -201748,7 +201785,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02715" sboTerm="SBO:0000185" id="MAR02715" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02715" sboTerm="SBO:0000185" id="R_MAR02715" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -201756,7 +201793,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02715">
+            <rdf:Description rdf:about="#R_MAR02715">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_2715"/>
@@ -201767,12 +201804,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00107c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00107c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00107m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00107m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -201796,7 +201833,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02716" sboTerm="SBO:0000176" id="MAR02716" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02716" sboTerm="SBO:0000176" id="R_MAR02716" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -201804,7 +201841,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02716">
+            <rdf:Description rdf:about="#R_MAR02716">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.7"/>
@@ -201815,12 +201852,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00108m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00108m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00107m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00107m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -201829,7 +201866,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02718" sboTerm="SBO:0000185" id="MAR02718" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02718" sboTerm="SBO:0000185" id="R_MAR02718" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -201837,7 +201874,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02718">
+            <rdf:Description rdf:about="#R_MAR02718">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_2718"/>
@@ -201848,12 +201885,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00124c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00124c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00124m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00124m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -201877,7 +201914,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02719" sboTerm="SBO:0000176" id="MAR02719" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02719" sboTerm="SBO:0000176" id="R_MAR02719" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -201885,7 +201922,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02719">
+            <rdf:Description rdf:about="#R_MAR02719">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.7"/>
@@ -201896,12 +201933,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00125m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00125m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00124m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00124m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -201910,7 +201947,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02722" sboTerm="SBO:0000185" id="MAR02722" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02722" sboTerm="SBO:0000185" id="R_MAR02722" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -201918,7 +201955,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02722">
+            <rdf:Description rdf:about="#R_MAR02722">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_2722"/>
@@ -201929,12 +201966,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00102c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00102c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00102m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00102m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -201958,7 +201995,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02724" sboTerm="SBO:0000176" id="MAR02724" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02724" sboTerm="SBO:0000176" id="R_MAR02724" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -201966,7 +202003,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02724">
+            <rdf:Description rdf:about="#R_MAR02724">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.7"/>
@@ -201977,12 +202014,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00103m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00103m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00102m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00102m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -201991,7 +202028,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02727" sboTerm="SBO:0000185" id="MAR02727" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02727" sboTerm="SBO:0000185" id="R_MAR02727" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -201999,7 +202036,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02727">
+            <rdf:Description rdf:about="#R_MAR02727">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/HMR_2727"/>
@@ -202011,12 +202048,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00120c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00120c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00120m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00120m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -202040,7 +202077,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02729" sboTerm="SBO:0000176" id="MAR02729" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02729" sboTerm="SBO:0000176" id="R_MAR02729" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -202048,7 +202085,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02729">
+            <rdf:Description rdf:about="#R_MAR02729">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.7"/>
@@ -202060,12 +202097,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00121m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00121m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00120m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00120m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -202074,7 +202111,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02731" sboTerm="SBO:0000185" id="MAR02731" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02731" sboTerm="SBO:0000185" id="R_MAR02731" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -202082,7 +202119,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02731">
+            <rdf:Description rdf:about="#R_MAR02731">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/HMR_2731"/>
@@ -202094,12 +202131,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01723m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01723m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01723c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01723c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -202123,7 +202160,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02732" sboTerm="SBO:0000176" id="MAR02732" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02732" sboTerm="SBO:0000176" id="R_MAR02732" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -202131,7 +202168,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02732">
+            <rdf:Description rdf:about="#R_MAR02732">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.7"/>
@@ -202143,12 +202180,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00095m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00095m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01723m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01723m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -202157,7 +202194,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02734" sboTerm="SBO:0000185" id="MAR02734" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02734" sboTerm="SBO:0000185" id="R_MAR02734" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -202165,7 +202202,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02734">
+            <rdf:Description rdf:about="#R_MAR02734">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_2734"/>
@@ -202176,12 +202213,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00011c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00011c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00011m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00011m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -202205,7 +202242,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02735" sboTerm="SBO:0000176" id="MAR02735" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02735" sboTerm="SBO:0000176" id="R_MAR02735" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -202213,7 +202250,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02735">
+            <rdf:Description rdf:about="#R_MAR02735">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.7"/>
@@ -202224,12 +202261,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00012m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00012m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00011m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00011m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -202238,7 +202275,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02737" sboTerm="SBO:0000185" id="MAR02737" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02737" sboTerm="SBO:0000185" id="R_MAR02737" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -202246,7 +202283,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02737">
+            <rdf:Description rdf:about="#R_MAR02737">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_2737"/>
@@ -202257,12 +202294,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00342c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00342c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00342m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00342m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -202286,7 +202323,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02738" sboTerm="SBO:0000176" id="MAR02738" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02738" sboTerm="SBO:0000176" id="R_MAR02738" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -202294,7 +202331,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02738">
+            <rdf:Description rdf:about="#R_MAR02738">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.7"/>
@@ -202305,12 +202342,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00343m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00343m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00342m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00342m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -202319,7 +202356,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02740" sboTerm="SBO:0000185" id="MAR02740" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02740" sboTerm="SBO:0000185" id="R_MAR02740" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -202327,7 +202364,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02740">
+            <rdf:Description rdf:about="#R_MAR02740">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_2740"/>
@@ -202338,12 +202375,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00261c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00261c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00261m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00261m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -202367,7 +202404,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02741" sboTerm="SBO:0000176" id="MAR02741" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02741" sboTerm="SBO:0000176" id="R_MAR02741" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -202375,7 +202412,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02741">
+            <rdf:Description rdf:about="#R_MAR02741">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.7"/>
@@ -202386,12 +202423,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00262m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00262m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00261m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00261m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -202400,7 +202437,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02744" sboTerm="SBO:0000185" id="MAR02744" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02744" sboTerm="SBO:0000185" id="R_MAR02744" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -202408,7 +202445,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02744">
+            <rdf:Description rdf:about="#R_MAR02744">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CARN1829Z12Zt_m"/>
@@ -202420,12 +202457,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02388m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02388m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02348m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02388c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02388c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -202449,7 +202486,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02745" sboTerm="SBO:0000176" id="MAR02745" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02745" sboTerm="SBO:0000176" id="R_MAR02745" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -202457,7 +202494,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02745">
+            <rdf:Description rdf:about="#R_MAR02745">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.7"/>
@@ -202469,12 +202506,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02388m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02388m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02348m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02391m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02391m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -202483,7 +202520,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02748" sboTerm="SBO:0000185" id="MAR02748" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02748" sboTerm="SBO:0000185" id="R_MAR02748" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -202491,7 +202528,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02748">
+            <rdf:Description rdf:about="#R_MAR02748">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_2748"/>
@@ -202502,12 +202539,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01933m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01933m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01933c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01933c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -202531,7 +202568,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02750" sboTerm="SBO:0000176" id="MAR02750" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02750" sboTerm="SBO:0000176" id="R_MAR02750" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -202539,7 +202576,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02750">
+            <rdf:Description rdf:about="#R_MAR02750">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.7"/>
@@ -202550,12 +202587,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01933m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01933m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01934m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01934m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -202564,7 +202601,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02753" sboTerm="SBO:0000185" id="MAR02753" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02753" sboTerm="SBO:0000185" id="R_MAR02753" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -202572,7 +202609,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02753">
+            <rdf:Description rdf:about="#R_MAR02753">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/HMR_2753"/>
@@ -202584,12 +202621,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01774m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01774m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01774c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01774c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -202613,7 +202650,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02754" sboTerm="SBO:0000176" id="MAR02754" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02754" sboTerm="SBO:0000176" id="R_MAR02754" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -202621,7 +202658,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02754">
+            <rdf:Description rdf:about="#R_MAR02754">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.7"/>
@@ -202633,12 +202670,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01774m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01774m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01697m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01697m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -202647,7 +202684,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02757" sboTerm="SBO:0000185" id="MAR02757" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02757" sboTerm="SBO:0000185" id="R_MAR02757" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -202655,7 +202692,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02757">
+            <rdf:Description rdf:about="#R_MAR02757">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/HMR_2757"/>
@@ -202667,12 +202704,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01363m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01363m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01363c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01363c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -202696,7 +202733,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02758" sboTerm="SBO:0000176" id="MAR02758" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02758" sboTerm="SBO:0000176" id="R_MAR02758" name="palmitoyl-CoA:L-carnitine O-palmitoyltransferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -202704,7 +202741,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02758">
+            <rdf:Description rdf:about="#R_MAR02758">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.7"/>
@@ -202717,12 +202754,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01363m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01363m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01364m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01364m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -202731,7 +202768,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02760" sboTerm="SBO:0000185" id="MAR02760" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02760" sboTerm="SBO:0000185" id="R_MAR02760" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -202739,7 +202776,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02760">
+            <rdf:Description rdf:about="#R_MAR02760">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/HMR_2760"/>
@@ -202751,12 +202788,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02636m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02636m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02348m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02636c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02636c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -202780,7 +202817,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02761" sboTerm="SBO:0000176" id="MAR02761" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02761" sboTerm="SBO:0000176" id="R_MAR02761" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -202788,7 +202825,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02761">
+            <rdf:Description rdf:about="#R_MAR02761">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.7"/>
@@ -202800,12 +202837,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00119m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00119m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02636m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02636m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -202814,7 +202851,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02764" sboTerm="SBO:0000185" id="MAR02764" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02764" sboTerm="SBO:0000185" id="R_MAR02764" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -202822,7 +202859,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02764">
+            <rdf:Description rdf:about="#R_MAR02764">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_2764"/>
@@ -202833,12 +202870,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00092c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00092c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00092m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00092m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -202862,7 +202899,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02766" sboTerm="SBO:0000176" id="MAR02766" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02766" sboTerm="SBO:0000176" id="R_MAR02766" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -202870,7 +202907,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02766">
+            <rdf:Description rdf:about="#R_MAR02766">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.7"/>
@@ -202881,12 +202918,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00093m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00093m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00092m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00092m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -202895,7 +202932,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02769" sboTerm="SBO:0000185" id="MAR02769" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02769" sboTerm="SBO:0000185" id="R_MAR02769" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -202903,7 +202940,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02769">
+            <rdf:Description rdf:about="#R_MAR02769">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/HMR_2769"/>
@@ -202915,12 +202952,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01770m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01770m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01770c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01770c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -202944,7 +202981,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02770" sboTerm="SBO:0000176" id="MAR02770" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02770" sboTerm="SBO:0000176" id="R_MAR02770" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -202952,7 +202989,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02770">
+            <rdf:Description rdf:about="#R_MAR02770">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.7"/>
@@ -202964,12 +203001,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00009m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00009m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01770m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01770m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -202978,7 +203015,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02772" sboTerm="SBO:0000185" id="MAR02772" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02772" sboTerm="SBO:0000185" id="R_MAR02772" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -202986,7 +203023,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02772">
+            <rdf:Description rdf:about="#R_MAR02772">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_2772"/>
@@ -202997,12 +203034,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00022c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00022c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00022m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00022m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -203026,7 +203063,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02773" sboTerm="SBO:0000176" id="MAR02773" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02773" sboTerm="SBO:0000176" id="R_MAR02773" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -203034,7 +203071,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02773">
+            <rdf:Description rdf:about="#R_MAR02773">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.7"/>
@@ -203045,13 +203082,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00023m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00023m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00022m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00022m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -203060,7 +203097,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02775" sboTerm="SBO:0000185" id="MAR02775" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02775" sboTerm="SBO:0000185" id="R_MAR02775" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -203068,7 +203105,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02775">
+            <rdf:Description rdf:about="#R_MAR02775">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_2775"/>
@@ -203079,12 +203116,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00263c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00263c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00263m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00263m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -203108,7 +203145,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02776" sboTerm="SBO:0000176" id="MAR02776" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02776" sboTerm="SBO:0000176" id="R_MAR02776" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -203116,7 +203153,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02776">
+            <rdf:Description rdf:about="#R_MAR02776">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.7"/>
@@ -203127,12 +203164,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00264m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00264m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00263m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00263m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -203141,7 +203178,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03519" sboTerm="SBO:0000176" id="MAR03519" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03519" sboTerm="SBO:0000176" id="R_MAR03519" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -203149,7 +203186,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03519">
+            <rdf:Description rdf:about="#R_MAR03519">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/C110CPT2m"/>
@@ -203161,15 +203198,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00933m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00933m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00950m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00950m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03520" sboTerm="SBO:0000185" id="MAR03520" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03520" sboTerm="SBO:0000185" id="R_MAR03520" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -203177,7 +203214,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03520">
+            <rdf:Description rdf:about="#R_MAR03520">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/DNADtn"/>
@@ -203189,15 +203226,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00950c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00950c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00950m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00950m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08417" sboTerm="SBO:0000176" id="MAR08417" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08417" sboTerm="SBO:0000176" id="R_MAR08417" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -203205,7 +203242,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08417">
+            <rdf:Description rdf:about="#R_MAR08417">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR97521"/>
@@ -203216,15 +203253,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00563m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00563m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00577m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00577m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08418" sboTerm="SBO:0000185" id="MAR08418" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08418" sboTerm="SBO:0000185" id="R_MAR08418" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -203232,7 +203269,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08418">
+            <rdf:Description rdf:about="#R_MAR08418">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/C110CPT2m"/>
@@ -203244,15 +203281,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00577c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00577c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00577m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00577m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03027" sboTerm="SBO:0000185" id="MAR03027" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03027" sboTerm="SBO:0000185" id="R_MAR03027" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -203261,7 +203298,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03027">
+            <rdf:Description rdf:about="#R_MAR03027">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105420"/>
@@ -203272,15 +203309,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02443x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02443x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02348x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02443c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02443c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03028" sboTerm="SBO:0000176" id="MAR03028" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03028" sboTerm="SBO:0000176" id="R_MAR03028" name="palmitoyl-CoA:L-carnitine O-palmitoyltransferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -203289,7 +203326,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03028">
+            <rdf:Description rdf:about="#R_MAR03028">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.21"/>
@@ -203303,18 +203340,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02443x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02443x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02348x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02444x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02444x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="whd"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03029" sboTerm="SBO:0000185" id="MAR03029" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03029" sboTerm="SBO:0000185" id="R_MAR03029" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -203323,7 +203360,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03029">
+            <rdf:Description rdf:about="#R_MAR03029">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CRNCARtp"/>
@@ -203335,18 +203372,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02634x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02634x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02348x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02634c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02634c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CRAT"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03030" sboTerm="SBO:0000176" id="MAR03030" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03030" sboTerm="SBO:0000176" id="R_MAR03030" name="Acetyl-CoA:carnitine O-acetyltransferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -203355,7 +203392,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03030">
+            <rdf:Description rdf:about="#R_MAR03030">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.7"/>
@@ -203370,18 +203407,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02634x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02634x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CRAT"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03033" sboTerm="SBO:0000185" id="MAR03033" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03033" sboTerm="SBO:0000185" id="R_MAR03033" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -203390,7 +203427,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03033">
+            <rdf:Description rdf:about="#R_MAR03033">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105416"/>
@@ -203402,12 +203439,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02409x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02409x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02348x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02409c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02409c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -203416,7 +203453,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03034" sboTerm="SBO:0000176" id="MAR03034" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03034" sboTerm="SBO:0000176" id="R_MAR03034" name="Octanoyl-CoA:L-carnitine O-octanoyltransferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -203425,7 +203462,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03034">
+            <rdf:Description rdf:about="#R_MAR03034">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.137"/>
@@ -203439,18 +203476,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02409x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02409x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02348x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02644x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02644x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CROT"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03035" sboTerm="SBO:0000185" id="MAR03035" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03035" sboTerm="SBO:0000185" id="R_MAR03035" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -203458,7 +203495,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03035">
+            <rdf:Description rdf:about="#R_MAR03035">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CRNCAR3tp"/>
@@ -203471,12 +203508,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02657x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02657x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02348x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02657c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02657c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -203485,7 +203522,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03037" sboTerm="SBO:0000176" id="MAR03037" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03037" sboTerm="SBO:0000176" id="R_MAR03037" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -203494,7 +203531,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03037">
+            <rdf:Description rdf:about="#R_MAR03037">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.137"/>
@@ -203508,18 +203545,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02657x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02657x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02348x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02774x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02774x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CRAT"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02778" sboTerm="SBO:0000185" id="MAR02778" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02778" sboTerm="SBO:0000185" id="R_MAR02778" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -203528,7 +203565,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02778">
+            <rdf:Description rdf:about="#R_MAR02778">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR96898"/>
@@ -203540,18 +203577,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02634r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02634r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02348r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02634c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02634c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Orct"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02780" sboTerm="SBO:0000176" id="MAR02780" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02780" sboTerm="SBO:0000176" id="R_MAR02780" name="Acetyl-CoA:carnitine O-acetyltransferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -203560,7 +203597,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02780">
+            <rdf:Description rdf:about="#R_MAR02780">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.7"/>
@@ -203574,18 +203611,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02634r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02634r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CRAT"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02783" sboTerm="SBO:0000185" id="MAR02783" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02783" sboTerm="SBO:0000185" id="R_MAR02783" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -203594,7 +203631,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02783">
+            <rdf:Description rdf:about="#R_MAR02783">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105420"/>
@@ -203606,12 +203643,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02443r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02443r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02348r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02443c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02443c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -203620,7 +203657,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02785" sboTerm="SBO:0000176" id="MAR02785" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02785" sboTerm="SBO:0000176" id="R_MAR02785" name="palmitoyl-CoA:L-carnitine O-palmitoyltransferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -203629,7 +203666,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02785">
+            <rdf:Description rdf:about="#R_MAR02785">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.7"/>
@@ -203643,18 +203680,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02443r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02443r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02348r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02444r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02444r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CRAT"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02787" sboTerm="SBO:0000185" id="MAR02787" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02787" sboTerm="SBO:0000185" id="R_MAR02787" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -203662,7 +203699,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02787">
+            <rdf:Description rdf:about="#R_MAR02787">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_2787"/>
@@ -203673,18 +203710,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01729r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01729r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01729c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01729c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Orct"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02788" sboTerm="SBO:0000176" id="MAR02788" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02788" sboTerm="SBO:0000176" id="R_MAR02788" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -203692,7 +203729,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02788">
+            <rdf:Description rdf:about="#R_MAR02788">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.7"/>
@@ -203703,18 +203740,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01729r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01729r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02345r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02345r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CRAT"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02789" sboTerm="SBO:0000185" id="MAR02789" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02789" sboTerm="SBO:0000185" id="R_MAR02789" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -203722,7 +203759,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02789">
+            <rdf:Description rdf:about="#R_MAR02789">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_2789"/>
@@ -203733,18 +203770,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03049r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03049r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02348r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03049c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03049c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Orct"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02790" sboTerm="SBO:0000176" id="MAR02790" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02790" sboTerm="SBO:0000176" id="R_MAR02790" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -203752,7 +203789,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02790">
+            <rdf:Description rdf:about="#R_MAR02790">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.7"/>
@@ -203763,18 +203800,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03049r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03049r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02348r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03050r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03050r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CRAT"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02791" sboTerm="SBO:0000185" id="MAR02791" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02791" sboTerm="SBO:0000185" id="R_MAR02791" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -203782,7 +203819,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02791">
+            <rdf:Description rdf:about="#R_MAR02791">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_2791"/>
@@ -203793,18 +203830,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02973r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02973r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02348r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02973c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02973c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Orct"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02792" sboTerm="SBO:0000176" id="MAR02792" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02792" sboTerm="SBO:0000176" id="R_MAR02792" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -203812,7 +203849,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02792">
+            <rdf:Description rdf:about="#R_MAR02792">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.7"/>
@@ -203823,18 +203860,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02973r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02973r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02348r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02495r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02495r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CRAT"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02793" sboTerm="SBO:0000185" id="MAR02793" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02793" sboTerm="SBO:0000185" id="R_MAR02793" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -203842,7 +203879,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02793">
+            <rdf:Description rdf:about="#R_MAR02793">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_2793"/>
@@ -203853,18 +203890,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02974r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02974r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02348r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02974c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02974c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Orct"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02794" sboTerm="SBO:0000176" id="MAR02794" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02794" sboTerm="SBO:0000176" id="R_MAR02794" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -203872,7 +203909,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02794">
+            <rdf:Description rdf:about="#R_MAR02794">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.7"/>
@@ -203883,18 +203920,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00129r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00129r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02974r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02974r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CRAT"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02795" sboTerm="SBO:0000185" id="MAR02795" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02795" sboTerm="SBO:0000185" id="R_MAR02795" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -203902,7 +203939,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02795">
+            <rdf:Description rdf:about="#R_MAR02795">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_2795"/>
@@ -203913,18 +203950,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02975r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02975r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02348r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02975c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02975c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Orct"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02796" sboTerm="SBO:0000176" id="MAR02796" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02796" sboTerm="SBO:0000176" id="R_MAR02796" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -203932,7 +203969,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02796">
+            <rdf:Description rdf:about="#R_MAR02796">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.7"/>
@@ -203943,18 +203980,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00118r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00118r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02975r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02975r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CRAT"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02797" sboTerm="SBO:0000185" id="MAR02797" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02797" sboTerm="SBO:0000185" id="R_MAR02797" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -203962,7 +203999,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02797">
+            <rdf:Description rdf:about="#R_MAR02797">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_2797"/>
@@ -203973,18 +204010,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02976r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02976r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02348r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02976c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02976c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Orct"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02798" sboTerm="SBO:0000176" id="MAR02798" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02798" sboTerm="SBO:0000176" id="R_MAR02798" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -203992,7 +204029,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02798">
+            <rdf:Description rdf:about="#R_MAR02798">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.7"/>
@@ -204003,18 +204040,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01141r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01141r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02976r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02976r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CRAT"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02799" sboTerm="SBO:0000185" id="MAR02799" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02799" sboTerm="SBO:0000185" id="R_MAR02799" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -204022,7 +204059,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02799">
+            <rdf:Description rdf:about="#R_MAR02799">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_2799"/>
@@ -204033,18 +204070,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02688r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02688r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02348r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02688c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02688c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Orct"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02800" sboTerm="SBO:0000176" id="MAR02800" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02800" sboTerm="SBO:0000176" id="R_MAR02800" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -204052,7 +204089,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02800">
+            <rdf:Description rdf:about="#R_MAR02800">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.7"/>
@@ -204063,18 +204100,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02688r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02688r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02348r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02689r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02689r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CRAT"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02801" sboTerm="SBO:0000185" id="MAR02801" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02801" sboTerm="SBO:0000185" id="R_MAR02801" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -204083,7 +204120,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02801">
+            <rdf:Description rdf:about="#R_MAR02801">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105417"/>
@@ -204095,18 +204132,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02411r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02411r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02348r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02411c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02411c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Orct"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02803" sboTerm="SBO:0000176" id="MAR02803" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02803" sboTerm="SBO:0000176" id="R_MAR02803" name="palmitoyl-CoA:L-carnitine O-palmitoyltransferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -204115,7 +204152,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02803">
+            <rdf:Description rdf:about="#R_MAR02803">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.7"/>
@@ -204129,18 +204166,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02411r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02411r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02348r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02678r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02678r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CRAT"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02805" sboTerm="SBO:0000185" id="MAR02805" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02805" sboTerm="SBO:0000185" id="R_MAR02805" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -204148,7 +204185,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02805">
+            <rdf:Description rdf:about="#R_MAR02805">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_2805"/>
@@ -204159,18 +204196,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02117r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02117r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02117c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02117c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Orct"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02806" sboTerm="SBO:0000176" id="MAR02806" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02806" sboTerm="SBO:0000176" id="R_MAR02806" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -204178,7 +204215,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02806">
+            <rdf:Description rdf:about="#R_MAR02806">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.7"/>
@@ -204189,18 +204226,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01191r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01191r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02117r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02117r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CRAT"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02807" sboTerm="SBO:0000185" id="MAR02807" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02807" sboTerm="SBO:0000185" id="R_MAR02807" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -204209,7 +204246,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02807">
+            <rdf:Description rdf:about="#R_MAR02807">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105418"/>
@@ -204221,18 +204258,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02676r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02676r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02348r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02676c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02676c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Orct"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02809" sboTerm="SBO:0000176" id="MAR02809" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02809" sboTerm="SBO:0000176" id="R_MAR02809" name="palmitoyl-CoA:L-carnitine O-palmitoyltransferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -204241,7 +204278,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02809">
+            <rdf:Description rdf:about="#R_MAR02809">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.7"/>
@@ -204255,18 +204292,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02676r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02676r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02348r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02677r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02677r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CRAT"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02811" sboTerm="SBO:0000185" id="MAR02811" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02811" sboTerm="SBO:0000185" id="R_MAR02811" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -204274,7 +204311,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02811">
+            <rdf:Description rdf:about="#R_MAR02811">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_2811"/>
@@ -204285,18 +204322,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02100r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02100r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02100c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02100c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Orct"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02812" sboTerm="SBO:0000176" id="MAR02812" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02812" sboTerm="SBO:0000176" id="R_MAR02812" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -204304,7 +204341,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02812">
+            <rdf:Description rdf:about="#R_MAR02812">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.7"/>
@@ -204315,18 +204352,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02100r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02100r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02101r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02101r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CRAT"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02813" sboTerm="SBO:0000185" id="MAR02813" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02813" sboTerm="SBO:0000185" id="R_MAR02813" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -204334,7 +204371,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02813">
+            <rdf:Description rdf:about="#R_MAR02813">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_2813"/>
@@ -204345,18 +204382,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02102r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02102r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02102c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02102c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Orct"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02814" sboTerm="SBO:0000176" id="MAR02814" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02814" sboTerm="SBO:0000176" id="R_MAR02814" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -204364,7 +204401,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02814">
+            <rdf:Description rdf:about="#R_MAR02814">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.7"/>
@@ -204375,18 +204412,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00004r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00004r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02102r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02102r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CRAT"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02815" sboTerm="SBO:0000185" id="MAR02815" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02815" sboTerm="SBO:0000185" id="R_MAR02815" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -204394,7 +204431,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02815">
+            <rdf:Description rdf:about="#R_MAR02815">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_2815"/>
@@ -204405,18 +204442,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02103r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02103r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02103c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02103c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Orct"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02816" sboTerm="SBO:0000176" id="MAR02816" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02816" sboTerm="SBO:0000176" id="R_MAR02816" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -204424,7 +204461,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02816">
+            <rdf:Description rdf:about="#R_MAR02816">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.7"/>
@@ -204435,18 +204472,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01237r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01237r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02103r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02103r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CRAT"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02817" sboTerm="SBO:0000185" id="MAR02817" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02817" sboTerm="SBO:0000185" id="R_MAR02817" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -204454,7 +204491,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02817">
+            <rdf:Description rdf:about="#R_MAR02817">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_2817"/>
@@ -204465,18 +204502,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02940r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02940r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02348r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02940c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02940c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Orct"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02819" sboTerm="SBO:0000176" id="MAR02819" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02819" sboTerm="SBO:0000176" id="R_MAR02819" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -204484,7 +204521,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02819">
+            <rdf:Description rdf:about="#R_MAR02819">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.7"/>
@@ -204495,18 +204532,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02940r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02940r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02348r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02941r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02941r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CRAT"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02821" sboTerm="SBO:0000185" id="MAR02821" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02821" sboTerm="SBO:0000185" id="R_MAR02821" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -204514,7 +204551,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02821">
+            <rdf:Description rdf:about="#R_MAR02821">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_2821"/>
@@ -204525,18 +204562,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02639r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02639r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02348r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02639c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02639c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Orct"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02822" sboTerm="SBO:0000176" id="MAR02822" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02822" sboTerm="SBO:0000176" id="R_MAR02822" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -204544,7 +204581,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02822">
+            <rdf:Description rdf:about="#R_MAR02822">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.7"/>
@@ -204555,18 +204592,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00020r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00020r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02639r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02639r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CRAT"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02823" sboTerm="SBO:0000185" id="MAR02823" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02823" sboTerm="SBO:0000185" id="R_MAR02823" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -204574,7 +204611,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02823">
+            <rdf:Description rdf:about="#R_MAR02823">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_2823"/>
@@ -204585,18 +204622,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02640r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02640r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02348r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02640c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02640c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Orct"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02824" sboTerm="SBO:0000176" id="MAR02824" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02824" sboTerm="SBO:0000176" id="R_MAR02824" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -204604,7 +204641,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02824">
+            <rdf:Description rdf:about="#R_MAR02824">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.7"/>
@@ -204615,18 +204652,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02640r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02640r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01586r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01586r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CRAT"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02825" sboTerm="SBO:0000185" id="MAR02825" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02825" sboTerm="SBO:0000185" id="R_MAR02825" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -204635,7 +204672,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02825">
+            <rdf:Description rdf:about="#R_MAR02825">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/tcdb/2.A.29.8.3"/>
@@ -204645,18 +204682,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02348r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02410c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02410c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02410r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02410r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Orct"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02827" sboTerm="SBO:0000176" id="MAR02827" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02827" sboTerm="SBO:0000176" id="R_MAR02827" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -204665,7 +204702,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02827">
+            <rdf:Description rdf:about="#R_MAR02827">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.7"/>
@@ -204676,18 +204713,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02410r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02410r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02348r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02647r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02647r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CRAT"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02829" sboTerm="SBO:0000185" id="MAR02829" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02829" sboTerm="SBO:0000185" id="R_MAR02829" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -204695,7 +204732,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02829">
+            <rdf:Description rdf:about="#R_MAR02829">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_2829"/>
@@ -204706,18 +204743,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00126c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00126c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00126r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00126r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Orct"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02830" sboTerm="SBO:0000176" id="MAR02830" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02830" sboTerm="SBO:0000176" id="R_MAR02830" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -204725,7 +204762,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02830">
+            <rdf:Description rdf:about="#R_MAR02830">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.7"/>
@@ -204736,18 +204773,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00126r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00126r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00127r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00127r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CRAT"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02831" sboTerm="SBO:0000185" id="MAR02831" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02831" sboTerm="SBO:0000185" id="R_MAR02831" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -204755,7 +204792,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02831">
+            <rdf:Description rdf:about="#R_MAR02831">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_2831"/>
@@ -204766,18 +204803,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02638r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02638r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02348r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02638c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02638c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Orct"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02832" sboTerm="SBO:0000176" id="MAR02832" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02832" sboTerm="SBO:0000176" id="R_MAR02832" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -204785,7 +204822,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02832">
+            <rdf:Description rdf:about="#R_MAR02832">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.7"/>
@@ -204796,18 +204833,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00116r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00116r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02638r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02638r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CRAT"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02833" sboTerm="SBO:0000185" id="MAR02833" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02833" sboTerm="SBO:0000185" id="R_MAR02833" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -204815,7 +204852,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02833">
+            <rdf:Description rdf:about="#R_MAR02833">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_2833"/>
@@ -204826,18 +204863,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00105c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00105c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00105r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00105r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Orct"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02834" sboTerm="SBO:0000176" id="MAR02834" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02834" sboTerm="SBO:0000176" id="R_MAR02834" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -204845,7 +204882,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02834">
+            <rdf:Description rdf:about="#R_MAR02834">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.7"/>
@@ -204856,18 +204893,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00105r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00105r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00106r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00106r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CRAT"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02835" sboTerm="SBO:0000185" id="MAR02835" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02835" sboTerm="SBO:0000185" id="R_MAR02835" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -204875,7 +204912,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02835">
+            <rdf:Description rdf:about="#R_MAR02835">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_2835"/>
@@ -204886,18 +204923,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02611r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02611r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02348r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02611c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02611c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Orct"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02836" sboTerm="SBO:0000176" id="MAR02836" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02836" sboTerm="SBO:0000176" id="R_MAR02836" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -204905,7 +204942,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02836">
+            <rdf:Description rdf:about="#R_MAR02836">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.7"/>
@@ -204916,18 +204953,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02611r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02611r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02348r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02612r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02612r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CRAT"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02837" sboTerm="SBO:0000185" id="MAR02837" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02837" sboTerm="SBO:0000185" id="R_MAR02837" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -204935,7 +204972,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02837">
+            <rdf:Description rdf:about="#R_MAR02837">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_2837"/>
@@ -204946,18 +204983,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01772r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01772r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01772c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01772c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Orct"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02838" sboTerm="SBO:0000176" id="MAR02838" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02838" sboTerm="SBO:0000176" id="R_MAR02838" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -204965,7 +205002,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02838">
+            <rdf:Description rdf:about="#R_MAR02838">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.7"/>
@@ -204976,18 +205013,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01772r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01772r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01773r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01773r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CRAT"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02839" sboTerm="SBO:0000185" id="MAR02839" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02839" sboTerm="SBO:0000185" id="R_MAR02839" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -204995,7 +205032,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02839">
+            <rdf:Description rdf:about="#R_MAR02839">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_2839"/>
@@ -205006,18 +205043,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01777r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01777r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01777c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01777c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Orct"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02840" sboTerm="SBO:0000176" id="MAR02840" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02840" sboTerm="SBO:0000176" id="R_MAR02840" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -205025,7 +205062,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02840">
+            <rdf:Description rdf:about="#R_MAR02840">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.7"/>
@@ -205036,18 +205073,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00007r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00007r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01777r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01777r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CRAT"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02841" sboTerm="SBO:0000185" id="MAR02841" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02841" sboTerm="SBO:0000185" id="R_MAR02841" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -205055,7 +205092,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02841">
+            <rdf:Description rdf:about="#R_MAR02841">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_2841"/>
@@ -205066,18 +205103,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01775r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01775r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01775c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01775c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Orct"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02842" sboTerm="SBO:0000176" id="MAR02842" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02842" sboTerm="SBO:0000176" id="R_MAR02842" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -205085,7 +205122,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02842">
+            <rdf:Description rdf:about="#R_MAR02842">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.7"/>
@@ -205096,18 +205133,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01236r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01236r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01775r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01775r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CRAT"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02843" sboTerm="SBO:0000185" id="MAR02843" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02843" sboTerm="SBO:0000185" id="R_MAR02843" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -205115,7 +205152,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02843">
+            <rdf:Description rdf:about="#R_MAR02843">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_2843"/>
@@ -205126,18 +205163,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01776r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01776r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01776c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01776c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Orct"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02844" sboTerm="SBO:0000176" id="MAR02844" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02844" sboTerm="SBO:0000176" id="R_MAR02844" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -205145,7 +205182,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02844">
+            <rdf:Description rdf:about="#R_MAR02844">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.7"/>
@@ -205156,18 +205193,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00018r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00018r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01776r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01776r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CRAT"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02845" sboTerm="SBO:0000185" id="MAR02845" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02845" sboTerm="SBO:0000185" id="R_MAR02845" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -205175,7 +205212,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02845">
+            <rdf:Description rdf:about="#R_MAR02845">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_2845"/>
@@ -205186,18 +205223,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00122c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00122c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00122r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00122r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Orct"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02846" sboTerm="SBO:0000176" id="MAR02846" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02846" sboTerm="SBO:0000176" id="R_MAR02846" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -205205,7 +205242,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02846">
+            <rdf:Description rdf:about="#R_MAR02846">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.7"/>
@@ -205216,18 +205253,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00123r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00123r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00122r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00122r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CRAT"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02847" sboTerm="SBO:0000185" id="MAR02847" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02847" sboTerm="SBO:0000185" id="R_MAR02847" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -205235,7 +205272,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02847">
+            <rdf:Description rdf:about="#R_MAR02847">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_2847"/>
@@ -205246,18 +205283,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00100c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00100c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00100r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00100r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Orct"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02848" sboTerm="SBO:0000176" id="MAR02848" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02848" sboTerm="SBO:0000176" id="R_MAR02848" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -205265,7 +205302,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02848">
+            <rdf:Description rdf:about="#R_MAR02848">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.7"/>
@@ -205276,18 +205313,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00101r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00101r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00100r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00100r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CRAT"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02849" sboTerm="SBO:0000185" id="MAR02849" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02849" sboTerm="SBO:0000185" id="R_MAR02849" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -205295,7 +205332,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02849">
+            <rdf:Description rdf:about="#R_MAR02849">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_2849"/>
@@ -205306,18 +205343,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02051r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02051r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02051c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02051c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Orct"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02850" sboTerm="SBO:0000176" id="MAR02850" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02850" sboTerm="SBO:0000176" id="R_MAR02850" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -205325,7 +205362,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02850">
+            <rdf:Description rdf:about="#R_MAR02850">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.7"/>
@@ -205336,18 +205373,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02051r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02051r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02052r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02052r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CRAT"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02851" sboTerm="SBO:0000185" id="MAR02851" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02851" sboTerm="SBO:0000185" id="R_MAR02851" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -205355,7 +205392,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02851">
+            <rdf:Description rdf:about="#R_MAR02851">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_2851"/>
@@ -205366,18 +205403,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01724r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01724r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01724c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01724c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Orct"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02852" sboTerm="SBO:0000176" id="MAR02852" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02852" sboTerm="SBO:0000176" id="R_MAR02852" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -205385,7 +205422,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02852">
+            <rdf:Description rdf:about="#R_MAR02852">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.7"/>
@@ -205396,18 +205433,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01724r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01724r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01725r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01725r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CRAT"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02853" sboTerm="SBO:0000185" id="MAR02853" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02853" sboTerm="SBO:0000185" id="R_MAR02853" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -205415,7 +205452,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02853">
+            <rdf:Description rdf:about="#R_MAR02853">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_2853"/>
@@ -205426,18 +205463,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01727r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01727r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01727c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01727c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Orct"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02854" sboTerm="SBO:0000176" id="MAR02854" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02854" sboTerm="SBO:0000176" id="R_MAR02854" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -205445,7 +205482,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02854">
+            <rdf:Description rdf:about="#R_MAR02854">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.7"/>
@@ -205456,18 +205493,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00016r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00016r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01727r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01727r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CRAT"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02855" sboTerm="SBO:0000185" id="MAR02855" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02855" sboTerm="SBO:0000185" id="R_MAR02855" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -205475,7 +205512,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02855">
+            <rdf:Description rdf:about="#R_MAR02855">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_2855"/>
@@ -205486,18 +205523,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01726r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01726r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01726c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01726c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Orct"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02856" sboTerm="SBO:0000176" id="MAR02856" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02856" sboTerm="SBO:0000176" id="R_MAR02856" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -205505,7 +205542,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02856">
+            <rdf:Description rdf:about="#R_MAR02856">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.7"/>
@@ -205516,18 +205553,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00006r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00006r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01726r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01726r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CRAT"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02857" sboTerm="SBO:0000185" id="MAR02857" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02857" sboTerm="SBO:0000185" id="R_MAR02857" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -205535,7 +205572,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02857">
+            <rdf:Description rdf:about="#R_MAR02857">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_2857"/>
@@ -205546,18 +205583,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02637r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02637r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02348r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02637c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02637c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Orct"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02859" sboTerm="SBO:0000176" id="MAR02859" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02859" sboTerm="SBO:0000176" id="R_MAR02859" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -205565,7 +205602,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02859">
+            <rdf:Description rdf:about="#R_MAR02859">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.7"/>
@@ -205576,18 +205613,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02637r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02637r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02348r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02390r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02390r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CRAT"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02861" sboTerm="SBO:0000185" id="MAR02861" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02861" sboTerm="SBO:0000185" id="R_MAR02861" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -205595,7 +205632,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02861">
+            <rdf:Description rdf:about="#R_MAR02861">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_2861"/>
@@ -205606,18 +205643,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00107c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00107c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00107r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00107r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Orct"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02862" sboTerm="SBO:0000176" id="MAR02862" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02862" sboTerm="SBO:0000176" id="R_MAR02862" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -205625,7 +205662,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02862">
+            <rdf:Description rdf:about="#R_MAR02862">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.7"/>
@@ -205636,18 +205673,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00108r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00108r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00107r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00107r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CRAT"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02863" sboTerm="SBO:0000185" id="MAR02863" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02863" sboTerm="SBO:0000185" id="R_MAR02863" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -205655,7 +205692,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02863">
+            <rdf:Description rdf:about="#R_MAR02863">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_2863"/>
@@ -205666,18 +205703,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00124c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00124c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00124r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00124r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Orct"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02864" sboTerm="SBO:0000176" id="MAR02864" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02864" sboTerm="SBO:0000176" id="R_MAR02864" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -205685,7 +205722,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02864">
+            <rdf:Description rdf:about="#R_MAR02864">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.7"/>
@@ -205696,18 +205733,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00125r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00125r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00124r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00124r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CRAT"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02865" sboTerm="SBO:0000185" id="MAR02865" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02865" sboTerm="SBO:0000185" id="R_MAR02865" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -205715,7 +205752,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02865">
+            <rdf:Description rdf:about="#R_MAR02865">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_2865"/>
@@ -205726,18 +205763,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00102c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00102c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00102r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00102r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Orct"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02866" sboTerm="SBO:0000176" id="MAR02866" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02866" sboTerm="SBO:0000176" id="R_MAR02866" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -205745,7 +205782,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02866">
+            <rdf:Description rdf:about="#R_MAR02866">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.7"/>
@@ -205756,18 +205793,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00103r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00103r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00102r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00102r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CRAT"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02867" sboTerm="SBO:0000185" id="MAR02867" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02867" sboTerm="SBO:0000185" id="R_MAR02867" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -205775,7 +205812,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02867">
+            <rdf:Description rdf:about="#R_MAR02867">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_2867"/>
@@ -205786,18 +205823,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00120c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00120c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00120r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00120r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Orct"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02868" sboTerm="SBO:0000176" id="MAR02868" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02868" sboTerm="SBO:0000176" id="R_MAR02868" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -205805,7 +205842,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02868">
+            <rdf:Description rdf:about="#R_MAR02868">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.7"/>
@@ -205816,18 +205853,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00121r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00121r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00120r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00120r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CRAT"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02869" sboTerm="SBO:0000185" id="MAR02869" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02869" sboTerm="SBO:0000185" id="R_MAR02869" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -205835,7 +205872,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02869">
+            <rdf:Description rdf:about="#R_MAR02869">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_2869"/>
@@ -205846,18 +205883,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01723r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01723r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01723c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01723c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Orct"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02870" sboTerm="SBO:0000176" id="MAR02870" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02870" sboTerm="SBO:0000176" id="R_MAR02870" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -205865,7 +205902,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02870">
+            <rdf:Description rdf:about="#R_MAR02870">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.7"/>
@@ -205876,18 +205913,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00095r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00095r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01723r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01723r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CRAT"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02871" sboTerm="SBO:0000185" id="MAR02871" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02871" sboTerm="SBO:0000185" id="R_MAR02871" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -205895,7 +205932,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02871">
+            <rdf:Description rdf:about="#R_MAR02871">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_2871"/>
@@ -205906,18 +205943,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00011c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00011c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00011r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00011r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Orct"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02872" sboTerm="SBO:0000176" id="MAR02872" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02872" sboTerm="SBO:0000176" id="R_MAR02872" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -205925,7 +205962,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02872">
+            <rdf:Description rdf:about="#R_MAR02872">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.7"/>
@@ -205936,18 +205973,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00012r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00012r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00011r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00011r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CRAT"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02873" sboTerm="SBO:0000185" id="MAR02873" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02873" sboTerm="SBO:0000185" id="R_MAR02873" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -205955,7 +205992,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02873">
+            <rdf:Description rdf:about="#R_MAR02873">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_2873"/>
@@ -205966,18 +206003,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00342c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00342c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00342r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00342r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Orct"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02874" sboTerm="SBO:0000176" id="MAR02874" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02874" sboTerm="SBO:0000176" id="R_MAR02874" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -205985,7 +206022,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02874">
+            <rdf:Description rdf:about="#R_MAR02874">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.7"/>
@@ -205996,18 +206033,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00343r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00343r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00342r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00342r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CRAT"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02875" sboTerm="SBO:0000185" id="MAR02875" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02875" sboTerm="SBO:0000185" id="R_MAR02875" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -206015,7 +206052,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02875">
+            <rdf:Description rdf:about="#R_MAR02875">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_2875"/>
@@ -206026,18 +206063,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00261c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00261c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00261r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00261r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Orct"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02876" sboTerm="SBO:0000176" id="MAR02876" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02876" sboTerm="SBO:0000176" id="R_MAR02876" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -206045,7 +206082,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02876">
+            <rdf:Description rdf:about="#R_MAR02876">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.7"/>
@@ -206056,18 +206093,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00262r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00262r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00261r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00261r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CRAT"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02878" sboTerm="SBO:0000185" id="MAR02878" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02878" sboTerm="SBO:0000185" id="R_MAR02878" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -206075,7 +206112,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02878">
+            <rdf:Description rdf:about="#R_MAR02878">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_2878"/>
@@ -206086,18 +206123,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00316c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00316c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00316r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00316r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Orct"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02879" sboTerm="SBO:0000176" id="MAR02879" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02879" sboTerm="SBO:0000176" id="R_MAR02879" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -206105,7 +206142,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02879">
+            <rdf:Description rdf:about="#R_MAR02879">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.7"/>
@@ -206116,18 +206153,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00317r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00317r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00316r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00316r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CRAT"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02880" sboTerm="SBO:0000185" id="MAR02880" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02880" sboTerm="SBO:0000185" id="R_MAR02880" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -206135,7 +206172,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02880">
+            <rdf:Description rdf:about="#R_MAR02880">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105419"/>
@@ -206147,18 +206184,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02388r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02388r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02348r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02388c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02388c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Orct"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02882" sboTerm="SBO:0000176" id="MAR02882" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02882" sboTerm="SBO:0000176" id="R_MAR02882" name="palmitoyl-CoA:L-carnitine O-palmitoyltransferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -206166,7 +206203,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02882">
+            <rdf:Description rdf:about="#R_MAR02882">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.7"/>
@@ -206180,18 +206217,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02388r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02388r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02348r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02391r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02391r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CRAT"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02884" sboTerm="SBO:0000185" id="MAR02884" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02884" sboTerm="SBO:0000185" id="R_MAR02884" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -206199,7 +206236,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02884">
+            <rdf:Description rdf:about="#R_MAR02884">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_2884"/>
@@ -206210,18 +206247,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01933r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01933r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01933c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01933c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Orct"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02886" sboTerm="SBO:0000176" id="MAR02886" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02886" sboTerm="SBO:0000176" id="R_MAR02886" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -206229,7 +206266,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02886">
+            <rdf:Description rdf:about="#R_MAR02886">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.7"/>
@@ -206240,18 +206277,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01933r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01933r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01934r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01934r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CRAT"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02888" sboTerm="SBO:0000185" id="MAR02888" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02888" sboTerm="SBO:0000185" id="R_MAR02888" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -206259,7 +206296,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02888">
+            <rdf:Description rdf:about="#R_MAR02888">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_2888"/>
@@ -206270,18 +206307,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01774r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01774r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01774c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01774c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Orct"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02890" sboTerm="SBO:0000176" id="MAR02890" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02890" sboTerm="SBO:0000176" id="R_MAR02890" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -206289,7 +206326,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02890">
+            <rdf:Description rdf:about="#R_MAR02890">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.7"/>
@@ -206300,18 +206337,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01774r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01774r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01697r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01697r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CRAT"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02892" sboTerm="SBO:0000185" id="MAR02892" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02892" sboTerm="SBO:0000185" id="R_MAR02892" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -206319,7 +206356,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02892">
+            <rdf:Description rdf:about="#R_MAR02892">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105421"/>
@@ -206331,18 +206368,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01363r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01363r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01363c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01363c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Orct"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02894" sboTerm="SBO:0000176" id="MAR02894" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02894" sboTerm="SBO:0000176" id="R_MAR02894" name="palmitoyl-CoA:L-carnitine O-palmitoyltransferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -206350,7 +206387,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02894">
+            <rdf:Description rdf:about="#R_MAR02894">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.7"/>
@@ -206364,18 +206401,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01363r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01363r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01364r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01364r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CRAT"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02896" sboTerm="SBO:0000185" id="MAR02896" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02896" sboTerm="SBO:0000185" id="R_MAR02896" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -206383,7 +206420,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02896">
+            <rdf:Description rdf:about="#R_MAR02896">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_2896"/>
@@ -206394,18 +206431,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02636r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02636r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02348r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02636c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02636c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Orct"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02897" sboTerm="SBO:0000176" id="MAR02897" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02897" sboTerm="SBO:0000176" id="R_MAR02897" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -206413,7 +206450,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02897">
+            <rdf:Description rdf:about="#R_MAR02897">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.7"/>
@@ -206424,18 +206461,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00119r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00119r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02636r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02636r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CRAT"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02898" sboTerm="SBO:0000185" id="MAR02898" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02898" sboTerm="SBO:0000185" id="R_MAR02898" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -206443,7 +206480,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02898">
+            <rdf:Description rdf:about="#R_MAR02898">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_2898"/>
@@ -206454,18 +206491,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00092c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00092c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00092r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00092r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Orct"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02899" sboTerm="SBO:0000176" id="MAR02899" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02899" sboTerm="SBO:0000176" id="R_MAR02899" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -206473,7 +206510,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02899">
+            <rdf:Description rdf:about="#R_MAR02899">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.7"/>
@@ -206484,18 +206521,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00093r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00093r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00092r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00092r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CRAT"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02900" sboTerm="SBO:0000185" id="MAR02900" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02900" sboTerm="SBO:0000185" id="R_MAR02900" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -206503,7 +206540,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02900">
+            <rdf:Description rdf:about="#R_MAR02900">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_2900"/>
@@ -206514,18 +206551,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01770r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01770r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01770c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01770c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Orct"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02901" sboTerm="SBO:0000176" id="MAR02901" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02901" sboTerm="SBO:0000176" id="R_MAR02901" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -206533,7 +206570,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02901">
+            <rdf:Description rdf:about="#R_MAR02901">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.7"/>
@@ -206544,18 +206581,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00009r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00009r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01770r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01770r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CRAT"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02902" sboTerm="SBO:0000185" id="MAR02902" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02902" sboTerm="SBO:0000185" id="R_MAR02902" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -206563,7 +206600,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02902">
+            <rdf:Description rdf:about="#R_MAR02902">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_2902"/>
@@ -206574,18 +206611,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00022c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00022c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00022r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00022r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Orct"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02903" sboTerm="SBO:0000176" id="MAR02903" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02903" sboTerm="SBO:0000176" id="R_MAR02903" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -206593,7 +206630,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02903">
+            <rdf:Description rdf:about="#R_MAR02903">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.7"/>
@@ -206604,19 +206641,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00023r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00023r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00022r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00022r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CRAT"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02904" sboTerm="SBO:0000185" id="MAR02904" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02904" sboTerm="SBO:0000185" id="R_MAR02904" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -206624,7 +206661,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02904">
+            <rdf:Description rdf:about="#R_MAR02904">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_2904"/>
@@ -206635,18 +206672,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00263c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00263c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00263r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00263r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Orct"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02905" sboTerm="SBO:0000176" id="MAR02905" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02905" sboTerm="SBO:0000176" id="R_MAR02905" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -206654,7 +206691,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02905">
+            <rdf:Description rdf:about="#R_MAR02905">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.7"/>
@@ -206665,18 +206702,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00264r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00264r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00263r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00263r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CRAT"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02906" sboTerm="SBO:0000176" id="MAR02906" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02906" sboTerm="SBO:0000176" id="R_MAR02906" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -206684,7 +206721,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02906">
+            <rdf:Description rdf:about="#R_MAR02906">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.21"/>
@@ -206695,18 +206732,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03046c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03047c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03047c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="whd"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02907" sboTerm="SBO:0000185" id="MAR02907" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02907" sboTerm="SBO:0000185" id="R_MAR02907" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -206714,7 +206751,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02907">
+            <rdf:Description rdf:about="#R_MAR02907">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_2907"/>
@@ -206725,18 +206762,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03046r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03046r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02348r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03046c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Orct"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02908" sboTerm="SBO:0000176" id="MAR02908" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02908" sboTerm="SBO:0000176" id="R_MAR02908" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -206744,7 +206781,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02908">
+            <rdf:Description rdf:about="#R_MAR02908">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.7"/>
@@ -206755,18 +206792,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03046r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03046r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02348r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03047r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03047r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CRAT"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02909" sboTerm="SBO:0000176" id="MAR02909" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02909" sboTerm="SBO:0000176" id="R_MAR02909" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -206774,7 +206811,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02909">
+            <rdf:Description rdf:about="#R_MAR02909">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.21"/>
@@ -206785,18 +206822,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02970c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02970c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02971c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02971c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="whd"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02910" sboTerm="SBO:0000185" id="MAR02910" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02910" sboTerm="SBO:0000185" id="R_MAR02910" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -206804,7 +206841,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02910">
+            <rdf:Description rdf:about="#R_MAR02910">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_2910"/>
@@ -206815,18 +206852,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02970r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02970r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02348r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02970c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02970c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Orct"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02911" sboTerm="SBO:0000176" id="MAR02911" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02911" sboTerm="SBO:0000176" id="R_MAR02911" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -206834,7 +206871,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02911">
+            <rdf:Description rdf:about="#R_MAR02911">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.7"/>
@@ -206845,18 +206882,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02970r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02970r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02348r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02971r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02971r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CRAT"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02912" sboTerm="SBO:0000176" id="MAR02912" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02912" sboTerm="SBO:0000176" id="R_MAR02912" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -206864,7 +206901,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02912">
+            <rdf:Description rdf:about="#R_MAR02912">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.21"/>
@@ -206875,18 +206912,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00025c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00025c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00024c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00024c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="whd"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02913" sboTerm="SBO:0000185" id="MAR02913" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02913" sboTerm="SBO:0000185" id="R_MAR02913" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -206894,7 +206931,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02913">
+            <rdf:Description rdf:about="#R_MAR02913">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_2913"/>
@@ -206905,18 +206942,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00024c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00024c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00024r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00024r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Orct"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02914" sboTerm="SBO:0000176" id="MAR02914" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02914" sboTerm="SBO:0000176" id="R_MAR02914" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -206924,7 +206961,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02914">
+            <rdf:Description rdf:about="#R_MAR02914">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.7"/>
@@ -206935,18 +206972,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00025r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00025r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00024r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00024r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CRAT"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02915" sboTerm="SBO:0000176" id="MAR02915" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02915" sboTerm="SBO:0000176" id="R_MAR02915" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -206954,7 +206991,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02915">
+            <rdf:Description rdf:about="#R_MAR02915">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.21"/>
@@ -206965,18 +207002,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02109c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02109c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02110c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02110c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="whd"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02916" sboTerm="SBO:0000185" id="MAR02916" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02916" sboTerm="SBO:0000185" id="R_MAR02916" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -206984,7 +207021,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02916">
+            <rdf:Description rdf:about="#R_MAR02916">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_2916"/>
@@ -206995,18 +207032,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02109r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02109r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02109c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02109c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Orct"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02917" sboTerm="SBO:0000176" id="MAR02917" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02917" sboTerm="SBO:0000176" id="R_MAR02917" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -207014,7 +207051,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02917">
+            <rdf:Description rdf:about="#R_MAR02917">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.7"/>
@@ -207025,18 +207062,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02109r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02109r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02110r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02110r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CRAT"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02918" sboTerm="SBO:0000176" id="MAR02918" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02918" sboTerm="SBO:0000176" id="R_MAR02918" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -207044,7 +207081,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02918">
+            <rdf:Description rdf:about="#R_MAR02918">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.21"/>
@@ -207055,18 +207092,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02111c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02111c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02112c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02112c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="whd"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02919" sboTerm="SBO:0000185" id="MAR02919" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02919" sboTerm="SBO:0000185" id="R_MAR02919" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -207074,7 +207111,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02919">
+            <rdf:Description rdf:about="#R_MAR02919">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_2919"/>
@@ -207085,18 +207122,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02111r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02111r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02111c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02111c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Orct"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02920" sboTerm="SBO:0000176" id="MAR02920" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02920" sboTerm="SBO:0000176" id="R_MAR02920" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -207104,7 +207141,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02920">
+            <rdf:Description rdf:about="#R_MAR02920">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.7"/>
@@ -207115,18 +207152,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02111r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02111r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02112r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02112r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CRAT"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02921" sboTerm="SBO:0000176" id="MAR02921" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02921" sboTerm="SBO:0000176" id="R_MAR02921" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -207134,7 +207171,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02921">
+            <rdf:Description rdf:about="#R_MAR02921">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.21"/>
@@ -207145,18 +207182,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00134c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00134c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00133c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00133c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="whd"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02922" sboTerm="SBO:0000185" id="MAR02922" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02922" sboTerm="SBO:0000185" id="R_MAR02922" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -207164,7 +207201,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02922">
+            <rdf:Description rdf:about="#R_MAR02922">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_2922"/>
@@ -207175,18 +207212,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00133c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00133c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00133r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00133r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Orct"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02923" sboTerm="SBO:0000176" id="MAR02923" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02923" sboTerm="SBO:0000176" id="R_MAR02923" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -207194,7 +207231,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02923">
+            <rdf:Description rdf:about="#R_MAR02923">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.7"/>
@@ -207205,18 +207242,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00134r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00134r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00133r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00133r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CRAT"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02924" sboTerm="SBO:0000176" id="MAR02924" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02924" sboTerm="SBO:0000176" id="R_MAR02924" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -207224,7 +207261,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02924">
+            <rdf:Description rdf:about="#R_MAR02924">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.21"/>
@@ -207235,18 +207272,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00131c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00131c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00130c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00130c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="whd"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02925" sboTerm="SBO:0000185" id="MAR02925" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02925" sboTerm="SBO:0000185" id="R_MAR02925" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -207254,7 +207291,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02925">
+            <rdf:Description rdf:about="#R_MAR02925">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_2925"/>
@@ -207265,18 +207302,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00130c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00130c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00130r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00130r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Orct"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02926" sboTerm="SBO:0000176" id="MAR02926" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02926" sboTerm="SBO:0000176" id="R_MAR02926" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -207284,7 +207321,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02926">
+            <rdf:Description rdf:about="#R_MAR02926">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.7"/>
@@ -207295,18 +207332,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00131r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00131r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00130r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00130r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CRAT"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02927" sboTerm="SBO:0000176" id="MAR02927" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02927" sboTerm="SBO:0000176" id="R_MAR02927" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -207314,7 +207351,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02927">
+            <rdf:Description rdf:about="#R_MAR02927">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.21"/>
@@ -207325,18 +207362,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00110c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00110c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00109c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00109c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="whd"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02928" sboTerm="SBO:0000185" id="MAR02928" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02928" sboTerm="SBO:0000185" id="R_MAR02928" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -207344,7 +207381,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02928">
+            <rdf:Description rdf:about="#R_MAR02928">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_2928"/>
@@ -207355,18 +207392,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00109c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00109c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00109r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00109r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Orct"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02929" sboTerm="SBO:0000176" id="MAR02929" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02929" sboTerm="SBO:0000176" id="R_MAR02929" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -207374,7 +207411,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02929">
+            <rdf:Description rdf:about="#R_MAR02929">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.7"/>
@@ -207385,18 +207422,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00110r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00110r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00109r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00109r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CRAT"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02930" sboTerm="SBO:0000176" id="MAR02930" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02930" sboTerm="SBO:0000176" id="R_MAR02930" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -207404,7 +207441,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02930">
+            <rdf:Description rdf:about="#R_MAR02930">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.21"/>
@@ -207415,18 +207452,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00113c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00113c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00112c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00112c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="whd"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02931" sboTerm="SBO:0000185" id="MAR02931" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02931" sboTerm="SBO:0000185" id="R_MAR02931" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -207434,7 +207471,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02931">
+            <rdf:Description rdf:about="#R_MAR02931">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_2931"/>
@@ -207445,18 +207482,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00112c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00112c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00112r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00112r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Orct"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02932" sboTerm="SBO:0000176" id="MAR02932" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02932" sboTerm="SBO:0000176" id="R_MAR02932" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -207464,7 +207501,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02932">
+            <rdf:Description rdf:about="#R_MAR02932">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.7"/>
@@ -207475,18 +207512,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00113r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00113r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00112r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00112r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CRAT"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00001" sboTerm="SBO:0000176" id="MAR00001" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00001" sboTerm="SBO:0000176" id="R_MAR00001" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -207495,7 +207532,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00001">
+            <rdf:Description rdf:about="#R_MAR00001">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.34"/>
@@ -207508,11 +207545,11 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01570e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01570e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01569e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02956e" stoichiometry="77243" constant="true"/>
+          <speciesReference species="M_MAM01569e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02956e" stoichiometry="77243" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -207525,7 +207562,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00002" sboTerm="SBO:0000176" id="MAR00002" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00002" sboTerm="SBO:0000176" id="R_MAR00002" name="triacylglycerol acylhydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -207533,7 +207570,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00002">
+            <rdf:Description rdf:about="#R_MAR00002">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.34"/>
@@ -207545,12 +207582,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02956e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02956e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00234e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01807e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00234e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01807e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -207560,7 +207597,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00003" sboTerm="SBO:0000176" id="MAR00003" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00003" sboTerm="SBO:0000176" id="R_MAR00003" name="1,2-diacyl-sn-glycerol acylhydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -207569,7 +207606,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00003">
+            <rdf:Description rdf:about="#R_MAR00003">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.3"/>
@@ -207581,12 +207618,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00234e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00234e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00503e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01807e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00503e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01807e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -207606,7 +207643,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00005" sboTerm="SBO:0000176" id="MAR00005" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00005" sboTerm="SBO:0000176" id="R_MAR00005" name="1-acylglycerol acylhydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -207615,7 +207652,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00005">
+            <rdf:Description rdf:about="#R_MAR00005">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.23"/>
@@ -207627,18 +207664,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00503c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00503c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01983c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01807c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01983c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01807c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG15111"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00449" sboTerm="SBO:0000176" id="MAR00449" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00449" sboTerm="SBO:0000176" id="R_MAR00449" name="sn-Glycerol-3-phosphate:(acceptor) 2-oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -207647,7 +207684,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00449">
+            <rdf:Description rdf:about="#R_MAR00449">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.5.3"/>
@@ -207661,18 +207698,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01802m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02914m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01802m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02914m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01690m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01803m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01690m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01803m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Gpo1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00604" sboTerm="SBO:0000176" id="MAR00604" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00604" sboTerm="SBO:0000176" id="R_MAR00604" name="ATP:1,2-diacylglycerol 3-phosphotransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -207680,7 +207717,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00604">
+            <rdf:Description rdf:about="#R_MAR00604">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.1.107"/>
@@ -207693,16 +207730,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00240c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00240c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02733c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02733c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR00605" sboTerm="SBO:0000176" id="MAR00605" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00605" sboTerm="SBO:0000176" id="R_MAR00605" name="acyl-CoA:1,2-diacyl-sn-glycerol O-acyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -207711,7 +207748,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00605">
+            <rdf:Description rdf:about="#R_MAR00605">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.20"/>
@@ -207724,12 +207761,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00240c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM10007c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00240c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM10007c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02958c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02958c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -207740,7 +207777,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00665" sboTerm="SBO:0000176" id="MAR00665" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00665" sboTerm="SBO:0000176" id="R_MAR00665" name="triacylglycerol acylhydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -207749,7 +207786,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00665">
+            <rdf:Description rdf:about="#R_MAR00665">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.3"/>
@@ -207761,13 +207798,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02958c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02958c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00240c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM10005c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00240c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM10005c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -207787,7 +207824,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00667" sboTerm="SBO:0000176" id="MAR00667" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00667" sboTerm="SBO:0000176" id="R_MAR00667" name="1,2-diacyl-sn-glycerol acylhydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -207796,7 +207833,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00667">
+            <rdf:Description rdf:about="#R_MAR00667">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.3"/>
@@ -207808,13 +207845,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00240c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00240c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00509c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM10005c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00509c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM10005c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -207834,7 +207871,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00668" sboTerm="SBO:0000176" id="MAR00668" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00668" sboTerm="SBO:0000176" id="R_MAR00668" name="1,2-diacyl-sn-glycerol acylhydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -207843,7 +207880,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00668">
+            <rdf:Description rdf:about="#R_MAR00668">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.3"/>
@@ -207855,13 +207892,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00237c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00237c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00506c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM10005c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00506c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM10005c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -207881,7 +207918,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00669" sboTerm="SBO:0000176" id="MAR00669" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00669" sboTerm="SBO:0000176" id="R_MAR00669" name="1,2-diacyl-sn-glycerol acylhydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -207890,7 +207927,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00669">
+            <rdf:Description rdf:about="#R_MAR00669">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.3"/>
@@ -207902,13 +207939,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00235c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00235c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00504c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM10005c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00504c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM10005c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -207928,7 +207965,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00670" sboTerm="SBO:0000176" id="MAR00670" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00670" sboTerm="SBO:0000176" id="R_MAR00670" name="1,2-diacyl-sn-glycerol acylhydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -207937,7 +207974,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00670">
+            <rdf:Description rdf:about="#R_MAR00670">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.3"/>
@@ -207949,13 +207986,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00236c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00236c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00505c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM10005c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00505c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM10005c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -207975,7 +208012,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00671" sboTerm="SBO:0000176" id="MAR00671" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00671" sboTerm="SBO:0000176" id="R_MAR00671" name="1,2-diacyl-sn-glycerol acylhydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -207984,7 +208021,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00671">
+            <rdf:Description rdf:about="#R_MAR00671">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.3"/>
@@ -207996,13 +208033,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00238c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00238c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00507c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM10005c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00507c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM10005c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -208022,7 +208059,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00672" sboTerm="SBO:0000176" id="MAR00672" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00672" sboTerm="SBO:0000176" id="R_MAR00672" name="1,2-diacyl-sn-glycerol acylhydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -208031,7 +208068,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00672">
+            <rdf:Description rdf:about="#R_MAR00672">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.3"/>
@@ -208043,13 +208080,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00239c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00239c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00508c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM10005c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00508c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM10005c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -208069,7 +208106,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00679" sboTerm="SBO:0000176" id="MAR00679" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00679" sboTerm="SBO:0000176" id="R_MAR00679" name="1-acylglycerol acylhydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -208078,7 +208115,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00679">
+            <rdf:Description rdf:about="#R_MAR00679">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.23"/>
@@ -208090,19 +208127,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00509c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00509c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01983c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM10005c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01983c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM10005c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG15111"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00680" sboTerm="SBO:0000176" id="MAR00680" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00680" sboTerm="SBO:0000176" id="R_MAR00680" name="1-acylglycerol acylhydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -208111,7 +208148,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00680">
+            <rdf:Description rdf:about="#R_MAR00680">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.23"/>
@@ -208123,19 +208160,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00504c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00504c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01983c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM10005c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01983c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM10005c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG15111"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00681" sboTerm="SBO:0000176" id="MAR00681" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00681" sboTerm="SBO:0000176" id="R_MAR00681" name="1-acylglycerol acylhydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -208144,7 +208181,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00681">
+            <rdf:Description rdf:about="#R_MAR00681">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.23"/>
@@ -208156,19 +208193,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00505c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00505c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01983c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM10005c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01983c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM10005c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG15111"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00682" sboTerm="SBO:0000176" id="MAR00682" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00682" sboTerm="SBO:0000176" id="R_MAR00682" name="1-acylglycerol acylhydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -208177,7 +208214,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00682">
+            <rdf:Description rdf:about="#R_MAR00682">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.23"/>
@@ -208189,19 +208226,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00507c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00507c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01983c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM10005c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01983c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM10005c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG15111"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00683" sboTerm="SBO:0000176" id="MAR00683" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00683" sboTerm="SBO:0000176" id="R_MAR00683" name="1-acylglycerol acylhydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -208210,7 +208247,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00683">
+            <rdf:Description rdf:about="#R_MAR00683">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.23"/>
@@ -208222,19 +208259,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00506c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00506c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01983c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM10005c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01983c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM10005c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG15111"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00684" sboTerm="SBO:0000176" id="MAR00684" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00684" sboTerm="SBO:0000176" id="R_MAR00684" name="1-acylglycerol acylhydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -208243,7 +208280,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00684">
+            <rdf:Description rdf:about="#R_MAR00684">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.23"/>
@@ -208255,19 +208292,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00508c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00508c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01983c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM10005c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01983c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM10005c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG15111"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07588" sboTerm="SBO:0000176" id="MAR07588" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07588" sboTerm="SBO:0000176" id="R_MAR07588" name="Acyl-CoA:glycerone-phosphate O-acyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -208275,7 +208312,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07588">
+            <rdf:Description rdf:about="#R_MAR07588">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.42"/>
@@ -208288,18 +208325,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01690c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM10007c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01690c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM10007c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01278c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01278c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Gnpat"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03053" sboTerm="SBO:0000176" id="MAR03053" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03053" sboTerm="SBO:0000176" id="R_MAR03053" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -208307,7 +208344,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03053">
+            <rdf:Description rdf:about="#R_MAR03053">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_3053"/>
@@ -208317,20 +208354,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00317x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597x" stoichiometry="11" constant="true"/>
-          <speciesReference species="MAM02040x" stoichiometry="11" constant="true"/>
-          <speciesReference species="MAM02552x" stoichiometry="11" constant="true"/>
-          <speciesReference species="MAM02630x" stoichiometry="7" constant="true"/>
+          <speciesReference species="M_MAM00317x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597x" stoichiometry="11" constant="true"/>
+          <speciesReference species="M_MAM02040x" stoichiometry="11" constant="true"/>
+          <speciesReference species="M_MAM02552x" stoichiometry="11" constant="true"/>
+          <speciesReference species="M_MAM02630x" stoichiometry="7" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261x" stoichiometry="12" constant="true"/>
-          <speciesReference species="MAM02039x" stoichiometry="11" constant="true"/>
-          <speciesReference species="MAM02041x" stoichiometry="7" constant="true"/>
-          <speciesReference species="MAM02553x" stoichiometry="11" constant="true"/>
+          <speciesReference species="M_MAM01261x" stoichiometry="12" constant="true"/>
+          <speciesReference species="M_MAM02039x" stoichiometry="11" constant="true"/>
+          <speciesReference species="M_MAM02041x" stoichiometry="7" constant="true"/>
+          <speciesReference species="M_MAM02553x" stoichiometry="11" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03054" sboTerm="SBO:0000176" id="MAR03054" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03054" sboTerm="SBO:0000176" id="R_MAR03054" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -208338,7 +208375,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03054">
+            <rdf:Description rdf:about="#R_MAR03054">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_3054"/>
@@ -208348,20 +208385,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00134x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597x" stoichiometry="11" constant="true"/>
-          <speciesReference species="MAM02040x" stoichiometry="11" constant="true"/>
-          <speciesReference species="MAM02552x" stoichiometry="11" constant="true"/>
-          <speciesReference species="MAM02630x" stoichiometry="6" constant="true"/>
+          <speciesReference species="M_MAM00134x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597x" stoichiometry="11" constant="true"/>
+          <speciesReference species="M_MAM02040x" stoichiometry="11" constant="true"/>
+          <speciesReference species="M_MAM02552x" stoichiometry="11" constant="true"/>
+          <speciesReference species="M_MAM02630x" stoichiometry="6" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261x" stoichiometry="12" constant="true"/>
-          <speciesReference species="MAM02039x" stoichiometry="11" constant="true"/>
-          <speciesReference species="MAM02041x" stoichiometry="6" constant="true"/>
-          <speciesReference species="MAM02553x" stoichiometry="11" constant="true"/>
+          <speciesReference species="M_MAM01261x" stoichiometry="12" constant="true"/>
+          <speciesReference species="M_MAM02039x" stoichiometry="11" constant="true"/>
+          <speciesReference species="M_MAM02041x" stoichiometry="6" constant="true"/>
+          <speciesReference species="M_MAM02553x" stoichiometry="11" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03055" sboTerm="SBO:0000176" id="MAR03055" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03055" sboTerm="SBO:0000176" id="R_MAR03055" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -208369,7 +208406,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03055">
+            <rdf:Description rdf:about="#R_MAR03055">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_3055"/>
@@ -208379,20 +208416,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00131x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597x" stoichiometry="11" constant="true"/>
-          <speciesReference species="MAM02040x" stoichiometry="11" constant="true"/>
-          <speciesReference species="MAM02552x" stoichiometry="11" constant="true"/>
-          <speciesReference species="MAM02630x" stoichiometry="11" constant="true"/>
+          <speciesReference species="M_MAM00131x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597x" stoichiometry="11" constant="true"/>
+          <speciesReference species="M_MAM02040x" stoichiometry="11" constant="true"/>
+          <speciesReference species="M_MAM02552x" stoichiometry="11" constant="true"/>
+          <speciesReference species="M_MAM02630x" stoichiometry="11" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261x" stoichiometry="12" constant="true"/>
-          <speciesReference species="MAM02039x" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM02041x" stoichiometry="11" constant="true"/>
-          <speciesReference species="MAM02553x" stoichiometry="11" constant="true"/>
+          <speciesReference species="M_MAM01261x" stoichiometry="12" constant="true"/>
+          <speciesReference species="M_MAM02039x" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM02041x" stoichiometry="11" constant="true"/>
+          <speciesReference species="M_MAM02553x" stoichiometry="11" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03057" sboTerm="SBO:0000176" id="MAR03057" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03057" sboTerm="SBO:0000176" id="R_MAR03057" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -208401,7 +208438,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03057">
+            <rdf:Description rdf:about="#R_MAR03057">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.3.6"/>
@@ -208414,12 +208451,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02110x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02110x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00049x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02041x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00049x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -208428,7 +208465,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03058" sboTerm="SBO:0000176" id="MAR03058" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03058" sboTerm="SBO:0000176" id="R_MAR03058" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -208437,7 +208474,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03058">
+            <rdf:Description rdf:about="#R_MAR03058">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.17"/>
@@ -208450,14 +208487,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00049x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00049x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00783x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00783x" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03059" sboTerm="SBO:0000176" id="MAR03059" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03059" sboTerm="SBO:0000176" id="R_MAR03059" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -208466,7 +208503,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03059">
+            <rdf:Description rdf:about="#R_MAR03059">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.35"/>
@@ -208480,19 +208517,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00783x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00783x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00878x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00878x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Mfe2"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03060" sboTerm="SBO:0000176" id="MAR03060" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03060" sboTerm="SBO:0000176" id="R_MAR03060" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -208501,7 +208538,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03060">
+            <rdf:Description rdf:about="#R_MAR03060">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.16"/>
@@ -208514,18 +208551,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00878x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00878x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02971x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02971x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="didum"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03062" sboTerm="SBO:0000176" id="MAR03062" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03062" sboTerm="SBO:0000176" id="R_MAR03062" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -208533,7 +208570,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03062">
+            <rdf:Description rdf:about="#R_MAR03062">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.3.6"/>
@@ -208546,12 +208583,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02630x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02971x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02971x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00064x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02041x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00064x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -208560,7 +208597,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03063" sboTerm="SBO:0000176" id="MAR03063" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03063" sboTerm="SBO:0000176" id="R_MAR03063" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -208568,7 +208605,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03063">
+            <rdf:Description rdf:about="#R_MAR03063">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.17"/>
@@ -208579,14 +208616,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00064x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00064x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00800x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00800x" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03064" sboTerm="SBO:0000176" id="MAR03064" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03064" sboTerm="SBO:0000176" id="R_MAR03064" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -208594,7 +208631,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03064">
+            <rdf:Description rdf:about="#R_MAR03064">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.35"/>
@@ -208606,19 +208643,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00800x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00800x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00904x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00904x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Mfe2"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03065" sboTerm="SBO:0000176" id="MAR03065" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03065" sboTerm="SBO:0000176" id="R_MAR03065" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -208626,7 +208663,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03065">
+            <rdf:Description rdf:about="#R_MAR03065">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.16"/>
@@ -208637,18 +208674,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00904x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00904x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01725x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01725x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="didum"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03066" sboTerm="SBO:0000176" id="MAR03066" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03066" sboTerm="SBO:0000176" id="R_MAR03066" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -208656,7 +208693,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03066">
+            <rdf:Description rdf:about="#R_MAR03066">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.3.6"/>
@@ -208667,12 +208704,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01725x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01725x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00040x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02041x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00040x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -208681,7 +208718,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03067" sboTerm="SBO:0000176" id="MAR03067" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03067" sboTerm="SBO:0000176" id="R_MAR03067" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -208689,7 +208726,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03067">
+            <rdf:Description rdf:about="#R_MAR03067">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.17"/>
@@ -208700,14 +208737,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00040x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00040x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00776x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00776x" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03068" sboTerm="SBO:0000176" id="MAR03068" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03068" sboTerm="SBO:0000176" id="R_MAR03068" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -208715,7 +208752,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03068">
+            <rdf:Description rdf:about="#R_MAR03068">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.35"/>
@@ -208727,19 +208764,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00776x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00776x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00866x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00866x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Mfe2"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03069" sboTerm="SBO:0000176" id="MAR03069" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03069" sboTerm="SBO:0000176" id="R_MAR03069" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -208747,7 +208784,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03069">
+            <rdf:Description rdf:about="#R_MAR03069">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.16"/>
@@ -208758,18 +208795,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00866x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00866x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01773x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01773x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="didum"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03070" sboTerm="SBO:0000176" id="MAR03070" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03070" sboTerm="SBO:0000176" id="R_MAR03070" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -208777,7 +208814,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03070">
+            <rdf:Description rdf:about="#R_MAR03070">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.3.6"/>
@@ -208788,12 +208825,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01773x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01773x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00043x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02041x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00043x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -208802,7 +208839,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03071" sboTerm="SBO:0000176" id="MAR03071" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03071" sboTerm="SBO:0000176" id="R_MAR03071" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -208810,7 +208847,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03071">
+            <rdf:Description rdf:about="#R_MAR03071">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.17"/>
@@ -208821,14 +208858,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00043x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00043x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00777x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00777x" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03072" sboTerm="SBO:0000176" id="MAR03072" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03072" sboTerm="SBO:0000176" id="R_MAR03072" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -208836,7 +208873,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03072">
+            <rdf:Description rdf:about="#R_MAR03072">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.35"/>
@@ -208848,19 +208885,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00777x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00777x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00872x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00872x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Mfe2"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03073" sboTerm="SBO:0000176" id="MAR03073" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03073" sboTerm="SBO:0000176" id="R_MAR03073" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -208868,7 +208905,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03073">
+            <rdf:Description rdf:about="#R_MAR03073">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.16"/>
@@ -208879,18 +208916,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00872x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00872x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02941x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02941x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="didum"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03074" sboTerm="SBO:0000176" id="MAR03074" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03074" sboTerm="SBO:0000176" id="R_MAR03074" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -208898,7 +208935,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03074">
+            <rdf:Description rdf:about="#R_MAR03074">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.3.6"/>
@@ -208909,12 +208946,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02630x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02941x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02941x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00057x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02041x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00057x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -208923,7 +208960,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03075" sboTerm="SBO:0000176" id="MAR03075" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03075" sboTerm="SBO:0000176" id="R_MAR03075" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -208931,7 +208968,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03075">
+            <rdf:Description rdf:about="#R_MAR03075">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.17"/>
@@ -208945,14 +208982,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00057x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00057x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00793x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00793x" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03076" sboTerm="SBO:0000176" id="MAR03076" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03076" sboTerm="SBO:0000176" id="R_MAR03076" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -208960,7 +208997,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03076">
+            <rdf:Description rdf:about="#R_MAR03076">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.35"/>
@@ -208974,19 +209011,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00793x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00793x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00890x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00890x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Mfe2"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03077" sboTerm="SBO:0000176" id="MAR03077" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03077" sboTerm="SBO:0000176" id="R_MAR03077" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -208994,7 +209031,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03077">
+            <rdf:Description rdf:about="#R_MAR03077">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.16"/>
@@ -209005,18 +209042,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00890x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00890x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02678x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02678x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="didum"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03078" sboTerm="SBO:0000176" id="MAR03078" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03078" sboTerm="SBO:0000176" id="R_MAR03078" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -209025,7 +209062,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03078">
+            <rdf:Description rdf:about="#R_MAR03078">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.3.6"/>
@@ -209038,12 +209075,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02630x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02678x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02678x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00051x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02041x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00051x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -209052,7 +209089,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03079" sboTerm="SBO:0000176" id="MAR03079" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03079" sboTerm="SBO:0000176" id="R_MAR03079" name="(S)-3-Hydroxyhexadecanoyl-CoA hydro-lyase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -209061,7 +209098,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03079">
+            <rdf:Description rdf:about="#R_MAR03079">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.17"/>
@@ -209074,14 +209111,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00051x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00051x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00175x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00175x" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03080" sboTerm="SBO:0000176" id="MAR03080" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03080" sboTerm="SBO:0000176" id="R_MAR03080" name="(S)-3-Hydroxyhexadecanoyl-CoA:NAD+ oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -209090,7 +209127,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03080">
+            <rdf:Description rdf:about="#R_MAR03080">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.35"/>
@@ -209104,19 +209141,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00175x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00175x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00895x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00895x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Mfe2"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03081" sboTerm="SBO:0000176" id="MAR03081" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03081" sboTerm="SBO:0000176" id="R_MAR03081" name="myristoyl-CoA:acetylCoA C-myristoyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -209125,7 +209162,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03081">
+            <rdf:Description rdf:about="#R_MAR03081">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.16"/>
@@ -209139,18 +209176,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00895x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00895x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02495x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02495x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="didum"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03082" sboTerm="SBO:0000176" id="MAR03082" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03082" sboTerm="SBO:0000176" id="R_MAR03082" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -209159,7 +209196,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03082">
+            <rdf:Description rdf:about="#R_MAR03082">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.3.6"/>
@@ -209170,12 +209207,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02495x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02495x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00066x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02041x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00066x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -209184,7 +209221,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03083" sboTerm="SBO:0000176" id="MAR03083" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03083" sboTerm="SBO:0000176" id="R_MAR03083" name="(S)-3-Hydroxytetradecanoyl-CoA hydro-lyase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -209193,7 +209230,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03083">
+            <rdf:Description rdf:about="#R_MAR03083">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.17"/>
@@ -209206,14 +209243,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00066x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00066x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00178x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00178x" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03084" sboTerm="SBO:0000176" id="MAR03084" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03084" sboTerm="SBO:0000176" id="R_MAR03084" name="(S)-3-Hydroxytetradecanoyl-CoA:NAD+ oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -209222,7 +209259,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03084">
+            <rdf:Description rdf:about="#R_MAR03084">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.35"/>
@@ -209236,19 +209273,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00178x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00178x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00906x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00906x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Mfe2"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03085" sboTerm="SBO:0000176" id="MAR03085" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03085" sboTerm="SBO:0000176" id="R_MAR03085" name="Lauroyl-CoA:acetyl-CoA C-acyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -209257,7 +209294,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03085">
+            <rdf:Description rdf:about="#R_MAR03085">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.16"/>
@@ -209271,18 +209308,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00906x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00906x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02345x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02345x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="didum"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03086" sboTerm="SBO:0000176" id="MAR03086" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03086" sboTerm="SBO:0000176" id="R_MAR03086" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -209291,7 +209328,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03086">
+            <rdf:Description rdf:about="#R_MAR03086">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.3.6"/>
@@ -209303,12 +209340,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02345x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02345x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00042x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02041x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00042x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -209317,7 +209354,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03087" sboTerm="SBO:0000176" id="MAR03087" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03087" sboTerm="SBO:0000176" id="R_MAR03087" name="(S)-3-Hydroxydodecanoyl-CoA hydro-lyase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -209326,7 +209363,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03087">
+            <rdf:Description rdf:about="#R_MAR03087">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.17"/>
@@ -209339,14 +209376,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00042x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00042x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00174x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00174x" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03088" sboTerm="SBO:0000176" id="MAR03088" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03088" sboTerm="SBO:0000176" id="R_MAR03088" name="(S)-3-hydroxydodecanoyl-CoA:NAD+ oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -209355,7 +209392,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03088">
+            <rdf:Description rdf:about="#R_MAR03088">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.35"/>
@@ -209369,19 +209406,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00174x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00174x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00868x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00868x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Mfe2"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03089" sboTerm="SBO:0000176" id="MAR03089" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03089" sboTerm="SBO:0000176" id="R_MAR03089" name="Decanoyl-CoA:acetyl-CoA C-acyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -209390,7 +209427,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03089">
+            <rdf:Description rdf:about="#R_MAR03089">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.16"/>
@@ -209407,18 +209444,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00868x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00868x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01650x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01650x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="didum"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03090" sboTerm="SBO:0000176" id="MAR03090" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03090" sboTerm="SBO:0000176" id="R_MAR03090" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -209427,7 +209464,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03090">
+            <rdf:Description rdf:about="#R_MAR03090">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.3.6"/>
@@ -209441,12 +209478,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01650x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01650x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00039x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02041x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00039x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -209455,7 +209492,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03091" sboTerm="SBO:0000176" id="MAR03091" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03091" sboTerm="SBO:0000176" id="R_MAR03091" name="(S)-Hydroxydecanoyl-CoA hydro-lyase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -209464,7 +209501,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03091">
+            <rdf:Description rdf:about="#R_MAR03091">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.17"/>
@@ -209477,14 +209514,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00039x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00039x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00181x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00181x" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03092" sboTerm="SBO:0000176" id="MAR03092" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03092" sboTerm="SBO:0000176" id="R_MAR03092" name="(S)-hydroxydecanoyl-CoA:NAD+ oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -209493,7 +209530,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03092">
+            <rdf:Description rdf:about="#R_MAR03092">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.35"/>
@@ -209507,19 +209544,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00181x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00181x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00858x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00858x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Mfe2"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03093" sboTerm="SBO:0000176" id="MAR03093" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03093" sboTerm="SBO:0000176" id="R_MAR03093" name="Octanoyl-CoA:acetyl-CoA C-acyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -209528,7 +209565,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03093">
+            <rdf:Description rdf:about="#R_MAR03093">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.16"/>
@@ -209544,18 +209581,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00858x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00858x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02644x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02644x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="didum"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03094" sboTerm="SBO:0000176" id="MAR03094" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03094" sboTerm="SBO:0000176" id="R_MAR03094" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -209564,7 +209601,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03094">
+            <rdf:Description rdf:about="#R_MAR03094">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.3.6"/>
@@ -209577,12 +209614,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02630x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02644x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02644x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00059x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02041x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00059x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -209591,7 +209628,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03095" sboTerm="SBO:0000176" id="MAR03095" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03095" sboTerm="SBO:0000176" id="R_MAR03095" name="(S)-Hydroxyoctanoyl-CoA hydro-lyase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -209600,7 +209637,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03095">
+            <rdf:Description rdf:about="#R_MAR03095">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.17"/>
@@ -209612,14 +209649,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00059x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00059x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00183x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00183x" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03096" sboTerm="SBO:0000176" id="MAR03096" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03096" sboTerm="SBO:0000176" id="R_MAR03096" name="(S)-hydroxyoctanoyl-CoA:NAD+ oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -209628,7 +209665,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03096">
+            <rdf:Description rdf:about="#R_MAR03096">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.35"/>
@@ -209641,19 +209678,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00183x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00183x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00892x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00892x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Mfe2"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03097" sboTerm="SBO:0000176" id="MAR03097" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03097" sboTerm="SBO:0000176" id="R_MAR03097" name="Hexanoyl-CoA:acetyl-CoA C-acyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -209662,7 +209699,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03097">
+            <rdf:Description rdf:about="#R_MAR03097">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.16"/>
@@ -209676,18 +209713,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00892x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00892x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02122x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02122x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="didum"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03098" sboTerm="SBO:0000176" id="MAR03098" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03098" sboTerm="SBO:0000176" id="R_MAR03098" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -209696,7 +209733,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03098">
+            <rdf:Description rdf:about="#R_MAR03098">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.3.6"/>
@@ -209709,12 +209746,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02122x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02122x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00053x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02041x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00053x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -209723,7 +209760,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03099" sboTerm="SBO:0000176" id="MAR03099" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03099" sboTerm="SBO:0000176" id="R_MAR03099" name="(S)-Hydroxyhexanoyl-CoA hydro-lyase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -209732,7 +209769,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03099">
+            <rdf:Description rdf:about="#R_MAR03099">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.17"/>
@@ -209744,14 +209781,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00053x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00053x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00182x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00182x" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03100" sboTerm="SBO:0000176" id="MAR03100" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03100" sboTerm="SBO:0000176" id="R_MAR03100" name="(S)-hydroxyhexanoyl-CoA:NAD+ oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -209760,7 +209797,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03100">
+            <rdf:Description rdf:about="#R_MAR03100">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.35"/>
@@ -209773,19 +209810,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00182x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00182x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00882x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00882x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Mfe2"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03101" sboTerm="SBO:0000176" id="MAR03101" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03101" sboTerm="SBO:0000176" id="R_MAR03101" name="butanoyl-CoA:acetyl-CoA C-butanoyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -209794,7 +209831,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03101">
+            <rdf:Description rdf:about="#R_MAR03101">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.16"/>
@@ -209806,18 +209843,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00882x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00882x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01412x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01412x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="didum"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03102" sboTerm="SBO:0000176" id="MAR03102" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03102" sboTerm="SBO:0000176" id="R_MAR03102" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -209826,7 +209863,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03102">
+            <rdf:Description rdf:about="#R_MAR03102">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.3.6"/>
@@ -209837,12 +209874,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01412x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01412x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01622x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02041x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01622x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -209851,7 +209888,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03103" sboTerm="SBO:0000176" id="MAR03103" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03103" sboTerm="SBO:0000176" id="R_MAR03103" name="(S)-3-hydroxybutanoyl-CoA hydro-lyase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -209860,7 +209897,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03103">
+            <rdf:Description rdf:about="#R_MAR03103">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.17"/>
@@ -209872,14 +209909,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01622x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01622x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00173x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00173x" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03104" sboTerm="SBO:0000176" id="MAR03104" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03104" sboTerm="SBO:0000176" id="R_MAR03104" name="(S)-3-Hydroxybutanoyl-CoA:NAD+ oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -209888,7 +209925,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03104">
+            <rdf:Description rdf:about="#R_MAR03104">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.35"/>
@@ -209901,19 +209938,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00173x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00173x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01255x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01255x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Mfe2"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03106" sboTerm="SBO:0000185" id="MAR03106" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03106" sboTerm="SBO:0000185" id="R_MAR03106" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -209921,7 +209958,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03106">
+            <rdf:Description rdf:about="#R_MAR03106">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_3106"/>
@@ -209931,13 +209968,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01261c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261x" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03056" sboTerm="SBO:0000176" id="MAR03056" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03056" sboTerm="SBO:0000176" id="R_MAR03056" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -209946,7 +209983,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03056">
+            <rdf:Description rdf:about="#R_MAR03056">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_3056"/>
@@ -209956,21 +209993,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597x" stoichiometry="10" constant="true"/>
-          <speciesReference species="MAM02040x" stoichiometry="10" constant="true"/>
-          <speciesReference species="MAM02552x" stoichiometry="10" constant="true"/>
-          <speciesReference species="MAM02630x" stoichiometry="10" constant="true"/>
-          <speciesReference species="MAM03047x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597x" stoichiometry="10" constant="true"/>
+          <speciesReference species="M_MAM02040x" stoichiometry="10" constant="true"/>
+          <speciesReference species="M_MAM02552x" stoichiometry="10" constant="true"/>
+          <speciesReference species="M_MAM02630x" stoichiometry="10" constant="true"/>
+          <speciesReference species="M_MAM03047x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261x" stoichiometry="10" constant="true"/>
-          <speciesReference species="MAM02039x" stoichiometry="10" constant="true"/>
-          <speciesReference species="MAM02041x" stoichiometry="10" constant="true"/>
-          <speciesReference species="MAM02553x" stoichiometry="10" constant="true"/>
-          <speciesReference species="MAM02774x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261x" stoichiometry="10" constant="true"/>
+          <speciesReference species="M_MAM02039x" stoichiometry="10" constant="true"/>
+          <speciesReference species="M_MAM02041x" stoichiometry="10" constant="true"/>
+          <speciesReference species="M_MAM02553x" stoichiometry="10" constant="true"/>
+          <speciesReference species="M_MAM02774x" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03326" sboTerm="SBO:0000176" id="MAR03326" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03326" sboTerm="SBO:0000176" id="R_MAR03326" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -209978,7 +210015,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03326">
+            <rdf:Description rdf:about="#R_MAR03326">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.3.6"/>
@@ -209989,12 +210026,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02112x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02112x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02041x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03016x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03016x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -210003,7 +210040,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03327" sboTerm="SBO:0000176" id="MAR03327" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03327" sboTerm="SBO:0000176" id="R_MAR03327" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -210011,7 +210048,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03327">
+            <rdf:Description rdf:about="#R_MAR03327">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.17"/>
@@ -210022,14 +210059,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03016x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03016x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00715x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00715x" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03328" sboTerm="SBO:0000176" id="MAR03328" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03328" sboTerm="SBO:0000176" id="R_MAR03328" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -210037,7 +210074,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03328">
+            <rdf:Description rdf:about="#R_MAR03328">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.35"/>
@@ -210049,19 +210086,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00715x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00715x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00879x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00879x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Mfe2"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03329" sboTerm="SBO:0000176" id="MAR03329" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03329" sboTerm="SBO:0000176" id="R_MAR03329" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -210069,7 +210106,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03329">
+            <rdf:Description rdf:about="#R_MAR03329">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.16"/>
@@ -210080,18 +210117,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00879x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00879x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00025x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01261x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00025x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="didum"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03330" sboTerm="SBO:0000176" id="MAR03330" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03330" sboTerm="SBO:0000176" id="R_MAR03330" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -210099,7 +210136,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03330">
+            <rdf:Description rdf:about="#R_MAR03330">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.3.6"/>
@@ -210110,12 +210147,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00025x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00025x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02041x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03015x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03015x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -210124,7 +210161,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03331" sboTerm="SBO:0000176" id="MAR03331" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03331" sboTerm="SBO:0000176" id="R_MAR03331" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -210132,7 +210169,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03331">
+            <rdf:Description rdf:about="#R_MAR03331">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.17"/>
@@ -210143,14 +210180,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03015x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03015x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00709x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00709x" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03332" sboTerm="SBO:0000176" id="MAR03332" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03332" sboTerm="SBO:0000176" id="R_MAR03332" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -210158,7 +210195,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03332">
+            <rdf:Description rdf:about="#R_MAR03332">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.35"/>
@@ -210170,19 +210207,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00709x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00709x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00856x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00856x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Mfe2"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03333" sboTerm="SBO:0000176" id="MAR03333" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03333" sboTerm="SBO:0000176" id="R_MAR03333" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -210190,7 +210227,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03333">
+            <rdf:Description rdf:about="#R_MAR03333">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.16"/>
@@ -210201,18 +210238,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00856x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00856x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00016x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01261x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00016x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="didum"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03334" sboTerm="SBO:0000176" id="MAR03334" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03334" sboTerm="SBO:0000176" id="R_MAR03334" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -210220,7 +210257,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03334">
+            <rdf:Description rdf:about="#R_MAR03334">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.3.6"/>
@@ -210231,12 +210268,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00016x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00016x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02041x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03013x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03013x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -210245,7 +210282,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03335" sboTerm="SBO:0000176" id="MAR03335" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03335" sboTerm="SBO:0000176" id="R_MAR03335" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -210253,7 +210290,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03335">
+            <rdf:Description rdf:about="#R_MAR03335">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.17"/>
@@ -210264,14 +210301,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03013x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03013x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00701x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00701x" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03336" sboTerm="SBO:0000176" id="MAR03336" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03336" sboTerm="SBO:0000176" id="R_MAR03336" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -210279,7 +210316,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03336">
+            <rdf:Description rdf:about="#R_MAR03336">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.35"/>
@@ -210291,19 +210328,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00701x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00701x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00842x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00842x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Mfe2"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03337" sboTerm="SBO:0000176" id="MAR03337" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03337" sboTerm="SBO:0000176" id="R_MAR03337" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -210311,7 +210348,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03337">
+            <rdf:Description rdf:about="#R_MAR03337">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.16"/>
@@ -210322,18 +210359,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00842x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00842x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00007x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01261x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00007x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="didum"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03338" sboTerm="SBO:0000176" id="MAR03338" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03338" sboTerm="SBO:0000176" id="R_MAR03338" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -210341,7 +210378,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03338">
+            <rdf:Description rdf:about="#R_MAR03338">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.3.6"/>
@@ -210352,12 +210389,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00007x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00007x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02041x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03012x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03012x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -210366,7 +210403,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03339" sboTerm="SBO:0000176" id="MAR03339" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03339" sboTerm="SBO:0000176" id="R_MAR03339" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -210374,7 +210411,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03339">
+            <rdf:Description rdf:about="#R_MAR03339">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.17"/>
@@ -210385,14 +210422,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03012x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03012x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00700x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00700x" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03340" sboTerm="SBO:0000176" id="MAR03340" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03340" sboTerm="SBO:0000176" id="R_MAR03340" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -210400,7 +210437,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03340">
+            <rdf:Description rdf:about="#R_MAR03340">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.35"/>
@@ -210412,19 +210449,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00700x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00700x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00840x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00840x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Mfe2"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03341" sboTerm="SBO:0000176" id="MAR03341" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03341" sboTerm="SBO:0000176" id="R_MAR03341" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -210432,7 +210469,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03341">
+            <rdf:Description rdf:about="#R_MAR03341">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.16"/>
@@ -210443,18 +210480,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00840x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00840x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02647x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02647x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="didum"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03342" sboTerm="SBO:0000176" id="MAR03342" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03342" sboTerm="SBO:0000176" id="R_MAR03342" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -210462,7 +210499,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03342">
+            <rdf:Description rdf:about="#R_MAR03342">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.3.6"/>
@@ -210473,12 +210510,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02630x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02647x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02647x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02041x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03025x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03025x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -210487,7 +210524,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03343" sboTerm="SBO:0000176" id="MAR03343" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03343" sboTerm="SBO:0000176" id="R_MAR03343" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -210495,7 +210532,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03343">
+            <rdf:Description rdf:about="#R_MAR03343">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.17"/>
@@ -210506,14 +210543,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03025x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03025x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00176x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00176x" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03344" sboTerm="SBO:0000176" id="MAR03344" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03344" sboTerm="SBO:0000176" id="R_MAR03344" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -210521,7 +210558,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03344">
+            <rdf:Description rdf:about="#R_MAR03344">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.35"/>
@@ -210533,19 +210570,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00176x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00176x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00893x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00893x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Mfe2"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03345" sboTerm="SBO:0000176" id="MAR03345" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03345" sboTerm="SBO:0000176" id="R_MAR03345" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -210553,7 +210590,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03345">
+            <rdf:Description rdf:about="#R_MAR03345">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.16"/>
@@ -210564,18 +210601,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00893x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00893x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01191x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01261x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01191x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="didum"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03346" sboTerm="SBO:0000176" id="MAR03346" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03346" sboTerm="SBO:0000176" id="R_MAR03346" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -210584,7 +210621,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03346">
+            <rdf:Description rdf:about="#R_MAR03346">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.3.6"/>
@@ -210595,12 +210632,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01191x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01191x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02041x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03019x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03019x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -210609,7 +210646,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03347" sboTerm="SBO:0000176" id="MAR03347" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03347" sboTerm="SBO:0000176" id="R_MAR03347" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -210618,7 +210655,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03347">
+            <rdf:Description rdf:about="#R_MAR03347">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.17"/>
@@ -210629,14 +210666,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03019x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03019x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00172x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00172x" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03348" sboTerm="SBO:0000176" id="MAR03348" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03348" sboTerm="SBO:0000176" id="R_MAR03348" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -210645,7 +210682,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03348">
+            <rdf:Description rdf:about="#R_MAR03348">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.35"/>
@@ -210657,19 +210694,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00172x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00172x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00849x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00849x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Mfe2"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03349" sboTerm="SBO:0000176" id="MAR03349" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03349" sboTerm="SBO:0000176" id="R_MAR03349" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -210678,7 +210715,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03349">
+            <rdf:Description rdf:about="#R_MAR03349">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.16"/>
@@ -210689,18 +210726,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00849x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00849x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01141x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01261x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01141x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="didum"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03350" sboTerm="SBO:0000176" id="MAR03350" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03350" sboTerm="SBO:0000176" id="R_MAR03350" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -210709,7 +210746,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03350">
+            <rdf:Description rdf:about="#R_MAR03350">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.3.6"/>
@@ -210720,12 +210757,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01141x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01141x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02041x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03022x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03022x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -210734,7 +210771,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03351" sboTerm="SBO:0000176" id="MAR03351" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03351" sboTerm="SBO:0000176" id="R_MAR03351" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -210743,7 +210780,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03351">
+            <rdf:Description rdf:about="#R_MAR03351">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.17"/>
@@ -210754,14 +210791,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03022x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03022x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01573x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01573x" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03352" sboTerm="SBO:0000176" id="MAR03352" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03352" sboTerm="SBO:0000176" id="R_MAR03352" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -210770,7 +210807,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03352">
+            <rdf:Description rdf:about="#R_MAR03352">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.35"/>
@@ -210782,19 +210819,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01573x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01573x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00885x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00885x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Mfe2"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03353" sboTerm="SBO:0000176" id="MAR03353" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03353" sboTerm="SBO:0000176" id="R_MAR03353" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -210803,7 +210840,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03353">
+            <rdf:Description rdf:about="#R_MAR03353">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.16"/>
@@ -210814,18 +210851,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00885x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00885x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00088x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01261x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00088x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="didum"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03355" sboTerm="SBO:0000176" id="MAR03355" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03355" sboTerm="SBO:0000176" id="R_MAR03355" name="3-cis-Dodecenoyl-CoA delta3-cis-delta2-trans-isomerase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -210834,7 +210871,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03355">
+            <rdf:Description rdf:about="#R_MAR03355">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/5.3.3.8"/>
@@ -210850,13 +210887,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00042x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00042x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00088x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00088x" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03364" sboTerm="SBO:0000176" id="MAR03364" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03364" sboTerm="SBO:0000176" id="R_MAR03364" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -210865,7 +210902,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03364">
+            <rdf:Description rdf:about="#R_MAR03364">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.3.6"/>
@@ -210875,12 +210912,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02630x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02677x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02677x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02041x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03020x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03020x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -210889,7 +210926,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03365" sboTerm="SBO:0000176" id="MAR03365" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03365" sboTerm="SBO:0000176" id="R_MAR03365" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -210898,7 +210935,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03365">
+            <rdf:Description rdf:about="#R_MAR03365">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.17"/>
@@ -210909,14 +210946,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03020x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03020x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00177x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00177x" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03367" sboTerm="SBO:0000176" id="MAR03367" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03367" sboTerm="SBO:0000176" id="R_MAR03367" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -210925,7 +210962,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03367">
+            <rdf:Description rdf:about="#R_MAR03367">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.35"/>
@@ -210937,19 +210974,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00177x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00177x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00894x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00894x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Mfe2"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03368" sboTerm="SBO:0000176" id="MAR03368" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03368" sboTerm="SBO:0000176" id="R_MAR03368" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -210958,7 +210995,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03368">
+            <rdf:Description rdf:about="#R_MAR03368">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.16"/>
@@ -210969,18 +211006,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00894x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00894x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00118x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01261x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00118x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="didum"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03369" sboTerm="SBO:0000176" id="MAR03369" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03369" sboTerm="SBO:0000176" id="R_MAR03369" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -210989,7 +211026,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03369">
+            <rdf:Description rdf:about="#R_MAR03369">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.3.6"/>
@@ -210999,12 +211036,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00118x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00118x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02041x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03023x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03023x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -211013,7 +211050,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03370" sboTerm="SBO:0000176" id="MAR03370" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03370" sboTerm="SBO:0000176" id="R_MAR03370" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -211022,7 +211059,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03370">
+            <rdf:Description rdf:about="#R_MAR03370">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.17"/>
@@ -211033,14 +211070,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03023x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03023x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01574x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01574x" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03372" sboTerm="SBO:0000176" id="MAR03372" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03372" sboTerm="SBO:0000176" id="R_MAR03372" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -211049,7 +211086,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03372">
+            <rdf:Description rdf:about="#R_MAR03372">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.35"/>
@@ -211061,19 +211098,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01574x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01574x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00886x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00886x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Mfe2"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03373" sboTerm="SBO:0000176" id="MAR03373" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03373" sboTerm="SBO:0000176" id="R_MAR03373" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -211082,7 +211119,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03373">
+            <rdf:Description rdf:about="#R_MAR03373">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.16"/>
@@ -211093,18 +211130,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00886x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00886x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00099x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01261x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00099x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="didum"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03375" sboTerm="SBO:0000176" id="MAR03375" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03375" sboTerm="SBO:0000176" id="R_MAR03375" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -211112,7 +211149,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03375">
+            <rdf:Description rdf:about="#R_MAR03375">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/5.3.3.8"/>
@@ -211123,13 +211160,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00042x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00042x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00099x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00099x" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03478" sboTerm="SBO:0000185" id="MAR03478" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03478" sboTerm="SBO:0000185" id="R_MAR03478" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -211137,7 +211174,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03478">
+            <rdf:Description rdf:about="#R_MAR03478">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_3478"/>
@@ -211147,13 +211184,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02746c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02746c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02746x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02746x" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03480" sboTerm="SBO:0000176" id="MAR03480" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03480" sboTerm="SBO:0000176" id="R_MAR03480" name="Phytanate:CoA ligase (AMP-forming)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -211162,7 +211199,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03480">
+            <rdf:Description rdf:about="#R_MAR03480">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.24"/>
@@ -211175,20 +211212,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01334c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02747c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02747c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02746c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02746c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Fatp1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03481" sboTerm="SBO:0000185" id="MAR03481" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03481" sboTerm="SBO:0000185" id="R_MAR03481" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -211196,7 +211233,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03481">
+            <rdf:Description rdf:about="#R_MAR03481">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/SCP21x"/>
@@ -211206,16 +211243,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02747c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02747c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02747x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02747x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="ScpX"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03482" sboTerm="SBO:0000176" id="MAR03482" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03482" sboTerm="SBO:0000176" id="R_MAR03482" name="Phytanate:CoA ligase (AMP-forming)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -211224,7 +211261,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03482">
+            <rdf:Description rdf:about="#R_MAR03482">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.24"/>
@@ -211237,20 +211274,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01334x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02747x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02747x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01371x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02746x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02746x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Fatp1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03486" sboTerm="SBO:0000176" id="MAR03486" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03486" sboTerm="SBO:0000176" id="R_MAR03486" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -211259,7 +211296,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03486">
+            <rdf:Description rdf:about="#R_MAR03486">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.1.-.-"/>
@@ -211272,17 +211309,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00655x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00655x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00564x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01836x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00564x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01836x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Hacl"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03489" sboTerm="SBO:0000176" id="MAR03489" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03489" sboTerm="SBO:0000176" id="R_MAR03489" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -211291,7 +211328,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03489">
+            <rdf:Description rdf:about="#R_MAR03489">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.3"/>
@@ -211301,14 +211338,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00077x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00077x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00078x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01334x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00078x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -211319,7 +211356,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03491" sboTerm="SBO:0000176" id="MAR03491" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03491" sboTerm="SBO:0000176" id="R_MAR03491" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -211328,7 +211365,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03491">
+            <rdf:Description rdf:about="#R_MAR03491">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/5.1.99.4"/>
@@ -211344,16 +211381,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00075x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00075x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00078x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00078x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Amacr"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03493" sboTerm="SBO:0000176" id="MAR03493" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03493" sboTerm="SBO:0000176" id="R_MAR03493" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -211362,7 +211399,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03493">
+            <rdf:Description rdf:about="#R_MAR03493">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.-"/>
@@ -211376,20 +211413,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00075x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01334x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00075x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01371x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02766x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02766x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Fatp1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03498" sboTerm="SBO:0000176" id="MAR03498" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03498" sboTerm="SBO:0000176" id="R_MAR03498" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -211398,7 +211435,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03498">
+            <rdf:Description rdf:about="#R_MAR03498">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.3.6"/>
@@ -211411,12 +211448,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00078x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00078x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02041x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03027x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03027x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -211425,7 +211462,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03501" sboTerm="SBO:0000176" id="MAR03501" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03501" sboTerm="SBO:0000176" id="R_MAR03501" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -211434,7 +211471,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03501">
+            <rdf:Description rdf:about="#R_MAR03501">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.17"/>
@@ -211447,14 +211484,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03027x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03027x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00798x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00798x" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03503" sboTerm="SBO:0000176" id="MAR03503" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03503" sboTerm="SBO:0000176" id="R_MAR03503" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -211463,7 +211500,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03503">
+            <rdf:Description rdf:about="#R_MAR03503">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.35"/>
@@ -211475,19 +211512,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00798x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00798x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00813x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00813x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Mfe2"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03505" sboTerm="SBO:0000176" id="MAR03505" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03505" sboTerm="SBO:0000176" id="R_MAR03505" name="4,8,12-trimethyltridecanoyl-CoA:propanoyl-CoA C2-4,8,12-trimethyltridecanoyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -211496,7 +211533,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03505">
+            <rdf:Description rdf:about="#R_MAR03505">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.154"/>
@@ -211510,18 +211547,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00813x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00813x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00948x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02774x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00948x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02774x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="didum"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03506" sboTerm="SBO:0000176" id="MAR03506" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03506" sboTerm="SBO:0000176" id="R_MAR03506" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -211530,7 +211567,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03506">
+            <rdf:Description rdf:about="#R_MAR03506">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.3.6"/>
@@ -211541,12 +211578,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00948x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00948x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00090x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02041x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00090x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -211555,7 +211592,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03508" sboTerm="SBO:0000176" id="MAR03508" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03508" sboTerm="SBO:0000176" id="R_MAR03508" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -211564,7 +211601,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03508">
+            <rdf:Description rdf:about="#R_MAR03508">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.17"/>
@@ -211575,14 +211612,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00090x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00090x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00686x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00686x" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03509" sboTerm="SBO:0000176" id="MAR03509" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03509" sboTerm="SBO:0000176" id="R_MAR03509" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -211591,7 +211628,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03509">
+            <rdf:Description rdf:about="#R_MAR03509">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.35"/>
@@ -211603,19 +211640,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00686x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00686x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00833x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00833x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Mfe2"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03510" sboTerm="SBO:0000176" id="MAR03510" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03510" sboTerm="SBO:0000176" id="R_MAR03510" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -211624,7 +211661,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03510">
+            <rdf:Description rdf:about="#R_MAR03510">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.16"/>
@@ -211635,18 +211672,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00833x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00833x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00076x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01261x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00076x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="didum"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03511" sboTerm="SBO:0000176" id="MAR03511" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03511" sboTerm="SBO:0000176" id="R_MAR03511" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -211655,7 +211692,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03511">
+            <rdf:Description rdf:about="#R_MAR03511">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/5.1.99.4"/>
@@ -211666,16 +211703,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00076x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00076x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00080x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00080x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Amacr"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03512" sboTerm="SBO:0000176" id="MAR03512" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03512" sboTerm="SBO:0000176" id="R_MAR03512" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -211684,7 +211721,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03512">
+            <rdf:Description rdf:about="#R_MAR03512">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.3.6"/>
@@ -211695,12 +211732,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00080x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00080x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00079x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02041x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00079x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -211709,7 +211746,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03513" sboTerm="SBO:0000176" id="MAR03513" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03513" sboTerm="SBO:0000176" id="R_MAR03513" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -211718,7 +211755,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03513">
+            <rdf:Description rdf:about="#R_MAR03513">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.17"/>
@@ -211729,14 +211766,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00079x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00079x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00685x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00685x" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03514" sboTerm="SBO:0000176" id="MAR03514" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03514" sboTerm="SBO:0000176" id="R_MAR03514" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -211745,7 +211782,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03514">
+            <rdf:Description rdf:about="#R_MAR03514">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.35"/>
@@ -211757,19 +211794,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00685x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00685x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00832x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00832x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Mfe2"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03515" sboTerm="SBO:0000176" id="MAR03515" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03515" sboTerm="SBO:0000176" id="R_MAR03515" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -211778,7 +211815,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03515">
+            <rdf:Description rdf:about="#R_MAR03515">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.154"/>
@@ -211789,18 +211826,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00832x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00832x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00933x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02774x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00933x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02774x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="didum"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03517" sboTerm="SBO:0000185" id="MAR03517" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03517" sboTerm="SBO:0000185" id="R_MAR03517" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -211808,7 +211845,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#meta_MAR03517">
+            <rdf:Description rdf:about="#meta_R_MAR03517">
               <bqbiol:is>
                 <rdf:Bag/>
               </bqbiol:is>
@@ -211816,13 +211853,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00933c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00933c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00933x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00933x" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03301" sboTerm="SBO:0000176" id="MAR03301" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03301" sboTerm="SBO:0000176" id="R_MAR03301" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -211831,7 +211868,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03301">
+            <rdf:Description rdf:about="#R_MAR03301">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.3.6"/>
@@ -211841,12 +211878,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02391x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02391x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02041x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03010x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03010x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -211855,7 +211892,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03302" sboTerm="SBO:0000176" id="MAR03302" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03302" sboTerm="SBO:0000176" id="R_MAR03302" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -211864,7 +211901,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03302">
+            <rdf:Description rdf:about="#R_MAR03302">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.17"/>
@@ -211875,14 +211912,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03010x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03010x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00083x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00083x" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03304" sboTerm="SBO:0000176" id="MAR03304" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03304" sboTerm="SBO:0000176" id="R_MAR03304" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -211891,7 +211928,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03304">
+            <rdf:Description rdf:about="#R_MAR03304">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.35"/>
@@ -211903,19 +211940,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00083x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00083x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00884x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00884x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Mfe2"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03305" sboTerm="SBO:0000176" id="MAR03305" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03305" sboTerm="SBO:0000176" id="R_MAR03305" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -211924,7 +211961,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03305">
+            <rdf:Description rdf:about="#R_MAR03305">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.16"/>
@@ -211935,18 +211972,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00884x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00884x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01577x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01577x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="didum"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03306" sboTerm="SBO:0000176" id="MAR03306" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03306" sboTerm="SBO:0000176" id="R_MAR03306" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -211955,7 +211992,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03306">
+            <rdf:Description rdf:about="#R_MAR03306">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.3.6"/>
@@ -211965,12 +212002,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01577x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01577x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02041x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03009x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03009x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -211979,7 +212016,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03307" sboTerm="SBO:0000176" id="MAR03307" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03307" sboTerm="SBO:0000176" id="R_MAR03307" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -211988,7 +212025,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03307">
+            <rdf:Description rdf:about="#R_MAR03307">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.17"/>
@@ -211999,14 +212036,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03009x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03009x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00081x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00081x" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03309" sboTerm="SBO:0000176" id="MAR03309" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03309" sboTerm="SBO:0000176" id="R_MAR03309" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -212015,7 +212052,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03309">
+            <rdf:Description rdf:about="#R_MAR03309">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.35"/>
@@ -212027,19 +212064,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00081x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00081x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00855x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00855x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Mfe2"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03310" sboTerm="SBO:0000176" id="MAR03310" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03310" sboTerm="SBO:0000176" id="R_MAR03310" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -212048,7 +212085,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03310">
+            <rdf:Description rdf:about="#R_MAR03310">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.16"/>
@@ -212059,18 +212096,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00855x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00855x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01576x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01576x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="didum"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03311" sboTerm="SBO:0000176" id="MAR03311" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03311" sboTerm="SBO:0000176" id="R_MAR03311" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -212079,7 +212116,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03311">
+            <rdf:Description rdf:about="#R_MAR03311">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.3.6"/>
@@ -212089,12 +212126,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01576x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01576x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02041x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03030x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03030x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -212103,7 +212140,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03312" sboTerm="SBO:0000176" id="MAR03312" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03312" sboTerm="SBO:0000176" id="R_MAR03312" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -212112,7 +212149,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03312">
+            <rdf:Description rdf:about="#R_MAR03312">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.17"/>
@@ -212123,14 +212160,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03030x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03030x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00696x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00696x" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03314" sboTerm="SBO:0000176" id="MAR03314" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03314" sboTerm="SBO:0000176" id="R_MAR03314" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -212139,7 +212176,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03314">
+            <rdf:Description rdf:about="#R_MAR03314">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.35"/>
@@ -212151,19 +212188,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00696x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00696x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00854x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00854x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Mfe2"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03315" sboTerm="SBO:0000176" id="MAR03315" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03315" sboTerm="SBO:0000176" id="R_MAR03315" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -212172,7 +212209,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03315">
+            <rdf:Description rdf:about="#R_MAR03315">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.16"/>
@@ -212183,18 +212220,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00854x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00854x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01575x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01575x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="didum"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03316" sboTerm="SBO:0000176" id="MAR03316" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03316" sboTerm="SBO:0000176" id="R_MAR03316" name="cis,cis-3,6-Dodecadienoyl-CoA delta3-cis-delta2-trans-isomerase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -212203,7 +212240,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03316">
+            <rdf:Description rdf:about="#R_MAR03316">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/5.3.3.8"/>
@@ -212217,13 +212254,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01575x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01575x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03021x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03021x" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03317" sboTerm="SBO:0000176" id="MAR03317" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03317" sboTerm="SBO:0000176" id="R_MAR03317" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -212232,7 +212269,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03317">
+            <rdf:Description rdf:about="#R_MAR03317">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.17"/>
@@ -212243,14 +212280,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03021x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03021x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00082x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00082x" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03319" sboTerm="SBO:0000176" id="MAR03319" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03319" sboTerm="SBO:0000176" id="R_MAR03319" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -212258,7 +212295,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03319">
+            <rdf:Description rdf:about="#R_MAR03319">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.35"/>
@@ -212270,19 +212307,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00082x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00082x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00883x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00883x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Mfe2"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03320" sboTerm="SBO:0000176" id="MAR03320" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03320" sboTerm="SBO:0000176" id="R_MAR03320" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -212291,7 +212328,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03320">
+            <rdf:Description rdf:about="#R_MAR03320">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.16"/>
@@ -212302,18 +212339,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00883x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00883x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00980x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01261x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00980x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="didum"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03321" sboTerm="SBO:0000176" id="MAR03321" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03321" sboTerm="SBO:0000176" id="R_MAR03321" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -212322,7 +212359,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03321">
+            <rdf:Description rdf:about="#R_MAR03321">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.3.6"/>
@@ -212333,11 +212370,11 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00980x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00980x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00678x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039x" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM00678x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039x" stoichiometry="2" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -212346,7 +212383,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03323" sboTerm="SBO:0000176" id="MAR03323" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03323" sboTerm="SBO:0000176" id="R_MAR03323" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -212354,7 +212391,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03323">
+            <rdf:Description rdf:about="#R_MAR03323">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/5.3.3.8"/>
@@ -212365,13 +212402,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00039x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00039x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03035x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03035x" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03107" sboTerm="SBO:0000176" id="MAR03107" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03107" sboTerm="SBO:0000176" id="R_MAR03107" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -212379,7 +212416,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03107">
+            <rdf:Description rdf:about="#R_MAR03107">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.8.7"/>
@@ -212393,12 +212430,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01725m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01802m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01725m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01802m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01803m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01803m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -212407,7 +212444,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03108" sboTerm="SBO:0000176" id="MAR03108" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03108" sboTerm="SBO:0000176" id="R_MAR03108" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -212415,7 +212452,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03108">
+            <rdf:Description rdf:about="#R_MAR03108">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.17"/>
@@ -212426,14 +212463,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00776m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00776m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03109" sboTerm="SBO:0000176" id="MAR03109" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03109" sboTerm="SBO:0000176" id="R_MAR03109" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -212441,7 +212478,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03109">
+            <rdf:Description rdf:about="#R_MAR03109">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.35"/>
@@ -212453,16 +212490,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00776m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00776m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00866m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00866m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03110" sboTerm="SBO:0000176" id="MAR03110" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03110" sboTerm="SBO:0000176" id="R_MAR03110" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -212470,7 +212507,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03110">
+            <rdf:Description rdf:about="#R_MAR03110">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.16"/>
@@ -212482,15 +212519,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00866m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00866m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01773m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01773m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03111" sboTerm="SBO:0000176" id="MAR03111" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03111" sboTerm="SBO:0000176" id="R_MAR03111" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -212498,7 +212535,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03111">
+            <rdf:Description rdf:about="#R_MAR03111">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.8.7"/>
@@ -212512,12 +212549,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01773m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01802m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01773m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01802m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00043m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01803m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00043m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01803m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -212526,7 +212563,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03112" sboTerm="SBO:0000176" id="MAR03112" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03112" sboTerm="SBO:0000176" id="R_MAR03112" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -212534,7 +212571,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03112">
+            <rdf:Description rdf:about="#R_MAR03112">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.17"/>
@@ -212545,14 +212582,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00043m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00043m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00777m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00777m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03113" sboTerm="SBO:0000176" id="MAR03113" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03113" sboTerm="SBO:0000176" id="R_MAR03113" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -212560,7 +212597,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03113">
+            <rdf:Description rdf:about="#R_MAR03113">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.35"/>
@@ -212572,16 +212609,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00777m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00777m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00872m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00872m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03114" sboTerm="SBO:0000176" id="MAR03114" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03114" sboTerm="SBO:0000176" id="R_MAR03114" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -212589,7 +212626,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03114">
+            <rdf:Description rdf:about="#R_MAR03114">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.16"/>
@@ -212601,15 +212638,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00872m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00872m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02941m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02941m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03115" sboTerm="SBO:0000176" id="MAR03115" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03115" sboTerm="SBO:0000176" id="R_MAR03115" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -212617,7 +212654,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03115">
+            <rdf:Description rdf:about="#R_MAR03115">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.8.7"/>
@@ -212631,12 +212668,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01802m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02941m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01802m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02941m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00057m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01803m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00057m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01803m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -212645,7 +212682,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03116" sboTerm="SBO:0000176" id="MAR03116" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03116" sboTerm="SBO:0000176" id="R_MAR03116" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -212653,7 +212690,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03116">
+            <rdf:Description rdf:about="#R_MAR03116">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.17"/>
@@ -212667,14 +212704,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00057m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00057m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00793m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00793m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03117" sboTerm="SBO:0000176" id="MAR03117" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03117" sboTerm="SBO:0000176" id="R_MAR03117" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -212682,7 +212719,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03117">
+            <rdf:Description rdf:about="#R_MAR03117">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.35"/>
@@ -212696,16 +212733,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00793m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00793m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00890m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00890m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03118" sboTerm="SBO:0000176" id="MAR03118" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03118" sboTerm="SBO:0000176" id="R_MAR03118" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -212713,7 +212750,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03118">
+            <rdf:Description rdf:about="#R_MAR03118">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.16"/>
@@ -212725,15 +212762,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00890m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00890m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02678m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02678m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03121" sboTerm="SBO:0000176" id="MAR03121" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03121" sboTerm="SBO:0000176" id="R_MAR03121" name="palmitoyl-CoA:electron-transfer flavoprotein 2,3-oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -212742,7 +212779,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03121">
+            <rdf:Description rdf:about="#R_MAR03121">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.8.7"/>
@@ -212759,12 +212796,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01802m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02678m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01802m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02678m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00051m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01803m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00051m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01803m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -212773,7 +212810,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03122" sboTerm="SBO:0000176" id="MAR03122" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03122" sboTerm="SBO:0000176" id="R_MAR03122" name="(S)-3-Hydroxyhexadecanoyl-CoA hydro-lyase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -212782,7 +212819,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03122">
+            <rdf:Description rdf:about="#R_MAR03122">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.17"/>
@@ -212796,14 +212833,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00051m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00051m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00175m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00175m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03123" sboTerm="SBO:0000176" id="MAR03123" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03123" sboTerm="SBO:0000176" id="R_MAR03123" name="(S)-3-Hydroxyhexadecanoyl-CoA:NAD+ oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -212812,7 +212849,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03123">
+            <rdf:Description rdf:about="#R_MAR03123">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.35"/>
@@ -212827,16 +212864,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00175m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00175m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00895m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00895m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03125" sboTerm="SBO:0000176" id="MAR03125" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03125" sboTerm="SBO:0000176" id="R_MAR03125" name="myristoyl-CoA:acetylCoA C-myristoyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -212845,7 +212882,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03125">
+            <rdf:Description rdf:about="#R_MAR03125">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.16"/>
@@ -212859,15 +212896,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00895m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00895m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02495m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02495m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03128" sboTerm="SBO:0000176" id="MAR03128" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03128" sboTerm="SBO:0000176" id="R_MAR03128" name="tetradecanoyl-CoA:electron-transfer flavoprotein 2,3-oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -212876,7 +212913,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03128">
+            <rdf:Description rdf:about="#R_MAR03128">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.8.7"/>
@@ -212893,12 +212930,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01802m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02495m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01802m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02495m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00066m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01803m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00066m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01803m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -212907,7 +212944,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03129" sboTerm="SBO:0000176" id="MAR03129" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03129" sboTerm="SBO:0000176" id="R_MAR03129" name="(S)-3-Hydroxytetradecanoyl-CoA hydro-lyase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -212916,7 +212953,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03129">
+            <rdf:Description rdf:about="#R_MAR03129">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.17"/>
@@ -212930,14 +212967,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00066m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00066m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00178m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00178m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03130" sboTerm="SBO:0000176" id="MAR03130" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03130" sboTerm="SBO:0000176" id="R_MAR03130" name="(S)-3-Hydroxytetradecanoyl-CoA:NAD+ oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -212946,7 +212983,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03130">
+            <rdf:Description rdf:about="#R_MAR03130">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.35"/>
@@ -212960,16 +212997,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00178m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00178m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00906m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00906m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03132" sboTerm="SBO:0000176" id="MAR03132" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03132" sboTerm="SBO:0000176" id="R_MAR03132" name="Lauroyl-CoA:acetyl-CoA C-acyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -212978,7 +213015,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03132">
+            <rdf:Description rdf:about="#R_MAR03132">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.16"/>
@@ -212992,15 +213029,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00906m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00906m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02345m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02345m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03135" sboTerm="SBO:0000176" id="MAR03135" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03135" sboTerm="SBO:0000176" id="R_MAR03135" name="lauroyl-CoA:electron-transfer flavoprotein 2,3-oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -213009,7 +213046,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03135">
+            <rdf:Description rdf:about="#R_MAR03135">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.8.7"/>
@@ -213026,12 +213063,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01802m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02345m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01802m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02345m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00042m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01803m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00042m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01803m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -213040,7 +213077,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03136" sboTerm="SBO:0000176" id="MAR03136" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03136" sboTerm="SBO:0000176" id="R_MAR03136" name="(S)-3-Hydroxydodecanoyl-CoA hydro-lyase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -213049,7 +213086,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03136">
+            <rdf:Description rdf:about="#R_MAR03136">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.17"/>
@@ -213062,14 +213099,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00042m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00042m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00174m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00174m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03137" sboTerm="SBO:0000176" id="MAR03137" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03137" sboTerm="SBO:0000176" id="R_MAR03137" name="(S)-3-hydroxydodecanoyl-CoA:NAD+ oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -213078,7 +213115,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03137">
+            <rdf:Description rdf:about="#R_MAR03137">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.35"/>
@@ -213092,16 +213129,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00174m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00174m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00868m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00868m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03139" sboTerm="SBO:0000176" id="MAR03139" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03139" sboTerm="SBO:0000176" id="R_MAR03139" name="Decanoyl-CoA:acetyl-CoA C-acyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -213110,7 +213147,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03139">
+            <rdf:Description rdf:about="#R_MAR03139">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.16"/>
@@ -213127,15 +213164,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00868m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00868m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01650m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01650m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03142" sboTerm="SBO:0000176" id="MAR03142" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03142" sboTerm="SBO:0000176" id="R_MAR03142" name="decanoyl-CoA:electron-transfer flavoprotein 2,3-oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -213144,7 +213181,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03142">
+            <rdf:Description rdf:about="#R_MAR03142">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.8.7"/>
@@ -213159,18 +213196,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01650m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01802m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01650m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01802m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01803m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01803m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Mcad"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03143" sboTerm="SBO:0000176" id="MAR03143" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03143" sboTerm="SBO:0000176" id="R_MAR03143" name="(S)-Hydroxydecanoyl-CoA hydro-lyase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -213179,7 +213216,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03143">
+            <rdf:Description rdf:about="#R_MAR03143">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.17"/>
@@ -213192,14 +213229,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00181m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00181m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03144" sboTerm="SBO:0000176" id="MAR03144" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03144" sboTerm="SBO:0000176" id="R_MAR03144" name="(S)-hydroxydecanoyl-CoA:NAD+ oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -213208,7 +213245,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03144">
+            <rdf:Description rdf:about="#R_MAR03144">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.35"/>
@@ -213222,16 +213259,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00181m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00181m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00858m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00858m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03146" sboTerm="SBO:0000176" id="MAR03146" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03146" sboTerm="SBO:0000176" id="R_MAR03146" name="Octanoyl-CoA:acetyl-CoA C-acyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -213240,7 +213277,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03146">
+            <rdf:Description rdf:about="#R_MAR03146">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.16"/>
@@ -213256,15 +213293,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00858m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00858m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02644m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02644m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03149" sboTerm="SBO:0000176" id="MAR03149" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03149" sboTerm="SBO:0000176" id="R_MAR03149" name="octanoyl-CoA:electron-transfer flavoprotein 2-oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -213273,7 +213310,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03149">
+            <rdf:Description rdf:about="#R_MAR03149">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.8.7"/>
@@ -213288,18 +213325,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01802m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02644m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01802m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02644m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00059m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01803m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00059m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01803m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Mcad"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03150" sboTerm="SBO:0000176" id="MAR03150" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03150" sboTerm="SBO:0000176" id="R_MAR03150" name="(S)-Hydroxyoctanoyl-CoA hydro-lyase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -213308,7 +213345,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03150">
+            <rdf:Description rdf:about="#R_MAR03150">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.17"/>
@@ -213321,14 +213358,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00059m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00059m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00183m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00183m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03151" sboTerm="SBO:0000176" id="MAR03151" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03151" sboTerm="SBO:0000176" id="R_MAR03151" name="(S)-hydroxyoctanoyl-CoA:NAD+ oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -213337,7 +213374,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03151">
+            <rdf:Description rdf:about="#R_MAR03151">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.35"/>
@@ -213351,16 +213388,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00183m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00183m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00892m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00892m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03153" sboTerm="SBO:0000176" id="MAR03153" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03153" sboTerm="SBO:0000176" id="R_MAR03153" name="Hexanoyl-CoA:acetyl-CoA C-acyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -213369,7 +213406,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03153">
+            <rdf:Description rdf:about="#R_MAR03153">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.16"/>
@@ -213385,15 +213422,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00892m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00892m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02122m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02122m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03156" sboTerm="SBO:0000176" id="MAR03156" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03156" sboTerm="SBO:0000176" id="R_MAR03156" name="hexanoyl-CoA:electron-transfer flavoprotein 2,3-oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -213402,7 +213439,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03156">
+            <rdf:Description rdf:about="#R_MAR03156">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.8.5"/>
@@ -213416,18 +213453,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01802m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02122m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01802m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02122m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00053m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01803m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00053m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01803m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG3902"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03157" sboTerm="SBO:0000176" id="MAR03157" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03157" sboTerm="SBO:0000176" id="R_MAR03157" name="(S)-Hydroxyhexanoyl-CoA hydro-lyase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -213436,7 +213473,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03157">
+            <rdf:Description rdf:about="#R_MAR03157">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.17"/>
@@ -213449,14 +213486,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00053m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00053m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00182m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00182m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03158" sboTerm="SBO:0000176" id="MAR03158" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03158" sboTerm="SBO:0000176" id="R_MAR03158" name="(S)-hydroxyhexanoyl-CoA:NAD+ oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -213465,7 +213502,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03158">
+            <rdf:Description rdf:about="#R_MAR03158">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.35"/>
@@ -213480,16 +213517,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00182m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00182m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00882m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00882m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03160" sboTerm="SBO:0000176" id="MAR03160" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03160" sboTerm="SBO:0000176" id="R_MAR03160" name="butanoyl-CoA:acetyl-CoA C-butanoyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -213498,7 +213535,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03160">
+            <rdf:Description rdf:about="#R_MAR03160">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.16"/>
@@ -213513,15 +213550,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00882m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00882m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01412m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01412m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03398" sboTerm="SBO:0000176" id="MAR03398" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03398" sboTerm="SBO:0000176" id="R_MAR03398" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -213529,7 +213566,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03398">
+            <rdf:Description rdf:about="#R_MAR03398">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.17"/>
@@ -213547,20 +213584,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00129m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597m" stoichiometry="6" constant="true"/>
-          <speciesReference species="MAM01802m" stoichiometry="5" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="6" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="6" constant="true"/>
+          <speciesReference species="M_MAM00129m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="6" constant="true"/>
+          <speciesReference species="M_MAM01802m" stoichiometry="5" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="6" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="6" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261m" stoichiometry="7" constant="true"/>
-          <speciesReference species="MAM01803m" stoichiometry="5" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="6" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="6" constant="true"/>
+          <speciesReference species="M_MAM01261m" stoichiometry="7" constant="true"/>
+          <speciesReference species="M_MAM01803m" stoichiometry="5" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="6" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="6" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03406" sboTerm="SBO:0000176" id="MAR03406" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03406" sboTerm="SBO:0000176" id="R_MAR03406" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -213568,7 +213605,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03406">
+            <rdf:Description rdf:about="#R_MAR03406">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.17"/>
@@ -213586,20 +213623,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00020m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597m" stoichiometry="8" constant="true"/>
-          <speciesReference species="MAM01802m" stoichiometry="7" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="8" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="8" constant="true"/>
+          <speciesReference species="M_MAM00020m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="8" constant="true"/>
+          <speciesReference species="M_MAM01802m" stoichiometry="7" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="8" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="8" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261m" stoichiometry="9" constant="true"/>
-          <speciesReference species="MAM01803m" stoichiometry="7" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="8" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="8" constant="true"/>
+          <speciesReference species="M_MAM01261m" stoichiometry="9" constant="true"/>
+          <speciesReference species="M_MAM01803m" stoichiometry="7" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="8" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="8" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03407" sboTerm="SBO:0000176" id="MAR03407" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03407" sboTerm="SBO:0000176" id="R_MAR03407" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -213607,7 +213644,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03407">
+            <rdf:Description rdf:about="#R_MAR03407">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.17"/>
@@ -213624,20 +213661,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00127m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597m" stoichiometry="8" constant="true"/>
-          <speciesReference species="MAM01802m" stoichiometry="7" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="8" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="8" constant="true"/>
+          <speciesReference species="M_MAM00127m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="8" constant="true"/>
+          <speciesReference species="M_MAM01802m" stoichiometry="7" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="8" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="8" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261m" stoichiometry="9" constant="true"/>
-          <speciesReference species="MAM01803m" stoichiometry="7" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="8" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="8" constant="true"/>
+          <speciesReference species="M_MAM01261m" stoichiometry="9" constant="true"/>
+          <speciesReference species="M_MAM01803m" stoichiometry="7" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="8" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="8" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03408" sboTerm="SBO:0000176" id="MAR03408" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03408" sboTerm="SBO:0000176" id="R_MAR03408" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -213645,7 +213682,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03408">
+            <rdf:Description rdf:about="#R_MAR03408">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.17"/>
@@ -213663,20 +213700,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00116m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597m" stoichiometry="8" constant="true"/>
-          <speciesReference species="MAM01802m" stoichiometry="7" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="8" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="8" constant="true"/>
+          <speciesReference species="M_MAM00116m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="8" constant="true"/>
+          <speciesReference species="M_MAM01802m" stoichiometry="7" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="8" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="8" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261m" stoichiometry="9" constant="true"/>
-          <speciesReference species="MAM01803m" stoichiometry="7" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="8" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="8" constant="true"/>
+          <speciesReference species="M_MAM01261m" stoichiometry="9" constant="true"/>
+          <speciesReference species="M_MAM01803m" stoichiometry="7" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="8" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="8" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03409" sboTerm="SBO:0000176" id="MAR03409" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03409" sboTerm="SBO:0000176" id="R_MAR03409" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -213684,7 +213721,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03409">
+            <rdf:Description rdf:about="#R_MAR03409">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.17"/>
@@ -213701,20 +213738,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00106m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597m" stoichiometry="8" constant="true"/>
-          <speciesReference species="MAM01802m" stoichiometry="6" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="8" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="8" constant="true"/>
+          <speciesReference species="M_MAM00106m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="8" constant="true"/>
+          <speciesReference species="M_MAM01802m" stoichiometry="6" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="8" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="8" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261m" stoichiometry="9" constant="true"/>
-          <speciesReference species="MAM01803m" stoichiometry="6" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="8" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="8" constant="true"/>
+          <speciesReference species="M_MAM01261m" stoichiometry="9" constant="true"/>
+          <speciesReference species="M_MAM01803m" stoichiometry="6" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="8" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="8" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03411" sboTerm="SBO:0000176" id="MAR03411" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03411" sboTerm="SBO:0000176" id="R_MAR03411" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -213722,7 +213759,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03411">
+            <rdf:Description rdf:about="#R_MAR03411">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.17"/>
@@ -213740,20 +213777,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01236m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597m" stoichiometry="9" constant="true"/>
-          <speciesReference species="MAM01802m" stoichiometry="8" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="9" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="9" constant="true"/>
+          <speciesReference species="M_MAM01236m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="9" constant="true"/>
+          <speciesReference species="M_MAM01802m" stoichiometry="8" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="9" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="9" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261m" stoichiometry="10" constant="true"/>
-          <speciesReference species="MAM01803m" stoichiometry="8" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="9" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="9" constant="true"/>
+          <speciesReference species="M_MAM01261m" stoichiometry="10" constant="true"/>
+          <speciesReference species="M_MAM01803m" stoichiometry="8" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="9" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="9" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03413" sboTerm="SBO:0000176" id="MAR03413" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03413" sboTerm="SBO:0000176" id="R_MAR03413" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -213761,7 +213798,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03413">
+            <rdf:Description rdf:about="#R_MAR03413">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.17"/>
@@ -213778,20 +213815,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00123m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597m" stoichiometry="9" constant="true"/>
-          <speciesReference species="MAM01802m" stoichiometry="7" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="9" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="9" constant="true"/>
+          <speciesReference species="M_MAM00123m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="9" constant="true"/>
+          <speciesReference species="M_MAM01802m" stoichiometry="7" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="9" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="9" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261m" stoichiometry="10" constant="true"/>
-          <speciesReference species="MAM01803m" stoichiometry="7" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="9" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="9" constant="true"/>
+          <speciesReference species="M_MAM01261m" stoichiometry="10" constant="true"/>
+          <speciesReference species="M_MAM01803m" stoichiometry="7" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="9" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="9" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03414" sboTerm="SBO:0000176" id="MAR03414" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03414" sboTerm="SBO:0000176" id="R_MAR03414" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -213799,7 +213836,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03414">
+            <rdf:Description rdf:about="#R_MAR03414">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.17"/>
@@ -213816,20 +213853,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00101m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597m" stoichiometry="9" constant="true"/>
-          <speciesReference species="MAM01802m" stoichiometry="6" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="9" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="9" constant="true"/>
+          <speciesReference species="M_MAM00101m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="9" constant="true"/>
+          <speciesReference species="M_MAM01802m" stoichiometry="6" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="9" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="9" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261m" stoichiometry="10" constant="true"/>
-          <speciesReference species="MAM01803m" stoichiometry="6" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="9" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="9" constant="true"/>
+          <speciesReference species="M_MAM01261m" stoichiometry="10" constant="true"/>
+          <speciesReference species="M_MAM01803m" stoichiometry="6" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="9" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="9" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03416" sboTerm="SBO:0000176" id="MAR03416" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03416" sboTerm="SBO:0000176" id="R_MAR03416" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -213837,7 +213874,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03416">
+            <rdf:Description rdf:about="#R_MAR03416">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.17"/>
@@ -213854,20 +213891,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00006m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597m" stoichiometry="10" constant="true"/>
-          <speciesReference species="MAM01802m" stoichiometry="9" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="10" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="10" constant="true"/>
+          <speciesReference species="M_MAM00006m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="10" constant="true"/>
+          <speciesReference species="M_MAM01802m" stoichiometry="9" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="10" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="10" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261m" stoichiometry="11" constant="true"/>
-          <speciesReference species="MAM01803m" stoichiometry="9" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="10" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="10" constant="true"/>
+          <speciesReference species="M_MAM01261m" stoichiometry="11" constant="true"/>
+          <speciesReference species="M_MAM01803m" stoichiometry="9" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="10" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="10" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03421" sboTerm="SBO:0000176" id="MAR03421" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03421" sboTerm="SBO:0000176" id="R_MAR03421" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -213875,7 +213912,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03421">
+            <rdf:Description rdf:about="#R_MAR03421">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.17"/>
@@ -213893,20 +213930,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00119m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597m" stoichiometry="10" constant="true"/>
-          <speciesReference species="MAM01802m" stoichiometry="6" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="10" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="10" constant="true"/>
+          <speciesReference species="M_MAM00119m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="10" constant="true"/>
+          <speciesReference species="M_MAM01802m" stoichiometry="6" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="10" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="10" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261m" stoichiometry="11" constant="true"/>
-          <speciesReference species="MAM01803m" stoichiometry="6" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="10" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="10" constant="true"/>
+          <speciesReference species="M_MAM01261m" stoichiometry="11" constant="true"/>
+          <speciesReference species="M_MAM01803m" stoichiometry="6" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="10" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="10" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03422" sboTerm="SBO:0000176" id="MAR03422" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03422" sboTerm="SBO:0000176" id="R_MAR03422" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -213914,7 +213951,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03422">
+            <rdf:Description rdf:about="#R_MAR03422">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.17"/>
@@ -213931,20 +213968,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00093m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597m" stoichiometry="10" constant="true"/>
-          <speciesReference species="MAM01802m" stoichiometry="5" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="10" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="10" constant="true"/>
+          <speciesReference species="M_MAM00093m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="10" constant="true"/>
+          <speciesReference species="M_MAM01802m" stoichiometry="5" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="10" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="10" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261m" stoichiometry="11" constant="true"/>
-          <speciesReference species="MAM01803m" stoichiometry="5" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="10" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="10" constant="true"/>
+          <speciesReference species="M_MAM01261m" stoichiometry="11" constant="true"/>
+          <speciesReference species="M_MAM01803m" stoichiometry="5" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="10" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="10" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03423" sboTerm="SBO:0000176" id="MAR03423" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03423" sboTerm="SBO:0000176" id="R_MAR03423" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -213952,7 +213989,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03423">
+            <rdf:Description rdf:about="#R_MAR03423">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.17"/>
@@ -213970,20 +214007,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00009m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597m" stoichiometry="9" constant="true"/>
-          <speciesReference species="MAM01802m" stoichiometry="7" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="9" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="9" constant="true"/>
+          <speciesReference species="M_MAM00009m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="9" constant="true"/>
+          <speciesReference species="M_MAM01802m" stoichiometry="7" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="9" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="9" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261m" stoichiometry="10" constant="true"/>
-          <speciesReference species="MAM01803m" stoichiometry="7" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="9" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="9" constant="true"/>
+          <speciesReference species="M_MAM01261m" stoichiometry="10" constant="true"/>
+          <speciesReference species="M_MAM01803m" stoichiometry="7" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="9" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="9" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03424" sboTerm="SBO:0000176" id="MAR03424" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03424" sboTerm="SBO:0000176" id="R_MAR03424" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -213991,7 +214028,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03424">
+            <rdf:Description rdf:about="#R_MAR03424">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.17"/>
@@ -214008,20 +214045,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00023m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597m" stoichiometry="10" constant="true"/>
-          <speciesReference species="MAM01802m" stoichiometry="8" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="10" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="10" constant="true"/>
+          <speciesReference species="M_MAM00023m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="10" constant="true"/>
+          <speciesReference species="M_MAM01802m" stoichiometry="8" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="10" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="10" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261m" stoichiometry="11" constant="true"/>
-          <speciesReference species="MAM01803m" stoichiometry="8" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="10" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="10" constant="true"/>
+          <speciesReference species="M_MAM01261m" stoichiometry="11" constant="true"/>
+          <speciesReference species="M_MAM01803m" stoichiometry="8" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="10" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="10" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03425" sboTerm="SBO:0000176" id="MAR03425" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03425" sboTerm="SBO:0000176" id="R_MAR03425" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -214029,7 +214066,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03425">
+            <rdf:Description rdf:about="#R_MAR03425">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.17"/>
@@ -214046,20 +214083,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00264m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597m" stoichiometry="10" constant="true"/>
-          <speciesReference species="MAM01802m" stoichiometry="7" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="10" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="10" constant="true"/>
+          <speciesReference species="M_MAM00264m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="10" constant="true"/>
+          <speciesReference species="M_MAM01802m" stoichiometry="7" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="10" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="10" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261m" stoichiometry="11" constant="true"/>
-          <speciesReference species="MAM01803m" stoichiometry="7" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="10" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="10" constant="true"/>
+          <speciesReference species="M_MAM01261m" stoichiometry="11" constant="true"/>
+          <speciesReference species="M_MAM01803m" stoichiometry="7" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="10" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="10" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03426" sboTerm="SBO:0000176" id="MAR03426" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03426" sboTerm="SBO:0000176" id="R_MAR03426" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -214067,7 +214104,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03426">
+            <rdf:Description rdf:about="#R_MAR03426">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.17"/>
@@ -214085,20 +214122,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597m" stoichiometry="8" constant="true"/>
-          <speciesReference species="MAM01802m" stoichiometry="5" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="8" constant="true"/>
-          <speciesReference species="MAM02390m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="8" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="8" constant="true"/>
+          <speciesReference species="M_MAM01802m" stoichiometry="5" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="8" constant="true"/>
+          <speciesReference species="M_MAM02390m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="8" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261m" stoichiometry="9" constant="true"/>
-          <speciesReference species="MAM01803m" stoichiometry="5" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="8" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="8" constant="true"/>
+          <speciesReference species="M_MAM01261m" stoichiometry="9" constant="true"/>
+          <speciesReference species="M_MAM01803m" stoichiometry="5" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="8" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="8" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09719" sboTerm="SBO:0000176" id="MAR09719" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09719" sboTerm="SBO:0000176" id="R_MAR09719" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -214106,7 +214143,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09719">
+            <rdf:Description rdf:about="#R_MAR09719">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.17"/>
@@ -214123,20 +214160,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00108m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597m" stoichiometry="8" constant="true"/>
-          <speciesReference species="MAM01802m" stoichiometry="4" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="8" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="8" constant="true"/>
+          <speciesReference species="M_MAM00108m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="8" constant="true"/>
+          <speciesReference species="M_MAM01802m" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="8" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="8" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261m" stoichiometry="9" constant="true"/>
-          <speciesReference species="MAM01803m" stoichiometry="4" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="8" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="8" constant="true"/>
+          <speciesReference species="M_MAM01261m" stoichiometry="9" constant="true"/>
+          <speciesReference species="M_MAM01803m" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="8" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="8" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03427" sboTerm="SBO:0000176" id="MAR03427" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03427" sboTerm="SBO:0000176" id="R_MAR03427" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -214144,7 +214181,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03427">
+            <rdf:Description rdf:about="#R_MAR03427">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.17"/>
@@ -214161,20 +214198,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00125m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597m" stoichiometry="9" constant="true"/>
-          <speciesReference species="MAM01802m" stoichiometry="5" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="9" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="9" constant="true"/>
+          <speciesReference species="M_MAM00125m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="9" constant="true"/>
+          <speciesReference species="M_MAM01802m" stoichiometry="5" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="9" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="9" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261m" stoichiometry="10" constant="true"/>
-          <speciesReference species="MAM01803m" stoichiometry="5" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="9" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="9" constant="true"/>
+          <speciesReference species="M_MAM01261m" stoichiometry="10" constant="true"/>
+          <speciesReference species="M_MAM01803m" stoichiometry="5" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="9" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="9" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03428" sboTerm="SBO:0000176" id="MAR03428" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03428" sboTerm="SBO:0000176" id="R_MAR03428" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -214182,7 +214219,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03428">
+            <rdf:Description rdf:about="#R_MAR03428">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.17"/>
@@ -214199,20 +214236,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00103m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597m" stoichiometry="9" constant="true"/>
-          <speciesReference species="MAM01802m" stoichiometry="4" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="9" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="9" constant="true"/>
+          <speciesReference species="M_MAM00103m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="9" constant="true"/>
+          <speciesReference species="M_MAM01802m" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="9" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="9" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261m" stoichiometry="10" constant="true"/>
-          <speciesReference species="MAM01803m" stoichiometry="4" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="9" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="9" constant="true"/>
+          <speciesReference species="M_MAM01261m" stoichiometry="10" constant="true"/>
+          <speciesReference species="M_MAM01803m" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="9" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="9" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03429" sboTerm="SBO:0000176" id="MAR03429" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03429" sboTerm="SBO:0000176" id="R_MAR03429" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -214220,7 +214257,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03429">
+            <rdf:Description rdf:about="#R_MAR03429">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.17"/>
@@ -214238,20 +214275,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00121m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597m" stoichiometry="10" constant="true"/>
-          <speciesReference species="MAM01802m" stoichiometry="5" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="10" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="10" constant="true"/>
+          <speciesReference species="M_MAM00121m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="10" constant="true"/>
+          <speciesReference species="M_MAM01802m" stoichiometry="5" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="10" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="10" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261m" stoichiometry="11" constant="true"/>
-          <speciesReference species="MAM01803m" stoichiometry="5" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="10" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="10" constant="true"/>
+          <speciesReference species="M_MAM01261m" stoichiometry="11" constant="true"/>
+          <speciesReference species="M_MAM01803m" stoichiometry="5" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="10" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="10" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03430" sboTerm="SBO:0000176" id="MAR03430" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03430" sboTerm="SBO:0000176" id="R_MAR03430" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -214259,7 +214296,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03430">
+            <rdf:Description rdf:about="#R_MAR03430">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.17"/>
@@ -214277,20 +214314,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00095m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597m" stoichiometry="10" constant="true"/>
-          <speciesReference species="MAM01802m" stoichiometry="4" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="10" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="10" constant="true"/>
+          <speciesReference species="M_MAM00095m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="10" constant="true"/>
+          <speciesReference species="M_MAM01802m" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="10" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="10" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261m" stoichiometry="11" constant="true"/>
-          <speciesReference species="MAM01803m" stoichiometry="4" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="10" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="10" constant="true"/>
+          <speciesReference species="M_MAM01261m" stoichiometry="11" constant="true"/>
+          <speciesReference species="M_MAM01803m" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="10" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="10" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03431" sboTerm="SBO:0000176" id="MAR03431" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03431" sboTerm="SBO:0000176" id="R_MAR03431" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -214298,7 +214335,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03431">
+            <rdf:Description rdf:about="#R_MAR03431">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.17"/>
@@ -214315,20 +214352,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00012m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597m" stoichiometry="9" constant="true"/>
-          <speciesReference species="MAM01802m" stoichiometry="6" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="9" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="9" constant="true"/>
+          <speciesReference species="M_MAM00012m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="9" constant="true"/>
+          <speciesReference species="M_MAM01802m" stoichiometry="6" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="9" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="9" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261m" stoichiometry="10" constant="true"/>
-          <speciesReference species="MAM01803m" stoichiometry="6" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="9" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="9" constant="true"/>
+          <speciesReference species="M_MAM01261m" stoichiometry="10" constant="true"/>
+          <speciesReference species="M_MAM01803m" stoichiometry="6" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="9" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="9" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03432" sboTerm="SBO:0000176" id="MAR03432" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03432" sboTerm="SBO:0000176" id="R_MAR03432" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -214336,7 +214373,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03432">
+            <rdf:Description rdf:about="#R_MAR03432">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.17"/>
@@ -214353,20 +214390,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00343m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597m" stoichiometry="10" constant="true"/>
-          <speciesReference species="MAM01802m" stoichiometry="7" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="10" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="10" constant="true"/>
+          <speciesReference species="M_MAM00343m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="10" constant="true"/>
+          <speciesReference species="M_MAM01802m" stoichiometry="7" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="10" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="10" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261m" stoichiometry="11" constant="true"/>
-          <speciesReference species="MAM01803m" stoichiometry="7" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="10" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="10" constant="true"/>
+          <speciesReference species="M_MAM01261m" stoichiometry="11" constant="true"/>
+          <speciesReference species="M_MAM01803m" stoichiometry="7" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="10" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="10" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03433" sboTerm="SBO:0000176" id="MAR03433" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03433" sboTerm="SBO:0000176" id="R_MAR03433" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -214374,7 +214411,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03433">
+            <rdf:Description rdf:about="#R_MAR03433">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.17"/>
@@ -214391,20 +214428,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00262m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597m" stoichiometry="10" constant="true"/>
-          <speciesReference species="MAM01802m" stoichiometry="6" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="10" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="10" constant="true"/>
+          <speciesReference species="M_MAM00262m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="10" constant="true"/>
+          <speciesReference species="M_MAM01802m" stoichiometry="6" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="10" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="10" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261m" stoichiometry="11" constant="true"/>
-          <speciesReference species="MAM01803m" stoichiometry="6" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="10" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="10" constant="true"/>
+          <speciesReference species="M_MAM01261m" stoichiometry="11" constant="true"/>
+          <speciesReference species="M_MAM01803m" stoichiometry="6" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="10" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="10" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03170" sboTerm="SBO:0000176" id="MAR03170" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03170" sboTerm="SBO:0000176" id="R_MAR03170" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -214412,7 +214449,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03170">
+            <rdf:Description rdf:about="#R_MAR03170">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.8.7"/>
@@ -214426,12 +214463,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01802m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02052m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01802m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02052m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00044m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01803m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00044m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01803m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -214440,7 +214477,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03171" sboTerm="SBO:0000176" id="MAR03171" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03171" sboTerm="SBO:0000176" id="R_MAR03171" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -214448,7 +214485,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03171">
+            <rdf:Description rdf:about="#R_MAR03171">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.17"/>
@@ -214459,14 +214496,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00044m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00044m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00778m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00778m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03172" sboTerm="SBO:0000176" id="MAR03172" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03172" sboTerm="SBO:0000176" id="R_MAR03172" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -214474,7 +214511,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03172">
+            <rdf:Description rdf:about="#R_MAR03172">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.35"/>
@@ -214486,16 +214523,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00778m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00778m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00873m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00873m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03173" sboTerm="SBO:0000176" id="MAR03173" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03173" sboTerm="SBO:0000176" id="R_MAR03173" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -214503,7 +214540,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03173">
+            <rdf:Description rdf:about="#R_MAR03173">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.16"/>
@@ -214515,15 +214552,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00873m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00873m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02612m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02612m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03174" sboTerm="SBO:0000176" id="MAR03174" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03174" sboTerm="SBO:0000176" id="R_MAR03174" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -214531,7 +214568,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03174">
+            <rdf:Description rdf:about="#R_MAR03174">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.8.7"/>
@@ -214545,12 +214582,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01802m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02612m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01802m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02612m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00054m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01803m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00054m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01803m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -214559,7 +214596,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03175" sboTerm="SBO:0000176" id="MAR03175" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03175" sboTerm="SBO:0000176" id="R_MAR03175" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -214567,7 +214604,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03175">
+            <rdf:Description rdf:about="#R_MAR03175">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.17"/>
@@ -214578,14 +214615,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00054m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00054m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00790m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00790m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03176" sboTerm="SBO:0000176" id="MAR03176" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03176" sboTerm="SBO:0000176" id="R_MAR03176" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -214593,7 +214630,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03176">
+            <rdf:Description rdf:about="#R_MAR03176">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.35"/>
@@ -214605,16 +214642,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00790m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00790m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00887m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00887m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03177" sboTerm="SBO:0000176" id="MAR03177" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03177" sboTerm="SBO:0000176" id="R_MAR03177" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -214622,7 +214659,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03177">
+            <rdf:Description rdf:about="#R_MAR03177">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.16"/>
@@ -214634,15 +214671,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00887m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00887m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02101m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02101m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03178" sboTerm="SBO:0000176" id="MAR03178" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03178" sboTerm="SBO:0000176" id="R_MAR03178" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -214650,7 +214687,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03178">
+            <rdf:Description rdf:about="#R_MAR03178">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.8.7"/>
@@ -214664,12 +214701,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01802m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02101m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01802m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02101m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00046m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01803m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00046m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01803m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -214678,7 +214715,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03179" sboTerm="SBO:0000176" id="MAR03179" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03179" sboTerm="SBO:0000176" id="R_MAR03179" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -214686,7 +214723,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03179">
+            <rdf:Description rdf:about="#R_MAR03179">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.17"/>
@@ -214697,14 +214734,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00046m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00046m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00780m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00780m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03180" sboTerm="SBO:0000176" id="MAR03180" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03180" sboTerm="SBO:0000176" id="R_MAR03180" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -214712,7 +214749,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03180">
+            <rdf:Description rdf:about="#R_MAR03180">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.35"/>
@@ -214724,16 +214761,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00780m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00780m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00875m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00875m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03181" sboTerm="SBO:0000176" id="MAR03181" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03181" sboTerm="SBO:0000176" id="R_MAR03181" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -214741,7 +214778,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03181">
+            <rdf:Description rdf:about="#R_MAR03181">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.16"/>
@@ -214753,15 +214790,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00875m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00875m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02689m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02689m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03182" sboTerm="SBO:0000176" id="MAR03182" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03182" sboTerm="SBO:0000176" id="R_MAR03182" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -214769,7 +214806,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03182">
+            <rdf:Description rdf:about="#R_MAR03182">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.8.7"/>
@@ -214783,12 +214820,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01802m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02689m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01802m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02689m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00061m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01803m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00061m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01803m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -214797,7 +214834,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03183" sboTerm="SBO:0000176" id="MAR03183" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03183" sboTerm="SBO:0000176" id="R_MAR03183" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -214805,7 +214842,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03183">
+            <rdf:Description rdf:about="#R_MAR03183">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.17"/>
@@ -214816,14 +214853,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00061m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00061m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00795m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00795m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03184" sboTerm="SBO:0000176" id="MAR03184" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03184" sboTerm="SBO:0000176" id="R_MAR03184" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -214831,7 +214868,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03184">
+            <rdf:Description rdf:about="#R_MAR03184">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.35"/>
@@ -214843,16 +214880,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00795m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00795m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00897m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00897m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03185" sboTerm="SBO:0000176" id="MAR03185" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03185" sboTerm="SBO:0000176" id="R_MAR03185" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -214860,7 +214897,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03185">
+            <rdf:Description rdf:about="#R_MAR03185">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.16"/>
@@ -214872,15 +214909,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00897m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00897m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03050m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03050m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03186" sboTerm="SBO:0000176" id="MAR03186" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03186" sboTerm="SBO:0000176" id="R_MAR03186" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -214888,7 +214925,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03186">
+            <rdf:Description rdf:about="#R_MAR03186">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.8.7"/>
@@ -214902,12 +214939,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01802m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03050m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01802m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03050m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00069m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01803m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00069m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01803m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -214916,7 +214953,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03187" sboTerm="SBO:0000176" id="MAR03187" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03187" sboTerm="SBO:0000176" id="R_MAR03187" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -214924,7 +214961,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03187">
+            <rdf:Description rdf:about="#R_MAR03187">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.17"/>
@@ -214935,14 +214972,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00069m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00069m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00804m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00804m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03188" sboTerm="SBO:0000176" id="MAR03188" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03188" sboTerm="SBO:0000176" id="R_MAR03188" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -214950,7 +214987,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03188">
+            <rdf:Description rdf:about="#R_MAR03188">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.35"/>
@@ -214962,16 +214999,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00804m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00804m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00909m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00909m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03189" sboTerm="SBO:0000176" id="MAR03189" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03189" sboTerm="SBO:0000176" id="R_MAR03189" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -214979,7 +215016,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03189">
+            <rdf:Description rdf:about="#R_MAR03189">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.16"/>
@@ -214991,15 +215028,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00909m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00909m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03116m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03116m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03190" sboTerm="SBO:0000176" id="MAR03190" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03190" sboTerm="SBO:0000176" id="R_MAR03190" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -215007,7 +215044,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03190">
+            <rdf:Description rdf:about="#R_MAR03190">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.8.7"/>
@@ -215019,18 +215056,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01802m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03116m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01802m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03116m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00071m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01803m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00071m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01803m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Mcad"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03191" sboTerm="SBO:0000176" id="MAR03191" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03191" sboTerm="SBO:0000176" id="R_MAR03191" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -215038,7 +215075,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03191">
+            <rdf:Description rdf:about="#R_MAR03191">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.17"/>
@@ -215049,14 +215086,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00071m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00071m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00806m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00806m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03192" sboTerm="SBO:0000176" id="MAR03192" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03192" sboTerm="SBO:0000176" id="R_MAR03192" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -215064,7 +215101,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03192">
+            <rdf:Description rdf:about="#R_MAR03192">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.35"/>
@@ -215076,16 +215113,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00806m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00806m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00911m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00911m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03193" sboTerm="SBO:0000176" id="MAR03193" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03193" sboTerm="SBO:0000176" id="R_MAR03193" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -215093,7 +215130,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03193">
+            <rdf:Description rdf:about="#R_MAR03193">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.16"/>
@@ -215105,15 +215142,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00911m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00911m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02616m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02616m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03194" sboTerm="SBO:0000176" id="MAR03194" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03194" sboTerm="SBO:0000176" id="R_MAR03194" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -215121,7 +215158,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03194">
+            <rdf:Description rdf:about="#R_MAR03194">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.8.7"/>
@@ -215133,18 +215170,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01802m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02616m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01802m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02616m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00056m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01803m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00056m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01803m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Mcad"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03195" sboTerm="SBO:0000176" id="MAR03195" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03195" sboTerm="SBO:0000176" id="R_MAR03195" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -215152,7 +215189,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03195">
+            <rdf:Description rdf:about="#R_MAR03195">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.17"/>
@@ -215163,14 +215200,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00056m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00056m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00792m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00792m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03196" sboTerm="SBO:0000176" id="MAR03196" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03196" sboTerm="SBO:0000176" id="R_MAR03196" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -215178,7 +215215,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03196">
+            <rdf:Description rdf:about="#R_MAR03196">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.35"/>
@@ -215190,16 +215227,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00792m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00792m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00889m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00889m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03197" sboTerm="SBO:0000176" id="MAR03197" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03197" sboTerm="SBO:0000176" id="R_MAR03197" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -215207,7 +215244,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03197">
+            <rdf:Description rdf:about="#R_MAR03197">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.16"/>
@@ -215219,15 +215256,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00889m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00889m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02107m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02107m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03198" sboTerm="SBO:0000176" id="MAR03198" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03198" sboTerm="SBO:0000176" id="R_MAR03198" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -215235,7 +215272,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03198">
+            <rdf:Description rdf:about="#R_MAR03198">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.8.7"/>
@@ -215247,18 +215284,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01802m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02107m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01802m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02107m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00048m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01803m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00048m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01803m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Mcad"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03199" sboTerm="SBO:0000176" id="MAR03199" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03199" sboTerm="SBO:0000176" id="R_MAR03199" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -215266,7 +215303,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03199">
+            <rdf:Description rdf:about="#R_MAR03199">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.17"/>
@@ -215277,14 +215314,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00048m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00048m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00782m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00782m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03200" sboTerm="SBO:0000176" id="MAR03200" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03200" sboTerm="SBO:0000176" id="R_MAR03200" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -215292,7 +215329,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03200">
+            <rdf:Description rdf:about="#R_MAR03200">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.35"/>
@@ -215304,16 +215341,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00782m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00782m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00877m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00877m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03201" sboTerm="SBO:0000176" id="MAR03201" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03201" sboTerm="SBO:0000176" id="R_MAR03201" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -215321,7 +215358,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03201">
+            <rdf:Description rdf:about="#R_MAR03201">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.16"/>
@@ -215333,15 +215370,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00877m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00877m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02694m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02694m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03202" sboTerm="SBO:0000176" id="MAR03202" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03202" sboTerm="SBO:0000176" id="R_MAR03202" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -215349,7 +215386,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03202">
+            <rdf:Description rdf:about="#R_MAR03202">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.8.5"/>
@@ -215360,18 +215397,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01802m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02694m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01802m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02694m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00063m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01803m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00063m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01803m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG3902"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03203" sboTerm="SBO:0000176" id="MAR03203" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03203" sboTerm="SBO:0000176" id="R_MAR03203" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -215379,7 +215416,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03203">
+            <rdf:Description rdf:about="#R_MAR03203">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.17"/>
@@ -215390,14 +215427,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00063m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00063m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00797m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00797m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03204" sboTerm="SBO:0000176" id="MAR03204" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03204" sboTerm="SBO:0000176" id="R_MAR03204" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -215405,7 +215442,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03204">
+            <rdf:Description rdf:about="#R_MAR03204">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.35"/>
@@ -215417,16 +215454,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00797m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00797m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00899m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00899m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03205" sboTerm="SBO:0000176" id="MAR03205" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03205" sboTerm="SBO:0000176" id="R_MAR03205" name="acetyl-CoA:propanoyl-CoA 2-C-acetyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -215434,7 +215471,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03205">
+            <rdf:Description rdf:about="#R_MAR03205">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.16"/>
@@ -215447,15 +215484,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00899m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00899m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02774m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02774m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03396" sboTerm="SBO:0000176" id="MAR03396" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03396" sboTerm="SBO:0000176" id="R_MAR03396" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -215463,7 +215500,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03396">
+            <rdf:Description rdf:about="#R_MAR03396">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_3396"/>
@@ -215473,21 +215510,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00004m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597m" stoichiometry="7" constant="true"/>
-          <speciesReference species="MAM01802m" stoichiometry="6" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="7" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="7" constant="true"/>
+          <speciesReference species="M_MAM00004m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="7" constant="true"/>
+          <speciesReference species="M_MAM01802m" stoichiometry="6" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="7" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="7" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261m" stoichiometry="7" constant="true"/>
-          <speciesReference species="MAM01803m" stoichiometry="6" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="7" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="7" constant="true"/>
-          <speciesReference species="MAM02774m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261m" stoichiometry="7" constant="true"/>
+          <speciesReference species="M_MAM01803m" stoichiometry="6" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="7" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="7" constant="true"/>
+          <speciesReference species="M_MAM02774m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03397" sboTerm="SBO:0000176" id="MAR03397" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03397" sboTerm="SBO:0000176" id="R_MAR03397" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -215495,7 +215532,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03397">
+            <rdf:Description rdf:about="#R_MAR03397">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_3397"/>
@@ -215505,21 +215542,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01237m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597m" stoichiometry="7" constant="true"/>
-          <speciesReference species="MAM01802m" stoichiometry="6" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="7" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="7" constant="true"/>
+          <speciesReference species="M_MAM01237m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="7" constant="true"/>
+          <speciesReference species="M_MAM01802m" stoichiometry="6" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="7" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="7" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261m" stoichiometry="7" constant="true"/>
-          <speciesReference species="MAM01803m" stoichiometry="6" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="7" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="7" constant="true"/>
-          <speciesReference species="MAM02774m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261m" stoichiometry="7" constant="true"/>
+          <speciesReference species="M_MAM01803m" stoichiometry="6" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="7" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="7" constant="true"/>
+          <speciesReference species="M_MAM02774m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03240" sboTerm="SBO:0000176" id="MAR03240" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03240" sboTerm="SBO:0000176" id="R_MAR03240" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -215527,7 +215564,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03240">
+            <rdf:Description rdf:about="#R_MAR03240">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.8.7"/>
@@ -215541,12 +215578,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00018m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01802m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00018m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01802m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01803m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03014m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01803m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03014m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -215555,7 +215592,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03241" sboTerm="SBO:0000176" id="MAR03241" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03241" sboTerm="SBO:0000176" id="R_MAR03241" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -215563,7 +215600,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03241">
+            <rdf:Description rdf:about="#R_MAR03241">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.17"/>
@@ -215574,14 +215611,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03014m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03014m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00702m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00702m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03242" sboTerm="SBO:0000176" id="MAR03242" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03242" sboTerm="SBO:0000176" id="R_MAR03242" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -215589,7 +215626,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03242">
+            <rdf:Description rdf:about="#R_MAR03242">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.35"/>
@@ -215601,16 +215638,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00702m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00702m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00843m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00843m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03243" sboTerm="SBO:0000176" id="MAR03243" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03243" sboTerm="SBO:0000176" id="R_MAR03243" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -215618,7 +215655,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03243">
+            <rdf:Description rdf:about="#R_MAR03243">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.16"/>
@@ -215630,15 +215667,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00843m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00843m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01586m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01586m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03244" sboTerm="SBO:0000176" id="MAR03244" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03244" sboTerm="SBO:0000176" id="R_MAR03244" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -215646,7 +215683,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03244">
+            <rdf:Description rdf:about="#R_MAR03244">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.8.7"/>
@@ -215660,12 +215697,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01586m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01802m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01586m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01802m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01803m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03024m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01803m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03024m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -215674,7 +215711,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03245" sboTerm="SBO:0000176" id="MAR03245" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03245" sboTerm="SBO:0000176" id="R_MAR03245" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -215682,7 +215719,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03245">
+            <rdf:Description rdf:about="#R_MAR03245">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.17"/>
@@ -215693,14 +215730,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03024m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03024m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00170m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00170m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03246" sboTerm="SBO:0000176" id="MAR03246" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03246" sboTerm="SBO:0000176" id="R_MAR03246" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -215708,7 +215745,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03246">
+            <rdf:Description rdf:about="#R_MAR03246">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.35"/>
@@ -215720,16 +215757,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00170m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00170m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00841m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00841m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03247" sboTerm="SBO:0000176" id="MAR03247" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03247" sboTerm="SBO:0000176" id="R_MAR03247" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -215737,7 +215774,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03247">
+            <rdf:Description rdf:about="#R_MAR03247">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.16"/>
@@ -215749,15 +215786,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00841m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00841m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02677m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02677m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03250" sboTerm="SBO:0000176" id="MAR03250" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03250" sboTerm="SBO:0000176" id="R_MAR03250" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -215766,7 +215803,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03250">
+            <rdf:Description rdf:about="#R_MAR03250">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.8.7"/>
@@ -215780,12 +215817,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01802m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02677m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01802m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02677m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01803m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03020m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01803m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03020m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -215794,7 +215831,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03252" sboTerm="SBO:0000176" id="MAR03252" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03252" sboTerm="SBO:0000176" id="R_MAR03252" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -215803,7 +215840,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03252">
+            <rdf:Description rdf:about="#R_MAR03252">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.17"/>
@@ -215814,14 +215851,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03020m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03020m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00177m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00177m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03254" sboTerm="SBO:0000176" id="MAR03254" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03254" sboTerm="SBO:0000176" id="R_MAR03254" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -215830,7 +215867,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03254">
+            <rdf:Description rdf:about="#R_MAR03254">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.35"/>
@@ -215842,16 +215879,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00177m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00177m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00894m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00894m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03256" sboTerm="SBO:0000176" id="MAR03256" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03256" sboTerm="SBO:0000176" id="R_MAR03256" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -215860,7 +215897,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03256">
+            <rdf:Description rdf:about="#R_MAR03256">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.16"/>
@@ -215873,15 +215910,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00894m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00894m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00118m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01261m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00118m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03258" sboTerm="SBO:0000176" id="MAR03258" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03258" sboTerm="SBO:0000176" id="R_MAR03258" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -215890,7 +215927,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03258">
+            <rdf:Description rdf:about="#R_MAR03258">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.8.7"/>
@@ -215905,12 +215942,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00118m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01802m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00118m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01802m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01803m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03023m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01803m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03023m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -215919,7 +215956,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03260" sboTerm="SBO:0000176" id="MAR03260" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03260" sboTerm="SBO:0000176" id="R_MAR03260" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -215928,7 +215965,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03260">
+            <rdf:Description rdf:about="#R_MAR03260">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.17"/>
@@ -215939,14 +215976,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03023m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03023m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01574m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01574m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03262" sboTerm="SBO:0000176" id="MAR03262" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03262" sboTerm="SBO:0000176" id="R_MAR03262" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -215955,7 +215992,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03262">
+            <rdf:Description rdf:about="#R_MAR03262">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.35"/>
@@ -215967,16 +216004,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01574m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01574m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00886m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00886m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03264" sboTerm="SBO:0000176" id="MAR03264" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03264" sboTerm="SBO:0000176" id="R_MAR03264" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -215985,7 +216022,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03264">
+            <rdf:Description rdf:about="#R_MAR03264">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.16"/>
@@ -215998,15 +216035,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00886m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00886m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00099m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01261m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00099m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03272" sboTerm="SBO:0000176" id="MAR03272" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03272" sboTerm="SBO:0000176" id="R_MAR03272" name="3-cis-Dodecenoyl-CoA delta3-cis-delta2-trans-isomerase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -216015,7 +216052,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03272">
+            <rdf:Description rdf:about="#R_MAR03272">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/5.3.3.8"/>
@@ -216031,10 +216068,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00042m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00042m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00099m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00099m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -216044,7 +216081,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03356" sboTerm="SBO:0000176" id="MAR03356" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03356" sboTerm="SBO:0000176" id="R_MAR03356" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -216052,7 +216089,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03356">
+            <rdf:Description rdf:about="#R_MAR03356">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.3.6"/>
@@ -216063,12 +216100,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00018x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00018x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02041x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03014x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03014x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -216077,7 +216114,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03357" sboTerm="SBO:0000176" id="MAR03357" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03357" sboTerm="SBO:0000176" id="R_MAR03357" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -216085,7 +216122,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03357">
+            <rdf:Description rdf:about="#R_MAR03357">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.17"/>
@@ -216096,14 +216133,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03014x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03014x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00702x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00702x" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03358" sboTerm="SBO:0000176" id="MAR03358" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03358" sboTerm="SBO:0000176" id="R_MAR03358" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -216111,7 +216148,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03358">
+            <rdf:Description rdf:about="#R_MAR03358">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.35"/>
@@ -216123,19 +216160,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00702x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00702x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00843x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00843x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Mfe2"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03359" sboTerm="SBO:0000176" id="MAR03359" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03359" sboTerm="SBO:0000176" id="R_MAR03359" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -216143,7 +216180,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03359">
+            <rdf:Description rdf:about="#R_MAR03359">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.16"/>
@@ -216154,18 +216191,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00843x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00843x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01586x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01586x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="didum"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03360" sboTerm="SBO:0000176" id="MAR03360" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03360" sboTerm="SBO:0000176" id="R_MAR03360" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -216173,7 +216210,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03360">
+            <rdf:Description rdf:about="#R_MAR03360">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.3.6"/>
@@ -216184,12 +216221,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01586x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01586x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02041x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03024x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03024x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -216198,7 +216235,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03361" sboTerm="SBO:0000176" id="MAR03361" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03361" sboTerm="SBO:0000176" id="R_MAR03361" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -216206,7 +216243,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03361">
+            <rdf:Description rdf:about="#R_MAR03361">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.17"/>
@@ -216217,14 +216254,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03024x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03024x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00170x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00170x" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03362" sboTerm="SBO:0000176" id="MAR03362" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03362" sboTerm="SBO:0000176" id="R_MAR03362" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -216232,7 +216269,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03362">
+            <rdf:Description rdf:about="#R_MAR03362">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.35"/>
@@ -216244,19 +216281,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00170x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00170x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00841x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00841x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Mfe2"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03363" sboTerm="SBO:0000176" id="MAR03363" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03363" sboTerm="SBO:0000176" id="R_MAR03363" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -216264,7 +216301,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03363">
+            <rdf:Description rdf:about="#R_MAR03363">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.16"/>
@@ -216275,18 +216312,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00841x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00841x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02677x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02677x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="didum"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03218" sboTerm="SBO:0000176" id="MAR03218" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03218" sboTerm="SBO:0000176" id="R_MAR03218" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -216294,7 +216331,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03218">
+            <rdf:Description rdf:about="#R_MAR03218">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.8.7"/>
@@ -216308,12 +216345,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00016m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01802m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00016m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01802m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01803m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03013m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01803m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03013m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -216322,7 +216359,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03219" sboTerm="SBO:0000176" id="MAR03219" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03219" sboTerm="SBO:0000176" id="R_MAR03219" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -216330,7 +216367,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03219">
+            <rdf:Description rdf:about="#R_MAR03219">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.17"/>
@@ -216341,14 +216378,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03013m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03013m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00701m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00701m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03220" sboTerm="SBO:0000176" id="MAR03220" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03220" sboTerm="SBO:0000176" id="R_MAR03220" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -216356,7 +216393,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03220">
+            <rdf:Description rdf:about="#R_MAR03220">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.35"/>
@@ -216368,16 +216405,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00701m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00701m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00842m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00842m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03221" sboTerm="SBO:0000176" id="MAR03221" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03221" sboTerm="SBO:0000176" id="R_MAR03221" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -216385,7 +216422,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03221">
+            <rdf:Description rdf:about="#R_MAR03221">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.16"/>
@@ -216397,15 +216434,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00842m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00842m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00007m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01261m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00007m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03222" sboTerm="SBO:0000176" id="MAR03222" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03222" sboTerm="SBO:0000176" id="R_MAR03222" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -216413,7 +216450,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03222">
+            <rdf:Description rdf:about="#R_MAR03222">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.8.7"/>
@@ -216427,12 +216464,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00007m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01802m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00007m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01802m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01803m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03012m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01803m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03012m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -216441,7 +216478,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03223" sboTerm="SBO:0000176" id="MAR03223" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03223" sboTerm="SBO:0000176" id="R_MAR03223" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -216449,7 +216486,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03223">
+            <rdf:Description rdf:about="#R_MAR03223">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.17"/>
@@ -216460,14 +216497,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03012m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03012m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00700m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00700m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03224" sboTerm="SBO:0000176" id="MAR03224" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03224" sboTerm="SBO:0000176" id="R_MAR03224" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -216475,7 +216512,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03224">
+            <rdf:Description rdf:about="#R_MAR03224">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.35"/>
@@ -216487,16 +216524,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00700m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00700m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00840m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00840m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03225" sboTerm="SBO:0000176" id="MAR03225" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03225" sboTerm="SBO:0000176" id="R_MAR03225" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -216504,7 +216541,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03225">
+            <rdf:Description rdf:about="#R_MAR03225">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.16"/>
@@ -216516,15 +216553,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00840m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00840m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02647m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02647m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03226" sboTerm="SBO:0000176" id="MAR03226" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03226" sboTerm="SBO:0000176" id="R_MAR03226" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -216532,7 +216569,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03226">
+            <rdf:Description rdf:about="#R_MAR03226">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.8.7"/>
@@ -216546,12 +216583,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01802m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02647m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01802m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02647m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01803m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03025m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01803m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03025m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -216560,7 +216597,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03227" sboTerm="SBO:0000176" id="MAR03227" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03227" sboTerm="SBO:0000176" id="R_MAR03227" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -216568,7 +216605,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03227">
+            <rdf:Description rdf:about="#R_MAR03227">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.17"/>
@@ -216579,14 +216616,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03025m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03025m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00176m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00176m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03228" sboTerm="SBO:0000176" id="MAR03228" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03228" sboTerm="SBO:0000176" id="R_MAR03228" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -216594,7 +216631,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03228">
+            <rdf:Description rdf:about="#R_MAR03228">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.35"/>
@@ -216606,16 +216643,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00176m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00176m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00893m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00893m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03229" sboTerm="SBO:0000176" id="MAR03229" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03229" sboTerm="SBO:0000176" id="R_MAR03229" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -216623,7 +216660,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03229">
+            <rdf:Description rdf:about="#R_MAR03229">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.16"/>
@@ -216635,15 +216672,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00893m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00893m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01191m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01261m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01191m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03230" sboTerm="SBO:0000176" id="MAR03230" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03230" sboTerm="SBO:0000176" id="R_MAR03230" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -216652,7 +216689,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03230">
+            <rdf:Description rdf:about="#R_MAR03230">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.8.7"/>
@@ -216666,12 +216703,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01191m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01802m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01191m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01802m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01803m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03019m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01803m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03019m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -216680,7 +216717,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03231" sboTerm="SBO:0000176" id="MAR03231" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03231" sboTerm="SBO:0000176" id="R_MAR03231" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -216689,7 +216726,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03231">
+            <rdf:Description rdf:about="#R_MAR03231">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.17"/>
@@ -216700,14 +216737,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03019m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03019m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00172m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00172m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03232" sboTerm="SBO:0000176" id="MAR03232" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03232" sboTerm="SBO:0000176" id="R_MAR03232" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -216716,7 +216753,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03232">
+            <rdf:Description rdf:about="#R_MAR03232">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.35"/>
@@ -216728,16 +216765,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00172m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00172m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00849m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00849m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03233" sboTerm="SBO:0000176" id="MAR03233" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03233" sboTerm="SBO:0000176" id="R_MAR03233" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -216746,7 +216783,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03233">
+            <rdf:Description rdf:about="#R_MAR03233">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.16"/>
@@ -216758,15 +216795,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00849m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00849m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01141m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01261m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01141m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03234" sboTerm="SBO:0000176" id="MAR03234" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03234" sboTerm="SBO:0000176" id="R_MAR03234" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -216775,7 +216812,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03234">
+            <rdf:Description rdf:about="#R_MAR03234">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.8.7"/>
@@ -216789,12 +216826,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01141m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01802m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01141m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01802m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01803m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03022m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01803m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03022m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -216803,7 +216840,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03235" sboTerm="SBO:0000176" id="MAR03235" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03235" sboTerm="SBO:0000176" id="R_MAR03235" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -216812,7 +216849,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03235">
+            <rdf:Description rdf:about="#R_MAR03235">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.17"/>
@@ -216823,14 +216860,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03022m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03022m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01573m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01573m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03236" sboTerm="SBO:0000176" id="MAR03236" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03236" sboTerm="SBO:0000176" id="R_MAR03236" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -216839,7 +216876,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03236">
+            <rdf:Description rdf:about="#R_MAR03236">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.35"/>
@@ -216851,16 +216888,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01573m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01573m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00885m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00885m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03237" sboTerm="SBO:0000176" id="MAR03237" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03237" sboTerm="SBO:0000176" id="R_MAR03237" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -216869,7 +216906,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03237">
+            <rdf:Description rdf:about="#R_MAR03237">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.16"/>
@@ -216881,15 +216918,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00885m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00885m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00088m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01261m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00088m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03239" sboTerm="SBO:0000176" id="MAR03239" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03239" sboTerm="SBO:0000176" id="R_MAR03239" name="3-cis-Dodecenoyl-CoA delta3-cis-delta2-trans-isomerase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -216898,7 +216935,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03239">
+            <rdf:Description rdf:about="#R_MAR03239">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/5.3.3.8"/>
@@ -216915,10 +216952,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00042m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00042m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00088m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00088m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -216928,7 +216965,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03275" sboTerm="SBO:0000176" id="MAR03275" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03275" sboTerm="SBO:0000176" id="R_MAR03275" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -216937,7 +216974,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03275">
+            <rdf:Description rdf:about="#R_MAR03275">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.8.7"/>
@@ -216953,12 +216990,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01802m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02391m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01802m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02391m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01803m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03010m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01803m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03010m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -216967,7 +217004,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03277" sboTerm="SBO:0000176" id="MAR03277" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03277" sboTerm="SBO:0000176" id="R_MAR03277" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -216976,7 +217013,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03277">
+            <rdf:Description rdf:about="#R_MAR03277">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.17"/>
@@ -216987,14 +217024,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03010m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03010m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00083m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00083m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03278" sboTerm="SBO:0000176" id="MAR03278" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03278" sboTerm="SBO:0000176" id="R_MAR03278" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -217003,7 +217040,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03278">
+            <rdf:Description rdf:about="#R_MAR03278">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.35"/>
@@ -217015,16 +217052,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00083m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00083m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00884m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00884m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03279" sboTerm="SBO:0000176" id="MAR03279" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03279" sboTerm="SBO:0000176" id="R_MAR03279" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -217033,7 +217070,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03279">
+            <rdf:Description rdf:about="#R_MAR03279">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.16"/>
@@ -217045,15 +217082,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00884m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00884m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01577m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01577m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03280" sboTerm="SBO:0000176" id="MAR03280" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03280" sboTerm="SBO:0000176" id="R_MAR03280" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -217062,7 +217099,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03280">
+            <rdf:Description rdf:about="#R_MAR03280">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.8.7"/>
@@ -217076,12 +217113,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01577m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01802m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01577m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01802m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01803m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03009m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01803m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03009m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -217090,7 +217127,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03281" sboTerm="SBO:0000176" id="MAR03281" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03281" sboTerm="SBO:0000176" id="R_MAR03281" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -217099,7 +217136,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03281">
+            <rdf:Description rdf:about="#R_MAR03281">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.17"/>
@@ -217110,14 +217147,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03009m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03009m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00081m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00081m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03282" sboTerm="SBO:0000176" id="MAR03282" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03282" sboTerm="SBO:0000176" id="R_MAR03282" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -217126,7 +217163,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03282">
+            <rdf:Description rdf:about="#R_MAR03282">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.35"/>
@@ -217138,16 +217175,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00081m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00081m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00855m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00855m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03283" sboTerm="SBO:0000176" id="MAR03283" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03283" sboTerm="SBO:0000176" id="R_MAR03283" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -217156,7 +217193,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03283">
+            <rdf:Description rdf:about="#R_MAR03283">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.16"/>
@@ -217168,15 +217205,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00855m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00855m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01576m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01576m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03284" sboTerm="SBO:0000176" id="MAR03284" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03284" sboTerm="SBO:0000176" id="R_MAR03284" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -217185,7 +217222,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03284">
+            <rdf:Description rdf:about="#R_MAR03284">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.8.7"/>
@@ -217199,12 +217236,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01576m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01802m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01576m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01802m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01803m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03030m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01803m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03030m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -217213,7 +217250,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03285" sboTerm="SBO:0000176" id="MAR03285" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03285" sboTerm="SBO:0000176" id="R_MAR03285" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -217221,7 +217258,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03285">
+            <rdf:Description rdf:about="#R_MAR03285">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.17"/>
@@ -217232,14 +217269,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03030m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03030m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00696m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00696m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03286" sboTerm="SBO:0000176" id="MAR03286" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03286" sboTerm="SBO:0000176" id="R_MAR03286" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -217247,7 +217284,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03286">
+            <rdf:Description rdf:about="#R_MAR03286">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.35"/>
@@ -217259,16 +217296,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00696m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00696m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00854m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00854m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03287" sboTerm="SBO:0000176" id="MAR03287" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03287" sboTerm="SBO:0000176" id="R_MAR03287" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -217276,7 +217313,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03287">
+            <rdf:Description rdf:about="#R_MAR03287">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.16"/>
@@ -217288,15 +217325,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00854m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00854m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01575m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01575m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03288" sboTerm="SBO:0000176" id="MAR03288" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03288" sboTerm="SBO:0000176" id="R_MAR03288" name="cis,cis-3,6-Dodecadienoyl-CoA delta3-cis-delta2-trans-isomerase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 2</p>
@@ -217305,7 +217342,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03288">
+            <rdf:Description rdf:about="#R_MAR03288">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/5.3.3.8"/>
@@ -217321,10 +217358,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01575m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01575m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03021m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03021m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -217334,7 +217371,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03290" sboTerm="SBO:0000176" id="MAR03290" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03290" sboTerm="SBO:0000176" id="R_MAR03290" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -217343,7 +217380,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03290">
+            <rdf:Description rdf:about="#R_MAR03290">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.17"/>
@@ -217356,14 +217393,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03021m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03021m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00082m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00082m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03292" sboTerm="SBO:0000176" id="MAR03292" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03292" sboTerm="SBO:0000176" id="R_MAR03292" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -217371,7 +217408,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03292">
+            <rdf:Description rdf:about="#R_MAR03292">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.35"/>
@@ -217383,16 +217420,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00082m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00082m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00883m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00883m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03293" sboTerm="SBO:0000176" id="MAR03293" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03293" sboTerm="SBO:0000176" id="R_MAR03293" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -217401,7 +217438,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03293">
+            <rdf:Description rdf:about="#R_MAR03293">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.16"/>
@@ -217413,15 +217450,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00883m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00883m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00980m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01261m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00980m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03294" sboTerm="SBO:0000176" id="MAR03294" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03294" sboTerm="SBO:0000176" id="R_MAR03294" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -217430,7 +217467,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03294">
+            <rdf:Description rdf:about="#R_MAR03294">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.8.7"/>
@@ -217444,12 +217481,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00980m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01802m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00980m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01802m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00678m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01803m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00678m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01803m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -217458,7 +217495,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03298" sboTerm="SBO:0000176" id="MAR03298" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03298" sboTerm="SBO:0000176" id="R_MAR03298" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -217467,7 +217504,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03298">
+            <rdf:Description rdf:about="#R_MAR03298">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/5.3.3.8"/>
@@ -217481,10 +217518,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00039m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03035m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03035m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -217493,7 +217530,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01174" sboTerm="SBO:0000176" id="MAR01174" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01174" sboTerm="SBO:0000176" id="R_MAR01174" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -217502,7 +217539,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01174">
+            <rdf:Description rdf:about="#R_MAR01174">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.16"/>
@@ -217514,15 +217551,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00835m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00835m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01201m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01261m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01201m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01175" sboTerm="SBO:0000176" id="MAR01175" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01175" sboTerm="SBO:0000176" id="R_MAR01175" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -217531,7 +217568,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01175">
+            <rdf:Description rdf:about="#R_MAR01175">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.3.6"/>
@@ -217542,12 +217579,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01201m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01201m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01199m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02041m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01199m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -217556,7 +217593,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01177" sboTerm="SBO:0000176" id="MAR01177" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01177" sboTerm="SBO:0000176" id="R_MAR01177" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -217565,7 +217602,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01177">
+            <rdf:Description rdf:about="#R_MAR01177">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.17"/>
@@ -217576,14 +217613,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01200m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01200m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00694m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00694m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01178" sboTerm="SBO:0000176" id="MAR01178" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01178" sboTerm="SBO:0000176" id="R_MAR01178" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -217592,7 +217629,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01178">
+            <rdf:Description rdf:about="#R_MAR01178">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.35"/>
@@ -217604,16 +217641,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00694m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00694m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00850m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00850m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01179" sboTerm="SBO:0000176" id="MAR01179" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01179" sboTerm="SBO:0000176" id="R_MAR01179" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -217622,7 +217659,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01179">
+            <rdf:Description rdf:about="#R_MAR01179">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.16"/>
@@ -217634,15 +217671,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00850m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00850m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01146m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01261m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01146m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01180" sboTerm="SBO:0000176" id="MAR01180" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01180" sboTerm="SBO:0000176" id="R_MAR01180" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -217651,7 +217688,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01180">
+            <rdf:Description rdf:about="#R_MAR01180">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.3.6"/>
@@ -217662,12 +217699,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01146m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01146m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01144m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02041m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01144m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -217676,7 +217713,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01182" sboTerm="SBO:0000176" id="MAR01182" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01182" sboTerm="SBO:0000176" id="R_MAR01182" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -217685,7 +217722,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01182">
+            <rdf:Description rdf:about="#R_MAR01182">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.17"/>
@@ -217696,14 +217733,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01145m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01145m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00692m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00692m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01183" sboTerm="SBO:0000176" id="MAR01183" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01183" sboTerm="SBO:0000176" id="R_MAR01183" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -217712,7 +217749,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01183">
+            <rdf:Description rdf:about="#R_MAR01183">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.35"/>
@@ -217724,16 +217761,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00692m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00692m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00847m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00847m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01184" sboTerm="SBO:0000176" id="MAR01184" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01184" sboTerm="SBO:0000176" id="R_MAR01184" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -217742,7 +217779,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01184">
+            <rdf:Description rdf:about="#R_MAR01184">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.16"/>
@@ -217754,15 +217791,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00847m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00847m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00935m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01261m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00935m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01216" sboTerm="SBO:0000176" id="MAR01216" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01216" sboTerm="SBO:0000176" id="R_MAR01216" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -217771,7 +217808,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01216">
+            <rdf:Description rdf:about="#R_MAR01216">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.16"/>
@@ -217783,15 +217820,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00837m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00837m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01206m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01261m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01206m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01217" sboTerm="SBO:0000176" id="MAR01217" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01217" sboTerm="SBO:0000176" id="R_MAR01217" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -217800,7 +217837,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01217">
+            <rdf:Description rdf:about="#R_MAR01217">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.3.6"/>
@@ -217811,12 +217848,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01206m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01206m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01204m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02041m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01204m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -217825,7 +217862,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01219" sboTerm="SBO:0000176" id="MAR01219" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01219" sboTerm="SBO:0000176" id="R_MAR01219" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -217834,7 +217871,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01219">
+            <rdf:Description rdf:about="#R_MAR01219">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.17"/>
@@ -217845,14 +217882,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00695m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00695m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01205m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01205m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01220" sboTerm="SBO:0000176" id="MAR01220" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01220" sboTerm="SBO:0000176" id="R_MAR01220" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -217861,7 +217898,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01220">
+            <rdf:Description rdf:about="#R_MAR01220">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.35"/>
@@ -217873,16 +217910,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00695m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00695m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00851m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00851m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01221" sboTerm="SBO:0000176" id="MAR01221" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01221" sboTerm="SBO:0000176" id="R_MAR01221" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -217891,7 +217928,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01221">
+            <rdf:Description rdf:about="#R_MAR01221">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.16"/>
@@ -217903,15 +217940,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00851m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00851m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01149m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01261m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01149m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01223" sboTerm="SBO:0000176" id="MAR01223" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01223" sboTerm="SBO:0000176" id="R_MAR01223" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -217920,7 +217957,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01223">
+            <rdf:Description rdf:about="#R_MAR01223">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.3.6"/>
@@ -217931,12 +217968,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01149m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01149m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01147m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02041m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01147m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -217945,7 +217982,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01224" sboTerm="SBO:0000176" id="MAR01224" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01224" sboTerm="SBO:0000176" id="R_MAR01224" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -217954,7 +217991,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01224">
+            <rdf:Description rdf:about="#R_MAR01224">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.17"/>
@@ -217965,14 +218002,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01148m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01148m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00693m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00693m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01225" sboTerm="SBO:0000176" id="MAR01225" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01225" sboTerm="SBO:0000176" id="R_MAR01225" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -217981,7 +218018,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01225">
+            <rdf:Description rdf:about="#R_MAR01225">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.35"/>
@@ -217993,16 +218030,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00693m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00693m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00848m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00848m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01226" sboTerm="SBO:0000176" id="MAR01226" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01226" sboTerm="SBO:0000176" id="R_MAR01226" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -218011,7 +218048,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01226">
+            <rdf:Description rdf:about="#R_MAR01226">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.16"/>
@@ -218023,15 +218060,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00848m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00848m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00936m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01261m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00936m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03522" sboTerm="SBO:0000176" id="MAR03522" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03522" sboTerm="SBO:0000176" id="R_MAR03522" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -218040,7 +218077,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03522">
+            <rdf:Description rdf:about="#R_MAR03522">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.8.7"/>
@@ -218053,18 +218090,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00933m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01802m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00933m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01802m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00934m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01803m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00934m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01803m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Mcad"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03523" sboTerm="SBO:0000176" id="MAR03523" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03523" sboTerm="SBO:0000176" id="R_MAR03523" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -218073,7 +218110,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03523">
+            <rdf:Description rdf:about="#R_MAR03523">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.17"/>
@@ -218084,14 +218121,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00934m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00934m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00705m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00705m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03524" sboTerm="SBO:0000176" id="MAR03524" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03524" sboTerm="SBO:0000176" id="R_MAR03524" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -218100,7 +218137,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03524">
+            <rdf:Description rdf:about="#R_MAR03524">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.35"/>
@@ -218112,16 +218149,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00705m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00705m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00844m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00844m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03525" sboTerm="SBO:0000176" id="MAR03525" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03525" sboTerm="SBO:0000176" id="R_MAR03525" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -218130,7 +218167,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03525">
+            <rdf:Description rdf:about="#R_MAR03525">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.16"/>
@@ -218142,15 +218179,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00844m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00844m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00562m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01261m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00562m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03526" sboTerm="SBO:0000176" id="MAR03526" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03526" sboTerm="SBO:0000176" id="R_MAR03526" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -218159,7 +218196,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03526">
+            <rdf:Description rdf:about="#R_MAR03526">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/5.1.99.4"/>
@@ -218170,16 +218207,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00562m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00562m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00563m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00563m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Amacr"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03527" sboTerm="SBO:0000176" id="MAR03527" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03527" sboTerm="SBO:0000176" id="R_MAR03527" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -218188,7 +218225,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03527">
+            <rdf:Description rdf:about="#R_MAR03527">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.8.7"/>
@@ -218200,18 +218237,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00563m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01802m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00563m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01802m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00578m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01803m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00578m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01803m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Mcad"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03528" sboTerm="SBO:0000176" id="MAR03528" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03528" sboTerm="SBO:0000176" id="R_MAR03528" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -218220,7 +218257,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03528">
+            <rdf:Description rdf:about="#R_MAR03528">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.17"/>
@@ -218231,14 +218268,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00578m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00578m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00703m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00703m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03529" sboTerm="SBO:0000176" id="MAR03529" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03529" sboTerm="SBO:0000176" id="R_MAR03529" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -218247,7 +218284,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03529">
+            <rdf:Description rdf:about="#R_MAR03529">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.35"/>
@@ -218259,16 +218296,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00703m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00703m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00831m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00831m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03530" sboTerm="SBO:0000176" id="MAR03530" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03530" sboTerm="SBO:0000176" id="R_MAR03530" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -218277,7 +218314,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03530">
+            <rdf:Description rdf:about="#R_MAR03530">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.16"/>
@@ -218289,15 +218326,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00831m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00831m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01015m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02774m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01015m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02774m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03531" sboTerm="SBO:0000176" id="MAR03531" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03531" sboTerm="SBO:0000176" id="R_MAR03531" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -218306,7 +218343,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03531">
+            <rdf:Description rdf:about="#R_MAR03531">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.8.7"/>
@@ -218318,18 +218355,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01015m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01802m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01015m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01802m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01017m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01803m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01017m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01803m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Mcad"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03532" sboTerm="SBO:0000176" id="MAR03532" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03532" sboTerm="SBO:0000176" id="R_MAR03532" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -218338,7 +218375,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03532">
+            <rdf:Description rdf:about="#R_MAR03532">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.17"/>
@@ -218349,14 +218386,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01017m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01017m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00706m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00706m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03533" sboTerm="SBO:0000176" id="MAR03533" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03533" sboTerm="SBO:0000176" id="R_MAR03533" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -218365,7 +218402,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03533">
+            <rdf:Description rdf:about="#R_MAR03533">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.35"/>
@@ -218377,16 +218414,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00706m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00706m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00845m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00845m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03534" sboTerm="SBO:0000176" id="MAR03534" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03534" sboTerm="SBO:0000176" id="R_MAR03534" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -218395,7 +218432,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03534">
+            <rdf:Description rdf:about="#R_MAR03534">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.16"/>
@@ -218407,15 +218444,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00845m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00845m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02180m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02180m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01573" sboTerm="SBO:0000176" id="MAR01573" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01573" sboTerm="SBO:0000176" id="R_MAR01573" name="acetyl-CoA:acetoacetyl-CoA C-acetyltransferase (thioester-hydrolysing, carboxymethyl-forming)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -218424,7 +218461,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01573">
+            <rdf:Description rdf:about="#R_MAR01573">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.3.10"/>
@@ -218440,20 +218477,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01255m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01261m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01255m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02131m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02131m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Hmgs"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06901" sboTerm="SBO:0000176" id="MAR06901" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06901" sboTerm="SBO:0000176" id="R_MAR06901" name="(2E,6E)-farnesyl-diphosphate:isopentenyl-diphosphate farnesyltranstransferase (adding 7 isopentenyl units)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -218461,7 +218498,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06901">
+            <rdf:Description rdf:about="#R_MAR06901">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.5.1.91"/>
@@ -218474,12 +218511,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01806c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02187c" stoichiometry="7" constant="true"/>
+          <speciesReference species="M_MAM01806c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02187c" stoichiometry="7" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01316c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759c" stoichiometry="7" constant="true"/>
+          <speciesReference species="M_MAM01316c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759c" stoichiometry="7" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -218488,7 +218525,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06903" sboTerm="SBO:0000176" id="MAR06903" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06903" sboTerm="SBO:0000176" id="R_MAR06903" name="solanesyl-diphosphate:4-hydroxybenzoate nonaprenyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -218496,7 +218533,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06903">
+            <rdf:Description rdf:about="#R_MAR06903">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.5.1.39"/>
@@ -218509,18 +218546,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00995m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01316m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00995m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01316m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00767m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00767m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Coq2"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06904" sboTerm="SBO:0000176" id="MAR06904" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06904" sboTerm="SBO:0000176" id="R_MAR06904" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -218528,7 +218565,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06904">
+            <rdf:Description rdf:about="#R_MAR06904">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.13.-"/>
@@ -218539,21 +218576,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00767m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00767m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00725m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00725m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Coq6"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06905" sboTerm="SBO:0000176" id="MAR06905" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06905" sboTerm="SBO:0000176" id="R_MAR06905" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -218561,7 +218598,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06905">
+            <rdf:Description rdf:about="#R_MAR06905">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.1.1.114"/>
@@ -218572,19 +218609,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00725m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02877m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00725m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02877m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00817m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02871m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00817m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02871m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Coq3"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06906" sboTerm="SBO:0000176" id="MAR06906" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06906" sboTerm="SBO:0000176" id="R_MAR06906" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -218592,7 +218629,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06906">
+            <rdf:Description rdf:about="#R_MAR06906">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.1.1.-"/>
@@ -218603,15 +218640,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00817m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00817m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00657m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01596m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00657m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01596m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR06907" sboTerm="SBO:0000176" id="MAR06907" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06907" sboTerm="SBO:0000176" id="R_MAR06907" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -218619,7 +218656,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06907">
+            <rdf:Description rdf:about="#R_MAR06907">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.13.-"/>
@@ -218630,21 +218667,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00657m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00657m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00658m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00658m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Coq6"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06908" sboTerm="SBO:0000176" id="MAR06908" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06908" sboTerm="SBO:0000176" id="R_MAR06908" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -218652,7 +218689,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06908">
+            <rdf:Description rdf:about="#R_MAR06908">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.1.1.201"/>
@@ -218663,19 +218700,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00658m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02877m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00658m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02877m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01165m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02871m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01165m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02871m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Coq5"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06909" sboTerm="SBO:0000176" id="MAR06909" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06909" sboTerm="SBO:0000176" id="R_MAR06909" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -218683,7 +218720,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06909">
+            <rdf:Description rdf:about="#R_MAR06909">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.-.-"/>
@@ -218694,21 +218731,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01165m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01165m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00770m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00770m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Coq7"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06910" sboTerm="SBO:0000176" id="MAR06910" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06910" sboTerm="SBO:0000176" id="R_MAR06910" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -218716,7 +218753,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06910">
+            <rdf:Description rdf:about="#R_MAR06910">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.1.1.64"/>
@@ -218728,19 +218765,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00770m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02877m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00770m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02877m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02871m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03102m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02871m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03102m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Coq3"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07165" sboTerm="SBO:0000176" id="MAR07165" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07165" sboTerm="SBO:0000176" id="R_MAR07165" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -218748,7 +218785,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07165">
+            <rdf:Description rdf:about="#R_MAR07165">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_7165"/>
@@ -218758,15 +218795,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00196c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01628c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00196c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01628c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00200c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00200c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07166" sboTerm="SBO:0000176" id="MAR07166" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07166" sboTerm="SBO:0000176" id="R_MAR07166" name="farnesyl-diphosphate:protein-cysteine farnesyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -218774,7 +218811,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07166">
+            <rdf:Description rdf:about="#R_MAR07166">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.5.1.58"/>
@@ -218787,12 +218824,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00200c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01806c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00200c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01806c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02759c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02898c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02898c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -218801,7 +218838,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07167" sboTerm="SBO:0000176" id="MAR07167" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07167" sboTerm="SBO:0000176" id="R_MAR07167" name="CAAX protease" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -218809,7 +218846,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07167">
+            <rdf:Description rdf:about="#R_MAR07167">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.4.22.-"/>
@@ -218822,18 +218859,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02898c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02898c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00194c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM10009c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00194c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM10009c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="ste24a"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07168" sboTerm="SBO:0000176" id="MAR07168" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07168" sboTerm="SBO:0000176" id="R_MAR07168" name="S-Adenosyl-L-methionine:protein-C-terminal-S-farnesyl-L-cysteine O-methyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -218841,7 +218878,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07168">
+            <rdf:Description rdf:about="#R_MAR07168">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.1.1.100"/>
@@ -218854,18 +218891,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00194c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02877c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00194c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02877c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00195c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02871c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00195c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02871c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="ste14"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07169" sboTerm="SBO:0000176" id="MAR07169" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07169" sboTerm="SBO:0000176" id="R_MAR07169" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -218873,7 +218910,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07169">
+            <rdf:Description rdf:about="#R_MAR07169">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R09847"/>
@@ -218885,15 +218922,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00195c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00195c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM10008c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM10010c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM10008c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM10010c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01644" sboTerm="SBO:0000176" id="MAR01644" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01644" sboTerm="SBO:0000176" id="R_MAR01644" name="(24R,25R)-3alpha,7alpha,12alpha,24-tetrahydroxy-5beta-cholestanoyl-CoA hydro-lyase [(24E)-3alpha,7alpha,12alpha-trihydroxy-5beta-cholest-24-enoyl-CoA-forming]" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -218902,7 +218939,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01644">
+            <rdf:Description rdf:about="#R_MAR01644">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.107"/>
@@ -218914,17 +218951,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00749m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00749m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00036m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00036m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Mfe2"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01651" sboTerm="SBO:0000176" id="MAR01651" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01651" sboTerm="SBO:0000176" id="R_MAR01651" name="(24R,25R)-3alpha,7alpha,12alpha,24-tetrahydroxy-5beta-cholestanoyl-CoA:NAD+ oxidoreductase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -218933,7 +218970,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01651">
+            <rdf:Description rdf:about="#R_MAR01651">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.35"/>
@@ -218946,16 +218983,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00036m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00036m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00748m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00748m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01924" sboTerm="SBO:0000176" id="MAR01924" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01924" sboTerm="SBO:0000176" id="R_MAR01924" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -218964,7 +219001,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01924">
+            <rdf:Description rdf:about="#R_MAR01924">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/reactome/R-HSA-196126"/>
@@ -218974,14 +219011,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01450c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02935c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02935c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01511c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01511c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01926" sboTerm="SBO:0000176" id="MAR01926" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01926" sboTerm="SBO:0000176" id="R_MAR01926" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -218990,7 +219027,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01926">
+            <rdf:Description rdf:about="#R_MAR01926">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/reactome/R-HSA-196086"/>
@@ -219000,14 +219037,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01511m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01511m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01450m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02935m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02935m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01927" sboTerm="SBO:0000176" id="MAR01927" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01927" sboTerm="SBO:0000176" id="R_MAR01927" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -219016,7 +219053,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01927">
+            <rdf:Description rdf:about="#R_MAR01927">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.13.-"/>
@@ -219031,15 +219068,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01450m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00606m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00606m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -219049,7 +219086,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01931" sboTerm="SBO:0000176" id="MAR01931" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01931" sboTerm="SBO:0000176" id="R_MAR01931" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -219058,7 +219095,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01931">
+            <rdf:Description rdf:about="#R_MAR01931">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.21"/>
@@ -219071,19 +219108,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02182c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02182c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01014c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01014c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Akr1B"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01941" sboTerm="SBO:0000176" id="MAR01941" name="Formation of 11-deoxycorticosterone" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01941" sboTerm="SBO:0000176" id="R_MAR01941" name="Formation of 11-deoxycorticosterone" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -219091,7 +219128,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01941">
+            <rdf:Description rdf:about="#R_MAR01941">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.145"/>
@@ -219105,19 +219142,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00605c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00605c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00294c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00294c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG7724"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01949" sboTerm="SBO:0000176" id="MAR01949" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01949" sboTerm="SBO:0000176" id="R_MAR01949" name="11-Deoxycortisol delta5-delat4-isomerase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -219125,7 +219162,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01949">
+            <rdf:Description rdf:about="#R_MAR01949">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.145"/>
@@ -219139,19 +219176,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00406c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00406c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00295c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00295c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG7724"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01951" sboTerm="SBO:0000176" id="MAR01951" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01951" sboTerm="SBO:0000176" id="R_MAR01951" name="Cortisol delta5-delat4-isomerase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -219159,7 +219196,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01951">
+            <rdf:Description rdf:about="#R_MAR01951">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.145"/>
@@ -219173,19 +219210,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00283c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00283c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01615c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01615c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG7724"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02002" sboTerm="SBO:0000176" id="MAR02002" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02002" sboTerm="SBO:0000176" id="R_MAR02002" name="5alpha-pregnane-3,20-dione:NADP+ delta4-oxidoreductase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -219193,7 +219230,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02002">
+            <rdf:Description rdf:about="#R_MAR02002">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.1.30"/>
@@ -219208,19 +219245,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01072c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01072c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02769c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02769c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG7840"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02003" sboTerm="SBO:0000176" id="MAR02003" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02003" sboTerm="SBO:0000176" id="R_MAR02003" name="3alpha-hydroxy-5alpha-pregnan-20-one:NADP+ 3-oxidoreductase (A-specific)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -219228,7 +219265,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02003">
+            <rdf:Description rdf:about="#R_MAR02003">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.213"/>
@@ -219241,19 +219278,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00759c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01072c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01072c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Akr1B"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02004" sboTerm="SBO:0000176" id="MAR02004" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02004" sboTerm="SBO:0000176" id="R_MAR02004" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -219262,7 +219299,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02004">
+            <rdf:Description rdf:about="#R_MAR02004">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.50"/>
@@ -219274,19 +219311,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01072c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01072c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01314c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01314c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Akr1B"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04766" sboTerm="SBO:0000176" id="MAR04766" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04766" sboTerm="SBO:0000176" id="R_MAR04766" name="UDPglucuronate beta-D-glucuronosyltransferase(acceptor-unspecific)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -219295,7 +219332,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04766">
+            <rdf:Description rdf:about="#R_MAR04766">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.17"/>
@@ -219310,12 +219347,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01396r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03109r" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01396r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03109r" stoichiometry="2" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01397r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106r" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01397r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106r" stoichiometry="2" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -219335,7 +219372,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06793" sboTerm="SBO:0000176" id="MAR06793" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06793" sboTerm="SBO:0000176" id="R_MAR06793" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -219343,7 +219380,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06793">
+            <rdf:Description rdf:about="#R_MAR06793">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.11.1.8"/>
@@ -219356,19 +219393,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02175c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03101c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02175c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03101c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00807c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02146c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00807c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02146c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="cd"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06794" sboTerm="SBO:0000176" id="MAR06794" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06794" sboTerm="SBO:0000176" id="R_MAR06794" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -219376,7 +219413,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06794">
+            <rdf:Description rdf:about="#R_MAR06794">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.11.1.8"/>
@@ -219389,19 +219426,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00807c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02175c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00807c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02175c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00739c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02146c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00739c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02146c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="cd"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06795" sboTerm="SBO:0000176" id="MAR06795" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06795" sboTerm="SBO:0000176" id="R_MAR06795" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -219409,7 +219446,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06795">
+            <rdf:Description rdf:about="#R_MAR06795">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.11.1.8"/>
@@ -219422,19 +219459,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00739c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02041c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00739c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02041c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01654c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02998c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01654c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02998c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="cd"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06796" sboTerm="SBO:0000176" id="MAR06796" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06796" sboTerm="SBO:0000176" id="R_MAR06796" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -219442,7 +219479,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06796">
+            <rdf:Description rdf:about="#R_MAR06796">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.11.1.8"/>
@@ -219453,20 +219490,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00739c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00807c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02041c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00739c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00807c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01654c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03052c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01654c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03052c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="cd"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07648" sboTerm="SBO:0000176" id="MAR07648" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07648" sboTerm="SBO:0000176" id="R_MAR07648" name="UDPglucuronate beta-D-glucuronosyltransferase(acceptor-unspecific)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -219474,7 +219511,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07648">
+            <rdf:Description rdf:about="#R_MAR07648">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.17"/>
@@ -219489,12 +219526,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01787r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03109r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01787r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03109r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01786r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01786r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -219514,7 +219551,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07930" sboTerm="SBO:0000176" id="MAR07930" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07930" sboTerm="SBO:0000176" id="R_MAR07930" name="Pregnenolone:NAD+ 3-oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -219522,7 +219559,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07930">
+            <rdf:Description rdf:about="#R_MAR07930">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/5.3.3.1"/>
@@ -219536,19 +219573,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02552c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02763c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02763c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02769c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02769c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG7724"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07931" sboTerm="SBO:0000176" id="MAR07931" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07931" sboTerm="SBO:0000176" id="R_MAR07931" name="Pregnenolone:NAD+ 3-oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -219556,7 +219593,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07931">
+            <rdf:Description rdf:about="#R_MAR07931">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/5.3.3.1"/>
@@ -219570,19 +219607,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02552r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02763r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02763r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02769r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02769r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG7724"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07939" sboTerm="SBO:0000176" id="MAR07939" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07939" sboTerm="SBO:0000176" id="R_MAR07939" name="17alpha-Hydroxypregnenolone:NAD+ 3-oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -219590,7 +219627,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07939">
+            <rdf:Description rdf:about="#R_MAR07939">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/5.3.3.1"/>
@@ -219604,19 +219641,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00408r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00408r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00409r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00409r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG7724"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07940" sboTerm="SBO:0000176" id="MAR07940" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07940" sboTerm="SBO:0000176" id="R_MAR07940" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -219624,7 +219661,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07940">
+            <rdf:Description rdf:about="#R_MAR07940">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/P45019A1r"/>
@@ -219636,15 +219673,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00971r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630r" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM00971r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630r" stoichiometry="2" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01790r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01833r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040r" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02554r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01790r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01833r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02554r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -219654,7 +219691,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07941" sboTerm="SBO:0000176" id="MAR07941" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07941" sboTerm="SBO:0000176" id="R_MAR07941" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -219662,7 +219699,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07941">
+            <rdf:Description rdf:about="#R_MAR07941">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/P45019A2r"/>
@@ -219674,15 +219711,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02555r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630r" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02969r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630r" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02969r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01787r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01833r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040r" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02554r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01787r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01833r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02554r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -219692,7 +219729,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07943" sboTerm="SBO:0000176" id="MAR07943" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07943" sboTerm="SBO:0000176" id="R_MAR07943" name="Cortisol:NAD+ 11-oxidoreductase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -219700,7 +219737,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07943">
+            <rdf:Description rdf:about="#R_MAR07943">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.-"/>
@@ -219716,19 +219753,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01616r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01616r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01615r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01615r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="sro"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07954" sboTerm="SBO:0000176" id="MAR07954" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07954" sboTerm="SBO:0000176" id="R_MAR07954" name="3beta-Hydroxyandrost-5-en-17-one:NAD+ 3-oxidoreductase/delta5-delta-4 isomerase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -219736,7 +219773,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07954">
+            <rdf:Description rdf:about="#R_MAR07954">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/5.3.3.1"/>
@@ -219750,19 +219787,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01660r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01660r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00971r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00971r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG7724"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07955" sboTerm="SBO:0000176" id="MAR07955" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07955" sboTerm="SBO:0000176" id="R_MAR07955" name="testosterone:NAD+ 17-oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -219770,7 +219807,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07955">
+            <rdf:Description rdf:about="#R_MAR07955">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.239"/>
@@ -219784,13 +219821,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00971r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00971r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02552r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02969r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02969r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -219799,7 +219836,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07957" sboTerm="SBO:0000176" id="MAR07957" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07957" sboTerm="SBO:0000176" id="R_MAR07957" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -219807,7 +219844,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07957">
+            <rdf:Description rdf:about="#R_MAR07957">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.14.1"/>
@@ -219820,15 +219857,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02969r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02969r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00432r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00432r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -219838,7 +219875,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07958" sboTerm="SBO:0000176" id="MAR07958" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07958" sboTerm="SBO:0000176" id="R_MAR07958" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -219846,7 +219883,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07958">
+            <rdf:Description rdf:about="#R_MAR07958">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.14.1"/>
@@ -219859,21 +219896,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02969r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02969r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01158r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01158r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Cyp9c1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07959" sboTerm="SBO:0000176" id="MAR07959" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07959" sboTerm="SBO:0000176" id="R_MAR07959" name="17beta-hydroxysteroid UDP-glucuronosyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -219881,7 +219918,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07959">
+            <rdf:Description rdf:about="#R_MAR07959">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.17"/>
@@ -219895,12 +219932,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02969r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03109r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02969r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03109r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02967r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02967r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -219919,7 +219956,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07962" sboTerm="SBO:0000176" id="MAR07962" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07962" sboTerm="SBO:0000176" id="R_MAR07962" name="UDPglucuronate beta-D-glucuronosyltransferase(acceptor-unspecific)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -219927,7 +219964,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07962">
+            <rdf:Description rdf:about="#R_MAR07962">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.17"/>
@@ -219941,12 +219978,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01790r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03109r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01790r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03109r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01795r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01795r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -219962,7 +219999,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07965" sboTerm="SBO:0000176" id="MAR07965" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07965" sboTerm="SBO:0000176" id="R_MAR07965" name="UDPglucuronate beta-D-glucuronosyltransferase(acceptor-unspecific)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -219970,7 +220007,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07965">
+            <rdf:Description rdf:about="#R_MAR07965">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.17"/>
@@ -219984,12 +220021,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01338r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03109r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01338r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03109r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01339r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01339r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -220008,7 +220045,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07968" sboTerm="SBO:0000176" id="MAR07968" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07968" sboTerm="SBO:0000176" id="R_MAR07968" name="Estradiol-17beta:NAD+ 17-oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -220016,7 +220053,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07968">
+            <rdf:Description rdf:about="#R_MAR07968">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.62"/>
@@ -220031,13 +220068,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01790r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01790r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01787r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01787r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -220048,7 +220085,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02041" sboTerm="SBO:0000176" id="MAR02041" name="17-beta-estradiol 17-dehydrogenase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02041" sboTerm="SBO:0000176" id="R_MAR02041" name="17-beta-estradiol 17-dehydrogenase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 4</p>
@@ -220057,7 +220094,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02041">
+            <rdf:Description rdf:about="#R_MAR02041">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.62"/>
@@ -220073,13 +220110,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01790r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01790r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01787r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01787r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -220090,7 +220127,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07971" sboTerm="SBO:0000176" id="MAR07971" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07971" sboTerm="SBO:0000176" id="R_MAR07971" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -220098,7 +220135,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07971">
+            <rdf:Description rdf:about="#R_MAR07971">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/5.3.3.1"/>
@@ -220111,20 +220148,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00399r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00399r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01064r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01064r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG7724"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07972" sboTerm="SBO:0000176" id="MAR07972" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07972" sboTerm="SBO:0000176" id="R_MAR07972" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -220132,7 +220169,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07972">
+            <rdf:Description rdf:about="#R_MAR07972">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/5.3.3.1"/>
@@ -220145,20 +220182,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00399r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00399r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01064r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01064r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG7724"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07973" sboTerm="SBO:0000176" id="MAR07973" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07973" sboTerm="SBO:0000176" id="R_MAR07973" name="17alpha-Hydroxypregnenolone:NAD+ 3-oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -220166,7 +220203,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07973">
+            <rdf:Description rdf:about="#R_MAR07973">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/5.3.3.1"/>
@@ -220180,19 +220217,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00408c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00408c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00409c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00409c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG7724"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07974" sboTerm="SBO:0000176" id="MAR07974" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07974" sboTerm="SBO:0000176" id="R_MAR07974" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -220200,7 +220237,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07974">
+            <rdf:Description rdf:about="#R_MAR07974">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.8.2.14"/>
@@ -220213,19 +220250,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01069c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02682c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01069c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02682c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01071c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02681c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01071c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02681c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="St2"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07976" sboTerm="SBO:0000176" id="MAR07976" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07976" sboTerm="SBO:0000176" id="R_MAR07976" name="20alpha-Hydroxy-4-pregnen-3-one:NADP+ 20-oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -220233,7 +220270,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07976">
+            <rdf:Description rdf:about="#R_MAR07976">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/AKR1C1"/>
@@ -220246,19 +220283,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02769c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02769c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00580c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00580c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Akr1B"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07978" sboTerm="SBO:0000176" id="MAR07978" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07978" sboTerm="SBO:0000176" id="R_MAR07978" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -220266,7 +220303,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07978">
+            <rdf:Description rdf:about="#R_MAR07978">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.8.2.14"/>
@@ -220279,19 +220316,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02682c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02969c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02682c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02969c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02681c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02968c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02681c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02968c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="St2"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07980" sboTerm="SBO:0000176" id="MAR07980" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07980" sboTerm="SBO:0000176" id="R_MAR07980" name="UDPglucuronate beta-D-glucuronosyltransferase(acceptor-unspecific)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -220299,7 +220336,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07980">
+            <rdf:Description rdf:about="#R_MAR07980">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.17"/>
@@ -220313,12 +220350,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01800r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03109r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01800r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03109r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01799r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01799r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -220334,7 +220371,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07984" sboTerm="SBO:0000176" id="MAR07984" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07984" sboTerm="SBO:0000176" id="R_MAR07984" name="UDPglucuronate beta-D-glucuronosyltransferase(acceptor-unspecific)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -220342,7 +220379,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07984">
+            <rdf:Description rdf:about="#R_MAR07984">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.17"/>
@@ -220356,12 +220393,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01788r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03109r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01788r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03109r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00402r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00402r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -220379,7 +220416,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07987" sboTerm="SBO:0000176" id="MAR07987" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07987" sboTerm="SBO:0000176" id="R_MAR07987" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -220387,7 +220424,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07987">
+            <rdf:Description rdf:about="#R_MAR07987">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.17"/>
@@ -220400,12 +220437,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01069r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03109r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01069r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03109r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01070r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01070r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -220423,7 +220460,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01952" sboTerm="SBO:0000176" id="MAR01952" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01952" sboTerm="SBO:0000176" id="R_MAR01952" name="3&apos;-phosphoadenylyl-sulfate:pregnenolone sulfotransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -220431,7 +220468,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01952">
+            <rdf:Description rdf:about="#R_MAR01952">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.8.2.2"/>
@@ -220443,19 +220480,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02682c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02763c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02682c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02763c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02681c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02762c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02681c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02762c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="St2"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01959" sboTerm="SBO:0000176" id="MAR01959" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01959" sboTerm="SBO:0000176" id="R_MAR01959" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -220464,7 +220501,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01959">
+            <rdf:Description rdf:about="#R_MAR01959">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.99.-"/>
@@ -220476,21 +220513,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00408c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00408c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01252c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01660c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01252c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01660c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="ninaB"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01960" sboTerm="SBO:0000176" id="MAR01960" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01960" sboTerm="SBO:0000176" id="R_MAR01960" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -220499,7 +220536,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01960">
+            <rdf:Description rdf:about="#R_MAR01960">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.99.-"/>
@@ -220510,21 +220547,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00408r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00408r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01252r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01660r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01252r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01660r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="ninaB"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01962" sboTerm="SBO:0000176" id="MAR01962" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01962" sboTerm="SBO:0000176" id="R_MAR01962" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -220533,7 +220570,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01962">
+            <rdf:Description rdf:about="#R_MAR01962">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.8.2.2"/>
@@ -220544,19 +220581,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00408c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02682c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00408c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02682c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00407c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02681c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00407c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02681c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="St2"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01967" sboTerm="SBO:0000176" id="MAR01967" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01967" sboTerm="SBO:0000176" id="R_MAR01967" name="dehydroepiandrosterone:NAD+ oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -220564,7 +220601,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01967">
+            <rdf:Description rdf:about="#R_MAR01967">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.145"/>
@@ -220576,19 +220613,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01660c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01660c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01075c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01075c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG7724"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01968" sboTerm="SBO:0000176" id="MAR01968" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01968" sboTerm="SBO:0000176" id="R_MAR01968" name="dehydroepiandrosterone:NAD+ oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -220596,7 +220633,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01968">
+            <rdf:Description rdf:about="#R_MAR01968">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.145"/>
@@ -220608,19 +220645,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01660r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01660r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01075r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01075r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG7724"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01969" sboTerm="SBO:0000176" id="MAR01969" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01969" sboTerm="SBO:0000176" id="R_MAR01969" name="3&apos;-phosphoadenylylsulfate:alcohol sulfotransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -220629,7 +220666,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01969">
+            <rdf:Description rdf:about="#R_MAR01969">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.8.2.4"/>
@@ -220641,19 +220678,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01660c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02682c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01660c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02682c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01659c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02681c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01659c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02681c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="St1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01970" sboTerm="SBO:0000176" id="MAR01970" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01970" sboTerm="SBO:0000176" id="R_MAR01970" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -220662,7 +220699,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01970">
+            <rdf:Description rdf:about="#R_MAR01970">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/5.3.3.1"/>
@@ -220673,19 +220710,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01075c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01075c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00971c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00971c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG7724"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01971" sboTerm="SBO:0000176" id="MAR01971" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01971" sboTerm="SBO:0000176" id="R_MAR01971" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -220694,7 +220731,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01971">
+            <rdf:Description rdf:about="#R_MAR01971">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/5.3.3.1"/>
@@ -220705,19 +220742,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01075r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01075r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00971r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00971r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG7724"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01973" sboTerm="SBO:0000176" id="MAR01973" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01973" sboTerm="SBO:0000176" id="R_MAR01973" name="testosterone:NADP+ 17-oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -220726,7 +220763,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01973">
+            <rdf:Description rdf:about="#R_MAR01973">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.62"/>
@@ -220742,13 +220779,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00971c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00971c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02969c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02969c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -220760,7 +220797,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01974" sboTerm="SBO:0000176" id="MAR01974" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01974" sboTerm="SBO:0000176" id="R_MAR01974" name="testosterone:NADP+ 17-oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -220769,7 +220806,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01974">
+            <rdf:Description rdf:about="#R_MAR01974">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.62"/>
@@ -220782,13 +220819,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00971r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00971r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02554r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02969r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02969r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -220800,7 +220837,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01976" sboTerm="SBO:0000176" id="MAR01976" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01976" sboTerm="SBO:0000176" id="R_MAR01976" name="dihydrotestosterone:NADP+ delta4-oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -220809,7 +220846,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01976">
+            <rdf:Description rdf:about="#R_MAR01976">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.1.22"/>
@@ -220823,19 +220860,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02969c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02969c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01069c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01069c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG7840"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01977" sboTerm="SBO:0000176" id="MAR01977" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01977" sboTerm="SBO:0000176" id="R_MAR01977" name="dihydrotestosterone:NADP+ delta4-oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -220844,7 +220881,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01977">
+            <rdf:Description rdf:about="#R_MAR01977">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.1.22"/>
@@ -220858,19 +220895,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02969r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02969r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01069r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01069r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG7840"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01978" sboTerm="SBO:0000176" id="MAR01978" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01978" sboTerm="SBO:0000176" id="R_MAR01978" name="3beta-Hydroxysteroid:NADP+ oxidoreductase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -220879,7 +220916,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01978">
+            <rdf:Description rdf:about="#R_MAR01978">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.50"/>
@@ -220892,19 +220929,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01069c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01069c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01065c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01065c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Akr1B"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01982" sboTerm="SBO:0000176" id="MAR01982" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01982" sboTerm="SBO:0000176" id="R_MAR01982" name="17alpha-Hydroxypregnenolone:NAD+ 3-oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -220913,7 +220950,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01982">
+            <rdf:Description rdf:about="#R_MAR01982">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.145"/>
@@ -220927,19 +220964,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00408c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00408c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02761c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02761c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG7724"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01983" sboTerm="SBO:0000176" id="MAR01983" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01983" sboTerm="SBO:0000176" id="R_MAR01983" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -220948,7 +220985,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01983">
+            <rdf:Description rdf:about="#R_MAR01983">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/5.3.3.1"/>
@@ -220961,16 +220998,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02761c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02761c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00409c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00409c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG7724"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02014" sboTerm="SBO:0000176" id="MAR02014" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02014" sboTerm="SBO:0000176" id="R_MAR02014" name="5alpha-androstane-3,17-dione:NADP+ delta4-oxidoreductase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -220978,7 +221015,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02014">
+            <rdf:Description rdf:about="#R_MAR02014">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.1.3"/>
@@ -220992,19 +221029,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00971c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00971c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01064c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01064c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Akr1B"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02015" sboTerm="SBO:0000176" id="MAR02015" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02015" sboTerm="SBO:0000176" id="R_MAR02015" name="5alpha-androstane-3,17-dione:NADP+ delta4-oxidoreductase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -221012,7 +221049,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02015">
+            <rdf:Description rdf:about="#R_MAR02015">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.1.22"/>
@@ -221025,19 +221062,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00971r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00971r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01064r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01064r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG7840"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02016" sboTerm="SBO:0000176" id="MAR02016" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02016" sboTerm="SBO:0000176" id="R_MAR02016" name="Androsterone:NAD+ oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -221045,7 +221082,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02016">
+            <rdf:Description rdf:about="#R_MAR02016">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.209"/>
@@ -221060,19 +221097,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01064c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01064c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01338c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01338c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Akr1B"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02017" sboTerm="SBO:0000176" id="MAR02017" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02017" sboTerm="SBO:0000176" id="R_MAR02017" name="Androsterone:NAD+ oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -221080,7 +221117,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02017">
+            <rdf:Description rdf:about="#R_MAR02017">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.209"/>
@@ -221095,19 +221132,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01064r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01064r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01338r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01338r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Akr1B"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02018" sboTerm="SBO:0000176" id="MAR02018" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02018" sboTerm="SBO:0000176" id="R_MAR02018" name="Androsterone:NADP+ oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -221115,7 +221152,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02018">
+            <rdf:Description rdf:about="#R_MAR02018">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.209"/>
@@ -221130,19 +221167,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01064c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01064c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01338c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01338c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Akr1B"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02019" sboTerm="SBO:0000176" id="MAR02019" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02019" sboTerm="SBO:0000176" id="R_MAR02019" name="Androsterone:NADP+ oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -221150,7 +221187,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02019">
+            <rdf:Description rdf:about="#R_MAR02019">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.209"/>
@@ -221165,19 +221202,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01064r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01064r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01338r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01338r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Akr1B"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02022" sboTerm="SBO:0000176" id="MAR02022" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02022" sboTerm="SBO:0000176" id="R_MAR02022" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -221186,7 +221223,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02022">
+            <rdf:Description rdf:about="#R_MAR02022">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.145"/>
@@ -221198,19 +221235,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01069c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01069c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01336c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01336c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG7724"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02024" sboTerm="SBO:0000176" id="MAR02024" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02024" sboTerm="SBO:0000176" id="R_MAR02024" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -221219,7 +221256,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02024">
+            <rdf:Description rdf:about="#R_MAR02024">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.145"/>
@@ -221231,19 +221268,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01069r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01069r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01336r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01336r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG7724"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01440" sboTerm="SBO:0000176" id="MAR01440" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01440" sboTerm="SBO:0000176" id="R_MAR01440" name="(R)-Mevalonate:NADP+ oxidoreductase (CoA acylating)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -221252,7 +221289,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01440">
+            <rdf:Description rdf:about="#R_MAR01440">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.34"/>
@@ -221269,20 +221306,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02131c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02131c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="2" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00167c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM00167c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="2" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Hmgcr"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01445" sboTerm="SBO:0000176" id="MAR01445" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01445" sboTerm="SBO:0000176" id="R_MAR01445" name="ATP:(R)-mevalonate 5-phosphotransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -221291,7 +221328,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01445">
+            <rdf:Description rdf:about="#R_MAR01445">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.1.36"/>
@@ -221309,19 +221346,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00167c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00167c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00165c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00165c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Mvk"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01448" sboTerm="SBO:0000176" id="MAR01448" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01448" sboTerm="SBO:0000176" id="R_MAR01448" name="ATP:(R)-5-phosphomevalonate phosphotransferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -221330,7 +221367,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01448">
+            <rdf:Description rdf:about="#R_MAR01448">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.4.2"/>
@@ -221348,18 +221385,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00164c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00164c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00165c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00165c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Pmvk"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01454" sboTerm="SBO:0000176" id="MAR01454" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01454" sboTerm="SBO:0000176" id="R_MAR01454" name="isopentenyl-diphosphate Delta3-Delta2-isomerase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -221368,7 +221405,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01454">
+            <rdf:Description rdf:about="#R_MAR01454">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/5.3.3.2"/>
@@ -221383,16 +221420,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02187c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02187c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01706c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01706c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Idi"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01484" sboTerm="SBO:0000176" id="MAR01484" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01484" sboTerm="SBO:0000176" id="R_MAR01484" name="4,4-dimethyl-5a-cholesta-8,24-dien-3b-ol:NADP+ D14-oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -221401,7 +221438,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01484">
+            <rdf:Description rdf:about="#R_MAR01484">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.1.70"/>
@@ -221417,19 +221454,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00941c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00941c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00367c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00367c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="LBR"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01490" sboTerm="SBO:0000176" id="MAR01490" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01490" sboTerm="SBO:0000176" id="R_MAR01490" name="14-demethyllanosterol,ferrocytochrome-b5:oxygen oxidoreductase (hydroxylating)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -221437,7 +221474,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01490">
+            <rdf:Description rdf:about="#R_MAR01490">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.13.72"/>
@@ -221449,21 +221486,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00367c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00367c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00961c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00961c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG1998"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01493" sboTerm="SBO:0000176" id="MAR01493" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01493" sboTerm="SBO:0000176" id="R_MAR01493" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -221471,7 +221508,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01493">
+            <rdf:Description rdf:about="#R_MAR01493">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.13.72"/>
@@ -221482,21 +221519,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00961c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00961c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00957c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00957c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG1998"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01494" sboTerm="SBO:0000176" id="MAR01494" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01494" sboTerm="SBO:0000176" id="R_MAR01494" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -221504,7 +221541,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01494">
+            <rdf:Description rdf:about="#R_MAR01494">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.13.72"/>
@@ -221515,21 +221552,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00957c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00957c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00953c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00953c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG1998"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01495" sboTerm="SBO:0000176" id="MAR01495" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01495" sboTerm="SBO:0000176" id="R_MAR01495" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -221538,7 +221575,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01495">
+            <rdf:Description rdf:about="#R_MAR01495">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.170"/>
@@ -221552,20 +221589,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00953c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00953c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00809c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01596c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00809c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01596c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="MAGE"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01502" sboTerm="SBO:0000176" id="MAR01502" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01502" sboTerm="SBO:0000176" id="R_MAR01502" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -221573,7 +221610,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01502">
+            <rdf:Description rdf:about="#R_MAR01502">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.13.72"/>
@@ -221584,21 +221621,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00968c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00968c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00963c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00963c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG1998"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01503" sboTerm="SBO:0000176" id="MAR01503" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01503" sboTerm="SBO:0000176" id="R_MAR01503" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -221606,7 +221643,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01503">
+            <rdf:Description rdf:about="#R_MAR01503">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.13.72"/>
@@ -221617,21 +221654,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00963c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00963c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00959c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00959c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG1998"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01504" sboTerm="SBO:0000176" id="MAR01504" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01504" sboTerm="SBO:0000176" id="R_MAR01504" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -221639,7 +221676,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01504">
+            <rdf:Description rdf:about="#R_MAR01504">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.13.72"/>
@@ -221650,21 +221687,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00959c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00959c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00955c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00955c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG1998"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01540" sboTerm="SBO:0000176" id="MAR01540" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01540" sboTerm="SBO:0000176" id="R_MAR01540" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -221673,7 +221710,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01540">
+            <rdf:Description rdf:about="#R_MAR01540">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.1.70"/>
@@ -221685,19 +221722,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00942c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00942c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00943c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00943c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="LBR"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01543" sboTerm="SBO:0000176" id="MAR01543" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01543" sboTerm="SBO:0000176" id="R_MAR01543" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -221705,7 +221742,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01543">
+            <rdf:Description rdf:about="#R_MAR01543">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.13.72"/>
@@ -221716,21 +221753,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00943c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00943c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00962c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00962c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG1998"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01544" sboTerm="SBO:0000176" id="MAR01544" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01544" sboTerm="SBO:0000176" id="R_MAR01544" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -221738,7 +221775,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01544">
+            <rdf:Description rdf:about="#R_MAR01544">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.13.72"/>
@@ -221749,21 +221786,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00962c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00962c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00958c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00958c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG1998"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01545" sboTerm="SBO:0000176" id="MAR01545" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01545" sboTerm="SBO:0000176" id="R_MAR01545" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -221771,7 +221808,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01545">
+            <rdf:Description rdf:about="#R_MAR01545">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.13.72"/>
@@ -221782,21 +221819,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00958c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00958c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00954c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00954c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG1998"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01548" sboTerm="SBO:0000176" id="MAR01548" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01548" sboTerm="SBO:0000176" id="R_MAR01548" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -221804,7 +221841,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01548">
+            <rdf:Description rdf:about="#R_MAR01548">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.13.72"/>
@@ -221815,21 +221852,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00967c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00967c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00964c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00964c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG1998"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01549" sboTerm="SBO:0000176" id="MAR01549" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01549" sboTerm="SBO:0000176" id="R_MAR01549" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -221837,7 +221874,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01549">
+            <rdf:Description rdf:about="#R_MAR01549">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.13.72"/>
@@ -221848,21 +221885,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00964c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00964c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00960c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00960c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG1998"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01550" sboTerm="SBO:0000176" id="MAR01550" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01550" sboTerm="SBO:0000176" id="R_MAR01550" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -221870,7 +221907,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01550">
+            <rdf:Description rdf:about="#R_MAR01550">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.13.72"/>
@@ -221881,21 +221918,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00960c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00960c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00956c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00956c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG1998"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01437" sboTerm="SBO:0000176" id="MAR01437" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01437" sboTerm="SBO:0000176" id="R_MAR01437" name="acetyl-CoA:acetoacetyl-CoA C-acetyltransferase (thioester-hydrolysing, carboxymethyl-forming)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -221904,7 +221941,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01437">
+            <rdf:Description rdf:about="#R_MAR01437">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.3.10"/>
@@ -221921,20 +221958,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01255c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01261c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01255c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02131c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02131c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Hmgs"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01451" sboTerm="SBO:0000176" id="MAR01451" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01451" sboTerm="SBO:0000176" id="R_MAR01451" name="ATP:(R)-5-diphosphomevalonate carboxy-lyase (adding ATP" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -221943,7 +221980,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01451">
+            <rdf:Description rdf:about="#R_MAR01451">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.1.1.33"/>
@@ -221959,20 +221996,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00164c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00164c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01596c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02187c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01596c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02187c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Mvd"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01457" sboTerm="SBO:0000176" id="MAR01457" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01457" sboTerm="SBO:0000176" id="R_MAR01457" name="Dimethylallyl-diphosphate:isopentenyl-diphosphate dimethylallyltranstransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -221981,7 +222018,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01457">
+            <rdf:Description rdf:about="#R_MAR01457">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.5.1.1"/>
@@ -221998,12 +222035,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01706c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02187c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01706c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02187c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01953c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01953c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -222012,7 +222049,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01460" sboTerm="SBO:0000176" id="MAR01460" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01460" sboTerm="SBO:0000176" id="R_MAR01460" name="Geranyl-diphosphate:isopentenyl-diphosphate geranyltrans-transferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -222021,7 +222058,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01460">
+            <rdf:Description rdf:about="#R_MAR01460">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.5.1.1"/>
@@ -222038,12 +222075,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01953c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02187c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01953c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02187c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01806c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01806c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -222052,7 +222089,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01531" sboTerm="SBO:0000176" id="MAR01531" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01531" sboTerm="SBO:0000176" id="R_MAR01531" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -222061,7 +222098,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01531">
+            <rdf:Description rdf:about="#R_MAR01531">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.13.15"/>
@@ -222073,15 +222110,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02805c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02805c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00624c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00624c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -222090,7 +222127,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01577" sboTerm="SBO:0000176" id="MAR01577" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01577" sboTerm="SBO:0000176" id="R_MAR01577" name="(S)-3-hydroxy-3-methylglutaryl-CoA acetoacetate-lyase (acetyl-CoA-forming)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -222099,7 +222136,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01577">
+            <rdf:Description rdf:about="#R_MAR01577">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.1.3.4"/>
@@ -222114,17 +222151,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02131m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02131m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01253m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01261m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01253m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Hmgcl"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03105" sboTerm="SBO:0000176" id="MAR03105" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03105" sboTerm="SBO:0000176" id="R_MAR03105" name="acetyl-CoA:acetyl-CoA C-acetyltransferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -222133,7 +222170,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03105">
+            <rdf:Description rdf:about="#R_MAR03105">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.9"/>
@@ -222149,17 +222186,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01255x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01255x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261x" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01261x" stoichiometry="2" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Acat2"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04630" sboTerm="SBO:0000176" id="MAR04630" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04630" sboTerm="SBO:0000176" id="R_MAR04630" name="(R)-Mevalonate:NADP+ oxidoreductase (CoA acylating)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -222168,7 +222205,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04630">
+            <rdf:Description rdf:about="#R_MAR04630">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.34"/>
@@ -222181,20 +222218,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039x" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02131x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555x" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02039x" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02131x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555x" stoichiometry="2" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00167x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554x" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM00167x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554x" stoichiometry="2" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Hmgcr"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02029" sboTerm="SBO:0000176" id="MAR02029" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02029" sboTerm="SBO:0000176" id="R_MAR02029" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -222202,7 +222239,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02029">
+            <rdf:Description rdf:about="#R_MAR02029">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.14.1"/>
@@ -222213,13 +222250,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02969c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02969c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00432c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00432c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -222229,7 +222266,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02030" sboTerm="SBO:0000176" id="MAR02030" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02030" sboTerm="SBO:0000176" id="R_MAR02030" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -222237,7 +222274,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02030">
+            <rdf:Description rdf:about="#R_MAR02030">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.14.1"/>
@@ -222248,13 +222285,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00432c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00432c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00434c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM00434c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -222264,7 +222301,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02031" sboTerm="SBO:0000176" id="MAR02031" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02031" sboTerm="SBO:0000176" id="R_MAR02031" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -222272,7 +222309,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02031">
+            <rdf:Description rdf:about="#R_MAR02031">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.14.1"/>
@@ -222284,15 +222321,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00434c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00434c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01787c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01833c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01787c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01833c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -222302,7 +222339,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02032" sboTerm="SBO:0000176" id="MAR02032" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02032" sboTerm="SBO:0000176" id="R_MAR02032" name="19-hydroxyandrostenedione,NADPH---hemoprotein reductase:oxygen 19-oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -222310,7 +222347,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02032">
+            <rdf:Description rdf:about="#R_MAR02032">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.14.1"/>
@@ -222322,13 +222359,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00971c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00971c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00431c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00431c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -222338,7 +222375,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02033" sboTerm="SBO:0000176" id="MAR02033" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02033" sboTerm="SBO:0000176" id="R_MAR02033" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -222346,7 +222383,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02033">
+            <rdf:Description rdf:about="#R_MAR02033">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.14.1"/>
@@ -222357,13 +222394,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00431c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00431c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00433c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM00433c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -222373,7 +222410,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02034" sboTerm="SBO:0000176" id="MAR02034" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02034" sboTerm="SBO:0000176" id="R_MAR02034" name="19-oxoandrostenedione,NADPH---hemoprotein reductase:oxygen oxidoreductase (aromatizing, formate-forming)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -222381,7 +222418,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02034">
+            <rdf:Description rdf:about="#R_MAR02034">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.14.1"/>
@@ -222394,15 +222431,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00433c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00433c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01790c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01833c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01790c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01833c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -222412,7 +222449,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02036" sboTerm="SBO:0000176" id="MAR02036" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02036" sboTerm="SBO:0000176" id="R_MAR02036" name="Estradiol-17beta:NADP+ 17-oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -222421,7 +222458,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02036">
+            <rdf:Description rdf:about="#R_MAR02036">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.62"/>
@@ -222435,13 +222472,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01790c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01790c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01787c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01787c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -222452,7 +222489,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02037" sboTerm="SBO:0000176" id="MAR02037" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02037" sboTerm="SBO:0000176" id="R_MAR02037" name="3&apos;-Phosphoadenylylsulfate:estrone 3-sulfotransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 2</p>
@@ -222460,7 +222497,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02037">
+            <rdf:Description rdf:about="#R_MAR02037">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.8.2.4"/>
@@ -222473,19 +222510,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01790c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02682c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01790c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02682c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01789c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02681c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01789c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02681c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="St1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02042" sboTerm="SBO:0000176" id="MAR02042" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02042" sboTerm="SBO:0000176" id="R_MAR02042" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -222494,7 +222531,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02042">
+            <rdf:Description rdf:about="#R_MAR02042">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.14.1"/>
@@ -222507,15 +222544,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01787c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01787c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00649c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00649c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -222525,7 +222562,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02043" sboTerm="SBO:0000176" id="MAR02043" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02043" sboTerm="SBO:0000176" id="R_MAR02043" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -222534,7 +222571,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02043">
+            <rdf:Description rdf:about="#R_MAR02043">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.14.1"/>
@@ -222547,15 +222584,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01787r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01787r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00649r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00649r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -222565,7 +222602,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02046" sboTerm="SBO:0000176" id="MAR02046" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02046" sboTerm="SBO:0000176" id="R_MAR02046" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -222574,7 +222611,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02046">
+            <rdf:Description rdf:about="#R_MAR02046">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.13.67"/>
@@ -222586,15 +222623,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01787c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01787c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00986c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00986c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -222603,7 +222640,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02047" sboTerm="SBO:0000176" id="MAR02047" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02047" sboTerm="SBO:0000176" id="R_MAR02047" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -222612,7 +222649,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02047">
+            <rdf:Description rdf:about="#R_MAR02047">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.13.67"/>
@@ -222623,15 +222660,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01787r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01787r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00986r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00986r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -222640,7 +222677,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02049" sboTerm="SBO:0000176" id="MAR02049" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02049" sboTerm="SBO:0000176" id="R_MAR02049" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -222649,7 +222686,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02049">
+            <rdf:Description rdf:about="#R_MAR02049">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.13.67"/>
@@ -222661,15 +222698,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01790c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01790c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01000c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01000c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -222678,7 +222715,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02050" sboTerm="SBO:0000176" id="MAR02050" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02050" sboTerm="SBO:0000176" id="R_MAR02050" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -222687,7 +222724,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02050">
+            <rdf:Description rdf:about="#R_MAR02050">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.13.67"/>
@@ -222699,15 +222736,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01790l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01790l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01000l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01000l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -222716,7 +222753,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02051" sboTerm="SBO:0000176" id="MAR02051" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02051" sboTerm="SBO:0000176" id="R_MAR02051" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -222725,7 +222762,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02051">
+            <rdf:Description rdf:about="#R_MAR02051">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.13.67"/>
@@ -222737,15 +222774,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01790r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01790r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01000r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01000r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -222754,7 +222791,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02053" sboTerm="SBO:0000176" id="MAR02053" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02053" sboTerm="SBO:0000176" id="R_MAR02053" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -222763,7 +222800,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02053">
+            <rdf:Description rdf:about="#R_MAR02053">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.14.1"/>
@@ -222776,15 +222813,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01790c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01790c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00400c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00400c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -222794,7 +222831,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02054" sboTerm="SBO:0000176" id="MAR02054" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02054" sboTerm="SBO:0000176" id="R_MAR02054" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -222803,7 +222840,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02054">
+            <rdf:Description rdf:about="#R_MAR02054">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.14.1"/>
@@ -222816,15 +222853,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01790r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01790r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00400r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00400r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -222834,7 +222871,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02055" sboTerm="SBO:0000176" id="MAR02055" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02055" sboTerm="SBO:0000176" id="R_MAR02055" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -222843,7 +222880,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02055">
+            <rdf:Description rdf:about="#R_MAR02055">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.13.67"/>
@@ -222856,15 +222893,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01790c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01790c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00650c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00650c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -222873,7 +222910,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02056" sboTerm="SBO:0000176" id="MAR02056" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02056" sboTerm="SBO:0000176" id="R_MAR02056" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -222882,7 +222919,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02056">
+            <rdf:Description rdf:about="#R_MAR02056">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.13.67"/>
@@ -222895,15 +222932,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01790l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01790l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00650l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00650l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -222912,7 +222949,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02057" sboTerm="SBO:0000176" id="MAR02057" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02057" sboTerm="SBO:0000176" id="R_MAR02057" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -222921,7 +222958,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02057">
+            <rdf:Description rdf:about="#R_MAR02057">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.13.67"/>
@@ -222934,15 +222971,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01790r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01790r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00650r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00650r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -222951,7 +222988,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02061" sboTerm="SBO:0000176" id="MAR02061" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02061" sboTerm="SBO:0000176" id="R_MAR02061" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -222959,7 +222996,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02061">
+            <rdf:Description rdf:about="#R_MAR02061">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.11.1.7"/>
@@ -222972,13 +223009,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00650c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02041c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00650c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01792c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01792c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -222988,7 +223025,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02062" sboTerm="SBO:0000176" id="MAR02062" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02062" sboTerm="SBO:0000176" id="R_MAR02062" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -222996,7 +223033,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02062">
+            <rdf:Description rdf:about="#R_MAR02062">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.11.1.7"/>
@@ -223009,13 +223046,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00650l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02041l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00650l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01792l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040l" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01792l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="2" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -223025,7 +223062,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02063" sboTerm="SBO:0000176" id="MAR02063" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02063" sboTerm="SBO:0000176" id="R_MAR02063" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -223033,7 +223070,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02063">
+            <rdf:Description rdf:about="#R_MAR02063">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.11.1.7"/>
@@ -223046,13 +223083,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00650r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02041r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00650r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01792r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040r" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01792r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="2" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -223062,7 +223099,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02064" sboTerm="SBO:0000176" id="MAR02064" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02064" sboTerm="SBO:0000176" id="R_MAR02064" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -223071,7 +223108,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02064">
+            <rdf:Description rdf:about="#R_MAR02064">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR103532"/>
@@ -223082,16 +223119,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01792c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01792c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01791c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02631c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01791c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02631c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR02068" sboTerm="SBO:0000176" id="MAR02068" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02068" sboTerm="SBO:0000176" id="R_MAR02068" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -223100,7 +223137,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02068">
+            <rdf:Description rdf:about="#R_MAR02068">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.5.1.18"/>
@@ -223112,11 +223149,11 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00651c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00651c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01791c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02026c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01791c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -223130,7 +223167,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02069" sboTerm="SBO:0000176" id="MAR02069" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02069" sboTerm="SBO:0000176" id="R_MAR02069" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -223139,7 +223176,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02069">
+            <rdf:Description rdf:about="#R_MAR02069">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.5.1.18"/>
@@ -223151,11 +223188,11 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00651m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00651m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01791m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02026m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01791m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -223169,7 +223206,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02070" sboTerm="SBO:0000176" id="MAR02070" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02070" sboTerm="SBO:0000176" id="R_MAR02070" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -223178,7 +223215,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02070">
+            <rdf:Description rdf:about="#R_MAR02070">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.5.1.18"/>
@@ -223190,11 +223227,11 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00651r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00651r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01791r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02026r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01791r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -223208,7 +223245,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02071" sboTerm="SBO:0000176" id="MAR02071" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02071" sboTerm="SBO:0000176" id="R_MAR02071" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -223217,7 +223254,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02071">
+            <rdf:Description rdf:about="#R_MAR02071">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.5.1.18"/>
@@ -223229,11 +223266,11 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00651x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00651x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01791x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02026x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01791x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -223247,7 +223284,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02072" sboTerm="SBO:0000176" id="MAR02072" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02072" sboTerm="SBO:0000176" id="R_MAR02072" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -223256,7 +223293,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02072">
+            <rdf:Description rdf:about="#R_MAR02072">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.5.1.18"/>
@@ -223268,11 +223305,11 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00652c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00652c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01791c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02026c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01791c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -223286,7 +223323,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02073" sboTerm="SBO:0000176" id="MAR02073" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02073" sboTerm="SBO:0000176" id="R_MAR02073" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -223295,7 +223332,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02073">
+            <rdf:Description rdf:about="#R_MAR02073">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.5.1.18"/>
@@ -223307,11 +223344,11 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00652m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00652m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01791m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02026m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01791m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -223325,7 +223362,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02074" sboTerm="SBO:0000176" id="MAR02074" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02074" sboTerm="SBO:0000176" id="R_MAR02074" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -223334,7 +223371,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02074">
+            <rdf:Description rdf:about="#R_MAR02074">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.5.1.18"/>
@@ -223346,11 +223383,11 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00652r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00652r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01791r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02026r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01791r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -223364,7 +223401,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02075" sboTerm="SBO:0000176" id="MAR02075" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02075" sboTerm="SBO:0000176" id="R_MAR02075" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -223373,7 +223410,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02075">
+            <rdf:Description rdf:about="#R_MAR02075">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.5.1.18"/>
@@ -223385,11 +223422,11 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00652x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00652x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01791x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02026x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01791x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -223403,7 +223440,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02076" sboTerm="SBO:0000176" id="MAR02076" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02076" sboTerm="SBO:0000176" id="R_MAR02076" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -223411,7 +223448,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02076">
+            <rdf:Description rdf:about="#R_MAR02076">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.11.1.7"/>
@@ -223424,13 +223461,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01000c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02041c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01000c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01794c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01794c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -223440,7 +223477,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02077" sboTerm="SBO:0000176" id="MAR02077" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02077" sboTerm="SBO:0000176" id="R_MAR02077" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -223448,7 +223485,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02077">
+            <rdf:Description rdf:about="#R_MAR02077">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.11.1.7"/>
@@ -223461,13 +223498,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01000l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02041l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01000l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01794l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040l" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01794l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="2" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -223477,7 +223514,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02078" sboTerm="SBO:0000176" id="MAR02078" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02078" sboTerm="SBO:0000176" id="R_MAR02078" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -223485,7 +223522,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02078">
+            <rdf:Description rdf:about="#R_MAR02078">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.11.1.7"/>
@@ -223498,13 +223535,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01000r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02041r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01000r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01794r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040r" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01794r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="2" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -223514,7 +223551,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02079" sboTerm="SBO:0000176" id="MAR02079" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02079" sboTerm="SBO:0000176" id="R_MAR02079" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -223523,7 +223560,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02079">
+            <rdf:Description rdf:about="#R_MAR02079">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR103533"/>
@@ -223534,16 +223571,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01794c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01794c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01793c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02631c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01793c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02631c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR02083" sboTerm="SBO:0000176" id="MAR02083" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02083" sboTerm="SBO:0000176" id="R_MAR02083" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -223552,7 +223589,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02083">
+            <rdf:Description rdf:about="#R_MAR02083">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.5.1.18"/>
@@ -223564,11 +223601,11 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01001c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01001c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01793c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02026c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01793c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -223582,7 +223619,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02084" sboTerm="SBO:0000176" id="MAR02084" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02084" sboTerm="SBO:0000176" id="R_MAR02084" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -223591,7 +223628,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02084">
+            <rdf:Description rdf:about="#R_MAR02084">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.5.1.18"/>
@@ -223603,11 +223640,11 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01001m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01001m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01793m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02026m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01793m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -223621,7 +223658,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02085" sboTerm="SBO:0000176" id="MAR02085" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02085" sboTerm="SBO:0000176" id="R_MAR02085" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -223630,7 +223667,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02085">
+            <rdf:Description rdf:about="#R_MAR02085">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.5.1.18"/>
@@ -223642,11 +223679,11 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01001r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01001r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01793r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02026r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01793r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -223660,7 +223697,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02086" sboTerm="SBO:0000176" id="MAR02086" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02086" sboTerm="SBO:0000176" id="R_MAR02086" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -223669,7 +223706,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02086">
+            <rdf:Description rdf:about="#R_MAR02086">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.5.1.18"/>
@@ -223681,11 +223718,11 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01001x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01001x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01793x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02026x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01793x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -223699,7 +223736,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02088" sboTerm="SBO:0000176" id="MAR02088" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02088" sboTerm="SBO:0000176" id="R_MAR02088" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -223707,7 +223744,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02088">
+            <rdf:Description rdf:about="#R_MAR02088">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.11.1.7"/>
@@ -223720,12 +223757,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00413c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM00413c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00986c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02041c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00986c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -223735,7 +223772,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02089" sboTerm="SBO:0000176" id="MAR02089" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02089" sboTerm="SBO:0000176" id="R_MAR02089" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -223743,7 +223780,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02089">
+            <rdf:Description rdf:about="#R_MAR02089">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.11.1.7"/>
@@ -223756,12 +223793,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00413l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040l" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM00413l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="2" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00986l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02041l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00986l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -223771,7 +223808,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02091" sboTerm="SBO:0000176" id="MAR02091" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02091" sboTerm="SBO:0000176" id="R_MAR02091" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -223780,7 +223817,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02091">
+            <rdf:Description rdf:about="#R_MAR02091">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR103535"/>
@@ -223791,15 +223828,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00413c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00413c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00412c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02631c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00412c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02631c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR02095" sboTerm="SBO:0000176" id="MAR02095" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02095" sboTerm="SBO:0000176" id="R_MAR02095" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -223808,7 +223845,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02095">
+            <rdf:Description rdf:about="#R_MAR02095">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.5.1.18"/>
@@ -223820,11 +223857,11 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00412c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02026c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00412c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00987c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00987c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -223838,7 +223875,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02096" sboTerm="SBO:0000176" id="MAR02096" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02096" sboTerm="SBO:0000176" id="R_MAR02096" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -223847,7 +223884,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02096">
+            <rdf:Description rdf:about="#R_MAR02096">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.5.1.18"/>
@@ -223859,11 +223896,11 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00412m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02026m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00412m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00987m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00987m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -223877,7 +223914,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02097" sboTerm="SBO:0000176" id="MAR02097" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02097" sboTerm="SBO:0000176" id="R_MAR02097" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -223886,7 +223923,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02097">
+            <rdf:Description rdf:about="#R_MAR02097">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.5.1.18"/>
@@ -223898,11 +223935,11 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00412r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02026r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00412r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00987r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00987r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -223916,7 +223953,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02098" sboTerm="SBO:0000176" id="MAR02098" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02098" sboTerm="SBO:0000176" id="R_MAR02098" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -223925,7 +223962,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02098">
+            <rdf:Description rdf:about="#R_MAR02098">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.5.1.18"/>
@@ -223937,11 +223974,11 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00412x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02026x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00412x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00987x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00987x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -223955,7 +223992,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02099" sboTerm="SBO:0000176" id="MAR02099" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02099" sboTerm="SBO:0000176" id="R_MAR02099" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -223963,7 +224000,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02099">
+            <rdf:Description rdf:about="#R_MAR02099">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.11.1.7"/>
@@ -223976,13 +224013,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00411c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM00411c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00649c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02041c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00649c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -223992,7 +224029,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02100" sboTerm="SBO:0000176" id="MAR02100" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02100" sboTerm="SBO:0000176" id="R_MAR02100" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -224000,7 +224037,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02100">
+            <rdf:Description rdf:about="#R_MAR02100">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.11.1.7"/>
@@ -224013,13 +224050,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00411l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040l" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM00411l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="2" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00649l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02041l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00649l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -224029,7 +224066,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02102" sboTerm="SBO:0000176" id="MAR02102" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02102" sboTerm="SBO:0000176" id="R_MAR02102" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -224038,7 +224075,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02102">
+            <rdf:Description rdf:about="#R_MAR02102">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR103534"/>
@@ -224049,16 +224086,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00411c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00411c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00410c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02631c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00410c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02631c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR02106" sboTerm="SBO:0000176" id="MAR02106" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02106" sboTerm="SBO:0000176" id="R_MAR02106" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -224067,7 +224104,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02106">
+            <rdf:Description rdf:about="#R_MAR02106">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.5.1.18"/>
@@ -224079,11 +224116,11 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00410c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02026c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00410c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00642c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00642c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -224097,7 +224134,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02107" sboTerm="SBO:0000176" id="MAR02107" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02107" sboTerm="SBO:0000176" id="R_MAR02107" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -224106,7 +224143,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02107">
+            <rdf:Description rdf:about="#R_MAR02107">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.5.1.18"/>
@@ -224118,11 +224155,11 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00410m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02026m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00410m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00642m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00642m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -224136,7 +224173,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02108" sboTerm="SBO:0000176" id="MAR02108" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02108" sboTerm="SBO:0000176" id="R_MAR02108" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -224145,7 +224182,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02108">
+            <rdf:Description rdf:about="#R_MAR02108">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.5.1.18"/>
@@ -224157,11 +224194,11 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00410r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02026r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00410r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00642r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00642r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -224175,7 +224212,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02109" sboTerm="SBO:0000176" id="MAR02109" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02109" sboTerm="SBO:0000176" id="R_MAR02109" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -224184,7 +224221,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02109">
+            <rdf:Description rdf:about="#R_MAR02109">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.5.1.18"/>
@@ -224196,11 +224233,11 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00410x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02026x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00410x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00642x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00642x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -224214,7 +224251,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02110" sboTerm="SBO:0000176" id="MAR02110" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02110" sboTerm="SBO:0000176" id="R_MAR02110" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -224223,7 +224260,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02110">
+            <rdf:Description rdf:about="#R_MAR02110">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.5.1.18"/>
@@ -224235,11 +224272,11 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00410c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02026c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00410c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00641c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00641c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -224253,7 +224290,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02111" sboTerm="SBO:0000176" id="MAR02111" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02111" sboTerm="SBO:0000176" id="R_MAR02111" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -224262,7 +224299,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02111">
+            <rdf:Description rdf:about="#R_MAR02111">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.5.1.18"/>
@@ -224274,11 +224311,11 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00410m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02026m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00410m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00641m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00641m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -224292,7 +224329,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02112" sboTerm="SBO:0000176" id="MAR02112" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02112" sboTerm="SBO:0000176" id="R_MAR02112" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -224301,7 +224338,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02112">
+            <rdf:Description rdf:about="#R_MAR02112">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.5.1.18"/>
@@ -224313,11 +224350,11 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00410r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02026r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00410r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00641r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00641r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -224331,7 +224368,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02113" sboTerm="SBO:0000176" id="MAR02113" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02113" sboTerm="SBO:0000176" id="R_MAR02113" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -224340,7 +224377,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02113">
+            <rdf:Description rdf:about="#R_MAR02113">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.5.1.18"/>
@@ -224352,11 +224389,11 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00410x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02026x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00410x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00641x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00641x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -224370,7 +224407,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03537" sboTerm="SBO:0000176" id="MAR03537" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03537" sboTerm="SBO:0000176" id="R_MAR03537" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -224378,7 +224415,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03537">
+            <rdf:Description rdf:about="#R_MAR03537">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_3537"/>
@@ -224388,79 +224425,79 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM10004l" stoichiometry="1" constant="true"/>
-        </listOfReactants>
-        <listOfProducts>
-          <speciesReference species="MAM01452l" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM01453l" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM01454l" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM01455l" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM01456l" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM01457l" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM01458l" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM01459l" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM01460l" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM01461l" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM01462l" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM01463l" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM01464l" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM01465l" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM01466l" stoichiometry="0.0041" constant="true"/>
-          <speciesReference species="MAM01467l" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM01468l" stoichiometry="0.0071" constant="true"/>
-          <speciesReference species="MAM01469l" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM01470l" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM01471l" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM01472l" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM01473l" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM01474l" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM01475l" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM01476l" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM01477l" stoichiometry="0.0406" constant="true"/>
-          <speciesReference species="MAM01478l" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM01479l" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM01480l" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM01481l" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM01482l" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM01483l" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM01484l" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM01485l" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM01486l" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM01487l" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM01488l" stoichiometry="0.0518" constant="true"/>
-          <speciesReference species="MAM01489l" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM01490l" stoichiometry="0.005" constant="true"/>
-          <speciesReference species="MAM01491l" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM01492l" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM01493l" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM01494l" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM01495l" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM01496l" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM01497l" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM01498l" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM01499l" stoichiometry="0.5254" constant="true"/>
-          <speciesReference species="MAM01500l" stoichiometry="0.0061" constant="true"/>
-          <speciesReference species="MAM01501l" stoichiometry="0.0081" constant="true"/>
-          <speciesReference species="MAM01502l" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM01503l" stoichiometry="0.1958" constant="true"/>
-          <speciesReference species="MAM01504l" stoichiometry="0.138" constant="true"/>
-          <speciesReference species="MAM01505l" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM01506l" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM01507l" stoichiometry="0.0132" constant="true"/>
-          <speciesReference species="MAM01508l" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM01509l" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM01510l" stoichiometry="0.0001" constant="true"/>
-        </listOfProducts>
-      </reaction>
-      <reaction metaid="MAR03538" sboTerm="SBO:0000176" id="MAR03538" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
-        <notes>
-          <body xmlns="http://www.w3.org/1999/xhtml">
-            <p>Confidence Level: 0</p>
-          </body>
-        </notes>
-        <annotation>
-          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03538">
+          <speciesReference species="M_MAM10004l" stoichiometry="1" constant="true"/>
+        </listOfReactants>
+        <listOfProducts>
+          <speciesReference species="M_MAM01452l" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM01453l" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM01454l" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM01455l" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM01456l" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM01457l" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM01458l" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM01459l" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM01460l" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM01461l" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM01462l" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM01463l" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM01464l" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM01465l" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM01466l" stoichiometry="0.0041" constant="true"/>
+          <speciesReference species="M_MAM01467l" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM01468l" stoichiometry="0.0071" constant="true"/>
+          <speciesReference species="M_MAM01469l" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM01470l" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM01471l" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM01472l" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM01473l" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM01474l" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM01475l" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM01476l" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM01477l" stoichiometry="0.0406" constant="true"/>
+          <speciesReference species="M_MAM01478l" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM01479l" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM01480l" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM01481l" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM01482l" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM01483l" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM01484l" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM01485l" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM01486l" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM01487l" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM01488l" stoichiometry="0.0518" constant="true"/>
+          <speciesReference species="M_MAM01489l" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM01490l" stoichiometry="0.005" constant="true"/>
+          <speciesReference species="M_MAM01491l" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM01492l" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM01493l" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM01494l" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM01495l" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM01496l" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM01497l" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM01498l" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM01499l" stoichiometry="0.5254" constant="true"/>
+          <speciesReference species="M_MAM01500l" stoichiometry="0.0061" constant="true"/>
+          <speciesReference species="M_MAM01501l" stoichiometry="0.0081" constant="true"/>
+          <speciesReference species="M_MAM01502l" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM01503l" stoichiometry="0.1958" constant="true"/>
+          <speciesReference species="M_MAM01504l" stoichiometry="0.138" constant="true"/>
+          <speciesReference species="M_MAM01505l" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM01506l" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM01507l" stoichiometry="0.0132" constant="true"/>
+          <speciesReference species="M_MAM01508l" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM01509l" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM01510l" stoichiometry="0.0001" constant="true"/>
+        </listOfProducts>
+      </reaction>
+      <reaction metaid="R_MAR03538" sboTerm="SBO:0000176" id="R_MAR03538" name="Steryl-ester acylhydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+        <notes>
+          <body xmlns="http://www.w3.org/1999/xhtml">
+            <p>Confidence Level: 0</p>
+          </body>
+        </notes>
+        <annotation>
+          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+            <rdf:Description rdf:about="#R_MAR03538">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.13"/>
@@ -224473,13 +224510,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01498l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01498l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01450l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02344l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02344l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -224491,7 +224528,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03539" sboTerm="SBO:0000176" id="MAR03539" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03539" sboTerm="SBO:0000176" id="R_MAR03539" name="Steryl-ester acylhydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -224499,7 +224536,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03539">
+            <rdf:Description rdf:about="#R_MAR03539">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.13"/>
@@ -224512,13 +224549,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01510l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01510l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01450l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03051l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03051l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -224530,7 +224567,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03540" sboTerm="SBO:0000176" id="MAR03540" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03540" sboTerm="SBO:0000176" id="R_MAR03540" name="Steryl-ester acylhydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -224538,7 +224575,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03540">
+            <rdf:Description rdf:about="#R_MAR03540">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.13"/>
@@ -224551,13 +224588,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01501l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01501l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01450l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02494l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02494l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -224569,7 +224606,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03541" sboTerm="SBO:0000176" id="MAR03541" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03541" sboTerm="SBO:0000176" id="R_MAR03541" name="Steryl-ester acylhydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -224577,7 +224614,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03541">
+            <rdf:Description rdf:about="#R_MAR03541">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.13"/>
@@ -224590,13 +224627,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01487l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01487l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00128l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01450l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00128l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -224608,7 +224645,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03542" sboTerm="SBO:0000176" id="MAR03542" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03542" sboTerm="SBO:0000176" id="R_MAR03542" name="Steryl-ester acylhydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -224616,7 +224653,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03542">
+            <rdf:Description rdf:about="#R_MAR03542">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.13"/>
@@ -224629,13 +224666,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01479l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01479l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00117l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01450l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00117l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -224647,7 +224684,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03543" sboTerm="SBO:0000176" id="MAR03543" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03543" sboTerm="SBO:0000176" id="R_MAR03543" name="Steryl-ester acylhydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -224655,7 +224692,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03543">
+            <rdf:Description rdf:about="#R_MAR03543">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.13"/>
@@ -224668,13 +224705,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01470l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01470l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01450l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02745l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02745l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -224686,7 +224723,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03544" sboTerm="SBO:0000176" id="MAR03544" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03544" sboTerm="SBO:0000176" id="R_MAR03544" name="Steryl-ester acylhydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -224694,7 +224731,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03544">
+            <rdf:Description rdf:about="#R_MAR03544">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.13"/>
@@ -224707,13 +224744,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01506l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01506l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01450l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02690l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02690l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -224725,7 +224762,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03545" sboTerm="SBO:0000176" id="MAR03545" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03545" sboTerm="SBO:0000176" id="R_MAR03545" name="Steryl-ester acylhydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -224734,7 +224771,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03545">
+            <rdf:Description rdf:about="#R_MAR03545">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.13"/>
@@ -224748,13 +224785,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01504l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01504l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01450l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02674l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02674l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -224766,7 +224803,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03546" sboTerm="SBO:0000176" id="MAR03546" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03546" sboTerm="SBO:0000176" id="R_MAR03546" name="Steryl-ester acylhydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -224774,7 +224811,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03546">
+            <rdf:Description rdf:about="#R_MAR03546">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.13"/>
@@ -224787,13 +224824,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01477l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01477l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01197l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01450l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01197l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -224805,7 +224842,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03547" sboTerm="SBO:0000176" id="MAR03547" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03547" sboTerm="SBO:0000176" id="R_MAR03547" name="Steryl-ester acylhydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -224813,7 +224850,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03547">
+            <rdf:Description rdf:about="#R_MAR03547">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.13"/>
@@ -224826,13 +224863,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01505l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01505l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01450l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02675l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02675l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -224844,7 +224881,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03548" sboTerm="SBO:0000176" id="MAR03548" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03548" sboTerm="SBO:0000176" id="R_MAR03548" name="Steryl-ester acylhydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -224852,7 +224889,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03548">
+            <rdf:Description rdf:about="#R_MAR03548">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.13"/>
@@ -224865,13 +224902,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01495l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01495l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01450l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02456l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02456l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -224883,7 +224920,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03549" sboTerm="SBO:0000176" id="MAR03549" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03549" sboTerm="SBO:0000176" id="R_MAR03549" name="Steryl-ester acylhydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -224891,7 +224928,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03549">
+            <rdf:Description rdf:about="#R_MAR03549">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.13"/>
@@ -224904,13 +224941,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01454l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01454l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00003l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01450l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00003l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -224922,7 +224959,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03550" sboTerm="SBO:0000176" id="MAR03550" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03550" sboTerm="SBO:0000176" id="R_MAR03550" name="Steryl-ester acylhydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -224930,7 +224967,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03550">
+            <rdf:Description rdf:about="#R_MAR03550">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.13"/>
@@ -224943,13 +224980,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01485l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01485l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01238l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01450l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01238l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -224961,7 +224998,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03551" sboTerm="SBO:0000176" id="MAR03551" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03551" sboTerm="SBO:0000176" id="R_MAR03551" name="Steryl-ester acylhydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -224970,7 +225007,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03551">
+            <rdf:Description rdf:about="#R_MAR03551">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.13"/>
@@ -224983,13 +225020,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01507l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01507l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01450l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02938l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02938l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -225001,7 +225038,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03552" sboTerm="SBO:0000176" id="MAR03552" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03552" sboTerm="SBO:0000176" id="R_MAR03552" name="Steryl-ester acylhydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -225010,7 +225047,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03552">
+            <rdf:Description rdf:about="#R_MAR03552">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.13"/>
@@ -225024,13 +225061,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01503l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01503l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01450l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02646l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02646l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -225042,7 +225079,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03553" sboTerm="SBO:0000176" id="MAR03553" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03553" sboTerm="SBO:0000176" id="R_MAR03553" name="Steryl-ester acylhydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -225050,7 +225087,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03553">
+            <rdf:Description rdf:about="#R_MAR03553">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.13"/>
@@ -225063,13 +225100,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01464l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01464l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00019l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01450l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00019l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -225081,7 +225118,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03554" sboTerm="SBO:0000176" id="MAR03554" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03554" sboTerm="SBO:0000176" id="R_MAR03554" name="Steryl-ester acylhydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -225089,7 +225126,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03554">
+            <rdf:Description rdf:about="#R_MAR03554">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.13"/>
@@ -225101,13 +225138,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01489l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01489l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01450l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01585l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01585l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -225119,7 +225156,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03555" sboTerm="SBO:0000176" id="MAR03555" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03555" sboTerm="SBO:0000176" id="R_MAR03555" name="Steryl-ester acylhydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -225127,7 +225164,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03555">
+            <rdf:Description rdf:about="#R_MAR03555">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.13"/>
@@ -225140,13 +225177,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01486l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01486l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01450l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01778l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01778l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -225158,7 +225195,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03556" sboTerm="SBO:0000176" id="MAR03556" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03556" sboTerm="SBO:0000176" id="R_MAR03556" name="Steryl-ester acylhydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -225166,7 +225203,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03556">
+            <rdf:Description rdf:about="#R_MAR03556">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.13"/>
@@ -225179,13 +225216,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01478l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01478l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00115l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01450l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00115l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -225197,7 +225234,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03557" sboTerm="SBO:0000176" id="MAR03557" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03557" sboTerm="SBO:0000176" id="R_MAR03557" name="Steryl-ester acylhydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -225205,7 +225242,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03557">
+            <rdf:Description rdf:about="#R_MAR03557">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.13"/>
@@ -225218,13 +225255,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01474l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01474l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00104l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01450l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00104l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -225236,7 +225273,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03558" sboTerm="SBO:0000176" id="MAR03558" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03558" sboTerm="SBO:0000176" id="R_MAR03558" name="Steryl-ester acylhydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -225244,7 +225281,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03558">
+            <rdf:Description rdf:about="#R_MAR03558">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.13"/>
@@ -225257,13 +225294,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01502l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01502l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01450l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02613l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02613l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -225275,7 +225312,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03559" sboTerm="SBO:0000176" id="MAR03559" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03559" sboTerm="SBO:0000176" id="R_MAR03559" name="Steryl-ester acylhydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -225283,7 +225320,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03559">
+            <rdf:Description rdf:about="#R_MAR03559">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.13"/>
@@ -225296,13 +225333,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01492l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01492l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01450l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01771l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01771l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -225314,7 +225351,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03560" sboTerm="SBO:0000176" id="MAR03560" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03560" sboTerm="SBO:0000176" id="R_MAR03560" name="Steryl-ester acylhydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -225322,7 +225359,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03560">
+            <rdf:Description rdf:about="#R_MAR03560">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.13"/>
@@ -225335,13 +225372,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01463l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01463l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00017l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01450l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00017l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -225353,7 +225390,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03561" sboTerm="SBO:0000176" id="MAR03561" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03561" sboTerm="SBO:0000176" id="R_MAR03561" name="Steryl-ester acylhydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -225361,7 +225398,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03561">
+            <rdf:Description rdf:about="#R_MAR03561">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.13"/>
@@ -225374,13 +225411,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01458l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01458l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01450l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01584l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01584l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -225392,7 +225429,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03562" sboTerm="SBO:0000176" id="MAR03562" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03562" sboTerm="SBO:0000176" id="R_MAR03562" name="Steryl-ester acylhydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -225400,7 +225437,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03562">
+            <rdf:Description rdf:about="#R_MAR03562">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.13"/>
@@ -225413,13 +225450,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01484l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01484l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01235l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01450l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01235l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -225431,7 +225468,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03563" sboTerm="SBO:0000176" id="MAR03563" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03563" sboTerm="SBO:0000176" id="R_MAR03563" name="Steryl-ester acylhydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -225439,7 +225476,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03563">
+            <rdf:Description rdf:about="#R_MAR03563">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.13"/>
@@ -225452,13 +225489,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01481l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01481l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01207l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01450l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01207l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -225470,7 +225507,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03564" sboTerm="SBO:0000176" id="MAR03564" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03564" sboTerm="SBO:0000176" id="R_MAR03564" name="Steryl-ester acylhydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -225478,7 +225515,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03564">
+            <rdf:Description rdf:about="#R_MAR03564">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.13"/>
@@ -225491,13 +225528,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01469l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01469l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01450l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02457l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02457l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -225509,7 +225546,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03565" sboTerm="SBO:0000176" id="MAR03565" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03565" sboTerm="SBO:0000176" id="R_MAR03565" name="Steryl-ester acylhydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -225517,7 +225554,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03565">
+            <rdf:Description rdf:about="#R_MAR03565">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.13"/>
@@ -225530,13 +225567,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01494l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01494l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01450l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02053l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02053l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -225548,7 +225585,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03566" sboTerm="SBO:0000176" id="MAR03566" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03566" sboTerm="SBO:0000176" id="R_MAR03566" name="Steryl-ester acylhydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -225556,7 +225593,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03566">
+            <rdf:Description rdf:about="#R_MAR03566">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.13"/>
@@ -225569,13 +225606,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01491l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01491l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01373l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01450l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01373l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -225587,7 +225624,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03567" sboTerm="SBO:0000176" id="MAR03567" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03567" sboTerm="SBO:0000176" id="R_MAR03567" name="Steryl-ester acylhydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -225595,7 +225632,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03567">
+            <rdf:Description rdf:about="#R_MAR03567">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.13"/>
@@ -225608,13 +225645,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01462l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01462l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01450l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01583l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01583l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -225626,7 +225663,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03568" sboTerm="SBO:0000176" id="MAR03568" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03568" sboTerm="SBO:0000176" id="R_MAR03568" name="Steryl-ester acylhydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -225634,7 +225671,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03568">
+            <rdf:Description rdf:about="#R_MAR03568">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.13"/>
@@ -225647,13 +225684,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01457l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01457l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01450l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01582l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01582l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -225665,7 +225702,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03569" sboTerm="SBO:0000176" id="MAR03569" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03569" sboTerm="SBO:0000176" id="R_MAR03569" name="Steryl-ester acylhydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -225673,7 +225710,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03569">
+            <rdf:Description rdf:about="#R_MAR03569">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.13"/>
@@ -225686,13 +225723,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01509l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01509l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01450l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03045l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03045l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -225704,7 +225741,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03570" sboTerm="SBO:0000176" id="MAR03570" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03570" sboTerm="SBO:0000176" id="R_MAR03570" name="Steryl-ester acylhydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -225712,7 +225749,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03570">
+            <rdf:Description rdf:about="#R_MAR03570">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.13"/>
@@ -225725,13 +225762,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01508l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01508l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01450l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02385l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02385l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -225743,7 +225780,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03571" sboTerm="SBO:0000176" id="MAR03571" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03571" sboTerm="SBO:0000176" id="R_MAR03571" name="Steryl-ester acylhydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -225751,7 +225788,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03571">
+            <rdf:Description rdf:about="#R_MAR03571">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.13"/>
@@ -225764,13 +225801,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01465l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01465l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01450l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02564l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02564l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -225782,7 +225819,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03572" sboTerm="SBO:0000176" id="MAR03572" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03572" sboTerm="SBO:0000176" id="R_MAR03572" name="Steryl-ester acylhydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -225790,7 +225827,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03572">
+            <rdf:Description rdf:about="#R_MAR03572">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.13"/>
@@ -225803,13 +225840,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01496l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01496l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01432l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01450l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01432l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -225821,7 +225858,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03573" sboTerm="SBO:0000176" id="MAR03573" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03573" sboTerm="SBO:0000176" id="R_MAR03573" name="Steryl-ester acylhydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -225829,7 +225866,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03573">
+            <rdf:Description rdf:about="#R_MAR03573">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.13"/>
@@ -225842,13 +225879,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01497l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01497l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01450l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03153l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03153l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -225860,7 +225897,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03574" sboTerm="SBO:0000176" id="MAR03574" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03574" sboTerm="SBO:0000176" id="R_MAR03574" name="Steryl-ester acylhydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -225868,7 +225905,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03574">
+            <rdf:Description rdf:about="#R_MAR03574">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.13"/>
@@ -225881,13 +225918,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01500l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01500l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01450l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02389l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02389l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -225899,7 +225936,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03575" sboTerm="SBO:0000176" id="MAR03575" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03575" sboTerm="SBO:0000176" id="R_MAR03575" name="Steryl-ester acylhydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -225907,7 +225944,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03575">
+            <rdf:Description rdf:about="#R_MAR03575">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.13"/>
@@ -225920,13 +225957,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01473l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01473l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01450l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02939l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02939l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -225938,7 +225975,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03576" sboTerm="SBO:0000176" id="MAR03576" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03576" sboTerm="SBO:0000176" id="R_MAR03576" name="Steryl-ester acylhydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -225946,7 +225983,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03576">
+            <rdf:Description rdf:about="#R_MAR03576">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.13"/>
@@ -225959,13 +225996,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01480l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01480l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01450l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02648l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02648l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -225977,7 +226014,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03577" sboTerm="SBO:0000176" id="MAR03577" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03577" sboTerm="SBO:0000176" id="R_MAR03577" name="Steryl-ester acylhydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -225985,7 +226022,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03577">
+            <rdf:Description rdf:about="#R_MAR03577">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.13"/>
@@ -225998,13 +226035,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01468l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01468l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01450l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01784l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01784l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -226016,7 +226053,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03578" sboTerm="SBO:0000176" id="MAR03578" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03578" sboTerm="SBO:0000176" id="R_MAR03578" name="Steryl-ester acylhydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -226024,7 +226061,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03578">
+            <rdf:Description rdf:about="#R_MAR03578">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.13"/>
@@ -226037,13 +226074,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01475l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01475l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01450l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01741l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01741l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -226055,7 +226092,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03579" sboTerm="SBO:0000176" id="MAR03579" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03579" sboTerm="SBO:0000176" id="R_MAR03579" name="Steryl-ester acylhydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -226063,7 +226100,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03579">
+            <rdf:Description rdf:about="#R_MAR03579">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.13"/>
@@ -226076,13 +226113,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01482l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01482l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00135l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01450l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00135l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -226094,7 +226131,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03580" sboTerm="SBO:0000176" id="MAR03580" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03580" sboTerm="SBO:0000176" id="R_MAR03580" name="Steryl-ester acylhydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -226102,7 +226139,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03580">
+            <rdf:Description rdf:about="#R_MAR03580">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.13"/>
@@ -226115,13 +226152,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01471l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01471l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00114l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01450l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00114l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -226133,7 +226170,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03581" sboTerm="SBO:0000176" id="MAR03581" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03581" sboTerm="SBO:0000176" id="R_MAR03581" name="Steryl-ester acylhydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -226141,7 +226178,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03581">
+            <rdf:Description rdf:about="#R_MAR03581">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.13"/>
@@ -226154,13 +226191,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01466l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01466l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01450l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01689l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01689l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -226172,7 +226209,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03582" sboTerm="SBO:0000176" id="MAR03582" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03582" sboTerm="SBO:0000176" id="R_MAR03582" name="Steryl-ester acylhydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -226180,7 +226217,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03582">
+            <rdf:Description rdf:about="#R_MAR03582">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.13"/>
@@ -226193,13 +226230,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01455l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01455l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00010l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01450l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00010l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -226211,7 +226248,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03583" sboTerm="SBO:0000176" id="MAR03583" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03583" sboTerm="SBO:0000176" id="R_MAR03583" name="Steryl-ester acylhydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -226219,7 +226256,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03583">
+            <rdf:Description rdf:about="#R_MAR03583">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.13"/>
@@ -226232,13 +226269,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01460l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01460l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00341l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01450l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00341l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -226250,7 +226287,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03584" sboTerm="SBO:0000176" id="MAR03584" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03584" sboTerm="SBO:0000176" id="R_MAR03584" name="Steryl-ester acylhydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -226258,7 +226295,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03584">
+            <rdf:Description rdf:about="#R_MAR03584">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.13"/>
@@ -226271,13 +226308,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01452l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01452l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00260l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01450l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00260l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -226289,7 +226326,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03585" sboTerm="SBO:0000176" id="MAR03585" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03585" sboTerm="SBO:0000176" id="R_MAR03585" name="Steryl-ester acylhydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -226297,7 +226334,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03585">
+            <rdf:Description rdf:about="#R_MAR03585">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.13"/>
@@ -226310,13 +226347,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01459l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01459l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00315l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01450l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00315l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -226328,7 +226365,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03586" sboTerm="SBO:0000176" id="MAR03586" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03586" sboTerm="SBO:0000176" id="R_MAR03586" name="Steryl-ester acylhydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -226337,7 +226374,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03586">
+            <rdf:Description rdf:about="#R_MAR03586">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.13"/>
@@ -226351,13 +226388,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01499l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01499l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01450l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02387l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02387l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -226369,7 +226406,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03587" sboTerm="SBO:0000176" id="MAR03587" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03587" sboTerm="SBO:0000176" id="R_MAR03587" name="Steryl-ester acylhydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -226377,7 +226414,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03587">
+            <rdf:Description rdf:about="#R_MAR03587">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.13"/>
@@ -226390,13 +226427,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01493l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01493l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01450l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01932l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01932l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -226408,7 +226445,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03588" sboTerm="SBO:0000176" id="MAR03588" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03588" sboTerm="SBO:0000176" id="R_MAR03588" name="Steryl-ester acylhydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -226416,7 +226453,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03588">
+            <rdf:Description rdf:about="#R_MAR03588">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.13"/>
@@ -226429,13 +226466,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01490l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01490l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01450l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01696l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01696l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -226447,7 +226484,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03589" sboTerm="SBO:0000176" id="MAR03589" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03589" sboTerm="SBO:0000176" id="R_MAR03589" name="Steryl-ester acylhydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -226456,7 +226493,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03589">
+            <rdf:Description rdf:about="#R_MAR03589">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.13"/>
@@ -226470,13 +226507,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01488l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01488l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01362l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01450l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01362l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -226488,7 +226525,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03590" sboTerm="SBO:0000176" id="MAR03590" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03590" sboTerm="SBO:0000176" id="R_MAR03590" name="Steryl-ester acylhydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -226496,7 +226533,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03590">
+            <rdf:Description rdf:about="#R_MAR03590">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.13"/>
@@ -226509,13 +226546,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01476l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01476l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01291l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01450l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01291l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -226527,7 +226564,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03591" sboTerm="SBO:0000176" id="MAR03591" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03591" sboTerm="SBO:0000176" id="R_MAR03591" name="Steryl-ester acylhydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -226535,7 +226572,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03591">
+            <rdf:Description rdf:about="#R_MAR03591">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.13"/>
@@ -226548,13 +226585,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01483l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01483l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00132l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01450l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00132l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -226566,7 +226603,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03592" sboTerm="SBO:0000176" id="MAR03592" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03592" sboTerm="SBO:0000176" id="R_MAR03592" name="Steryl-ester acylhydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -226574,7 +226611,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03592">
+            <rdf:Description rdf:about="#R_MAR03592">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.13"/>
@@ -226587,13 +226624,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01472l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01472l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00111l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01450l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00111l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -226605,7 +226642,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03593" sboTerm="SBO:0000176" id="MAR03593" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03593" sboTerm="SBO:0000176" id="R_MAR03593" name="Steryl-ester acylhydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -226613,7 +226650,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03593">
+            <rdf:Description rdf:about="#R_MAR03593">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.13"/>
@@ -226626,13 +226663,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01467l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01467l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00094l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01450l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00094l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -226644,7 +226681,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03594" sboTerm="SBO:0000176" id="MAR03594" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03594" sboTerm="SBO:0000176" id="R_MAR03594" name="Steryl-ester acylhydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -226652,7 +226689,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03594">
+            <rdf:Description rdf:about="#R_MAR03594">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.13"/>
@@ -226665,13 +226702,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01456l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01456l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00008l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01450l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00008l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -226683,7 +226720,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03595" sboTerm="SBO:0000176" id="MAR03595" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03595" sboTerm="SBO:0000176" id="R_MAR03595" name="Steryl-ester acylhydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -226691,7 +226728,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03595">
+            <rdf:Description rdf:about="#R_MAR03595">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.13"/>
@@ -226704,13 +226741,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01461l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01461l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00021l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01450l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00021l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -226722,7 +226759,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03596" sboTerm="SBO:0000176" id="MAR03596" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03596" sboTerm="SBO:0000176" id="R_MAR03596" name="Steryl-ester acylhydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -226730,7 +226767,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03596">
+            <rdf:Description rdf:about="#R_MAR03596">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.13"/>
@@ -226743,13 +226780,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01453l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01453l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00265l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01450l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00265l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -226761,7 +226798,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03622" sboTerm="SBO:0000176" id="MAR03622" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03622" sboTerm="SBO:0000176" id="R_MAR03622" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -226769,7 +226806,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03622">
+            <rdf:Description rdf:about="#R_MAR03622">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_3622"/>
@@ -226779,79 +226816,79 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM10004r" stoichiometry="1" constant="true"/>
-        </listOfReactants>
-        <listOfProducts>
-          <speciesReference species="MAM01452r" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM01453r" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM01454r" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM01455r" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM01456r" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM01457r" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM01458r" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM01459r" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM01460r" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM01461r" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM01462r" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM01463r" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM01464r" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM01465r" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM01466r" stoichiometry="0.0041" constant="true"/>
-          <speciesReference species="MAM01467r" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM01468r" stoichiometry="0.0071" constant="true"/>
-          <speciesReference species="MAM01469r" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM01470r" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM01471r" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM01472r" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM01473r" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM01474r" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM01475r" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM01476r" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM01477r" stoichiometry="0.0406" constant="true"/>
-          <speciesReference species="MAM01478r" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM01479r" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM01480r" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM01481r" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM01482r" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM01483r" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM01484r" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM01485r" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM01486r" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM01487r" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM01488r" stoichiometry="0.0518" constant="true"/>
-          <speciesReference species="MAM01489r" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM01490r" stoichiometry="0.005" constant="true"/>
-          <speciesReference species="MAM01491r" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM01492r" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM01493r" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM01494r" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM01495r" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM01496r" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM01497r" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM01498r" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM01499r" stoichiometry="0.5254" constant="true"/>
-          <speciesReference species="MAM01500r" stoichiometry="0.0061" constant="true"/>
-          <speciesReference species="MAM01501r" stoichiometry="0.0081" constant="true"/>
-          <speciesReference species="MAM01502r" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM01503r" stoichiometry="0.1958" constant="true"/>
-          <speciesReference species="MAM01504r" stoichiometry="0.138" constant="true"/>
-          <speciesReference species="MAM01505r" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM01506r" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM01507r" stoichiometry="0.0132" constant="true"/>
-          <speciesReference species="MAM01508r" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM01509r" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM01510r" stoichiometry="0.0001" constant="true"/>
-        </listOfProducts>
-      </reaction>
-      <reaction metaid="MAR03625" sboTerm="SBO:0000176" id="MAR03625" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
-        <notes>
-          <body xmlns="http://www.w3.org/1999/xhtml">
-            <p>Confidence Level: 0</p>
-          </body>
-        </notes>
-        <annotation>
-          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03625">
+          <speciesReference species="M_MAM10004r" stoichiometry="1" constant="true"/>
+        </listOfReactants>
+        <listOfProducts>
+          <speciesReference species="M_MAM01452r" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM01453r" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM01454r" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM01455r" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM01456r" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM01457r" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM01458r" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM01459r" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM01460r" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM01461r" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM01462r" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM01463r" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM01464r" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM01465r" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM01466r" stoichiometry="0.0041" constant="true"/>
+          <speciesReference species="M_MAM01467r" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM01468r" stoichiometry="0.0071" constant="true"/>
+          <speciesReference species="M_MAM01469r" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM01470r" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM01471r" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM01472r" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM01473r" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM01474r" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM01475r" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM01476r" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM01477r" stoichiometry="0.0406" constant="true"/>
+          <speciesReference species="M_MAM01478r" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM01479r" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM01480r" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM01481r" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM01482r" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM01483r" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM01484r" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM01485r" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM01486r" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM01487r" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM01488r" stoichiometry="0.0518" constant="true"/>
+          <speciesReference species="M_MAM01489r" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM01490r" stoichiometry="0.005" constant="true"/>
+          <speciesReference species="M_MAM01491r" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM01492r" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM01493r" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM01494r" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM01495r" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM01496r" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM01497r" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM01498r" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM01499r" stoichiometry="0.5254" constant="true"/>
+          <speciesReference species="M_MAM01500r" stoichiometry="0.0061" constant="true"/>
+          <speciesReference species="M_MAM01501r" stoichiometry="0.0081" constant="true"/>
+          <speciesReference species="M_MAM01502r" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM01503r" stoichiometry="0.1958" constant="true"/>
+          <speciesReference species="M_MAM01504r" stoichiometry="0.138" constant="true"/>
+          <speciesReference species="M_MAM01505r" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM01506r" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM01507r" stoichiometry="0.0132" constant="true"/>
+          <speciesReference species="M_MAM01508r" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM01509r" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM01510r" stoichiometry="0.0001" constant="true"/>
+        </listOfProducts>
+      </reaction>
+      <reaction metaid="R_MAR03625" sboTerm="SBO:0000176" id="R_MAR03625" name="Acyl-CoA:cholesterol O-acyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+        <notes>
+          <body xmlns="http://www.w3.org/1999/xhtml">
+            <p>Confidence Level: 0</p>
+          </body>
+        </notes>
+        <annotation>
+          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+            <rdf:Description rdf:about="#R_MAR03625">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.26"/>
@@ -226864,18 +226901,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01450r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02345r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02345r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01498r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01498r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG8112"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03626" sboTerm="SBO:0000176" id="MAR03626" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03626" sboTerm="SBO:0000176" id="R_MAR03626" name="Acyl-CoA:cholesterol O-acyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -226883,7 +226920,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03626">
+            <rdf:Description rdf:about="#R_MAR03626">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.26"/>
@@ -226896,18 +226933,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01450r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03050r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03050r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01510r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01510r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG8112"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03627" sboTerm="SBO:0000176" id="MAR03627" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03627" sboTerm="SBO:0000176" id="R_MAR03627" name="Acyl-CoA:cholesterol O-acyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -226915,7 +226952,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03627">
+            <rdf:Description rdf:about="#R_MAR03627">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.26"/>
@@ -226928,18 +226965,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01450r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02495r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02495r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01501r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01501r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG8112"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03628" sboTerm="SBO:0000176" id="MAR03628" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03628" sboTerm="SBO:0000176" id="R_MAR03628" name="Acyl-CoA:cholesterol O-acyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -226947,7 +226984,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03628">
+            <rdf:Description rdf:about="#R_MAR03628">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.26"/>
@@ -226960,18 +226997,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00129r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01450r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00129r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01487r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01487r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG8112"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03629" sboTerm="SBO:0000176" id="MAR03629" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03629" sboTerm="SBO:0000176" id="R_MAR03629" name="Acyl-CoA:cholesterol O-acyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -226979,7 +227016,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03629">
+            <rdf:Description rdf:about="#R_MAR03629">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.26"/>
@@ -226992,18 +227029,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00118r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01450r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00118r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01479r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01479r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG8112"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03630" sboTerm="SBO:0000176" id="MAR03630" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03630" sboTerm="SBO:0000176" id="R_MAR03630" name="Acyl-CoA:cholesterol O-acyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -227011,7 +227048,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03630">
+            <rdf:Description rdf:about="#R_MAR03630">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.26"/>
@@ -227024,18 +227061,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01141r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01450r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01141r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01470r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01470r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG8112"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03631" sboTerm="SBO:0000176" id="MAR03631" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03631" sboTerm="SBO:0000176" id="R_MAR03631" name="Acyl-CoA:cholesterol O-acyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -227043,7 +227080,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03631">
+            <rdf:Description rdf:about="#R_MAR03631">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.26"/>
@@ -227056,18 +227093,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01450r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02689r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02689r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01506r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01506r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG8112"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03632" sboTerm="SBO:0000176" id="MAR03632" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03632" sboTerm="SBO:0000176" id="R_MAR03632" name="Acyl-CoA:cholesterol O-acyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -227076,7 +227113,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03632">
+            <rdf:Description rdf:about="#R_MAR03632">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.26"/>
@@ -227090,18 +227127,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01450r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02678r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02678r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01504r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01504r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG8112"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03633" sboTerm="SBO:0000176" id="MAR03633" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03633" sboTerm="SBO:0000176" id="R_MAR03633" name="Acyl-CoA:cholesterol O-acyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -227109,7 +227146,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03633">
+            <rdf:Description rdf:about="#R_MAR03633">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.26"/>
@@ -227122,18 +227159,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01191r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01450r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01191r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01477r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01477r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG8112"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03634" sboTerm="SBO:0000176" id="MAR03634" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03634" sboTerm="SBO:0000176" id="R_MAR03634" name="Acyl-CoA:cholesterol O-acyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -227142,7 +227179,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03634">
+            <rdf:Description rdf:about="#R_MAR03634">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.26"/>
@@ -227155,18 +227192,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01450r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02677r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02677r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01505r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01505r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG8112"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03635" sboTerm="SBO:0000176" id="MAR03635" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03635" sboTerm="SBO:0000176" id="R_MAR03635" name="Acyl-CoA:cholesterol O-acyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -227174,7 +227211,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03635">
+            <rdf:Description rdf:about="#R_MAR03635">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.26"/>
@@ -227187,18 +227224,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01450r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02101r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02101r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01495r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01495r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG8112"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03636" sboTerm="SBO:0000176" id="MAR03636" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03636" sboTerm="SBO:0000176" id="R_MAR03636" name="Acyl-CoA:cholesterol O-acyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -227206,7 +227243,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03636">
+            <rdf:Description rdf:about="#R_MAR03636">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.26"/>
@@ -227219,18 +227256,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00004r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01450r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00004r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01454r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01454r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG8112"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03637" sboTerm="SBO:0000176" id="MAR03637" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03637" sboTerm="SBO:0000176" id="R_MAR03637" name="Acyl-CoA:cholesterol O-acyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -227238,7 +227275,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03637">
+            <rdf:Description rdf:about="#R_MAR03637">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.26"/>
@@ -227251,18 +227288,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01237r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01450r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01237r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01485r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01485r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG8112"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03638" sboTerm="SBO:0000176" id="MAR03638" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03638" sboTerm="SBO:0000176" id="R_MAR03638" name="Acyl-CoA:cholesterol O-acyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -227271,7 +227308,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03638">
+            <rdf:Description rdf:about="#R_MAR03638">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.26"/>
@@ -227284,18 +227321,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01450r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02941r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02941r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01507r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01507r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG8112"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03639" sboTerm="SBO:0000176" id="MAR03639" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03639" sboTerm="SBO:0000176" id="R_MAR03639" name="Acyl-CoA:cholesterol O-acyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -227303,7 +227340,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03639">
+            <rdf:Description rdf:about="#R_MAR03639">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.26"/>
@@ -227316,18 +227353,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00020r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01450r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00020r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01464r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01464r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG8112"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03640" sboTerm="SBO:0000176" id="MAR03640" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03640" sboTerm="SBO:0000176" id="R_MAR03640" name="Acyl-CoA:cholesterol O-acyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -227335,7 +227372,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03640">
+            <rdf:Description rdf:about="#R_MAR03640">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.26"/>
@@ -227348,18 +227385,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01450r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01586r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01586r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01489r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01489r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG8112"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03641" sboTerm="SBO:0000176" id="MAR03641" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03641" sboTerm="SBO:0000176" id="R_MAR03641" name="Acyl-CoA:cholesterol O-acyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -227368,7 +227405,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03641">
+            <rdf:Description rdf:about="#R_MAR03641">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.26"/>
@@ -227382,18 +227419,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01450r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02647r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02647r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01503r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01503r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG8112"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03642" sboTerm="SBO:0000176" id="MAR03642" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03642" sboTerm="SBO:0000176" id="R_MAR03642" name="Acyl-CoA:cholesterol O-acyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -227401,7 +227438,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03642">
+            <rdf:Description rdf:about="#R_MAR03642">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.26"/>
@@ -227414,18 +227451,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00127r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01450r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00127r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01486r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01486r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG8112"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03643" sboTerm="SBO:0000176" id="MAR03643" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03643" sboTerm="SBO:0000176" id="R_MAR03643" name="Acyl-CoA:cholesterol O-acyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -227433,7 +227470,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03643">
+            <rdf:Description rdf:about="#R_MAR03643">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.26"/>
@@ -227446,18 +227483,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00116r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01450r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00116r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01478r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01478r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG8112"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03644" sboTerm="SBO:0000176" id="MAR03644" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03644" sboTerm="SBO:0000176" id="R_MAR03644" name="Acyl-CoA:cholesterol O-acyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -227465,7 +227502,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03644">
+            <rdf:Description rdf:about="#R_MAR03644">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.26"/>
@@ -227478,18 +227515,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00106r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01450r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00106r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01474r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01474r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG8112"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03645" sboTerm="SBO:0000176" id="MAR03645" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03645" sboTerm="SBO:0000176" id="R_MAR03645" name="Acyl-CoA:cholesterol O-acyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -227497,7 +227534,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03645">
+            <rdf:Description rdf:about="#R_MAR03645">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.26"/>
@@ -227510,18 +227547,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01450r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02612r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02612r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01502r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01502r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG8112"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03646" sboTerm="SBO:0000176" id="MAR03646" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03646" sboTerm="SBO:0000176" id="R_MAR03646" name="Acyl-CoA:cholesterol O-acyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -227529,7 +227566,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03646">
+            <rdf:Description rdf:about="#R_MAR03646">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.26"/>
@@ -227542,18 +227579,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01450r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01773r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01773r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01492r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01492r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG8112"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03647" sboTerm="SBO:0000176" id="MAR03647" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03647" sboTerm="SBO:0000176" id="R_MAR03647" name="Acyl-CoA:cholesterol O-acyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -227561,7 +227598,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03647">
+            <rdf:Description rdf:about="#R_MAR03647">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.26"/>
@@ -227574,18 +227611,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00018r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01450r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00018r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01463r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01463r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG8112"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03648" sboTerm="SBO:0000176" id="MAR03648" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03648" sboTerm="SBO:0000176" id="R_MAR03648" name="Acyl-CoA:cholesterol O-acyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -227593,7 +227630,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03648">
+            <rdf:Description rdf:about="#R_MAR03648">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.26"/>
@@ -227606,18 +227643,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00007r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01450r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00007r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01458r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01458r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG8112"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03649" sboTerm="SBO:0000176" id="MAR03649" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03649" sboTerm="SBO:0000176" id="R_MAR03649" name="Acyl-CoA:cholesterol O-acyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -227625,7 +227662,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03649">
+            <rdf:Description rdf:about="#R_MAR03649">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.26"/>
@@ -227638,18 +227675,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01236r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01450r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01236r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01484r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01484r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG8112"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03650" sboTerm="SBO:0000176" id="MAR03650" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03650" sboTerm="SBO:0000176" id="R_MAR03650" name="Acyl-CoA:cholesterol O-acyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -227657,7 +227694,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03650">
+            <rdf:Description rdf:about="#R_MAR03650">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.26"/>
@@ -227670,18 +227707,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00123r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01450r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00123r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01481r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01481r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG8112"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03651" sboTerm="SBO:0000176" id="MAR03651" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03651" sboTerm="SBO:0000176" id="R_MAR03651" name="Acyl-CoA:cholesterol O-acyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -227689,7 +227726,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03651">
+            <rdf:Description rdf:about="#R_MAR03651">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.26"/>
@@ -227702,18 +227739,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00101r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01450r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00101r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01469r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01469r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG8112"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03652" sboTerm="SBO:0000176" id="MAR03652" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03652" sboTerm="SBO:0000176" id="R_MAR03652" name="Acyl-CoA:cholesterol O-acyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -227721,7 +227758,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03652">
+            <rdf:Description rdf:about="#R_MAR03652">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.26"/>
@@ -227734,18 +227771,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01450r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02052r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02052r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01494r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01494r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG8112"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03653" sboTerm="SBO:0000176" id="MAR03653" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03653" sboTerm="SBO:0000176" id="R_MAR03653" name="Acyl-CoA:cholesterol O-acyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -227753,7 +227790,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03653">
+            <rdf:Description rdf:about="#R_MAR03653">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.26"/>
@@ -227766,18 +227803,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01450r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01725r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01725r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01491r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01491r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG8112"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03654" sboTerm="SBO:0000176" id="MAR03654" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03654" sboTerm="SBO:0000176" id="R_MAR03654" name="Acyl-CoA:cholesterol O-acyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -227785,7 +227822,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03654">
+            <rdf:Description rdf:about="#R_MAR03654">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.26"/>
@@ -227798,18 +227835,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00016r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01450r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00016r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01462r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01462r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG8112"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03655" sboTerm="SBO:0000176" id="MAR03655" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03655" sboTerm="SBO:0000176" id="R_MAR03655" name="Acyl-CoA:cholesterol O-acyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -227817,7 +227854,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03655">
+            <rdf:Description rdf:about="#R_MAR03655">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.26"/>
@@ -227830,18 +227867,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00006r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01450r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00006r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01457r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01457r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG8112"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03656" sboTerm="SBO:0000176" id="MAR03656" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03656" sboTerm="SBO:0000176" id="R_MAR03656" name="Acyl-CoA:cholesterol O-acyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -227849,7 +227886,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03656">
+            <rdf:Description rdf:about="#R_MAR03656">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.26"/>
@@ -227862,18 +227899,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01450r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03047r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03047r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01509r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01509r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG8112"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03657" sboTerm="SBO:0000176" id="MAR03657" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03657" sboTerm="SBO:0000176" id="R_MAR03657" name="Acyl-CoA:cholesterol O-acyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -227881,7 +227918,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03657">
+            <rdf:Description rdf:about="#R_MAR03657">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.26"/>
@@ -227894,18 +227931,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01450r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02971r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02971r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01508r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01508r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG8112"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03658" sboTerm="SBO:0000176" id="MAR03658" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03658" sboTerm="SBO:0000176" id="R_MAR03658" name="Acyl-CoA:cholesterol O-acyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -227913,7 +227950,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03658">
+            <rdf:Description rdf:about="#R_MAR03658">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.26"/>
@@ -227926,18 +227963,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00025r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01450r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00025r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01465r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01465r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG8112"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03659" sboTerm="SBO:0000176" id="MAR03659" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03659" sboTerm="SBO:0000176" id="R_MAR03659" name="Acyl-CoA:cholesterol O-acyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -227945,7 +227982,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03659">
+            <rdf:Description rdf:about="#R_MAR03659">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.26"/>
@@ -227958,18 +227995,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01450r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02110r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02110r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01496r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01496r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG8112"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03660" sboTerm="SBO:0000176" id="MAR03660" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03660" sboTerm="SBO:0000176" id="R_MAR03660" name="Acyl-CoA:cholesterol O-acyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -227977,7 +228014,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03660">
+            <rdf:Description rdf:about="#R_MAR03660">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.26"/>
@@ -227990,18 +228027,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01450r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02112r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02112r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01497r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01497r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG8112"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03661" sboTerm="SBO:0000176" id="MAR03661" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03661" sboTerm="SBO:0000176" id="R_MAR03661" name="Acyl-CoA:cholesterol O-acyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -228010,7 +228047,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03661">
+            <rdf:Description rdf:about="#R_MAR03661">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.26"/>
@@ -228023,18 +228060,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01450r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02390r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02390r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01500r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01500r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG8112"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03662" sboTerm="SBO:0000176" id="MAR03662" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03662" sboTerm="SBO:0000176" id="R_MAR03662" name="Acyl-CoA:cholesterol O-acyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -228042,7 +228079,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03662">
+            <rdf:Description rdf:about="#R_MAR03662">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.26"/>
@@ -228055,18 +228092,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00108r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01450r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00108r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01473r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01473r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG8112"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03663" sboTerm="SBO:0000176" id="MAR03663" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03663" sboTerm="SBO:0000176" id="R_MAR03663" name="Acyl-CoA:cholesterol O-acyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -228074,7 +228111,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03663">
+            <rdf:Description rdf:about="#R_MAR03663">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.26"/>
@@ -228087,18 +228124,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00125r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01450r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00125r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01480r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01480r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG8112"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03664" sboTerm="SBO:0000176" id="MAR03664" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03664" sboTerm="SBO:0000176" id="R_MAR03664" name="Acyl-CoA:cholesterol O-acyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -228106,7 +228143,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03664">
+            <rdf:Description rdf:about="#R_MAR03664">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.26"/>
@@ -228119,18 +228156,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00103r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01450r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00103r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01468r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01468r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG8112"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03665" sboTerm="SBO:0000176" id="MAR03665" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03665" sboTerm="SBO:0000176" id="R_MAR03665" name="Acyl-CoA:cholesterol O-acyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -228138,7 +228175,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03665">
+            <rdf:Description rdf:about="#R_MAR03665">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.26"/>
@@ -228151,18 +228188,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00121r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01450r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00121r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01475r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01475r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG8112"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03666" sboTerm="SBO:0000176" id="MAR03666" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03666" sboTerm="SBO:0000176" id="R_MAR03666" name="Acyl-CoA:cholesterol O-acyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -228170,7 +228207,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03666">
+            <rdf:Description rdf:about="#R_MAR03666">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.26"/>
@@ -228183,18 +228220,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00134r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01450r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00134r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01482r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01482r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG8112"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03667" sboTerm="SBO:0000176" id="MAR03667" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03667" sboTerm="SBO:0000176" id="R_MAR03667" name="Acyl-CoA:cholesterol O-acyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -228202,7 +228239,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03667">
+            <rdf:Description rdf:about="#R_MAR03667">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.26"/>
@@ -228215,18 +228252,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00113r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01450r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00113r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01471r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01471r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG8112"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03668" sboTerm="SBO:0000176" id="MAR03668" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03668" sboTerm="SBO:0000176" id="R_MAR03668" name="Acyl-CoA:cholesterol O-acyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -228234,7 +228271,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03668">
+            <rdf:Description rdf:about="#R_MAR03668">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.26"/>
@@ -228247,18 +228284,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00095r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01450r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00095r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01466r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01466r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG8112"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03669" sboTerm="SBO:0000176" id="MAR03669" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03669" sboTerm="SBO:0000176" id="R_MAR03669" name="Acyl-CoA:cholesterol O-acyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -228266,7 +228303,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03669">
+            <rdf:Description rdf:about="#R_MAR03669">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.26"/>
@@ -228279,18 +228316,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00012r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01450r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00012r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01455r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01455r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG8112"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03670" sboTerm="SBO:0000176" id="MAR03670" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03670" sboTerm="SBO:0000176" id="R_MAR03670" name="Acyl-CoA:cholesterol O-acyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -228298,7 +228335,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03670">
+            <rdf:Description rdf:about="#R_MAR03670">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.26"/>
@@ -228311,18 +228348,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00343r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01450r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00343r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01460r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01460r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG8112"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03671" sboTerm="SBO:0000176" id="MAR03671" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03671" sboTerm="SBO:0000176" id="R_MAR03671" name="Acyl-CoA:cholesterol O-acyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -228330,7 +228367,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03671">
+            <rdf:Description rdf:about="#R_MAR03671">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.26"/>
@@ -228343,18 +228380,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00262r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01450r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00262r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01452r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01452r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG8112"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03672" sboTerm="SBO:0000176" id="MAR03672" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03672" sboTerm="SBO:0000176" id="R_MAR03672" name="Acyl-CoA:cholesterol O-acyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -228362,7 +228399,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03672">
+            <rdf:Description rdf:about="#R_MAR03672">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.26"/>
@@ -228375,18 +228412,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00317r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01450r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00317r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01459r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01459r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG8112"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03673" sboTerm="SBO:0000176" id="MAR03673" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03673" sboTerm="SBO:0000176" id="R_MAR03673" name="Acyl-CoA:cholesterol O-acyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -228395,7 +228432,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03673">
+            <rdf:Description rdf:about="#R_MAR03673">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.26"/>
@@ -228409,18 +228446,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01450r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02391r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02391r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01499r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01499r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG8112"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03674" sboTerm="SBO:0000176" id="MAR03674" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03674" sboTerm="SBO:0000176" id="R_MAR03674" name="Acyl-CoA:cholesterol O-acyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -228429,7 +228466,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03674">
+            <rdf:Description rdf:about="#R_MAR03674">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.26"/>
@@ -228443,18 +228480,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01450r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01934r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01934r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01493r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01493r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG8112"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03675" sboTerm="SBO:0000176" id="MAR03675" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03675" sboTerm="SBO:0000176" id="R_MAR03675" name="Acyl-CoA:cholesterol O-acyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -228462,7 +228499,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03675">
+            <rdf:Description rdf:about="#R_MAR03675">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.26"/>
@@ -228475,18 +228512,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01450r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01697r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01697r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01490r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01490r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG8112"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03676" sboTerm="SBO:0000176" id="MAR03676" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03676" sboTerm="SBO:0000176" id="R_MAR03676" name="Acyl-CoA:cholesterol O-acyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -228495,7 +228532,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03676">
+            <rdf:Description rdf:about="#R_MAR03676">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.26"/>
@@ -228509,18 +228546,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01364r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01450r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01364r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01488r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01488r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG8112"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03677" sboTerm="SBO:0000176" id="MAR03677" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03677" sboTerm="SBO:0000176" id="R_MAR03677" name="Acyl-CoA:cholesterol O-acyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -228528,7 +228565,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03677">
+            <rdf:Description rdf:about="#R_MAR03677">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.26"/>
@@ -228541,18 +228578,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00119r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01450r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00119r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01476r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01476r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG8112"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03678" sboTerm="SBO:0000176" id="MAR03678" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03678" sboTerm="SBO:0000176" id="R_MAR03678" name="Acyl-CoA:cholesterol O-acyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -228560,7 +228597,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03678">
+            <rdf:Description rdf:about="#R_MAR03678">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.26"/>
@@ -228573,18 +228610,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00131r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01450r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00131r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01483r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01483r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG8112"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03679" sboTerm="SBO:0000176" id="MAR03679" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03679" sboTerm="SBO:0000176" id="R_MAR03679" name="Acyl-CoA:cholesterol O-acyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -228592,7 +228629,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03679">
+            <rdf:Description rdf:about="#R_MAR03679">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.26"/>
@@ -228605,18 +228642,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00110r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01450r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00110r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01472r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01472r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG8112"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03680" sboTerm="SBO:0000176" id="MAR03680" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03680" sboTerm="SBO:0000176" id="R_MAR03680" name="Acyl-CoA:cholesterol O-acyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -228624,7 +228661,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03680">
+            <rdf:Description rdf:about="#R_MAR03680">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.26"/>
@@ -228637,18 +228674,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00093r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01450r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00093r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01467r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01467r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG8112"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03681" sboTerm="SBO:0000176" id="MAR03681" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03681" sboTerm="SBO:0000176" id="R_MAR03681" name="Acyl-CoA:cholesterol O-acyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -228656,7 +228693,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03681">
+            <rdf:Description rdf:about="#R_MAR03681">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.26"/>
@@ -228669,18 +228706,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00009r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01450r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00009r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01456r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01456r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG8112"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03682" sboTerm="SBO:0000176" id="MAR03682" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03682" sboTerm="SBO:0000176" id="R_MAR03682" name="Acyl-CoA:cholesterol O-acyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -228688,7 +228725,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03682">
+            <rdf:Description rdf:about="#R_MAR03682">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.26"/>
@@ -228701,18 +228738,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00023r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01450r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00023r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01461r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01461r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG8112"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03683" sboTerm="SBO:0000176" id="MAR03683" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03683" sboTerm="SBO:0000176" id="R_MAR03683" name="Acyl-CoA:cholesterol O-acyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -228720,7 +228757,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03683">
+            <rdf:Description rdf:about="#R_MAR03683">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.26"/>
@@ -228733,18 +228770,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00264r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01450r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00264r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01453r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01453r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG8112"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03684" sboTerm="SBO:0000176" id="MAR03684" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03684" sboTerm="SBO:0000176" id="R_MAR03684" name="Steryl-ester acylhydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -228752,7 +228789,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03684">
+            <rdf:Description rdf:about="#R_MAR03684">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.13"/>
@@ -228765,13 +228802,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01498r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01498r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01450r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02344r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02344r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -228783,7 +228820,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03685" sboTerm="SBO:0000176" id="MAR03685" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03685" sboTerm="SBO:0000176" id="R_MAR03685" name="Steryl-ester acylhydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -228791,7 +228828,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03685">
+            <rdf:Description rdf:about="#R_MAR03685">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.13"/>
@@ -228804,13 +228841,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01510r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01510r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01450r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03051r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03051r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -228822,7 +228859,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03686" sboTerm="SBO:0000176" id="MAR03686" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03686" sboTerm="SBO:0000176" id="R_MAR03686" name="Steryl-ester acylhydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -228830,7 +228867,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03686">
+            <rdf:Description rdf:about="#R_MAR03686">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.13"/>
@@ -228843,13 +228880,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01501r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01501r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01450r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02494r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02494r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -228861,7 +228898,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03687" sboTerm="SBO:0000176" id="MAR03687" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03687" sboTerm="SBO:0000176" id="R_MAR03687" name="Steryl-ester acylhydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -228869,7 +228906,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03687">
+            <rdf:Description rdf:about="#R_MAR03687">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.13"/>
@@ -228882,13 +228919,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01487r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01487r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00128r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01450r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00128r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -228900,7 +228937,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03688" sboTerm="SBO:0000176" id="MAR03688" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03688" sboTerm="SBO:0000176" id="R_MAR03688" name="Steryl-ester acylhydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -228908,7 +228945,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03688">
+            <rdf:Description rdf:about="#R_MAR03688">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.13"/>
@@ -228921,13 +228958,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01479r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01479r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00117r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01450r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00117r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -228939,7 +228976,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03689" sboTerm="SBO:0000176" id="MAR03689" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03689" sboTerm="SBO:0000176" id="R_MAR03689" name="Steryl-ester acylhydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -228947,7 +228984,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03689">
+            <rdf:Description rdf:about="#R_MAR03689">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.13"/>
@@ -228960,13 +228997,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01470r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01470r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01450r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02745r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02745r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -228978,7 +229015,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03690" sboTerm="SBO:0000176" id="MAR03690" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03690" sboTerm="SBO:0000176" id="R_MAR03690" name="Steryl-ester acylhydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -228986,7 +229023,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03690">
+            <rdf:Description rdf:about="#R_MAR03690">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.13"/>
@@ -228999,13 +229036,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01506r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01506r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01450r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02690r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02690r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -229017,7 +229054,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03691" sboTerm="SBO:0000176" id="MAR03691" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03691" sboTerm="SBO:0000176" id="R_MAR03691" name="Steryl-ester acylhydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -229026,7 +229063,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03691">
+            <rdf:Description rdf:about="#R_MAR03691">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.13"/>
@@ -229040,13 +229077,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01504r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01504r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01450r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02674r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02674r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -229058,7 +229095,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03692" sboTerm="SBO:0000176" id="MAR03692" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03692" sboTerm="SBO:0000176" id="R_MAR03692" name="Steryl-ester acylhydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -229066,7 +229103,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03692">
+            <rdf:Description rdf:about="#R_MAR03692">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.13"/>
@@ -229079,13 +229116,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01477r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01477r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01197r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01450r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01197r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -229097,7 +229134,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03693" sboTerm="SBO:0000176" id="MAR03693" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03693" sboTerm="SBO:0000176" id="R_MAR03693" name="Steryl-ester acylhydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -229106,7 +229143,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03693">
+            <rdf:Description rdf:about="#R_MAR03693">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.13"/>
@@ -229120,13 +229157,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01505r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01505r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01450r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02675r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02675r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -229138,7 +229175,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03694" sboTerm="SBO:0000176" id="MAR03694" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03694" sboTerm="SBO:0000176" id="R_MAR03694" name="Steryl-ester acylhydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -229146,7 +229183,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03694">
+            <rdf:Description rdf:about="#R_MAR03694">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.13"/>
@@ -229159,13 +229196,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01495r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01495r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01450r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02456r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02456r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -229177,7 +229214,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03695" sboTerm="SBO:0000176" id="MAR03695" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03695" sboTerm="SBO:0000176" id="R_MAR03695" name="Steryl-ester acylhydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -229185,7 +229222,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03695">
+            <rdf:Description rdf:about="#R_MAR03695">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.13"/>
@@ -229198,13 +229235,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01454r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01454r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00003r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01450r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00003r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -229216,7 +229253,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03696" sboTerm="SBO:0000176" id="MAR03696" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03696" sboTerm="SBO:0000176" id="R_MAR03696" name="Steryl-ester acylhydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -229224,7 +229261,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03696">
+            <rdf:Description rdf:about="#R_MAR03696">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.13"/>
@@ -229237,13 +229274,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01485r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01485r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01238r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01450r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01238r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -229255,7 +229292,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03697" sboTerm="SBO:0000176" id="MAR03697" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03697" sboTerm="SBO:0000176" id="R_MAR03697" name="Steryl-ester acylhydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -229264,7 +229301,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03697">
+            <rdf:Description rdf:about="#R_MAR03697">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.13"/>
@@ -229277,13 +229314,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01507r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01507r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01450r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02938r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02938r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -229295,7 +229332,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03698" sboTerm="SBO:0000176" id="MAR03698" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03698" sboTerm="SBO:0000176" id="R_MAR03698" name="Steryl-ester acylhydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -229303,7 +229340,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03698">
+            <rdf:Description rdf:about="#R_MAR03698">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.13"/>
@@ -229316,13 +229353,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01464r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01464r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00019r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01450r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00019r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -229334,7 +229371,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03699" sboTerm="SBO:0000176" id="MAR03699" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03699" sboTerm="SBO:0000176" id="R_MAR03699" name="Steryl-ester acylhydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -229342,7 +229379,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03699">
+            <rdf:Description rdf:about="#R_MAR03699">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.13"/>
@@ -229355,13 +229392,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01489r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01489r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01450r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01585r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01585r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -229373,7 +229410,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03700" sboTerm="SBO:0000176" id="MAR03700" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03700" sboTerm="SBO:0000176" id="R_MAR03700" name="Steryl-ester acylhydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -229382,7 +229419,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03700">
+            <rdf:Description rdf:about="#R_MAR03700">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.13"/>
@@ -229396,13 +229433,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01503r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01503r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01450r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02646r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02646r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -229414,7 +229451,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03701" sboTerm="SBO:0000176" id="MAR03701" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03701" sboTerm="SBO:0000176" id="R_MAR03701" name="Steryl-ester acylhydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -229422,7 +229459,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03701">
+            <rdf:Description rdf:about="#R_MAR03701">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.13"/>
@@ -229435,13 +229472,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01486r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01486r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01450r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01778r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01778r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -229453,7 +229490,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03702" sboTerm="SBO:0000176" id="MAR03702" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03702" sboTerm="SBO:0000176" id="R_MAR03702" name="Steryl-ester acylhydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -229461,7 +229498,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03702">
+            <rdf:Description rdf:about="#R_MAR03702">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.13"/>
@@ -229474,13 +229511,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01478r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01478r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00115r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01450r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00115r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -229492,7 +229529,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03703" sboTerm="SBO:0000176" id="MAR03703" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03703" sboTerm="SBO:0000176" id="R_MAR03703" name="Steryl-ester acylhydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -229500,7 +229537,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03703">
+            <rdf:Description rdf:about="#R_MAR03703">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.13"/>
@@ -229513,13 +229550,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01474r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01474r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00104r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01450r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00104r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -229531,7 +229568,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03704" sboTerm="SBO:0000176" id="MAR03704" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03704" sboTerm="SBO:0000176" id="R_MAR03704" name="Steryl-ester acylhydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -229539,7 +229576,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03704">
+            <rdf:Description rdf:about="#R_MAR03704">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.13"/>
@@ -229552,13 +229589,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01502r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01502r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01450r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02613r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02613r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -229570,7 +229607,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03705" sboTerm="SBO:0000176" id="MAR03705" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03705" sboTerm="SBO:0000176" id="R_MAR03705" name="Steryl-ester acylhydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -229578,7 +229615,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03705">
+            <rdf:Description rdf:about="#R_MAR03705">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.13"/>
@@ -229591,13 +229628,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01492r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01492r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01450r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01771r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01771r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -229609,7 +229646,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03706" sboTerm="SBO:0000176" id="MAR03706" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03706" sboTerm="SBO:0000176" id="R_MAR03706" name="Steryl-ester acylhydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -229617,7 +229654,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03706">
+            <rdf:Description rdf:about="#R_MAR03706">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.13"/>
@@ -229630,13 +229667,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01463r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01463r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00017r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01450r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00017r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -229648,7 +229685,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03707" sboTerm="SBO:0000176" id="MAR03707" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03707" sboTerm="SBO:0000176" id="R_MAR03707" name="Steryl-ester acylhydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -229656,7 +229693,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03707">
+            <rdf:Description rdf:about="#R_MAR03707">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.13"/>
@@ -229669,13 +229706,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01458r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01458r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01450r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01584r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01584r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -229687,7 +229724,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03708" sboTerm="SBO:0000176" id="MAR03708" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03708" sboTerm="SBO:0000176" id="R_MAR03708" name="Steryl-ester acylhydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -229695,7 +229732,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03708">
+            <rdf:Description rdf:about="#R_MAR03708">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.13"/>
@@ -229708,13 +229745,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01484r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01484r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01235r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01450r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01235r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -229726,7 +229763,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03709" sboTerm="SBO:0000176" id="MAR03709" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03709" sboTerm="SBO:0000176" id="R_MAR03709" name="Steryl-ester acylhydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -229734,7 +229771,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03709">
+            <rdf:Description rdf:about="#R_MAR03709">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.13"/>
@@ -229747,13 +229784,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01481r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01481r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01207r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01450r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01207r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -229765,7 +229802,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03710" sboTerm="SBO:0000176" id="MAR03710" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03710" sboTerm="SBO:0000176" id="R_MAR03710" name="Steryl-ester acylhydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -229773,7 +229810,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03710">
+            <rdf:Description rdf:about="#R_MAR03710">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.13"/>
@@ -229786,13 +229823,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01469r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01469r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01450r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02457r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02457r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -229804,7 +229841,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03711" sboTerm="SBO:0000176" id="MAR03711" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03711" sboTerm="SBO:0000176" id="R_MAR03711" name="Steryl-ester acylhydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -229812,7 +229849,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03711">
+            <rdf:Description rdf:about="#R_MAR03711">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.13"/>
@@ -229825,13 +229862,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01494r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01494r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01450r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02053r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02053r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -229843,7 +229880,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03712" sboTerm="SBO:0000176" id="MAR03712" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03712" sboTerm="SBO:0000176" id="R_MAR03712" name="Steryl-ester acylhydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -229851,7 +229888,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03712">
+            <rdf:Description rdf:about="#R_MAR03712">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.13"/>
@@ -229864,13 +229901,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01491r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01491r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01373r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01450r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01373r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -229882,7 +229919,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03713" sboTerm="SBO:0000176" id="MAR03713" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03713" sboTerm="SBO:0000176" id="R_MAR03713" name="Steryl-ester acylhydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -229890,7 +229927,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03713">
+            <rdf:Description rdf:about="#R_MAR03713">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.13"/>
@@ -229903,13 +229940,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01462r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01462r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01450r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01583r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01583r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -229921,7 +229958,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03714" sboTerm="SBO:0000176" id="MAR03714" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03714" sboTerm="SBO:0000176" id="R_MAR03714" name="Steryl-ester acylhydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -229929,7 +229966,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03714">
+            <rdf:Description rdf:about="#R_MAR03714">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.13"/>
@@ -229942,13 +229979,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01457r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01457r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01450r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01582r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01582r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -229960,7 +229997,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03715" sboTerm="SBO:0000176" id="MAR03715" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03715" sboTerm="SBO:0000176" id="R_MAR03715" name="Steryl-ester acylhydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -229968,7 +230005,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03715">
+            <rdf:Description rdf:about="#R_MAR03715">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.13"/>
@@ -229981,13 +230018,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01509r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01509r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01450r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03045r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03045r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -229999,7 +230036,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03716" sboTerm="SBO:0000176" id="MAR03716" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03716" sboTerm="SBO:0000176" id="R_MAR03716" name="Steryl-ester acylhydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -230007,7 +230044,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03716">
+            <rdf:Description rdf:about="#R_MAR03716">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.13"/>
@@ -230020,13 +230057,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01508r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01508r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01450r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02385r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02385r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -230038,7 +230075,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03717" sboTerm="SBO:0000176" id="MAR03717" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03717" sboTerm="SBO:0000176" id="R_MAR03717" name="Steryl-ester acylhydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -230046,7 +230083,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03717">
+            <rdf:Description rdf:about="#R_MAR03717">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.13"/>
@@ -230059,13 +230096,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01465r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01465r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01450r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02564r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02564r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -230077,7 +230114,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03718" sboTerm="SBO:0000176" id="MAR03718" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03718" sboTerm="SBO:0000176" id="R_MAR03718" name="Steryl-ester acylhydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -230085,7 +230122,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03718">
+            <rdf:Description rdf:about="#R_MAR03718">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.13"/>
@@ -230098,13 +230135,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01496r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01496r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01432r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01450r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01432r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -230116,7 +230153,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03719" sboTerm="SBO:0000176" id="MAR03719" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03719" sboTerm="SBO:0000176" id="R_MAR03719" name="Steryl-ester acylhydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -230124,7 +230161,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03719">
+            <rdf:Description rdf:about="#R_MAR03719">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.13"/>
@@ -230137,13 +230174,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01497r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01497r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01450r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03153r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03153r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -230155,7 +230192,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03720" sboTerm="SBO:0000176" id="MAR03720" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03720" sboTerm="SBO:0000176" id="R_MAR03720" name="Steryl-ester acylhydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -230164,7 +230201,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03720">
+            <rdf:Description rdf:about="#R_MAR03720">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.13"/>
@@ -230178,13 +230215,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01500r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01500r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01450r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02389r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02389r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -230196,7 +230233,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03721" sboTerm="SBO:0000176" id="MAR03721" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03721" sboTerm="SBO:0000176" id="R_MAR03721" name="Steryl-ester acylhydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -230204,7 +230241,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03721">
+            <rdf:Description rdf:about="#R_MAR03721">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.13"/>
@@ -230217,13 +230254,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01473r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01473r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01450r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02939r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02939r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -230235,7 +230272,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03722" sboTerm="SBO:0000176" id="MAR03722" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03722" sboTerm="SBO:0000176" id="R_MAR03722" name="Steryl-ester acylhydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -230243,7 +230280,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03722">
+            <rdf:Description rdf:about="#R_MAR03722">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.13"/>
@@ -230256,13 +230293,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01480r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01480r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01450r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02648r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02648r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -230274,7 +230311,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03723" sboTerm="SBO:0000176" id="MAR03723" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03723" sboTerm="SBO:0000176" id="R_MAR03723" name="Steryl-ester acylhydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -230282,7 +230319,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03723">
+            <rdf:Description rdf:about="#R_MAR03723">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.13"/>
@@ -230295,13 +230332,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01468r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01468r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01450r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01784r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01784r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -230313,7 +230350,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03724" sboTerm="SBO:0000176" id="MAR03724" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03724" sboTerm="SBO:0000176" id="R_MAR03724" name="Steryl-ester acylhydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -230321,7 +230358,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03724">
+            <rdf:Description rdf:about="#R_MAR03724">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.13"/>
@@ -230334,13 +230371,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01475r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01475r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01450r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01741r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01741r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -230352,7 +230389,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03725" sboTerm="SBO:0000176" id="MAR03725" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03725" sboTerm="SBO:0000176" id="R_MAR03725" name="Steryl-ester acylhydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -230360,7 +230397,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03725">
+            <rdf:Description rdf:about="#R_MAR03725">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.13"/>
@@ -230373,13 +230410,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01482r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01482r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00135r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01450r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00135r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -230391,7 +230428,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03726" sboTerm="SBO:0000176" id="MAR03726" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03726" sboTerm="SBO:0000176" id="R_MAR03726" name="Steryl-ester acylhydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -230399,7 +230436,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03726">
+            <rdf:Description rdf:about="#R_MAR03726">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.13"/>
@@ -230412,13 +230449,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01471r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01471r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00114r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01450r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00114r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -230430,7 +230467,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03727" sboTerm="SBO:0000176" id="MAR03727" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03727" sboTerm="SBO:0000176" id="R_MAR03727" name="Steryl-ester acylhydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -230438,7 +230475,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03727">
+            <rdf:Description rdf:about="#R_MAR03727">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.13"/>
@@ -230451,13 +230488,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01466r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01466r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01450r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01689r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01689r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -230469,7 +230506,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03728" sboTerm="SBO:0000176" id="MAR03728" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03728" sboTerm="SBO:0000176" id="R_MAR03728" name="Steryl-ester acylhydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -230477,7 +230514,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03728">
+            <rdf:Description rdf:about="#R_MAR03728">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.13"/>
@@ -230490,13 +230527,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01455r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01455r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00010r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01450r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00010r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -230508,7 +230545,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03729" sboTerm="SBO:0000176" id="MAR03729" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03729" sboTerm="SBO:0000176" id="R_MAR03729" name="Steryl-ester acylhydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -230516,7 +230553,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03729">
+            <rdf:Description rdf:about="#R_MAR03729">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.13"/>
@@ -230529,13 +230566,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01460r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01460r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00341r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01450r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00341r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -230547,7 +230584,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03730" sboTerm="SBO:0000176" id="MAR03730" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03730" sboTerm="SBO:0000176" id="R_MAR03730" name="Steryl-ester acylhydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -230555,7 +230592,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03730">
+            <rdf:Description rdf:about="#R_MAR03730">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.13"/>
@@ -230568,13 +230605,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01452r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01452r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00260r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01450r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00260r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -230586,7 +230623,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03731" sboTerm="SBO:0000176" id="MAR03731" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03731" sboTerm="SBO:0000176" id="R_MAR03731" name="Steryl-ester acylhydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -230594,7 +230631,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03731">
+            <rdf:Description rdf:about="#R_MAR03731">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.13"/>
@@ -230607,13 +230644,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01459r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01459r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00315r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01450r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00315r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -230625,7 +230662,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03732" sboTerm="SBO:0000176" id="MAR03732" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03732" sboTerm="SBO:0000176" id="R_MAR03732" name="Steryl-ester acylhydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -230634,7 +230671,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03732">
+            <rdf:Description rdf:about="#R_MAR03732">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.13"/>
@@ -230648,13 +230685,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01499r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01499r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01450r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02387r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02387r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -230666,7 +230703,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03733" sboTerm="SBO:0000176" id="MAR03733" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03733" sboTerm="SBO:0000176" id="R_MAR03733" name="Steryl-ester acylhydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -230675,7 +230712,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03733">
+            <rdf:Description rdf:about="#R_MAR03733">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.13"/>
@@ -230689,13 +230726,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01493r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01493r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01450r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01932r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01932r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -230707,7 +230744,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03734" sboTerm="SBO:0000176" id="MAR03734" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03734" sboTerm="SBO:0000176" id="R_MAR03734" name="Steryl-ester acylhydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -230715,7 +230752,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03734">
+            <rdf:Description rdf:about="#R_MAR03734">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.13"/>
@@ -230728,13 +230765,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01490r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01490r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01450r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01696r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01696r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -230746,7 +230783,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03735" sboTerm="SBO:0000176" id="MAR03735" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03735" sboTerm="SBO:0000176" id="R_MAR03735" name="Steryl-ester acylhydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -230755,7 +230792,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03735">
+            <rdf:Description rdf:about="#R_MAR03735">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.13"/>
@@ -230769,13 +230806,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01488r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01488r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01362r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01450r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01362r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -230787,7 +230824,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03736" sboTerm="SBO:0000176" id="MAR03736" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03736" sboTerm="SBO:0000176" id="R_MAR03736" name="Steryl-ester acylhydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -230795,7 +230832,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03736">
+            <rdf:Description rdf:about="#R_MAR03736">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.13"/>
@@ -230808,13 +230845,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01476r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01476r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01291r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01450r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01291r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -230826,7 +230863,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03737" sboTerm="SBO:0000176" id="MAR03737" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03737" sboTerm="SBO:0000176" id="R_MAR03737" name="Steryl-ester acylhydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -230834,7 +230871,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03737">
+            <rdf:Description rdf:about="#R_MAR03737">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.13"/>
@@ -230847,13 +230884,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01483r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01483r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00132r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01450r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00132r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -230865,7 +230902,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03738" sboTerm="SBO:0000176" id="MAR03738" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03738" sboTerm="SBO:0000176" id="R_MAR03738" name="Steryl-ester acylhydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -230873,7 +230910,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03738">
+            <rdf:Description rdf:about="#R_MAR03738">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.13"/>
@@ -230886,13 +230923,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01472r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01472r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00111r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01450r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00111r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -230904,7 +230941,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03739" sboTerm="SBO:0000176" id="MAR03739" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03739" sboTerm="SBO:0000176" id="R_MAR03739" name="Steryl-ester acylhydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -230912,7 +230949,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03739">
+            <rdf:Description rdf:about="#R_MAR03739">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.13"/>
@@ -230925,13 +230962,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01467r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01467r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00094r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01450r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00094r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -230943,7 +230980,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03740" sboTerm="SBO:0000176" id="MAR03740" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03740" sboTerm="SBO:0000176" id="R_MAR03740" name="Steryl-ester acylhydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -230951,7 +230988,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03740">
+            <rdf:Description rdf:about="#R_MAR03740">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.13"/>
@@ -230964,13 +231001,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01456r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01456r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00008r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01450r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00008r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -230982,7 +231019,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03741" sboTerm="SBO:0000176" id="MAR03741" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03741" sboTerm="SBO:0000176" id="R_MAR03741" name="Steryl-ester acylhydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -230990,7 +231027,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03741">
+            <rdf:Description rdf:about="#R_MAR03741">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.13"/>
@@ -231003,13 +231040,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01461r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01461r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00021r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01450r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00021r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -231021,7 +231058,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03742" sboTerm="SBO:0000176" id="MAR03742" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03742" sboTerm="SBO:0000176" id="R_MAR03742" name="Steryl-ester acylhydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -231029,7 +231066,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03742">
+            <rdf:Description rdf:about="#R_MAR03742">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.13"/>
@@ -231042,13 +231079,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01453r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01453r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00265r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01450r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00265r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -231060,7 +231097,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00715" sboTerm="SBO:0000176" id="MAR00715" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00715" sboTerm="SBO:0000176" id="R_MAR00715" name="dihydroceramide,ferrocytochrome b5:oxygen oxidoreductase (C4-hydroxylating)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -231069,7 +231106,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00715">
+            <rdf:Description rdf:about="#R_MAR00715">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.-.-"/>
@@ -231083,21 +231120,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01699c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01699c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02748c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02748c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="ifc"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00716" sboTerm="SBO:0000176" id="MAR00716" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00716" sboTerm="SBO:0000176" id="R_MAR00716" name="Phytoceramide amidohydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -231106,7 +231143,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00716">
+            <rdf:Description rdf:about="#R_MAR00716">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.5.1.23"/>
@@ -231120,12 +231157,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02748c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02748c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02749c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM10005c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02749c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM10005c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -231134,7 +231171,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00733" sboTerm="SBO:0000176" id="MAR00733" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00733" sboTerm="SBO:0000176" id="R_MAR00733" name="acyl-CoA:sphingosine N-acyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -231143,7 +231180,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00733">
+            <rdf:Description rdf:about="#R_MAR00733">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.5.1.23"/>
@@ -231157,13 +231194,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01430g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01430g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02929g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM10007g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02929g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM10007g" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -231172,7 +231209,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00738" sboTerm="SBO:0000176" id="MAR00738" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00738" sboTerm="SBO:0000176" id="R_MAR00738" name="Palmitoyl-CoA:L-serine C-palmitoyltransferase (decarboxylating)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -231181,7 +231218,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00738">
+            <rdf:Description rdf:about="#R_MAR00738">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.50"/>
@@ -231195,17 +231232,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02678c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02896c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02678c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02896c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00769c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01596c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00769c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01596c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR00741" sboTerm="SBO:0000176" id="MAR00741" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00741" sboTerm="SBO:0000176" id="R_MAR00741" name="Sphinganine:NADP+ 3-oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -231214,7 +231251,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00741">
+            <rdf:Description rdf:about="#R_MAR00741">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.102"/>
@@ -231230,19 +231267,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00769c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00769c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02927c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02927c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG10425"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00744" sboTerm="SBO:0000176" id="MAR00744" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00744" sboTerm="SBO:0000176" id="R_MAR00744" name="ATP:sphinganine 1-phosphotransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -231251,7 +231288,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00744">
+            <rdf:Description rdf:about="#R_MAR00744">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.1.91"/>
@@ -231265,13 +231302,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02927c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02927c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02928c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02928c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -231281,7 +231318,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00746" sboTerm="SBO:0000176" id="MAR00746" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00746" sboTerm="SBO:0000176" id="R_MAR00746" name="3-sn-phosphatidate phosphohydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -231290,7 +231327,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00746">
+            <rdf:Description rdf:about="#R_MAR00746">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.3.4"/>
@@ -231303,12 +231340,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02928c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02928c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02927c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02927c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -231319,7 +231356,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00748" sboTerm="SBO:0000176" id="MAR00748" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00748" sboTerm="SBO:0000176" id="R_MAR00748" name="Sphinganine-1-phosphate pamlmitaldehyde-lyase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -231328,7 +231365,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00748">
+            <rdf:Description rdf:about="#R_MAR00748">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.1.2.27"/>
@@ -231342,17 +231379,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01798c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02113c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01798c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02113c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02928c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02928c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Sply"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00750" sboTerm="SBO:0000176" id="MAR00750" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00750" sboTerm="SBO:0000176" id="R_MAR00750" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -231361,7 +231398,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00750">
+            <rdf:Description rdf:about="#R_MAR00750">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.24"/>
@@ -231372,19 +231409,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02927c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM10007c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02927c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM10007c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01699c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01699c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="schlank"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00753" sboTerm="SBO:0000176" id="MAR00753" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00753" sboTerm="SBO:0000176" id="R_MAR00753" name="N-acylsphingosine amidohydrolase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -231393,7 +231430,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00753">
+            <rdf:Description rdf:about="#R_MAR00753">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.5.1.23"/>
@@ -231405,12 +231442,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01699c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01699c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02927c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM10005c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02927c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM10005c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -231419,7 +231456,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00754" sboTerm="SBO:0000176" id="MAR00754" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00754" sboTerm="SBO:0000176" id="R_MAR00754" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -231428,7 +231465,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00754">
+            <rdf:Description rdf:about="#R_MAR00754">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.-.-"/>
@@ -231440,21 +231477,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01699c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01699c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01430c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01430c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="ifc"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00758" sboTerm="SBO:0000176" id="MAR00758" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00758" sboTerm="SBO:0000176" id="R_MAR00758" name="acyl-CoA:sphingosine N-acyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -231463,7 +231500,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00758">
+            <rdf:Description rdf:about="#R_MAR00758">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.24"/>
@@ -231475,19 +231512,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01430c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01430c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02929c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM10007c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02929c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM10007c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="schlank"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00760" sboTerm="SBO:0000176" id="MAR00760" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00760" sboTerm="SBO:0000176" id="R_MAR00760" name="ATP:ceramide 1-phosphotransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -231496,7 +231533,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00760">
+            <rdf:Description rdf:about="#R_MAR00760">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.1.138"/>
@@ -231510,19 +231547,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01430c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01430c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01431c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01431c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Cerk"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00761" sboTerm="SBO:0000176" id="MAR00761" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00761" sboTerm="SBO:0000176" id="R_MAR00761" name="UDP-glucose:N-acylsphingosine D-glucosyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -231531,7 +231568,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00761">
+            <rdf:Description rdf:about="#R_MAR00761">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.80"/>
@@ -231543,19 +231580,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01430c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03108c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01430c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03108c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01972c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01972c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="GlcT"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00762" sboTerm="SBO:0000176" id="MAR00762" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00762" sboTerm="SBO:0000176" id="R_MAR00762" name="D-Glucosyl-N-acylsphingosine glucohydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -231564,7 +231601,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00762">
+            <rdf:Description rdf:about="#R_MAR00762">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.2.1.45"/>
@@ -231578,12 +231615,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01972c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01972c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01430c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01965c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01430c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01965c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -231594,7 +231631,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00763" sboTerm="SBO:0000176" id="MAR00763" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00763" sboTerm="SBO:0000176" id="R_MAR00763" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -231603,7 +231640,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00763">
+            <rdf:Description rdf:about="#R_MAR00763">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.8.3"/>
@@ -231614,16 +231651,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01425r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01430r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01425r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01430r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01590r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02908r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01590r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02908r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR00765" sboTerm="SBO:0000176" id="MAR00765" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00765" sboTerm="SBO:0000176" id="R_MAR00765" name="UDP-alpha-D-galactose:beta-D-glucosyl-(1&lt;-&gt;1)-ceramide 4-beta-D-galactosyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -231632,7 +231669,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00765">
+            <rdf:Description rdf:about="#R_MAR00765">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.-"/>
@@ -231644,16 +231681,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01972r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03107r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01972r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03107r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02328r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02328r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR00766" sboTerm="SBO:0000176" id="MAR00766" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00766" sboTerm="SBO:0000176" id="R_MAR00766" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -231662,7 +231699,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00766">
+            <rdf:Description rdf:about="#R_MAR00766">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.2.1.23"/>
@@ -231672,12 +231709,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01910e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01972e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01910e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01972e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02328e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02328e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -231686,7 +231723,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00767" sboTerm="SBO:0000176" id="MAR00767" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00767" sboTerm="SBO:0000176" id="R_MAR00767" name="3-sn-phosphatidate phosphohydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -231695,7 +231732,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00767">
+            <rdf:Description rdf:about="#R_MAR00767">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.3.4"/>
@@ -231707,12 +231744,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01431c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01431c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01430c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01430c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -231725,7 +231762,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00773" sboTerm="SBO:0000176" id="MAR00773" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00773" sboTerm="SBO:0000176" id="R_MAR00773" name="ATP:sphingosine 1-phosphotransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -231734,7 +231771,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00773">
+            <rdf:Description rdf:about="#R_MAR00773">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.1.91"/>
@@ -231749,13 +231786,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02929c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02929c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02930c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02930c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -231765,7 +231802,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00775" sboTerm="SBO:0000176" id="MAR00775" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00775" sboTerm="SBO:0000176" id="R_MAR00775" name="3-sn-phosphatidate phosphohydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -231774,7 +231811,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00775">
+            <rdf:Description rdf:about="#R_MAR00775">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.3.4"/>
@@ -231788,12 +231825,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02930c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02930c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02929c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02929c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -231804,7 +231841,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00779" sboTerm="SBO:0000176" id="MAR00779" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00779" sboTerm="SBO:0000176" id="R_MAR00779" name="sphingosine-1-phosphate palmitaldehyde-lyase (phosphoethanolamine-forming)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -231813,7 +231850,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00779">
+            <rdf:Description rdf:about="#R_MAR00779">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.1.2.27"/>
@@ -231827,17 +231864,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02930c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02930c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01798c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02116c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01798c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02116c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Sply"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00781" sboTerm="SBO:0000176" id="MAR00781" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00781" sboTerm="SBO:0000176" id="R_MAR00781" name="hexadecanal:NADP+ delta2-oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -231845,7 +231882,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00781">
+            <rdf:Description rdf:about="#R_MAR00781">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.1.27"/>
@@ -231859,16 +231896,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02116c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02116c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02113c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02113c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR00783" sboTerm="SBO:0000176" id="MAR00783" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00783" sboTerm="SBO:0000176" id="R_MAR00783" name="3-sn-phosphatidate phosphohydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -231877,7 +231914,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00783">
+            <rdf:Description rdf:about="#R_MAR00783">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.3.4"/>
@@ -231891,12 +231928,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02930e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02930e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02751e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02929e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02929e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -231906,7 +231943,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00795" sboTerm="SBO:0000176" id="MAR00795" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00795" sboTerm="SBO:0000176" id="R_MAR00795" name="Sphingomyelin cholinephosphohydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -231915,7 +231952,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00795">
+            <rdf:Description rdf:about="#R_MAR00795">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.4.12"/>
@@ -231929,13 +231966,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02908c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02908c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01430c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02738c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01430c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02738c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -231945,7 +231982,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08147" sboTerm="SBO:0000176" id="MAR08147" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08147" sboTerm="SBO:0000176" id="R_MAR08147" name="UDP-alpha-D-galactose:beta-D-glucosyl-(1&lt;-&gt;1)-ceramide 4-beta-D-galactosyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -231953,7 +231990,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08147">
+            <rdf:Description rdf:about="#R_MAR08147">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.-"/>
@@ -231968,19 +232005,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01972g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03107g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01972g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03107g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02328g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02328g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106g" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="brn"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08148" sboTerm="SBO:0000176" id="MAR08148" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08148" sboTerm="SBO:0000176" id="R_MAR08148" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -231988,7 +232025,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08148">
+            <rdf:Description rdf:about="#R_MAR08148">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.228"/>
@@ -232002,16 +232039,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02328g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03107g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02328g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03107g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01960g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01960g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106g" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08149" sboTerm="SBO:0000176" id="MAR08149" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08149" sboTerm="SBO:0000176" id="R_MAR08149" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -232019,7 +232056,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08149">
+            <rdf:Description rdf:about="#R_MAR08149">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.79"/>
@@ -232033,19 +232070,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01960g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03110g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01960g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03110g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01959g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01959g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106g" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG30036"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08150" sboTerm="SBO:0000176" id="MAR08150" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08150" sboTerm="SBO:0000176" id="R_MAR08150" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -232053,7 +232090,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08150">
+            <rdf:Description rdf:about="#R_MAR08150">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.-"/>
@@ -232068,19 +232105,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01959g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03107g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01959g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03107g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01912g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01912g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106g" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG30036"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08151" sboTerm="SBO:0000176" id="MAR08151" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08151" sboTerm="SBO:0000176" id="R_MAR08151" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -232088,7 +232125,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08151">
+            <rdf:Description rdf:about="#R_MAR08151">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.-"/>
@@ -232101,19 +232138,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01912g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03111g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01912g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03111g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01956g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01956g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106g" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="brn"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08152" sboTerm="SBO:0000176" id="MAR08152" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08152" sboTerm="SBO:0000176" id="R_MAR08152" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -232121,7 +232158,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08152">
+            <rdf:Description rdf:about="#R_MAR08152">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.-"/>
@@ -232134,19 +232171,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01956g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03107g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01956g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03107g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01919g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01919g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106g" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="brn"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08166" sboTerm="SBO:0000176" id="MAR08166" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08166" sboTerm="SBO:0000176" id="R_MAR08166" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -232154,7 +232191,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08166">
+            <rdf:Description rdf:about="#R_MAR08166">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.62"/>
@@ -232168,19 +232205,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01905g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03107g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01905g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03107g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01904g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01904g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106g" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG8673"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08168" sboTerm="SBO:0000176" id="MAR08168" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08168" sboTerm="SBO:0000176" id="R_MAR08168" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -232188,7 +232225,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08168">
+            <rdf:Description rdf:about="#R_MAR08168">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.99.-"/>
@@ -232202,19 +232239,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01592g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02010g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01592g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02010g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01590g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01942g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01590g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01942g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039g" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="SiaT"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08173" sboTerm="SBO:0000176" id="MAR08173" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08173" sboTerm="SBO:0000176" id="R_MAR08173" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -232222,7 +232259,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08173">
+            <rdf:Description rdf:about="#R_MAR08173">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.-"/>
@@ -232235,19 +232272,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02014g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03107g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02014g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03107g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02009g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02009g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106g" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="brn"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08175" sboTerm="SBO:0000176" id="MAR08175" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08175" sboTerm="SBO:0000176" id="R_MAR08175" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -232255,7 +232292,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08175">
+            <rdf:Description rdf:about="#R_MAR08175">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.99.-"/>
@@ -232268,19 +232305,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01592g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01941g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01592g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01941g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01590g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02029g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01590g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02029g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039g" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="SiaT"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08178" sboTerm="SBO:0000176" id="MAR08178" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08178" sboTerm="SBO:0000176" id="R_MAR08178" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -232288,7 +232325,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08178">
+            <rdf:Description rdf:about="#R_MAR08178">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.99.-"/>
@@ -232302,19 +232339,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01592g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02030g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01592g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02030g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01590g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02024g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01590g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02024g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039g" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="SiaT"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08185" sboTerm="SBO:0000176" id="MAR08185" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08185" sboTerm="SBO:0000176" id="R_MAR08185" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -232322,7 +232359,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08185">
+            <rdf:Description rdf:about="#R_MAR08185">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.62"/>
@@ -232336,19 +232373,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02011g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03107g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02011g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03107g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02008g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02008g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106g" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG8673"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08186" sboTerm="SBO:0000176" id="MAR08186" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08186" sboTerm="SBO:0000176" id="R_MAR08186" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -232356,7 +232393,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08186">
+            <rdf:Description rdf:about="#R_MAR08186">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.62"/>
@@ -232370,19 +232407,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01946g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03107g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01946g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03107g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01943g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01943g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106g" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG8673"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08187" sboTerm="SBO:0000176" id="MAR08187" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08187" sboTerm="SBO:0000176" id="R_MAR08187" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -232390,7 +232427,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08187">
+            <rdf:Description rdf:about="#R_MAR08187">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.62"/>
@@ -232404,19 +232441,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02032g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03107g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02032g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03107g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02031g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02031g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106g" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG8673"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08194" sboTerm="SBO:0000176" id="MAR08194" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08194" sboTerm="SBO:0000176" id="R_MAR08194" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -232424,7 +232461,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08194">
+            <rdf:Description rdf:about="#R_MAR08194">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.-"/>
@@ -232437,18 +232474,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01959g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02525g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01959g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02525g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01391g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01391g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040g" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="brn"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08197" sboTerm="SBO:0000176" id="MAR08197" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08197" sboTerm="SBO:0000176" id="R_MAR08197" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -232456,7 +232493,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08197">
+            <rdf:Description rdf:about="#R_MAR08197">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/NAGAlby"/>
@@ -232468,16 +232505,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01391l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01391l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01959l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03110l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01959l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03110l" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08201" sboTerm="SBO:0000176" id="MAR08201" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08201" sboTerm="SBO:0000176" id="R_MAR08201" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -232485,7 +232522,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08201">
+            <rdf:Description rdf:about="#R_MAR08201">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.2.1.49"/>
@@ -232498,19 +232535,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01324l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01324l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01959l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03110l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01959l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03110l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG7997"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00786" sboTerm="SBO:0000176" id="MAR00786" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00786" sboTerm="SBO:0000176" id="R_MAR00786" name="beta-D-Galactosyl-1,4-beta-D-glucosylceramide galactohydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -232518,7 +232555,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00786">
+            <rdf:Description rdf:about="#R_MAR00786">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.2.1.23"/>
@@ -232532,12 +232569,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02328l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02328l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01910l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01972l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01910l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01972l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:and>
@@ -232546,7 +232583,7 @@
           </fbc:and>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08217" sboTerm="SBO:0000176" id="MAR08217" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08217" sboTerm="SBO:0000176" id="R_MAR08217" name="Digalactosylceramide galactohydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -232554,7 +232591,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08217">
+            <rdf:Description rdf:about="#R_MAR08217">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.2.1.22"/>
@@ -232568,18 +232605,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01694l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01694l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01679l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01910l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01679l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01910l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG7997"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08219" sboTerm="SBO:0000176" id="MAR08219" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08219" sboTerm="SBO:0000176" id="R_MAR08219" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -232587,7 +232624,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08219">
+            <rdf:Description rdf:about="#R_MAR08219">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/DHEASt"/>
@@ -232599,19 +232636,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01699c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01699c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01430c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01430c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="ifc"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08220" sboTerm="SBO:0000176" id="MAR08220" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08220" sboTerm="SBO:0000176" id="R_MAR08220" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -232619,7 +232656,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08220">
+            <rdf:Description rdf:about="#R_MAR08220">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/DHEAStr"/>
@@ -232631,18 +232668,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01699c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01802c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01699c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01802c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01430c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01803c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01430c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01803c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="ifc"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08224" sboTerm="SBO:0000176" id="MAR08224" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08224" sboTerm="SBO:0000176" id="R_MAR08224" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -232650,7 +232687,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08224">
+            <rdf:Description rdf:about="#R_MAR08224">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GAO2"/>
@@ -232662,18 +232699,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01261c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01947c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01947c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01244c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01244c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG9706"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08226" sboTerm="SBO:0000176" id="MAR08226" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08226" sboTerm="SBO:0000176" id="R_MAR08226" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -232681,7 +232718,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08226">
+            <rdf:Description rdf:about="#R_MAR08226">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GAO2g"/>
@@ -232693,18 +232730,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01261g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01947g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01947g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01244g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01244g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597g" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG9706"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08227" sboTerm="SBO:0000176" id="MAR08227" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08227" sboTerm="SBO:0000176" id="R_MAR08227" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -232712,7 +232749,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08227">
+            <rdf:Description rdf:about="#R_MAR08227">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GAPD"/>
@@ -232724,18 +232761,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01261c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02033c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02033c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01245c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01245c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG9706"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08228" sboTerm="SBO:0000176" id="MAR08228" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08228" sboTerm="SBO:0000176" id="R_MAR08228" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -232743,7 +232780,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08228">
+            <rdf:Description rdf:about="#R_MAR08228">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GARFT"/>
@@ -232755,18 +232792,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01261g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02033g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02033g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01245g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01245g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597g" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG9706"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08237" sboTerm="SBO:0000176" id="MAR08237" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08237" sboTerm="SBO:0000176" id="R_MAR08237" name="Sphinganine-1-phosphate pamlmitaldehyde-lyase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -232774,7 +232811,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08237">
+            <rdf:Description rdf:about="#R_MAR08237">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.1.2.27"/>
@@ -232788,17 +232825,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02928r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02928r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01798r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02113r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01798r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02113r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Sply"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08238" sboTerm="SBO:0000176" id="MAR08238" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08238" sboTerm="SBO:0000176" id="R_MAR08238" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -232806,7 +232843,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08238">
+            <rdf:Description rdf:about="#R_MAR08238">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.1.2.27"/>
@@ -232819,19 +232856,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02930r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02930r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01798r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02674r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01798r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02674r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Sply"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08245" sboTerm="SBO:0000176" id="MAR08245" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08245" sboTerm="SBO:0000176" id="R_MAR08245" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -232839,7 +232876,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08245">
+            <rdf:Description rdf:about="#R_MAR08245">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/SPHMDAc"/>
@@ -232850,15 +232887,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02908c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02908c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02931c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM10005c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02931c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM10005c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08246" sboTerm="SBO:0000176" id="MAR08246" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08246" sboTerm="SBO:0000176" id="R_MAR08246" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -232866,7 +232903,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08246">
+            <rdf:Description rdf:about="#R_MAR08246">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.4.12"/>
@@ -232879,13 +232916,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02931c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02931c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02738c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02929c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02738c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02929c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -232895,7 +232932,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08248" sboTerm="SBO:0000176" id="MAR08248" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08248" sboTerm="SBO:0000176" id="R_MAR08248" name="UDP-glucose:N-acylsphingosine D-glucosyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -232903,7 +232940,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08248">
+            <rdf:Description rdf:about="#R_MAR08248">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.80"/>
@@ -232917,19 +232954,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01430r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03108r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01430r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03108r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01972r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01972r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="GlcT"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08249" sboTerm="SBO:0000176" id="MAR08249" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08249" sboTerm="SBO:0000176" id="R_MAR08249" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -232937,7 +232974,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08249">
+            <rdf:Description rdf:about="#R_MAR08249">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.-"/>
@@ -232950,19 +232987,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01960g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03107g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01960g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03107g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01920g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01920g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106g" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="brn"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08250" sboTerm="SBO:0000176" id="MAR08250" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08250" sboTerm="SBO:0000176" id="R_MAR08250" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -232970,7 +233007,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08250">
+            <rdf:Description rdf:about="#R_MAR08250">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.-"/>
@@ -232983,19 +233020,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01920g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03107g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01920g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03107g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01918g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01918g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106g" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="brn"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08251" sboTerm="SBO:0000176" id="MAR08251" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08251" sboTerm="SBO:0000176" id="R_MAR08251" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -233003,7 +233040,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08251">
+            <rdf:Description rdf:about="#R_MAR08251">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.-"/>
@@ -233016,19 +233053,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01918g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03107g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01918g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03107g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01917g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01917g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106g" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="brn"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00453" sboTerm="SBO:0000176" id="MAR00453" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00453" sboTerm="SBO:0000176" id="R_MAR00453" name="glycerol:NADP+ oxidoreductase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -233037,7 +233074,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00453">
+            <rdf:Description rdf:about="#R_MAR00453">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.1"/>
@@ -233053,13 +233090,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01981c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01981c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01983c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01983c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -233069,7 +233106,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00456" sboTerm="SBO:0000176" id="MAR00456" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00456" sboTerm="SBO:0000176" id="R_MAR00456" name="D-Glyceraldehyde:NAD+ oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -233078,7 +233115,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00456">
+            <rdf:Description rdf:about="#R_MAR00456">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.2.1.3"/>
@@ -233091,14 +233128,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01981c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01981c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01982c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02553c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01982c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02553c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -233106,7 +233143,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00458" sboTerm="SBO:0000176" id="MAR00458" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00458" sboTerm="SBO:0000176" id="R_MAR00458" name="glycerol:NADP+ oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -233115,7 +233152,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00458">
+            <rdf:Description rdf:about="#R_MAR00458">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.1"/>
@@ -233131,13 +233168,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01983m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01983m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01981m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01981m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -233147,7 +233184,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00459" sboTerm="SBO:0000176" id="MAR00459" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00459" sboTerm="SBO:0000176" id="R_MAR00459" name="D-Glyceraldehyde:NAD+ oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -233156,7 +233193,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00459">
+            <rdf:Description rdf:about="#R_MAR00459">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.2.1.3"/>
@@ -233169,14 +233206,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01981m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01981m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01982m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01982m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -233184,7 +233221,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00463" sboTerm="SBO:0000176" id="MAR00463" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00463" sboTerm="SBO:0000176" id="R_MAR00463" name="phosphatidylcholine 2-acylhydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -233193,7 +233230,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00463">
+            <rdf:Description rdf:about="#R_MAR00463">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.4"/>
@@ -233205,16 +233242,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02684r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02684r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00656r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM10005r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00656r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM10005r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR00486" sboTerm="SBO:0000176" id="MAR00486" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00486" sboTerm="SBO:0000176" id="R_MAR00486" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -233223,7 +233260,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00486">
+            <rdf:Description rdf:about="#R_MAR00486">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.15"/>
@@ -233234,12 +233271,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02345c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02914c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02345c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02914c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00484c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00484c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -233248,7 +233285,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00487" sboTerm="SBO:0000176" id="MAR00487" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00487" sboTerm="SBO:0000176" id="R_MAR00487" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -233257,7 +233294,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00487">
+            <rdf:Description rdf:about="#R_MAR00487">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.15"/>
@@ -233268,12 +233305,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02914c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03050c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02914c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03050c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00502c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00502c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -233282,7 +233319,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00488" sboTerm="SBO:0000176" id="MAR00488" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00488" sboTerm="SBO:0000176" id="R_MAR00488" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -233291,7 +233328,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00488">
+            <rdf:Description rdf:about="#R_MAR00488">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.15"/>
@@ -233302,12 +233339,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02495c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02914c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02495c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02914c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00493c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00493c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -233316,7 +233353,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00489" sboTerm="SBO:0000176" id="MAR00489" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00489" sboTerm="SBO:0000176" id="R_MAR00489" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -233325,7 +233362,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00489">
+            <rdf:Description rdf:about="#R_MAR00489">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.15"/>
@@ -233336,12 +233373,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00129c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02914c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00129c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02914c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00471c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00471c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -233350,7 +233387,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00490" sboTerm="SBO:0000176" id="MAR00490" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00490" sboTerm="SBO:0000176" id="R_MAR00490" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -233359,7 +233396,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00490">
+            <rdf:Description rdf:about="#R_MAR00490">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.15"/>
@@ -233370,12 +233407,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00118c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02914c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00118c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02914c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00463c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00463c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -233384,7 +233421,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00491" sboTerm="SBO:0000176" id="MAR00491" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00491" sboTerm="SBO:0000176" id="R_MAR00491" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -233393,7 +233430,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00491">
+            <rdf:Description rdf:about="#R_MAR00491">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.15"/>
@@ -233404,12 +233441,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01141c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02914c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01141c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02914c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00454c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00454c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -233418,7 +233455,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00492" sboTerm="SBO:0000176" id="MAR00492" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00492" sboTerm="SBO:0000176" id="R_MAR00492" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -233427,7 +233464,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00492">
+            <rdf:Description rdf:about="#R_MAR00492">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.15"/>
@@ -233438,12 +233475,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02689c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02914c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02689c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02914c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00498c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00498c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -233452,7 +233489,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00493" sboTerm="SBO:0000176" id="MAR00493" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00493" sboTerm="SBO:0000176" id="R_MAR00493" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -233461,7 +233498,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00493">
+            <rdf:Description rdf:about="#R_MAR00493">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.15"/>
@@ -233472,12 +233509,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02678c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02914c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02678c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02914c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00496c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00496c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -233486,7 +233523,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00494" sboTerm="SBO:0000176" id="MAR00494" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00494" sboTerm="SBO:0000176" id="R_MAR00494" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -233495,7 +233532,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00494">
+            <rdf:Description rdf:about="#R_MAR00494">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.15"/>
@@ -233505,12 +233542,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02677c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02914c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02677c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02914c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00497c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00497c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -233519,7 +233556,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00495" sboTerm="SBO:0000176" id="MAR00495" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00495" sboTerm="SBO:0000176" id="R_MAR00495" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -233528,7 +233565,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00495">
+            <rdf:Description rdf:about="#R_MAR00495">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.15"/>
@@ -233539,12 +233576,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01191c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02914c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01191c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02914c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00461c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00461c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -233553,7 +233590,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00496" sboTerm="SBO:0000176" id="MAR00496" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00496" sboTerm="SBO:0000176" id="R_MAR00496" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -233562,7 +233599,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00496">
+            <rdf:Description rdf:about="#R_MAR00496">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.15"/>
@@ -233573,12 +233610,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02101c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02914c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02101c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02914c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00481c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00481c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -233587,7 +233624,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00497" sboTerm="SBO:0000176" id="MAR00497" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00497" sboTerm="SBO:0000176" id="R_MAR00497" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -233596,7 +233633,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00497">
+            <rdf:Description rdf:about="#R_MAR00497">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.15"/>
@@ -233607,12 +233644,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00004c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02914c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00004c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02914c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00438c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00438c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -233621,7 +233658,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00498" sboTerm="SBO:0000176" id="MAR00498" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00498" sboTerm="SBO:0000176" id="R_MAR00498" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -233630,7 +233667,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00498">
+            <rdf:Description rdf:about="#R_MAR00498">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.15"/>
@@ -233641,12 +233678,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01237c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02914c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01237c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02914c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00469c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00469c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -233655,7 +233692,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00499" sboTerm="SBO:0000176" id="MAR00499" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00499" sboTerm="SBO:0000176" id="R_MAR00499" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -233664,7 +233701,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00499">
+            <rdf:Description rdf:about="#R_MAR00499">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.15"/>
@@ -233675,12 +233712,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02914c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02941c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02914c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02941c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00499c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00499c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -233689,7 +233726,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00500" sboTerm="SBO:0000176" id="MAR00500" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00500" sboTerm="SBO:0000176" id="R_MAR00500" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -233698,7 +233735,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00500">
+            <rdf:Description rdf:about="#R_MAR00500">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.15"/>
@@ -233709,12 +233746,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00020c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02914c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00020c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02914c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00448c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00448c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -233723,7 +233760,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00501" sboTerm="SBO:0000176" id="MAR00501" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00501" sboTerm="SBO:0000176" id="R_MAR00501" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -233732,7 +233769,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00501">
+            <rdf:Description rdf:about="#R_MAR00501">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.15"/>
@@ -233743,12 +233780,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01586c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02914c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01586c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02914c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00474c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00474c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -233757,7 +233794,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00502" sboTerm="SBO:0000176" id="MAR00502" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00502" sboTerm="SBO:0000176" id="R_MAR00502" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -233766,7 +233803,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00502">
+            <rdf:Description rdf:about="#R_MAR00502">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.15"/>
@@ -233777,12 +233814,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02647c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02914c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02647c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02914c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00495c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00495c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -233791,7 +233828,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00503" sboTerm="SBO:0000176" id="MAR00503" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00503" sboTerm="SBO:0000176" id="R_MAR00503" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -233800,7 +233837,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00503">
+            <rdf:Description rdf:about="#R_MAR00503">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.15"/>
@@ -233811,12 +233848,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00127c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02914c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00127c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02914c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00470c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00470c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -233825,7 +233862,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00504" sboTerm="SBO:0000176" id="MAR00504" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00504" sboTerm="SBO:0000176" id="R_MAR00504" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -233834,7 +233871,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00504">
+            <rdf:Description rdf:about="#R_MAR00504">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.15"/>
@@ -233845,12 +233882,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00116c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02914c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00116c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02914c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00462c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00462c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -233859,7 +233896,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00505" sboTerm="SBO:0000176" id="MAR00505" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00505" sboTerm="SBO:0000176" id="R_MAR00505" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -233868,7 +233905,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00505">
+            <rdf:Description rdf:about="#R_MAR00505">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.15"/>
@@ -233879,12 +233916,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00106c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02914c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00106c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02914c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00458c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00458c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -233893,7 +233930,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00506" sboTerm="SBO:0000176" id="MAR00506" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00506" sboTerm="SBO:0000176" id="R_MAR00506" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -233901,7 +233938,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00506">
+            <rdf:Description rdf:about="#R_MAR00506">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.15"/>
@@ -233912,12 +233949,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02612c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02914c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02612c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02914c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00494c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00494c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -233926,7 +233963,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00507" sboTerm="SBO:0000176" id="MAR00507" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00507" sboTerm="SBO:0000176" id="R_MAR00507" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -233935,7 +233972,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00507">
+            <rdf:Description rdf:about="#R_MAR00507">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.15"/>
@@ -233946,12 +233983,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01773c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02914c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01773c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02914c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00478c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00478c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -233960,7 +233997,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00508" sboTerm="SBO:0000176" id="MAR00508" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00508" sboTerm="SBO:0000176" id="R_MAR00508" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -233969,7 +234006,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00508">
+            <rdf:Description rdf:about="#R_MAR00508">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.15"/>
@@ -233980,12 +234017,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00018c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02914c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00018c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02914c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00447c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00447c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -233994,7 +234031,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00509" sboTerm="SBO:0000176" id="MAR00509" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00509" sboTerm="SBO:0000176" id="R_MAR00509" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -234003,7 +234040,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00509">
+            <rdf:Description rdf:about="#R_MAR00509">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.15"/>
@@ -234014,12 +234051,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00007c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02914c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00007c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02914c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00442c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00442c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -234028,7 +234065,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00510" sboTerm="SBO:0000176" id="MAR00510" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00510" sboTerm="SBO:0000176" id="R_MAR00510" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -234037,7 +234074,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00510">
+            <rdf:Description rdf:about="#R_MAR00510">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.15"/>
@@ -234048,12 +234085,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01236c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02914c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01236c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02914c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00468c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00468c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -234062,7 +234099,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00511" sboTerm="SBO:0000176" id="MAR00511" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00511" sboTerm="SBO:0000176" id="R_MAR00511" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -234071,7 +234108,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00511">
+            <rdf:Description rdf:about="#R_MAR00511">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.15"/>
@@ -234082,12 +234119,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00123c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02914c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00123c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02914c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00465c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00465c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -234096,7 +234133,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00512" sboTerm="SBO:0000176" id="MAR00512" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00512" sboTerm="SBO:0000176" id="R_MAR00512" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -234105,7 +234142,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00512">
+            <rdf:Description rdf:about="#R_MAR00512">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.15"/>
@@ -234116,12 +234153,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00101c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02914c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00101c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02914c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00453c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00453c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -234130,7 +234167,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00513" sboTerm="SBO:0000176" id="MAR00513" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00513" sboTerm="SBO:0000176" id="R_MAR00513" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -234138,7 +234175,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00513">
+            <rdf:Description rdf:about="#R_MAR00513">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.15"/>
@@ -234149,12 +234186,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02052c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02914c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02052c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02914c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00480c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00480c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -234163,7 +234200,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00514" sboTerm="SBO:0000176" id="MAR00514" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00514" sboTerm="SBO:0000176" id="R_MAR00514" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -234172,7 +234209,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00514">
+            <rdf:Description rdf:about="#R_MAR00514">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.15"/>
@@ -234183,12 +234220,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01725c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02914c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01725c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02914c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00477c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00477c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -234197,7 +234234,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00515" sboTerm="SBO:0000176" id="MAR00515" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00515" sboTerm="SBO:0000176" id="R_MAR00515" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -234206,7 +234243,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00515">
+            <rdf:Description rdf:about="#R_MAR00515">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.15"/>
@@ -234217,12 +234254,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00016c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02914c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00016c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02914c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00446c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00446c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -234231,7 +234268,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00516" sboTerm="SBO:0000176" id="MAR00516" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00516" sboTerm="SBO:0000176" id="R_MAR00516" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -234240,7 +234277,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00516">
+            <rdf:Description rdf:about="#R_MAR00516">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.15"/>
@@ -234251,12 +234288,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00006c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02914c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00006c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02914c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00441c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00441c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -234265,7 +234302,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00517" sboTerm="SBO:0000176" id="MAR00517" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00517" sboTerm="SBO:0000176" id="R_MAR00517" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -234274,7 +234311,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00517">
+            <rdf:Description rdf:about="#R_MAR00517">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.15"/>
@@ -234285,12 +234322,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02914c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03047c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02914c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03047c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00501c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00501c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -234299,7 +234336,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00518" sboTerm="SBO:0000176" id="MAR00518" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00518" sboTerm="SBO:0000176" id="R_MAR00518" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -234308,7 +234345,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00518">
+            <rdf:Description rdf:about="#R_MAR00518">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.15"/>
@@ -234319,12 +234356,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02914c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02971c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02914c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02971c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00500c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00500c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -234333,7 +234370,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00519" sboTerm="SBO:0000176" id="MAR00519" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00519" sboTerm="SBO:0000176" id="R_MAR00519" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -234342,7 +234379,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00519">
+            <rdf:Description rdf:about="#R_MAR00519">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.15"/>
@@ -234353,12 +234390,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00025c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02914c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00025c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02914c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00449c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00449c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -234367,7 +234404,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00520" sboTerm="SBO:0000176" id="MAR00520" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00520" sboTerm="SBO:0000176" id="R_MAR00520" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -234376,7 +234413,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00520">
+            <rdf:Description rdf:about="#R_MAR00520">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.15"/>
@@ -234387,12 +234424,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02110c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02914c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02110c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02914c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00482c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00482c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -234401,7 +234438,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00521" sboTerm="SBO:0000176" id="MAR00521" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00521" sboTerm="SBO:0000176" id="R_MAR00521" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -234410,7 +234447,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00521">
+            <rdf:Description rdf:about="#R_MAR00521">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.15"/>
@@ -234421,12 +234458,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02112c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02914c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02112c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02914c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00483c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00483c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -234435,7 +234472,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00522" sboTerm="SBO:0000176" id="MAR00522" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00522" sboTerm="SBO:0000176" id="R_MAR00522" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -234444,7 +234481,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00522">
+            <rdf:Description rdf:about="#R_MAR00522">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.15"/>
@@ -234455,12 +234492,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02390c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02914c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02390c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02914c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00492c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00492c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -234469,7 +234506,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00523" sboTerm="SBO:0000176" id="MAR00523" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00523" sboTerm="SBO:0000176" id="R_MAR00523" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -234478,7 +234515,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00523">
+            <rdf:Description rdf:about="#R_MAR00523">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.15"/>
@@ -234489,12 +234526,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00108c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02914c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00108c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02914c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00457c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00457c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -234503,7 +234540,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00524" sboTerm="SBO:0000176" id="MAR00524" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00524" sboTerm="SBO:0000176" id="R_MAR00524" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -234512,7 +234549,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00524">
+            <rdf:Description rdf:about="#R_MAR00524">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.15"/>
@@ -234523,12 +234560,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00125c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02914c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00125c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02914c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00464c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00464c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -234537,7 +234574,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00525" sboTerm="SBO:0000176" id="MAR00525" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00525" sboTerm="SBO:0000176" id="R_MAR00525" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -234546,7 +234583,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00525">
+            <rdf:Description rdf:about="#R_MAR00525">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.15"/>
@@ -234557,12 +234594,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00103c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02914c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00103c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02914c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00452c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00452c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -234571,7 +234608,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00526" sboTerm="SBO:0000176" id="MAR00526" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00526" sboTerm="SBO:0000176" id="R_MAR00526" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -234580,7 +234617,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00526">
+            <rdf:Description rdf:about="#R_MAR00526">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.15"/>
@@ -234591,12 +234628,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00121c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02914c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00121c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02914c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00459c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00459c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -234605,7 +234642,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00527" sboTerm="SBO:0000176" id="MAR00527" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00527" sboTerm="SBO:0000176" id="R_MAR00527" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -234614,7 +234651,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00527">
+            <rdf:Description rdf:about="#R_MAR00527">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.15"/>
@@ -234625,12 +234662,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00134c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02914c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00134c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02914c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00466c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00466c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -234639,7 +234676,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00528" sboTerm="SBO:0000176" id="MAR00528" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00528" sboTerm="SBO:0000176" id="R_MAR00528" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -234648,7 +234685,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00528">
+            <rdf:Description rdf:about="#R_MAR00528">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.15"/>
@@ -234659,12 +234696,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00113c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02914c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00113c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02914c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00455c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00455c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -234673,7 +234710,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00529" sboTerm="SBO:0000176" id="MAR00529" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00529" sboTerm="SBO:0000176" id="R_MAR00529" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -234682,7 +234719,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00529">
+            <rdf:Description rdf:about="#R_MAR00529">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.15"/>
@@ -234693,12 +234730,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00095c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02914c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00095c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02914c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00450c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00450c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -234707,7 +234744,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00530" sboTerm="SBO:0000176" id="MAR00530" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00530" sboTerm="SBO:0000176" id="R_MAR00530" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -234716,7 +234753,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00530">
+            <rdf:Description rdf:about="#R_MAR00530">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.15"/>
@@ -234727,12 +234764,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00012c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02914c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00012c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02914c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00439c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00439c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -234741,7 +234778,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00531" sboTerm="SBO:0000176" id="MAR00531" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00531" sboTerm="SBO:0000176" id="R_MAR00531" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -234750,7 +234787,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00531">
+            <rdf:Description rdf:about="#R_MAR00531">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.15"/>
@@ -234761,12 +234798,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00343c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02914c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00343c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02914c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00444c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00444c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -234775,7 +234812,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00532" sboTerm="SBO:0000176" id="MAR00532" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00532" sboTerm="SBO:0000176" id="R_MAR00532" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -234784,7 +234821,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00532">
+            <rdf:Description rdf:about="#R_MAR00532">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.15"/>
@@ -234795,12 +234832,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00262c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02914c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00262c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02914c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00436c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00436c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -234809,7 +234846,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00533" sboTerm="SBO:0000176" id="MAR00533" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00533" sboTerm="SBO:0000176" id="R_MAR00533" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -234818,7 +234855,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00533">
+            <rdf:Description rdf:about="#R_MAR00533">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.15"/>
@@ -234829,12 +234866,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00317c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02914c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00317c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02914c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00443c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00443c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -234843,7 +234880,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00534" sboTerm="SBO:0000176" id="MAR00534" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00534" sboTerm="SBO:0000176" id="R_MAR00534" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -234852,7 +234889,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00534">
+            <rdf:Description rdf:about="#R_MAR00534">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.15"/>
@@ -234863,12 +234900,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02391c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02914c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02391c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02914c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00491c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00491c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -234877,7 +234914,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00535" sboTerm="SBO:0000176" id="MAR00535" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00535" sboTerm="SBO:0000176" id="R_MAR00535" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -234886,7 +234923,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00535">
+            <rdf:Description rdf:about="#R_MAR00535">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.15"/>
@@ -234897,12 +234934,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01934c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02914c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01934c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02914c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00479c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00479c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -234911,7 +234948,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00536" sboTerm="SBO:0000176" id="MAR00536" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00536" sboTerm="SBO:0000176" id="R_MAR00536" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -234920,7 +234957,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00536">
+            <rdf:Description rdf:about="#R_MAR00536">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.15"/>
@@ -234931,12 +234968,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01697c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02914c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01697c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02914c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00476c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00476c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -234945,7 +234982,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00537" sboTerm="SBO:0000176" id="MAR00537" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00537" sboTerm="SBO:0000176" id="R_MAR00537" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -234954,7 +234991,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00537">
+            <rdf:Description rdf:about="#R_MAR00537">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.15"/>
@@ -234965,12 +235002,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01364c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02914c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01364c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02914c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00472c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00472c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -234979,7 +235016,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00538" sboTerm="SBO:0000176" id="MAR00538" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00538" sboTerm="SBO:0000176" id="R_MAR00538" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -234988,7 +235025,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00538">
+            <rdf:Description rdf:about="#R_MAR00538">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.15"/>
@@ -234999,12 +235036,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00119c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02914c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00119c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02914c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00460c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00460c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -235013,7 +235050,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00539" sboTerm="SBO:0000176" id="MAR00539" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00539" sboTerm="SBO:0000176" id="R_MAR00539" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -235022,7 +235059,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00539">
+            <rdf:Description rdf:about="#R_MAR00539">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.15"/>
@@ -235033,12 +235070,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00131c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02914c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00131c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02914c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00467c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00467c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -235047,7 +235084,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00540" sboTerm="SBO:0000176" id="MAR00540" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00540" sboTerm="SBO:0000176" id="R_MAR00540" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -235056,7 +235093,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00540">
+            <rdf:Description rdf:about="#R_MAR00540">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.15"/>
@@ -235067,12 +235104,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00110c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02914c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00110c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02914c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00456c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00456c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -235081,7 +235118,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00541" sboTerm="SBO:0000176" id="MAR00541" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00541" sboTerm="SBO:0000176" id="R_MAR00541" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -235090,7 +235127,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00541">
+            <rdf:Description rdf:about="#R_MAR00541">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.15"/>
@@ -235101,12 +235138,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00093c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02914c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00093c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02914c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00451c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00451c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -235115,7 +235152,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00542" sboTerm="SBO:0000176" id="MAR00542" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00542" sboTerm="SBO:0000176" id="R_MAR00542" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -235124,7 +235161,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00542">
+            <rdf:Description rdf:about="#R_MAR00542">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.15"/>
@@ -235135,12 +235172,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00009c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02914c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00009c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02914c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00440c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00440c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -235149,7 +235186,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00543" sboTerm="SBO:0000176" id="MAR00543" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00543" sboTerm="SBO:0000176" id="R_MAR00543" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -235158,7 +235195,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00543">
+            <rdf:Description rdf:about="#R_MAR00543">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.15"/>
@@ -235169,12 +235206,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00023c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02914c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00023c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02914c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00445c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00445c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -235183,7 +235220,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00544" sboTerm="SBO:0000176" id="MAR00544" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00544" sboTerm="SBO:0000176" id="R_MAR00544" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -235192,7 +235229,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00544">
+            <rdf:Description rdf:about="#R_MAR00544">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.15"/>
@@ -235203,12 +235240,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00264c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02914c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00264c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02914c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00437c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00437c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -235217,7 +235254,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00588" sboTerm="SBO:0000176" id="MAR00588" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00588" sboTerm="SBO:0000176" id="R_MAR00588" name="acyl-CoA:1-acyl-sn-glycerol-3-phosphate 2-O-acyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -235226,7 +235263,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00588">
+            <rdf:Description rdf:about="#R_MAR00588">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.51"/>
@@ -235238,12 +235275,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM10006c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM10007c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM10006c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM10007c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02733c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02733c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -235255,7 +235292,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00596" sboTerm="SBO:0000176" id="MAR00596" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00596" sboTerm="SBO:0000176" id="R_MAR00596" name="1,2-diacyl-sn-glycerol 3-phosphate phosphohydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -235264,7 +235301,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00596">
+            <rdf:Description rdf:about="#R_MAR00596">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.3.4"/>
@@ -235276,12 +235313,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02733c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02733c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00240c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00240c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -235294,7 +235331,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00673" sboTerm="SBO:0000176" id="MAR00673" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00673" sboTerm="SBO:0000176" id="R_MAR00673" name="ATP:acylglycerol 3-phosphotransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -235302,7 +235339,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00673">
+            <rdf:Description rdf:about="#R_MAR00673">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.1.94"/>
@@ -235315,19 +235352,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00509c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00509c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM10006c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM10006c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Mulk"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00674" sboTerm="SBO:0000176" id="MAR00674" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00674" sboTerm="SBO:0000176" id="R_MAR00674" name="ATP:acylglycerol 3-phosphotransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -235335,7 +235372,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00674">
+            <rdf:Description rdf:about="#R_MAR00674">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.1.94"/>
@@ -235347,19 +235384,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00504c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00504c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM10006c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM10006c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Mulk"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00675" sboTerm="SBO:0000176" id="MAR00675" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00675" sboTerm="SBO:0000176" id="R_MAR00675" name="ATP:acylglycerol 3-phosphotransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -235367,7 +235404,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00675">
+            <rdf:Description rdf:about="#R_MAR00675">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.1.94"/>
@@ -235379,19 +235416,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00505c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00505c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM10006c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM10006c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Mulk"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00676" sboTerm="SBO:0000176" id="MAR00676" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00676" sboTerm="SBO:0000176" id="R_MAR00676" name="ATP:acylglycerol 3-phosphotransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -235399,7 +235436,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00676">
+            <rdf:Description rdf:about="#R_MAR00676">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.1.94"/>
@@ -235411,19 +235448,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00507c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00507c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM10006c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM10006c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Mulk"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00677" sboTerm="SBO:0000176" id="MAR00677" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00677" sboTerm="SBO:0000176" id="R_MAR00677" name="ATP:acylglycerol 3-phosphotransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -235431,7 +235468,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00677">
+            <rdf:Description rdf:about="#R_MAR00677">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.1.94"/>
@@ -235443,19 +235480,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00506c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00506c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM10006c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM10006c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Mulk"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00678" sboTerm="SBO:0000176" id="MAR00678" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00678" sboTerm="SBO:0000176" id="R_MAR00678" name="ATP:acylglycerol 3-phosphotransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -235463,7 +235500,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00678">
+            <rdf:Description rdf:about="#R_MAR00678">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.1.94"/>
@@ -235475,19 +235512,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00508c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00508c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM10006c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM10006c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Mulk"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04296" sboTerm="SBO:0000176" id="MAR04296" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04296" sboTerm="SBO:0000176" id="R_MAR04296" name="ethanolamine-phosphate phosphate-lyase (deaminating" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -235496,7 +235533,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04296">
+            <rdf:Description rdf:about="#R_MAR04296">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.3.2"/>
@@ -235511,20 +235548,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01798c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01798c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01249c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02578c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01249c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02578c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG8745"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04390" sboTerm="SBO:0000176" id="MAR04390" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04390" sboTerm="SBO:0000176" id="R_MAR04390" name="Glycerone phosphate phosphohydrolase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -235533,7 +235570,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04390">
+            <rdf:Description rdf:about="#R_MAR04390">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.3.1"/>
@@ -235546,12 +235583,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01690e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01690e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01984e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01984e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -235564,7 +235601,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05254" sboTerm="SBO:0000176" id="MAR05254" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05254" sboTerm="SBO:0000176" id="R_MAR05254" name="phosphatidylcholine 2-acylhydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -235573,7 +235610,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05254">
+            <rdf:Description rdf:about="#R_MAR05254">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.4"/>
@@ -235585,16 +235622,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02684l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02684l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00656l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM10005l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00656l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM10005l" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07599" sboTerm="SBO:0000176" id="MAR07599" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07599" sboTerm="SBO:0000176" id="R_MAR07599" name="CDPethanolamine:1-alkyl-2-acylglycerol ethanolaminephosphotransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -235602,7 +235639,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07599">
+            <rdf:Description rdf:about="#R_MAR07599">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.8.1"/>
@@ -235616,13 +235653,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00514c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01428c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00514c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01428c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00515c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01590c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00515c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01590c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -235631,7 +235668,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00448" sboTerm="SBO:0000176" id="MAR00448" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00448" sboTerm="SBO:0000176" id="R_MAR00448" name="ATP:glycerol 3-phosphotransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -235640,7 +235677,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00448">
+            <rdf:Description rdf:about="#R_MAR00448">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.1.30"/>
@@ -235654,13 +235691,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01983m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01983m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02914m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02914m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -235669,7 +235706,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00450" sboTerm="SBO:0000176" id="MAR00450" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00450" sboTerm="SBO:0000176" id="R_MAR00450" name="ATP:glycerol 3-phosphotransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -235678,7 +235715,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00450">
+            <rdf:Description rdf:about="#R_MAR00450">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.1.30"/>
@@ -235692,13 +235729,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01983c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01983c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02914c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02914c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -235707,7 +235744,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00468" sboTerm="SBO:0000176" id="MAR00468" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00468" sboTerm="SBO:0000176" id="R_MAR00468" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -235716,7 +235753,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00468">
+            <rdf:Description rdf:about="#R_MAR00468">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.8.2"/>
@@ -235729,19 +235766,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00233c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01425c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00233c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01425c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01395c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01590c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01395c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01590c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="bbc"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00478" sboTerm="SBO:0000176" id="MAR00478" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00478" sboTerm="SBO:0000176" id="R_MAR00478" name="sn-Glycerol-3-phosphate:NADP+ 2-oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -235750,7 +235787,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00478">
+            <rdf:Description rdf:about="#R_MAR00478">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.94"/>
@@ -235766,19 +235803,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01690c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01690c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02914c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02914c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Gpdh1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00479" sboTerm="SBO:0000176" id="MAR00479" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00479" sboTerm="SBO:0000176" id="R_MAR00479" name="sn-Glycerol-3-phosphate:NAD+ 2-oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -235787,7 +235824,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00479">
+            <rdf:Description rdf:about="#R_MAR00479">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.8"/>
@@ -235801,19 +235838,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01690c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01690c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02552c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02914c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02914c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Gpdh1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00481" sboTerm="SBO:0000176" id="MAR00481" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00481" sboTerm="SBO:0000176" id="R_MAR00481" name="sn-Glycerol-3-phosphate:NAD+ 2-oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -235822,7 +235859,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00481">
+            <rdf:Description rdf:about="#R_MAR00481">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.8"/>
@@ -235835,19 +235872,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01690x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01690x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02552x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02914x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02914x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Gpdh1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00483" sboTerm="SBO:0000176" id="MAR00483" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00483" sboTerm="SBO:0000176" id="R_MAR00483" name="sn-glycerol 3-phosphate:quinone oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -235856,7 +235893,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00483">
+            <rdf:Description rdf:about="#R_MAR00483">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.5.3"/>
@@ -235869,18 +235906,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02914c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03103m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02914c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03103m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01690c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03102m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01690c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03102m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Gpo1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00482" sboTerm="SBO:0000176" id="MAR00482" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00482" sboTerm="SBO:0000176" id="R_MAR00482" name="sn-Glycerol-3-phosphate:(acceptor) 2-oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -235888,7 +235925,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00482">
+            <rdf:Description rdf:about="#R_MAR00482">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.5.3"/>
@@ -235902,18 +235939,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01802c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02914c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01802c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02914c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01690c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01803c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01690c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01803c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Gpo1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00579" sboTerm="SBO:0000176" id="MAR00579" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00579" sboTerm="SBO:0000176" id="R_MAR00579" name="acyl-CoA:sn-glycerol-3-phosphate 1-O-acyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -235922,7 +235959,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00579">
+            <rdf:Description rdf:about="#R_MAR00579">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.15"/>
@@ -235934,12 +235971,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02914m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM10007m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02914m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM10007m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM10006m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM10006m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -235948,7 +235985,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00580" sboTerm="SBO:0000176" id="MAR00580" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00580" sboTerm="SBO:0000176" id="R_MAR00580" name="acyl-CoA:1-acyl-sn-glycerol-3-phosphate 2-O-acyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -235957,7 +235994,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00580">
+            <rdf:Description rdf:about="#R_MAR00580">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.51"/>
@@ -235969,12 +236006,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM10006m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM10007m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM10006m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM10007m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02727m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02727m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -235986,7 +236023,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00581" sboTerm="SBO:0000176" id="MAR00581" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00581" sboTerm="SBO:0000176" id="R_MAR00581" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -235995,7 +236032,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00581">
+            <rdf:Description rdf:about="#R_MAR00581">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.7.41"/>
@@ -236006,19 +236043,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01623m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02727m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01623m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02727m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01426m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01426m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Cds"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00582" sboTerm="SBO:0000176" id="MAR00582" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00582" sboTerm="SBO:0000176" id="R_MAR00582" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -236027,7 +236064,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00582">
+            <rdf:Description rdf:about="#R_MAR00582">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.8.5"/>
@@ -236038,19 +236075,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01426m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02914m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01426m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02914m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01590m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02717m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01590m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02717m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="PGS1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00584" sboTerm="SBO:0000176" id="MAR00584" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00584" sboTerm="SBO:0000176" id="R_MAR00584" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -236059,7 +236096,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00584">
+            <rdf:Description rdf:about="#R_MAR00584">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.3.27"/>
@@ -236070,15 +236107,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02717m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02717m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02715m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02715m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR00586" sboTerm="SBO:0000176" id="MAR00586" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00586" sboTerm="SBO:0000176" id="R_MAR00586" name="CDP-diacylglycerol:phosphatidylglycerol 3-phosphatidyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -236087,7 +236124,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00586">
+            <rdf:Description rdf:about="#R_MAR00586">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.8.-"/>
@@ -236100,19 +236137,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01426m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02715m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01426m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02715m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01589m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01590m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01589m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01590m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CLS"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00589" sboTerm="SBO:0000176" id="MAR00589" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00589" sboTerm="SBO:0000176" id="R_MAR00589" name="acyl-CoA:1-acyl-sn-glycerol-3-phosphate 2-O-acyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -236121,7 +236158,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00589">
+            <rdf:Description rdf:about="#R_MAR00589">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.51"/>
@@ -236133,12 +236170,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM10006c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM10007c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM10006c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM10007c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02728c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02728c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -236150,7 +236187,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00590" sboTerm="SBO:0000176" id="MAR00590" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00590" sboTerm="SBO:0000176" id="R_MAR00590" name="acyl-CoA:1-acyl-sn-glycerol-3-phosphate 2-O-acyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -236159,7 +236196,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00590">
+            <rdf:Description rdf:about="#R_MAR00590">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.51"/>
@@ -236171,12 +236208,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM10006c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM10007c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM10006c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM10007c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02729c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02729c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -236188,7 +236225,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00591" sboTerm="SBO:0000176" id="MAR00591" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00591" sboTerm="SBO:0000176" id="R_MAR00591" name="acyl-CoA:1-acyl-sn-glycerol-3-phosphate 2-O-acyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -236197,7 +236234,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00591">
+            <rdf:Description rdf:about="#R_MAR00591">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.51"/>
@@ -236209,12 +236246,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM10006c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM10007c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM10006c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM10007c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02731c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02731c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -236226,7 +236263,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00592" sboTerm="SBO:0000176" id="MAR00592" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00592" sboTerm="SBO:0000176" id="R_MAR00592" name="acyl-CoA:1-acyl-sn-glycerol-3-phosphate 2-O-acyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -236235,7 +236272,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00592">
+            <rdf:Description rdf:about="#R_MAR00592">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.51"/>
@@ -236247,12 +236284,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM10006c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM10007c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM10006c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM10007c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02730c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02730c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -236264,7 +236301,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00593" sboTerm="SBO:0000176" id="MAR00593" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00593" sboTerm="SBO:0000176" id="R_MAR00593" name="acyl-CoA:1-acyl-sn-glycerol-3-phosphate 2-O-acyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -236273,7 +236310,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00593">
+            <rdf:Description rdf:about="#R_MAR00593">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.51"/>
@@ -236285,12 +236322,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM10006c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM10007c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM10006c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM10007c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02732c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02732c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -236302,7 +236339,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00594" sboTerm="SBO:0000176" id="MAR00594" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00594" sboTerm="SBO:0000176" id="R_MAR00594" name="acyl-CoA:1-acyl-sn-glycerol-3-phosphate 2-O-acyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -236311,7 +236348,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00594">
+            <rdf:Description rdf:about="#R_MAR00594">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.51"/>
@@ -236323,12 +236360,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00473c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01269c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00473c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01269c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02726c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02726c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -236340,7 +236377,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00597" sboTerm="SBO:0000176" id="MAR00597" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00597" sboTerm="SBO:0000176" id="R_MAR00597" name="1,2-diacyl-sn-glycerol 3-phosphate phosphohydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -236349,7 +236386,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00597">
+            <rdf:Description rdf:about="#R_MAR00597">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.3.4"/>
@@ -236361,12 +236398,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02728c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02728c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00235c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00235c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -236379,7 +236416,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00598" sboTerm="SBO:0000176" id="MAR00598" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00598" sboTerm="SBO:0000176" id="R_MAR00598" name="1,2-diacyl-sn-glycerol 3-phosphate phosphohydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -236388,7 +236425,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00598">
+            <rdf:Description rdf:about="#R_MAR00598">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.3.4"/>
@@ -236400,12 +236437,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02729c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02729c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00236c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00236c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -236418,7 +236455,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00599" sboTerm="SBO:0000176" id="MAR00599" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00599" sboTerm="SBO:0000176" id="R_MAR00599" name="1,2-diacyl-sn-glycerol 3-phosphate phosphohydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -236427,7 +236464,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00599">
+            <rdf:Description rdf:about="#R_MAR00599">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.3.4"/>
@@ -236439,12 +236476,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02731c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02731c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00238c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00238c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -236457,7 +236494,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00600" sboTerm="SBO:0000176" id="MAR00600" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00600" sboTerm="SBO:0000176" id="R_MAR00600" name="1,2-diacyl-sn-glycerol 3-phosphate phosphohydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -236466,7 +236503,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00600">
+            <rdf:Description rdf:about="#R_MAR00600">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.3.4"/>
@@ -236478,12 +236515,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02730c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02730c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00237c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00237c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -236496,7 +236533,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00601" sboTerm="SBO:0000176" id="MAR00601" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00601" sboTerm="SBO:0000176" id="R_MAR00601" name="1,2-diacyl-sn-glycerol 3-phosphate phosphohydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -236505,7 +236542,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00601">
+            <rdf:Description rdf:about="#R_MAR00601">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.3.4"/>
@@ -236517,12 +236554,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02732c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02732c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00239c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00239c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -236535,7 +236572,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00602" sboTerm="SBO:0000176" id="MAR00602" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00602" sboTerm="SBO:0000176" id="R_MAR00602" name="1,2-diacyl-sn-glycerol 3-phosphate phosphohydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -236544,7 +236581,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00602">
+            <rdf:Description rdf:about="#R_MAR00602">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.3.4"/>
@@ -236556,12 +236593,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02726c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02726c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00233c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00233c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -236574,40 +236611,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00607" sboTerm="SBO:0000176" id="MAR00607" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
-        <notes>
-          <body xmlns="http://www.w3.org/1999/xhtml">
-            <p>Confidence Level: 0</p>
-            <p>AUTHORS: PMID:1330695;PMID:9370329</p>
-          </body>
-        </notes>
-        <annotation>
-          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00607">
-              <bqbiol:is>
-                <rdf:Bag>
-                  <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.7.41"/>
-                  <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R01799"/>
-                  <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_0607"/>
-                </rdf:Bag>
-              </bqbiol:is>
-            </rdf:Description>
-          </rdf:RDF>
-        </annotation>
-        <listOfReactants>
-          <speciesReference species="MAM01427c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759c" stoichiometry="1" constant="true"/>
-        </listOfReactants>
-        <listOfProducts>
-          <speciesReference species="MAM01623c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02730c" stoichiometry="1" constant="true"/>
-        </listOfProducts>
-        <fbc:geneProductAssociation>
-          <fbc:geneProductRef fbc:geneProduct="Cds"/>
-        </fbc:geneProductAssociation>
-      </reaction>
-      <reaction metaid="MAR00610" sboTerm="SBO:0000176" id="MAR00610" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00610" sboTerm="SBO:0000176" id="R_MAR00610" name="CDP-diacylglycerol:myo-inositol 3-phosphatidyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -236616,7 +236620,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00610">
+            <rdf:Description rdf:about="#R_MAR00610">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.8.11"/>
@@ -236630,19 +236634,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01427c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02171c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01427c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02171c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01590c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02750c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01590c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02750c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Pis"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00613" sboTerm="SBO:0000176" id="MAR00613" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00613" sboTerm="SBO:0000176" id="R_MAR00613" name="CDP-diacylglycerol:myo-inositol 3-phosphatidyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -236651,7 +236655,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00613">
+            <rdf:Description rdf:about="#R_MAR00613">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.8.11"/>
@@ -236663,19 +236667,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01427r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02171r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01427r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02171r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01590r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02750r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01590r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02750r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Pis"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00614" sboTerm="SBO:0000176" id="MAR00614" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00614" sboTerm="SBO:0000176" id="R_MAR00614" name="CDPethanolamine:1,2-diacylglycerol ethanolaminephosphotransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -236684,7 +236688,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00614">
+            <rdf:Description rdf:about="#R_MAR00614">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.8.1"/>
@@ -236699,13 +236703,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00236c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01428c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00236c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01428c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01590c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02685c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01590c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02685c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -236714,7 +236718,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00615" sboTerm="SBO:0000176" id="MAR00615" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00615" sboTerm="SBO:0000176" id="R_MAR00615" name="CDPethanolamine:1,2-diacylglycerol ethanolaminephosphotransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -236723,7 +236727,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00615">
+            <rdf:Description rdf:about="#R_MAR00615">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.8.1"/>
@@ -236737,13 +236741,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00238c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01428c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00238c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01428c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01590c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02697c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01590c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02697c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -236752,7 +236756,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00616" sboTerm="SBO:0000176" id="MAR00616" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00616" sboTerm="SBO:0000176" id="R_MAR00616" name="Phsophatidyl-L-serine carboxy-lyase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -236761,7 +236765,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00616">
+            <rdf:Description rdf:about="#R_MAR00616">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.1.1.65"/>
@@ -236773,18 +236777,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01596c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02697c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01596c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02697c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02808c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02808c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Pisd"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00625" sboTerm="SBO:0000176" id="MAR00625" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00625" sboTerm="SBO:0000176" id="R_MAR00625" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -236793,7 +236797,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00625">
+            <rdf:Description rdf:about="#R_MAR00625">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.8.2"/>
@@ -236807,19 +236811,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00235c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01425c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00235c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01425c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01590c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02684c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01590c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02684c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="bbc"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00627" sboTerm="SBO:0000176" id="MAR00627" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00627" sboTerm="SBO:0000176" id="R_MAR00627" name="Phsophatidyl-L-serine carboxy-lyase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -236827,7 +236831,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00627">
+            <rdf:Description rdf:about="#R_MAR00627">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.1.1.65"/>
@@ -236839,18 +236843,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02808c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02808c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01596c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02685c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01596c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02685c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Pisd"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00629" sboTerm="SBO:0000176" id="MAR00629" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00629" sboTerm="SBO:0000176" id="R_MAR00629" name="phosphatidylcholine phosphatidohydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -236859,7 +236863,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00629">
+            <rdf:Description rdf:about="#R_MAR00629">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.4.4"/>
@@ -236872,13 +236876,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02684c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02684c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01513c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02728c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01513c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02728c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -236888,7 +236892,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00630" sboTerm="SBO:0000176" id="MAR00630" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00630" sboTerm="SBO:0000176" id="R_MAR00630" name="phosphatidylcholine 2-acylhydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -236897,7 +236901,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00630">
+            <rdf:Description rdf:about="#R_MAR00630">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.4"/>
@@ -236909,16 +236913,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02684c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02684c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00656c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM10005c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00656c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM10005c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR00632" sboTerm="SBO:0000176" id="MAR00632" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00632" sboTerm="SBO:0000176" id="R_MAR00632" name="Acyl-CoA:1-acyl-sn-glycero-3-phosphocholine O-acyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -236926,7 +236930,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00632">
+            <rdf:Description rdf:about="#R_MAR00632">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.23"/>
@@ -236939,12 +236943,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00656c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM10007c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00656c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM10007c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02684c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02684c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -236953,7 +236957,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00633" sboTerm="SBO:0000176" id="MAR00633" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00633" sboTerm="SBO:0000176" id="R_MAR00633" name="1-Acyl-sn-glycero-3-phosphocholine acylhydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -236961,7 +236965,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00633">
+            <rdf:Description rdf:about="#R_MAR00633">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.5"/>
@@ -236973,13 +236977,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00656c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00656c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02912c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM10005c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02912c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM10005c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -236995,7 +236999,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00634" sboTerm="SBO:0000176" id="MAR00634" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00634" sboTerm="SBO:0000176" id="R_MAR00634" name="Phosphatidylcholine:sterol O-acyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -237004,7 +237008,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00634">
+            <rdf:Description rdf:about="#R_MAR00634">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.43"/>
@@ -237019,18 +237023,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01450c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02684c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02684c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00656c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01451c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00656c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01451c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG18858"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00635" sboTerm="SBO:0000176" id="MAR00635" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00635" sboTerm="SBO:0000176" id="R_MAR00635" name="sn-Glycero-3-phosphocholine glycerophosphohydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -237038,7 +237042,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00635">
+            <rdf:Description rdf:about="#R_MAR00635">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.4.2"/>
@@ -237050,19 +237054,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02912c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02912c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01513c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02914c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01513c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02914c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG2818"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00636" sboTerm="SBO:0000176" id="MAR00636" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00636" sboTerm="SBO:0000176" id="R_MAR00636" name="ATP:choline phosphotransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -237071,7 +237075,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00636">
+            <rdf:Description rdf:about="#R_MAR00636">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.1.32"/>
@@ -237087,19 +237091,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01513c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01513c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02738c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02738c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG2201"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00638" sboTerm="SBO:0000176" id="MAR00638" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00638" sboTerm="SBO:0000176" id="R_MAR00638" name="CTP:choline-phosphate cytidylyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -237108,7 +237112,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00638">
+            <rdf:Description rdf:about="#R_MAR00638">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.7.15"/>
@@ -237124,19 +237128,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01623c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02738c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01623c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02738c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01425c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01425c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Pcyt2"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00640" sboTerm="SBO:0000176" id="MAR00640" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00640" sboTerm="SBO:0000176" id="R_MAR00640" name="Acetyl-CoA:choline O-acetyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -237144,7 +237148,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00640">
+            <rdf:Description rdf:about="#R_MAR00640">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.6"/>
@@ -237159,18 +237163,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01261c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01513c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01513c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01260c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01260c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="ChAT"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00641" sboTerm="SBO:0000176" id="MAR00641" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00641" sboTerm="SBO:0000176" id="R_MAR00641" name="Acetylcholine aectylhydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -237178,7 +237182,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00641">
+            <rdf:Description rdf:about="#R_MAR00641">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.7"/>
@@ -237193,19 +237197,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01260c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01260c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01252c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01513c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01252c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01513c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Ace"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00642" sboTerm="SBO:0000176" id="MAR00642" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00642" sboTerm="SBO:0000176" id="R_MAR00642" name="phosphatidylethanolamine phosphatidohydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -237214,7 +237218,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00642">
+            <rdf:Description rdf:about="#R_MAR00642">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.4.4"/>
@@ -237226,13 +237230,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02685c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02685c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01797c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02729c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01797c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02729c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -237241,7 +237245,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00643" sboTerm="SBO:0000176" id="MAR00643" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00643" sboTerm="SBO:0000176" id="R_MAR00643" name="phosphatidylethanolamine 2-acylhydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -237249,7 +237253,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00643">
+            <rdf:Description rdf:about="#R_MAR00643">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.4"/>
@@ -237261,16 +237265,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02685c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02685c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00511c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM10005c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00511c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM10005c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR00644" sboTerm="SBO:0000176" id="MAR00644" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00644" sboTerm="SBO:0000176" id="R_MAR00644" name="Acyl-CoA:1-acyl-sn-glycero-3-phosphoethanolamine O-acyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -237278,7 +237282,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00644">
+            <rdf:Description rdf:about="#R_MAR00644">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.23"/>
@@ -237291,12 +237295,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00511c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM10007c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00511c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM10007c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02685c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02685c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -237305,7 +237309,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00645" sboTerm="SBO:0000176" id="MAR00645" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00645" sboTerm="SBO:0000176" id="R_MAR00645" name="1-Acyl-sn-glycero-3-phosphoethanolamine aldehydohydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -237313,7 +237317,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00645">
+            <rdf:Description rdf:about="#R_MAR00645">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.5"/>
@@ -237325,13 +237329,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00511c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00511c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02913c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM10005c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02913c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM10005c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -237347,7 +237351,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00646" sboTerm="SBO:0000176" id="MAR00646" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00646" sboTerm="SBO:0000176" id="R_MAR00646" name="sn-Glycero-3-phosphoethanolamine glycerophosphohydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -237355,7 +237359,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00646">
+            <rdf:Description rdf:about="#R_MAR00646">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.4.2"/>
@@ -237368,19 +237372,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02913c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02913c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01797c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02914c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01797c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02914c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG2818"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00647" sboTerm="SBO:0000176" id="MAR00647" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00647" sboTerm="SBO:0000176" id="R_MAR00647" name="ethanolamine ammonia-lyase (acetaldehyde-forming)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -237388,7 +237392,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00647">
+            <rdf:Description rdf:about="#R_MAR00647">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.3.1.7"/>
@@ -237401,15 +237405,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01797c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01797c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01249c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02578c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01249c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02578c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR00648" sboTerm="SBO:0000176" id="MAR00648" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00648" sboTerm="SBO:0000176" id="R_MAR00648" name="ATP:ethanolamine O-phosphotransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -237418,7 +237422,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00648">
+            <rdf:Description rdf:about="#R_MAR00648">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.1.82"/>
@@ -237432,13 +237436,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01797c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01797c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01798c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01798c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -237447,7 +237451,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00649" sboTerm="SBO:0000176" id="MAR00649" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00649" sboTerm="SBO:0000176" id="R_MAR00649" name="Phosphoethanolamine phosphohydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -237456,7 +237460,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00649">
+            <rdf:Description rdf:about="#R_MAR00649">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.3.75"/>
@@ -237470,18 +237474,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01798c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01798c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01797c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01797c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG12237"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00651" sboTerm="SBO:0000176" id="MAR00651" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00651" sboTerm="SBO:0000176" id="R_MAR00651" name="CTP:ethanolamine-phosphate cytidylyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -237490,7 +237494,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00651">
+            <rdf:Description rdf:about="#R_MAR00651">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.7.14"/>
@@ -237506,19 +237510,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01623c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01798c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01623c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01798c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01428c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01428c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Pect"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00660" sboTerm="SBO:0000176" id="MAR00660" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00660" sboTerm="SBO:0000176" id="R_MAR00660" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -237527,7 +237531,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00660">
+            <rdf:Description rdf:about="#R_MAR00660">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.4.4"/>
@@ -237539,13 +237543,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02808c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02808c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02731c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02896c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02731c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02896c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -237554,7 +237558,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04627" sboTerm="SBO:0000176" id="MAR04627" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04627" sboTerm="SBO:0000176" id="R_MAR04627" name="S-Adenosyl-L-methionine:ethanolamine-phosphate N-methyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -237563,7 +237567,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04627">
+            <rdf:Description rdf:about="#R_MAR04627">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.1.1.103"/>
@@ -237576,13 +237580,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01798c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02877c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01798c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02877c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02600c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02871c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02600c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02871c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -237591,7 +237595,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04838" sboTerm="SBO:0000176" id="MAR04838" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04838" sboTerm="SBO:0000176" id="R_MAR04838" name="S-Adenosyl-L-methionine:methylethanolamine phosphate N-methyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -237600,7 +237604,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04838">
+            <rdf:Description rdf:about="#R_MAR04838">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.1.1.103"/>
@@ -237613,13 +237617,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02600c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02877c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02600c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02877c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02739c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02871c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02739c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02871c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -237628,7 +237632,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04839" sboTerm="SBO:0000176" id="MAR04839" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04839" sboTerm="SBO:0000176" id="R_MAR04839" name="S-Adenosyl-L-methionine:phosphodimethylethanolamine N-methyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -237637,7 +237641,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04839">
+            <rdf:Description rdf:about="#R_MAR04839">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.1.1.103"/>
@@ -237650,12 +237654,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02739c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02877c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02739c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02877c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02738c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02871c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02738c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02871c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -237664,7 +237668,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07591" sboTerm="SBO:0000176" id="MAR07591" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07591" sboTerm="SBO:0000176" id="R_MAR07591" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -237673,7 +237677,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07591">
+            <rdf:Description rdf:about="#R_MAR07591">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.2"/>
@@ -237684,19 +237688,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM10006c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM10006c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01278c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01278c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG2767"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07594" sboTerm="SBO:0000176" id="MAR07594" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07594" sboTerm="SBO:0000176" id="R_MAR07594" name="1-Acyl-glycerone-3-phosphate:long-chain-alcohol O-3-phospho-2-oxopropanyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -237704,7 +237708,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07594">
+            <rdf:Description rdf:about="#R_MAR07594">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.5.1.26"/>
@@ -237719,19 +237723,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01278x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03417x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01278x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03417x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01311x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM10005x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01311x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM10005x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Agps"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07597" sboTerm="SBO:0000176" id="MAR07597" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07597" sboTerm="SBO:0000176" id="R_MAR07597" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -237739,7 +237743,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07597">
+            <rdf:Description rdf:about="#R_MAR07597">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/AGLPT"/>
@@ -237751,18 +237755,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01311c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM10005c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01311c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM10005c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00628c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00628c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07601" sboTerm="SBO:0000176" id="MAR07601" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07601" sboTerm="SBO:0000176" id="R_MAR07601" name="plasmanylethanolamine,ferrocytochrome b5:oxygen oxidoreductase (plasmenylethanolamine-forming)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -237770,7 +237774,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07601">
+            <rdf:Description rdf:about="#R_MAR07601">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.99.19"/>
@@ -237785,18 +237789,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00515c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00515c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02629c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02629c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07611" sboTerm="SBO:0000176" id="MAR07611" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07611" sboTerm="SBO:0000176" id="R_MAR07611" name="1-Alkyl-2-acetyl-sn-glycero-3-phosphocholine acetohydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -237804,7 +237808,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07611">
+            <rdf:Description rdf:about="#R_MAR07611">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.47"/>
@@ -237819,16 +237823,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00626c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00626c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00549c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01252c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00549c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01252c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07613" sboTerm="SBO:0000176" id="MAR07613" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07613" sboTerm="SBO:0000176" id="R_MAR07613" name="Acetyl-CoA:1-alkyl-sn-glycero-3-phosphocholine 2-O-acetyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -237836,7 +237840,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07613">
+            <rdf:Description rdf:about="#R_MAR07613">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.67"/>
@@ -237851,18 +237855,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00549c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01261c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00549c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00626c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00626c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="LPCAT"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08362" sboTerm="SBO:0000176" id="MAR08362" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08362" sboTerm="SBO:0000176" id="R_MAR08362" name="Acetyl-CoA:choline O-acetyltransferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -237870,7 +237874,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08362">
+            <rdf:Description rdf:about="#R_MAR08362">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.6"/>
@@ -237886,18 +237890,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01260n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01260n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597n" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01513n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01513n" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="ChAT"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08421" sboTerm="SBO:0000176" id="MAR08421" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08421" sboTerm="SBO:0000176" id="R_MAR08421" name="Acetylcholine aectylhydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -237905,7 +237909,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08421">
+            <rdf:Description rdf:about="#R_MAR08421">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.7"/>
@@ -237922,19 +237926,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01260e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01260e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01252e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01513e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01252e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01513e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Ace"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08424" sboTerm="SBO:0000176" id="MAR08424" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08424" sboTerm="SBO:0000176" id="R_MAR08424" name="Phosphocholine phosphohydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -237942,7 +237946,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08424">
+            <rdf:Description rdf:about="#R_MAR08424">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.3.75"/>
@@ -237958,18 +237962,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02738c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02738c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01513c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01513c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG12237"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08518" sboTerm="SBO:0000176" id="MAR08518" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08518" sboTerm="SBO:0000176" id="R_MAR08518" name="1-Alkyl-2-acetyl-sn-glycero-3-phosphocholine acetohydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -237977,7 +237981,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08518">
+            <rdf:Description rdf:about="#R_MAR08518">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.47"/>
@@ -237991,16 +237995,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00626c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00626c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00516c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01252c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00516c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01252c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08521" sboTerm="SBO:0000176" id="MAR08521" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08521" sboTerm="SBO:0000176" id="R_MAR08521" name="Acetyl-CoA:1-alkyl-sn-glycero-3-phosphocholine 2-O-acetyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -238008,7 +238012,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08521">
+            <rdf:Description rdf:about="#R_MAR08521">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PAFS"/>
@@ -238021,18 +238025,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00516c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01261c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00516c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00626c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00626c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="LPCAT"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08522" sboTerm="SBO:0000176" id="MAR08522" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08522" sboTerm="SBO:0000176" id="R_MAR08522" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -238040,7 +238044,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08522">
+            <rdf:Description rdf:about="#R_MAR08522">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PLA2"/>
@@ -238051,16 +238055,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00560c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00560c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00516c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM10005c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00516c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM10005c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08523" sboTerm="SBO:0000176" id="MAR08523" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08523" sboTerm="SBO:0000176" id="R_MAR08523" name="phosphatidylcholine phosphatidohydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -238068,7 +238072,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08523">
+            <rdf:Description rdf:about="#R_MAR08523">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.4.4"/>
@@ -238082,13 +238086,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02684g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02684g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01513g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02728g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01513g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02728g" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -238097,7 +238101,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08525" sboTerm="SBO:0000176" id="MAR08525" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08525" sboTerm="SBO:0000176" id="R_MAR08525" name="phosphatidylcholine phosphatidohydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -238105,7 +238109,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08525">
+            <rdf:Description rdf:about="#R_MAR08525">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.4.4"/>
@@ -238119,13 +238123,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02684r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02684r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01513r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02728r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01513r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02728r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -238134,7 +238138,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00816" sboTerm="SBO:0000176" id="MAR00816" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00816" sboTerm="SBO:0000176" id="R_MAR00816" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -238142,7 +238146,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00816">
+            <rdf:Description rdf:about="#R_MAR00816">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.62"/>
@@ -238155,19 +238159,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01905c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03107c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01905c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03107c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01904c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01904c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG8673"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00819" sboTerm="SBO:0000176" id="MAR00819" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00819" sboTerm="SBO:0000176" id="R_MAR00819" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -238175,7 +238179,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00819">
+            <rdf:Description rdf:about="#R_MAR00819">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.2.1.23"/>
@@ -238188,12 +238192,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01904c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01904c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01905c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01910c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01905c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01910c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:and>
@@ -238202,7 +238206,7 @@
           </fbc:and>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00821" sboTerm="SBO:0000176" id="MAR00821" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00821" sboTerm="SBO:0000176" id="R_MAR00821" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -238210,7 +238214,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00821">
+            <rdf:Description rdf:about="#R_MAR00821">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.2.1.52"/>
@@ -238223,12 +238227,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01905c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01905c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02328c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02525c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02328c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02525c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -238239,7 +238243,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00823" sboTerm="SBO:0000176" id="MAR00823" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00823" sboTerm="SBO:0000176" id="R_MAR00823" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -238247,7 +238251,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00823">
+            <rdf:Description rdf:about="#R_MAR00823">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.99.-"/>
@@ -238261,19 +238265,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01592c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02010c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01592c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02010c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01590c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01941c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01590c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01941c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="SiaT"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00828" sboTerm="SBO:0000176" id="MAR00828" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00828" sboTerm="SBO:0000176" id="R_MAR00828" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -238281,7 +238285,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00828">
+            <rdf:Description rdf:about="#R_MAR00828">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.2.1.52"/>
@@ -238294,12 +238298,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02011c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02011c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02015c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02525c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02015c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02525c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -238310,7 +238314,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00829" sboTerm="SBO:0000176" id="MAR00829" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00829" sboTerm="SBO:0000176" id="R_MAR00829" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -238318,7 +238322,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00829">
+            <rdf:Description rdf:about="#R_MAR00829">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.62"/>
@@ -238331,19 +238335,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02011c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03107c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02011c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03107c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02008c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02008c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG8673"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00830" sboTerm="SBO:0000176" id="MAR00830" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00830" sboTerm="SBO:0000176" id="R_MAR00830" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -238351,7 +238355,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00830">
+            <rdf:Description rdf:about="#R_MAR00830">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.2.1.23"/>
@@ -238366,12 +238370,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02008c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02008c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01910c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02011c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01910c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02011c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:and>
@@ -238380,7 +238384,7 @@
           </fbc:and>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00840" sboTerm="SBO:0000176" id="MAR00840" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00840" sboTerm="SBO:0000176" id="R_MAR00840" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -238388,7 +238392,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00840">
+            <rdf:Description rdf:about="#R_MAR00840">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.99.-"/>
@@ -238401,19 +238405,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01592c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01941c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01592c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01941c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01590c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02029c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01590c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02029c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="SiaT"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00843" sboTerm="SBO:0000176" id="MAR00843" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00843" sboTerm="SBO:0000176" id="R_MAR00843" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -238421,7 +238425,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00843">
+            <rdf:Description rdf:about="#R_MAR00843">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.62"/>
@@ -238434,19 +238438,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01946c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03107c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01946c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03107c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01943c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01943c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG8673"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00848" sboTerm="SBO:0000176" id="MAR00848" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00848" sboTerm="SBO:0000176" id="R_MAR00848" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -238454,7 +238458,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00848">
+            <rdf:Description rdf:about="#R_MAR00848">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.99.-"/>
@@ -238467,19 +238471,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01592c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02030c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01592c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02030c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01590c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02024c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01590c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02024c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="SiaT"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00857" sboTerm="SBO:0000176" id="MAR00857" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00857" sboTerm="SBO:0000176" id="R_MAR00857" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -238487,7 +238491,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00857">
+            <rdf:Description rdf:about="#R_MAR00857">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.62"/>
@@ -238500,19 +238504,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02032c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03107c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02032c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03107c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02031c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02031c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG8673"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00801" sboTerm="SBO:0000176" id="MAR00801" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00801" sboTerm="SBO:0000176" id="R_MAR00801" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -238520,7 +238524,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00801">
+            <rdf:Description rdf:about="#R_MAR00801">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.228"/>
@@ -238533,16 +238537,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02328c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03107c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02328c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03107c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01960c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01960c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR00803" sboTerm="SBO:0000176" id="MAR00803" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00803" sboTerm="SBO:0000176" id="R_MAR00803" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -238550,7 +238554,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00803">
+            <rdf:Description rdf:about="#R_MAR00803">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.2.1.22"/>
@@ -238563,18 +238567,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01960c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01960c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01910c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02328c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01910c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02328c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG7997"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00805" sboTerm="SBO:0000176" id="MAR00805" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00805" sboTerm="SBO:0000176" id="R_MAR00805" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -238582,7 +238586,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00805">
+            <rdf:Description rdf:about="#R_MAR00805">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.79"/>
@@ -238595,19 +238599,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01960c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03110c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01960c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03110c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01959c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01959c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG30036"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00806" sboTerm="SBO:0000176" id="MAR00806" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00806" sboTerm="SBO:0000176" id="R_MAR00806" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -238615,7 +238619,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00806">
+            <rdf:Description rdf:about="#R_MAR00806">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.79"/>
@@ -238628,19 +238632,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01960l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03110l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01960l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03110l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01959l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01959l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG30036"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00807" sboTerm="SBO:0000176" id="MAR00807" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00807" sboTerm="SBO:0000176" id="R_MAR00807" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -238648,7 +238652,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00807">
+            <rdf:Description rdf:about="#R_MAR00807">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.2.1.52"/>
@@ -238661,12 +238665,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01959c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01959c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01960c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02525c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01960c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02525c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -238677,7 +238681,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00809" sboTerm="SBO:0000176" id="MAR00809" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00809" sboTerm="SBO:0000176" id="R_MAR00809" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -238685,7 +238689,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00809">
+            <rdf:Description rdf:about="#R_MAR00809">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.-"/>
@@ -238698,19 +238702,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01959c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03107c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01959c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03107c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01912c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01912c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG30036"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00811" sboTerm="SBO:0000176" id="MAR00811" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00811" sboTerm="SBO:0000176" id="R_MAR00811" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -238718,7 +238722,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00811">
+            <rdf:Description rdf:about="#R_MAR00811">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.2.1.49"/>
@@ -238731,18 +238735,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02197c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02197c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01959c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02525c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01959c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02525c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG7997"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00859" sboTerm="SBO:0000176" id="MAR00859" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00859" sboTerm="SBO:0000176" id="R_MAR00859" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -238750,7 +238754,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00859">
+            <rdf:Description rdf:about="#R_MAR00859">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.206"/>
@@ -238763,19 +238767,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02328c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03111c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02328c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03111c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02346c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02346c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="brn"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00860" sboTerm="SBO:0000176" id="MAR00860" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00860" sboTerm="SBO:0000176" id="R_MAR00860" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -238783,7 +238787,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00860">
+            <rdf:Description rdf:about="#R_MAR00860">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.86"/>
@@ -238796,13 +238800,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02346c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03107c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02346c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03107c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02347c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02347c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -238812,7 +238816,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00862" sboTerm="SBO:0000176" id="MAR00862" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00862" sboTerm="SBO:0000176" id="R_MAR00862" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -238820,7 +238824,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00862">
+            <rdf:Description rdf:about="#R_MAR00862">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.65"/>
@@ -238833,19 +238837,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00808c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01950c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00808c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01950c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01849c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01948c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01849c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01948c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="FucTA"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00863" sboTerm="SBO:0000176" id="MAR00863" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00863" sboTerm="SBO:0000176" id="R_MAR00863" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -238853,7 +238857,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00863">
+            <rdf:Description rdf:about="#R_MAR00863">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.65"/>
@@ -238866,19 +238870,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01950c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02347c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01950c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02347c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01860c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01948c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01860c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01948c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="FucTA"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00870" sboTerm="SBO:0000176" id="MAR00870" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00870" sboTerm="SBO:0000176" id="R_MAR00870" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -238886,7 +238890,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00870">
+            <rdf:Description rdf:about="#R_MAR00870">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.65"/>
@@ -238899,19 +238903,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01950c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03090c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01950c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03090c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01850c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01948c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01850c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01948c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="FucTA"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00871" sboTerm="SBO:0000176" id="MAR00871" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00871" sboTerm="SBO:0000176" id="R_MAR00871" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -238919,7 +238923,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00871">
+            <rdf:Description rdf:about="#R_MAR00871">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.65"/>
@@ -238932,19 +238936,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01950c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02195c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01950c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02195c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01948c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02194c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01948c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02194c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="FucTA"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00873" sboTerm="SBO:0000176" id="MAR00873" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00873" sboTerm="SBO:0000176" id="R_MAR00873" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -238952,7 +238956,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00873">
+            <rdf:Description rdf:about="#R_MAR00873">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.65"/>
@@ -238965,19 +238969,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01874c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01948c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01874c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01948c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01950c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03091c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01950c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03091c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="FucTA"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00875" sboTerm="SBO:0000176" id="MAR00875" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00875" sboTerm="SBO:0000176" id="R_MAR00875" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -238985,7 +238989,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00875">
+            <rdf:Description rdf:about="#R_MAR00875">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.-"/>
@@ -238998,16 +239002,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02346c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03107c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02346c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03107c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02683c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02683c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR00878" sboTerm="SBO:0000176" id="MAR00878" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00878" sboTerm="SBO:0000176" id="R_MAR00878" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -239015,7 +239019,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00878">
+            <rdf:Description rdf:about="#R_MAR00878">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.152"/>
@@ -239029,19 +239033,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01950c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02904c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01950c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02904c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01948c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02199c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01948c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02199c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="FucTA"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00882" sboTerm="SBO:0000176" id="MAR00882" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00882" sboTerm="SBO:0000176" id="R_MAR00882" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -239049,7 +239053,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00882">
+            <rdf:Description rdf:about="#R_MAR00882">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.152"/>
@@ -239063,19 +239067,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01950c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02196c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01950c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02196c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01948c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02162c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01948c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02162c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="FucTA"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00885" sboTerm="SBO:0000176" id="MAR00885" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00885" sboTerm="SBO:0000176" id="R_MAR00885" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -239083,7 +239087,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00885">
+            <rdf:Description rdf:about="#R_MAR00885">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.-"/>
@@ -239096,16 +239100,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03093c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03107c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03093c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03107c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01876c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01876c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR00888" sboTerm="SBO:0000176" id="MAR00888" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00888" sboTerm="SBO:0000176" id="R_MAR00888" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -239113,7 +239117,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00888">
+            <rdf:Description rdf:about="#R_MAR00888">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.152"/>
@@ -239128,19 +239132,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01950c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02683c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01950c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02683c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01948c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02163c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01948c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02163c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="FucTA"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00889" sboTerm="SBO:0000176" id="MAR00889" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00889" sboTerm="SBO:0000176" id="R_MAR00889" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -239148,7 +239152,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00889">
+            <rdf:Description rdf:about="#R_MAR00889">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.149"/>
@@ -239162,13 +239166,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02683c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03111c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02683c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03111c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02593c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02593c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -239177,7 +239181,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00890" sboTerm="SBO:0000176" id="MAR00890" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00890" sboTerm="SBO:0000176" id="R_MAR00890" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -239185,7 +239189,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00890">
+            <rdf:Description rdf:about="#R_MAR00890">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.-"/>
@@ -239198,16 +239202,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02593c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03107c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02593c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03107c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02594c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02594c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR00891" sboTerm="SBO:0000176" id="MAR00891" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00891" sboTerm="SBO:0000176" id="R_MAR00891" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -239215,7 +239219,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00891">
+            <rdf:Description rdf:about="#R_MAR00891">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.149"/>
@@ -239229,13 +239233,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02594c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03111c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02594c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03111c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02595c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02595c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -239244,7 +239248,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00892" sboTerm="SBO:0000176" id="MAR00892" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00892" sboTerm="SBO:0000176" id="R_MAR00892" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -239252,7 +239256,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00892">
+            <rdf:Description rdf:about="#R_MAR00892">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.-"/>
@@ -239265,19 +239269,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02595c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03107c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02595c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03107c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02596c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02596c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="brn"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00893" sboTerm="SBO:0000176" id="MAR00893" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00893" sboTerm="SBO:0000176" id="R_MAR00893" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -239285,7 +239289,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00893">
+            <rdf:Description rdf:about="#R_MAR00893">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.152"/>
@@ -239300,19 +239304,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01950c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02596c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01950c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02596c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01885c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01948c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01885c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01948c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="FucTA"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00894" sboTerm="SBO:0000176" id="MAR00894" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00894" sboTerm="SBO:0000176" id="R_MAR00894" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -239320,7 +239324,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00894">
+            <rdf:Description rdf:about="#R_MAR00894">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.152"/>
@@ -239335,19 +239339,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01885c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01950c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01885c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01950c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01886c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01948c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01886c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01948c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="FucTA"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00895" sboTerm="SBO:0000176" id="MAR00895" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00895" sboTerm="SBO:0000176" id="R_MAR00895" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -239355,7 +239359,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00895">
+            <rdf:Description rdf:about="#R_MAR00895">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.152"/>
@@ -239370,19 +239374,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01886c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01950c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01886c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01950c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01887c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01948c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01887c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01948c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="FucTA"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00896" sboTerm="SBO:0000176" id="MAR00896" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00896" sboTerm="SBO:0000176" id="R_MAR00896" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -239390,7 +239394,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00896">
+            <rdf:Description rdf:about="#R_MAR00896">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.152"/>
@@ -239405,19 +239409,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01950c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02594c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01950c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02594c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01948c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03133c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01948c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03133c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="FucTA"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00897" sboTerm="SBO:0000176" id="MAR00897" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00897" sboTerm="SBO:0000176" id="R_MAR00897" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -239425,7 +239429,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00897">
+            <rdf:Description rdf:about="#R_MAR00897">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.152"/>
@@ -239440,19 +239444,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01950c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03133c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01950c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03133c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01948c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03132c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01948c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03132c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="FucTA"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00899" sboTerm="SBO:0000176" id="MAR00899" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00899" sboTerm="SBO:0000176" id="R_MAR00899" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -239460,7 +239464,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00899">
+            <rdf:Description rdf:about="#R_MAR00899">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.152"/>
@@ -239475,19 +239479,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01950c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03137c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01950c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03137c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01882c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01948c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01882c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01948c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="FucTA"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00900" sboTerm="SBO:0000176" id="MAR00900" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00900" sboTerm="SBO:0000176" id="R_MAR00900" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -239495,7 +239499,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00900">
+            <rdf:Description rdf:about="#R_MAR00900">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.152"/>
@@ -239510,19 +239514,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01882c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01950c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01882c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01950c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01883c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01948c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01883c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01948c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="FucTA"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00903" sboTerm="SBO:0000176" id="MAR00903" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00903" sboTerm="SBO:0000176" id="R_MAR00903" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -239530,7 +239534,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00903">
+            <rdf:Description rdf:about="#R_MAR00903">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.-"/>
@@ -239543,16 +239547,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01877c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03107c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01877c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03107c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01878c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01878c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR00907" sboTerm="SBO:0000176" id="MAR00907" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00907" sboTerm="SBO:0000176" id="R_MAR00907" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -239560,7 +239564,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00907">
+            <rdf:Description rdf:about="#R_MAR00907">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.-"/>
@@ -239573,16 +239577,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01880c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03107c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01880c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03107c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02186c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02186c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR00911" sboTerm="SBO:0000176" id="MAR00911" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00911" sboTerm="SBO:0000176" id="R_MAR00911" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -239590,7 +239594,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00911">
+            <rdf:Description rdf:about="#R_MAR00911">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.152"/>
@@ -239605,19 +239609,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01950c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02594c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01950c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02594c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01948c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02164c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01948c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02164c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="FucTA"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00912" sboTerm="SBO:0000176" id="MAR00912" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00912" sboTerm="SBO:0000176" id="R_MAR00912" name="UDP-alpha-D-galactose:sphingosine 1-beta-galactosyltransferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -239625,7 +239629,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00912">
+            <rdf:Description rdf:about="#R_MAR00912">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.23"/>
@@ -239638,16 +239642,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02929c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03107c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02929c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03107c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02810c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02810c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR00787" sboTerm="SBO:0000176" id="MAR00787" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00787" sboTerm="SBO:0000176" id="R_MAR00787" name="D-Glucosyl-N-acylsphingosine glucohydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -239655,7 +239659,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00787">
+            <rdf:Description rdf:about="#R_MAR00787">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.2.1.45"/>
@@ -239669,12 +239673,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01972l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01972l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01430l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01965l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01430l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01965l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -239684,7 +239688,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00797" sboTerm="SBO:0000176" id="MAR00797" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00797" sboTerm="SBO:0000176" id="R_MAR00797" name="Sphingomyelin cholinephosphohydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -239692,7 +239696,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00797">
+            <rdf:Description rdf:about="#R_MAR00797">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.4.12"/>
@@ -239706,13 +239710,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02908l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02908l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01430l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02738l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01430l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02738l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -239722,7 +239726,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00804" sboTerm="SBO:0000176" id="MAR00804" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00804" sboTerm="SBO:0000176" id="R_MAR00804" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -239730,7 +239734,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00804">
+            <rdf:Description rdf:about="#R_MAR00804">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.2.1.52"/>
@@ -239744,12 +239748,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01960l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01960l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01910l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02328l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01910l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02328l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -239760,7 +239764,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00808" sboTerm="SBO:0000176" id="MAR00808" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00808" sboTerm="SBO:0000176" id="R_MAR00808" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -239768,7 +239772,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00808">
+            <rdf:Description rdf:about="#R_MAR00808">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.2.1.52"/>
@@ -239782,12 +239786,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01959l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01959l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01960l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02525l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01960l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02525l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -239798,7 +239802,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00832" sboTerm="SBO:0000176" id="MAR00832" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00832" sboTerm="SBO:0000176" id="R_MAR00832" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -239806,7 +239810,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00832">
+            <rdf:Description rdf:about="#R_MAR00832">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.2.1.23"/>
@@ -239819,12 +239823,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02008l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02008l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01910l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02011l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01910l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02011l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:and>
@@ -239833,7 +239837,7 @@
           </fbc:and>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00836" sboTerm="SBO:0000176" id="MAR00836" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00836" sboTerm="SBO:0000176" id="R_MAR00836" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -239841,7 +239845,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00836">
+            <rdf:Description rdf:about="#R_MAR00836">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.2.1.52"/>
@@ -239853,13 +239857,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02013l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02013l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02012l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02015l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02525l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02012l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02015l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02525l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -239870,7 +239874,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00919" sboTerm="SBO:0000176" id="MAR00919" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00919" sboTerm="SBO:0000176" id="R_MAR00919" name="UDP-alpha-D-galactose:N-acylsphingosine D-galactosyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -239879,7 +239883,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00919">
+            <rdf:Description rdf:about="#R_MAR00919">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.45"/>
@@ -239892,19 +239896,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01430c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03107c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01430c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03107c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01679c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01679c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Ugt50B3"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00920" sboTerm="SBO:0000176" id="MAR00920" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00920" sboTerm="SBO:0000176" id="R_MAR00920" name="UDP-alpha-D-galactose:N-acylsphingosine D-galactosyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -239913,7 +239917,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00920">
+            <rdf:Description rdf:about="#R_MAR00920">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.45"/>
@@ -239926,19 +239930,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01430g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03107g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01430g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03107g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01679g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01679g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106g" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Ugt50B3"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00921" sboTerm="SBO:0000176" id="MAR00921" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00921" sboTerm="SBO:0000176" id="R_MAR00921" name="UDP-alpha-D-galactose:N-acylsphingosine D-galactosyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -239947,7 +239951,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00921">
+            <rdf:Description rdf:about="#R_MAR00921">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.45"/>
@@ -239960,19 +239964,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01430r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03107r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01430r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03107r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01679r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01679r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Ugt50B3"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00924" sboTerm="SBO:0000176" id="MAR00924" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00924" sboTerm="SBO:0000176" id="R_MAR00924" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -239981,7 +239985,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00924">
+            <rdf:Description rdf:about="#R_MAR00924">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.-"/>
@@ -239994,16 +239998,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01679c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03107c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01679c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03107c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01694c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01694c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR00925" sboTerm="SBO:0000176" id="MAR00925" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00925" sboTerm="SBO:0000176" id="R_MAR00925" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -240012,7 +240016,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00925">
+            <rdf:Description rdf:about="#R_MAR00925">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.-"/>
@@ -240025,16 +240029,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01679g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03107g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01679g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03107g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01694g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01694g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106g" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR00926" sboTerm="SBO:0000176" id="MAR00926" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00926" sboTerm="SBO:0000176" id="R_MAR00926" name="UDP-alpha-D-galactose:beta-D-glucosyl-(1&lt;-&gt;1)-ceramide 4-beta-D-galactosyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -240043,7 +240047,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00926">
+            <rdf:Description rdf:about="#R_MAR00926">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.-"/>
@@ -240056,16 +240060,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01972c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03107c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01972c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03107c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02328c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02328c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08378" sboTerm="SBO:0000176" id="MAR08378" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08378" sboTerm="SBO:0000176" id="R_MAR08378" name="dolichyl-beta-D-mannosyl-phosphate:protein-serine O-D-mannosyltransferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -240073,7 +240077,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08378">
+            <rdf:Description rdf:about="#R_MAR08378">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.109"/>
@@ -240086,13 +240090,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01733c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02645c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01733c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02645c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00205c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01734c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00205c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01734c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -240101,7 +240105,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08379" sboTerm="SBO:0000176" id="MAR08379" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08379" sboTerm="SBO:0000176" id="R_MAR08379" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -240109,7 +240113,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08379">
+            <rdf:Description rdf:about="#R_MAR08379">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.198"/>
@@ -240123,16 +240127,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02750c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03111c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02750c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03111c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02523c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02523c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07185" sboTerm="SBO:0000176" id="MAR07185" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07185" sboTerm="SBO:0000176" id="R_MAR07185" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -240140,7 +240144,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07185">
+            <rdf:Description rdf:about="#R_MAR07185">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.198"/>
@@ -240153,16 +240157,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02750r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03111r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02750r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03111r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02523r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02523r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08380" sboTerm="SBO:0000176" id="MAR08380" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08380" sboTerm="SBO:0000176" id="R_MAR08380" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -240170,7 +240174,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08380">
+            <rdf:Description rdf:about="#R_MAR08380">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.5.1.89"/>
@@ -240184,15 +240188,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02523c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02523c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01143c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01252c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01143c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01252c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07186" sboTerm="SBO:0000176" id="MAR07186" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07186" sboTerm="SBO:0000176" id="R_MAR07186" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -240200,7 +240204,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07186">
+            <rdf:Description rdf:about="#R_MAR07186">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.5.1.89"/>
@@ -240213,15 +240217,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02523r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02523r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01143r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01252r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01143r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01252r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08381" sboTerm="SBO:0000176" id="MAR08381" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08381" sboTerm="SBO:0000176" id="R_MAR08381" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -240229,7 +240233,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08381">
+            <rdf:Description rdf:about="#R_MAR08381">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.-.-"/>
@@ -240243,15 +240247,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01143c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02678c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01143c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02678c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01964c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01964c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07187" sboTerm="SBO:0000176" id="MAR07187" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07187" sboTerm="SBO:0000176" id="R_MAR07187" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -240259,7 +240263,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07187">
+            <rdf:Description rdf:about="#R_MAR07187">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.-.-"/>
@@ -240272,15 +240276,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01143r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02678r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01143r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02678r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01964r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01964r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08383" sboTerm="SBO:0000176" id="MAR08383" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08383" sboTerm="SBO:0000176" id="R_MAR08383" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -240288,7 +240292,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08383">
+            <rdf:Description rdf:about="#R_MAR08383">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.-"/>
@@ -240304,16 +240308,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01734r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01964r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01734r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01964r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01733r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02483r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01733r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02483r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08384" sboTerm="SBO:0000176" id="MAR08384" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08384" sboTerm="SBO:0000176" id="R_MAR08384" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -240321,7 +240325,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08384">
+            <rdf:Description rdf:about="#R_MAR08384">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.-"/>
@@ -240337,16 +240341,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01734r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02483r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01734r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02483r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01733r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02431r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01733r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02431r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08385" sboTerm="SBO:0000176" id="MAR08385" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08385" sboTerm="SBO:0000176" id="R_MAR08385" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -240354,7 +240358,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08385">
+            <rdf:Description rdf:about="#R_MAR08385">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.-"/>
@@ -240370,16 +240374,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01734r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02431r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01734r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02431r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01733r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02433r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01733r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02433r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08387" sboTerm="SBO:0000176" id="MAR08387" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08387" sboTerm="SBO:0000176" id="R_MAR08387" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -240387,7 +240391,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08387">
+            <rdf:Description rdf:about="#R_MAR08387">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.-"/>
@@ -240401,16 +240405,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01734r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01783r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01734r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01783r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01733r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02463r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01733r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02463r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08388" sboTerm="SBO:0000176" id="MAR08388" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08388" sboTerm="SBO:0000176" id="R_MAR08388" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -240418,7 +240422,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08388">
+            <rdf:Description rdf:about="#R_MAR08388">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.-"/>
@@ -240432,16 +240436,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01734r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02463r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01734r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02463r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01733r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02430r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01733r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02430r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08389" sboTerm="SBO:0000176" id="MAR08389" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08389" sboTerm="SBO:0000176" id="R_MAR08389" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -240449,7 +240453,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08389">
+            <rdf:Description rdf:about="#R_MAR08389">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.-"/>
@@ -240463,16 +240467,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01734r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02430r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01734r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02430r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01733r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02432r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01733r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02432r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08390" sboTerm="SBO:0000176" id="MAR08390" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08390" sboTerm="SBO:0000176" id="R_MAR08390" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -240480,7 +240484,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08390">
+            <rdf:Description rdf:about="#R_MAR08390">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.-"/>
@@ -240494,16 +240498,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01734r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01779r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01734r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01779r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01733r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02461r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01733r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02461r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08391" sboTerm="SBO:0000176" id="MAR08391" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08391" sboTerm="SBO:0000176" id="R_MAR08391" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -240511,7 +240515,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08391">
+            <rdf:Description rdf:about="#R_MAR08391">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.-.-"/>
@@ -240524,15 +240528,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02483r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02685r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02483r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02685r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00236r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01783r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00236r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01783r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08392" sboTerm="SBO:0000176" id="MAR08392" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08392" sboTerm="SBO:0000176" id="R_MAR08392" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -240540,7 +240544,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08392">
+            <rdf:Description rdf:about="#R_MAR08392">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.-.-"/>
@@ -240555,15 +240559,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02431r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02685r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02431r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02685r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00236r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02463r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00236r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02463r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08393" sboTerm="SBO:0000176" id="MAR08393" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08393" sboTerm="SBO:0000176" id="R_MAR08393" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -240571,7 +240575,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08393">
+            <rdf:Description rdf:about="#R_MAR08393">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/H4ET3er"/>
@@ -240585,15 +240589,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02433r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02685r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02433r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02685r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00236r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01781r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00236r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01781r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08394" sboTerm="SBO:0000176" id="MAR08394" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08394" sboTerm="SBO:0000176" id="R_MAR08394" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -240601,7 +240605,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08394">
+            <rdf:Description rdf:about="#R_MAR08394">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.-.-"/>
@@ -240614,15 +240618,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02433r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02685r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02433r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02685r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00236r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02430r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00236r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02430r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08395" sboTerm="SBO:0000176" id="MAR08395" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08395" sboTerm="SBO:0000176" id="R_MAR08395" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -240630,7 +240634,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08395">
+            <rdf:Description rdf:about="#R_MAR08395">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/H6_ET2er"/>
@@ -240642,15 +240646,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01781r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02685r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01781r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02685r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00236r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01782r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00236r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01782r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08396" sboTerm="SBO:0000176" id="MAR08396" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08396" sboTerm="SBO:0000176" id="R_MAR08396" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -240658,7 +240662,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08396">
+            <rdf:Description rdf:about="#R_MAR08396">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/H6ET3er"/>
@@ -240670,15 +240674,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02430r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02685r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02430r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02685r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00236r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01779r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00236r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01779r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08397" sboTerm="SBO:0000176" id="MAR08397" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08397" sboTerm="SBO:0000176" id="R_MAR08397" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -240686,7 +240690,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08397">
+            <rdf:Description rdf:about="#R_MAR08397">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.-.-"/>
@@ -240699,15 +240703,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01781r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02685r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01781r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02685r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00236r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01779r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00236r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01779r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08398" sboTerm="SBO:0000176" id="MAR08398" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08398" sboTerm="SBO:0000176" id="R_MAR08398" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -240715,7 +240719,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08398">
+            <rdf:Description rdf:about="#R_MAR08398">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/H7ET2er"/>
@@ -240727,15 +240731,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01779r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02685r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01779r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02685r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00236r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02020r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00236r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02020r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08399" sboTerm="SBO:0000176" id="MAR08399" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08399" sboTerm="SBO:0000176" id="R_MAR08399" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -240743,7 +240747,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08399">
+            <rdf:Description rdf:about="#R_MAR08399">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.-.-"/>
@@ -240756,15 +240760,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01782r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02685r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01782r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02685r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00236r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02020r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00236r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02020r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08401" sboTerm="SBO:0000176" id="MAR08401" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08401" sboTerm="SBO:0000176" id="R_MAR08401" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -240772,7 +240776,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08401">
+            <rdf:Description rdf:about="#R_MAR08401">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/M4CET3er"/>
@@ -240784,15 +240788,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02432r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02685r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02432r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02685r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00236r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02461r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00236r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02461r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08402" sboTerm="SBO:0000176" id="MAR08402" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08402" sboTerm="SBO:0000176" id="R_MAR08402" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -240800,7 +240804,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08402">
+            <rdf:Description rdf:about="#R_MAR08402">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/H7_TAer"/>
@@ -240811,15 +240815,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01779r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02001r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01779r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02001r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01780r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02022r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01780r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02022r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08403" sboTerm="SBO:0000176" id="MAR08403" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08403" sboTerm="SBO:0000176" id="R_MAR08403" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -240827,7 +240831,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08403">
+            <rdf:Description rdf:about="#R_MAR08403">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.-.-"/>
@@ -240840,19 +240844,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01780r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01780r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01665r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02674r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01665r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02674r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="PGAP1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08404" sboTerm="SBO:0000176" id="MAR08404" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08404" sboTerm="SBO:0000176" id="R_MAR08404" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -240860,7 +240864,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08404">
+            <rdf:Description rdf:about="#R_MAR08404">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/H8TAer"/>
@@ -240872,15 +240876,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02001r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02020r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02001r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02020r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02021r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02022r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02021r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02022r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08405" sboTerm="SBO:0000176" id="MAR08405" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08405" sboTerm="SBO:0000176" id="R_MAR08405" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -240888,7 +240892,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08405">
+            <rdf:Description rdf:about="#R_MAR08405">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.-.-"/>
@@ -240901,19 +240905,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02021r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02021r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01687r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02674r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01687r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02674r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="PGAP1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08406" sboTerm="SBO:0000176" id="MAR08406" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08406" sboTerm="SBO:0000176" id="R_MAR08406" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -240921,7 +240925,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08406">
+            <rdf:Description rdf:about="#R_MAR08406">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/M4ATAer"/>
@@ -240932,15 +240936,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02001r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02433r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02001r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02433r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02022r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02434r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02022r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02434r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08407" sboTerm="SBO:0000176" id="MAR08407" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08407" sboTerm="SBO:0000176" id="R_MAR08407" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -240948,7 +240952,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08407">
+            <rdf:Description rdf:about="#R_MAR08407">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/M4BTAer"/>
@@ -240960,15 +240964,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02001r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02461r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02001r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02461r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02022r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02462r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02022r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02462r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01979" sboTerm="SBO:0000176" id="MAR01979" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01979" sboTerm="SBO:0000176" id="R_MAR01979" name="Pregnenolone:NAD+ 3-oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -240977,7 +240981,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01979">
+            <rdf:Description rdf:about="#R_MAR01979">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.145"/>
@@ -240993,19 +240997,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02552c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02763c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02763c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02760c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02760c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG7724"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01980" sboTerm="SBO:0000176" id="MAR01980" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01980" sboTerm="SBO:0000176" id="R_MAR01980" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -241014,7 +241018,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01980">
+            <rdf:Description rdf:about="#R_MAR01980">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/5.3.3.1"/>
@@ -241029,16 +241033,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02760c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02760c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02769c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02769c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG7724"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01985" sboTerm="SBO:0000176" id="MAR01985" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01985" sboTerm="SBO:0000176" id="R_MAR01985" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -241047,7 +241051,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01985">
+            <rdf:Description rdf:about="#R_MAR01985">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.99.-"/>
@@ -241060,21 +241064,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00409c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00409c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00971c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01252c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00971c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01252c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="ninaB"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01987" sboTerm="SBO:0000176" id="MAR01987" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01987" sboTerm="SBO:0000176" id="R_MAR01987" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -241083,7 +241087,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01987">
+            <rdf:Description rdf:about="#R_MAR01987">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.99.-"/>
@@ -241095,21 +241099,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00409r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00409r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00971r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01252r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00971r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01252r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="ninaB"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01999" sboTerm="SBO:0000176" id="MAR01999" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01999" sboTerm="SBO:0000176" id="R_MAR01999" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -241118,7 +241122,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01999">
+            <rdf:Description rdf:about="#R_MAR01999">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.15.4"/>
@@ -241131,22 +241135,22 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01615c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01615c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00284c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01252c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM00284c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01252c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="2" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="ninaB"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02000" sboTerm="SBO:0000176" id="MAR02000" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02000" sboTerm="SBO:0000176" id="R_MAR02000" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -241155,7 +241159,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02000">
+            <rdf:Description rdf:about="#R_MAR02000">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.15.4"/>
@@ -241168,22 +241172,22 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01615m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555m" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02630m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01615m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555m" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02630m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00284m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01252m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02554m" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM00284m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01252m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02554m" stoichiometry="2" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="ninaB"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02001" sboTerm="SBO:0000176" id="MAR02001" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02001" sboTerm="SBO:0000176" id="R_MAR02001" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -241192,7 +241196,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02001">
+            <rdf:Description rdf:about="#R_MAR02001">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.15.4"/>
@@ -241204,22 +241208,22 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01615r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555r" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02630r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01615r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555r" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02630r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00284r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01252r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040r" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02554r" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM00284r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01252r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02554r" stoichiometry="2" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="ninaB"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01310" sboTerm="SBO:0000176" id="MAR01310" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01310" sboTerm="SBO:0000176" id="R_MAR01310" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -241228,7 +241232,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01310">
+            <rdf:Description rdf:about="#R_MAR01310">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R03521"/>
@@ -241240,14 +241244,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01168r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01168r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02795r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02795r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01312" sboTerm="SBO:0000176" id="MAR01312" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01312" sboTerm="SBO:0000176" id="R_MAR01312" name="(5Z,13E)-(15S)-9alpha,11alpha-epidioxy-15-hydroxyprosta-5,13- dienoate E-isomerase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -241256,7 +241260,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01312">
+            <rdf:Description rdf:about="#R_MAR01312">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/5.3.99.3"/>
@@ -241272,10 +241276,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02794c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02794c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02786c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02786c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -241286,7 +241290,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01313" sboTerm="SBO:0000176" id="MAR01313" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01313" sboTerm="SBO:0000176" id="R_MAR01313" name="(5Z,13E)-(15S)-9alpha,11alpha-Epidioxy-15-hydroxyprosta-5,13-thromboxane-A2-isomerase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -241295,7 +241299,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01313">
+            <rdf:Description rdf:about="#R_MAR01313">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/5.3.99.5"/>
@@ -241311,16 +241315,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02794r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02794r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02994r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02994r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Cyp9c1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01315" sboTerm="SBO:0000176" id="MAR01315" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01315" sboTerm="SBO:0000176" id="R_MAR01315" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -241328,7 +241332,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01315">
+            <rdf:Description rdf:about="#R_MAR01315">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R03878"/>
@@ -241340,14 +241344,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02994r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02994r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02995r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02995r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01317" sboTerm="SBO:0000176" id="MAR01317" name="NAD Dependent 11-Hydroxythromboxane B2 Dehydrogenase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01317" sboTerm="SBO:0000176" id="R_MAR01317" name="NAD Dependent 11-Hydroxythromboxane B2 Dehydrogenase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -241355,7 +241359,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01317">
+            <rdf:Description rdf:about="#R_MAR01317">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/RE3477C1"/>
@@ -241371,16 +241375,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00293c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00293c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02552c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02995c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02995c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01318" sboTerm="SBO:0000176" id="MAR01318" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01318" sboTerm="SBO:0000176" id="R_MAR01318" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -241388,7 +241392,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01318">
+            <rdf:Description rdf:about="#R_MAR01318">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R03521"/>
@@ -241400,14 +241404,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01168c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01168c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02795c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02795c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01319" sboTerm="SBO:0000176" id="MAR01319" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01319" sboTerm="SBO:0000176" id="R_MAR01319" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -241415,7 +241419,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01319">
+            <rdf:Description rdf:about="#R_MAR01319">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_1319"/>
@@ -241425,16 +241429,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01167c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01167c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01168c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01168c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01320" sboTerm="SBO:0000176" id="MAR01320" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01320" sboTerm="SBO:0000176" id="R_MAR01320" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -241442,7 +241446,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01320">
+            <rdf:Description rdf:about="#R_MAR01320">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_1320"/>
@@ -241452,17 +241456,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01168c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02553c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01168c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02553c" stoichiometry="2" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02788c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02788c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01321" sboTerm="SBO:0000176" id="MAR01321" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01321" sboTerm="SBO:0000176" id="R_MAR01321" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -241471,7 +241475,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01321">
+            <rdf:Description rdf:about="#R_MAR01321">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.-"/>
@@ -241486,17 +241490,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02777c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02777c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02786c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02786c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Rpp14a"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01322" sboTerm="SBO:0000176" id="MAR01322" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01322" sboTerm="SBO:0000176" id="R_MAR01322" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -241505,7 +241509,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01322">
+            <rdf:Description rdf:about="#R_MAR01322">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/5.3.-.-"/>
@@ -241520,13 +241524,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02777c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02777c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02781c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02781c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01323" sboTerm="SBO:0000176" id="MAR01323" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01323" sboTerm="SBO:0000176" id="R_MAR01323" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -241535,7 +241539,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01323">
+            <rdf:Description rdf:about="#R_MAR01323">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/5.3.3.9"/>
@@ -241550,13 +241554,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02779c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02779c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02781c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02781c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01324" sboTerm="SBO:0000176" id="MAR01324" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01324" sboTerm="SBO:0000176" id="R_MAR01324" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -241565,7 +241569,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01324">
+            <rdf:Description rdf:about="#R_MAR01324">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR103603"/>
@@ -241576,14 +241580,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02779c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02779c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02786c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02786c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01325" sboTerm="SBO:0000176" id="MAR01325" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01325" sboTerm="SBO:0000176" id="R_MAR01325" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -241591,7 +241595,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01325">
+            <rdf:Description rdf:about="#R_MAR01325">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.188"/>
@@ -241604,19 +241608,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02552c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02789c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02789c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02794c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02794c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Akr1B"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01326" sboTerm="SBO:0000176" id="MAR01326" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01326" sboTerm="SBO:0000176" id="R_MAR01326" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -241625,7 +241629,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01326">
+            <rdf:Description rdf:about="#R_MAR01326">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.188"/>
@@ -241640,19 +241644,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02789c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02789c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02794c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02794c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Akr1B"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01327" sboTerm="SBO:0000176" id="MAR01327" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01327" sboTerm="SBO:0000176" id="R_MAR01327" name="(5Z,13E)-(15S)-9alpha,11alpha,15-trihydroxyprosta-5,13-dienoate:NADP+ 9-oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -241660,7 +241664,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01327">
+            <rdf:Description rdf:about="#R_MAR01327">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.184"/>
@@ -241676,13 +241680,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02789c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02789c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02786c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02786c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -241691,7 +241695,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01328" sboTerm="SBO:0000176" id="MAR01328" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01328" sboTerm="SBO:0000176" id="R_MAR01328" name="(5Z,13E)-(15S)-9alpha,11alpha,15-Trihydroxyprosta-5,13-dienoate:NAD+ 15-oxidoreductase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -241699,7 +241703,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01328">
+            <rdf:Description rdf:about="#R_MAR01328">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R02683"/>
@@ -241711,16 +241715,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00392c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00392c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02552c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02789c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02789c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01329" sboTerm="SBO:0000176" id="MAR01329" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01329" sboTerm="SBO:0000176" id="R_MAR01329" name="(5Z,13E)-(15S)-9alpha,11alpha,15-trihydroxyprosta-5,13-dienoate:NADP+ 11-oxidoreductase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -241728,7 +241732,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01329">
+            <rdf:Description rdf:about="#R_MAR01329">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.188"/>
@@ -241743,19 +241747,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02783c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02783c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02789c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02789c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Akr1B"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01330" sboTerm="SBO:0000176" id="MAR01330" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01330" sboTerm="SBO:0000176" id="R_MAR01330" name="(5Z,13E)-(15S)-9alpha,11alpha-epidioxy-15-hydroxyprosta-5,13- dienoate D-isomerase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -241763,7 +241767,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01330">
+            <rdf:Description rdf:about="#R_MAR01330">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/5.3.99.2"/>
@@ -241778,16 +241782,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02794c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02794c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02783c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02783c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="GstS1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01332" sboTerm="SBO:0000176" id="MAR01332" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01332" sboTerm="SBO:0000176" id="R_MAR01332" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -241796,7 +241800,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01332">
+            <rdf:Description rdf:about="#R_MAR01332">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R02801"/>
@@ -241811,14 +241815,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02796c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02796c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02783c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02783c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01333" sboTerm="SBO:0000176" id="MAR01333" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01333" sboTerm="SBO:0000176" id="R_MAR01333" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -241827,7 +241831,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01333">
+            <rdf:Description rdf:about="#R_MAR01333">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R02801"/>
@@ -241842,14 +241846,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02796r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02796r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02783r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02783r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01334" sboTerm="SBO:0000176" id="MAR01334" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01334" sboTerm="SBO:0000176" id="R_MAR01334" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -241858,7 +241862,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01334">
+            <rdf:Description rdf:about="#R_MAR01334">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR103895"/>
@@ -241869,14 +241873,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00384c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00384c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02783c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02783c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01335" sboTerm="SBO:0000176" id="MAR01335" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01335" sboTerm="SBO:0000176" id="R_MAR01335" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -241885,7 +241889,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01335">
+            <rdf:Description rdf:about="#R_MAR01335">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R02801"/>
@@ -241897,14 +241901,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01662r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01662r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02783r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02783r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01336" sboTerm="SBO:0000176" id="MAR01336" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01336" sboTerm="SBO:0000176" id="R_MAR01336" name="(5Z,13E)-(15S)-9alpha,15-dihydroxy-11-oxoprosta-5,13-dienoate:NADP+ 15-oxidoreductase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -241912,7 +241916,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01336">
+            <rdf:Description rdf:about="#R_MAR01336">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R02800"/>
@@ -241924,16 +241928,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00381c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00381c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02783c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02783c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01337" sboTerm="SBO:0000176" id="MAR01337" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01337" sboTerm="SBO:0000176" id="R_MAR01337" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -241941,7 +241945,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01337">
+            <rdf:Description rdf:about="#R_MAR01337">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_1337"/>
@@ -241951,14 +241955,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00338c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00338c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00381c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM00381c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="2" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01338" sboTerm="SBO:0000176" id="MAR01338" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01338" sboTerm="SBO:0000176" id="R_MAR01338" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -241966,7 +241970,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01338">
+            <rdf:Description rdf:about="#R_MAR01338">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_1338"/>
@@ -241977,14 +241981,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00382c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00382c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02783c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02783c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01339" sboTerm="SBO:0000176" id="MAR01339" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01339" sboTerm="SBO:0000176" id="R_MAR01339" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -241993,7 +241997,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01339">
+            <rdf:Description rdf:about="#R_MAR01339">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/5.3.99.5"/>
@@ -242005,18 +242009,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00308c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02441c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00308c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02441c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02794c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02794c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Cyp9c1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01341" sboTerm="SBO:0000176" id="MAR01341" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01341" sboTerm="SBO:0000176" id="R_MAR01341" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -242025,7 +242029,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01341">
+            <rdf:Description rdf:about="#R_MAR01341">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.-.-"/>
@@ -242036,16 +242040,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02800c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02800c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01983c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02786c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01983c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02786c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01342" sboTerm="SBO:0000176" id="MAR01342" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01342" sboTerm="SBO:0000176" id="R_MAR01342" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -242054,7 +242058,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01342">
+            <rdf:Description rdf:about="#R_MAR01342">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.-.-"/>
@@ -242066,16 +242070,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02798c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02798c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01983c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02786c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01983c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02786c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01343" sboTerm="SBO:0000176" id="MAR01343" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01343" sboTerm="SBO:0000176" id="R_MAR01343" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -242084,7 +242088,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01343">
+            <rdf:Description rdf:about="#R_MAR01343">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.-.-"/>
@@ -242096,16 +242100,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02799c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02799c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01983c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02786c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01983c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02786c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01344" sboTerm="SBO:0000176" id="MAR01344" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01344" sboTerm="SBO:0000176" id="R_MAR01344" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -242113,7 +242117,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01344">
+            <rdf:Description rdf:about="#R_MAR01344">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.141"/>
@@ -242124,13 +242128,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00395c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00395c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02800c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02800c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -242139,7 +242143,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01345" sboTerm="SBO:0000176" id="MAR01345" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01345" sboTerm="SBO:0000176" id="R_MAR01345" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -242148,7 +242152,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01345">
+            <rdf:Description rdf:about="#R_MAR01345">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR103604"/>
@@ -242159,14 +242163,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02797c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02797c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02800c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02800c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01346" sboTerm="SBO:0000176" id="MAR01346" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01346" sboTerm="SBO:0000176" id="R_MAR01346" name="fatty acylamide amidohydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -242175,7 +242179,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01346">
+            <rdf:Description rdf:about="#R_MAR01346">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.5.1.99"/>
@@ -242188,12 +242192,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01362c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01797c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01362c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01797c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01335c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01335c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -242202,7 +242206,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01347" sboTerm="SBO:0000176" id="MAR01347" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01347" sboTerm="SBO:0000176" id="R_MAR01347" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -242211,7 +242215,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01347">
+            <rdf:Description rdf:about="#R_MAR01347">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.5.1.99"/>
@@ -242223,13 +242227,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00635c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00635c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01362c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01983c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01362c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01983c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -242238,7 +242242,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01352" sboTerm="SBO:0000176" id="MAR01352" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01352" sboTerm="SBO:0000176" id="R_MAR01352" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -242247,7 +242251,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01352">
+            <rdf:Description rdf:about="#R_MAR01352">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.3.4"/>
@@ -242259,12 +242263,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00534c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00534c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00635c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00635c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -242277,7 +242281,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01355" sboTerm="SBO:0000176" id="MAR01355" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01355" sboTerm="SBO:0000176" id="R_MAR01355" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -242286,7 +242290,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#meta_MAR01355">
+            <rdf:Description rdf:about="#meta_R_MAR01355">
               <bqbiol:is>
                 <rdf:Bag/>
               </bqbiol:is>
@@ -242294,15 +242298,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01362c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01362c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01214c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01214c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01356" sboTerm="SBO:0000176" id="MAR01356" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01356" sboTerm="SBO:0000176" id="R_MAR01356" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -242311,7 +242315,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01356">
+            <rdf:Description rdf:about="#R_MAR01356">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/RE3457C"/>
@@ -242321,16 +242325,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01214c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01368c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01214c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01368c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01063c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02489c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01063c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02489c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01357" sboTerm="SBO:0000176" id="MAR01357" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01357" sboTerm="SBO:0000176" id="R_MAR01357" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -242339,7 +242343,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01357">
+            <rdf:Description rdf:about="#R_MAR01357">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/RE3456C"/>
@@ -242349,16 +242353,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01063c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01368c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01063c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01368c" stoichiometry="2" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01062c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01655c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01062c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01655c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01358" sboTerm="SBO:0000176" id="MAR01358" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01358" sboTerm="SBO:0000176" id="R_MAR01358" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -242367,7 +242371,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#meta_MAR01358">
+            <rdf:Description rdf:about="#meta_R_MAR01358">
               <bqbiol:is>
                 <rdf:Bag/>
               </bqbiol:is>
@@ -242375,15 +242379,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01362c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02631c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01362c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02631c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01246c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01246c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01359" sboTerm="SBO:0000176" id="MAR01359" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01359" sboTerm="SBO:0000176" id="R_MAR01359" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -242392,7 +242396,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01359">
+            <rdf:Description rdf:about="#R_MAR01359">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/RE3451C"/>
@@ -242402,16 +242406,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01246c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01368c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01246c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01368c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01223c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02489c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01223c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02489c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01360" sboTerm="SBO:0000176" id="MAR01360" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01360" sboTerm="SBO:0000176" id="R_MAR01360" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -242420,7 +242424,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01360">
+            <rdf:Description rdf:about="#R_MAR01360">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/RE3450C"/>
@@ -242430,16 +242434,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01223c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01368c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01223c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01368c" stoichiometry="2" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01061c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01655c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01061c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01655c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01361" sboTerm="SBO:0000176" id="MAR01361" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01361" sboTerm="SBO:0000176" id="R_MAR01361" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -242448,7 +242452,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#meta_MAR01361">
+            <rdf:Description rdf:about="#meta_R_MAR01361">
               <bqbiol:is>
                 <rdf:Bag/>
               </bqbiol:is>
@@ -242456,15 +242460,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01362c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02631c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01362c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02631c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00302c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00302c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01362" sboTerm="SBO:0000176" id="MAR01362" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01362" sboTerm="SBO:0000176" id="R_MAR01362" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -242473,7 +242477,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01362">
+            <rdf:Description rdf:about="#R_MAR01362">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/RE3460C"/>
@@ -242483,16 +242487,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00302c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01368c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00302c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01368c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01222c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02489c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01222c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02489c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01363" sboTerm="SBO:0000176" id="MAR01363" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01363" sboTerm="SBO:0000176" id="R_MAR01363" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -242501,7 +242505,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01363">
+            <rdf:Description rdf:about="#R_MAR01363">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/RE3459C"/>
@@ -242511,15 +242515,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01221c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01221c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01222c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM01222c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="4" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01364" sboTerm="SBO:0000176" id="MAR01364" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01364" sboTerm="SBO:0000176" id="R_MAR01364" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -242528,7 +242532,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#meta_MAR01364">
+            <rdf:Description rdf:about="#meta_R_MAR01364">
               <bqbiol:is>
                 <rdf:Bag/>
               </bqbiol:is>
@@ -242536,15 +242540,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01362c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02631c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01362c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02631c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00335c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00335c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01365" sboTerm="SBO:0000176" id="MAR01365" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01365" sboTerm="SBO:0000176" id="R_MAR01365" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -242553,7 +242557,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01365">
+            <rdf:Description rdf:about="#R_MAR01365">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/RE3454C"/>
@@ -242563,16 +242567,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00335c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01368c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00335c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01368c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00281c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02489c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00281c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02489c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01366" sboTerm="SBO:0000176" id="MAR01366" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01366" sboTerm="SBO:0000176" id="R_MAR01366" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -242581,7 +242585,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01366">
+            <rdf:Description rdf:about="#R_MAR01366">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/RE3453C"/>
@@ -242591,15 +242595,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00281c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM00281c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="4" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00282c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00282c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01367" sboTerm="SBO:0000176" id="MAR01367" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01367" sboTerm="SBO:0000176" id="R_MAR01367" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -242608,7 +242612,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01367">
+            <rdf:Description rdf:about="#R_MAR01367">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.188"/>
@@ -242621,11 +242625,11 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02026c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02796c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02796c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02864c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02864c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -242642,7 +242646,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01370" sboTerm="SBO:0000176" id="MAR01370" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01370" sboTerm="SBO:0000176" id="R_MAR01370" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -242651,7 +242655,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01370">
+            <rdf:Description rdf:about="#R_MAR01370">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.5.1.18"/>
@@ -242663,11 +242667,11 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02026c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02777c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02777c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02863c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02863c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -242683,7 +242687,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01373" sboTerm="SBO:0000176" id="MAR01373" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01373" sboTerm="SBO:0000176" id="R_MAR01373" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -242691,7 +242695,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01373">
+            <rdf:Description rdf:about="#R_MAR01373">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R05058"/>
@@ -242703,13 +242707,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01662c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01662c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02796c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02796c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01374" sboTerm="SBO:0000176" id="MAR01374" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01374" sboTerm="SBO:0000176" id="R_MAR01374" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -242717,7 +242721,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01374">
+            <rdf:Description rdf:about="#R_MAR01374">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R07067"/>
@@ -242729,14 +242733,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00383c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00383c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01662c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01662c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01375" sboTerm="SBO:0000176" id="MAR01375" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01375" sboTerm="SBO:0000176" id="R_MAR01375" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -242745,7 +242749,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01375">
+            <rdf:Description rdf:about="#R_MAR01375">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR103607"/>
@@ -242756,14 +242760,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00385c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00385c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02796c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02796c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01376" sboTerm="SBO:0000176" id="MAR01376" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01376" sboTerm="SBO:0000176" id="R_MAR01376" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -242772,7 +242776,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01376">
+            <rdf:Description rdf:about="#R_MAR01376">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR103896"/>
@@ -242783,14 +242787,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00385c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00385c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01662c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01662c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01379" sboTerm="SBO:0000176" id="MAR01379" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01379" sboTerm="SBO:0000176" id="R_MAR01379" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -242799,7 +242803,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01379">
+            <rdf:Description rdf:about="#R_MAR01379">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.5.1.18"/>
@@ -242811,11 +242815,11 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01662c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02026c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01662c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02860c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02860c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -242831,7 +242835,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01382" sboTerm="SBO:0000176" id="MAR01382" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01382" sboTerm="SBO:0000176" id="R_MAR01382" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -242840,7 +242844,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01382">
+            <rdf:Description rdf:about="#R_MAR01382">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.188"/>
@@ -242852,19 +242856,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02860c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02860c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02852c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02852c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Akr1B"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01383" sboTerm="SBO:0000176" id="MAR01383" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01383" sboTerm="SBO:0000176" id="R_MAR01383" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -242873,7 +242877,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01383">
+            <rdf:Description rdf:about="#R_MAR01383">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR103953"/>
@@ -242884,15 +242888,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01234c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01234c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02783c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02783c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01384" sboTerm="SBO:0000176" id="MAR01384" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01384" sboTerm="SBO:0000176" id="R_MAR01384" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -242901,7 +242905,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01384">
+            <rdf:Description rdf:about="#R_MAR01384">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.5.1.18"/>
@@ -242913,11 +242917,11 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01234c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02026c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01234c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02859c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02859c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -242933,7 +242937,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01387" sboTerm="SBO:0000176" id="MAR01387" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01387" sboTerm="SBO:0000176" id="R_MAR01387" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -242942,7 +242946,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01387">
+            <rdf:Description rdf:about="#R_MAR01387">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.188"/>
@@ -242954,19 +242958,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02859c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02859c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02851c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02851c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Akr1B"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01389" sboTerm="SBO:0000176" id="MAR01389" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01389" sboTerm="SBO:0000176" id="R_MAR01389" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -242975,7 +242979,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01389">
+            <rdf:Description rdf:about="#R_MAR01389">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR103972"/>
@@ -242986,15 +242990,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00378c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00378c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00391c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM00391c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="2" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01394" sboTerm="SBO:0000176" id="MAR01394" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01394" sboTerm="SBO:0000176" id="R_MAR01394" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -243003,7 +243007,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01394">
+            <rdf:Description rdf:about="#R_MAR01394">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/5.3.99.3"/>
@@ -243017,10 +243021,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02785c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02785c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02793c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02793c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -243031,7 +243035,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01395" sboTerm="SBO:0000176" id="MAR01395" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01395" sboTerm="SBO:0000176" id="R_MAR01395" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -243040,7 +243044,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01395">
+            <rdf:Description rdf:about="#R_MAR01395">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.-"/>
@@ -243054,17 +243058,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02776c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02776c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02785c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02785c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Rpp14a"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01398" sboTerm="SBO:0000176" id="MAR01398" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01398" sboTerm="SBO:0000176" id="R_MAR01398" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -243073,7 +243077,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01398">
+            <rdf:Description rdf:about="#R_MAR01398">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.5.1.18"/>
@@ -243085,11 +243089,11 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02026c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02776c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02776c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02862c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02862c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -243105,7 +243109,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01401" sboTerm="SBO:0000176" id="MAR01401" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01401" sboTerm="SBO:0000176" id="R_MAR01401" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -243114,7 +243118,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01401">
+            <rdf:Description rdf:about="#R_MAR01401">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/5.3.3.9"/>
@@ -243129,13 +243133,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02776c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02776c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02780c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02780c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01402" sboTerm="SBO:0000176" id="MAR01402" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01402" sboTerm="SBO:0000176" id="R_MAR01402" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -243144,7 +243148,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01402">
+            <rdf:Description rdf:about="#R_MAR01402">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/5.3.3.9"/>
@@ -243158,13 +243162,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02778c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02778c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02780c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02780c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR00703" sboTerm="SBO:0000176" id="MAR00703" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00703" sboTerm="SBO:0000176" id="R_MAR00703" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -243173,7 +243177,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00703">
+            <rdf:Description rdf:about="#R_MAR00703">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.2.1.2"/>
@@ -243186,20 +243190,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039x" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02555x" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02678x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039x" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02555x" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02678x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01597x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02114x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554x" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01597x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02114x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554x" stoichiometry="2" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG5065"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00705" sboTerm="SBO:0000176" id="MAR00705" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00705" sboTerm="SBO:0000176" id="R_MAR00705" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -243208,7 +243212,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00705">
+            <rdf:Description rdf:about="#R_MAR00705">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.42"/>
@@ -243221,18 +243225,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01690x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02678x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01690x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02678x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00550x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00550x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Gnpat"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00706" sboTerm="SBO:0000176" id="MAR00706" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00706" sboTerm="SBO:0000176" id="R_MAR00706" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -243241,7 +243245,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00706">
+            <rdf:Description rdf:about="#R_MAR00706">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.42"/>
@@ -243254,19 +243258,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00550x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02114x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00550x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02114x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02017x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02674x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02017x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02674x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Gnpat"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00708" sboTerm="SBO:0000176" id="MAR00708" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00708" sboTerm="SBO:0000176" id="R_MAR00708" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -243275,7 +243279,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00708">
+            <rdf:Description rdf:about="#R_MAR00708">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.42"/>
@@ -243288,19 +243292,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02017c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02017c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00532c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00532c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Gnpat"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07598" sboTerm="SBO:0000176" id="MAR07598" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07598" sboTerm="SBO:0000176" id="R_MAR07598" name="1-Alkyl-2-acyl-sn-glycero-3-phosphate phosphohydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -243308,7 +243312,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07598">
+            <rdf:Description rdf:about="#R_MAR07598">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.3.4"/>
@@ -243321,12 +243325,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00628c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00628c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00514c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00514c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -243339,7 +243343,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07600" sboTerm="SBO:0000176" id="MAR07600" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07600" sboTerm="SBO:0000176" id="R_MAR07600" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -243347,7 +243351,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07600">
+            <rdf:Description rdf:about="#R_MAR07600">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.8.2"/>
@@ -243361,19 +243365,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00514c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01425c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00514c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01425c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00560c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01590c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00560c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01590c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="bbc"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07602" sboTerm="SBO:0000176" id="MAR07602" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07602" sboTerm="SBO:0000176" id="R_MAR07602" name="Acyl-CoA:1-alkenylglycerophosphoethanolamine O-acyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -243381,7 +243385,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07602">
+            <rdf:Description rdf:about="#R_MAR07602">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.23"/>
@@ -243394,12 +243398,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00223c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM10007c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00223c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM10007c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02629c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02629c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -243408,7 +243412,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07603" sboTerm="SBO:0000176" id="MAR07603" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07603" sboTerm="SBO:0000176" id="R_MAR07603" name="plasmenylethanolamine 2-acylhydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -243416,7 +243420,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07603">
+            <rdf:Description rdf:about="#R_MAR07603">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.4"/>
@@ -243428,16 +243432,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02629c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02629c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00223c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM10005c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00223c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM10005c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07604" sboTerm="SBO:0000176" id="MAR07604" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07604" sboTerm="SBO:0000176" id="R_MAR07604" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -243445,7 +243449,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07604">
+            <rdf:Description rdf:about="#R_MAR07604">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.8.1"/>
@@ -243458,13 +243462,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00512c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01428c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00512c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01428c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01590c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02629c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01590c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02629c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -243473,7 +243477,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07605" sboTerm="SBO:0000176" id="MAR07605" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07605" sboTerm="SBO:0000176" id="R_MAR07605" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -243481,7 +243485,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07605">
+            <rdf:Description rdf:about="#R_MAR07605">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.4.4"/>
@@ -243494,13 +243498,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02629c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02629c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00627c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01797c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00627c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01797c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -243509,7 +243513,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07610" sboTerm="SBO:0000176" id="MAR07610" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07610" sboTerm="SBO:0000176" id="R_MAR07610" name="CDP-choline:1-alkyl-2-acetylglycerol cholinephosphotransferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -243517,7 +243521,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07610">
+            <rdf:Description rdf:about="#R_MAR07610">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.8.2"/>
@@ -243530,19 +243534,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00513c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01425c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00513c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01425c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00626c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01590c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00626c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01590c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="bbc"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07614" sboTerm="SBO:0000176" id="MAR07614" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07614" sboTerm="SBO:0000176" id="R_MAR07614" name="Acyl-CoA:1-alkyl-sn-glycero-3-phosphocholine O-acyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -243550,7 +243554,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07614">
+            <rdf:Description rdf:about="#R_MAR07614">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.23"/>
@@ -243563,12 +243567,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00549c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM10007c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00549c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM10007c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00560c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00560c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -243577,7 +243581,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07615" sboTerm="SBO:0000176" id="MAR07615" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07615" sboTerm="SBO:0000176" id="R_MAR07615" name="plasmanylcholine 2-acylhydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -243585,7 +243589,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07615">
+            <rdf:Description rdf:about="#R_MAR07615">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.4"/>
@@ -243598,16 +243602,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00560c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00560c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00549c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM10005c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00549c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM10005c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR00024" sboTerm="SBO:0000176" id="MAR00024" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00024" sboTerm="SBO:0000176" id="R_MAR00024" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -243615,7 +243619,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00024">
+            <rdf:Description rdf:about="#R_MAR00024">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_0024"/>
@@ -243625,11 +243629,11 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01816n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02757n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01816n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02757n" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01268n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01268n" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -243667,7 +243671,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00025" sboTerm="SBO:0000185" id="MAR00025" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00025" sboTerm="SBO:0000185" id="R_MAR00025" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -243676,7 +243680,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00025">
+            <rdf:Description rdf:about="#R_MAR00025">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_0025"/>
@@ -243686,10 +243690,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01268n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01268n" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01268c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01268c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -243698,7 +243702,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00026" sboTerm="SBO:0000185" id="MAR00026" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00026" sboTerm="SBO:0000185" id="R_MAR00026" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -243707,7 +243711,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00026">
+            <rdf:Description rdf:about="#R_MAR00026">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_0026"/>
@@ -243717,10 +243721,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01268c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01268c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01268r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01268r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -243735,7 +243739,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00027" sboTerm="SBO:0000185" id="MAR00027" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00027" sboTerm="SBO:0000185" id="R_MAR00027" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -243744,7 +243748,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00027">
+            <rdf:Description rdf:about="#R_MAR00027">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_0027"/>
@@ -243754,10 +243758,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01268c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01268c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01268m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01268m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -243770,7 +243774,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00028" sboTerm="SBO:0000185" id="MAR00028" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00028" sboTerm="SBO:0000185" id="R_MAR00028" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -243779,7 +243783,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00028">
+            <rdf:Description rdf:about="#R_MAR00028">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_0028"/>
@@ -243789,10 +243793,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01268c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01268c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01268x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01268x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -243801,7 +243805,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00029" sboTerm="SBO:0000185" id="MAR00029" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00029" sboTerm="SBO:0000185" id="R_MAR00029" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -243810,7 +243814,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00029">
+            <rdf:Description rdf:about="#R_MAR00029">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_0029"/>
@@ -243820,10 +243824,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01268c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01268c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01268e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01268e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -243837,7 +243841,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00030" sboTerm="SBO:0000185" id="MAR00030" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00030" sboTerm="SBO:0000185" id="R_MAR00030" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -243846,7 +243850,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00030">
+            <rdf:Description rdf:about="#R_MAR00030">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_0030"/>
@@ -243856,10 +243860,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01268c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01268c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01268n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01268n" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -243880,7 +243884,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07200" sboTerm="SBO:0000176" id="MAR07200" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07200" sboTerm="SBO:0000176" id="R_MAR07200" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -243888,7 +243892,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07200">
+            <rdf:Description rdf:about="#R_MAR07200">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.2.26"/>
@@ -243903,19 +243907,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00205r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03112r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00205r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03112r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03156r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03156r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="oxt"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07202" sboTerm="SBO:0000176" id="MAR07202" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07202" sboTerm="SBO:0000176" id="R_MAR07202" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -243923,7 +243927,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07202">
+            <rdf:Description rdf:about="#R_MAR07202">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.133"/>
@@ -243938,16 +243942,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03107g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03156g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03107g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03156g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01921g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01921g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106g" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07203" sboTerm="SBO:0000176" id="MAR07203" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07203" sboTerm="SBO:0000176" id="R_MAR07203" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -243955,7 +243959,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07203">
+            <rdf:Description rdf:about="#R_MAR07203">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.134"/>
@@ -243969,16 +243973,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01921g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03107g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01921g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03107g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01906g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01906g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106g" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07205" sboTerm="SBO:0000176" id="MAR07205" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07205" sboTerm="SBO:0000176" id="R_MAR07205" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -243986,7 +243990,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07205">
+            <rdf:Description rdf:about="#R_MAR07205">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.135"/>
@@ -244001,16 +244005,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01906g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03109g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01906g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03109g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00762g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00762g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106g" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07206" sboTerm="SBO:0000176" id="MAR07206" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07206" sboTerm="SBO:0000176" id="R_MAR07206" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -244018,7 +244022,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07206">
+            <rdf:Description rdf:about="#R_MAR07206">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.174"/>
@@ -244033,19 +244037,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00762g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03110g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00762g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03110g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01568g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01568g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106g" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Csgalnact"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07207" sboTerm="SBO:0000176" id="MAR07207" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07207" sboTerm="SBO:0000176" id="R_MAR07207" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -244053,7 +244057,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07207">
+            <rdf:Description rdf:about="#R_MAR07207">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.223"/>
@@ -244068,19 +244072,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00762g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03111g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00762g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03111g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02081g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02081g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106g" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="botv"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07208" sboTerm="SBO:0000176" id="MAR07208" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07208" sboTerm="SBO:0000176" id="R_MAR07208" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -244088,7 +244092,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07208">
+            <rdf:Description rdf:about="#R_MAR07208">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.224"/>
@@ -244102,13 +244106,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02081g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03109g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02081g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03109g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02088g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02088g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106g" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:and>
@@ -244117,7 +244121,7 @@
           </fbc:and>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07209" sboTerm="SBO:0000176" id="MAR07209" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07209" sboTerm="SBO:0000176" id="R_MAR07209" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -244125,7 +244129,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07209">
+            <rdf:Description rdf:about="#R_MAR07209">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.223"/>
@@ -244140,13 +244144,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02088g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03111g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02088g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03111g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02089g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02089g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106g" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -244159,7 +244163,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07210" sboTerm="SBO:0000176" id="MAR07210" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07210" sboTerm="SBO:0000176" id="R_MAR07210" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -244167,7 +244171,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07210">
+            <rdf:Description rdf:about="#R_MAR07210">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.224"/>
@@ -244181,13 +244185,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02089g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03109g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02089g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03109g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02090g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02090g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106g" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:and>
@@ -244196,7 +244200,7 @@
           </fbc:and>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07211" sboTerm="SBO:0000176" id="MAR07211" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07211" sboTerm="SBO:0000176" id="R_MAR07211" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -244204,7 +244208,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07211">
+            <rdf:Description rdf:about="#R_MAR07211">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.223"/>
@@ -244219,13 +244223,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02090g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03111g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02090g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03111g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02091g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02091g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106g" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -244238,7 +244242,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07212" sboTerm="SBO:0000176" id="MAR07212" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07212" sboTerm="SBO:0000176" id="R_MAR07212" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -244246,7 +244250,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07212">
+            <rdf:Description rdf:about="#R_MAR07212">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.224"/>
@@ -244260,13 +244264,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02091g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03109g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02091g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03109g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02092g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02092g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106g" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:and>
@@ -244275,7 +244279,7 @@
           </fbc:and>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07213" sboTerm="SBO:0000176" id="MAR07213" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07213" sboTerm="SBO:0000176" id="R_MAR07213" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -244283,7 +244287,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07213">
+            <rdf:Description rdf:about="#R_MAR07213">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.223"/>
@@ -244298,13 +244302,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02092g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03111g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02092g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03111g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02093g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02093g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106g" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -244317,7 +244321,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07214" sboTerm="SBO:0000176" id="MAR07214" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07214" sboTerm="SBO:0000176" id="R_MAR07214" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -244325,7 +244329,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07214">
+            <rdf:Description rdf:about="#R_MAR07214">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.224"/>
@@ -244339,13 +244343,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02093g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03109g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02093g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03109g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02094g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02094g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106g" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:and>
@@ -244354,7 +244358,7 @@
           </fbc:and>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07215" sboTerm="SBO:0000176" id="MAR07215" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07215" sboTerm="SBO:0000176" id="R_MAR07215" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -244362,7 +244366,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07215">
+            <rdf:Description rdf:about="#R_MAR07215">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.223"/>
@@ -244377,13 +244381,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02094g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03111g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02094g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03111g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02095g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02095g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106g" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -244396,7 +244400,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07216" sboTerm="SBO:0000176" id="MAR07216" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07216" sboTerm="SBO:0000176" id="R_MAR07216" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -244404,7 +244408,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07216">
+            <rdf:Description rdf:about="#R_MAR07216">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.8.2.8"/>
@@ -244417,21 +244421,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040g" stoichiometry="4" constant="true"/>
-          <speciesReference species="MAM02095g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02682g" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM02040g" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM02095g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02682g" stoichiometry="4" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01252g" stoichiometry="4" constant="true"/>
-          <speciesReference species="MAM02039g" stoichiometry="4" constant="true"/>
-          <speciesReference species="MAM02082g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02681g" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM01252g" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM02039g" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM02082g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02681g" stoichiometry="4" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="sfl"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07217" sboTerm="SBO:0000176" id="MAR07217" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07217" sboTerm="SBO:0000176" id="R_MAR07217" name="heparosan-N-sulfate-D-glucuronate glucurono-5-epimerase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -244439,7 +244443,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07217">
+            <rdf:Description rdf:about="#R_MAR07217">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/5.1.3.17"/>
@@ -244454,16 +244458,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02082g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02082g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02083g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02083g" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Hsepi"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07218" sboTerm="SBO:0000176" id="MAR07218" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07218" sboTerm="SBO:0000176" id="R_MAR07218" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -244471,7 +244475,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07218">
+            <rdf:Description rdf:about="#R_MAR07218">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.8.2.-"/>
@@ -244484,19 +244488,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02083g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02682g" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02083g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02682g" stoichiometry="2" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039g" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02084g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02681g" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02039g" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02084g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02681g" stoichiometry="2" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Hs2st"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07219" sboTerm="SBO:0000176" id="MAR07219" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07219" sboTerm="SBO:0000176" id="R_MAR07219" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -244504,7 +244508,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07219">
+            <rdf:Description rdf:about="#R_MAR07219">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.8.2.-"/>
@@ -244517,19 +244521,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02084g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02682g" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM02084g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02682g" stoichiometry="3" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039g" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM02085g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02681g" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM02039g" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM02085g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02681g" stoichiometry="3" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Hs6st"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07220" sboTerm="SBO:0000176" id="MAR07220" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07220" sboTerm="SBO:0000176" id="R_MAR07220" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -244537,7 +244541,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07220">
+            <rdf:Description rdf:about="#R_MAR07220">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.8.2.23"/>
@@ -244550,16 +244554,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02085g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02682g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02085g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02682g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02086g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02681g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02086g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02681g" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07221" sboTerm="SBO:0000176" id="MAR07221" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07221" sboTerm="SBO:0000176" id="R_MAR07221" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -244567,7 +244571,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07221">
+            <rdf:Description rdf:about="#R_MAR07221">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.8.2.23"/>
@@ -244581,16 +244585,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02086g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02682g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02086g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02682g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02087g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02681g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02087g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02681g" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07222" sboTerm="SBO:0000176" id="MAR07222" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07222" sboTerm="SBO:0000176" id="R_MAR07222" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -244598,7 +244602,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07222">
+            <rdf:Description rdf:about="#R_MAR07222">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.8.2.23"/>
@@ -244612,16 +244616,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02087g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02682g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02087g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02682g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02054g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02681g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02054g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02681g" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07490" sboTerm="SBO:0000176" id="MAR07490" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07490" sboTerm="SBO:0000176" id="R_MAR07490" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -244629,7 +244633,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07490">
+            <rdf:Description rdf:about="#R_MAR07490">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/S4T4g"/>
@@ -244641,16 +244645,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01532g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02682g" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01532g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02682g" stoichiometry="2" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01563g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039g" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02681g" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01563g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039g" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02681g" stoichiometry="2" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07491" sboTerm="SBO:0000176" id="MAR07491" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07491" sboTerm="SBO:0000176" id="R_MAR07491" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -244658,7 +244662,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07491">
+            <rdf:Description rdf:about="#R_MAR07491">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.8.2.5"/>
@@ -244672,19 +244676,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01568g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02682g" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01568g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02682g" stoichiometry="2" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01518g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039g" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02681g" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01518g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039g" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02681g" stoichiometry="2" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG31743"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07492" sboTerm="SBO:0000176" id="MAR07492" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07492" sboTerm="SBO:0000176" id="R_MAR07492" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -244692,7 +244696,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07492">
+            <rdf:Description rdf:about="#R_MAR07492">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.8.2.17"/>
@@ -244705,19 +244709,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01518g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02682g" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01518g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02682g" stoichiometry="2" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01563g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039g" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02681g" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01563g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039g" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02681g" stoichiometry="2" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG31637"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07493" sboTerm="SBO:0000176" id="MAR07493" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07493" sboTerm="SBO:0000176" id="R_MAR07493" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -244725,7 +244729,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07493">
+            <rdf:Description rdf:about="#R_MAR07493">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.175"/>
@@ -244739,13 +244743,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01563g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03109g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01563g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03109g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01564g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01564g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106g" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -244754,7 +244758,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07494" sboTerm="SBO:0000176" id="MAR07494" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07494" sboTerm="SBO:0000176" id="R_MAR07494" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -244762,7 +244766,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07494">
+            <rdf:Description rdf:about="#R_MAR07494">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.226"/>
@@ -244775,13 +244779,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01564g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03111g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01564g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03111g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01565g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01565g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106g" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -244791,7 +244795,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07495" sboTerm="SBO:0000176" id="MAR07495" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07495" sboTerm="SBO:0000176" id="R_MAR07495" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -244799,7 +244803,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07495">
+            <rdf:Description rdf:about="#R_MAR07495">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.175"/>
@@ -244813,13 +244817,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01518g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03109g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01518g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03109g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01515g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01515g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106g" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -244828,7 +244832,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07496" sboTerm="SBO:0000176" id="MAR07496" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07496" sboTerm="SBO:0000176" id="R_MAR07496" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -244836,7 +244840,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07496">
+            <rdf:Description rdf:about="#R_MAR07496">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.226"/>
@@ -244849,13 +244853,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01515g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03111g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01515g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03111g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01516g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01516g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106g" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -244865,7 +244869,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07497" sboTerm="SBO:0000176" id="MAR07497" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07497" sboTerm="SBO:0000176" id="R_MAR07497" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -244873,7 +244877,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07497">
+            <rdf:Description rdf:about="#R_MAR07497">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GLCAE1g"/>
@@ -244885,13 +244889,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01516g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01516g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01530g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01530g" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07498" sboTerm="SBO:0000176" id="MAR07498" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07498" sboTerm="SBO:0000176" id="R_MAR07498" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -244899,7 +244903,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07498">
+            <rdf:Description rdf:about="#R_MAR07498">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/S4T2g"/>
@@ -244911,19 +244915,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01516g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02682g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01516g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02682g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01517g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02681g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01517g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02681g" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG31743"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07509" sboTerm="SBO:0000176" id="MAR07509" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07509" sboTerm="SBO:0000176" id="R_MAR07509" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -244931,7 +244935,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07509">
+            <rdf:Description rdf:about="#R_MAR07509">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.8.2.5"/>
@@ -244945,19 +244949,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01530g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02682g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01530g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02682g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01531g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02681g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01531g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02681g" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG31743"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07510" sboTerm="SBO:0000176" id="MAR07510" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07510" sboTerm="SBO:0000176" id="R_MAR07510" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -244965,7 +244969,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07510">
+            <rdf:Description rdf:about="#R_MAR07510">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/5.1.3.19"/>
@@ -244979,19 +244983,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01531g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02682g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01531g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02682g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01525g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02681g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01525g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02681g" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="pip"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07519" sboTerm="SBO:0000176" id="MAR07519" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07519" sboTerm="SBO:0000176" id="R_MAR07519" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -244999,7 +245003,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07519">
+            <rdf:Description rdf:about="#R_MAR07519">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.8.2.17"/>
@@ -245013,19 +245017,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01568g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02682g" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01568g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02682g" stoichiometry="2" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01532g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039g" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02681g" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01532g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039g" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02681g" stoichiometry="2" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG31637"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07520" sboTerm="SBO:0000176" id="MAR07520" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07520" sboTerm="SBO:0000176" id="R_MAR07520" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -245033,7 +245037,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07520">
+            <rdf:Description rdf:about="#R_MAR07520">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.175"/>
@@ -245047,13 +245051,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01532g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03109g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01532g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03109g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01540g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01540g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106g" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -245062,7 +245066,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07521" sboTerm="SBO:0000176" id="MAR07521" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07521" sboTerm="SBO:0000176" id="R_MAR07521" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -245070,7 +245074,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07521">
+            <rdf:Description rdf:about="#R_MAR07521">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.226"/>
@@ -245083,13 +245087,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01540g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03111g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01540g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03111g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01541g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01541g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106g" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -245099,7 +245103,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07522" sboTerm="SBO:0000176" id="MAR07522" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07522" sboTerm="SBO:0000176" id="R_MAR07522" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -245107,7 +245111,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07522">
+            <rdf:Description rdf:about="#R_MAR07522">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.8.2.17"/>
@@ -245121,19 +245125,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01541g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02682g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01541g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02682g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01533g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02681g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01533g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02681g" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG31637"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07534" sboTerm="SBO:0000176" id="MAR07534" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07534" sboTerm="SBO:0000176" id="R_MAR07534" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -245141,7 +245145,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07534">
+            <rdf:Description rdf:about="#R_MAR07534">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.8.2.-"/>
@@ -245154,19 +245158,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01532g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02682g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01532g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02682g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01542g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02681g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01542g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02681g" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="pip"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07535" sboTerm="SBO:0000176" id="MAR07535" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07535" sboTerm="SBO:0000176" id="R_MAR07535" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -245174,7 +245178,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07535">
+            <rdf:Description rdf:about="#R_MAR07535">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.175"/>
@@ -245188,13 +245192,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01542g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03109g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01542g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03109g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01551g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01551g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106g" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -245203,7 +245207,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07536" sboTerm="SBO:0000176" id="MAR07536" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07536" sboTerm="SBO:0000176" id="R_MAR07536" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -245211,7 +245215,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07536">
+            <rdf:Description rdf:about="#R_MAR07536">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.226"/>
@@ -245224,13 +245228,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01551g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03111g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01551g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03111g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01552g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01552g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106g" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -245240,7 +245244,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07537" sboTerm="SBO:0000176" id="MAR07537" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07537" sboTerm="SBO:0000176" id="R_MAR07537" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -245248,7 +245252,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07537">
+            <rdf:Description rdf:about="#R_MAR07537">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.8.2.17"/>
@@ -245262,19 +245266,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01552g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02682g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01552g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02682g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01553g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02681g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01553g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02681g" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG31637"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07538" sboTerm="SBO:0000176" id="MAR07538" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07538" sboTerm="SBO:0000176" id="R_MAR07538" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -245282,7 +245286,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07538">
+            <rdf:Description rdf:about="#R_MAR07538">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.8.2.-"/>
@@ -245295,19 +245299,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01553g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02682g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01553g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02682g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01543g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02681g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01543g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02681g" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="pip"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07551" sboTerm="SBO:0000176" id="MAR07551" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07551" sboTerm="SBO:0000176" id="R_MAR07551" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -245315,7 +245319,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07551">
+            <rdf:Description rdf:about="#R_MAR07551">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/S4T3g"/>
@@ -245327,19 +245331,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01565g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02682g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01565g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02682g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01566g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02681g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01566g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02681g" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG31743"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07552" sboTerm="SBO:0000176" id="MAR07552" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07552" sboTerm="SBO:0000176" id="R_MAR07552" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -245347,7 +245351,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07552">
+            <rdf:Description rdf:about="#R_MAR07552">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.8.2.17"/>
@@ -245361,19 +245365,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01565g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02682g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01565g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02682g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01567g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02681g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01567g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02681g" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG31637"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07553" sboTerm="SBO:0000176" id="MAR07553" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07553" sboTerm="SBO:0000176" id="R_MAR07553" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -245381,7 +245385,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07553">
+            <rdf:Description rdf:about="#R_MAR07553">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.8.2.17"/>
@@ -245394,19 +245398,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01566g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02682g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01566g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02682g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01554g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02681g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01554g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02681g" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG31637"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07554" sboTerm="SBO:0000176" id="MAR07554" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07554" sboTerm="SBO:0000176" id="R_MAR07554" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -245415,7 +245419,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07554">
+            <rdf:Description rdf:about="#R_MAR07554">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/S4T5g"/>
@@ -245427,16 +245431,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01567g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02682g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01567g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02682g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01554g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02681g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01554g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02681g" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07501" sboTerm="SBO:0000176" id="MAR07501" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07501" sboTerm="SBO:0000176" id="R_MAR07501" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -245444,7 +245448,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07501">
+            <rdf:Description rdf:about="#R_MAR07501">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CSAPASEly"/>
@@ -245456,15 +245460,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01517l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01517l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00205l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01524l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00205l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01524l" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07502" sboTerm="SBO:0000176" id="MAR07502" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07502" sboTerm="SBO:0000176" id="R_MAR07502" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -245472,7 +245476,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07502">
+            <rdf:Description rdf:about="#R_MAR07502">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.6.12"/>
@@ -245485,13 +245489,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01524l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01524l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01519l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02946l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01519l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02946l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -245501,7 +245505,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07503" sboTerm="SBO:0000176" id="MAR07503" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07503" sboTerm="SBO:0000176" id="R_MAR07503" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -245509,7 +245513,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07503">
+            <rdf:Description rdf:about="#R_MAR07503">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.2.1.35"/>
@@ -245523,14 +245527,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01524l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040l" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01524l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="2" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01520l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02525l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02946l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01520l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02525l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02946l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -245541,7 +245545,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07504" sboTerm="SBO:0000176" id="MAR07504" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07504" sboTerm="SBO:0000176" id="R_MAR07504" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -245549,7 +245553,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07504">
+            <rdf:Description rdf:about="#R_MAR07504">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.2.1.52"/>
@@ -245562,12 +245566,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01519l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01519l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01520l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02525l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01520l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02525l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -245578,7 +245582,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07505" sboTerm="SBO:0000176" id="MAR07505" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07505" sboTerm="SBO:0000176" id="R_MAR07505" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -245586,7 +245590,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07505">
+            <rdf:Description rdf:about="#R_MAR07505">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.2.1.31"/>
@@ -245599,12 +245603,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01520l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01520l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01521l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01973l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01521l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01973l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -245613,7 +245617,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07506" sboTerm="SBO:0000176" id="MAR07506" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07506" sboTerm="SBO:0000176" id="R_MAR07506" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -245621,7 +245625,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07506">
+            <rdf:Description rdf:about="#R_MAR07506">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.6.12"/>
@@ -245634,13 +245638,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01521l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01521l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01522l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02946l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01522l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02946l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -245650,7 +245654,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07507" sboTerm="SBO:0000176" id="MAR07507" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07507" sboTerm="SBO:0000176" id="R_MAR07507" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -245658,7 +245662,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07507">
+            <rdf:Description rdf:about="#R_MAR07507">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.2.1.35"/>
@@ -245672,12 +245676,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01522l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01522l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01523l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02525l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01523l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02525l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -245688,7 +245692,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07508" sboTerm="SBO:0000176" id="MAR07508" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07508" sboTerm="SBO:0000176" id="R_MAR07508" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -245696,7 +245700,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07508">
+            <rdf:Description rdf:about="#R_MAR07508">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/LINKDEG2ly"/>
@@ -245708,18 +245712,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01523l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040l" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM01523l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="4" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01758l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01910l" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM01973l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02946l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01758l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01910l" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01973l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02946l" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07513" sboTerm="SBO:0000176" id="MAR07513" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07513" sboTerm="SBO:0000176" id="R_MAR07513" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -245727,7 +245731,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07513">
+            <rdf:Description rdf:about="#R_MAR07513">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CSBPASEly"/>
@@ -245739,15 +245743,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01525l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01525l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00205l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01529l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00205l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01529l" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07514" sboTerm="SBO:0000176" id="MAR07514" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07514" sboTerm="SBO:0000176" id="R_MAR07514" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -245755,7 +245759,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07514">
+            <rdf:Description rdf:about="#R_MAR07514">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.6.12"/>
@@ -245768,13 +245772,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01529l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01529l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01526l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02946l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01526l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02946l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -245784,7 +245788,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07515" sboTerm="SBO:0000176" id="MAR07515" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07515" sboTerm="SBO:0000176" id="R_MAR07515" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -245792,7 +245796,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07515">
+            <rdf:Description rdf:about="#R_MAR07515">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.2.1.35"/>
@@ -245806,14 +245810,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01529l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040l" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01529l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="2" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01527l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02525l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02946l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01527l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02525l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02946l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -245824,7 +245828,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07516" sboTerm="SBO:0000176" id="MAR07516" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07516" sboTerm="SBO:0000176" id="R_MAR07516" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -245832,7 +245836,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07516">
+            <rdf:Description rdf:about="#R_MAR07516">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.2.1.52"/>
@@ -245845,12 +245849,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01526l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01526l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01527l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02525l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01527l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02525l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -245861,7 +245865,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07517" sboTerm="SBO:0000176" id="MAR07517" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07517" sboTerm="SBO:0000176" id="R_MAR07517" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -245869,7 +245873,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07517">
+            <rdf:Description rdf:about="#R_MAR07517">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.6.13"/>
@@ -245882,19 +245886,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01527l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01527l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01528l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02946l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01528l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02946l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Ids"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07518" sboTerm="SBO:0000176" id="MAR07518" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07518" sboTerm="SBO:0000176" id="R_MAR07518" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -245902,7 +245906,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07518">
+            <rdf:Description rdf:about="#R_MAR07518">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.2.1.76"/>
@@ -245915,18 +245919,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01528l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01528l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01521l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02384l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01521l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02384l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Idua"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07525" sboTerm="SBO:0000176" id="MAR07525" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07525" sboTerm="SBO:0000176" id="R_MAR07525" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -245934,7 +245938,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07525">
+            <rdf:Description rdf:about="#R_MAR07525">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CSCPASEly"/>
@@ -245946,15 +245950,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01533l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01533l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00205l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01539l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00205l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01539l" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07526" sboTerm="SBO:0000176" id="MAR07526" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07526" sboTerm="SBO:0000176" id="R_MAR07526" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -245962,7 +245966,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07526">
+            <rdf:Description rdf:about="#R_MAR07526">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.6.4"/>
@@ -245978,19 +245982,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01539l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01539l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01534l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02946l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01534l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02946l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Ect3"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07527" sboTerm="SBO:0000176" id="MAR07527" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07527" sboTerm="SBO:0000176" id="R_MAR07527" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -245998,7 +246002,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07527">
+            <rdf:Description rdf:about="#R_MAR07527">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.2.1.52"/>
@@ -246011,14 +246015,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01539l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040l" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01539l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="2" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01535l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02525l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02946l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01535l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02525l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02946l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -246029,7 +246033,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07528" sboTerm="SBO:0000176" id="MAR07528" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07528" sboTerm="SBO:0000176" id="R_MAR07528" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -246037,7 +246041,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07528">
+            <rdf:Description rdf:about="#R_MAR07528">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.2.1.52"/>
@@ -246050,12 +246054,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01534l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01534l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01535l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02525l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01535l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02525l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -246066,7 +246070,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07529" sboTerm="SBO:0000176" id="MAR07529" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07529" sboTerm="SBO:0000176" id="R_MAR07529" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -246074,7 +246078,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07529">
+            <rdf:Description rdf:about="#R_MAR07529">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.2.1.31"/>
@@ -246087,12 +246091,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01535l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01535l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01536l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01973l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01536l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01973l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -246101,7 +246105,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07530" sboTerm="SBO:0000176" id="MAR07530" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07530" sboTerm="SBO:0000176" id="R_MAR07530" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -246109,7 +246113,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07530">
+            <rdf:Description rdf:about="#R_MAR07530">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.6.4"/>
@@ -246125,19 +246129,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01536l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01536l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01537l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02946l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01537l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02946l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Ect3"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07531" sboTerm="SBO:0000176" id="MAR07531" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07531" sboTerm="SBO:0000176" id="R_MAR07531" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -246145,7 +246149,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07531">
+            <rdf:Description rdf:about="#R_MAR07531">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.2.1.52"/>
@@ -246158,14 +246162,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01536l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040l" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01536l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="2" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01538l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02525l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02946l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01538l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02525l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02946l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -246176,7 +246180,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07532" sboTerm="SBO:0000176" id="MAR07532" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07532" sboTerm="SBO:0000176" id="R_MAR07532" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -246184,7 +246188,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07532">
+            <rdf:Description rdf:about="#R_MAR07532">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.2.1.52"/>
@@ -246197,12 +246201,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01537l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01537l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01538l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02525l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01538l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02525l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -246213,7 +246217,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07533" sboTerm="SBO:0000176" id="MAR07533" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07533" sboTerm="SBO:0000176" id="R_MAR07533" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -246221,7 +246225,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07533">
+            <rdf:Description rdf:about="#R_MAR07533">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/LINKDEG3ly"/>
@@ -246233,18 +246237,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01538l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040l" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM01538l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="4" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01758l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01910l" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM01973l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02946l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01758l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01910l" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01973l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02946l" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07541" sboTerm="SBO:0000176" id="MAR07541" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07541" sboTerm="SBO:0000176" id="R_MAR07541" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -246252,7 +246256,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07541">
+            <rdf:Description rdf:about="#R_MAR07541">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CSDPASEly"/>
@@ -246264,15 +246268,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01543l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01543l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00205l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01550l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00205l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01550l" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07542" sboTerm="SBO:0000176" id="MAR07542" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07542" sboTerm="SBO:0000176" id="R_MAR07542" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -246280,7 +246284,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07542">
+            <rdf:Description rdf:about="#R_MAR07542">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.6.4"/>
@@ -246296,19 +246300,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01550l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01550l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01544l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02946l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01544l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02946l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Ect3"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07543" sboTerm="SBO:0000176" id="MAR07543" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07543" sboTerm="SBO:0000176" id="R_MAR07543" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -246316,7 +246320,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07543">
+            <rdf:Description rdf:about="#R_MAR07543">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.2.1.52"/>
@@ -246329,14 +246333,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01550l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040l" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01550l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="2" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01545l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02525l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02946l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01545l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02525l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02946l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -246347,7 +246351,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07544" sboTerm="SBO:0000176" id="MAR07544" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07544" sboTerm="SBO:0000176" id="R_MAR07544" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -246355,7 +246359,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07544">
+            <rdf:Description rdf:about="#R_MAR07544">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.2.1.52"/>
@@ -246368,12 +246372,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01544l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01544l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01545l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02525l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01545l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02525l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -246384,7 +246388,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07545" sboTerm="SBO:0000176" id="MAR07545" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07545" sboTerm="SBO:0000176" id="R_MAR07545" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -246392,7 +246396,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07545">
+            <rdf:Description rdf:about="#R_MAR07545">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/S2TASE4ly"/>
@@ -246404,16 +246408,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01545l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01545l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01546l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02946l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01546l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02946l" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07546" sboTerm="SBO:0000176" id="MAR07546" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07546" sboTerm="SBO:0000176" id="R_MAR07546" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -246421,7 +246425,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07546">
+            <rdf:Description rdf:about="#R_MAR07546">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.2.1.31"/>
@@ -246434,12 +246438,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01546l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01546l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01547l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01973l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01547l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01973l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -246448,7 +246452,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07547" sboTerm="SBO:0000176" id="MAR07547" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07547" sboTerm="SBO:0000176" id="R_MAR07547" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -246456,7 +246460,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07547">
+            <rdf:Description rdf:about="#R_MAR07547">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.6.4"/>
@@ -246472,19 +246476,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01547l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01547l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01548l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02946l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01548l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02946l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Ect3"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07548" sboTerm="SBO:0000176" id="MAR07548" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07548" sboTerm="SBO:0000176" id="R_MAR07548" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -246492,7 +246496,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07548">
+            <rdf:Description rdf:about="#R_MAR07548">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.2.1.52"/>
@@ -246505,14 +246509,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01547l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040l" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01547l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="2" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01549l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02525l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02946l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01549l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02525l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02946l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -246523,7 +246527,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07549" sboTerm="SBO:0000176" id="MAR07549" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07549" sboTerm="SBO:0000176" id="R_MAR07549" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -246531,7 +246535,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07549">
+            <rdf:Description rdf:about="#R_MAR07549">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.2.1.52"/>
@@ -246544,12 +246548,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01548l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01548l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01549l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02525l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01549l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02525l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -246560,7 +246564,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07550" sboTerm="SBO:0000176" id="MAR07550" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07550" sboTerm="SBO:0000176" id="R_MAR07550" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -246568,7 +246572,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07550">
+            <rdf:Description rdf:about="#R_MAR07550">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/S2TASE5ly"/>
@@ -246580,16 +246584,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01549l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01549l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01538l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02946l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01538l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02946l" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07557" sboTerm="SBO:0000176" id="MAR07557" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07557" sboTerm="SBO:0000176" id="R_MAR07557" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -246597,7 +246601,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07557">
+            <rdf:Description rdf:about="#R_MAR07557">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CSEPASEly"/>
@@ -246609,15 +246613,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01554l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01554l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00205l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01562l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00205l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01562l" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07558" sboTerm="SBO:0000176" id="MAR07558" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07558" sboTerm="SBO:0000176" id="R_MAR07558" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -246625,7 +246629,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07558">
+            <rdf:Description rdf:about="#R_MAR07558">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.6.12"/>
@@ -246638,13 +246642,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01562l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01562l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01555l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02946l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01555l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02946l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -246654,7 +246658,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07559" sboTerm="SBO:0000176" id="MAR07559" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07559" sboTerm="SBO:0000176" id="R_MAR07559" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -246662,7 +246666,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07559">
+            <rdf:Description rdf:about="#R_MAR07559">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.2.1.35"/>
@@ -246676,14 +246680,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01562l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040l" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM01562l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="3" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01557l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039l" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02525l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02946l" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01557l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039l" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02525l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02946l" stoichiometry="2" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -246694,7 +246698,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07560" sboTerm="SBO:0000176" id="MAR07560" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07560" sboTerm="SBO:0000176" id="R_MAR07560" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -246702,7 +246706,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07560">
+            <rdf:Description rdf:about="#R_MAR07560">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.6.4"/>
@@ -246718,19 +246722,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01555l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01555l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01556l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02946l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01556l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02946l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Ect3"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07561" sboTerm="SBO:0000176" id="MAR07561" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07561" sboTerm="SBO:0000176" id="R_MAR07561" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -246738,7 +246742,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07561">
+            <rdf:Description rdf:about="#R_MAR07561">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.2.1.52"/>
@@ -246751,12 +246755,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01556l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01556l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01557l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02525l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01557l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02525l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -246767,7 +246771,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07562" sboTerm="SBO:0000176" id="MAR07562" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07562" sboTerm="SBO:0000176" id="R_MAR07562" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -246775,7 +246779,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07562">
+            <rdf:Description rdf:about="#R_MAR07562">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.2.1.31"/>
@@ -246788,12 +246792,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01557l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01557l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01558l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01973l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01558l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01973l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -246802,7 +246806,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07563" sboTerm="SBO:0000176" id="MAR07563" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07563" sboTerm="SBO:0000176" id="R_MAR07563" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -246810,7 +246814,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07563">
+            <rdf:Description rdf:about="#R_MAR07563">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.2.1.52"/>
@@ -246823,14 +246827,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01558l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040l" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM01558l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="3" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01561l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039l" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02525l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02946l" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01561l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039l" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02525l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02946l" stoichiometry="2" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -246841,7 +246845,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07564" sboTerm="SBO:0000176" id="MAR07564" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07564" sboTerm="SBO:0000176" id="R_MAR07564" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -246849,7 +246853,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07564">
+            <rdf:Description rdf:about="#R_MAR07564">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.6.12"/>
@@ -246862,13 +246866,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01558l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01558l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01559l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02946l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01559l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02946l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -246878,7 +246882,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07565" sboTerm="SBO:0000176" id="MAR07565" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07565" sboTerm="SBO:0000176" id="R_MAR07565" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -246886,7 +246890,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07565">
+            <rdf:Description rdf:about="#R_MAR07565">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.4.16.5"/>
@@ -246902,19 +246906,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01559l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01559l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01560l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02946l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01560l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02946l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Ect3"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07566" sboTerm="SBO:0000176" id="MAR07566" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07566" sboTerm="SBO:0000176" id="R_MAR07566" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -246922,7 +246926,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07566">
+            <rdf:Description rdf:about="#R_MAR07566">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.2.1.52"/>
@@ -246935,12 +246939,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01560l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01560l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01561l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02525l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01561l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02525l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -246951,7 +246955,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07567" sboTerm="SBO:0000176" id="MAR07567" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07567" sboTerm="SBO:0000176" id="R_MAR07567" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -246959,7 +246963,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07567">
+            <rdf:Description rdf:about="#R_MAR07567">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/LINKDEG4ly"/>
@@ -246971,18 +246975,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01561l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040l" stoichiometry="5" constant="true"/>
+          <speciesReference species="M_MAM01561l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="5" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01758l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01910l" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM01973l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039l" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02946l" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01758l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01910l" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01973l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039l" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02946l" stoichiometry="2" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07225" sboTerm="SBO:0000176" id="MAR07225" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07225" sboTerm="SBO:0000176" id="R_MAR07225" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -246990,7 +246994,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07225">
+            <rdf:Description rdf:about="#R_MAR07225">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.2.1.166"/>
@@ -247003,18 +247007,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02054l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02054l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00205l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02080l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00205l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02080l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG14309"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07226" sboTerm="SBO:0000176" id="MAR07226" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07226" sboTerm="SBO:0000176" id="R_MAR07226" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -247022,7 +247026,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07226">
+            <rdf:Description rdf:about="#R_MAR07226">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.6.14"/>
@@ -247035,19 +247039,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02080l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02080l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02055l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02946l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02055l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02946l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG18278"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07227" sboTerm="SBO:0000176" id="MAR07227" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07227" sboTerm="SBO:0000176" id="R_MAR07227" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -247055,7 +247059,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07227">
+            <rdf:Description rdf:about="#R_MAR07227">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.10.1.1"/>
@@ -247068,19 +247072,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02055l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02055l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02066l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02946l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02066l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02946l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Sgsh"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07228" sboTerm="SBO:0000176" id="MAR07228" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07228" sboTerm="SBO:0000176" id="R_MAR07228" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -247088,7 +247092,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07228">
+            <rdf:Description rdf:about="#R_MAR07228">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.78"/>
@@ -247101,19 +247105,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01261c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02066l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02066l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02073l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02073l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG6903"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07229" sboTerm="SBO:0000176" id="MAR07229" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07229" sboTerm="SBO:0000176" id="R_MAR07229" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -247121,7 +247125,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07229">
+            <rdf:Description rdf:about="#R_MAR07229">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.2.1.50"/>
@@ -247134,18 +247138,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02073l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02073l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02074l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02527l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02074l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02527l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG13397"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07230" sboTerm="SBO:0000176" id="MAR07230" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07230" sboTerm="SBO:0000176" id="R_MAR07230" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -247153,7 +247157,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07230">
+            <rdf:Description rdf:about="#R_MAR07230">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.2.1.76"/>
@@ -247166,18 +247170,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02074l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02074l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02075l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02384l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02075l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02384l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Idua"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07231" sboTerm="SBO:0000176" id="MAR07231" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07231" sboTerm="SBO:0000176" id="R_MAR07231" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -247185,7 +247189,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07231">
+            <rdf:Description rdf:about="#R_MAR07231">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.6.14"/>
@@ -247198,19 +247202,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02075l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02075l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02076l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02946l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02076l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02946l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG18278"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07232" sboTerm="SBO:0000176" id="MAR07232" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07232" sboTerm="SBO:0000176" id="R_MAR07232" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -247218,7 +247222,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07232">
+            <rdf:Description rdf:about="#R_MAR07232">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.10.1.1"/>
@@ -247231,19 +247235,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02076l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02076l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02077l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02946l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02077l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02946l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Sgsh"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07233" sboTerm="SBO:0000176" id="MAR07233" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07233" sboTerm="SBO:0000176" id="R_MAR07233" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -247251,7 +247255,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07233">
+            <rdf:Description rdf:about="#R_MAR07233">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.78"/>
@@ -247264,19 +247268,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01261c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02077l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02077l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02078l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02078l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG6903"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07234" sboTerm="SBO:0000176" id="MAR07234" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07234" sboTerm="SBO:0000176" id="R_MAR07234" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -247284,7 +247288,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07234">
+            <rdf:Description rdf:about="#R_MAR07234">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.2.1.50"/>
@@ -247297,18 +247301,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02078l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02078l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02079l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02527l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02079l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02527l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG13397"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07235" sboTerm="SBO:0000176" id="MAR07235" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07235" sboTerm="SBO:0000176" id="R_MAR07235" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -247316,7 +247320,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07235">
+            <rdf:Description rdf:about="#R_MAR07235">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.2.1.31"/>
@@ -247329,12 +247333,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02079l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02079l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01973l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02056l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01973l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02056l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -247343,7 +247347,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07236" sboTerm="SBO:0000176" id="MAR07236" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07236" sboTerm="SBO:0000176" id="R_MAR07236" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -247351,7 +247355,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07236">
+            <rdf:Description rdf:about="#R_MAR07236">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/S3TASE1ly"/>
@@ -247363,16 +247367,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02056l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02056l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02057l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02946l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02057l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02946l" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07237" sboTerm="SBO:0000176" id="MAR07237" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07237" sboTerm="SBO:0000176" id="R_MAR07237" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -247380,7 +247384,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07237">
+            <rdf:Description rdf:about="#R_MAR07237">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.6.14"/>
@@ -247393,19 +247397,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02057l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02057l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02058l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02946l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02058l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02946l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG18278"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07238" sboTerm="SBO:0000176" id="MAR07238" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07238" sboTerm="SBO:0000176" id="R_MAR07238" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -247413,7 +247417,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07238">
+            <rdf:Description rdf:about="#R_MAR07238">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.10.1.1"/>
@@ -247426,19 +247430,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02058l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02058l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02059l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02946l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02059l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02946l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Sgsh"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07239" sboTerm="SBO:0000176" id="MAR07239" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07239" sboTerm="SBO:0000176" id="R_MAR07239" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -247446,7 +247450,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07239">
+            <rdf:Description rdf:about="#R_MAR07239">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.78"/>
@@ -247459,19 +247463,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01261c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02059l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02059l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02060l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02060l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG6903"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07240" sboTerm="SBO:0000176" id="MAR07240" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07240" sboTerm="SBO:0000176" id="R_MAR07240" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -247479,7 +247483,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07240">
+            <rdf:Description rdf:about="#R_MAR07240">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.2.1.50"/>
@@ -247492,18 +247496,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02060l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02060l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02061l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02527l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02061l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02527l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG13397"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07241" sboTerm="SBO:0000176" id="MAR07241" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07241" sboTerm="SBO:0000176" id="R_MAR07241" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -247511,7 +247515,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07241">
+            <rdf:Description rdf:about="#R_MAR07241">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.6.13"/>
@@ -247524,19 +247528,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02061l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02061l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02062l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02946l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02062l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02946l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Ids"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07242" sboTerm="SBO:0000176" id="MAR07242" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07242" sboTerm="SBO:0000176" id="R_MAR07242" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -247544,7 +247548,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07242">
+            <rdf:Description rdf:about="#R_MAR07242">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.2.1.76"/>
@@ -247557,18 +247561,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02062l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02062l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02063l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02384l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02063l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02384l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Idua"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07243" sboTerm="SBO:0000176" id="MAR07243" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07243" sboTerm="SBO:0000176" id="R_MAR07243" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -247576,7 +247580,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07243">
+            <rdf:Description rdf:about="#R_MAR07243">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/S3TASE2ly"/>
@@ -247588,16 +247592,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02063l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02063l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02064l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02946l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02064l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02946l" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07244" sboTerm="SBO:0000176" id="MAR07244" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07244" sboTerm="SBO:0000176" id="R_MAR07244" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -247605,7 +247609,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07244">
+            <rdf:Description rdf:about="#R_MAR07244">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.10.1.1"/>
@@ -247618,19 +247622,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02064l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02064l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02065l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02946l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02065l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02946l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Sgsh"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07245" sboTerm="SBO:0000176" id="MAR07245" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07245" sboTerm="SBO:0000176" id="R_MAR07245" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -247638,7 +247642,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07245">
+            <rdf:Description rdf:about="#R_MAR07245">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.78"/>
@@ -247651,19 +247655,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01261c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02065l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02065l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02067l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02067l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG6903"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07246" sboTerm="SBO:0000176" id="MAR07246" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07246" sboTerm="SBO:0000176" id="R_MAR07246" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -247671,7 +247675,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07246">
+            <rdf:Description rdf:about="#R_MAR07246">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.2.1.50"/>
@@ -247684,18 +247688,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02067l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02067l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02068l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02527l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02068l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02527l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG13397"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07247" sboTerm="SBO:0000176" id="MAR07247" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07247" sboTerm="SBO:0000176" id="R_MAR07247" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -247703,7 +247707,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07247">
+            <rdf:Description rdf:about="#R_MAR07247">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.6.13"/>
@@ -247716,19 +247720,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02068l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02068l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02069l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02946l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02069l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02946l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Ids"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07248" sboTerm="SBO:0000176" id="MAR07248" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07248" sboTerm="SBO:0000176" id="R_MAR07248" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -247736,7 +247740,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07248">
+            <rdf:Description rdf:about="#R_MAR07248">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.2.1.76"/>
@@ -247749,18 +247753,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02069l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02069l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02070l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02384l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02070l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02384l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Idua"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07249" sboTerm="SBO:0000176" id="MAR07249" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07249" sboTerm="SBO:0000176" id="R_MAR07249" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -247768,7 +247772,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07249">
+            <rdf:Description rdf:about="#R_MAR07249">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/S3TASE3ly"/>
@@ -247780,16 +247784,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02070l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02070l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02071l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02946l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02071l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02946l" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07250" sboTerm="SBO:0000176" id="MAR07250" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07250" sboTerm="SBO:0000176" id="R_MAR07250" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -247797,7 +247801,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07250">
+            <rdf:Description rdf:about="#R_MAR07250">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.2.1.50"/>
@@ -247810,18 +247814,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02071l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02071l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02072l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02527l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02072l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02527l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG13397"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07251" sboTerm="SBO:0000176" id="MAR07251" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07251" sboTerm="SBO:0000176" id="R_MAR07251" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -247829,7 +247833,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07251">
+            <rdf:Description rdf:about="#R_MAR07251">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/LINKDEG1ly"/>
@@ -247841,16 +247845,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040l" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM02072l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM02072l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01758l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01910l" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM01973l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01758l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01910l" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01973l" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07571" sboTerm="SBO:0000176" id="MAR07571" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07571" sboTerm="SBO:0000176" id="R_MAR07571" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -247858,7 +247862,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07571">
+            <rdf:Description rdf:about="#R_MAR07571">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.2.1.31"/>
@@ -247871,12 +247875,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02141l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02141l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01973l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02140l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01973l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02140l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -247885,7 +247889,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07572" sboTerm="SBO:0000176" id="MAR07572" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07572" sboTerm="SBO:0000176" id="R_MAR07572" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -247893,7 +247897,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07572">
+            <rdf:Description rdf:about="#R_MAR07572">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.2.1.52"/>
@@ -247906,12 +247910,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02140l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02140l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02139l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02527l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02139l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02527l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -247922,7 +247926,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07573" sboTerm="SBO:0000176" id="MAR07573" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07573" sboTerm="SBO:0000176" id="R_MAR07573" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -247930,7 +247934,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07573">
+            <rdf:Description rdf:about="#R_MAR07573">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GLCAASE9ly"/>
@@ -247942,18 +247946,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040l" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02139l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02139l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01973l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02527l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01973l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02527l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG15117"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07336" sboTerm="SBO:0000176" id="MAR07336" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07336" sboTerm="SBO:0000176" id="R_MAR07336" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -247961,7 +247965,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07336">
+            <rdf:Description rdf:about="#R_MAR07336">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/AG13T4g"/>
@@ -247973,13 +247977,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02201g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03111g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02201g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03111g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02212g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02212g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106g" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -247988,7 +247992,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07337" sboTerm="SBO:0000176" id="MAR07337" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07337" sboTerm="SBO:0000176" id="R_MAR07337" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -247996,7 +248000,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07337">
+            <rdf:Description rdf:about="#R_MAR07337">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/G14T6g"/>
@@ -248008,16 +248012,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02212g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03107g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02212g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03107g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02223g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02223g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106g" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07338" sboTerm="SBO:0000176" id="MAR07338" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07338" sboTerm="SBO:0000176" id="R_MAR07338" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -248025,7 +248029,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07338">
+            <rdf:Description rdf:about="#R_MAR07338">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/AG13T5g"/>
@@ -248037,13 +248041,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02223g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03111g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02223g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03111g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02231g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02231g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106g" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -248052,7 +248056,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07339" sboTerm="SBO:0000176" id="MAR07339" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07339" sboTerm="SBO:0000176" id="R_MAR07339" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -248060,7 +248064,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07339">
+            <rdf:Description rdf:about="#R_MAR07339">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.8.2.-"/>
@@ -248073,13 +248077,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02231g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02682g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02231g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02682g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02232g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02681g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02232g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02681g" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -248088,7 +248092,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07340" sboTerm="SBO:0000176" id="MAR07340" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07340" sboTerm="SBO:0000176" id="R_MAR07340" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -248096,7 +248100,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07340">
+            <rdf:Description rdf:about="#R_MAR07340">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/G14T7g"/>
@@ -248108,16 +248112,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02232g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03107g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02232g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03107g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02233g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02233g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106g" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07341" sboTerm="SBO:0000176" id="MAR07341" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07341" sboTerm="SBO:0000176" id="R_MAR07341" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -248125,7 +248129,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07341">
+            <rdf:Description rdf:about="#R_MAR07341">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/AG13T6g"/>
@@ -248137,13 +248141,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02233g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03111g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02233g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03111g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02234g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02234g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106g" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -248152,7 +248156,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07342" sboTerm="SBO:0000176" id="MAR07342" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07342" sboTerm="SBO:0000176" id="R_MAR07342" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -248160,7 +248164,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07342">
+            <rdf:Description rdf:about="#R_MAR07342">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.8.2.-"/>
@@ -248173,13 +248177,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02234g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02682g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02234g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02682g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02235g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02681g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02235g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02681g" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -248188,7 +248192,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07343" sboTerm="SBO:0000176" id="MAR07343" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07343" sboTerm="SBO:0000176" id="R_MAR07343" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -248196,7 +248200,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07343">
+            <rdf:Description rdf:about="#R_MAR07343">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/G14T8g"/>
@@ -248208,16 +248212,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02235g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03107g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02235g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03107g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02236g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02236g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106g" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07344" sboTerm="SBO:0000176" id="MAR07344" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07344" sboTerm="SBO:0000176" id="R_MAR07344" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -248225,7 +248229,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07344">
+            <rdf:Description rdf:about="#R_MAR07344">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/AG13T7g"/>
@@ -248237,13 +248241,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02236g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03111g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02236g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03111g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02202g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02202g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106g" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -248252,7 +248256,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07345" sboTerm="SBO:0000176" id="MAR07345" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07345" sboTerm="SBO:0000176" id="R_MAR07345" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -248260,7 +248264,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07345">
+            <rdf:Description rdf:about="#R_MAR07345">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.8.2.-"/>
@@ -248273,13 +248277,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02202g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02682g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02202g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02682g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02203g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02681g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02203g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02681g" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -248288,7 +248292,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07346" sboTerm="SBO:0000176" id="MAR07346" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07346" sboTerm="SBO:0000176" id="R_MAR07346" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -248296,7 +248300,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07346">
+            <rdf:Description rdf:about="#R_MAR07346">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/G14T9g"/>
@@ -248308,16 +248312,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02203g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03107g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02203g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03107g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02204g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02204g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106g" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07347" sboTerm="SBO:0000176" id="MAR07347" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07347" sboTerm="SBO:0000176" id="R_MAR07347" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -248325,7 +248329,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07347">
+            <rdf:Description rdf:about="#R_MAR07347">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/AG13T8g"/>
@@ -248337,13 +248341,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02204g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03111g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02204g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03111g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02205g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02205g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106g" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -248352,7 +248356,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07348" sboTerm="SBO:0000176" id="MAR07348" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07348" sboTerm="SBO:0000176" id="R_MAR07348" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -248360,7 +248364,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07348">
+            <rdf:Description rdf:about="#R_MAR07348">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.8.2.-"/>
@@ -248373,13 +248377,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02205g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02682g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02205g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02682g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02206g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02681g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02206g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02681g" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -248388,7 +248392,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07349" sboTerm="SBO:0000176" id="MAR07349" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07349" sboTerm="SBO:0000176" id="R_MAR07349" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -248396,7 +248400,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07349">
+            <rdf:Description rdf:about="#R_MAR07349">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/G14T10g"/>
@@ -248408,16 +248412,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02206g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03107g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02206g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03107g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02207g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02207g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106g" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07350" sboTerm="SBO:0000176" id="MAR07350" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07350" sboTerm="SBO:0000176" id="R_MAR07350" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -248425,7 +248429,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07350">
+            <rdf:Description rdf:about="#R_MAR07350">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/AG13T9g"/>
@@ -248437,13 +248441,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02207g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03111g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02207g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03111g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02208g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02208g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106g" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -248452,7 +248456,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07351" sboTerm="SBO:0000176" id="MAR07351" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07351" sboTerm="SBO:0000176" id="R_MAR07351" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -248460,7 +248464,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07351">
+            <rdf:Description rdf:about="#R_MAR07351">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.8.2.-"/>
@@ -248473,13 +248477,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02208g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02682g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02208g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02682g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02209g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02681g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02209g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02681g" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -248488,7 +248492,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07352" sboTerm="SBO:0000176" id="MAR07352" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07352" sboTerm="SBO:0000176" id="R_MAR07352" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -248496,7 +248500,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07352">
+            <rdf:Description rdf:about="#R_MAR07352">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/G14T11g"/>
@@ -248508,16 +248512,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02209g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03107g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02209g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03107g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02210g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02210g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106g" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07353" sboTerm="SBO:0000176" id="MAR07353" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07353" sboTerm="SBO:0000176" id="R_MAR07353" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -248525,7 +248529,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07353">
+            <rdf:Description rdf:about="#R_MAR07353">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/AG13T10g"/>
@@ -248537,13 +248541,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02210g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03111g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02210g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03111g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02211g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02211g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106g" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -248552,7 +248556,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07354" sboTerm="SBO:0000176" id="MAR07354" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07354" sboTerm="SBO:0000176" id="R_MAR07354" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -248560,7 +248564,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07354">
+            <rdf:Description rdf:about="#R_MAR07354">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.8.2.-"/>
@@ -248573,13 +248577,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02211g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02682g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02211g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02682g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02213g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02681g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02213g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02681g" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -248588,7 +248592,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07355" sboTerm="SBO:0000176" id="MAR07355" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07355" sboTerm="SBO:0000176" id="R_MAR07355" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -248596,7 +248600,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07355">
+            <rdf:Description rdf:about="#R_MAR07355">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/G14T12g"/>
@@ -248608,16 +248612,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02213g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03107g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02213g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03107g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02214g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02214g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106g" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07356" sboTerm="SBO:0000176" id="MAR07356" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07356" sboTerm="SBO:0000176" id="R_MAR07356" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -248625,7 +248629,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07356">
+            <rdf:Description rdf:about="#R_MAR07356">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/AG13T11g"/>
@@ -248637,13 +248641,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02214g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03111g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02214g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03111g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02215g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02215g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106g" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -248652,7 +248656,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07357" sboTerm="SBO:0000176" id="MAR07357" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07357" sboTerm="SBO:0000176" id="R_MAR07357" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -248660,7 +248664,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07357">
+            <rdf:Description rdf:about="#R_MAR07357">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.8.2.-"/>
@@ -248673,13 +248677,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02215g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02682g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02215g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02682g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02216g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02681g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02216g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02681g" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -248688,7 +248692,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07358" sboTerm="SBO:0000176" id="MAR07358" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07358" sboTerm="SBO:0000176" id="R_MAR07358" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -248696,7 +248700,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07358">
+            <rdf:Description rdf:about="#R_MAR07358">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/G14T13g"/>
@@ -248708,16 +248712,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02216g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03107g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02216g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03107g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02217g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02217g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106g" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07359" sboTerm="SBO:0000176" id="MAR07359" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07359" sboTerm="SBO:0000176" id="R_MAR07359" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -248725,7 +248729,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07359">
+            <rdf:Description rdf:about="#R_MAR07359">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/AG13T12g"/>
@@ -248737,13 +248741,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02217g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03111g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02217g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03111g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02218g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02218g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106g" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -248752,7 +248756,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07360" sboTerm="SBO:0000176" id="MAR07360" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07360" sboTerm="SBO:0000176" id="R_MAR07360" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -248760,7 +248764,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07360">
+            <rdf:Description rdf:about="#R_MAR07360">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.8.2.-"/>
@@ -248773,13 +248777,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02218g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02682g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02218g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02682g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02219g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02681g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02219g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02681g" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -248788,7 +248792,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07361" sboTerm="SBO:0000176" id="MAR07361" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07361" sboTerm="SBO:0000176" id="R_MAR07361" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -248796,7 +248800,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07361">
+            <rdf:Description rdf:about="#R_MAR07361">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/G14T14g"/>
@@ -248808,16 +248812,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02219g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03107g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02219g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03107g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02220g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02220g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106g" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07362" sboTerm="SBO:0000176" id="MAR07362" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07362" sboTerm="SBO:0000176" id="R_MAR07362" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -248825,7 +248829,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07362">
+            <rdf:Description rdf:about="#R_MAR07362">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/AG13T13g"/>
@@ -248837,13 +248841,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02220g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03111g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02220g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03111g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02221g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02221g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106g" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -248852,7 +248856,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07363" sboTerm="SBO:0000176" id="MAR07363" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07363" sboTerm="SBO:0000176" id="R_MAR07363" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -248860,7 +248864,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07363">
+            <rdf:Description rdf:about="#R_MAR07363">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.8.2.-"/>
@@ -248873,13 +248877,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02221g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02682g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02221g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02682g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02222g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02681g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02222g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02681g" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -248888,7 +248892,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07364" sboTerm="SBO:0000176" id="MAR07364" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07364" sboTerm="SBO:0000176" id="R_MAR07364" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -248896,7 +248900,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07364">
+            <rdf:Description rdf:about="#R_MAR07364">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/G14T15g"/>
@@ -248908,16 +248912,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02222g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03107g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02222g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03107g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02224g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02224g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106g" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07365" sboTerm="SBO:0000176" id="MAR07365" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07365" sboTerm="SBO:0000176" id="R_MAR07365" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -248925,7 +248929,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07365">
+            <rdf:Description rdf:about="#R_MAR07365">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/AG13T14g"/>
@@ -248937,13 +248941,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02224g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03111g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02224g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03111g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02225g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02225g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106g" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -248952,7 +248956,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07366" sboTerm="SBO:0000176" id="MAR07366" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07366" sboTerm="SBO:0000176" id="R_MAR07366" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -248960,7 +248964,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07366">
+            <rdf:Description rdf:about="#R_MAR07366">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.8.2.-"/>
@@ -248973,13 +248977,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02225g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02682g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02225g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02682g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02226g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02681g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02226g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02681g" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -248988,7 +248992,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07367" sboTerm="SBO:0000176" id="MAR07367" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07367" sboTerm="SBO:0000176" id="R_MAR07367" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -248996,7 +249000,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07367">
+            <rdf:Description rdf:about="#R_MAR07367">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/G14T16g"/>
@@ -249008,16 +249012,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02226g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03107g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02226g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03107g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02227g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02227g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106g" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07368" sboTerm="SBO:0000176" id="MAR07368" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07368" sboTerm="SBO:0000176" id="R_MAR07368" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -249025,7 +249029,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07368">
+            <rdf:Description rdf:about="#R_MAR07368">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/AG13T15g"/>
@@ -249037,13 +249041,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02227g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03111g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02227g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03111g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02228g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02228g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106g" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -249052,7 +249056,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07369" sboTerm="SBO:0000176" id="MAR07369" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07369" sboTerm="SBO:0000176" id="R_MAR07369" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -249060,7 +249064,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07369">
+            <rdf:Description rdf:about="#R_MAR07369">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.8.2.-"/>
@@ -249073,13 +249077,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02228g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02682g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02228g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02682g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02229g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02681g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02229g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02681g" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -249088,7 +249092,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07370" sboTerm="SBO:0000176" id="MAR07370" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07370" sboTerm="SBO:0000176" id="R_MAR07370" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -249096,7 +249100,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07370">
+            <rdf:Description rdf:about="#R_MAR07370">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/G14T17g"/>
@@ -249108,16 +249112,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02229g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03107g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02229g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03107g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02230g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02230g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106g" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07371" sboTerm="SBO:0000176" id="MAR07371" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07371" sboTerm="SBO:0000176" id="R_MAR07371" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -249125,7 +249129,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07371">
+            <rdf:Description rdf:about="#R_MAR07371">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.8.2.17"/>
@@ -249139,19 +249143,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02230g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02682g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02230g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02682g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02278g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02681g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02278g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02681g" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG31637"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07443" sboTerm="SBO:0000176" id="MAR07443" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07443" sboTerm="SBO:0000176" id="R_MAR07443" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -249159,7 +249163,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07443">
+            <rdf:Description rdf:about="#R_MAR07443">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/G14T2g"/>
@@ -249171,16 +249175,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02304g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03107g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02304g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03107g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02306g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02306g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106g" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07444" sboTerm="SBO:0000176" id="MAR07444" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07444" sboTerm="SBO:0000176" id="R_MAR07444" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -249188,7 +249192,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07444">
+            <rdf:Description rdf:about="#R_MAR07444">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/AG13T1g"/>
@@ -249200,13 +249204,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02306g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03111g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02306g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03111g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02307g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02307g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106g" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -249215,7 +249219,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07445" sboTerm="SBO:0000176" id="MAR07445" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07445" sboTerm="SBO:0000176" id="R_MAR07445" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -249223,7 +249227,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07445">
+            <rdf:Description rdf:about="#R_MAR07445">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/G14T3g"/>
@@ -249235,16 +249239,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02307g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03107g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02307g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03107g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02308g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02308g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106g" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07446" sboTerm="SBO:0000176" id="MAR07446" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07446" sboTerm="SBO:0000176" id="R_MAR07446" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -249252,7 +249256,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07446">
+            <rdf:Description rdf:about="#R_MAR07446">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/AG13T2g"/>
@@ -249264,13 +249268,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02308g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03111g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02308g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03111g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02309g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02309g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106g" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -249279,7 +249283,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07447" sboTerm="SBO:0000176" id="MAR07447" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07447" sboTerm="SBO:0000176" id="R_MAR07447" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -249287,7 +249291,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07447">
+            <rdf:Description rdf:about="#R_MAR07447">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.8.2.-"/>
@@ -249300,13 +249304,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02309g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02682g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02309g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02682g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02310g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02681g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02310g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02681g" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -249315,7 +249319,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07448" sboTerm="SBO:0000176" id="MAR07448" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07448" sboTerm="SBO:0000176" id="R_MAR07448" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -249323,7 +249327,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07448">
+            <rdf:Description rdf:about="#R_MAR07448">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/G14T4g"/>
@@ -249335,16 +249339,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02310g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03107g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02310g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03107g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02311g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02311g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106g" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07449" sboTerm="SBO:0000176" id="MAR07449" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07449" sboTerm="SBO:0000176" id="R_MAR07449" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -249352,7 +249356,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07449">
+            <rdf:Description rdf:about="#R_MAR07449">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/AG13T3g"/>
@@ -249364,13 +249368,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02311g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03111g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02311g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03111g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02312g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02312g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106g" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -249379,7 +249383,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07450" sboTerm="SBO:0000176" id="MAR07450" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07450" sboTerm="SBO:0000176" id="R_MAR07450" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -249387,7 +249391,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07450">
+            <rdf:Description rdf:about="#R_MAR07450">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.8.2.-"/>
@@ -249400,13 +249404,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02312g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02682g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02312g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02682g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02313g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02681g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02313g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02681g" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -249415,7 +249419,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07451" sboTerm="SBO:0000176" id="MAR07451" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07451" sboTerm="SBO:0000176" id="R_MAR07451" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -249423,7 +249427,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07451">
+            <rdf:Description rdf:about="#R_MAR07451">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/G14T5g"/>
@@ -249435,16 +249439,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02313g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03107g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02313g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03107g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02305g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02305g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106g" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07452" sboTerm="SBO:0000176" id="MAR07452" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07452" sboTerm="SBO:0000176" id="R_MAR07452" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -249452,7 +249456,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07452">
+            <rdf:Description rdf:about="#R_MAR07452">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.8.2.17"/>
@@ -249466,19 +249470,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02305g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02682g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02305g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02682g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02288g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02681g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02288g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02681g" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG31637"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07471" sboTerm="SBO:0000176" id="MAR07471" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07471" sboTerm="SBO:0000176" id="R_MAR07471" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -249486,7 +249490,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07471">
+            <rdf:Description rdf:about="#R_MAR07471">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/G14T18g"/>
@@ -249498,16 +249502,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01609g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03107g" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01609g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03107g" stoichiometry="2" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039g" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02289g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106g" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02039g" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02289g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106g" stoichiometry="2" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07473" sboTerm="SBO:0000176" id="MAR07473" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07473" sboTerm="SBO:0000176" id="R_MAR07473" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -249515,7 +249519,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07473">
+            <rdf:Description rdf:about="#R_MAR07473">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/AG13T16g"/>
@@ -249527,13 +249531,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02291g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03111g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02291g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03111g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02292g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02292g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106g" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -249542,7 +249546,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07474" sboTerm="SBO:0000176" id="MAR07474" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07474" sboTerm="SBO:0000176" id="R_MAR07474" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -249550,7 +249554,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07474">
+            <rdf:Description rdf:about="#R_MAR07474">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/G14T19g"/>
@@ -249562,16 +249566,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02292g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03107g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02292g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03107g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02293g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02293g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106g" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07475" sboTerm="SBO:0000176" id="MAR07475" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07475" sboTerm="SBO:0000176" id="R_MAR07475" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -249579,7 +249583,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07475">
+            <rdf:Description rdf:about="#R_MAR07475">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/AG13T17g"/>
@@ -249591,13 +249595,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02293g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03111g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02293g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03111g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02294g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02294g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106g" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -249606,7 +249610,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07476" sboTerm="SBO:0000176" id="MAR07476" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07476" sboTerm="SBO:0000176" id="R_MAR07476" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -249614,7 +249618,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07476">
+            <rdf:Description rdf:about="#R_MAR07476">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.8.2.-"/>
@@ -249627,13 +249631,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02294g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02682g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02294g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02682g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02295g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02681g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02295g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02681g" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -249642,7 +249646,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07477" sboTerm="SBO:0000176" id="MAR07477" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07477" sboTerm="SBO:0000176" id="R_MAR07477" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -249650,7 +249654,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07477">
+            <rdf:Description rdf:about="#R_MAR07477">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/G14T20g"/>
@@ -249662,16 +249666,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02295g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03107g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02295g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03107g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02296g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02296g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106g" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07478" sboTerm="SBO:0000176" id="MAR07478" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07478" sboTerm="SBO:0000176" id="R_MAR07478" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -249679,7 +249683,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07478">
+            <rdf:Description rdf:about="#R_MAR07478">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/AG13T18g"/>
@@ -249691,13 +249695,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02296g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03111g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02296g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03111g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02297g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02297g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106g" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -249706,7 +249710,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07479" sboTerm="SBO:0000176" id="MAR07479" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07479" sboTerm="SBO:0000176" id="R_MAR07479" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -249714,7 +249718,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07479">
+            <rdf:Description rdf:about="#R_MAR07479">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.8.2.-"/>
@@ -249727,13 +249731,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02297g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02682g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02297g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02682g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02298g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02681g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02298g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02681g" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -249742,7 +249746,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07480" sboTerm="SBO:0000176" id="MAR07480" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07480" sboTerm="SBO:0000176" id="R_MAR07480" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -249750,7 +249754,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07480">
+            <rdf:Description rdf:about="#R_MAR07480">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/G14T21g"/>
@@ -249762,16 +249766,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02298g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03107g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02298g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03107g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02290g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02290g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106g" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07481" sboTerm="SBO:0000176" id="MAR07481" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07481" sboTerm="SBO:0000176" id="R_MAR07481" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -249779,7 +249783,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07481">
+            <rdf:Description rdf:about="#R_MAR07481">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.8.2.17"/>
@@ -249793,19 +249797,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02290g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02682g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02290g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02682g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02303g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02681g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02303g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02681g" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG31637"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07373" sboTerm="SBO:0000176" id="MAR07373" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07373" sboTerm="SBO:0000176" id="R_MAR07373" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -249813,7 +249817,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07373">
+            <rdf:Description rdf:about="#R_MAR07373">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.2.1.51"/>
@@ -249826,18 +249830,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02278e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02278e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01159e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02237e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01159e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02237e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Fuca"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07375" sboTerm="SBO:0000176" id="MAR07375" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07375" sboTerm="SBO:0000176" id="R_MAR07375" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -249845,7 +249849,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07375">
+            <rdf:Description rdf:about="#R_MAR07375">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.2.1.51"/>
@@ -249858,18 +249862,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02278l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02278l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01159l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02237l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01159l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02237l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Fuca"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07376" sboTerm="SBO:0000176" id="MAR07376" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07376" sboTerm="SBO:0000176" id="R_MAR07376" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -249877,7 +249881,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07376">
+            <rdf:Description rdf:about="#R_MAR07376">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.5.1.26"/>
@@ -249890,18 +249894,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02237l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02237l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00198l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02248l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00198l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02248l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG1827"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07377" sboTerm="SBO:0000176" id="MAR07377" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07377" sboTerm="SBO:0000176" id="R_MAR07377" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -249909,7 +249913,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07377">
+            <rdf:Description rdf:about="#R_MAR07377">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.2.1.96"/>
@@ -249922,18 +249926,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02248l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02248l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02259l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02527l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02259l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02527l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG5613"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07378" sboTerm="SBO:0000176" id="MAR07378" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07378" sboTerm="SBO:0000176" id="R_MAR07378" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -249941,7 +249945,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07378">
+            <rdf:Description rdf:about="#R_MAR07378">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.6.4"/>
@@ -249957,18 +249961,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02259l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02259l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02270l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02543l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02270l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02543l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Ect3"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07379" sboTerm="SBO:0000176" id="MAR07379" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07379" sboTerm="SBO:0000176" id="R_MAR07379" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -249976,7 +249980,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07379">
+            <rdf:Description rdf:about="#R_MAR07379">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.6.4"/>
@@ -249992,19 +249996,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02270l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02270l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02273l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02946l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02273l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02946l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Ect3"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07380" sboTerm="SBO:0000176" id="MAR07380" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07380" sboTerm="SBO:0000176" id="R_MAR07380" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -250012,7 +250016,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07380">
+            <rdf:Description rdf:about="#R_MAR07380">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.6.4"/>
@@ -250028,18 +250032,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040l" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02273l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02273l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01910l" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02274l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01910l" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02274l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Ect3"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07381" sboTerm="SBO:0000176" id="MAR07381" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07381" sboTerm="SBO:0000176" id="R_MAR07381" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -250047,7 +250051,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07381">
+            <rdf:Description rdf:about="#R_MAR07381">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.6.14"/>
@@ -250060,19 +250064,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02274l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02274l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02275l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02946l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02275l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02946l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG18278"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07382" sboTerm="SBO:0000176" id="MAR07382" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07382" sboTerm="SBO:0000176" id="R_MAR07382" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -250080,7 +250084,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07382">
+            <rdf:Description rdf:about="#R_MAR07382">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.2.1.52"/>
@@ -250093,14 +250097,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040l" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM02274l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM02274l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02276l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02527l" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02946l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02276l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02527l" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02946l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -250111,7 +250115,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07383" sboTerm="SBO:0000176" id="MAR07383" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07383" sboTerm="SBO:0000176" id="R_MAR07383" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -250119,7 +250123,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07383">
+            <rdf:Description rdf:about="#R_MAR07383">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.2.1.52"/>
@@ -250132,12 +250136,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040l" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02275l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02275l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02276l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02527l" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02276l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02527l" stoichiometry="2" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -250148,7 +250152,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07384" sboTerm="SBO:0000176" id="MAR07384" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07384" sboTerm="SBO:0000176" id="R_MAR07384" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -250156,7 +250160,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07384">
+            <rdf:Description rdf:about="#R_MAR07384">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.6.4"/>
@@ -250172,18 +250176,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02276l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02276l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01910l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02277l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01910l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02277l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Ect3"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07385" sboTerm="SBO:0000176" id="MAR07385" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07385" sboTerm="SBO:0000176" id="R_MAR07385" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -250191,7 +250195,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07385">
+            <rdf:Description rdf:about="#R_MAR07385">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.6.14"/>
@@ -250204,19 +250208,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02277l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02277l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02238l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02946l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02238l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02946l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG18278"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07386" sboTerm="SBO:0000176" id="MAR07386" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07386" sboTerm="SBO:0000176" id="R_MAR07386" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -250224,7 +250228,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07386">
+            <rdf:Description rdf:about="#R_MAR07386">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.2.1.52"/>
@@ -250237,12 +250241,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02238l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02238l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02239l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02527l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02239l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02527l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -250253,7 +250257,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07387" sboTerm="SBO:0000176" id="MAR07387" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07387" sboTerm="SBO:0000176" id="R_MAR07387" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -250261,7 +250265,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07387">
+            <rdf:Description rdf:about="#R_MAR07387">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.2.1.52"/>
@@ -250274,14 +250278,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040l" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02277l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02277l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02239l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02527l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02946l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02239l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02527l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02946l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -250292,7 +250296,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07388" sboTerm="SBO:0000176" id="MAR07388" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07388" sboTerm="SBO:0000176" id="R_MAR07388" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -250300,7 +250304,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07388">
+            <rdf:Description rdf:about="#R_MAR07388">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.6.4"/>
@@ -250316,18 +250320,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02239l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02239l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01910l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02240l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01910l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02240l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Ect3"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07389" sboTerm="SBO:0000176" id="MAR07389" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07389" sboTerm="SBO:0000176" id="R_MAR07389" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -250335,7 +250339,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07389">
+            <rdf:Description rdf:about="#R_MAR07389">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.6.14"/>
@@ -250348,19 +250352,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02240l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02240l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02241l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02946l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02241l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02946l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG18278"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07390" sboTerm="SBO:0000176" id="MAR07390" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07390" sboTerm="SBO:0000176" id="R_MAR07390" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -250368,7 +250372,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07390">
+            <rdf:Description rdf:about="#R_MAR07390">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.2.1.52"/>
@@ -250381,12 +250385,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02241l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02241l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02242l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02527l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02242l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02527l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -250397,7 +250401,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07391" sboTerm="SBO:0000176" id="MAR07391" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07391" sboTerm="SBO:0000176" id="R_MAR07391" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -250405,7 +250409,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07391">
+            <rdf:Description rdf:about="#R_MAR07391">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.2.1.52"/>
@@ -250418,14 +250422,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040l" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02240l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02240l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02242l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02527l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02946l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02242l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02527l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02946l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -250436,7 +250440,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07392" sboTerm="SBO:0000176" id="MAR07392" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07392" sboTerm="SBO:0000176" id="R_MAR07392" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -250444,7 +250448,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07392">
+            <rdf:Description rdf:about="#R_MAR07392">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.6.4"/>
@@ -250460,18 +250464,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02242l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02242l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01910l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02243l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01910l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02243l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Ect3"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07393" sboTerm="SBO:0000176" id="MAR07393" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07393" sboTerm="SBO:0000176" id="R_MAR07393" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -250479,7 +250483,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07393">
+            <rdf:Description rdf:about="#R_MAR07393">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.6.14"/>
@@ -250492,19 +250496,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02243l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02243l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02244l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02946l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02244l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02946l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG18278"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07394" sboTerm="SBO:0000176" id="MAR07394" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07394" sboTerm="SBO:0000176" id="R_MAR07394" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -250512,7 +250516,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07394">
+            <rdf:Description rdf:about="#R_MAR07394">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.2.1.52"/>
@@ -250525,12 +250529,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02244l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02244l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02245l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02527l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02245l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02527l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -250541,7 +250545,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07395" sboTerm="SBO:0000176" id="MAR07395" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07395" sboTerm="SBO:0000176" id="R_MAR07395" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -250549,7 +250553,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07395">
+            <rdf:Description rdf:about="#R_MAR07395">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.2.1.52"/>
@@ -250562,14 +250566,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040l" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02243l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02243l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02245l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02527l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02946l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02245l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02527l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02946l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -250580,7 +250584,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07396" sboTerm="SBO:0000176" id="MAR07396" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07396" sboTerm="SBO:0000176" id="R_MAR07396" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -250588,7 +250592,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07396">
+            <rdf:Description rdf:about="#R_MAR07396">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.6.4"/>
@@ -250604,18 +250608,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02245l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02245l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01910l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02246l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01910l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02246l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Ect3"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07397" sboTerm="SBO:0000176" id="MAR07397" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07397" sboTerm="SBO:0000176" id="R_MAR07397" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -250623,7 +250627,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07397">
+            <rdf:Description rdf:about="#R_MAR07397">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.6.14"/>
@@ -250636,19 +250640,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02246l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02246l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02247l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02946l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02247l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02946l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG18278"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07398" sboTerm="SBO:0000176" id="MAR07398" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07398" sboTerm="SBO:0000176" id="R_MAR07398" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -250656,7 +250660,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07398">
+            <rdf:Description rdf:about="#R_MAR07398">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.2.1.52"/>
@@ -250669,14 +250673,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040l" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02246l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02246l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02249l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02527l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02946l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02249l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02527l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02946l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -250687,7 +250691,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07399" sboTerm="SBO:0000176" id="MAR07399" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07399" sboTerm="SBO:0000176" id="R_MAR07399" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -250695,7 +250699,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07399">
+            <rdf:Description rdf:about="#R_MAR07399">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.2.1.52"/>
@@ -250708,12 +250712,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02247l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02247l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02249l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02527l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02249l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02527l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -250724,7 +250728,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07400" sboTerm="SBO:0000176" id="MAR07400" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07400" sboTerm="SBO:0000176" id="R_MAR07400" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -250732,7 +250736,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07400">
+            <rdf:Description rdf:about="#R_MAR07400">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.6.4"/>
@@ -250748,18 +250752,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02249l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02249l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01910l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02250l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01910l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02250l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Ect3"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07401" sboTerm="SBO:0000176" id="MAR07401" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07401" sboTerm="SBO:0000176" id="R_MAR07401" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -250767,7 +250771,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07401">
+            <rdf:Description rdf:about="#R_MAR07401">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.6.14"/>
@@ -250780,19 +250784,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02250l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02250l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02251l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02946l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02251l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02946l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG18278"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07402" sboTerm="SBO:0000176" id="MAR07402" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07402" sboTerm="SBO:0000176" id="R_MAR07402" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -250800,7 +250804,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07402">
+            <rdf:Description rdf:about="#R_MAR07402">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.2.1.52"/>
@@ -250813,12 +250817,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02251l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02251l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02252l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02527l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02252l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02527l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -250829,7 +250833,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07403" sboTerm="SBO:0000176" id="MAR07403" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07403" sboTerm="SBO:0000176" id="R_MAR07403" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -250837,7 +250841,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07403">
+            <rdf:Description rdf:about="#R_MAR07403">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.2.1.52"/>
@@ -250850,14 +250854,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040l" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02250l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02250l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02252l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02527l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02946l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02252l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02527l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02946l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -250868,7 +250872,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07404" sboTerm="SBO:0000176" id="MAR07404" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07404" sboTerm="SBO:0000176" id="R_MAR07404" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -250876,7 +250880,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07404">
+            <rdf:Description rdf:about="#R_MAR07404">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.6.4"/>
@@ -250892,18 +250896,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02252l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02252l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01910l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02253l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01910l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02253l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Ect3"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07405" sboTerm="SBO:0000176" id="MAR07405" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07405" sboTerm="SBO:0000176" id="R_MAR07405" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -250911,7 +250915,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07405">
+            <rdf:Description rdf:about="#R_MAR07405">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.6.14"/>
@@ -250924,19 +250928,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02253l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02253l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02254l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02946l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02254l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02946l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG18278"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07406" sboTerm="SBO:0000176" id="MAR07406" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07406" sboTerm="SBO:0000176" id="R_MAR07406" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -250944,7 +250948,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07406">
+            <rdf:Description rdf:about="#R_MAR07406">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.2.1.52"/>
@@ -250957,12 +250961,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02254l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02254l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02255l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02527l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02255l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02527l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -250973,7 +250977,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07407" sboTerm="SBO:0000176" id="MAR07407" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07407" sboTerm="SBO:0000176" id="R_MAR07407" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -250981,7 +250985,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07407">
+            <rdf:Description rdf:about="#R_MAR07407">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.2.1.52"/>
@@ -250994,14 +250998,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040l" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02253l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02253l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02255l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02527l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02946l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02255l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02527l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02946l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -251012,7 +251016,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07408" sboTerm="SBO:0000176" id="MAR07408" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07408" sboTerm="SBO:0000176" id="R_MAR07408" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -251020,7 +251024,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07408">
+            <rdf:Description rdf:about="#R_MAR07408">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.6.4"/>
@@ -251036,18 +251040,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02255l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02255l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01910l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02256l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01910l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02256l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Ect3"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07409" sboTerm="SBO:0000176" id="MAR07409" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07409" sboTerm="SBO:0000176" id="R_MAR07409" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -251055,7 +251059,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07409">
+            <rdf:Description rdf:about="#R_MAR07409">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.6.14"/>
@@ -251068,19 +251072,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02256l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02256l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02257l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02946l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02257l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02946l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG18278"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07410" sboTerm="SBO:0000176" id="MAR07410" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07410" sboTerm="SBO:0000176" id="R_MAR07410" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -251088,7 +251092,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07410">
+            <rdf:Description rdf:about="#R_MAR07410">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.2.1.52"/>
@@ -251101,12 +251105,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02257l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02257l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02258l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02527l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02258l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02527l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -251117,7 +251121,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07411" sboTerm="SBO:0000176" id="MAR07411" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07411" sboTerm="SBO:0000176" id="R_MAR07411" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -251125,7 +251129,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07411">
+            <rdf:Description rdf:about="#R_MAR07411">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.2.1.52"/>
@@ -251138,14 +251142,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040l" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02256l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02256l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02258l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02527l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02946l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02258l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02527l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02946l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -251156,7 +251160,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07412" sboTerm="SBO:0000176" id="MAR07412" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07412" sboTerm="SBO:0000176" id="R_MAR07412" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -251164,7 +251168,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07412">
+            <rdf:Description rdf:about="#R_MAR07412">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.6.4"/>
@@ -251180,18 +251184,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02258l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02258l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01910l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02260l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01910l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02260l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Ect3"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07413" sboTerm="SBO:0000176" id="MAR07413" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07413" sboTerm="SBO:0000176" id="R_MAR07413" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -251199,7 +251203,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07413">
+            <rdf:Description rdf:about="#R_MAR07413">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.6.14"/>
@@ -251212,19 +251216,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02260l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02260l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02261l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02946l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02261l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02946l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG18278"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07414" sboTerm="SBO:0000176" id="MAR07414" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07414" sboTerm="SBO:0000176" id="R_MAR07414" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -251232,7 +251236,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07414">
+            <rdf:Description rdf:about="#R_MAR07414">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.2.1.52"/>
@@ -251245,12 +251249,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02261l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02261l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02262l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02527l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02262l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02527l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -251261,7 +251265,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07415" sboTerm="SBO:0000176" id="MAR07415" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07415" sboTerm="SBO:0000176" id="R_MAR07415" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -251269,7 +251273,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07415">
+            <rdf:Description rdf:about="#R_MAR07415">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.2.1.52"/>
@@ -251282,14 +251286,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040l" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02260l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02260l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02262l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02527l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02946l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02262l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02527l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02946l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -251300,7 +251304,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07416" sboTerm="SBO:0000176" id="MAR07416" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07416" sboTerm="SBO:0000176" id="R_MAR07416" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -251308,7 +251312,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07416">
+            <rdf:Description rdf:about="#R_MAR07416">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.6.4"/>
@@ -251324,18 +251328,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02262l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02262l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01910l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02263l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01910l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02263l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Ect3"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07417" sboTerm="SBO:0000176" id="MAR07417" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07417" sboTerm="SBO:0000176" id="R_MAR07417" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -251343,7 +251347,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07417">
+            <rdf:Description rdf:about="#R_MAR07417">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.6.14"/>
@@ -251356,19 +251360,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02263l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02263l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02264l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02946l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02264l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02946l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG18278"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07418" sboTerm="SBO:0000176" id="MAR07418" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07418" sboTerm="SBO:0000176" id="R_MAR07418" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -251376,7 +251380,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07418">
+            <rdf:Description rdf:about="#R_MAR07418">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.2.1.52"/>
@@ -251389,14 +251393,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040l" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02263l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02263l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02265l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02527l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02946l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02265l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02527l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02946l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -251407,7 +251411,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07419" sboTerm="SBO:0000176" id="MAR07419" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07419" sboTerm="SBO:0000176" id="R_MAR07419" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -251415,7 +251419,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07419">
+            <rdf:Description rdf:about="#R_MAR07419">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.2.1.52"/>
@@ -251428,12 +251432,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02264l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02264l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02265l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02527l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02265l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02527l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -251444,7 +251448,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07420" sboTerm="SBO:0000176" id="MAR07420" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07420" sboTerm="SBO:0000176" id="R_MAR07420" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -251452,7 +251456,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07420">
+            <rdf:Description rdf:about="#R_MAR07420">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.6.4"/>
@@ -251468,18 +251472,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02265l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02265l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01910l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02266l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01910l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02266l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Ect3"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07421" sboTerm="SBO:0000176" id="MAR07421" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07421" sboTerm="SBO:0000176" id="R_MAR07421" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -251487,7 +251491,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07421">
+            <rdf:Description rdf:about="#R_MAR07421">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.6.14"/>
@@ -251500,19 +251504,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02266l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02266l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02267l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02946l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02267l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02946l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG18278"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07422" sboTerm="SBO:0000176" id="MAR07422" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07422" sboTerm="SBO:0000176" id="R_MAR07422" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -251520,7 +251524,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07422">
+            <rdf:Description rdf:about="#R_MAR07422">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.2.1.52"/>
@@ -251533,12 +251537,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02267l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02267l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02268l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02527l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02268l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02527l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -251549,7 +251553,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07423" sboTerm="SBO:0000176" id="MAR07423" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07423" sboTerm="SBO:0000176" id="R_MAR07423" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -251557,7 +251561,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07423">
+            <rdf:Description rdf:about="#R_MAR07423">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.2.1.52"/>
@@ -251570,14 +251574,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040l" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02266l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02266l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02268l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02527l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02946l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02268l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02527l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02946l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -251588,7 +251592,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07424" sboTerm="SBO:0000176" id="MAR07424" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07424" sboTerm="SBO:0000176" id="R_MAR07424" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -251596,7 +251600,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07424">
+            <rdf:Description rdf:about="#R_MAR07424">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.6.4"/>
@@ -251612,18 +251616,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02268l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02268l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01910l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02269l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01910l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02269l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Ect3"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07425" sboTerm="SBO:0000176" id="MAR07425" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07425" sboTerm="SBO:0000176" id="R_MAR07425" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -251631,7 +251635,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07425">
+            <rdf:Description rdf:about="#R_MAR07425">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.2.1.52"/>
@@ -251644,12 +251648,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02269l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02269l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02271l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02527l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02271l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02527l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -251660,7 +251664,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07426" sboTerm="SBO:0000176" id="MAR07426" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07426" sboTerm="SBO:0000176" id="R_MAR07426" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -251668,7 +251672,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07426">
+            <rdf:Description rdf:about="#R_MAR07426">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.6.4"/>
@@ -251684,18 +251688,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02271l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02271l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01910l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02272l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01910l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02272l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Ect3"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07427" sboTerm="SBO:0000176" id="MAR07427" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07427" sboTerm="SBO:0000176" id="R_MAR07427" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -251703,7 +251707,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07427">
+            <rdf:Description rdf:about="#R_MAR07427">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.2.1.52"/>
@@ -251716,12 +251720,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02272l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02272l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00141l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02527l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00141l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02527l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -251732,7 +251736,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07455" sboTerm="SBO:0000176" id="MAR07455" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07455" sboTerm="SBO:0000176" id="R_MAR07455" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -251740,7 +251744,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07455">
+            <rdf:Description rdf:about="#R_MAR07455">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.6.4"/>
@@ -251756,18 +251760,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02288l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02288l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02279l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02543l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02279l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02543l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Ect3"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07456" sboTerm="SBO:0000176" id="MAR07456" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07456" sboTerm="SBO:0000176" id="R_MAR07456" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -251775,7 +251779,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07456">
+            <rdf:Description rdf:about="#R_MAR07456">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.6.4"/>
@@ -251791,19 +251795,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02279l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02279l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02280l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02946l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02280l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02946l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Ect3"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07457" sboTerm="SBO:0000176" id="MAR07457" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07457" sboTerm="SBO:0000176" id="R_MAR07457" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -251811,7 +251815,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07457">
+            <rdf:Description rdf:about="#R_MAR07457">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.6.4"/>
@@ -251827,18 +251831,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040l" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02280l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02280l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01910l" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02281l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01910l" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02281l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Ect3"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07458" sboTerm="SBO:0000176" id="MAR07458" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07458" sboTerm="SBO:0000176" id="R_MAR07458" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -251846,7 +251850,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07458">
+            <rdf:Description rdf:about="#R_MAR07458">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.6.14"/>
@@ -251859,19 +251863,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02281l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02281l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02282l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02946l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02282l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02946l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG18278"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07459" sboTerm="SBO:0000176" id="MAR07459" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07459" sboTerm="SBO:0000176" id="R_MAR07459" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -251879,7 +251883,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07459">
+            <rdf:Description rdf:about="#R_MAR07459">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.2.1.52"/>
@@ -251892,14 +251896,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040l" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02281l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02281l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02283l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02527l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02946l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02283l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02527l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02946l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -251910,7 +251914,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07460" sboTerm="SBO:0000176" id="MAR07460" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07460" sboTerm="SBO:0000176" id="R_MAR07460" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -251918,7 +251922,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07460">
+            <rdf:Description rdf:about="#R_MAR07460">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.2.1.52"/>
@@ -251931,12 +251935,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02282l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02282l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02283l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02527l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02283l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02527l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -251947,7 +251951,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07461" sboTerm="SBO:0000176" id="MAR07461" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07461" sboTerm="SBO:0000176" id="R_MAR07461" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -251955,7 +251959,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07461">
+            <rdf:Description rdf:about="#R_MAR07461">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.6.4"/>
@@ -251971,18 +251975,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02283l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02283l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01910l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02284l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01910l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02284l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Ect3"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07462" sboTerm="SBO:0000176" id="MAR07462" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07462" sboTerm="SBO:0000176" id="R_MAR07462" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -251990,7 +251994,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07462">
+            <rdf:Description rdf:about="#R_MAR07462">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.2.1.52"/>
@@ -252003,14 +252007,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040l" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02284l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02284l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02286l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02527l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02946l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02286l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02527l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02946l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -252021,7 +252025,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07463" sboTerm="SBO:0000176" id="MAR07463" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07463" sboTerm="SBO:0000176" id="R_MAR07463" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -252029,7 +252033,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07463">
+            <rdf:Description rdf:about="#R_MAR07463">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.6.14"/>
@@ -252042,19 +252046,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02284l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02284l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02285l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02946l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02285l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02946l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG18278"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07464" sboTerm="SBO:0000176" id="MAR07464" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07464" sboTerm="SBO:0000176" id="R_MAR07464" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -252062,7 +252066,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07464">
+            <rdf:Description rdf:about="#R_MAR07464">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.2.1.52"/>
@@ -252075,12 +252079,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02285l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02285l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02286l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02527l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02286l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02527l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -252091,7 +252095,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07465" sboTerm="SBO:0000176" id="MAR07465" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07465" sboTerm="SBO:0000176" id="R_MAR07465" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -252099,7 +252103,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07465">
+            <rdf:Description rdf:about="#R_MAR07465">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.6.4"/>
@@ -252115,18 +252119,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02286l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02286l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01910l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02287l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01910l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02287l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Ect3"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07466" sboTerm="SBO:0000176" id="MAR07466" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07466" sboTerm="SBO:0000176" id="R_MAR07466" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -252134,7 +252138,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07466">
+            <rdf:Description rdf:about="#R_MAR07466">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.2.1.52"/>
@@ -252147,12 +252151,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02287l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02287l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01801l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02527l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01801l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02527l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -252163,7 +252167,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07467" sboTerm="SBO:0000176" id="MAR07467" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07467" sboTerm="SBO:0000176" id="R_MAR07467" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -252171,7 +252175,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07467">
+            <rdf:Description rdf:about="#R_MAR07467">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.6.4"/>
@@ -252187,18 +252191,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01801l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01801l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01611l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01910l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01611l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01910l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Ect3"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07468" sboTerm="SBO:0000176" id="MAR07468" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07468" sboTerm="SBO:0000176" id="R_MAR07468" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -252206,7 +252210,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07468">
+            <rdf:Description rdf:about="#R_MAR07468">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/NAGLCAly"/>
@@ -252218,15 +252222,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01611l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01611l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02527l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03000l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02527l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03000l" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07469" sboTerm="SBO:0000176" id="MAR07469" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07469" sboTerm="SBO:0000176" id="R_MAR07469" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -252234,7 +252238,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07469">
+            <rdf:Description rdf:about="#R_MAR07469">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.2.1.49"/>
@@ -252247,19 +252251,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03000l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03000l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00205l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03110l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00205l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03110l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG7997"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07484" sboTerm="SBO:0000176" id="MAR07484" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07484" sboTerm="SBO:0000176" id="R_MAR07484" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -252267,7 +252271,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07484">
+            <rdf:Description rdf:about="#R_MAR07484">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.6.4"/>
@@ -252283,18 +252287,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02303l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02303l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02299l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02543l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02299l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02543l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Ect3"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07485" sboTerm="SBO:0000176" id="MAR07485" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07485" sboTerm="SBO:0000176" id="R_MAR07485" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -252302,7 +252306,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07485">
+            <rdf:Description rdf:about="#R_MAR07485">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.6.4"/>
@@ -252318,19 +252322,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02299l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02299l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02300l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02946l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02300l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02946l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Ect3"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07486" sboTerm="SBO:0000176" id="MAR07486" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07486" sboTerm="SBO:0000176" id="R_MAR07486" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -252338,7 +252342,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07486">
+            <rdf:Description rdf:about="#R_MAR07486">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.6.4"/>
@@ -252354,18 +252358,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040l" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02300l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02300l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01910l" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02301l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01910l" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02301l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Ect3"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07487" sboTerm="SBO:0000176" id="MAR07487" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07487" sboTerm="SBO:0000176" id="R_MAR07487" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -252373,7 +252377,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07487">
+            <rdf:Description rdf:about="#R_MAR07487">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.6.14"/>
@@ -252386,19 +252390,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02301l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02301l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02302l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02946l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02302l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02946l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG18278"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07488" sboTerm="SBO:0000176" id="MAR07488" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07488" sboTerm="SBO:0000176" id="R_MAR07488" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -252406,7 +252410,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07488">
+            <rdf:Description rdf:about="#R_MAR07488">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.2.1.52"/>
@@ -252419,14 +252423,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040l" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM02301l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM02301l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02283l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02527l" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02946l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02283l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02527l" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02946l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -252437,7 +252441,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07489" sboTerm="SBO:0000176" id="MAR07489" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07489" sboTerm="SBO:0000176" id="R_MAR07489" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -252445,7 +252449,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07489">
+            <rdf:Description rdf:about="#R_MAR07489">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.2.1.52"/>
@@ -252458,12 +252462,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040l" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02302l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02302l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02283l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02527l" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02283l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02527l" stoichiometry="2" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -252474,7 +252478,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08643" sboTerm="SBO:0000176" id="MAR08643" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08643" sboTerm="SBO:0000176" id="R_MAR08643" name="cocaine benzoylhydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -252482,7 +252486,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08643">
+            <rdf:Description rdf:about="#R_MAR08643">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.1"/>
@@ -252497,16 +252501,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01601c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01601c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01380c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01767c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01380c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01767c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08645" sboTerm="SBO:0000176" id="MAR08645" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08645" sboTerm="SBO:0000176" id="R_MAR08645" name="cocaine benzoylhydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -252514,7 +252518,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08645">
+            <rdf:Description rdf:about="#R_MAR08645">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.84"/>
@@ -252528,16 +252532,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01601r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01601r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01380r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01767r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01380r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01767r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01584" sboTerm="SBO:0000176" id="MAR01584" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01584" sboTerm="SBO:0000176" id="R_MAR01584" name="7alpha-Hydroxycholesterol:NAD+ 3-oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -252545,7 +252549,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01584">
+            <rdf:Description rdf:about="#R_MAR01584">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.181"/>
@@ -252560,19 +252564,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01183r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01183r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01182r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01182r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG7724"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01585" sboTerm="SBO:0000176" id="MAR01585" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01585" sboTerm="SBO:0000176" id="R_MAR01585" name="Cholest-5-ene-3beta,7alpha-diol:NAD+ 3-oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -252581,7 +252585,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01585">
+            <rdf:Description rdf:about="#R_MAR01585">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.181"/>
@@ -252598,19 +252602,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01183r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01183r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01182r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01182r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG7724"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01592" sboTerm="SBO:0000185" id="MAR01592" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01592" sboTerm="SBO:0000185" id="R_MAR01592" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -252619,7 +252623,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01592">
+            <rdf:Description rdf:about="#R_MAR01592">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105428"/>
@@ -252630,18 +252634,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01178r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01178r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01178c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01285r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01178c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01593" sboTerm="SBO:0000185" id="MAR01593" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01593" sboTerm="SBO:0000185" id="R_MAR01593" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -252650,7 +252654,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01593">
+            <rdf:Description rdf:about="#R_MAR01593">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/XOLDIOLONEt"/>
@@ -252662,13 +252666,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01178c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01178c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01178r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01178r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01595" sboTerm="SBO:0000176" id="MAR01595" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01595" sboTerm="SBO:0000176" id="R_MAR01595" name="7alpha-Hydroxy-5beta-cholestan-3-one:NADP+ delta4-oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -252677,7 +252681,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01595">
+            <rdf:Description rdf:about="#R_MAR01595">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.1.3"/>
@@ -252697,19 +252701,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01178c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01178c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01177c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01177c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Akr1B"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01598" sboTerm="SBO:0000176" id="MAR01598" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01598" sboTerm="SBO:0000176" id="R_MAR01598" name="3alpha,7alpha,12alpha-Trihydroxy-5beta-cholestane:NAD+ oxidoreductase (B-specific)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -252718,7 +252722,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01598">
+            <rdf:Description rdf:about="#R_MAR01598">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.50"/>
@@ -252733,19 +252737,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01177c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01177c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01078c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01078c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Akr1B"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01599" sboTerm="SBO:0000176" id="MAR01599" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01599" sboTerm="SBO:0000176" id="R_MAR01599" name="3alpha,7alpha,12alpha-Trihydroxy-5beta-cholestane:NADP+ oxidoreductase (B-specific)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -252754,7 +252758,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01599">
+            <rdf:Description rdf:about="#R_MAR01599">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.50"/>
@@ -252770,19 +252774,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01177c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01177c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01078c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01078c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Akr1B"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01604" sboTerm="SBO:0000176" id="MAR01604" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01604" sboTerm="SBO:0000176" id="R_MAR01604" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -252791,7 +252795,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01604">
+            <rdf:Description rdf:about="#R_MAR01604">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.13.15"/>
@@ -252804,15 +252808,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01078c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01078c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01090c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01090c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -252821,7 +252825,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01605" sboTerm="SBO:0000176" id="MAR01605" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01605" sboTerm="SBO:0000176" id="R_MAR01605" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -252830,7 +252834,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01605">
+            <rdf:Description rdf:about="#R_MAR01605">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.13.15"/>
@@ -252847,15 +252851,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01078m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01078m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01090m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01090m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -252864,7 +252868,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01608" sboTerm="SBO:0000176" id="MAR01608" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01608" sboTerm="SBO:0000176" id="R_MAR01608" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -252873,7 +252877,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01608">
+            <rdf:Description rdf:about="#R_MAR01608">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.13.15"/>
@@ -252886,13 +252890,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01090c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01090c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00750c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00750c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -252901,7 +252905,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01609" sboTerm="SBO:0000176" id="MAR01609" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01609" sboTerm="SBO:0000176" id="R_MAR01609" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -252909,7 +252913,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01609">
+            <rdf:Description rdf:about="#R_MAR01609">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.13.15"/>
@@ -252922,13 +252926,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01090m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01090m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00750m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00750m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -252937,7 +252941,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01610" sboTerm="SBO:0000176" id="MAR01610" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01610" sboTerm="SBO:0000176" id="R_MAR01610" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -252946,7 +252950,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01610">
+            <rdf:Description rdf:about="#R_MAR01610">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.13.15"/>
@@ -252960,13 +252964,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01090m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01090m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00750m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00750m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -252975,7 +252979,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01611" sboTerm="SBO:0000176" id="MAR01611" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01611" sboTerm="SBO:0000176" id="R_MAR01611" name="3alpha,7alpha,12alpha-Trihydroxy-5beta-cholestan-26-al:NAD+ 26-oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -252984,7 +252988,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01611">
+            <rdf:Description rdf:about="#R_MAR01611">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.13.15"/>
@@ -252997,14 +253001,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00750c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00750c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00752c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02553c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00752c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02553c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -253013,7 +253017,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01613" sboTerm="SBO:0000176" id="MAR01613" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01613" sboTerm="SBO:0000176" id="R_MAR01613" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -253021,7 +253025,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01613">
+            <rdf:Description rdf:about="#R_MAR01613">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.13.15"/>
@@ -253032,14 +253036,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00750m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00750m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00752m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00752m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -253048,7 +253052,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01614" sboTerm="SBO:0000176" id="MAR01614" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01614" sboTerm="SBO:0000176" id="R_MAR01614" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -253057,7 +253061,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01614">
+            <rdf:Description rdf:about="#R_MAR01614">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.13.15"/>
@@ -253072,14 +253076,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00750m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00750m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00752m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00752m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -253088,7 +253092,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01619" sboTerm="SBO:0000185" id="MAR01619" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01619" sboTerm="SBO:0000185" id="R_MAR01619" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -253097,7 +253101,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01619">
+            <rdf:Description rdf:about="#R_MAR01619">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.7"/>
@@ -253109,16 +253113,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00752c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00752c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00752r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00752r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Fatp1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01620" sboTerm="SBO:0000185" id="MAR01620" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01620" sboTerm="SBO:0000185" id="R_MAR01620" name="3alpha,7alpha-Dihydroxy-5beta-cholestanate:CoA ligase (AMP-forming)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -253127,7 +253131,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01620">
+            <rdf:Description rdf:about="#R_MAR01620">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.7"/>
@@ -253144,16 +253148,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00752c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00752c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00752m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00752m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Fatp1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01622" sboTerm="SBO:0000185" id="MAR01622" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01622" sboTerm="SBO:0000185" id="R_MAR01622" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -253162,7 +253166,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01622">
+            <rdf:Description rdf:about="#R_MAR01622">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106326"/>
@@ -253173,21 +253177,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00752c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00752c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00752x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00752x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Abcd3"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01623" sboTerm="SBO:0000185" id="MAR01623" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01623" sboTerm="SBO:0000185" id="R_MAR01623" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -253195,7 +253199,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01623">
+            <rdf:Description rdf:about="#R_MAR01623">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/HMR_1623"/>
@@ -253206,13 +253210,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00752c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00752c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00752x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00752x" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01624" sboTerm="SBO:0000176" id="MAR01624" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01624" sboTerm="SBO:0000176" id="R_MAR01624" name="3alpha,7alpha,12alpha-trihydroxy-5beta-cholestanoate:CoA ligase (AMP-forming)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -253221,7 +253225,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01624">
+            <rdf:Description rdf:about="#R_MAR01624">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.7"/>
@@ -253236,20 +253240,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00752r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00752r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00616r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01334r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00616r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Fatp1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01625" sboTerm="SBO:0000176" id="MAR01625" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01625" sboTerm="SBO:0000176" id="R_MAR01625" name="3alpha,7alpha,12alpha-trihydroxy-5beta-cholestanoate:CoA ligase (AMP-forming)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -253257,7 +253261,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01625">
+            <rdf:Description rdf:about="#R_MAR01625">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.7"/>
@@ -253271,20 +253275,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00752x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00752x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00616x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01334x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00616x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Fatp1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01627" sboTerm="SBO:0000176" id="MAR01627" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01627" sboTerm="SBO:0000176" id="R_MAR01627" name="3alpha,7alpha,12alpha-trihydroxy-5beta-cholestanoate:CoA ligase (AMP-forming)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -253293,7 +253297,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01627">
+            <rdf:Description rdf:about="#R_MAR01627">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.7"/>
@@ -253307,20 +253311,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00752c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00752c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00616c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01334c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00616c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Fatp1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01632" sboTerm="SBO:0000176" id="MAR01632" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01632" sboTerm="SBO:0000176" id="R_MAR01632" name="3alpha,7alpha,12alpha-trihydroxy-5beta-cholestan-26-oyl-CoA 25-epimerase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -253329,7 +253333,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01632">
+            <rdf:Description rdf:about="#R_MAR01632">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/5.1.99.4"/>
@@ -253344,16 +253348,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00616x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00616x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00618x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00618x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Amacr"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01635" sboTerm="SBO:0000176" id="MAR01635" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01635" sboTerm="SBO:0000176" id="R_MAR01635" name="3alpha,7alpha,12alpha-trihydroxy-5beta-cholestan-26-oyl-CoA 25-epimerase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -253362,7 +253366,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01635">
+            <rdf:Description rdf:about="#R_MAR01635">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/5.1.99.4"/>
@@ -253377,16 +253381,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00616m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00616m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00618m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00618m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Amacr"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01637" sboTerm="SBO:0000176" id="MAR01637" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01637" sboTerm="SBO:0000176" id="R_MAR01637" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -253395,7 +253399,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01637">
+            <rdf:Description rdf:about="#R_MAR01637">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.3.6"/>
@@ -253411,12 +253415,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00618m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00618m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00749m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02041m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00749m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -253425,7 +253429,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01638" sboTerm="SBO:0000176" id="MAR01638" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01638" sboTerm="SBO:0000176" id="R_MAR01638" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -253433,7 +253437,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01638">
+            <rdf:Description rdf:about="#R_MAR01638">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.3.6"/>
@@ -253446,14 +253450,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00618x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01803x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00618x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01803x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00749x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01802x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040x" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM00749x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01802x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040x" stoichiometry="2" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -253462,7 +253466,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01639" sboTerm="SBO:0000176" id="MAR01639" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01639" sboTerm="SBO:0000176" id="R_MAR01639" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -253471,7 +253475,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01639">
+            <rdf:Description rdf:about="#R_MAR01639">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.3.6"/>
@@ -253487,12 +253491,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00618x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00618x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00749x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02041x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00749x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -253501,7 +253505,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01642" sboTerm="SBO:0000176" id="MAR01642" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01642" sboTerm="SBO:0000176" id="R_MAR01642" name="(24R,25R)-3alpha,7alpha,12alpha,24-tetrahydroxy-5beta-cholestanoyl-CoA hydro-lyase [(24E)-3alpha,7alpha,12alpha-trihydroxy-5beta-cholest-24-enoyl-CoA-forming]" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -253510,7 +253514,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01642">
+            <rdf:Description rdf:about="#R_MAR01642">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.107"/>
@@ -253526,17 +253530,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00749x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00749x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00036x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00036x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Mfe2"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01646" sboTerm="SBO:0000176" id="MAR01646" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01646" sboTerm="SBO:0000176" id="R_MAR01646" name="(24R,25R)-3alpha,7alpha,12alpha,24-tetrahydroxy-5beta-cholestanoyl-CoA:NAD+ oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -253545,7 +253549,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01646">
+            <rdf:Description rdf:about="#R_MAR01646">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.35"/>
@@ -253560,19 +253564,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00036x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00036x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00748x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00748x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Mfe2"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01652" sboTerm="SBO:0000176" id="MAR01652" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01652" sboTerm="SBO:0000176" id="R_MAR01652" name="3alpha,7alpha,12alpha-trihydroxy-5beta-cholanoyl-CoA:propanoyl-CoA C-acyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -253581,7 +253585,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01652">
+            <rdf:Description rdf:about="#R_MAR01652">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.176"/>
@@ -253597,12 +253601,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00748x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00748x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01514x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02774x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01514x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02774x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -253611,7 +253615,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01653" sboTerm="SBO:0000176" id="MAR01653" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01653" sboTerm="SBO:0000176" id="R_MAR01653" name="3alpha,7alpha,12alpha-trihydroxy-5beta-cholanoyl-CoA:propanoyl-CoA C-acyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -253620,7 +253624,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01653">
+            <rdf:Description rdf:about="#R_MAR01653">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.176"/>
@@ -253636,12 +253640,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00748m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00748m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01514m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02774m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01514m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02774m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -253650,7 +253654,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01656" sboTerm="SBO:0000185" id="MAR01656" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01656" sboTerm="SBO:0000185" id="R_MAR01656" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -253659,7 +253663,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01656">
+            <rdf:Description rdf:about="#R_MAR01656">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105412"/>
@@ -253670,13 +253674,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01514c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01514c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01514x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01514x" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01659" sboTerm="SBO:0000185" id="MAR01659" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01659" sboTerm="SBO:0000185" id="R_MAR01659" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -253685,7 +253689,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01659">
+            <rdf:Description rdf:about="#R_MAR01659">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106313"/>
@@ -253697,18 +253701,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01514c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01514c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01514x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01514x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01665" sboTerm="SBO:0000185" id="MAR01665" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01665" sboTerm="SBO:0000185" id="R_MAR01665" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -253717,7 +253721,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01665">
+            <rdf:Description rdf:about="#R_MAR01665">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.7"/>
@@ -253730,16 +253734,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01445x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01445x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01445c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01445c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Fatp1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01666" sboTerm="SBO:0000185" id="MAR01666" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01666" sboTerm="SBO:0000185" id="R_MAR01666" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -253748,7 +253752,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01666">
+            <rdf:Description rdf:about="#R_MAR01666">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.7"/>
@@ -253761,16 +253765,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01445m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01445m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01445c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01445c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Fatp1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01673" sboTerm="SBO:0000176" id="MAR01673" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01673" sboTerm="SBO:0000176" id="R_MAR01673" name="7alpha-Hydroxy-5beta-cholestan-3-one:NADP+ delta4-oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -253779,7 +253783,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01673">
+            <rdf:Description rdf:about="#R_MAR01673">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.1.3"/>
@@ -253799,19 +253803,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01182c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01182c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01181c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01181c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Akr1B"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01676" sboTerm="SBO:0000176" id="MAR01676" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01676" sboTerm="SBO:0000176" id="R_MAR01676" name="3alpha,7alpha-Dihydroxy-5beta-cholestane:NADP+ oxidoreductase (B-specific)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -253820,7 +253824,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01676">
+            <rdf:Description rdf:about="#R_MAR01676">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.213"/>
@@ -253836,19 +253840,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01181c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01181c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01095c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01095c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Akr1B"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01678" sboTerm="SBO:0000176" id="MAR01678" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01678" sboTerm="SBO:0000176" id="R_MAR01678" name="3alpha,7alpha-Dihydroxy-5beta-cholestane:NAD+ oxidoreductase (B-specific)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -253857,7 +253861,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01678">
+            <rdf:Description rdf:about="#R_MAR01678">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.50"/>
@@ -253872,19 +253876,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01181c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01181c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01095c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01095c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Akr1B"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01679" sboTerm="SBO:0000185" id="MAR01679" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01679" sboTerm="SBO:0000185" id="R_MAR01679" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -253893,7 +253897,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01679">
+            <rdf:Description rdf:about="#R_MAR01679">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105426"/>
@@ -253906,13 +253910,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01095c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01095c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01095m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01095m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01681" sboTerm="SBO:0000176" id="MAR01681" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01681" sboTerm="SBO:0000176" id="R_MAR01681" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -253921,7 +253925,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01681">
+            <rdf:Description rdf:about="#R_MAR01681">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.13.15"/>
@@ -253934,15 +253938,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01095c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01095c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01093c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01093c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -253951,7 +253955,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01682" sboTerm="SBO:0000176" id="MAR01682" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01682" sboTerm="SBO:0000176" id="R_MAR01682" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -253960,7 +253964,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01682">
+            <rdf:Description rdf:about="#R_MAR01682">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.13.15"/>
@@ -253973,15 +253977,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01095m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01095m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01093m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01093m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -253990,7 +253994,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01684" sboTerm="SBO:0000176" id="MAR01684" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01684" sboTerm="SBO:0000176" id="R_MAR01684" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -253999,7 +254003,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01684">
+            <rdf:Description rdf:about="#R_MAR01684">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.1"/>
@@ -254013,13 +254017,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00756c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00756c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01093c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01093c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -254028,7 +254032,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01685" sboTerm="SBO:0000176" id="MAR01685" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01685" sboTerm="SBO:0000176" id="R_MAR01685" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -254037,7 +254041,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01685">
+            <rdf:Description rdf:about="#R_MAR01685">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.13.15"/>
@@ -254050,13 +254054,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01093m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01093m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00756m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00756m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -254065,7 +254069,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01687" sboTerm="SBO:0000176" id="MAR01687" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01687" sboTerm="SBO:0000176" id="R_MAR01687" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -254074,7 +254078,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01687">
+            <rdf:Description rdf:about="#R_MAR01687">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.15.15"/>
@@ -254085,15 +254089,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01095m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01095m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01094m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01094m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -254102,7 +254106,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01689" sboTerm="SBO:0000176" id="MAR01689" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01689" sboTerm="SBO:0000176" id="R_MAR01689" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -254111,7 +254115,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01689">
+            <rdf:Description rdf:about="#R_MAR01689">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.15.15"/>
@@ -254122,13 +254126,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01094m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01094m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00757m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00757m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -254137,7 +254141,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01691" sboTerm="SBO:0000176" id="MAR01691" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01691" sboTerm="SBO:0000176" id="R_MAR01691" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -254146,7 +254150,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01691">
+            <rdf:Description rdf:about="#R_MAR01691">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.13.15"/>
@@ -254158,14 +254162,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00757m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00757m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00758m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02555m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00758m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02555m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -254174,7 +254178,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01692" sboTerm="SBO:0000176" id="MAR01692" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01692" sboTerm="SBO:0000176" id="R_MAR01692" name="3alpha,7alpha-Dihydroxy-5beta-cholestan-26-al:NAD+ oxidoreductase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -254183,7 +254187,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01692">
+            <rdf:Description rdf:about="#R_MAR01692">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.2.1.3"/>
@@ -254196,14 +254200,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00756c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00756c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00758c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02553c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00758c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02553c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -254211,7 +254215,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01693" sboTerm="SBO:0000176" id="MAR01693" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01693" sboTerm="SBO:0000176" id="R_MAR01693" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -254220,7 +254224,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01693">
+            <rdf:Description rdf:about="#R_MAR01693">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.13.15"/>
@@ -254235,14 +254239,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00756m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00756m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00758m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00758m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -254251,7 +254255,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01694" sboTerm="SBO:0000185" id="MAR01694" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01694" sboTerm="SBO:0000185" id="R_MAR01694" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -254260,7 +254264,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01694">
+            <rdf:Description rdf:about="#R_MAR01694">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.176"/>
@@ -254274,13 +254278,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00758c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00758c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00758m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00758m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01695" sboTerm="SBO:0000185" id="MAR01695" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01695" sboTerm="SBO:0000185" id="R_MAR01695" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -254289,7 +254293,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01695">
+            <rdf:Description rdf:about="#R_MAR01695">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR97377"/>
@@ -254300,13 +254304,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00758c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00758c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00758r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00758r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01696" sboTerm="SBO:0000185" id="MAR01696" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01696" sboTerm="SBO:0000185" id="R_MAR01696" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -254315,7 +254319,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01696">
+            <rdf:Description rdf:about="#R_MAR01696">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106327"/>
@@ -254326,21 +254330,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00758c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00758c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00758x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00758x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Abcd3"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01697" sboTerm="SBO:0000176" id="MAR01697" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01697" sboTerm="SBO:0000176" id="R_MAR01697" name="3alpha,7alpha-dihydroxy-5beta-cholestanate:CoA ligase (AMP-forming)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -254349,7 +254353,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01697">
+            <rdf:Description rdf:about="#R_MAR01697">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.28"/>
@@ -254364,20 +254368,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00758c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00758c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00614c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01334c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00614c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Fatp1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01699" sboTerm="SBO:0000176" id="MAR01699" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01699" sboTerm="SBO:0000176" id="R_MAR01699" name="3alpha,7alpha-dihydroxy-5beta-cholestanate:CoA ligase (AMP-forming)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -254386,7 +254390,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01699">
+            <rdf:Description rdf:about="#R_MAR01699">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.28"/>
@@ -254402,20 +254406,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00758r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00758r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00614r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01334r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00614r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Fatp1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01700" sboTerm="SBO:0000176" id="MAR01700" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01700" sboTerm="SBO:0000176" id="R_MAR01700" name="3alpha,7alpha-dihydroxy-5beta-cholestanate:CoA ligase (AMP-forming)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -254424,7 +254428,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01700">
+            <rdf:Description rdf:about="#R_MAR01700">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.28"/>
@@ -254440,20 +254444,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00758x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00758x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00614x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01334x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00614x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Fatp1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01701" sboTerm="SBO:0000185" id="MAR01701" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01701" sboTerm="SBO:0000185" id="R_MAR01701" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -254462,7 +254466,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01701">
+            <rdf:Description rdf:about="#R_MAR01701">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105428"/>
@@ -254475,13 +254479,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00614c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00614c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00614x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00614x" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01702" sboTerm="SBO:0000185" id="MAR01702" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01702" sboTerm="SBO:0000185" id="R_MAR01702" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -254490,7 +254494,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01702">
+            <rdf:Description rdf:about="#R_MAR01702">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105423"/>
@@ -254500,18 +254504,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00614r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371r" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02040r" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM00614r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371r" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="2" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00614x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01285r" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02039r" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02751r" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM00614x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285r" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02751r" stoichiometry="2" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01703" sboTerm="SBO:0000176" id="MAR01703" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01703" sboTerm="SBO:0000176" id="R_MAR01703" name="3alpha,7alpha-dihydroxy-5beta-cholestanoyl-CoA 25-epimerase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -254520,7 +254524,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01703">
+            <rdf:Description rdf:about="#R_MAR01703">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/5.1.99.4"/>
@@ -254534,16 +254538,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00614x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00614x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00617x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00617x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Amacr"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01704" sboTerm="SBO:0000176" id="MAR01704" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01704" sboTerm="SBO:0000176" id="R_MAR01704" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -254552,7 +254556,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01704">
+            <rdf:Description rdf:about="#R_MAR01704">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.17.99.3"/>
@@ -254565,18 +254569,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00617x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00617x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00755x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02041x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00755x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="ACOX1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01706" sboTerm="SBO:0000176" id="MAR01706" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01706" sboTerm="SBO:0000176" id="R_MAR01706" name="(24R,25R)-3alpha,7alpha,24-trihydroxy-5beta-cholestanoyl-CoA hydro-lyase [(24E)-3alpha,7alpha-Dihydroxy-5beta-cholest-24-enoyl-CoA-forming]" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -254585,7 +254589,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01706">
+            <rdf:Description rdf:about="#R_MAR01706">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.107"/>
@@ -254599,17 +254603,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00755x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00755x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00037x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00037x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Mfe2"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01708" sboTerm="SBO:0000176" id="MAR01708" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01708" sboTerm="SBO:0000176" id="R_MAR01708" name="(24R,25R)-3alpha,7alpha,24-trihydroxy-5beta-cholestanoyl-CoA:NAD+ oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -254618,7 +254622,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01708">
+            <rdf:Description rdf:about="#R_MAR01708">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.107"/>
@@ -254632,19 +254636,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00037x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00037x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00754x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00754x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Mfe2"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01710" sboTerm="SBO:0000176" id="MAR01710" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01710" sboTerm="SBO:0000176" id="R_MAR01710" name="Propanoyl-CoA:acetyl-CoA C-acyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -254653,7 +254657,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01710">
+            <rdf:Description rdf:about="#R_MAR01710">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.176"/>
@@ -254668,12 +254672,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00754x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00754x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01434x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02774x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01434x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02774x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -254682,7 +254686,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01717" sboTerm="SBO:0000185" id="MAR01717" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01717" sboTerm="SBO:0000185" id="R_MAR01717" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -254691,7 +254695,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01717">
+            <rdf:Description rdf:about="#R_MAR01717">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105425"/>
@@ -254702,13 +254706,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01434c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01434c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01434x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01434x" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01725" sboTerm="SBO:0000185" id="MAR01725" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01725" sboTerm="SBO:0000185" id="R_MAR01725" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -254717,7 +254721,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01725">
+            <rdf:Description rdf:about="#R_MAR01725">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105425"/>
@@ -254728,13 +254732,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01434c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01434c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01434r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01434r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01726" sboTerm="SBO:0000176" id="MAR01726" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01726" sboTerm="SBO:0000176" id="R_MAR01726" name="chenodeoxycholate:CoA ligase (AMP-forming)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -254743,7 +254747,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01726">
+            <rdf:Description rdf:about="#R_MAR01726">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.7"/>
@@ -254757,20 +254761,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01334c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01434c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01434c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01435c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01435c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Fatp1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01727" sboTerm="SBO:0000176" id="MAR01727" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01727" sboTerm="SBO:0000176" id="R_MAR01727" name="chenodeoxycholate:CoA ligase (AMP-forming)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -254779,7 +254783,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01727">
+            <rdf:Description rdf:about="#R_MAR01727">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.7"/>
@@ -254793,20 +254797,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01334r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01434r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01434r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01371r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01435r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01435r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Fatp1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01729" sboTerm="SBO:0000176" id="MAR01729" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01729" sboTerm="SBO:0000176" id="R_MAR01729" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -254814,7 +254818,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01729">
+            <rdf:Description rdf:about="#R_MAR01729">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.8.2.14"/>
@@ -254824,19 +254828,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01435c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02682c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01435c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02682c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02681c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02950c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02681c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02950c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="St2"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01738" sboTerm="SBO:0000176" id="MAR01738" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01738" sboTerm="SBO:0000176" id="R_MAR01738" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -254845,7 +254849,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01738">
+            <rdf:Description rdf:about="#R_MAR01738">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.181"/>
@@ -254858,19 +254862,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01446c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01446c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00978c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00978c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG7724"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01740" sboTerm="SBO:0000176" id="MAR01740" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01740" sboTerm="SBO:0000176" id="R_MAR01740" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -254879,7 +254883,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01740">
+            <rdf:Description rdf:about="#R_MAR01740">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.1.3"/>
@@ -254892,19 +254896,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00976c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00976c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01081c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01081c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Akr1B"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01741" sboTerm="SBO:0000176" id="MAR01741" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01741" sboTerm="SBO:0000176" id="R_MAR01741" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -254913,7 +254917,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01741">
+            <rdf:Description rdf:about="#R_MAR01741">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.1.3"/>
@@ -254926,19 +254930,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00978c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00978c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01083c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01083c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Akr1B"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01742" sboTerm="SBO:0000176" id="MAR01742" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01742" sboTerm="SBO:0000176" id="R_MAR01742" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -254947,7 +254951,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01742">
+            <rdf:Description rdf:about="#R_MAR01742">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.50"/>
@@ -254960,19 +254964,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01081c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01081c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01077c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01077c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Akr1B"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01743" sboTerm="SBO:0000176" id="MAR01743" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01743" sboTerm="SBO:0000176" id="R_MAR01743" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -254981,7 +254985,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01743">
+            <rdf:Description rdf:about="#R_MAR01743">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.50"/>
@@ -254994,19 +254998,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01083c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01083c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01080c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01080c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Akr1B"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01744" sboTerm="SBO:0000185" id="MAR01744" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01744" sboTerm="SBO:0000185" id="R_MAR01744" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -255015,7 +255019,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01744">
+            <rdf:Description rdf:about="#R_MAR01744">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR125307"/>
@@ -255027,13 +255031,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01077c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01077c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01077m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01077m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01745" sboTerm="SBO:0000185" id="MAR01745" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01745" sboTerm="SBO:0000185" id="R_MAR01745" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -255042,7 +255046,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01745">
+            <rdf:Description rdf:about="#R_MAR01745">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR125302"/>
@@ -255054,13 +255058,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01080c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01080c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01080m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01080m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01746" sboTerm="SBO:0000176" id="MAR01746" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01746" sboTerm="SBO:0000176" id="R_MAR01746" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -255069,7 +255073,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01746">
+            <rdf:Description rdf:about="#R_MAR01746">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.13.15"/>
@@ -255082,15 +255086,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01077m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01077m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01076m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01076m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -255099,7 +255103,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01747" sboTerm="SBO:0000176" id="MAR01747" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01747" sboTerm="SBO:0000176" id="R_MAR01747" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -255108,7 +255112,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01747">
+            <rdf:Description rdf:about="#R_MAR01747">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.13.15"/>
@@ -255121,15 +255125,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01080m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01080m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01079m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01079m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -255138,7 +255142,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01748" sboTerm="SBO:0000176" id="MAR01748" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01748" sboTerm="SBO:0000176" id="R_MAR01748" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -255147,7 +255151,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01748">
+            <rdf:Description rdf:about="#R_MAR01748">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.13.15"/>
@@ -255160,15 +255164,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01076m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01076m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00746m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02554m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00746m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02554m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -255177,7 +255181,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01749" sboTerm="SBO:0000176" id="MAR01749" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01749" sboTerm="SBO:0000176" id="R_MAR01749" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -255186,7 +255190,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01749">
+            <rdf:Description rdf:about="#R_MAR01749">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.13.15"/>
@@ -255199,15 +255203,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01079m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01079m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00753m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02554m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00753m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02554m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -255216,7 +255220,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01750" sboTerm="SBO:0000176" id="MAR01750" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01750" sboTerm="SBO:0000176" id="R_MAR01750" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -255225,7 +255229,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01750">
+            <rdf:Description rdf:about="#R_MAR01750">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.13.15"/>
@@ -255238,14 +255242,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00746m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00746m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02977m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02977m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -255254,7 +255258,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01751" sboTerm="SBO:0000176" id="MAR01751" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01751" sboTerm="SBO:0000176" id="R_MAR01751" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -255263,7 +255267,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01751">
+            <rdf:Description rdf:about="#R_MAR01751">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.13.15"/>
@@ -255276,14 +255280,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00753m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00753m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00742m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00742m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -255292,7 +255296,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01752" sboTerm="SBO:0000185" id="MAR01752" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01752" sboTerm="SBO:0000185" id="R_MAR01752" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -255301,7 +255305,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01752">
+            <rdf:Description rdf:about="#R_MAR01752">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR125303"/>
@@ -255313,13 +255317,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02977m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02977m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02977c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02977c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01753" sboTerm="SBO:0000185" id="MAR01753" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01753" sboTerm="SBO:0000185" id="R_MAR01753" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -255328,7 +255332,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01753">
+            <rdf:Description rdf:about="#R_MAR01753">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR125308"/>
@@ -255340,13 +255344,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00742m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00742m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00742c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00742c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01754" sboTerm="SBO:0000176" id="MAR01754" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01754" sboTerm="SBO:0000176" id="R_MAR01754" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -255355,7 +255359,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01754">
+            <rdf:Description rdf:about="#R_MAR01754">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.7"/>
@@ -255368,20 +255372,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02977c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02977c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00615c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01334c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00615c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Fatp1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01756" sboTerm="SBO:0000176" id="MAR01756" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01756" sboTerm="SBO:0000176" id="R_MAR01756" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -255390,7 +255394,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01756">
+            <rdf:Description rdf:about="#R_MAR01756">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.7"/>
@@ -255403,20 +255407,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00742c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00742c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00743c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01334c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00743c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Fatp1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01758" sboTerm="SBO:0000185" id="MAR01758" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01758" sboTerm="SBO:0000185" id="R_MAR01758" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -255425,7 +255429,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01758">
+            <rdf:Description rdf:about="#R_MAR01758">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR125305"/>
@@ -255437,13 +255441,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00615c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00615c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00615x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00615x" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01759" sboTerm="SBO:0000185" id="MAR01759" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01759" sboTerm="SBO:0000185" id="R_MAR01759" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -255452,7 +255456,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01759">
+            <rdf:Description rdf:about="#R_MAR01759">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR125304"/>
@@ -255464,13 +255468,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00743c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00743c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00743x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00743x" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01760" sboTerm="SBO:0000176" id="MAR01760" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01760" sboTerm="SBO:0000176" id="R_MAR01760" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -255479,7 +255483,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01760">
+            <rdf:Description rdf:about="#R_MAR01760">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/5.1.99.4"/>
@@ -255492,16 +255496,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00615x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00615x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00036x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00036x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Amacr"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01761" sboTerm="SBO:0000176" id="MAR01761" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01761" sboTerm="SBO:0000176" id="R_MAR01761" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -255510,7 +255514,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01761">
+            <rdf:Description rdf:about="#R_MAR01761">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/5.1.99.4"/>
@@ -255523,16 +255527,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00743x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00743x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00037x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00037x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Amacr"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01762" sboTerm="SBO:0000176" id="MAR01762" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01762" sboTerm="SBO:0000176" id="R_MAR01762" name="cholesterol,NADPH:oxygen oxidoreductase (5alpha,6alpha-epoxidizing)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -255541,7 +255545,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01762">
+            <rdf:Description rdf:about="#R_MAR01762">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.13.15"/>
@@ -255555,15 +255559,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01450m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00625m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00625m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -255572,7 +255576,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01764" sboTerm="SBO:0000185" id="MAR01764" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01764" sboTerm="SBO:0000185" id="R_MAR01764" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -255580,7 +255584,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01764">
+            <rdf:Description rdf:about="#R_MAR01764">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_1764"/>
@@ -255590,13 +255594,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00625c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00625c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00625m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00625m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01766" sboTerm="SBO:0000176" id="MAR01766" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01766" sboTerm="SBO:0000176" id="R_MAR01766" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -255605,7 +255609,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01766">
+            <rdf:Description rdf:about="#R_MAR01766">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.181"/>
@@ -255618,19 +255622,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01448c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01448c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00979c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00979c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG7724"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01768" sboTerm="SBO:0000176" id="MAR01768" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01768" sboTerm="SBO:0000176" id="R_MAR01768" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -255639,7 +255643,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01768">
+            <rdf:Description rdf:about="#R_MAR01768">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.1.3"/>
@@ -255652,19 +255656,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00977c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00977c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01082c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01082c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Akr1B"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01769" sboTerm="SBO:0000176" id="MAR01769" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01769" sboTerm="SBO:0000176" id="R_MAR01769" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -255673,7 +255677,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01769">
+            <rdf:Description rdf:about="#R_MAR01769">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.1.3"/>
@@ -255686,19 +255690,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00979c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00979c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01084c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01084c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Akr1B"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01770" sboTerm="SBO:0000176" id="MAR01770" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01770" sboTerm="SBO:0000176" id="R_MAR01770" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -255707,7 +255711,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01770">
+            <rdf:Description rdf:about="#R_MAR01770">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.50"/>
@@ -255720,19 +255724,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01082c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01082c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01090c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01090c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Akr1B"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01771" sboTerm="SBO:0000176" id="MAR01771" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01771" sboTerm="SBO:0000176" id="R_MAR01771" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -255741,7 +255745,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01771">
+            <rdf:Description rdf:about="#R_MAR01771">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.50"/>
@@ -255754,19 +255758,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01084c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01084c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01093c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01093c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Akr1B"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01772" sboTerm="SBO:0000185" id="MAR01772" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01772" sboTerm="SBO:0000185" id="R_MAR01772" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -255775,7 +255779,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01772">
+            <rdf:Description rdf:about="#R_MAR01772">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR125311"/>
@@ -255787,13 +255791,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01090c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01090c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01090m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01090m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01774" sboTerm="SBO:0000185" id="MAR01774" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01774" sboTerm="SBO:0000185" id="R_MAR01774" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -255802,7 +255806,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01774">
+            <rdf:Description rdf:about="#R_MAR01774">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105426"/>
@@ -255815,13 +255819,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01093c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01093c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01093m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01093m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01778" sboTerm="SBO:0000176" id="MAR01778" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01778" sboTerm="SBO:0000176" id="R_MAR01778" name="cholest-5-ene-3beta,7alpha,25-triol:NAD+ 3-oxidoreductase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -255829,7 +255833,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01778">
+            <rdf:Description rdf:about="#R_MAR01778">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R08723"/>
@@ -255840,19 +255844,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01179r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01179r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01447r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01447r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG7724"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01783" sboTerm="SBO:0000176" id="MAR01783" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01783" sboTerm="SBO:0000176" id="R_MAR01783" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -255861,7 +255865,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01783">
+            <rdf:Description rdf:about="#R_MAR01783">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.145"/>
@@ -255874,19 +255878,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00592r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00592r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01182r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01182r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG7724"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01787" sboTerm="SBO:0000176" id="MAR01787" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01787" sboTerm="SBO:0000176" id="R_MAR01787" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -255894,7 +255898,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01787">
+            <rdf:Description rdf:about="#R_MAR01787">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR103726"/>
@@ -255905,16 +255909,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00623r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00623r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01182r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01182r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01790" sboTerm="SBO:0000176" id="MAR01790" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01790" sboTerm="SBO:0000176" id="R_MAR01790" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -255923,7 +255927,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01790">
+            <rdf:Description rdf:about="#R_MAR01790">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.13.15"/>
@@ -255935,13 +255939,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00623m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00623m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00763m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00763m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -255950,7 +255954,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01792" sboTerm="SBO:0000176" id="MAR01792" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01792" sboTerm="SBO:0000176" id="R_MAR01792" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -255959,7 +255963,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01792">
+            <rdf:Description rdf:about="#R_MAR01792">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.13.15"/>
@@ -255971,14 +255975,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00763m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00763m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00764m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02555m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00764m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02555m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -255987,7 +255991,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01794" sboTerm="SBO:0000176" id="MAR01794" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01794" sboTerm="SBO:0000176" id="R_MAR01794" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -255996,7 +256000,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01794">
+            <rdf:Description rdf:about="#R_MAR01794">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.13.15"/>
@@ -256008,15 +256012,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00764m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00764m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00761m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00761m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -256025,7 +256029,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01796" sboTerm="SBO:0000176" id="MAR01796" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01796" sboTerm="SBO:0000176" id="R_MAR01796" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -256034,7 +256038,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01796">
+            <rdf:Description rdf:about="#R_MAR01796">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.13.15"/>
@@ -256046,13 +256050,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00761m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00761m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01180m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01180m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -256061,7 +256065,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01797" sboTerm="SBO:0000176" id="MAR01797" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01797" sboTerm="SBO:0000176" id="R_MAR01797" name="cholest-5-ene-3beta,26-diol,[NADPH---hemoprotein reductase]:oxygen oxidoreductase (7alpha-hydroxylating)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -256070,7 +256074,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01797">
+            <rdf:Description rdf:about="#R_MAR01797">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.13.-"/>
@@ -256083,15 +256087,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00623c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00623c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01448c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01448c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -256101,7 +256105,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01798" sboTerm="SBO:0000176" id="MAR01798" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01798" sboTerm="SBO:0000176" id="R_MAR01798" name="cholest-5-ene-3beta,26-diol,[NADPH---hemoprotein reductase]:oxygen oxidoreductase (7alpha-hydroxylating)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -256110,7 +256114,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01798">
+            <rdf:Description rdf:about="#R_MAR01798">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.13.-"/>
@@ -256122,15 +256126,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00623m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00623m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01448m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01448m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -256140,7 +256144,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01800" sboTerm="SBO:0000176" id="MAR01800" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01800" sboTerm="SBO:0000176" id="R_MAR01800" name="cholest-5-ene-3beta,26-diol,[NADPH---hemoprotein reductase]:oxygen oxidoreductase (7alpha-hydroxylating)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -256149,7 +256153,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01800">
+            <rdf:Description rdf:about="#R_MAR01800">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.13.15"/>
@@ -256163,15 +256167,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01448m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555m" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02630m" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01448m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555m" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02630m" stoichiometry="2" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00761m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM02554m" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM00761m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM02554m" stoichiometry="2" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -256180,7 +256184,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01802" sboTerm="SBO:0000176" id="MAR01802" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01802" sboTerm="SBO:0000176" id="R_MAR01802" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -256189,7 +256193,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01802">
+            <rdf:Description rdf:about="#R_MAR01802">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.13.-"/>
@@ -256201,15 +256205,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01078m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01078m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01092m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01092m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -256219,7 +256223,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01803" sboTerm="SBO:0000176" id="MAR01803" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01803" sboTerm="SBO:0000176" id="R_MAR01803" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -256228,7 +256232,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01803">
+            <rdf:Description rdf:about="#R_MAR01803">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.13.15"/>
@@ -256240,13 +256244,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00750c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00750c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01092c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01092c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -256255,7 +256259,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01804" sboTerm="SBO:0000176" id="MAR01804" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01804" sboTerm="SBO:0000176" id="R_MAR01804" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -256264,7 +256268,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01804">
+            <rdf:Description rdf:about="#R_MAR01804">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.13.-"/>
@@ -256276,15 +256280,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01092c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01092c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01091c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01091c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -256294,7 +256298,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01805" sboTerm="SBO:0000176" id="MAR01805" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01805" sboTerm="SBO:0000176" id="R_MAR01805" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -256303,7 +256307,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01805">
+            <rdf:Description rdf:about="#R_MAR01805">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.13.-"/>
@@ -256314,15 +256318,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01092m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01092m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01091m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01091m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -256332,7 +256336,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01806" sboTerm="SBO:0000176" id="MAR01806" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01806" sboTerm="SBO:0000176" id="R_MAR01806" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -256341,7 +256345,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01806">
+            <rdf:Description rdf:about="#R_MAR01806">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.13.15"/>
@@ -256352,13 +256356,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00751m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00751m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01092m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01092m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -256367,7 +256371,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01807" sboTerm="SBO:0000176" id="MAR01807" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01807" sboTerm="SBO:0000176" id="R_MAR01807" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -256376,7 +256380,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01807">
+            <rdf:Description rdf:about="#R_MAR01807">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.13.15"/>
@@ -256388,11 +256392,11 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00751m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00751m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01091m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01091m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -256401,7 +256405,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01810" sboTerm="SBO:0000176" id="MAR01810" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01810" sboTerm="SBO:0000176" id="R_MAR01810" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -256410,7 +256414,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01810">
+            <rdf:Description rdf:about="#R_MAR01810">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.13.67"/>
@@ -256422,15 +256426,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01078r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01078r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01089r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01089r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -256439,7 +256443,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01811" sboTerm="SBO:0000176" id="MAR01811" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01811" sboTerm="SBO:0000176" id="R_MAR01811" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -256448,7 +256452,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01811">
+            <rdf:Description rdf:about="#R_MAR01811">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.13.15"/>
@@ -256460,15 +256464,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01089r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01089r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01087r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01087r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -256477,7 +256481,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01813" sboTerm="SBO:0000176" id="MAR01813" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01813" sboTerm="SBO:0000176" id="R_MAR01813" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -256486,7 +256490,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01813">
+            <rdf:Description rdf:about="#R_MAR01813">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.-"/>
@@ -256498,13 +256502,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00747r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00747r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01087r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01087r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -256529,7 +256533,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01815" sboTerm="SBO:0000176" id="MAR01815" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01815" sboTerm="SBO:0000176" id="R_MAR01815" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -256538,7 +256542,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01815">
+            <rdf:Description rdf:about="#R_MAR01815">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.13.67"/>
@@ -256550,15 +256554,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01089r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01089r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01085r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01085r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -256567,7 +256571,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01817" sboTerm="SBO:0000176" id="MAR01817" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01817" sboTerm="SBO:0000176" id="R_MAR01817" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -256576,7 +256580,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01817">
+            <rdf:Description rdf:about="#R_MAR01817">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.13.67"/>
@@ -256588,15 +256592,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01089r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01089r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01086r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01086r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -256605,7 +256609,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01819" sboTerm="SBO:0000176" id="MAR01819" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01819" sboTerm="SBO:0000176" id="R_MAR01819" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -256614,7 +256618,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01819">
+            <rdf:Description rdf:about="#R_MAR01819">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.13.67"/>
@@ -256626,15 +256630,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01089r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01089r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01088r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01088r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -256643,7 +256647,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01832" sboTerm="SBO:0000176" id="MAR01832" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01832" sboTerm="SBO:0000176" id="R_MAR01832" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -256652,7 +256656,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01832">
+            <rdf:Description rdf:about="#R_MAR01832">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.7"/>
@@ -256664,20 +256668,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00745c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00745c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01334c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01667c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01667c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Fatp1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01833" sboTerm="SBO:0000176" id="MAR01833" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01833" sboTerm="SBO:0000176" id="R_MAR01833" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -256686,7 +256690,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01833">
+            <rdf:Description rdf:about="#R_MAR01833">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.7"/>
@@ -256698,20 +256702,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00745r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00745r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01334r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01667r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01667r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Fatp1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01834" sboTerm="SBO:0000176" id="MAR01834" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01834" sboTerm="SBO:0000176" id="R_MAR01834" name="Glycodeoxycholate amidohydrolase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -256719,7 +256723,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01834">
+            <rdf:Description rdf:about="#R_MAR01834">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.5.1.24"/>
@@ -256732,16 +256736,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00745c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01986c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00745c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01989c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01989c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01836" sboTerm="SBO:0000185" id="MAR01836" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01836" sboTerm="SBO:0000185" id="R_MAR01836" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -256749,7 +256753,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01836">
+            <rdf:Description rdf:about="#R_MAR01836">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_1836"/>
@@ -256759,13 +256763,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01667c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01667c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01667x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01667x" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01838" sboTerm="SBO:0000176" id="MAR01838" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01838" sboTerm="SBO:0000176" id="R_MAR01838" name="lithocholate,[reduced NADPH---hemoprotein reductase]:oxygen oxidoreductase (6alpha-hydroxylating)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -256773,7 +256777,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01838">
+            <rdf:Description rdf:about="#R_MAR01838">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.13.97"/>
@@ -256786,15 +256790,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02402c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02402c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02155c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02155c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -256803,7 +256807,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01843" sboTerm="SBO:0000176" id="MAR01843" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01843" sboTerm="SBO:0000176" id="R_MAR01843" name="3&apos;-Phosphoadenylylsulfate:taurolithocholate sulfotransferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -256811,7 +256815,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01843">
+            <rdf:Description rdf:about="#R_MAR01843">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.8.2.14"/>
@@ -256824,19 +256828,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02682c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02965c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02682c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02965c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02681c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02952c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02681c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02952c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="St2"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01846" sboTerm="SBO:0000176" id="MAR01846" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01846" sboTerm="SBO:0000176" id="R_MAR01846" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -256844,7 +256848,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01846">
+            <rdf:Description rdf:about="#R_MAR01846">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.8.2.14"/>
@@ -256855,19 +256859,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02000c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02682c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02000c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02682c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02681c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02951c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02681c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02951c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="St2"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03908" sboTerm="SBO:0000176" id="MAR03908" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03908" sboTerm="SBO:0000176" id="R_MAR03908" name="L-Cysteine:oxygen oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -256876,7 +256880,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03908">
+            <rdf:Description rdf:about="#R_MAR03908">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.13.11.20"/>
@@ -256892,18 +256896,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01628c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01628c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00918c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM00918c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="2" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG5493"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03910" sboTerm="SBO:0000176" id="MAR03910" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03910" sboTerm="SBO:0000176" id="R_MAR03910" name="3-sulfino-L-alanine carboxy-lyase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -256912,7 +256916,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03910">
+            <rdf:Description rdf:about="#R_MAR03910">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.1.1.15"/>
@@ -256928,12 +256932,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00918c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM00918c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="2" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01596c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02157c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01596c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02157c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -256942,7 +256946,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03911" sboTerm="SBO:0000176" id="MAR03911" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB2N0">
+      <reaction metaid="R_MAR03911" sboTerm="SBO:0000176" id="R_MAR03911" name="hypotaurine:NAD+ oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB2N0">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -256951,7 +256955,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03911">
+            <rdf:Description rdf:about="#R_MAR03911">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.8.1.3"/>
@@ -256967,17 +256971,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02961c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02961c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02157c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02157c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR04679" sboTerm="SBO:0000176" id="MAR04679" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04679" sboTerm="SBO:0000176" id="R_MAR04679" name="Cysteamine:oxygen oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -256986,7 +256990,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04679">
+            <rdf:Description rdf:about="#R_MAR04679">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.13.11.19"/>
@@ -257002,18 +257006,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01627c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01627c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02157c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02157c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG7550"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08063" sboTerm="SBO:0000176" id="MAR08063" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08063" sboTerm="SBO:0000176" id="R_MAR08063" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -257021,7 +257025,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08063">
+            <rdf:Description rdf:about="#R_MAR08063">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/3SALAOX"/>
@@ -257033,15 +257037,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00918c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00918c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02350c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02350c" stoichiometry="2" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08064" sboTerm="SBO:0000176" id="MAR08064" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08064" sboTerm="SBO:0000176" id="R_MAR08064" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -257049,7 +257053,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#meta_MAR08064">
+            <rdf:Description rdf:about="#meta_R_MAR08064">
               <bqbiol:is>
                 <rdf:Bag/>
               </bqbiol:is>
@@ -257057,15 +257061,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00918m" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02630m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00918m" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02630m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02350m" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02350m" stoichiometry="2" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08065" sboTerm="SBO:0000176" id="MAR08065" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08065" sboTerm="SBO:0000176" id="R_MAR08065" name="3-sulfo-L-alanine carboxy-lyase (taurine-forming)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -257073,7 +257077,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08065">
+            <rdf:Description rdf:about="#R_MAR08065">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.1.1.15"/>
@@ -257090,12 +257094,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02350c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02350c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01596c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02961c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01596c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02961c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -257104,7 +257108,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08759" sboTerm="SBO:0000176" id="MAR08759" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB2N0">
+      <reaction metaid="R_MAR08759" sboTerm="SBO:0000176" id="R_MAR08759" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB2N0">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -257112,7 +257116,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08759">
+            <rdf:Description rdf:about="#R_MAR08759">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/HYPTROX"/>
@@ -257124,14 +257128,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02157c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02157c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02961c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02961c" stoichiometry="2" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01848" sboTerm="SBO:0000176" id="MAR01848" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01848" sboTerm="SBO:0000176" id="R_MAR01848" name="Cholate:CoA ligase (AMP-forming)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -257140,7 +257144,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01848">
+            <rdf:Description rdf:about="#R_MAR01848">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.7"/>
@@ -257156,20 +257160,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01334r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01514r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01514r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01371r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01445r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01445r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Fatp1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01850" sboTerm="SBO:0000185" id="MAR01850" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01850" sboTerm="SBO:0000185" id="R_MAR01850" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -257178,7 +257182,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01850">
+            <rdf:Description rdf:about="#R_MAR01850">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105409"/>
@@ -257189,13 +257193,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01445c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01445c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01445r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01445r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01852" sboTerm="SBO:0000185" id="MAR01852" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01852" sboTerm="SBO:0000185" id="R_MAR01852" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -257204,7 +257208,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01852">
+            <rdf:Description rdf:about="#R_MAR01852">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105413"/>
@@ -257215,18 +257219,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01988c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02357c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01988c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02357c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01988e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02357e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01988e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02357e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG11655"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01853" sboTerm="SBO:0000185" id="MAR01853" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01853" sboTerm="SBO:0000185" id="R_MAR01853" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -257235,7 +257239,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01853">
+            <rdf:Description rdf:about="#R_MAR01853">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105414"/>
@@ -257246,21 +257250,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01435c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01435c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01435e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01435e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="MRP"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01854" sboTerm="SBO:0000185" id="MAR01854" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01854" sboTerm="SBO:0000185" id="R_MAR01854" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -257269,7 +257273,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01854">
+            <rdf:Description rdf:about="#R_MAR01854">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105415"/>
@@ -257279,13 +257283,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01435c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01435c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01435r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01435r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01855" sboTerm="SBO:0000185" id="MAR01855" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01855" sboTerm="SBO:0000185" id="R_MAR01855" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -257294,7 +257298,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01855">
+            <rdf:Description rdf:about="#R_MAR01855">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/r1015"/>
@@ -257304,18 +257308,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02963e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02963e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02963c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02963c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG11655"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01857" sboTerm="SBO:0000185" id="MAR01857" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01857" sboTerm="SBO:0000185" id="R_MAR01857" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -257324,7 +257328,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01857">
+            <rdf:Description rdf:about="#R_MAR01857">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR104744"/>
@@ -257334,18 +257338,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371x" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02040x" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02963x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371x" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02040x" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02963x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285x" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02039x" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02751x" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02963e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285x" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02039x" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02751x" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02963e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01859" sboTerm="SBO:0000185" id="MAR01859" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01859" sboTerm="SBO:0000185" id="R_MAR01859" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -257353,7 +257357,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01859">
+            <rdf:Description rdf:about="#R_MAR01859">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105430"/>
@@ -257364,15 +257368,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01987c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02357c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01987c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02357c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01987e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02357e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01987e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02357e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01861" sboTerm="SBO:0000185" id="MAR01861" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01861" sboTerm="SBO:0000185" id="R_MAR01861" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -257381,7 +257385,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01861">
+            <rdf:Description rdf:about="#R_MAR01861">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105431"/>
@@ -257391,18 +257395,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371x" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02040x" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02962x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371x" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02040x" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02962x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285x" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02039x" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02751x" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02962e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285x" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02039x" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02751x" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02962e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01862" sboTerm="SBO:0000185" id="MAR01862" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01862" sboTerm="SBO:0000185" id="R_MAR01862" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -257411,7 +257415,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01862">
+            <rdf:Description rdf:about="#R_MAR01862">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/r1163"/>
@@ -257422,12 +257426,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01988e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01988e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01988c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01988c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -257436,7 +257440,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01863" sboTerm="SBO:0000185" id="MAR01863" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01863" sboTerm="SBO:0000185" id="R_MAR01863" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -257445,7 +257449,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01863">
+            <rdf:Description rdf:about="#R_MAR01863">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GCHOLAt2"/>
@@ -257458,12 +257462,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01988e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01988e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="2" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01988c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01988c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="2" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -257472,7 +257476,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01864" sboTerm="SBO:0000185" id="MAR01864" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01864" sboTerm="SBO:0000185" id="R_MAR01864" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -257481,7 +257485,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01864">
+            <rdf:Description rdf:about="#R_MAR01864">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105478"/>
@@ -257492,12 +257496,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01435e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01435e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="2" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01435c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01435c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="2" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -257506,7 +257510,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01865" sboTerm="SBO:0000185" id="MAR01865" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01865" sboTerm="SBO:0000185" id="R_MAR01865" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -257515,7 +257519,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01865">
+            <rdf:Description rdf:about="#R_MAR01865">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/TCHOLAt2"/>
@@ -257528,12 +257532,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02519e" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02963e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02963e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02519c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02963c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02963c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -257542,7 +257546,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01866" sboTerm="SBO:0000185" id="MAR01866" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01866" sboTerm="SBO:0000185" id="R_MAR01866" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -257551,7 +257555,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01866">
+            <rdf:Description rdf:about="#R_MAR01866">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105479"/>
@@ -257563,12 +257567,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02519e" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02962e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02962e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02519c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02962c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02962c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -257577,7 +257581,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01867" sboTerm="SBO:0000185" id="MAR01867" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01867" sboTerm="SBO:0000185" id="R_MAR01867" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -257586,7 +257590,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01867">
+            <rdf:Description rdf:about="#R_MAR01867">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105480"/>
@@ -257598,12 +257602,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01987e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01987e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="2" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01987c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01987c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="2" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -257612,7 +257616,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01868" sboTerm="SBO:0000185" id="MAR01868" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01868" sboTerm="SBO:0000185" id="R_MAR01868" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 2</p>
@@ -257621,7 +257625,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01868">
+            <rdf:Description rdf:about="#R_MAR01868">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GCHOLAt3"/>
@@ -257636,15 +257640,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01988c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01988c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01988e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01988e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -257656,7 +257660,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01870" sboTerm="SBO:0000185" id="MAR01870" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01870" sboTerm="SBO:0000185" id="R_MAR01870" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 2</p>
@@ -257665,7 +257669,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01870">
+            <rdf:Description rdf:about="#R_MAR01870">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/TCHOLAt3"/>
@@ -257680,15 +257684,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02963c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02963c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02963e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02963e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -257700,7 +257704,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01872" sboTerm="SBO:0000185" id="MAR01872" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01872" sboTerm="SBO:0000185" id="R_MAR01872" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -257709,7 +257713,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01872">
+            <rdf:Description rdf:about="#R_MAR01872">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/r1028"/>
@@ -257723,15 +257727,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02962c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02962c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02962e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02962e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -257743,7 +257747,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01874" sboTerm="SBO:0000185" id="MAR01874" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01874" sboTerm="SBO:0000185" id="R_MAR01874" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -257752,7 +257756,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01874">
+            <rdf:Description rdf:about="#R_MAR01874">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/r1026"/>
@@ -257765,15 +257769,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01987c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01987c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01987e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01987e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -257785,7 +257789,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01875" sboTerm="SBO:0000185" id="MAR01875" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01875" sboTerm="SBO:0000185" id="R_MAR01875" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -257794,7 +257798,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01875">
+            <rdf:Description rdf:about="#R_MAR01875">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106036"/>
@@ -257806,14 +257810,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01445e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02026c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01445e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01445c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02026e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01445c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -257826,7 +257830,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01876" sboTerm="SBO:0000185" id="MAR01876" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01876" sboTerm="SBO:0000185" id="R_MAR01876" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -257835,7 +257839,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01876">
+            <rdf:Description rdf:about="#R_MAR01876">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106037"/>
@@ -257847,14 +257851,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01988e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02026c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01988e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01988c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02026e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01988c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -257867,7 +257871,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01877" sboTerm="SBO:0000185" id="MAR01877" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01877" sboTerm="SBO:0000185" id="R_MAR01877" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -257876,7 +257880,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01877">
+            <rdf:Description rdf:about="#R_MAR01877">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106038"/>
@@ -257888,14 +257892,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02026c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02963e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02963e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02026e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02963c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02963c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -257908,7 +257912,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01878" sboTerm="SBO:0000185" id="MAR01878" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01878" sboTerm="SBO:0000185" id="R_MAR01878" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -257916,7 +257920,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01878">
+            <rdf:Description rdf:about="#R_MAR01878">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/TCHOLAt"/>
@@ -257928,12 +257932,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02963e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02963e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02963c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02963c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -257946,7 +257950,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01879" sboTerm="SBO:0000185" id="MAR01879" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01879" sboTerm="SBO:0000185" id="R_MAR01879" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -257955,7 +257959,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01879">
+            <rdf:Description rdf:about="#R_MAR01879">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106039"/>
@@ -257967,14 +257971,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02026c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02962e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02962e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02026e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02962c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02962c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -257987,7 +257991,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01880" sboTerm="SBO:0000185" id="MAR01880" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01880" sboTerm="SBO:0000185" id="R_MAR01880" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -257996,7 +258000,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01880">
+            <rdf:Description rdf:about="#R_MAR01880">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106048"/>
@@ -258008,14 +258012,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01445e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01980c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01445e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01980c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01445c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01980e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01445c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01980e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -258028,7 +258032,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01881" sboTerm="SBO:0000185" id="MAR01881" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01881" sboTerm="SBO:0000185" id="R_MAR01881" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -258037,7 +258041,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01881">
+            <rdf:Description rdf:about="#R_MAR01881">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106049"/>
@@ -258049,14 +258053,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01445e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02900c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01445e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02900c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01445c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02900e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01445c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02900e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -258069,7 +258073,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01882" sboTerm="SBO:0000185" id="MAR01882" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01882" sboTerm="SBO:0000185" id="R_MAR01882" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -258078,7 +258082,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01882">
+            <rdf:Description rdf:about="#R_MAR01882">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106050"/>
@@ -258090,14 +258094,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01445e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02901c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01445e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02901c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01445c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02901e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01445c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02901e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -258110,7 +258114,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01883" sboTerm="SBO:0000185" id="MAR01883" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01883" sboTerm="SBO:0000185" id="R_MAR01883" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -258119,7 +258123,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01883">
+            <rdf:Description rdf:about="#R_MAR01883">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106051"/>
@@ -258131,14 +258135,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01980c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01988e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01980c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01988e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01980e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01988c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01980e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01988c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -258151,7 +258155,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01884" sboTerm="SBO:0000185" id="MAR01884" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01884" sboTerm="SBO:0000185" id="R_MAR01884" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -258160,7 +258164,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01884">
+            <rdf:Description rdf:about="#R_MAR01884">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106052"/>
@@ -258172,14 +258176,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01988e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02900c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01988e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02900c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01988c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02900e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01988c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02900e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -258192,7 +258196,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01885" sboTerm="SBO:0000185" id="MAR01885" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01885" sboTerm="SBO:0000185" id="R_MAR01885" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -258201,7 +258205,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01885">
+            <rdf:Description rdf:about="#R_MAR01885">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106053"/>
@@ -258213,14 +258217,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01988e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02901c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01988e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02901c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01988c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02901e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01988c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02901e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -258233,7 +258237,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01886" sboTerm="SBO:0000185" id="MAR01886" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01886" sboTerm="SBO:0000185" id="R_MAR01886" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -258242,7 +258246,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01886">
+            <rdf:Description rdf:about="#R_MAR01886">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106054"/>
@@ -258253,14 +258257,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01435e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01980c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01435e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01980c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01435c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01980e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01435c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01980e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -258273,7 +258277,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01887" sboTerm="SBO:0000185" id="MAR01887" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01887" sboTerm="SBO:0000185" id="R_MAR01887" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -258282,7 +258286,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01887">
+            <rdf:Description rdf:about="#R_MAR01887">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106055"/>
@@ -258293,14 +258297,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01435e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02900c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01435e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02900c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01435c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02900e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01435c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02900e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -258313,7 +258317,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01888" sboTerm="SBO:0000185" id="MAR01888" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01888" sboTerm="SBO:0000185" id="R_MAR01888" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -258322,7 +258326,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01888">
+            <rdf:Description rdf:about="#R_MAR01888">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106056"/>
@@ -258333,14 +258337,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01435e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02901c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01435e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02901c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01435c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02901e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01435c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02901e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -258353,7 +258357,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01889" sboTerm="SBO:0000185" id="MAR01889" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01889" sboTerm="SBO:0000185" id="R_MAR01889" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -258362,7 +258366,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01889">
+            <rdf:Description rdf:about="#R_MAR01889">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106057"/>
@@ -258374,14 +258378,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01980c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02963e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01980c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02963e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01980e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02963c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01980e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02963c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -258394,7 +258398,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01890" sboTerm="SBO:0000185" id="MAR01890" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01890" sboTerm="SBO:0000185" id="R_MAR01890" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -258403,7 +258407,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01890">
+            <rdf:Description rdf:about="#R_MAR01890">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106058"/>
@@ -258415,14 +258419,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02900c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02963e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02900c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02963e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02900e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02963c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02900e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02963c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -258435,7 +258439,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01891" sboTerm="SBO:0000185" id="MAR01891" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01891" sboTerm="SBO:0000185" id="R_MAR01891" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -258444,7 +258448,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01891">
+            <rdf:Description rdf:about="#R_MAR01891">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106059"/>
@@ -258456,14 +258460,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02901c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02963e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02901c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02963e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02901e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02963c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02901e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02963c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -258476,7 +258480,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01892" sboTerm="SBO:0000185" id="MAR01892" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01892" sboTerm="SBO:0000185" id="R_MAR01892" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -258485,7 +258489,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01892">
+            <rdf:Description rdf:about="#R_MAR01892">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106060"/>
@@ -258497,14 +258501,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01980c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02962e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01980c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02962e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01980e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02962c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01980e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02962c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -258517,7 +258521,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01893" sboTerm="SBO:0000185" id="MAR01893" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01893" sboTerm="SBO:0000185" id="R_MAR01893" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -258526,7 +258530,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01893">
+            <rdf:Description rdf:about="#R_MAR01893">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106061"/>
@@ -258538,14 +258542,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02900c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02962e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02900c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02962e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02900e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02962c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02900e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02962c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -258558,7 +258562,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01894" sboTerm="SBO:0000185" id="MAR01894" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01894" sboTerm="SBO:0000185" id="R_MAR01894" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -258567,7 +258571,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01894">
+            <rdf:Description rdf:about="#R_MAR01894">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106062"/>
@@ -258579,14 +258583,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02901c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02962e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02901c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02962e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02901e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02962c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02901e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02962c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -258599,7 +258603,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01895" sboTerm="SBO:0000185" id="MAR01895" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01895" sboTerm="SBO:0000185" id="R_MAR01895" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 2</p>
@@ -258608,7 +258612,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01895">
+            <rdf:Description rdf:about="#R_MAR01895">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR96252"/>
@@ -258622,21 +258626,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01397r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01397r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01397e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01397e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="MRP"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01896" sboTerm="SBO:0000185" id="MAR01896" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01896" sboTerm="SBO:0000185" id="R_MAR01896" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 2</p>
@@ -258645,7 +258649,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01896">
+            <rdf:Description rdf:about="#R_MAR01896">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/BILDGLCURte"/>
@@ -258660,21 +258664,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01397c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01397c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01397e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01397e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="MRP"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01897" sboTerm="SBO:0000185" id="MAR01897" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01897" sboTerm="SBO:0000185" id="R_MAR01897" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -258683,7 +258687,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01897">
+            <rdf:Description rdf:about="#R_MAR01897">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_1897"/>
@@ -258696,21 +258700,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01398r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01398r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01398e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01398e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="MRP"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01403" sboTerm="SBO:0000176" id="MAR01403" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01403" sboTerm="SBO:0000176" id="R_MAR01403" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -258719,7 +258723,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01403">
+            <rdf:Description rdf:about="#R_MAR01403">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR103728"/>
@@ -258731,15 +258735,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01198c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01198c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01689c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02631c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01689c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02631c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01404" sboTerm="SBO:0000176" id="MAR01404" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01404" sboTerm="SBO:0000176" id="R_MAR01404" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -258748,7 +258752,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01404">
+            <rdf:Description rdf:about="#R_MAR01404">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR103732"/>
@@ -258760,15 +258764,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01215c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01215c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01689c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02631c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01689c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02631c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01405" sboTerm="SBO:0000176" id="MAR01405" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01405" sboTerm="SBO:0000176" id="R_MAR01405" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -258777,7 +258781,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01405">
+            <rdf:Description rdf:about="#R_MAR01405">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_1405"/>
@@ -258787,15 +258791,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01689c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02631c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01689c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02631c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00275c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00275c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01406" sboTerm="SBO:0000176" id="MAR01406" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01406" sboTerm="SBO:0000176" id="R_MAR01406" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -258804,7 +258808,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01406">
+            <rdf:Description rdf:about="#R_MAR01406">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR103727"/>
@@ -258816,15 +258820,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00303c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00303c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01689c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02631c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01689c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02631c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01407" sboTerm="SBO:0000176" id="MAR01407" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01407" sboTerm="SBO:0000176" id="R_MAR01407" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -258833,7 +258837,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01407">
+            <rdf:Description rdf:about="#R_MAR01407">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR103729"/>
@@ -258845,15 +258849,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00372c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00372c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01689c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02631c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01689c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02631c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01408" sboTerm="SBO:0000176" id="MAR01408" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01408" sboTerm="SBO:0000176" id="R_MAR01408" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -258862,7 +258866,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01408">
+            <rdf:Description rdf:about="#R_MAR01408">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR103731"/>
@@ -258874,15 +258878,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00404c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00404c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01689c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02631c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01689c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02631c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01409" sboTerm="SBO:0000176" id="MAR01409" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01409" sboTerm="SBO:0000176" id="R_MAR01409" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -258891,7 +258895,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01409">
+            <rdf:Description rdf:about="#R_MAR01409">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR103730"/>
@@ -258903,15 +258907,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00418c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00418c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01689c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02631c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01689c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02631c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01410" sboTerm="SBO:0000176" id="MAR01410" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01410" sboTerm="SBO:0000176" id="R_MAR01410" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -258920,7 +258924,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01410">
+            <rdf:Description rdf:about="#R_MAR01410">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR103733"/>
@@ -258932,16 +258936,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01689c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM01689c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="3" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00303c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00984c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00303c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00984c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01411" sboTerm="SBO:0000176" id="MAR01411" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01411" sboTerm="SBO:0000176" id="R_MAR01411" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -258950,7 +258954,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01411">
+            <rdf:Description rdf:about="#R_MAR01411">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR103734"/>
@@ -258962,16 +258966,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01689c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM01689c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="3" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00303c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01192c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00303c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01192c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01412" sboTerm="SBO:0000176" id="MAR01412" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01412" sboTerm="SBO:0000176" id="R_MAR01412" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -258980,7 +258984,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01412">
+            <rdf:Description rdf:about="#R_MAR01412">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR103735"/>
@@ -258992,16 +258996,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01689c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM01689c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="3" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00271c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00372c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00271c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00372c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01413" sboTerm="SBO:0000176" id="MAR01413" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01413" sboTerm="SBO:0000176" id="R_MAR01413" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -259010,7 +259014,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01413">
+            <rdf:Description rdf:about="#R_MAR01413">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR103736"/>
@@ -259022,16 +259026,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01689c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM01689c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="3" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00299c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01198c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00299c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01198c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01414" sboTerm="SBO:0000176" id="MAR01414" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01414" sboTerm="SBO:0000176" id="R_MAR01414" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -259040,7 +259044,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01414">
+            <rdf:Description rdf:about="#R_MAR01414">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR103737"/>
@@ -259052,16 +259056,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01689c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM01689c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="3" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00355c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00418c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00355c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00418c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01415" sboTerm="SBO:0000176" id="MAR01415" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01415" sboTerm="SBO:0000176" id="R_MAR01415" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -259070,7 +259074,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01415">
+            <rdf:Description rdf:about="#R_MAR01415">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/RE2860C"/>
@@ -259080,16 +259084,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00275c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01368c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00275c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01368c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00368c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02489c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00368c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02489c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01416" sboTerm="SBO:0000176" id="MAR01416" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01416" sboTerm="SBO:0000176" id="R_MAR01416" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -259098,7 +259102,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01416">
+            <rdf:Description rdf:about="#R_MAR01416">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR103739"/>
@@ -259110,16 +259114,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01689c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM01689c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="3" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00372c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00415c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00372c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00415c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01417" sboTerm="SBO:0000176" id="MAR01417" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01417" sboTerm="SBO:0000176" id="R_MAR01417" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -259128,7 +259132,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01417">
+            <rdf:Description rdf:about="#R_MAR01417">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR103738"/>
@@ -259140,16 +259144,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01689c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM01689c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="3" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00404c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00589c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00404c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00589c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01418" sboTerm="SBO:0000176" id="MAR01418" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01418" sboTerm="SBO:0000176" id="R_MAR01418" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -259158,7 +259162,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01418">
+            <rdf:Description rdf:about="#R_MAR01418">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR103740"/>
@@ -259169,15 +259173,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00984c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM00984c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="2" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00997c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00997c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01419" sboTerm="SBO:0000176" id="MAR01419" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01419" sboTerm="SBO:0000176" id="R_MAR01419" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -259186,7 +259190,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01419">
+            <rdf:Description rdf:about="#R_MAR01419">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR103741"/>
@@ -259197,15 +259201,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00984c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM00984c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="2" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00999c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00999c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01420" sboTerm="SBO:0000176" id="MAR01420" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01420" sboTerm="SBO:0000176" id="R_MAR01420" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -259214,7 +259218,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01420">
+            <rdf:Description rdf:about="#R_MAR01420">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR103742"/>
@@ -259225,16 +259229,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01192c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01368c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01192c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01368c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01194c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01655c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01194c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01655c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01421" sboTerm="SBO:0000176" id="MAR01421" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01421" sboTerm="SBO:0000176" id="R_MAR01421" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -259243,7 +259247,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01421">
+            <rdf:Description rdf:about="#R_MAR01421">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR103743"/>
@@ -259254,16 +259258,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01192c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01368c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01192c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01368c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01193c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01655c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01193c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01655c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01422" sboTerm="SBO:0000176" id="MAR01422" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01422" sboTerm="SBO:0000176" id="R_MAR01422" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -259272,7 +259276,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01422">
+            <rdf:Description rdf:about="#R_MAR01422">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR103746"/>
@@ -259284,16 +259288,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00271c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01368c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00271c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01368c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00273c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01655c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00273c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01655c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01423" sboTerm="SBO:0000176" id="MAR01423" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01423" sboTerm="SBO:0000176" id="R_MAR01423" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -259302,7 +259306,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01423">
+            <rdf:Description rdf:about="#R_MAR01423">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR103746"/>
@@ -259314,16 +259318,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00271c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01368c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00271c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01368c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00272c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01655c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00272c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01655c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01424" sboTerm="SBO:0000176" id="MAR01424" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01424" sboTerm="SBO:0000176" id="R_MAR01424" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -259332,7 +259336,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01424">
+            <rdf:Description rdf:about="#R_MAR01424">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR103744"/>
@@ -259343,16 +259347,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00299c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01368c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00299c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01368c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00301c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01655c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00301c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01655c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01425" sboTerm="SBO:0000176" id="MAR01425" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01425" sboTerm="SBO:0000176" id="R_MAR01425" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -259361,7 +259365,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01425">
+            <rdf:Description rdf:about="#R_MAR01425">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR103745"/>
@@ -259372,16 +259376,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00299c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01368c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00299c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01368c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00300c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01655c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00300c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01655c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01426" sboTerm="SBO:0000176" id="MAR01426" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01426" sboTerm="SBO:0000176" id="R_MAR01426" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -259390,7 +259394,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01426">
+            <rdf:Description rdf:about="#R_MAR01426">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR103749"/>
@@ -259401,16 +259405,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00355c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01368c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00355c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01368c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00359c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01655c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00359c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01655c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01427" sboTerm="SBO:0000176" id="MAR01427" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01427" sboTerm="SBO:0000176" id="R_MAR01427" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -259419,7 +259423,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01427">
+            <rdf:Description rdf:about="#R_MAR01427">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR103750"/>
@@ -259430,15 +259434,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00355c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM00355c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="2" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00358c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00358c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01428" sboTerm="SBO:0000176" id="MAR01428" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01428" sboTerm="SBO:0000176" id="R_MAR01428" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -259447,7 +259451,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01428">
+            <rdf:Description rdf:about="#R_MAR01428">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR103747"/>
@@ -259458,16 +259462,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00368c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01368c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00368c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01368c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00370c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01655c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00370c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01655c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01429" sboTerm="SBO:0000176" id="MAR01429" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01429" sboTerm="SBO:0000176" id="R_MAR01429" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -259476,7 +259480,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01429">
+            <rdf:Description rdf:about="#R_MAR01429">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR103748"/>
@@ -259487,16 +259491,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00368c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01368c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00368c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01368c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00369c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01655c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00369c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01655c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01430" sboTerm="SBO:0000176" id="MAR01430" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01430" sboTerm="SBO:0000176" id="R_MAR01430" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -259505,7 +259509,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01430">
+            <rdf:Description rdf:about="#R_MAR01430">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR103751"/>
@@ -259516,15 +259520,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00415c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM00415c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="2" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00417c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00417c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01431" sboTerm="SBO:0000176" id="MAR01431" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01431" sboTerm="SBO:0000176" id="R_MAR01431" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -259533,7 +259537,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01431">
+            <rdf:Description rdf:about="#R_MAR01431">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR103752"/>
@@ -259544,15 +259548,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00415c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM00415c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="2" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00416c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00416c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01432" sboTerm="SBO:0000176" id="MAR01432" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01432" sboTerm="SBO:0000176" id="R_MAR01432" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -259561,7 +259565,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01432">
+            <rdf:Description rdf:about="#R_MAR01432">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR103753"/>
@@ -259572,16 +259576,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00589c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01368c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00589c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01368c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00593c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01655c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00593c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01655c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01433" sboTerm="SBO:0000176" id="MAR01433" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01433" sboTerm="SBO:0000176" id="R_MAR01433" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -259590,7 +259594,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01433">
+            <rdf:Description rdf:about="#R_MAR01433">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR103754"/>
@@ -259601,16 +259605,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00589c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01368c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00589c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01368c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00594c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01655c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00594c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01655c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08264" sboTerm="SBO:0000176" id="MAR08264" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08264" sboTerm="SBO:0000176" id="R_MAR08264" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -259618,7 +259622,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08264">
+            <rdf:Description rdf:about="#R_MAR08264">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.65"/>
@@ -259632,19 +259636,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01950g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03090g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01950g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03090g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01850g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01948g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01850g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01948g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039g" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="FucTA"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08268" sboTerm="SBO:0000176" id="MAR08268" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08268" sboTerm="SBO:0000176" id="R_MAR08268" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -259652,7 +259656,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08268">
+            <rdf:Description rdf:about="#R_MAR08268">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.65"/>
@@ -259666,19 +259670,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01950g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03091g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01950g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03091g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01859g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01948g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01859g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01948g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039g" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="FucTA"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08271" sboTerm="SBO:0000176" id="MAR08271" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08271" sboTerm="SBO:0000176" id="R_MAR08271" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -259686,7 +259690,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08271">
+            <rdf:Description rdf:about="#R_MAR08271">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.65"/>
@@ -259699,19 +259703,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01950g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03092g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01950g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03092g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01948g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01999g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01948g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01999g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039g" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="FucTA"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08275" sboTerm="SBO:0000176" id="MAR08275" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08275" sboTerm="SBO:0000176" id="R_MAR08275" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -259719,7 +259723,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08275">
+            <rdf:Description rdf:about="#R_MAR08275">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.206"/>
@@ -259733,19 +259737,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02328g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03111g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02328g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03111g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02346g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02346g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106g" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="brn"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08276" sboTerm="SBO:0000176" id="MAR08276" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08276" sboTerm="SBO:0000176" id="R_MAR08276" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -259753,7 +259757,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08276">
+            <rdf:Description rdf:about="#R_MAR08276">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.-"/>
@@ -259767,19 +259771,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02346g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03107g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02346g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03107g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02347g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02347g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106g" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG30036"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08277" sboTerm="SBO:0000176" id="MAR08277" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08277" sboTerm="SBO:0000176" id="R_MAR08277" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -259787,7 +259791,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08277">
+            <rdf:Description rdf:about="#R_MAR08277">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.-"/>
@@ -259800,19 +259804,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02346g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03107g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02346g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03107g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02330g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02330g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106g" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="brn"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08278" sboTerm="SBO:0000176" id="MAR08278" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08278" sboTerm="SBO:0000176" id="R_MAR08278" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -259820,7 +259824,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08278">
+            <rdf:Description rdf:about="#R_MAR08278">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.-"/>
@@ -259833,19 +259837,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02330g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03111g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02330g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03111g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02593g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02593g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106g" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="brn"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08279" sboTerm="SBO:0000176" id="MAR08279" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08279" sboTerm="SBO:0000176" id="R_MAR08279" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -259853,7 +259857,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08279">
+            <rdf:Description rdf:about="#R_MAR08279">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.-"/>
@@ -259865,19 +259869,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02593g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03107g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02593g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03107g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02594c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02594c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106g" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="brn"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08285" sboTerm="SBO:0000176" id="MAR08285" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08285" sboTerm="SBO:0000176" id="R_MAR08285" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -259885,7 +259889,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08285">
+            <rdf:Description rdf:about="#R_MAR08285">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.-"/>
@@ -259898,19 +259902,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01262g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03107g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01262g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03107g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01907g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01907g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106g" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="brn"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08287" sboTerm="SBO:0000176" id="MAR08287" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08287" sboTerm="SBO:0000176" id="R_MAR08287" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -259918,7 +259922,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08287">
+            <rdf:Description rdf:about="#R_MAR08287">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.-"/>
@@ -259931,19 +259935,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01950g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03095g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01950g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03095g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01948g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01999g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01948g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01999g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039g" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="FucTA"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08293" sboTerm="SBO:0000176" id="MAR08293" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08293" sboTerm="SBO:0000176" id="R_MAR08293" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -259951,7 +259955,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08293">
+            <rdf:Description rdf:about="#R_MAR08293">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.-"/>
@@ -259964,19 +259968,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01263g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03107g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01263g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03107g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01908g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01908g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106g" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="brn"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08305" sboTerm="SBO:0000176" id="MAR08305" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08305" sboTerm="SBO:0000176" id="R_MAR08305" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -259984,7 +259988,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08305">
+            <rdf:Description rdf:about="#R_MAR08305">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/B3GNT12g"/>
@@ -259997,19 +260001,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02594g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03111g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02594g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03111g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02595g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02595g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106g" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="brn"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08306" sboTerm="SBO:0000176" id="MAR08306" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08306" sboTerm="SBO:0000176" id="R_MAR08306" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -260017,7 +260021,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08306">
+            <rdf:Description rdf:about="#R_MAR08306">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.-"/>
@@ -260031,19 +260035,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02595g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03107g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02595g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03107g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02596g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02596g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106g" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="brn"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08307" sboTerm="SBO:0000176" id="MAR08307" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08307" sboTerm="SBO:0000176" id="R_MAR08307" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -260051,7 +260055,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08307">
+            <rdf:Description rdf:about="#R_MAR08307">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.-"/>
@@ -260064,19 +260068,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01950g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02596g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01950g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02596g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01858g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01948g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01858g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01948g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039g" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="FucTA"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08308" sboTerm="SBO:0000176" id="MAR08308" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08308" sboTerm="SBO:0000176" id="R_MAR08308" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -260084,7 +260088,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08308">
+            <rdf:Description rdf:about="#R_MAR08308">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.-"/>
@@ -260097,19 +260101,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01858g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01950g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01858g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01950g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01854g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01948g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01854g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01948g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039g" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="FucTA"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08309" sboTerm="SBO:0000176" id="MAR08309" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08309" sboTerm="SBO:0000176" id="R_MAR08309" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -260117,7 +260121,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08309">
+            <rdf:Description rdf:about="#R_MAR08309">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.-"/>
@@ -260130,19 +260134,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01854g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01950g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01854g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01950g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01852g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01948g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01852g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01948g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039g" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="FucTA"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08317" sboTerm="SBO:0000176" id="MAR08317" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08317" sboTerm="SBO:0000176" id="R_MAR08317" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -260150,7 +260154,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08317">
+            <rdf:Description rdf:about="#R_MAR08317">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.-"/>
@@ -260162,19 +260166,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01880g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03107g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01880g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03107g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02186c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02186c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106g" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="brn"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08319" sboTerm="SBO:0000176" id="MAR08319" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08319" sboTerm="SBO:0000176" id="R_MAR08319" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -260182,7 +260186,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08319">
+            <rdf:Description rdf:about="#R_MAR08319">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FUT34g"/>
@@ -260194,19 +260198,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01264g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01950g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01264g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01950g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01948g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02198g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01948g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02198g" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="FucTA"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08322" sboTerm="SBO:0000176" id="MAR08322" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08322" sboTerm="SBO:0000176" id="R_MAR08322" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -260214,7 +260218,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08322">
+            <rdf:Description rdf:about="#R_MAR08322">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.-"/>
@@ -260227,19 +260231,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01950g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02330g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01950g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02330g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01948g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02331g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01948g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02331g" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="FucTA"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08326" sboTerm="SBO:0000176" id="MAR08326" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08326" sboTerm="SBO:0000176" id="R_MAR08326" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -260247,7 +260251,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08326">
+            <rdf:Description rdf:about="#R_MAR08326">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.-"/>
@@ -260261,19 +260265,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01950g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02904g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01950g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02904g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01948g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02199g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01948g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02199g" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="FucTA"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08330" sboTerm="SBO:0000176" id="MAR08330" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08330" sboTerm="SBO:0000176" id="R_MAR08330" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -260281,7 +260285,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08330">
+            <rdf:Description rdf:about="#R_MAR08330">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.-"/>
@@ -260294,19 +260298,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01950g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03137g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01950g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03137g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01855g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01948g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01855g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01948g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039g" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="FucTA"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08331" sboTerm="SBO:0000176" id="MAR08331" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08331" sboTerm="SBO:0000176" id="R_MAR08331" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -260314,7 +260318,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08331">
+            <rdf:Description rdf:about="#R_MAR08331">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.-"/>
@@ -260327,19 +260331,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01855g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01950g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01855g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01950g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01853g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01948g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01853g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01948g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039g" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="FucTA"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08332" sboTerm="SBO:0000176" id="MAR08332" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08332" sboTerm="SBO:0000176" id="R_MAR08332" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -260347,7 +260351,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08332">
+            <rdf:Description rdf:about="#R_MAR08332">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.-"/>
@@ -260361,19 +260365,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01950g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02594g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01950g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02594g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01948g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03133g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01948g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03133g" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="FucTA"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08333" sboTerm="SBO:0000176" id="MAR08333" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08333" sboTerm="SBO:0000176" id="R_MAR08333" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -260381,7 +260385,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08333">
+            <rdf:Description rdf:about="#R_MAR08333">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.-"/>
@@ -260394,19 +260398,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01950g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03133g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01950g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03133g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01851g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01948g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01851g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01948g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039g" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="FucTA"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08334" sboTerm="SBO:0000176" id="MAR08334" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08334" sboTerm="SBO:0000176" id="R_MAR08334" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -260414,7 +260418,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08334">
+            <rdf:Description rdf:about="#R_MAR08334">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.-"/>
@@ -260428,19 +260432,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01950g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02594g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01950g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02594g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01948g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02164g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01948g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02164g" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="FucTA"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00712" sboTerm="SBO:0000176" id="MAR00712" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00712" sboTerm="SBO:0000176" id="R_MAR00712" name="Isocitrate:NADP+ oxidoreductase (decarboxylating)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -260449,7 +260453,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00712">
+            <rdf:Description rdf:about="#R_MAR00712">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.42"/>
@@ -260463,19 +260467,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02183x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02183x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01306x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01596x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01306x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01596x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Idh"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03992" sboTerm="SBO:0000176" id="MAR03992" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03992" sboTerm="SBO:0000176" id="R_MAR03992" name="NADH:ferricytochrome-b5 oxidoreductase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -260484,7 +260488,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03992">
+            <rdf:Description rdf:about="#R_MAR03992">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.6.2.2"/>
@@ -260497,13 +260501,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01823c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02553c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01823c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02553c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01825c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01825c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -260513,7 +260517,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04252" sboTerm="SBO:0000176" id="MAR04252" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04252" sboTerm="SBO:0000176" id="R_MAR04252" name="nicotinate D-ribonucleotide phosphohydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -260522,7 +260526,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04252">
+            <rdf:Description rdf:about="#R_MAR04252">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.3.5"/>
@@ -260536,12 +260540,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02585c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02585c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02584c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02584c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -260549,7 +260553,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04253" sboTerm="SBO:0000176" id="MAR04253" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04253" sboTerm="SBO:0000176" id="R_MAR04253" name="ATP:beta-D-ribosylnicotinate 5-phosphotransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -260557,7 +260561,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04253">
+            <rdf:Description rdf:about="#R_MAR04253">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/NICRNS"/>
@@ -260570,19 +260574,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02584c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02584c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02585c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02585c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG12016"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04254" sboTerm="SBO:0000176" id="MAR04254" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04254" sboTerm="SBO:0000176" id="R_MAR04254" name="5-phospho-alpha-D-ribose 1-diphosphate:nicotinate ligase (ADP, diphosphate-forming)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -260591,7 +260595,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04254">
+            <rdf:Description rdf:about="#R_MAR04254">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.2.11"/>
@@ -260605,19 +260609,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02586c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02806c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02586c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02806c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02585c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02585c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Naprt"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04257" sboTerm="SBO:0000176" id="MAR04257" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04257" sboTerm="SBO:0000176" id="R_MAR04257" name="ATP:nicotinamide-nucleotide adenylyltransferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -260625,7 +260629,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04257">
+            <rdf:Description rdf:about="#R_MAR04257">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.7.1"/>
@@ -260640,19 +260644,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02585c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02585c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01646c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01646c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Nmnat"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04259" sboTerm="SBO:0000176" id="MAR04259" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04259" sboTerm="SBO:0000176" id="R_MAR04259" name="nicotinamide-D-ribonucleotide amidohydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -260661,7 +260665,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04259">
+            <rdf:Description rdf:about="#R_MAR04259">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.5.1.42"/>
@@ -260674,16 +260678,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02581c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02581c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02578c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02585c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02578c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02585c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR04260" sboTerm="SBO:0000176" id="MAR04260" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04260" sboTerm="SBO:0000176" id="R_MAR04260" name="Deamido-NAD+:L-glutamine amido-ligase (AMP-forming)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -260692,7 +260696,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04260">
+            <rdf:Description rdf:about="#R_MAR04260">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.3.5.1"/>
@@ -260708,23 +260712,23 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01646c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01975c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01646c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01975c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01334c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01974c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01974c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Nadsyn"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04261" sboTerm="SBO:0000176" id="MAR04261" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04261" sboTerm="SBO:0000176" id="R_MAR04261" name="deamido-NAD+:ammonia ligase (AMP-forming)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -260732,7 +260736,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04261">
+            <rdf:Description rdf:about="#R_MAR04261">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.3.5.1"/>
@@ -260745,20 +260749,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01646c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02578c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01646c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02578c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01334c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Nadsyn"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04264" sboTerm="SBO:0000176" id="MAR04264" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04264" sboTerm="SBO:0000176" id="R_MAR04264" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -260766,7 +260770,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04264">
+            <rdf:Description rdf:about="#R_MAR04264">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.3.5"/>
@@ -260777,12 +260781,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02581c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02581c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02582c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02582c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -260790,7 +260794,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04265" sboTerm="SBO:0000176" id="MAR04265" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04265" sboTerm="SBO:0000176" id="R_MAR04265" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -260798,7 +260802,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04265">
+            <rdf:Description rdf:about="#R_MAR04265">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.1.22"/>
@@ -260809,19 +260813,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02582c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02582c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02581c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02581c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG12016"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04267" sboTerm="SBO:0000176" id="MAR04267" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04267" sboTerm="SBO:0000176" id="R_MAR04267" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -260829,7 +260833,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04267">
+            <rdf:Description rdf:about="#R_MAR04267">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.7.1"/>
@@ -260840,19 +260844,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02581m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02581m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02552m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Nmnat"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04268" sboTerm="SBO:0000176" id="MAR04268" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04268" sboTerm="SBO:0000176" id="R_MAR04268" name="ATP:NAD+ 2&apos;-phosphotransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -260861,7 +260865,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04268">
+            <rdf:Description rdf:about="#R_MAR04268">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.1.23"/>
@@ -260876,13 +260880,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -260892,7 +260896,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04269" sboTerm="SBO:0000176" id="MAR04269" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04269" sboTerm="SBO:0000176" id="R_MAR04269" name="ATP:NAD+ 2&apos;-phosphotransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -260901,7 +260905,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04269">
+            <rdf:Description rdf:about="#R_MAR04269">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.1.23"/>
@@ -260917,13 +260921,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -260933,7 +260937,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04270" sboTerm="SBO:0000176" id="MAR04270" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04270" sboTerm="SBO:0000176" id="R_MAR04270" name="NADP+ 2&apos;-phosphohydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -260941,7 +260945,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04270">
+            <rdf:Description rdf:about="#R_MAR04270">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.3.2"/>
@@ -260955,15 +260959,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02552c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR04276" sboTerm="SBO:0000176" id="MAR04276" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04276" sboTerm="SBO:0000176" id="R_MAR04276" name="ATP:nicotinamide-nucleotide adenylyltransferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -260971,7 +260975,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04276">
+            <rdf:Description rdf:about="#R_MAR04276">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.7.1"/>
@@ -260985,19 +260989,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02585n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02585n" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01646n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01646n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759n" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Nmnat"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04278" sboTerm="SBO:0000176" id="MAR04278" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04278" sboTerm="SBO:0000176" id="R_MAR04278" name="deamido-NAD+:ammonia ligase (AMP-forming)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -261005,7 +261009,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04278">
+            <rdf:Description rdf:about="#R_MAR04278">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.3.5.1"/>
@@ -261018,20 +261022,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01646n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02578n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01646n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02578n" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01334n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759n" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Nadsyn"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04279" sboTerm="SBO:0000176" id="MAR04279" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04279" sboTerm="SBO:0000176" id="R_MAR04279" name="ATP:NAD+ 2&apos;-phosphotransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -261040,7 +261044,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04279">
+            <rdf:Description rdf:about="#R_MAR04279">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.1.23"/>
@@ -261055,13 +261059,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552n" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554n" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -261071,7 +261075,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04662" sboTerm="SBO:0000176" id="MAR04662" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04662" sboTerm="SBO:0000176" id="R_MAR04662" name="Nicotinate D-ribonucleoside:orthophosphate ribosyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -261080,7 +261084,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04662">
+            <rdf:Description rdf:about="#R_MAR04662">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.2.1"/>
@@ -261094,19 +261098,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02584c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02584c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02586c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02844c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02586c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02844c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG16758"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07623" sboTerm="SBO:0000176" id="MAR07623" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07623" sboTerm="SBO:0000176" id="R_MAR07623" name="NAD+:protein-L-arginine ADP-D-ribosyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -261114,7 +261118,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07623">
+            <rdf:Description rdf:about="#R_MAR07623">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.2.31"/>
@@ -261127,19 +261131,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00197c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00197c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00215c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02583c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00215c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02583c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Sirt6"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07625" sboTerm="SBO:0000176" id="MAR07625" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07625" sboTerm="SBO:0000176" id="R_MAR07625" name="NAD+:protein-L-arginine ADP-D-ribosyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -261147,7 +261151,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07625">
+            <rdf:Description rdf:about="#R_MAR07625">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.2.31"/>
@@ -261160,21 +261164,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00197c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00197c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00196c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02496c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02583c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00196c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02496c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02583c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Sirt6"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07677" sboTerm="SBO:0000176" id="MAR07677" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07677" sboTerm="SBO:0000176" id="R_MAR07677" name="Aldehyde:oxygen oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -261182,7 +261186,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07677">
+            <rdf:Description rdf:about="#R_MAR07677">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.2.3.1"/>
@@ -261195,20 +261199,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00536c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00536c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02041c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02506c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02506c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="ry"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07678" sboTerm="SBO:0000176" id="MAR07678" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07678" sboTerm="SBO:0000176" id="R_MAR07678" name="Aldehyde:oxygen oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -261216,7 +261220,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07678">
+            <rdf:Description rdf:about="#R_MAR07678">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.2.3.1"/>
@@ -261229,20 +261233,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00536c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00536c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02041c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02505c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02505c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="ry"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08790" sboTerm="SBO:0000176" id="MAR08790" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08790" sboTerm="SBO:0000176" id="R_MAR08790" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -261250,7 +261254,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08790">
+            <rdf:Description rdf:about="#R_MAR08790">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.7.1"/>
@@ -261263,19 +261267,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02581n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02581n" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02552n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759n" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Nmnat"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08791" sboTerm="SBO:0000176" id="MAR08791" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08791" sboTerm="SBO:0000176" id="R_MAR08791" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -261283,7 +261287,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08791">
+            <rdf:Description rdf:about="#R_MAR08791">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.2.1"/>
@@ -261296,19 +261300,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02583c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02844c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02583c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02844c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02582c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02582c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG16758"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03871" sboTerm="SBO:0000176" id="MAR03871" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03871" sboTerm="SBO:0000176" id="R_MAR03871" name="ATP:dephospho-CoA 3&apos;-phosphotransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -261317,7 +261321,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03871">
+            <rdf:Description rdf:about="#R_MAR03871">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.1.24"/>
@@ -261331,16 +261335,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01674c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01674c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR04058" sboTerm="SBO:0000176" id="MAR04058" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04058" sboTerm="SBO:0000176" id="R_MAR04058" name="ATP:dephospho-CoA 3&apos;-phosphotransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -261349,7 +261353,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04058">
+            <rdf:Description rdf:about="#R_MAR04058">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.1.24"/>
@@ -261362,16 +261366,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01674m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01674m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR04498" sboTerm="SBO:0000176" id="MAR04498" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04498" sboTerm="SBO:0000176" id="R_MAR04498" name="[Acyl-carrier-protein] 4&apos;-pantetheine-phosphohydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -261380,7 +261384,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04498">
+            <rdf:Description rdf:about="#R_MAR04498">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.4.14"/>
@@ -261394,16 +261398,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00184c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00184c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01349c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02741c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01349c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02741c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR04499" sboTerm="SBO:0000176" id="MAR04499" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04499" sboTerm="SBO:0000176" id="R_MAR04499" name="[Acyl-carrier-protein] 4&apos;-pantetheine-phosphohydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -261412,7 +261416,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04499">
+            <rdf:Description rdf:about="#R_MAR04499">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.4.14"/>
@@ -261425,16 +261429,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02485m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02741m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02485m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02741m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02484m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02484m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR04500" sboTerm="SBO:0000176" id="MAR04500" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04500" sboTerm="SBO:0000176" id="R_MAR04500" name="CoA:apo-[acyl-carrier-protein] pantetheinephosphotransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -261443,7 +261447,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04500">
+            <rdf:Description rdf:about="#R_MAR04500">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.8.-"/>
@@ -261457,19 +261461,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01349c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01349c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00184c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02681c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00184c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02681c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG32099"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04714" sboTerm="SBO:0000176" id="MAR04714" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04714" sboTerm="SBO:0000176" id="R_MAR04714" name="ATP:pantothenate 4&apos;-phosphotransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -261478,7 +261482,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04714">
+            <rdf:Description rdf:about="#R_MAR04714">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.1.33"/>
@@ -261492,13 +261496,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02679c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02679c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02741c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02741c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -261507,7 +261511,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04715" sboTerm="SBO:0000176" id="MAR04715" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04715" sboTerm="SBO:0000176" id="R_MAR04715" name="ATP:pantothenate 4&apos;-phosphotransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -261516,7 +261520,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04715">
+            <rdf:Description rdf:about="#R_MAR04715">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.1.33"/>
@@ -261530,13 +261534,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02679m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02679m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02741m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02741m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -261545,7 +261549,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04716" sboTerm="SBO:0000176" id="MAR04716" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04716" sboTerm="SBO:0000176" id="R_MAR04716" name="N-((R)-Pantothenoyl)-L-cysteine carboxy-lyase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -261554,7 +261558,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04716">
+            <rdf:Description rdf:about="#R_MAR04716">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.1.1.30"/>
@@ -261567,18 +261571,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02623c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02623c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01596c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02679c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01596c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02679c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG9547"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04717" sboTerm="SBO:0000176" id="MAR04717" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04717" sboTerm="SBO:0000176" id="R_MAR04717" name="(R)-pantetheine amidohydrolase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -261587,7 +261591,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04717">
+            <rdf:Description rdf:about="#R_MAR04717">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.5.1.92"/>
@@ -261601,15 +261605,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02679c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02679c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01627c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02680c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01627c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02680c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR04718" sboTerm="SBO:0000176" id="MAR04718" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04718" sboTerm="SBO:0000176" id="R_MAR04718" name="ATP:pantothenate 4&apos;-phosphotransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -261618,7 +261622,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04718">
+            <rdf:Description rdf:about="#R_MAR04718">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.1.33"/>
@@ -261632,13 +261636,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02680c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02680c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01636c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01636c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -261647,7 +261651,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04723" sboTerm="SBO:0000176" id="MAR04723" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04723" sboTerm="SBO:0000176" id="R_MAR04723" name="(R)-4&apos;-phosphopantothenate:L-cysteine ligase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -261656,7 +261660,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04723">
+            <rdf:Description rdf:about="#R_MAR04723">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.3.2.5"/>
@@ -261670,21 +261674,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01623c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01628c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01636c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01623c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01628c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01636c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00163c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01590c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00163c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01590c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Ppcs"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04725" sboTerm="SBO:0000176" id="MAR04725" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04725" sboTerm="SBO:0000176" id="R_MAR04725" name="N-[(R)-4&apos;-Phosphopantothenoyl]-L-cysteine carboxy-lyase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -261693,7 +261697,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04725">
+            <rdf:Description rdf:about="#R_MAR04725">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.1.1.36"/>
@@ -261709,18 +261713,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00163c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00163c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01596c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02741c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01596c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02741c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Ppcdc"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04727" sboTerm="SBO:0000176" id="MAR04727" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04727" sboTerm="SBO:0000176" id="R_MAR04727" name="ATP:pantetheine-4&apos;-phosphate adenylyltransferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -261729,7 +261733,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04727">
+            <rdf:Description rdf:about="#R_MAR04727">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.7.3"/>
@@ -261743,16 +261747,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02741c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02741c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01674c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01674c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR04730" sboTerm="SBO:0000176" id="MAR04730" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04730" sboTerm="SBO:0000176" id="R_MAR04730" name="ATP:pantothenate 4&apos;-phosphotransferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -261761,7 +261765,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04730">
+            <rdf:Description rdf:about="#R_MAR04730">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.1.33"/>
@@ -261774,13 +261778,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00163c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00163c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02623c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02623c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -261789,7 +261793,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04731" sboTerm="SBO:0000176" id="MAR04731" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04731" sboTerm="SBO:0000176" id="R_MAR04731" name="ATP:pantothenate 4&apos;-phosphotransferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -261798,7 +261802,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04731">
+            <rdf:Description rdf:about="#R_MAR04731">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.1.33"/>
@@ -261811,13 +261815,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00163m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01285m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00163m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01371m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02623m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02623m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -261826,7 +261830,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04733" sboTerm="SBO:0000176" id="MAR04733" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04733" sboTerm="SBO:0000176" id="R_MAR04733" name="N-[(R)-4&apos;-Phosphopantothenoyl]-L-cysteine carboxy-lyase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -261835,7 +261839,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04733">
+            <rdf:Description rdf:about="#R_MAR04733">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.1.1.36"/>
@@ -261850,18 +261854,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00163m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00163m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01596m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02741m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01596m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02741m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Ppcdc"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04734" sboTerm="SBO:0000176" id="MAR04734" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04734" sboTerm="SBO:0000176" id="R_MAR04734" name="ATP:pantetheine-4&apos;-phosphate adenylyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -261870,7 +261874,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04734">
+            <rdf:Description rdf:about="#R_MAR04734">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.7.3"/>
@@ -261883,16 +261887,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02741m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02741m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01674m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01674m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07731" sboTerm="SBO:0000176" id="MAR07731" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07731" sboTerm="SBO:0000176" id="R_MAR07731" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -261900,7 +261904,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07731">
+            <rdf:Description rdf:about="#R_MAR07731">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.3.2"/>
@@ -261913,15 +261917,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01674l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01674l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751l" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08792" sboTerm="SBO:0000176" id="MAR08792" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08792" sboTerm="SBO:0000176" id="R_MAR08792" name="pantetheine-4&apos;-phosphate phosphohydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -261929,7 +261933,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08792">
+            <rdf:Description rdf:about="#R_MAR08792">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PAN4PP"/>
@@ -261942,15 +261946,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02741c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02741c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02679c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02679c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR00663" sboTerm="SBO:0000176" id="MAR00663" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00663" sboTerm="SBO:0000176" id="R_MAR00663" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -261959,7 +261963,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00663">
+            <rdf:Description rdf:about="#R_MAR00663">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.4.11"/>
@@ -261973,13 +261977,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02750c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02750c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00237c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02173c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00237c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02173c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -261990,7 +261994,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04308" sboTerm="SBO:0000176" id="MAR04308" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04308" sboTerm="SBO:0000176" id="R_MAR04308" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -261999,7 +262003,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04308">
+            <rdf:Description rdf:about="#R_MAR04308">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/5.5.1.4"/>
@@ -262013,16 +262017,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02173c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02173c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01968c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01968c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Inos"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06539" sboTerm="SBO:0000176" id="MAR06539" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06539" sboTerm="SBO:0000176" id="R_MAR06539" name="myo-Inositol:oxygen oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -262031,7 +262035,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06539">
+            <rdf:Description rdf:about="#R_MAR06539">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.13.99.1"/>
@@ -262047,19 +262051,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02171c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02171c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01973c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01973c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG6910"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06540" sboTerm="SBO:0000176" id="MAR06540" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06540" sboTerm="SBO:0000176" id="R_MAR06540" name="1D-myo-inositol 1-phosphate phosphohydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -262068,7 +262072,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06540">
+            <rdf:Description rdf:about="#R_MAR06540">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.3.25"/>
@@ -262082,12 +262086,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02173c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02173c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02171c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02171c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -262096,7 +262100,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06542" sboTerm="SBO:0000176" id="MAR06542" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06542" sboTerm="SBO:0000176" id="R_MAR06542" name="ATP:1-phosphatidyl-1D-myo-inositol 3-phosphotransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -262104,7 +262108,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06542">
+            <rdf:Description rdf:about="#R_MAR06542">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.1.137"/>
@@ -262116,19 +262120,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02750c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02750c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00552c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00552c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Pi3K59F"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06543" sboTerm="SBO:0000176" id="MAR06543" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06543" sboTerm="SBO:0000176" id="R_MAR06543" name="1-Phosphatidyl-1D-myo-inositol 3-phosphate 3-phosphohydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -262137,7 +262141,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06543">
+            <rdf:Description rdf:about="#R_MAR06543">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.3.64"/>
@@ -262150,12 +262154,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00552c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00552c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02750c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02750c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -262164,7 +262168,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06544" sboTerm="SBO:0000176" id="MAR06544" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06544" sboTerm="SBO:0000176" id="R_MAR06544" name="ATP:1-phosphatidyl-1D-myo-inositol-3-phosphate 5-phosphotransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -262173,7 +262177,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06544">
+            <rdf:Description rdf:about="#R_MAR06544">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.1.150"/>
@@ -262185,19 +262189,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00552c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00552c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="fab1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06545" sboTerm="SBO:0000176" id="MAR06545" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06545" sboTerm="SBO:0000176" id="R_MAR06545" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -262205,7 +262209,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06545">
+            <rdf:Description rdf:about="#R_MAR06545">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.3.-"/>
@@ -262216,12 +262220,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00552c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00552c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -262241,7 +262245,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06546" sboTerm="SBO:0000176" id="MAR06546" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06546" sboTerm="SBO:0000176" id="R_MAR06546" name="ATP:1-Phosphatidyl-1D-myo-inositol 4-phosphotransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -262250,7 +262254,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06546">
+            <rdf:Description rdf:about="#R_MAR06546">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.1.67"/>
@@ -262264,16 +262268,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02750c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02750c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00553c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00553c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR06547" sboTerm="SBO:0000176" id="MAR06547" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06547" sboTerm="SBO:0000176" id="R_MAR06547" name="ATP:1-Phosphatidyl-1D-myo-inositol 4-phosphotransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -262282,7 +262286,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06547">
+            <rdf:Description rdf:about="#R_MAR06547">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.3.-"/>
@@ -262296,12 +262300,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00553c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00553c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02750c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02750c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -262321,7 +262325,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06548" sboTerm="SBO:0000176" id="MAR06548" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06548" sboTerm="SBO:0000176" id="R_MAR06548" name="ATP:1-phosphatidyl-1D-myo-inositol-4-phosphate 3-phosphotransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -262329,7 +262333,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06548">
+            <rdf:Description rdf:about="#R_MAR06548">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.1.154"/>
@@ -262342,19 +262346,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00553c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00553c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00551c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00551c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Pi3K68D"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06549" sboTerm="SBO:0000176" id="MAR06549" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06549" sboTerm="SBO:0000176" id="R_MAR06549" name="1-phosphatidyl-1D-myo-inositol-3,4-bisphosphate 4-phosphohydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -262362,7 +262366,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06549">
+            <rdf:Description rdf:about="#R_MAR06549">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.3.66"/>
@@ -262375,18 +262379,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00551c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00551c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00552c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00552c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG42271"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06550" sboTerm="SBO:0000176" id="MAR06550" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06550" sboTerm="SBO:0000176" id="R_MAR06550" name="1-Phosphatidyl-1D-myo-inositol 3,4-bisphosphate 3-phosphohydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -262394,7 +262398,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06550">
+            <rdf:Description rdf:about="#R_MAR06550">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.3.67"/>
@@ -262406,18 +262410,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00551c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00551c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00553c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00553c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Pten"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06551" sboTerm="SBO:0000176" id="MAR06551" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06551" sboTerm="SBO:0000176" id="R_MAR06551" name="ATP:1-phosphatidyl-1D-myo-inositol-4-phosphate 5-phosphotransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -262425,7 +262429,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06551">
+            <rdf:Description rdf:about="#R_MAR06551">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.1.68"/>
@@ -262438,19 +262442,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00553c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00553c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02736c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02736c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="PIP5K59B"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06552" sboTerm="SBO:0000176" id="MAR06552" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06552" sboTerm="SBO:0000176" id="R_MAR06552" name="Phosphatidyl-myo-inositol-4,5-bisphosphate 4-phosphohydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -262458,7 +262462,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06552">
+            <rdf:Description rdf:about="#R_MAR06552">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.3.36"/>
@@ -262471,12 +262475,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02736c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02736c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00553c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00553c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -262486,7 +262490,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06553" sboTerm="SBO:0000176" id="MAR06553" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06553" sboTerm="SBO:0000176" id="R_MAR06553" name="1-phosphatidyl-1D-myo-inositol-4,5-bisphosphate 4-phosphohydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -262494,7 +262498,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06553">
+            <rdf:Description rdf:about="#R_MAR06553">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.3.78"/>
@@ -262506,18 +262510,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02736c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02736c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00554c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG6707"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06554" sboTerm="SBO:0000176" id="MAR06554" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06554" sboTerm="SBO:0000176" id="R_MAR06554" name="ATP:1-phosphatidyl-1D-myo-inositol-5-phosphate 4-phosphotransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -262526,7 +262530,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06554">
+            <rdf:Description rdf:about="#R_MAR06554">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.1.149"/>
@@ -262539,19 +262543,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00554c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02736c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02736c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="PIP4K"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06555" sboTerm="SBO:0000176" id="MAR06555" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06555" sboTerm="SBO:0000176" id="R_MAR06555" name="ATP:1-phosphatidyl-1D-myo-inositol-4,5-bisphosphate 3-phosphotransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -262559,7 +262563,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06555">
+            <rdf:Description rdf:about="#R_MAR06555">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.1.153"/>
@@ -262572,13 +262576,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02736c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02736c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02734c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02734c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -262587,7 +262591,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06556" sboTerm="SBO:0000176" id="MAR06556" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06556" sboTerm="SBO:0000176" id="R_MAR06556" name="Phosphatidylinositol-3,4,5-trisphosphate 3-phosphohydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -262595,7 +262599,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06556">
+            <rdf:Description rdf:about="#R_MAR06556">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.3.67"/>
@@ -262608,18 +262612,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02734c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02734c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02736c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02736c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Pten"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06557" sboTerm="SBO:0000176" id="MAR06557" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06557" sboTerm="SBO:0000176" id="R_MAR06557" name="1-phosphatidyl-1D-myo-inositol-3,4,5-trisphosphate 5-phosphohydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -262628,7 +262632,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06557">
+            <rdf:Description rdf:about="#R_MAR06557">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.3.-"/>
@@ -262640,12 +262644,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02734c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02734c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00551c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00551c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -262665,7 +262669,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06558" sboTerm="SBO:0000176" id="MAR06558" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06558" sboTerm="SBO:0000176" id="R_MAR06558" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -262674,7 +262678,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06558">
+            <rdf:Description rdf:about="#R_MAR06558">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.3.67"/>
@@ -262686,18 +262690,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02734c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02734c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02735c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02735c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Pten"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06559" sboTerm="SBO:0000176" id="MAR06559" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06559" sboTerm="SBO:0000176" id="R_MAR06559" name="1-Phosphatidyl-1D-myo-inositol-4,5-bisphosphate inositoltrisphosphohydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -262705,7 +262709,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06559">
+            <rdf:Description rdf:about="#R_MAR06559">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.4.11"/>
@@ -262718,13 +262722,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02736c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02736c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00237c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01718c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00237c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01718c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -262735,7 +262739,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06560" sboTerm="SBO:0000176" id="MAR06560" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06560" sboTerm="SBO:0000176" id="R_MAR06560" name="D-myo-Inositol-1,4,5-trisphosphate 5-phosphohydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -262743,7 +262747,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06560">
+            <rdf:Description rdf:about="#R_MAR06560">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.3.56"/>
@@ -262756,15 +262760,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01718c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01718c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00526c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00526c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR06561" sboTerm="SBO:0000176" id="MAR06561" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06561" sboTerm="SBO:0000176" id="R_MAR06561" name="D-myo-Inositol-1,4-bisphosphate 1-phosphohydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -262772,7 +262776,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06561">
+            <rdf:Description rdf:about="#R_MAR06561">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.3.57"/>
@@ -262785,18 +262789,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00526c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00526c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00530c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00530c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Ipp"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06562" sboTerm="SBO:0000176" id="MAR06562" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06562" sboTerm="SBO:0000176" id="R_MAR06562" name="1D-myo-inositol 4-phosphate phosphohydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -262804,7 +262808,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06562">
+            <rdf:Description rdf:about="#R_MAR06562">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.3.25"/>
@@ -262817,12 +262821,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00530c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00530c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02171c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02171c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -262831,7 +262835,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06563" sboTerm="SBO:0000176" id="MAR06563" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06563" sboTerm="SBO:0000176" id="R_MAR06563" name="ATP:1D-myo-inositol-1,4,5-trisphosphate 3-phosphotransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -262839,7 +262843,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06563">
+            <rdf:Description rdf:about="#R_MAR06563">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.1.127"/>
@@ -262852,19 +262856,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01718c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01718c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00522c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00522c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="IP3K2"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06564" sboTerm="SBO:0000176" id="MAR06564" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06564" sboTerm="SBO:0000176" id="R_MAR06564" name="D-myo-Inositol 1,3,4,5-tetrakisphosphate 3-phosphohydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -262872,7 +262876,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06564">
+            <rdf:Description rdf:about="#R_MAR06564">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.3.62"/>
@@ -262885,12 +262889,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00522c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00522c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01718c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01718c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -262899,7 +262903,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06565" sboTerm="SBO:0000176" id="MAR06565" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06565" sboTerm="SBO:0000176" id="R_MAR06565" name="D-myo-Inositol 1,3,4,5-tetrakisphosphate 5-phosphohydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -262907,7 +262911,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06565">
+            <rdf:Description rdf:about="#R_MAR06565">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.3.56"/>
@@ -262921,15 +262925,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00522c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00522c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00524c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00524c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR06568" sboTerm="SBO:0000176" id="MAR06568" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06568" sboTerm="SBO:0000176" id="R_MAR06568" name="ATP:1D-myo-inositol-1,3,4,6-tetrakisphosphate 5-phosphotransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -262937,7 +262941,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06568">
+            <rdf:Description rdf:about="#R_MAR06568">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.1.140"/>
@@ -262950,19 +262954,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00523c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00523c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00521c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00521c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Ipk2"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06569" sboTerm="SBO:0000176" id="MAR06569" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06569" sboTerm="SBO:0000176" id="R_MAR06569" name="D-myo-Inositol 1,3,4-trisphosphate 1-phosphohydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -262970,7 +262974,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06569">
+            <rdf:Description rdf:about="#R_MAR06569">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.3.57"/>
@@ -262983,18 +262987,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00524c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00524c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00528c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00528c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Ipp"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06570" sboTerm="SBO:0000176" id="MAR06570" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06570" sboTerm="SBO:0000176" id="R_MAR06570" name="D-myo-Inositol-3,4-bisphosphate 4-phosphohydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -263002,7 +263006,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06570">
+            <rdf:Description rdf:about="#R_MAR06570">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.3.66"/>
@@ -263015,18 +263019,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00528c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00528c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00529c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00529c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG42271"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06571" sboTerm="SBO:0000176" id="MAR06571" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06571" sboTerm="SBO:0000176" id="R_MAR06571" name="1D-myo-inositol 3-phosphate phosphohydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -263034,7 +263038,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06571">
+            <rdf:Description rdf:about="#R_MAR06571">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.3.25"/>
@@ -263047,12 +263051,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00529c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00529c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02171c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02171c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -263061,7 +263065,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06572" sboTerm="SBO:0000176" id="MAR06572" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06572" sboTerm="SBO:0000176" id="R_MAR06572" name="1D-myo-inositol-3-phosphate lyase (isomerizing)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -263069,7 +263073,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06572">
+            <rdf:Description rdf:about="#R_MAR06572">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/5.5.1.4"/>
@@ -263082,16 +263086,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01968c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01968c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00529c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00529c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Inos"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06573" sboTerm="SBO:0000176" id="MAR06573" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06573" sboTerm="SBO:0000176" id="R_MAR06573" name="ATP:1D-myo-inositol-1,4,5-trisphosphate 6-phosphotransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -263099,7 +263103,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06573">
+            <rdf:Description rdf:about="#R_MAR06573">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.1.151"/>
@@ -263112,19 +263116,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01718c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01718c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00525c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00525c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Ipk2"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06574" sboTerm="SBO:0000176" id="MAR06574" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06574" sboTerm="SBO:0000176" id="R_MAR06574" name="ATP:1D-myo-inositol-1,4,5,6-tetrakisphosphate 3-phosphotransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -263132,7 +263136,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06574">
+            <rdf:Description rdf:about="#R_MAR06574">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.1.151"/>
@@ -263145,19 +263149,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00525c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00525c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00521c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00521c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Ipk2"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06576" sboTerm="SBO:0000176" id="MAR06576" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06576" sboTerm="SBO:0000176" id="R_MAR06576" name="ATP:1D-myo-inositol 1,3,4,5,6-pentakisphosphate 2-phosphotransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -263165,7 +263169,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06576">
+            <rdf:Description rdf:about="#R_MAR06576">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.1.158"/>
@@ -263178,19 +263182,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00521c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00521c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02492c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02492c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Ipk1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06579" sboTerm="SBO:0000176" id="MAR06579" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06579" sboTerm="SBO:0000176" id="R_MAR06579" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -263199,7 +263203,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06579">
+            <rdf:Description rdf:about="#R_MAR06579">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.1.68"/>
@@ -263210,19 +263214,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02750c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02750c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00554c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="PIP5K59B"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06580" sboTerm="SBO:0000176" id="MAR06580" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06580" sboTerm="SBO:0000176" id="R_MAR06580" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -263231,7 +263235,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06580">
+            <rdf:Description rdf:about="#R_MAR06580">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.1.68"/>
@@ -263244,19 +263248,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02750g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02750g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00554g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01285g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00554g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039g" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="PIP5K59B"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06581" sboTerm="SBO:0000176" id="MAR06581" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06581" sboTerm="SBO:0000176" id="R_MAR06581" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -263265,7 +263269,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06581">
+            <rdf:Description rdf:about="#R_MAR06581">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.1.68"/>
@@ -263277,19 +263281,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02750r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02750r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00554r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01285r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00554r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="PIP5K59B"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06583" sboTerm="SBO:0000176" id="MAR06583" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06583" sboTerm="SBO:0000176" id="R_MAR06583" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -263298,7 +263302,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06583">
+            <rdf:Description rdf:about="#R_MAR06583">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.3.67"/>
@@ -263309,18 +263313,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00554c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02750c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02750c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Pten"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06584" sboTerm="SBO:0000176" id="MAR06584" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06584" sboTerm="SBO:0000176" id="R_MAR06584" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -263329,7 +263333,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06584">
+            <rdf:Description rdf:about="#R_MAR06584">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.3.67"/>
@@ -263340,18 +263344,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00554g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00554g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02750g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02750g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751g" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Pten"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06585" sboTerm="SBO:0000176" id="MAR06585" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06585" sboTerm="SBO:0000176" id="R_MAR06585" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -263360,7 +263364,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06585">
+            <rdf:Description rdf:about="#R_MAR06585">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.3.67"/>
@@ -263372,18 +263376,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00554r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00554r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02750r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02750r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Pten"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06587" sboTerm="SBO:0000176" id="MAR06587" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06587" sboTerm="SBO:0000176" id="R_MAR06587" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -263392,7 +263396,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06587">
+            <rdf:Description rdf:about="#R_MAR06587">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.1.137"/>
@@ -263402,19 +263406,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00554c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Pi3K59F"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06588" sboTerm="SBO:0000176" id="MAR06588" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06588" sboTerm="SBO:0000176" id="R_MAR06588" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -263423,7 +263427,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06588">
+            <rdf:Description rdf:about="#R_MAR06588">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.1.137"/>
@@ -263436,19 +263440,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00554g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00554g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00555g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01285g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00555g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039g" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Pi3K59F"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06589" sboTerm="SBO:0000176" id="MAR06589" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06589" sboTerm="SBO:0000176" id="R_MAR06589" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -263457,7 +263461,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06589">
+            <rdf:Description rdf:about="#R_MAR06589">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.1.137"/>
@@ -263468,19 +263472,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00554r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00554r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00555r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01285r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00555r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Pi3K59F"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06591" sboTerm="SBO:0000176" id="MAR06591" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06591" sboTerm="SBO:0000176" id="R_MAR06591" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -263489,7 +263493,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06591">
+            <rdf:Description rdf:about="#R_MAR06591">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.3.-"/>
@@ -263501,12 +263505,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02735c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02735c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00554c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -263526,7 +263530,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06592" sboTerm="SBO:0000176" id="MAR06592" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06592" sboTerm="SBO:0000176" id="R_MAR06592" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -263535,7 +263539,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06592">
+            <rdf:Description rdf:about="#R_MAR06592">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.1.68"/>
@@ -263546,19 +263550,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00551c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00551c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02734c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02734c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="PIP5K59B"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06595" sboTerm="SBO:0000176" id="MAR06595" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06595" sboTerm="SBO:0000176" id="R_MAR06595" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -263567,7 +263571,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06595">
+            <rdf:Description rdf:about="#R_MAR06595">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.1.68"/>
@@ -263578,19 +263582,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02735c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02735c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02734c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02734c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="PIP5K59B"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07652" sboTerm="SBO:0000176" id="MAR07652" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07652" sboTerm="SBO:0000176" id="R_MAR07652" name="ATP:1D-myo-inositol-hexakisphosphate 5-phosphotransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -263598,7 +263602,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07652">
+            <rdf:Description rdf:about="#R_MAR07652">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.4.21"/>
@@ -263611,12 +263615,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02492c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02492c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01133c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01133c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -263625,7 +263629,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07654" sboTerm="SBO:0000176" id="MAR07654" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07654" sboTerm="SBO:0000176" id="R_MAR07654" name="5-Diphosphoinositol pentakisphosphate diphosphohydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -263633,7 +263637,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07654">
+            <rdf:Description rdf:about="#R_MAR07654">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.4.21"/>
@@ -263647,13 +263651,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01133n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01133n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040n" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02492n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02492n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751n" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -263662,7 +263666,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07655" sboTerm="SBO:0000176" id="MAR07655" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07655" sboTerm="SBO:0000176" id="R_MAR07655" name="5-Diphosphoinositol pentakisphosphate diphosphohydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -263670,7 +263674,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07655">
+            <rdf:Description rdf:about="#R_MAR07655">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.6.1.52"/>
@@ -263684,19 +263688,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01133c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01133c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02492c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02492c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Aps"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07656" sboTerm="SBO:0000176" id="MAR07656" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07656" sboTerm="SBO:0000176" id="R_MAR07656" name="ATP:1D-myo-inositol-5-diphosphate-pentakisphosphate phosphotransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -263704,7 +263708,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07656">
+            <rdf:Description rdf:about="#R_MAR07656">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.4.24"/>
@@ -263717,18 +263721,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01133c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01133c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00531c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00531c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="l1G0196"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08799" sboTerm="SBO:0000176" id="MAR08799" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08799" sboTerm="SBO:0000176" id="R_MAR08799" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -263736,7 +263740,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08799">
+            <rdf:Description rdf:about="#R_MAR08799">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.1.151"/>
@@ -263749,19 +263753,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00522n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00522n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371n" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00521n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01285n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00521n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039n" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Ipk2"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08800" sboTerm="SBO:0000176" id="MAR08800" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08800" sboTerm="SBO:0000176" id="R_MAR08800" name="ATP:1D-myo-inositol-1,3,4,6-tetrakisphosphate 5-phosphotransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -263769,7 +263773,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08800">
+            <rdf:Description rdf:about="#R_MAR08800">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.1.151"/>
@@ -263783,19 +263787,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00523n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00523n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371n" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00521n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01285n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00521n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039n" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Ipk2"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08801" sboTerm="SBO:0000176" id="MAR08801" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08801" sboTerm="SBO:0000176" id="R_MAR08801" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -263803,7 +263807,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08801">
+            <rdf:Description rdf:about="#R_MAR08801">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/MI134P4P"/>
@@ -263815,15 +263819,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00524c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00524c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02172c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02172c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08802" sboTerm="SBO:0000176" id="MAR08802" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08802" sboTerm="SBO:0000176" id="R_MAR08802" name="D-myo-Inositol-1,3-bisphosphate 3-phosphohydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -263831,7 +263835,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08802">
+            <rdf:Description rdf:about="#R_MAR08802">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/MI13PP"/>
@@ -263844,18 +263848,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02172c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02172c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02173c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02173c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="mtm"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08803" sboTerm="SBO:0000176" id="MAR08803" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08803" sboTerm="SBO:0000176" id="R_MAR08803" name="ATP:1D-myo-inositol-1,4,5,6-tetrakisphosphate 3-phosphotransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -263863,7 +263867,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08803">
+            <rdf:Description rdf:about="#R_MAR08803">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.1.151"/>
@@ -263877,19 +263881,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00525n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00525n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371n" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00521n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01285n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00521n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039n" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Ipk2"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08804" sboTerm="SBO:0000176" id="MAR08804" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08804" sboTerm="SBO:0000176" id="R_MAR08804" name="ATP:1D-myo-inositol-1,4,5-trisphosphate 6-phosphotransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -263897,7 +263901,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08804">
+            <rdf:Description rdf:about="#R_MAR08804">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.1.151"/>
@@ -263911,19 +263915,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01718n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01718n" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00525n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01285n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00525n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039n" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Ipk2"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08805" sboTerm="SBO:0000176" id="MAR08805" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08805" sboTerm="SBO:0000176" id="R_MAR08805" name="ATP:1D-myo-inositol-1,4,5-trisphosphate 3-phosphotransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -263931,7 +263935,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08805">
+            <rdf:Description rdf:about="#R_MAR08805">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.1.151"/>
@@ -263945,19 +263949,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01718n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01718n" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00522n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01285n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00522n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039n" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Ipk2"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08806" sboTerm="SBO:0000176" id="MAR08806" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08806" sboTerm="SBO:0000176" id="R_MAR08806" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -263965,7 +263969,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08806">
+            <rdf:Description rdf:about="#R_MAR08806">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/MI14P4P"/>
@@ -263977,15 +263981,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00526c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00526c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02173c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02173c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08807" sboTerm="SBO:0000176" id="MAR08807" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08807" sboTerm="SBO:0000176" id="R_MAR08807" name="Phosphatidylinositol-3,4,5-trisphosphate 3-phosphohydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -263993,7 +263997,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08807">
+            <rdf:Description rdf:about="#R_MAR08807">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.3.67"/>
@@ -264007,18 +264011,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02734n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02734n" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02736n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02736n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751n" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Pten"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08809" sboTerm="SBO:0000176" id="MAR08809" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08809" sboTerm="SBO:0000176" id="R_MAR08809" name="1-Phosphatidyl-1D-myo-inositol 3,4-bisphosphate 3-phosphohydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -264026,7 +264030,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08809">
+            <rdf:Description rdf:about="#R_MAR08809">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PI34P3Pn"/>
@@ -264039,18 +264043,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00551n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00551n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040n" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00553n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00553n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751n" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="mtm"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08810" sboTerm="SBO:0000176" id="MAR08810" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08810" sboTerm="SBO:0000176" id="R_MAR08810" name="1-phosphatidyl-1D-myo-inositol-3,4-bisphosphate 4-phosphohydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -264058,7 +264062,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08810">
+            <rdf:Description rdf:about="#R_MAR08810">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PI34P4Pn"/>
@@ -264071,18 +264075,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00551n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00551n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040n" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00552n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00552n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751n" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG42271"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08811" sboTerm="SBO:0000176" id="MAR08811" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08811" sboTerm="SBO:0000176" id="R_MAR08811" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -264090,7 +264094,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08811">
+            <rdf:Description rdf:about="#R_MAR08811">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PI34P5Kn"/>
@@ -264102,19 +264106,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00551n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00551n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371n" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02734n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02734n" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="PIP5K59B"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08812" sboTerm="SBO:0000176" id="MAR08812" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08812" sboTerm="SBO:0000176" id="R_MAR08812" name="1-Phosphatidyl-1D-myo-inositol 3-phosphate 3-phosphohydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -264122,7 +264126,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08812">
+            <rdf:Description rdf:about="#R_MAR08812">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PI3P3Pn"/>
@@ -264135,18 +264139,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00552n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00552n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040n" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02750n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02750n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751n" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="mtm"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08813" sboTerm="SBO:0000176" id="MAR08813" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08813" sboTerm="SBO:0000176" id="R_MAR08813" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -264154,7 +264158,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08813">
+            <rdf:Description rdf:about="#R_MAR08813">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.1.68"/>
@@ -264167,19 +264171,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00552c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00552c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00551c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00551c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="PIP5K59B"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08814" sboTerm="SBO:0000176" id="MAR08814" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08814" sboTerm="SBO:0000176" id="R_MAR08814" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -264187,7 +264191,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08814">
+            <rdf:Description rdf:about="#R_MAR08814">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PI3P4Kn"/>
@@ -264199,19 +264203,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00552n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00552n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371n" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00551n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01285n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00551n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039n" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="PIP5K59B"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08815" sboTerm="SBO:0000176" id="MAR08815" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08815" sboTerm="SBO:0000176" id="R_MAR08815" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -264219,7 +264223,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08815">
+            <rdf:Description rdf:about="#R_MAR08815">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.1.68"/>
@@ -264232,19 +264236,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00552c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00552c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02735c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02735c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="PIP5K59B"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08816" sboTerm="SBO:0000176" id="MAR08816" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08816" sboTerm="SBO:0000176" id="R_MAR08816" name="ATP:1-phosphatidyl-1D-myo-inositol-4,5-bisphosphate 3-phosphotransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -264252,7 +264256,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08816">
+            <rdf:Description rdf:about="#R_MAR08816">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PI45P3Kn"/>
@@ -264265,19 +264269,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02736n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02736n" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02734n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02734n" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Pi3K92E"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08817" sboTerm="SBO:0000176" id="MAR08817" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08817" sboTerm="SBO:0000176" id="R_MAR08817" name="Phosphatidyl-myo-inositol-4,5-bisphosphate 4-phosphohydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -264285,7 +264289,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08817">
+            <rdf:Description rdf:about="#R_MAR08817">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PI45P5Pn"/>
@@ -264298,12 +264302,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02736n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02736n" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00553n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00553n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751n" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -264313,7 +264317,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08818" sboTerm="SBO:0000176" id="MAR08818" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08818" sboTerm="SBO:0000176" id="R_MAR08818" name="1-Phosphatidyl-1D-myo-inositol-4,5-bisphosphate inositoltrisphosphohydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -264321,7 +264325,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08818">
+            <rdf:Description rdf:about="#R_MAR08818">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.4.11"/>
@@ -264335,13 +264339,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02736n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02736n" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01718n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00237n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01718n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00237n" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -264351,7 +264355,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08819" sboTerm="SBO:0000176" id="MAR08819" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08819" sboTerm="SBO:0000176" id="R_MAR08819" name="ATP:1-phosphatidyl-1D-myo-inositol-4-phosphate 3-phosphotransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -264359,7 +264363,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08819">
+            <rdf:Description rdf:about="#R_MAR08819">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PI4P3Kn"/>
@@ -264372,19 +264376,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00553n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00553n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371n" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00551n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01285n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00551n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039n" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Pi3K68D"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08820" sboTerm="SBO:0000176" id="MAR08820" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08820" sboTerm="SBO:0000176" id="R_MAR08820" name="ATP:1-Phosphatidyl-1D-myo-inositol 4-phosphotransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -264392,7 +264396,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08820">
+            <rdf:Description rdf:about="#R_MAR08820">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PI4P4Pn"/>
@@ -264405,15 +264409,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00553n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00553n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040n" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02750n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02750n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751n" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08821" sboTerm="SBO:0000176" id="MAR08821" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08821" sboTerm="SBO:0000176" id="R_MAR08821" name="ATP:1-phosphatidyl-1D-myo-inositol-4-phosphate 5-phosphotransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -264421,7 +264425,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08821">
+            <rdf:Description rdf:about="#R_MAR08821">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PI4P5Kn"/>
@@ -264434,19 +264438,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00553n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00553n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371n" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02736n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02736n" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="PIP5K59B"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08822" sboTerm="SBO:0000176" id="MAR08822" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08822" sboTerm="SBO:0000176" id="R_MAR08822" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -264454,7 +264458,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08822">
+            <rdf:Description rdf:about="#R_MAR08822">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.4.11"/>
@@ -264467,13 +264471,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00553c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00553c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00237c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00526c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00237c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00526c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -264484,7 +264488,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08823" sboTerm="SBO:0000176" id="MAR08823" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08823" sboTerm="SBO:0000176" id="R_MAR08823" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -264492,7 +264496,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08823">
+            <rdf:Description rdf:about="#R_MAR08823">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.4.11"/>
@@ -264505,19 +264509,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00553n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00553n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040n" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00526n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00237n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00526n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00237n" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Plc21C"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08824" sboTerm="SBO:0000176" id="MAR08824" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08824" sboTerm="SBO:0000176" id="R_MAR08824" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -264525,7 +264529,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08824">
+            <rdf:Description rdf:about="#R_MAR08824">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.1.137"/>
@@ -264538,19 +264542,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00554c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02735c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02735c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Pi3K59F"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08825" sboTerm="SBO:0000176" id="MAR08825" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08825" sboTerm="SBO:0000176" id="R_MAR08825" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -264558,7 +264562,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08825">
+            <rdf:Description rdf:about="#R_MAR08825">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.1.154"/>
@@ -264571,19 +264575,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00554r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00554r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02735r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02735r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Pi3K68D"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08826" sboTerm="SBO:0000176" id="MAR08826" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08826" sboTerm="SBO:0000176" id="R_MAR08826" name="ATP:1-phosphatidyl-1D-myo-inositol-5-phosphate 4-phosphotransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -264591,7 +264595,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08826">
+            <rdf:Description rdf:about="#R_MAR08826">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PI5P4Kn"/>
@@ -264604,19 +264608,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00554n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00554n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371n" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02736n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02736n" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="PIP4K"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08827" sboTerm="SBO:0000176" id="MAR08827" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08827" sboTerm="SBO:0000176" id="R_MAR08827" name="ATP:1-phosphatidyl-1D-myo-inositol 3-phosphotransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -264624,7 +264628,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08827">
+            <rdf:Description rdf:about="#R_MAR08827">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.1.154"/>
@@ -264638,19 +264642,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02750r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02750r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00552r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01285r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00552r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Pi3K68D"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08829" sboTerm="SBO:0000176" id="MAR08829" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08829" sboTerm="SBO:0000176" id="R_MAR08829" name="ATP:1-phosphatidyl-1D-myo-inositol 3-phosphotransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -264658,7 +264662,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08829">
+            <rdf:Description rdf:about="#R_MAR08829">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PIK3n"/>
@@ -264671,19 +264675,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02750n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02750n" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00552n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01285n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00552n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039n" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Pi3K59F"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08830" sboTerm="SBO:0000176" id="MAR08830" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08830" sboTerm="SBO:0000176" id="R_MAR08830" name="ATP:1-Phosphatidyl-1D-myo-inositol 4-phosphotransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -264691,7 +264695,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08830">
+            <rdf:Description rdf:about="#R_MAR08830">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PIK4n"/>
@@ -264704,16 +264708,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02750n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02750n" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00553n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01285n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00553n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039n" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08831" sboTerm="SBO:0000176" id="MAR08831" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08831" sboTerm="SBO:0000176" id="R_MAR08831" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -264721,7 +264725,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08831">
+            <rdf:Description rdf:about="#R_MAR08831">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PIK5n"/>
@@ -264733,19 +264737,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02750n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02750n" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00554n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01285n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00554n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039n" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="PIP5K59B"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08833" sboTerm="SBO:0000176" id="MAR08833" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08833" sboTerm="SBO:0000176" id="R_MAR08833" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -264753,7 +264757,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08833">
+            <rdf:Description rdf:about="#R_MAR08833">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.4.11"/>
@@ -264766,19 +264770,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02750n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02750n" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02173n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00237n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02173n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00237n" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Plc21C"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08835" sboTerm="SBO:0000176" id="MAR08835" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08835" sboTerm="SBO:0000176" id="R_MAR08835" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -264786,7 +264790,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08835">
+            <rdf:Description rdf:about="#R_MAR08835">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.4.21"/>
@@ -264799,14 +264803,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00531c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM00531c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00521c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00521c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -264815,7 +264819,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08836" sboTerm="SBO:0000176" id="MAR08836" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08836" sboTerm="SBO:0000176" id="R_MAR08836" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -264823,7 +264827,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08836">
+            <rdf:Description rdf:about="#R_MAR08836">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.4.21"/>
@@ -264836,14 +264840,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00531n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040n" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM00531n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040n" stoichiometry="2" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00521n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00521n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759n" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -264852,7 +264856,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03923" sboTerm="SBO:0000176" id="MAR03923" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03923" sboTerm="SBO:0000176" id="R_MAR03923" name="glycine:NAD+ 2-oxidoreductase (tetrahydrofolate-methylene-adding)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -264861,7 +264865,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03923">
+            <rdf:Description rdf:about="#R_MAR03923">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.8.1.4"/>
@@ -264876,16 +264880,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01986m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02980m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02980m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01045m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01596m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02578m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01045m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01596m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02578m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:and>
@@ -264896,7 +264900,7 @@
           </fbc:and>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03925" sboTerm="SBO:0000176" id="MAR03925" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03925" sboTerm="SBO:0000176" id="R_MAR03925" name="5,6,7,8-tetrahydrobiopterin:NAD+ oxidoreductase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -264905,7 +264909,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03925">
+            <rdf:Description rdf:about="#R_MAR03925">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.5.1.34"/>
@@ -264920,19 +264924,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01698c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01698c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02552c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02978c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02978c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Dhpr"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03972" sboTerm="SBO:0000176" id="MAR03972" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03972" sboTerm="SBO:0000176" id="R_MAR03972" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -264940,7 +264944,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03972">
+            <rdf:Description rdf:about="#R_MAR03972">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FldAct"/>
@@ -264952,15 +264956,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01831c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02980c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01831c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02980c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01045c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01045c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR04332" sboTerm="SBO:0000176" id="MAR04332" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04332" sboTerm="SBO:0000176" id="R_MAR04332" name="5,6,7,8-tetrahydrofolate:NAD+ oxidoreductase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -264969,7 +264973,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04332">
+            <rdf:Description rdf:about="#R_MAR04332">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.5.1.3"/>
@@ -264982,19 +264986,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01700c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01700c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02552c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02980c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02980c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Dhfr"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04333" sboTerm="SBO:0000176" id="MAR04333" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04333" sboTerm="SBO:0000176" id="R_MAR04333" name="5,6,7,8-tetrahydrofolate:NADP+ oxidoreductase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -265003,7 +265007,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04333">
+            <rdf:Description rdf:about="#R_MAR04333">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.5.1.3"/>
@@ -265017,19 +265021,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01700c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01700c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02980c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02980c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Dhfr"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04335" sboTerm="SBO:0000176" id="MAR04335" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04335" sboTerm="SBO:0000176" id="R_MAR04335" name="5,6,7,8-tetrahydrofolate:NADP+ oxidoreductase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -265038,7 +265042,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04335">
+            <rdf:Description rdf:about="#R_MAR04335">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.5.1.3"/>
@@ -265051,19 +265055,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01700m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01700m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02554m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02980m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02980m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Dhfr"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04336" sboTerm="SBO:0000176" id="MAR04336" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04336" sboTerm="SBO:0000176" id="R_MAR04336" name="10-formyltetrahydrofolate:NADP+ oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -265072,7 +265076,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04336">
+            <rdf:Description rdf:about="#R_MAR04336">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.5.1.6"/>
@@ -265086,21 +265090,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00266c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00266c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01596c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02980c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01596c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02980c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG8665"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04338" sboTerm="SBO:0000176" id="MAR04338" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04338" sboTerm="SBO:0000176" id="R_MAR04338" name="Formate:tetrahydrofolate ligase (ADP-forming)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -265109,7 +265113,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04338">
+            <rdf:Description rdf:about="#R_MAR04338">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.5.4.9"/>
@@ -265124,20 +265128,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01833c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02980c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01833c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02980c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00266c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00266c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="pug"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04340" sboTerm="SBO:0000176" id="MAR04340" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04340" sboTerm="SBO:0000176" id="R_MAR04340" name="Formate:tetrahydrofolate ligase (ADP-forming)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -265146,7 +265150,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04340">
+            <rdf:Description rdf:about="#R_MAR04340">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.5.4.9"/>
@@ -265161,14 +265165,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01833m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02980m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01833m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02980m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00266m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01285m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00266m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -265177,7 +265181,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04440" sboTerm="SBO:0000176" id="MAR04440" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04440" sboTerm="SBO:0000176" id="R_MAR04440" name="5,10-methylenetetrahydrofolate:NAD+ oxidoreductase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 2</p>
@@ -265186,7 +265190,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04440">
+            <rdf:Description rdf:about="#R_MAR04440">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.5.1.15"/>
@@ -265200,18 +265204,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01044m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01044m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01045m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01045m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Nmdmc"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04442" sboTerm="SBO:0000176" id="MAR04442" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04442" sboTerm="SBO:0000176" id="R_MAR04442" name="5,10-methylenetetrahydrofolate:NADP+ oxidoreductase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -265220,7 +265224,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04442">
+            <rdf:Description rdf:about="#R_MAR04442">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.5.1.5"/>
@@ -265234,18 +265238,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01044c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01044c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01045c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01045c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="pug"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04444" sboTerm="SBO:0000176" id="MAR04444" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04444" sboTerm="SBO:0000176" id="R_MAR04444" name="5,10-methylenetetrahydrofolate:NADP+ oxidoreductase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -265254,7 +265258,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04444">
+            <rdf:Description rdf:about="#R_MAR04444">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.5.1.5"/>
@@ -265268,12 +265272,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01044m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01044m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01045m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01045m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -265282,7 +265286,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04446" sboTerm="SBO:0000176" id="MAR04446" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04446" sboTerm="SBO:0000176" id="R_MAR04446" name="5-methyltetrahydrofolate:NADP+ oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -265291,7 +265295,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04446">
+            <rdf:Description rdf:about="#R_MAR04446">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.5.1.20"/>
@@ -265305,19 +265309,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01045c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01045c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01115c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01115c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG7560"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04448" sboTerm="SBO:0000176" id="MAR04448" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04448" sboTerm="SBO:0000176" id="R_MAR04448" name="5-methyltetrahydrofolate:NAD+ oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -265326,7 +265330,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04448">
+            <rdf:Description rdf:about="#R_MAR04448">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.5.1.20"/>
@@ -265339,19 +265343,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01045c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02553c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01045c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02553c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01115c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01115c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG7560"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04503" sboTerm="SBO:0000176" id="MAR04503" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04503" sboTerm="SBO:0000176" id="R_MAR04503" name="5,10-Methenyltetrahydrofolate 5-hydrolase (decyclizing)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -265360,7 +265364,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04503">
+            <rdf:Description rdf:about="#R_MAR04503">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.5.4.9"/>
@@ -265374,18 +265378,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00266c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00266c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01044c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01044c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="pug"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04505" sboTerm="SBO:0000176" id="MAR04505" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04505" sboTerm="SBO:0000176" id="R_MAR04505" name="5,10-Methenyltetrahydrofolate 5-hydrolase (decyclizing)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -265394,7 +265398,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04505">
+            <rdf:Description rdf:about="#R_MAR04505">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.5.4.9"/>
@@ -265408,12 +265412,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00266m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00266m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01044m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01044m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -265422,7 +265426,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04654" sboTerm="SBO:0000176" id="MAR04654" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04654" sboTerm="SBO:0000176" id="R_MAR04654" name="dihydrofolate:NAD+ oxidoreductase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -265431,7 +265435,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04654">
+            <rdf:Description rdf:about="#R_MAR04654">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.5.1.3"/>
@@ -265444,18 +265448,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01830c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01830c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01700c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01700c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Dhfr"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04655" sboTerm="SBO:0000176" id="MAR04655" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04655" sboTerm="SBO:0000176" id="R_MAR04655" name="dihydrofolate:NADP+ oxidoreductase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -265464,7 +265468,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04655">
+            <rdf:Description rdf:about="#R_MAR04655">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.5.1.3"/>
@@ -265478,18 +265482,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01830c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01830c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01700c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01700c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Dhfr"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04656" sboTerm="SBO:0000176" id="MAR04656" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04656" sboTerm="SBO:0000176" id="R_MAR04656" name="dihydrofolate:NADP+ oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -265498,7 +265502,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04656">
+            <rdf:Description rdf:about="#R_MAR04656">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.5.1.3"/>
@@ -265511,18 +265515,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01830m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01830m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01700m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01700m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Dhfr"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04665" sboTerm="SBO:0000176" id="MAR04665" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04665" sboTerm="SBO:0000176" id="R_MAR04665" name="S-Aminomethyldihydrolipoylprotein:(6S)-tetrahydrofolate aminomethyltransferase (ammonia-forming)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -265531,7 +265535,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04665">
+            <rdf:Description rdf:about="#R_MAR04665">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.1.2.10"/>
@@ -265544,12 +265548,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01044m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01044m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01100m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01100m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:and>
@@ -265560,7 +265564,7 @@
           </fbc:and>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04666" sboTerm="SBO:0000176" id="MAR04666" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04666" sboTerm="SBO:0000176" id="R_MAR04666" name="5-Formyltetrahydrofolate cyclo-ligase (ADP-forming)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -265569,7 +265573,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04666">
+            <rdf:Description rdf:about="#R_MAR04666">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.3.3.2"/>
@@ -265582,19 +265586,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01100m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01100m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01044m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01285m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01044m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Mthfs"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07145" sboTerm="SBO:0000176" id="MAR07145" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07145" sboTerm="SBO:0000176" id="R_MAR07145" name="GTP 3&apos;,8-cyclase [(8S)-3&apos;,8-cyclo-7,8-dihydroguanosine 5&apos;-triphosphate-forming]" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -265602,7 +265606,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07145">
+            <rdf:Description rdf:about="#R_MAR07145">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.1.99.18"/>
@@ -265615,18 +265619,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02034c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02034c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01618c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01618c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Mocs1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07146" sboTerm="SBO:0000176" id="MAR07146" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07146" sboTerm="SBO:0000176" id="R_MAR07146" name="thiocarboxylated molybdopterin synthase:cyclic pyranopterin phosphate sulfurtransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -265634,7 +265638,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07146">
+            <rdf:Description rdf:about="#R_MAR07146">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R09395"/>
@@ -265646,22 +265650,22 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01618c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="7" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="8" constant="true"/>
-          <speciesReference species="MAM02682c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01618c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="7" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="8" constant="true"/>
+          <speciesReference species="M_MAM02682c" stoichiometry="2" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040c" stoichiometry="8" constant="true"/>
-          <speciesReference species="MAM02488c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="8" constant="true"/>
-          <speciesReference species="MAM02681c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="8" constant="true"/>
+          <speciesReference species="M_MAM02488c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="8" constant="true"/>
+          <speciesReference species="M_MAM02681c" stoichiometry="2" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Mocs2B"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07147" sboTerm="SBO:0000176" id="MAR07147" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07147" sboTerm="SBO:0000176" id="R_MAR07147" name="ATP:molybdopterin adenylyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -265669,7 +265673,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07147">
+            <rdf:Description rdf:about="#R_MAR07147">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.7.75"/>
@@ -265682,19 +265686,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02488c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02488c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01281c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01281c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="cin"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07908" sboTerm="SBO:0000176" id="MAR07908" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07908" sboTerm="SBO:0000176" id="R_MAR07908" name="10-Formyltetrahydrofolate:L-glutamate ligase (ADP-forming)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -265702,7 +265706,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07908">
+            <rdf:Description rdf:about="#R_MAR07908">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.3.2.17"/>
@@ -265716,21 +265720,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00266c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371c" stoichiometry="4" constant="true"/>
-          <speciesReference species="MAM01974c" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM00266c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM01974c" stoichiometry="4" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00267c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01285c" stoichiometry="4" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="4" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM00267c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="4" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Fpgs"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07909" sboTerm="SBO:0000176" id="MAR07909" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07909" sboTerm="SBO:0000176" id="R_MAR07909" name="10-Formyltetrahydrofolate:L-glutamate ligase (ADP-forming)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -265738,7 +265742,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07909">
+            <rdf:Description rdf:about="#R_MAR07909">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.3.2.17"/>
@@ -265752,21 +265756,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00266m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371m" stoichiometry="4" constant="true"/>
-          <speciesReference species="MAM01974m" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM00266m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371m" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM01974m" stoichiometry="4" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00267m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01285m" stoichiometry="4" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="4" constant="true"/>
-          <speciesReference species="MAM02751m" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM00267m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285m" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM02751m" stoichiometry="4" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Fpgs"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07910" sboTerm="SBO:0000176" id="MAR07910" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07910" sboTerm="SBO:0000176" id="R_MAR07910" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -265774,7 +265778,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07910">
+            <rdf:Description rdf:about="#R_MAR07910">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.3.2.17"/>
@@ -265787,21 +265791,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00267c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01974c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00267c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01974c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00268c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00268c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Fpgs"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07911" sboTerm="SBO:0000176" id="MAR07911" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07911" sboTerm="SBO:0000176" id="R_MAR07911" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -265809,7 +265813,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07911">
+            <rdf:Description rdf:about="#R_MAR07911">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.3.2.17"/>
@@ -265822,21 +265826,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00267m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01974m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00267m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01974m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00268m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01285m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00268m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Fpgs"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07912" sboTerm="SBO:0000176" id="MAR07912" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07912" sboTerm="SBO:0000176" id="R_MAR07912" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -265844,7 +265848,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07912">
+            <rdf:Description rdf:about="#R_MAR07912">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.3.2.17"/>
@@ -265857,21 +265861,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00268c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01974c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00268c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01974c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00269c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00269c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Fpgs"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07913" sboTerm="SBO:0000176" id="MAR07913" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07913" sboTerm="SBO:0000176" id="R_MAR07913" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -265879,7 +265883,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07913">
+            <rdf:Description rdf:about="#R_MAR07913">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.3.2.17"/>
@@ -265892,21 +265896,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00268m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01974m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00268m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01974m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00269m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01285m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00269m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Fpgs"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07916" sboTerm="SBO:0000176" id="MAR07916" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07916" sboTerm="SBO:0000176" id="R_MAR07916" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -265914,7 +265918,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07916">
+            <rdf:Description rdf:about="#R_MAR07916">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.4.19.9"/>
@@ -265926,18 +265930,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00267l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040l" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM00267l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="4" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00266l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01974l" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM00266l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01974l" stoichiometry="4" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="l372Dp"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07919" sboTerm="SBO:0000176" id="MAR07919" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07919" sboTerm="SBO:0000176" id="R_MAR07919" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -265945,7 +265949,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07919">
+            <rdf:Description rdf:about="#R_MAR07919">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.4.19.9"/>
@@ -265957,18 +265961,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00268l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00268l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00267l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01974l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00267l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01974l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="l372Dp"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07920" sboTerm="SBO:0000176" id="MAR07920" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07920" sboTerm="SBO:0000176" id="R_MAR07920" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -265976,7 +265980,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07920">
+            <rdf:Description rdf:about="#R_MAR07920">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.4.19.9"/>
@@ -265988,18 +265992,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00267e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040e" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM00267e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040e" stoichiometry="4" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00266e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01974e" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM00266e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01974e" stoichiometry="4" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="l372Dp"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07921" sboTerm="SBO:0000176" id="MAR07921" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07921" sboTerm="SBO:0000176" id="R_MAR07921" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -266007,7 +266011,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07921">
+            <rdf:Description rdf:about="#R_MAR07921">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.4.19.9"/>
@@ -266019,18 +266023,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00268e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00268e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00267e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01974e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00267e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01974e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="l372Dp"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07922" sboTerm="SBO:0000176" id="MAR07922" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07922" sboTerm="SBO:0000176" id="R_MAR07922" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -266038,7 +266042,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07922">
+            <rdf:Description rdf:about="#R_MAR07922">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.4.19.9"/>
@@ -266050,18 +266054,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00269e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00269e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00268e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01974e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00268e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01974e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="l372Dp"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07925" sboTerm="SBO:0000176" id="MAR07925" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07925" sboTerm="SBO:0000176" id="R_MAR07925" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -266069,7 +266073,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07925">
+            <rdf:Description rdf:about="#R_MAR07925">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.4.19.9"/>
@@ -266081,18 +266085,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00269l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00269l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00268l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01974l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00268l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01974l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="l372Dp"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08105" sboTerm="SBO:0000176" id="MAR08105" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08105" sboTerm="SBO:0000176" id="R_MAR08105" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -266100,7 +266104,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08105">
+            <rdf:Description rdf:about="#R_MAR08105">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.3.2.17"/>
@@ -266113,21 +266117,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="4" constant="true"/>
-          <speciesReference species="MAM01700c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01974c" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM01700c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01974c" stoichiometry="4" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="4" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="4" constant="true"/>
-          <speciesReference species="MAM02691c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM02691c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="4" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Fpgs"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08106" sboTerm="SBO:0000176" id="MAR08106" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08106" sboTerm="SBO:0000176" id="R_MAR08106" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -266135,7 +266139,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08106">
+            <rdf:Description rdf:about="#R_MAR08106">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.3.2.17"/>
@@ -266148,21 +266152,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01974c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02691c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01974c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02691c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02118c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02118c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Fpgs"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08107" sboTerm="SBO:0000176" id="MAR08107" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08107" sboTerm="SBO:0000176" id="R_MAR08107" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -266170,7 +266174,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08107">
+            <rdf:Description rdf:about="#R_MAR08107">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.3.2.17"/>
@@ -266183,21 +266187,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01974c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02118c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01974c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02118c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02104c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02104c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Fpgs"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08108" sboTerm="SBO:0000176" id="MAR08108" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08108" sboTerm="SBO:0000176" id="R_MAR08108" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -266205,7 +266209,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08108">
+            <rdf:Description rdf:about="#R_MAR08108">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.3.2.17"/>
@@ -266218,21 +266222,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="4" constant="true"/>
-          <speciesReference species="MAM01974c" stoichiometry="4" constant="true"/>
-          <speciesReference species="MAM02980c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM01974c" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM02980c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="4" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="4" constant="true"/>
-          <speciesReference species="MAM02692c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM02692c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="4" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Fpgs"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08109" sboTerm="SBO:0000176" id="MAR08109" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08109" sboTerm="SBO:0000176" id="R_MAR08109" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -266240,7 +266244,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08109">
+            <rdf:Description rdf:about="#R_MAR08109">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.3.2.17"/>
@@ -266253,21 +266257,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01974c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02692c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01974c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02692c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02119c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02119c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Fpgs"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08110" sboTerm="SBO:0000176" id="MAR08110" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08110" sboTerm="SBO:0000176" id="R_MAR08110" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -266275,7 +266279,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08110">
+            <rdf:Description rdf:about="#R_MAR08110">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.3.2.17"/>
@@ -266288,21 +266292,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01974c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02119c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01974c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02119c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02105c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02105c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Fpgs"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08112" sboTerm="SBO:0000176" id="MAR08112" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08112" sboTerm="SBO:0000176" id="R_MAR08112" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -266310,7 +266314,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08112">
+            <rdf:Description rdf:about="#R_MAR08112">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.3.2.17"/>
@@ -266323,21 +266327,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371m" stoichiometry="4" constant="true"/>
-          <speciesReference species="MAM01700m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01974m" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM01371m" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM01700m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01974m" stoichiometry="4" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285m" stoichiometry="4" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="4" constant="true"/>
-          <speciesReference species="MAM02691m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751m" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM01285m" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM02691m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751m" stoichiometry="4" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Fpgs"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08113" sboTerm="SBO:0000176" id="MAR08113" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08113" sboTerm="SBO:0000176" id="R_MAR08113" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -266345,7 +266349,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08113">
+            <rdf:Description rdf:about="#R_MAR08113">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.3.2.17"/>
@@ -266358,21 +266362,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01974m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02691m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01974m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02691m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02118m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02118m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Fpgs"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08114" sboTerm="SBO:0000176" id="MAR08114" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08114" sboTerm="SBO:0000176" id="R_MAR08114" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -266380,7 +266384,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08114">
+            <rdf:Description rdf:about="#R_MAR08114">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.3.2.17"/>
@@ -266393,21 +266397,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01974m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02118m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01974m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02118m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02104m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02104m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Fpgs"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08115" sboTerm="SBO:0000176" id="MAR08115" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08115" sboTerm="SBO:0000176" id="R_MAR08115" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -266415,7 +266419,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08115">
+            <rdf:Description rdf:about="#R_MAR08115">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.3.2.17"/>
@@ -266428,21 +266432,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371m" stoichiometry="4" constant="true"/>
-          <speciesReference species="MAM01974m" stoichiometry="4" constant="true"/>
-          <speciesReference species="MAM02980m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371m" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM01974m" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM02980m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285m" stoichiometry="4" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="4" constant="true"/>
-          <speciesReference species="MAM02692m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751m" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM01285m" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM02692m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751m" stoichiometry="4" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Fpgs"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08116" sboTerm="SBO:0000176" id="MAR08116" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08116" sboTerm="SBO:0000176" id="R_MAR08116" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -266450,7 +266454,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08116">
+            <rdf:Description rdf:about="#R_MAR08116">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.3.2.17"/>
@@ -266463,21 +266467,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01974m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02692m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01974m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02692m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02119m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02119m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Fpgs"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08117" sboTerm="SBO:0000176" id="MAR08117" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08117" sboTerm="SBO:0000176" id="R_MAR08117" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -266485,7 +266489,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08117">
+            <rdf:Description rdf:about="#R_MAR08117">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.3.2.17"/>
@@ -266498,21 +266502,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01974m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02119m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01974m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02119m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02105m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02105m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Fpgs"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08129" sboTerm="SBO:0000176" id="MAR08129" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08129" sboTerm="SBO:0000176" id="R_MAR08129" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -266520,7 +266524,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08129">
+            <rdf:Description rdf:about="#R_MAR08129">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.4.19.9"/>
@@ -266532,18 +266536,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040e" stoichiometry="4" constant="true"/>
-          <speciesReference species="MAM02691e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040e" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM02691e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01700e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01974e" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM01700e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01974e" stoichiometry="4" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="l372Dp"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08130" sboTerm="SBO:0000176" id="MAR08130" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08130" sboTerm="SBO:0000176" id="R_MAR08130" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -266551,7 +266555,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08130">
+            <rdf:Description rdf:about="#R_MAR08130">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.4.19.9"/>
@@ -266563,18 +266567,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040l" stoichiometry="4" constant="true"/>
-          <speciesReference species="MAM02691l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM02691l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01700l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01974l" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM01700l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01974l" stoichiometry="4" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="l372Dp"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08132" sboTerm="SBO:0000176" id="MAR08132" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08132" sboTerm="SBO:0000176" id="R_MAR08132" name="tetrahydropteroyl-poly-gamma-glutamate gamma-glutamylhydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -266582,7 +266586,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08132">
+            <rdf:Description rdf:about="#R_MAR08132">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.4.19.9"/>
@@ -266595,18 +266599,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040e" stoichiometry="4" constant="true"/>
-          <speciesReference species="MAM02692e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040e" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM02692e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01974e" stoichiometry="4" constant="true"/>
-          <speciesReference species="MAM02980e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01974e" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM02980e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="l372Dp"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08133" sboTerm="SBO:0000176" id="MAR08133" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08133" sboTerm="SBO:0000176" id="R_MAR08133" name="tetrahydropteroyl-poly-gamma-glutamate gamma-glutamylhydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -266614,7 +266618,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08133">
+            <rdf:Description rdf:about="#R_MAR08133">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.4.19.9"/>
@@ -266627,18 +266631,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040l" stoichiometry="4" constant="true"/>
-          <speciesReference species="MAM02692l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM02692l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01974l" stoichiometry="4" constant="true"/>
-          <speciesReference species="MAM02980l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01974l" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM02980l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="l372Dp"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08135" sboTerm="SBO:0000176" id="MAR08135" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08135" sboTerm="SBO:0000176" id="R_MAR08135" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -266646,7 +266650,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08135">
+            <rdf:Description rdf:about="#R_MAR08135">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.4.19.9"/>
@@ -266658,18 +266662,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02118e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02118e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01974e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02691e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01974e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02691e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="l372Dp"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08136" sboTerm="SBO:0000176" id="MAR08136" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08136" sboTerm="SBO:0000176" id="R_MAR08136" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -266677,7 +266681,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08136">
+            <rdf:Description rdf:about="#R_MAR08136">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.4.19.9"/>
@@ -266689,18 +266693,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02118l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02118l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01974l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02691l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01974l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02691l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="l372Dp"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08137" sboTerm="SBO:0000176" id="MAR08137" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08137" sboTerm="SBO:0000176" id="R_MAR08137" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -266708,7 +266712,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08137">
+            <rdf:Description rdf:about="#R_MAR08137">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.4.19.9"/>
@@ -266720,18 +266724,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02119e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02119e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01974e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02692e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01974e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02692e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="l372Dp"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08138" sboTerm="SBO:0000176" id="MAR08138" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08138" sboTerm="SBO:0000176" id="R_MAR08138" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -266739,7 +266743,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08138">
+            <rdf:Description rdf:about="#R_MAR08138">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.4.19.9"/>
@@ -266751,18 +266755,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02119l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02119l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01974l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02692l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01974l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02692l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="l372Dp"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08139" sboTerm="SBO:0000176" id="MAR08139" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08139" sboTerm="SBO:0000176" id="R_MAR08139" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -266770,7 +266774,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08139">
+            <rdf:Description rdf:about="#R_MAR08139">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.4.19.9"/>
@@ -266782,18 +266786,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02104e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02104e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01974e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02118e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01974e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02118e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="l372Dp"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08140" sboTerm="SBO:0000176" id="MAR08140" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08140" sboTerm="SBO:0000176" id="R_MAR08140" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -266801,7 +266805,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08140">
+            <rdf:Description rdf:about="#R_MAR08140">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.4.19.9"/>
@@ -266813,18 +266817,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02104l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02104l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01974l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02118l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01974l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02118l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="l372Dp"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08141" sboTerm="SBO:0000176" id="MAR08141" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08141" sboTerm="SBO:0000176" id="R_MAR08141" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -266832,7 +266836,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08141">
+            <rdf:Description rdf:about="#R_MAR08141">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.4.19.9"/>
@@ -266844,18 +266848,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02105e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02105e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01974e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02119e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01974e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02119e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="l372Dp"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08142" sboTerm="SBO:0000176" id="MAR08142" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08142" sboTerm="SBO:0000176" id="R_MAR08142" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -266863,7 +266867,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08142">
+            <rdf:Description rdf:about="#R_MAR08142">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.4.19.9"/>
@@ -266875,18 +266879,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02105l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02105l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01974l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02119l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01974l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02119l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="l372Dp"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08143" sboTerm="SBO:0000176" id="MAR08143" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08143" sboTerm="SBO:0000176" id="R_MAR08143" name="5-Formyltetrahydrofolate cyclo-ligase (ADP-forming)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -266894,7 +266898,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08143">
+            <rdf:Description rdf:about="#R_MAR08143">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.3.3.2"/>
@@ -266908,19 +266912,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01100c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01100c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01044c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01044c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Mthfs"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08144" sboTerm="SBO:0000176" id="MAR08144" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08144" sboTerm="SBO:0000176" id="R_MAR08144" name="5,10-methylenetetrahydrofolate:NAD+ oxidoreductase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -266928,7 +266932,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08144">
+            <rdf:Description rdf:about="#R_MAR08144">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.5.1.5"/>
@@ -266942,18 +266946,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01044c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01044c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01045c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01045c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="pug"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08758" sboTerm="SBO:0000176" id="MAR08758" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08758" sboTerm="SBO:0000176" id="R_MAR08758" name="formate:NAD+ oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -266961,7 +266965,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08758">
+            <rdf:Description rdf:about="#R_MAR08758">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.5.1.6"/>
@@ -266977,18 +266981,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01833c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01833c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01596c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01596c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG8665"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07661" sboTerm="SBO:0000176" id="MAR07661" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07661" sboTerm="SBO:0000176" id="R_MAR07661" name="N6-D-Biotinyl-L-lysine amidohydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -266996,7 +267000,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07661">
+            <rdf:Description rdf:about="#R_MAR07661">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.5.1.12"/>
@@ -267011,12 +267015,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01400c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01400c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01401c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02426c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01401c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02426c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -267025,7 +267029,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07662" sboTerm="SBO:0000176" id="MAR07662" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07662" sboTerm="SBO:0000176" id="R_MAR07662" name="N6-D-Biotinyl-L-lysine amidohydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -267033,7 +267037,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07662">
+            <rdf:Description rdf:about="#R_MAR07662">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.5.1.12"/>
@@ -267048,12 +267052,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01400n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01400n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040n" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01401n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02426n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01401n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02426n" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -267062,7 +267066,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07663" sboTerm="SBO:0000176" id="MAR07663" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07663" sboTerm="SBO:0000176" id="R_MAR07663" name="N6-D-Biotinyl-L-lysine amidohydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -267070,7 +267074,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07663">
+            <rdf:Description rdf:about="#R_MAR07663">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.5.1.12"/>
@@ -267085,12 +267089,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01400e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01400e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01401e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02426e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01401e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02426e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -267099,7 +267103,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07668" sboTerm="SBO:0000176" id="MAR07668" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07668" sboTerm="SBO:0000176" id="R_MAR07668" name="biotin:CoA ligase (AMP-forming)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -267107,7 +267111,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07668">
+            <rdf:Description rdf:about="#R_MAR07668">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.3.4.9"/>
@@ -267124,19 +267128,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01401c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01401c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01402c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01402c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Hcs"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07669" sboTerm="SBO:0000176" id="MAR07669" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07669" sboTerm="SBO:0000176" id="R_MAR07669" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -267144,7 +267148,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07669">
+            <rdf:Description rdf:about="#R_MAR07669">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/APOCF"/>
@@ -267156,16 +267160,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00185c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02426c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00185c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02426c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01356c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01356c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07670" sboTerm="SBO:0000176" id="MAR07670" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07670" sboTerm="SBO:0000176" id="R_MAR07670" name="Biotinyl-5&apos;-AMP:apo-[carboxylase] ligase (AMP-forming)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -267173,7 +267177,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07670">
+            <rdf:Description rdf:about="#R_MAR07670">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.3.4.9"/>
@@ -267191,19 +267195,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01356c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01402c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01356c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01402c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01334c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01357c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01357c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Hcs"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07671" sboTerm="SBO:0000176" id="MAR07671" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07671" sboTerm="SBO:0000176" id="R_MAR07671" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -267211,7 +267215,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07671">
+            <rdf:Description rdf:about="#R_MAR07671">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.4.-.-"/>
@@ -267225,15 +267229,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01357c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01357c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00185c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01400c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00185c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01400c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07672" sboTerm="SBO:0000176" id="MAR07672" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07672" sboTerm="SBO:0000176" id="R_MAR07672" name="biotin-carboxyl-carrier-protein:carbon-dioxide ligase (ADP-forming)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -267241,7 +267245,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07672">
+            <rdf:Description rdf:about="#R_MAR07672">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.3.4.14"/>
@@ -267253,21 +267257,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01357c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01357c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01422c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01422c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="ACC"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07673" sboTerm="SBO:0000176" id="MAR07673" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07673" sboTerm="SBO:0000176" id="R_MAR07673" name="carboxybiotin-carboxyl-carrier-protein:acetyl-CoA carboxytransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -267275,7 +267279,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07673">
+            <rdf:Description rdf:about="#R_MAR07673">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.4.1.2"/>
@@ -267287,18 +267291,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01261c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01422c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01422c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01357c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02444c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01357c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02444c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="ACC"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04160" sboTerm="SBO:0000176" id="MAR04160" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04160" sboTerm="SBO:0000176" id="R_MAR04160" name="GTP 7,8-8,9-dihydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -267307,7 +267311,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04160">
+            <rdf:Description rdf:about="#R_MAR04160">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.5.4.16"/>
@@ -267321,19 +267325,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02034c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02034c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01155c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01833c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01155c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01833c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Pu"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04162" sboTerm="SBO:0000176" id="MAR04162" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04162" sboTerm="SBO:0000176" id="R_MAR04162" name="GTP 7,8-8,9-dihydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -267342,7 +267346,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04162">
+            <rdf:Description rdf:about="#R_MAR04162">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.5.4.16"/>
@@ -267356,19 +267360,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02034n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02034n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040n" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01155n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01833n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01155n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01833n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039n" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Pu"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04163" sboTerm="SBO:0000176" id="MAR04163" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04163" sboTerm="SBO:0000176" id="R_MAR04163" name="2-amino-4-hydroxy-6-(erythro-1,2,3-trihydroxypropyl) dihydropteridine triphosphate lyase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -267377,7 +267381,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04163">
+            <rdf:Description rdf:about="#R_MAR04163">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.3.12"/>
@@ -267391,17 +267395,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01155c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01155c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01170c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03057c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01170c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03057c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="pr"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04165" sboTerm="SBO:0000176" id="MAR04165" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04165" sboTerm="SBO:0000176" id="R_MAR04165" name="tetrahydrobiopterin:NADP+ oxidoreductase (6-pyruvoyltetrahydropterin-forming)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -267409,7 +267413,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04165">
+            <rdf:Description rdf:about="#R_MAR04165">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.153"/>
@@ -267422,19 +267426,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01170c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01170c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="2" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02554c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02978c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02978c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Sptr"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04166" sboTerm="SBO:0000176" id="MAR04166" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04166" sboTerm="SBO:0000176" id="R_MAR04166" name="6-Lactoyl-5,6,7,8-tetrahydropterin:NADP+ 2&apos;-oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -267443,7 +267447,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04166">
+            <rdf:Description rdf:about="#R_MAR04166">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.153"/>
@@ -267457,19 +267461,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01170c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01170c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01164c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01164c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Sptr"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04167" sboTerm="SBO:0000176" id="MAR04167" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04167" sboTerm="SBO:0000176" id="R_MAR04167" name="tetrahydrobiopterin:NADP+ oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -267478,7 +267482,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04167">
+            <rdf:Description rdf:about="#R_MAR04167">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.153"/>
@@ -267491,19 +267495,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01164c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01164c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02978c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02978c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Sptr"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04169" sboTerm="SBO:0000176" id="MAR04169" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04169" sboTerm="SBO:0000176" id="R_MAR04169" name="GTP 8,9-hydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -267512,7 +267516,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04169">
+            <rdf:Description rdf:about="#R_MAR04169">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.5.4.16"/>
@@ -267525,17 +267529,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02034c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02034c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01832c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01832c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Pu"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04170" sboTerm="SBO:0000176" id="MAR04170" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04170" sboTerm="SBO:0000176" id="R_MAR04170" name="GTP 8,9-hydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -267544,7 +267548,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04170">
+            <rdf:Description rdf:about="#R_MAR04170">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.5.4.16"/>
@@ -267557,17 +267561,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02034n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02034n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040n" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01832n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01832n" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Pu"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04523" sboTerm="SBO:0000176" id="MAR04523" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04523" sboTerm="SBO:0000176" id="R_MAR04523" name="5,6,7,8-tetrahydrobiopterin:NADP+ oxidoreductase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -267576,7 +267580,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04523">
+            <rdf:Description rdf:about="#R_MAR04523">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.5.1.34"/>
@@ -267590,19 +267594,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01698c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01698c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02978c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02978c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Dhpr"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04539" sboTerm="SBO:0000176" id="MAR04539" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04539" sboTerm="SBO:0000176" id="R_MAR04539" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -267611,7 +267615,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04539">
+            <rdf:Description rdf:about="#R_MAR04539">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.96"/>
@@ -267623,17 +267627,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00965c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00965c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02632c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02632c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Pcd"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04540" sboTerm="SBO:0000176" id="MAR04540" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04540" sboTerm="SBO:0000176" id="R_MAR04540" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -267642,7 +267646,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04540">
+            <rdf:Description rdf:about="#R_MAR04540">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.96"/>
@@ -267654,17 +267658,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00965n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00965n" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02632n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02632n" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Pcd"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04541" sboTerm="SBO:0000176" id="MAR04541" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04541" sboTerm="SBO:0000176" id="R_MAR04541" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -267672,7 +267676,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04541">
+            <rdf:Description rdf:about="#R_MAR04541">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.96"/>
@@ -267684,16 +267688,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02632c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02632c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02823c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02823c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Pcd"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04542" sboTerm="SBO:0000176" id="MAR04542" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04542" sboTerm="SBO:0000176" id="R_MAR04542" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -267702,7 +267706,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04542">
+            <rdf:Description rdf:about="#R_MAR04542">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.96"/>
@@ -267714,16 +267718,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02632n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02632n" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02823n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02823n" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Pcd"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04543" sboTerm="SBO:0000176" id="MAR04543" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04543" sboTerm="SBO:0000176" id="R_MAR04543" name="4a-hydroxytetrahydrobiopterin hydro-lyase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -267732,7 +267736,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04543">
+            <rdf:Description rdf:about="#R_MAR04543">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.96"/>
@@ -267745,17 +267749,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00965c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00965c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02823c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02823c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Pcd"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04544" sboTerm="SBO:0000176" id="MAR04544" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04544" sboTerm="SBO:0000176" id="R_MAR04544" name="4a-hydroxytetrahydrobiopterin hydro-lyase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -267764,7 +267768,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04544">
+            <rdf:Description rdf:about="#R_MAR04544">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.96"/>
@@ -267777,17 +267781,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00965n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00965n" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02823n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02823n" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Pcd"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04816" sboTerm="SBO:0000176" id="MAR04816" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04816" sboTerm="SBO:0000176" id="R_MAR04816" name="7,8-dihydroneopterin-3&apos;-triphosphate phosphohydrolase (alkaline optimum)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -267796,7 +267800,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04816">
+            <rdf:Description rdf:about="#R_MAR04816">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.3.1"/>
@@ -267809,13 +267813,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01155c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM01155c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="3" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01704c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM01704c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="3" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -267828,7 +267832,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04817" sboTerm="SBO:0000176" id="MAR04817" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04817" sboTerm="SBO:0000176" id="R_MAR04817" name="2-amino-4-hydroxy-6-(erythro-1,2,3-trihydroxypropyl) dihydropteridine triphosphate hydrolase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -267837,7 +267841,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04817">
+            <rdf:Description rdf:about="#R_MAR04817">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.5.4.16"/>
@@ -267850,17 +267854,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00574c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00574c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01155c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01155c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Pu"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04818" sboTerm="SBO:0000176" id="MAR04818" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04818" sboTerm="SBO:0000176" id="R_MAR04818" name="2-amino-4-hydroxy-6-(erythro-1,2,3-trihydroxypropyl) dihydropteridine triphosphate hydrolase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -267869,7 +267873,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04818">
+            <rdf:Description rdf:about="#R_MAR04818">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.5.4.16"/>
@@ -267882,17 +267886,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00574n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00574n" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01155n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01155n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040n" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Pu"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04833" sboTerm="SBO:0000176" id="MAR04833" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04833" sboTerm="SBO:0000176" id="R_MAR04833" name="formamidopyrimidine nucleoside triphosphate amidohydrolase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -267901,7 +267905,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04833">
+            <rdf:Description rdf:about="#R_MAR04833">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.5.4.16"/>
@@ -267914,19 +267918,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00575c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01833c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00575c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01833c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01832c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01832c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Pu"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04834" sboTerm="SBO:0000176" id="MAR04834" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04834" sboTerm="SBO:0000176" id="R_MAR04834" name="formamidopyrimidine nucleoside triphosphate amidohydrolase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -267935,7 +267939,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04834">
+            <rdf:Description rdf:about="#R_MAR04834">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.5.4.16"/>
@@ -267948,19 +267952,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00575n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01833n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00575n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01833n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039n" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01832n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01832n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040n" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Pu"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04835" sboTerm="SBO:0000176" id="MAR04835" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04835" sboTerm="SBO:0000176" id="R_MAR04835" name="2,5-diaminopyrimidine nucleoside triphosphate mutase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -267969,7 +267973,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04835">
+            <rdf:Description rdf:about="#R_MAR04835">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.5.4.16"/>
@@ -267982,16 +267986,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00574c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00574c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00575c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00575c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Pu"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04836" sboTerm="SBO:0000176" id="MAR04836" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04836" sboTerm="SBO:0000176" id="R_MAR04836" name="2,5-diaminopyrimidine nucleoside triphosphate mutase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -268000,7 +268004,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04836">
+            <rdf:Description rdf:about="#R_MAR04836">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.5.4.16"/>
@@ -268013,16 +268017,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00574n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00574n" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00575n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00575n" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Pu"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08538" sboTerm="SBO:0000176" id="MAR08538" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08538" sboTerm="SBO:0000176" id="R_MAR08538" name="4a-hydroxytetrahydrobiopterin hydro-lyase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -268030,7 +268034,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08538">
+            <rdf:Description rdf:about="#R_MAR08538">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.96"/>
@@ -268044,17 +268048,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00965c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00965c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01698c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01698c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Pcd"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08738" sboTerm="SBO:0000176" id="MAR08738" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08738" sboTerm="SBO:0000176" id="R_MAR08738" name="2-amino-4-hydroxy-6-(erythro-1,2,3-trihydroxypropyl) dihydropteridine triphosphate lyase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -268062,7 +268066,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08738">
+            <rdf:Description rdf:about="#R_MAR08738">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.3.12"/>
@@ -268076,17 +268080,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01155n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01155n" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01170n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03057n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01170n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03057n" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="pr"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08739" sboTerm="SBO:0000176" id="MAR08739" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08739" sboTerm="SBO:0000176" id="R_MAR08739" name="tetrahydrobiopterin:NADP+ oxidoreductase (6-pyruvoyltetrahydropterin-forming)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -268094,7 +268098,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08739">
+            <rdf:Description rdf:about="#R_MAR08739">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.153"/>
@@ -268108,19 +268112,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01170n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039n" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02555n" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01170n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039n" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02555n" stoichiometry="2" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02554n" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02978n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554n" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02978n" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Sptr"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08740" sboTerm="SBO:0000176" id="MAR08740" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08740" sboTerm="SBO:0000176" id="R_MAR08740" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -268128,7 +268132,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08740">
+            <rdf:Description rdf:about="#R_MAR08740">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/DIGALSGALSIDEtg"/>
@@ -268140,16 +268144,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01115c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01698c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01115c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01698c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01045c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02978c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01045c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02978c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR06393" sboTerm="SBO:0000176" id="MAR06393" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06393" sboTerm="SBO:0000176" id="R_MAR06393" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -268158,7 +268162,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#meta_MAR06393">
+            <rdf:Description rdf:about="#meta_R_MAR06393">
               <bqbiol:is>
                 <rdf:Bag/>
               </bqbiol:is>
@@ -268166,15 +268170,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02147c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02489c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02147c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02489c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01655c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01655c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR06394" sboTerm="SBO:0000176" id="MAR06394" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06394" sboTerm="SBO:0000176" id="R_MAR06394" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -268183,7 +268187,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06394">
+            <rdf:Description rdf:about="#R_MAR06394">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.8.5.-"/>
@@ -268195,15 +268199,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01368c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02394c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01368c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02394c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01655c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01702c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01655c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01702c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR06396" sboTerm="SBO:0000176" id="MAR06396" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06396" sboTerm="SBO:0000176" id="R_MAR06396" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -268211,7 +268215,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06396">
+            <rdf:Description rdf:about="#R_MAR06396">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/DASCBR"/>
@@ -268223,13 +268227,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01655c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01655c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01368c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01368c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -268238,7 +268242,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06405" sboTerm="SBO:0000176" id="MAR06405" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06405" sboTerm="SBO:0000176" id="R_MAR06405" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -268247,7 +268251,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06405">
+            <rdf:Description rdf:about="#R_MAR06405">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.13"/>
@@ -268259,12 +268263,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02399c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02399c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02394c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02426c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02394c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02426c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -268276,7 +268280,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08345" sboTerm="SBO:0000176" id="MAR08345" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08345" sboTerm="SBO:0000176" id="R_MAR08345" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -268284,7 +268288,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08345">
+            <rdf:Description rdf:about="#R_MAR08345">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/UROLACer"/>
@@ -268296,15 +268300,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01685r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01685r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01973r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01973r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08346" sboTerm="SBO:0000176" id="MAR08346" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08346" sboTerm="SBO:0000176" id="R_MAR08346" name="L-Gulono-1,4-lactone lactonohydrolase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -268312,7 +268316,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08346">
+            <rdf:Description rdf:about="#R_MAR08346">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GLNLASEer"/>
@@ -268327,15 +268331,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02379r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02379r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02378r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02378r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08348" sboTerm="SBO:0000176" id="MAR08348" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08348" sboTerm="SBO:0000176" id="R_MAR08348" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -268343,7 +268347,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08348">
+            <rdf:Description rdf:about="#R_MAR08348">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GLRASE"/>
@@ -268355,16 +268359,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01685c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01685c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02379c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02379c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08349" sboTerm="SBO:0000176" id="MAR08349" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08349" sboTerm="SBO:0000176" id="R_MAR08349" name="D-Glucuronolactone:NAD+ oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -268372,7 +268376,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08349">
+            <rdf:Description rdf:about="#R_MAR08349">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.2.1.3"/>
@@ -268387,14 +268391,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01685c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02552c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01685c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02552c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01681c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM02553c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01681c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM02553c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -268402,7 +268406,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08619" sboTerm="SBO:0000176" id="MAR08619" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08619" sboTerm="SBO:0000176" id="R_MAR08619" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -268410,7 +268414,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08619">
+            <rdf:Description rdf:about="#R_MAR08619">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ASCBOX"/>
@@ -268422,16 +268426,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01368c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02631c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01368c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02631c" stoichiometry="2" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01655c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02041c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01655c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041c" stoichiometry="2" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08620" sboTerm="SBO:0000176" id="MAR08620" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08620" sboTerm="SBO:0000176" id="R_MAR08620" name="glutathione:dehydroascorbate oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -268439,7 +268443,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08620">
+            <rdf:Description rdf:about="#R_MAR08620">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GTHDH"/>
@@ -268452,15 +268456,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01655c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02026c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01655c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026c" stoichiometry="2" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01368c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02027c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01368c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02027c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08621" sboTerm="SBO:0000176" id="MAR08621" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08621" sboTerm="SBO:0000176" id="R_MAR08621" name="L-Dehydroascorbate lactonohydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -268468,7 +268472,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08621">
+            <rdf:Description rdf:about="#R_MAR08621">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R04785"/>
@@ -268480,14 +268484,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01655c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01655c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00573c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00573c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08622" sboTerm="SBO:0000176" id="MAR08622" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08622" sboTerm="SBO:0000176" id="R_MAR08622" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -268495,7 +268499,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08622">
+            <rdf:Description rdf:about="#R_MAR08622">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/DOGULNO1"/>
@@ -268508,15 +268512,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00573c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00573c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01596c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02406c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01596c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02406c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08623" sboTerm="SBO:0000176" id="MAR08623" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08623" sboTerm="SBO:0000176" id="R_MAR08623" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -268524,7 +268528,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08623">
+            <rdf:Description rdf:about="#R_MAR08623">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/DOGULNO2"/>
@@ -268537,15 +268541,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00573c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00573c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01596c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02424c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01596c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02424c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08624" sboTerm="SBO:0000176" id="MAR08624" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08624" sboTerm="SBO:0000176" id="R_MAR08624" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -268553,7 +268557,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08624">
+            <rdf:Description rdf:about="#R_MAR08624">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/DOLASNT_Ler"/>
@@ -268565,16 +268569,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00573c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02041c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00573c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02661c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02992c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02661c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02992c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08625" sboTerm="SBO:0000176" id="MAR08625" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08625" sboTerm="SBO:0000176" id="R_MAR08625" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -268582,7 +268586,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08625">
+            <rdf:Description rdf:about="#R_MAR08625">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/DOLASNT_Uer"/>
@@ -268594,16 +268598,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00573c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00573c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02359c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02661c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02359c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02661c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03991" sboTerm="SBO:0000176" id="MAR03991" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03991" sboTerm="SBO:0000176" id="R_MAR03991" name="Fe(II):oxygen oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -268612,7 +268616,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03991">
+            <rdf:Description rdf:about="#R_MAR03991">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.16.3.1"/>
@@ -268625,13 +268629,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01821e" stoichiometry="4" constant="true"/>
-          <speciesReference species="MAM02039e" stoichiometry="4" constant="true"/>
-          <speciesReference species="MAM02630e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01821e" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM02630e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01822e" stoichiometry="4" constant="true"/>
-          <speciesReference species="MAM02040e" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01822e" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM02040e" stoichiometry="2" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -268643,7 +268647,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04657" sboTerm="SBO:0000176" id="MAR04657" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04657" sboTerm="SBO:0000176" id="R_MAR04657" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -268652,7 +268656,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04657">
+            <rdf:Description rdf:about="#R_MAR04657">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.37"/>
@@ -268664,18 +268668,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00630m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00630m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01074m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01596m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01074m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01596m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Alas"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04744" sboTerm="SBO:0000176" id="MAR04744" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04744" sboTerm="SBO:0000176" id="R_MAR04744" name="5-aminolevulinate hydro-lyase (adding 5-aminolevulinate and cyclizing" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -268684,7 +268688,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04744">
+            <rdf:Description rdf:about="#R_MAR04744">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.24"/>
@@ -268700,18 +268704,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01074c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01074c" stoichiometry="2" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02756c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02756c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Pbgs"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04746" sboTerm="SBO:0000176" id="MAR04746" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04746" sboTerm="SBO:0000176" id="R_MAR04746" name="porphobilinogen:(4-[2-carboxyethyl]-3-[carboxymethyl]pyrrol-2-yl)methyltransferase (hydrolysing)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -268720,7 +268724,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04746">
+            <rdf:Description rdf:about="#R_MAR04746">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.5.1.61"/>
@@ -268736,19 +268740,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02756c" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02756c" stoichiometry="4" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="4" constant="true"/>
-          <speciesReference species="MAM02151c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02578c" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM02151c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02578c" stoichiometry="4" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="l302640"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04748" sboTerm="SBO:0000176" id="MAR04748" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04748" sboTerm="SBO:0000176" id="R_MAR04748" name="Hydroxymethylbilane hydro-lyase(cyclizing)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -268757,7 +268761,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04748">
+            <rdf:Description rdf:about="#R_MAR04748">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.75"/>
@@ -268773,17 +268777,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02151c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02151c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03128c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03128c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Uros1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04750" sboTerm="SBO:0000176" id="MAR04750" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04750" sboTerm="SBO:0000176" id="R_MAR04750" name="Uroporphyrinogen-III carboxy-lyase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -268791,7 +268795,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04750">
+            <rdf:Description rdf:about="#R_MAR04750">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.1.1.37"/>
@@ -268806,18 +268810,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="4" constant="true"/>
-          <speciesReference species="MAM03128c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM03128c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01596c" stoichiometry="4" constant="true"/>
-          <speciesReference species="MAM01606c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01596c" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM01606c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Urod"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04752" sboTerm="SBO:0000176" id="MAR04752" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04752" sboTerm="SBO:0000176" id="R_MAR04752" name="Coproporphyrinogen:oxygen oxidoreductase(decarboxylating)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -268826,7 +268830,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04752">
+            <rdf:Description rdf:about="#R_MAR04752">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.3.3"/>
@@ -268841,20 +268845,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01606c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01606c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01596c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02804c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01596c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02804c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Coprox"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04755" sboTerm="SBO:0000176" id="MAR04755" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04755" sboTerm="SBO:0000176" id="R_MAR04755" name="protoporphyrinogen-IX:oxygen oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -268863,7 +268867,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04755">
+            <rdf:Description rdf:about="#R_MAR04755">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.3.4"/>
@@ -268877,18 +268881,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02630m" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM02804m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630m" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM02804m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02041m" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM02803m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041m" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM02803m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Ppox"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04757" sboTerm="SBO:0000176" id="MAR04757" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04757" sboTerm="SBO:0000176" id="R_MAR04757" name="protoporphyrinogen-IX:oxygen oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -268896,7 +268900,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04757">
+            <rdf:Description rdf:about="#R_MAR04757">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.3.4"/>
@@ -268910,18 +268914,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02630c" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM02804c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM02804c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02041c" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM02803c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041c" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM02803c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Ppox"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04762" sboTerm="SBO:0000176" id="MAR04762" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04762" sboTerm="SBO:0000176" id="R_MAR04762" name="Cytochrome c apocytochrome-c-lyase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -268929,7 +268933,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04762">
+            <rdf:Description rdf:about="#R_MAR04762">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.4.1.17"/>
@@ -268942,17 +268946,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01358m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02049m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01358m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02049m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01631m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01631m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Cchl"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04763" sboTerm="SBO:0000176" id="MAR04763" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04763" sboTerm="SBO:0000176" id="R_MAR04763" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -268960,7 +268964,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04763">
+            <rdf:Description rdf:about="#R_MAR04763">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.99.3"/>
@@ -268972,24 +268976,24 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01803c" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02050c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM01803c" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02050c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="3" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01399c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01595c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01802c" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM01822c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01957c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM01399c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01595c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01802c" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM01822c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01957c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="3" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Ho"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04764" sboTerm="SBO:0000176" id="MAR04764" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04764" sboTerm="SBO:0000176" id="R_MAR04764" name="Bilirubin:NAD+ oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -268997,7 +269001,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04764">
+            <rdf:Description rdf:about="#R_MAR04764">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.1.24"/>
@@ -269010,19 +269014,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01399c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01399c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01396c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01396c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG9471"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04768" sboTerm="SBO:0000176" id="MAR04768" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04768" sboTerm="SBO:0000176" id="R_MAR04768" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -269031,7 +269035,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04768">
+            <rdf:Description rdf:about="#R_MAR04768">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_4768"/>
@@ -269042,14 +269046,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="6" constant="true"/>
-          <speciesReference species="MAM03126c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="6" constant="true"/>
+          <speciesReference species="M_MAM03126c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03128c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03128c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR04769" sboTerm="SBO:0000176" id="MAR04769" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04769" sboTerm="SBO:0000176" id="R_MAR04769" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -269058,7 +269062,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04769">
+            <rdf:Description rdf:about="#R_MAR04769">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/RE3637C"/>
@@ -269068,14 +269072,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="6" constant="true"/>
-          <speciesReference species="MAM03125c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="6" constant="true"/>
+          <speciesReference species="M_MAM03125c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03128c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03128c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR04770" sboTerm="SBO:0000176" id="MAR04770" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04770" sboTerm="SBO:0000176" id="R_MAR04770" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -269084,7 +269088,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04770">
+            <rdf:Description rdf:about="#R_MAR04770">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/RE3052C"/>
@@ -269094,14 +269098,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01604c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="6" constant="true"/>
+          <speciesReference species="M_MAM01604c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="6" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01606c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01606c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR04771" sboTerm="SBO:0000176" id="MAR04771" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04771" sboTerm="SBO:0000176" id="R_MAR04771" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -269109,7 +269113,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04771">
+            <rdf:Description rdf:about="#R_MAR04771">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R03166"/>
@@ -269121,14 +269125,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03127c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03127c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02151c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02151c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR04772" sboTerm="SBO:0000176" id="MAR04772" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04772" sboTerm="SBO:0000176" id="R_MAR04772" name="Uroporphyrinogen I carboxy-lyase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -269137,7 +269141,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04772">
+            <rdf:Description rdf:about="#R_MAR04772">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.1.1.37"/>
@@ -269153,18 +269157,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="4" constant="true"/>
-          <speciesReference species="MAM03127c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM03127c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01596c" stoichiometry="4" constant="true"/>
-          <speciesReference species="MAM01605c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01596c" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM01605c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Urod"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04773" sboTerm="SBO:0000176" id="MAR04773" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04773" sboTerm="SBO:0000176" id="R_MAR04773" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -269173,7 +269177,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04773">
+            <rdf:Description rdf:about="#R_MAR04773">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR103784"/>
@@ -269184,14 +269188,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01603c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="6" constant="true"/>
+          <speciesReference species="M_MAM01603c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="6" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01605c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01605c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR06395" sboTerm="SBO:0000176" id="MAR06395" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06395" sboTerm="SBO:0000176" id="R_MAR06395" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -269199,7 +269203,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06395">
+            <rdf:Description rdf:about="#R_MAR06395">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.-.-.-"/>
@@ -269212,19 +269216,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01368e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01822e" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01368e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01822e" stoichiometry="2" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01655e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01821e" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02039e" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01655e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01821e" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="2" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG1275"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08634" sboTerm="SBO:0000176" id="MAR08634" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08634" sboTerm="SBO:0000176" id="R_MAR08634" name="Bilirubin:NADP+ oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -269232,7 +269236,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08634">
+            <rdf:Description rdf:about="#R_MAR08634">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.5.1.30"/>
@@ -269247,19 +269251,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01399c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01399c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01396c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01396c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG9471"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR09717" sboTerm="SBO:0000176" id="MAR09717" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09717" sboTerm="SBO:0000176" id="R_MAR09717" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -269267,7 +269271,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09717">
+            <rdf:Description rdf:about="#R_MAR09717">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R03684"/>
@@ -269279,14 +269283,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01957c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02049c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01957c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02049c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02050c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02050c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR06630" sboTerm="SBO:0000176" id="MAR06630" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06630" sboTerm="SBO:0000176" id="R_MAR06630" name="retinol: NADP+ oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -269294,7 +269298,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06630">
+            <rdf:Description rdf:about="#R_MAR06630">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.300"/>
@@ -269307,13 +269311,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02834c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02834c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02832c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02832c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -269325,7 +269329,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06631" sboTerm="SBO:0000176" id="MAR06631" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06631" sboTerm="SBO:0000176" id="R_MAR06631" name="retinol:NAD+ oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -269333,7 +269337,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06631">
+            <rdf:Description rdf:about="#R_MAR06631">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.1"/>
@@ -269347,13 +269351,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02552c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02834c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02834c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02832c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02832c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -269365,7 +269369,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06632" sboTerm="SBO:0000176" id="MAR06632" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06632" sboTerm="SBO:0000176" id="R_MAR06632" name="retinol: NADP+ oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -269373,7 +269377,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06632">
+            <rdf:Description rdf:about="#R_MAR06632">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.300"/>
@@ -269386,13 +269390,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02554r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02834r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02834r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02832r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02832r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -269404,7 +269408,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06633" sboTerm="SBO:0000176" id="MAR06633" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06633" sboTerm="SBO:0000176" id="R_MAR06633" name="retinol:NAD+ oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -269412,7 +269416,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06633">
+            <rdf:Description rdf:about="#R_MAR06633">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.1"/>
@@ -269426,13 +269430,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02552r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02834r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02834r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02832r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02832r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -269444,7 +269448,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06635" sboTerm="SBO:0000176" id="MAR06635" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06635" sboTerm="SBO:0000176" id="R_MAR06635" name="phosphatidylcholine:retinol O-acyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -269452,7 +269456,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06635">
+            <rdf:Description rdf:about="#R_MAR06635">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.135"/>
@@ -269466,12 +269470,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02684c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02834c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02684c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02834c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00535c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02838c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00535c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02838c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -269480,7 +269484,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06636" sboTerm="SBO:0000176" id="MAR06636" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06636" sboTerm="SBO:0000176" id="R_MAR06636" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -269488,7 +269492,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06636">
+            <rdf:Description rdf:about="#R_MAR06636">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.1"/>
@@ -269500,16 +269504,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02838c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02838c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02834c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM10005c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02834c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM10005c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR06637" sboTerm="SBO:0000176" id="MAR06637" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06637" sboTerm="SBO:0000176" id="R_MAR06637" name="all-trans-retinyl ester acylhydrolase, 11-cis-retinol forming" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -269517,7 +269521,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06637">
+            <rdf:Description rdf:about="#R_MAR06637">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.64"/>
@@ -269530,19 +269534,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02838c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02838c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00291c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM10005c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00291c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM10005c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="ninaB"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06638" sboTerm="SBO:0000176" id="MAR06638" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06638" sboTerm="SBO:0000176" id="R_MAR06638" name="11-cis-retinol:NAD+ oxidoreductase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -269550,7 +269554,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06638">
+            <rdf:Description rdf:about="#R_MAR06638">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.105"/>
@@ -269565,13 +269569,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00290c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00290c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00291c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00291c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -269583,7 +269587,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06639" sboTerm="SBO:0000176" id="MAR06639" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06639" sboTerm="SBO:0000176" id="R_MAR06639" name="phosphatidylcholine:retinol O-acyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -269591,7 +269595,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06639">
+            <rdf:Description rdf:about="#R_MAR06639">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.135"/>
@@ -269605,12 +269609,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00291c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02684c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00291c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02684c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00535c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02838c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00535c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02838c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -269619,7 +269623,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06640" sboTerm="SBO:0000176" id="MAR06640" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06640" sboTerm="SBO:0000176" id="R_MAR06640" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -269628,7 +269632,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06640">
+            <rdf:Description rdf:about="#R_MAR06640">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.-"/>
@@ -269640,17 +269644,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02834c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02834c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01340c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01340c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Rpp14a"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06644" sboTerm="SBO:0000176" id="MAR06644" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06644" sboTerm="SBO:0000176" id="R_MAR06644" name="9-cis-retinol:NAD+ oxidoreductase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -269658,7 +269662,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06644">
+            <rdf:Description rdf:about="#R_MAR06644">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.105"/>
@@ -269672,13 +269676,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01230c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01230c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01232c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01232c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -269690,7 +269694,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06646" sboTerm="SBO:0000176" id="MAR06646" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06646" sboTerm="SBO:0000176" id="R_MAR06646" name="retinal:NAD+ oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -269698,7 +269702,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06646">
+            <rdf:Description rdf:about="#R_MAR06646">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.2.1.36"/>
@@ -269713,20 +269717,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02832c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02832c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02553c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02833c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02553c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02833c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG31075"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06647" sboTerm="SBO:0000176" id="MAR06647" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06647" sboTerm="SBO:0000176" id="R_MAR06647" name="retinal:NAD+ oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -269734,7 +269738,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06647">
+            <rdf:Description rdf:about="#R_MAR06647">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.2.1.36"/>
@@ -269749,20 +269753,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02832r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02832r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039r" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02553r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02833r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02553r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02833r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG31075"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06652" sboTerm="SBO:0000176" id="MAR06652" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06652" sboTerm="SBO:0000176" id="R_MAR06652" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -269771,7 +269775,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06652">
+            <rdf:Description rdf:about="#R_MAR06652">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.2.1.36"/>
@@ -269785,20 +269789,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01230r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01230r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01231r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039r" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02553r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01231r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02553r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG31075"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06657" sboTerm="SBO:0000176" id="MAR06657" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06657" sboTerm="SBO:0000176" id="R_MAR06657" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -269807,7 +269811,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06657">
+            <rdf:Description rdf:about="#R_MAR06657">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.14.1"/>
@@ -269820,15 +269824,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02833c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02833c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00427c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00427c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -269838,7 +269842,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06658" sboTerm="SBO:0000176" id="MAR06658" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06658" sboTerm="SBO:0000176" id="R_MAR06658" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -269847,7 +269851,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06658">
+            <rdf:Description rdf:about="#R_MAR06658">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.14.1"/>
@@ -269860,15 +269864,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02833r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02833r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00427r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00427r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -269878,7 +269882,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06659" sboTerm="SBO:0000176" id="MAR06659" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06659" sboTerm="SBO:0000176" id="R_MAR06659" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -269887,7 +269891,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06659">
+            <rdf:Description rdf:about="#R_MAR06659">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR103714"/>
@@ -269898,13 +269902,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01231c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01231c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02833c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02833c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR06660" sboTerm="SBO:0000176" id="MAR06660" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06660" sboTerm="SBO:0000176" id="R_MAR06660" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -269913,7 +269917,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06660">
+            <rdf:Description rdf:about="#R_MAR06660">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR103714"/>
@@ -269924,13 +269928,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01231r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01231r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02833r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02833r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR06661" sboTerm="SBO:0000176" id="MAR06661" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06661" sboTerm="SBO:0000176" id="R_MAR06661" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -269939,7 +269943,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06661">
+            <rdf:Description rdf:about="#R_MAR06661">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/RAI3"/>
@@ -269949,16 +269953,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00350c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00350c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02833c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02833c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="GstS1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06662" sboTerm="SBO:0000176" id="MAR06662" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06662" sboTerm="SBO:0000176" id="R_MAR06662" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -269967,7 +269971,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06662">
+            <rdf:Description rdf:about="#R_MAR06662">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR103424"/>
@@ -269978,13 +269982,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00350r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00350r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02833r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02833r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR06663" sboTerm="SBO:0000176" id="MAR06663" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06663" sboTerm="SBO:0000176" id="R_MAR06663" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -269993,7 +269997,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06663">
+            <rdf:Description rdf:about="#R_MAR06663">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/5.-.-.-"/>
@@ -270005,13 +270009,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01224c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01224c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01231c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01231c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR06666" sboTerm="SBO:0000176" id="MAR06666" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06666" sboTerm="SBO:0000176" id="R_MAR06666" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -270020,7 +270024,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06666">
+            <rdf:Description rdf:about="#R_MAR06666">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.17"/>
@@ -270031,12 +270035,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01231c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03109c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01231c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03109c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01233c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01233c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -270056,7 +270060,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06667" sboTerm="SBO:0000176" id="MAR06667" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06667" sboTerm="SBO:0000176" id="R_MAR06667" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -270065,7 +270069,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06667">
+            <rdf:Description rdf:about="#R_MAR06667">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.17"/>
@@ -270077,12 +270081,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01231r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03109r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01231r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03109r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01233r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01233r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -270102,7 +270106,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06668" sboTerm="SBO:0000176" id="MAR06668" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06668" sboTerm="SBO:0000176" id="R_MAR06668" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -270111,7 +270115,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06668">
+            <rdf:Description rdf:about="#R_MAR06668">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.17"/>
@@ -270122,12 +270126,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01029c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03109c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01029c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03109c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01030c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01030c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -270147,7 +270151,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06669" sboTerm="SBO:0000176" id="MAR06669" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06669" sboTerm="SBO:0000176" id="R_MAR06669" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -270156,7 +270160,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06669">
+            <rdf:Description rdf:about="#R_MAR06669">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.17"/>
@@ -270168,12 +270172,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01029r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03109r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01029r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03109r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01030r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01030r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -270193,7 +270197,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06670" sboTerm="SBO:0000176" id="MAR06670" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06670" sboTerm="SBO:0000176" id="R_MAR06670" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -270202,7 +270206,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06670">
+            <rdf:Description rdf:about="#R_MAR06670">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.-"/>
@@ -270214,13 +270218,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01029c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01029c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01229c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01229c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -270245,7 +270249,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06671" sboTerm="SBO:0000176" id="MAR06671" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06671" sboTerm="SBO:0000176" id="R_MAR06671" name="Palmitoyl-CoA:retinol O-acyltransferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -270253,7 +270257,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06671">
+            <rdf:Description rdf:about="#R_MAR06671">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.75"/>
@@ -270268,12 +270272,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00291c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02678c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00291c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02678c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00292c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00292c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -270282,7 +270286,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06672" sboTerm="SBO:0000176" id="MAR06672" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06672" sboTerm="SBO:0000176" id="R_MAR06672" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -270291,7 +270295,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06672">
+            <rdf:Description rdf:about="#R_MAR06672">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR103713"/>
@@ -270302,13 +270306,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00349c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00349c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02832c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02832c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR06673" sboTerm="SBO:0000176" id="MAR06673" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06673" sboTerm="SBO:0000176" id="R_MAR06673" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -270317,7 +270321,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06673">
+            <rdf:Description rdf:about="#R_MAR06673">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR103713"/>
@@ -270328,13 +270332,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00349r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00349r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02832r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02832r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR06674" sboTerm="SBO:0000176" id="MAR06674" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06674" sboTerm="SBO:0000176" id="R_MAR06674" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -270343,7 +270347,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06674">
+            <rdf:Description rdf:about="#R_MAR06674">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.2.1.36"/>
@@ -270355,20 +270359,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00349r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00349r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039r" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02553r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02833r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02553r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02833r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG31075"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06675" sboTerm="SBO:0000176" id="MAR06675" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06675" sboTerm="SBO:0000176" id="R_MAR06675" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -270377,7 +270381,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06675">
+            <rdf:Description rdf:about="#R_MAR06675">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.2.1.36"/>
@@ -270389,20 +270393,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00349c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00349c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00350c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02553c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00350c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02553c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG31075"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06676" sboTerm="SBO:0000176" id="MAR06676" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06676" sboTerm="SBO:0000176" id="R_MAR06676" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -270411,7 +270415,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06676">
+            <rdf:Description rdf:about="#R_MAR06676">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.2.1.36"/>
@@ -270423,20 +270427,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00349r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00349r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00350r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039r" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02553r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00350r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02553r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG31075"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06679" sboTerm="SBO:0000176" id="MAR06679" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06679" sboTerm="SBO:0000176" id="R_MAR06679" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -270445,7 +270449,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06679">
+            <rdf:Description rdf:about="#R_MAR06679">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.17"/>
@@ -270456,12 +270460,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00350c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03109c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00350c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03109c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00353c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00353c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -270481,7 +270485,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06680" sboTerm="SBO:0000176" id="MAR06680" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06680" sboTerm="SBO:0000176" id="R_MAR06680" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -270490,7 +270494,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06680">
+            <rdf:Description rdf:about="#R_MAR06680">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.17"/>
@@ -270500,12 +270504,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00350r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03109r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00350r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03109r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00352r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00352r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -270525,7 +270529,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06685" sboTerm="SBO:0000176" id="MAR06685" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06685" sboTerm="SBO:0000176" id="R_MAR06685" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -270534,7 +270538,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06685">
+            <rdf:Description rdf:about="#R_MAR06685">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.17"/>
@@ -270544,12 +270548,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01057c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03109c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01057c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03109c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02826c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02826c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -270569,7 +270573,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06686" sboTerm="SBO:0000176" id="MAR06686" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06686" sboTerm="SBO:0000176" id="R_MAR06686" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -270578,7 +270582,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06686">
+            <rdf:Description rdf:about="#R_MAR06686">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.17"/>
@@ -270591,12 +270595,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01057r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03109r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01057r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03109r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02826r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02826r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -270616,7 +270620,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06690" sboTerm="SBO:0000176" id="MAR06690" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06690" sboTerm="SBO:0000176" id="R_MAR06690" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -270624,7 +270628,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06690">
+            <rdf:Description rdf:about="#R_MAR06690">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_6690"/>
@@ -270634,16 +270638,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01346c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01346c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02685c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02832c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02685c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02832c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR06691" sboTerm="SBO:0000176" id="MAR06691" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06691" sboTerm="SBO:0000176" id="R_MAR06691" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -270651,7 +270655,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06691">
+            <rdf:Description rdf:about="#R_MAR06691">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_6691"/>
@@ -270661,16 +270665,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01248c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01248c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01346c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02832c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01346c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02832c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR06692" sboTerm="SBO:0000176" id="MAR06692" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06692" sboTerm="SBO:0000176" id="R_MAR06692" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -270678,7 +270682,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06692">
+            <rdf:Description rdf:about="#R_MAR06692">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_6692"/>
@@ -270688,15 +270692,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01248c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01802c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01248c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01802c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01247c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01803c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01247c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01803c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR06693" sboTerm="SBO:0000176" id="MAR06693" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06693" sboTerm="SBO:0000176" id="R_MAR06693" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -270704,7 +270708,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06693">
+            <rdf:Description rdf:about="#R_MAR06693">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_6693"/>
@@ -270714,16 +270718,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01247c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01247c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02624c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02729c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02624c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02729c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR06694" sboTerm="SBO:0000176" id="MAR06694" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06694" sboTerm="SBO:0000176" id="R_MAR06694" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -270732,7 +270736,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06694">
+            <rdf:Description rdf:about="#R_MAR06694">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR103621"/>
@@ -270743,13 +270747,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02624c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02624c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02177c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02177c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR06695" sboTerm="SBO:0000176" id="MAR06695" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06695" sboTerm="SBO:0000176" id="R_MAR06695" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -270758,7 +270762,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06695">
+            <rdf:Description rdf:about="#R_MAR06695">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/RE2203C"/>
@@ -270771,13 +270775,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02624c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02624c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02176c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02176c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR06697" sboTerm="SBO:0000176" id="MAR06697" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06697" sboTerm="SBO:0000176" id="R_MAR06697" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -270786,7 +270790,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06697">
+            <rdf:Description rdf:about="#R_MAR06697">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/RE2202C"/>
@@ -270799,13 +270803,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02624c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02624c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02179c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02179c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR06699" sboTerm="SBO:0000176" id="MAR06699" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06699" sboTerm="SBO:0000176" id="R_MAR06699" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -270814,7 +270818,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06699">
+            <rdf:Description rdf:about="#R_MAR06699">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR103624"/>
@@ -270825,13 +270829,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02624c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02624c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02178c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02178c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR06704" sboTerm="SBO:0000176" id="MAR06704" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06704" sboTerm="SBO:0000176" id="R_MAR06704" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -270839,7 +270843,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06704">
+            <rdf:Description rdf:about="#R_MAR06704">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.17"/>
@@ -270850,13 +270854,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00993c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03109c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00993c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03109c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02824c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02824c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -270876,7 +270880,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06705" sboTerm="SBO:0000176" id="MAR06705" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06705" sboTerm="SBO:0000176" id="R_MAR06705" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -270884,7 +270888,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06705">
+            <rdf:Description rdf:about="#R_MAR06705">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.17"/>
@@ -270895,13 +270899,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00993r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03109r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00993r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03109r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02824r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02824r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -270921,7 +270925,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08697" sboTerm="SBO:0000176" id="MAR08697" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08697" sboTerm="SBO:0000176" id="R_MAR08697" name="beta-carotene:oxygen 15,15&apos;-oxidoreductase (bond-cleaving)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -270929,7 +270933,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08697">
+            <rdf:Description rdf:about="#R_MAR08697">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.6.14"/>
@@ -270943,17 +270947,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01385c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01385c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02832c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02832c" stoichiometry="2" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="ninaB"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08698" sboTerm="SBO:0000176" id="MAR08698" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08698" sboTerm="SBO:0000176" id="R_MAR08698" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -270961,7 +270965,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08698">
+            <rdf:Description rdf:about="#R_MAR08698">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/RADH2"/>
@@ -270973,17 +270977,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02833c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02833c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02832c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02832c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08699" sboTerm="SBO:0000176" id="MAR08699" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08699" sboTerm="SBO:0000176" id="R_MAR08699" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -270991,7 +270995,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08699">
+            <rdf:Description rdf:about="#R_MAR08699">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/RADH4"/>
@@ -271003,17 +271007,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00349c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00349c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00350c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00350c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08700" sboTerm="SBO:0000176" id="MAR08700" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08700" sboTerm="SBO:0000176" id="R_MAR08700" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -271021,7 +271025,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08700">
+            <rdf:Description rdf:about="#R_MAR08700">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/RAHY"/>
@@ -271034,21 +271038,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02833c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02833c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01006c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01006c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Cyp18a1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08702" sboTerm="SBO:0000176" id="MAR08702" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08702" sboTerm="SBO:0000176" id="R_MAR08702" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -271056,7 +271060,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08702">
+            <rdf:Description rdf:about="#R_MAR08702">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/RAI2"/>
@@ -271068,13 +271072,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01230c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01230c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02832c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02832c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08703" sboTerm="SBO:0000176" id="MAR08703" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08703" sboTerm="SBO:0000176" id="R_MAR08703" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -271082,7 +271086,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08703">
+            <rdf:Description rdf:about="#R_MAR08703">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ORETNF"/>
@@ -271094,14 +271098,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02833c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02833c" stoichiometry="2" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01026c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01026c" stoichiometry="2" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08704" sboTerm="SBO:0000176" id="MAR08704" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08704" sboTerm="SBO:0000176" id="R_MAR08704" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -271109,7 +271113,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08704">
+            <rdf:Description rdf:about="#R_MAR08704">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/RAI4"/>
@@ -271121,13 +271125,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00348c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01026c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01026c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08706" sboTerm="SBO:0000176" id="MAR08706" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08706" sboTerm="SBO:0000176" id="R_MAR08706" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -271135,7 +271139,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08706">
+            <rdf:Description rdf:about="#R_MAR08706">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ORETNF2"/>
@@ -271147,14 +271151,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00350c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00350c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00348c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM00348c" stoichiometry="2" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08709" sboTerm="SBO:0000176" id="MAR08709" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08709" sboTerm="SBO:0000176" id="R_MAR08709" name="11-cis-retinol: NADP+ oxidoreductase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -271162,7 +271166,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08709">
+            <rdf:Description rdf:about="#R_MAR08709">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.105"/>
@@ -271178,13 +271182,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00290c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00290c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00291c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00291c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -271196,7 +271200,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08711" sboTerm="SBO:0000176" id="MAR08711" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08711" sboTerm="SBO:0000176" id="R_MAR08711" name="all-trans-Retinol 11-cis-trans-isomerase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -271204,7 +271208,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08711">
+            <rdf:Description rdf:about="#R_MAR08711">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/RETI1"/>
@@ -271217,13 +271221,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00291c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00291c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02834c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02834c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08712" sboTerm="SBO:0000176" id="MAR08712" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08712" sboTerm="SBO:0000176" id="R_MAR08712" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -271231,7 +271235,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08712">
+            <rdf:Description rdf:about="#R_MAR08712">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/RETNCOA"/>
@@ -271243,17 +271247,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02833c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02833c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01334c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02835c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02835c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08713" sboTerm="SBO:0000176" id="MAR08713" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08713" sboTerm="SBO:0000176" id="R_MAR08713" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -271261,7 +271265,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08713">
+            <rdf:Description rdf:about="#R_MAR08713">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.17"/>
@@ -271275,12 +271279,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02833r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03109r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02833r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03109r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02836r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02836r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -271296,7 +271300,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08717" sboTerm="SBO:0000176" id="MAR08717" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08717" sboTerm="SBO:0000176" id="R_MAR08717" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -271304,7 +271308,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08717">
+            <rdf:Description rdf:about="#R_MAR08717">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.17"/>
@@ -271317,12 +271321,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00350r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03109r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00350r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03109r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00353r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00353r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -271338,7 +271342,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06506" sboTerm="SBO:0000176" id="MAR06506" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06506" sboTerm="SBO:0000176" id="R_MAR06506" name="ATP:riboflavin 5&apos;-phosphotransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -271347,7 +271351,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06506">
+            <rdf:Description rdf:about="#R_MAR06506">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.1.26"/>
@@ -271363,19 +271367,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02842c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02842c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01828c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01828c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG2846"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06507" sboTerm="SBO:0000176" id="MAR06507" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06507" sboTerm="SBO:0000176" id="R_MAR06507" name="riboflavin-5-phosphate phosphohydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -271384,7 +271388,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06507">
+            <rdf:Description rdf:about="#R_MAR06507">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.3.2"/>
@@ -271399,15 +271403,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01828c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01828c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02842c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02842c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR06508" sboTerm="SBO:0000176" id="MAR06508" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06508" sboTerm="SBO:0000176" id="R_MAR06508" name="ATP:FMN adenylyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -271416,7 +271420,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06508">
+            <rdf:Description rdf:about="#R_MAR06508">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.7.2"/>
@@ -271432,13 +271436,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01828c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01828c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01802c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01802c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -271447,7 +271451,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06510" sboTerm="SBO:0000176" id="MAR06510" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06510" sboTerm="SBO:0000176" id="R_MAR06510" name="FADH2:NAD+ oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -271456,7 +271460,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06510">
+            <rdf:Description rdf:about="#R_MAR06510">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.5.1.38"/>
@@ -271469,16 +271473,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01802c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01802c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01803c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01803c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR06511" sboTerm="SBO:0000176" id="MAR06511" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06511" sboTerm="SBO:0000176" id="R_MAR06511" name="FADH2:NADP+ oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -271487,7 +271491,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06511">
+            <rdf:Description rdf:about="#R_MAR06511">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.5.1.30"/>
@@ -271500,19 +271504,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01802c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01802c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01803c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01803c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG9471"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04537" sboTerm="SBO:0000176" id="MAR04537" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04537" sboTerm="SBO:0000176" id="R_MAR04537" name="L-tryptophan,tetrahydrobiopterin:oxygen oxidoreductase(5-hydroxylating)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -271520,7 +271524,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04537">
+            <rdf:Description rdf:about="#R_MAR04537">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.16.4"/>
@@ -271533,19 +271537,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02978c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03089c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02978c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03089c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00965c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01107c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00965c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01107c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Trh"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04545" sboTerm="SBO:0000176" id="MAR04545" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04545" sboTerm="SBO:0000176" id="R_MAR04545" name="5-Hydroxy-L-tryptophan decarboxy-lyase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -271554,7 +271558,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04545">
+            <rdf:Description rdf:about="#R_MAR04545">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.1.1.28"/>
@@ -271571,18 +271575,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01107c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01107c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01596c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02897c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01596c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02897c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Ddc"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04549" sboTerm="SBO:0000176" id="MAR04549" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04549" sboTerm="SBO:0000176" id="R_MAR04549" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -271590,7 +271594,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04549">
+            <rdf:Description rdf:about="#R_MAR04549">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.8.2.-"/>
@@ -271601,12 +271605,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01162c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01162c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01161c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02949c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01161c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02949c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -271622,7 +271626,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04551" sboTerm="SBO:0000176" id="MAR04551" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04551" sboTerm="SBO:0000176" id="R_MAR04551" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -271631,7 +271635,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04551">
+            <rdf:Description rdf:about="#R_MAR04551">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR103674"/>
@@ -271642,17 +271646,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01839c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02041c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01839c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02041c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01596c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01833c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02520c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01596c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01833c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02520c" stoichiometry="2" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR04552" sboTerm="SBO:0000176" id="MAR04552" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04552" sboTerm="SBO:0000176" id="R_MAR04552" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -271661,7 +271665,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#meta_MAR04552">
+            <rdf:Description rdf:about="#meta_R_MAR04552">
               <bqbiol:is>
                 <rdf:Bag/>
               </bqbiol:is>
@@ -271669,14 +271673,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02147c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02460c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02147c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02460c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02459c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02459c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR04553" sboTerm="SBO:0000176" id="MAR04553" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04553" sboTerm="SBO:0000176" id="R_MAR04553" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -271685,7 +271689,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#meta_MAR04553">
+            <rdf:Description rdf:about="#meta_R_MAR04553">
               <bqbiol:is>
                 <rdf:Bag/>
               </bqbiol:is>
@@ -271693,15 +271697,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01625c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01625c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02147c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02459c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02147c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02459c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR04554" sboTerm="SBO:0000176" id="MAR04554" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04554" sboTerm="SBO:0000176" id="R_MAR04554" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -271710,7 +271714,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04554">
+            <rdf:Description rdf:about="#R_MAR04554">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR103616"/>
@@ -271721,15 +271725,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01160c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01160c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01831c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02897c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01831c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02897c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR04558" sboTerm="SBO:0000176" id="MAR04558" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04558" sboTerm="SBO:0000176" id="R_MAR04558" name="5-Hydroxytryptamine:oxygen oxidoreductase(deaminating)(flavin-containing)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -271737,7 +271741,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04558">
+            <rdf:Description rdf:about="#R_MAR04558">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.4.3.4"/>
@@ -271751,21 +271755,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02897c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02897c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01102c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02041c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02578c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01102c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02578c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="shps"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04559" sboTerm="SBO:0000176" id="MAR04559" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04559" sboTerm="SBO:0000176" id="R_MAR04559" name="5-Hydroxyindoleacetaldehyde:NAD+ oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -271774,7 +271778,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04559">
+            <rdf:Description rdf:about="#R_MAR04559">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.2.1.3"/>
@@ -271788,14 +271792,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01102c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01102c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01103c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02553c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01103c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02553c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -271803,7 +271807,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04560" sboTerm="SBO:0000176" id="MAR04560" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04560" sboTerm="SBO:0000176" id="R_MAR04560" name="5-hydroxyindoleacetaldehyde:oxygen oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -271812,7 +271816,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04560">
+            <rdf:Description rdf:about="#R_MAR04560">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.2.3.1"/>
@@ -271827,20 +271831,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01102c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01102c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01103c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02041c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01103c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="ry"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04561" sboTerm="SBO:0000176" id="MAR04561" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04561" sboTerm="SBO:0000176" id="R_MAR04561" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -271849,7 +271853,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04561">
+            <rdf:Description rdf:about="#R_MAR04561">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.1"/>
@@ -271861,13 +271865,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01102c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01102c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01110c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01110c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -271876,7 +271880,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04204" sboTerm="SBO:0000176" id="MAR04204" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04204" sboTerm="SBO:0000176" id="R_MAR04204" name="ATP:thiamine diphosphotransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -271884,7 +271888,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04204">
+            <rdf:Description rdf:about="#R_MAR04204">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.6.2"/>
@@ -271899,19 +271903,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02982c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02982c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01334c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02984c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02984c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG14721"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04206" sboTerm="SBO:0000176" id="MAR04206" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04206" sboTerm="SBO:0000176" id="R_MAR04206" name="ATP:thiamine-diphosphate phosphotransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -271919,7 +271923,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04206">
+            <rdf:Description rdf:about="#R_MAR04206">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.6.2"/>
@@ -271934,18 +271938,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02984c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02984c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02985c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02985c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG14721"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04208" sboTerm="SBO:0000176" id="MAR04208" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04208" sboTerm="SBO:0000176" id="R_MAR04208" name="Thiamin diphosphate phosphohydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -271953,7 +271957,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04208">
+            <rdf:Description rdf:about="#R_MAR04208">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.6.1.15"/>
@@ -271966,19 +271970,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02984c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02984c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02983c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02983c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG10581"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08744" sboTerm="SBO:0000176" id="MAR08744" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08744" sboTerm="SBO:0000176" id="R_MAR08744" name="Thiamin diphosphate phosphohydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -271986,7 +271990,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08744">
+            <rdf:Description rdf:about="#R_MAR08744">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/TDPm"/>
@@ -271999,19 +272003,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02984m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02984m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02983m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02983m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG10581"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08746" sboTerm="SBO:0000176" id="MAR08746" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08746" sboTerm="SBO:0000176" id="R_MAR08746" name="pyruvate:thiamin diphosphate acetaldehydetransferase (decarboxylating)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -272019,7 +272023,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08746">
+            <rdf:Description rdf:about="#R_MAR08746">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.2.4.1"/>
@@ -272032,13 +272036,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02819c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02984c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02819c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02984c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00561c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01596c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00561c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01596c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:and>
@@ -272047,7 +272051,7 @@
           </fbc:and>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08748" sboTerm="SBO:0000176" id="MAR08748" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08748" sboTerm="SBO:0000176" id="R_MAR08748" name="thiamin monophosphate phosphohydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -272055,7 +272059,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08748">
+            <rdf:Description rdf:about="#R_MAR08748">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/THMP"/>
@@ -272068,15 +272072,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02983c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02983c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02982c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02982c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08613" sboTerm="SBO:0000176" id="MAR08613" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08613" sboTerm="SBO:0000176" id="R_MAR08613" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -272084,7 +272088,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08613">
+            <rdf:Description rdf:about="#R_MAR08613">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CBL2tm"/>
@@ -272099,17 +272103,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01361c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02553c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01361c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02553c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01599c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02552c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01599c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02552c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR04064" sboTerm="SBO:0000176" id="MAR04064" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04064" sboTerm="SBO:0000176" id="R_MAR04064" name="pyridoxal-5&apos;-phosphate phosphohydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -272118,7 +272122,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04064">
+            <rdf:Description rdf:about="#R_MAR04064">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.3.74"/>
@@ -272132,12 +272136,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02814c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02814c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02813c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02813c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -272147,7 +272151,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04065" sboTerm="SBO:0000176" id="MAR04065" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04065" sboTerm="SBO:0000176" id="R_MAR04065" name="ATP:pyridoxal 5&apos;-phosphotransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -272156,7 +272160,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04065">
+            <rdf:Description rdf:about="#R_MAR04065">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.1.35"/>
@@ -272170,19 +272174,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02813c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02813c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02814c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02814c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Pdxk"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04066" sboTerm="SBO:0000176" id="MAR04066" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04066" sboTerm="SBO:0000176" id="R_MAR04066" name="ATP:pyridoxine 5&apos;-phosphotransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -272191,7 +272195,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04066">
+            <rdf:Description rdf:about="#R_MAR04066">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.1.35"/>
@@ -272205,19 +272209,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02817c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02817c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02818c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02818c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Pdxk"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04067" sboTerm="SBO:0000176" id="MAR04067" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04067" sboTerm="SBO:0000176" id="R_MAR04067" name="pyridoxine 5&apos;-phosphate:oxygen oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -272226,7 +272230,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04067">
+            <rdf:Description rdf:about="#R_MAR04067">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.4.3.5"/>
@@ -272240,18 +272244,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02818c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02818c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02041c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02814c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02814c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="sgll"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04068" sboTerm="SBO:0000176" id="MAR04068" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04068" sboTerm="SBO:0000176" id="R_MAR04068" name="ATP:pyridoxal 5&apos;-phosphotransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -272260,7 +272264,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04068">
+            <rdf:Description rdf:about="#R_MAR04068">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.1.35"/>
@@ -272274,19 +272278,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02815c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02815c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02816c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02816c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Pdxk"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04069" sboTerm="SBO:0000176" id="MAR04069" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04069" sboTerm="SBO:0000176" id="R_MAR04069" name="pyridoxamine-5&apos;-phosphate:oxygen oxidoreductase (deaminating)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -272295,7 +272299,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04069">
+            <rdf:Description rdf:about="#R_MAR04069">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.4.3.5"/>
@@ -272309,21 +272313,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02816c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02816c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02041c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02578c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02814c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02578c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02814c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="sgll"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04070" sboTerm="SBO:0000176" id="MAR04070" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04070" sboTerm="SBO:0000176" id="R_MAR04070" name="pyridoxamine:oxygen oxidoreductase (deaminating)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -272332,7 +272336,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04070">
+            <rdf:Description rdf:about="#R_MAR04070">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.4.3.5"/>
@@ -272345,21 +272349,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02815c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02815c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02041c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02578c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02813c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02578c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02813c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="sgll"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04071" sboTerm="SBO:0000176" id="MAR04071" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04071" sboTerm="SBO:0000176" id="R_MAR04071" name="pyridoxine:oxygen oxidoreductase (deaminating)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -272368,7 +272372,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04071">
+            <rdf:Description rdf:about="#R_MAR04071">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.3.12"/>
@@ -272384,18 +272388,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02041c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02813c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02813c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02817c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02817c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="sgll"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08102" sboTerm="SBO:0000176" id="MAR08102" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08102" sboTerm="SBO:0000176" id="R_MAR08102" name="pyridoxal:oxygen 4-oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -272403,7 +272407,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08102">
+            <rdf:Description rdf:about="#R_MAR08102">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.2.3.1"/>
@@ -272418,19 +272422,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02813c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02813c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01033c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02041c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01033c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="ry"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08724" sboTerm="SBO:0000176" id="MAR08724" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08724" sboTerm="SBO:0000176" id="R_MAR08724" name="pyridoxamine-5&apos;-phosphate phosphohydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -272438,7 +272442,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08724">
+            <rdf:Description rdf:about="#R_MAR08724">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.3.74"/>
@@ -272452,12 +272456,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02816c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02816c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02815c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02815c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -272466,7 +272470,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08725" sboTerm="SBO:0000176" id="MAR08725" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08725" sboTerm="SBO:0000176" id="R_MAR08725" name="pyridoxine-5&apos;-phosphate phosphohydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -272474,7 +272478,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08725">
+            <rdf:Description rdf:about="#R_MAR08725">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.3.74"/>
@@ -272488,12 +272492,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02818c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02818c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02817c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02817c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -272502,7 +272506,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02114" sboTerm="SBO:0000176" id="MAR02114" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02114" sboTerm="SBO:0000176" id="R_MAR02114" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -272510,7 +272514,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02114">
+            <rdf:Description rdf:about="#R_MAR02114">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R03311"/>
@@ -272523,13 +272527,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02805c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02805c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03142c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03142c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR02115" sboTerm="SBO:0000176" id="MAR02115" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02115" sboTerm="SBO:0000176" id="R_MAR02115" name="calciol,NADPH-hemoprotein reductase:oxygen oxidoreductase (25-hydroxylating)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -272538,7 +272542,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02115">
+            <rdf:Description rdf:about="#R_MAR02115">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.13.159"/>
@@ -272551,21 +272555,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03142c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03142c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01415c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01415c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Cyp18a1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02117" sboTerm="SBO:0000176" id="MAR02117" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02117" sboTerm="SBO:0000176" id="R_MAR02117" name="calciol,NADPH-hemoprotein reductase:oxygen oxidoreductase (25-hydroxylating)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -272574,7 +272578,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02117">
+            <rdf:Description rdf:about="#R_MAR02117">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.13.-"/>
@@ -272586,15 +272590,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03142m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03142m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01415m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01415m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -272604,7 +272608,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02118" sboTerm="SBO:0000176" id="MAR02118" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02118" sboTerm="SBO:0000176" id="R_MAR02118" name="calcidiol,adrenodoxin:oxygen oxidoreductase (1-hydroxylating)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -272613,7 +272617,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02118">
+            <rdf:Description rdf:about="#R_MAR02118">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.13.13"/>
@@ -272627,15 +272631,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01415c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01415c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01417c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01417c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:and>
@@ -272648,7 +272652,7 @@
           </fbc:and>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02129" sboTerm="SBO:0000176" id="MAR02129" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02129" sboTerm="SBO:0000176" id="R_MAR02129" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -272657,7 +272661,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02129">
+            <rdf:Description rdf:about="#R_MAR02129">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.13.-"/>
@@ -272669,15 +272673,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01415c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01415c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00608c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00608c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -272687,7 +272691,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02130" sboTerm="SBO:0000176" id="MAR02130" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02130" sboTerm="SBO:0000176" id="R_MAR02130" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -272696,7 +272700,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02130">
+            <rdf:Description rdf:about="#R_MAR02130">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.13.-"/>
@@ -272708,15 +272712,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00608m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00608m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01415m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01415m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -272726,7 +272730,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02131" sboTerm="SBO:0000176" id="MAR02131" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02131" sboTerm="SBO:0000176" id="R_MAR02131" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -272735,7 +272739,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02131">
+            <rdf:Description rdf:about="#R_MAR02131">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.13.-"/>
@@ -272747,15 +272751,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00608c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00608c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00607c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00607c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -272765,7 +272769,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02132" sboTerm="SBO:0000176" id="MAR02132" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02132" sboTerm="SBO:0000176" id="R_MAR02132" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -272774,7 +272778,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02132">
+            <rdf:Description rdf:about="#R_MAR02132">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.13.-"/>
@@ -272786,15 +272790,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00608m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00608m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00607m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00607m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -272804,7 +272808,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02133" sboTerm="SBO:0000176" id="MAR02133" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02133" sboTerm="SBO:0000176" id="R_MAR02133" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -272813,7 +272817,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02133">
+            <rdf:Description rdf:about="#R_MAR02133">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.13.-"/>
@@ -272825,12 +272829,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00607c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00607c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00621c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02041c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00621c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -272840,7 +272844,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02134" sboTerm="SBO:0000176" id="MAR02134" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02134" sboTerm="SBO:0000176" id="R_MAR02134" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -272849,7 +272853,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02134">
+            <rdf:Description rdf:about="#R_MAR02134">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.13.-"/>
@@ -272861,12 +272865,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00607m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00607m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00621m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02041m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00621m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -272876,7 +272880,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02135" sboTerm="SBO:0000176" id="MAR02135" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02135" sboTerm="SBO:0000176" id="R_MAR02135" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -272885,7 +272889,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02135">
+            <rdf:Description rdf:about="#R_MAR02135">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.13.-"/>
@@ -272897,12 +272901,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00621c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00621c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00622c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02041c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00622c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -272912,7 +272916,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02136" sboTerm="SBO:0000176" id="MAR02136" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02136" sboTerm="SBO:0000176" id="R_MAR02136" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -272921,7 +272925,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02136">
+            <rdf:Description rdf:about="#R_MAR02136">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.13.-"/>
@@ -272933,12 +272937,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00621m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00621m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00622m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02041m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00622m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -272948,7 +272952,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02137" sboTerm="SBO:0000176" id="MAR02137" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02137" sboTerm="SBO:0000176" id="R_MAR02137" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -272957,7 +272961,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02137">
+            <rdf:Description rdf:about="#R_MAR02137">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.13.126"/>
@@ -272969,15 +272973,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01415c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01415c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00035c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00035c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -272986,7 +272990,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02138" sboTerm="SBO:0000176" id="MAR02138" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02138" sboTerm="SBO:0000176" id="R_MAR02138" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -272995,7 +272999,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02138">
+            <rdf:Description rdf:about="#R_MAR02138">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.13.126"/>
@@ -273006,15 +273010,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01415m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01415m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00035m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00035m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -273023,7 +273027,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02139" sboTerm="SBO:0000176" id="MAR02139" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02139" sboTerm="SBO:0000176" id="R_MAR02139" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -273031,7 +273035,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02139">
+            <rdf:Description rdf:about="#R_MAR02139">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.13.126"/>
@@ -273042,15 +273046,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00035c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00035c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01416c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01416c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -273059,7 +273063,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02140" sboTerm="SBO:0000176" id="MAR02140" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02140" sboTerm="SBO:0000176" id="R_MAR02140" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -273067,7 +273071,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02140">
+            <rdf:Description rdf:about="#R_MAR02140">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.13.126"/>
@@ -273078,15 +273082,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00035m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00035m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01416m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01416m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -273095,7 +273099,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02142" sboTerm="SBO:0000176" id="MAR02142" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02142" sboTerm="SBO:0000176" id="R_MAR02142" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -273103,7 +273107,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02142">
+            <rdf:Description rdf:about="#R_MAR02142">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.13.-"/>
@@ -273114,15 +273118,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01416c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01416c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00612c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00612c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -273132,7 +273136,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02143" sboTerm="SBO:0000176" id="MAR02143" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02143" sboTerm="SBO:0000176" id="R_MAR02143" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -273140,7 +273144,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02143">
+            <rdf:Description rdf:about="#R_MAR02143">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.13.-"/>
@@ -273151,15 +273155,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01416m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01416m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00612m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02554m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00612m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02554m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -273169,7 +273173,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02144" sboTerm="SBO:0000176" id="MAR02144" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02144" sboTerm="SBO:0000176" id="R_MAR02144" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -273178,7 +273182,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02144">
+            <rdf:Description rdf:about="#R_MAR02144">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.13.-"/>
@@ -273190,15 +273194,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00612c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00612c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00611c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00611c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -273208,7 +273212,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02145" sboTerm="SBO:0000176" id="MAR02145" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02145" sboTerm="SBO:0000176" id="R_MAR02145" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -273217,7 +273221,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02145">
+            <rdf:Description rdf:about="#R_MAR02145">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.13.-"/>
@@ -273229,15 +273233,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00612m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00612m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00611m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00611m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -273247,7 +273251,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07996" sboTerm="SBO:0000176" id="MAR07996" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07996" sboTerm="SBO:0000176" id="R_MAR07996" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -273255,7 +273259,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07996">
+            <rdf:Description rdf:about="#R_MAR07996">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.13.15"/>
@@ -273268,15 +273272,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03141m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03141m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00620m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00620m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -273285,7 +273289,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07999" sboTerm="SBO:0000176" id="MAR07999" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07999" sboTerm="SBO:0000176" id="R_MAR07999" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -273293,7 +273297,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07999">
+            <rdf:Description rdf:about="#R_MAR07999">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.13.126"/>
@@ -273305,15 +273309,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00620m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00620m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00613m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00613m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -273322,7 +273326,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08003" sboTerm="SBO:0000176" id="MAR08003" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08003" sboTerm="SBO:0000176" id="R_MAR08003" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -273330,7 +273334,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08003">
+            <rdf:Description rdf:about="#R_MAR08003">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/1a_24_25VITD2Hm"/>
@@ -273341,18 +273345,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00613m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00613m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00518m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00518m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08004" sboTerm="SBO:0000176" id="MAR08004" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08004" sboTerm="SBO:0000176" id="R_MAR08004" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -273360,7 +273364,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08004">
+            <rdf:Description rdf:about="#R_MAR08004">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/25VITD2Hm"/>
@@ -273372,15 +273376,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00620m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00620m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00519m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00519m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:and>
@@ -273393,7 +273397,7 @@
           </fbc:and>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08005" sboTerm="SBO:0000176" id="MAR08005" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08005" sboTerm="SBO:0000176" id="R_MAR08005" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -273401,7 +273405,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08005">
+            <rdf:Description rdf:about="#R_MAR08005">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/1a_25VITD2Hm"/>
@@ -273412,18 +273416,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00519m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00519m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00518m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00518m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08006" sboTerm="SBO:0000176" id="MAR08006" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08006" sboTerm="SBO:0000176" id="R_MAR08006" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -273431,7 +273435,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08006">
+            <rdf:Description rdf:about="#R_MAR08006">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/1a_24_25VITD3Hm"/>
@@ -273442,18 +273446,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00035m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00035m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01416m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01416m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08008" sboTerm="SBO:0000176" id="MAR08008" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08008" sboTerm="SBO:0000176" id="R_MAR08008" name="calcidiol,adrenodoxin:oxygen oxidoreductase (1-hydroxylating)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -273461,7 +273465,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08008">
+            <rdf:Description rdf:about="#R_MAR08008">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/25VITD3Hm"/>
@@ -273474,15 +273478,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01415m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01415m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01417m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01417m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:and>
@@ -273495,7 +273499,7 @@
           </fbc:and>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08011" sboTerm="SBO:0000176" id="MAR08011" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08011" sboTerm="SBO:0000176" id="R_MAR08011" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -273503,7 +273507,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08011">
+            <rdf:Description rdf:about="#R_MAR08011">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PVD3"/>
@@ -273515,13 +273519,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02765c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02765c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02805c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02805c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08012" sboTerm="SBO:0000176" id="MAR08012" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08012" sboTerm="SBO:0000176" id="R_MAR08012" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -273529,7 +273533,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08012">
+            <rdf:Description rdf:about="#R_MAR08012">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/LS3"/>
@@ -273541,13 +273545,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02422c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02422c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02765c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02765c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08013" sboTerm="SBO:0000176" id="MAR08013" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08013" sboTerm="SBO:0000176" id="R_MAR08013" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -273555,7 +273559,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08013">
+            <rdf:Description rdf:about="#R_MAR08013">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/TS3"/>
@@ -273567,13 +273571,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02765c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02765c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02953c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02953c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08014" sboTerm="SBO:0000176" id="MAR08014" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08014" sboTerm="SBO:0000176" id="R_MAR08014" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -273581,7 +273585,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08014">
+            <rdf:Description rdf:about="#R_MAR08014">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/VD3"/>
@@ -273593,13 +273597,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02765c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02765c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03142c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03142c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR06423" sboTerm="SBO:0000176" id="MAR06423" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06423" sboTerm="SBO:0000176" id="R_MAR06423" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -273608,7 +273612,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06423">
+            <rdf:Description rdf:about="#R_MAR06423">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/RE2897C"/>
@@ -273618,15 +273622,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01330c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02489c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01330c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02489c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01331c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01368c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01331c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01368c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR06432" sboTerm="SBO:0000176" id="MAR06432" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06432" sboTerm="SBO:0000176" id="R_MAR06432" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -273634,7 +273638,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06432">
+            <rdf:Description rdf:about="#R_MAR06432">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.35"/>
@@ -273652,22 +273656,22 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00345m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00345m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00287m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01334m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02774m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00287m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02774m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR06433" sboTerm="SBO:0000176" id="MAR06433" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06433" sboTerm="SBO:0000176" id="R_MAR06433" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -273675,7 +273679,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06433">
+            <rdf:Description rdf:about="#R_MAR06433">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.35"/>
@@ -273695,24 +273699,24 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00287m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00287m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01226m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01261m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01334m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02041m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01226m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02041m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR06434" sboTerm="SBO:0000176" id="MAR06434" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06434" sboTerm="SBO:0000176" id="R_MAR06434" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -273720,7 +273724,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06434">
+            <rdf:Description rdf:about="#R_MAR06434">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_6434"/>
@@ -273730,22 +273734,22 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01226m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01226m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01186m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01334m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02774m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01186m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02774m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR06435" sboTerm="SBO:0000176" id="MAR06435" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06435" sboTerm="SBO:0000176" id="R_MAR06435" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -273753,7 +273757,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06435">
+            <rdf:Description rdf:about="#R_MAR06435">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.35"/>
@@ -273773,22 +273777,22 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01186m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02630m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01186m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02630m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01096m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01261m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01334m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02041m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01096m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR06436" sboTerm="SBO:0000176" id="MAR06436" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06436" sboTerm="SBO:0000176" id="R_MAR06436" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -273796,7 +273800,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06436">
+            <rdf:Description rdf:about="#R_MAR06436">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.35"/>
@@ -273814,24 +273818,24 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01096m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01096m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00766m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01334m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02041m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02774m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00766m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02041m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02774m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR06447" sboTerm="SBO:0000176" id="MAR06447" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06447" sboTerm="SBO:0000176" id="R_MAR06447" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -273839,7 +273843,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06447">
+            <rdf:Description rdf:about="#R_MAR06447">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_6447"/>
@@ -273849,22 +273853,22 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00347m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00347m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00289m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01334m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02774m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00289m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02774m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR06448" sboTerm="SBO:0000176" id="MAR06448" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06448" sboTerm="SBO:0000176" id="R_MAR06448" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -273872,7 +273876,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06448">
+            <rdf:Description rdf:about="#R_MAR06448">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.35"/>
@@ -273891,24 +273895,24 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00289m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00289m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01228m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01261m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01334m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02041m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01228m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02041m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR06450" sboTerm="SBO:0000176" id="MAR06450" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06450" sboTerm="SBO:0000176" id="R_MAR06450" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -273916,7 +273920,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06450">
+            <rdf:Description rdf:about="#R_MAR06450">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.35"/>
@@ -273934,22 +273938,22 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01228m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01228m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01188m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01334m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02774m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01188m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02774m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR06451" sboTerm="SBO:0000176" id="MAR06451" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06451" sboTerm="SBO:0000176" id="R_MAR06451" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -273957,7 +273961,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06451">
+            <rdf:Description rdf:about="#R_MAR06451">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.35"/>
@@ -273977,22 +273981,22 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01188m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02630m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01188m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02630m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01097m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01261m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01334m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02041m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01097m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR06453" sboTerm="SBO:0000176" id="MAR06453" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06453" sboTerm="SBO:0000176" id="R_MAR06453" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -274000,7 +274004,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06453">
+            <rdf:Description rdf:about="#R_MAR06453">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.35"/>
@@ -274018,24 +274022,24 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01097m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01097m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01334m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01923m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02041m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02774m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01923m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02041m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02774m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR06456" sboTerm="SBO:0000176" id="MAR06456" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06456" sboTerm="SBO:0000176" id="R_MAR06456" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -274044,7 +274048,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06456">
+            <rdf:Description rdf:about="#R_MAR06456">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_6456"/>
@@ -274054,14 +274058,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01936c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01936c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01935c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01935c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR06457" sboTerm="SBO:0000176" id="MAR06457" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06457" sboTerm="SBO:0000176" id="R_MAR06457" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -274070,7 +274074,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06457">
+            <rdf:Description rdf:about="#R_MAR06457">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR103991"/>
@@ -274080,14 +274084,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01211c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01211c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01936c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02147c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01936c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02147c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR06458" sboTerm="SBO:0000176" id="MAR06458" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06458" sboTerm="SBO:0000176" id="R_MAR06458" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -274096,7 +274100,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06458">
+            <rdf:Description rdf:about="#R_MAR06458">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR103866"/>
@@ -274107,13 +274111,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01211c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01211c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01937c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01937c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR06459" sboTerm="SBO:0000176" id="MAR06459" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06459" sboTerm="SBO:0000176" id="R_MAR06459" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -274122,7 +274126,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06459">
+            <rdf:Description rdf:about="#R_MAR06459">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR103719"/>
@@ -274133,14 +274137,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01117c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01117c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01936c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02588c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01936c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02588c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR06460" sboTerm="SBO:0000176" id="MAR06460" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06460" sboTerm="SBO:0000176" id="R_MAR06460" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -274149,7 +274153,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06460">
+            <rdf:Description rdf:about="#R_MAR06460">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR103760"/>
@@ -274160,16 +274164,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01117c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01117c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01935c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02714c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01935c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02714c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR06461" sboTerm="SBO:0000176" id="MAR06461" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06461" sboTerm="SBO:0000176" id="R_MAR06461" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -274178,7 +274182,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06461">
+            <rdf:Description rdf:about="#R_MAR06461">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR103696"/>
@@ -274189,14 +274193,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02590c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02590c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01596c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02714c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01596c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02714c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR06470" sboTerm="SBO:0000176" id="MAR06470" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06470" sboTerm="SBO:0000176" id="R_MAR06470" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -274204,7 +274208,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06470">
+            <rdf:Description rdf:about="#R_MAR06470">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_6470"/>
@@ -274214,24 +274218,24 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00346m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00346m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00288m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01334m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02041m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02774m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00288m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02041m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02774m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR06471" sboTerm="SBO:0000176" id="MAR06471" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06471" sboTerm="SBO:0000176" id="R_MAR06471" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -274239,7 +274243,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06471">
+            <rdf:Description rdf:about="#R_MAR06471">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.35"/>
@@ -274257,24 +274261,24 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00288m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00288m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01227m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01261m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01334m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02041m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01227m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02041m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR06472" sboTerm="SBO:0000176" id="MAR06472" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06472" sboTerm="SBO:0000176" id="R_MAR06472" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -274282,7 +274286,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06472">
+            <rdf:Description rdf:about="#R_MAR06472">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.35"/>
@@ -274300,24 +274304,24 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01227m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01227m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01187m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01334m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02041m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02774m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01187m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02041m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02774m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR06473" sboTerm="SBO:0000176" id="MAR06473" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06473" sboTerm="SBO:0000176" id="R_MAR06473" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -274325,7 +274329,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06473">
+            <rdf:Description rdf:about="#R_MAR06473">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.35"/>
@@ -274343,24 +274347,24 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01187m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01187m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01097m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01261m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01334m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02041m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01097m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02041m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR06500" sboTerm="SBO:0000176" id="MAR06500" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06500" sboTerm="SBO:0000176" id="R_MAR06500" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -274369,7 +274373,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06500">
+            <rdf:Description rdf:about="#R_MAR06500">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR103652"/>
@@ -274380,15 +274384,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01328c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03103m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01328c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03103m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01329c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03102m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01329c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03102m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR06482" sboTerm="SBO:0000176" id="MAR06482" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06482" sboTerm="SBO:0000176" id="R_MAR06482" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -274396,7 +274400,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06482">
+            <rdf:Description rdf:about="#R_MAR06482">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_6482"/>
@@ -274406,24 +274410,24 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00344m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00344m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00286m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01334m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02041m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02774m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00286m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02041m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02774m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR06484" sboTerm="SBO:0000176" id="MAR06484" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06484" sboTerm="SBO:0000176" id="R_MAR06484" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -274431,7 +274435,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06484">
+            <rdf:Description rdf:about="#R_MAR06484">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.35"/>
@@ -274449,24 +274453,24 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00286m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00286m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01225m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01261m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01334m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02041m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01225m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02041m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR06486" sboTerm="SBO:0000176" id="MAR06486" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06486" sboTerm="SBO:0000176" id="R_MAR06486" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -274474,7 +274478,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06486">
+            <rdf:Description rdf:about="#R_MAR06486">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.35"/>
@@ -274492,24 +274496,24 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01225m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01225m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01185m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01334m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02041m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02774m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01185m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02041m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02774m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR06488" sboTerm="SBO:0000176" id="MAR06488" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06488" sboTerm="SBO:0000176" id="R_MAR06488" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -274517,7 +274521,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06488">
+            <rdf:Description rdf:about="#R_MAR06488">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_6488"/>
@@ -274527,24 +274531,24 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01185m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01185m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01096m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01261m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01334m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02041m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01096m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02041m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR06490" sboTerm="SBO:0000176" id="MAR06490" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06490" sboTerm="SBO:0000176" id="R_MAR06490" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -274553,7 +274557,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06490">
+            <rdf:Description rdf:about="#R_MAR06490">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.17"/>
@@ -274564,12 +274568,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01923c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03109c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01923c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03109c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01924c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01924c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -274589,7 +274593,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06492" sboTerm="SBO:0000176" id="MAR06492" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06492" sboTerm="SBO:0000176" id="R_MAR06492" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -274598,7 +274602,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06492">
+            <rdf:Description rdf:about="#R_MAR06492">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.2.1.31"/>
@@ -274609,13 +274613,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01924c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01924c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01923c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01973c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01923c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01973c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -274624,7 +274628,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06495" sboTerm="SBO:0000176" id="MAR06495" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06495" sboTerm="SBO:0000176" id="R_MAR06495" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -274633,7 +274637,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06495">
+            <rdf:Description rdf:about="#R_MAR06495">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.17"/>
@@ -274644,12 +274648,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00766c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03109c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00766c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03109c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01321c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01321c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -274669,7 +274673,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06496" sboTerm="SBO:0000176" id="MAR06496" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06496" sboTerm="SBO:0000176" id="R_MAR06496" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -274678,7 +274682,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06496">
+            <rdf:Description rdf:about="#R_MAR06496">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.2.1.31"/>
@@ -274689,13 +274693,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01321c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01321c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00766c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01973c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00766c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01973c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -274704,7 +274708,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06501" sboTerm="SBO:0000176" id="MAR06501" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06501" sboTerm="SBO:0000176" id="R_MAR06501" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -274713,7 +274717,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06501">
+            <rdf:Description rdf:about="#R_MAR06501">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR103658"/>
@@ -274724,13 +274728,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01212c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01212c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01329c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01329c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR06992" sboTerm="SBO:0000176" id="MAR06992" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06992" sboTerm="SBO:0000176" id="R_MAR06992" name="Benzpyrene, NADPH:oxygen oxidoreductase (RH-hydroxylating or -epoxidizing)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -274738,7 +274742,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06992">
+            <rdf:Description rdf:about="#R_MAR06992">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.14.1"/>
@@ -274751,15 +274755,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01374c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01374c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01379c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01379c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -274769,7 +274773,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06993" sboTerm="SBO:0000176" id="MAR06993" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06993" sboTerm="SBO:0000176" id="R_MAR06993" name="Benzpyrene,NADPH:oxygen oxidoreductase (RH-hydroxylating or -epoxidizing)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -274777,7 +274781,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06993">
+            <rdf:Description rdf:about="#R_MAR06993">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.14.1"/>
@@ -274790,15 +274794,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01374c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01374c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01378c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01378c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -274808,7 +274812,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06994" sboTerm="SBO:0000176" id="MAR06994" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06994" sboTerm="SBO:0000176" id="R_MAR06994" name="benzpyrene,NADPH:oxygen oxidoreductase (RH-hydroxylating or -epoxidizing)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -274816,7 +274820,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06994">
+            <rdf:Description rdf:about="#R_MAR06994">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.14.1"/>
@@ -274829,15 +274833,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01374c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01374c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01375c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01375c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -274847,7 +274851,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06995" sboTerm="SBO:0000176" id="MAR06995" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06995" sboTerm="SBO:0000176" id="R_MAR06995" name="4,5-dihydro-4-hydroxy-5-S-glutathionyl-benzo[a]pyrene glutathione-lyase (epoxide-forming)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -274855,7 +274859,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06995">
+            <rdf:Description rdf:about="#R_MAR06995">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.5.1.18"/>
@@ -274868,12 +274872,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00944c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00944c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01375c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02026c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01375c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -274885,7 +274889,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06996" sboTerm="SBO:0000176" id="MAR06996" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06996" sboTerm="SBO:0000176" id="R_MAR06996" name="benzo[a]pyrene-7,8-oxide hydrolase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -274893,7 +274897,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06996">
+            <rdf:Description rdf:about="#R_MAR06996">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.3.2.9"/>
@@ -274906,11 +274910,11 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01378c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01378c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01377c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01377c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -274920,7 +274924,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06997" sboTerm="SBO:0000176" id="MAR06997" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06997" sboTerm="SBO:0000176" id="R_MAR06997" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -274928,7 +274932,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06997">
+            <rdf:Description rdf:about="#R_MAR06997">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R07086"/>
@@ -274940,13 +274944,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01379c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01379c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01241c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01241c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR06998" sboTerm="SBO:0000176" id="MAR06998" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06998" sboTerm="SBO:0000176" id="R_MAR06998" name="7,8-dihydro-7-hydroxy-8-S-glutathionyl-benzo[a]pyrene hydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -274954,7 +274958,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06998">
+            <rdf:Description rdf:about="#R_MAR06998">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.5.1.18"/>
@@ -274967,13 +274971,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01377c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02026c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01377c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01175c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01175c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -274985,7 +274989,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06999" sboTerm="SBO:0000176" id="MAR06999" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06999" sboTerm="SBO:0000176" id="R_MAR06999" name="benzo[a]pyrene-7,8-diol, NADPH:oxygen oxidoreductase (RH-hydroxylating or -epoxidizing)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -274993,7 +274997,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06999">
+            <rdf:Description rdf:about="#R_MAR06999">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.14.1"/>
@@ -275006,15 +275010,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01377c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01377c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01376c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01376c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -275024,7 +275028,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07000" sboTerm="SBO:0000176" id="MAR07000" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07000" sboTerm="SBO:0000176" id="R_MAR07000" name="9-hydroxybenzo[a]pyrene, NADPH:oxygen oxidoreductase (RH-hydroxylating or -epoxidizing)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -275032,7 +275036,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07000">
+            <rdf:Description rdf:about="#R_MAR07000">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.14.1"/>
@@ -275045,15 +275049,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01241c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01241c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01242c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01242c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -275063,7 +275067,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07001" sboTerm="SBO:0000176" id="MAR07001" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07001" sboTerm="SBO:0000176" id="R_MAR07001" name="naphthalene, NADPH:oxygen oxidoreductase (RH-hydroxylating or -epoxidizing)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -275071,7 +275075,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07001">
+            <rdf:Description rdf:about="#R_MAR07001">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.14.1"/>
@@ -275084,15 +275088,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02556c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02556c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00032c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00032c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -275102,7 +275106,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07002" sboTerm="SBO:0000176" id="MAR07002" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07002" sboTerm="SBO:0000176" id="R_MAR07002" name="Naphthalene, NADPH:oxygen oxidoreductase (RH-hydroxylating or -epoxidizing)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -275110,7 +275114,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07002">
+            <rdf:Description rdf:about="#R_MAR07002">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.14.1"/>
@@ -275123,15 +275127,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02556c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02556c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00034c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00034c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -275141,7 +275145,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07003" sboTerm="SBO:0000176" id="MAR07003" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07003" sboTerm="SBO:0000176" id="R_MAR07003" name="(1R)-hydroxy-(2R)-glutathionyl-1,2-dihydronaphthalene glutathione-lyase (epoxide-forming)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -275149,7 +275153,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07003">
+            <rdf:Description rdf:about="#R_MAR07003">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.5.1.18"/>
@@ -275162,12 +275166,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00032c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02026c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00032c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00031c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00031c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -275179,7 +275183,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07004" sboTerm="SBO:0000176" id="MAR07004" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07004" sboTerm="SBO:0000176" id="R_MAR07004" name="(1R,2S)-naphthalene 1,2-oxide hydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -275187,7 +275191,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07004">
+            <rdf:Description rdf:about="#R_MAR07004">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.3.2.9"/>
@@ -275200,11 +275204,11 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00032c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00032c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00243c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00243c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -275214,7 +275218,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07005" sboTerm="SBO:0000176" id="MAR07005" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07005" sboTerm="SBO:0000176" id="R_MAR07005" name="1,2-Dihydronaphthalene-1,2-diol dehydrogenase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -275222,7 +275226,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07005">
+            <rdf:Description rdf:about="#R_MAR07005">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.1.20"/>
@@ -275235,13 +275239,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00243c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00243c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02557c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02557c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -275250,7 +275254,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07006" sboTerm="SBO:0000176" id="MAR07006" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07006" sboTerm="SBO:0000176" id="R_MAR07006" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -275258,7 +275262,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07006">
+            <rdf:Description rdf:about="#R_MAR07006">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R07017"/>
@@ -275270,14 +275274,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02557c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02557c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00246c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM00246c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="2" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07007" sboTerm="SBO:0000176" id="MAR07007" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07007" sboTerm="SBO:0000176" id="R_MAR07007" name="1,2-Dihydronaphthalene-1,2-diol, NADPH:oxygen oxidoreductase (RH-hydroxylating or -epoxidizing)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -275285,7 +275289,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07007">
+            <rdf:Description rdf:about="#R_MAR07007">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R07016"/>
@@ -275297,18 +275301,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00243c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00243c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00244c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00244c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07008" sboTerm="SBO:0000176" id="MAR07008" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07008" sboTerm="SBO:0000176" id="R_MAR07008" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -275316,7 +275320,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07008">
+            <rdf:Description rdf:about="#R_MAR07008">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R07009"/>
@@ -275328,13 +275332,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00032c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00032c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00538c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00538c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07009" sboTerm="SBO:0000176" id="MAR07009" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07009" sboTerm="SBO:0000176" id="R_MAR07009" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -275342,7 +275346,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07009">
+            <rdf:Description rdf:about="#R_MAR07009">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R07018"/>
@@ -275354,18 +275358,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00538c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00538c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00250c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00250c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07010" sboTerm="SBO:0000176" id="MAR07010" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07010" sboTerm="SBO:0000176" id="R_MAR07010" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -275373,7 +275377,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07010">
+            <rdf:Description rdf:about="#R_MAR07010">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R07019"/>
@@ -275385,14 +275389,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00250c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00250c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00251c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM00251c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="2" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07011" sboTerm="SBO:0000176" id="MAR07011" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07011" sboTerm="SBO:0000176" id="R_MAR07011" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -275400,7 +275404,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07011">
+            <rdf:Description rdf:about="#R_MAR07011">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R07011"/>
@@ -275412,13 +275416,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00032c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00032c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00668c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00668c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07012" sboTerm="SBO:0000176" id="MAR07012" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07012" sboTerm="SBO:0000176" id="R_MAR07012" name="beta-Naphthol, NADPH:oxygen oxidoreductase (RH-hydroxylating or -epoxidizing)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -275426,7 +275430,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07012">
+            <rdf:Description rdf:about="#R_MAR07012">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R07020"/>
@@ -275438,18 +275442,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00668c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00668c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02557c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02557c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07013" sboTerm="SBO:0000176" id="MAR07013" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07013" sboTerm="SBO:0000176" id="R_MAR07013" name="(1S)-hydroxy-(2S)-glutathionyl-1,2-dihydronaphthalene glutathione-lyase (epoxide-forming)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -275457,7 +275461,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07013">
+            <rdf:Description rdf:about="#R_MAR07013">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.5.1.18"/>
@@ -275470,12 +275474,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00034c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02026c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00034c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00033c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00033c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -275487,7 +275491,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07014" sboTerm="SBO:0000176" id="MAR07014" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07014" sboTerm="SBO:0000176" id="R_MAR07014" name="(1S,2R)-naphthalene 1,2-oxide hydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -275495,7 +275499,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07014">
+            <rdf:Description rdf:about="#R_MAR07014">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.3.2.9"/>
@@ -275508,11 +275512,11 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00034c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00034c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00243c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00243c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -275522,7 +275526,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07015" sboTerm="SBO:0000176" id="MAR07015" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07015" sboTerm="SBO:0000176" id="R_MAR07015" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -275530,7 +275534,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07015">
+            <rdf:Description rdf:about="#R_MAR07015">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R07010"/>
@@ -275542,13 +275546,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00034c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00034c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00538c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00538c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07016" sboTerm="SBO:0000176" id="MAR07016" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07016" sboTerm="SBO:0000176" id="R_MAR07016" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -275556,7 +275560,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07016">
+            <rdf:Description rdf:about="#R_MAR07016">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R07012"/>
@@ -275568,13 +275572,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00034c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00034c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00668c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00668c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07017" sboTerm="SBO:0000176" id="MAR07017" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07017" sboTerm="SBO:0000176" id="R_MAR07017" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -275582,7 +275586,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07017">
+            <rdf:Description rdf:about="#R_MAR07017">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.14.1"/>
@@ -275595,15 +275599,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01296c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01296c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01302c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01302c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -275613,7 +275617,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07019" sboTerm="SBO:0000176" id="MAR07019" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07019" sboTerm="SBO:0000176" id="R_MAR07019" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -275621,7 +275625,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07019">
+            <rdf:Description rdf:about="#R_MAR07019">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.14.1"/>
@@ -275634,15 +275638,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01300c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01300c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01301c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01301c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -275652,7 +275656,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07021" sboTerm="SBO:0000176" id="MAR07021" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07021" sboTerm="SBO:0000176" id="R_MAR07021" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -275660,7 +275664,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07021">
+            <rdf:Description rdf:about="#R_MAR07021">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.14.1"/>
@@ -275673,15 +275677,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01296c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01296c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01298c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01298c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -275691,7 +275695,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07022" sboTerm="SBO:0000176" id="MAR07022" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07022" sboTerm="SBO:0000176" id="R_MAR07022" name="glutathione-S-transferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -275699,7 +275703,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07022">
+            <rdf:Description rdf:about="#R_MAR07022">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.5.1.18"/>
@@ -275712,12 +275716,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01298c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02026c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01298c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01299c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01299c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -275729,7 +275733,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07023" sboTerm="SBO:0000176" id="MAR07023" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07023" sboTerm="SBO:0000176" id="R_MAR07023" name="epoxide hydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -275737,7 +275741,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07023">
+            <rdf:Description rdf:about="#R_MAR07023">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.3.2.9"/>
@@ -275750,11 +275754,11 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01298c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01298c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01295c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01295c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -275764,7 +275768,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07024" sboTerm="SBO:0000176" id="MAR07024" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07024" sboTerm="SBO:0000176" id="R_MAR07024" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -275772,7 +275776,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07024">
+            <rdf:Description rdf:about="#R_MAR07024">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R09411"/>
@@ -275784,14 +275788,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01295c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01295c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01294c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01294c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07029" sboTerm="SBO:0000176" id="MAR07029" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07029" sboTerm="SBO:0000176" id="R_MAR07029" name="trichloroethene:glutathione S-(1,2-dichlorovinyl)transferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -275799,7 +275803,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07029">
+            <rdf:Description rdf:about="#R_MAR07029">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.5.1.18"/>
@@ -275812,12 +275816,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02026c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03044c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03044c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02144c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02850c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02144c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02850c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -275829,7 +275833,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07030" sboTerm="SBO:0000176" id="MAR07030" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07030" sboTerm="SBO:0000176" id="R_MAR07030" name="trichloroethene, NADPH:oxygen oxidoreductase (RH-hydroxylating or -epoxidizing)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -275837,7 +275841,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07030">
+            <rdf:Description rdf:about="#R_MAR07030">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.14.1"/>
@@ -275850,15 +275854,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03044c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03044c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02954c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02954c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -275868,7 +275872,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07031" sboTerm="SBO:0000176" id="MAR07031" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07031" sboTerm="SBO:0000176" id="R_MAR07031" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -275876,7 +275880,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07031">
+            <rdf:Description rdf:about="#R_MAR07031">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R07102"/>
@@ -275888,13 +275892,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02954c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02954c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01692c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01692c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07032" sboTerm="SBO:0000176" id="MAR07032" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07032" sboTerm="SBO:0000176" id="R_MAR07032" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -275902,7 +275906,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07032">
+            <rdf:Description rdf:about="#R_MAR07032">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R07103"/>
@@ -275914,18 +275918,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01692c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01692c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01442c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01691c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01442c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01691c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="2" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07033" sboTerm="SBO:0000176" id="MAR07033" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07033" sboTerm="SBO:0000176" id="R_MAR07033" name="trichloroethene, NADPH:oxygen oxidoreductase (RH-hydroxylating or -epoxidizing)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -275933,7 +275937,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07033">
+            <rdf:Description rdf:about="#R_MAR07033">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.14.1"/>
@@ -275946,15 +275950,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03044c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03044c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01441c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01441c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -275964,7 +275968,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07034" sboTerm="SBO:0000176" id="MAR07034" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07034" sboTerm="SBO:0000176" id="R_MAR07034" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -275972,7 +275976,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07034">
+            <rdf:Description rdf:about="#R_MAR07034">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R07101"/>
@@ -275984,14 +275988,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01441c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01441c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01440c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01440c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07035" sboTerm="SBO:0000176" id="MAR07035" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07035" sboTerm="SBO:0000176" id="R_MAR07035" name="Chloral:NAD(P)+ oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -275999,7 +276003,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07035">
+            <rdf:Description rdf:about="#R_MAR07035">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.2.1.5"/>
@@ -276012,13 +276016,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01440c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01440c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02553c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03041c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02553c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03041c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -276026,7 +276030,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07036" sboTerm="SBO:0000176" id="MAR07036" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07036" sboTerm="SBO:0000176" id="R_MAR07036" name="trichloroethanol, NADPH:oxygen oxidoreductase (RH-hydroxylating or -epoxidizing)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -276034,7 +276038,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07036">
+            <rdf:Description rdf:about="#R_MAR07036">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.14.1"/>
@@ -276047,15 +276051,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03043c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03043c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040c" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03041c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03041c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -276065,7 +276069,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07037" sboTerm="SBO:0000176" id="MAR07037" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07037" sboTerm="SBO:0000176" id="R_MAR07037" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -276073,7 +276077,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07037">
+            <rdf:Description rdf:about="#R_MAR07037">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R07123"/>
@@ -276085,16 +276089,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03041c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03041c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01442c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01691c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01442c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01691c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07038" sboTerm="SBO:0000176" id="MAR07038" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07038" sboTerm="SBO:0000176" id="R_MAR07038" name="trichloroethanol:NAD+ oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -276102,7 +276106,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07038">
+            <rdf:Description rdf:about="#R_MAR07038">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.1"/>
@@ -276115,14 +276119,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01440c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01440c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03043c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03043c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -276131,7 +276135,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07039" sboTerm="SBO:0000176" id="MAR07039" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07039" sboTerm="SBO:0000176" id="R_MAR07039" name="UDP-glucuronate beta-D-glucuronosyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -276139,7 +276143,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07039">
+            <rdf:Description rdf:about="#R_MAR07039">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.17"/>
@@ -276152,13 +276156,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03043c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03109c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03043c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03109c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03042c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03042c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -276178,7 +276182,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07040" sboTerm="SBO:0000176" id="MAR07040" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07040" sboTerm="SBO:0000176" id="R_MAR07040" name="bromobenzene, NADPH:oxygen oxidoreductase (RH-hydroxylating or -epoxidizing)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -276186,7 +276190,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07040">
+            <rdf:Description rdf:about="#R_MAR07040">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.14.1"/>
@@ -276199,15 +276203,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01403c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01403c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01407c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01407c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -276217,7 +276221,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07041" sboTerm="SBO:0000176" id="MAR07041" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07041" sboTerm="SBO:0000176" id="R_MAR07041" name="3,4-dihydro-3-hydroxy-4-S-glutathionyl bromobenzene glutathione-lyase (epoxide-forming)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -276225,7 +276229,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07041">
+            <rdf:Description rdf:about="#R_MAR07041">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.5.1.18"/>
@@ -276238,12 +276242,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01407c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02026c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01407c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00724c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00724c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -276255,7 +276259,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07042" sboTerm="SBO:0000176" id="MAR07042" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07042" sboTerm="SBO:0000176" id="R_MAR07042" name="bromobenzene-3,4-oxide hydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -276263,7 +276267,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07042">
+            <rdf:Description rdf:about="#R_MAR07042">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.3.2.9"/>
@@ -276276,11 +276280,11 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01407c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01407c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01406c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01406c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -276290,7 +276294,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07043" sboTerm="SBO:0000176" id="MAR07043" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07043" sboTerm="SBO:0000176" id="R_MAR07043" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -276298,7 +276302,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07043">
+            <rdf:Description rdf:about="#R_MAR07043">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R07073"/>
@@ -276310,13 +276314,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01407c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01407c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00974c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00974c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07044" sboTerm="SBO:0000176" id="MAR07044" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07044" sboTerm="SBO:0000176" id="R_MAR07044" name="4-bromophenol, NADPH:oxygen oxidoreductase (RH-hydroxylating or -epoxidizing)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -276324,7 +276328,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07044">
+            <rdf:Description rdf:about="#R_MAR07044">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.14.1"/>
@@ -276337,21 +276341,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00974c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00974c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00975c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00975c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Cyp18a1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07045" sboTerm="SBO:0000176" id="MAR07045" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07045" sboTerm="SBO:0000176" id="R_MAR07045" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -276359,7 +276363,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07045">
+            <rdf:Description rdf:about="#R_MAR07045">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R07076"/>
@@ -276371,13 +276375,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00975c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00975c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00973c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00973c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07046" sboTerm="SBO:0000176" id="MAR07046" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07046" sboTerm="SBO:0000176" id="R_MAR07046" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -276385,7 +276389,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07046">
+            <rdf:Description rdf:about="#R_MAR07046">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R07077"/>
@@ -276397,14 +276401,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00973c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00973c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00972c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM00972c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="2" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07047" sboTerm="SBO:0000176" id="MAR07047" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07047" sboTerm="SBO:0000176" id="R_MAR07047" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -276412,7 +276416,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07047">
+            <rdf:Description rdf:about="#R_MAR07047">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R07078"/>
@@ -276424,14 +276428,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01406c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01406c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00973c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM00973c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="2" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07048" sboTerm="SBO:0000176" id="MAR07048" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07048" sboTerm="SBO:0000176" id="R_MAR07048" name="bromobenzene, NADPH:oxygen oxidoreductase (RH-hydroxylating or -epoxidizing)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -276439,7 +276443,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07048">
+            <rdf:Description rdf:about="#R_MAR07048">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.14.1"/>
@@ -276452,15 +276456,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01403c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01403c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01405c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01405c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -276470,7 +276474,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07049" sboTerm="SBO:0000176" id="MAR07049" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07049" sboTerm="SBO:0000176" id="R_MAR07049" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -276478,7 +276482,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07049">
+            <rdf:Description rdf:about="#R_MAR07049">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R07074"/>
@@ -276490,13 +276494,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00637c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00637c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01405c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01405c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07050" sboTerm="SBO:0000176" id="MAR07050" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07050" sboTerm="SBO:0000176" id="R_MAR07050" name="2,3-dihydro-2-S-glutathionyl-3-hydroxy bromobenzene glutathione-lyase (epoxide-forming)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -276504,7 +276508,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07050">
+            <rdf:Description rdf:about="#R_MAR07050">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.5.1.18"/>
@@ -276517,12 +276521,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01405c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02026c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01405c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00571c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00571c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -276534,7 +276538,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07051" sboTerm="SBO:0000176" id="MAR07051" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07051" sboTerm="SBO:0000176" id="R_MAR07051" name="bromobenzene-2,3-oxide hydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -276542,7 +276546,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07051">
+            <rdf:Description rdf:about="#R_MAR07051">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.3.2.9"/>
@@ -276555,11 +276559,11 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01405c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01405c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01404c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01404c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -276569,7 +276573,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07053" sboTerm="SBO:0000176" id="MAR07053" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07053" sboTerm="SBO:0000176" id="R_MAR07053" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -276577,7 +276581,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07053">
+            <rdf:Description rdf:about="#R_MAR07053">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.14.1"/>
@@ -276590,15 +276594,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01174c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01174c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01196c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01196c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -276608,7 +276612,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07054" sboTerm="SBO:0000176" id="MAR07054" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07054" sboTerm="SBO:0000176" id="R_MAR07054" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -276616,7 +276620,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07054">
+            <rdf:Description rdf:about="#R_MAR07054">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.14.1"/>
@@ -276629,15 +276633,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01174c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01174c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01173c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01173c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -276647,7 +276651,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07055" sboTerm="SBO:0000176" id="MAR07055" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07055" sboTerm="SBO:0000176" id="R_MAR07055" name="microsomal epoxide hydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -276655,7 +276659,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07055">
+            <rdf:Description rdf:about="#R_MAR07055">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.3.2.9"/>
@@ -276668,11 +276672,11 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00435c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00435c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03032c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03032c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -276682,7 +276686,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07056" sboTerm="SBO:0000176" id="MAR07056" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07056" sboTerm="SBO:0000176" id="R_MAR07056" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -276690,7 +276694,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07056">
+            <rdf:Description rdf:about="#R_MAR07056">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.14.1"/>
@@ -276703,15 +276707,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03032c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03032c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00030c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00030c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -276721,7 +276725,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07057" sboTerm="SBO:0000176" id="MAR07057" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07057" sboTerm="SBO:0000176" id="R_MAR07057" name="3&apos;-phosphoadenylyl-sulfate:7-hydroxymethyl-12-methylbenz[a]anthracene sulfotransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -276729,7 +276733,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07057">
+            <rdf:Description rdf:about="#R_MAR07057">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.8.2.14"/>
@@ -276742,18 +276746,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01196c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02682c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01196c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02682c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01195c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02681c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01195c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02681c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="St2"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07058" sboTerm="SBO:0000176" id="MAR07058" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07058" sboTerm="SBO:0000176" id="R_MAR07058" name="microsomal epoxide hydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -276761,7 +276765,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07058">
+            <rdf:Description rdf:about="#R_MAR07058">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.3.2.9"/>
@@ -276774,11 +276778,11 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01173c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01173c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03038c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03038c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -276788,7 +276792,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07059" sboTerm="SBO:0000176" id="MAR07059" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07059" sboTerm="SBO:0000176" id="R_MAR07059" name="carbonyl reductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -276796,7 +276800,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07059">
+            <rdf:Description rdf:about="#R_MAR07059">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.146"/>
@@ -276811,13 +276815,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00932c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00932c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00929c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00929c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -276826,7 +276830,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07060" sboTerm="SBO:0000176" id="MAR07060" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07060" sboTerm="SBO:0000176" id="R_MAR07060" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -276834,7 +276838,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07060">
+            <rdf:Description rdf:about="#R_MAR07060">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.14.1"/>
@@ -276847,15 +276851,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00932c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00932c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00951c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00951c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -276865,7 +276869,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07061" sboTerm="SBO:0000176" id="MAR07061" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07061" sboTerm="SBO:0000176" id="R_MAR07061" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -276873,7 +276877,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07061">
+            <rdf:Description rdf:about="#R_MAR07061">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.14.1"/>
@@ -276886,21 +276890,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00932c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00932c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00992c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00992c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Cyp18a1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07062" sboTerm="SBO:0000176" id="MAR07062" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07062" sboTerm="SBO:0000176" id="R_MAR07062" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -276908,7 +276912,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07062">
+            <rdf:Description rdf:about="#R_MAR07062">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R09429"/>
@@ -276920,18 +276924,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00932c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00932c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00927c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00927c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07063" sboTerm="SBO:0000176" id="MAR07063" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07063" sboTerm="SBO:0000176" id="R_MAR07063" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -276939,7 +276943,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07063">
+            <rdf:Description rdf:about="#R_MAR07063">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R09424"/>
@@ -276951,21 +276955,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00929c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00929c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00226c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00226c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Cyp18a1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07064" sboTerm="SBO:0000176" id="MAR07064" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07064" sboTerm="SBO:0000176" id="R_MAR07064" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -276973,7 +276977,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07064">
+            <rdf:Description rdf:about="#R_MAR07064">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R09425"/>
@@ -276985,21 +276989,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00929c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00929c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01320c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01320c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Cyp18a1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07065" sboTerm="SBO:0000176" id="MAR07065" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07065" sboTerm="SBO:0000176" id="R_MAR07065" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -277007,7 +277011,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07065">
+            <rdf:Description rdf:about="#R_MAR07065">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.17"/>
@@ -277020,12 +277024,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00929c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03109c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00929c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03109c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00928c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00928c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -277045,7 +277049,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07066" sboTerm="SBO:0000176" id="MAR07066" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07066" sboTerm="SBO:0000176" id="R_MAR07066" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -277053,7 +277057,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07066">
+            <rdf:Description rdf:about="#R_MAR07066">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.17"/>
@@ -277066,12 +277070,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00929c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03109c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00929c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03109c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02607c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02607c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -277091,7 +277095,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07067" sboTerm="SBO:0000176" id="MAR07067" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07067" sboTerm="SBO:0000176" id="R_MAR07067" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -277099,7 +277103,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07067">
+            <rdf:Description rdf:about="#R_MAR07067">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R09430"/>
@@ -277111,18 +277115,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00929c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00929c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00930c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00930c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07068" sboTerm="SBO:0000176" id="MAR07068" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07068" sboTerm="SBO:0000176" id="R_MAR07068" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -277130,7 +277134,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07068">
+            <rdf:Description rdf:about="#R_MAR07068">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R09431"/>
@@ -277142,14 +277146,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00951c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00951c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00931c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01831c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00931c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01831c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07069" sboTerm="SBO:0000176" id="MAR07069" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07069" sboTerm="SBO:0000176" id="R_MAR07069" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -277157,7 +277161,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07069">
+            <rdf:Description rdf:about="#R_MAR07069">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R09435"/>
@@ -277169,14 +277173,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00931c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00931c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00985c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02589c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00985c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02589c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07070" sboTerm="SBO:0000176" id="MAR07070" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07070" sboTerm="SBO:0000176" id="R_MAR07070" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -277184,7 +277188,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07070">
+            <rdf:Description rdf:about="#R_MAR07070">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R09438"/>
@@ -277196,18 +277200,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00985c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00985c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00917c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00917c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07071" sboTerm="SBO:0000176" id="MAR07071" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07071" sboTerm="SBO:0000176" id="R_MAR07071" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -277215,7 +277219,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07071">
+            <rdf:Description rdf:about="#R_MAR07071">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R09433"/>
@@ -277227,14 +277231,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00992c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00992c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01025c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02608c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01025c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02608c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07072" sboTerm="SBO:0000176" id="MAR07072" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07072" sboTerm="SBO:0000176" id="R_MAR07072" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -277242,7 +277246,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07072">
+            <rdf:Description rdf:about="#R_MAR07072">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R09437"/>
@@ -277253,18 +277257,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01025c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01025c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00917c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00917c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07073" sboTerm="SBO:0000176" id="MAR07073" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07073" sboTerm="SBO:0000176" id="R_MAR07073" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -277272,7 +277276,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07073">
+            <rdf:Description rdf:about="#R_MAR07073">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R09434"/>
@@ -277284,14 +277288,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00226c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00226c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01035c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02608c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01035c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02608c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07074" sboTerm="SBO:0000176" id="MAR07074" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07074" sboTerm="SBO:0000176" id="R_MAR07074" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -277299,7 +277303,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07074">
+            <rdf:Description rdf:about="#R_MAR07074">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R09439"/>
@@ -277311,17 +277315,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01035c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01035c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01929c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01929c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07075" sboTerm="SBO:0000176" id="MAR07075" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07075" sboTerm="SBO:0000176" id="R_MAR07075" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -277329,7 +277333,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07075">
+            <rdf:Description rdf:about="#R_MAR07075">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R09436"/>
@@ -277341,14 +277345,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01319c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01319c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00225c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02589c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00225c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02589c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07076" sboTerm="SBO:0000176" id="MAR07076" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07076" sboTerm="SBO:0000176" id="R_MAR07076" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -277356,7 +277360,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07076">
+            <rdf:Description rdf:about="#R_MAR07076">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R09440"/>
@@ -277368,18 +277372,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00225c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00225c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01929c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01929c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07077" sboTerm="SBO:0000176" id="MAR07077" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07077" sboTerm="SBO:0000176" id="R_MAR07077" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -277387,7 +277391,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07077">
+            <rdf:Description rdf:about="#R_MAR07077">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R09432"/>
@@ -277399,14 +277403,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01320c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01320c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01319c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01831c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01319c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01831c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07078" sboTerm="SBO:0000176" id="MAR07078" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07078" sboTerm="SBO:0000176" id="R_MAR07078" name="1-nitronaphthalene, NADPH:oxygen oxidoreductase (RH-hydroxylating or -epoxidizing)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -277414,7 +277418,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07078">
+            <rdf:Description rdf:about="#R_MAR07078">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.14.1"/>
@@ -277427,15 +277431,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00545c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00545c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00546c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00546c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -277445,7 +277449,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07079" sboTerm="SBO:0000176" id="MAR07079" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07079" sboTerm="SBO:0000176" id="R_MAR07079" name="1-nitro-5-hydroxy-6-glutathionyl-5,6-dihydronaphthalene glutathione-lyase (epoxide-forming)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -277453,7 +277457,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07079">
+            <rdf:Description rdf:about="#R_MAR07079">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.5.1.18"/>
@@ -277466,12 +277470,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00546c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02026c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00546c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00542c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00542c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -277483,7 +277487,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07080" sboTerm="SBO:0000176" id="MAR07080" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07080" sboTerm="SBO:0000176" id="R_MAR07080" name="1-nitro-5-glutathionyl-6-hydroxy-5,6-dihydronaphthalene glutathione-lyase (epoxide-forming)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -277491,7 +277495,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07080">
+            <rdf:Description rdf:about="#R_MAR07080">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.5.1.18"/>
@@ -277504,12 +277508,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00546c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02026c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00546c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00541c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00541c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -277521,7 +277525,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07081" sboTerm="SBO:0000176" id="MAR07081" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07081" sboTerm="SBO:0000176" id="R_MAR07081" name="1-nitronaphthalene-5,6-oxide hydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -277529,7 +277533,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07081">
+            <rdf:Description rdf:about="#R_MAR07081">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.3.2.9"/>
@@ -277542,11 +277546,11 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00546c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00546c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00540c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00540c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -277556,7 +277560,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07082" sboTerm="SBO:0000176" id="MAR07082" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07082" sboTerm="SBO:0000176" id="R_MAR07082" name="1-nitronaphthalene, NADPH:oxygen oxidoreductase (RH-hydroxylating or -epoxidizing)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -277564,7 +277568,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07082">
+            <rdf:Description rdf:about="#R_MAR07082">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.14.1"/>
@@ -277577,15 +277581,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00545c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00545c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00547c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00547c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -277595,7 +277599,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07083" sboTerm="SBO:0000176" id="MAR07083" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07083" sboTerm="SBO:0000176" id="R_MAR07083" name="1-nitro-7-hydroxy-8-glutathionyl-7,8-dihydronaphthalene glutathione-lyase (epoxide-forming)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -277603,7 +277607,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07083">
+            <rdf:Description rdf:about="#R_MAR07083">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.5.1.18"/>
@@ -277616,12 +277620,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00547c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02026c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00547c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00544c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00544c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -277633,7 +277637,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07084" sboTerm="SBO:0000176" id="MAR07084" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07084" sboTerm="SBO:0000176" id="R_MAR07084" name="1-nitro-7-glutathionyl-8-hydroxy-7,8-dihydronaphthalene glutathione-lyase (epoxide-forming)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -277641,7 +277645,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07084">
+            <rdf:Description rdf:about="#R_MAR07084">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.5.1.18"/>
@@ -277654,12 +277658,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00547c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02026c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00547c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00543c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00543c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -277671,7 +277675,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07085" sboTerm="SBO:0000176" id="MAR07085" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07085" sboTerm="SBO:0000176" id="R_MAR07085" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -277679,7 +277683,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07085">
+            <rdf:Description rdf:about="#R_MAR07085">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R07028"/>
@@ -277691,15 +277695,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00545c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM00545c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="3" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00548c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00548c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07086" sboTerm="SBO:0000176" id="MAR07086" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07086" sboTerm="SBO:0000176" id="R_MAR07086" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -277707,7 +277711,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07086">
+            <rdf:Description rdf:about="#R_MAR07086">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R07029"/>
@@ -277719,14 +277723,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00548c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM00548c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="2" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02580c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02580c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07087" sboTerm="SBO:0000176" id="MAR07087" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07087" sboTerm="SBO:0000176" id="R_MAR07087" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -277734,7 +277738,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07087">
+            <rdf:Description rdf:about="#R_MAR07087">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R07030"/>
@@ -277746,15 +277750,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02580c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02580c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00539c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00539c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07088" sboTerm="SBO:0000176" id="MAR07088" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07088" sboTerm="SBO:0000176" id="R_MAR07088" name="1,1-dichloroethylene, NADPH:oxygen oxidoreductase (RH-hydroxylating or -epoxidizing)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -277762,7 +277766,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07088">
+            <rdf:Description rdf:about="#R_MAR07088">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.14.1"/>
@@ -277775,15 +277779,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00228c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00228c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00568c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00568c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -277793,7 +277797,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07089" sboTerm="SBO:0000176" id="MAR07089" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07089" sboTerm="SBO:0000176" id="R_MAR07089" name="S-(2,2-dichloro-1-hydroxy)ethyl-glutathione 2,2-dichloroacetaldehyde-lyase (glutathione-forming)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -277801,7 +277805,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07089">
+            <rdf:Description rdf:about="#R_MAR07089">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.5.1.18"/>
@@ -277814,12 +277818,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00568c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02026c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00568c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02853c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02853c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -277831,7 +277835,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07090" sboTerm="SBO:0000176" id="MAR07090" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07090" sboTerm="SBO:0000176" id="R_MAR07090" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -277839,7 +277843,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07090">
+            <rdf:Description rdf:about="#R_MAR07090">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R07095"/>
@@ -277851,14 +277855,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00568c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00568c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00567c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00567c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07091" sboTerm="SBO:0000176" id="MAR07091" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07091" sboTerm="SBO:0000176" id="R_MAR07091" name="1,1-dichloroethylene, NADPH:oxygen oxidoreductase (RH-hydroxylating or -epoxidizing)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -277866,7 +277870,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07091">
+            <rdf:Description rdf:about="#R_MAR07091">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.14.1"/>
@@ -277879,15 +277883,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00228c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00228c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00227c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00227c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -277897,7 +277901,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07092" sboTerm="SBO:0000176" id="MAR07092" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07092" sboTerm="SBO:0000176" id="R_MAR07092" name="1,1-dichloroethylene-epoxide:glutathione S-(chloroepoxyethyl)transferase [2-(S-glutathionyl)acetyl-chloride-forming]" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -277905,7 +277909,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07092">
+            <rdf:Description rdf:about="#R_MAR07092">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.5.1.18"/>
@@ -277918,12 +277922,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00227c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02026c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00227c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00565c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02144c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00565c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02144c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -277935,7 +277939,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07093" sboTerm="SBO:0000176" id="MAR07093" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07093" sboTerm="SBO:0000176" id="R_MAR07093" name="2-(S-glutathionyl)acetyl-chloride:glutathione 2-(S-glutathionyl)acetyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -277943,7 +277947,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07093">
+            <rdf:Description rdf:about="#R_MAR07093">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.5.1.18"/>
@@ -277956,12 +277960,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00565c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02026c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00565c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00566c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02144c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00566c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02144c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -277973,7 +277977,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07094" sboTerm="SBO:0000176" id="MAR07094" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07094" sboTerm="SBO:0000176" id="R_MAR07094" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -277981,7 +277985,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07094">
+            <rdf:Description rdf:about="#R_MAR07094">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R07097"/>
@@ -277993,16 +277997,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00565c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00565c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00676c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01442c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00676c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01442c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07095" sboTerm="SBO:0000176" id="MAR07095" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07095" sboTerm="SBO:0000176" id="R_MAR07095" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -278010,7 +278014,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07095">
+            <rdf:Description rdf:about="#R_MAR07095">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R07124"/>
@@ -278022,15 +278026,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00566c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00566c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00676c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02026c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00676c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07096" sboTerm="SBO:0000176" id="MAR07096" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07096" sboTerm="SBO:0000176" id="R_MAR07096" name="1,1-dichloroethylene, NADPH:oxygen oxidoreductase (RH-hydroxylating or -epoxidizing)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -278038,7 +278042,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07096">
+            <rdf:Description rdf:about="#R_MAR07096">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.14.1"/>
@@ -278051,15 +278055,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00228c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00228c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01444c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01444c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -278069,7 +278073,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07097" sboTerm="SBO:0000176" id="MAR07097" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07097" sboTerm="SBO:0000176" id="R_MAR07097" name="chloroacetyl-chloride:glutathione S-chloroacetyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -278077,7 +278081,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07097">
+            <rdf:Description rdf:about="#R_MAR07097">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.5.1.18"/>
@@ -278090,12 +278094,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01444c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02026c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01444c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02144c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02854c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02144c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02854c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -278107,7 +278111,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07098" sboTerm="SBO:0000176" id="MAR07098" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07098" sboTerm="SBO:0000176" id="R_MAR07098" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -278115,7 +278119,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07098">
+            <rdf:Description rdf:about="#R_MAR07098">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R07096"/>
@@ -278127,16 +278131,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01444c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01444c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01442c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01443c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01442c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01443c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="2" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07099" sboTerm="SBO:0000176" id="MAR07099" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07099" sboTerm="SBO:0000176" id="R_MAR07099" name="1,2-dibromoethane,NADPH:oxygen oxidoreductase (RH-hydroxylating or -epoxidizing)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -278144,7 +278148,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07099">
+            <rdf:Description rdf:about="#R_MAR07099">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.14.1"/>
@@ -278157,21 +278161,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00242c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00242c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00636c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02143c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00636c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02143c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Cyp18a1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07100" sboTerm="SBO:0000176" id="MAR07100" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07100" sboTerm="SBO:0000176" id="R_MAR07100" name="2-bromoacetaldehyde:glutathione S-(formylmethyl)transferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -278179,7 +278183,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07100">
+            <rdf:Description rdf:about="#R_MAR07100">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.5.1.18"/>
@@ -278192,13 +278196,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00636c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02026c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00636c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02143c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02861c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02143c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02861c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -278210,7 +278214,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07103" sboTerm="SBO:0000176" id="MAR07103" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07103" sboTerm="SBO:0000176" id="R_MAR07103" name="1,2-dibromoethane:glutathione ethylenetransferase (episulfonium-forming)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -278218,7 +278222,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07103">
+            <rdf:Description rdf:about="#R_MAR07103">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R07113"/>
@@ -278230,13 +278234,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00242c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02026c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00242c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01978c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02143c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01978c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02143c" stoichiometry="2" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -278249,7 +278253,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07104" sboTerm="SBO:0000176" id="MAR07104" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07104" sboTerm="SBO:0000176" id="R_MAR07104" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -278257,7 +278261,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07104">
+            <rdf:Description rdf:about="#R_MAR07104">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R07117"/>
@@ -278269,14 +278273,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01978c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01978c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02855c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02855c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07106" sboTerm="SBO:0000176" id="MAR07106" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07106" sboTerm="SBO:0000176" id="R_MAR07106" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -278284,7 +278288,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07106">
+            <rdf:Description rdf:about="#R_MAR07106">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R07120"/>
@@ -278296,14 +278300,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM02861c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM02861c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02855c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02855c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07688" sboTerm="SBO:0000176" id="MAR07688" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07688" sboTerm="SBO:0000176" id="R_MAR07688" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -278311,7 +278315,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07688">
+            <rdf:Description rdf:about="#R_MAR07688">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.8.2.1"/>
@@ -278324,19 +278328,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02682c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02754c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02682c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02754c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01021c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02681c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01021c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02681c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="St1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08032" sboTerm="SBO:0000176" id="MAR08032" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08032" sboTerm="SBO:0000176" id="R_MAR08032" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -278344,7 +278348,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08032">
+            <rdf:Description rdf:about="#R_MAR08032">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.13.-"/>
@@ -278357,21 +278361,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01647c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01647c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00998c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00998c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Cyp18a1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08034" sboTerm="SBO:0000176" id="MAR08034" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08034" sboTerm="SBO:0000176" id="R_MAR08034" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -278379,7 +278383,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08034">
+            <rdf:Description rdf:about="#R_MAR08034">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.13.-"/>
@@ -278392,21 +278396,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02754c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02754c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01019c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01019c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Cyp18a1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08040" sboTerm="SBO:0000176" id="MAR08040" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08040" sboTerm="SBO:0000176" id="R_MAR08040" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -278414,7 +278418,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08040">
+            <rdf:Description rdf:about="#R_MAR08040">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.14.1"/>
@@ -278427,21 +278431,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01617c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01617c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03113c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03113c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Cyp18a1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08043" sboTerm="SBO:0000176" id="MAR08043" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08043" sboTerm="SBO:0000176" id="R_MAR08043" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -278449,7 +278453,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08043">
+            <rdf:Description rdf:about="#R_MAR08043">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.14.1"/>
@@ -278462,21 +278466,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01344c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="0.5" constant="true"/>
+          <speciesReference species="M_MAM01344c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="0.5" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01768c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02470c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01768c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02470c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Cyp18a1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08046" sboTerm="SBO:0000176" id="MAR08046" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08046" sboTerm="SBO:0000176" id="R_MAR08046" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -278484,7 +278488,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08046">
+            <rdf:Description rdf:about="#R_MAR08046">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.13.-"/>
@@ -278497,21 +278501,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02653c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02653c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01109c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01109c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Cyp18a1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08049" sboTerm="SBO:0000176" id="MAR08049" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08049" sboTerm="SBO:0000176" id="R_MAR08049" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -278519,7 +278523,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08049">
+            <rdf:Description rdf:about="#R_MAR08049">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.14.1"/>
@@ -278532,21 +278536,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02673c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02673c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01163c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01163c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Cyp18a1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08052" sboTerm="SBO:0000176" id="MAR08052" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08052" sboTerm="SBO:0000176" id="R_MAR08052" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -278554,7 +278558,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08052">
+            <rdf:Description rdf:about="#R_MAR08052">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.13.-"/>
@@ -278567,21 +278571,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03001c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03001c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01007c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01007c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Cyp18a1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08055" sboTerm="SBO:0000176" id="MAR08055" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08055" sboTerm="SBO:0000176" id="R_MAR08055" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -278589,7 +278593,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08055">
+            <rdf:Description rdf:about="#R_MAR08055">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.13.32"/>
@@ -278602,15 +278606,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02587c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02587c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02153c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02153c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -278619,7 +278623,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08596" sboTerm="SBO:0000176" id="MAR08596" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08596" sboTerm="SBO:0000176" id="R_MAR08596" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -278627,7 +278631,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08596">
+            <rdf:Description rdf:about="#R_MAR08596">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.13.80"/>
@@ -278640,21 +278644,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02386c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02386c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00001c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00001c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Cyp18a1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08598" sboTerm="SBO:0000176" id="MAR08598" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08598" sboTerm="SBO:0000176" id="R_MAR08598" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -278662,7 +278666,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08598">
+            <rdf:Description rdf:about="#R_MAR08598">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/P4502C93"/>
@@ -278674,21 +278678,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02386c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02386c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02712c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02712c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Cyp18a1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08601" sboTerm="SBO:0000176" id="MAR08601" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08601" sboTerm="SBO:0000176" id="R_MAR08601" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -278696,7 +278700,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08601">
+            <rdf:Description rdf:about="#R_MAR08601">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/P4502C94"/>
@@ -278708,21 +278712,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00002c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00002c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01326c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01326c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Cyp18a1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06535" sboTerm="SBO:0000176" id="MAR06535" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06535" sboTerm="SBO:0000176" id="R_MAR06535" name="chloride:hydrogen-peroxide oxidoreductase (hypochlorite-forming)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -278731,7 +278735,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06535">
+            <rdf:Description rdf:about="#R_MAR06535">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.11.1.7"/>
@@ -278744,13 +278748,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02156c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02156c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01442c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02041c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01442c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -278759,7 +278763,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06536" sboTerm="SBO:0000176" id="MAR06536" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06536" sboTerm="SBO:0000176" id="R_MAR06536" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -278768,7 +278772,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06536">
+            <rdf:Description rdf:about="#R_MAR06536">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.11.1.7"/>
@@ -278780,13 +278784,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02156c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02588c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02156c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02588c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02591c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02591c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -278795,7 +278799,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR09569" sboTerm="SBO:0000176" id="MAR09569" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09569" sboTerm="SBO:0000176" id="R_MAR09569" name="4-nitrophenyl phosphate phosphohydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -278804,7 +278808,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09569">
+            <rdf:Description rdf:about="#R_MAR09569">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.3.1"/>
@@ -278820,15 +278824,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01020e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01020e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02751e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02754e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02754e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03955" sboTerm="SBO:0000176" id="MAR03955" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03955" sboTerm="SBO:0000176" id="R_MAR03955" name="carbonate hydro-lyase (carbon-dioxide-forming)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -278836,7 +278840,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03955">
+            <rdf:Description rdf:about="#R_MAR03955">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.1"/>
@@ -278852,12 +278856,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01596c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01596c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -278869,7 +278873,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03984" sboTerm="SBO:0000176" id="MAR03984" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03984" sboTerm="SBO:0000176" id="R_MAR03984" name="hydrogen-peroxide:hydrogen-peroxide oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -278878,7 +278882,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03984">
+            <rdf:Description rdf:about="#R_MAR03984">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.11.1.6"/>
@@ -278894,11 +278898,11 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02041x" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02041x" stoichiometry="2" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040x" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02630x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040x" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02630x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -278907,7 +278911,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04201" sboTerm="SBO:0000176" id="MAR04201" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04201" sboTerm="SBO:0000176" id="R_MAR04201" name="methanol:hydrogen-peroxide oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -278916,7 +278920,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04201">
+            <rdf:Description rdf:about="#R_MAR04201">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.11.1.6"/>
@@ -278933,12 +278937,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02041c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02470c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02470c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01831c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01831c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -278948,7 +278952,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04202" sboTerm="SBO:0000176" id="MAR04202" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04202" sboTerm="SBO:0000176" id="R_MAR04202" name="methanol:NAD+ oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -278956,7 +278960,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04202">
+            <rdf:Description rdf:about="#R_MAR04202">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.244"/>
@@ -278972,13 +278976,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02470c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02470c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01831c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01831c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -278987,7 +278991,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05127" sboTerm="SBO:0000176" id="MAR05127" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05127" sboTerm="SBO:0000176" id="R_MAR05127" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -278995,7 +278999,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#meta_MAR05127">
+            <rdf:Description rdf:about="#meta_R_MAR05127">
               <bqbiol:is>
                 <rdf:Bag/>
               </bqbiol:is>
@@ -279003,14 +279007,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02579c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02579c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02578c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02578c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05128" sboTerm="SBO:0000176" id="MAR05128" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05128" sboTerm="SBO:0000176" id="R_MAR05128" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -279018,7 +279022,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05128">
+            <rdf:Description rdf:about="#R_MAR05128">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_nh4_e"/>
@@ -279029,14 +279033,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02579e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02579e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02578e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02578e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05363" sboTerm="SBO:0000176" id="MAR05363" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05363" sboTerm="SBO:0000176" id="R_MAR05363" name="Triphosphate phosphohydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -279045,7 +279049,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05363">
+            <rdf:Description rdf:about="#R_MAR05363">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.6.1.25"/>
@@ -279059,16 +279063,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03057c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03057c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05406" sboTerm="SBO:0000176" id="MAR05406" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05406" sboTerm="SBO:0000176" id="R_MAR05406" name="carbonate hydro-lyase (carbon-dioxide-forming)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -279077,7 +279081,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05406">
+            <rdf:Description rdf:about="#R_MAR05406">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.1"/>
@@ -279091,11 +279095,11 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01596c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01596c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01421c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01421c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -279107,7 +279111,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05409" sboTerm="SBO:0000176" id="MAR05409" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05409" sboTerm="SBO:0000176" id="R_MAR05409" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -279115,7 +279119,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05409">
+            <rdf:Description rdf:about="#R_MAR05409">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_5409"/>
@@ -279125,14 +279129,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01421e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01421e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07794" sboTerm="SBO:0000176" id="MAR07794" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07794" sboTerm="SBO:0000176" id="R_MAR07794" name="diphosphate phosphohydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -279140,7 +279144,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07794">
+            <rdf:Description rdf:about="#R_MAR07794">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PPAn"/>
@@ -279155,12 +279159,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759n" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751n" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02039n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751n" stoichiometry="2" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -279168,7 +279172,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08617" sboTerm="SBO:0000176" id="MAR08617" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08617" sboTerm="SBO:0000176" id="R_MAR08617" name="Triphosphate phosphohydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -279176,7 +279180,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08617">
+            <rdf:Description rdf:about="#R_MAR08617">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PPA2m"/>
@@ -279189,16 +279193,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03057m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03057m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08749" sboTerm="SBO:0000176" id="MAR08749" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08749" sboTerm="SBO:0000176" id="R_MAR08749" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -279206,7 +279210,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08749">
+            <rdf:Description rdf:about="#R_MAR08749">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/H2CO3D2"/>
@@ -279218,14 +279222,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01421c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01421c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08750" sboTerm="SBO:0000176" id="MAR08750" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08750" sboTerm="SBO:0000176" id="R_MAR08750" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -279233,7 +279237,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08750">
+            <rdf:Description rdf:about="#R_MAR08750">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/H2CO3D2m"/>
@@ -279245,14 +279249,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01421m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01421m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08751" sboTerm="SBO:0000176" id="MAR08751" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08751" sboTerm="SBO:0000176" id="R_MAR08751" name="carbonate hydro-lyase (carbon-dioxide-forming)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -279260,7 +279264,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08751">
+            <rdf:Description rdf:about="#R_MAR08751">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.1"/>
@@ -279274,17 +279278,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01596m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01596m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01421m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01421m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CAH1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08752" sboTerm="SBO:0000176" id="MAR08752" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08752" sboTerm="SBO:0000176" id="R_MAR08752" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -279292,7 +279296,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08752">
+            <rdf:Description rdf:about="#R_MAR08752">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.11.1.7"/>
@@ -279309,12 +279313,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02041l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02470l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02470l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01831l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040l" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01831l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="2" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -279324,7 +279328,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07741" sboTerm="SBO:0000176" id="MAR07741" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07741" sboTerm="SBO:0000176" id="R_MAR07741" name="Ferredoxin:NADP+ oxidoreductase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -279332,7 +279336,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07741">
+            <rdf:Description rdf:about="#R_MAR07741">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.18.1.2"/>
@@ -279345,19 +279349,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02828m" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02828m" stoichiometry="2" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02555m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02665m" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02555m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02665m" stoichiometry="2" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="dare"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR09464" sboTerm="SBO:0000176" id="MAR09464" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09464" sboTerm="SBO:0000176" id="R_MAR09464" name="Dextrin 6-alpha-D-glucanohydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -279365,7 +279369,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09464">
+            <rdf:Description rdf:about="#R_MAR09464">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.2.1.3"/>
@@ -279379,12 +279383,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01678c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01678c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01677c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01965c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01677c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01965c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -279395,7 +279399,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR09466" sboTerm="SBO:0000176" id="MAR09466" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09466" sboTerm="SBO:0000176" id="R_MAR09466" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -279404,7 +279408,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09466">
+            <rdf:Description rdf:about="#R_MAR09466">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.1.-"/>
@@ -279416,13 +279420,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00520c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00520c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01848c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01848c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -279432,7 +279436,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR09467" sboTerm="SBO:0000176" id="MAR09467" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09467" sboTerm="SBO:0000176" id="R_MAR09467" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -279441,7 +279445,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09467">
+            <rdf:Description rdf:about="#R_MAR09467">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.1.-"/>
@@ -279453,13 +279457,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01847c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01847c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01846c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01846c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -279469,7 +279473,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR09469" sboTerm="SBO:0000176" id="MAR09469" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09469" sboTerm="SBO:0000176" id="R_MAR09469" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -279478,7 +279482,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09469">
+            <rdf:Description rdf:about="#R_MAR09469">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.4.24.15"/>
@@ -279490,18 +279494,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01763c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01763c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01762c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01764c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01762c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01764c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG11771"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR09470" sboTerm="SBO:0000176" id="MAR09470" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09470" sboTerm="SBO:0000176" id="R_MAR09470" name="L-iditol:NAD+ 2-oxidoreductase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -279510,7 +279514,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09470">
+            <rdf:Description rdf:about="#R_MAR09470">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.14"/>
@@ -279523,16 +279527,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02417c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02417c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02383c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02383c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09473" sboTerm="SBO:0000176" id="MAR09473" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09473" sboTerm="SBO:0000176" id="R_MAR09473" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -279541,7 +279545,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09473">
+            <rdf:Description rdf:about="#R_MAR09473">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.4.17.1"/>
@@ -279554,12 +279558,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02570c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02570c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02360c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02569c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02360c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02569c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -279570,7 +279574,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR09475" sboTerm="SBO:0000176" id="MAR09475" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09475" sboTerm="SBO:0000176" id="R_MAR09475" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -279579,7 +279583,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09475">
+            <rdf:Description rdf:about="#R_MAR09475">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.4.21.35"/>
@@ -279590,13 +279594,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02916c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02916c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01307c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01986c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02915c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01307c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02915c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -279605,7 +279609,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR09476" sboTerm="SBO:0000176" id="MAR09476" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09476" sboTerm="SBO:0000176" id="R_MAR09476" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -279614,7 +279618,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09476">
+            <rdf:Description rdf:about="#R_MAR09476">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.4.19.6"/>
@@ -279625,12 +279629,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01127c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02126c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01127c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02126c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -279639,7 +279643,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR09477" sboTerm="SBO:0000176" id="MAR09477" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09477" sboTerm="SBO:0000176" id="R_MAR09477" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -279648,7 +279652,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09477">
+            <rdf:Description rdf:about="#R_MAR09477">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.4.15.1"/>
@@ -279660,12 +279664,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02551c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02551c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02429c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02550c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02429c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02550c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -279674,7 +279678,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR09478" sboTerm="SBO:0000176" id="MAR09478" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09478" sboTerm="SBO:0000176" id="R_MAR09478" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -279683,7 +279687,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09478">
+            <rdf:Description rdf:about="#R_MAR09478">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.4.15.-"/>
@@ -279695,15 +279699,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01387c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01387c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01386c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02184c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01386c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02184c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09479" sboTerm="SBO:0000176" id="MAR09479" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09479" sboTerm="SBO:0000176" id="R_MAR09479" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -279712,7 +279716,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09479">
+            <rdf:Description rdf:about="#R_MAR09479">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.4.15.-"/>
@@ -279724,15 +279728,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02563c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02563c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02184c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02562c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02184c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02562c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09480" sboTerm="SBO:0000176" id="MAR09480" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09480" sboTerm="SBO:0000176" id="R_MAR09480" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -279741,7 +279745,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09480">
+            <rdf:Description rdf:about="#R_MAR09480">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.4.15.-"/>
@@ -279753,15 +279757,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01348c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01347c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02724c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01347c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02724c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09481" sboTerm="SBO:0000176" id="MAR09481" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09481" sboTerm="SBO:0000176" id="R_MAR09481" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -279770,7 +279774,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09481">
+            <rdf:Description rdf:about="#R_MAR09481">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.4.21.39"/>
@@ -279782,19 +279786,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02318c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02318c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02315c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02360c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02724c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02315c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02360c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02724c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG32376"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR09482" sboTerm="SBO:0000176" id="MAR09482" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09482" sboTerm="SBO:0000176" id="R_MAR09482" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -279803,7 +279807,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09482">
+            <rdf:Description rdf:about="#R_MAR09482">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.4.17.1"/>
@@ -279816,12 +279820,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02318c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02318c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02316c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02360c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02316c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02360c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -279832,7 +279836,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR09483" sboTerm="SBO:0000176" id="MAR09483" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09483" sboTerm="SBO:0000176" id="R_MAR09483" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -279841,7 +279845,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09483">
+            <rdf:Description rdf:about="#R_MAR09483">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.4.21.59"/>
@@ -279852,16 +279856,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040e" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02318e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040e" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02318e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02314e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02317e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02360e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02314e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02317e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02360e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09485" sboTerm="SBO:0000176" id="MAR09485" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09485" sboTerm="SBO:0000176" id="R_MAR09485" name="[1,4-(N-Acetyl-beta-D-glucosaminyl)]n glycanohydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -279869,7 +279873,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09485">
+            <rdf:Description rdf:about="#R_MAR09485">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.2.1.14"/>
@@ -279884,12 +279888,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01437c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01437c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01436c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02527c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01436c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02527c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -279898,7 +279902,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR09487" sboTerm="SBO:0000176" id="MAR09487" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09487" sboTerm="SBO:0000176" id="R_MAR09487" name="NAD+:poly(adenosine diphosphate D-ribose)ADP-D-ribosyltransferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -279906,7 +279910,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09487">
+            <rdf:Description rdf:about="#R_MAR09487">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.2.30"/>
@@ -279919,13 +279923,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00136c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00136c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00137c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02583c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00137c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02583c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -279935,7 +279939,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR09488" sboTerm="SBO:0000176" id="MAR09488" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09488" sboTerm="SBO:0000176" id="R_MAR09488" name="ATP:phosphorylase-b phosphotransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -279943,7 +279947,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09488">
+            <rdf:Description rdf:about="#R_MAR09488">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.11.19"/>
@@ -279956,15 +279960,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00193c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM01371c" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM00193c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="4" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00192c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01285c" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM00192c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="4" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09489" sboTerm="SBO:0000176" id="MAR09489" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09489" sboTerm="SBO:0000176" id="R_MAR09489" name="[Phosphorylase a] phosphohydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -279972,7 +279976,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09489">
+            <rdf:Description rdf:about="#R_MAR09489">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.3.17"/>
@@ -279985,16 +279989,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00192c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM00192c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="4" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00193c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="4" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM00193c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="4" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09490" sboTerm="SBO:0000176" id="MAR09490" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09490" sboTerm="SBO:0000176" id="R_MAR09490" name="Ubiquitin-C-terminal-thiolester hydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -280002,7 +280006,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09490">
+            <rdf:Description rdf:about="#R_MAR09490">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.2.15"/>
@@ -280015,13 +280019,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03104c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03104c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02988c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03105c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02988c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03105c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -280038,7 +280042,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR09491" sboTerm="SBO:0000176" id="MAR09491" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09491" sboTerm="SBO:0000176" id="R_MAR09491" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 2</p>
@@ -280046,7 +280050,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09491">
+            <rdf:Description rdf:about="#R_MAR09491">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.3.2.19"/>
@@ -280059,14 +280063,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00204c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03105c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00204c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03105c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00214c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01334c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00214c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -280164,7 +280168,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR09492" sboTerm="SBO:0000176" id="MAR09492" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09492" sboTerm="SBO:0000176" id="R_MAR09492" name="Peptidylproline cis-trans-isomerase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -280172,7 +280176,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09492">
+            <rdf:Description rdf:about="#R_MAR09492">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/5.2.1.8"/>
@@ -280185,10 +280189,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02709c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02709c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02710c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02710c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -280198,7 +280202,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR09493" sboTerm="SBO:0000176" id="MAR09493" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09493" sboTerm="SBO:0000176" id="R_MAR09493" name="ATP:myosin-light-chain O-phosphotransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -280206,7 +280210,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09493">
+            <rdf:Description rdf:about="#R_MAR09493">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.11.18"/>
@@ -280219,12 +280223,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00190c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00190c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00191c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00191c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -280232,7 +280236,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR09494" sboTerm="SBO:0000176" id="MAR09494" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09494" sboTerm="SBO:0000176" id="R_MAR09494" name="[Myosin-light-chain]-phosphate phosphohydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -280240,7 +280244,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09494">
+            <rdf:Description rdf:about="#R_MAR09494">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.3.53"/>
@@ -280253,16 +280257,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00191c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00191c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00190c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00190c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09495" sboTerm="SBO:0000176" id="MAR09495" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09495" sboTerm="SBO:0000176" id="R_MAR09495" name="Acetyl-CoA:histone acetyltransferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -280270,7 +280274,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09495">
+            <rdf:Description rdf:about="#R_MAR09495">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.48"/>
@@ -280283,13 +280287,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02128c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02128c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02127c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02127c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -280312,7 +280316,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR09496" sboTerm="SBO:0000176" id="MAR09496" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09496" sboTerm="SBO:0000176" id="R_MAR09496" name="Protein-glutamine:amine gamma-glutamyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -280320,7 +280324,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09496">
+            <rdf:Description rdf:about="#R_MAR09496">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.2.13"/>
@@ -280333,18 +280337,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00201c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01310c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00201c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01310c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00207c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02579c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00207c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02579c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Tg"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR09498" sboTerm="SBO:0000176" id="MAR09498" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09498" sboTerm="SBO:0000176" id="R_MAR09498" name="DNA-6-O-methylguanine:protein-L-cysteine S-methyltransferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -280352,7 +280356,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09498">
+            <rdf:Description rdf:about="#R_MAR09498">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.1.1.63"/>
@@ -280365,18 +280369,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00200c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01719c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00200c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01719c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00216c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01720c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00216c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01720c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="agt"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR09499" sboTerm="SBO:0000176" id="MAR09499" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09499" sboTerm="SBO:0000176" id="R_MAR09499" name="S-palmitoylprotein hydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -280384,7 +280388,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09499">
+            <rdf:Description rdf:about="#R_MAR09499">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.2.22"/>
@@ -280397,13 +280401,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02918c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02918c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00200c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02674c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00200c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02674c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -280413,7 +280417,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR09500" sboTerm="SBO:0000176" id="MAR09500" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09500" sboTerm="SBO:0000176" id="R_MAR09500" name="S-Adenosyl-L-methionine:protein-L-isoaspartate O-methyltransferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -280421,7 +280425,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09500">
+            <rdf:Description rdf:about="#R_MAR09500">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.1.1.77"/>
@@ -280434,19 +280438,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00203c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02871c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00203c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02871c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00202c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02877c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00202c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02877c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Pcmt"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR09501" sboTerm="SBO:0000176" id="MAR09501" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09501" sboTerm="SBO:0000176" id="R_MAR09501" name="NADPH:ferricytochrome oxidoreductase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -280454,7 +280458,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09501">
+            <rdf:Description rdf:about="#R_MAR09501">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.6.2.4"/>
@@ -280467,19 +280471,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01826c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01826c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01824c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01824c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Cpr"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR09502" sboTerm="SBO:0000176" id="MAR09502" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09502" sboTerm="SBO:0000176" id="R_MAR09502" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -280487,7 +280491,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09502">
+            <rdf:Description rdf:about="#R_MAR09502">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.4.21.26"/>
@@ -280498,19 +280502,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02669c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02669c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01985c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02668c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01985c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02668c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG5355"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR09503" sboTerm="SBO:0000176" id="MAR09503" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09503" sboTerm="SBO:0000176" id="R_MAR09503" name="ATP:rhodopsin phosphotransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -280518,7 +280522,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09503">
+            <rdf:Description rdf:about="#R_MAR09503">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.11.14"/>
@@ -280531,18 +280535,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02840c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02840c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02743c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02743c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Gprk2"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR09505" sboTerm="SBO:0000176" id="MAR09505" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09505" sboTerm="SBO:0000176" id="R_MAR09505" name="alpha-tubulin:L-tyrosine ligase (ADP-forming)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -280550,7 +280554,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09505">
+            <rdf:Description rdf:about="#R_MAR09505">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.3.2.25"/>
@@ -280563,21 +280567,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01317c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01317c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01676c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03101c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01676c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03101c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Br140"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR09506" sboTerm="SBO:0000176" id="MAR09506" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09506" sboTerm="SBO:0000176" id="R_MAR09506" name="Polynucleotide 3&apos;-phosphohydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -280585,7 +280589,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09506">
+            <rdf:Description rdf:about="#R_MAR09506">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.3.32"/>
@@ -280598,18 +280602,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00915c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00915c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02755c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02755c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="PNKP"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR09507" sboTerm="SBO:0000176" id="MAR09507" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09507" sboTerm="SBO:0000176" id="R_MAR09507" name="5&apos;-Phosphopolynucleotide 5&apos;-phosphohydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -280617,7 +280621,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09507">
+            <rdf:Description rdf:about="#R_MAR09507">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.3.33"/>
@@ -280630,15 +280634,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01129c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01129c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02755c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02755c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09508" sboTerm="SBO:0000176" id="MAR09508" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09508" sboTerm="SBO:0000176" id="R_MAR09508" name="GTP:mRNA guanylyltransferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -280646,7 +280650,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09508">
+            <rdf:Description rdf:about="#R_MAR09508">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.7.50"/>
@@ -280659,15 +280663,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00096c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02034c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00096c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02034c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01864c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01864c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09509" sboTerm="SBO:0000176" id="MAR09509" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09509" sboTerm="SBO:0000176" id="R_MAR09509" name="S-adenosyl-L-methionine:mRNA (guanine-N7-)-methyltransferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -280675,7 +280679,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09509">
+            <rdf:Description rdf:about="#R_MAR09509">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.1.1.56"/>
@@ -280688,18 +280692,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01864c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02877c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01864c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02877c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02438c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02871c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02438c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02871c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Rnmt"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR09510" sboTerm="SBO:0000176" id="MAR09510" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09510" sboTerm="SBO:0000176" id="R_MAR09510" name="S-adenosyl-L-methionine:5-(N7-methyl 5-triphosphoguanosine)-(purine-ribonucleotide)-[mRNA] 2-O-methyltransferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -280707,7 +280711,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09510">
+            <rdf:Description rdf:about="#R_MAR09510">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.1.1.57"/>
@@ -280720,19 +280724,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02437c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02871c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02437c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02871c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02438c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02877c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02438c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02877c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Cmtr1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR09511" sboTerm="SBO:0000176" id="MAR09511" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09511" sboTerm="SBO:0000176" id="R_MAR09511" name="S-Adenosyl-L-methionine:mRNA (2&apos;-O-methyladenosine-N6-)-methyltransferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -280740,7 +280744,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09511">
+            <rdf:Description rdf:about="#R_MAR09511">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.1.1.62"/>
@@ -280753,19 +280757,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02436c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02871c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02436c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02871c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02435c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02877c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02435c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02877c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Mettl3"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR09512" sboTerm="SBO:0000176" id="MAR09512" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09512" sboTerm="SBO:0000176" id="R_MAR09512" name="Tetradecanoyl-CoA:glycylpeptide N-tetradecanoyltransferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -280773,7 +280777,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09512">
+            <rdf:Description rdf:about="#R_MAR09512">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.97"/>
@@ -280786,18 +280790,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02627c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02627c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02005c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02495c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02005c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02495c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Nmt"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR09513" sboTerm="SBO:0000176" id="MAR09513" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09513" sboTerm="SBO:0000176" id="R_MAR09513" name="Nomega,Nomega&apos;-dimethyl-L-arginine dimethylamidohydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -280805,7 +280809,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09513">
+            <rdf:Description rdf:about="#R_MAR09513">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.5.3.18"/>
@@ -280818,18 +280822,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02577c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02577c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01588c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01707c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01588c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01707c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG1764"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR09514" sboTerm="SBO:0000176" id="MAR09514" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09514" sboTerm="SBO:0000176" id="R_MAR09514" name="N,N,N-trimethylamine,NADPH:oxygen oxidoreductase (N-oxide-forming)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -280837,7 +280841,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09514">
+            <rdf:Description rdf:about="#R_MAR09514">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.13.8"/>
@@ -280850,17 +280854,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03053c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03053c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03054c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03054c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09516" sboTerm="SBO:0000176" id="MAR09516" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09516" sboTerm="SBO:0000176" id="R_MAR09516" name="[Pyruvate dehydrogenase (lipoamide)]-phosphate phosphohydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -280868,7 +280872,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09516">
+            <rdf:Description rdf:about="#R_MAR09516">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.3.43"/>
@@ -280881,18 +280885,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00220c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00220c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00219c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00219c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Pdp"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR09517" sboTerm="SBO:0000176" id="MAR09517" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09517" sboTerm="SBO:0000176" id="R_MAR09517" name="ATP:[pyruvate dehydrogenase (lipoamide)] phosphotransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -280900,7 +280904,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09517">
+            <rdf:Description rdf:about="#R_MAR09517">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.11.2"/>
@@ -280913,19 +280917,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00219c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00219c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00220c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00220c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Pdk"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR09518" sboTerm="SBO:0000176" id="MAR09518" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09518" sboTerm="SBO:0000176" id="R_MAR09518" name="tRNA-guanosine34:queuine tRNA-D-ribosyltransferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -280933,7 +280937,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09518">
+            <rdf:Description rdf:about="#R_MAR09518">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.2.29"/>
@@ -280946,12 +280950,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02037c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03086c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02037c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03086c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02820c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03084c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02820c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03084c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -280960,7 +280964,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR09519" sboTerm="SBO:0000176" id="MAR09519" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09519" sboTerm="SBO:0000176" id="R_MAR09519" name="S-Adenosyl-L-methionine:tRNA guanine N2-methyltransferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -280968,7 +280972,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09519">
+            <rdf:Description rdf:about="#R_MAR09519">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.1.1.214"/>
@@ -280983,13 +280987,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02871c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03061c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02871c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03061c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02877c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03084c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02877c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03084c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -280998,7 +281002,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR09520" sboTerm="SBO:0000176" id="MAR09520" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09520" sboTerm="SBO:0000176" id="R_MAR09520" name="S-Adenosyl-L-methionine:tRNA guanine N7-methyltransferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -281006,7 +281010,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09520">
+            <rdf:Description rdf:about="#R_MAR09520">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.1.1.33"/>
@@ -281019,18 +281023,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02871c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03062c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02871c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03062c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02877c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03084c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02877c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03084c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG4045"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR09521" sboTerm="SBO:0000176" id="MAR09521" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09521" sboTerm="SBO:0000176" id="R_MAR09521" name="S-adenosyl-L-methionine:tRNA 5-methylaminomethyl-2-thiouridine methyltransferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -281038,7 +281042,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09521">
+            <rdf:Description rdf:about="#R_MAR09521">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.8.1.-"/>
@@ -281051,19 +281055,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02871c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03059c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02871c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03059c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02877c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03058c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02877c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03058c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG3021"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR09522" sboTerm="SBO:0000176" id="MAR09522" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09522" sboTerm="SBO:0000176" id="R_MAR09522" name="Aminoacyl-tRNA aminoacylhydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -281071,7 +281075,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09522">
+            <rdf:Description rdf:about="#R_MAR09522">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.29"/>
@@ -281084,12 +281088,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02626c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02626c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02625c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03083c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02625c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03083c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -281098,7 +281102,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR09523" sboTerm="SBO:0000176" id="MAR09523" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09523" sboTerm="SBO:0000176" id="R_MAR09523" name="delta2-isopentenyl-diphosphate:tRNA isopentenyltransferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -281106,7 +281110,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09523">
+            <rdf:Description rdf:about="#R_MAR09523">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.5.1.75"/>
@@ -281119,18 +281123,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02759c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03060c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03060c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01706c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03083c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01706c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03083c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG31381"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR09524" sboTerm="SBO:0000176" id="MAR09524" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09524" sboTerm="SBO:0000176" id="R_MAR09524" name="tRNA-uridine uracilmutase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -281138,7 +281142,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09524">
+            <rdf:Description rdf:about="#R_MAR09524">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/5.4.99.12"/>
@@ -281151,16 +281155,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03085c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03085c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03087c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03087c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Pus1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR09528" sboTerm="SBO:0000176" id="MAR09528" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09528" sboTerm="SBO:0000176" id="R_MAR09528" name="ATP:beta-adrenergic-receptor phosphotransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -281168,7 +281172,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09528">
+            <rdf:Description rdf:about="#R_MAR09528">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.11.15"/>
@@ -281181,19 +281185,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00187c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00187c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02737c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02737c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Gprk1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR09529" sboTerm="SBO:0000176" id="MAR09529" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09529" sboTerm="SBO:0000176" id="R_MAR09529" name="N-Acetylmuramoyl-Ala amidohydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -281201,7 +281205,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09529">
+            <rdf:Description rdf:about="#R_MAR09529">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.5.1.28"/>
@@ -281214,15 +281218,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02542c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02542c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01307c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02541c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01307c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02541c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09530" sboTerm="SBO:0000176" id="MAR09530" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09530" sboTerm="SBO:0000176" id="R_MAR09530" name="N4-(beta-N-Acetyl-D-glucosaminyl)-L-asparagine amidohydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -281230,7 +281234,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09530">
+            <rdf:Description rdf:about="#R_MAR09530">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.5.1.26"/>
@@ -281245,19 +281249,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02513c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02513c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01370c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02521c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01370c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02521c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG1827"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR09531" sboTerm="SBO:0000176" id="MAR09531" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09531" sboTerm="SBO:0000176" id="R_MAR09531" name="N-linked-glycopeptide-(N-acetyl-beta-D-glucosaminyl)-L-asparagine amidohydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -281265,7 +281269,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09531">
+            <rdf:Description rdf:about="#R_MAR09531">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.5.1.52"/>
@@ -281278,18 +281282,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01018c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01018c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02521c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02702c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02521c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02702c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Pngl"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR09532" sboTerm="SBO:0000176" id="MAR09532" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09532" sboTerm="SBO:0000176" id="R_MAR09532" name="Peptide-L-aspartate,2-oxoglutarate:oxygen oxidoreductase (3-hydroxylating)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -281297,7 +281301,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09532">
+            <rdf:Description rdf:about="#R_MAR09532">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.11.16"/>
@@ -281310,20 +281314,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01306c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02702c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01306c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02702c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01596c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02701c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02943c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01596c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02701c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02943c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Asph"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR09534" sboTerm="SBO:0000176" id="MAR09534" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09534" sboTerm="SBO:0000176" id="R_MAR09534" name="Indole-3-acetamide amidohydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -281331,7 +281335,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09534">
+            <rdf:Description rdf:about="#R_MAR09534">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.5.1.4"/>
@@ -281344,19 +281348,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00155c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00155c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02169c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02578c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02169c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02578c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG8839"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR09537" sboTerm="SBO:0000176" id="MAR09537" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09537" sboTerm="SBO:0000176" id="R_MAR09537" name="1-(sn-glycero-3-phospho)-1D-myo-inositol glycerophosphohydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -281364,7 +281368,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09537">
+            <rdf:Description rdf:about="#R_MAR09537">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.4.44"/>
@@ -281377,19 +281381,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02911c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02911c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02171c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02914c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02171c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02914c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG14883"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR09539" sboTerm="SBO:0000176" id="MAR09539" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09539" sboTerm="SBO:0000176" id="R_MAR09539" name="Vitamin K:oxidized-dithiothreitol oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -281397,7 +281401,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09539">
+            <rdf:Description rdf:about="#R_MAR09539">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.4.1"/>
@@ -281410,19 +281414,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02664c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03145c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02664c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03145c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01713c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03144c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01713c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03144c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Vkor"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR09541" sboTerm="SBO:0000176" id="MAR09541" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09541" sboTerm="SBO:0000176" id="R_MAR09541" name="L-arginyl-tRNA(Arg):protein arginyltransferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -281430,7 +281434,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09541">
+            <rdf:Description rdf:about="#R_MAR09541">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.2.8"/>
@@ -281443,19 +281447,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02339c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03064c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02339c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03064c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00196c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02340c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00196c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02340c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Ate1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR09542" sboTerm="SBO:0000176" id="MAR09542" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09542" sboTerm="SBO:0000176" id="R_MAR09542" name="[peptide]-glycine,ascorbate:oxygen oxidoreductase (2-hydroxylating)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -281463,7 +281467,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09542">
+            <rdf:Description rdf:about="#R_MAR09542">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.17.3"/>
@@ -281476,14 +281480,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01655c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02706c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01655c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02706c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01368c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02707c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01368c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02707c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -281492,7 +281496,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR09543" sboTerm="SBO:0000176" id="MAR09543" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09543" sboTerm="SBO:0000176" id="R_MAR09543" name="L-Glutaminyl-peptide gamma-gluramyltransferase (cyclizing)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -281500,7 +281504,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09543">
+            <rdf:Description rdf:about="#R_MAR09543">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.2.5"/>
@@ -281513,17 +281517,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02375c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02375c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01128c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02578c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01128c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02578c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="isoQC"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR09544" sboTerm="SBO:0000176" id="MAR09544" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09544" sboTerm="SBO:0000176" id="R_MAR09544" name="peptide-L-methionine:thioredoxin-disulfide S-oxidoreductase [L-methionine (S)-S-oxide-forming]" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -281531,7 +281535,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09544">
+            <rdf:Description rdf:about="#R_MAR09544">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.8.4.11"/>
@@ -281544,19 +281548,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02666c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02704c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02666c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02704c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02703c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02990c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02703c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02990c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="MsrA"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR09545" sboTerm="SBO:0000176" id="MAR09545" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09545" sboTerm="SBO:0000176" id="R_MAR09545" name="protein-L-lysine:oxygen 6-oxidoreductase (deaminating)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -281564,7 +281568,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09545">
+            <rdf:Description rdf:about="#R_MAR09545">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.4.3.13"/>
@@ -281577,20 +281581,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02708c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02708c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02041c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02579c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02705c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02579c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02705c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Loxl2"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR09546" sboTerm="SBO:0000176" id="MAR09546" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09546" sboTerm="SBO:0000176" id="R_MAR09546" name="RNA-3&apos;-phosphate:RNA ligase (cyclizing, AMP-forming)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -281598,7 +281602,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09546">
+            <rdf:Description rdf:about="#R_MAR09546">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.5.1.4"/>
@@ -281611,13 +281615,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01334c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02849c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02849c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02848c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02848c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -281626,7 +281630,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR09547" sboTerm="SBO:0000176" id="MAR09547" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09547" sboTerm="SBO:0000176" id="R_MAR09547" name="UDP-N-acetyl-D-glucosamine:lysosomal-enzyme N-acetylglucosaminephosphotransferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -281634,7 +281638,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09547">
+            <rdf:Description rdf:about="#R_MAR09547">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.8.17"/>
@@ -281647,18 +281651,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02427c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03111c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02427c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03111c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02428c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03114c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02428c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03114c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG8027"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR09549" sboTerm="SBO:0000176" id="MAR09549" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09549" sboTerm="SBO:0000176" id="R_MAR09549" name="S-Adenosyl-L-methionine:2-(3-carboxy-3-aminopropyl)-L-histidine methyltransferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -281666,7 +281670,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09549">
+            <rdf:Description rdf:about="#R_MAR09549">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.1.1.98"/>
@@ -281679,19 +281683,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02700c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02871c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02700c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02871c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02699c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02877c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02699c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02877c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Dph5"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR09550" sboTerm="SBO:0000176" id="MAR09550" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09550" sboTerm="SBO:0000176" id="R_MAR09550" name="[methionine synthase]-methylcob(I)alamin,S-adenosylhomocysteine:NADP+ oxidoreductase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -281699,7 +281703,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09550">
+            <rdf:Description rdf:about="#R_MAR09550">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.16.1.8"/>
@@ -281712,21 +281716,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00188c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02877c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM00188c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02877c" stoichiometry="2" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00189c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02871c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM00189c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02871c" stoichiometry="2" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG14882"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR09551" sboTerm="SBO:0000176" id="MAR09551" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09551" sboTerm="SBO:0000176" id="R_MAR09551" name="Formyl-L-methionyl peptide amidohydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -281734,7 +281738,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09551">
+            <rdf:Description rdf:about="#R_MAR09551">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.5.1.88"/>
@@ -281747,13 +281751,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01838c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01838c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01833c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02472c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01833c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02472c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -281762,7 +281766,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR09552" sboTerm="SBO:0000176" id="MAR09552" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09552" sboTerm="SBO:0000176" id="R_MAR09552" name="diphospho-myo-inositol-polyphosphate diphosphohydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -281770,7 +281774,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09552">
+            <rdf:Description rdf:about="#R_MAR09552">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.6.1.52"/>
@@ -281783,19 +281787,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01710c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01710c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02493c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02493c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Aps"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR09553" sboTerm="SBO:0000176" id="MAR09553" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09553" sboTerm="SBO:0000176" id="R_MAR09553" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -281803,7 +281807,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09553">
+            <rdf:Description rdf:about="#R_MAR09553">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.11.4"/>
@@ -281816,20 +281820,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01306c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02768c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01306c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02768c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01596c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02767c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02943c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01596c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02767c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02943c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Plod"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR09801" sboTerm="SBO:0000176" id="MAR09801" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09801" sboTerm="SBO:0000176" id="R_MAR09801" name="GTP:5-hydroxy-L-lysine O-phosphotransferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -281837,7 +281841,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09801">
+            <rdf:Description rdf:about="#R_MAR09801">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.1.81"/>
@@ -281850,18 +281854,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02034c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02381c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02034c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02381c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01948c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03167c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01948c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03167c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG31751"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR09807" sboTerm="SBO:0000176" id="MAR09807" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09807" sboTerm="SBO:0000176" id="R_MAR09807" name="(5R)-5-phosphooxy-L-lysine phosphate-lyase (deaminating" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -281869,7 +281873,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09807">
+            <rdf:Description rdf:about="#R_MAR09807">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.3.134"/>
@@ -281882,20 +281886,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03167c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03167c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00631c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02578c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00631c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02578c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG8745"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR09555" sboTerm="SBO:0000176" id="MAR09555" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09555" sboTerm="SBO:0000176" id="R_MAR09555" name="beta-D-Glucosyl-2-coumarinate glucohydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -281903,7 +281907,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09555">
+            <rdf:Description rdf:about="#R_MAR09555">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.2.1.21"/>
@@ -281917,19 +281921,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01581c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01581c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01578c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01965c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01578c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01965c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG9701"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR09556" sboTerm="SBO:0000176" id="MAR09556" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09556" sboTerm="SBO:0000176" id="R_MAR09556" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -281938,7 +281942,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09556">
+            <rdf:Description rdf:about="#R_MAR09556">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.2.1.23"/>
@@ -281951,12 +281955,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02333e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02333e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02332e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02332e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:and>
@@ -281965,7 +281969,7 @@
           </fbc:and>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR09557" sboTerm="SBO:0000176" id="MAR09557" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09557" sboTerm="SBO:0000176" id="R_MAR09557" name="N-acetyl-L-glutamate-5-semialdehyde:NADP+ 5-oxidoreductase (phosphrylating)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -281973,7 +281977,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09557">
+            <rdf:Description rdf:about="#R_MAR09557">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.2.1.41"/>
@@ -281987,20 +281991,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02537m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02537m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02535m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02535m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="P5CS"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR09558" sboTerm="SBO:0000176" id="MAR09558" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09558" sboTerm="SBO:0000176" id="R_MAR09558" name="2-phosphoglycolate phosphohydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -282008,7 +282012,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09558">
+            <rdf:Description rdf:about="#R_MAR09558">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.3.18"/>
@@ -282024,18 +282028,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00675c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00675c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01998c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01998c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG5567"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR09559" sboTerm="SBO:0000176" id="MAR09559" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09559" sboTerm="SBO:0000176" id="R_MAR09559" name="CTP:choline-phosphate cytidylyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -282043,7 +282047,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09559">
+            <rdf:Description rdf:about="#R_MAR09559">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.7.15"/>
@@ -282057,19 +282061,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01623c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02628c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01623c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02628c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01594c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01594c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Pcyt2"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR09560" sboTerm="SBO:0000176" id="MAR09560" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09560" sboTerm="SBO:0000176" id="R_MAR09560" name="CTP:ethanolamine-phosphate cytidylyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -282077,7 +282081,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09560">
+            <rdf:Description rdf:about="#R_MAR09560">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.7.14"/>
@@ -282091,19 +282095,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00632c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01623c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00632c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01623c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01591c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01591c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Pect"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR09563" sboTerm="SBO:0000176" id="MAR09563" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09563" sboTerm="SBO:0000176" id="R_MAR09563" name="Aldehyde:NAD+ oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -282111,7 +282115,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09563">
+            <rdf:Description rdf:about="#R_MAR09563">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.2.1.3"/>
@@ -282125,14 +282129,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02713c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02713c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02553c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02711c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02553c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02711c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -282140,7 +282144,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR09564" sboTerm="SBO:0000176" id="MAR09564" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09564" sboTerm="SBO:0000176" id="R_MAR09564" name="Aldehyde:NAD+ oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -282148,7 +282152,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09564">
+            <rdf:Description rdf:about="#R_MAR09564">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.2.1.4"/>
@@ -282163,14 +282167,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02713m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02713m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039m" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02711m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02711m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -282179,7 +282183,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR09565" sboTerm="SBO:0000176" id="MAR09565" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09565" sboTerm="SBO:0000176" id="R_MAR09565" name="trans-2-Methyl-5-isopropylhexa-2,5-dienoyl-CoA hydro-lyase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -282187,7 +282191,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09565">
+            <rdf:Description rdf:about="#R_MAR09565">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.18"/>
@@ -282201,17 +282205,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03031m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03031m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00773m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00773m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG8778"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR09566" sboTerm="SBO:0000176" id="MAR09566" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09566" sboTerm="SBO:0000176" id="R_MAR09566" name="trans-2-Methyl-5-isopropylhexa-2,5-dienoyl-CoA hydro-lyase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -282219,7 +282223,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09566">
+            <rdf:Description rdf:about="#R_MAR09566">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/5.3.3.-"/>
@@ -282234,17 +282238,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03031x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03031x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00773x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00773x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Ech1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR09567" sboTerm="SBO:0000176" id="MAR09567" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09567" sboTerm="SBO:0000176" id="R_MAR09567" name="3-hydroxy-2,6-dimethyl-5-methylene-heptanoyl-CoA hydro-lyase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -282252,7 +282256,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09567">
+            <rdf:Description rdf:about="#R_MAR09567">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.18"/>
@@ -282266,17 +282270,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01579m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01579m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00773m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00773m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG8778"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR09568" sboTerm="SBO:0000176" id="MAR09568" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09568" sboTerm="SBO:0000176" id="R_MAR09568" name="3-hydroxy-2,6-dimethyl-5-methylene-heptanoyl-CoA hydro-lyase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -282284,7 +282288,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09568">
+            <rdf:Description rdf:about="#R_MAR09568">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/C3STDH1Pr"/>
@@ -282297,17 +282301,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01579x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01579x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00773x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00773x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Ech1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR09571" sboTerm="SBO:0000176" id="MAR09571" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09571" sboTerm="SBO:0000176" id="R_MAR09571" name="(5-glutamyl)-peptide:amino-acid 5-glutamyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -282316,7 +282320,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09571">
+            <rdf:Description rdf:about="#R_MAR09571">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.2.2"/>
@@ -282329,16 +282333,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01926e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01926e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01974e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02326e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01974e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02326e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09572" sboTerm="SBO:0000176" id="MAR09572" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09572" sboTerm="SBO:0000176" id="R_MAR09572" name="gamma-glutamyl-beta-aminopropiononitrile amidohydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -282347,7 +282351,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09572">
+            <rdf:Description rdf:about="#R_MAR09572">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.2.2"/>
@@ -282361,17 +282365,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01974e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039e" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02326e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01974e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02326e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01596e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01925e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01596e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01925e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09573" sboTerm="SBO:0000176" id="MAR09573" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09573" sboTerm="SBO:0000176" id="R_MAR09573" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -282380,7 +282384,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09573">
+            <rdf:Description rdf:about="#R_MAR09573">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.17"/>
@@ -282391,13 +282395,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00994c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03109c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00994c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03109c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02825c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02825c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -282417,7 +282421,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR09574" sboTerm="SBO:0000176" id="MAR09574" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09574" sboTerm="SBO:0000176" id="R_MAR09574" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -282426,7 +282430,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09574">
+            <rdf:Description rdf:about="#R_MAR09574">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.17"/>
@@ -282438,13 +282442,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00994r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03109r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00994r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03109r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02825r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02825r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -282464,7 +282468,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR09575" sboTerm="SBO:0000176" id="MAR09575" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09575" sboTerm="SBO:0000176" id="R_MAR09575" name="5-methyltetrahydropteroyltri-L-glutamate:L-selenohomocysteine Se-methyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -282472,7 +282476,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09575">
+            <rdf:Description rdf:about="#R_MAR09575">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.1.1.13"/>
@@ -282485,12 +282489,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01114c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02890c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01114c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02890c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02891c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02979c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02891c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02979c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -282499,7 +282503,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR09580" sboTerm="SBO:0000185" id="MAR09580" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09580" sboTerm="SBO:0000185" id="R_MAR09580" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -282507,7 +282511,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09580">
+            <rdf:Description rdf:about="#R_MAR09580">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_9580"/>
@@ -282517,12 +282521,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01413c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02382e" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM01413c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02382e" stoichiometry="4" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01413e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02382c" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM01413e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02382c" stoichiometry="4" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -282531,7 +282535,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR09581" sboTerm="SBO:0000185" id="MAR09581" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09581" sboTerm="SBO:0000185" id="R_MAR09581" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -282539,7 +282543,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09581">
+            <rdf:Description rdf:about="#R_MAR09581">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_9581"/>
@@ -282549,16 +282553,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02035c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02035c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02035e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02035e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG6126"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR09583" sboTerm="SBO:0000185" id="MAR09583" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09583" sboTerm="SBO:0000185" id="R_MAR09583" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -282566,7 +282570,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09583">
+            <rdf:Description rdf:about="#R_MAR09583">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_9583"/>
@@ -282576,16 +282580,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02467c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02467c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02467e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02467e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG6126"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR09586" sboTerm="SBO:0000185" id="MAR09586" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09586" sboTerm="SBO:0000185" id="R_MAR09586" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -282593,7 +282597,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09586">
+            <rdf:Description rdf:about="#R_MAR09586">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_9586"/>
@@ -282603,16 +282607,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02482e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02482e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02482c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02482c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG33181"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR09587" sboTerm="SBO:0000185" id="MAR09587" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09587" sboTerm="SBO:0000185" id="R_MAR09587" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -282620,7 +282624,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09587">
+            <rdf:Description rdf:about="#R_MAR09587">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_9587"/>
@@ -282630,16 +282634,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01624e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01624e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01624c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01624c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Ctr1A"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR09588" sboTerm="SBO:0000185" id="MAR09588" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09588" sboTerm="SBO:0000185" id="R_MAR09588" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -282647,7 +282651,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09588">
+            <rdf:Description rdf:about="#R_MAR09588">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_9588"/>
@@ -282657,12 +282661,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01306c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01571e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01306c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01571e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01306e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01571c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01306e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01571c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -282671,7 +282675,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR09798" sboTerm="SBO:0000176" id="MAR09798" name="Formation of Alanylalanine" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09798" sboTerm="SBO:0000176" id="R_MAR09798" name="Formation of Alanylalanine" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -282679,7 +282683,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09798">
+            <rdf:Description rdf:about="#R_MAR09798">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.3.2.4"/>
@@ -282694,17 +282698,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01638c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01638c" stoichiometry="2" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03164c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03164c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09806" sboTerm="SBO:0000176" id="MAR09806" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09806" sboTerm="SBO:0000176" id="R_MAR09806" name="glutathione:insulin oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -282712,7 +282716,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09806">
+            <rdf:Description rdf:about="#R_MAR09806">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/5.3.4.1"/>
@@ -282724,12 +282728,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02026c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03169c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03169c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02027c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03170c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02027c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03170c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -282741,7 +282745,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00010" sboTerm="SBO:0000176" id="MAR00010" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00010" sboTerm="SBO:0000176" id="R_MAR00010" name="1-acylglycerol acylhydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -282749,7 +282753,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00010">
+            <rdf:Description rdf:about="#R_MAR00010">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.23"/>
@@ -282761,18 +282765,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00510c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00510c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01983c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01820c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01983c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01820c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG15111"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00011" sboTerm="SBO:0000176" id="MAR00011" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00011" sboTerm="SBO:0000176" id="R_MAR00011" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -282780,7 +282784,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00011">
+            <rdf:Description rdf:about="#R_MAR00011">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_0011"/>
@@ -282790,14 +282794,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01807e" stoichiometry="0.5" constant="true"/>
-          <speciesReference species="MAM01820e" stoichiometry="0.5" constant="true"/>
+          <speciesReference species="M_MAM01807e" stoichiometry="0.5" constant="true"/>
+          <speciesReference species="M_MAM01820e" stoichiometry="0.5" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01819e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01819e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR00012" sboTerm="SBO:0000176" id="MAR00012" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00012" sboTerm="SBO:0000176" id="R_MAR00012" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -282805,7 +282809,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00012">
+            <rdf:Description rdf:about="#R_MAR00012">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_0012"/>
@@ -282815,79 +282819,79 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01819e" stoichiometry="1" constant="true"/>
-        </listOfReactants>
-        <listOfProducts>
-          <speciesReference species="MAM00003e" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM00008e" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM00010e" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM00017e" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM00019e" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM00021e" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM00094e" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM00104e" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM00111e" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM00114e" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM00115e" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM00117e" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM00128e" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM00132e" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM00135e" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM00260e" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM00265e" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM00315e" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM00341e" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM01197e" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM01207e" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM01235e" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM01238e" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM01291e" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM01362e" stoichiometry="0.0082" constant="true"/>
-          <speciesReference species="MAM01373e" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM01432e" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM01582e" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM01583e" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM01584e" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM01585e" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM01689e" stoichiometry="0.0041" constant="true"/>
-          <speciesReference species="MAM01696e" stoichiometry="0.002" constant="true"/>
-          <speciesReference species="MAM01741e" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM01771e" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM01778e" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM01784e" stoichiometry="0.001" constant="true"/>
-          <speciesReference species="MAM01932e" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM02053e" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM02344e" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM02385e" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM02387e" stoichiometry="0.1535" constant="true"/>
-          <speciesReference species="MAM02389e" stoichiometry="0.0092" constant="true"/>
-          <speciesReference species="MAM02456e" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM02457e" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM02494e" stoichiometry="0.0338" constant="true"/>
-          <speciesReference species="MAM02564e" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM02613e" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM02646e" stoichiometry="0.3837" constant="true"/>
-          <speciesReference species="MAM02648e" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM02674e" stoichiometry="0.3015" constant="true"/>
-          <speciesReference species="MAM02675e" stoichiometry="0.0522" constant="true"/>
-          <speciesReference species="MAM02690e" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM02745e" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM02938e" stoichiometry="0.046" constant="true"/>
-          <speciesReference species="MAM02939e" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM03045e" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM03051e" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM03153e" stoichiometry="0.0001" constant="true"/>
-        </listOfProducts>
-      </reaction>
-      <reaction metaid="MAR00013" sboTerm="SBO:0000176" id="MAR00013" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
-        <notes>
-          <body xmlns="http://www.w3.org/1999/xhtml">
-            <p>Confidence Level: 0</p>
-          </body>
-        </notes>
-        <annotation>
-          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00013">
+          <speciesReference species="M_MAM01819e" stoichiometry="1" constant="true"/>
+        </listOfReactants>
+        <listOfProducts>
+          <speciesReference species="M_MAM00003e" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00008e" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00010e" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00017e" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00019e" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00021e" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00094e" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00104e" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00111e" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00114e" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00115e" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00117e" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00128e" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00132e" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00135e" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00260e" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00265e" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00315e" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00341e" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM01197e" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM01207e" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM01235e" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM01238e" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM01291e" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM01362e" stoichiometry="0.0082" constant="true"/>
+          <speciesReference species="M_MAM01373e" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM01432e" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM01582e" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM01583e" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM01584e" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM01585e" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM01689e" stoichiometry="0.0041" constant="true"/>
+          <speciesReference species="M_MAM01696e" stoichiometry="0.002" constant="true"/>
+          <speciesReference species="M_MAM01741e" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM01771e" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM01778e" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM01784e" stoichiometry="0.001" constant="true"/>
+          <speciesReference species="M_MAM01932e" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM02053e" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM02344e" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM02385e" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM02387e" stoichiometry="0.1535" constant="true"/>
+          <speciesReference species="M_MAM02389e" stoichiometry="0.0092" constant="true"/>
+          <speciesReference species="M_MAM02456e" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM02457e" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM02494e" stoichiometry="0.0338" constant="true"/>
+          <speciesReference species="M_MAM02564e" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM02613e" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM02646e" stoichiometry="0.3837" constant="true"/>
+          <speciesReference species="M_MAM02648e" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM02674e" stoichiometry="0.3015" constant="true"/>
+          <speciesReference species="M_MAM02675e" stoichiometry="0.0522" constant="true"/>
+          <speciesReference species="M_MAM02690e" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM02745e" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM02938e" stoichiometry="0.046" constant="true"/>
+          <speciesReference species="M_MAM02939e" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM03045e" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM03051e" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM03153e" stoichiometry="0.0001" constant="true"/>
+        </listOfProducts>
+      </reaction>
+      <reaction metaid="R_MAR00013" sboTerm="SBO:0000176" id="R_MAR00013" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+        <notes>
+          <body xmlns="http://www.w3.org/1999/xhtml">
+            <p>Confidence Level: 0</p>
+          </body>
+        </notes>
+        <annotation>
+          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+            <rdf:Description rdf:about="#R_MAR00013">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.34"/>
@@ -282898,12 +282902,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02048e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02048e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01450e" stoichiometry="20" constant="true"/>
-          <speciesReference species="MAM01451e" stoichiometry="160" constant="true"/>
-          <speciesReference species="MAM02047e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450e" stoichiometry="20" constant="true"/>
+          <speciesReference species="M_MAM01451e" stoichiometry="160" constant="true"/>
+          <speciesReference species="M_MAM02047e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -282913,7 +282917,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00014" sboTerm="SBO:0000176" id="MAR00014" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00014" sboTerm="SBO:0000176" id="R_MAR00014" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -282921,7 +282925,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00014">
+            <rdf:Description rdf:about="#R_MAR00014">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.34"/>
@@ -282932,12 +282936,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02353e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02353e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01450e" stoichiometry="680" constant="true"/>
-          <speciesReference species="MAM01451e" stoichiometry="1515" constant="true"/>
-          <speciesReference species="MAM02352e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450e" stoichiometry="680" constant="true"/>
+          <speciesReference species="M_MAM01451e" stoichiometry="1515" constant="true"/>
+          <speciesReference species="M_MAM02352e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -282947,7 +282951,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00477" sboTerm="SBO:0000176" id="MAR00477" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00477" sboTerm="SBO:0000176" id="R_MAR00477" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -282955,7 +282959,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00477">
+            <rdf:Description rdf:about="#R_MAR00477">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_0477"/>
@@ -282965,15 +282969,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01395e" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02684e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02685e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01395e" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02684e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02685e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02740e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02740e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR00545" sboTerm="SBO:0000176" id="MAR00545" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00545" sboTerm="SBO:0000176" id="R_MAR00545" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -282982,7 +282986,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00545">
+            <rdf:Description rdf:about="#R_MAR00545">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_0545"/>
@@ -282992,71 +282996,71 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00004c" stoichiometry="0.0001" constant="true"/>
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-          <speciesReference species="MAM03050c" stoichiometry="0.0001" constant="true"/>
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-        <listOfProducts>
-          <speciesReference species="MAM01270c" stoichiometry="1" constant="true"/>
-        </listOfProducts>
-      </reaction>
-      <reaction metaid="MAR00546" sboTerm="SBO:0000176" id="MAR00546" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+          <speciesReference species="M_MAM00004c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00006c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00007c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00009c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00012c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00016c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00018c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00020c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00023c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00025c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00093c" stoichiometry="0.0008" constant="true"/>
+          <speciesReference species="M_MAM00095c" stoichiometry="0.0268" constant="true"/>
+          <speciesReference species="M_MAM00101c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00103c" stoichiometry="0.0068" constant="true"/>
+          <speciesReference species="M_MAM00106c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00108c" stoichiometry="0.0024" constant="true"/>
+          <speciesReference species="M_MAM00110c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00113c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00116c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00118c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00119c" stoichiometry="0.0008" constant="true"/>
+          <speciesReference species="M_MAM00121c" stoichiometry="0.0053" constant="true"/>
+          <speciesReference species="M_MAM00123c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00125c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00127c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00129c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00131c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00134c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00262c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00264c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00317c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00343c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM01141c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM01191c" stoichiometry="0.0288" constant="true"/>
+          <speciesReference species="M_MAM01236c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM01237c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM01364c" stoichiometry="0.0544" constant="true"/>
+          <speciesReference species="M_MAM01586c" stoichiometry="0.0241" constant="true"/>
+          <speciesReference species="M_MAM01697c" stoichiometry="0.0091" constant="true"/>
+          <speciesReference species="M_MAM01725c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM01773c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM01934c" stoichiometry="0.0048" constant="true"/>
+          <speciesReference species="M_MAM02052c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM02101c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM02110c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM02112c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM02345c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM02390c" stoichiometry="0.0031" constant="true"/>
+          <speciesReference species="M_MAM02391c" stoichiometry="0.16" constant="true"/>
+          <speciesReference species="M_MAM02495c" stoichiometry="0.0174" constant="true"/>
+          <speciesReference species="M_MAM02612c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM02647c" stoichiometry="0.2632" constant="true"/>
+          <speciesReference species="M_MAM02677c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM02678c" stoichiometry="0.27" constant="true"/>
+          <speciesReference species="M_MAM02689c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM02941c" stoichiometry="0.118" constant="true"/>
+          <speciesReference species="M_MAM02971c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM03047c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM03050c" stoichiometry="0.0001" constant="true"/>
+        </listOfReactants>
+        <listOfProducts>
+          <speciesReference species="M_MAM01270c" stoichiometry="1" constant="true"/>
+        </listOfProducts>
+      </reaction>
+      <reaction metaid="R_MAR00546" sboTerm="SBO:0000176" id="R_MAR00546" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -283065,7 +283069,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00546">
+            <rdf:Description rdf:about="#R_MAR00546">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_0546"/>
@@ -283075,71 +283079,71 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
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-          <speciesReference species="MAM00006c" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM00007c" stoichiometry="0.0001" constant="true"/>
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-          <speciesReference species="MAM00012c" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM00016c" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM00018c" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM00020c" stoichiometry="0.0001" constant="true"/>
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-          <speciesReference species="MAM00025c" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM00093c" stoichiometry="0.0016" constant="true"/>
-          <speciesReference species="MAM00095c" stoichiometry="0.0081" constant="true"/>
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-          <speciesReference species="MAM00106c" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM00108c" stoichiometry="0.0025" constant="true"/>
-          <speciesReference species="MAM00110c" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM00113c" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM00116c" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM00118c" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM00119c" stoichiometry="0.0032" constant="true"/>
-          <speciesReference species="MAM00121c" stoichiometry="0.0018" constant="true"/>
-          <speciesReference species="MAM00123c" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM00125c" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM00127c" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM00129c" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM00131c" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM00134c" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM00262c" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM00264c" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM00317c" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM00343c" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM01141c" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM01191c" stoichiometry="0.0229" constant="true"/>
-          <speciesReference species="MAM01236c" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM01237c" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM01364c" stoichiometry="0.0521" constant="true"/>
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-          <speciesReference species="MAM02391c" stoichiometry="0.281" constant="true"/>
-          <speciesReference species="MAM02495c" stoichiometry="0.0024" constant="true"/>
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-          <speciesReference species="MAM02647c" stoichiometry="0.4226" constant="true"/>
-          <speciesReference species="MAM02677c" stoichiometry="0.0001" constant="true"/>
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-          <speciesReference species="MAM02689c" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM02941c" stoichiometry="0.0384" constant="true"/>
-          <speciesReference species="MAM02971c" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM03047c" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM03050c" stoichiometry="0.0001" constant="true"/>
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-        <listOfProducts>
-          <speciesReference species="MAM01276c" stoichiometry="1" constant="true"/>
-        </listOfProducts>
-      </reaction>
-      <reaction metaid="MAR00547" sboTerm="SBO:0000176" id="MAR00547" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+          <speciesReference species="M_MAM00004c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00006c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00007c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00009c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00012c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00016c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00018c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00020c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00023c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00025c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00093c" stoichiometry="0.0016" constant="true"/>
+          <speciesReference species="M_MAM00095c" stoichiometry="0.0081" constant="true"/>
+          <speciesReference species="M_MAM00101c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00103c" stoichiometry="0.0003" constant="true"/>
+          <speciesReference species="M_MAM00106c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00108c" stoichiometry="0.0025" constant="true"/>
+          <speciesReference species="M_MAM00110c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00113c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00116c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00118c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00119c" stoichiometry="0.0032" constant="true"/>
+          <speciesReference species="M_MAM00121c" stoichiometry="0.0018" constant="true"/>
+          <speciesReference species="M_MAM00123c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00125c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00127c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00129c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00131c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00134c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00262c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00264c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00317c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00343c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM01141c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM01191c" stoichiometry="0.0229" constant="true"/>
+          <speciesReference species="M_MAM01236c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM01237c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM01364c" stoichiometry="0.0521" constant="true"/>
+          <speciesReference species="M_MAM01586c" stoichiometry="0.0217" constant="true"/>
+          <speciesReference species="M_MAM01697c" stoichiometry="0.0023" constant="true"/>
+          <speciesReference species="M_MAM01725c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM01773c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM01934c" stoichiometry="0.003" constant="true"/>
+          <speciesReference species="M_MAM02052c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM02101c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM02110c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM02112c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM02345c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM02390c" stoichiometry="0.0119" constant="true"/>
+          <speciesReference species="M_MAM02391c" stoichiometry="0.281" constant="true"/>
+          <speciesReference species="M_MAM02495c" stoichiometry="0.0024" constant="true"/>
+          <speciesReference species="M_MAM02612c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM02647c" stoichiometry="0.4226" constant="true"/>
+          <speciesReference species="M_MAM02677c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM02678c" stoichiometry="0.12" constant="true"/>
+          <speciesReference species="M_MAM02689c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM02941c" stoichiometry="0.0384" constant="true"/>
+          <speciesReference species="M_MAM02971c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM03047c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM03050c" stoichiometry="0.0001" constant="true"/>
+        </listOfReactants>
+        <listOfProducts>
+          <speciesReference species="M_MAM01276c" stoichiometry="1" constant="true"/>
+        </listOfProducts>
+      </reaction>
+      <reaction metaid="R_MAR00547" sboTerm="SBO:0000176" id="R_MAR00547" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -283148,7 +283152,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00547">
+            <rdf:Description rdf:about="#R_MAR00547">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_0547"/>
@@ -283158,71 +283162,71 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00004c" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM00006c" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM00007c" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM00009c" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM00012c" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM00016c" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM00018c" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM00020c" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM00023c" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM00025c" stoichiometry="0.0001" constant="true"/>
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-          <speciesReference species="MAM03050c" stoichiometry="0.0001" constant="true"/>
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-        <listOfProducts>
-          <speciesReference species="MAM01277c" stoichiometry="1" constant="true"/>
-        </listOfProducts>
-      </reaction>
-      <reaction metaid="MAR00548" sboTerm="SBO:0000176" id="MAR00548" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+          <speciesReference species="M_MAM00004c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00006c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00007c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00009c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00012c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00016c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00018c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00020c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00023c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00025c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00093c" stoichiometry="0.0011" constant="true"/>
+          <speciesReference species="M_MAM00095c" stoichiometry="0.0221" constant="true"/>
+          <speciesReference species="M_MAM00101c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00103c" stoichiometry="0.0035" constant="true"/>
+          <speciesReference species="M_MAM00106c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00108c" stoichiometry="0.0026" constant="true"/>
+          <speciesReference species="M_MAM00110c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00113c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00116c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00118c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00119c" stoichiometry="0.0022" constant="true"/>
+          <speciesReference species="M_MAM00121c" stoichiometry="0.0038" constant="true"/>
+          <speciesReference species="M_MAM00123c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00125c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00127c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00129c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00131c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00134c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00262c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00264c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00317c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00343c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM01141c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM01191c" stoichiometry="0.014" constant="true"/>
+          <speciesReference species="M_MAM01236c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM01237c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM01364c" stoichiometry="0.0264" constant="true"/>
+          <speciesReference species="M_MAM01586c" stoichiometry="0.0194" constant="true"/>
+          <speciesReference species="M_MAM01697c" stoichiometry="0.0141" constant="true"/>
+          <speciesReference species="M_MAM01725c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM01773c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM01934c" stoichiometry="0.0081" constant="true"/>
+          <speciesReference species="M_MAM02052c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM02101c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM02110c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM02112c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM02345c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM02390c" stoichiometry="0.0023" constant="true"/>
+          <speciesReference species="M_MAM02391c" stoichiometry="0.278" constant="true"/>
+          <speciesReference species="M_MAM02495c" stoichiometry="0.003" constant="true"/>
+          <speciesReference species="M_MAM02612c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM02647c" stoichiometry="0.4519" constant="true"/>
+          <speciesReference species="M_MAM02677c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM02678c" stoichiometry="0.0849" constant="true"/>
+          <speciesReference species="M_MAM02689c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM02941c" stoichiometry="0.0584" constant="true"/>
+          <speciesReference species="M_MAM02971c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM03047c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM03050c" stoichiometry="0.0001" constant="true"/>
+        </listOfReactants>
+        <listOfProducts>
+          <speciesReference species="M_MAM01277c" stoichiometry="1" constant="true"/>
+        </listOfProducts>
+      </reaction>
+      <reaction metaid="R_MAR00548" sboTerm="SBO:0000176" id="R_MAR00548" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -283231,7 +283235,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00548">
+            <rdf:Description rdf:about="#R_MAR00548">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_0548"/>
@@ -283241,71 +283245,71 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
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-          <speciesReference species="MAM00006c" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM00007c" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM00009c" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM00012c" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM00016c" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM00018c" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM00020c" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM00023c" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM00025c" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM00093c" stoichiometry="0.0039" constant="true"/>
-          <speciesReference species="MAM00095c" stoichiometry="0.0252" constant="true"/>
-          <speciesReference species="MAM00101c" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM00103c" stoichiometry="0.0109" constant="true"/>
-          <speciesReference species="MAM00106c" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM00108c" stoichiometry="0.0026" constant="true"/>
-          <speciesReference species="MAM00110c" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM00113c" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM00116c" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM00118c" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM00119c" stoichiometry="0.0011" constant="true"/>
-          <speciesReference species="MAM00121c" stoichiometry="0.0056" constant="true"/>
-          <speciesReference species="MAM00123c" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM00125c" stoichiometry="0.0178" constant="true"/>
-          <speciesReference species="MAM00127c" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM00129c" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM00131c" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM00134c" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM00262c" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM00264c" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM00317c" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM00343c" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM01141c" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM01191c" stoichiometry="0.0105" constant="true"/>
-          <speciesReference species="MAM01236c" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM01237c" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM01364c" stoichiometry="0.0709" constant="true"/>
-          <speciesReference species="MAM01586c" stoichiometry="0.0271" constant="true"/>
-          <speciesReference species="MAM01697c" stoichiometry="0.0228" constant="true"/>
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-          <speciesReference species="MAM01773c" stoichiometry="0.0005" constant="true"/>
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-          <speciesReference species="MAM02052c" stoichiometry="0.0005" constant="true"/>
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-          <speciesReference species="MAM02390c" stoichiometry="0.0047" constant="true"/>
-          <speciesReference species="MAM02391c" stoichiometry="0.2479" constant="true"/>
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-          <speciesReference species="MAM02612c" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM02647c" stoichiometry="0.1143" constant="true"/>
-          <speciesReference species="MAM02677c" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM02678c" stoichiometry="0.2781" constant="true"/>
-          <speciesReference species="MAM02689c" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM02941c" stoichiometry="0.1271" constant="true"/>
-          <speciesReference species="MAM02971c" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM03047c" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM03050c" stoichiometry="0.0005" constant="true"/>
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-        <listOfProducts>
-          <speciesReference species="MAM01271c" stoichiometry="1" constant="true"/>
-        </listOfProducts>
-      </reaction>
-      <reaction metaid="MAR00549" sboTerm="SBO:0000176" id="MAR00549" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+          <speciesReference species="M_MAM00004c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00006c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00007c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00009c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00012c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00016c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00018c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00020c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00023c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00025c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00093c" stoichiometry="0.0039" constant="true"/>
+          <speciesReference species="M_MAM00095c" stoichiometry="0.0252" constant="true"/>
+          <speciesReference species="M_MAM00101c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00103c" stoichiometry="0.0109" constant="true"/>
+          <speciesReference species="M_MAM00106c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00108c" stoichiometry="0.0026" constant="true"/>
+          <speciesReference species="M_MAM00110c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00113c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00116c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00118c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00119c" stoichiometry="0.0011" constant="true"/>
+          <speciesReference species="M_MAM00121c" stoichiometry="0.0056" constant="true"/>
+          <speciesReference species="M_MAM00123c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00125c" stoichiometry="0.0178" constant="true"/>
+          <speciesReference species="M_MAM00127c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00129c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00131c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00134c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00262c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00264c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00317c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00343c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM01141c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM01191c" stoichiometry="0.0105" constant="true"/>
+          <speciesReference species="M_MAM01236c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM01237c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM01364c" stoichiometry="0.0709" constant="true"/>
+          <speciesReference species="M_MAM01586c" stoichiometry="0.0271" constant="true"/>
+          <speciesReference species="M_MAM01697c" stoichiometry="0.0228" constant="true"/>
+          <speciesReference species="M_MAM01725c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM01773c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM01934c" stoichiometry="0.0036" constant="true"/>
+          <speciesReference species="M_MAM02052c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM02101c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM02110c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM02112c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM02345c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM02390c" stoichiometry="0.0047" constant="true"/>
+          <speciesReference species="M_MAM02391c" stoichiometry="0.2479" constant="true"/>
+          <speciesReference species="M_MAM02495c" stoichiometry="0.0054" constant="true"/>
+          <speciesReference species="M_MAM02612c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM02647c" stoichiometry="0.1143" constant="true"/>
+          <speciesReference species="M_MAM02677c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM02678c" stoichiometry="0.2781" constant="true"/>
+          <speciesReference species="M_MAM02689c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM02941c" stoichiometry="0.1271" constant="true"/>
+          <speciesReference species="M_MAM02971c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM03047c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM03050c" stoichiometry="0.0005" constant="true"/>
+        </listOfReactants>
+        <listOfProducts>
+          <speciesReference species="M_MAM01271c" stoichiometry="1" constant="true"/>
+        </listOfProducts>
+      </reaction>
+      <reaction metaid="R_MAR00549" sboTerm="SBO:0000176" id="R_MAR00549" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -283314,7 +283318,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00549">
+            <rdf:Description rdf:about="#R_MAR00549">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_0549"/>
@@ -283324,71 +283328,71 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00004c" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM00006c" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM00007c" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM00009c" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM00012c" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM00016c" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM00018c" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM00020c" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM00023c" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM00025c" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM00093c" stoichiometry="0.0052" constant="true"/>
-          <speciesReference species="MAM00095c" stoichiometry="0.0459" constant="true"/>
-          <speciesReference species="MAM00101c" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM00103c" stoichiometry="0.0221" constant="true"/>
-          <speciesReference species="MAM00106c" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM00108c" stoichiometry="0.0025" constant="true"/>
-          <speciesReference species="MAM00110c" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM00113c" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM00116c" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM00118c" stoichiometry="0.0005" constant="true"/>
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-          <speciesReference species="MAM01237c" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM01364c" stoichiometry="0.2125" constant="true"/>
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-          <speciesReference species="MAM01773c" stoichiometry="0.0005" constant="true"/>
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-          <speciesReference species="MAM02391c" stoichiometry="0.1312" constant="true"/>
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-          <speciesReference species="MAM02647c" stoichiometry="0.0619" constant="true"/>
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-          <speciesReference species="MAM02678c" stoichiometry="0.1243" constant="true"/>
-          <speciesReference species="MAM02689c" stoichiometry="0.0005" constant="true"/>
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-          <speciesReference species="MAM03047c" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM03050c" stoichiometry="0.0005" constant="true"/>
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-        <listOfProducts>
-          <speciesReference species="MAM01272c" stoichiometry="1" constant="true"/>
-        </listOfProducts>
-      </reaction>
-      <reaction metaid="MAR00550" sboTerm="SBO:0000176" id="MAR00550" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+          <speciesReference species="M_MAM00004c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00006c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00007c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00009c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00012c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00016c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00018c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00020c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00023c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00025c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00093c" stoichiometry="0.0052" constant="true"/>
+          <speciesReference species="M_MAM00095c" stoichiometry="0.0459" constant="true"/>
+          <speciesReference species="M_MAM00101c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00103c" stoichiometry="0.0221" constant="true"/>
+          <speciesReference species="M_MAM00106c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00108c" stoichiometry="0.0025" constant="true"/>
+          <speciesReference species="M_MAM00110c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00113c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00116c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00118c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00119c" stoichiometry="0.0007" constant="true"/>
+          <speciesReference species="M_MAM00121c" stoichiometry="0.0067" constant="true"/>
+          <speciesReference species="M_MAM00123c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00125c" stoichiometry="0.0163" constant="true"/>
+          <speciesReference species="M_MAM00127c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00129c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00131c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00134c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00262c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00264c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00317c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00343c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM01141c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM01191c" stoichiometry="0.0327" constant="true"/>
+          <speciesReference species="M_MAM01236c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM01237c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM01364c" stoichiometry="0.2125" constant="true"/>
+          <speciesReference species="M_MAM01586c" stoichiometry="0.0285" constant="true"/>
+          <speciesReference species="M_MAM01697c" stoichiometry="0.0411" constant="true"/>
+          <speciesReference species="M_MAM01725c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM01773c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM01934c" stoichiometry="0.0011" constant="true"/>
+          <speciesReference species="M_MAM02052c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM02101c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM02110c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM02112c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM02345c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM02390c" stoichiometry="0.0166" constant="true"/>
+          <speciesReference species="M_MAM02391c" stoichiometry="0.1312" constant="true"/>
+          <speciesReference species="M_MAM02495c" stoichiometry="0.0319" constant="true"/>
+          <speciesReference species="M_MAM02612c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM02647c" stoichiometry="0.0619" constant="true"/>
+          <speciesReference species="M_MAM02677c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM02678c" stoichiometry="0.1243" constant="true"/>
+          <speciesReference species="M_MAM02689c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM02941c" stoichiometry="0.1983" constant="true"/>
+          <speciesReference species="M_MAM02971c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM03047c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM03050c" stoichiometry="0.0005" constant="true"/>
+        </listOfReactants>
+        <listOfProducts>
+          <speciesReference species="M_MAM01272c" stoichiometry="1" constant="true"/>
+        </listOfProducts>
+      </reaction>
+      <reaction metaid="R_MAR00550" sboTerm="SBO:0000176" id="R_MAR00550" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -283397,7 +283401,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00550">
+            <rdf:Description rdf:about="#R_MAR00550">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_0550"/>
@@ -283407,71 +283411,71 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
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-          <speciesReference species="MAM00006c" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM00007c" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM00009c" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM00012c" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM00016c" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM00018c" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM00020c" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM00023c" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM00025c" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM00093c" stoichiometry="0.0055" constant="true"/>
-          <speciesReference species="MAM00095c" stoichiometry="0.0931" constant="true"/>
-          <speciesReference species="MAM00101c" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM00103c" stoichiometry="0.0286" constant="true"/>
-          <speciesReference species="MAM00106c" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM00108c" stoichiometry="0.0025" constant="true"/>
-          <speciesReference species="MAM00110c" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM00113c" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM00116c" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM00118c" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM00119c" stoichiometry="0.0043" constant="true"/>
-          <speciesReference species="MAM00121c" stoichiometry="0.0329" constant="true"/>
-          <speciesReference species="MAM00123c" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM00125c" stoichiometry="0.0174" constant="true"/>
-          <speciesReference species="MAM00127c" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM00129c" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM00131c" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM00134c" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM00262c" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM00264c" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM00317c" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM00343c" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM01141c" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM01191c" stoichiometry="0.0058" constant="true"/>
-          <speciesReference species="MAM01236c" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM01237c" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM01364c" stoichiometry="0.2005" constant="true"/>
-          <speciesReference species="MAM01586c" stoichiometry="0.0131" constant="true"/>
-          <speciesReference species="MAM01697c" stoichiometry="0.0089" constant="true"/>
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-          <speciesReference species="MAM01773c" stoichiometry="0.0005" constant="true"/>
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-          <speciesReference species="MAM02052c" stoichiometry="0.0005" constant="true"/>
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-          <speciesReference species="MAM02390c" stoichiometry="0.0035" constant="true"/>
-          <speciesReference species="MAM02391c" stoichiometry="0.0177" constant="true"/>
-          <speciesReference species="MAM02495c" stoichiometry="0.0055" constant="true"/>
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-          <speciesReference species="MAM02647c" stoichiometry="0.0323" constant="true"/>
-          <speciesReference species="MAM02677c" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM02678c" stoichiometry="0.0337" constant="true"/>
-          <speciesReference species="MAM02689c" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM02941c" stoichiometry="0.4731" constant="true"/>
-          <speciesReference species="MAM02971c" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM03047c" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM03050c" stoichiometry="0.0005" constant="true"/>
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-        <listOfProducts>
-          <speciesReference species="MAM01274c" stoichiometry="1" constant="true"/>
-        </listOfProducts>
-      </reaction>
-      <reaction metaid="MAR00551" sboTerm="SBO:0000176" id="MAR00551" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+          <speciesReference species="M_MAM00004c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00006c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00007c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00009c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00012c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00016c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00018c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00020c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00023c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00025c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00093c" stoichiometry="0.0055" constant="true"/>
+          <speciesReference species="M_MAM00095c" stoichiometry="0.0931" constant="true"/>
+          <speciesReference species="M_MAM00101c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00103c" stoichiometry="0.0286" constant="true"/>
+          <speciesReference species="M_MAM00106c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00108c" stoichiometry="0.0025" constant="true"/>
+          <speciesReference species="M_MAM00110c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00113c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00116c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00118c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00119c" stoichiometry="0.0043" constant="true"/>
+          <speciesReference species="M_MAM00121c" stoichiometry="0.0329" constant="true"/>
+          <speciesReference species="M_MAM00123c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00125c" stoichiometry="0.0174" constant="true"/>
+          <speciesReference species="M_MAM00127c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00129c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00131c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00134c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00262c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00264c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00317c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00343c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM01141c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM01191c" stoichiometry="0.0058" constant="true"/>
+          <speciesReference species="M_MAM01236c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM01237c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM01364c" stoichiometry="0.2005" constant="true"/>
+          <speciesReference species="M_MAM01586c" stoichiometry="0.0131" constant="true"/>
+          <speciesReference species="M_MAM01697c" stoichiometry="0.0089" constant="true"/>
+          <speciesReference species="M_MAM01725c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM01773c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM01934c" stoichiometry="0.0011" constant="true"/>
+          <speciesReference species="M_MAM02052c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM02101c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM02110c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM02112c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM02345c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM02390c" stoichiometry="0.0035" constant="true"/>
+          <speciesReference species="M_MAM02391c" stoichiometry="0.0177" constant="true"/>
+          <speciesReference species="M_MAM02495c" stoichiometry="0.0055" constant="true"/>
+          <speciesReference species="M_MAM02612c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM02647c" stoichiometry="0.0323" constant="true"/>
+          <speciesReference species="M_MAM02677c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM02678c" stoichiometry="0.0337" constant="true"/>
+          <speciesReference species="M_MAM02689c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM02941c" stoichiometry="0.4731" constant="true"/>
+          <speciesReference species="M_MAM02971c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM03047c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM03050c" stoichiometry="0.0005" constant="true"/>
+        </listOfReactants>
+        <listOfProducts>
+          <speciesReference species="M_MAM01274c" stoichiometry="1" constant="true"/>
+        </listOfProducts>
+      </reaction>
+      <reaction metaid="R_MAR00551" sboTerm="SBO:0000176" id="R_MAR00551" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -283480,7 +283484,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00551">
+            <rdf:Description rdf:about="#R_MAR00551">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_0551"/>
@@ -283490,71 +283494,71 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00004c" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM00006c" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM00007c" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM00009c" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM00012c" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM00016c" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM00018c" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM00020c" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM00023c" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM00025c" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM00093c" stoichiometry="0.0124" constant="true"/>
-          <speciesReference species="MAM00095c" stoichiometry="0.0269" constant="true"/>
-          <speciesReference species="MAM00101c" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM00103c" stoichiometry="0.0043" constant="true"/>
-          <speciesReference species="MAM00106c" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM00108c" stoichiometry="0.0027" constant="true"/>
-          <speciesReference species="MAM00110c" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM00113c" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM00116c" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM00118c" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM00119c" stoichiometry="0.0031" constant="true"/>
-          <speciesReference species="MAM00121c" stoichiometry="0.0101" constant="true"/>
-          <speciesReference species="MAM00123c" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM00125c" stoichiometry="0.0179" constant="true"/>
-          <speciesReference species="MAM00127c" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM00129c" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM00131c" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM00134c" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM00262c" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM00264c" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM00317c" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM00343c" stoichiometry="0.0005" constant="true"/>
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-          <speciesReference species="MAM01236c" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM01237c" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM01364c" stoichiometry="0.2118" constant="true"/>
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-          <speciesReference species="MAM02647c" stoichiometry="0.136" constant="true"/>
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-          <speciesReference species="MAM02689c" stoichiometry="0.0005" constant="true"/>
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-          <speciesReference species="MAM03047c" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM03050c" stoichiometry="0.0005" constant="true"/>
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-        <listOfProducts>
-          <speciesReference species="MAM01273c" stoichiometry="1" constant="true"/>
-        </listOfProducts>
-      </reaction>
-      <reaction metaid="MAR00552" sboTerm="SBO:0000176" id="MAR00552" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+          <speciesReference species="M_MAM00004c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00006c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00007c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00009c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00012c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00016c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00018c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00020c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00023c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00025c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00093c" stoichiometry="0.0124" constant="true"/>
+          <speciesReference species="M_MAM00095c" stoichiometry="0.0269" constant="true"/>
+          <speciesReference species="M_MAM00101c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00103c" stoichiometry="0.0043" constant="true"/>
+          <speciesReference species="M_MAM00106c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00108c" stoichiometry="0.0027" constant="true"/>
+          <speciesReference species="M_MAM00110c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00113c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00116c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00118c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00119c" stoichiometry="0.0031" constant="true"/>
+          <speciesReference species="M_MAM00121c" stoichiometry="0.0101" constant="true"/>
+          <speciesReference species="M_MAM00123c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00125c" stoichiometry="0.0179" constant="true"/>
+          <speciesReference species="M_MAM00127c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00129c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00131c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00134c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00262c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00264c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00317c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00343c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM01141c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM01191c" stoichiometry="0.0053" constant="true"/>
+          <speciesReference species="M_MAM01236c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM01237c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM01364c" stoichiometry="0.2118" constant="true"/>
+          <speciesReference species="M_MAM01586c" stoichiometry="0.0266" constant="true"/>
+          <speciesReference species="M_MAM01697c" stoichiometry="0.0228" constant="true"/>
+          <speciesReference species="M_MAM01725c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM01773c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM01934c" stoichiometry="0.0012" constant="true"/>
+          <speciesReference species="M_MAM02052c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM02101c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM02110c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM02112c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM02345c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM02390c" stoichiometry="0.0019" constant="true"/>
+          <speciesReference species="M_MAM02391c" stoichiometry="0.0678" constant="true"/>
+          <speciesReference species="M_MAM02495c" stoichiometry="0.0056" constant="true"/>
+          <speciesReference species="M_MAM02612c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM02647c" stoichiometry="0.136" constant="true"/>
+          <speciesReference species="M_MAM02677c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM02678c" stoichiometry="0.0678" constant="true"/>
+          <speciesReference species="M_MAM02689c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM02941c" stoichiometry="0.3553" constant="true"/>
+          <speciesReference species="M_MAM02971c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM03047c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM03050c" stoichiometry="0.0005" constant="true"/>
+        </listOfReactants>
+        <listOfProducts>
+          <speciesReference species="M_MAM01273c" stoichiometry="1" constant="true"/>
+        </listOfProducts>
+      </reaction>
+      <reaction metaid="R_MAR00552" sboTerm="SBO:0000176" id="R_MAR00552" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -283563,7 +283567,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00552">
+            <rdf:Description rdf:about="#R_MAR00552">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_0552"/>
@@ -283573,71 +283577,71 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
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-          <speciesReference species="MAM00006c" stoichiometry="0.002" constant="true"/>
-          <speciesReference species="MAM00007c" stoichiometry="0.002" constant="true"/>
-          <speciesReference species="MAM00009c" stoichiometry="0.002" constant="true"/>
-          <speciesReference species="MAM00012c" stoichiometry="0.002" constant="true"/>
-          <speciesReference species="MAM00016c" stoichiometry="0.002" constant="true"/>
-          <speciesReference species="MAM00018c" stoichiometry="0.002" constant="true"/>
-          <speciesReference species="MAM00020c" stoichiometry="0.002" constant="true"/>
-          <speciesReference species="MAM00023c" stoichiometry="0.002" constant="true"/>
-          <speciesReference species="MAM00025c" stoichiometry="0.002" constant="true"/>
-          <speciesReference species="MAM00093c" stoichiometry="0.002" constant="true"/>
-          <speciesReference species="MAM00095c" stoichiometry="0.003" constant="true"/>
-          <speciesReference species="MAM00101c" stoichiometry="0.002" constant="true"/>
-          <speciesReference species="MAM00103c" stoichiometry="0.0068" constant="true"/>
-          <speciesReference species="MAM00106c" stoichiometry="0.002" constant="true"/>
-          <speciesReference species="MAM00108c" stoichiometry="0.002" constant="true"/>
-          <speciesReference species="MAM00110c" stoichiometry="0.002" constant="true"/>
-          <speciesReference species="MAM00113c" stoichiometry="0.002" constant="true"/>
-          <speciesReference species="MAM00116c" stoichiometry="0.002" constant="true"/>
-          <speciesReference species="MAM00118c" stoichiometry="0.002" constant="true"/>
-          <speciesReference species="MAM00119c" stoichiometry="0.002" constant="true"/>
-          <speciesReference species="MAM00121c" stoichiometry="0.002" constant="true"/>
-          <speciesReference species="MAM00123c" stoichiometry="0.002" constant="true"/>
-          <speciesReference species="MAM00125c" stoichiometry="0.002" constant="true"/>
-          <speciesReference species="MAM00127c" stoichiometry="0.002" constant="true"/>
-          <speciesReference species="MAM00129c" stoichiometry="0.002" constant="true"/>
-          <speciesReference species="MAM00131c" stoichiometry="0.002" constant="true"/>
-          <speciesReference species="MAM00134c" stoichiometry="0.002" constant="true"/>
-          <speciesReference species="MAM00262c" stoichiometry="0.002" constant="true"/>
-          <speciesReference species="MAM00264c" stoichiometry="0.002" constant="true"/>
-          <speciesReference species="MAM00317c" stoichiometry="0.002" constant="true"/>
-          <speciesReference species="MAM00343c" stoichiometry="0.002" constant="true"/>
-          <speciesReference species="MAM01141c" stoichiometry="0.002" constant="true"/>
-          <speciesReference species="MAM01191c" stoichiometry="0.0358" constant="true"/>
-          <speciesReference species="MAM01236c" stoichiometry="0.002" constant="true"/>
-          <speciesReference species="MAM01237c" stoichiometry="0.002" constant="true"/>
-          <speciesReference species="MAM01364c" stoichiometry="0.0136" constant="true"/>
-          <speciesReference species="MAM01586c" stoichiometry="0.0453" constant="true"/>
-          <speciesReference species="MAM01697c" stoichiometry="0.002" constant="true"/>
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-          <speciesReference species="MAM02390c" stoichiometry="0.0075" constant="true"/>
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-          <speciesReference species="MAM02495c" stoichiometry="0.011" constant="true"/>
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-          <speciesReference species="MAM02647c" stoichiometry="0.061" constant="true"/>
-          <speciesReference species="MAM02677c" stoichiometry="0.002" constant="true"/>
-          <speciesReference species="MAM02678c" stoichiometry="0.557" constant="true"/>
-          <speciesReference species="MAM02689c" stoichiometry="0.002" constant="true"/>
-          <speciesReference species="MAM02941c" stoichiometry="0.138" constant="true"/>
-          <speciesReference species="MAM02971c" stoichiometry="0.002" constant="true"/>
-          <speciesReference species="MAM03047c" stoichiometry="0.002" constant="true"/>
-          <speciesReference species="MAM03050c" stoichiometry="0.002" constant="true"/>
-        </listOfReactants>
-        <listOfProducts>
-          <speciesReference species="MAM01275c" stoichiometry="1" constant="true"/>
-        </listOfProducts>
-      </reaction>
-      <reaction metaid="MAR00553" sboTerm="SBO:0000176" id="MAR00553" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+          <speciesReference species="M_MAM00004c" stoichiometry="0.002" constant="true"/>
+          <speciesReference species="M_MAM00006c" stoichiometry="0.002" constant="true"/>
+          <speciesReference species="M_MAM00007c" stoichiometry="0.002" constant="true"/>
+          <speciesReference species="M_MAM00009c" stoichiometry="0.002" constant="true"/>
+          <speciesReference species="M_MAM00012c" stoichiometry="0.002" constant="true"/>
+          <speciesReference species="M_MAM00016c" stoichiometry="0.002" constant="true"/>
+          <speciesReference species="M_MAM00018c" stoichiometry="0.002" constant="true"/>
+          <speciesReference species="M_MAM00020c" stoichiometry="0.002" constant="true"/>
+          <speciesReference species="M_MAM00023c" stoichiometry="0.002" constant="true"/>
+          <speciesReference species="M_MAM00025c" stoichiometry="0.002" constant="true"/>
+          <speciesReference species="M_MAM00093c" stoichiometry="0.002" constant="true"/>
+          <speciesReference species="M_MAM00095c" stoichiometry="0.003" constant="true"/>
+          <speciesReference species="M_MAM00101c" stoichiometry="0.002" constant="true"/>
+          <speciesReference species="M_MAM00103c" stoichiometry="0.0068" constant="true"/>
+          <speciesReference species="M_MAM00106c" stoichiometry="0.002" constant="true"/>
+          <speciesReference species="M_MAM00108c" stoichiometry="0.002" constant="true"/>
+          <speciesReference species="M_MAM00110c" stoichiometry="0.002" constant="true"/>
+          <speciesReference species="M_MAM00113c" stoichiometry="0.002" constant="true"/>
+          <speciesReference species="M_MAM00116c" stoichiometry="0.002" constant="true"/>
+          <speciesReference species="M_MAM00118c" stoichiometry="0.002" constant="true"/>
+          <speciesReference species="M_MAM00119c" stoichiometry="0.002" constant="true"/>
+          <speciesReference species="M_MAM00121c" stoichiometry="0.002" constant="true"/>
+          <speciesReference species="M_MAM00123c" stoichiometry="0.002" constant="true"/>
+          <speciesReference species="M_MAM00125c" stoichiometry="0.002" constant="true"/>
+          <speciesReference species="M_MAM00127c" stoichiometry="0.002" constant="true"/>
+          <speciesReference species="M_MAM00129c" stoichiometry="0.002" constant="true"/>
+          <speciesReference species="M_MAM00131c" stoichiometry="0.002" constant="true"/>
+          <speciesReference species="M_MAM00134c" stoichiometry="0.002" constant="true"/>
+          <speciesReference species="M_MAM00262c" stoichiometry="0.002" constant="true"/>
+          <speciesReference species="M_MAM00264c" stoichiometry="0.002" constant="true"/>
+          <speciesReference species="M_MAM00317c" stoichiometry="0.002" constant="true"/>
+          <speciesReference species="M_MAM00343c" stoichiometry="0.002" constant="true"/>
+          <speciesReference species="M_MAM01141c" stoichiometry="0.002" constant="true"/>
+          <speciesReference species="M_MAM01191c" stoichiometry="0.0358" constant="true"/>
+          <speciesReference species="M_MAM01236c" stoichiometry="0.002" constant="true"/>
+          <speciesReference species="M_MAM01237c" stoichiometry="0.002" constant="true"/>
+          <speciesReference species="M_MAM01364c" stoichiometry="0.0136" constant="true"/>
+          <speciesReference species="M_MAM01586c" stoichiometry="0.0453" constant="true"/>
+          <speciesReference species="M_MAM01697c" stoichiometry="0.002" constant="true"/>
+          <speciesReference species="M_MAM01725c" stoichiometry="0.002" constant="true"/>
+          <speciesReference species="M_MAM01773c" stoichiometry="0.002" constant="true"/>
+          <speciesReference species="M_MAM01934c" stoichiometry="0.002" constant="true"/>
+          <speciesReference species="M_MAM02052c" stoichiometry="0.002" constant="true"/>
+          <speciesReference species="M_MAM02101c" stoichiometry="0.002" constant="true"/>
+          <speciesReference species="M_MAM02110c" stoichiometry="0.002" constant="true"/>
+          <speciesReference species="M_MAM02112c" stoichiometry="0.002" constant="true"/>
+          <speciesReference species="M_MAM02345c" stoichiometry="0.002" constant="true"/>
+          <speciesReference species="M_MAM02390c" stoichiometry="0.0075" constant="true"/>
+          <speciesReference species="M_MAM02391c" stoichiometry="0.025" constant="true"/>
+          <speciesReference species="M_MAM02495c" stoichiometry="0.011" constant="true"/>
+          <speciesReference species="M_MAM02612c" stoichiometry="0.002" constant="true"/>
+          <speciesReference species="M_MAM02647c" stoichiometry="0.061" constant="true"/>
+          <speciesReference species="M_MAM02677c" stoichiometry="0.002" constant="true"/>
+          <speciesReference species="M_MAM02678c" stoichiometry="0.557" constant="true"/>
+          <speciesReference species="M_MAM02689c" stoichiometry="0.002" constant="true"/>
+          <speciesReference species="M_MAM02941c" stoichiometry="0.138" constant="true"/>
+          <speciesReference species="M_MAM02971c" stoichiometry="0.002" constant="true"/>
+          <speciesReference species="M_MAM03047c" stoichiometry="0.002" constant="true"/>
+          <speciesReference species="M_MAM03050c" stoichiometry="0.002" constant="true"/>
+        </listOfReactants>
+        <listOfProducts>
+          <speciesReference species="M_MAM01275c" stoichiometry="1" constant="true"/>
+        </listOfProducts>
+      </reaction>
+      <reaction metaid="R_MAR00553" sboTerm="SBO:0000176" id="R_MAR00553" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -283646,7 +283650,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00553">
+            <rdf:Description rdf:about="#R_MAR00553">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_0553"/>
@@ -283656,71 +283660,71 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
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-          <speciesReference species="MAM00006c" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM00007c" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM00009c" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM00012c" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM00016c" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM00018c" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM00020c" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM00023c" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM00025c" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM00093c" stoichiometry="0.0016" constant="true"/>
-          <speciesReference species="MAM00095c" stoichiometry="0.0081" constant="true"/>
-          <speciesReference species="MAM00101c" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM00103c" stoichiometry="0.0003" constant="true"/>
-          <speciesReference species="MAM00106c" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM00108c" stoichiometry="0.0025" constant="true"/>
-          <speciesReference species="MAM00110c" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM00113c" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM00116c" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM00118c" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM00119c" stoichiometry="0.0032" constant="true"/>
-          <speciesReference species="MAM00121c" stoichiometry="0.0018" constant="true"/>
-          <speciesReference species="MAM00123c" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM00125c" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM00127c" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM00129c" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM00131c" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM00134c" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM00262c" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM00264c" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM00317c" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM00343c" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM01141c" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM01191c" stoichiometry="0.0229" constant="true"/>
-          <speciesReference species="MAM01236c" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM01237c" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM01364c" stoichiometry="0.0521" constant="true"/>
-          <speciesReference species="MAM01586c" stoichiometry="0.0217" constant="true"/>
-          <speciesReference species="MAM01697c" stoichiometry="0.0023" constant="true"/>
-          <speciesReference species="MAM01725c" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM01773c" stoichiometry="0.0001" constant="true"/>
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-        <listOfProducts>
-          <speciesReference species="MAM01269c" stoichiometry="1" constant="true"/>
-        </listOfProducts>
-      </reaction>
-      <reaction metaid="MAR00555" sboTerm="SBO:0000176" id="MAR00555" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+          <speciesReference species="M_MAM00004c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00006c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00007c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00009c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00012c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00016c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00018c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00020c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00023c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00025c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00093c" stoichiometry="0.0016" constant="true"/>
+          <speciesReference species="M_MAM00095c" stoichiometry="0.0081" constant="true"/>
+          <speciesReference species="M_MAM00101c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00103c" stoichiometry="0.0003" constant="true"/>
+          <speciesReference species="M_MAM00106c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00108c" stoichiometry="0.0025" constant="true"/>
+          <speciesReference species="M_MAM00110c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00113c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00116c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00118c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00119c" stoichiometry="0.0032" constant="true"/>
+          <speciesReference species="M_MAM00121c" stoichiometry="0.0018" constant="true"/>
+          <speciesReference species="M_MAM00123c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00125c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00127c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00129c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00131c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00134c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00262c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00264c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00317c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00343c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM01141c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM01191c" stoichiometry="0.0229" constant="true"/>
+          <speciesReference species="M_MAM01236c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM01237c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM01364c" stoichiometry="0.0521" constant="true"/>
+          <speciesReference species="M_MAM01586c" stoichiometry="0.0217" constant="true"/>
+          <speciesReference species="M_MAM01697c" stoichiometry="0.0023" constant="true"/>
+          <speciesReference species="M_MAM01725c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM01773c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM01934c" stoichiometry="0.003" constant="true"/>
+          <speciesReference species="M_MAM02052c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM02101c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM02110c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM02112c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM02345c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM02390c" stoichiometry="0.0119" constant="true"/>
+          <speciesReference species="M_MAM02391c" stoichiometry="0.281" constant="true"/>
+          <speciesReference species="M_MAM02495c" stoichiometry="0.0024" constant="true"/>
+          <speciesReference species="M_MAM02612c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM02647c" stoichiometry="0.4226" constant="true"/>
+          <speciesReference species="M_MAM02677c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM02678c" stoichiometry="0.12" constant="true"/>
+          <speciesReference species="M_MAM02689c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM02941c" stoichiometry="0.0384" constant="true"/>
+          <speciesReference species="M_MAM02971c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM03047c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM03050c" stoichiometry="0.0001" constant="true"/>
+        </listOfReactants>
+        <listOfProducts>
+          <speciesReference species="M_MAM01269c" stoichiometry="1" constant="true"/>
+        </listOfProducts>
+      </reaction>
+      <reaction metaid="R_MAR00555" sboTerm="SBO:0000176" id="R_MAR00555" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -283729,7 +283733,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00555">
+            <rdf:Description rdf:about="#R_MAR00555">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_0555"/>
@@ -283739,71 +283743,71 @@
           </rdf:RDF>
         </annotation>
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-          <speciesReference species="MAM00437c" stoichiometry="0.0001" constant="true"/>
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-          <speciesReference species="MAM00441c" stoichiometry="0.0001" constant="true"/>
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-          <speciesReference species="MAM00455c" stoichiometry="0.0001" constant="true"/>
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-          <speciesReference species="MAM00500c" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM00501c" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM00502c" stoichiometry="0.0001" constant="true"/>
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-        <listOfProducts>
-          <speciesReference species="MAM00490c" stoichiometry="1" constant="true"/>
-        </listOfProducts>
-      </reaction>
-      <reaction metaid="MAR00556" sboTerm="SBO:0000176" id="MAR00556" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+          <speciesReference species="M_MAM00436c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00437c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00438c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00439c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00440c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00441c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00442c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00443c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00444c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00445c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00446c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00447c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00448c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00449c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00450c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00451c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00452c" stoichiometry="0.0013" constant="true"/>
+          <speciesReference species="M_MAM00453c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00454c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00455c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00456c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00457c" stoichiometry="0.0028" constant="true"/>
+          <speciesReference species="M_MAM00458c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00459c" stoichiometry="0.0017" constant="true"/>
+          <speciesReference species="M_MAM00460c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00461c" stoichiometry="0.0286" constant="true"/>
+          <speciesReference species="M_MAM00462c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00463c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00464c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00465c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00466c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00467c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00468c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00469c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00470c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00471c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00472c" stoichiometry="0.0024" constant="true"/>
+          <speciesReference species="M_MAM00474c" stoichiometry="0.0208" constant="true"/>
+          <speciesReference species="M_MAM00476c" stoichiometry="0.0013" constant="true"/>
+          <speciesReference species="M_MAM00477c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00478c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00479c" stoichiometry="0.0048" constant="true"/>
+          <speciesReference species="M_MAM00480c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00481c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00482c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00483c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00484c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00491c" stoichiometry="0.0741" constant="true"/>
+          <speciesReference species="M_MAM00492c" stoichiometry="0.0037" constant="true"/>
+          <speciesReference species="M_MAM00493c" stoichiometry="0.0096" constant="true"/>
+          <speciesReference species="M_MAM00494c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00495c" stoichiometry="0.122" constant="true"/>
+          <speciesReference species="M_MAM00496c" stoichiometry="0.64" constant="true"/>
+          <speciesReference species="M_MAM00497c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00498c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00499c" stoichiometry="0.082" constant="true"/>
+          <speciesReference species="M_MAM00500c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00501c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00502c" stoichiometry="0.0001" constant="true"/>
+        </listOfReactants>
+        <listOfProducts>
+          <speciesReference species="M_MAM00490c" stoichiometry="1" constant="true"/>
+        </listOfProducts>
+      </reaction>
+      <reaction metaid="R_MAR00556" sboTerm="SBO:0000176" id="R_MAR00556" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -283812,7 +283816,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00556">
+            <rdf:Description rdf:about="#R_MAR00556">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_0556"/>
@@ -283822,71 +283826,71 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
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-          <speciesReference species="MAM00493c" stoichiometry="0.0054" constant="true"/>
-          <speciesReference species="MAM00494c" stoichiometry="0.0005" constant="true"/>
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-        <listOfProducts>
-          <speciesReference species="MAM00485c" stoichiometry="1" constant="true"/>
-        </listOfProducts>
-      </reaction>
-      <reaction metaid="MAR00557" sboTerm="SBO:0000176" id="MAR00557" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+          <speciesReference species="M_MAM00436c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00437c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00438c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00439c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00440c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00441c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00442c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00443c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00444c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00445c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00446c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00447c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00448c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00449c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00450c" stoichiometry="0.0252" constant="true"/>
+          <speciesReference species="M_MAM00451c" stoichiometry="0.0039" constant="true"/>
+          <speciesReference species="M_MAM00452c" stoichiometry="0.0109" constant="true"/>
+          <speciesReference species="M_MAM00453c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00454c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00455c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00456c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00457c" stoichiometry="0.0026" constant="true"/>
+          <speciesReference species="M_MAM00458c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00459c" stoichiometry="0.0056" constant="true"/>
+          <speciesReference species="M_MAM00460c" stoichiometry="0.0011" constant="true"/>
+          <speciesReference species="M_MAM00461c" stoichiometry="0.0105" constant="true"/>
+          <speciesReference species="M_MAM00462c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00463c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00464c" stoichiometry="0.0178" constant="true"/>
+          <speciesReference species="M_MAM00465c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00466c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00467c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00468c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00469c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00470c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00471c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00472c" stoichiometry="0.0709" constant="true"/>
+          <speciesReference species="M_MAM00474c" stoichiometry="0.0271" constant="true"/>
+          <speciesReference species="M_MAM00476c" stoichiometry="0.0228" constant="true"/>
+          <speciesReference species="M_MAM00477c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00478c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00479c" stoichiometry="0.0036" constant="true"/>
+          <speciesReference species="M_MAM00480c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00481c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00482c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00483c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00484c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00491c" stoichiometry="0.2479" constant="true"/>
+          <speciesReference species="M_MAM00492c" stoichiometry="0.0047" constant="true"/>
+          <speciesReference species="M_MAM00493c" stoichiometry="0.0054" constant="true"/>
+          <speciesReference species="M_MAM00494c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00495c" stoichiometry="0.1143" constant="true"/>
+          <speciesReference species="M_MAM00496c" stoichiometry="0.2781" constant="true"/>
+          <speciesReference species="M_MAM00497c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00498c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00499c" stoichiometry="0.1271" constant="true"/>
+          <speciesReference species="M_MAM00500c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00501c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00502c" stoichiometry="0.0005" constant="true"/>
+        </listOfReactants>
+        <listOfProducts>
+          <speciesReference species="M_MAM00485c" stoichiometry="1" constant="true"/>
+        </listOfProducts>
+      </reaction>
+      <reaction metaid="R_MAR00557" sboTerm="SBO:0000176" id="R_MAR00557" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -283895,7 +283899,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00557">
+            <rdf:Description rdf:about="#R_MAR00557">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_0557"/>
@@ -283905,71 +283909,71 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
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-          <speciesReference species="MAM00437c" stoichiometry="0.0005" constant="true"/>
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-          <speciesReference species="MAM00439c" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM00440c" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM00441c" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM00442c" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM00443c" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM00444c" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM00445c" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM00446c" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM00447c" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM00448c" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM00449c" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM00450c" stoichiometry="0.0459" constant="true"/>
-          <speciesReference species="MAM00451c" stoichiometry="0.0052" constant="true"/>
-          <speciesReference species="MAM00452c" stoichiometry="0.0221" constant="true"/>
-          <speciesReference species="MAM00453c" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM00454c" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM00455c" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM00456c" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM00457c" stoichiometry="0.0025" constant="true"/>
-          <speciesReference species="MAM00458c" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM00459c" stoichiometry="0.0067" constant="true"/>
-          <speciesReference species="MAM00460c" stoichiometry="0.0007" constant="true"/>
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-          <speciesReference species="MAM00462c" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM00463c" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM00464c" stoichiometry="0.0163" constant="true"/>
-          <speciesReference species="MAM00465c" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM00466c" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM00467c" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM00468c" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM00469c" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM00470c" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM00471c" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM00472c" stoichiometry="0.2125" constant="true"/>
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-          <speciesReference species="MAM00483c" stoichiometry="0.0005" constant="true"/>
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-          <speciesReference species="MAM00492c" stoichiometry="0.0166" constant="true"/>
-          <speciesReference species="MAM00493c" stoichiometry="0.0319" constant="true"/>
-          <speciesReference species="MAM00494c" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM00495c" stoichiometry="0.0619" constant="true"/>
-          <speciesReference species="MAM00496c" stoichiometry="0.1243" constant="true"/>
-          <speciesReference species="MAM00497c" stoichiometry="0.0005" constant="true"/>
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-          <speciesReference species="MAM00501c" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM00502c" stoichiometry="0.0005" constant="true"/>
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-        <listOfProducts>
-          <speciesReference species="MAM00486c" stoichiometry="1" constant="true"/>
-        </listOfProducts>
-      </reaction>
-      <reaction metaid="MAR00558" sboTerm="SBO:0000176" id="MAR00558" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+          <speciesReference species="M_MAM00436c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00437c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00438c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00439c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00440c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00441c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00442c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00443c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00444c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00445c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00446c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00447c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00448c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00449c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00450c" stoichiometry="0.0459" constant="true"/>
+          <speciesReference species="M_MAM00451c" stoichiometry="0.0052" constant="true"/>
+          <speciesReference species="M_MAM00452c" stoichiometry="0.0221" constant="true"/>
+          <speciesReference species="M_MAM00453c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00454c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00455c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00456c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00457c" stoichiometry="0.0025" constant="true"/>
+          <speciesReference species="M_MAM00458c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00459c" stoichiometry="0.0067" constant="true"/>
+          <speciesReference species="M_MAM00460c" stoichiometry="0.0007" constant="true"/>
+          <speciesReference species="M_MAM00461c" stoichiometry="0.0327" constant="true"/>
+          <speciesReference species="M_MAM00462c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00463c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00464c" stoichiometry="0.0163" constant="true"/>
+          <speciesReference species="M_MAM00465c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00466c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00467c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00468c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00469c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00470c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00471c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00472c" stoichiometry="0.2125" constant="true"/>
+          <speciesReference species="M_MAM00474c" stoichiometry="0.0285" constant="true"/>
+          <speciesReference species="M_MAM00476c" stoichiometry="0.0411" constant="true"/>
+          <speciesReference species="M_MAM00477c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00478c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00479c" stoichiometry="0.0011" constant="true"/>
+          <speciesReference species="M_MAM00480c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00481c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00482c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00483c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00484c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00491c" stoichiometry="0.1312" constant="true"/>
+          <speciesReference species="M_MAM00492c" stoichiometry="0.0166" constant="true"/>
+          <speciesReference species="M_MAM00493c" stoichiometry="0.0319" constant="true"/>
+          <speciesReference species="M_MAM00494c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00495c" stoichiometry="0.0619" constant="true"/>
+          <speciesReference species="M_MAM00496c" stoichiometry="0.1243" constant="true"/>
+          <speciesReference species="M_MAM00497c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00498c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00499c" stoichiometry="0.1983" constant="true"/>
+          <speciesReference species="M_MAM00500c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00501c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00502c" stoichiometry="0.0005" constant="true"/>
+        </listOfReactants>
+        <listOfProducts>
+          <speciesReference species="M_MAM00486c" stoichiometry="1" constant="true"/>
+        </listOfProducts>
+      </reaction>
+      <reaction metaid="R_MAR00558" sboTerm="SBO:0000176" id="R_MAR00558" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -283978,7 +283982,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00558">
+            <rdf:Description rdf:about="#R_MAR00558">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_0558"/>
@@ -283988,71 +283992,71 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
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-          <speciesReference species="MAM00437c" stoichiometry="0.0005" constant="true"/>
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-          <speciesReference species="MAM00439c" stoichiometry="0.0005" constant="true"/>
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-          <speciesReference species="MAM00441c" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM00442c" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM00443c" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM00444c" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM00445c" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM00446c" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM00447c" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM00448c" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM00449c" stoichiometry="0.0005" constant="true"/>
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-          <speciesReference species="MAM00451c" stoichiometry="0.0055" constant="true"/>
-          <speciesReference species="MAM00452c" stoichiometry="0.0286" constant="true"/>
-          <speciesReference species="MAM00453c" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM00454c" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM00455c" stoichiometry="0.0005" constant="true"/>
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-          <speciesReference species="MAM00458c" stoichiometry="0.0005" constant="true"/>
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-          <speciesReference species="MAM00460c" stoichiometry="0.0043" constant="true"/>
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-          <speciesReference species="MAM00463c" stoichiometry="0.0005" constant="true"/>
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-          <speciesReference species="MAM00465c" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM00466c" stoichiometry="0.0005" constant="true"/>
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-          <speciesReference species="MAM00468c" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM00469c" stoichiometry="0.0005" constant="true"/>
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-          <speciesReference species="MAM00471c" stoichiometry="0.0005" constant="true"/>
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-          <speciesReference species="MAM00483c" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM00484c" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM00491c" stoichiometry="0.0177" constant="true"/>
-          <speciesReference species="MAM00492c" stoichiometry="0.0035" constant="true"/>
-          <speciesReference species="MAM00493c" stoichiometry="0.0055" constant="true"/>
-          <speciesReference species="MAM00494c" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM00495c" stoichiometry="0.0323" constant="true"/>
-          <speciesReference species="MAM00496c" stoichiometry="0.0337" constant="true"/>
-          <speciesReference species="MAM00497c" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM00498c" stoichiometry="0.0005" constant="true"/>
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-          <speciesReference species="MAM00500c" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM00501c" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM00502c" stoichiometry="0.0005" constant="true"/>
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-        <listOfProducts>
-          <speciesReference species="MAM00488c" stoichiometry="1" constant="true"/>
-        </listOfProducts>
-      </reaction>
-      <reaction metaid="MAR00559" sboTerm="SBO:0000176" id="MAR00559" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+          <speciesReference species="M_MAM00436c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00437c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00438c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00439c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00440c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00441c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00442c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00443c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00444c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00445c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00446c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00447c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00448c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00449c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00450c" stoichiometry="0.0931" constant="true"/>
+          <speciesReference species="M_MAM00451c" stoichiometry="0.0055" constant="true"/>
+          <speciesReference species="M_MAM00452c" stoichiometry="0.0286" constant="true"/>
+          <speciesReference species="M_MAM00453c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00454c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00455c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00456c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00457c" stoichiometry="0.0025" constant="true"/>
+          <speciesReference species="M_MAM00458c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00459c" stoichiometry="0.0329" constant="true"/>
+          <speciesReference species="M_MAM00460c" stoichiometry="0.0043" constant="true"/>
+          <speciesReference species="M_MAM00461c" stoichiometry="0.0058" constant="true"/>
+          <speciesReference species="M_MAM00462c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00463c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00464c" stoichiometry="0.0174" constant="true"/>
+          <speciesReference species="M_MAM00465c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00466c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00467c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00468c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00469c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00470c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00471c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00472c" stoichiometry="0.2005" constant="true"/>
+          <speciesReference species="M_MAM00474c" stoichiometry="0.0131" constant="true"/>
+          <speciesReference species="M_MAM00476c" stoichiometry="0.0089" constant="true"/>
+          <speciesReference species="M_MAM00477c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00478c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00479c" stoichiometry="0.0011" constant="true"/>
+          <speciesReference species="M_MAM00480c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00481c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00482c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00483c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00484c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00491c" stoichiometry="0.0177" constant="true"/>
+          <speciesReference species="M_MAM00492c" stoichiometry="0.0035" constant="true"/>
+          <speciesReference species="M_MAM00493c" stoichiometry="0.0055" constant="true"/>
+          <speciesReference species="M_MAM00494c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00495c" stoichiometry="0.0323" constant="true"/>
+          <speciesReference species="M_MAM00496c" stoichiometry="0.0337" constant="true"/>
+          <speciesReference species="M_MAM00497c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00498c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00499c" stoichiometry="0.4731" constant="true"/>
+          <speciesReference species="M_MAM00500c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00501c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00502c" stoichiometry="0.0005" constant="true"/>
+        </listOfReactants>
+        <listOfProducts>
+          <speciesReference species="M_MAM00488c" stoichiometry="1" constant="true"/>
+        </listOfProducts>
+      </reaction>
+      <reaction metaid="R_MAR00559" sboTerm="SBO:0000176" id="R_MAR00559" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -284061,7 +284065,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00559">
+            <rdf:Description rdf:about="#R_MAR00559">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_0559"/>
@@ -284071,71 +284075,71 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00436c" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM00437c" stoichiometry="0.0005" constant="true"/>
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-          <speciesReference species="MAM00439c" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM00440c" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM00441c" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM00442c" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM00443c" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM00444c" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM00445c" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM00446c" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM00447c" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM00448c" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM00449c" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM00450c" stoichiometry="0.0269" constant="true"/>
-          <speciesReference species="MAM00451c" stoichiometry="0.0124" constant="true"/>
-          <speciesReference species="MAM00452c" stoichiometry="0.0043" constant="true"/>
-          <speciesReference species="MAM00453c" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM00454c" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM00455c" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM00456c" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM00457c" stoichiometry="0.0027" constant="true"/>
-          <speciesReference species="MAM00458c" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM00459c" stoichiometry="0.0101" constant="true"/>
-          <speciesReference species="MAM00460c" stoichiometry="0.0031" constant="true"/>
-          <speciesReference species="MAM00461c" stoichiometry="0.0053" constant="true"/>
-          <speciesReference species="MAM00462c" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM00463c" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM00464c" stoichiometry="0.0179" constant="true"/>
-          <speciesReference species="MAM00465c" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM00466c" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM00467c" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM00468c" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM00469c" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM00470c" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM00471c" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM00472c" stoichiometry="0.2118" constant="true"/>
-          <speciesReference species="MAM00474c" stoichiometry="0.0266" constant="true"/>
-          <speciesReference species="MAM00476c" stoichiometry="0.0228" constant="true"/>
-          <speciesReference species="MAM00477c" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM00478c" stoichiometry="0.0005" constant="true"/>
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-          <speciesReference species="MAM00480c" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM00481c" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM00482c" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM00483c" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM00484c" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM00491c" stoichiometry="0.0678" constant="true"/>
-          <speciesReference species="MAM00492c" stoichiometry="0.0019" constant="true"/>
-          <speciesReference species="MAM00493c" stoichiometry="0.0056" constant="true"/>
-          <speciesReference species="MAM00494c" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM00495c" stoichiometry="0.136" constant="true"/>
-          <speciesReference species="MAM00496c" stoichiometry="0.0678" constant="true"/>
-          <speciesReference species="MAM00497c" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM00498c" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM00499c" stoichiometry="0.3553" constant="true"/>
-          <speciesReference species="MAM00500c" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM00501c" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM00502c" stoichiometry="0.0005" constant="true"/>
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-        <listOfProducts>
-          <speciesReference species="MAM00487c" stoichiometry="1" constant="true"/>
-        </listOfProducts>
-      </reaction>
-      <reaction metaid="MAR00560" sboTerm="SBO:0000176" id="MAR00560" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+          <speciesReference species="M_MAM00436c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00437c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00438c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00439c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00440c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00441c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00442c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00443c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00444c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00445c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00446c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00447c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00448c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00449c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00450c" stoichiometry="0.0269" constant="true"/>
+          <speciesReference species="M_MAM00451c" stoichiometry="0.0124" constant="true"/>
+          <speciesReference species="M_MAM00452c" stoichiometry="0.0043" constant="true"/>
+          <speciesReference species="M_MAM00453c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00454c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00455c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00456c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00457c" stoichiometry="0.0027" constant="true"/>
+          <speciesReference species="M_MAM00458c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00459c" stoichiometry="0.0101" constant="true"/>
+          <speciesReference species="M_MAM00460c" stoichiometry="0.0031" constant="true"/>
+          <speciesReference species="M_MAM00461c" stoichiometry="0.0053" constant="true"/>
+          <speciesReference species="M_MAM00462c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00463c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00464c" stoichiometry="0.0179" constant="true"/>
+          <speciesReference species="M_MAM00465c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00466c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00467c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00468c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00469c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00470c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00471c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00472c" stoichiometry="0.2118" constant="true"/>
+          <speciesReference species="M_MAM00474c" stoichiometry="0.0266" constant="true"/>
+          <speciesReference species="M_MAM00476c" stoichiometry="0.0228" constant="true"/>
+          <speciesReference species="M_MAM00477c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00478c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00479c" stoichiometry="0.0012" constant="true"/>
+          <speciesReference species="M_MAM00480c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00481c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00482c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00483c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00484c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00491c" stoichiometry="0.0678" constant="true"/>
+          <speciesReference species="M_MAM00492c" stoichiometry="0.0019" constant="true"/>
+          <speciesReference species="M_MAM00493c" stoichiometry="0.0056" constant="true"/>
+          <speciesReference species="M_MAM00494c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00495c" stoichiometry="0.136" constant="true"/>
+          <speciesReference species="M_MAM00496c" stoichiometry="0.0678" constant="true"/>
+          <speciesReference species="M_MAM00497c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00498c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00499c" stoichiometry="0.3553" constant="true"/>
+          <speciesReference species="M_MAM00500c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00501c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00502c" stoichiometry="0.0005" constant="true"/>
+        </listOfReactants>
+        <listOfProducts>
+          <speciesReference species="M_MAM00487c" stoichiometry="1" constant="true"/>
+        </listOfProducts>
+      </reaction>
+      <reaction metaid="R_MAR00560" sboTerm="SBO:0000176" id="R_MAR00560" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -284144,7 +284148,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00560">
+            <rdf:Description rdf:about="#R_MAR00560">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_0560"/>
@@ -284154,71 +284158,71 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00436c" stoichiometry="0.002" constant="true"/>
-          <speciesReference species="MAM00437c" stoichiometry="0.002" constant="true"/>
-          <speciesReference species="MAM00438c" stoichiometry="0.002" constant="true"/>
-          <speciesReference species="MAM00439c" stoichiometry="0.002" constant="true"/>
-          <speciesReference species="MAM00440c" stoichiometry="0.002" constant="true"/>
-          <speciesReference species="MAM00441c" stoichiometry="0.002" constant="true"/>
-          <speciesReference species="MAM00442c" stoichiometry="0.002" constant="true"/>
-          <speciesReference species="MAM00443c" stoichiometry="0.002" constant="true"/>
-          <speciesReference species="MAM00444c" stoichiometry="0.002" constant="true"/>
-          <speciesReference species="MAM00445c" stoichiometry="0.002" constant="true"/>
-          <speciesReference species="MAM00446c" stoichiometry="0.002" constant="true"/>
-          <speciesReference species="MAM00447c" stoichiometry="0.002" constant="true"/>
-          <speciesReference species="MAM00448c" stoichiometry="0.002" constant="true"/>
-          <speciesReference species="MAM00449c" stoichiometry="0.002" constant="true"/>
-          <speciesReference species="MAM00450c" stoichiometry="0.003" constant="true"/>
-          <speciesReference species="MAM00451c" stoichiometry="0.002" constant="true"/>
-          <speciesReference species="MAM00452c" stoichiometry="0.0068" constant="true"/>
-          <speciesReference species="MAM00453c" stoichiometry="0.002" constant="true"/>
-          <speciesReference species="MAM00454c" stoichiometry="0.002" constant="true"/>
-          <speciesReference species="MAM00455c" stoichiometry="0.002" constant="true"/>
-          <speciesReference species="MAM00456c" stoichiometry="0.002" constant="true"/>
-          <speciesReference species="MAM00457c" stoichiometry="0.002" constant="true"/>
-          <speciesReference species="MAM00458c" stoichiometry="0.002" constant="true"/>
-          <speciesReference species="MAM00459c" stoichiometry="0.002" constant="true"/>
-          <speciesReference species="MAM00460c" stoichiometry="0.002" constant="true"/>
-          <speciesReference species="MAM00461c" stoichiometry="0.0358" constant="true"/>
-          <speciesReference species="MAM00462c" stoichiometry="0.002" constant="true"/>
-          <speciesReference species="MAM00463c" stoichiometry="0.002" constant="true"/>
-          <speciesReference species="MAM00464c" stoichiometry="0.002" constant="true"/>
-          <speciesReference species="MAM00465c" stoichiometry="0.002" constant="true"/>
-          <speciesReference species="MAM00466c" stoichiometry="0.002" constant="true"/>
-          <speciesReference species="MAM00467c" stoichiometry="0.002" constant="true"/>
-          <speciesReference species="MAM00468c" stoichiometry="0.002" constant="true"/>
-          <speciesReference species="MAM00469c" stoichiometry="0.002" constant="true"/>
-          <speciesReference species="MAM00470c" stoichiometry="0.002" constant="true"/>
-          <speciesReference species="MAM00471c" stoichiometry="0.002" constant="true"/>
-          <speciesReference species="MAM00472c" stoichiometry="0.0136" constant="true"/>
-          <speciesReference species="MAM00474c" stoichiometry="0.0453" constant="true"/>
-          <speciesReference species="MAM00476c" stoichiometry="0.002" constant="true"/>
-          <speciesReference species="MAM00477c" stoichiometry="0.002" constant="true"/>
-          <speciesReference species="MAM00478c" stoichiometry="0.002" constant="true"/>
-          <speciesReference species="MAM00479c" stoichiometry="0.002" constant="true"/>
-          <speciesReference species="MAM00480c" stoichiometry="0.002" constant="true"/>
-          <speciesReference species="MAM00481c" stoichiometry="0.002" constant="true"/>
-          <speciesReference species="MAM00482c" stoichiometry="0.002" constant="true"/>
-          <speciesReference species="MAM00483c" stoichiometry="0.002" constant="true"/>
-          <speciesReference species="MAM00484c" stoichiometry="0.002" constant="true"/>
-          <speciesReference species="MAM00491c" stoichiometry="0.025" constant="true"/>
-          <speciesReference species="MAM00492c" stoichiometry="0.0075" constant="true"/>
-          <speciesReference species="MAM00493c" stoichiometry="0.011" constant="true"/>
-          <speciesReference species="MAM00494c" stoichiometry="0.002" constant="true"/>
-          <speciesReference species="MAM00495c" stoichiometry="0.061" constant="true"/>
-          <speciesReference species="MAM00496c" stoichiometry="0.557" constant="true"/>
-          <speciesReference species="MAM00497c" stoichiometry="0.002" constant="true"/>
-          <speciesReference species="MAM00498c" stoichiometry="0.002" constant="true"/>
-          <speciesReference species="MAM00499c" stoichiometry="0.138" constant="true"/>
-          <speciesReference species="MAM00500c" stoichiometry="0.002" constant="true"/>
-          <speciesReference species="MAM00501c" stoichiometry="0.002" constant="true"/>
-          <speciesReference species="MAM00502c" stoichiometry="0.002" constant="true"/>
-        </listOfReactants>
-        <listOfProducts>
-          <speciesReference species="MAM00489c" stoichiometry="1" constant="true"/>
-        </listOfProducts>
-      </reaction>
-      <reaction metaid="MAR00561" sboTerm="SBO:0000176" id="MAR00561" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+          <speciesReference species="M_MAM00436c" stoichiometry="0.002" constant="true"/>
+          <speciesReference species="M_MAM00437c" stoichiometry="0.002" constant="true"/>
+          <speciesReference species="M_MAM00438c" stoichiometry="0.002" constant="true"/>
+          <speciesReference species="M_MAM00439c" stoichiometry="0.002" constant="true"/>
+          <speciesReference species="M_MAM00440c" stoichiometry="0.002" constant="true"/>
+          <speciesReference species="M_MAM00441c" stoichiometry="0.002" constant="true"/>
+          <speciesReference species="M_MAM00442c" stoichiometry="0.002" constant="true"/>
+          <speciesReference species="M_MAM00443c" stoichiometry="0.002" constant="true"/>
+          <speciesReference species="M_MAM00444c" stoichiometry="0.002" constant="true"/>
+          <speciesReference species="M_MAM00445c" stoichiometry="0.002" constant="true"/>
+          <speciesReference species="M_MAM00446c" stoichiometry="0.002" constant="true"/>
+          <speciesReference species="M_MAM00447c" stoichiometry="0.002" constant="true"/>
+          <speciesReference species="M_MAM00448c" stoichiometry="0.002" constant="true"/>
+          <speciesReference species="M_MAM00449c" stoichiometry="0.002" constant="true"/>
+          <speciesReference species="M_MAM00450c" stoichiometry="0.003" constant="true"/>
+          <speciesReference species="M_MAM00451c" stoichiometry="0.002" constant="true"/>
+          <speciesReference species="M_MAM00452c" stoichiometry="0.0068" constant="true"/>
+          <speciesReference species="M_MAM00453c" stoichiometry="0.002" constant="true"/>
+          <speciesReference species="M_MAM00454c" stoichiometry="0.002" constant="true"/>
+          <speciesReference species="M_MAM00455c" stoichiometry="0.002" constant="true"/>
+          <speciesReference species="M_MAM00456c" stoichiometry="0.002" constant="true"/>
+          <speciesReference species="M_MAM00457c" stoichiometry="0.002" constant="true"/>
+          <speciesReference species="M_MAM00458c" stoichiometry="0.002" constant="true"/>
+          <speciesReference species="M_MAM00459c" stoichiometry="0.002" constant="true"/>
+          <speciesReference species="M_MAM00460c" stoichiometry="0.002" constant="true"/>
+          <speciesReference species="M_MAM00461c" stoichiometry="0.0358" constant="true"/>
+          <speciesReference species="M_MAM00462c" stoichiometry="0.002" constant="true"/>
+          <speciesReference species="M_MAM00463c" stoichiometry="0.002" constant="true"/>
+          <speciesReference species="M_MAM00464c" stoichiometry="0.002" constant="true"/>
+          <speciesReference species="M_MAM00465c" stoichiometry="0.002" constant="true"/>
+          <speciesReference species="M_MAM00466c" stoichiometry="0.002" constant="true"/>
+          <speciesReference species="M_MAM00467c" stoichiometry="0.002" constant="true"/>
+          <speciesReference species="M_MAM00468c" stoichiometry="0.002" constant="true"/>
+          <speciesReference species="M_MAM00469c" stoichiometry="0.002" constant="true"/>
+          <speciesReference species="M_MAM00470c" stoichiometry="0.002" constant="true"/>
+          <speciesReference species="M_MAM00471c" stoichiometry="0.002" constant="true"/>
+          <speciesReference species="M_MAM00472c" stoichiometry="0.0136" constant="true"/>
+          <speciesReference species="M_MAM00474c" stoichiometry="0.0453" constant="true"/>
+          <speciesReference species="M_MAM00476c" stoichiometry="0.002" constant="true"/>
+          <speciesReference species="M_MAM00477c" stoichiometry="0.002" constant="true"/>
+          <speciesReference species="M_MAM00478c" stoichiometry="0.002" constant="true"/>
+          <speciesReference species="M_MAM00479c" stoichiometry="0.002" constant="true"/>
+          <speciesReference species="M_MAM00480c" stoichiometry="0.002" constant="true"/>
+          <speciesReference species="M_MAM00481c" stoichiometry="0.002" constant="true"/>
+          <speciesReference species="M_MAM00482c" stoichiometry="0.002" constant="true"/>
+          <speciesReference species="M_MAM00483c" stoichiometry="0.002" constant="true"/>
+          <speciesReference species="M_MAM00484c" stoichiometry="0.002" constant="true"/>
+          <speciesReference species="M_MAM00491c" stoichiometry="0.025" constant="true"/>
+          <speciesReference species="M_MAM00492c" stoichiometry="0.0075" constant="true"/>
+          <speciesReference species="M_MAM00493c" stoichiometry="0.011" constant="true"/>
+          <speciesReference species="M_MAM00494c" stoichiometry="0.002" constant="true"/>
+          <speciesReference species="M_MAM00495c" stoichiometry="0.061" constant="true"/>
+          <speciesReference species="M_MAM00496c" stoichiometry="0.557" constant="true"/>
+          <speciesReference species="M_MAM00497c" stoichiometry="0.002" constant="true"/>
+          <speciesReference species="M_MAM00498c" stoichiometry="0.002" constant="true"/>
+          <speciesReference species="M_MAM00499c" stoichiometry="0.138" constant="true"/>
+          <speciesReference species="M_MAM00500c" stoichiometry="0.002" constant="true"/>
+          <speciesReference species="M_MAM00501c" stoichiometry="0.002" constant="true"/>
+          <speciesReference species="M_MAM00502c" stoichiometry="0.002" constant="true"/>
+        </listOfReactants>
+        <listOfProducts>
+          <speciesReference species="M_MAM00489c" stoichiometry="1" constant="true"/>
+        </listOfProducts>
+      </reaction>
+      <reaction metaid="R_MAR00561" sboTerm="SBO:0000176" id="R_MAR00561" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -284227,7 +284231,7 @@
         </notes>
         <annotation>
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-            <rdf:Description rdf:about="#MAR00561">
+            <rdf:Description rdf:about="#R_MAR00561">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_0561"/>
@@ -284237,71 +284241,71 @@
           </rdf:RDF>
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-          <speciesReference species="MAM00494c" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM00495c" stoichiometry="0.4226" constant="true"/>
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-          <speciesReference species="MAM00497c" stoichiometry="0.0001" constant="true"/>
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-          <speciesReference species="MAM00501c" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM00502c" stoichiometry="0.0001" constant="true"/>
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-        <listOfProducts>
-          <speciesReference species="MAM00473c" stoichiometry="1" constant="true"/>
-        </listOfProducts>
-      </reaction>
-      <reaction metaid="MAR00685" sboTerm="SBO:0000176" id="MAR00685" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+          <speciesReference species="M_MAM00436c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00437c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00438c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00439c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00440c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00441c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00442c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00443c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00444c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00445c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00446c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00447c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00448c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00449c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00450c" stoichiometry="0.0081" constant="true"/>
+          <speciesReference species="M_MAM00451c" stoichiometry="0.0016" constant="true"/>
+          <speciesReference species="M_MAM00452c" stoichiometry="0.0003" constant="true"/>
+          <speciesReference species="M_MAM00453c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00454c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00455c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00456c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00457c" stoichiometry="0.0025" constant="true"/>
+          <speciesReference species="M_MAM00458c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00459c" stoichiometry="0.0018" constant="true"/>
+          <speciesReference species="M_MAM00460c" stoichiometry="0.0032" constant="true"/>
+          <speciesReference species="M_MAM00461c" stoichiometry="0.0229" constant="true"/>
+          <speciesReference species="M_MAM00462c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00463c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00464c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00465c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00466c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00467c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00468c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00469c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00470c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00471c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00472c" stoichiometry="0.0521" constant="true"/>
+          <speciesReference species="M_MAM00474c" stoichiometry="0.0217" constant="true"/>
+          <speciesReference species="M_MAM00476c" stoichiometry="0.0023" constant="true"/>
+          <speciesReference species="M_MAM00477c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00478c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00479c" stoichiometry="0.003" constant="true"/>
+          <speciesReference species="M_MAM00480c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00481c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00482c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00483c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00484c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00491c" stoichiometry="0.281" constant="true"/>
+          <speciesReference species="M_MAM00492c" stoichiometry="0.0119" constant="true"/>
+          <speciesReference species="M_MAM00493c" stoichiometry="0.0024" constant="true"/>
+          <speciesReference species="M_MAM00494c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00495c" stoichiometry="0.4226" constant="true"/>
+          <speciesReference species="M_MAM00496c" stoichiometry="0.12" constant="true"/>
+          <speciesReference species="M_MAM00497c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00498c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00499c" stoichiometry="0.0384" constant="true"/>
+          <speciesReference species="M_MAM00500c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00501c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00502c" stoichiometry="0.0001" constant="true"/>
+        </listOfReactants>
+        <listOfProducts>
+          <speciesReference species="M_MAM00473c" stoichiometry="1" constant="true"/>
+        </listOfProducts>
+      </reaction>
+      <reaction metaid="R_MAR00685" sboTerm="SBO:0000176" id="R_MAR00685" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -284310,7 +284314,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00685">
+            <rdf:Description rdf:about="#R_MAR00685">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_0685"/>
@@ -284320,71 +284324,71 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
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-        </listOfReactants>
-        <listOfProducts>
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-          <speciesReference species="MAM00008c" stoichiometry="0.0001" constant="true"/>
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-          <speciesReference species="MAM00315c" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM00341c" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM01197c" stoichiometry="0.0001" constant="true"/>
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-          <speciesReference species="MAM01583c" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM01584c" stoichiometry="0.0001" constant="true"/>
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-          <speciesReference species="MAM02674c" stoichiometry="0.64" constant="true"/>
-          <speciesReference species="MAM02675c" stoichiometry="0.0286" constant="true"/>
-          <speciesReference species="MAM02690c" stoichiometry="0.0001" constant="true"/>
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-          <speciesReference species="MAM03051c" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM03153c" stoichiometry="0.0001" constant="true"/>
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-      </reaction>
-      <reaction metaid="MAR00686" sboTerm="SBO:0000176" id="MAR00686" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+          <speciesReference species="M_MAM01813c" stoichiometry="1" constant="true"/>
+        </listOfReactants>
+        <listOfProducts>
+          <speciesReference species="M_MAM00003c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00008c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00010c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00017c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00019c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00021c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00094c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00104c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00111c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00114c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00115c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00117c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00128c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00132c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00135c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00260c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00265c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00315c" stoichiometry="0.0001" constant="true"/>
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+          <speciesReference species="M_MAM01197c" stoichiometry="0.0001" constant="true"/>
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+          <speciesReference species="M_MAM01291c" stoichiometry="0.0001" constant="true"/>
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+          <speciesReference species="M_MAM01583c" stoichiometry="0.0001" constant="true"/>
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+          <speciesReference species="M_MAM01689c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM01696c" stoichiometry="0.0013" constant="true"/>
+          <speciesReference species="M_MAM01741c" stoichiometry="0.0017" constant="true"/>
+          <speciesReference species="M_MAM01771c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM01778c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM01784c" stoichiometry="0.0013" constant="true"/>
+          <speciesReference species="M_MAM01932c" stoichiometry="0.0048" constant="true"/>
+          <speciesReference species="M_MAM02053c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM02344c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM02385c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM02387c" stoichiometry="0.0741" constant="true"/>
+          <speciesReference species="M_MAM02389c" stoichiometry="0.0037" constant="true"/>
+          <speciesReference species="M_MAM02456c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM02457c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM02494c" stoichiometry="0.0096" constant="true"/>
+          <speciesReference species="M_MAM02564c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM02613c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM02646c" stoichiometry="0.122" constant="true"/>
+          <speciesReference species="M_MAM02648c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM02674c" stoichiometry="0.64" constant="true"/>
+          <speciesReference species="M_MAM02675c" stoichiometry="0.0286" constant="true"/>
+          <speciesReference species="M_MAM02690c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM02745c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM02938c" stoichiometry="0.082" constant="true"/>
+          <speciesReference species="M_MAM02939c" stoichiometry="0.0028" constant="true"/>
+          <speciesReference species="M_MAM03045c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM03051c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM03153c" stoichiometry="0.0001" constant="true"/>
+        </listOfProducts>
+      </reaction>
+      <reaction metaid="R_MAR00686" sboTerm="SBO:0000176" id="R_MAR00686" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -284393,7 +284397,7 @@
         </notes>
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-            <rdf:Description rdf:about="#MAR00686">
+            <rdf:Description rdf:about="#R_MAR00686">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_0686"/>
@@ -284403,71 +284407,71 @@
           </rdf:RDF>
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-          <speciesReference species="MAM03153c" stoichiometry="0.0001" constant="true"/>
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-      <reaction metaid="MAR00687" sboTerm="SBO:0000176" id="MAR00687" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+          <speciesReference species="M_MAM01814c" stoichiometry="1" constant="true"/>
+        </listOfReactants>
+        <listOfProducts>
+          <speciesReference species="M_MAM00003c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00008c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00010c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00017c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00019c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00021c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00094c" stoichiometry="0.0016" constant="true"/>
+          <speciesReference species="M_MAM00104c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00111c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00114c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00115c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00117c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00128c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00132c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00135c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00260c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00265c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00315c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00341c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM01197c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM01207c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM01235c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM01238c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM01291c" stoichiometry="0.0032" constant="true"/>
+          <speciesReference species="M_MAM01362c" stoichiometry="0.0521" constant="true"/>
+          <speciesReference species="M_MAM01373c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM01432c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM01582c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM01583c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM01584c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM01585c" stoichiometry="0.0217" constant="true"/>
+          <speciesReference species="M_MAM01689c" stoichiometry="0.0081" constant="true"/>
+          <speciesReference species="M_MAM01696c" stoichiometry="0.0023" constant="true"/>
+          <speciesReference species="M_MAM01741c" stoichiometry="0.0018" constant="true"/>
+          <speciesReference species="M_MAM01771c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM01778c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM01784c" stoichiometry="0.0003" constant="true"/>
+          <speciesReference species="M_MAM01932c" stoichiometry="0.003" constant="true"/>
+          <speciesReference species="M_MAM02053c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM02344c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM02385c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM02387c" stoichiometry="0.281" constant="true"/>
+          <speciesReference species="M_MAM02389c" stoichiometry="0.0119" constant="true"/>
+          <speciesReference species="M_MAM02456c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM02457c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM02494c" stoichiometry="0.0024" constant="true"/>
+          <speciesReference species="M_MAM02564c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM02613c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM02646c" stoichiometry="0.4226" constant="true"/>
+          <speciesReference species="M_MAM02648c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM02674c" stoichiometry="0.12" constant="true"/>
+          <speciesReference species="M_MAM02675c" stoichiometry="0.0229" constant="true"/>
+          <speciesReference species="M_MAM02690c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM02745c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM02938c" stoichiometry="0.0384" constant="true"/>
+          <speciesReference species="M_MAM02939c" stoichiometry="0.0025" constant="true"/>
+          <speciesReference species="M_MAM03045c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM03051c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM03153c" stoichiometry="0.0001" constant="true"/>
+        </listOfProducts>
+      </reaction>
+      <reaction metaid="R_MAR00687" sboTerm="SBO:0000176" id="R_MAR00687" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -284476,7 +284480,7 @@
         </notes>
         <annotation>
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-            <rdf:Description rdf:about="#MAR00687">
+            <rdf:Description rdf:about="#R_MAR00687">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_0687"/>
@@ -284486,71 +284490,71 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
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-          <speciesReference species="MAM03153c" stoichiometry="0.0001" constant="true"/>
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-      <reaction metaid="MAR00688" sboTerm="SBO:0000176" id="MAR00688" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+          <speciesReference species="M_MAM01815c" stoichiometry="1" constant="true"/>
+        </listOfReactants>
+        <listOfProducts>
+          <speciesReference species="M_MAM00003c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00008c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00010c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00017c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00019c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00021c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00094c" stoichiometry="0.0011" constant="true"/>
+          <speciesReference species="M_MAM00104c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00111c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00114c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00115c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00117c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00128c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00132c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00135c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00260c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00265c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00315c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00341c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM01197c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM01207c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM01235c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM01238c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM01291c" stoichiometry="0.0022" constant="true"/>
+          <speciesReference species="M_MAM01362c" stoichiometry="0.0264" constant="true"/>
+          <speciesReference species="M_MAM01373c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM01432c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM01582c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM01583c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM01584c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM01585c" stoichiometry="0.0194" constant="true"/>
+          <speciesReference species="M_MAM01689c" stoichiometry="0.0221" constant="true"/>
+          <speciesReference species="M_MAM01696c" stoichiometry="0.0141" constant="true"/>
+          <speciesReference species="M_MAM01741c" stoichiometry="0.0038" constant="true"/>
+          <speciesReference species="M_MAM01771c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM01778c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM01784c" stoichiometry="0.0035" constant="true"/>
+          <speciesReference species="M_MAM01932c" stoichiometry="0.0081" constant="true"/>
+          <speciesReference species="M_MAM02053c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM02344c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM02385c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM02387c" stoichiometry="0.278" constant="true"/>
+          <speciesReference species="M_MAM02389c" stoichiometry="0.0023" constant="true"/>
+          <speciesReference species="M_MAM02456c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM02457c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM02494c" stoichiometry="0.003" constant="true"/>
+          <speciesReference species="M_MAM02564c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM02613c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM02646c" stoichiometry="0.4519" constant="true"/>
+          <speciesReference species="M_MAM02648c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM02674c" stoichiometry="0.0849" constant="true"/>
+          <speciesReference species="M_MAM02675c" stoichiometry="0.014" constant="true"/>
+          <speciesReference species="M_MAM02690c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM02745c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM02938c" stoichiometry="0.0584" constant="true"/>
+          <speciesReference species="M_MAM02939c" stoichiometry="0.0026" constant="true"/>
+          <speciesReference species="M_MAM03045c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM03051c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM03153c" stoichiometry="0.0001" constant="true"/>
+        </listOfProducts>
+      </reaction>
+      <reaction metaid="R_MAR00688" sboTerm="SBO:0000176" id="R_MAR00688" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -284559,7 +284563,7 @@
         </notes>
         <annotation>
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-            <rdf:Description rdf:about="#MAR00688">
+            <rdf:Description rdf:about="#R_MAR00688">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_0688"/>
@@ -284569,71 +284573,71 @@
           </rdf:RDF>
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-          <speciesReference species="MAM03153c" stoichiometry="0.0005" constant="true"/>
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-      <reaction metaid="MAR00689" sboTerm="SBO:0000176" id="MAR00689" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+          <speciesReference species="M_MAM01808c" stoichiometry="1" constant="true"/>
+        </listOfReactants>
+        <listOfProducts>
+          <speciesReference species="M_MAM00003c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00008c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00010c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00017c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00019c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00021c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00094c" stoichiometry="0.0039" constant="true"/>
+          <speciesReference species="M_MAM00104c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00111c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00114c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00115c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00117c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00128c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00132c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00135c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00260c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00265c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00315c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00341c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM01197c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM01207c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM01235c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM01238c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM01291c" stoichiometry="0.0011" constant="true"/>
+          <speciesReference species="M_MAM01362c" stoichiometry="0.0709" constant="true"/>
+          <speciesReference species="M_MAM01373c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM01432c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM01582c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM01583c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM01584c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM01585c" stoichiometry="0.0271" constant="true"/>
+          <speciesReference species="M_MAM01689c" stoichiometry="0.0252" constant="true"/>
+          <speciesReference species="M_MAM01696c" stoichiometry="0.0228" constant="true"/>
+          <speciesReference species="M_MAM01741c" stoichiometry="0.0056" constant="true"/>
+          <speciesReference species="M_MAM01771c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM01778c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM01784c" stoichiometry="0.0109" constant="true"/>
+          <speciesReference species="M_MAM01932c" stoichiometry="0.0036" constant="true"/>
+          <speciesReference species="M_MAM02053c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM02344c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM02385c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM02387c" stoichiometry="0.2479" constant="true"/>
+          <speciesReference species="M_MAM02389c" stoichiometry="0.0047" constant="true"/>
+          <speciesReference species="M_MAM02456c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM02457c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM02494c" stoichiometry="0.0054" constant="true"/>
+          <speciesReference species="M_MAM02564c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM02613c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM02646c" stoichiometry="0.1143" constant="true"/>
+          <speciesReference species="M_MAM02648c" stoichiometry="0.0178" constant="true"/>
+          <speciesReference species="M_MAM02674c" stoichiometry="0.2781" constant="true"/>
+          <speciesReference species="M_MAM02675c" stoichiometry="0.0105" constant="true"/>
+          <speciesReference species="M_MAM02690c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM02745c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM02938c" stoichiometry="0.1271" constant="true"/>
+          <speciesReference species="M_MAM02939c" stoichiometry="0.0026" constant="true"/>
+          <speciesReference species="M_MAM03045c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM03051c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM03153c" stoichiometry="0.0005" constant="true"/>
+        </listOfProducts>
+      </reaction>
+      <reaction metaid="R_MAR00689" sboTerm="SBO:0000176" id="R_MAR00689" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -284642,7 +284646,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00689">
+            <rdf:Description rdf:about="#R_MAR00689">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_0689"/>
@@ -284652,71 +284656,71 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
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-        </listOfReactants>
-        <listOfProducts>
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-          <speciesReference species="MAM03153c" stoichiometry="0.0005" constant="true"/>
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-      <reaction metaid="MAR00690" sboTerm="SBO:0000176" id="MAR00690" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+          <speciesReference species="M_MAM01809c" stoichiometry="1" constant="true"/>
+        </listOfReactants>
+        <listOfProducts>
+          <speciesReference species="M_MAM00003c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00008c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00010c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00017c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00019c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00021c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00094c" stoichiometry="0.0052" constant="true"/>
+          <speciesReference species="M_MAM00104c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00111c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00114c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00115c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00117c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00128c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00132c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00135c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00260c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00265c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00315c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00341c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM01197c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM01207c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM01235c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM01238c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM01291c" stoichiometry="0.0007" constant="true"/>
+          <speciesReference species="M_MAM01362c" stoichiometry="0.2125" constant="true"/>
+          <speciesReference species="M_MAM01373c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM01432c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM01582c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM01583c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM01584c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM01585c" stoichiometry="0.0285" constant="true"/>
+          <speciesReference species="M_MAM01689c" stoichiometry="0.0459" constant="true"/>
+          <speciesReference species="M_MAM01696c" stoichiometry="0.0411" constant="true"/>
+          <speciesReference species="M_MAM01741c" stoichiometry="0.0067" constant="true"/>
+          <speciesReference species="M_MAM01771c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM01778c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM01784c" stoichiometry="0.0221" constant="true"/>
+          <speciesReference species="M_MAM01932c" stoichiometry="0.0011" constant="true"/>
+          <speciesReference species="M_MAM02053c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM02344c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM02385c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM02387c" stoichiometry="0.1312" constant="true"/>
+          <speciesReference species="M_MAM02389c" stoichiometry="0.0166" constant="true"/>
+          <speciesReference species="M_MAM02456c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM02457c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM02494c" stoichiometry="0.0319" constant="true"/>
+          <speciesReference species="M_MAM02564c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM02613c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM02646c" stoichiometry="0.0619" constant="true"/>
+          <speciesReference species="M_MAM02648c" stoichiometry="0.0163" constant="true"/>
+          <speciesReference species="M_MAM02674c" stoichiometry="0.1243" constant="true"/>
+          <speciesReference species="M_MAM02675c" stoichiometry="0.0327" constant="true"/>
+          <speciesReference species="M_MAM02690c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM02745c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM02938c" stoichiometry="0.1983" constant="true"/>
+          <speciesReference species="M_MAM02939c" stoichiometry="0.0025" constant="true"/>
+          <speciesReference species="M_MAM03045c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM03051c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM03153c" stoichiometry="0.0005" constant="true"/>
+        </listOfProducts>
+      </reaction>
+      <reaction metaid="R_MAR00690" sboTerm="SBO:0000176" id="R_MAR00690" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -284725,7 +284729,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00690">
+            <rdf:Description rdf:about="#R_MAR00690">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_0690"/>
@@ -284735,71 +284739,71 @@
           </rdf:RDF>
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         <listOfReactants>
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-        </listOfReactants>
-        <listOfProducts>
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-          <speciesReference species="MAM01771c" stoichiometry="0.0005" constant="true"/>
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-          <speciesReference species="MAM02674c" stoichiometry="0.0337" constant="true"/>
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-          <speciesReference species="MAM03051c" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM03153c" stoichiometry="0.0005" constant="true"/>
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-      </reaction>
-      <reaction metaid="MAR00691" sboTerm="SBO:0000176" id="MAR00691" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+          <speciesReference species="M_MAM01811c" stoichiometry="1" constant="true"/>
+        </listOfReactants>
+        <listOfProducts>
+          <speciesReference species="M_MAM00003c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00008c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00010c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00017c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00019c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00021c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00094c" stoichiometry="0.0055" constant="true"/>
+          <speciesReference species="M_MAM00104c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00111c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00114c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00115c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00117c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00128c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00132c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00135c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00260c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00265c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00315c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00341c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM01197c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM01207c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM01235c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM01238c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM01291c" stoichiometry="0.0043" constant="true"/>
+          <speciesReference species="M_MAM01362c" stoichiometry="0.2005" constant="true"/>
+          <speciesReference species="M_MAM01373c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM01432c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM01582c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM01583c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM01584c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM01585c" stoichiometry="0.0131" constant="true"/>
+          <speciesReference species="M_MAM01689c" stoichiometry="0.0931" constant="true"/>
+          <speciesReference species="M_MAM01696c" stoichiometry="0.0089" constant="true"/>
+          <speciesReference species="M_MAM01741c" stoichiometry="0.0329" constant="true"/>
+          <speciesReference species="M_MAM01771c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM01778c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM01784c" stoichiometry="0.0286" constant="true"/>
+          <speciesReference species="M_MAM01932c" stoichiometry="0.0011" constant="true"/>
+          <speciesReference species="M_MAM02053c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM02344c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM02385c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM02387c" stoichiometry="0.0177" constant="true"/>
+          <speciesReference species="M_MAM02389c" stoichiometry="0.0035" constant="true"/>
+          <speciesReference species="M_MAM02456c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM02457c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM02494c" stoichiometry="0.0055" constant="true"/>
+          <speciesReference species="M_MAM02564c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM02613c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM02646c" stoichiometry="0.0323" constant="true"/>
+          <speciesReference species="M_MAM02648c" stoichiometry="0.0174" constant="true"/>
+          <speciesReference species="M_MAM02674c" stoichiometry="0.0337" constant="true"/>
+          <speciesReference species="M_MAM02675c" stoichiometry="0.0058" constant="true"/>
+          <speciesReference species="M_MAM02690c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM02745c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM02938c" stoichiometry="0.4731" constant="true"/>
+          <speciesReference species="M_MAM02939c" stoichiometry="0.0025" constant="true"/>
+          <speciesReference species="M_MAM03045c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM03051c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM03153c" stoichiometry="0.0005" constant="true"/>
+        </listOfProducts>
+      </reaction>
+      <reaction metaid="R_MAR00691" sboTerm="SBO:0000176" id="R_MAR00691" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -284808,7 +284812,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00691">
+            <rdf:Description rdf:about="#R_MAR00691">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_0691"/>
@@ -284818,71 +284822,71 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01810c" stoichiometry="1" constant="true"/>
-        </listOfReactants>
-        <listOfProducts>
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-          <speciesReference species="MAM00132c" stoichiometry="0.0005" constant="true"/>
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-          <speciesReference species="MAM00265c" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM00315c" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM00341c" stoichiometry="0.0005" constant="true"/>
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-          <speciesReference species="MAM03153c" stoichiometry="0.0005" constant="true"/>
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-      </reaction>
-      <reaction metaid="MAR00692" sboTerm="SBO:0000176" id="MAR00692" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+          <speciesReference species="M_MAM01810c" stoichiometry="1" constant="true"/>
+        </listOfReactants>
+        <listOfProducts>
+          <speciesReference species="M_MAM00003c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00008c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00010c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00017c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00019c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00021c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00094c" stoichiometry="0.0124" constant="true"/>
+          <speciesReference species="M_MAM00104c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00111c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00114c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00115c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00117c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00128c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00132c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00135c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00260c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00265c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00315c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00341c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM01197c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM01207c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM01235c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM01238c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM01291c" stoichiometry="0.0031" constant="true"/>
+          <speciesReference species="M_MAM01362c" stoichiometry="0.2118" constant="true"/>
+          <speciesReference species="M_MAM01373c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM01432c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM01582c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM01583c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM01584c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM01585c" stoichiometry="0.0266" constant="true"/>
+          <speciesReference species="M_MAM01689c" stoichiometry="0.0269" constant="true"/>
+          <speciesReference species="M_MAM01696c" stoichiometry="0.0228" constant="true"/>
+          <speciesReference species="M_MAM01741c" stoichiometry="0.0101" constant="true"/>
+          <speciesReference species="M_MAM01771c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM01778c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM01784c" stoichiometry="0.0043" constant="true"/>
+          <speciesReference species="M_MAM01932c" stoichiometry="0.0012" constant="true"/>
+          <speciesReference species="M_MAM02053c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM02344c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM02385c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM02387c" stoichiometry="0.0678" constant="true"/>
+          <speciesReference species="M_MAM02389c" stoichiometry="0.0019" constant="true"/>
+          <speciesReference species="M_MAM02456c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM02457c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM02494c" stoichiometry="0.0056" constant="true"/>
+          <speciesReference species="M_MAM02564c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM02613c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM02646c" stoichiometry="0.136" constant="true"/>
+          <speciesReference species="M_MAM02648c" stoichiometry="0.0179" constant="true"/>
+          <speciesReference species="M_MAM02674c" stoichiometry="0.0678" constant="true"/>
+          <speciesReference species="M_MAM02675c" stoichiometry="0.0053" constant="true"/>
+          <speciesReference species="M_MAM02690c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM02745c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM02938c" stoichiometry="0.3553" constant="true"/>
+          <speciesReference species="M_MAM02939c" stoichiometry="0.0027" constant="true"/>
+          <speciesReference species="M_MAM03045c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM03051c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM03153c" stoichiometry="0.0005" constant="true"/>
+        </listOfProducts>
+      </reaction>
+      <reaction metaid="R_MAR00692" sboTerm="SBO:0000176" id="R_MAR00692" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -284891,7 +284895,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00692">
+            <rdf:Description rdf:about="#R_MAR00692">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_0692"/>
@@ -284901,79 +284905,79 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01812c" stoichiometry="1" constant="true"/>
-        </listOfReactants>
-        <listOfProducts>
-          <speciesReference species="MAM00003c" stoichiometry="0.002" constant="true"/>
-          <speciesReference species="MAM00008c" stoichiometry="0.002" constant="true"/>
-          <speciesReference species="MAM00010c" stoichiometry="0.002" constant="true"/>
-          <speciesReference species="MAM00017c" stoichiometry="0.002" constant="true"/>
-          <speciesReference species="MAM00019c" stoichiometry="0.002" constant="true"/>
-          <speciesReference species="MAM00021c" stoichiometry="0.002" constant="true"/>
-          <speciesReference species="MAM00094c" stoichiometry="0.002" constant="true"/>
-          <speciesReference species="MAM00104c" stoichiometry="0.002" constant="true"/>
-          <speciesReference species="MAM00111c" stoichiometry="0.002" constant="true"/>
-          <speciesReference species="MAM00114c" stoichiometry="0.002" constant="true"/>
-          <speciesReference species="MAM00115c" stoichiometry="0.002" constant="true"/>
-          <speciesReference species="MAM00117c" stoichiometry="0.002" constant="true"/>
-          <speciesReference species="MAM00128c" stoichiometry="0.002" constant="true"/>
-          <speciesReference species="MAM00132c" stoichiometry="0.002" constant="true"/>
-          <speciesReference species="MAM00135c" stoichiometry="0.002" constant="true"/>
-          <speciesReference species="MAM00260c" stoichiometry="0.002" constant="true"/>
-          <speciesReference species="MAM00265c" stoichiometry="0.002" constant="true"/>
-          <speciesReference species="MAM00315c" stoichiometry="0.002" constant="true"/>
-          <speciesReference species="MAM00341c" stoichiometry="0.002" constant="true"/>
-          <speciesReference species="MAM01197c" stoichiometry="0.002" constant="true"/>
-          <speciesReference species="MAM01207c" stoichiometry="0.002" constant="true"/>
-          <speciesReference species="MAM01235c" stoichiometry="0.002" constant="true"/>
-          <speciesReference species="MAM01238c" stoichiometry="0.002" constant="true"/>
-          <speciesReference species="MAM01291c" stoichiometry="0.002" constant="true"/>
-          <speciesReference species="MAM01362c" stoichiometry="0.0136" constant="true"/>
-          <speciesReference species="MAM01373c" stoichiometry="0.002" constant="true"/>
-          <speciesReference species="MAM01432c" stoichiometry="0.002" constant="true"/>
-          <speciesReference species="MAM01582c" stoichiometry="0.002" constant="true"/>
-          <speciesReference species="MAM01583c" stoichiometry="0.002" constant="true"/>
-          <speciesReference species="MAM01584c" stoichiometry="0.002" constant="true"/>
-          <speciesReference species="MAM01585c" stoichiometry="0.0453" constant="true"/>
-          <speciesReference species="MAM01689c" stoichiometry="0.003" constant="true"/>
-          <speciesReference species="MAM01696c" stoichiometry="0.002" constant="true"/>
-          <speciesReference species="MAM01741c" stoichiometry="0.002" constant="true"/>
-          <speciesReference species="MAM01771c" stoichiometry="0.002" constant="true"/>
-          <speciesReference species="MAM01778c" stoichiometry="0.002" constant="true"/>
-          <speciesReference species="MAM01784c" stoichiometry="0.0068" constant="true"/>
-          <speciesReference species="MAM01932c" stoichiometry="0.002" constant="true"/>
-          <speciesReference species="MAM02053c" stoichiometry="0.002" constant="true"/>
-          <speciesReference species="MAM02344c" stoichiometry="0.002" constant="true"/>
-          <speciesReference species="MAM02385c" stoichiometry="0.002" constant="true"/>
-          <speciesReference species="MAM02387c" stoichiometry="0.025" constant="true"/>
-          <speciesReference species="MAM02389c" stoichiometry="0.0075" constant="true"/>
-          <speciesReference species="MAM02456c" stoichiometry="0.002" constant="true"/>
-          <speciesReference species="MAM02457c" stoichiometry="0.002" constant="true"/>
-          <speciesReference species="MAM02494c" stoichiometry="0.011" constant="true"/>
-          <speciesReference species="MAM02564c" stoichiometry="0.002" constant="true"/>
-          <speciesReference species="MAM02613c" stoichiometry="0.002" constant="true"/>
-          <speciesReference species="MAM02646c" stoichiometry="0.061" constant="true"/>
-          <speciesReference species="MAM02648c" stoichiometry="0.002" constant="true"/>
-          <speciesReference species="MAM02674c" stoichiometry="0.557" constant="true"/>
-          <speciesReference species="MAM02675c" stoichiometry="0.0358" constant="true"/>
-          <speciesReference species="MAM02690c" stoichiometry="0.002" constant="true"/>
-          <speciesReference species="MAM02745c" stoichiometry="0.002" constant="true"/>
-          <speciesReference species="MAM02938c" stoichiometry="0.138" constant="true"/>
-          <speciesReference species="MAM02939c" stoichiometry="0.002" constant="true"/>
-          <speciesReference species="MAM03045c" stoichiometry="0.002" constant="true"/>
-          <speciesReference species="MAM03051c" stoichiometry="0.002" constant="true"/>
-          <speciesReference species="MAM03153c" stoichiometry="0.002" constant="true"/>
-        </listOfProducts>
-      </reaction>
-      <reaction metaid="MAR01185" sboTerm="SBO:0000176" id="MAR01185" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
-        <notes>
-          <body xmlns="http://www.w3.org/1999/xhtml">
-            <p>Confidence Level: 0</p>
-          </body>
-        </notes>
-        <annotation>
-          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01185">
+          <speciesReference species="M_MAM01812c" stoichiometry="1" constant="true"/>
+        </listOfReactants>
+        <listOfProducts>
+          <speciesReference species="M_MAM00003c" stoichiometry="0.002" constant="true"/>
+          <speciesReference species="M_MAM00008c" stoichiometry="0.002" constant="true"/>
+          <speciesReference species="M_MAM00010c" stoichiometry="0.002" constant="true"/>
+          <speciesReference species="M_MAM00017c" stoichiometry="0.002" constant="true"/>
+          <speciesReference species="M_MAM00019c" stoichiometry="0.002" constant="true"/>
+          <speciesReference species="M_MAM00021c" stoichiometry="0.002" constant="true"/>
+          <speciesReference species="M_MAM00094c" stoichiometry="0.002" constant="true"/>
+          <speciesReference species="M_MAM00104c" stoichiometry="0.002" constant="true"/>
+          <speciesReference species="M_MAM00111c" stoichiometry="0.002" constant="true"/>
+          <speciesReference species="M_MAM00114c" stoichiometry="0.002" constant="true"/>
+          <speciesReference species="M_MAM00115c" stoichiometry="0.002" constant="true"/>
+          <speciesReference species="M_MAM00117c" stoichiometry="0.002" constant="true"/>
+          <speciesReference species="M_MAM00128c" stoichiometry="0.002" constant="true"/>
+          <speciesReference species="M_MAM00132c" stoichiometry="0.002" constant="true"/>
+          <speciesReference species="M_MAM00135c" stoichiometry="0.002" constant="true"/>
+          <speciesReference species="M_MAM00260c" stoichiometry="0.002" constant="true"/>
+          <speciesReference species="M_MAM00265c" stoichiometry="0.002" constant="true"/>
+          <speciesReference species="M_MAM00315c" stoichiometry="0.002" constant="true"/>
+          <speciesReference species="M_MAM00341c" stoichiometry="0.002" constant="true"/>
+          <speciesReference species="M_MAM01197c" stoichiometry="0.002" constant="true"/>
+          <speciesReference species="M_MAM01207c" stoichiometry="0.002" constant="true"/>
+          <speciesReference species="M_MAM01235c" stoichiometry="0.002" constant="true"/>
+          <speciesReference species="M_MAM01238c" stoichiometry="0.002" constant="true"/>
+          <speciesReference species="M_MAM01291c" stoichiometry="0.002" constant="true"/>
+          <speciesReference species="M_MAM01362c" stoichiometry="0.0136" constant="true"/>
+          <speciesReference species="M_MAM01373c" stoichiometry="0.002" constant="true"/>
+          <speciesReference species="M_MAM01432c" stoichiometry="0.002" constant="true"/>
+          <speciesReference species="M_MAM01582c" stoichiometry="0.002" constant="true"/>
+          <speciesReference species="M_MAM01583c" stoichiometry="0.002" constant="true"/>
+          <speciesReference species="M_MAM01584c" stoichiometry="0.002" constant="true"/>
+          <speciesReference species="M_MAM01585c" stoichiometry="0.0453" constant="true"/>
+          <speciesReference species="M_MAM01689c" stoichiometry="0.003" constant="true"/>
+          <speciesReference species="M_MAM01696c" stoichiometry="0.002" constant="true"/>
+          <speciesReference species="M_MAM01741c" stoichiometry="0.002" constant="true"/>
+          <speciesReference species="M_MAM01771c" stoichiometry="0.002" constant="true"/>
+          <speciesReference species="M_MAM01778c" stoichiometry="0.002" constant="true"/>
+          <speciesReference species="M_MAM01784c" stoichiometry="0.0068" constant="true"/>
+          <speciesReference species="M_MAM01932c" stoichiometry="0.002" constant="true"/>
+          <speciesReference species="M_MAM02053c" stoichiometry="0.002" constant="true"/>
+          <speciesReference species="M_MAM02344c" stoichiometry="0.002" constant="true"/>
+          <speciesReference species="M_MAM02385c" stoichiometry="0.002" constant="true"/>
+          <speciesReference species="M_MAM02387c" stoichiometry="0.025" constant="true"/>
+          <speciesReference species="M_MAM02389c" stoichiometry="0.0075" constant="true"/>
+          <speciesReference species="M_MAM02456c" stoichiometry="0.002" constant="true"/>
+          <speciesReference species="M_MAM02457c" stoichiometry="0.002" constant="true"/>
+          <speciesReference species="M_MAM02494c" stoichiometry="0.011" constant="true"/>
+          <speciesReference species="M_MAM02564c" stoichiometry="0.002" constant="true"/>
+          <speciesReference species="M_MAM02613c" stoichiometry="0.002" constant="true"/>
+          <speciesReference species="M_MAM02646c" stoichiometry="0.061" constant="true"/>
+          <speciesReference species="M_MAM02648c" stoichiometry="0.002" constant="true"/>
+          <speciesReference species="M_MAM02674c" stoichiometry="0.557" constant="true"/>
+          <speciesReference species="M_MAM02675c" stoichiometry="0.0358" constant="true"/>
+          <speciesReference species="M_MAM02690c" stoichiometry="0.002" constant="true"/>
+          <speciesReference species="M_MAM02745c" stoichiometry="0.002" constant="true"/>
+          <speciesReference species="M_MAM02938c" stoichiometry="0.138" constant="true"/>
+          <speciesReference species="M_MAM02939c" stoichiometry="0.002" constant="true"/>
+          <speciesReference species="M_MAM03045c" stoichiometry="0.002" constant="true"/>
+          <speciesReference species="M_MAM03051c" stoichiometry="0.002" constant="true"/>
+          <speciesReference species="M_MAM03153c" stoichiometry="0.002" constant="true"/>
+        </listOfProducts>
+      </reaction>
+      <reaction metaid="R_MAR01185" sboTerm="SBO:0000176" id="R_MAR01185" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+        <notes>
+          <body xmlns="http://www.w3.org/1999/xhtml">
+            <p>Confidence Level: 0</p>
+          </body>
+        </notes>
+        <annotation>
+          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+            <rdf:Description rdf:about="#R_MAR01185">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_1185"/>
@@ -284983,16 +284987,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00935m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00935m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00042m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00042m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01227" sboTerm="SBO:0000176" id="MAR01227" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01227" sboTerm="SBO:0000176" id="R_MAR01227" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -285000,7 +285004,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01227">
+            <rdf:Description rdf:about="#R_MAR01227">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_1227"/>
@@ -285010,16 +285014,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00936m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00936m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00042m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00042m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05233" sboTerm="SBO:0000176" id="MAR05233" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05233" sboTerm="SBO:0000176" id="R_MAR05233" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -285027,7 +285031,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05233">
+            <rdf:Description rdf:about="#R_MAR05233">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_5233"/>
@@ -285037,18 +285041,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02047l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02047l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01350l" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02039l" stoichiometry="30" constant="true"/>
-          <speciesReference species="MAM02684l" stoichiometry="90" constant="true"/>
-          <speciesReference species="MAM02685l" stoichiometry="25" constant="true"/>
-          <speciesReference species="MAM02808l" stoichiometry="30" constant="true"/>
-          <speciesReference species="MAM02908l" stoichiometry="75" constant="true"/>
+          <speciesReference species="M_MAM01350l" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02039l" stoichiometry="30" constant="true"/>
+          <speciesReference species="M_MAM02684l" stoichiometry="90" constant="true"/>
+          <speciesReference species="M_MAM02685l" stoichiometry="25" constant="true"/>
+          <speciesReference species="M_MAM02808l" stoichiometry="30" constant="true"/>
+          <speciesReference species="M_MAM02908l" stoichiometry="75" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05234" sboTerm="SBO:0000176" id="MAR05234" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05234" sboTerm="SBO:0000176" id="R_MAR05234" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -285056,7 +285060,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05234">
+            <rdf:Description rdf:about="#R_MAR05234">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_5234"/>
@@ -285066,20 +285070,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01350r" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM01450r" stoichiometry="20" constant="true"/>
-          <speciesReference species="MAM01451r" stoichiometry="160" constant="true"/>
-          <speciesReference species="MAM02039r" stoichiometry="30" constant="true"/>
-          <speciesReference species="MAM02684r" stoichiometry="90" constant="true"/>
-          <speciesReference species="MAM02685r" stoichiometry="25" constant="true"/>
-          <speciesReference species="MAM02808r" stoichiometry="30" constant="true"/>
-          <speciesReference species="MAM02908r" stoichiometry="75" constant="true"/>
+          <speciesReference species="M_MAM01350r" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01450r" stoichiometry="20" constant="true"/>
+          <speciesReference species="M_MAM01451r" stoichiometry="160" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="30" constant="true"/>
+          <speciesReference species="M_MAM02684r" stoichiometry="90" constant="true"/>
+          <speciesReference species="M_MAM02685r" stoichiometry="25" constant="true"/>
+          <speciesReference species="M_MAM02808r" stoichiometry="30" constant="true"/>
+          <speciesReference species="M_MAM02908r" stoichiometry="75" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02048r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02048r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05238" sboTerm="SBO:0000176" id="MAR05238" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05238" sboTerm="SBO:0000176" id="R_MAR05238" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -285087,7 +285091,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05238">
+            <rdf:Description rdf:about="#R_MAR05238">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_5238"/>
@@ -285097,19 +285101,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02352l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02352l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00656l" stoichiometry="25" constant="true"/>
-          <speciesReference species="MAM01351l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01427l" stoichiometry="110" constant="true"/>
-          <speciesReference species="MAM02039l" stoichiometry="220" constant="true"/>
-          <speciesReference species="MAM02684l" stoichiometry="425" constant="true"/>
-          <speciesReference species="MAM02685l" stoichiometry="30" constant="true"/>
-          <speciesReference species="MAM02908l" stoichiometry="160" constant="true"/>
+          <speciesReference species="M_MAM00656l" stoichiometry="25" constant="true"/>
+          <speciesReference species="M_MAM01351l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01427l" stoichiometry="110" constant="true"/>
+          <speciesReference species="M_MAM02039l" stoichiometry="220" constant="true"/>
+          <speciesReference species="M_MAM02684l" stoichiometry="425" constant="true"/>
+          <speciesReference species="M_MAM02685l" stoichiometry="30" constant="true"/>
+          <speciesReference species="M_MAM02908l" stoichiometry="160" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05239" sboTerm="SBO:0000176" id="MAR05239" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05239" sboTerm="SBO:0000176" id="R_MAR05239" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -285117,7 +285121,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05239">
+            <rdf:Description rdf:about="#R_MAR05239">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_5239"/>
@@ -285127,21 +285131,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00656r" stoichiometry="25" constant="true"/>
-          <speciesReference species="MAM01351r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01427r" stoichiometry="110" constant="true"/>
-          <speciesReference species="MAM01450r" stoichiometry="680" constant="true"/>
-          <speciesReference species="MAM01451r" stoichiometry="1515" constant="true"/>
-          <speciesReference species="MAM02039r" stoichiometry="220" constant="true"/>
-          <speciesReference species="MAM02684r" stoichiometry="425" constant="true"/>
-          <speciesReference species="MAM02685r" stoichiometry="30" constant="true"/>
-          <speciesReference species="MAM02908r" stoichiometry="160" constant="true"/>
+          <speciesReference species="M_MAM00656r" stoichiometry="25" constant="true"/>
+          <speciesReference species="M_MAM01351r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01427r" stoichiometry="110" constant="true"/>
+          <speciesReference species="M_MAM01450r" stoichiometry="680" constant="true"/>
+          <speciesReference species="M_MAM01451r" stoichiometry="1515" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="220" constant="true"/>
+          <speciesReference species="M_MAM02684r" stoichiometry="425" constant="true"/>
+          <speciesReference species="M_MAM02685r" stoichiometry="30" constant="true"/>
+          <speciesReference species="M_MAM02908r" stoichiometry="160" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02353r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02353r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05243" sboTerm="SBO:0000176" id="MAR05243" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05243" sboTerm="SBO:0000176" id="R_MAR05243" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -285149,7 +285153,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05243">
+            <rdf:Description rdf:about="#R_MAR05243">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_5243"/>
@@ -285159,22 +285163,22 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03146l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03146l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00656l" stoichiometry="165" constant="true"/>
-          <speciesReference species="MAM01351l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01359l" stoichiometry="7" constant="true"/>
-          <speciesReference species="MAM01450l" stoichiometry="500" constant="true"/>
-          <speciesReference species="MAM01451l" stoichiometry="1645" constant="true"/>
-          <speciesReference species="MAM02039l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02684l" stoichiometry="2165" constant="true"/>
-          <speciesReference species="MAM02685l" stoichiometry="185" constant="true"/>
-          <speciesReference species="MAM02750l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02908l" stoichiometry="755" constant="true"/>
+          <speciesReference species="M_MAM00656l" stoichiometry="165" constant="true"/>
+          <speciesReference species="M_MAM01351l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01359l" stoichiometry="7" constant="true"/>
+          <speciesReference species="M_MAM01450l" stoichiometry="500" constant="true"/>
+          <speciesReference species="M_MAM01451l" stoichiometry="1645" constant="true"/>
+          <speciesReference species="M_MAM02039l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02684l" stoichiometry="2165" constant="true"/>
+          <speciesReference species="M_MAM02685l" stoichiometry="185" constant="true"/>
+          <speciesReference species="M_MAM02750l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02908l" stoichiometry="755" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05244" sboTerm="SBO:0000176" id="MAR05244" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05244" sboTerm="SBO:0000176" id="R_MAR05244" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -285182,7 +285186,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05244">
+            <rdf:Description rdf:about="#R_MAR05244">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_5244"/>
@@ -285192,23 +285196,23 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00656r" stoichiometry="165" constant="true"/>
-          <speciesReference species="MAM01351r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01359r" stoichiometry="7" constant="true"/>
-          <speciesReference species="MAM01450r" stoichiometry="500" constant="true"/>
-          <speciesReference species="MAM01451r" stoichiometry="1645" constant="true"/>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02684r" stoichiometry="2165" constant="true"/>
-          <speciesReference species="MAM02685r" stoichiometry="185" constant="true"/>
-          <speciesReference species="MAM02750r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02908r" stoichiometry="755" constant="true"/>
-          <speciesReference species="MAM02959r" stoichiometry="10385" constant="true"/>
+          <speciesReference species="M_MAM00656r" stoichiometry="165" constant="true"/>
+          <speciesReference species="M_MAM01351r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01359r" stoichiometry="7" constant="true"/>
+          <speciesReference species="M_MAM01450r" stoichiometry="500" constant="true"/>
+          <speciesReference species="M_MAM01451r" stoichiometry="1645" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02684r" stoichiometry="2165" constant="true"/>
+          <speciesReference species="M_MAM02685r" stoichiometry="185" constant="true"/>
+          <speciesReference species="M_MAM02750r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02908r" stoichiometry="755" constant="true"/>
+          <speciesReference species="M_MAM02959r" stoichiometry="10385" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03147r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03147r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05247" sboTerm="SBO:0000176" id="MAR05247" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05247" sboTerm="SBO:0000176" id="R_MAR05247" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -285216,7 +285220,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05247">
+            <rdf:Description rdf:about="#R_MAR05247">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_5247"/>
@@ -285226,24 +285230,24 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01569l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01569l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00656l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01352l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01359l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01450l" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM01451l" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM02039l" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02684l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02685l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02750l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02808l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02908l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02956l" stoichiometry="90" constant="true"/>
+          <speciesReference species="M_MAM00656l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01352l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01359l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450l" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01451l" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM02039l" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02684l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02685l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02750l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02808l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02908l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02956l" stoichiometry="90" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05257" sboTerm="SBO:0000176" id="MAR05257" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05257" sboTerm="SBO:0000176" id="R_MAR05257" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -285252,7 +285256,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05257">
+            <rdf:Description rdf:about="#R_MAR05257">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_5257"/>
@@ -285262,79 +285266,79 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01808r" stoichiometry="1" constant="true"/>
-        </listOfReactants>
-        <listOfProducts>
-          <speciesReference species="MAM00003r" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM00008r" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM00010r" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM00017r" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM00019r" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM00021r" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM00094r" stoichiometry="0.0039" constant="true"/>
-          <speciesReference species="MAM00104r" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM00111r" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM00114r" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM00115r" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM00117r" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM00128r" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM00132r" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM00135r" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM00260r" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM00265r" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM00315r" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM00341r" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM01197r" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM01207r" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM01235r" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM01238r" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM01291r" stoichiometry="0.0011" constant="true"/>
-          <speciesReference species="MAM01362r" stoichiometry="0.0709" constant="true"/>
-          <speciesReference species="MAM01373r" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM01432r" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM01582r" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM01583r" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM01584r" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM01585r" stoichiometry="0.0271" constant="true"/>
-          <speciesReference species="MAM01689r" stoichiometry="0.0252" constant="true"/>
-          <speciesReference species="MAM01696r" stoichiometry="0.0228" constant="true"/>
-          <speciesReference species="MAM01741r" stoichiometry="0.0056" constant="true"/>
-          <speciesReference species="MAM01771r" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM01778r" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM01784r" stoichiometry="0.0109" constant="true"/>
-          <speciesReference species="MAM01932r" stoichiometry="0.0036" constant="true"/>
-          <speciesReference species="MAM02053r" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM02344r" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM02385r" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM02387r" stoichiometry="0.2479" constant="true"/>
-          <speciesReference species="MAM02389r" stoichiometry="0.0047" constant="true"/>
-          <speciesReference species="MAM02456r" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM02457r" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM02494r" stoichiometry="0.0054" constant="true"/>
-          <speciesReference species="MAM02564r" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM02613r" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM02646r" stoichiometry="0.1143" constant="true"/>
-          <speciesReference species="MAM02648r" stoichiometry="0.0178" constant="true"/>
-          <speciesReference species="MAM02674r" stoichiometry="0.2781" constant="true"/>
-          <speciesReference species="MAM02675r" stoichiometry="0.0105" constant="true"/>
-          <speciesReference species="MAM02690r" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM02745r" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM02938r" stoichiometry="0.1271" constant="true"/>
-          <speciesReference species="MAM02939r" stoichiometry="0.0026" constant="true"/>
-          <speciesReference species="MAM03045r" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM03051r" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM03153r" stoichiometry="0.0005" constant="true"/>
-        </listOfProducts>
-      </reaction>
-      <reaction metaid="MAR09022" sboTerm="SBO:0000176" id="MAR09022" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
-        <notes>
-          <body xmlns="http://www.w3.org/1999/xhtml">
-            <p>Confidence Level: 0</p>
-          </body>
-        </notes>
-        <annotation>
-          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09022">
+          <speciesReference species="M_MAM01808r" stoichiometry="1" constant="true"/>
+        </listOfReactants>
+        <listOfProducts>
+          <speciesReference species="M_MAM00003r" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00008r" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00010r" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00017r" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00019r" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00021r" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00094r" stoichiometry="0.0039" constant="true"/>
+          <speciesReference species="M_MAM00104r" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00111r" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00114r" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00115r" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00117r" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00128r" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00132r" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00135r" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00260r" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00265r" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00315r" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM00341r" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM01197r" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM01207r" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM01235r" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM01238r" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM01291r" stoichiometry="0.0011" constant="true"/>
+          <speciesReference species="M_MAM01362r" stoichiometry="0.0709" constant="true"/>
+          <speciesReference species="M_MAM01373r" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM01432r" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM01582r" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM01583r" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM01584r" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM01585r" stoichiometry="0.0271" constant="true"/>
+          <speciesReference species="M_MAM01689r" stoichiometry="0.0252" constant="true"/>
+          <speciesReference species="M_MAM01696r" stoichiometry="0.0228" constant="true"/>
+          <speciesReference species="M_MAM01741r" stoichiometry="0.0056" constant="true"/>
+          <speciesReference species="M_MAM01771r" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM01778r" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM01784r" stoichiometry="0.0109" constant="true"/>
+          <speciesReference species="M_MAM01932r" stoichiometry="0.0036" constant="true"/>
+          <speciesReference species="M_MAM02053r" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM02344r" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM02385r" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM02387r" stoichiometry="0.2479" constant="true"/>
+          <speciesReference species="M_MAM02389r" stoichiometry="0.0047" constant="true"/>
+          <speciesReference species="M_MAM02456r" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM02457r" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM02494r" stoichiometry="0.0054" constant="true"/>
+          <speciesReference species="M_MAM02564r" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM02613r" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM02646r" stoichiometry="0.1143" constant="true"/>
+          <speciesReference species="M_MAM02648r" stoichiometry="0.0178" constant="true"/>
+          <speciesReference species="M_MAM02674r" stoichiometry="0.2781" constant="true"/>
+          <speciesReference species="M_MAM02675r" stoichiometry="0.0105" constant="true"/>
+          <speciesReference species="M_MAM02690r" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM02745r" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM02938r" stoichiometry="0.1271" constant="true"/>
+          <speciesReference species="M_MAM02939r" stoichiometry="0.0026" constant="true"/>
+          <speciesReference species="M_MAM03045r" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM03051r" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM03153r" stoichiometry="0.0005" constant="true"/>
+        </listOfProducts>
+      </reaction>
+      <reaction metaid="R_MAR09022" sboTerm="SBO:0000176" id="R_MAR09022" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+        <notes>
+          <body xmlns="http://www.w3.org/1999/xhtml">
+            <p>Confidence Level: 0</p>
+          </body>
+        </notes>
+        <annotation>
+          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+            <rdf:Description rdf:about="#R_MAR09022">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_9022"/>
@@ -285344,14 +285348,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02957e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02957e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02956e" stoichiometry="0.5" constant="true"/>
-          <speciesReference species="MAM02959e" stoichiometry="0.5" constant="true"/>
+          <speciesReference species="M_MAM02956e" stoichiometry="0.5" constant="true"/>
+          <speciesReference species="M_MAM02959e" stoichiometry="0.5" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR00004" sboTerm="SBO:0000185" id="MAR00004" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00004" sboTerm="SBO:0000185" id="R_MAR00004" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -285359,7 +285363,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00004">
+            <rdf:Description rdf:about="#R_MAR00004">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_0004"/>
@@ -285369,13 +285373,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00503e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00503e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00503c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00503c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR00006" sboTerm="SBO:0000176" id="MAR00006" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00006" sboTerm="SBO:0000176" id="R_MAR00006" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -285383,7 +285387,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00006">
+            <rdf:Description rdf:about="#R_MAR00006">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.34"/>
@@ -285395,11 +285399,11 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03147e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03147e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02959e" stoichiometry="10385" constant="true"/>
-          <speciesReference species="MAM03146e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02959e" stoichiometry="10385" constant="true"/>
+          <speciesReference species="M_MAM03146e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -285412,7 +285416,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00007" sboTerm="SBO:0000176" id="MAR00007" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00007" sboTerm="SBO:0000176" id="R_MAR00007" name="triacylglycerol acylhydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -285420,7 +285424,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00007">
+            <rdf:Description rdf:about="#R_MAR00007">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.34"/>
@@ -285432,12 +285436,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02959e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02959e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00241e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01820e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00241e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01820e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -285447,7 +285451,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00008" sboTerm="SBO:0000176" id="MAR00008" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00008" sboTerm="SBO:0000176" id="R_MAR00008" name="1,2-diacyl-sn-glycerol acylhydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -285455,7 +285459,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00008">
+            <rdf:Description rdf:about="#R_MAR00008">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.34"/>
@@ -285467,12 +285471,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00241e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00241e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00510e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01820e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00510e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01820e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -285482,7 +285486,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00009" sboTerm="SBO:0000185" id="MAR00009" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00009" sboTerm="SBO:0000185" id="R_MAR00009" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -285490,7 +285494,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00009">
+            <rdf:Description rdf:about="#R_MAR00009">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_0009"/>
@@ -285500,13 +285504,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00510e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00510e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00510c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00510c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR00015" sboTerm="SBO:0000176" id="MAR00015" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00015" sboTerm="SBO:0000176" id="R_MAR00015" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -285514,7 +285518,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00015">
+            <rdf:Description rdf:about="#R_MAR00015">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_0015"/>
@@ -285524,79 +285528,79 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02560e" stoichiometry="1" constant="true"/>
-        </listOfReactants>
-        <listOfProducts>
-          <speciesReference species="MAM00003e" stoichiometry="0.0048" constant="true"/>
-          <speciesReference species="MAM00008e" stoichiometry="0.0016" constant="true"/>
-          <speciesReference species="MAM00010e" stoichiometry="0.0016" constant="true"/>
-          <speciesReference species="MAM00017e" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM00019e" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM00021e" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM00094e" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM00104e" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM00111e" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM00114e" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM00115e" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM00117e" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM00128e" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM00132e" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM00135e" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM00260e" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM00265e" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM00315e" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM00341e" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM01197e" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM01207e" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM01235e" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM01238e" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM01291e" stoichiometry="0.0017" constant="true"/>
-          <speciesReference species="MAM01362e" stoichiometry="0.0137" constant="true"/>
-          <speciesReference species="MAM01373e" stoichiometry="0.0007" constant="true"/>
-          <speciesReference species="MAM01432e" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM01582e" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM01583e" stoichiometry="0.0002" constant="true"/>
-          <speciesReference species="MAM01584e" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM01585e" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM01689e" stoichiometry="0.0046" constant="true"/>
-          <speciesReference species="MAM01696e" stoichiometry="0.0025" constant="true"/>
-          <speciesReference species="MAM01741e" stoichiometry="0.0019" constant="true"/>
-          <speciesReference species="MAM01771e" stoichiometry="0.0011" constant="true"/>
-          <speciesReference species="MAM01778e" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM01784e" stoichiometry="0.002" constant="true"/>
-          <speciesReference species="MAM01932e" stoichiometry="0.0048" constant="true"/>
-          <speciesReference species="MAM02053e" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM02344e" stoichiometry="0.0034" constant="true"/>
-          <speciesReference species="MAM02385e" stoichiometry="0.0012" constant="true"/>
-          <speciesReference species="MAM02387e" stoichiometry="0.071" constant="true"/>
-          <speciesReference species="MAM02389e" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM02456e" stoichiometry="0.0056" constant="true"/>
-          <speciesReference species="MAM02457e" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM02494e" stoichiometry="0.0283" constant="true"/>
-          <speciesReference species="MAM02564e" stoichiometry="0.0003" constant="true"/>
-          <speciesReference species="MAM02613e" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM02646e" stoichiometry="0.3746" constant="true"/>
-          <speciesReference species="MAM02648e" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM02674e" stoichiometry="0.2949" constant="true"/>
-          <speciesReference species="MAM02675e" stoichiometry="0.0686" constant="true"/>
-          <speciesReference species="MAM02690e" stoichiometry="0.003" constant="true"/>
-          <speciesReference species="MAM02745e" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM02938e" stoichiometry="0.1031" constant="true"/>
-          <speciesReference species="MAM02939e" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM03045e" stoichiometry="0.0002" constant="true"/>
-          <speciesReference species="MAM03051e" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM03153e" stoichiometry="0.0001" constant="true"/>
-        </listOfProducts>
-      </reaction>
-      <reaction metaid="MAR00016" sboTerm="SBO:0000176" id="MAR00016" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
-        <notes>
-          <body xmlns="http://www.w3.org/1999/xhtml">
-            <p>Confidence Level: 0</p>
-          </body>
-        </notes>
-        <annotation>
-          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00016">
+          <speciesReference species="M_MAM02560e" stoichiometry="1" constant="true"/>
+        </listOfReactants>
+        <listOfProducts>
+          <speciesReference species="M_MAM00003e" stoichiometry="0.0048" constant="true"/>
+          <speciesReference species="M_MAM00008e" stoichiometry="0.0016" constant="true"/>
+          <speciesReference species="M_MAM00010e" stoichiometry="0.0016" constant="true"/>
+          <speciesReference species="M_MAM00017e" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00019e" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00021e" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00094e" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00104e" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00111e" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00114e" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00115e" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00117e" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00128e" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00132e" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00135e" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00260e" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00265e" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00315e" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00341e" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM01197e" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM01207e" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM01235e" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM01238e" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM01291e" stoichiometry="0.0017" constant="true"/>
+          <speciesReference species="M_MAM01362e" stoichiometry="0.0137" constant="true"/>
+          <speciesReference species="M_MAM01373e" stoichiometry="0.0007" constant="true"/>
+          <speciesReference species="M_MAM01432e" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM01582e" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM01583e" stoichiometry="0.0002" constant="true"/>
+          <speciesReference species="M_MAM01584e" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM01585e" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM01689e" stoichiometry="0.0046" constant="true"/>
+          <speciesReference species="M_MAM01696e" stoichiometry="0.0025" constant="true"/>
+          <speciesReference species="M_MAM01741e" stoichiometry="0.0019" constant="true"/>
+          <speciesReference species="M_MAM01771e" stoichiometry="0.0011" constant="true"/>
+          <speciesReference species="M_MAM01778e" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM01784e" stoichiometry="0.002" constant="true"/>
+          <speciesReference species="M_MAM01932e" stoichiometry="0.0048" constant="true"/>
+          <speciesReference species="M_MAM02053e" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM02344e" stoichiometry="0.0034" constant="true"/>
+          <speciesReference species="M_MAM02385e" stoichiometry="0.0012" constant="true"/>
+          <speciesReference species="M_MAM02387e" stoichiometry="0.071" constant="true"/>
+          <speciesReference species="M_MAM02389e" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM02456e" stoichiometry="0.0056" constant="true"/>
+          <speciesReference species="M_MAM02457e" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM02494e" stoichiometry="0.0283" constant="true"/>
+          <speciesReference species="M_MAM02564e" stoichiometry="0.0003" constant="true"/>
+          <speciesReference species="M_MAM02613e" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM02646e" stoichiometry="0.3746" constant="true"/>
+          <speciesReference species="M_MAM02648e" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM02674e" stoichiometry="0.2949" constant="true"/>
+          <speciesReference species="M_MAM02675e" stoichiometry="0.0686" constant="true"/>
+          <speciesReference species="M_MAM02690e" stoichiometry="0.003" constant="true"/>
+          <speciesReference species="M_MAM02745e" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM02938e" stoichiometry="0.1031" constant="true"/>
+          <speciesReference species="M_MAM02939e" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM03045e" stoichiometry="0.0002" constant="true"/>
+          <speciesReference species="M_MAM03051e" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM03153e" stoichiometry="0.0001" constant="true"/>
+        </listOfProducts>
+      </reaction>
+      <reaction metaid="R_MAR00016" sboTerm="SBO:0000176" id="R_MAR00016" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+        <notes>
+          <body xmlns="http://www.w3.org/1999/xhtml">
+            <p>Confidence Level: 0</p>
+          </body>
+        </notes>
+        <annotation>
+          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+            <rdf:Description rdf:about="#R_MAR00016">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_0016"/>
@@ -285606,79 +285610,79 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00003e" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM00008e" stoichiometry="0.0023" constant="true"/>
-          <speciesReference species="MAM00010e" stoichiometry="0.0003" constant="true"/>
-          <speciesReference species="MAM00017e" stoichiometry="0.0002" constant="true"/>
-          <speciesReference species="MAM00019e" stoichiometry="0.003" constant="true"/>
-          <speciesReference species="MAM00021e" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM00094e" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM00104e" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM00111e" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM00114e" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM00115e" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM00117e" stoichiometry="0.0004" constant="true"/>
-          <speciesReference species="MAM00128e" stoichiometry="0.0023" constant="true"/>
-          <speciesReference species="MAM00132e" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM00135e" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM00260e" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM00265e" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM00315e" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM00341e" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM01197e" stoichiometry="0.0045" constant="true"/>
-          <speciesReference species="MAM01207e" stoichiometry="0.0002" constant="true"/>
-          <speciesReference species="MAM01235e" stoichiometry="0.001" constant="true"/>
-          <speciesReference species="MAM01238e" stoichiometry="0.0037" constant="true"/>
-          <speciesReference species="MAM01291e" stoichiometry="0.0008" constant="true"/>
-          <speciesReference species="MAM01362e" stoichiometry="0.0051" constant="true"/>
-          <speciesReference species="MAM01373e" stoichiometry="0.0002" constant="true"/>
-          <speciesReference species="MAM01432e" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM01582e" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM01583e" stoichiometry="0.0002" constant="true"/>
-          <speciesReference species="MAM01584e" stoichiometry="0.0046" constant="true"/>
-          <speciesReference species="MAM01585e" stoichiometry="0.0204" constant="true"/>
-          <speciesReference species="MAM01689e" stoichiometry="0.0012" constant="true"/>
-          <speciesReference species="MAM01696e" stoichiometry="0.0021" constant="true"/>
-          <speciesReference species="MAM01741e" stoichiometry="0.0009" constant="true"/>
-          <speciesReference species="MAM01771e" stoichiometry="0.0009" constant="true"/>
-          <speciesReference species="MAM01778e" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM01784e" stoichiometry="0.0009" constant="true"/>
-          <speciesReference species="MAM01932e" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM02053e" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM02344e" stoichiometry="0.0061" constant="true"/>
-          <speciesReference species="MAM02385e" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM02387e" stoichiometry="0.1573" constant="true"/>
-          <speciesReference species="MAM02389e" stoichiometry="0.0073" constant="true"/>
-          <speciesReference species="MAM02456e" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM02457e" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM02494e" stoichiometry="0.035" constant="true"/>
-          <speciesReference species="MAM02564e" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM02613e" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM02646e" stoichiometry="0.383" constant="true"/>
-          <speciesReference species="MAM02648e" stoichiometry="0.0004" constant="true"/>
-          <speciesReference species="MAM02674e" stoichiometry="0.2478" constant="true"/>
-          <speciesReference species="MAM02675e" stoichiometry="0.0395" constant="true"/>
-          <speciesReference species="MAM02690e" stoichiometry="0.0039" constant="true"/>
-          <speciesReference species="MAM02745e" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM02938e" stoichiometry="0.0613" constant="true"/>
-          <speciesReference species="MAM02939e" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM03045e" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM03051e" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM03153e" stoichiometry="0.0001" constant="true"/>
-        </listOfReactants>
-        <listOfProducts>
-          <speciesReference species="MAM02561e" stoichiometry="1" constant="true"/>
-        </listOfProducts>
-      </reaction>
-      <reaction metaid="MAR00017" sboTerm="SBO:0000176" id="MAR00017" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
-        <notes>
-          <body xmlns="http://www.w3.org/1999/xhtml">
-            <p>Confidence Level: 0</p>
-          </body>
-        </notes>
-        <annotation>
-          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00017">
+          <speciesReference species="M_MAM00003e" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00008e" stoichiometry="0.0023" constant="true"/>
+          <speciesReference species="M_MAM00010e" stoichiometry="0.0003" constant="true"/>
+          <speciesReference species="M_MAM00017e" stoichiometry="0.0002" constant="true"/>
+          <speciesReference species="M_MAM00019e" stoichiometry="0.003" constant="true"/>
+          <speciesReference species="M_MAM00021e" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00094e" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00104e" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00111e" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00114e" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00115e" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00117e" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM00128e" stoichiometry="0.0023" constant="true"/>
+          <speciesReference species="M_MAM00132e" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00135e" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00260e" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00265e" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00315e" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM00341e" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM01197e" stoichiometry="0.0045" constant="true"/>
+          <speciesReference species="M_MAM01207e" stoichiometry="0.0002" constant="true"/>
+          <speciesReference species="M_MAM01235e" stoichiometry="0.001" constant="true"/>
+          <speciesReference species="M_MAM01238e" stoichiometry="0.0037" constant="true"/>
+          <speciesReference species="M_MAM01291e" stoichiometry="0.0008" constant="true"/>
+          <speciesReference species="M_MAM01362e" stoichiometry="0.0051" constant="true"/>
+          <speciesReference species="M_MAM01373e" stoichiometry="0.0002" constant="true"/>
+          <speciesReference species="M_MAM01432e" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM01582e" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM01583e" stoichiometry="0.0002" constant="true"/>
+          <speciesReference species="M_MAM01584e" stoichiometry="0.0046" constant="true"/>
+          <speciesReference species="M_MAM01585e" stoichiometry="0.0204" constant="true"/>
+          <speciesReference species="M_MAM01689e" stoichiometry="0.0012" constant="true"/>
+          <speciesReference species="M_MAM01696e" stoichiometry="0.0021" constant="true"/>
+          <speciesReference species="M_MAM01741e" stoichiometry="0.0009" constant="true"/>
+          <speciesReference species="M_MAM01771e" stoichiometry="0.0009" constant="true"/>
+          <speciesReference species="M_MAM01778e" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM01784e" stoichiometry="0.0009" constant="true"/>
+          <speciesReference species="M_MAM01932e" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM02053e" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM02344e" stoichiometry="0.0061" constant="true"/>
+          <speciesReference species="M_MAM02385e" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM02387e" stoichiometry="0.1573" constant="true"/>
+          <speciesReference species="M_MAM02389e" stoichiometry="0.0073" constant="true"/>
+          <speciesReference species="M_MAM02456e" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM02457e" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM02494e" stoichiometry="0.035" constant="true"/>
+          <speciesReference species="M_MAM02564e" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM02613e" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM02646e" stoichiometry="0.383" constant="true"/>
+          <speciesReference species="M_MAM02648e" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM02674e" stoichiometry="0.2478" constant="true"/>
+          <speciesReference species="M_MAM02675e" stoichiometry="0.0395" constant="true"/>
+          <speciesReference species="M_MAM02690e" stoichiometry="0.0039" constant="true"/>
+          <speciesReference species="M_MAM02745e" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM02938e" stoichiometry="0.0613" constant="true"/>
+          <speciesReference species="M_MAM02939e" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM03045e" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM03051e" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM03153e" stoichiometry="0.0001" constant="true"/>
+        </listOfReactants>
+        <listOfProducts>
+          <speciesReference species="M_MAM02561e" stoichiometry="1" constant="true"/>
+        </listOfProducts>
+      </reaction>
+      <reaction metaid="R_MAR00017" sboTerm="SBO:0000176" id="R_MAR00017" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+        <notes>
+          <body xmlns="http://www.w3.org/1999/xhtml">
+            <p>Confidence Level: 0</p>
+          </body>
+        </notes>
+        <annotation>
+          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+            <rdf:Description rdf:about="#R_MAR00017">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_0017"/>
@@ -285688,20 +285692,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02909e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02909e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01410e" stoichiometry="0.125" constant="true"/>
-          <speciesReference species="MAM01648e" stoichiometry="0.125" constant="true"/>
-          <speciesReference species="MAM02108e" stoichiometry="0.125" constant="true"/>
-          <speciesReference species="MAM02120e" stoichiometry="0.125" constant="true"/>
-          <speciesReference species="MAM02614e" stoichiometry="0.125" constant="true"/>
-          <speciesReference species="MAM02642e" stoichiometry="0.125" constant="true"/>
-          <speciesReference species="MAM03117e" stoichiometry="0.125" constant="true"/>
-          <speciesReference species="MAM03134e" stoichiometry="0.125" constant="true"/>
+          <speciesReference species="M_MAM01410e" stoichiometry="0.125" constant="true"/>
+          <speciesReference species="M_MAM01648e" stoichiometry="0.125" constant="true"/>
+          <speciesReference species="M_MAM02108e" stoichiometry="0.125" constant="true"/>
+          <speciesReference species="M_MAM02120e" stoichiometry="0.125" constant="true"/>
+          <speciesReference species="M_MAM02614e" stoichiometry="0.125" constant="true"/>
+          <speciesReference species="M_MAM02642e" stoichiometry="0.125" constant="true"/>
+          <speciesReference species="M_MAM03117e" stoichiometry="0.125" constant="true"/>
+          <speciesReference species="M_MAM03134e" stoichiometry="0.125" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR00018" sboTerm="SBO:0000185" id="MAR00018" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00018" sboTerm="SBO:0000185" id="R_MAR00018" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -285709,7 +285713,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00018">
+            <rdf:Description rdf:about="#R_MAR00018">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR96700"/>
@@ -285724,16 +285728,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01450c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01450e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Npc1a"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00019" sboTerm="SBO:0000185" id="MAR00019" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00019" sboTerm="SBO:0000185" id="R_MAR00019" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -285741,7 +285745,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00019">
+            <rdf:Description rdf:about="#R_MAR00019">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_0019"/>
@@ -285751,10 +285755,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01451e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01451e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01451l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01451l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -285765,7 +285769,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00155" sboTerm="SBO:0000185" id="MAR00155" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00155" sboTerm="SBO:0000185" id="R_MAR00155" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -285773,7 +285777,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00155">
+            <rdf:Description rdf:about="#R_MAR00155">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_0155"/>
@@ -285785,10 +285789,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01410e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01410e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01410c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01410c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -285799,7 +285803,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00164" sboTerm="SBO:0000185" id="MAR00164" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00164" sboTerm="SBO:0000185" id="R_MAR00164" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -285807,7 +285811,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00164">
+            <rdf:Description rdf:about="#R_MAR00164">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_0164"/>
@@ -285819,10 +285823,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03134e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03134e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03134c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03134c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -285833,7 +285837,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00167" sboTerm="SBO:0000185" id="MAR00167" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00167" sboTerm="SBO:0000185" id="R_MAR00167" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -285841,7 +285845,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00167">
+            <rdf:Description rdf:about="#R_MAR00167">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_0167"/>
@@ -285853,10 +285857,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02120e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02120e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02120c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02120c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -285867,7 +285871,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00170" sboTerm="SBO:0000185" id="MAR00170" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00170" sboTerm="SBO:0000185" id="R_MAR00170" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -285875,7 +285879,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00170">
+            <rdf:Description rdf:about="#R_MAR00170">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_0170"/>
@@ -285887,10 +285891,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02108e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02108e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02108c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02108c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -285901,7 +285905,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00173" sboTerm="SBO:0000185" id="MAR00173" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00173" sboTerm="SBO:0000185" id="R_MAR00173" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -285909,7 +285913,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00173">
+            <rdf:Description rdf:about="#R_MAR00173">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/OCTAt"/>
@@ -285922,10 +285926,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02642e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02642e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02642c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02642c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -285936,7 +285940,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00176" sboTerm="SBO:0000185" id="MAR00176" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00176" sboTerm="SBO:0000185" id="R_MAR00176" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -285944,7 +285948,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00176">
+            <rdf:Description rdf:about="#R_MAR00176">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_0176"/>
@@ -285956,10 +285960,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02614e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02614e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02614c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02614c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -285970,7 +285974,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00179" sboTerm="SBO:0000185" id="MAR00179" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00179" sboTerm="SBO:0000185" id="R_MAR00179" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -285979,7 +285983,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00179">
+            <rdf:Description rdf:about="#R_MAR00179">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/DCATDc"/>
@@ -285991,10 +285995,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01648e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01648e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01648c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01648c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -286005,7 +286009,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00183" sboTerm="SBO:0000185" id="MAR00183" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00183" sboTerm="SBO:0000185" id="R_MAR00183" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -286013,7 +286017,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00183">
+            <rdf:Description rdf:about="#R_MAR00183">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_0183"/>
@@ -286025,10 +286029,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03117e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03117e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03117c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03117c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -286039,7 +286043,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00187" sboTerm="SBO:0000185" id="MAR00187" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00187" sboTerm="SBO:0000185" id="R_MAR00187" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -286048,7 +286052,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00187">
+            <rdf:Description rdf:about="#R_MAR00187">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/r2444"/>
@@ -286062,10 +286066,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02344e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02344e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02344c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02344c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -286076,7 +286080,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00190" sboTerm="SBO:0000185" id="MAR00190" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00190" sboTerm="SBO:0000185" id="R_MAR00190" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -286085,7 +286089,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00190">
+            <rdf:Description rdf:about="#R_MAR00190">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105499"/>
@@ -286097,18 +286101,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02344c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02344c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02344e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02344e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR00191" sboTerm="SBO:0000185" id="MAR00191" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00191" sboTerm="SBO:0000185" id="R_MAR00191" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -286116,7 +286120,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00191">
+            <rdf:Description rdf:about="#R_MAR00191">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_0191"/>
@@ -286128,10 +286132,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03051e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03051e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03051c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03051c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -286142,7 +286146,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00195" sboTerm="SBO:0000185" id="MAR00195" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00195" sboTerm="SBO:0000185" id="R_MAR00195" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -286151,7 +286155,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00195">
+            <rdf:Description rdf:about="#R_MAR00195">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/TTDCAtr"/>
@@ -286164,10 +286168,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02494e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02494e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02494c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02494c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -286178,7 +286182,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00199" sboTerm="SBO:0000185" id="MAR00199" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00199" sboTerm="SBO:0000185" id="R_MAR00199" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -286186,7 +286190,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00199">
+            <rdf:Description rdf:about="#R_MAR00199">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/TTDCEAt"/>
@@ -286199,10 +286203,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00128e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00128e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00128c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00128c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -286213,7 +286217,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00203" sboTerm="SBO:0000185" id="MAR00203" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00203" sboTerm="SBO:0000185" id="R_MAR00203" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -286221,7 +286225,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00203">
+            <rdf:Description rdf:about="#R_MAR00203">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_0203"/>
@@ -286233,10 +286237,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00117e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00117e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00117c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00117c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -286247,7 +286251,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00208" sboTerm="SBO:0000185" id="MAR00208" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00208" sboTerm="SBO:0000185" id="R_MAR00208" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -286255,7 +286259,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00208">
+            <rdf:Description rdf:about="#R_MAR00208">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_0208"/>
@@ -286267,10 +286271,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02745e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02745e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02745c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02745c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -286281,7 +286285,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00212" sboTerm="SBO:0000185" id="MAR00212" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00212" sboTerm="SBO:0000185" id="R_MAR00212" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -286289,7 +286293,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00212">
+            <rdf:Description rdf:about="#R_MAR00212">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PTDCAt"/>
@@ -286302,10 +286306,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02690e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02690e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02690c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02690c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -286316,7 +286320,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00216" sboTerm="SBO:0000185" id="MAR00216" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00216" sboTerm="SBO:0000185" id="R_MAR00216" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -286325,7 +286329,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00216">
+            <rdf:Description rdf:about="#R_MAR00216">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/HDCAt"/>
@@ -286339,10 +286343,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02674e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02674e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02674c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02674c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -286353,7 +286357,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00225" sboTerm="SBO:0000185" id="MAR00225" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00225" sboTerm="SBO:0000185" id="R_MAR00225" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -286362,7 +286366,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00225">
+            <rdf:Description rdf:about="#R_MAR00225">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/HDCEAt"/>
@@ -286376,10 +286380,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02675e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02675e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02675c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02675c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -286390,7 +286394,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00232" sboTerm="SBO:0000185" id="MAR00232" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00232" sboTerm="SBO:0000185" id="R_MAR00232" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -286398,7 +286402,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00232">
+            <rdf:Description rdf:about="#R_MAR00232">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/HMR_0232"/>
@@ -286411,10 +286415,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01197e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01197e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01197c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01197c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -286425,7 +286429,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00236" sboTerm="SBO:0000185" id="MAR00236" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00236" sboTerm="SBO:0000185" id="R_MAR00236" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -286433,7 +286437,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00236">
+            <rdf:Description rdf:about="#R_MAR00236">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/HPDCAt"/>
@@ -286446,10 +286450,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02456e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02456e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02456c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02456c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -286460,7 +286464,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00240" sboTerm="SBO:0000185" id="MAR00240" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00240" sboTerm="SBO:0000185" id="R_MAR00240" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -286468,7 +286472,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00240">
+            <rdf:Description rdf:about="#R_MAR00240">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_0240"/>
@@ -286480,10 +286484,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00003e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00003e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00003c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00003c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -286494,7 +286498,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00244" sboTerm="SBO:0000185" id="MAR00244" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00244" sboTerm="SBO:0000185" id="R_MAR00244" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -286502,7 +286506,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00244">
+            <rdf:Description rdf:about="#R_MAR00244">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/HMR_0244"/>
@@ -286515,10 +286519,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01238e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01238e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01238c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01238c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -286529,7 +286533,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00248" sboTerm="SBO:0000185" id="MAR00248" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00248" sboTerm="SBO:0000185" id="R_MAR00248" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -286538,7 +286542,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00248">
+            <rdf:Description rdf:about="#R_MAR00248">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/STRDNCt"/>
@@ -286552,10 +286556,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02938e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02938e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02938c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02938c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -286566,7 +286570,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00254" sboTerm="SBO:0000185" id="MAR00254" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00254" sboTerm="SBO:0000185" id="R_MAR00254" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -286574,7 +286578,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00254">
+            <rdf:Description rdf:about="#R_MAR00254">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/HMR_0254"/>
@@ -286587,10 +286591,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00019e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00019e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00019c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00019c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -286601,7 +286605,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00258" sboTerm="SBO:0000185" id="MAR00258" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00258" sboTerm="SBO:0000185" id="R_MAR00258" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -286609,7 +286613,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00258">
+            <rdf:Description rdf:about="#R_MAR00258">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/VACCt"/>
@@ -286622,10 +286626,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01585e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01585e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01585c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01585c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -286636,7 +286640,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00262" sboTerm="SBO:0000185" id="MAR00262" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00262" sboTerm="SBO:0000185" id="R_MAR00262" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -286645,7 +286649,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00262">
+            <rdf:Description rdf:about="#R_MAR00262">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/OCDCEAt"/>
@@ -286659,10 +286663,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02646e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02646e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02646c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02646c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -286673,7 +286677,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00266" sboTerm="SBO:0000185" id="MAR00266" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00266" sboTerm="SBO:0000185" id="R_MAR00266" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -286682,7 +286686,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00266">
+            <rdf:Description rdf:about="#R_MAR00266">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ELAIDt"/>
@@ -286696,10 +286700,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01778e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01778e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01778c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01778c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -286710,7 +286714,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00270" sboTerm="SBO:0000185" id="MAR00270" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00270" sboTerm="SBO:0000185" id="R_MAR00270" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -286718,7 +286722,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00270">
+            <rdf:Description rdf:about="#R_MAR00270">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_0270"/>
@@ -286730,10 +286734,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00115e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00115e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00115c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00115c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -286744,7 +286748,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00274" sboTerm="SBO:0000185" id="MAR00274" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00274" sboTerm="SBO:0000185" id="R_MAR00274" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -286752,7 +286756,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00274">
+            <rdf:Description rdf:about="#R_MAR00274">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/LNELDCt"/>
@@ -286764,10 +286768,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00104e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00104e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00104c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00104c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -286778,7 +286782,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00278" sboTerm="SBO:0000185" id="MAR00278" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00278" sboTerm="SBO:0000185" id="R_MAR00278" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -286786,7 +286790,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00278">
+            <rdf:Description rdf:about="#R_MAR00278">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_0278"/>
@@ -286798,10 +286802,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02613e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02613e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02613c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02613c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -286812,7 +286816,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00282" sboTerm="SBO:0000185" id="MAR00282" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00282" sboTerm="SBO:0000185" id="R_MAR00282" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -286820,7 +286824,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00282">
+            <rdf:Description rdf:about="#R_MAR00282">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ARACHt"/>
@@ -286833,10 +286837,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01771e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01771e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01771c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01771c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -286847,7 +286851,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00288" sboTerm="SBO:0000185" id="MAR00288" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00288" sboTerm="SBO:0000185" id="R_MAR00288" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -286855,7 +286859,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00288">
+            <rdf:Description rdf:about="#R_MAR00288">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_0288"/>
@@ -286867,10 +286871,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00017e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00017e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00017c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00017c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -286881,7 +286885,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00292" sboTerm="SBO:0000185" id="MAR00292" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00292" sboTerm="SBO:0000185" id="R_MAR00292" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -286889,7 +286893,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00292">
+            <rdf:Description rdf:about="#R_MAR00292">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/HMR_0292"/>
@@ -286902,10 +286906,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01584e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01584e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01584c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01584c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -286916,7 +286920,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00296" sboTerm="SBO:0000185" id="MAR00296" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00296" sboTerm="SBO:0000185" id="R_MAR00296" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -286924,7 +286928,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00296">
+            <rdf:Description rdf:about="#R_MAR00296">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/HMR_0296"/>
@@ -286937,10 +286941,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01235e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01235e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01235c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01235c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -286951,7 +286955,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00300" sboTerm="SBO:0000185" id="MAR00300" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00300" sboTerm="SBO:0000185" id="R_MAR00300" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -286959,7 +286963,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00300">
+            <rdf:Description rdf:about="#R_MAR00300">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_0300"/>
@@ -286971,10 +286975,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01207e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01207e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01207c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01207c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -286985,7 +286989,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00304" sboTerm="SBO:0000185" id="MAR00304" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00304" sboTerm="SBO:0000185" id="R_MAR00304" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -286993,7 +286997,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00304">
+            <rdf:Description rdf:about="#R_MAR00304">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_0304"/>
@@ -287005,10 +287009,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02457e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02457e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02457c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02457c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -287019,7 +287023,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00308" sboTerm="SBO:0000185" id="MAR00308" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00308" sboTerm="SBO:0000185" id="R_MAR00308" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -287027,7 +287031,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00308">
+            <rdf:Description rdf:about="#R_MAR00308">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_0308"/>
@@ -287039,10 +287043,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02053e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02053e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02053c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02053c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -287053,7 +287057,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00312" sboTerm="SBO:0000185" id="MAR00312" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00312" sboTerm="SBO:0000185" id="R_MAR00312" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -287061,7 +287065,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00312">
+            <rdf:Description rdf:about="#R_MAR00312">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/DOCOSACTDe"/>
@@ -287073,10 +287077,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01373e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01373e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01373c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01373c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -287087,7 +287091,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00318" sboTerm="SBO:0000185" id="MAR00318" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00318" sboTerm="SBO:0000185" id="R_MAR00318" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -287095,7 +287099,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00318">
+            <rdf:Description rdf:about="#R_MAR00318">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CE2512te"/>
@@ -287108,10 +287112,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01583e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01583e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01583c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01583c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -287122,7 +287126,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00322" sboTerm="SBO:0000185" id="MAR00322" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00322" sboTerm="SBO:0000185" id="R_MAR00322" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -287130,7 +287134,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00322">
+            <rdf:Description rdf:about="#R_MAR00322">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_0322"/>
@@ -287142,10 +287146,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01582e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01582e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01582c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01582c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -287156,7 +287160,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00326" sboTerm="SBO:0000185" id="MAR00326" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00326" sboTerm="SBO:0000185" id="R_MAR00326" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -287164,7 +287168,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00326">
+            <rdf:Description rdf:about="#R_MAR00326">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_0326"/>
@@ -287176,10 +287180,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03045e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03045e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03045c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03045c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -287190,7 +287194,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00330" sboTerm="SBO:0000185" id="MAR00330" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00330" sboTerm="SBO:0000185" id="R_MAR00330" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -287199,7 +287203,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00330">
+            <rdf:Description rdf:about="#R_MAR00330">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/LGNCt"/>
@@ -287213,10 +287217,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02385e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02385e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02385c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02385c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -287227,7 +287231,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00336" sboTerm="SBO:0000185" id="MAR00336" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00336" sboTerm="SBO:0000185" id="R_MAR00336" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -287235,7 +287239,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00336">
+            <rdf:Description rdf:about="#R_MAR00336">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/CE2513td"/>
@@ -287247,10 +287251,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02564e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02564e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02564c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02564c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -287261,7 +287265,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00340" sboTerm="SBO:0000185" id="MAR00340" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00340" sboTerm="SBO:0000185" id="R_MAR00340" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -287269,7 +287273,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00340">
+            <rdf:Description rdf:about="#R_MAR00340">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HEXCt"/>
@@ -287281,10 +287285,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01432e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01432e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01432c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01432c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -287295,7 +287299,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00344" sboTerm="SBO:0000185" id="MAR00344" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00344" sboTerm="SBO:0000185" id="R_MAR00344" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -287303,7 +287307,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00344">
+            <rdf:Description rdf:about="#R_MAR00344">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_0344"/>
@@ -287315,10 +287319,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03153e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03153e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03153c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03153c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -287329,7 +287333,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00348" sboTerm="SBO:0000185" id="MAR00348" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00348" sboTerm="SBO:0000185" id="R_MAR00348" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -287338,7 +287342,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00348">
+            <rdf:Description rdf:about="#R_MAR00348">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/LNLNCAt"/>
@@ -287352,10 +287356,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02389e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02389e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02389c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02389c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -287366,7 +287370,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00352" sboTerm="SBO:0000185" id="MAR00352" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00352" sboTerm="SBO:0000185" id="R_MAR00352" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -287374,7 +287378,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00352">
+            <rdf:Description rdf:about="#R_MAR00352">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/STRDNCt"/>
@@ -287386,10 +287390,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02939e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02939e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02939c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02939c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -287400,7 +287404,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00356" sboTerm="SBO:0000185" id="MAR00356" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00356" sboTerm="SBO:0000185" id="R_MAR00356" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -287408,7 +287412,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00356">
+            <rdf:Description rdf:about="#R_MAR00356">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/EICOSTETt"/>
@@ -287420,10 +287424,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02648e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02648e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02648c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02648c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -287434,7 +287438,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00360" sboTerm="SBO:0000185" id="MAR00360" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00360" sboTerm="SBO:0000185" id="R_MAR00360" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -287442,7 +287446,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00360">
+            <rdf:Description rdf:about="#R_MAR00360">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/TMNDNCt"/>
@@ -287454,10 +287458,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01784e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01784e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01784c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01784c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -287468,7 +287472,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00364" sboTerm="SBO:0000185" id="MAR00364" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00364" sboTerm="SBO:0000185" id="R_MAR00364" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -287476,7 +287480,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00364">
+            <rdf:Description rdf:about="#R_MAR00364">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CLPNDt"/>
@@ -287489,10 +287493,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01741e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01741e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01741c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01741c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -287503,7 +287507,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00368" sboTerm="SBO:0000185" id="MAR00368" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00368" sboTerm="SBO:0000185" id="R_MAR00368" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -287511,7 +287515,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00368">
+            <rdf:Description rdf:about="#R_MAR00368">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/TETPENT3t"/>
@@ -287523,10 +287527,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00135e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00135e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00135c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00135c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -287537,7 +287541,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00372" sboTerm="SBO:0000185" id="MAR00372" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00372" sboTerm="SBO:0000185" id="R_MAR00372" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -287545,7 +287549,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00372">
+            <rdf:Description rdf:about="#R_MAR00372">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/TETHEX3t"/>
@@ -287557,10 +287561,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00114e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00114e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00114c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00114c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -287571,7 +287575,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00376" sboTerm="SBO:0000185" id="MAR00376" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00376" sboTerm="SBO:0000185" id="R_MAR00376" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -287579,7 +287583,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00376">
+            <rdf:Description rdf:about="#R_MAR00376">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CRVNCtr"/>
@@ -287593,10 +287597,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01689e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01689e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01689c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01689c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -287607,7 +287611,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00380" sboTerm="SBO:0000185" id="MAR00380" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00380" sboTerm="SBO:0000185" id="R_MAR00380" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -287615,7 +287619,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00380">
+            <rdf:Description rdf:about="#R_MAR00380">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_0380"/>
@@ -287627,10 +287631,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00010e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00010e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00010c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00010c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -287641,7 +287645,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00384" sboTerm="SBO:0000185" id="MAR00384" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00384" sboTerm="SBO:0000185" id="R_MAR00384" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -287649,7 +287653,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00384">
+            <rdf:Description rdf:about="#R_MAR00384">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_0384"/>
@@ -287661,10 +287665,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00341e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00341e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00341c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00341c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -287675,7 +287679,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00388" sboTerm="SBO:0000185" id="MAR00388" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00388" sboTerm="SBO:0000185" id="R_MAR00388" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -287683,7 +287687,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00388">
+            <rdf:Description rdf:about="#R_MAR00388">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_0388"/>
@@ -287695,10 +287699,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00260e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00260e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00260c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00260c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -287709,7 +287713,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00392" sboTerm="SBO:0000185" id="MAR00392" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00392" sboTerm="SBO:0000185" id="R_MAR00392" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -287717,7 +287721,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00392">
+            <rdf:Description rdf:about="#R_MAR00392">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_0392"/>
@@ -287729,10 +287733,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00315e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00315e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00315c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00315c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -287743,7 +287747,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00396" sboTerm="SBO:0000185" id="MAR00396" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00396" sboTerm="SBO:0000185" id="R_MAR00396" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -287752,7 +287756,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00396">
+            <rdf:Description rdf:about="#R_MAR00396">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/LNLCt"/>
@@ -287766,10 +287770,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02387e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02387e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02387c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02387c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -287780,7 +287784,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00400" sboTerm="SBO:0000185" id="MAR00400" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00400" sboTerm="SBO:0000185" id="R_MAR00400" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -287789,7 +287793,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00400">
+            <rdf:Description rdf:about="#R_MAR00400">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/LNLNCGt"/>
@@ -287803,10 +287807,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01932e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01932e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01932c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01932c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -287817,7 +287821,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00404" sboTerm="SBO:0000185" id="MAR00404" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00404" sboTerm="SBO:0000185" id="R_MAR00404" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -287826,7 +287830,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00404">
+            <rdf:Description rdf:about="#R_MAR00404">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/DLNLCGt"/>
@@ -287839,10 +287843,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01696e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01696e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01696c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01696c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -287853,7 +287857,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00408" sboTerm="SBO:0000185" id="MAR00408" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00408" sboTerm="SBO:0000185" id="R_MAR00408" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -287862,7 +287866,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00408">
+            <rdf:Description rdf:about="#R_MAR00408">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ARACHDt2"/>
@@ -287876,10 +287880,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01362e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01362e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01362c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01362c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -287890,7 +287894,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00412" sboTerm="SBO:0000185" id="MAR00412" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00412" sboTerm="SBO:0000185" id="R_MAR00412" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -287898,7 +287902,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00412">
+            <rdf:Description rdf:about="#R_MAR00412">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ADRNt"/>
@@ -287911,10 +287915,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01291e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01291e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01291c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01291c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -287925,7 +287929,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00416" sboTerm="SBO:0000185" id="MAR00416" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00416" sboTerm="SBO:0000185" id="R_MAR00416" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -287933,7 +287937,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00416">
+            <rdf:Description rdf:about="#R_MAR00416">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/TETTET6t"/>
@@ -287945,10 +287949,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00132e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00132e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00132c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00132c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -287959,7 +287963,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00420" sboTerm="SBO:0000185" id="MAR00420" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00420" sboTerm="SBO:0000185" id="R_MAR00420" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -287967,7 +287971,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00420">
+            <rdf:Description rdf:about="#R_MAR00420">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/TETPENT6t"/>
@@ -287979,10 +287983,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00111e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00111e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00111c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00111c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -287993,7 +287997,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00424" sboTerm="SBO:0000185" id="MAR00424" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00424" sboTerm="SBO:0000185" id="R_MAR00424" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -288001,7 +288005,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00424">
+            <rdf:Description rdf:about="#R_MAR00424">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/DCSPTN1t"/>
@@ -288013,10 +288017,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00094e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00094e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00094c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00094c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -288027,7 +288031,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00428" sboTerm="SBO:0000185" id="MAR00428" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00428" sboTerm="SBO:0000185" id="R_MAR00428" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -288035,7 +288039,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00428">
+            <rdf:Description rdf:about="#R_MAR00428">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_0428"/>
@@ -288047,10 +288051,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00008e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00008e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00008c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00008c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -288061,7 +288065,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00432" sboTerm="SBO:0000185" id="MAR00432" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00432" sboTerm="SBO:0000185" id="R_MAR00432" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -288069,7 +288073,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00432">
+            <rdf:Description rdf:about="#R_MAR00432">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_0432"/>
@@ -288081,10 +288085,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00021e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00021e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00021c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00021c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -288095,7 +288099,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00436" sboTerm="SBO:0000185" id="MAR00436" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00436" sboTerm="SBO:0000185" id="R_MAR00436" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -288103,7 +288107,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00436">
+            <rdf:Description rdf:about="#R_MAR00436">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_0436"/>
@@ -288115,10 +288119,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00265e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00265e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00265c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00265c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -288129,7 +288133,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00440" sboTerm="SBO:0000185" id="MAR00440" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00440" sboTerm="SBO:0000185" id="R_MAR00440" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -288137,7 +288141,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#meta_MAR00440">
+            <rdf:Description rdf:about="#meta_R_MAR00440">
               <bqbiol:is>
                 <rdf:Bag/>
               </bqbiol:is>
@@ -288145,13 +288149,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02746e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02746e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02746c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02746c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR00444" sboTerm="SBO:0000185" id="MAR00444" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00444" sboTerm="SBO:0000185" id="R_MAR00444" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -288160,7 +288164,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00444">
+            <rdf:Description rdf:about="#R_MAR00444">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GLYCt"/>
@@ -288175,16 +288179,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01983c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01983c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01983e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01983e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Eglp1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00469" sboTerm="SBO:0000185" id="MAR00469" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00469" sboTerm="SBO:0000185" id="R_MAR00469" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -288193,7 +288197,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00469">
+            <rdf:Description rdf:about="#R_MAR00469">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_0469"/>
@@ -288204,18 +288208,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02685c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02685c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02685e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02685e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR00470" sboTerm="SBO:0000185" id="MAR00470" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00470" sboTerm="SBO:0000185" id="R_MAR00470" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -288224,7 +288228,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00470">
+            <rdf:Description rdf:about="#R_MAR00470">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PCt"/>
@@ -288237,21 +288241,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01395c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01395c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01395e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01395e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Mdr50"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00476" sboTerm="SBO:0000185" id="MAR00476" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00476" sboTerm="SBO:0000185" id="R_MAR00476" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -288260,7 +288264,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00476">
+            <rdf:Description rdf:about="#R_MAR00476">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PCt"/>
@@ -288273,21 +288277,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02684c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02684c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02684e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02684e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Mdr50"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00770" sboTerm="SBO:0000185" id="MAR00770" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00770" sboTerm="SBO:0000185" id="R_MAR00770" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -288295,7 +288299,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00770">
+            <rdf:Description rdf:about="#R_MAR00770">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_0770"/>
@@ -288305,16 +288309,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01972c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01972c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01972e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01972e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG6299"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00782" sboTerm="SBO:0000185" id="MAR00782" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00782" sboTerm="SBO:0000185" id="R_MAR00782" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -288322,7 +288326,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00782">
+            <rdf:Description rdf:about="#R_MAR00782">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GLB1"/>
@@ -288334,13 +288338,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02930c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02930c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02930e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02930e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01082" sboTerm="SBO:0000185" id="MAR01082" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01082" sboTerm="SBO:0000185" id="R_MAR01082" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -288349,7 +288353,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01082">
+            <rdf:Description rdf:about="#R_MAR01082">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106233"/>
@@ -288362,16 +288366,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02366c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02366c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02366e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02366e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="MRP"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01086" sboTerm="SBO:0000185" id="MAR01086" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01086" sboTerm="SBO:0000185" id="R_MAR01086" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -288380,7 +288384,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01086">
+            <rdf:Description rdf:about="#R_MAR01086">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/LEUKTRE4t"/>
@@ -288390,10 +288394,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02369c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02369c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02369e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02369e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -288413,7 +288417,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01898" sboTerm="SBO:0000185" id="MAR01898" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01898" sboTerm="SBO:0000185" id="R_MAR01898" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -288422,7 +288426,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01898">
+            <rdf:Description rdf:about="#R_MAR01898">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106300"/>
@@ -288434,14 +288438,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01980c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02617e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01980c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02617e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01980e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02617c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01980e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02617c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -288454,7 +288458,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01899" sboTerm="SBO:0000185" id="MAR01899" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01899" sboTerm="SBO:0000185" id="R_MAR01899" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -288463,7 +288467,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01899">
+            <rdf:Description rdf:about="#R_MAR01899">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106301"/>
@@ -288475,14 +288479,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02617e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02900c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02617e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02900c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02617c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02900e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02617c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02900e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -288495,7 +288499,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01900" sboTerm="SBO:0000185" id="MAR01900" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01900" sboTerm="SBO:0000185" id="R_MAR01900" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -288504,7 +288508,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01900">
+            <rdf:Description rdf:about="#R_MAR01900">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106302"/>
@@ -288516,14 +288520,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02617e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02901c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02617e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02901c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02617c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02901e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02617c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02901e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -288536,7 +288540,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01901" sboTerm="SBO:0000185" id="MAR01901" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01901" sboTerm="SBO:0000185" id="R_MAR01901" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -288545,7 +288549,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01901">
+            <rdf:Description rdf:about="#R_MAR01901">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106303"/>
@@ -288557,14 +288561,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01980c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02897e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01980c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02897e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01980e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02897c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01980e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02897c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -288577,7 +288581,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01902" sboTerm="SBO:0000185" id="MAR01902" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01902" sboTerm="SBO:0000185" id="R_MAR01902" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -288586,7 +288590,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01902">
+            <rdf:Description rdf:about="#R_MAR01902">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106304"/>
@@ -288598,14 +288602,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02897e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02900c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02897e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02900c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02897c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02900e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02897c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02900e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -288618,7 +288622,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01903" sboTerm="SBO:0000185" id="MAR01903" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01903" sboTerm="SBO:0000185" id="R_MAR01903" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -288627,7 +288631,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01903">
+            <rdf:Description rdf:about="#R_MAR01903">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106305"/>
@@ -288639,14 +288643,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02897e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02901c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02897e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02901c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02897c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02901e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02897c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02901e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -288659,7 +288663,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01904" sboTerm="SBO:0000185" id="MAR01904" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01904" sboTerm="SBO:0000185" id="R_MAR01904" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -288668,7 +288672,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01904">
+            <rdf:Description rdf:about="#R_MAR01904">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106306"/>
@@ -288680,14 +288684,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01260e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01980c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01260e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01980c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01260c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01980e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01260c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01980e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -288700,7 +288704,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01905" sboTerm="SBO:0000185" id="MAR01905" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01905" sboTerm="SBO:0000185" id="R_MAR01905" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -288709,7 +288713,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01905">
+            <rdf:Description rdf:about="#R_MAR01905">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106307"/>
@@ -288721,14 +288725,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01260e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02900c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01260e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02900c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01260c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02900e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01260c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02900e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -288741,7 +288745,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01906" sboTerm="SBO:0000185" id="MAR01906" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01906" sboTerm="SBO:0000185" id="R_MAR01906" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -288750,7 +288754,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01906">
+            <rdf:Description rdf:about="#R_MAR01906">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106308"/>
@@ -288762,14 +288766,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01260e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02901c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01260e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02901c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01260c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02901e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01260c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02901e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -288782,7 +288786,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01907" sboTerm="SBO:0000185" id="MAR01907" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01907" sboTerm="SBO:0000185" id="R_MAR01907" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -288791,7 +288795,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01907">
+            <rdf:Description rdf:about="#R_MAR01907">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106309"/>
@@ -288803,14 +288807,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01736e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01980c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01736e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01980c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01736c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01980e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01736c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01980e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -288823,7 +288827,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01908" sboTerm="SBO:0000185" id="MAR01908" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01908" sboTerm="SBO:0000185" id="R_MAR01908" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -288832,7 +288836,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01908">
+            <rdf:Description rdf:about="#R_MAR01908">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106310"/>
@@ -288844,14 +288848,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01736e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02900c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01736e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02900c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01736c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02900e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01736c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02900e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -288864,7 +288868,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01909" sboTerm="SBO:0000185" id="MAR01909" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01909" sboTerm="SBO:0000185" id="R_MAR01909" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -288873,7 +288877,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01909">
+            <rdf:Description rdf:about="#R_MAR01909">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106311"/>
@@ -288885,14 +288889,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01736e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02901c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01736e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02901c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01736c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02901e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01736c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02901e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -288905,7 +288909,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01910" sboTerm="SBO:0000185" id="MAR01910" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01910" sboTerm="SBO:0000185" id="R_MAR01910" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -288914,7 +288918,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01910">
+            <rdf:Description rdf:about="#R_MAR01910">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR96713"/>
@@ -288926,18 +288930,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01450r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01450c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01911" sboTerm="SBO:0000185" id="MAR01911" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01911" sboTerm="SBO:0000185" id="R_MAR01911" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 2</p>
@@ -288946,7 +288950,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01911">
+            <rdf:Description rdf:about="#R_MAR01911">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CHSTEROLt"/>
@@ -288962,15 +288966,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01450c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01450e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -288982,7 +288986,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01913" sboTerm="SBO:0000185" id="MAR01913" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01913" sboTerm="SBO:0000185" id="R_MAR01913" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -288991,7 +288995,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01913">
+            <rdf:Description rdf:about="#R_MAR01913">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105437"/>
@@ -289001,18 +289005,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02946c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02946c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02946e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02946e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01914" sboTerm="SBO:0000185" id="MAR01914" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01914" sboTerm="SBO:0000185" id="R_MAR01914" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -289021,7 +289025,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01914">
+            <rdf:Description rdf:about="#R_MAR01914">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/r2439"/>
@@ -289032,12 +289036,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02946e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02946e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02946c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02946c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -289047,7 +289051,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01919" sboTerm="SBO:0000176" id="MAR01919" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01919" sboTerm="SBO:0000176" id="R_MAR01919" name="3&apos;-phosphoadenylyl-sulfate:cholesterol sulfotransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 2</p>
@@ -289055,7 +289059,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01919">
+            <rdf:Description rdf:about="#R_MAR01919">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.8.2.2"/>
@@ -289068,19 +289072,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01450c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02682c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02682c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01512c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02681c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01512c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02681c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="St2"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02013" sboTerm="SBO:0000185" id="MAR02013" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02013" sboTerm="SBO:0000185" id="R_MAR02013" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -289088,7 +289092,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02013">
+            <rdf:Description rdf:about="#R_MAR02013">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/ALDSTRNte"/>
@@ -289098,13 +289102,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01309c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01309c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01309e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01309e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03858" sboTerm="SBO:0000185" id="MAR03858" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03858" sboTerm="SBO:0000185" id="R_MAR03858" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -289112,7 +289116,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03858">
+            <rdf:Description rdf:about="#R_MAR03858">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/D_LACt2"/>
@@ -289123,12 +289127,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01716e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01716e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01716c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01716c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -289138,7 +289142,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03951" sboTerm="SBO:0000185" id="MAR03951" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03951" sboTerm="SBO:0000185" id="R_MAR03951" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -289146,7 +289150,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03951">
+            <rdf:Description rdf:about="#R_MAR03951">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/HMR_3951"/>
@@ -289157,15 +289161,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02949c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02949c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02949e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02949e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03959" sboTerm="SBO:0000185" id="MAR03959" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03959" sboTerm="SBO:0000185" id="R_MAR03959" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -289173,7 +289177,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03959">
+            <rdf:Description rdf:about="#R_MAR03959">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/O2St"/>
@@ -289185,13 +289189,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02631c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02631c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02631e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02631e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03964" sboTerm="SBO:0000176" id="MAR03964" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03964" sboTerm="SBO:0000176" id="R_MAR03964" name="ATP phosphohydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -289199,7 +289203,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03964">
+            <rdf:Description rdf:about="#R_MAR03964">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ATPM"/>
@@ -289213,16 +289217,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR04062" sboTerm="SBO:0000185" id="MAR04062" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04062" sboTerm="SBO:0000185" id="R_MAR04062" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -289231,7 +289235,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04062">
+            <rdf:Description rdf:about="#R_MAR04062">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PYDXtr"/>
@@ -289245,13 +289249,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02813c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02813c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02813e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02813e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR04063" sboTerm="SBO:0000185" id="MAR04063" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04063" sboTerm="SBO:0000185" id="R_MAR04063" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -289260,7 +289264,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04063">
+            <rdf:Description rdf:about="#R_MAR04063">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR103359"/>
@@ -289271,13 +289275,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02814c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02814c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02814e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02814e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR04249" sboTerm="SBO:0000185" id="MAR04249" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04249" sboTerm="SBO:0000185" id="R_MAR04249" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -289286,7 +289290,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04249">
+            <rdf:Description rdf:about="#R_MAR04249">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105432"/>
@@ -289297,13 +289301,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03151c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03151c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03151e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03151e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR04321" sboTerm="SBO:0000185" id="MAR04321" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04321" sboTerm="SBO:0000185" id="R_MAR04321" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -289312,7 +289316,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04321">
+            <rdf:Description rdf:about="#R_MAR04321">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FRUt1r"/>
@@ -289324,10 +289328,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01840c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01840c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01840e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01840e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -289337,7 +289341,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04432" sboTerm="SBO:0000185" id="MAR04432" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04432" sboTerm="SBO:0000185" id="R_MAR04432" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -289345,7 +289349,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04432">
+            <rdf:Description rdf:about="#R_MAR04432">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/3MLDAt"/>
@@ -289357,13 +289361,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02477c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02477c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02477e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02477e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR04433" sboTerm="SBO:0000185" id="MAR04433" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04433" sboTerm="SBO:0000185" id="R_MAR04433" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -289372,7 +289376,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04433">
+            <rdf:Description rdf:about="#R_MAR04433">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106297"/>
@@ -289384,14 +289388,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01980c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02124e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01980c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02124e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01980e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02124c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01980e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02124c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -289403,7 +289407,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04434" sboTerm="SBO:0000185" id="MAR04434" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04434" sboTerm="SBO:0000185" id="R_MAR04434" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -289412,7 +289416,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04434">
+            <rdf:Description rdf:about="#R_MAR04434">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106298"/>
@@ -289424,14 +289428,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02124e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02900c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02124e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02900c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02124c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02900e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02124c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02900e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -289443,7 +289447,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04435" sboTerm="SBO:0000185" id="MAR04435" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04435" sboTerm="SBO:0000185" id="R_MAR04435" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -289452,7 +289456,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04435">
+            <rdf:Description rdf:about="#R_MAR04435">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106299"/>
@@ -289464,14 +289468,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02124e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02901c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02124e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02901c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02124c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02901e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02124c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02901e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -289483,7 +289487,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04436" sboTerm="SBO:0000185" id="MAR04436" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04436" sboTerm="SBO:0000185" id="R_MAR04436" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -289492,7 +289496,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04436">
+            <rdf:Description rdf:about="#R_MAR04436">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106205"/>
@@ -289504,14 +289508,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02026c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02124e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02124e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02026e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02124c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02124c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -289523,7 +289527,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04691" sboTerm="SBO:0000185" id="MAR04691" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04691" sboTerm="SBO:0000185" id="R_MAR04691" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -289531,7 +289535,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04691">
+            <rdf:Description rdf:about="#R_MAR04691">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ABUTt4_2_r"/>
@@ -289542,18 +289546,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00970e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM00970e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="2" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00970c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM00970c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="2" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Gat"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04721" sboTerm="SBO:0000185" id="MAR04721" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04721" sboTerm="SBO:0000185" id="R_MAR04721" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -289562,7 +289566,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04721">
+            <rdf:Description rdf:about="#R_MAR04721">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PNTOt4"/>
@@ -289574,12 +289578,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02680e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02680e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02680c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02680c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -289588,7 +289592,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04844" sboTerm="SBO:0000185" id="MAR04844" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04844" sboTerm="SBO:0000185" id="R_MAR04844" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -289597,7 +289601,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04844">
+            <rdf:Description rdf:about="#R_MAR04844">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.85"/>
@@ -289609,18 +289613,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01280c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02170e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01280c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02170e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01280e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02170c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01280e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02170c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="FASN1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04845" sboTerm="SBO:0000185" id="MAR04845" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04845" sboTerm="SBO:0000185" id="R_MAR04845" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -289629,7 +289633,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04845">
+            <rdf:Description rdf:about="#R_MAR04845">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ADNt4"/>
@@ -289644,12 +289648,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01280e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01280e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01280c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01280c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -289658,7 +289662,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04847" sboTerm="SBO:0000185" id="MAR04847" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04847" sboTerm="SBO:0000185" id="R_MAR04847" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -289667,7 +289671,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04847">
+            <rdf:Description rdf:about="#R_MAR04847">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ADEt"/>
@@ -289680,16 +289684,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01279c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01279c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01279e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01279e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Ent1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04848" sboTerm="SBO:0000185" id="MAR04848" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04848" sboTerm="SBO:0000185" id="R_MAR04848" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -289698,7 +289702,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04848">
+            <rdf:Description rdf:about="#R_MAR04848">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/HYXNt"/>
@@ -289711,16 +289715,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02159c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02159c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02159e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02159e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Ent1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04849" sboTerm="SBO:0000185" id="MAR04849" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04849" sboTerm="SBO:0000185" id="R_MAR04849" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -289729,7 +289733,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04849">
+            <rdf:Description rdf:about="#R_MAR04849">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR96735"/>
@@ -289742,16 +289746,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01588c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01588c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01588e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01588e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="slif"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04858" sboTerm="SBO:0000185" id="MAR04858" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04858" sboTerm="SBO:0000185" id="R_MAR04858" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -289760,7 +289764,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04858">
+            <rdf:Description rdf:about="#R_MAR04858">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GALt1r"/>
@@ -289772,13 +289776,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01910c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01910c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01910e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01910e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR04873" sboTerm="SBO:0000185" id="MAR04873" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04873" sboTerm="SBO:0000185" id="R_MAR04873" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -289787,7 +289791,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04873">
+            <rdf:Description rdf:about="#R_MAR04873">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/NH4t3r"/>
@@ -289798,16 +289802,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02578c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02578c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02578e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02578e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Rh50"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04875" sboTerm="SBO:0000185" id="MAR04875" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04875" sboTerm="SBO:0000185" id="R_MAR04875" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -289816,7 +289820,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04875">
+            <rdf:Description rdf:about="#R_MAR04875">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR102230"/>
@@ -289827,13 +289831,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02659c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02659c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02659e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02659e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR04882" sboTerm="SBO:0000185" id="MAR04882" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04882" sboTerm="SBO:0000185" id="R_MAR04882" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -289842,7 +289846,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04882">
+            <rdf:Description rdf:about="#R_MAR04882">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/URAt"/>
@@ -289857,16 +289861,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03118c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03118c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03118e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03118e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Ent1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04885" sboTerm="SBO:0000185" id="MAR04885" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04885" sboTerm="SBO:0000185" id="R_MAR04885" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -289875,7 +289879,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04885">
+            <rdf:Description rdf:about="#R_MAR04885">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/H2Ot"/>
@@ -289889,10 +289893,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -289904,7 +289908,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04896" sboTerm="SBO:0000185" id="MAR04896" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04896" sboTerm="SBO:0000185" id="R_MAR04896" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -289912,7 +289916,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04896">
+            <rdf:Description rdf:about="#R_MAR04896">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/O2t"/>
@@ -289924,13 +289928,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02630e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR04911" sboTerm="SBO:0000185" id="MAR04911" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04912" sboTerm="SBO:0000185" id="R_MAR04912" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -289938,110 +289942,251 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04911">
+            <rdf:Description rdf:about="#R_MAR04912">
               <bqbiol:is>
                 <rdf:Bag>
-                  <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PIt8"/>
-                  <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR102875"/>
+                  <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PIt9"/>
+                  <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR102876"/>
+                  <rdf:li rdf:resource="https://identifiers.org/vmhreaction/PIt9"/>
                 </rdf:Bag>
               </bqbiol:is>
             </rdf:Description>
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02519e" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM02751e" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02751e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02519c" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR04912" sboTerm="SBO:0000185" id="MAR04912" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04919" sboTerm="SBO:0000185" id="R_MAR04919" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
+            <p>AUTHORS: PMID:3888072;PMID:911815</p>
           </body>
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04912">
+            <rdf:Description rdf:about="#R_MAR04919">
               <bqbiol:is>
                 <rdf:Bag>
-                  <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PIt9"/>
-                  <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR102876"/>
-                  <rdf:li rdf:resource="https://identifiers.org/vmhreaction/PIt9"/>
+                  <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CO2t"/>
+                  <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR96810"/>
+                  <rdf:li rdf:resource="https://identifiers.org/vmhreaction/CO2t"/>
                 </rdf:Bag>
               </bqbiol:is>
             </rdf:Description>
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02519e" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02751e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01596c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02519c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01596e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR04919" sboTerm="SBO:0000185" id="MAR04919" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04928" sboTerm="SBO:0000185" id="R_MAR04928" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
-            <p>AUTHORS: PMID:3888072;PMID:911815</p>
+            <p>AUTHORS: PMID:12739169;PMID:18305372</p>
           </body>
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04919">
+            <rdf:Description rdf:about="#R_MAR04928">
               <bqbiol:is>
                 <rdf:Bag>
-                  <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CO2t"/>
-                  <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR96810"/>
-                  <rdf:li rdf:resource="https://identifiers.org/vmhreaction/CO2t"/>
+                  <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PYRt2"/>
+                  <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR103385"/>
+                  <rdf:li rdf:resource="https://identifiers.org/vmhreaction/PYRt2r"/>
+                  <rdf:li rdf:resource="https://identifiers.org/rhea/64721"/>
+                  <rdf:li rdf:resource="https://identifiers.org/rhea/64720"/>
+                  <rdf:li rdf:resource="https://identifiers.org/tcdb/2.A.1.13.1"/>
                 </rdf:Bag>
               </bqbiol:is>
             </rdf:Description>
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01596c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02819e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01596e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02819c" stoichiometry="1" constant="true"/>
         </listOfProducts>
+        <fbc:geneProductAssociation>
+          <fbc:or>
+            <fbc:geneProductRef fbc:geneProduct="CG13907"/>
+            <fbc:geneProductRef fbc:geneProduct="chk"/>
+            <fbc:geneProductRef fbc:geneProduct="hrm"/>
+          </fbc:or>
+        </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04928" sboTerm="SBO:0000185" id="MAR04928" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04931" sboTerm="SBO:0000185" id="R_MAR04931" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
-            <p>AUTHORS: PMID:12739169;PMID:18305372</p>
+            <p>AUTHORS: PMID:14770309;PMID:14770310</p>
           </body>
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04928">
+            <rdf:Description rdf:about="#R_MAR04931">
               <bqbiol:is>
                 <rdf:Bag>
-                  <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PYRt2"/>
-                  <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR103385"/>
-                  <rdf:li rdf:resource="https://identifiers.org/vmhreaction/PYRt2r"/>
-                  <rdf:li rdf:resource="https://identifiers.org/rhea/64721"/>
-                  <rdf:li rdf:resource="https://identifiers.org/rhea/64720"/>
+                  <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CYSTGLUex"/>
+                  <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR97013"/>
+                  <rdf:li rdf:resource="https://identifiers.org/vmhreaction/CYSTGLUex"/>
+                  <rdf:li rdf:resource="https://identifiers.org/tcdb/2.A.3.8.5"/>
+                </rdf:Bag>
+              </bqbiol:is>
+            </rdf:Description>
+          </rdf:RDF>
+        </annotation>
+        <listOfReactants>
+          <speciesReference species="M_MAM01629e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01974c" stoichiometry="1" constant="true"/>
+        </listOfReactants>
+        <listOfProducts>
+          <speciesReference species="M_MAM01629c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01974e" stoichiometry="1" constant="true"/>
+        </listOfProducts>
+      </reaction>
+      <reaction metaid="R_MAR04932" sboTerm="SBO:0000185" id="R_MAR04932" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+        <notes>
+          <body xmlns="http://www.w3.org/1999/xhtml">
+            <p>Confidence Level: 0</p>
+            <p>AUTHORS: PMID:14530974</p>
+          </body>
+        </notes>
+        <annotation>
+          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+            <rdf:Description rdf:about="#R_MAR04932">
+              <bqbiol:is>
+                <rdf:Bag>
+                  <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GLUt6"/>
+                  <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR100302"/>
+                  <rdf:li rdf:resource="https://identifiers.org/vmhreaction/GLUt6"/>
+                </rdf:Bag>
+              </bqbiol:is>
+            </rdf:Description>
+          </rdf:RDF>
+        </annotation>
+        <listOfReactants>
+          <speciesReference species="M_MAM01974e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02200c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="3" constant="true"/>
+        </listOfReactants>
+        <listOfProducts>
+          <speciesReference species="M_MAM01974c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02200e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="3" constant="true"/>
+        </listOfProducts>
+        <fbc:geneProductAssociation>
+          <fbc:or>
+            <fbc:geneProductRef fbc:geneProduct="Eaat1"/>
+            <fbc:geneProductRef fbc:geneProduct="Eaat2"/>
+          </fbc:or>
+        </fbc:geneProductAssociation>
+      </reaction>
+      <reaction metaid="R_MAR04933" sboTerm="SBO:0000185" id="R_MAR04933" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+        <notes>
+          <body xmlns="http://www.w3.org/1999/xhtml">
+            <p>Confidence Level: 0</p>
+            <p>AUTHORS: PMID:11287335;PMID:11327718</p>
+          </body>
+        </notes>
+        <annotation>
+          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+            <rdf:Description rdf:about="#R_MAR04933">
+              <bqbiol:is>
+                <rdf:Bag>
+                  <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR95660"/>
+                  <rdf:li rdf:resource="https://identifiers.org/vmhreaction/r0879"/>
+                  <rdf:li rdf:resource="https://identifiers.org/tcdb/2.A.29.2.4"/>
+                  <rdf:li rdf:resource="https://identifiers.org/tcdb/2.A.29.16.1"/>
+                </rdf:Bag>
+              </bqbiol:is>
+            </rdf:Description>
+          </rdf:RDF>
+        </annotation>
+        <listOfReactants>
+          <speciesReference species="M_MAM01306e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+        </listOfReactants>
+        <listOfProducts>
+          <speciesReference species="M_MAM01306c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+        </listOfProducts>
+        <fbc:geneProductAssociation>
+          <fbc:geneProductRef fbc:geneProduct="Tpc1"/>
+        </fbc:geneProductAssociation>
+      </reaction>
+      <reaction metaid="R_MAR04934" sboTerm="SBO:0000185" id="R_MAR04934" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+        <notes>
+          <body xmlns="http://www.w3.org/1999/xhtml">
+            <p>Confidence Level: 0</p>
+            <p>AUTHORS: PMID:12107270;PMID:12739169;PMID:12829793;PMID:17245649;PMID:18375207;PMID:8476015;PMID:8557697;PMID:9786900</p>
+          </body>
+        </notes>
+        <annotation>
+          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+            <rdf:Description rdf:about="#R_MAR04934">
+              <bqbiol:is>
+                <rdf:Bag>
+                  <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR95430"/>
+                  <rdf:li rdf:resource="https://identifiers.org/vmhreaction/r0881"/>
+                </rdf:Bag>
+              </bqbiol:is>
+            </rdf:Description>
+          </rdf:RDF>
+        </annotation>
+        <listOfReactants>
+          <speciesReference species="M_MAM01252e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+        </listOfReactants>
+        <listOfProducts>
+          <speciesReference species="M_MAM01252c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+        </listOfProducts>
+      </reaction>
+      <reaction metaid="R_MAR04935" sboTerm="SBO:0000185" id="R_MAR04935" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+        <notes>
+          <body xmlns="http://www.w3.org/1999/xhtml">
+            <p>Confidence Level: 0</p>
+            <p>AUTHORS: PMID:12107270;PMID:12739169;PMID:12829793;PMID:17173541;PMID:17245649;PMID:18305372;PMID:18375207;PMID:8476015;PMID:8557697;PMID:9651205;PMID:9786900</p>
+          </body>
+        </notes>
+        <annotation>
+          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+            <rdf:Description rdf:about="#R_MAR04935">
+              <bqbiol:is>
+                <rdf:Bag>
+                  <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ACt2r"/>
+                  <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR95429"/>
+                  <rdf:li rdf:resource="https://identifiers.org/vmhreaction/ACt2r"/>
                   <rdf:li rdf:resource="https://identifiers.org/tcdb/2.A.1.13.1"/>
+                  <rdf:li rdf:resource="https://identifiers.org/tcdb/2.A.1.13.5"/>
                 </rdf:Bag>
               </bqbiol:is>
             </rdf:Description>
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02819e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01252e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02819c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01252c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -290051,175 +290196,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04931" sboTerm="SBO:0000185" id="MAR04931" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
-        <notes>
-          <body xmlns="http://www.w3.org/1999/xhtml">
-            <p>Confidence Level: 0</p>
-            <p>AUTHORS: PMID:14770309;PMID:14770310</p>
-          </body>
-        </notes>
-        <annotation>
-          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04931">
-              <bqbiol:is>
-                <rdf:Bag>
-                  <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CYSTGLUex"/>
-                  <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR97013"/>
-                  <rdf:li rdf:resource="https://identifiers.org/vmhreaction/CYSTGLUex"/>
-                  <rdf:li rdf:resource="https://identifiers.org/tcdb/2.A.3.8.5"/>
-                </rdf:Bag>
-              </bqbiol:is>
-            </rdf:Description>
-          </rdf:RDF>
-        </annotation>
-        <listOfReactants>
-          <speciesReference species="MAM01629e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01974c" stoichiometry="1" constant="true"/>
-        </listOfReactants>
-        <listOfProducts>
-          <speciesReference species="MAM01629c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01974e" stoichiometry="1" constant="true"/>
-        </listOfProducts>
-      </reaction>
-      <reaction metaid="MAR04932" sboTerm="SBO:0000185" id="MAR04932" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
-        <notes>
-          <body xmlns="http://www.w3.org/1999/xhtml">
-            <p>Confidence Level: 0</p>
-            <p>AUTHORS: PMID:14530974</p>
-          </body>
-        </notes>
-        <annotation>
-          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04932">
-              <bqbiol:is>
-                <rdf:Bag>
-                  <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GLUt6"/>
-                  <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR100302"/>
-                  <rdf:li rdf:resource="https://identifiers.org/vmhreaction/GLUt6"/>
-                </rdf:Bag>
-              </bqbiol:is>
-            </rdf:Description>
-          </rdf:RDF>
-        </annotation>
-        <listOfReactants>
-          <speciesReference species="MAM01974e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02200c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="3" constant="true"/>
-        </listOfReactants>
-        <listOfProducts>
-          <speciesReference species="MAM01974c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02200e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="3" constant="true"/>
-        </listOfProducts>
-        <fbc:geneProductAssociation>
-          <fbc:or>
-            <fbc:geneProductRef fbc:geneProduct="Eaat1"/>
-            <fbc:geneProductRef fbc:geneProduct="Eaat2"/>
-          </fbc:or>
-        </fbc:geneProductAssociation>
-      </reaction>
-      <reaction metaid="MAR04933" sboTerm="SBO:0000185" id="MAR04933" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
-        <notes>
-          <body xmlns="http://www.w3.org/1999/xhtml">
-            <p>Confidence Level: 0</p>
-            <p>AUTHORS: PMID:11287335;PMID:11327718</p>
-          </body>
-        </notes>
-        <annotation>
-          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04933">
-              <bqbiol:is>
-                <rdf:Bag>
-                  <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR95660"/>
-                  <rdf:li rdf:resource="https://identifiers.org/vmhreaction/r0879"/>
-                  <rdf:li rdf:resource="https://identifiers.org/tcdb/2.A.29.2.4"/>
-                  <rdf:li rdf:resource="https://identifiers.org/tcdb/2.A.29.16.1"/>
-                </rdf:Bag>
-              </bqbiol:is>
-            </rdf:Description>
-          </rdf:RDF>
-        </annotation>
-        <listOfReactants>
-          <speciesReference species="MAM01306e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-        </listOfReactants>
-        <listOfProducts>
-          <speciesReference species="MAM01306c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-        </listOfProducts>
-        <fbc:geneProductAssociation>
-          <fbc:geneProductRef fbc:geneProduct="Tpc1"/>
-        </fbc:geneProductAssociation>
-      </reaction>
-      <reaction metaid="MAR04934" sboTerm="SBO:0000185" id="MAR04934" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
-        <notes>
-          <body xmlns="http://www.w3.org/1999/xhtml">
-            <p>Confidence Level: 0</p>
-            <p>AUTHORS: PMID:12107270;PMID:12739169;PMID:12829793;PMID:17245649;PMID:18375207;PMID:8476015;PMID:8557697;PMID:9786900</p>
-          </body>
-        </notes>
-        <annotation>
-          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04934">
-              <bqbiol:is>
-                <rdf:Bag>
-                  <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR95430"/>
-                  <rdf:li rdf:resource="https://identifiers.org/vmhreaction/r0881"/>
-                </rdf:Bag>
-              </bqbiol:is>
-            </rdf:Description>
-          </rdf:RDF>
-        </annotation>
-        <listOfReactants>
-          <speciesReference species="MAM01252e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-        </listOfReactants>
-        <listOfProducts>
-          <speciesReference species="MAM01252c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-        </listOfProducts>
-      </reaction>
-      <reaction metaid="MAR04935" sboTerm="SBO:0000185" id="MAR04935" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
-        <notes>
-          <body xmlns="http://www.w3.org/1999/xhtml">
-            <p>Confidence Level: 0</p>
-            <p>AUTHORS: PMID:12107270;PMID:12739169;PMID:12829793;PMID:17173541;PMID:17245649;PMID:18305372;PMID:18375207;PMID:8476015;PMID:8557697;PMID:9651205;PMID:9786900</p>
-          </body>
-        </notes>
-        <annotation>
-          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04935">
-              <bqbiol:is>
-                <rdf:Bag>
-                  <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ACt2r"/>
-                  <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR95429"/>
-                  <rdf:li rdf:resource="https://identifiers.org/vmhreaction/ACt2r"/>
-                  <rdf:li rdf:resource="https://identifiers.org/tcdb/2.A.1.13.1"/>
-                  <rdf:li rdf:resource="https://identifiers.org/tcdb/2.A.1.13.5"/>
-                </rdf:Bag>
-              </bqbiol:is>
-            </rdf:Description>
-          </rdf:RDF>
-        </annotation>
-        <listOfReactants>
-          <speciesReference species="MAM01252e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-        </listOfReactants>
-        <listOfProducts>
-          <speciesReference species="MAM01252c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-        </listOfProducts>
-        <fbc:geneProductAssociation>
-          <fbc:or>
-            <fbc:geneProductRef fbc:geneProduct="CG13907"/>
-            <fbc:geneProductRef fbc:geneProduct="chk"/>
-            <fbc:geneProductRef fbc:geneProduct="hrm"/>
-          </fbc:or>
-        </fbc:geneProductAssociation>
-      </reaction>
-      <reaction metaid="MAR04938" sboTerm="SBO:0000185" id="MAR04938" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04938" sboTerm="SBO:0000185" id="R_MAR04938" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -290228,7 +290205,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04938">
+            <rdf:Description rdf:about="#R_MAR04938">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/SUCCt4_3"/>
@@ -290242,18 +290219,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02519e" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM02943e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM02943e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02519c" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM02943c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM02943c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Indy"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04939" sboTerm="SBO:0000185" id="MAR04939" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04939" sboTerm="SBO:0000185" id="R_MAR04939" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -290261,7 +290238,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04939">
+            <rdf:Description rdf:about="#R_MAR04939">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/SUCCt4_2"/>
@@ -290273,18 +290250,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02519e" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02943e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02943e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02519c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02943c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02943c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Indy"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04946" sboTerm="SBO:0000185" id="MAR04946" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04946" sboTerm="SBO:0000185" id="R_MAR04946" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -290293,7 +290270,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04946">
+            <rdf:Description rdf:about="#R_MAR04946">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/SO4HCOtex"/>
@@ -290305,12 +290282,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02046c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02946e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02946e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02046e" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02946c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02946c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -290320,7 +290297,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04947" sboTerm="SBO:0000185" id="MAR04947" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04947" sboTerm="SBO:0000185" id="R_MAR04947" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -290329,7 +290306,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04947">
+            <rdf:Description rdf:about="#R_MAR04947">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105176"/>
@@ -290340,13 +290317,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03130c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03130c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03130e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03130e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR04948" sboTerm="SBO:0000185" id="MAR04948" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04948" sboTerm="SBO:0000185" id="R_MAR04948" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -290354,7 +290331,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04948">
+            <rdf:Description rdf:about="#R_MAR04948">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ACALDt"/>
@@ -290366,13 +290343,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01249c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01249c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01249e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01249e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR04949" sboTerm="SBO:0000185" id="MAR04949" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04949" sboTerm="SBO:0000185" id="R_MAR04949" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -290381,7 +290358,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04949">
+            <rdf:Description rdf:about="#R_MAR04949">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/UREAt"/>
@@ -290396,10 +290373,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03121c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03121c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03121e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03121e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -290408,7 +290385,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04952" sboTerm="SBO:0000185" id="MAR04952" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04952" sboTerm="SBO:0000185" id="R_MAR04952" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -290417,7 +290394,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04952">
+            <rdf:Description rdf:about="#R_MAR04952">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR95682"/>
@@ -290428,13 +290405,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01383e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01383e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01383c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01383c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR04954" sboTerm="SBO:0000185" id="MAR04954" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04954" sboTerm="SBO:0000185" id="R_MAR04954" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -290443,7 +290420,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04954">
+            <rdf:Description rdf:about="#R_MAR04954">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CHOLtu"/>
@@ -290458,10 +290435,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01513c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01513c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01513e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01513e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -290472,7 +290449,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04956" sboTerm="SBO:0000185" id="MAR04956" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04956" sboTerm="SBO:0000185" id="R_MAR04956" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -290481,7 +290458,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04956">
+            <rdf:Description rdf:about="#R_MAR04956">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/NKCCt"/>
@@ -290494,20 +290471,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01442e" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02200e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01442e" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02200e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01442c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02200c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01442c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02200c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Ncc69"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04958" sboTerm="SBO:0000185" id="MAR04958" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04958" sboTerm="SBO:0000185" id="R_MAR04958" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -290516,7 +290493,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04958">
+            <rdf:Description rdf:about="#R_MAR04958">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/RIBt"/>
@@ -290528,13 +290505,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02843c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02843c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02843e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02843e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR04969" sboTerm="SBO:0000185" id="MAR04969" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04969" sboTerm="SBO:0000185" id="R_MAR04969" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -290543,7 +290520,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04969">
+            <rdf:Description rdf:about="#R_MAR04969">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/NCAMUP"/>
@@ -290556,13 +290533,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02583c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02583c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02583e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02583e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR04973" sboTerm="SBO:0000185" id="MAR04973" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04973" sboTerm="SBO:0000185" id="R_MAR04973" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -290571,7 +290548,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04973">
+            <rdf:Description rdf:about="#R_MAR04973">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/MANt1r"/>
@@ -290583,16 +290560,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02453c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02453c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02453e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02453e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Glut1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04976" sboTerm="SBO:0000185" id="MAR04976" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04976" sboTerm="SBO:0000185" id="R_MAR04976" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -290601,7 +290578,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04976">
+            <rdf:Description rdf:about="#R_MAR04976">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ACACt2"/>
@@ -290614,12 +290591,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01253e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01253e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01253c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01253c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -290629,7 +290606,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04980" sboTerm="SBO:0000185" id="MAR04980" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04980" sboTerm="SBO:0000185" id="R_MAR04980" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -290638,7 +290615,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04980">
+            <rdf:Description rdf:about="#R_MAR04980">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/THYMt"/>
@@ -290651,16 +290628,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02997c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02997c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02997e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02997e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Ent1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04982" sboTerm="SBO:0000185" id="MAR04982" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04982" sboTerm="SBO:0000185" id="R_MAR04982" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -290669,7 +290646,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04982">
+            <rdf:Description rdf:about="#R_MAR04982">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/SARCStex"/>
@@ -290681,13 +290658,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02880c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02880c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02880e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02880e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR04983" sboTerm="SBO:0000185" id="MAR04983" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04983" sboTerm="SBO:0000185" id="R_MAR04983" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -290696,7 +290673,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04983">
+            <rdf:Description rdf:about="#R_MAR04983">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/THMDt4"/>
@@ -290709,12 +290686,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02996e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02996e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02996c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02996c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -290723,7 +290700,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04985" sboTerm="SBO:0000185" id="MAR04985" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04985" sboTerm="SBO:0000185" id="R_MAR04985" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -290732,7 +290709,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04985">
+            <rdf:Description rdf:about="#R_MAR04985">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GUAt"/>
@@ -290745,16 +290722,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02037c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02037c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02037e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02037e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Ent1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04989" sboTerm="SBO:0000185" id="MAR04989" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04989" sboTerm="SBO:0000185" id="R_MAR04989" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -290763,7 +290740,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04989">
+            <rdf:Description rdf:about="#R_MAR04989">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/NACt"/>
@@ -290776,13 +290753,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02586c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02586c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02586e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02586e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR04990" sboTerm="SBO:0000185" id="MAR04990" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04990" sboTerm="SBO:0000185" id="R_MAR04990" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -290790,7 +290767,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04990">
+            <rdf:Description rdf:about="#R_MAR04990">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105404"/>
@@ -290801,13 +290778,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02042c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02042c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02042e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02042e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR04993" sboTerm="SBO:0000185" id="MAR04993" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04993" sboTerm="SBO:0000185" id="R_MAR04993" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -290816,7 +290793,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04993">
+            <rdf:Description rdf:about="#R_MAR04993">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PYDXNtr"/>
@@ -290830,13 +290807,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02817c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02817c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02817e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02817e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR04994" sboTerm="SBO:0000185" id="MAR04994" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04994" sboTerm="SBO:0000185" id="R_MAR04994" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -290845,7 +290822,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04994">
+            <rdf:Description rdf:about="#R_MAR04994">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR104495"/>
@@ -290859,16 +290836,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02923c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02923c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02923e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02923e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG6126"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04995" sboTerm="SBO:0000185" id="MAR04995" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04995" sboTerm="SBO:0000185" id="R_MAR04995" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -290877,7 +290854,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04995">
+            <rdf:Description rdf:about="#R_MAR04995">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105405"/>
@@ -290888,17 +290865,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01588e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02658c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01588e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02658c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01588c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02658e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01588c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02658e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR04996" sboTerm="SBO:0000185" id="MAR04996" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04996" sboTerm="SBO:0000185" id="R_MAR04996" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -290907,7 +290884,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04996">
+            <rdf:Description rdf:about="#R_MAR04996">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GAMt1r"/>
@@ -290920,16 +290897,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01962e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01962e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01962c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01962c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Glut1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04999" sboTerm="SBO:0000185" id="MAR04999" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04999" sboTerm="SBO:0000185" id="R_MAR04999" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -290938,7 +290915,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04999">
+            <rdf:Description rdf:about="#R_MAR04999">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/HISTAtu"/>
@@ -290953,16 +290930,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02124c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02124c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02124e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02124e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG6126"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05000" sboTerm="SBO:0000185" id="MAR05000" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05000" sboTerm="SBO:0000185" id="R_MAR05000" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -290970,7 +290947,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05000">
+            <rdf:Description rdf:about="#R_MAR05000">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ETOHt"/>
@@ -290984,13 +290961,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01796c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01796c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01796e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01796e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05002" sboTerm="SBO:0000185" id="MAR05002" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05002" sboTerm="SBO:0000185" id="R_MAR05002" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -290999,7 +290976,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05002">
+            <rdf:Description rdf:about="#R_MAR05002">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/RBTt"/>
@@ -291011,13 +290988,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02841c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02841c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02841e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02841e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05003" sboTerm="SBO:0000185" id="MAR05003" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05003" sboTerm="SBO:0000185" id="R_MAR05003" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -291026,7 +291003,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05003">
+            <rdf:Description rdf:about="#R_MAR05003">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CYTDt"/>
@@ -291039,16 +291016,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01630e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01630e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Ent1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05005" sboTerm="SBO:0000185" id="MAR05005" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05005" sboTerm="SBO:0000185" id="R_MAR05005" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -291057,7 +291034,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05005">
+            <rdf:Description rdf:about="#R_MAR05005">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105407"/>
@@ -291069,12 +291046,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01396e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01396e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01396c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01396c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -291083,7 +291060,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05008" sboTerm="SBO:0000185" id="MAR05008" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05008" sboTerm="SBO:0000185" id="R_MAR05008" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -291092,7 +291069,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05008">
+            <rdf:Description rdf:about="#R_MAR05008">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/DURIt"/>
@@ -291105,16 +291082,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01673c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01673c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01673e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01673e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Ent1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05009" sboTerm="SBO:0000185" id="MAR05009" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05009" sboTerm="SBO:0000185" id="R_MAR05009" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -291122,7 +291099,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05009">
+            <rdf:Description rdf:about="#R_MAR05009">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/NOt"/>
@@ -291135,13 +291112,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02609c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02609c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02609e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02609e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05010" sboTerm="SBO:0000185" id="MAR05010" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05010" sboTerm="SBO:0000185" id="R_MAR05010" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -291150,7 +291127,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05010">
+            <rdf:Description rdf:about="#R_MAR05010">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PYDAMtr"/>
@@ -291164,13 +291141,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02815c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02815c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02815e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02815e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05011" sboTerm="SBO:0000185" id="MAR05011" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05011" sboTerm="SBO:0000185" id="R_MAR05011" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -291178,7 +291155,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05011">
+            <rdf:Description rdf:about="#R_MAR05011">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/MTHGXLt"/>
@@ -291190,13 +291167,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02475c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02475c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02475e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02475e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05013" sboTerm="SBO:0000185" id="MAR05013" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05013" sboTerm="SBO:0000185" id="R_MAR05013" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -291205,7 +291182,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05013">
+            <rdf:Description rdf:about="#R_MAR05013">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/SPRMti"/>
@@ -291216,16 +291193,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02926c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02926c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02926e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02926e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG6126"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05018" sboTerm="SBO:0000185" id="MAR05018" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05018" sboTerm="SBO:0000185" id="R_MAR05018" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -291234,7 +291211,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05018">
+            <rdf:Description rdf:about="#R_MAR05018">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/BHBt"/>
@@ -291247,12 +291224,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00157e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00157e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00157c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00157c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -291262,7 +291239,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05020" sboTerm="SBO:0000185" id="MAR05020" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05020" sboTerm="SBO:0000185" id="R_MAR05020" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -291270,7 +291247,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05020">
+            <rdf:Description rdf:about="#R_MAR05020">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/D_3AIBt"/>
@@ -291281,13 +291258,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01633c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01633c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01633e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01633e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05021" sboTerm="SBO:0000185" id="MAR05021" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05021" sboTerm="SBO:0000185" id="R_MAR05021" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -291296,7 +291273,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05021">
+            <rdf:Description rdf:about="#R_MAR05021">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ASCBt4"/>
@@ -291309,18 +291286,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01368e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01368e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01368c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01368c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG6293"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05023" sboTerm="SBO:0000185" id="MAR05023" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05023" sboTerm="SBO:0000185" id="R_MAR05023" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -291328,7 +291305,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05023">
+            <rdf:Description rdf:about="#R_MAR05023">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/NH4t3r"/>
@@ -291342,16 +291319,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02579c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02579c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02579e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02579e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Rh50"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05029" sboTerm="SBO:0000185" id="MAR05029" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05029" sboTerm="SBO:0000185" id="R_MAR05029" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -291360,7 +291337,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05029">
+            <rdf:Description rdf:about="#R_MAR05029">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GLCt2"/>
@@ -291374,10 +291351,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01965c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01965c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01965e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01965e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -291387,7 +291364,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05032" sboTerm="SBO:0000185" id="MAR05032" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05032" sboTerm="SBO:0000185" id="R_MAR05032" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -291396,7 +291373,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05032">
+            <rdf:Description rdf:about="#R_MAR05032">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ADNt"/>
@@ -291410,10 +291387,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01280c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01280c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01280e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01280e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -291422,7 +291399,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05034" sboTerm="SBO:0000185" id="MAR05034" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05034" sboTerm="SBO:0000185" id="R_MAR05034" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -291431,7 +291408,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05034">
+            <rdf:Description rdf:about="#R_MAR05034">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/THYMDt1"/>
@@ -291445,16 +291422,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02996c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02996c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02996e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02996e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Ent1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05035" sboTerm="SBO:0000185" id="MAR05035" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05035" sboTerm="SBO:0000185" id="R_MAR05035" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -291463,7 +291440,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05035">
+            <rdf:Description rdf:about="#R_MAR05035">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/URIt"/>
@@ -291476,16 +291453,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03123c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03123c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03123e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03123e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Ent1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05037" sboTerm="SBO:0000185" id="MAR05037" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05037" sboTerm="SBO:0000185" id="R_MAR05037" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -291494,7 +291471,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05037">
+            <rdf:Description rdf:about="#R_MAR05037">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GSNt"/>
@@ -291507,16 +291484,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02038c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02038c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02038e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02038e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Ent1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05038" sboTerm="SBO:0000185" id="MAR05038" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05038" sboTerm="SBO:0000185" id="R_MAR05038" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -291525,7 +291502,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05038">
+            <rdf:Description rdf:about="#R_MAR05038">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CYTDt4"/>
@@ -291538,12 +291515,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01630e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01630e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01630c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -291552,7 +291529,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05039" sboTerm="SBO:0000185" id="MAR05039" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05039" sboTerm="SBO:0000185" id="R_MAR05039" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -291561,7 +291538,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05039">
+            <rdf:Description rdf:about="#R_MAR05039">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105433"/>
@@ -291573,12 +291550,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01666e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01666e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01666c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01666c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -291587,7 +291564,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05040" sboTerm="SBO:0000185" id="MAR05040" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05040" sboTerm="SBO:0000185" id="R_MAR05040" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -291596,7 +291573,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05040">
+            <rdf:Description rdf:about="#R_MAR05040">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105434"/>
@@ -291608,12 +291585,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01668e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01668e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01668c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01668c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -291622,7 +291599,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05041" sboTerm="SBO:0000185" id="MAR05041" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05041" sboTerm="SBO:0000185" id="R_MAR05041" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -291631,7 +291608,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05041">
+            <rdf:Description rdf:about="#R_MAR05041">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105435"/>
@@ -291643,12 +291620,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01669e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01669e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01669c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01669c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -291657,7 +291634,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05042" sboTerm="SBO:0000185" id="MAR05042" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05042" sboTerm="SBO:0000185" id="R_MAR05042" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -291666,7 +291643,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05042">
+            <rdf:Description rdf:about="#R_MAR05042">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/INSt"/>
@@ -291679,16 +291656,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02170c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02170c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02170e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02170e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Ent1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05068" sboTerm="SBO:0000185" id="MAR05068" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05068" sboTerm="SBO:0000185" id="R_MAR05068" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -291697,7 +291674,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05068">
+            <rdf:Description rdf:about="#R_MAR05068">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ARGt5r"/>
@@ -291712,16 +291689,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01365e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01365e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01365c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01365c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="slif"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05070" sboTerm="SBO:0000185" id="MAR05070" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05070" sboTerm="SBO:0000185" id="R_MAR05070" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -291730,7 +291707,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05070">
+            <rdf:Description rdf:about="#R_MAR05070">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/HIStiDF"/>
@@ -291746,10 +291723,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02125c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02125c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02125e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02125e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -291759,7 +291736,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05071" sboTerm="SBO:0000185" id="MAR05071" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05071" sboTerm="SBO:0000185" id="R_MAR05071" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -291768,7 +291745,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05071">
+            <rdf:Description rdf:about="#R_MAR05071">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/LYSt5r"/>
@@ -291783,16 +291760,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02426e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02426e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02426c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02426c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="slif"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05073" sboTerm="SBO:0000185" id="MAR05073" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05073" sboTerm="SBO:0000185" id="R_MAR05073" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -291801,7 +291778,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05073">
+            <rdf:Description rdf:about="#R_MAR05073">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/METtec"/>
@@ -291816,10 +291793,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02471c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02471c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02471e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02471e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -291829,7 +291806,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05074" sboTerm="SBO:0000185" id="MAR05074" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05074" sboTerm="SBO:0000185" id="R_MAR05074" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -291838,7 +291815,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05074">
+            <rdf:Description rdf:about="#R_MAR05074">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/TYRt"/>
@@ -291854,10 +291831,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03101c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03101c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03101e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03101e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -291868,7 +291845,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05076" sboTerm="SBO:0000185" id="MAR05076" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05076" sboTerm="SBO:0000185" id="R_MAR05076" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -291877,7 +291854,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05076">
+            <rdf:Description rdf:about="#R_MAR05076">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GLYt2r"/>
@@ -291891,10 +291868,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01986e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01986c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -291904,7 +291881,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05077" sboTerm="SBO:0000185" id="MAR05077" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05077" sboTerm="SBO:0000185" id="R_MAR05077" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -291913,7 +291890,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05077">
+            <rdf:Description rdf:about="#R_MAR05077">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ALAt2r"/>
@@ -291928,10 +291905,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01307e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01307e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01307c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01307c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -291941,7 +291918,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05078" sboTerm="SBO:0000185" id="MAR05078" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05078" sboTerm="SBO:0000185" id="R_MAR05078" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -291950,7 +291927,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05078">
+            <rdf:Description rdf:about="#R_MAR05078">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR100259"/>
@@ -291964,10 +291941,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01975c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01975c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01975e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01975e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -291977,7 +291954,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05079" sboTerm="SBO:0000185" id="MAR05079" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05079" sboTerm="SBO:0000185" id="R_MAR05079" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -291986,7 +291963,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05079">
+            <rdf:Description rdf:about="#R_MAR05079">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR104354"/>
@@ -292000,10 +291977,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02896e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02896e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02896c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02896c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -292013,7 +291990,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05080" sboTerm="SBO:0000185" id="MAR05080" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05080" sboTerm="SBO:0000185" id="R_MAR05080" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -292022,7 +291999,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05080">
+            <rdf:Description rdf:about="#R_MAR05080">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/TRPt"/>
@@ -292037,10 +292014,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03089c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03089c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03089e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03089e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -292051,7 +292028,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05082" sboTerm="SBO:0000185" id="MAR05082" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05082" sboTerm="SBO:0000185" id="R_MAR05082" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -292060,7 +292037,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05082">
+            <rdf:Description rdf:about="#R_MAR05082">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PHEtec"/>
@@ -292075,10 +292052,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02724c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02724c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02724e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02724e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -292089,7 +292066,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05084" sboTerm="SBO:0000185" id="MAR05084" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05084" sboTerm="SBO:0000185" id="R_MAR05084" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -292098,7 +292075,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05084">
+            <rdf:Description rdf:about="#R_MAR05084">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CYStec"/>
@@ -292113,10 +292090,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01628e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01628e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01628c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01628c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -292126,7 +292103,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05085" sboTerm="SBO:0000185" id="MAR05085" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05085" sboTerm="SBO:0000185" id="R_MAR05085" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -292135,7 +292112,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05085">
+            <rdf:Description rdf:about="#R_MAR05085">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/LEUtec"/>
@@ -292150,10 +292127,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02360c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02360c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02360e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02360e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -292163,7 +292140,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05087" sboTerm="SBO:0000185" id="MAR05087" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05087" sboTerm="SBO:0000185" id="R_MAR05087" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -292172,7 +292149,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05087">
+            <rdf:Description rdf:about="#R_MAR05087">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PROt2r"/>
@@ -292187,10 +292164,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02770c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02770c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02770e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02770e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -292200,7 +292177,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05088" sboTerm="SBO:0000185" id="MAR05088" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05088" sboTerm="SBO:0000185" id="R_MAR05088" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -292209,7 +292186,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05088">
+            <rdf:Description rdf:about="#R_MAR05088">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR96069"/>
@@ -292223,10 +292200,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01369e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01369e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01369c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01369c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -292236,7 +292213,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05089" sboTerm="SBO:0000185" id="MAR05089" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05089" sboTerm="SBO:0000185" id="R_MAR05089" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -292245,7 +292222,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05089">
+            <rdf:Description rdf:about="#R_MAR05089">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/VALtec"/>
@@ -292260,10 +292237,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03135c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03135c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03135e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03135e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -292273,7 +292250,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05091" sboTerm="SBO:0000185" id="MAR05091" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05091" sboTerm="SBO:0000185" id="R_MAR05091" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -292282,7 +292259,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05091">
+            <rdf:Description rdf:about="#R_MAR05091">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR104852"/>
@@ -292296,10 +292273,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02993e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02993e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02993c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02993c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -292309,7 +292286,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05092" sboTerm="SBO:0000185" id="MAR05092" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05092" sboTerm="SBO:0000185" id="R_MAR05092" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -292318,7 +292295,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05092">
+            <rdf:Description rdf:about="#R_MAR05092">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ILEtec"/>
@@ -292333,10 +292310,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02184c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02184c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02184e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02184e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -292346,7 +292323,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05094" sboTerm="SBO:0000185" id="MAR05094" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05094" sboTerm="SBO:0000185" id="R_MAR05094" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -292355,7 +292332,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05094">
+            <rdf:Description rdf:about="#R_MAR05094">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/ORNtiDF"/>
@@ -292368,16 +292345,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02658e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02658e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02658c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02658c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="slif"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05129" sboTerm="SBO:0000185" id="MAR05129" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05129" sboTerm="SBO:0000185" id="R_MAR05129" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -292386,7 +292363,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05129">
+            <rdf:Description rdf:about="#R_MAR05129">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GSNt4"/>
@@ -292399,12 +292376,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02038e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02038e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02038c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02038c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -292413,7 +292390,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05198" sboTerm="SBO:0000185" id="MAR05198" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05198" sboTerm="SBO:0000185" id="R_MAR05198" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -292422,7 +292399,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05198">
+            <rdf:Description rdf:about="#R_MAR05198">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/r0802"/>
@@ -292432,13 +292409,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01308c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01308c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01308e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01308e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05200" sboTerm="SBO:0000185" id="MAR05200" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05200" sboTerm="SBO:0000185" id="R_MAR05200" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -292446,7 +292423,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05200">
+            <rdf:Description rdf:about="#R_MAR05200">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/r0804"/>
@@ -292456,13 +292433,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01343c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01343c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01343e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01343e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05202" sboTerm="SBO:0000185" id="MAR05202" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05202" sboTerm="SBO:0000185" id="R_MAR05202" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -292471,7 +292448,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05202">
+            <rdf:Description rdf:about="#R_MAR05202">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/r0806"/>
@@ -292481,13 +292458,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01345c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01345c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01345e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01345e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05206" sboTerm="SBO:0000185" id="MAR05206" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05206" sboTerm="SBO:0000185" id="R_MAR05206" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -292496,7 +292473,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05206">
+            <rdf:Description rdf:about="#R_MAR05206">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105391"/>
@@ -292508,13 +292485,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01350c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01350c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01350e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01350e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05213" sboTerm="SBO:0000185" id="MAR05213" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05213" sboTerm="SBO:0000185" id="R_MAR05213" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -292523,7 +292500,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05213">
+            <rdf:Description rdf:about="#R_MAR05213">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/r1033"/>
@@ -292533,13 +292510,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01827c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01827c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01827e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01827e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05215" sboTerm="SBO:0000185" id="MAR05215" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05215" sboTerm="SBO:0000185" id="R_MAR05215" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -292547,7 +292524,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05215">
+            <rdf:Description rdf:about="#R_MAR05215">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/r1048"/>
@@ -292557,13 +292534,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02044c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02044c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02044e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02044e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05216" sboTerm="SBO:0000185" id="MAR05216" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05216" sboTerm="SBO:0000185" id="R_MAR05216" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -292571,7 +292548,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05216">
+            <rdf:Description rdf:about="#R_MAR05216">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/r1054"/>
@@ -292581,13 +292558,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02753c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02753c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02753e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02753e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05219" sboTerm="SBO:0000185" id="MAR05219" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05219" sboTerm="SBO:0000185" id="R_MAR05219" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -292595,7 +292572,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05219">
+            <rdf:Description rdf:about="#R_MAR05219">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/r1056"/>
@@ -292605,13 +292582,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02802c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02802c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02802e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02802e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05221" sboTerm="SBO:0000185" id="MAR05221" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05221" sboTerm="SBO:0000185" id="R_MAR05221" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -292619,7 +292596,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05221">
+            <rdf:Description rdf:about="#R_MAR05221">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/r1081"/>
@@ -292629,13 +292606,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00186c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00186c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00186e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00186e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05231" sboTerm="SBO:0000185" id="MAR05231" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05231" sboTerm="SBO:0000185" id="R_MAR05231" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -292643,7 +292620,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05231">
+            <rdf:Description rdf:about="#R_MAR05231">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_5231"/>
@@ -292653,13 +292630,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02414c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02414c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02414e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02414e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05232" sboTerm="SBO:0000185" id="MAR05232" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05232" sboTerm="SBO:0000185" id="R_MAR05232" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -292667,7 +292644,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05232">
+            <rdf:Description rdf:about="#R_MAR05232">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_5232"/>
@@ -292677,13 +292654,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02047e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02047e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02047l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02047l" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05236" sboTerm="SBO:0000185" id="MAR05236" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05236" sboTerm="SBO:0000185" id="R_MAR05236" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -292691,7 +292668,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05236">
+            <rdf:Description rdf:about="#R_MAR05236">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_5236"/>
@@ -292701,13 +292678,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02048r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02048r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02048e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02048e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05237" sboTerm="SBO:0000185" id="MAR05237" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05237" sboTerm="SBO:0000185" id="R_MAR05237" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -292715,7 +292692,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05237">
+            <rdf:Description rdf:about="#R_MAR05237">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_5237"/>
@@ -292725,13 +292702,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02352e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02352e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02352l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02352l" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05240" sboTerm="SBO:0000185" id="MAR05240" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05240" sboTerm="SBO:0000185" id="R_MAR05240" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -292739,7 +292716,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05240">
+            <rdf:Description rdf:about="#R_MAR05240">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_5240"/>
@@ -292749,13 +292726,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02353r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02353r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02353e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02353e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05241" sboTerm="SBO:0000185" id="MAR05241" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05241" sboTerm="SBO:0000185" id="R_MAR05241" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -292763,7 +292740,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05241">
+            <rdf:Description rdf:about="#R_MAR05241">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_5241"/>
@@ -292773,10 +292750,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03146e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03146e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03146l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03146l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -292785,7 +292762,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05246" sboTerm="SBO:0000185" id="MAR05246" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05246" sboTerm="SBO:0000185" id="R_MAR05246" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -292793,7 +292770,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05246">
+            <rdf:Description rdf:about="#R_MAR05246">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_5246"/>
@@ -292803,10 +292780,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01569e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01569e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01569l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01569l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -292815,7 +292792,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05295" sboTerm="SBO:0000185" id="MAR05295" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05295" sboTerm="SBO:0000185" id="R_MAR05295" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -292824,7 +292801,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05295">
+            <rdf:Description rdf:about="#R_MAR05295">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.6.3.9"/>
@@ -292835,20 +292812,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02200e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02200e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02200c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02200c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05296" sboTerm="SBO:0000185" id="MAR05296" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05296" sboTerm="SBO:0000185" id="R_MAR05296" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -292856,7 +292833,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05296">
+            <rdf:Description rdf:about="#R_MAR05296">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/MEOHt2"/>
@@ -292870,13 +292847,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02470c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02470c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02470e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02470e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05303" sboTerm="SBO:0000185" id="MAR05303" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05303" sboTerm="SBO:0000185" id="R_MAR05303" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -292885,7 +292862,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05303">
+            <rdf:Description rdf:about="#R_MAR05303">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR96140"/>
@@ -292896,13 +292873,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01371e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05305" sboTerm="SBO:0000185" id="MAR05305" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05305" sboTerm="SBO:0000185" id="R_MAR05305" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -292911,7 +292888,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05305">
+            <rdf:Description rdf:about="#R_MAR05305">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ALAt4"/>
@@ -292924,12 +292901,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01307e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01307e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01307c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01307c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -292941,7 +292918,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05307" sboTerm="SBO:0000185" id="MAR05307" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05307" sboTerm="SBO:0000185" id="R_MAR05307" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -292949,7 +292926,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05307">
+            <rdf:Description rdf:about="#R_MAR05307">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ALAtN1"/>
@@ -292961,20 +292938,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01307e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01307e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="2" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01307c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01307c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="2" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="mah"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05308" sboTerm="SBO:0000185" id="MAR05308" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05308" sboTerm="SBO:0000185" id="R_MAR05308" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -292983,7 +292960,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05308">
+            <rdf:Description rdf:about="#R_MAR05308">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GLNt4"/>
@@ -292996,12 +292973,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01975e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01975e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01975c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01975c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -293012,7 +292989,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05310" sboTerm="SBO:0000185" id="MAR05310" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05310" sboTerm="SBO:0000185" id="R_MAR05310" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -293020,7 +292997,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05310">
+            <rdf:Description rdf:about="#R_MAR05310">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GLNtN1"/>
@@ -293032,20 +293009,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01975e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01975e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="2" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01975c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01975c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="2" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="mah"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05311" sboTerm="SBO:0000185" id="MAR05311" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05311" sboTerm="SBO:0000185" id="R_MAR05311" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -293054,7 +293031,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05311">
+            <rdf:Description rdf:about="#R_MAR05311">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ASNt4"/>
@@ -293067,12 +293044,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01369e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01369e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01369c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01369c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -293082,7 +293059,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05313" sboTerm="SBO:0000185" id="MAR05313" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05313" sboTerm="SBO:0000185" id="R_MAR05313" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -293090,7 +293067,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05313">
+            <rdf:Description rdf:about="#R_MAR05313">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ASNtN1"/>
@@ -293102,20 +293079,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01369e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01369e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="2" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01369c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01369c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="2" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="mah"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05314" sboTerm="SBO:0000185" id="MAR05314" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05314" sboTerm="SBO:0000185" id="R_MAR05314" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -293124,7 +293101,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05314">
+            <rdf:Description rdf:about="#R_MAR05314">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/VALt4"/>
@@ -293137,12 +293114,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03135e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03135e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03135c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03135c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -293151,7 +293128,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05315" sboTerm="SBO:0000185" id="MAR05315" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05315" sboTerm="SBO:0000185" id="R_MAR05315" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -293160,7 +293137,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05315">
+            <rdf:Description rdf:about="#R_MAR05315">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/LEUt4"/>
@@ -293172,12 +293149,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02360e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02360e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02360c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02360c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -293189,7 +293166,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05316" sboTerm="SBO:0000185" id="MAR05316" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05316" sboTerm="SBO:0000185" id="R_MAR05316" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -293198,7 +293175,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05316">
+            <rdf:Description rdf:about="#R_MAR05316">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ILEt4"/>
@@ -293211,12 +293188,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02184e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02184e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02184c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02184c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -293225,7 +293202,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05317" sboTerm="SBO:0000185" id="MAR05317" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05317" sboTerm="SBO:0000185" id="R_MAR05317" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -293233,7 +293210,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05317">
+            <rdf:Description rdf:about="#R_MAR05317">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/TRPt4"/>
@@ -293245,12 +293222,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03089e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03089e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03089c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03089c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -293259,7 +293236,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05318" sboTerm="SBO:0000185" id="MAR05318" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05318" sboTerm="SBO:0000185" id="R_MAR05318" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -293267,7 +293244,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05318">
+            <rdf:Description rdf:about="#R_MAR05318">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/TYRt4"/>
@@ -293279,12 +293256,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03101e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03101e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03101c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03101c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -293293,7 +293270,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05319" sboTerm="SBO:0000185" id="MAR05319" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05319" sboTerm="SBO:0000185" id="R_MAR05319" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -293301,7 +293278,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05319">
+            <rdf:Description rdf:about="#R_MAR05319">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PHEt4"/>
@@ -293313,12 +293290,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02724e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02724e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02724c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02724c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -293329,7 +293306,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05320" sboTerm="SBO:0000185" id="MAR05320" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05320" sboTerm="SBO:0000185" id="R_MAR05320" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -293338,7 +293315,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05320">
+            <rdf:Description rdf:about="#R_MAR05320">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GLYt4"/>
@@ -293351,12 +293328,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01986e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01986c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -293366,7 +293343,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05322" sboTerm="SBO:0000185" id="MAR05322" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05322" sboTerm="SBO:0000185" id="R_MAR05322" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -293375,7 +293352,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05322">
+            <rdf:Description rdf:about="#R_MAR05322">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PROt4"/>
@@ -293388,12 +293365,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02770e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02770e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02770c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02770c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -293409,7 +293386,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05324" sboTerm="SBO:0000185" id="MAR05324" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05324" sboTerm="SBO:0000185" id="R_MAR05324" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -293418,7 +293395,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05324">
+            <rdf:Description rdf:about="#R_MAR05324">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/METt4"/>
@@ -293431,12 +293408,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02471e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02471e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02471c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02471c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -293447,7 +293424,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05326" sboTerm="SBO:0000185" id="MAR05326" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05326" sboTerm="SBO:0000185" id="R_MAR05326" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -293456,7 +293433,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05326">
+            <rdf:Description rdf:about="#R_MAR05326">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/THRt4"/>
@@ -293469,12 +293446,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02993e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02993e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02993c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02993c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -293484,7 +293461,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05328" sboTerm="SBO:0000185" id="MAR05328" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05328" sboTerm="SBO:0000185" id="R_MAR05328" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -293493,7 +293470,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05328">
+            <rdf:Description rdf:about="#R_MAR05328">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/r1143"/>
@@ -293506,12 +293483,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01370e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01370e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01370c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01370c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -293521,7 +293498,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05330" sboTerm="SBO:0000185" id="MAR05330" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05330" sboTerm="SBO:0000185" id="R_MAR05330" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -293530,7 +293507,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05330">
+            <rdf:Description rdf:about="#R_MAR05330">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GLUt4"/>
@@ -293543,12 +293520,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01974e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01974e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01974c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01974c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -293559,7 +293536,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05332" sboTerm="SBO:0000185" id="MAR05332" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05332" sboTerm="SBO:0000185" id="R_MAR05332" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -293567,7 +293544,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05332">
+            <rdf:Description rdf:about="#R_MAR05332">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GLUVESSEC"/>
@@ -293579,21 +293556,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01974c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01974c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01974e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01974e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="VGlut"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05333" sboTerm="SBO:0000185" id="MAR05333" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05333" sboTerm="SBO:0000185" id="R_MAR05333" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -293602,7 +293579,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05333">
+            <rdf:Description rdf:about="#R_MAR05333">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/HISt4"/>
@@ -293615,12 +293592,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02125e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02125e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02125c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02125c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -293629,7 +293606,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05413" sboTerm="SBO:0000185" id="MAR05413" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05413" sboTerm="SBO:0000185" id="R_MAR05413" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -293637,7 +293614,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05413">
+            <rdf:Description rdf:about="#R_MAR05413">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PIt2r"/>
@@ -293651,15 +293628,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05429" sboTerm="SBO:0000185" id="MAR05429" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05429" sboTerm="SBO:0000185" id="R_MAR05429" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -293668,7 +293645,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05429">
+            <rdf:Description rdf:about="#R_MAR05429">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/NaKt"/>
@@ -293680,20 +293657,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02200e" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02200e" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="3" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02200c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02200c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05430" sboTerm="SBO:0000185" id="MAR05430" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05430" sboTerm="SBO:0000185" id="R_MAR05430" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -293702,7 +293679,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05430">
+            <rdf:Description rdf:about="#R_MAR05430">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/NAt3_1"/>
@@ -293715,12 +293692,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -293729,7 +293706,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05432" sboTerm="SBO:0000185" id="MAR05432" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05432" sboTerm="SBO:0000185" id="R_MAR05432" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -293738,7 +293715,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05432">
+            <rdf:Description rdf:about="#R_MAR05432">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/HCO3_NAt"/>
@@ -293751,18 +293728,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Ndae1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05433" sboTerm="SBO:0000185" id="MAR05433" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05433" sboTerm="SBO:0000185" id="R_MAR05433" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -293771,7 +293748,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05433">
+            <rdf:Description rdf:about="#R_MAR05433">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR100950"/>
@@ -293782,10 +293759,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02200c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02200c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02200e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02200e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:and>
@@ -293794,7 +293771,7 @@
           </fbc:and>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05435" sboTerm="SBO:0000185" id="MAR05435" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05435" sboTerm="SBO:0000185" id="R_MAR05435" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -293803,7 +293780,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05435">
+            <rdf:Description rdf:about="#R_MAR05435">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105481"/>
@@ -293815,12 +293792,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02519e" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02965e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02965e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02519c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02965c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02965c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -293829,7 +293806,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05436" sboTerm="SBO:0000185" id="MAR05436" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05436" sboTerm="SBO:0000185" id="R_MAR05436" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -293838,7 +293815,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05436">
+            <rdf:Description rdf:about="#R_MAR05436">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105482"/>
@@ -293850,12 +293827,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02000e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02000e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="2" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02000c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02000c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="2" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -293864,7 +293841,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05437" sboTerm="SBO:0000185" id="MAR05437" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05437" sboTerm="SBO:0000185" id="R_MAR05437" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -293873,7 +293850,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05437">
+            <rdf:Description rdf:about="#R_MAR05437">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105483"/>
@@ -293885,12 +293862,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02519e" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02966e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02966e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02519c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02966c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02966c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -293899,7 +293876,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05438" sboTerm="SBO:0000185" id="MAR05438" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05438" sboTerm="SBO:0000185" id="R_MAR05438" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -293908,7 +293885,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05438">
+            <rdf:Description rdf:about="#R_MAR05438">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105484"/>
@@ -293920,12 +293897,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02004e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02004e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="2" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02004c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02004c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="2" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -293934,7 +293911,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05439" sboTerm="SBO:0000185" id="MAR05439" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05439" sboTerm="SBO:0000185" id="R_MAR05439" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -293943,7 +293920,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05439">
+            <rdf:Description rdf:about="#R_MAR05439">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105485"/>
@@ -293955,12 +293932,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02519e" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02950e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02950e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02519c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02950c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02950c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -293969,7 +293946,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05440" sboTerm="SBO:0000185" id="MAR05440" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05440" sboTerm="SBO:0000185" id="R_MAR05440" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -293978,7 +293955,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05440">
+            <rdf:Description rdf:about="#R_MAR05440">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR96262"/>
@@ -293989,13 +293966,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01396e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01396e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01396c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01396c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05446" sboTerm="SBO:0000185" id="MAR05446" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05446" sboTerm="SBO:0000185" id="R_MAR05446" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -294004,7 +293981,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05446">
+            <rdf:Description rdf:about="#R_MAR05446">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105504"/>
@@ -294018,15 +293995,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03120c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03120c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03120e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03120e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -294035,7 +294012,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05447" sboTerm="SBO:0000185" id="MAR05447" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05447" sboTerm="SBO:0000185" id="R_MAR05447" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -294044,7 +294021,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05447">
+            <rdf:Description rdf:about="#R_MAR05447">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ASPt6"/>
@@ -294057,16 +294034,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01370e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02200c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM01370e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02200c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="3" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01370c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02200e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM01370c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02200e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="3" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -294075,7 +294052,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05448" sboTerm="SBO:0000185" id="MAR05448" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05448" sboTerm="SBO:0000185" id="R_MAR05448" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -294084,7 +294061,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05448">
+            <rdf:Description rdf:about="#R_MAR05448">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/HCO3_2NAt"/>
@@ -294097,18 +294074,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="2" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="2" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Ndae1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05450" sboTerm="SBO:0000185" id="MAR05450" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05450" sboTerm="SBO:0000185" id="R_MAR05450" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -294117,7 +294094,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05450">
+            <rdf:Description rdf:about="#R_MAR05450">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GLCt4"/>
@@ -294130,18 +294107,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01965e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01965e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01965c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01965c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG10444"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05455" sboTerm="SBO:0000185" id="MAR05455" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05455" sboTerm="SBO:0000185" id="R_MAR05455" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -294150,7 +294127,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05455">
+            <rdf:Description rdf:about="#R_MAR05455">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GLYt7_211_r"/>
@@ -294162,20 +294139,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01442e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01986e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01442e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="2" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01442c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01986c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01442c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="2" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="GlyT"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05457" sboTerm="SBO:0000185" id="MAR05457" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05457" sboTerm="SBO:0000185" id="R_MAR05457" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -294183,7 +294160,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05457">
+            <rdf:Description rdf:about="#R_MAR05457">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GLYt7_311_r"/>
@@ -294194,20 +294171,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01442e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01986e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM01442e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="3" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01442c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01986c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM01442c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="3" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="GlyT"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05458" sboTerm="SBO:0000185" id="MAR05458" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05458" sboTerm="SBO:0000185" id="R_MAR05458" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -294216,7 +294193,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05458">
+            <rdf:Description rdf:about="#R_MAR05458">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ALAGLYexR"/>
@@ -294229,15 +294206,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01307c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01986e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01307c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01307e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01986c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01307e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05459" sboTerm="SBO:0000185" id="MAR05459" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05459" sboTerm="SBO:0000185" id="R_MAR05459" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -294246,7 +294223,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05459">
+            <rdf:Description rdf:about="#R_MAR05459">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105505"/>
@@ -294258,15 +294235,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01975c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01986e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01975c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01975e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01986c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01975e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05460" sboTerm="SBO:0000185" id="MAR05460" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05460" sboTerm="SBO:0000185" id="R_MAR05460" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -294275,7 +294252,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05460">
+            <rdf:Description rdf:about="#R_MAR05460">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/SERGLYexR"/>
@@ -294288,15 +294265,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01986c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02896e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02896e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01986e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02896c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02896c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05461" sboTerm="SBO:0000185" id="MAR05461" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05461" sboTerm="SBO:0000185" id="R_MAR05461" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -294305,7 +294282,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05461">
+            <rdf:Description rdf:about="#R_MAR05461">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105506"/>
@@ -294317,15 +294294,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01986c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02471e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02471e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01986e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02471c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02471c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05462" sboTerm="SBO:0000185" id="MAR05462" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05462" sboTerm="SBO:0000185" id="R_MAR05462" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -294334,7 +294311,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05462">
+            <rdf:Description rdf:about="#R_MAR05462">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105507"/>
@@ -294346,15 +294323,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01986c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03089e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03089e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01986e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03089c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03089c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05463" sboTerm="SBO:0000185" id="MAR05463" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05463" sboTerm="SBO:0000185" id="R_MAR05463" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -294363,7 +294340,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05463">
+            <rdf:Description rdf:about="#R_MAR05463">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105508"/>
@@ -294375,15 +294352,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01986c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02724e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02724e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01986e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02724c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02724c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05464" sboTerm="SBO:0000185" id="MAR05464" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05464" sboTerm="SBO:0000185" id="R_MAR05464" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -294392,7 +294369,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05464">
+            <rdf:Description rdf:about="#R_MAR05464">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105509"/>
@@ -294404,15 +294381,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01986c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03101e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03101e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01986e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03101c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03101c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05465" sboTerm="SBO:0000185" id="MAR05465" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05465" sboTerm="SBO:0000185" id="R_MAR05465" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -294421,7 +294398,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05465">
+            <rdf:Description rdf:about="#R_MAR05465">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CYSGLYex"/>
@@ -294434,15 +294411,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01628c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01986e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01628c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01628e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01986c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01628e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05466" sboTerm="SBO:0000185" id="MAR05466" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05466" sboTerm="SBO:0000185" id="R_MAR05466" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -294451,7 +294428,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05466">
+            <rdf:Description rdf:about="#R_MAR05466">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105510"/>
@@ -294463,15 +294440,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01986c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02360e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02360e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01986e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02360c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02360c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05467" sboTerm="SBO:0000185" id="MAR05467" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05467" sboTerm="SBO:0000185" id="R_MAR05467" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -294480,7 +294457,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05467">
+            <rdf:Description rdf:about="#R_MAR05467">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105511"/>
@@ -294492,15 +294469,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01986c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02770e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02770e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01986e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02770c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02770c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05468" sboTerm="SBO:0000185" id="MAR05468" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05468" sboTerm="SBO:0000185" id="R_MAR05468" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -294509,7 +294486,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05468">
+            <rdf:Description rdf:about="#R_MAR05468">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105512"/>
@@ -294521,15 +294498,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01369c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01986e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01369c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01369e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01986c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01369e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05469" sboTerm="SBO:0000185" id="MAR05469" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05469" sboTerm="SBO:0000185" id="R_MAR05469" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -294538,7 +294515,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05469">
+            <rdf:Description rdf:about="#R_MAR05469">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105513"/>
@@ -294550,15 +294527,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01986c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03135e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03135e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01986e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03135c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03135c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05470" sboTerm="SBO:0000185" id="MAR05470" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05470" sboTerm="SBO:0000185" id="R_MAR05470" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -294567,7 +294544,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05470">
+            <rdf:Description rdf:about="#R_MAR05470">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/THRGLYexR"/>
@@ -294580,15 +294557,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01986c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02993e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02993e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01986e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02993c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02993c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05471" sboTerm="SBO:0000185" id="MAR05471" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05471" sboTerm="SBO:0000185" id="R_MAR05471" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -294597,7 +294574,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05471">
+            <rdf:Description rdf:about="#R_MAR05471">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105514"/>
@@ -294609,15 +294586,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01986c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02136e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02136e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01986e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02136c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02136c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05472" sboTerm="SBO:0000185" id="MAR05472" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05472" sboTerm="SBO:0000185" id="R_MAR05472" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -294626,7 +294603,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05472">
+            <rdf:Description rdf:about="#R_MAR05472">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105515"/>
@@ -294638,15 +294615,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01986c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02184e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02184e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01986e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02184c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02184c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05473" sboTerm="SBO:0000185" id="MAR05473" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05473" sboTerm="SBO:0000185" id="R_MAR05473" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -294655,7 +294632,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05473">
+            <rdf:Description rdf:about="#R_MAR05473">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ALAGLNexR"/>
@@ -294668,15 +294645,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01307c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01975e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01307c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01975e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01307e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01975c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01307e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01975c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05474" sboTerm="SBO:0000185" id="MAR05474" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05474" sboTerm="SBO:0000185" id="R_MAR05474" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -294685,7 +294662,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05474">
+            <rdf:Description rdf:about="#R_MAR05474">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105516"/>
@@ -294697,15 +294674,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01307c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02896e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01307c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02896e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01307e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02896c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01307e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02896c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05475" sboTerm="SBO:0000185" id="MAR05475" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05475" sboTerm="SBO:0000185" id="R_MAR05475" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -294714,7 +294691,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05475">
+            <rdf:Description rdf:about="#R_MAR05475">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105517"/>
@@ -294726,15 +294703,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01307c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02471e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01307c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02471e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01307e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02471c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01307e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02471c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05476" sboTerm="SBO:0000185" id="MAR05476" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05476" sboTerm="SBO:0000185" id="R_MAR05476" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -294743,7 +294720,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05476">
+            <rdf:Description rdf:about="#R_MAR05476">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105518"/>
@@ -294755,15 +294732,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01307c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03089e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01307c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03089e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01307e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03089c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01307e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03089c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05477" sboTerm="SBO:0000185" id="MAR05477" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05477" sboTerm="SBO:0000185" id="R_MAR05477" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -294772,7 +294749,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05477">
+            <rdf:Description rdf:about="#R_MAR05477">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105519"/>
@@ -294784,15 +294761,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01307c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02724e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01307c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02724e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01307e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02724c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01307e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02724c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05478" sboTerm="SBO:0000185" id="MAR05478" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05478" sboTerm="SBO:0000185" id="R_MAR05478" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -294801,7 +294778,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05478">
+            <rdf:Description rdf:about="#R_MAR05478">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105520"/>
@@ -294813,15 +294790,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01307c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03101e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01307c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03101e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01307e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03101c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01307e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03101c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05479" sboTerm="SBO:0000185" id="MAR05479" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05479" sboTerm="SBO:0000185" id="R_MAR05479" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -294830,7 +294807,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05479">
+            <rdf:Description rdf:about="#R_MAR05479">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105521"/>
@@ -294842,15 +294819,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01307c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01628e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01307c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01628e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01307e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01628c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01307e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01628c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05480" sboTerm="SBO:0000185" id="MAR05480" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05480" sboTerm="SBO:0000185" id="R_MAR05480" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -294859,7 +294836,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05480">
+            <rdf:Description rdf:about="#R_MAR05480">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105522"/>
@@ -294871,15 +294848,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01307c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02360e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01307c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02360e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01307e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02360c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01307e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02360c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05481" sboTerm="SBO:0000185" id="MAR05481" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05481" sboTerm="SBO:0000185" id="R_MAR05481" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -294888,7 +294865,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05481">
+            <rdf:Description rdf:about="#R_MAR05481">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105523"/>
@@ -294900,15 +294877,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01307c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02770e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01307c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02770e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01307e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02770c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01307e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02770c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05482" sboTerm="SBO:0000185" id="MAR05482" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05482" sboTerm="SBO:0000185" id="R_MAR05482" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -294917,7 +294894,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05482">
+            <rdf:Description rdf:about="#R_MAR05482">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105524"/>
@@ -294929,15 +294906,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01307c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01369e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01307c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01369e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01307e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01369c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01307e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01369c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05483" sboTerm="SBO:0000185" id="MAR05483" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05483" sboTerm="SBO:0000185" id="R_MAR05483" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -294946,7 +294923,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05483">
+            <rdf:Description rdf:about="#R_MAR05483">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105525"/>
@@ -294958,15 +294935,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01307c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03135e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01307c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03135e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01307e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03135c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01307e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03135c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05484" sboTerm="SBO:0000185" id="MAR05484" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05484" sboTerm="SBO:0000185" id="R_MAR05484" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -294975,7 +294952,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05484">
+            <rdf:Description rdf:about="#R_MAR05484">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105526"/>
@@ -294987,15 +294964,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01307c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02993e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01307c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02993e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01307e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02993c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01307e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02993c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05485" sboTerm="SBO:0000185" id="MAR05485" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05485" sboTerm="SBO:0000185" id="R_MAR05485" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -295004,7 +294981,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05485">
+            <rdf:Description rdf:about="#R_MAR05485">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105527"/>
@@ -295016,15 +294993,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01307c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02136e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01307c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02136e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01307e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02136c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01307e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02136c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05486" sboTerm="SBO:0000185" id="MAR05486" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05486" sboTerm="SBO:0000185" id="R_MAR05486" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -295033,7 +295010,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05486">
+            <rdf:Description rdf:about="#R_MAR05486">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105528"/>
@@ -295045,15 +295022,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01307c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02184e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01307c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02184e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01307e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02184c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01307e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02184c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05487" sboTerm="SBO:0000185" id="MAR05487" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05487" sboTerm="SBO:0000185" id="R_MAR05487" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -295062,7 +295039,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05487">
+            <rdf:Description rdf:about="#R_MAR05487">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/SERGLNexR"/>
@@ -295075,15 +295052,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01975c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02896e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01975c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02896e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01975e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02896c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01975e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02896c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05488" sboTerm="SBO:0000185" id="MAR05488" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05488" sboTerm="SBO:0000185" id="R_MAR05488" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -295092,7 +295069,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05488">
+            <rdf:Description rdf:about="#R_MAR05488">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105529"/>
@@ -295104,15 +295081,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01975c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02471e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01975c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02471e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01975e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02471c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01975e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02471c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05489" sboTerm="SBO:0000185" id="MAR05489" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05489" sboTerm="SBO:0000185" id="R_MAR05489" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -295121,7 +295098,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05489">
+            <rdf:Description rdf:about="#R_MAR05489">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105530"/>
@@ -295133,15 +295110,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01975c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03089e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01975c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03089e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01975e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03089c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01975e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03089c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05490" sboTerm="SBO:0000185" id="MAR05490" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05490" sboTerm="SBO:0000185" id="R_MAR05490" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -295150,7 +295127,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05490">
+            <rdf:Description rdf:about="#R_MAR05490">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105531"/>
@@ -295162,15 +295139,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01975c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02724e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01975c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02724e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01975e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02724c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01975e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02724c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05491" sboTerm="SBO:0000185" id="MAR05491" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05491" sboTerm="SBO:0000185" id="R_MAR05491" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -295179,7 +295156,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05491">
+            <rdf:Description rdf:about="#R_MAR05491">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105532"/>
@@ -295191,15 +295168,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01975c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03101e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01975c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03101e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01975e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03101c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01975e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03101c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05492" sboTerm="SBO:0000185" id="MAR05492" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05492" sboTerm="SBO:0000185" id="R_MAR05492" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -295208,7 +295185,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05492">
+            <rdf:Description rdf:about="#R_MAR05492">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CYSGLUexR"/>
@@ -295221,12 +295198,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01628c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01975e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01628c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01975e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01628e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01975c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01628e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01975c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -295237,7 +295214,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05493" sboTerm="SBO:0000185" id="MAR05493" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05493" sboTerm="SBO:0000185" id="R_MAR05493" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -295246,7 +295223,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05493">
+            <rdf:Description rdf:about="#R_MAR05493">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105533"/>
@@ -295258,15 +295235,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01975c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02360e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01975c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02360e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01975e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02360c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01975e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02360c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05494" sboTerm="SBO:0000185" id="MAR05494" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05494" sboTerm="SBO:0000185" id="R_MAR05494" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -295275,7 +295252,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05494">
+            <rdf:Description rdf:about="#R_MAR05494">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105534"/>
@@ -295287,15 +295264,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01975c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02770e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01975c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02770e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01975e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02770c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01975e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02770c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05495" sboTerm="SBO:0000185" id="MAR05495" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05495" sboTerm="SBO:0000185" id="R_MAR05495" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -295304,7 +295281,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05495">
+            <rdf:Description rdf:about="#R_MAR05495">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105535"/>
@@ -295316,15 +295293,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01369c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01975e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01369c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01975e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01369e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01975c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01369e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01975c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05496" sboTerm="SBO:0000185" id="MAR05496" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05496" sboTerm="SBO:0000185" id="R_MAR05496" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -295333,7 +295310,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05496">
+            <rdf:Description rdf:about="#R_MAR05496">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105536"/>
@@ -295345,15 +295322,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01975c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03135e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01975c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03135e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01975e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03135c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01975e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03135c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05497" sboTerm="SBO:0000185" id="MAR05497" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05497" sboTerm="SBO:0000185" id="R_MAR05497" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -295362,7 +295339,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05497">
+            <rdf:Description rdf:about="#R_MAR05497">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/THRGLNexR"/>
@@ -295375,15 +295352,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01975c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02993e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01975c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02993e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01975e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02993c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01975e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02993c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05498" sboTerm="SBO:0000185" id="MAR05498" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05498" sboTerm="SBO:0000185" id="R_MAR05498" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -295392,7 +295369,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05498">
+            <rdf:Description rdf:about="#R_MAR05498">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105537"/>
@@ -295404,15 +295381,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01975c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02136e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01975c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02136e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01975e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02136c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01975e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02136c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05499" sboTerm="SBO:0000185" id="MAR05499" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05499" sboTerm="SBO:0000185" id="R_MAR05499" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -295421,7 +295398,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05499">
+            <rdf:Description rdf:about="#R_MAR05499">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105538"/>
@@ -295433,15 +295410,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01975c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02184e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01975c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02184e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01975e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02184c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01975e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02184c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05500" sboTerm="SBO:0000185" id="MAR05500" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05500" sboTerm="SBO:0000185" id="R_MAR05500" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -295450,7 +295427,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05500">
+            <rdf:Description rdf:about="#R_MAR05500">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105539"/>
@@ -295462,15 +295439,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02471c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02896e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02471c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02896e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02471e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02896c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02471e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02896c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05501" sboTerm="SBO:0000185" id="MAR05501" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05501" sboTerm="SBO:0000185" id="R_MAR05501" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -295479,7 +295456,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05501">
+            <rdf:Description rdf:about="#R_MAR05501">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105540"/>
@@ -295491,15 +295468,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02896c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03089e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02896c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03089e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02896e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03089c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02896e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03089c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05502" sboTerm="SBO:0000185" id="MAR05502" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05502" sboTerm="SBO:0000185" id="R_MAR05502" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -295508,7 +295485,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05502">
+            <rdf:Description rdf:about="#R_MAR05502">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105541"/>
@@ -295520,15 +295497,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02724c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02896e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02724c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02896e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02724e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02896c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02724e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02896c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05503" sboTerm="SBO:0000185" id="MAR05503" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05503" sboTerm="SBO:0000185" id="R_MAR05503" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -295537,7 +295514,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05503">
+            <rdf:Description rdf:about="#R_MAR05503">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105542"/>
@@ -295549,15 +295526,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02896c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03101e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02896c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03101e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02896e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03101c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02896e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03101c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05504" sboTerm="SBO:0000185" id="MAR05504" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05504" sboTerm="SBO:0000185" id="R_MAR05504" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -295566,7 +295543,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05504">
+            <rdf:Description rdf:about="#R_MAR05504">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105543"/>
@@ -295578,15 +295555,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01628c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02896e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01628c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02896e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01628e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02896c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01628e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02896c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05505" sboTerm="SBO:0000185" id="MAR05505" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05505" sboTerm="SBO:0000185" id="R_MAR05505" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -295595,7 +295572,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05505">
+            <rdf:Description rdf:about="#R_MAR05505">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105544"/>
@@ -295607,15 +295584,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02360c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02896e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02360c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02896e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02360e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02896c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02360e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02896c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05506" sboTerm="SBO:0000185" id="MAR05506" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05506" sboTerm="SBO:0000185" id="R_MAR05506" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -295624,7 +295601,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05506">
+            <rdf:Description rdf:about="#R_MAR05506">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105545"/>
@@ -295636,15 +295613,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02770c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02896e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02770c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02896e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02770e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02896c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02770e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02896c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05507" sboTerm="SBO:0000185" id="MAR05507" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05507" sboTerm="SBO:0000185" id="R_MAR05507" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -295653,7 +295630,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05507">
+            <rdf:Description rdf:about="#R_MAR05507">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105546"/>
@@ -295665,15 +295642,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01369c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02896e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01369c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02896e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01369e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02896c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01369e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02896c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05508" sboTerm="SBO:0000185" id="MAR05508" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05508" sboTerm="SBO:0000185" id="R_MAR05508" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -295682,7 +295659,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05508">
+            <rdf:Description rdf:about="#R_MAR05508">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105547"/>
@@ -295694,15 +295671,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02896c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03135e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02896c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03135e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02896e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03135c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02896e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03135c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05509" sboTerm="SBO:0000185" id="MAR05509" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05509" sboTerm="SBO:0000185" id="R_MAR05509" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -295711,7 +295688,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05509">
+            <rdf:Description rdf:about="#R_MAR05509">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105548"/>
@@ -295723,15 +295700,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02896c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02993e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02896c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02993e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02896e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02993c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02896e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02993c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05510" sboTerm="SBO:0000185" id="MAR05510" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05510" sboTerm="SBO:0000185" id="R_MAR05510" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -295740,7 +295717,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05510">
+            <rdf:Description rdf:about="#R_MAR05510">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105549"/>
@@ -295752,15 +295729,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02136c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02896e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02136c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02896e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02136e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02896c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02136e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02896c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05511" sboTerm="SBO:0000185" id="MAR05511" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05511" sboTerm="SBO:0000185" id="R_MAR05511" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -295769,7 +295746,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05511">
+            <rdf:Description rdf:about="#R_MAR05511">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105550"/>
@@ -295781,15 +295758,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02184c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02896e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02184c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02896e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02184e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02896c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02184e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02896c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05512" sboTerm="SBO:0000185" id="MAR05512" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05512" sboTerm="SBO:0000185" id="R_MAR05512" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -295798,7 +295775,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05512">
+            <rdf:Description rdf:about="#R_MAR05512">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105551"/>
@@ -295810,15 +295787,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02471c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03089e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02471c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03089e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02471e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03089c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02471e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03089c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05513" sboTerm="SBO:0000185" id="MAR05513" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05513" sboTerm="SBO:0000185" id="R_MAR05513" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -295827,7 +295804,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05513">
+            <rdf:Description rdf:about="#R_MAR05513">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105552"/>
@@ -295839,15 +295816,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02471c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02724e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02471c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02724e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02471e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02724c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02471e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02724c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05514" sboTerm="SBO:0000185" id="MAR05514" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05514" sboTerm="SBO:0000185" id="R_MAR05514" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -295856,7 +295833,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05514">
+            <rdf:Description rdf:about="#R_MAR05514">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105553"/>
@@ -295868,15 +295845,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02471c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03101e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02471c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03101e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02471e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03101c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02471e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03101c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05515" sboTerm="SBO:0000185" id="MAR05515" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05515" sboTerm="SBO:0000185" id="R_MAR05515" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -295885,7 +295862,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05515">
+            <rdf:Description rdf:about="#R_MAR05515">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105554"/>
@@ -295897,15 +295874,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01628c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02471e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01628c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02471e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01628e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02471c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01628e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02471c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05516" sboTerm="SBO:0000185" id="MAR05516" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05516" sboTerm="SBO:0000185" id="R_MAR05516" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -295914,7 +295891,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05516">
+            <rdf:Description rdf:about="#R_MAR05516">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/METLEUex"/>
@@ -295927,15 +295904,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02360c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02471e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02360c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02471e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02360e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02471c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02360e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02471c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05517" sboTerm="SBO:0000185" id="MAR05517" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05517" sboTerm="SBO:0000185" id="R_MAR05517" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -295944,7 +295921,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05517">
+            <rdf:Description rdf:about="#R_MAR05517">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105555"/>
@@ -295956,15 +295933,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02471c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02770e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02471c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02770e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02471e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02770c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02471e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02770c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05518" sboTerm="SBO:0000185" id="MAR05518" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05518" sboTerm="SBO:0000185" id="R_MAR05518" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -295973,7 +295950,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05518">
+            <rdf:Description rdf:about="#R_MAR05518">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105556"/>
@@ -295985,15 +295962,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01369c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02471e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01369c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02471e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01369e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02471c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01369e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02471c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05519" sboTerm="SBO:0000185" id="MAR05519" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05519" sboTerm="SBO:0000185" id="R_MAR05519" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -296002,7 +295979,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05519">
+            <rdf:Description rdf:about="#R_MAR05519">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105557"/>
@@ -296014,15 +295991,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02471c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03135e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02471c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03135e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02471e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03135c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02471e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03135c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05520" sboTerm="SBO:0000185" id="MAR05520" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05520" sboTerm="SBO:0000185" id="R_MAR05520" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -296031,7 +296008,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05520">
+            <rdf:Description rdf:about="#R_MAR05520">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105558"/>
@@ -296043,15 +296020,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02471c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02993e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02471c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02993e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02471e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02993c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02471e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02993c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05521" sboTerm="SBO:0000185" id="MAR05521" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05521" sboTerm="SBO:0000185" id="R_MAR05521" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -296060,7 +296037,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05521">
+            <rdf:Description rdf:about="#R_MAR05521">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105559"/>
@@ -296072,15 +296049,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02136c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02471e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02136c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02471e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02136e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02471c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02136e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02471c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05522" sboTerm="SBO:0000185" id="MAR05522" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05522" sboTerm="SBO:0000185" id="R_MAR05522" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -296089,7 +296066,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05522">
+            <rdf:Description rdf:about="#R_MAR05522">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105560"/>
@@ -296101,15 +296078,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02184c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02471e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02184c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02471e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02184e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02471c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02184e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02471c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05523" sboTerm="SBO:0000185" id="MAR05523" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05523" sboTerm="SBO:0000185" id="R_MAR05523" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -296118,7 +296095,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05523">
+            <rdf:Description rdf:about="#R_MAR05523">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105561"/>
@@ -296130,15 +296107,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02724c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03089e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02724c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03089e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02724e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03089c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02724e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03089c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05524" sboTerm="SBO:0000185" id="MAR05524" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05524" sboTerm="SBO:0000185" id="R_MAR05524" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -296147,7 +296124,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05524">
+            <rdf:Description rdf:about="#R_MAR05524">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105562"/>
@@ -296159,15 +296136,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03089c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03101e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03089c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03101e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03089e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03101c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03089e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03101c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05525" sboTerm="SBO:0000185" id="MAR05525" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05525" sboTerm="SBO:0000185" id="R_MAR05525" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -296176,7 +296153,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05525">
+            <rdf:Description rdf:about="#R_MAR05525">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105563"/>
@@ -296188,15 +296165,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01628c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03089e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01628c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03089e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01628e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03089c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01628e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03089c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05526" sboTerm="SBO:0000185" id="MAR05526" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05526" sboTerm="SBO:0000185" id="R_MAR05526" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -296205,7 +296182,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05526">
+            <rdf:Description rdf:about="#R_MAR05526">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105564"/>
@@ -296217,15 +296194,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02360c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03089e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02360c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03089e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02360e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03089c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02360e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03089c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05527" sboTerm="SBO:0000185" id="MAR05527" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05527" sboTerm="SBO:0000185" id="R_MAR05527" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -296234,7 +296211,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05527">
+            <rdf:Description rdf:about="#R_MAR05527">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105565"/>
@@ -296246,15 +296223,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02770c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03089e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02770c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03089e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02770e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03089c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02770e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03089c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05528" sboTerm="SBO:0000185" id="MAR05528" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05528" sboTerm="SBO:0000185" id="R_MAR05528" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -296263,7 +296240,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05528">
+            <rdf:Description rdf:about="#R_MAR05528">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105566"/>
@@ -296275,15 +296252,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01369c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03089e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01369c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03089e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01369e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03089c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01369e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03089c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05529" sboTerm="SBO:0000185" id="MAR05529" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05529" sboTerm="SBO:0000185" id="R_MAR05529" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -296292,7 +296269,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05529">
+            <rdf:Description rdf:about="#R_MAR05529">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105567"/>
@@ -296304,15 +296281,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03089c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03135e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03089c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03135e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03089e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03135c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03089e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03135c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05530" sboTerm="SBO:0000185" id="MAR05530" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05530" sboTerm="SBO:0000185" id="R_MAR05530" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -296321,7 +296298,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05530">
+            <rdf:Description rdf:about="#R_MAR05530">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105568"/>
@@ -296333,15 +296310,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02993c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03089e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02993c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03089e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02993e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03089c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02993e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03089c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05531" sboTerm="SBO:0000185" id="MAR05531" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05531" sboTerm="SBO:0000185" id="R_MAR05531" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -296350,7 +296327,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05531">
+            <rdf:Description rdf:about="#R_MAR05531">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105569"/>
@@ -296362,15 +296339,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02136c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03089e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02136c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03089e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02136e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03089c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02136e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03089c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05532" sboTerm="SBO:0000185" id="MAR05532" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05532" sboTerm="SBO:0000185" id="R_MAR05532" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -296379,7 +296356,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05532">
+            <rdf:Description rdf:about="#R_MAR05532">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105570"/>
@@ -296391,15 +296368,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02184c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03089e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02184c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03089e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02184e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03089c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02184e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03089c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05533" sboTerm="SBO:0000185" id="MAR05533" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05533" sboTerm="SBO:0000185" id="R_MAR05533" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -296408,7 +296385,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05533">
+            <rdf:Description rdf:about="#R_MAR05533">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR104997"/>
@@ -296421,15 +296398,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02724c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03101e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02724c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03101e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02724e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03101c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02724e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03101c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05534" sboTerm="SBO:0000185" id="MAR05534" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05534" sboTerm="SBO:0000185" id="R_MAR05534" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -296438,7 +296415,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05534">
+            <rdf:Description rdf:about="#R_MAR05534">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR97006"/>
@@ -296451,15 +296428,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01628c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02724e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01628c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02724e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01628e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02724c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01628e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02724c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05535" sboTerm="SBO:0000185" id="MAR05535" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05535" sboTerm="SBO:0000185" id="R_MAR05535" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -296468,7 +296445,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05535">
+            <rdf:Description rdf:about="#R_MAR05535">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR101052"/>
@@ -296481,15 +296458,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02360c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02724e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02360c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02724e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02360e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02724c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02360e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02724c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05536" sboTerm="SBO:0000185" id="MAR05536" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05536" sboTerm="SBO:0000185" id="R_MAR05536" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -296498,7 +296475,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05536">
+            <rdf:Description rdf:about="#R_MAR05536">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105571"/>
@@ -296510,15 +296487,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02724c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02770e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02724c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02770e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02724e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02770c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02724e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02770c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05537" sboTerm="SBO:0000185" id="MAR05537" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05537" sboTerm="SBO:0000185" id="R_MAR05537" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -296527,7 +296504,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05537">
+            <rdf:Description rdf:about="#R_MAR05537">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR96058"/>
@@ -296540,15 +296517,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01369c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02724e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01369c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02724e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01369e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02724c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01369e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02724c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05538" sboTerm="SBO:0000185" id="MAR05538" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05538" sboTerm="SBO:0000185" id="R_MAR05538" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -296557,7 +296534,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05538">
+            <rdf:Description rdf:about="#R_MAR05538">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105185"/>
@@ -296570,15 +296547,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02724c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03135e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02724c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03135e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02724e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03135c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02724e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03135c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05539" sboTerm="SBO:0000185" id="MAR05539" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05539" sboTerm="SBO:0000185" id="R_MAR05539" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -296587,7 +296564,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05539">
+            <rdf:Description rdf:about="#R_MAR05539">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR104844"/>
@@ -296600,15 +296577,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02724c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02993e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02724c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02993e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02724e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02993c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02724e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02993c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05540" sboTerm="SBO:0000185" id="MAR05540" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05540" sboTerm="SBO:0000185" id="R_MAR05540" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -296617,7 +296594,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05540">
+            <rdf:Description rdf:about="#R_MAR05540">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105572"/>
@@ -296629,15 +296606,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02136c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02724e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02136c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02724e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02136e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02724c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02136e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02724c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05541" sboTerm="SBO:0000185" id="MAR05541" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05541" sboTerm="SBO:0000185" id="R_MAR05541" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -296646,7 +296623,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05541">
+            <rdf:Description rdf:about="#R_MAR05541">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR100819"/>
@@ -296659,15 +296636,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02184c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02724e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02184c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02724e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02184e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02724c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02184e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02724c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05542" sboTerm="SBO:0000185" id="MAR05542" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05542" sboTerm="SBO:0000185" id="R_MAR05542" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -296676,7 +296653,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05542">
+            <rdf:Description rdf:about="#R_MAR05542">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105573"/>
@@ -296688,15 +296665,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01628c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03101e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01628c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03101e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01628e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03101c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01628e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03101c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05543" sboTerm="SBO:0000185" id="MAR05543" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05543" sboTerm="SBO:0000185" id="R_MAR05543" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -296705,7 +296682,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05543">
+            <rdf:Description rdf:about="#R_MAR05543">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105574"/>
@@ -296717,15 +296694,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02360c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03101e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02360c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03101e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02360e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03101c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02360e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03101c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05544" sboTerm="SBO:0000185" id="MAR05544" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05544" sboTerm="SBO:0000185" id="R_MAR05544" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -296734,7 +296711,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05544">
+            <rdf:Description rdf:about="#R_MAR05544">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105575"/>
@@ -296746,15 +296723,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02770c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03101e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02770c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03101e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02770e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03101c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02770e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03101c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05545" sboTerm="SBO:0000185" id="MAR05545" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05545" sboTerm="SBO:0000185" id="R_MAR05545" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -296763,7 +296740,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05545">
+            <rdf:Description rdf:about="#R_MAR05545">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105576"/>
@@ -296775,15 +296752,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01369c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03101e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01369c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03101e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01369e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03101c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01369e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03101c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05546" sboTerm="SBO:0000185" id="MAR05546" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05546" sboTerm="SBO:0000185" id="R_MAR05546" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -296792,7 +296769,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05546">
+            <rdf:Description rdf:about="#R_MAR05546">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105577"/>
@@ -296804,15 +296781,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03101c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03135e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03101c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03135e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03101e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03135c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03101e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03135c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05547" sboTerm="SBO:0000185" id="MAR05547" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05547" sboTerm="SBO:0000185" id="R_MAR05547" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -296821,7 +296798,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05547">
+            <rdf:Description rdf:about="#R_MAR05547">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105578"/>
@@ -296833,12 +296810,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02993c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03101e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02993c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03101e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02993e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03101c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02993e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03101c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -296846,7 +296823,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05548" sboTerm="SBO:0000185" id="MAR05548" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05548" sboTerm="SBO:0000185" id="R_MAR05548" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -296855,7 +296832,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05548">
+            <rdf:Description rdf:about="#R_MAR05548">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105579"/>
@@ -296867,15 +296844,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02136c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03101e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02136c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03101e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02136e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03101c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02136e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03101c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05549" sboTerm="SBO:0000185" id="MAR05549" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05549" sboTerm="SBO:0000185" id="R_MAR05549" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -296884,7 +296861,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05549">
+            <rdf:Description rdf:about="#R_MAR05549">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105580"/>
@@ -296896,15 +296873,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02184c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03101e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02184c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03101e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02184e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03101c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02184e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03101c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05550" sboTerm="SBO:0000185" id="MAR05550" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05550" sboTerm="SBO:0000185" id="R_MAR05550" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -296913,7 +296890,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05550">
+            <rdf:Description rdf:about="#R_MAR05550">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105581"/>
@@ -296925,12 +296902,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01628e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02360c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01628e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02360c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01628c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02360e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01628c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02360e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:and>
@@ -296938,7 +296915,7 @@
           </fbc:and>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05551" sboTerm="SBO:0000185" id="MAR05551" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05551" sboTerm="SBO:0000185" id="R_MAR05551" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -296947,7 +296924,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05551">
+            <rdf:Description rdf:about="#R_MAR05551">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105582"/>
@@ -296959,15 +296936,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01628c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02770e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01628c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02770e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01628e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02770c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01628e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02770c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05552" sboTerm="SBO:0000185" id="MAR05552" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05552" sboTerm="SBO:0000185" id="R_MAR05552" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -296976,7 +296953,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05552">
+            <rdf:Description rdf:about="#R_MAR05552">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105583"/>
@@ -296988,15 +296965,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01369c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01628e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01369c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01628e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01369e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01628c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01369e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01628c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05553" sboTerm="SBO:0000185" id="MAR05553" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05553" sboTerm="SBO:0000185" id="R_MAR05553" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -297005,7 +296982,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05553">
+            <rdf:Description rdf:about="#R_MAR05553">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105584"/>
@@ -297017,15 +296994,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01628c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03135e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01628c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03135e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01628e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03135c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01628e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03135c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05554" sboTerm="SBO:0000185" id="MAR05554" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05554" sboTerm="SBO:0000185" id="R_MAR05554" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -297034,7 +297011,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05554">
+            <rdf:Description rdf:about="#R_MAR05554">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105585"/>
@@ -297046,15 +297023,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01628c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02993e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01628c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02993e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01628e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02993c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01628e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02993c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05555" sboTerm="SBO:0000185" id="MAR05555" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05555" sboTerm="SBO:0000185" id="R_MAR05555" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -297063,7 +297040,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05555">
+            <rdf:Description rdf:about="#R_MAR05555">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105586"/>
@@ -297075,15 +297052,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01628c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02136e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01628c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02136e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01628e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02136c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01628e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02136c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05556" sboTerm="SBO:0000185" id="MAR05556" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05556" sboTerm="SBO:0000185" id="R_MAR05556" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -297092,7 +297069,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05556">
+            <rdf:Description rdf:about="#R_MAR05556">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105587"/>
@@ -297104,15 +297081,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01628c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02184e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01628c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02184e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01628e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02184c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01628e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02184c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05557" sboTerm="SBO:0000185" id="MAR05557" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05557" sboTerm="SBO:0000185" id="R_MAR05557" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -297121,7 +297098,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05557">
+            <rdf:Description rdf:about="#R_MAR05557">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105588"/>
@@ -297133,15 +297110,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02360c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02770e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02360c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02770e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02360e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02770c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02360e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02770c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05558" sboTerm="SBO:0000185" id="MAR05558" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05558" sboTerm="SBO:0000185" id="R_MAR05558" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -297150,7 +297127,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05558">
+            <rdf:Description rdf:about="#R_MAR05558">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105589"/>
@@ -297162,15 +297139,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01369c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02360e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01369c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02360e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01369e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02360c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01369e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02360c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05559" sboTerm="SBO:0000185" id="MAR05559" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05559" sboTerm="SBO:0000185" id="R_MAR05559" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -297179,7 +297156,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05559">
+            <rdf:Description rdf:about="#R_MAR05559">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105184"/>
@@ -297192,15 +297169,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02360c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03135e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02360c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03135e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02360e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03135c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02360e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03135c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05560" sboTerm="SBO:0000185" id="MAR05560" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05560" sboTerm="SBO:0000185" id="R_MAR05560" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -297209,7 +297186,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05560">
+            <rdf:Description rdf:about="#R_MAR05560">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105590"/>
@@ -297221,15 +297198,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02360c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02993e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02360c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02993e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02360e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02993c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02360e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02993c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05561" sboTerm="SBO:0000185" id="MAR05561" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05561" sboTerm="SBO:0000185" id="R_MAR05561" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -297238,7 +297215,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05561">
+            <rdf:Description rdf:about="#R_MAR05561">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105591"/>
@@ -297250,15 +297227,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02136c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02360e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02136c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02360e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02136e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02360c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02136e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02360c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05562" sboTerm="SBO:0000185" id="MAR05562" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05562" sboTerm="SBO:0000185" id="R_MAR05562" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -297267,7 +297244,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05562">
+            <rdf:Description rdf:about="#R_MAR05562">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR100817"/>
@@ -297280,15 +297257,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02184c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02360e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02184c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02360e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02184e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02360c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02184e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02360c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05563" sboTerm="SBO:0000185" id="MAR05563" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05563" sboTerm="SBO:0000185" id="R_MAR05563" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -297297,7 +297274,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05563">
+            <rdf:Description rdf:about="#R_MAR05563">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105592"/>
@@ -297309,15 +297286,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01369c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02770e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01369c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02770e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01369e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02770c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01369e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02770c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05564" sboTerm="SBO:0000185" id="MAR05564" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05564" sboTerm="SBO:0000185" id="R_MAR05564" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -297326,7 +297303,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05564">
+            <rdf:Description rdf:about="#R_MAR05564">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105593"/>
@@ -297338,15 +297315,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02770c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03135e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02770c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03135e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02770e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03135c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02770e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03135c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05565" sboTerm="SBO:0000185" id="MAR05565" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05565" sboTerm="SBO:0000185" id="R_MAR05565" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -297355,7 +297332,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05565">
+            <rdf:Description rdf:about="#R_MAR05565">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105594"/>
@@ -297367,15 +297344,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02770c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02993e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02770c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02993e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02770e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02993c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02770e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02993c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05566" sboTerm="SBO:0000185" id="MAR05566" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05566" sboTerm="SBO:0000185" id="R_MAR05566" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -297384,7 +297361,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05566">
+            <rdf:Description rdf:about="#R_MAR05566">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105595"/>
@@ -297396,15 +297373,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02136c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02770e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02136c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02770e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02136e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02770c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02136e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02770c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05567" sboTerm="SBO:0000185" id="MAR05567" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05567" sboTerm="SBO:0000185" id="R_MAR05567" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -297413,7 +297390,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05567">
+            <rdf:Description rdf:about="#R_MAR05567">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105596"/>
@@ -297425,15 +297402,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02184c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02770e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02184c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02770e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02184e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02770c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02184e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02770c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05568" sboTerm="SBO:0000185" id="MAR05568" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05568" sboTerm="SBO:0000185" id="R_MAR05568" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -297442,7 +297419,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05568">
+            <rdf:Description rdf:about="#R_MAR05568">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105597"/>
@@ -297454,15 +297431,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01369c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03135e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01369c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03135e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01369e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03135c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01369e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03135c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05569" sboTerm="SBO:0000185" id="MAR05569" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05569" sboTerm="SBO:0000185" id="R_MAR05569" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -297471,7 +297448,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05569">
+            <rdf:Description rdf:about="#R_MAR05569">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105598"/>
@@ -297483,15 +297460,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01369c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02993e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01369c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02993e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01369e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02993c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01369e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02993c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05570" sboTerm="SBO:0000185" id="MAR05570" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05570" sboTerm="SBO:0000185" id="R_MAR05570" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -297500,7 +297477,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05570">
+            <rdf:Description rdf:about="#R_MAR05570">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105599"/>
@@ -297512,15 +297489,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01369c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02136e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01369c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02136e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01369e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02136c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01369e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02136c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05571" sboTerm="SBO:0000185" id="MAR05571" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05571" sboTerm="SBO:0000185" id="R_MAR05571" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -297529,7 +297506,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05571">
+            <rdf:Description rdf:about="#R_MAR05571">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105600"/>
@@ -297541,15 +297518,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01369c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02184e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01369c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02184e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01369e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02184c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01369e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02184c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05572" sboTerm="SBO:0000185" id="MAR05572" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05572" sboTerm="SBO:0000185" id="R_MAR05572" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -297558,7 +297535,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05572">
+            <rdf:Description rdf:about="#R_MAR05572">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105601"/>
@@ -297570,15 +297547,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02993c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03135e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02993c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03135e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02993e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03135c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02993e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03135c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05573" sboTerm="SBO:0000185" id="MAR05573" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05573" sboTerm="SBO:0000185" id="R_MAR05573" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -297587,7 +297564,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05573">
+            <rdf:Description rdf:about="#R_MAR05573">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105602"/>
@@ -297599,15 +297576,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02136c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03135e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02136c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03135e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02136e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03135c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02136e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03135c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05574" sboTerm="SBO:0000185" id="MAR05574" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05574" sboTerm="SBO:0000185" id="R_MAR05574" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -297616,7 +297593,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05574">
+            <rdf:Description rdf:about="#R_MAR05574">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105603"/>
@@ -297628,15 +297605,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02184c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03135e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02184c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03135e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02184e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03135c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02184e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03135c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05575" sboTerm="SBO:0000185" id="MAR05575" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05575" sboTerm="SBO:0000185" id="R_MAR05575" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -297645,7 +297622,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05575">
+            <rdf:Description rdf:about="#R_MAR05575">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105604"/>
@@ -297657,15 +297634,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02136c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02993e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02136c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02993e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02136e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02993c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02136e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02993c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05576" sboTerm="SBO:0000185" id="MAR05576" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05576" sboTerm="SBO:0000185" id="R_MAR05576" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -297674,7 +297651,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05576">
+            <rdf:Description rdf:about="#R_MAR05576">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105605"/>
@@ -297686,15 +297663,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02184c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02993e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02184c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02993e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02184e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02993c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02184e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02993c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05577" sboTerm="SBO:0000185" id="MAR05577" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05577" sboTerm="SBO:0000185" id="R_MAR05577" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -297703,7 +297680,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05577">
+            <rdf:Description rdf:about="#R_MAR05577">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105606"/>
@@ -297715,15 +297692,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02136c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02184e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02136c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02184e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02136e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02184c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02136e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02184c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05578" sboTerm="SBO:0000185" id="MAR05578" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05578" sboTerm="SBO:0000185" id="R_MAR05578" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -297732,7 +297709,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05578">
+            <rdf:Description rdf:about="#R_MAR05578">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ARGLYSex"/>
@@ -297744,12 +297721,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01365c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02426e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01365c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02426e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01365e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02426c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01365e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02426c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -297758,7 +297735,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05579" sboTerm="SBO:0000185" id="MAR05579" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05579" sboTerm="SBO:0000185" id="R_MAR05579" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -297767,7 +297744,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05579">
+            <rdf:Description rdf:about="#R_MAR05579">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105607"/>
@@ -297778,12 +297755,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02426c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02658e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02426c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02658e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02426e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02658c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02426e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02658c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -297792,7 +297769,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05580" sboTerm="SBO:0000185" id="MAR05580" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05580" sboTerm="SBO:0000185" id="R_MAR05580" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -297801,7 +297778,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05580">
+            <rdf:Description rdf:about="#R_MAR05580">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105608"/>
@@ -297812,12 +297789,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02125c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02426e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02125c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02426e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02125e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02426c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02125e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02426c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -297826,7 +297803,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05581" sboTerm="SBO:0000185" id="MAR05581" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05581" sboTerm="SBO:0000185" id="R_MAR05581" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -297835,7 +297812,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05581">
+            <rdf:Description rdf:about="#R_MAR05581">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105609"/>
@@ -297846,12 +297823,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01588c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02426e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01588c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02426e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01588e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02426c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01588e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02426c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -297860,7 +297837,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05582" sboTerm="SBO:0000185" id="MAR05582" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05582" sboTerm="SBO:0000185" id="R_MAR05582" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -297869,7 +297846,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05582">
+            <rdf:Description rdf:about="#R_MAR05582">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR95946"/>
@@ -297880,12 +297857,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01365c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02658e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01365c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02658e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01365e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02658c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01365e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02658c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -297894,7 +297871,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05583" sboTerm="SBO:0000185" id="MAR05583" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05583" sboTerm="SBO:0000185" id="R_MAR05583" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -297903,7 +297880,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05583">
+            <rdf:Description rdf:about="#R_MAR05583">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105610"/>
@@ -297914,12 +297891,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01365c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02125e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01365c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02125e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01365e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02125c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01365e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02125c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -297928,7 +297905,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05584" sboTerm="SBO:0000185" id="MAR05584" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05584" sboTerm="SBO:0000185" id="R_MAR05584" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -297937,7 +297914,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05584">
+            <rdf:Description rdf:about="#R_MAR05584">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105611"/>
@@ -297948,12 +297925,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01365c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01588e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01365c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01588e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01365e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01588c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01365e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01588c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -297962,7 +297939,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05585" sboTerm="SBO:0000185" id="MAR05585" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05585" sboTerm="SBO:0000185" id="R_MAR05585" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -297971,7 +297948,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05585">
+            <rdf:Description rdf:about="#R_MAR05585">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105612"/>
@@ -297982,12 +297959,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02125c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02658e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02125c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02658e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02125e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02658c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02125e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02658c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -297996,7 +297973,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05586" sboTerm="SBO:0000185" id="MAR05586" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05586" sboTerm="SBO:0000185" id="R_MAR05586" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -298005,7 +297982,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05586">
+            <rdf:Description rdf:about="#R_MAR05586">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105613"/>
@@ -298016,12 +297993,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01588c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02125e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01588c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02125e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01588e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02125c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01588e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02125c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -298030,7 +298007,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05587" sboTerm="SBO:0000185" id="MAR05587" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05587" sboTerm="SBO:0000185" id="R_MAR05587" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -298039,7 +298016,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05587">
+            <rdf:Description rdf:about="#R_MAR05587">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105614"/>
@@ -298050,14 +298027,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01307c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01986e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01307c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01307e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01986c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01307e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -298066,7 +298043,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05588" sboTerm="SBO:0000185" id="MAR05588" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05588" sboTerm="SBO:0000185" id="R_MAR05588" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -298075,7 +298052,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05588">
+            <rdf:Description rdf:about="#R_MAR05588">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105615"/>
@@ -298086,14 +298063,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01975c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01986e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01975c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01975e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01986c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01975e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -298102,7 +298079,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05589" sboTerm="SBO:0000185" id="MAR05589" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05589" sboTerm="SBO:0000185" id="R_MAR05589" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -298111,7 +298088,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05589">
+            <rdf:Description rdf:about="#R_MAR05589">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105616"/>
@@ -298122,14 +298099,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01986e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02896c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02896c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01986c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02896e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02896e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -298138,7 +298115,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05590" sboTerm="SBO:0000185" id="MAR05590" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05590" sboTerm="SBO:0000185" id="R_MAR05590" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -298147,7 +298124,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05590">
+            <rdf:Description rdf:about="#R_MAR05590">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105617"/>
@@ -298158,14 +298135,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01986e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02471c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02471c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01986c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02471e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02471e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -298174,7 +298151,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05591" sboTerm="SBO:0000185" id="MAR05591" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05591" sboTerm="SBO:0000185" id="R_MAR05591" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -298183,7 +298160,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05591">
+            <rdf:Description rdf:about="#R_MAR05591">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105618"/>
@@ -298194,14 +298171,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01986e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03089c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03089c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01986c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03089e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03089e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -298210,7 +298187,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05592" sboTerm="SBO:0000185" id="MAR05592" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05592" sboTerm="SBO:0000185" id="R_MAR05592" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -298219,7 +298196,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05592">
+            <rdf:Description rdf:about="#R_MAR05592">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105619"/>
@@ -298230,14 +298207,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01986e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02724c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02724c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01986c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02724e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02724e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -298246,7 +298223,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05593" sboTerm="SBO:0000185" id="MAR05593" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05593" sboTerm="SBO:0000185" id="R_MAR05593" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -298255,7 +298232,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05593">
+            <rdf:Description rdf:about="#R_MAR05593">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105620"/>
@@ -298266,14 +298243,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01986e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03101c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03101c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01986c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03101e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03101e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -298282,7 +298259,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05594" sboTerm="SBO:0000185" id="MAR05594" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05594" sboTerm="SBO:0000185" id="R_MAR05594" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -298291,7 +298268,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05594">
+            <rdf:Description rdf:about="#R_MAR05594">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105621"/>
@@ -298302,14 +298279,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01628c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01986e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01628c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01628e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01986c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01628e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -298318,7 +298295,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05595" sboTerm="SBO:0000185" id="MAR05595" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05595" sboTerm="SBO:0000185" id="R_MAR05595" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -298327,7 +298304,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05595">
+            <rdf:Description rdf:about="#R_MAR05595">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105622"/>
@@ -298338,14 +298315,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01986e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02360c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02360c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01986c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02360e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02360e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -298354,7 +298331,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05596" sboTerm="SBO:0000185" id="MAR05596" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05596" sboTerm="SBO:0000185" id="R_MAR05596" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -298363,7 +298340,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05596">
+            <rdf:Description rdf:about="#R_MAR05596">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105623"/>
@@ -298374,14 +298351,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01986e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02770c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02770c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01986c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02770e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02770e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -298390,7 +298367,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05597" sboTerm="SBO:0000185" id="MAR05597" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05597" sboTerm="SBO:0000185" id="R_MAR05597" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -298399,7 +298376,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05597">
+            <rdf:Description rdf:about="#R_MAR05597">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105624"/>
@@ -298410,14 +298387,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01369c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01986e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01369c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01369e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01986c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01369e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -298426,7 +298403,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05598" sboTerm="SBO:0000185" id="MAR05598" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05598" sboTerm="SBO:0000185" id="R_MAR05598" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -298435,7 +298412,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05598">
+            <rdf:Description rdf:about="#R_MAR05598">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105625"/>
@@ -298446,14 +298423,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01986e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03135c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03135c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01986c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03135e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03135e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -298462,7 +298439,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05599" sboTerm="SBO:0000185" id="MAR05599" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05599" sboTerm="SBO:0000185" id="R_MAR05599" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -298471,7 +298448,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05599">
+            <rdf:Description rdf:about="#R_MAR05599">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105626"/>
@@ -298482,14 +298459,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01986e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02993c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02993c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01986c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02993e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02993e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -298498,7 +298475,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05600" sboTerm="SBO:0000185" id="MAR05600" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05600" sboTerm="SBO:0000185" id="R_MAR05600" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -298507,7 +298484,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05600">
+            <rdf:Description rdf:about="#R_MAR05600">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105627"/>
@@ -298518,14 +298495,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01986e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02136c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02136c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01986c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02136e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02136e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -298534,7 +298511,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05601" sboTerm="SBO:0000185" id="MAR05601" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05601" sboTerm="SBO:0000185" id="R_MAR05601" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -298543,7 +298520,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05601">
+            <rdf:Description rdf:about="#R_MAR05601">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105628"/>
@@ -298554,14 +298531,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01986e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02184c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02184c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01986c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02184e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02184e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -298570,7 +298547,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05602" sboTerm="SBO:0000185" id="MAR05602" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05602" sboTerm="SBO:0000185" id="R_MAR05602" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -298579,7 +298556,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05602">
+            <rdf:Description rdf:about="#R_MAR05602">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105629"/>
@@ -298590,14 +298567,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01307e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01986c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01307e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01307c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01986e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01307c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -298606,7 +298583,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05603" sboTerm="SBO:0000185" id="MAR05603" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05603" sboTerm="SBO:0000185" id="R_MAR05603" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -298615,7 +298592,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05603">
+            <rdf:Description rdf:about="#R_MAR05603">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ALAGLNNaEx"/>
@@ -298627,14 +298604,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01307e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01975c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01307e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01975c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01307c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01975e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01307c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01975e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -298644,7 +298621,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05604" sboTerm="SBO:0000185" id="MAR05604" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05604" sboTerm="SBO:0000185" id="R_MAR05604" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -298653,7 +298630,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05604">
+            <rdf:Description rdf:about="#R_MAR05604">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ALASERNaEx"/>
@@ -298665,14 +298642,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01307e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02896c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01307e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02896c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01307c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02896e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01307c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02896e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -298682,7 +298659,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05605" sboTerm="SBO:0000185" id="MAR05605" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05605" sboTerm="SBO:0000185" id="R_MAR05605" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -298691,7 +298668,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05605">
+            <rdf:Description rdf:about="#R_MAR05605">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105630"/>
@@ -298702,14 +298679,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01307e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02471c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01307e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02471c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01307c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02471e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01307c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02471e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -298718,7 +298695,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05606" sboTerm="SBO:0000185" id="MAR05606" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05606" sboTerm="SBO:0000185" id="R_MAR05606" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -298727,7 +298704,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05606">
+            <rdf:Description rdf:about="#R_MAR05606">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105631"/>
@@ -298738,14 +298715,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01307e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03089c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01307e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03089c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01307c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03089e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01307c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03089e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -298754,7 +298731,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05607" sboTerm="SBO:0000185" id="MAR05607" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05607" sboTerm="SBO:0000185" id="R_MAR05607" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -298763,7 +298740,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05607">
+            <rdf:Description rdf:about="#R_MAR05607">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105632"/>
@@ -298774,14 +298751,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01307e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02724c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01307e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02724c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01307c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02724e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01307c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02724e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -298790,7 +298767,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05608" sboTerm="SBO:0000185" id="MAR05608" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05608" sboTerm="SBO:0000185" id="R_MAR05608" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -298799,7 +298776,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05608">
+            <rdf:Description rdf:about="#R_MAR05608">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105633"/>
@@ -298810,14 +298787,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01307e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03101c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01307e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03101c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01307c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03101e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01307c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03101e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -298826,7 +298803,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05609" sboTerm="SBO:0000185" id="MAR05609" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05609" sboTerm="SBO:0000185" id="R_MAR05609" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -298835,7 +298812,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05609">
+            <rdf:Description rdf:about="#R_MAR05609">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ALACYSNaEx"/>
@@ -298847,14 +298824,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01307e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01628c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01307e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01628c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01307c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01628e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01307c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01628e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -298864,7 +298841,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05610" sboTerm="SBO:0000185" id="MAR05610" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05610" sboTerm="SBO:0000185" id="R_MAR05610" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -298873,7 +298850,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05610">
+            <rdf:Description rdf:about="#R_MAR05610">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105634"/>
@@ -298884,14 +298861,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01307e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02360c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01307e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02360c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01307c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02360e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01307c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02360e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -298900,7 +298877,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05611" sboTerm="SBO:0000185" id="MAR05611" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05611" sboTerm="SBO:0000185" id="R_MAR05611" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -298909,7 +298886,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05611">
+            <rdf:Description rdf:about="#R_MAR05611">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105635"/>
@@ -298920,14 +298897,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01307e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02770c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01307e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02770c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01307c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02770e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01307c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02770e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -298936,7 +298913,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05612" sboTerm="SBO:0000185" id="MAR05612" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05612" sboTerm="SBO:0000185" id="R_MAR05612" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -298945,7 +298922,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05612">
+            <rdf:Description rdf:about="#R_MAR05612">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ALAASNNaEx"/>
@@ -298957,14 +298934,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01307e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01369c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01307e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01369c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01307c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01369e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01307c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01369e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -298974,7 +298951,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05613" sboTerm="SBO:0000185" id="MAR05613" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05613" sboTerm="SBO:0000185" id="R_MAR05613" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -298983,7 +298960,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05613">
+            <rdf:Description rdf:about="#R_MAR05613">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105636"/>
@@ -298994,14 +298971,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01307e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03135c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01307e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03135c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01307c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03135e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01307c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03135e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -299010,7 +298987,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05614" sboTerm="SBO:0000185" id="MAR05614" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05614" sboTerm="SBO:0000185" id="R_MAR05614" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -299019,7 +298996,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05614">
+            <rdf:Description rdf:about="#R_MAR05614">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ALATHRNaEx"/>
@@ -299031,14 +299008,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01307e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02993c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01307e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02993c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01307c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02993e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01307c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02993e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -299048,7 +299025,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05615" sboTerm="SBO:0000185" id="MAR05615" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05615" sboTerm="SBO:0000185" id="R_MAR05615" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -299057,7 +299034,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05615">
+            <rdf:Description rdf:about="#R_MAR05615">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105637"/>
@@ -299068,14 +299045,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01307e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02136c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01307e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02136c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01307c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02136e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01307c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02136e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -299084,7 +299061,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05616" sboTerm="SBO:0000185" id="MAR05616" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05616" sboTerm="SBO:0000185" id="R_MAR05616" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -299093,7 +299070,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05616">
+            <rdf:Description rdf:about="#R_MAR05616">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105638"/>
@@ -299104,14 +299081,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01307e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02184c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01307e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02184c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01307c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02184e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01307c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02184e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -299120,7 +299097,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05617" sboTerm="SBO:0000185" id="MAR05617" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05617" sboTerm="SBO:0000185" id="R_MAR05617" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -299129,7 +299106,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05617">
+            <rdf:Description rdf:about="#R_MAR05617">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105639"/>
@@ -299140,14 +299117,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01975e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01986c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01975e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01975c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01986e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01975c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -299156,7 +299133,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05618" sboTerm="SBO:0000185" id="MAR05618" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05618" sboTerm="SBO:0000185" id="R_MAR05618" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -299165,7 +299142,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05618">
+            <rdf:Description rdf:about="#R_MAR05618">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GLNALANaEx"/>
@@ -299177,14 +299154,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01307c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01975e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01307c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01975e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01307e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01975c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01307e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01975c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -299194,7 +299171,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05619" sboTerm="SBO:0000185" id="MAR05619" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05619" sboTerm="SBO:0000185" id="R_MAR05619" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -299203,7 +299180,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05619">
+            <rdf:Description rdf:about="#R_MAR05619">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GLNSERNaEx"/>
@@ -299215,14 +299192,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01975e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02896c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01975e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02896c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01975c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02896e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01975c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02896e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -299232,7 +299209,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05620" sboTerm="SBO:0000185" id="MAR05620" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05620" sboTerm="SBO:0000185" id="R_MAR05620" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -299241,7 +299218,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05620">
+            <rdf:Description rdf:about="#R_MAR05620">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105640"/>
@@ -299252,14 +299229,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01975e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02471c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01975e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02471c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01975c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02471e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01975c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02471e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -299268,7 +299245,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05621" sboTerm="SBO:0000185" id="MAR05621" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05621" sboTerm="SBO:0000185" id="R_MAR05621" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -299277,7 +299254,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05621">
+            <rdf:Description rdf:about="#R_MAR05621">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105641"/>
@@ -299288,14 +299265,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01975e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03089c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01975e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03089c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01975c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03089e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01975c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03089e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -299304,7 +299281,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05622" sboTerm="SBO:0000185" id="MAR05622" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05622" sboTerm="SBO:0000185" id="R_MAR05622" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -299313,7 +299290,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05622">
+            <rdf:Description rdf:about="#R_MAR05622">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105642"/>
@@ -299324,14 +299301,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01975e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02724c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01975e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02724c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01975c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02724e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01975c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02724e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -299340,7 +299317,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05623" sboTerm="SBO:0000185" id="MAR05623" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05623" sboTerm="SBO:0000185" id="R_MAR05623" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -299349,7 +299326,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05623">
+            <rdf:Description rdf:about="#R_MAR05623">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105643"/>
@@ -299360,14 +299337,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01975e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03101c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01975e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03101c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01975c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03101e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01975c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03101e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -299376,7 +299353,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05624" sboTerm="SBO:0000185" id="MAR05624" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05624" sboTerm="SBO:0000185" id="R_MAR05624" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -299385,7 +299362,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05624">
+            <rdf:Description rdf:about="#R_MAR05624">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GLNCYSNaEx"/>
@@ -299397,14 +299374,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01628c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01975e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01628c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01975e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01628e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01975c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01628e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01975c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -299414,7 +299391,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05625" sboTerm="SBO:0000185" id="MAR05625" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05625" sboTerm="SBO:0000185" id="R_MAR05625" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -299423,7 +299400,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05625">
+            <rdf:Description rdf:about="#R_MAR05625">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105644"/>
@@ -299434,14 +299411,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01975e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02360c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01975e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02360c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01975c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02360e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01975c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02360e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -299450,7 +299427,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05626" sboTerm="SBO:0000185" id="MAR05626" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05626" sboTerm="SBO:0000185" id="R_MAR05626" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -299459,7 +299436,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05626">
+            <rdf:Description rdf:about="#R_MAR05626">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105645"/>
@@ -299470,14 +299447,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01975e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02770c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01975e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02770c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01975c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02770e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01975c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02770e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -299486,7 +299463,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05627" sboTerm="SBO:0000185" id="MAR05627" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05627" sboTerm="SBO:0000185" id="R_MAR05627" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -299495,7 +299472,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05627">
+            <rdf:Description rdf:about="#R_MAR05627">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GLNASNNaEx"/>
@@ -299507,14 +299484,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01369c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01975e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01369c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01975e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01369e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01975c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01369e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01975c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -299524,7 +299501,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05628" sboTerm="SBO:0000185" id="MAR05628" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05628" sboTerm="SBO:0000185" id="R_MAR05628" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -299533,7 +299510,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05628">
+            <rdf:Description rdf:about="#R_MAR05628">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105646"/>
@@ -299544,14 +299521,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01975e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03135c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01975e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03135c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01975c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03135e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01975c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03135e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -299560,7 +299537,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05629" sboTerm="SBO:0000185" id="MAR05629" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05629" sboTerm="SBO:0000185" id="R_MAR05629" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -299569,7 +299546,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05629">
+            <rdf:Description rdf:about="#R_MAR05629">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GLNTHRNaEx"/>
@@ -299581,14 +299558,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01975e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02993c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01975e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02993c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01975c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02993e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01975c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02993e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -299598,7 +299575,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05630" sboTerm="SBO:0000185" id="MAR05630" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05630" sboTerm="SBO:0000185" id="R_MAR05630" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -299607,7 +299584,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05630">
+            <rdf:Description rdf:about="#R_MAR05630">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105647"/>
@@ -299618,14 +299595,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01975e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02136c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01975e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02136c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01975c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02136e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01975c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02136e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -299634,7 +299611,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05631" sboTerm="SBO:0000185" id="MAR05631" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05631" sboTerm="SBO:0000185" id="R_MAR05631" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -299643,7 +299620,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05631">
+            <rdf:Description rdf:about="#R_MAR05631">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105648"/>
@@ -299654,14 +299631,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01975e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02184c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01975e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02184c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01975c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02184e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01975c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02184e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -299670,7 +299647,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05632" sboTerm="SBO:0000185" id="MAR05632" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05632" sboTerm="SBO:0000185" id="R_MAR05632" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -299679,7 +299656,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05632">
+            <rdf:Description rdf:about="#R_MAR05632">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105649"/>
@@ -299690,14 +299667,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01986c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02896e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02896e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01986e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02896c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02896c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -299706,7 +299683,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05633" sboTerm="SBO:0000185" id="MAR05633" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05633" sboTerm="SBO:0000185" id="R_MAR05633" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -299715,7 +299692,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05633">
+            <rdf:Description rdf:about="#R_MAR05633">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/SERALANaEx"/>
@@ -299727,14 +299704,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01307c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02896e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01307c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02896e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01307e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02896c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01307e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02896c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -299744,7 +299721,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05634" sboTerm="SBO:0000185" id="MAR05634" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05634" sboTerm="SBO:0000185" id="R_MAR05634" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -299753,7 +299730,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05634">
+            <rdf:Description rdf:about="#R_MAR05634">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/SERGLNNaEx"/>
@@ -299765,14 +299742,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01975c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02896e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01975c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02896e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01975e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02896c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01975e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02896c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -299782,7 +299759,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05635" sboTerm="SBO:0000185" id="MAR05635" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05635" sboTerm="SBO:0000185" id="R_MAR05635" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -299791,7 +299768,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05635">
+            <rdf:Description rdf:about="#R_MAR05635">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105650"/>
@@ -299802,14 +299779,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02471c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02896e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02471c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02896e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02471e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02896c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02471e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02896c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -299818,7 +299795,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05636" sboTerm="SBO:0000185" id="MAR05636" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05636" sboTerm="SBO:0000185" id="R_MAR05636" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -299827,7 +299804,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05636">
+            <rdf:Description rdf:about="#R_MAR05636">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105651"/>
@@ -299838,14 +299815,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02896e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03089c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02896e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03089c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02896c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03089e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02896c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03089e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -299854,7 +299831,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05637" sboTerm="SBO:0000185" id="MAR05637" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05637" sboTerm="SBO:0000185" id="R_MAR05637" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -299863,7 +299840,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05637">
+            <rdf:Description rdf:about="#R_MAR05637">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105652"/>
@@ -299874,14 +299851,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02724c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02896e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02724c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02896e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02724e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02896c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02724e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02896c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -299890,7 +299867,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05638" sboTerm="SBO:0000185" id="MAR05638" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05638" sboTerm="SBO:0000185" id="R_MAR05638" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -299899,7 +299876,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05638">
+            <rdf:Description rdf:about="#R_MAR05638">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105653"/>
@@ -299910,14 +299887,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02896e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03101c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02896e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03101c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02896c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03101e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02896c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03101e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -299926,7 +299903,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05639" sboTerm="SBO:0000185" id="MAR05639" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05639" sboTerm="SBO:0000185" id="R_MAR05639" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -299935,7 +299912,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05639">
+            <rdf:Description rdf:about="#R_MAR05639">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/SERCYSNaEx"/>
@@ -299947,14 +299924,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01628c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02896e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01628c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02896e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01628e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02896c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01628e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02896c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -299964,7 +299941,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05640" sboTerm="SBO:0000185" id="MAR05640" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05640" sboTerm="SBO:0000185" id="R_MAR05640" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -299973,7 +299950,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05640">
+            <rdf:Description rdf:about="#R_MAR05640">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105654"/>
@@ -299984,14 +299961,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02360c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02896e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02360c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02896e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02360e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02896c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02360e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02896c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -300000,7 +299977,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05641" sboTerm="SBO:0000185" id="MAR05641" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05641" sboTerm="SBO:0000185" id="R_MAR05641" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -300009,7 +299986,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05641">
+            <rdf:Description rdf:about="#R_MAR05641">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105655"/>
@@ -300020,14 +299997,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02770c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02896e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02770c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02896e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02770e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02896c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02770e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02896c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -300036,7 +300013,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05642" sboTerm="SBO:0000185" id="MAR05642" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05642" sboTerm="SBO:0000185" id="R_MAR05642" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -300045,7 +300022,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05642">
+            <rdf:Description rdf:about="#R_MAR05642">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/SERASNNaEx"/>
@@ -300057,14 +300034,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01369c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02896e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01369c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02896e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01369e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02896c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01369e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02896c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -300074,7 +300051,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05643" sboTerm="SBO:0000185" id="MAR05643" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05643" sboTerm="SBO:0000185" id="R_MAR05643" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -300083,7 +300060,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05643">
+            <rdf:Description rdf:about="#R_MAR05643">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105656"/>
@@ -300094,14 +300071,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02896e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03135c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02896e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03135c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02896c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03135e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02896c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03135e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -300110,7 +300087,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05644" sboTerm="SBO:0000185" id="MAR05644" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05644" sboTerm="SBO:0000185" id="R_MAR05644" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -300119,7 +300096,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05644">
+            <rdf:Description rdf:about="#R_MAR05644">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/SERTHRNaEx"/>
@@ -300131,14 +300108,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02896e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02993c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02896e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02993c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02896c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02993e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02896c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02993e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -300148,7 +300125,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05645" sboTerm="SBO:0000185" id="MAR05645" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05645" sboTerm="SBO:0000185" id="R_MAR05645" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -300157,7 +300134,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05645">
+            <rdf:Description rdf:about="#R_MAR05645">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105657"/>
@@ -300168,14 +300145,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02136c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02896e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02136c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02896e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02136e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02896c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02136e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02896c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -300184,7 +300161,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05646" sboTerm="SBO:0000185" id="MAR05646" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05646" sboTerm="SBO:0000185" id="R_MAR05646" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -300193,7 +300170,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05646">
+            <rdf:Description rdf:about="#R_MAR05646">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105658"/>
@@ -300204,14 +300181,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02184c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02896e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02184c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02896e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02184e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02896c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02184e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02896c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -300220,7 +300197,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05647" sboTerm="SBO:0000185" id="MAR05647" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05647" sboTerm="SBO:0000185" id="R_MAR05647" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -300229,7 +300206,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05647">
+            <rdf:Description rdf:about="#R_MAR05647">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105659"/>
@@ -300240,14 +300217,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01986c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02471e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02471e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01986e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02471c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02471c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -300256,7 +300233,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05648" sboTerm="SBO:0000185" id="MAR05648" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05648" sboTerm="SBO:0000185" id="R_MAR05648" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -300265,7 +300242,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05648">
+            <rdf:Description rdf:about="#R_MAR05648">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105660"/>
@@ -300276,14 +300253,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01307c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02471e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01307c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02471e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01307e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02471c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01307e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02471c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -300292,7 +300269,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05649" sboTerm="SBO:0000185" id="MAR05649" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05649" sboTerm="SBO:0000185" id="R_MAR05649" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -300301,7 +300278,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05649">
+            <rdf:Description rdf:about="#R_MAR05649">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105661"/>
@@ -300312,14 +300289,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01975c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02471e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01975c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02471e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01975e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02471c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01975e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02471c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -300328,7 +300305,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05650" sboTerm="SBO:0000185" id="MAR05650" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05650" sboTerm="SBO:0000185" id="R_MAR05650" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -300337,7 +300314,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05650">
+            <rdf:Description rdf:about="#R_MAR05650">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105662"/>
@@ -300348,14 +300325,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02471e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02896c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02471e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02896c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02471c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02896e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02471c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02896e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -300364,7 +300341,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05651" sboTerm="SBO:0000185" id="MAR05651" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05651" sboTerm="SBO:0000185" id="R_MAR05651" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -300373,7 +300350,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05651">
+            <rdf:Description rdf:about="#R_MAR05651">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105663"/>
@@ -300384,14 +300361,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02471e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03089c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02471e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03089c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02471c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03089e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02471c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03089e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -300400,7 +300377,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05652" sboTerm="SBO:0000185" id="MAR05652" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05652" sboTerm="SBO:0000185" id="R_MAR05652" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -300409,7 +300386,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05652">
+            <rdf:Description rdf:about="#R_MAR05652">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105664"/>
@@ -300420,14 +300397,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02471e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02724c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02471e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02724c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02471c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02724e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02471c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02724e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -300436,7 +300413,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05653" sboTerm="SBO:0000185" id="MAR05653" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05653" sboTerm="SBO:0000185" id="R_MAR05653" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -300445,7 +300422,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05653">
+            <rdf:Description rdf:about="#R_MAR05653">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105665"/>
@@ -300456,14 +300433,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02471e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03101c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02471e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03101c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02471c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03101e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02471c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03101e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -300472,7 +300449,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05654" sboTerm="SBO:0000185" id="MAR05654" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05654" sboTerm="SBO:0000185" id="R_MAR05654" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -300481,7 +300458,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05654">
+            <rdf:Description rdf:about="#R_MAR05654">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105666"/>
@@ -300492,14 +300469,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01628c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02471e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01628c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02471e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01628e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02471c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01628e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02471c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -300508,7 +300485,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05655" sboTerm="SBO:0000185" id="MAR05655" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05655" sboTerm="SBO:0000185" id="R_MAR05655" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -300517,7 +300494,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05655">
+            <rdf:Description rdf:about="#R_MAR05655">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105667"/>
@@ -300528,14 +300505,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02360c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02471e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02360c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02471e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02360e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02471c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02360e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02471c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -300544,7 +300521,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05656" sboTerm="SBO:0000185" id="MAR05656" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05656" sboTerm="SBO:0000185" id="R_MAR05656" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -300553,7 +300530,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05656">
+            <rdf:Description rdf:about="#R_MAR05656">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105668"/>
@@ -300564,14 +300541,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02471e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02770c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02471e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02770c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02471c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02770e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02471c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02770e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -300580,7 +300557,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05657" sboTerm="SBO:0000185" id="MAR05657" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05657" sboTerm="SBO:0000185" id="R_MAR05657" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -300589,7 +300566,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05657">
+            <rdf:Description rdf:about="#R_MAR05657">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105669"/>
@@ -300600,14 +300577,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01369c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02471e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01369c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02471e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01369e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02471c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01369e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02471c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -300616,7 +300593,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05658" sboTerm="SBO:0000185" id="MAR05658" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05658" sboTerm="SBO:0000185" id="R_MAR05658" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -300625,7 +300602,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05658">
+            <rdf:Description rdf:about="#R_MAR05658">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105670"/>
@@ -300636,14 +300613,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02471e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03135c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02471e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03135c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02471c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03135e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02471c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03135e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -300652,7 +300629,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05659" sboTerm="SBO:0000185" id="MAR05659" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05659" sboTerm="SBO:0000185" id="R_MAR05659" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -300661,7 +300638,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05659">
+            <rdf:Description rdf:about="#R_MAR05659">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105671"/>
@@ -300672,14 +300649,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02471e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02993c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02471e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02993c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02471c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02993e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02471c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02993e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -300688,7 +300665,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05660" sboTerm="SBO:0000185" id="MAR05660" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05660" sboTerm="SBO:0000185" id="R_MAR05660" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -300697,7 +300674,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05660">
+            <rdf:Description rdf:about="#R_MAR05660">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105672"/>
@@ -300708,14 +300685,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02136c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02471e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02136c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02471e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02136e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02471c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02136e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02471c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -300724,7 +300701,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05661" sboTerm="SBO:0000185" id="MAR05661" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05661" sboTerm="SBO:0000185" id="R_MAR05661" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -300733,7 +300710,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05661">
+            <rdf:Description rdf:about="#R_MAR05661">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105673"/>
@@ -300744,14 +300721,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02184c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02471e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02184c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02471e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02184e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02471c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02184e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02471c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -300760,7 +300737,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05662" sboTerm="SBO:0000185" id="MAR05662" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05662" sboTerm="SBO:0000185" id="R_MAR05662" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -300769,7 +300746,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05662">
+            <rdf:Description rdf:about="#R_MAR05662">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105674"/>
@@ -300780,14 +300757,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01986c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03089e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03089e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01986e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03089c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03089c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -300796,7 +300773,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05663" sboTerm="SBO:0000185" id="MAR05663" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05663" sboTerm="SBO:0000185" id="R_MAR05663" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -300805,7 +300782,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05663">
+            <rdf:Description rdf:about="#R_MAR05663">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105675"/>
@@ -300816,14 +300793,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01307c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03089e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01307c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03089e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01307e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03089c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01307e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03089c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -300832,7 +300809,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05664" sboTerm="SBO:0000185" id="MAR05664" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05664" sboTerm="SBO:0000185" id="R_MAR05664" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -300841,7 +300818,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05664">
+            <rdf:Description rdf:about="#R_MAR05664">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105676"/>
@@ -300852,14 +300829,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01975c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03089e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01975c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03089e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01975e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03089c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01975e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03089c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -300868,7 +300845,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05665" sboTerm="SBO:0000185" id="MAR05665" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05665" sboTerm="SBO:0000185" id="R_MAR05665" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -300877,7 +300854,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05665">
+            <rdf:Description rdf:about="#R_MAR05665">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105677"/>
@@ -300888,14 +300865,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02896c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03089e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02896c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03089e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02896e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03089c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02896e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03089c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -300904,7 +300881,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05666" sboTerm="SBO:0000185" id="MAR05666" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05666" sboTerm="SBO:0000185" id="R_MAR05666" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -300913,7 +300890,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05666">
+            <rdf:Description rdf:about="#R_MAR05666">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105678"/>
@@ -300924,14 +300901,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02471c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03089e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02471c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03089e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02471e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03089c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02471e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03089c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -300940,7 +300917,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05667" sboTerm="SBO:0000185" id="MAR05667" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05667" sboTerm="SBO:0000185" id="R_MAR05667" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -300949,7 +300926,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05667">
+            <rdf:Description rdf:about="#R_MAR05667">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105679"/>
@@ -300960,14 +300937,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02724c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03089e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02724c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03089e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02724e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03089c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02724e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03089c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -300976,7 +300953,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05668" sboTerm="SBO:0000185" id="MAR05668" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05668" sboTerm="SBO:0000185" id="R_MAR05668" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -300985,7 +300962,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05668">
+            <rdf:Description rdf:about="#R_MAR05668">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105680"/>
@@ -300996,14 +300973,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03089e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03101c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03089e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03101c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03089c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03101e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03089c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03101e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -301012,7 +300989,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05669" sboTerm="SBO:0000185" id="MAR05669" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05669" sboTerm="SBO:0000185" id="R_MAR05669" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -301021,7 +300998,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05669">
+            <rdf:Description rdf:about="#R_MAR05669">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105681"/>
@@ -301032,14 +301009,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01628c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03089e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01628c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03089e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01628e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03089c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01628e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03089c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -301048,7 +301025,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05670" sboTerm="SBO:0000185" id="MAR05670" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05670" sboTerm="SBO:0000185" id="R_MAR05670" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -301057,7 +301034,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05670">
+            <rdf:Description rdf:about="#R_MAR05670">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105682"/>
@@ -301068,14 +301045,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02360c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03089e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02360c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03089e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02360e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03089c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02360e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03089c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -301084,7 +301061,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05671" sboTerm="SBO:0000185" id="MAR05671" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05671" sboTerm="SBO:0000185" id="R_MAR05671" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -301093,7 +301070,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05671">
+            <rdf:Description rdf:about="#R_MAR05671">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105683"/>
@@ -301104,14 +301081,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02770c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03089e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02770c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03089e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02770e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03089c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02770e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03089c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -301120,7 +301097,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05672" sboTerm="SBO:0000185" id="MAR05672" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05672" sboTerm="SBO:0000185" id="R_MAR05672" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -301129,7 +301106,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05672">
+            <rdf:Description rdf:about="#R_MAR05672">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105684"/>
@@ -301140,14 +301117,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01369c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03089e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01369c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03089e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01369e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03089c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01369e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03089c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -301156,7 +301133,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05673" sboTerm="SBO:0000185" id="MAR05673" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05673" sboTerm="SBO:0000185" id="R_MAR05673" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -301165,7 +301142,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05673">
+            <rdf:Description rdf:about="#R_MAR05673">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105685"/>
@@ -301176,14 +301153,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03089e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03135c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03089e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03135c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03089c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03135e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03089c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03135e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -301192,7 +301169,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05674" sboTerm="SBO:0000185" id="MAR05674" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05674" sboTerm="SBO:0000185" id="R_MAR05674" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -301201,7 +301178,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05674">
+            <rdf:Description rdf:about="#R_MAR05674">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105686"/>
@@ -301212,14 +301189,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02993c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03089e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02993c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03089e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02993e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03089c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02993e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03089c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -301228,7 +301205,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05675" sboTerm="SBO:0000185" id="MAR05675" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05675" sboTerm="SBO:0000185" id="R_MAR05675" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -301237,7 +301214,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05675">
+            <rdf:Description rdf:about="#R_MAR05675">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105687"/>
@@ -301248,14 +301225,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02136c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03089e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02136c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03089e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02136e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03089c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02136e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03089c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -301264,7 +301241,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05676" sboTerm="SBO:0000185" id="MAR05676" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05676" sboTerm="SBO:0000185" id="R_MAR05676" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -301273,7 +301250,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05676">
+            <rdf:Description rdf:about="#R_MAR05676">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105688"/>
@@ -301284,14 +301261,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02184c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03089e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02184c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03089e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02184e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03089c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02184e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03089c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -301300,7 +301277,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05677" sboTerm="SBO:0000185" id="MAR05677" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05677" sboTerm="SBO:0000185" id="R_MAR05677" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -301309,7 +301286,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05677">
+            <rdf:Description rdf:about="#R_MAR05677">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105689"/>
@@ -301320,14 +301297,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01986c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02724e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02724e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01986e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02724c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02724c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -301336,7 +301313,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05678" sboTerm="SBO:0000185" id="MAR05678" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05678" sboTerm="SBO:0000185" id="R_MAR05678" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -301345,7 +301322,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05678">
+            <rdf:Description rdf:about="#R_MAR05678">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105690"/>
@@ -301356,14 +301333,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01307c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02724e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01307c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02724e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01307e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02724c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01307e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02724c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -301372,7 +301349,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05679" sboTerm="SBO:0000185" id="MAR05679" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05679" sboTerm="SBO:0000185" id="R_MAR05679" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -301381,7 +301358,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05679">
+            <rdf:Description rdf:about="#R_MAR05679">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105691"/>
@@ -301392,14 +301369,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01975c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02724e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01975c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02724e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01975e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02724c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01975e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02724c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -301408,7 +301385,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05680" sboTerm="SBO:0000185" id="MAR05680" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05680" sboTerm="SBO:0000185" id="R_MAR05680" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -301417,7 +301394,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05680">
+            <rdf:Description rdf:about="#R_MAR05680">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105692"/>
@@ -301428,14 +301405,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02724e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02896c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02724e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02896c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02724c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02896e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02724c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02896e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -301444,7 +301421,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05681" sboTerm="SBO:0000185" id="MAR05681" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05681" sboTerm="SBO:0000185" id="R_MAR05681" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -301453,7 +301430,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05681">
+            <rdf:Description rdf:about="#R_MAR05681">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105693"/>
@@ -301464,14 +301441,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02471c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02724e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02471c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02724e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02471e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02724c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02471e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02724c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -301480,7 +301457,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05682" sboTerm="SBO:0000185" id="MAR05682" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05682" sboTerm="SBO:0000185" id="R_MAR05682" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -301489,7 +301466,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05682">
+            <rdf:Description rdf:about="#R_MAR05682">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105694"/>
@@ -301500,14 +301477,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02724e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03089c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02724e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03089c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02724c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03089e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02724c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03089e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -301516,7 +301493,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05683" sboTerm="SBO:0000185" id="MAR05683" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05683" sboTerm="SBO:0000185" id="R_MAR05683" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -301525,7 +301502,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05683">
+            <rdf:Description rdf:about="#R_MAR05683">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105695"/>
@@ -301536,14 +301513,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02724e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03101c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02724e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03101c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02724c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03101e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02724c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03101e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -301552,7 +301529,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05684" sboTerm="SBO:0000185" id="MAR05684" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05684" sboTerm="SBO:0000185" id="R_MAR05684" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -301561,7 +301538,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05684">
+            <rdf:Description rdf:about="#R_MAR05684">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105696"/>
@@ -301572,14 +301549,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01628c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02724e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01628c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02724e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01628e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02724c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01628e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02724c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -301588,7 +301565,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05685" sboTerm="SBO:0000185" id="MAR05685" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05685" sboTerm="SBO:0000185" id="R_MAR05685" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -301597,7 +301574,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05685">
+            <rdf:Description rdf:about="#R_MAR05685">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105697"/>
@@ -301608,14 +301585,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02360c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02724e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02360c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02724e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02360e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02724c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02360e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02724c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -301624,7 +301601,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05686" sboTerm="SBO:0000185" id="MAR05686" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05686" sboTerm="SBO:0000185" id="R_MAR05686" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -301633,7 +301610,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05686">
+            <rdf:Description rdf:about="#R_MAR05686">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105698"/>
@@ -301644,14 +301621,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02724e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02770c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02724e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02770c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02724c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02770e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02724c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02770e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -301660,7 +301637,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05687" sboTerm="SBO:0000185" id="MAR05687" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05687" sboTerm="SBO:0000185" id="R_MAR05687" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -301669,7 +301646,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05687">
+            <rdf:Description rdf:about="#R_MAR05687">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105699"/>
@@ -301680,14 +301657,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01369c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02724e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01369c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02724e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01369e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02724c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01369e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02724c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -301696,7 +301673,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05688" sboTerm="SBO:0000185" id="MAR05688" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05688" sboTerm="SBO:0000185" id="R_MAR05688" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -301705,7 +301682,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05688">
+            <rdf:Description rdf:about="#R_MAR05688">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105700"/>
@@ -301716,14 +301693,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02724e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03135c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02724e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03135c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02724c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03135e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02724c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03135e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -301732,7 +301709,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05689" sboTerm="SBO:0000185" id="MAR05689" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05689" sboTerm="SBO:0000185" id="R_MAR05689" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -301741,7 +301718,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05689">
+            <rdf:Description rdf:about="#R_MAR05689">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105701"/>
@@ -301752,14 +301729,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02724e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02993c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02724e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02993c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02724c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02993e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02724c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02993e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -301768,7 +301745,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05690" sboTerm="SBO:0000185" id="MAR05690" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05690" sboTerm="SBO:0000185" id="R_MAR05690" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -301777,7 +301754,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05690">
+            <rdf:Description rdf:about="#R_MAR05690">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105702"/>
@@ -301788,14 +301765,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02136c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02724e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02136c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02724e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02136e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02724c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02136e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02724c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -301804,7 +301781,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05691" sboTerm="SBO:0000185" id="MAR05691" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05691" sboTerm="SBO:0000185" id="R_MAR05691" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -301813,7 +301790,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05691">
+            <rdf:Description rdf:about="#R_MAR05691">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105703"/>
@@ -301824,14 +301801,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02184c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02724e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02184c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02724e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02184e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02724c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02184e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02724c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -301840,7 +301817,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05692" sboTerm="SBO:0000185" id="MAR05692" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05692" sboTerm="SBO:0000185" id="R_MAR05692" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -301849,7 +301826,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05692">
+            <rdf:Description rdf:about="#R_MAR05692">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105704"/>
@@ -301860,14 +301837,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01986c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03101e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03101e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01986e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03101c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03101c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -301876,7 +301853,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05693" sboTerm="SBO:0000185" id="MAR05693" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05693" sboTerm="SBO:0000185" id="R_MAR05693" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -301885,7 +301862,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05693">
+            <rdf:Description rdf:about="#R_MAR05693">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105705"/>
@@ -301896,14 +301873,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01307c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03101e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01307c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03101e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01307e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03101c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01307e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03101c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -301912,7 +301889,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05694" sboTerm="SBO:0000185" id="MAR05694" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05694" sboTerm="SBO:0000185" id="R_MAR05694" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -301921,7 +301898,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05694">
+            <rdf:Description rdf:about="#R_MAR05694">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105706"/>
@@ -301932,14 +301909,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01975c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03101e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01975c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03101e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01975e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03101c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01975e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03101c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -301948,7 +301925,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05695" sboTerm="SBO:0000185" id="MAR05695" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05695" sboTerm="SBO:0000185" id="R_MAR05695" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -301957,7 +301934,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05695">
+            <rdf:Description rdf:about="#R_MAR05695">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105707"/>
@@ -301968,14 +301945,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02896c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03101e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02896c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03101e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02896e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03101c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02896e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03101c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -301984,7 +301961,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05696" sboTerm="SBO:0000185" id="MAR05696" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05696" sboTerm="SBO:0000185" id="R_MAR05696" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -301993,7 +301970,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05696">
+            <rdf:Description rdf:about="#R_MAR05696">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105708"/>
@@ -302004,14 +301981,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02471c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03101e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02471c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03101e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02471e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03101c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02471e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03101c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -302020,7 +301997,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05697" sboTerm="SBO:0000185" id="MAR05697" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05697" sboTerm="SBO:0000185" id="R_MAR05697" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -302029,7 +302006,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05697">
+            <rdf:Description rdf:about="#R_MAR05697">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105709"/>
@@ -302040,14 +302017,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03089c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03101e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03089c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03101e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03089e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03101c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03089e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03101c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -302056,7 +302033,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05698" sboTerm="SBO:0000185" id="MAR05698" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05698" sboTerm="SBO:0000185" id="R_MAR05698" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -302065,7 +302042,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05698">
+            <rdf:Description rdf:about="#R_MAR05698">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105710"/>
@@ -302076,14 +302053,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02724c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03101e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02724c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03101e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02724e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03101c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02724e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03101c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -302092,7 +302069,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05699" sboTerm="SBO:0000185" id="MAR05699" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05699" sboTerm="SBO:0000185" id="R_MAR05699" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -302101,7 +302078,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05699">
+            <rdf:Description rdf:about="#R_MAR05699">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105711"/>
@@ -302112,14 +302089,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01628c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03101e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01628c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03101e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01628e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03101c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01628e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03101c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -302128,7 +302105,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05700" sboTerm="SBO:0000185" id="MAR05700" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05700" sboTerm="SBO:0000185" id="R_MAR05700" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -302137,7 +302114,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05700">
+            <rdf:Description rdf:about="#R_MAR05700">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105712"/>
@@ -302148,14 +302125,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02360c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03101e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02360c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03101e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02360e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03101c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02360e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03101c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -302164,7 +302141,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05701" sboTerm="SBO:0000185" id="MAR05701" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05701" sboTerm="SBO:0000185" id="R_MAR05701" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -302173,7 +302150,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05701">
+            <rdf:Description rdf:about="#R_MAR05701">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105713"/>
@@ -302184,14 +302161,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02770c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03101e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02770c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03101e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02770e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03101c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02770e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03101c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -302200,7 +302177,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05702" sboTerm="SBO:0000185" id="MAR05702" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05702" sboTerm="SBO:0000185" id="R_MAR05702" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -302209,7 +302186,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05702">
+            <rdf:Description rdf:about="#R_MAR05702">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105714"/>
@@ -302220,14 +302197,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01369c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03101e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01369c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03101e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01369e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03101c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01369e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03101c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -302236,7 +302213,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05703" sboTerm="SBO:0000185" id="MAR05703" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05703" sboTerm="SBO:0000185" id="R_MAR05703" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -302245,7 +302222,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05703">
+            <rdf:Description rdf:about="#R_MAR05703">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105715"/>
@@ -302256,14 +302233,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03101e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03135c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03101e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03135c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03101c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03135e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03101c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03135e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -302272,7 +302249,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05704" sboTerm="SBO:0000185" id="MAR05704" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05704" sboTerm="SBO:0000185" id="R_MAR05704" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -302281,7 +302258,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05704">
+            <rdf:Description rdf:about="#R_MAR05704">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105716"/>
@@ -302292,14 +302269,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02993c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03101e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02993c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03101e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02993e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03101c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02993e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03101c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -302308,7 +302285,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05705" sboTerm="SBO:0000185" id="MAR05705" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05705" sboTerm="SBO:0000185" id="R_MAR05705" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -302317,7 +302294,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05705">
+            <rdf:Description rdf:about="#R_MAR05705">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105717"/>
@@ -302328,14 +302305,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02136c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03101e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02136c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03101e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02136e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03101c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02136e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03101c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -302344,7 +302321,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05706" sboTerm="SBO:0000185" id="MAR05706" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05706" sboTerm="SBO:0000185" id="R_MAR05706" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -302353,7 +302330,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05706">
+            <rdf:Description rdf:about="#R_MAR05706">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105718"/>
@@ -302364,14 +302341,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02184c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03101e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02184c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03101e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02184e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03101c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02184e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03101c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -302380,7 +302357,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05707" sboTerm="SBO:0000185" id="MAR05707" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05707" sboTerm="SBO:0000185" id="R_MAR05707" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -302389,7 +302366,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05707">
+            <rdf:Description rdf:about="#R_MAR05707">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105719"/>
@@ -302400,14 +302377,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01628e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01986c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01628e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01628c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01986e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01628c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -302416,7 +302393,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05708" sboTerm="SBO:0000185" id="MAR05708" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05708" sboTerm="SBO:0000185" id="R_MAR05708" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -302425,7 +302402,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05708">
+            <rdf:Description rdf:about="#R_MAR05708">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CYSALANaEx"/>
@@ -302437,14 +302414,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01307c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01628e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01307c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01628e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01307e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01628c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01307e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01628c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -302454,7 +302431,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05709" sboTerm="SBO:0000185" id="MAR05709" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05709" sboTerm="SBO:0000185" id="R_MAR05709" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -302463,7 +302440,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05709">
+            <rdf:Description rdf:about="#R_MAR05709">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CYSGLNNaEx"/>
@@ -302475,14 +302452,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01628e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01975c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01628e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01975c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01628c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01975e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01628c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01975e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -302492,7 +302469,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05710" sboTerm="SBO:0000185" id="MAR05710" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05710" sboTerm="SBO:0000185" id="R_MAR05710" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -302501,7 +302478,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05710">
+            <rdf:Description rdf:about="#R_MAR05710">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CYSSERNaEx"/>
@@ -302513,14 +302490,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01628e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02896c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01628e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02896c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01628c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02896e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01628c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02896e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -302530,7 +302507,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05711" sboTerm="SBO:0000185" id="MAR05711" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05711" sboTerm="SBO:0000185" id="R_MAR05711" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -302539,7 +302516,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05711">
+            <rdf:Description rdf:about="#R_MAR05711">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105720"/>
@@ -302550,14 +302527,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01628e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02471c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01628e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02471c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01628c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02471e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01628c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02471e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -302566,7 +302543,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05712" sboTerm="SBO:0000185" id="MAR05712" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05712" sboTerm="SBO:0000185" id="R_MAR05712" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -302575,7 +302552,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05712">
+            <rdf:Description rdf:about="#R_MAR05712">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105721"/>
@@ -302586,14 +302563,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01628e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03089c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01628e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03089c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01628c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03089e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01628c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03089e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -302602,7 +302579,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05713" sboTerm="SBO:0000185" id="MAR05713" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05713" sboTerm="SBO:0000185" id="R_MAR05713" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -302611,7 +302588,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05713">
+            <rdf:Description rdf:about="#R_MAR05713">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105722"/>
@@ -302622,14 +302599,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01628e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02724c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01628e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02724c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01628c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02724e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01628c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02724e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -302638,7 +302615,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05714" sboTerm="SBO:0000185" id="MAR05714" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05714" sboTerm="SBO:0000185" id="R_MAR05714" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -302647,7 +302624,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05714">
+            <rdf:Description rdf:about="#R_MAR05714">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105723"/>
@@ -302658,14 +302635,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01628e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03101c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01628e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03101c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01628c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03101e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01628c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03101e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -302674,7 +302651,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05715" sboTerm="SBO:0000185" id="MAR05715" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05715" sboTerm="SBO:0000185" id="R_MAR05715" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -302683,7 +302660,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05715">
+            <rdf:Description rdf:about="#R_MAR05715">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105724"/>
@@ -302694,14 +302671,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01628e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02360c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01628e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02360c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01628c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02360e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01628c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02360e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -302710,7 +302687,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05716" sboTerm="SBO:0000185" id="MAR05716" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05716" sboTerm="SBO:0000185" id="R_MAR05716" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -302719,7 +302696,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05716">
+            <rdf:Description rdf:about="#R_MAR05716">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105725"/>
@@ -302730,14 +302707,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01628e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02770c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01628e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02770c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01628c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02770e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01628c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02770e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -302746,7 +302723,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05717" sboTerm="SBO:0000185" id="MAR05717" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05717" sboTerm="SBO:0000185" id="R_MAR05717" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -302755,7 +302732,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05717">
+            <rdf:Description rdf:about="#R_MAR05717">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CYSASNNaEx"/>
@@ -302767,14 +302744,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01369c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01628e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01369c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01628e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01369e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01628c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01369e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01628c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -302784,7 +302761,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05718" sboTerm="SBO:0000185" id="MAR05718" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05718" sboTerm="SBO:0000185" id="R_MAR05718" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -302793,7 +302770,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05718">
+            <rdf:Description rdf:about="#R_MAR05718">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105726"/>
@@ -302804,14 +302781,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01628e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03135c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01628e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03135c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01628c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03135e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01628c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03135e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -302820,7 +302797,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05719" sboTerm="SBO:0000185" id="MAR05719" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05719" sboTerm="SBO:0000185" id="R_MAR05719" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -302829,7 +302806,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05719">
+            <rdf:Description rdf:about="#R_MAR05719">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CYSTHRNaEx"/>
@@ -302841,14 +302818,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01628e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02993c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01628e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02993c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01628c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02993e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01628c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02993e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -302857,7 +302834,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05720" sboTerm="SBO:0000185" id="MAR05720" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05720" sboTerm="SBO:0000185" id="R_MAR05720" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -302866,7 +302843,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05720">
+            <rdf:Description rdf:about="#R_MAR05720">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105727"/>
@@ -302877,14 +302854,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01628e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02136c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01628e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02136c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01628c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02136e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01628c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02136e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -302893,7 +302870,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05721" sboTerm="SBO:0000185" id="MAR05721" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05721" sboTerm="SBO:0000185" id="R_MAR05721" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -302902,7 +302879,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05721">
+            <rdf:Description rdf:about="#R_MAR05721">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105728"/>
@@ -302913,14 +302890,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01628e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02184c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01628e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02184c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01628c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02184e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01628c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02184e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -302929,7 +302906,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05722" sboTerm="SBO:0000185" id="MAR05722" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05722" sboTerm="SBO:0000185" id="R_MAR05722" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -302938,7 +302915,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05722">
+            <rdf:Description rdf:about="#R_MAR05722">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105729"/>
@@ -302949,14 +302926,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01986c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02360e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02360e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01986e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02360c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02360c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -302965,7 +302942,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05723" sboTerm="SBO:0000185" id="MAR05723" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05723" sboTerm="SBO:0000185" id="R_MAR05723" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -302974,7 +302951,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05723">
+            <rdf:Description rdf:about="#R_MAR05723">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105730"/>
@@ -302985,14 +302962,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01307c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02360e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01307c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02360e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01307e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02360c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01307e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02360c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -303001,7 +302978,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05724" sboTerm="SBO:0000185" id="MAR05724" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05724" sboTerm="SBO:0000185" id="R_MAR05724" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -303010,7 +302987,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05724">
+            <rdf:Description rdf:about="#R_MAR05724">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105731"/>
@@ -303021,14 +302998,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01975c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02360e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01975c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02360e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01975e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02360c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01975e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02360c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -303037,7 +303014,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05725" sboTerm="SBO:0000185" id="MAR05725" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05725" sboTerm="SBO:0000185" id="R_MAR05725" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -303046,7 +303023,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05725">
+            <rdf:Description rdf:about="#R_MAR05725">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105732"/>
@@ -303057,14 +303034,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02360e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02896c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02360e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02896c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02360c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02896e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02360c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02896e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -303073,7 +303050,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05726" sboTerm="SBO:0000185" id="MAR05726" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05726" sboTerm="SBO:0000185" id="R_MAR05726" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -303082,7 +303059,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05726">
+            <rdf:Description rdf:about="#R_MAR05726">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105733"/>
@@ -303093,14 +303070,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02360e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02471c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02360e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02471c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02360c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02471e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02360c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02471e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -303109,7 +303086,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05727" sboTerm="SBO:0000185" id="MAR05727" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05727" sboTerm="SBO:0000185" id="R_MAR05727" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -303118,7 +303095,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05727">
+            <rdf:Description rdf:about="#R_MAR05727">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105734"/>
@@ -303129,14 +303106,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02360e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03089c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02360e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03089c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02360c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03089e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02360c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03089e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -303145,7 +303122,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05728" sboTerm="SBO:0000185" id="MAR05728" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05728" sboTerm="SBO:0000185" id="R_MAR05728" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -303154,7 +303131,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05728">
+            <rdf:Description rdf:about="#R_MAR05728">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105735"/>
@@ -303165,14 +303142,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02360e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02724c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02360e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02724c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02360c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02724e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02360c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02724e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -303181,7 +303158,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05729" sboTerm="SBO:0000185" id="MAR05729" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05729" sboTerm="SBO:0000185" id="R_MAR05729" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -303190,7 +303167,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05729">
+            <rdf:Description rdf:about="#R_MAR05729">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105736"/>
@@ -303201,14 +303178,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02360e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03101c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02360e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03101c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02360c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03101e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02360c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03101e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -303217,7 +303194,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05730" sboTerm="SBO:0000185" id="MAR05730" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05730" sboTerm="SBO:0000185" id="R_MAR05730" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -303226,7 +303203,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05730">
+            <rdf:Description rdf:about="#R_MAR05730">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105737"/>
@@ -303237,14 +303214,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01628c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02360e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01628c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02360e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01628e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02360c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01628e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02360c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -303253,7 +303230,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05731" sboTerm="SBO:0000185" id="MAR05731" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05731" sboTerm="SBO:0000185" id="R_MAR05731" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -303262,7 +303239,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05731">
+            <rdf:Description rdf:about="#R_MAR05731">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105738"/>
@@ -303273,14 +303250,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02360e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02770c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02360e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02770c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02360c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02770e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02360c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02770e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -303289,7 +303266,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05732" sboTerm="SBO:0000185" id="MAR05732" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05732" sboTerm="SBO:0000185" id="R_MAR05732" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -303298,7 +303275,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05732">
+            <rdf:Description rdf:about="#R_MAR05732">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105739"/>
@@ -303309,14 +303286,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01369c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02360e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01369c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02360e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01369e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02360c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01369e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02360c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -303325,7 +303302,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05733" sboTerm="SBO:0000185" id="MAR05733" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05733" sboTerm="SBO:0000185" id="R_MAR05733" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -303334,7 +303311,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05733">
+            <rdf:Description rdf:about="#R_MAR05733">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105740"/>
@@ -303345,14 +303322,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02360e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03135c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02360e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03135c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02360c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03135e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02360c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03135e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -303361,7 +303338,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05734" sboTerm="SBO:0000185" id="MAR05734" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05734" sboTerm="SBO:0000185" id="R_MAR05734" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -303370,7 +303347,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05734">
+            <rdf:Description rdf:about="#R_MAR05734">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105741"/>
@@ -303381,14 +303358,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02360e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02993c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02360e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02993c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02360c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02993e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02360c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02993e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -303397,7 +303374,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05735" sboTerm="SBO:0000185" id="MAR05735" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05735" sboTerm="SBO:0000185" id="R_MAR05735" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -303406,7 +303383,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05735">
+            <rdf:Description rdf:about="#R_MAR05735">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105742"/>
@@ -303417,14 +303394,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02136c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02360e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02136c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02360e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02136e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02360c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02136e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02360c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -303433,7 +303410,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05736" sboTerm="SBO:0000185" id="MAR05736" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05736" sboTerm="SBO:0000185" id="R_MAR05736" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -303442,7 +303419,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05736">
+            <rdf:Description rdf:about="#R_MAR05736">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105743"/>
@@ -303453,14 +303430,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02184c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02360e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02184c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02360e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02184e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02360c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02184e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02360c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -303469,7 +303446,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05737" sboTerm="SBO:0000185" id="MAR05737" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05737" sboTerm="SBO:0000185" id="R_MAR05737" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -303478,7 +303455,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05737">
+            <rdf:Description rdf:about="#R_MAR05737">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105744"/>
@@ -303489,14 +303466,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01986c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02770e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02770e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01986e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02770c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02770c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -303505,7 +303482,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05738" sboTerm="SBO:0000185" id="MAR05738" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05738" sboTerm="SBO:0000185" id="R_MAR05738" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -303514,7 +303491,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05738">
+            <rdf:Description rdf:about="#R_MAR05738">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105745"/>
@@ -303525,14 +303502,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01307c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02770e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01307c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02770e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01307e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02770c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01307e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02770c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -303541,7 +303518,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05739" sboTerm="SBO:0000185" id="MAR05739" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05739" sboTerm="SBO:0000185" id="R_MAR05739" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -303550,7 +303527,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05739">
+            <rdf:Description rdf:about="#R_MAR05739">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105746"/>
@@ -303561,14 +303538,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01975c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02770e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01975c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02770e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01975e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02770c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01975e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02770c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -303577,7 +303554,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05740" sboTerm="SBO:0000185" id="MAR05740" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05740" sboTerm="SBO:0000185" id="R_MAR05740" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -303586,7 +303563,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05740">
+            <rdf:Description rdf:about="#R_MAR05740">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105747"/>
@@ -303597,14 +303574,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02770e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02896c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02770e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02896c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02770c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02896e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02770c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02896e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -303613,7 +303590,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05741" sboTerm="SBO:0000185" id="MAR05741" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05741" sboTerm="SBO:0000185" id="R_MAR05741" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -303622,7 +303599,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05741">
+            <rdf:Description rdf:about="#R_MAR05741">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105748"/>
@@ -303633,14 +303610,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02471c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02770e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02471c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02770e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02471e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02770c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02471e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02770c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -303649,7 +303626,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05742" sboTerm="SBO:0000185" id="MAR05742" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05742" sboTerm="SBO:0000185" id="R_MAR05742" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -303658,7 +303635,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05742">
+            <rdf:Description rdf:about="#R_MAR05742">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105749"/>
@@ -303669,14 +303646,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02770e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03089c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02770e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03089c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02770c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03089e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02770c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03089e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -303685,7 +303662,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05743" sboTerm="SBO:0000185" id="MAR05743" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05743" sboTerm="SBO:0000185" id="R_MAR05743" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -303694,7 +303671,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05743">
+            <rdf:Description rdf:about="#R_MAR05743">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105750"/>
@@ -303705,14 +303682,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02724c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02770e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02724c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02770e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02724e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02770c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02724e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02770c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -303721,7 +303698,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05744" sboTerm="SBO:0000185" id="MAR05744" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05744" sboTerm="SBO:0000185" id="R_MAR05744" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -303730,7 +303707,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05744">
+            <rdf:Description rdf:about="#R_MAR05744">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105751"/>
@@ -303741,14 +303718,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02770e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03101c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02770e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03101c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02770c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03101e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02770c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03101e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -303757,7 +303734,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05745" sboTerm="SBO:0000185" id="MAR05745" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05745" sboTerm="SBO:0000185" id="R_MAR05745" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -303766,7 +303743,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05745">
+            <rdf:Description rdf:about="#R_MAR05745">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105752"/>
@@ -303777,14 +303754,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01628c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02770e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01628c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02770e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01628e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02770c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01628e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02770c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -303793,7 +303770,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05746" sboTerm="SBO:0000185" id="MAR05746" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05746" sboTerm="SBO:0000185" id="R_MAR05746" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -303802,7 +303779,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05746">
+            <rdf:Description rdf:about="#R_MAR05746">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105753"/>
@@ -303813,14 +303790,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02360c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02770e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02360c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02770e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02360e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02770c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02360e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02770c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -303829,7 +303806,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05747" sboTerm="SBO:0000185" id="MAR05747" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05747" sboTerm="SBO:0000185" id="R_MAR05747" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -303838,7 +303815,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05747">
+            <rdf:Description rdf:about="#R_MAR05747">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105754"/>
@@ -303849,14 +303826,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01369c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02770e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01369c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02770e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01369e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02770c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01369e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02770c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -303865,7 +303842,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05748" sboTerm="SBO:0000185" id="MAR05748" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05748" sboTerm="SBO:0000185" id="R_MAR05748" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -303874,7 +303851,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05748">
+            <rdf:Description rdf:about="#R_MAR05748">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105755"/>
@@ -303885,14 +303862,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02770e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03135c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02770e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03135c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02770c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03135e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02770c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03135e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -303901,7 +303878,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05749" sboTerm="SBO:0000185" id="MAR05749" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05749" sboTerm="SBO:0000185" id="R_MAR05749" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -303910,7 +303887,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05749">
+            <rdf:Description rdf:about="#R_MAR05749">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105756"/>
@@ -303921,14 +303898,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02770e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02993c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02770e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02993c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02770c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02993e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02770c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02993e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -303937,7 +303914,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05750" sboTerm="SBO:0000185" id="MAR05750" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05750" sboTerm="SBO:0000185" id="R_MAR05750" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -303946,7 +303923,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05750">
+            <rdf:Description rdf:about="#R_MAR05750">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105757"/>
@@ -303957,14 +303934,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02136c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02770e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02136c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02770e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02136e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02770c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02136e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02770c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -303973,7 +303950,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05751" sboTerm="SBO:0000185" id="MAR05751" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05751" sboTerm="SBO:0000185" id="R_MAR05751" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -303982,7 +303959,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05751">
+            <rdf:Description rdf:about="#R_MAR05751">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105758"/>
@@ -303993,14 +303970,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02184c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02770e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02184c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02770e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02184e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02770c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02184e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02770c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -304009,7 +303986,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05752" sboTerm="SBO:0000185" id="MAR05752" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05752" sboTerm="SBO:0000185" id="R_MAR05752" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -304018,7 +303995,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05752">
+            <rdf:Description rdf:about="#R_MAR05752">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105759"/>
@@ -304029,14 +304006,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01369e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01986c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01369e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01369c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01986e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01369c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -304045,7 +304022,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05753" sboTerm="SBO:0000185" id="MAR05753" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05753" sboTerm="SBO:0000185" id="R_MAR05753" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -304054,7 +304031,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05753">
+            <rdf:Description rdf:about="#R_MAR05753">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ASNALANaEx"/>
@@ -304066,14 +304043,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01307c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01369e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01307c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01369e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01307e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01369c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01307e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01369c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -304083,7 +304060,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05754" sboTerm="SBO:0000185" id="MAR05754" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05754" sboTerm="SBO:0000185" id="R_MAR05754" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -304092,7 +304069,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05754">
+            <rdf:Description rdf:about="#R_MAR05754">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ASNGLNNaEx"/>
@@ -304104,14 +304081,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01369e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01975c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01369e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01975c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01369c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01975e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01369c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01975e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -304121,7 +304098,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05755" sboTerm="SBO:0000185" id="MAR05755" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05755" sboTerm="SBO:0000185" id="R_MAR05755" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -304130,7 +304107,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05755">
+            <rdf:Description rdf:about="#R_MAR05755">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ASNSERNaEx"/>
@@ -304142,14 +304119,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01369e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02896c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01369e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02896c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01369c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02896e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01369c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02896e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -304159,7 +304136,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05756" sboTerm="SBO:0000185" id="MAR05756" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05756" sboTerm="SBO:0000185" id="R_MAR05756" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -304168,7 +304145,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05756">
+            <rdf:Description rdf:about="#R_MAR05756">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105760"/>
@@ -304179,14 +304156,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01369e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02471c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01369e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02471c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01369c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02471e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01369c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02471e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -304195,7 +304172,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05757" sboTerm="SBO:0000185" id="MAR05757" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05757" sboTerm="SBO:0000185" id="R_MAR05757" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -304204,7 +304181,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05757">
+            <rdf:Description rdf:about="#R_MAR05757">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105761"/>
@@ -304215,14 +304192,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01369e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03089c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01369e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03089c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01369c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03089e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01369c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03089e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -304231,7 +304208,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05758" sboTerm="SBO:0000185" id="MAR05758" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05758" sboTerm="SBO:0000185" id="R_MAR05758" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -304240,7 +304217,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05758">
+            <rdf:Description rdf:about="#R_MAR05758">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105762"/>
@@ -304251,14 +304228,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01369e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02724c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01369e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02724c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01369c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02724e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01369c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02724e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -304267,7 +304244,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05759" sboTerm="SBO:0000185" id="MAR05759" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05759" sboTerm="SBO:0000185" id="R_MAR05759" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -304276,7 +304253,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05759">
+            <rdf:Description rdf:about="#R_MAR05759">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105763"/>
@@ -304287,14 +304264,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01369e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03101c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01369e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03101c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01369c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03101e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01369c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03101e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -304303,7 +304280,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05760" sboTerm="SBO:0000185" id="MAR05760" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05760" sboTerm="SBO:0000185" id="R_MAR05760" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -304312,7 +304289,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05760">
+            <rdf:Description rdf:about="#R_MAR05760">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ASNCYSNaEx"/>
@@ -304324,14 +304301,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01369e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01628c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01369e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01628c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01369c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01628e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01369c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01628e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -304341,7 +304318,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05761" sboTerm="SBO:0000185" id="MAR05761" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05761" sboTerm="SBO:0000185" id="R_MAR05761" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -304350,7 +304327,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05761">
+            <rdf:Description rdf:about="#R_MAR05761">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105764"/>
@@ -304361,14 +304338,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01369e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02360c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01369e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02360c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01369c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02360e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01369c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02360e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -304377,7 +304354,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05762" sboTerm="SBO:0000185" id="MAR05762" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05762" sboTerm="SBO:0000185" id="R_MAR05762" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -304386,7 +304363,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05762">
+            <rdf:Description rdf:about="#R_MAR05762">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105765"/>
@@ -304397,14 +304374,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01369e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02770c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01369e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02770c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01369c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02770e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01369c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02770e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -304413,7 +304390,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05763" sboTerm="SBO:0000185" id="MAR05763" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05763" sboTerm="SBO:0000185" id="R_MAR05763" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -304422,7 +304399,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05763">
+            <rdf:Description rdf:about="#R_MAR05763">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105766"/>
@@ -304433,14 +304410,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01369e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03135c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01369e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03135c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01369c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03135e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01369c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03135e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -304449,7 +304426,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05764" sboTerm="SBO:0000185" id="MAR05764" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05764" sboTerm="SBO:0000185" id="R_MAR05764" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -304458,7 +304435,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05764">
+            <rdf:Description rdf:about="#R_MAR05764">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ASNTHRNaEx"/>
@@ -304470,14 +304447,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01369e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02993c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01369e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02993c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01369c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02993e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01369c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02993e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -304487,7 +304464,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05765" sboTerm="SBO:0000185" id="MAR05765" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05765" sboTerm="SBO:0000185" id="R_MAR05765" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -304496,7 +304473,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05765">
+            <rdf:Description rdf:about="#R_MAR05765">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105767"/>
@@ -304507,14 +304484,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01369e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02136c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01369e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02136c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01369c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02136e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01369c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02136e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -304523,7 +304500,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05766" sboTerm="SBO:0000185" id="MAR05766" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05766" sboTerm="SBO:0000185" id="R_MAR05766" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -304532,7 +304509,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05766">
+            <rdf:Description rdf:about="#R_MAR05766">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105768"/>
@@ -304543,14 +304520,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01369e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02184c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01369e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02184c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01369c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02184e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01369c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02184e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -304559,7 +304536,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05767" sboTerm="SBO:0000185" id="MAR05767" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05767" sboTerm="SBO:0000185" id="R_MAR05767" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -304568,7 +304545,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05767">
+            <rdf:Description rdf:about="#R_MAR05767">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105769"/>
@@ -304579,14 +304556,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01986c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03135e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03135e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01986e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03135c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03135c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -304595,7 +304572,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05768" sboTerm="SBO:0000185" id="MAR05768" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05768" sboTerm="SBO:0000185" id="R_MAR05768" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -304604,7 +304581,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05768">
+            <rdf:Description rdf:about="#R_MAR05768">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105770"/>
@@ -304615,14 +304592,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01307c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03135e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01307c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03135e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01307e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03135c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01307e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03135c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -304631,7 +304608,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05769" sboTerm="SBO:0000185" id="MAR05769" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05769" sboTerm="SBO:0000185" id="R_MAR05769" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -304640,7 +304617,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05769">
+            <rdf:Description rdf:about="#R_MAR05769">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105771"/>
@@ -304651,14 +304628,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01975c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03135e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01975c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03135e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01975e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03135c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01975e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03135c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -304667,7 +304644,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05770" sboTerm="SBO:0000185" id="MAR05770" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05770" sboTerm="SBO:0000185" id="R_MAR05770" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -304676,7 +304653,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05770">
+            <rdf:Description rdf:about="#R_MAR05770">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105772"/>
@@ -304687,14 +304664,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02896c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03135e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02896c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03135e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02896e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03135c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02896e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03135c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -304703,7 +304680,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05771" sboTerm="SBO:0000185" id="MAR05771" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05771" sboTerm="SBO:0000185" id="R_MAR05771" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -304712,7 +304689,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05771">
+            <rdf:Description rdf:about="#R_MAR05771">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105773"/>
@@ -304723,14 +304700,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02471c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03135e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02471c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03135e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02471e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03135c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02471e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03135c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -304739,7 +304716,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05772" sboTerm="SBO:0000185" id="MAR05772" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05772" sboTerm="SBO:0000185" id="R_MAR05772" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -304748,7 +304725,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05772">
+            <rdf:Description rdf:about="#R_MAR05772">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105774"/>
@@ -304759,14 +304736,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03089c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03135e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03089c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03135e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03089e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03135c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03089e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03135c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -304775,7 +304752,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05773" sboTerm="SBO:0000185" id="MAR05773" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05773" sboTerm="SBO:0000185" id="R_MAR05773" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -304784,7 +304761,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05773">
+            <rdf:Description rdf:about="#R_MAR05773">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105775"/>
@@ -304795,14 +304772,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02724c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03135e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02724c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03135e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02724e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03135c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02724e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03135c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -304811,7 +304788,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05774" sboTerm="SBO:0000185" id="MAR05774" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05774" sboTerm="SBO:0000185" id="R_MAR05774" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -304820,7 +304797,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05774">
+            <rdf:Description rdf:about="#R_MAR05774">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105776"/>
@@ -304831,14 +304808,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03101c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03135e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03101c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03135e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03101e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03135c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03101e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03135c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -304847,7 +304824,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05775" sboTerm="SBO:0000185" id="MAR05775" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05775" sboTerm="SBO:0000185" id="R_MAR05775" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -304856,7 +304833,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05775">
+            <rdf:Description rdf:about="#R_MAR05775">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105777"/>
@@ -304867,14 +304844,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01628c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03135e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01628c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03135e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01628e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03135c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01628e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03135c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -304883,7 +304860,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05776" sboTerm="SBO:0000185" id="MAR05776" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05776" sboTerm="SBO:0000185" id="R_MAR05776" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -304892,7 +304869,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05776">
+            <rdf:Description rdf:about="#R_MAR05776">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105778"/>
@@ -304903,14 +304880,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02360c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03135e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02360c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03135e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02360e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03135c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02360e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03135c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -304919,7 +304896,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05777" sboTerm="SBO:0000185" id="MAR05777" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05777" sboTerm="SBO:0000185" id="R_MAR05777" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -304928,7 +304905,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05777">
+            <rdf:Description rdf:about="#R_MAR05777">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105779"/>
@@ -304939,14 +304916,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02770c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03135e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02770c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03135e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02770e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03135c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02770e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03135c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -304955,7 +304932,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05778" sboTerm="SBO:0000185" id="MAR05778" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05778" sboTerm="SBO:0000185" id="R_MAR05778" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -304964,7 +304941,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05778">
+            <rdf:Description rdf:about="#R_MAR05778">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105780"/>
@@ -304975,14 +304952,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01369c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03135e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01369c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03135e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01369e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03135c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01369e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03135c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -304991,7 +304968,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05779" sboTerm="SBO:0000185" id="MAR05779" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05779" sboTerm="SBO:0000185" id="R_MAR05779" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -305000,7 +304977,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05779">
+            <rdf:Description rdf:about="#R_MAR05779">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105781"/>
@@ -305011,14 +304988,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02993c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03135e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02993c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03135e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02993e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03135c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02993e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03135c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -305027,7 +305004,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05780" sboTerm="SBO:0000185" id="MAR05780" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05780" sboTerm="SBO:0000185" id="R_MAR05780" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -305036,7 +305013,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05780">
+            <rdf:Description rdf:about="#R_MAR05780">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105782"/>
@@ -305047,14 +305024,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02136c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03135e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02136c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03135e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02136e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03135c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02136e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03135c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -305063,7 +305040,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05781" sboTerm="SBO:0000185" id="MAR05781" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05781" sboTerm="SBO:0000185" id="R_MAR05781" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -305072,7 +305049,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05781">
+            <rdf:Description rdf:about="#R_MAR05781">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105783"/>
@@ -305083,14 +305060,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02184c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03135e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02184c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03135e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02184e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03135c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02184e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03135c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -305099,7 +305076,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05782" sboTerm="SBO:0000185" id="MAR05782" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05782" sboTerm="SBO:0000185" id="R_MAR05782" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -305108,7 +305085,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05782">
+            <rdf:Description rdf:about="#R_MAR05782">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105784"/>
@@ -305119,14 +305096,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01986c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02993e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02993e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01986e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02993c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02993c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -305135,7 +305112,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05783" sboTerm="SBO:0000185" id="MAR05783" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05783" sboTerm="SBO:0000185" id="R_MAR05783" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -305144,7 +305121,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05783">
+            <rdf:Description rdf:about="#R_MAR05783">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/THRALANaEx"/>
@@ -305156,14 +305133,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01307c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02993e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01307c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02993e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01307e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02993c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01307e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02993c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -305173,7 +305150,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05784" sboTerm="SBO:0000185" id="MAR05784" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05784" sboTerm="SBO:0000185" id="R_MAR05784" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -305182,7 +305159,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05784">
+            <rdf:Description rdf:about="#R_MAR05784">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/THRGLNNaEx"/>
@@ -305194,14 +305171,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01975c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02993e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01975c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02993e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01975e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02993c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01975e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02993c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -305211,7 +305188,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05785" sboTerm="SBO:0000185" id="MAR05785" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05785" sboTerm="SBO:0000185" id="R_MAR05785" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -305220,7 +305197,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05785">
+            <rdf:Description rdf:about="#R_MAR05785">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/THRSERNaEx"/>
@@ -305232,14 +305209,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02896c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02993e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02896c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02993e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02896e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02993c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02896e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02993c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -305249,7 +305226,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05786" sboTerm="SBO:0000185" id="MAR05786" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05786" sboTerm="SBO:0000185" id="R_MAR05786" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -305258,7 +305235,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05786">
+            <rdf:Description rdf:about="#R_MAR05786">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105785"/>
@@ -305269,14 +305246,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02471c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02993e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02471c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02993e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02471e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02993c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02471e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02993c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -305285,7 +305262,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05787" sboTerm="SBO:0000185" id="MAR05787" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05787" sboTerm="SBO:0000185" id="R_MAR05787" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -305294,7 +305271,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05787">
+            <rdf:Description rdf:about="#R_MAR05787">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105786"/>
@@ -305305,14 +305282,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02993e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03089c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02993e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03089c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02993c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03089e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02993c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03089e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -305321,7 +305298,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05788" sboTerm="SBO:0000185" id="MAR05788" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05788" sboTerm="SBO:0000185" id="R_MAR05788" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -305330,7 +305307,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05788">
+            <rdf:Description rdf:about="#R_MAR05788">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105787"/>
@@ -305341,14 +305318,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02724c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02993e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02724c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02993e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02724e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02993c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02724e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02993c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -305357,7 +305334,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05789" sboTerm="SBO:0000185" id="MAR05789" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05789" sboTerm="SBO:0000185" id="R_MAR05789" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -305366,7 +305343,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05789">
+            <rdf:Description rdf:about="#R_MAR05789">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105788"/>
@@ -305377,14 +305354,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02993e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03101c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02993e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03101c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02993c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03101e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02993c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03101e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -305393,7 +305370,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05790" sboTerm="SBO:0000185" id="MAR05790" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05790" sboTerm="SBO:0000185" id="R_MAR05790" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -305402,7 +305379,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05790">
+            <rdf:Description rdf:about="#R_MAR05790">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/THRCYSNaEx"/>
@@ -305414,14 +305391,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01628c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02993e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01628c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02993e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01628e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02993c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01628e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02993c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -305431,7 +305408,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05791" sboTerm="SBO:0000185" id="MAR05791" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05791" sboTerm="SBO:0000185" id="R_MAR05791" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -305440,7 +305417,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05791">
+            <rdf:Description rdf:about="#R_MAR05791">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105789"/>
@@ -305451,14 +305428,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02360c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02993e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02360c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02993e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02360e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02993c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02360e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02993c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -305467,7 +305444,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05792" sboTerm="SBO:0000185" id="MAR05792" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05792" sboTerm="SBO:0000185" id="R_MAR05792" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -305476,7 +305453,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05792">
+            <rdf:Description rdf:about="#R_MAR05792">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105790"/>
@@ -305487,14 +305464,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02770c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02993e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02770c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02993e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02770e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02993c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02770e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02993c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -305503,7 +305480,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05793" sboTerm="SBO:0000185" id="MAR05793" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05793" sboTerm="SBO:0000185" id="R_MAR05793" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -305512,7 +305489,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05793">
+            <rdf:Description rdf:about="#R_MAR05793">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/THRASNNaEx"/>
@@ -305524,14 +305501,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01369c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02993e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01369c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02993e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01369e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02993c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01369e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02993c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -305541,7 +305518,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05794" sboTerm="SBO:0000185" id="MAR05794" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05794" sboTerm="SBO:0000185" id="R_MAR05794" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -305550,7 +305527,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05794">
+            <rdf:Description rdf:about="#R_MAR05794">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105791"/>
@@ -305561,14 +305538,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02993e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03135c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02993e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03135c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02993c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03135e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02993c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03135e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -305577,7 +305554,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05795" sboTerm="SBO:0000185" id="MAR05795" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05795" sboTerm="SBO:0000185" id="R_MAR05795" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -305586,7 +305563,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05795">
+            <rdf:Description rdf:about="#R_MAR05795">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105792"/>
@@ -305597,14 +305574,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02136c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02993e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02136c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02993e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02136e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02993c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02136e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02993c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -305613,7 +305590,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05796" sboTerm="SBO:0000185" id="MAR05796" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05796" sboTerm="SBO:0000185" id="R_MAR05796" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -305622,7 +305599,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05796">
+            <rdf:Description rdf:about="#R_MAR05796">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105793"/>
@@ -305633,14 +305610,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02184c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02993e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02184c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02993e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02184e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02993c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02184e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02993c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -305649,7 +305626,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05797" sboTerm="SBO:0000185" id="MAR05797" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05797" sboTerm="SBO:0000185" id="R_MAR05797" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -305658,7 +305635,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05797">
+            <rdf:Description rdf:about="#R_MAR05797">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105794"/>
@@ -305669,14 +305646,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01986c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02136e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02136e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01986e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02136c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02136c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -305685,7 +305662,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05798" sboTerm="SBO:0000185" id="MAR05798" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05798" sboTerm="SBO:0000185" id="R_MAR05798" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -305694,7 +305671,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05798">
+            <rdf:Description rdf:about="#R_MAR05798">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105795"/>
@@ -305705,14 +305682,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01307c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02136e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01307c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02136e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01307e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02136c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01307e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02136c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -305721,7 +305698,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05799" sboTerm="SBO:0000185" id="MAR05799" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05799" sboTerm="SBO:0000185" id="R_MAR05799" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -305730,7 +305707,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05799">
+            <rdf:Description rdf:about="#R_MAR05799">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105796"/>
@@ -305741,14 +305718,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01975c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02136e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01975c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02136e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01975e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02136c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01975e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02136c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -305757,7 +305734,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05800" sboTerm="SBO:0000185" id="MAR05800" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05800" sboTerm="SBO:0000185" id="R_MAR05800" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -305766,7 +305743,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05800">
+            <rdf:Description rdf:about="#R_MAR05800">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105797"/>
@@ -305777,14 +305754,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02136e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02896c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02136e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02896c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02136c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02896e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02136c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02896e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -305793,7 +305770,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05801" sboTerm="SBO:0000185" id="MAR05801" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05801" sboTerm="SBO:0000185" id="R_MAR05801" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -305802,7 +305779,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05801">
+            <rdf:Description rdf:about="#R_MAR05801">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105798"/>
@@ -305813,14 +305790,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02136e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02471c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02136e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02471c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02136c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02471e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02136c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02471e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -305829,7 +305806,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05802" sboTerm="SBO:0000185" id="MAR05802" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05802" sboTerm="SBO:0000185" id="R_MAR05802" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -305838,7 +305815,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05802">
+            <rdf:Description rdf:about="#R_MAR05802">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105799"/>
@@ -305849,14 +305826,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02136e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03089c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02136e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03089c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02136c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03089e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02136c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03089e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -305865,7 +305842,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05803" sboTerm="SBO:0000185" id="MAR05803" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05803" sboTerm="SBO:0000185" id="R_MAR05803" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -305874,7 +305851,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05803">
+            <rdf:Description rdf:about="#R_MAR05803">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105800"/>
@@ -305885,14 +305862,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02136e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02724c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02136e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02724c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02136c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02724e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02136c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02724e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -305901,7 +305878,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05804" sboTerm="SBO:0000185" id="MAR05804" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05804" sboTerm="SBO:0000185" id="R_MAR05804" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -305910,7 +305887,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05804">
+            <rdf:Description rdf:about="#R_MAR05804">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105801"/>
@@ -305921,14 +305898,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02136e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03101c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02136e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03101c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02136c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03101e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02136c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03101e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -305937,7 +305914,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05805" sboTerm="SBO:0000185" id="MAR05805" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05805" sboTerm="SBO:0000185" id="R_MAR05805" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -305946,7 +305923,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05805">
+            <rdf:Description rdf:about="#R_MAR05805">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105802"/>
@@ -305957,14 +305934,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01628c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02136e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01628c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02136e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01628e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02136c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01628e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02136c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -305973,7 +305950,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05806" sboTerm="SBO:0000185" id="MAR05806" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05806" sboTerm="SBO:0000185" id="R_MAR05806" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -305982,7 +305959,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05806">
+            <rdf:Description rdf:about="#R_MAR05806">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105803"/>
@@ -305993,14 +305970,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02136e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02360c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02136e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02360c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02136c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02360e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02136c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02360e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -306009,7 +305986,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05807" sboTerm="SBO:0000185" id="MAR05807" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05807" sboTerm="SBO:0000185" id="R_MAR05807" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -306018,7 +305995,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05807">
+            <rdf:Description rdf:about="#R_MAR05807">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105804"/>
@@ -306029,14 +306006,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02136e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02770c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02136e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02770c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02136c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02770e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02136c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02770e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -306045,7 +306022,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05808" sboTerm="SBO:0000185" id="MAR05808" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05808" sboTerm="SBO:0000185" id="R_MAR05808" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -306054,7 +306031,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05808">
+            <rdf:Description rdf:about="#R_MAR05808">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105805"/>
@@ -306065,14 +306042,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01369c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02136e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01369c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02136e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01369e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02136c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01369e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02136c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -306081,7 +306058,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05809" sboTerm="SBO:0000185" id="MAR05809" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05809" sboTerm="SBO:0000185" id="R_MAR05809" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -306090,7 +306067,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05809">
+            <rdf:Description rdf:about="#R_MAR05809">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105806"/>
@@ -306101,14 +306078,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02136e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03135c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02136e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03135c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02136c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03135e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02136c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03135e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -306117,7 +306094,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05810" sboTerm="SBO:0000185" id="MAR05810" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05810" sboTerm="SBO:0000185" id="R_MAR05810" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -306126,7 +306103,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05810">
+            <rdf:Description rdf:about="#R_MAR05810">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105807"/>
@@ -306137,14 +306114,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02136e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02993c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02136e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02993c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02136c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02993e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02136c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02993e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -306153,7 +306130,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05811" sboTerm="SBO:0000185" id="MAR05811" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05811" sboTerm="SBO:0000185" id="R_MAR05811" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -306162,7 +306139,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05811">
+            <rdf:Description rdf:about="#R_MAR05811">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105808"/>
@@ -306173,14 +306150,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02136e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02184c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02136e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02184c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02136c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02184e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02136c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02184e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -306189,7 +306166,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05812" sboTerm="SBO:0000185" id="MAR05812" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05812" sboTerm="SBO:0000185" id="R_MAR05812" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -306198,7 +306175,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05812">
+            <rdf:Description rdf:about="#R_MAR05812">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105809"/>
@@ -306209,14 +306186,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01986c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02184e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02184e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01986e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02184c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02184c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -306225,7 +306202,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05813" sboTerm="SBO:0000185" id="MAR05813" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05813" sboTerm="SBO:0000185" id="R_MAR05813" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -306234,7 +306211,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05813">
+            <rdf:Description rdf:about="#R_MAR05813">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105810"/>
@@ -306245,14 +306222,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01307c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02184e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01307c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02184e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01307e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02184c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01307e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02184c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -306261,7 +306238,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05814" sboTerm="SBO:0000185" id="MAR05814" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05814" sboTerm="SBO:0000185" id="R_MAR05814" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -306270,7 +306247,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05814">
+            <rdf:Description rdf:about="#R_MAR05814">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105811"/>
@@ -306281,14 +306258,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01975c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02184e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01975c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02184e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01975e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02184c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01975e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02184c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -306297,7 +306274,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05815" sboTerm="SBO:0000185" id="MAR05815" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05815" sboTerm="SBO:0000185" id="R_MAR05815" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -306306,7 +306283,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05815">
+            <rdf:Description rdf:about="#R_MAR05815">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105812"/>
@@ -306317,14 +306294,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02184e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02896c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02184e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02896c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02184c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02896e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02184c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02896e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -306333,7 +306310,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05816" sboTerm="SBO:0000185" id="MAR05816" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05816" sboTerm="SBO:0000185" id="R_MAR05816" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -306342,7 +306319,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05816">
+            <rdf:Description rdf:about="#R_MAR05816">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105813"/>
@@ -306353,14 +306330,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02184e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02471c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02184e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02471c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02184c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02471e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02184c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02471e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -306369,7 +306346,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05817" sboTerm="SBO:0000185" id="MAR05817" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05817" sboTerm="SBO:0000185" id="R_MAR05817" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -306378,7 +306355,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05817">
+            <rdf:Description rdf:about="#R_MAR05817">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105814"/>
@@ -306389,14 +306366,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02184e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03089c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02184e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03089c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02184c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03089e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02184c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03089e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -306405,7 +306382,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05818" sboTerm="SBO:0000185" id="MAR05818" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05818" sboTerm="SBO:0000185" id="R_MAR05818" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -306414,7 +306391,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05818">
+            <rdf:Description rdf:about="#R_MAR05818">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105815"/>
@@ -306425,14 +306402,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02184e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02724c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02184e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02724c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02184c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02724e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02184c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02724e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -306441,7 +306418,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05819" sboTerm="SBO:0000185" id="MAR05819" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05819" sboTerm="SBO:0000185" id="R_MAR05819" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -306450,7 +306427,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05819">
+            <rdf:Description rdf:about="#R_MAR05819">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105816"/>
@@ -306461,14 +306438,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02184e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03101c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02184e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03101c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02184c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03101e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02184c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03101e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -306477,7 +306454,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05820" sboTerm="SBO:0000185" id="MAR05820" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05820" sboTerm="SBO:0000185" id="R_MAR05820" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -306486,7 +306463,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05820">
+            <rdf:Description rdf:about="#R_MAR05820">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105817"/>
@@ -306497,14 +306474,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01628c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02184e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01628c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02184e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01628e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02184c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01628e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02184c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -306513,7 +306490,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05821" sboTerm="SBO:0000185" id="MAR05821" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05821" sboTerm="SBO:0000185" id="R_MAR05821" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -306522,7 +306499,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05821">
+            <rdf:Description rdf:about="#R_MAR05821">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105818"/>
@@ -306533,14 +306510,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02184e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02360c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02184e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02360c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02184c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02360e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02184c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02360e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -306549,7 +306526,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05822" sboTerm="SBO:0000185" id="MAR05822" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05822" sboTerm="SBO:0000185" id="R_MAR05822" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -306558,7 +306535,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05822">
+            <rdf:Description rdf:about="#R_MAR05822">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105819"/>
@@ -306569,14 +306546,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02184e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02770c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02184e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02770c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02184c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02770e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02184c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02770e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -306585,7 +306562,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05823" sboTerm="SBO:0000185" id="MAR05823" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05823" sboTerm="SBO:0000185" id="R_MAR05823" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -306594,7 +306571,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05823">
+            <rdf:Description rdf:about="#R_MAR05823">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105820"/>
@@ -306605,14 +306582,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01369c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02184e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01369c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02184e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01369e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02184c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01369e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02184c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -306621,7 +306598,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05824" sboTerm="SBO:0000185" id="MAR05824" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05824" sboTerm="SBO:0000185" id="R_MAR05824" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -306630,7 +306607,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05824">
+            <rdf:Description rdf:about="#R_MAR05824">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105821"/>
@@ -306641,14 +306618,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02184e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03135c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02184e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03135c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02184c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03135e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02184c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03135e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -306657,7 +306634,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05825" sboTerm="SBO:0000185" id="MAR05825" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05825" sboTerm="SBO:0000185" id="R_MAR05825" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -306666,7 +306643,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05825">
+            <rdf:Description rdf:about="#R_MAR05825">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105822"/>
@@ -306677,14 +306654,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02184e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02993c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02184e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02993c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02184c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02993e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02184c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02993e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -306693,7 +306670,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05826" sboTerm="SBO:0000185" id="MAR05826" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05826" sboTerm="SBO:0000185" id="R_MAR05826" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -306702,7 +306679,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05826">
+            <rdf:Description rdf:about="#R_MAR05826">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105823"/>
@@ -306713,14 +306690,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02136c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02184e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02136c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02184e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02136e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02184c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02136e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02184c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -306729,7 +306706,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05827" sboTerm="SBO:0000185" id="MAR05827" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05827" sboTerm="SBO:0000185" id="R_MAR05827" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -306738,7 +306715,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05827">
+            <rdf:Description rdf:about="#R_MAR05827">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105824"/>
@@ -306749,14 +306726,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01986e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02426c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02426c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01986c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02426e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02426e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -306765,7 +306742,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05828" sboTerm="SBO:0000185" id="MAR05828" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05828" sboTerm="SBO:0000185" id="R_MAR05828" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -306774,7 +306751,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05828">
+            <rdf:Description rdf:about="#R_MAR05828">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105825"/>
@@ -306785,14 +306762,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01365c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01986e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01365c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01365e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01986c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01365e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -306801,7 +306778,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05829" sboTerm="SBO:0000185" id="MAR05829" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05829" sboTerm="SBO:0000185" id="R_MAR05829" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -306810,7 +306787,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05829">
+            <rdf:Description rdf:about="#R_MAR05829">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105826"/>
@@ -306821,14 +306798,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01986e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02658c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02658c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01986c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02658e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02658e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -306837,7 +306814,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05830" sboTerm="SBO:0000185" id="MAR05830" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05830" sboTerm="SBO:0000185" id="R_MAR05830" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -306846,7 +306823,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05830">
+            <rdf:Description rdf:about="#R_MAR05830">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105827"/>
@@ -306857,14 +306834,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01986e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02125c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02125c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01986c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02125e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02125e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -306873,7 +306850,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05831" sboTerm="SBO:0000185" id="MAR05831" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05831" sboTerm="SBO:0000185" id="R_MAR05831" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -306882,7 +306859,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05831">
+            <rdf:Description rdf:about="#R_MAR05831">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105828"/>
@@ -306893,14 +306870,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01588c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01986e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01588c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01588e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01986c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01588e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -306909,7 +306886,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05832" sboTerm="SBO:0000185" id="MAR05832" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05832" sboTerm="SBO:0000185" id="R_MAR05832" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -306918,7 +306895,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05832">
+            <rdf:Description rdf:about="#R_MAR05832">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105829"/>
@@ -306929,14 +306906,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01307e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02426c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01307e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02426c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01307c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02426e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01307c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02426e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -306945,7 +306922,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05833" sboTerm="SBO:0000185" id="MAR05833" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05833" sboTerm="SBO:0000185" id="R_MAR05833" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -306954,7 +306931,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05833">
+            <rdf:Description rdf:about="#R_MAR05833">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105830"/>
@@ -306965,14 +306942,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01307e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01365c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01307e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01365c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01307c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01365e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01307c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01365e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -306981,7 +306958,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05834" sboTerm="SBO:0000185" id="MAR05834" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05834" sboTerm="SBO:0000185" id="R_MAR05834" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -306990,7 +306967,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05834">
+            <rdf:Description rdf:about="#R_MAR05834">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105831"/>
@@ -307001,14 +306978,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01307e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02658c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01307e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02658c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01307c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02658e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01307c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02658e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -307017,7 +306994,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05835" sboTerm="SBO:0000185" id="MAR05835" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05835" sboTerm="SBO:0000185" id="R_MAR05835" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -307026,7 +307003,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05835">
+            <rdf:Description rdf:about="#R_MAR05835">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105832"/>
@@ -307037,14 +307014,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01307e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02125c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01307e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02125c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01307c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02125e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01307c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02125e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -307053,7 +307030,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05836" sboTerm="SBO:0000185" id="MAR05836" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05836" sboTerm="SBO:0000185" id="R_MAR05836" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -307062,7 +307039,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05836">
+            <rdf:Description rdf:about="#R_MAR05836">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105833"/>
@@ -307073,14 +307050,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01307e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01588c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01307e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01588c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01307c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01588e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01307c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01588e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -307089,7 +307066,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05837" sboTerm="SBO:0000185" id="MAR05837" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05837" sboTerm="SBO:0000185" id="R_MAR05837" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -307098,7 +307075,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05837">
+            <rdf:Description rdf:about="#R_MAR05837">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105834"/>
@@ -307109,14 +307086,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01975e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02426c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01975e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02426c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01975c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02426e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01975c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02426e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -307125,7 +307102,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05838" sboTerm="SBO:0000185" id="MAR05838" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05838" sboTerm="SBO:0000185" id="R_MAR05838" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -307134,7 +307111,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05838">
+            <rdf:Description rdf:about="#R_MAR05838">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105835"/>
@@ -307145,14 +307122,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01365c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01975e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01365c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01975e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01365e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01975c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01365e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01975c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -307161,7 +307138,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05839" sboTerm="SBO:0000185" id="MAR05839" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05839" sboTerm="SBO:0000185" id="R_MAR05839" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -307170,7 +307147,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05839">
+            <rdf:Description rdf:about="#R_MAR05839">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105836"/>
@@ -307181,14 +307158,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01975e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02658c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01975e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02658c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01975c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02658e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01975c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02658e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -307197,7 +307174,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05840" sboTerm="SBO:0000185" id="MAR05840" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05840" sboTerm="SBO:0000185" id="R_MAR05840" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -307206,7 +307183,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05840">
+            <rdf:Description rdf:about="#R_MAR05840">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105837"/>
@@ -307217,14 +307194,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01975e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02125c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01975e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02125c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01975c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02125e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01975c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02125e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -307233,7 +307210,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05841" sboTerm="SBO:0000185" id="MAR05841" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05841" sboTerm="SBO:0000185" id="R_MAR05841" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -307242,7 +307219,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05841">
+            <rdf:Description rdf:about="#R_MAR05841">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105838"/>
@@ -307253,14 +307230,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01588c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01975e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01588c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01975e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01588e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01975c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01588e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01975c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -307269,7 +307246,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05842" sboTerm="SBO:0000185" id="MAR05842" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05842" sboTerm="SBO:0000185" id="R_MAR05842" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -307278,7 +307255,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05842">
+            <rdf:Description rdf:about="#R_MAR05842">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/SERLYSNaex"/>
@@ -307290,14 +307267,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02426c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02896e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02426c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02896e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02426e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02896c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02426e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02896c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -307306,7 +307283,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05843" sboTerm="SBO:0000185" id="MAR05843" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05843" sboTerm="SBO:0000185" id="R_MAR05843" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -307315,7 +307292,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05843">
+            <rdf:Description rdf:about="#R_MAR05843">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105839"/>
@@ -307326,14 +307303,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01365c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02896e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01365c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02896e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01365e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02896c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01365e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02896c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -307342,7 +307319,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05844" sboTerm="SBO:0000185" id="MAR05844" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05844" sboTerm="SBO:0000185" id="R_MAR05844" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -307351,7 +307328,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05844">
+            <rdf:Description rdf:about="#R_MAR05844">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105840"/>
@@ -307362,14 +307339,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02658c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02896e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02658c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02896e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02658e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02896c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02658e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02896c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -307378,7 +307355,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05845" sboTerm="SBO:0000185" id="MAR05845" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05845" sboTerm="SBO:0000185" id="R_MAR05845" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -307387,7 +307364,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05845">
+            <rdf:Description rdf:about="#R_MAR05845">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105841"/>
@@ -307398,14 +307375,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02125c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02896e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02125c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02896e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02125e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02896c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02125e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02896c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -307414,7 +307391,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05846" sboTerm="SBO:0000185" id="MAR05846" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05846" sboTerm="SBO:0000185" id="R_MAR05846" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -307423,7 +307400,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05846">
+            <rdf:Description rdf:about="#R_MAR05846">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105842"/>
@@ -307434,14 +307411,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01588c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02896e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01588c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02896e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01588e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02896c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01588e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02896c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -307450,7 +307427,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05847" sboTerm="SBO:0000185" id="MAR05847" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05847" sboTerm="SBO:0000185" id="R_MAR05847" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -307459,7 +307436,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05847">
+            <rdf:Description rdf:about="#R_MAR05847">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105843"/>
@@ -307470,14 +307447,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02426c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02471e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02426c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02471e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02426e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02471c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02426e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02471c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -307486,7 +307463,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05848" sboTerm="SBO:0000185" id="MAR05848" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05848" sboTerm="SBO:0000185" id="R_MAR05848" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -307495,7 +307472,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05848">
+            <rdf:Description rdf:about="#R_MAR05848">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105844"/>
@@ -307506,14 +307483,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01365c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02471e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01365c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02471e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01365e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02471c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01365e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02471c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -307522,7 +307499,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05849" sboTerm="SBO:0000185" id="MAR05849" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05849" sboTerm="SBO:0000185" id="R_MAR05849" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -307531,7 +307508,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05849">
+            <rdf:Description rdf:about="#R_MAR05849">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105845"/>
@@ -307542,14 +307519,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02471e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02658c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02471e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02658c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02471c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02658e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02471c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02658e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -307558,7 +307535,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05850" sboTerm="SBO:0000185" id="MAR05850" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05850" sboTerm="SBO:0000185" id="R_MAR05850" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -307567,7 +307544,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05850">
+            <rdf:Description rdf:about="#R_MAR05850">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105846"/>
@@ -307578,14 +307555,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02125c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02471e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02125c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02471e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02125e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02471c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02125e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02471c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -307594,7 +307571,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05851" sboTerm="SBO:0000185" id="MAR05851" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05851" sboTerm="SBO:0000185" id="R_MAR05851" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -307603,7 +307580,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05851">
+            <rdf:Description rdf:about="#R_MAR05851">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105847"/>
@@ -307614,14 +307591,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01588c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02471e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01588c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02471e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01588e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02471c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01588e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02471c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -307630,7 +307607,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05852" sboTerm="SBO:0000185" id="MAR05852" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05852" sboTerm="SBO:0000185" id="R_MAR05852" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -307639,7 +307616,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05852">
+            <rdf:Description rdf:about="#R_MAR05852">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105848"/>
@@ -307650,14 +307627,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02426c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03089e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02426c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03089e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02426e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03089c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02426e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03089c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -307666,7 +307643,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05853" sboTerm="SBO:0000185" id="MAR05853" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05853" sboTerm="SBO:0000185" id="R_MAR05853" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -307675,7 +307652,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05853">
+            <rdf:Description rdf:about="#R_MAR05853">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105849"/>
@@ -307686,14 +307663,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01365c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03089e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01365c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03089e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01365e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03089c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01365e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03089c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -307702,7 +307679,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05854" sboTerm="SBO:0000185" id="MAR05854" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05854" sboTerm="SBO:0000185" id="R_MAR05854" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -307711,7 +307688,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05854">
+            <rdf:Description rdf:about="#R_MAR05854">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105850"/>
@@ -307722,14 +307699,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02658c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03089e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02658c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03089e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02658e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03089c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02658e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03089c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -307738,7 +307715,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05855" sboTerm="SBO:0000185" id="MAR05855" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05855" sboTerm="SBO:0000185" id="R_MAR05855" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -307747,7 +307724,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05855">
+            <rdf:Description rdf:about="#R_MAR05855">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105851"/>
@@ -307758,14 +307735,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02125c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03089e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02125c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03089e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02125e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03089c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02125e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03089c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -307774,7 +307751,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05856" sboTerm="SBO:0000185" id="MAR05856" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05856" sboTerm="SBO:0000185" id="R_MAR05856" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -307783,7 +307760,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05856">
+            <rdf:Description rdf:about="#R_MAR05856">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105852"/>
@@ -307794,14 +307771,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01588c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03089e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01588c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03089e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01588e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03089c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01588e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03089c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -307810,7 +307787,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05857" sboTerm="SBO:0000185" id="MAR05857" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05857" sboTerm="SBO:0000185" id="R_MAR05857" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -307819,7 +307796,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05857">
+            <rdf:Description rdf:about="#R_MAR05857">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105853"/>
@@ -307830,14 +307807,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02426c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02724e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02426c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02724e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02426e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02724c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02426e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02724c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -307846,7 +307823,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05858" sboTerm="SBO:0000185" id="MAR05858" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05858" sboTerm="SBO:0000185" id="R_MAR05858" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -307855,7 +307832,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05858">
+            <rdf:Description rdf:about="#R_MAR05858">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105854"/>
@@ -307866,14 +307843,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01365c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02724e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01365c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02724e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01365e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02724c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01365e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02724c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -307882,7 +307859,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05859" sboTerm="SBO:0000185" id="MAR05859" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05859" sboTerm="SBO:0000185" id="R_MAR05859" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -307891,7 +307868,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05859">
+            <rdf:Description rdf:about="#R_MAR05859">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105855"/>
@@ -307902,14 +307879,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02658c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02724e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02658c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02724e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02658e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02724c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02658e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02724c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -307918,7 +307895,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05860" sboTerm="SBO:0000185" id="MAR05860" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05860" sboTerm="SBO:0000185" id="R_MAR05860" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -307927,7 +307904,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05860">
+            <rdf:Description rdf:about="#R_MAR05860">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105856"/>
@@ -307938,14 +307915,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02125c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02724e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02125c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02724e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02125e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02724c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02125e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02724c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -307954,7 +307931,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05861" sboTerm="SBO:0000185" id="MAR05861" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05861" sboTerm="SBO:0000185" id="R_MAR05861" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -307963,7 +307940,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05861">
+            <rdf:Description rdf:about="#R_MAR05861">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105857"/>
@@ -307974,14 +307951,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01588c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02724e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01588c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02724e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01588e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02724c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01588e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02724c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -307990,7 +307967,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05862" sboTerm="SBO:0000185" id="MAR05862" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05862" sboTerm="SBO:0000185" id="R_MAR05862" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -307999,7 +307976,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05862">
+            <rdf:Description rdf:about="#R_MAR05862">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105858"/>
@@ -308010,14 +307987,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02426c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03101e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02426c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03101e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02426e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03101c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02426e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03101c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -308026,7 +308003,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05863" sboTerm="SBO:0000185" id="MAR05863" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05863" sboTerm="SBO:0000185" id="R_MAR05863" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -308035,7 +308012,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05863">
+            <rdf:Description rdf:about="#R_MAR05863">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105859"/>
@@ -308046,14 +308023,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01365c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03101e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01365c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03101e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01365e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03101c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01365e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03101c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -308062,7 +308039,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05864" sboTerm="SBO:0000185" id="MAR05864" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05864" sboTerm="SBO:0000185" id="R_MAR05864" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -308071,7 +308048,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05864">
+            <rdf:Description rdf:about="#R_MAR05864">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105860"/>
@@ -308082,14 +308059,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02658c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03101e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02658c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03101e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02658e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03101c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02658e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03101c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -308098,7 +308075,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05865" sboTerm="SBO:0000185" id="MAR05865" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05865" sboTerm="SBO:0000185" id="R_MAR05865" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -308107,7 +308084,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05865">
+            <rdf:Description rdf:about="#R_MAR05865">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105861"/>
@@ -308118,14 +308095,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02125c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03101e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02125c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03101e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02125e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03101c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02125e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03101c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -308134,7 +308111,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05866" sboTerm="SBO:0000185" id="MAR05866" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05866" sboTerm="SBO:0000185" id="R_MAR05866" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -308143,7 +308120,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05866">
+            <rdf:Description rdf:about="#R_MAR05866">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105862"/>
@@ -308154,14 +308131,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01588c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03101e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01588c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03101e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01588e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03101c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01588e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03101c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -308170,7 +308147,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05867" sboTerm="SBO:0000185" id="MAR05867" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05867" sboTerm="SBO:0000185" id="R_MAR05867" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -308179,7 +308156,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05867">
+            <rdf:Description rdf:about="#R_MAR05867">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105863"/>
@@ -308190,14 +308167,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01628e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02426c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01628e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02426c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01628c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02426e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01628c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02426e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -308206,7 +308183,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05868" sboTerm="SBO:0000185" id="MAR05868" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05868" sboTerm="SBO:0000185" id="R_MAR05868" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -308215,7 +308192,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05868">
+            <rdf:Description rdf:about="#R_MAR05868">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105864"/>
@@ -308226,14 +308203,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01365c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01628e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01365c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01628e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01365e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01628c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01365e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01628c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -308242,7 +308219,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05869" sboTerm="SBO:0000185" id="MAR05869" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05869" sboTerm="SBO:0000185" id="R_MAR05869" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -308251,7 +308228,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05869">
+            <rdf:Description rdf:about="#R_MAR05869">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105865"/>
@@ -308262,14 +308239,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01628e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02658c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01628e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02658c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01628c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02658e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01628c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02658e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -308278,7 +308255,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05870" sboTerm="SBO:0000185" id="MAR05870" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05870" sboTerm="SBO:0000185" id="R_MAR05870" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -308287,7 +308264,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05870">
+            <rdf:Description rdf:about="#R_MAR05870">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105866"/>
@@ -308298,14 +308275,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01628e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02125c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01628e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02125c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01628c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02125e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01628c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02125e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -308314,7 +308291,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05871" sboTerm="SBO:0000185" id="MAR05871" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05871" sboTerm="SBO:0000185" id="R_MAR05871" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -308323,7 +308300,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05871">
+            <rdf:Description rdf:about="#R_MAR05871">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105867"/>
@@ -308334,14 +308311,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01588c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01628e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01588c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01628e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01588e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01628c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01588e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01628c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -308350,7 +308327,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05872" sboTerm="SBO:0000185" id="MAR05872" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05872" sboTerm="SBO:0000185" id="R_MAR05872" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -308359,7 +308336,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05872">
+            <rdf:Description rdf:about="#R_MAR05872">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105868"/>
@@ -308370,14 +308347,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02360e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02426c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02360e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02426c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02360c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02426e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02360c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02426e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -308386,7 +308363,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05873" sboTerm="SBO:0000185" id="MAR05873" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05873" sboTerm="SBO:0000185" id="R_MAR05873" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -308395,7 +308372,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05873">
+            <rdf:Description rdf:about="#R_MAR05873">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105869"/>
@@ -308406,14 +308383,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01365c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02360e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01365c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02360e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01365e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02360c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01365e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02360c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -308423,7 +308400,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05874" sboTerm="SBO:0000185" id="MAR05874" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05874" sboTerm="SBO:0000185" id="R_MAR05874" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -308432,7 +308409,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05874">
+            <rdf:Description rdf:about="#R_MAR05874">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105870"/>
@@ -308443,14 +308420,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02360e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02658c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02360e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02658c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02360c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02658e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02360c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02658e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -308459,7 +308436,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05875" sboTerm="SBO:0000185" id="MAR05875" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05875" sboTerm="SBO:0000185" id="R_MAR05875" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -308468,7 +308445,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05875">
+            <rdf:Description rdf:about="#R_MAR05875">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105871"/>
@@ -308479,14 +308456,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02125c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02360e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02125c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02360e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02125e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02360c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02125e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02360c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -308495,7 +308472,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05876" sboTerm="SBO:0000185" id="MAR05876" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05876" sboTerm="SBO:0000185" id="R_MAR05876" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -308504,7 +308481,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05876">
+            <rdf:Description rdf:about="#R_MAR05876">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105872"/>
@@ -308515,14 +308492,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01588c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02360e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01588c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02360e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01588e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02360c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01588e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02360c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -308531,7 +308508,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05877" sboTerm="SBO:0000185" id="MAR05877" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05877" sboTerm="SBO:0000185" id="R_MAR05877" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -308540,7 +308517,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05877">
+            <rdf:Description rdf:about="#R_MAR05877">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105873"/>
@@ -308551,14 +308528,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02426c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02770e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02426c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02770e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02426e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02770c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02426e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02770c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -308567,7 +308544,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05878" sboTerm="SBO:0000185" id="MAR05878" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05878" sboTerm="SBO:0000185" id="R_MAR05878" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -308576,7 +308553,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05878">
+            <rdf:Description rdf:about="#R_MAR05878">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105874"/>
@@ -308587,14 +308564,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01365c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02770e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01365c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02770e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01365e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02770c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01365e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02770c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -308603,7 +308580,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05879" sboTerm="SBO:0000185" id="MAR05879" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05879" sboTerm="SBO:0000185" id="R_MAR05879" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -308612,7 +308589,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05879">
+            <rdf:Description rdf:about="#R_MAR05879">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105875"/>
@@ -308623,14 +308600,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02658c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02770e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02658c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02770e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02658e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02770c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02658e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02770c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -308639,7 +308616,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05880" sboTerm="SBO:0000185" id="MAR05880" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05880" sboTerm="SBO:0000185" id="R_MAR05880" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -308648,7 +308625,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05880">
+            <rdf:Description rdf:about="#R_MAR05880">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105876"/>
@@ -308659,14 +308636,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02125c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02770e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02125c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02770e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02125e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02770c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02125e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02770c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -308675,7 +308652,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05881" sboTerm="SBO:0000185" id="MAR05881" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05881" sboTerm="SBO:0000185" id="R_MAR05881" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -308684,7 +308661,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05881">
+            <rdf:Description rdf:about="#R_MAR05881">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105877"/>
@@ -308695,14 +308672,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01588c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02770e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01588c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02770e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01588e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02770c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01588e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02770c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -308711,7 +308688,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05882" sboTerm="SBO:0000185" id="MAR05882" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05882" sboTerm="SBO:0000185" id="R_MAR05882" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -308720,7 +308697,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05882">
+            <rdf:Description rdf:about="#R_MAR05882">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105878"/>
@@ -308731,14 +308708,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01369e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02426c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01369e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02426c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01369c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02426e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01369c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02426e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -308747,7 +308724,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05883" sboTerm="SBO:0000185" id="MAR05883" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05883" sboTerm="SBO:0000185" id="R_MAR05883" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -308756,7 +308733,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05883">
+            <rdf:Description rdf:about="#R_MAR05883">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105879"/>
@@ -308767,14 +308744,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01365c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01369e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01365c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01369e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01365e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01369c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01365e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01369c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -308783,7 +308760,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05884" sboTerm="SBO:0000185" id="MAR05884" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05884" sboTerm="SBO:0000185" id="R_MAR05884" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -308792,7 +308769,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05884">
+            <rdf:Description rdf:about="#R_MAR05884">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105880"/>
@@ -308803,14 +308780,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01369e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02658c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01369e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02658c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01369c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02658e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01369c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02658e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -308819,7 +308796,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05885" sboTerm="SBO:0000185" id="MAR05885" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05885" sboTerm="SBO:0000185" id="R_MAR05885" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -308828,7 +308805,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05885">
+            <rdf:Description rdf:about="#R_MAR05885">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105881"/>
@@ -308839,14 +308816,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01369e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02125c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01369e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02125c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01369c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02125e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01369c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02125e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -308855,7 +308832,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05886" sboTerm="SBO:0000185" id="MAR05886" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05886" sboTerm="SBO:0000185" id="R_MAR05886" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -308864,7 +308841,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05886">
+            <rdf:Description rdf:about="#R_MAR05886">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105882"/>
@@ -308875,14 +308852,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01369e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01588c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01369e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01588c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01369c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01588e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01369c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01588e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -308891,7 +308868,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05887" sboTerm="SBO:0000185" id="MAR05887" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05887" sboTerm="SBO:0000185" id="R_MAR05887" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -308900,7 +308877,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05887">
+            <rdf:Description rdf:about="#R_MAR05887">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105883"/>
@@ -308911,14 +308888,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02426c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03135e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02426c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03135e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02426e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03135c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02426e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03135c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -308927,7 +308904,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05888" sboTerm="SBO:0000185" id="MAR05888" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05888" sboTerm="SBO:0000185" id="R_MAR05888" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -308936,7 +308913,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05888">
+            <rdf:Description rdf:about="#R_MAR05888">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105884"/>
@@ -308947,14 +308924,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01365c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03135e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01365c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03135e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01365e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03135c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01365e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03135c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -308963,7 +308940,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05889" sboTerm="SBO:0000185" id="MAR05889" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05889" sboTerm="SBO:0000185" id="R_MAR05889" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -308972,7 +308949,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05889">
+            <rdf:Description rdf:about="#R_MAR05889">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105885"/>
@@ -308983,14 +308960,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02658c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03135e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02658c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03135e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02658e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03135c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02658e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03135c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -308999,7 +308976,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05890" sboTerm="SBO:0000185" id="MAR05890" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05890" sboTerm="SBO:0000185" id="R_MAR05890" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -309008,7 +308985,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05890">
+            <rdf:Description rdf:about="#R_MAR05890">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105886"/>
@@ -309019,14 +308996,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02125c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03135e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02125c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03135e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02125e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03135c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02125e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03135c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -309035,7 +309012,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05891" sboTerm="SBO:0000185" id="MAR05891" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05891" sboTerm="SBO:0000185" id="R_MAR05891" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -309044,7 +309021,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05891">
+            <rdf:Description rdf:about="#R_MAR05891">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105887"/>
@@ -309055,14 +309032,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01588c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03135e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01588c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03135e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01588e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03135c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01588e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03135c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -309071,7 +309048,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05892" sboTerm="SBO:0000185" id="MAR05892" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05892" sboTerm="SBO:0000185" id="R_MAR05892" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -309080,7 +309057,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05892">
+            <rdf:Description rdf:about="#R_MAR05892">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105888"/>
@@ -309091,14 +309068,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02426c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02993e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02426c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02993e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02426e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02993c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02426e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02993c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -309107,7 +309084,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05893" sboTerm="SBO:0000185" id="MAR05893" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05893" sboTerm="SBO:0000185" id="R_MAR05893" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -309116,7 +309093,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05893">
+            <rdf:Description rdf:about="#R_MAR05893">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105889"/>
@@ -309127,14 +309104,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01365c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02993e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01365c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02993e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01365e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02993c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01365e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02993c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -309143,7 +309120,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05894" sboTerm="SBO:0000185" id="MAR05894" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05894" sboTerm="SBO:0000185" id="R_MAR05894" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -309152,7 +309129,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05894">
+            <rdf:Description rdf:about="#R_MAR05894">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105890"/>
@@ -309163,14 +309140,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02658c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02993e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02658c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02993e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02658e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02993c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02658e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02993c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -309179,7 +309156,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05895" sboTerm="SBO:0000185" id="MAR05895" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05895" sboTerm="SBO:0000185" id="R_MAR05895" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -309188,7 +309165,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05895">
+            <rdf:Description rdf:about="#R_MAR05895">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105891"/>
@@ -309199,14 +309176,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02125c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02993e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02125c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02993e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02125e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02993c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02125e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02993c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -309215,7 +309192,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05896" sboTerm="SBO:0000185" id="MAR05896" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05896" sboTerm="SBO:0000185" id="R_MAR05896" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -309224,7 +309201,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05896">
+            <rdf:Description rdf:about="#R_MAR05896">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105892"/>
@@ -309235,14 +309212,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01588c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02993e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01588c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02993e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01588e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02993c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01588e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02993c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -309251,7 +309228,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05897" sboTerm="SBO:0000185" id="MAR05897" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05897" sboTerm="SBO:0000185" id="R_MAR05897" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -309260,7 +309237,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05897">
+            <rdf:Description rdf:about="#R_MAR05897">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105893"/>
@@ -309271,14 +309248,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02136e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02426c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02136e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02426c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02136c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02426e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02136c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02426e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -309287,7 +309264,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05898" sboTerm="SBO:0000185" id="MAR05898" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05898" sboTerm="SBO:0000185" id="R_MAR05898" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -309296,7 +309273,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05898">
+            <rdf:Description rdf:about="#R_MAR05898">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105894"/>
@@ -309307,14 +309284,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01365c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02136e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01365c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02136e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01365e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02136c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01365e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02136c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -309323,7 +309300,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05899" sboTerm="SBO:0000185" id="MAR05899" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05899" sboTerm="SBO:0000185" id="R_MAR05899" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -309332,7 +309309,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05899">
+            <rdf:Description rdf:about="#R_MAR05899">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105895"/>
@@ -309343,14 +309320,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02136e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02658c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02136e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02658c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02136c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02658e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02136c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02658e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -309359,7 +309336,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05900" sboTerm="SBO:0000185" id="MAR05900" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05900" sboTerm="SBO:0000185" id="R_MAR05900" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -309368,7 +309345,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05900">
+            <rdf:Description rdf:about="#R_MAR05900">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105896"/>
@@ -309379,14 +309356,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02125c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02136e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02125c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02136e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02125e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02136c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02125e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02136c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -309395,7 +309372,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05901" sboTerm="SBO:0000185" id="MAR05901" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05901" sboTerm="SBO:0000185" id="R_MAR05901" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -309404,7 +309381,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05901">
+            <rdf:Description rdf:about="#R_MAR05901">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105897"/>
@@ -309415,14 +309392,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01588c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02136e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01588c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02136e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01588e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02136c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01588e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02136c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -309431,7 +309408,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05902" sboTerm="SBO:0000185" id="MAR05902" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05902" sboTerm="SBO:0000185" id="R_MAR05902" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -309440,7 +309417,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05902">
+            <rdf:Description rdf:about="#R_MAR05902">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105898"/>
@@ -309451,14 +309428,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02184e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02426c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02184e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02426c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02184c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02426e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02184c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02426e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -309467,7 +309444,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05903" sboTerm="SBO:0000185" id="MAR05903" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05903" sboTerm="SBO:0000185" id="R_MAR05903" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -309476,7 +309453,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05903">
+            <rdf:Description rdf:about="#R_MAR05903">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105899"/>
@@ -309487,14 +309464,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01365c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02184e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01365c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02184e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01365e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02184c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01365e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02184c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -309503,7 +309480,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05904" sboTerm="SBO:0000185" id="MAR05904" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05904" sboTerm="SBO:0000185" id="R_MAR05904" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -309512,7 +309489,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05904">
+            <rdf:Description rdf:about="#R_MAR05904">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105900"/>
@@ -309523,14 +309500,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02184e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02658c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02184e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02658c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02184c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02658e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02184c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02658e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -309539,7 +309516,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05905" sboTerm="SBO:0000185" id="MAR05905" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05905" sboTerm="SBO:0000185" id="R_MAR05905" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -309548,7 +309525,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05905">
+            <rdf:Description rdf:about="#R_MAR05905">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105901"/>
@@ -309559,14 +309536,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02125c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02184e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02125c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02184e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02125e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02184c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02125e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02184c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -309575,7 +309552,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05906" sboTerm="SBO:0000185" id="MAR05906" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05906" sboTerm="SBO:0000185" id="R_MAR05906" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -309584,7 +309561,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05906">
+            <rdf:Description rdf:about="#R_MAR05906">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105902"/>
@@ -309595,14 +309572,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01588c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02184e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01588c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02184e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01588e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02184c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01588e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02184c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -309611,7 +309588,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05907" sboTerm="SBO:0000185" id="MAR05907" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05907" sboTerm="SBO:0000185" id="R_MAR05907" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -309620,7 +309597,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05907">
+            <rdf:Description rdf:about="#R_MAR05907">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105903"/>
@@ -309632,12 +309609,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01986c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02426e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02426e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01986e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02426c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02426c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:and>
@@ -309649,7 +309626,7 @@
           </fbc:and>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05908" sboTerm="SBO:0000185" id="MAR05908" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05908" sboTerm="SBO:0000185" id="R_MAR05908" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -309658,7 +309635,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05908">
+            <rdf:Description rdf:about="#R_MAR05908">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105904"/>
@@ -309670,12 +309647,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01307c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02426e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01307c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02426e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01307e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02426c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01307e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02426c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:and>
@@ -309687,7 +309664,7 @@
           </fbc:and>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05909" sboTerm="SBO:0000185" id="MAR05909" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05909" sboTerm="SBO:0000185" id="R_MAR05909" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -309696,7 +309673,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05909">
+            <rdf:Description rdf:about="#R_MAR05909">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105905"/>
@@ -309708,12 +309685,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01975c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02426e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01975c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02426e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01975e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02426c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01975e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02426c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:and>
@@ -309725,7 +309702,7 @@
           </fbc:and>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05910" sboTerm="SBO:0000185" id="MAR05910" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05910" sboTerm="SBO:0000185" id="R_MAR05910" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -309734,7 +309711,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05910">
+            <rdf:Description rdf:about="#R_MAR05910">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105906"/>
@@ -309746,12 +309723,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02426e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02896c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02426e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02896c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02426c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02896e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02426c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02896e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:and>
@@ -309763,7 +309740,7 @@
           </fbc:and>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05911" sboTerm="SBO:0000185" id="MAR05911" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05911" sboTerm="SBO:0000185" id="R_MAR05911" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -309772,7 +309749,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05911">
+            <rdf:Description rdf:about="#R_MAR05911">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105907"/>
@@ -309784,12 +309761,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02426e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02471c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02426e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02471c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02426c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02471e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02426c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02471e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:and>
@@ -309801,7 +309778,7 @@
           </fbc:and>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05912" sboTerm="SBO:0000185" id="MAR05912" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05912" sboTerm="SBO:0000185" id="R_MAR05912" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -309810,7 +309787,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05912">
+            <rdf:Description rdf:about="#R_MAR05912">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105908"/>
@@ -309822,12 +309799,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02426e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03089c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02426e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03089c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02426c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03089e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02426c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03089e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:and>
@@ -309839,7 +309816,7 @@
           </fbc:and>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05913" sboTerm="SBO:0000185" id="MAR05913" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05913" sboTerm="SBO:0000185" id="R_MAR05913" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -309848,7 +309825,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05913">
+            <rdf:Description rdf:about="#R_MAR05913">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105909"/>
@@ -309860,12 +309837,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02426e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02724c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02426e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02724c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02426c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02724e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02426c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02724e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:and>
@@ -309877,7 +309854,7 @@
           </fbc:and>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05914" sboTerm="SBO:0000185" id="MAR05914" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05914" sboTerm="SBO:0000185" id="R_MAR05914" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -309886,7 +309863,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05914">
+            <rdf:Description rdf:about="#R_MAR05914">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105910"/>
@@ -309898,12 +309875,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02426e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03101c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02426e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03101c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02426c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03101e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02426c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03101e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:and>
@@ -309915,7 +309892,7 @@
           </fbc:and>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05915" sboTerm="SBO:0000185" id="MAR05915" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05915" sboTerm="SBO:0000185" id="R_MAR05915" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -309924,7 +309901,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05915">
+            <rdf:Description rdf:about="#R_MAR05915">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105911"/>
@@ -309936,12 +309913,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01628c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02426e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01628c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02426e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01628e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02426c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01628e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02426c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:and>
@@ -309953,7 +309930,7 @@
           </fbc:and>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05916" sboTerm="SBO:0000185" id="MAR05916" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05916" sboTerm="SBO:0000185" id="R_MAR05916" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -309962,7 +309939,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05916">
+            <rdf:Description rdf:about="#R_MAR05916">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105912"/>
@@ -309974,12 +309951,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02360c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02426e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02360c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02426e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02360e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02426c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02360e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02426c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:and>
@@ -309991,7 +309968,7 @@
           </fbc:and>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05917" sboTerm="SBO:0000185" id="MAR05917" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05917" sboTerm="SBO:0000185" id="R_MAR05917" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -310000,7 +309977,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05917">
+            <rdf:Description rdf:about="#R_MAR05917">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105913"/>
@@ -310012,12 +309989,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02426e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02770c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02426e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02770c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02426c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02770e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02426c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02770e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:and>
@@ -310029,7 +310006,7 @@
           </fbc:and>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05918" sboTerm="SBO:0000185" id="MAR05918" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05918" sboTerm="SBO:0000185" id="R_MAR05918" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -310038,7 +310015,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05918">
+            <rdf:Description rdf:about="#R_MAR05918">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105914"/>
@@ -310050,12 +310027,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01369c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02426e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01369c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02426e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01369e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02426c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01369e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02426c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:and>
@@ -310067,7 +310044,7 @@
           </fbc:and>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05919" sboTerm="SBO:0000185" id="MAR05919" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05919" sboTerm="SBO:0000185" id="R_MAR05919" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -310076,7 +310053,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05919">
+            <rdf:Description rdf:about="#R_MAR05919">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105915"/>
@@ -310088,12 +310065,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02426e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03135c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02426e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03135c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02426c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03135e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02426c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03135e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:and>
@@ -310105,7 +310082,7 @@
           </fbc:and>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05920" sboTerm="SBO:0000185" id="MAR05920" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05920" sboTerm="SBO:0000185" id="R_MAR05920" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -310114,7 +310091,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05920">
+            <rdf:Description rdf:about="#R_MAR05920">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105916"/>
@@ -310126,12 +310103,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02426e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02993c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02426e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02993c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02426c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02993e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02426c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02993e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:and>
@@ -310143,7 +310120,7 @@
           </fbc:and>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05921" sboTerm="SBO:0000185" id="MAR05921" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05921" sboTerm="SBO:0000185" id="R_MAR05921" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -310152,7 +310129,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05921">
+            <rdf:Description rdf:about="#R_MAR05921">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105917"/>
@@ -310164,12 +310141,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02136c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02426e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02136c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02426e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02136e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02426c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02136e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02426c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:and>
@@ -310181,7 +310158,7 @@
           </fbc:and>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05922" sboTerm="SBO:0000185" id="MAR05922" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05922" sboTerm="SBO:0000185" id="R_MAR05922" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -310190,7 +310167,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05922">
+            <rdf:Description rdf:about="#R_MAR05922">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105918"/>
@@ -310202,12 +310179,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02184c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02426e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02184c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02426e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02184e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02426c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02184e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02426c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:and>
@@ -310219,7 +310196,7 @@
           </fbc:and>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05923" sboTerm="SBO:0000185" id="MAR05923" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05923" sboTerm="SBO:0000185" id="R_MAR05923" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -310228,7 +310205,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05923">
+            <rdf:Description rdf:about="#R_MAR05923">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105919"/>
@@ -310240,12 +310217,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01365e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01986c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01365e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01365c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01986e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01365c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:and>
@@ -310257,7 +310234,7 @@
           </fbc:and>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05924" sboTerm="SBO:0000185" id="MAR05924" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05924" sboTerm="SBO:0000185" id="R_MAR05924" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -310266,7 +310243,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05924">
+            <rdf:Description rdf:about="#R_MAR05924">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105920"/>
@@ -310278,12 +310255,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01307c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01365e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01307c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01365e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01307e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01365c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01307e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01365c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:and>
@@ -310295,7 +310272,7 @@
           </fbc:and>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05925" sboTerm="SBO:0000185" id="MAR05925" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05925" sboTerm="SBO:0000185" id="R_MAR05925" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -310304,7 +310281,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05925">
+            <rdf:Description rdf:about="#R_MAR05925">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105921"/>
@@ -310316,12 +310293,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01365e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01975c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01365e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01975c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01365c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01975e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01365c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01975e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:and>
@@ -310333,7 +310310,7 @@
           </fbc:and>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05926" sboTerm="SBO:0000185" id="MAR05926" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05926" sboTerm="SBO:0000185" id="R_MAR05926" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -310342,7 +310319,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05926">
+            <rdf:Description rdf:about="#R_MAR05926">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105922"/>
@@ -310354,12 +310331,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01365e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02896c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01365e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02896c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01365c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02896e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01365c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02896e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:and>
@@ -310371,7 +310348,7 @@
           </fbc:and>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05927" sboTerm="SBO:0000185" id="MAR05927" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05927" sboTerm="SBO:0000185" id="R_MAR05927" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -310380,7 +310357,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05927">
+            <rdf:Description rdf:about="#R_MAR05927">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105923"/>
@@ -310392,12 +310369,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01365e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02471c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01365e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02471c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01365c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02471e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01365c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02471e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:and>
@@ -310409,7 +310386,7 @@
           </fbc:and>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05928" sboTerm="SBO:0000185" id="MAR05928" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05928" sboTerm="SBO:0000185" id="R_MAR05928" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -310418,7 +310395,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05928">
+            <rdf:Description rdf:about="#R_MAR05928">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105924"/>
@@ -310430,12 +310407,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01365e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03089c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01365e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03089c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01365c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03089e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01365c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03089e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:and>
@@ -310447,7 +310424,7 @@
           </fbc:and>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05929" sboTerm="SBO:0000185" id="MAR05929" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05929" sboTerm="SBO:0000185" id="R_MAR05929" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -310456,7 +310433,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05929">
+            <rdf:Description rdf:about="#R_MAR05929">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105925"/>
@@ -310468,12 +310445,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01365e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02724c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01365e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02724c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01365c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02724e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01365c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02724e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:and>
@@ -310485,7 +310462,7 @@
           </fbc:and>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05930" sboTerm="SBO:0000185" id="MAR05930" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05930" sboTerm="SBO:0000185" id="R_MAR05930" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -310494,7 +310471,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05930">
+            <rdf:Description rdf:about="#R_MAR05930">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105926"/>
@@ -310506,12 +310483,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01365e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03101c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01365e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03101c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01365c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03101e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01365c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03101e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:and>
@@ -310523,7 +310500,7 @@
           </fbc:and>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05931" sboTerm="SBO:0000185" id="MAR05931" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05931" sboTerm="SBO:0000185" id="R_MAR05931" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -310532,7 +310509,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05931">
+            <rdf:Description rdf:about="#R_MAR05931">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105927"/>
@@ -310544,12 +310521,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01365e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01628c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01365e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01628c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01365c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01628e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01365c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01628e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:and>
@@ -310561,7 +310538,7 @@
           </fbc:and>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05932" sboTerm="SBO:0000185" id="MAR05932" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05932" sboTerm="SBO:0000185" id="R_MAR05932" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -310570,7 +310547,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05932">
+            <rdf:Description rdf:about="#R_MAR05932">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105928"/>
@@ -310582,12 +310559,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01365e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02360c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01365e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02360c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01365c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02360e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01365c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02360e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:and>
@@ -310599,7 +310576,7 @@
           </fbc:and>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05933" sboTerm="SBO:0000185" id="MAR05933" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05933" sboTerm="SBO:0000185" id="R_MAR05933" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -310608,7 +310585,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05933">
+            <rdf:Description rdf:about="#R_MAR05933">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105929"/>
@@ -310620,12 +310597,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01365e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02770c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01365e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02770c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01365c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02770e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01365c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02770e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:and>
@@ -310637,7 +310614,7 @@
           </fbc:and>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05934" sboTerm="SBO:0000185" id="MAR05934" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05934" sboTerm="SBO:0000185" id="R_MAR05934" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -310646,7 +310623,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05934">
+            <rdf:Description rdf:about="#R_MAR05934">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105930"/>
@@ -310658,12 +310635,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01365e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01369c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01365e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01369c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01365c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01369e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01365c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01369e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:and>
@@ -310675,7 +310652,7 @@
           </fbc:and>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05935" sboTerm="SBO:0000185" id="MAR05935" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05935" sboTerm="SBO:0000185" id="R_MAR05935" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -310684,7 +310661,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05935">
+            <rdf:Description rdf:about="#R_MAR05935">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105931"/>
@@ -310696,12 +310673,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01365e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03135c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01365e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03135c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01365c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03135e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01365c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03135e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:and>
@@ -310713,7 +310690,7 @@
           </fbc:and>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05936" sboTerm="SBO:0000185" id="MAR05936" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05936" sboTerm="SBO:0000185" id="R_MAR05936" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -310722,7 +310699,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05936">
+            <rdf:Description rdf:about="#R_MAR05936">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105932"/>
@@ -310734,12 +310711,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01365e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02993c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01365e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02993c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01365c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02993e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01365c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02993e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:and>
@@ -310751,7 +310728,7 @@
           </fbc:and>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05937" sboTerm="SBO:0000185" id="MAR05937" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05937" sboTerm="SBO:0000185" id="R_MAR05937" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -310760,7 +310737,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05937">
+            <rdf:Description rdf:about="#R_MAR05937">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105933"/>
@@ -310772,12 +310749,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01365e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02136c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01365e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02136c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01365c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02136e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01365c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02136e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:and>
@@ -310789,7 +310766,7 @@
           </fbc:and>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05938" sboTerm="SBO:0000185" id="MAR05938" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05938" sboTerm="SBO:0000185" id="R_MAR05938" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -310798,7 +310775,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05938">
+            <rdf:Description rdf:about="#R_MAR05938">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105934"/>
@@ -310810,12 +310787,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01365e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02184c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01365e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02184c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01365c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02184e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01365c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02184e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:and>
@@ -310827,7 +310804,7 @@
           </fbc:and>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05939" sboTerm="SBO:0000185" id="MAR05939" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05939" sboTerm="SBO:0000185" id="R_MAR05939" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -310836,7 +310813,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05939">
+            <rdf:Description rdf:about="#R_MAR05939">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105935"/>
@@ -310848,12 +310825,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01986c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02658e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02658e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01986e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02658c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02658c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:and>
@@ -310865,7 +310842,7 @@
           </fbc:and>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05940" sboTerm="SBO:0000185" id="MAR05940" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05940" sboTerm="SBO:0000185" id="R_MAR05940" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -310874,7 +310851,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05940">
+            <rdf:Description rdf:about="#R_MAR05940">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/ORNALArBATtc"/>
@@ -310885,12 +310862,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01307c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02658e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01307c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02658e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01307e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02658c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01307e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02658c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:and>
@@ -310902,7 +310879,7 @@
           </fbc:and>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05941" sboTerm="SBO:0000185" id="MAR05941" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05941" sboTerm="SBO:0000185" id="R_MAR05941" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -310911,7 +310888,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05941">
+            <rdf:Description rdf:about="#R_MAR05941">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105936"/>
@@ -310923,12 +310900,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01975c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02658e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01975c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02658e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01975e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02658c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01975e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02658c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:and>
@@ -310940,7 +310917,7 @@
           </fbc:and>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05942" sboTerm="SBO:0000185" id="MAR05942" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05942" sboTerm="SBO:0000185" id="R_MAR05942" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -310949,7 +310926,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05942">
+            <rdf:Description rdf:about="#R_MAR05942">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105937"/>
@@ -310961,12 +310938,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02658e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02896c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02658e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02896c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02658c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02896e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02658c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02896e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:and>
@@ -310978,7 +310955,7 @@
           </fbc:and>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05943" sboTerm="SBO:0000185" id="MAR05943" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05943" sboTerm="SBO:0000185" id="R_MAR05943" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -310987,7 +310964,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05943">
+            <rdf:Description rdf:about="#R_MAR05943">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105938"/>
@@ -310999,12 +310976,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02471c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02658e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02471c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02658e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02471e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02658c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02471e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02658c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:and>
@@ -311016,7 +310993,7 @@
           </fbc:and>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05944" sboTerm="SBO:0000185" id="MAR05944" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05944" sboTerm="SBO:0000185" id="R_MAR05944" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -311025,7 +311002,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05944">
+            <rdf:Description rdf:about="#R_MAR05944">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105939"/>
@@ -311037,12 +311014,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02658e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03089c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02658e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03089c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02658c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03089e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02658c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03089e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:and>
@@ -311054,7 +311031,7 @@
           </fbc:and>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05945" sboTerm="SBO:0000185" id="MAR05945" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05945" sboTerm="SBO:0000185" id="R_MAR05945" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -311063,7 +311040,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05945">
+            <rdf:Description rdf:about="#R_MAR05945">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105940"/>
@@ -311075,12 +311052,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02658e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02724c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02658e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02724c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02658c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02724e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02658c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02724e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:and>
@@ -311092,7 +311069,7 @@
           </fbc:and>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05946" sboTerm="SBO:0000185" id="MAR05946" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05946" sboTerm="SBO:0000185" id="R_MAR05946" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -311101,7 +311078,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05946">
+            <rdf:Description rdf:about="#R_MAR05946">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105941"/>
@@ -311113,12 +311090,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02658e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03101c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02658e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03101c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02658c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03101e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02658c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03101e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:and>
@@ -311130,7 +311107,7 @@
           </fbc:and>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05947" sboTerm="SBO:0000185" id="MAR05947" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05947" sboTerm="SBO:0000185" id="R_MAR05947" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -311139,7 +311116,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05947">
+            <rdf:Description rdf:about="#R_MAR05947">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105942"/>
@@ -311151,12 +311128,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01628c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02658e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01628c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02658e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01628e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02658c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01628e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02658c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:and>
@@ -311168,7 +311145,7 @@
           </fbc:and>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05948" sboTerm="SBO:0000185" id="MAR05948" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05948" sboTerm="SBO:0000185" id="R_MAR05948" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -311177,7 +311154,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05948">
+            <rdf:Description rdf:about="#R_MAR05948">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/ORNLEUrBATtc"/>
@@ -311188,12 +311165,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02360c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02658e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02360c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02658e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02360e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02658c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02360e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02658c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:and>
@@ -311205,7 +311182,7 @@
           </fbc:and>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05949" sboTerm="SBO:0000185" id="MAR05949" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05949" sboTerm="SBO:0000185" id="R_MAR05949" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -311214,7 +311191,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05949">
+            <rdf:Description rdf:about="#R_MAR05949">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105943"/>
@@ -311226,12 +311203,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02658e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02770c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02658e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02770c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02658c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02770e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02658c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02770e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:and>
@@ -311243,7 +311220,7 @@
           </fbc:and>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05950" sboTerm="SBO:0000185" id="MAR05950" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05950" sboTerm="SBO:0000185" id="R_MAR05950" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -311252,7 +311229,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05950">
+            <rdf:Description rdf:about="#R_MAR05950">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105944"/>
@@ -311264,12 +311241,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01369c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02658e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01369c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02658e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01369e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02658c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01369e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02658c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:and>
@@ -311281,7 +311258,7 @@
           </fbc:and>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05951" sboTerm="SBO:0000185" id="MAR05951" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05951" sboTerm="SBO:0000185" id="R_MAR05951" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -311290,7 +311267,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05951">
+            <rdf:Description rdf:about="#R_MAR05951">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105945"/>
@@ -311302,12 +311279,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02658e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03135c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02658e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03135c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02658c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03135e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02658c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03135e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:and>
@@ -311319,7 +311296,7 @@
           </fbc:and>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05952" sboTerm="SBO:0000185" id="MAR05952" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05952" sboTerm="SBO:0000185" id="R_MAR05952" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -311328,7 +311305,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05952">
+            <rdf:Description rdf:about="#R_MAR05952">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105946"/>
@@ -311340,12 +311317,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02658e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02993c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02658e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02993c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02658c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02993e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02658c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02993e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:and>
@@ -311357,7 +311334,7 @@
           </fbc:and>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05953" sboTerm="SBO:0000185" id="MAR05953" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05953" sboTerm="SBO:0000185" id="R_MAR05953" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -311366,7 +311343,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05953">
+            <rdf:Description rdf:about="#R_MAR05953">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105947"/>
@@ -311378,12 +311355,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02136c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02658e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02136c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02658e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02136e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02658c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02136e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02658c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:and>
@@ -311395,7 +311372,7 @@
           </fbc:and>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05954" sboTerm="SBO:0000185" id="MAR05954" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05954" sboTerm="SBO:0000185" id="R_MAR05954" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -311404,7 +311381,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05954">
+            <rdf:Description rdf:about="#R_MAR05954">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105948"/>
@@ -311416,12 +311393,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02184c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02658e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02184c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02658e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02184e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02658c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02184e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02658c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:and>
@@ -311433,7 +311410,7 @@
           </fbc:and>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05955" sboTerm="SBO:0000185" id="MAR05955" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05955" sboTerm="SBO:0000185" id="R_MAR05955" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -311442,7 +311419,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05955">
+            <rdf:Description rdf:about="#R_MAR05955">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105949"/>
@@ -311454,12 +311431,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01986c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02125e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02125e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01986e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02125c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02125c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:and>
@@ -311471,7 +311448,7 @@
           </fbc:and>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05956" sboTerm="SBO:0000185" id="MAR05956" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05956" sboTerm="SBO:0000185" id="R_MAR05956" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -311480,7 +311457,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05956">
+            <rdf:Description rdf:about="#R_MAR05956">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105950"/>
@@ -311492,12 +311469,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01307c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02125e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01307c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02125e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01307e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02125c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01307e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02125c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:and>
@@ -311509,7 +311486,7 @@
           </fbc:and>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05957" sboTerm="SBO:0000185" id="MAR05957" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05957" sboTerm="SBO:0000185" id="R_MAR05957" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -311518,7 +311495,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05957">
+            <rdf:Description rdf:about="#R_MAR05957">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105951"/>
@@ -311530,12 +311507,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01975c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02125e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01975c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02125e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01975e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02125c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01975e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02125c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:and>
@@ -311547,7 +311524,7 @@
           </fbc:and>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05958" sboTerm="SBO:0000185" id="MAR05958" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05958" sboTerm="SBO:0000185" id="R_MAR05958" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -311556,7 +311533,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05958">
+            <rdf:Description rdf:about="#R_MAR05958">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105952"/>
@@ -311568,12 +311545,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02125e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02896c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02125e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02896c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02125c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02896e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02125c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02896e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:and>
@@ -311585,7 +311562,7 @@
           </fbc:and>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05959" sboTerm="SBO:0000185" id="MAR05959" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05959" sboTerm="SBO:0000185" id="R_MAR05959" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -311594,7 +311571,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05959">
+            <rdf:Description rdf:about="#R_MAR05959">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105953"/>
@@ -311606,12 +311583,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02125e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02471c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02125e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02471c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02125c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02471e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02125c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02471e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:and>
@@ -311623,7 +311600,7 @@
           </fbc:and>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05960" sboTerm="SBO:0000185" id="MAR05960" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05960" sboTerm="SBO:0000185" id="R_MAR05960" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -311632,7 +311609,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05960">
+            <rdf:Description rdf:about="#R_MAR05960">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105954"/>
@@ -311644,12 +311621,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02125e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03089c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02125e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03089c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02125c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03089e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02125c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03089e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:and>
@@ -311661,7 +311638,7 @@
           </fbc:and>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05961" sboTerm="SBO:0000185" id="MAR05961" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05961" sboTerm="SBO:0000185" id="R_MAR05961" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -311670,7 +311647,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05961">
+            <rdf:Description rdf:about="#R_MAR05961">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105955"/>
@@ -311682,12 +311659,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02125e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02724c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02125e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02724c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02125c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02724e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02125c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02724e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:and>
@@ -311699,7 +311676,7 @@
           </fbc:and>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05962" sboTerm="SBO:0000185" id="MAR05962" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05962" sboTerm="SBO:0000185" id="R_MAR05962" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -311708,7 +311685,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05962">
+            <rdf:Description rdf:about="#R_MAR05962">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105956"/>
@@ -311720,12 +311697,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02125e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03101c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02125e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03101c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02125c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03101e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02125c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03101e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:and>
@@ -311737,7 +311714,7 @@
           </fbc:and>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05963" sboTerm="SBO:0000185" id="MAR05963" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05963" sboTerm="SBO:0000185" id="R_MAR05963" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -311746,7 +311723,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05963">
+            <rdf:Description rdf:about="#R_MAR05963">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105957"/>
@@ -311758,12 +311735,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01628c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02125e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01628c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02125e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01628e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02125c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01628e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02125c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:and>
@@ -311775,7 +311752,7 @@
           </fbc:and>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05964" sboTerm="SBO:0000185" id="MAR05964" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05964" sboTerm="SBO:0000185" id="R_MAR05964" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -311784,7 +311761,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05964">
+            <rdf:Description rdf:about="#R_MAR05964">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105958"/>
@@ -311796,12 +311773,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02125e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02360c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02125e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02360c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02125c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02360e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02125c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02360e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:and>
@@ -311813,7 +311790,7 @@
           </fbc:and>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05965" sboTerm="SBO:0000185" id="MAR05965" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05965" sboTerm="SBO:0000185" id="R_MAR05965" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -311822,7 +311799,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05965">
+            <rdf:Description rdf:about="#R_MAR05965">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105959"/>
@@ -311834,12 +311811,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02125e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02770c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02125e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02770c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02125c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02770e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02125c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02770e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:and>
@@ -311851,7 +311828,7 @@
           </fbc:and>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05966" sboTerm="SBO:0000185" id="MAR05966" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05966" sboTerm="SBO:0000185" id="R_MAR05966" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -311860,7 +311837,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05966">
+            <rdf:Description rdf:about="#R_MAR05966">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105960"/>
@@ -311872,12 +311849,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01369c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02125e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01369c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02125e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01369e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02125c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01369e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02125c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:and>
@@ -311889,7 +311866,7 @@
           </fbc:and>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05967" sboTerm="SBO:0000185" id="MAR05967" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05967" sboTerm="SBO:0000185" id="R_MAR05967" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -311898,7 +311875,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05967">
+            <rdf:Description rdf:about="#R_MAR05967">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105961"/>
@@ -311910,12 +311887,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02125e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03135c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02125e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03135c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02125c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03135e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02125c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03135e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:and>
@@ -311927,7 +311904,7 @@
           </fbc:and>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05968" sboTerm="SBO:0000185" id="MAR05968" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05968" sboTerm="SBO:0000185" id="R_MAR05968" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -311936,7 +311913,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05968">
+            <rdf:Description rdf:about="#R_MAR05968">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105962"/>
@@ -311948,12 +311925,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02125e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02993c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02125e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02993c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02125c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02993e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02125c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02993e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:and>
@@ -311965,7 +311942,7 @@
           </fbc:and>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05969" sboTerm="SBO:0000185" id="MAR05969" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05969" sboTerm="SBO:0000185" id="R_MAR05969" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -311974,7 +311951,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05969">
+            <rdf:Description rdf:about="#R_MAR05969">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105963"/>
@@ -311986,12 +311963,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02125e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02136c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02125e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02136c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02125c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02136e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02125c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02136e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:and>
@@ -312003,7 +311980,7 @@
           </fbc:and>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05970" sboTerm="SBO:0000185" id="MAR05970" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05970" sboTerm="SBO:0000185" id="R_MAR05970" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -312012,7 +311989,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05970">
+            <rdf:Description rdf:about="#R_MAR05970">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105964"/>
@@ -312024,12 +312001,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02125e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02184c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02125e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02184c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02125c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02184e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02125c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02184e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:and>
@@ -312041,7 +312018,7 @@
           </fbc:and>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05971" sboTerm="SBO:0000185" id="MAR05971" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05971" sboTerm="SBO:0000185" id="R_MAR05971" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -312050,7 +312027,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05971">
+            <rdf:Description rdf:about="#R_MAR05971">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105965"/>
@@ -312062,12 +312039,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01588e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01986c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01588e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01588c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01986e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01588c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:and>
@@ -312079,7 +312056,7 @@
           </fbc:and>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05972" sboTerm="SBO:0000185" id="MAR05972" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05972" sboTerm="SBO:0000185" id="R_MAR05972" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -312088,7 +312065,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05972">
+            <rdf:Description rdf:about="#R_MAR05972">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105966"/>
@@ -312100,12 +312077,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01307c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01588e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01307c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01588e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01307e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01588c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01307e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01588c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:and>
@@ -312117,7 +312094,7 @@
           </fbc:and>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05973" sboTerm="SBO:0000185" id="MAR05973" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05973" sboTerm="SBO:0000185" id="R_MAR05973" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -312126,7 +312103,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05973">
+            <rdf:Description rdf:about="#R_MAR05973">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105967"/>
@@ -312138,12 +312115,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01588e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01975c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01588e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01975c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01588c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01975e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01588c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01975e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:and>
@@ -312155,7 +312132,7 @@
           </fbc:and>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05974" sboTerm="SBO:0000185" id="MAR05974" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05974" sboTerm="SBO:0000185" id="R_MAR05974" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -312164,7 +312141,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05974">
+            <rdf:Description rdf:about="#R_MAR05974">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105968"/>
@@ -312176,12 +312153,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01588e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02896c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01588e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02896c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01588c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02896e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01588c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02896e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:and>
@@ -312193,7 +312170,7 @@
           </fbc:and>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05975" sboTerm="SBO:0000185" id="MAR05975" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05975" sboTerm="SBO:0000185" id="R_MAR05975" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -312202,7 +312179,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05975">
+            <rdf:Description rdf:about="#R_MAR05975">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105969"/>
@@ -312214,12 +312191,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01588e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02471c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01588e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02471c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01588c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02471e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01588c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02471e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:and>
@@ -312231,7 +312208,7 @@
           </fbc:and>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05976" sboTerm="SBO:0000185" id="MAR05976" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05976" sboTerm="SBO:0000185" id="R_MAR05976" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -312240,7 +312217,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05976">
+            <rdf:Description rdf:about="#R_MAR05976">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105970"/>
@@ -312252,12 +312229,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01588e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03089c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01588e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03089c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01588c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03089e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01588c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03089e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:and>
@@ -312269,7 +312246,7 @@
           </fbc:and>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05977" sboTerm="SBO:0000185" id="MAR05977" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05977" sboTerm="SBO:0000185" id="R_MAR05977" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -312278,7 +312255,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05977">
+            <rdf:Description rdf:about="#R_MAR05977">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105971"/>
@@ -312290,12 +312267,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01588e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02724c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01588e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02724c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01588c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02724e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01588c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02724e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:and>
@@ -312307,7 +312284,7 @@
           </fbc:and>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05978" sboTerm="SBO:0000185" id="MAR05978" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05978" sboTerm="SBO:0000185" id="R_MAR05978" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -312316,7 +312293,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05978">
+            <rdf:Description rdf:about="#R_MAR05978">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105972"/>
@@ -312328,12 +312305,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01588e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03101c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01588e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03101c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01588c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03101e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01588c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03101e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:and>
@@ -312345,7 +312322,7 @@
           </fbc:and>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05979" sboTerm="SBO:0000185" id="MAR05979" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05979" sboTerm="SBO:0000185" id="R_MAR05979" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -312354,7 +312331,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05979">
+            <rdf:Description rdf:about="#R_MAR05979">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105973"/>
@@ -312366,12 +312343,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01588e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01628c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01588e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01628c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01588c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01628e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01588c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01628e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:and>
@@ -312383,7 +312360,7 @@
           </fbc:and>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05980" sboTerm="SBO:0000185" id="MAR05980" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05980" sboTerm="SBO:0000185" id="R_MAR05980" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -312392,7 +312369,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05980">
+            <rdf:Description rdf:about="#R_MAR05980">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105974"/>
@@ -312404,12 +312381,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01588e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02360c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01588e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02360c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01588c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02360e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01588c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02360e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:and>
@@ -312421,7 +312398,7 @@
           </fbc:and>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05981" sboTerm="SBO:0000185" id="MAR05981" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05981" sboTerm="SBO:0000185" id="R_MAR05981" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -312430,7 +312407,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05981">
+            <rdf:Description rdf:about="#R_MAR05981">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105975"/>
@@ -312442,12 +312419,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01588e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02770c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01588e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02770c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01588c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02770e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01588c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02770e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:and>
@@ -312459,7 +312436,7 @@
           </fbc:and>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05982" sboTerm="SBO:0000185" id="MAR05982" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05982" sboTerm="SBO:0000185" id="R_MAR05982" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -312468,7 +312445,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05982">
+            <rdf:Description rdf:about="#R_MAR05982">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105976"/>
@@ -312480,12 +312457,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01369c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01588e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01369c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01588e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01369e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01588c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01369e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01588c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:and>
@@ -312497,7 +312474,7 @@
           </fbc:and>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05983" sboTerm="SBO:0000185" id="MAR05983" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05983" sboTerm="SBO:0000185" id="R_MAR05983" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -312506,7 +312483,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05983">
+            <rdf:Description rdf:about="#R_MAR05983">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105977"/>
@@ -312518,12 +312495,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01588e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03135c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01588e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03135c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01588c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03135e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01588c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03135e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:and>
@@ -312535,7 +312512,7 @@
           </fbc:and>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05984" sboTerm="SBO:0000185" id="MAR05984" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05984" sboTerm="SBO:0000185" id="R_MAR05984" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -312544,7 +312521,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05984">
+            <rdf:Description rdf:about="#R_MAR05984">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105978"/>
@@ -312556,12 +312533,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01588e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02993c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01588e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02993c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01588c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02993e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01588c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02993e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:and>
@@ -312573,7 +312550,7 @@
           </fbc:and>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05985" sboTerm="SBO:0000185" id="MAR05985" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05985" sboTerm="SBO:0000185" id="R_MAR05985" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -312582,7 +312559,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05985">
+            <rdf:Description rdf:about="#R_MAR05985">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105979"/>
@@ -312594,12 +312571,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01588e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02136c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01588e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02136c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01588c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02136e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01588c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02136e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:and>
@@ -312611,7 +312588,7 @@
           </fbc:and>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05986" sboTerm="SBO:0000185" id="MAR05986" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05986" sboTerm="SBO:0000185" id="R_MAR05986" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -312620,7 +312597,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05986">
+            <rdf:Description rdf:about="#R_MAR05986">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105980"/>
@@ -312632,12 +312609,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01588e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02184c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01588e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02184c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01588c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02184e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01588c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02184e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:and>
@@ -312649,7 +312626,7 @@
           </fbc:and>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05987" sboTerm="SBO:0000185" id="MAR05987" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05987" sboTerm="SBO:0000185" id="R_MAR05987" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -312658,7 +312635,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05987">
+            <rdf:Description rdf:about="#R_MAR05987">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FE2t"/>
@@ -312673,18 +312650,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01821e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01821e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01821c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01821c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Mvl"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05989" sboTerm="SBO:0000185" id="MAR05989" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05989" sboTerm="SBO:0000185" id="R_MAR05989" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -312693,7 +312670,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05989">
+            <rdf:Description rdf:about="#R_MAR05989">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105981"/>
@@ -312705,15 +312682,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03157e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03157e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03157c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03157c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05990" sboTerm="SBO:0000185" id="MAR05990" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05990" sboTerm="SBO:0000185" id="R_MAR05990" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -312722,7 +312699,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05990">
+            <rdf:Description rdf:about="#R_MAR05990">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/KCCt"/>
@@ -312735,18 +312712,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01442c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02200c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01442c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02200c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01442e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02200e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01442e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02200e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="kcc"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05992" sboTerm="SBO:0000185" id="MAR05992" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05992" sboTerm="SBO:0000185" id="R_MAR05992" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -312755,7 +312732,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05992">
+            <rdf:Description rdf:about="#R_MAR05992">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/AKGt4_3"/>
@@ -312768,18 +312745,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01306e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM01306e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="3" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01306c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM01306c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="3" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Indy"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05993" sboTerm="SBO:0000185" id="MAR05993" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05993" sboTerm="SBO:0000185" id="R_MAR05993" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -312787,7 +312764,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05993">
+            <rdf:Description rdf:about="#R_MAR05993">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR96746"/>
@@ -312800,15 +312777,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01587e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01587e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01587c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01587c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05994" sboTerm="SBO:0000185" id="MAR05994" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05994" sboTerm="SBO:0000185" id="R_MAR05994" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -312816,7 +312793,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05994">
+            <rdf:Description rdf:about="#R_MAR05994">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR96748"/>
@@ -312829,18 +312806,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01587e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01587e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01587c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01587c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Indy"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05995" sboTerm="SBO:0000185" id="MAR05995" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05995" sboTerm="SBO:0000185" id="R_MAR05995" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -312848,7 +312825,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05995">
+            <rdf:Description rdf:about="#R_MAR05995">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CITt4_2"/>
@@ -312860,18 +312837,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01587e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01587e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="2" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01587c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01587c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="2" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Indy"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05996" sboTerm="SBO:0000185" id="MAR05996" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05996" sboTerm="SBO:0000185" id="R_MAR05996" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -312880,7 +312857,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05996">
+            <rdf:Description rdf:about="#R_MAR05996">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_5996"/>
@@ -312891,12 +312868,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01587e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM01587e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="3" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01587c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM01587c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="3" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -312906,7 +312883,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05997" sboTerm="SBO:0000185" id="MAR05997" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05997" sboTerm="SBO:0000185" id="R_MAR05997" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -312915,7 +312892,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05997">
+            <rdf:Description rdf:about="#R_MAR05997">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CITt4_4"/>
@@ -312928,27 +312905,27 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01587e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM01587e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="4" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01587c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM01587c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="4" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Indy"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05998" sboTerm="SBO:0000185" id="MAR05998" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05998" sboTerm="SBO:0000185" id="R_MAR05998" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
-            <p>AUTHORS: PMID:12739169;PMID:18305372</p>
+            <p>AUTHORS: PMID:12739169;PMID:18305372;PMID:11101640;PMID:23935841;PMID:31719150</p>
           </body>
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05998">
+            <rdf:Description rdf:about="#R_MAR05998">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/L_LACt2r"/>
@@ -312960,12 +312937,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02403e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02403e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02403c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02403c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -312975,7 +312952,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06000" sboTerm="SBO:0000185" id="MAR06000" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06000" sboTerm="SBO:0000185" id="R_MAR06000" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -312984,7 +312961,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06000">
+            <rdf:Description rdf:about="#R_MAR06000">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105475"/>
@@ -312996,12 +312973,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01253c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02819e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01253c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02819e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01253e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02819c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01253e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02819c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -313011,7 +312988,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06001" sboTerm="SBO:0000185" id="MAR06001" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06001" sboTerm="SBO:0000185" id="R_MAR06001" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -313020,7 +312997,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06001">
+            <rdf:Description rdf:about="#R_MAR06001">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105982"/>
@@ -313032,12 +313009,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01252c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01253e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01252c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01253e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01252e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01253c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01252e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01253c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -313047,7 +313024,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06002" sboTerm="SBO:0000185" id="MAR06002" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06002" sboTerm="SBO:0000185" id="R_MAR06002" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -313056,7 +313033,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06002">
+            <rdf:Description rdf:about="#R_MAR06002">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105983"/>
@@ -313068,12 +313045,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01253c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01833e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01253c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01833e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01253e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01833c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01253e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01833c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -313083,7 +313060,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06003" sboTerm="SBO:0000185" id="MAR06003" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06003" sboTerm="SBO:0000185" id="R_MAR06003" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -313092,7 +313069,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06003">
+            <rdf:Description rdf:about="#R_MAR06003">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105984"/>
@@ -313104,12 +313081,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01253c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02772e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01253c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02772e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01253e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02772c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01253e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02772c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -313119,7 +313096,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06004" sboTerm="SBO:0000185" id="MAR06004" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06004" sboTerm="SBO:0000185" id="R_MAR06004" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -313128,7 +313105,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06004">
+            <rdf:Description rdf:about="#R_MAR06004">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105985"/>
@@ -313140,12 +313117,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01253e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02403c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01253e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02403c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01253c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02403e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01253c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02403e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -313155,7 +313132,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06005" sboTerm="SBO:0000185" id="MAR06005" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06005" sboTerm="SBO:0000185" id="R_MAR06005" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -313164,7 +313141,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06005">
+            <rdf:Description rdf:about="#R_MAR06005">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105986"/>
@@ -313176,12 +313153,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01253c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02833e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01253c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02833e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01253e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02833c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01253e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02833c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -313191,7 +313168,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06006" sboTerm="SBO:0000185" id="MAR06006" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06006" sboTerm="SBO:0000185" id="R_MAR06006" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -313200,7 +313177,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06006">
+            <rdf:Description rdf:about="#R_MAR06006">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105987"/>
@@ -313212,12 +313189,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00648c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01253e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00648c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01253e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00648e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01253c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00648e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01253c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -313227,7 +313204,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06007" sboTerm="SBO:0000185" id="MAR06007" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06007" sboTerm="SBO:0000185" id="R_MAR06007" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -313236,7 +313213,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06007">
+            <rdf:Description rdf:about="#R_MAR06007">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105988"/>
@@ -313248,12 +313225,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00648c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02819e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00648c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02819e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00648e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02819c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00648e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02819c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -313263,7 +313240,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06008" sboTerm="SBO:0000185" id="MAR06008" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06008" sboTerm="SBO:0000185" id="R_MAR06008" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -313272,7 +313249,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06008">
+            <rdf:Description rdf:about="#R_MAR06008">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105989"/>
@@ -313284,12 +313261,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00648c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01252e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00648c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01252e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00648e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01252c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00648e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01252c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -313299,7 +313276,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06009" sboTerm="SBO:0000185" id="MAR06009" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06009" sboTerm="SBO:0000185" id="R_MAR06009" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -313308,7 +313285,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06009">
+            <rdf:Description rdf:about="#R_MAR06009">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105990"/>
@@ -313320,12 +313297,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00648c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01833e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00648c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01833e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00648e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01833c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00648e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01833c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -313335,7 +313312,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06010" sboTerm="SBO:0000185" id="MAR06010" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06010" sboTerm="SBO:0000185" id="R_MAR06010" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -313344,7 +313321,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06010">
+            <rdf:Description rdf:about="#R_MAR06010">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105991"/>
@@ -313356,12 +313333,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00648c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02772e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00648c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02772e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00648e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02772c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00648e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02772c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -313371,7 +313348,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06011" sboTerm="SBO:0000185" id="MAR06011" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06011" sboTerm="SBO:0000185" id="R_MAR06011" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -313380,7 +313357,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06011">
+            <rdf:Description rdf:about="#R_MAR06011">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105992"/>
@@ -313392,12 +313369,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00648c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02403e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00648c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02403e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00648e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02403c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00648e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02403c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -313407,7 +313384,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06012" sboTerm="SBO:0000185" id="MAR06012" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06012" sboTerm="SBO:0000185" id="R_MAR06012" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -313416,7 +313393,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06012">
+            <rdf:Description rdf:about="#R_MAR06012">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105993"/>
@@ -313428,12 +313405,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00648c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01410e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00648c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01410e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00648e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01410c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00648e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01410c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -313443,7 +313420,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06013" sboTerm="SBO:0000185" id="MAR06013" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06013" sboTerm="SBO:0000185" id="R_MAR06013" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -313452,7 +313429,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06013">
+            <rdf:Description rdf:about="#R_MAR06013">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105994"/>
@@ -313464,12 +313441,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00648c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02833e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00648c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02833e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00648e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02833c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00648e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02833c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -313479,7 +313456,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06014" sboTerm="SBO:0000185" id="MAR06014" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06014" sboTerm="SBO:0000185" id="R_MAR06014" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -313488,7 +313465,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06014">
+            <rdf:Description rdf:about="#R_MAR06014">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105995"/>
@@ -313500,12 +313477,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01306c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02819e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01306c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02819e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01306e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02819c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01306e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02819c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -313515,7 +313492,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06015" sboTerm="SBO:0000185" id="MAR06015" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06015" sboTerm="SBO:0000185" id="R_MAR06015" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -313524,7 +313501,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06015">
+            <rdf:Description rdf:about="#R_MAR06015">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105996"/>
@@ -313536,12 +313513,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01252c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02819e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01252c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02819e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01252e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02819c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01252e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02819c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -313551,7 +313528,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06016" sboTerm="SBO:0000185" id="MAR06016" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06016" sboTerm="SBO:0000185" id="R_MAR06016" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -313560,7 +313537,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06016">
+            <rdf:Description rdf:about="#R_MAR06016">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105997"/>
@@ -313572,12 +313549,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01833c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02819e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01833c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02819e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01833e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02819c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01833e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02819c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -313587,7 +313564,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06017" sboTerm="SBO:0000185" id="MAR06017" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06017" sboTerm="SBO:0000185" id="R_MAR06017" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -313596,7 +313573,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06017">
+            <rdf:Description rdf:about="#R_MAR06017">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105998"/>
@@ -313608,12 +313585,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02772c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02819e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02772c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02819e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02772e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02819c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02772e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02819c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -313623,7 +313600,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06018" sboTerm="SBO:0000185" id="MAR06018" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06018" sboTerm="SBO:0000185" id="R_MAR06018" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -313632,7 +313609,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06018">
+            <rdf:Description rdf:about="#R_MAR06018">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105999"/>
@@ -313644,12 +313621,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02403c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02819e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02403c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02819e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02403e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02819c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02403e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02819c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -313659,7 +313636,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06019" sboTerm="SBO:0000185" id="MAR06019" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06019" sboTerm="SBO:0000185" id="R_MAR06019" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -313668,7 +313645,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06019">
+            <rdf:Description rdf:about="#R_MAR06019">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106000"/>
@@ -313680,12 +313657,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01410c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02819e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01410c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02819e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01410e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02819c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01410e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02819c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -313695,7 +313672,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06020" sboTerm="SBO:0000185" id="MAR06020" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06020" sboTerm="SBO:0000185" id="R_MAR06020" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -313704,7 +313681,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06020">
+            <rdf:Description rdf:about="#R_MAR06020">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106001"/>
@@ -313716,12 +313693,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02819c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02833e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02819c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02833e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02819e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02833c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02819e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02833c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -313731,7 +313708,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06021" sboTerm="SBO:0000185" id="MAR06021" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06021" sboTerm="SBO:0000185" id="R_MAR06021" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -313740,7 +313717,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06021">
+            <rdf:Description rdf:about="#R_MAR06021">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106002"/>
@@ -313752,12 +313729,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00157c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02819e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00157c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02819e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00157e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02819c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00157e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02819c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -313767,7 +313744,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06022" sboTerm="SBO:0000185" id="MAR06022" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06022" sboTerm="SBO:0000185" id="R_MAR06022" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -313776,7 +313753,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06022">
+            <rdf:Description rdf:about="#R_MAR06022">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106003"/>
@@ -313788,12 +313765,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01252e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01306c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01252e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01306c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01252c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01306e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01252c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01306e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -313803,7 +313780,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06023" sboTerm="SBO:0000185" id="MAR06023" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06023" sboTerm="SBO:0000185" id="R_MAR06023" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -313812,7 +313789,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06023">
+            <rdf:Description rdf:about="#R_MAR06023">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106004"/>
@@ -313824,12 +313801,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01306c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01833e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01306c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01833e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01306e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01833c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01306e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01833c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -313839,7 +313816,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06024" sboTerm="SBO:0000185" id="MAR06024" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06024" sboTerm="SBO:0000185" id="R_MAR06024" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -313848,7 +313825,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06024">
+            <rdf:Description rdf:about="#R_MAR06024">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106005"/>
@@ -313860,12 +313837,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01306c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02772e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01306c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02772e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01306e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02772c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01306e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02772c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -313875,7 +313852,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06025" sboTerm="SBO:0000185" id="MAR06025" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06025" sboTerm="SBO:0000185" id="R_MAR06025" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -313884,7 +313861,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06025">
+            <rdf:Description rdf:about="#R_MAR06025">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106006"/>
@@ -313896,12 +313873,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01253e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01306c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01253e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01306c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01253c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01306e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01253c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01306e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -313911,7 +313888,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06026" sboTerm="SBO:0000185" id="MAR06026" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06026" sboTerm="SBO:0000185" id="R_MAR06026" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -313920,7 +313897,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06026">
+            <rdf:Description rdf:about="#R_MAR06026">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106007"/>
@@ -313932,12 +313909,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01306c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02403e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01306c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02403e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01306e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02403c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01306e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02403c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -313947,7 +313924,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06027" sboTerm="SBO:0000185" id="MAR06027" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06027" sboTerm="SBO:0000185" id="R_MAR06027" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -313956,7 +313933,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06027">
+            <rdf:Description rdf:about="#R_MAR06027">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106008"/>
@@ -313968,12 +313945,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01306c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01410e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01306c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01410e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01306e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01410c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01306e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01410c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -313983,7 +313960,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06028" sboTerm="SBO:0000185" id="MAR06028" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06028" sboTerm="SBO:0000185" id="R_MAR06028" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -313992,7 +313969,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06028">
+            <rdf:Description rdf:about="#R_MAR06028">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106009"/>
@@ -314004,12 +313981,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01306c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02833e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01306c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02833e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01306e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02833c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01306e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02833c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -314019,7 +313996,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06029" sboTerm="SBO:0000185" id="MAR06029" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06029" sboTerm="SBO:0000185" id="R_MAR06029" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -314028,7 +314005,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06029">
+            <rdf:Description rdf:about="#R_MAR06029">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106010"/>
@@ -314040,12 +314017,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00157c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01306e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00157c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01306e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00157e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01306c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00157e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01306c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -314055,7 +314032,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06030" sboTerm="SBO:0000185" id="MAR06030" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06030" sboTerm="SBO:0000185" id="R_MAR06030" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -314064,7 +314041,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06030">
+            <rdf:Description rdf:about="#R_MAR06030">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106011"/>
@@ -314076,12 +314053,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00648c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01306e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00648c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01306e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00648e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01306c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00648e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01306c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -314091,7 +314068,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06031" sboTerm="SBO:0000185" id="MAR06031" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06031" sboTerm="SBO:0000185" id="R_MAR06031" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -314100,7 +314077,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06031">
+            <rdf:Description rdf:about="#R_MAR06031">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106012"/>
@@ -314112,12 +314089,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01252c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01833e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01252c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01833e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01252e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01833c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01252e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01833c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -314127,7 +314104,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06032" sboTerm="SBO:0000185" id="MAR06032" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06032" sboTerm="SBO:0000185" id="R_MAR06032" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -314136,7 +314113,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06032">
+            <rdf:Description rdf:about="#R_MAR06032">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106013"/>
@@ -314148,12 +314125,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01252c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02772e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01252c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02772e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01252e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02772c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01252e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02772c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -314163,7 +314140,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06033" sboTerm="SBO:0000185" id="MAR06033" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06033" sboTerm="SBO:0000185" id="R_MAR06033" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -314172,7 +314149,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06033">
+            <rdf:Description rdf:about="#R_MAR06033">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106014"/>
@@ -314184,12 +314161,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01252e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02403c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01252e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02403c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01252c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02403e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01252c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02403e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -314199,7 +314176,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06034" sboTerm="SBO:0000185" id="MAR06034" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06034" sboTerm="SBO:0000185" id="R_MAR06034" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -314208,7 +314185,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06034">
+            <rdf:Description rdf:about="#R_MAR06034">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106015"/>
@@ -314220,12 +314197,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01252c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01410e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01252c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01410e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01252e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01410c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01252e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01410c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -314235,7 +314212,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06035" sboTerm="SBO:0000185" id="MAR06035" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06035" sboTerm="SBO:0000185" id="R_MAR06035" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -314244,7 +314221,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06035">
+            <rdf:Description rdf:about="#R_MAR06035">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106016"/>
@@ -314256,12 +314233,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01252c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02833e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01252c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02833e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01252e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02833c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01252e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02833c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -314271,7 +314248,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06036" sboTerm="SBO:0000185" id="MAR06036" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06036" sboTerm="SBO:0000185" id="R_MAR06036" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -314280,7 +314257,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06036">
+            <rdf:Description rdf:about="#R_MAR06036">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106017"/>
@@ -314292,12 +314269,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00157c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01252e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00157c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01252e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00157e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01252c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00157e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01252c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -314307,7 +314284,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06037" sboTerm="SBO:0000185" id="MAR06037" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06037" sboTerm="SBO:0000185" id="R_MAR06037" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -314316,7 +314293,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06037">
+            <rdf:Description rdf:about="#R_MAR06037">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106018"/>
@@ -314328,12 +314305,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01833c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02772e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01833c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02772e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01833e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02772c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01833e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02772c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -314343,7 +314320,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06038" sboTerm="SBO:0000185" id="MAR06038" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06038" sboTerm="SBO:0000185" id="R_MAR06038" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -314352,7 +314329,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06038">
+            <rdf:Description rdf:about="#R_MAR06038">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106019"/>
@@ -314364,12 +314341,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01833e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02403c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01833e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02403c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01833c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02403e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01833c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02403e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -314379,7 +314356,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06039" sboTerm="SBO:0000185" id="MAR06039" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06039" sboTerm="SBO:0000185" id="R_MAR06039" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -314388,7 +314365,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06039">
+            <rdf:Description rdf:about="#R_MAR06039">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106020"/>
@@ -314400,12 +314377,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01410c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01833e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01410c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01833e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01410e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01833c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01410e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01833c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -314415,7 +314392,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06040" sboTerm="SBO:0000185" id="MAR06040" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06040" sboTerm="SBO:0000185" id="R_MAR06040" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -314424,7 +314401,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06040">
+            <rdf:Description rdf:about="#R_MAR06040">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106021"/>
@@ -314436,12 +314413,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01833c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02833e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01833c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02833e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01833e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02833c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01833e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02833c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -314451,7 +314428,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06041" sboTerm="SBO:0000185" id="MAR06041" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06041" sboTerm="SBO:0000185" id="R_MAR06041" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -314460,7 +314437,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06041">
+            <rdf:Description rdf:about="#R_MAR06041">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106022"/>
@@ -314472,12 +314449,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00157c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01833e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00157c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01833e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00157e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01833c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00157e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01833c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -314487,7 +314464,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06042" sboTerm="SBO:0000185" id="MAR06042" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06042" sboTerm="SBO:0000185" id="R_MAR06042" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -314496,7 +314473,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06042">
+            <rdf:Description rdf:about="#R_MAR06042">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106023"/>
@@ -314508,12 +314485,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02403c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02772e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02403c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02772e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02403e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02772c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02403e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02772c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -314523,7 +314500,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06043" sboTerm="SBO:0000185" id="MAR06043" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06043" sboTerm="SBO:0000185" id="R_MAR06043" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -314532,7 +314509,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06043">
+            <rdf:Description rdf:about="#R_MAR06043">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106024"/>
@@ -314544,12 +314521,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01410c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02772e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01410c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02772e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01410e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02772c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01410e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02772c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -314559,7 +314536,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06044" sboTerm="SBO:0000185" id="MAR06044" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06044" sboTerm="SBO:0000185" id="R_MAR06044" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -314568,7 +314545,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06044">
+            <rdf:Description rdf:about="#R_MAR06044">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106025"/>
@@ -314580,12 +314557,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02772c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02833e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02772c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02833e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02772e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02833c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02772e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02833c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -314595,7 +314572,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06045" sboTerm="SBO:0000185" id="MAR06045" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06045" sboTerm="SBO:0000185" id="R_MAR06045" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -314604,7 +314581,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06045">
+            <rdf:Description rdf:about="#R_MAR06045">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106026"/>
@@ -314616,12 +314593,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00157c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02772e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00157c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02772e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00157e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02772c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00157e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02772c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -314631,7 +314608,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06046" sboTerm="SBO:0000185" id="MAR06046" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06046" sboTerm="SBO:0000185" id="R_MAR06046" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -314640,7 +314617,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06046">
+            <rdf:Description rdf:about="#R_MAR06046">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106027"/>
@@ -314652,12 +314629,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01253c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01410e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01253c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01410e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01253e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01410c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01253e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01410c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -314667,7 +314644,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06047" sboTerm="SBO:0000185" id="MAR06047" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06047" sboTerm="SBO:0000185" id="R_MAR06047" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -314676,7 +314653,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06047">
+            <rdf:Description rdf:about="#R_MAR06047">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106028"/>
@@ -314688,12 +314665,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00157c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01253e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00157c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01253e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00157e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01253c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00157e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01253c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -314703,7 +314680,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06048" sboTerm="SBO:0000185" id="MAR06048" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06048" sboTerm="SBO:0000185" id="R_MAR06048" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -314712,7 +314689,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06048">
+            <rdf:Description rdf:about="#R_MAR06048">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106029"/>
@@ -314724,12 +314701,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01410e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02403c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01410e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02403c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01410c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02403e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01410c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02403e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -314739,7 +314716,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06049" sboTerm="SBO:0000185" id="MAR06049" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06049" sboTerm="SBO:0000185" id="R_MAR06049" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -314748,7 +314725,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06049">
+            <rdf:Description rdf:about="#R_MAR06049">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106030"/>
@@ -314760,12 +314737,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02403c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02833e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02403c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02833e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02403e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02833c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02403e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02833c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -314775,7 +314752,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06050" sboTerm="SBO:0000185" id="MAR06050" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06050" sboTerm="SBO:0000185" id="R_MAR06050" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -314784,7 +314761,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06050">
+            <rdf:Description rdf:about="#R_MAR06050">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106031"/>
@@ -314796,12 +314773,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00157c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02403e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00157c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02403e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00157e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02403c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00157e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02403c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -314811,7 +314788,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06051" sboTerm="SBO:0000185" id="MAR06051" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06051" sboTerm="SBO:0000185" id="R_MAR06051" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -314820,7 +314797,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06051">
+            <rdf:Description rdf:about="#R_MAR06051">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106032"/>
@@ -314832,12 +314809,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01410c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02833e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01410c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02833e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01410e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02833c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01410e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02833c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -314847,7 +314824,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06052" sboTerm="SBO:0000185" id="MAR06052" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06052" sboTerm="SBO:0000185" id="R_MAR06052" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -314856,7 +314833,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06052">
+            <rdf:Description rdf:about="#R_MAR06052">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106033"/>
@@ -314868,12 +314845,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00157c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01410e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00157c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01410e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00157e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01410c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00157e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01410c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -314883,7 +314860,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06053" sboTerm="SBO:0000185" id="MAR06053" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06053" sboTerm="SBO:0000185" id="R_MAR06053" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -314892,7 +314869,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06053">
+            <rdf:Description rdf:about="#R_MAR06053">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106034"/>
@@ -314904,12 +314881,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00157c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02833e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00157c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02833e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00157e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02833c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00157e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02833c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -314919,7 +314896,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06054" sboTerm="SBO:0000185" id="MAR06054" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06054" sboTerm="SBO:0000185" id="R_MAR06054" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -314928,7 +314905,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06054">
+            <rdf:Description rdf:about="#R_MAR06054">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106035"/>
@@ -314940,12 +314917,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00157c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00648e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00157c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00648e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00157e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00648c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00157e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00648c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -314955,7 +314932,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06055" sboTerm="SBO:0000185" id="MAR06055" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06055" sboTerm="SBO:0000185" id="R_MAR06055" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -314964,7 +314941,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06055">
+            <rdf:Description rdf:about="#R_MAR06055">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/THYOXt2"/>
@@ -314977,10 +314954,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02998c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02998c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02998e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02998e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -314994,7 +314971,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06056" sboTerm="SBO:0000185" id="MAR06056" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06056" sboTerm="SBO:0000185" id="R_MAR06056" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -315003,7 +314980,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06056">
+            <rdf:Description rdf:about="#R_MAR06056">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/TRIODTHYt2"/>
@@ -315016,16 +314993,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03052c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03052c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03052e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03052e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="kar"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06058" sboTerm="SBO:0000185" id="MAR06058" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06058" sboTerm="SBO:0000185" id="R_MAR06058" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -315034,7 +315011,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06058">
+            <rdf:Description rdf:about="#R_MAR06058">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR96797"/>
@@ -315048,16 +315025,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01442e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01442e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01442c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01442c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Prestin"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06059" sboTerm="SBO:0000185" id="MAR06059" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06059" sboTerm="SBO:0000185" id="R_MAR06059" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -315066,7 +315043,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06059">
+            <rdf:Description rdf:about="#R_MAR06059">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/THMt3"/>
@@ -315078,12 +315055,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02982e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02982e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02982c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02982c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -315092,7 +315069,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06060" sboTerm="SBO:0000185" id="MAR06060" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06060" sboTerm="SBO:0000185" id="R_MAR06060" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -315101,7 +315078,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06060">
+            <rdf:Description rdf:about="#R_MAR06060">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106040"/>
@@ -315113,14 +315090,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02026c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02402e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02402e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02026e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02402c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02402c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -315132,7 +315109,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06061" sboTerm="SBO:0000185" id="MAR06061" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06061" sboTerm="SBO:0000185" id="R_MAR06061" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -315141,7 +315118,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06061">
+            <rdf:Description rdf:about="#R_MAR06061">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106041"/>
@@ -315153,14 +315130,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02026c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02965e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02965e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02026e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02965c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02965c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -315172,7 +315149,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06062" sboTerm="SBO:0000185" id="MAR06062" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06062" sboTerm="SBO:0000185" id="R_MAR06062" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -315181,7 +315158,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06062">
+            <rdf:Description rdf:about="#R_MAR06062">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106042"/>
@@ -315193,14 +315170,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02000e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02026c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02000e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02000c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02026e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02000c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -315212,7 +315189,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06063" sboTerm="SBO:0000185" id="MAR06063" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06063" sboTerm="SBO:0000185" id="R_MAR06063" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -315221,7 +315198,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06063">
+            <rdf:Description rdf:about="#R_MAR06063">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106043"/>
@@ -315233,14 +315210,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02026c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03129e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03129e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02026e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03129c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03129c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -315252,7 +315229,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06064" sboTerm="SBO:0000185" id="MAR06064" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06064" sboTerm="SBO:0000185" id="R_MAR06064" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -315261,7 +315238,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06064">
+            <rdf:Description rdf:about="#R_MAR06064">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106044"/>
@@ -315273,14 +315250,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02026c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02966e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02966e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02026e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02966c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02966c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -315292,7 +315269,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06065" sboTerm="SBO:0000185" id="MAR06065" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06065" sboTerm="SBO:0000185" id="R_MAR06065" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -315301,7 +315278,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06065">
+            <rdf:Description rdf:about="#R_MAR06065">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106045"/>
@@ -315313,14 +315290,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02004e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02026c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02004e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02004c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02026e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02004c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -315332,7 +315309,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06066" sboTerm="SBO:0000185" id="MAR06066" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06066" sboTerm="SBO:0000185" id="R_MAR06066" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -315341,7 +315318,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06066">
+            <rdf:Description rdf:about="#R_MAR06066">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106046"/>
@@ -315353,14 +315330,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02026c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02951e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02951e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02026e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02951c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02951c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -315372,7 +315349,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06067" sboTerm="SBO:0000185" id="MAR06067" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06067" sboTerm="SBO:0000185" id="R_MAR06067" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -315381,7 +315358,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06067">
+            <rdf:Description rdf:about="#R_MAR06067">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106047"/>
@@ -315393,14 +315370,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02026c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02952e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02952e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02026e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02952c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02952c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -315412,7 +315389,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06068" sboTerm="SBO:0000185" id="MAR06068" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06068" sboTerm="SBO:0000185" id="R_MAR06068" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -315421,7 +315398,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06068">
+            <rdf:Description rdf:about="#R_MAR06068">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106063"/>
@@ -315433,14 +315410,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01980c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02402e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01980c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02402e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01980e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02402c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01980e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02402c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -315452,7 +315429,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06069" sboTerm="SBO:0000185" id="MAR06069" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06069" sboTerm="SBO:0000185" id="R_MAR06069" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -315461,7 +315438,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06069">
+            <rdf:Description rdf:about="#R_MAR06069">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106064"/>
@@ -315473,14 +315450,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02402e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02900c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02402e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02900c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02402c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02900e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02402c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02900e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -315492,7 +315469,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06070" sboTerm="SBO:0000185" id="MAR06070" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06070" sboTerm="SBO:0000185" id="R_MAR06070" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -315501,7 +315478,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06070">
+            <rdf:Description rdf:about="#R_MAR06070">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106065"/>
@@ -315513,14 +315490,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02402e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02901c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02402e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02901c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02402c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02901e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02402c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02901e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -315532,7 +315509,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06071" sboTerm="SBO:0000185" id="MAR06071" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06071" sboTerm="SBO:0000185" id="R_MAR06071" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -315541,7 +315518,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06071">
+            <rdf:Description rdf:about="#R_MAR06071">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106066"/>
@@ -315553,14 +315530,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01980c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02965e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01980c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02965e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01980e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02965c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01980e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02965c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -315572,7 +315549,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06072" sboTerm="SBO:0000185" id="MAR06072" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06072" sboTerm="SBO:0000185" id="R_MAR06072" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -315581,7 +315558,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06072">
+            <rdf:Description rdf:about="#R_MAR06072">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106067"/>
@@ -315593,14 +315570,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02900c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02965e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02900c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02965e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02900e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02965c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02900e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02965c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -315612,7 +315589,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06073" sboTerm="SBO:0000185" id="MAR06073" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06073" sboTerm="SBO:0000185" id="R_MAR06073" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -315621,7 +315598,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06073">
+            <rdf:Description rdf:about="#R_MAR06073">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106068"/>
@@ -315633,14 +315610,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02901c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02965e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02901c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02965e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02901e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02965c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02901e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02965c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -315652,7 +315629,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06074" sboTerm="SBO:0000185" id="MAR06074" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06074" sboTerm="SBO:0000185" id="R_MAR06074" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -315661,7 +315638,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06074">
+            <rdf:Description rdf:about="#R_MAR06074">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106069"/>
@@ -315673,14 +315650,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01980c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02000e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01980c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02000e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01980e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02000c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01980e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02000c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -315692,7 +315669,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06075" sboTerm="SBO:0000185" id="MAR06075" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06075" sboTerm="SBO:0000185" id="R_MAR06075" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -315701,7 +315678,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06075">
+            <rdf:Description rdf:about="#R_MAR06075">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106070"/>
@@ -315713,14 +315690,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02000e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02900c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02000e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02900c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02000c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02900e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02000c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02900e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -315732,7 +315709,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06076" sboTerm="SBO:0000185" id="MAR06076" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06076" sboTerm="SBO:0000185" id="R_MAR06076" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -315741,7 +315718,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06076">
+            <rdf:Description rdf:about="#R_MAR06076">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106071"/>
@@ -315753,14 +315730,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02000e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02901c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02000e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02901c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02000c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02901e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02000c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02901e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -315772,7 +315749,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06077" sboTerm="SBO:0000185" id="MAR06077" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06077" sboTerm="SBO:0000185" id="R_MAR06077" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -315781,7 +315758,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06077">
+            <rdf:Description rdf:about="#R_MAR06077">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106072"/>
@@ -315793,14 +315770,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01980c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03129e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01980c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03129e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01980e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03129c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01980e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03129c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -315812,7 +315789,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06078" sboTerm="SBO:0000185" id="MAR06078" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06078" sboTerm="SBO:0000185" id="R_MAR06078" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -315821,7 +315798,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06078">
+            <rdf:Description rdf:about="#R_MAR06078">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106073"/>
@@ -315833,14 +315810,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02900c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03129e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02900c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03129e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02900e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03129c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02900e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03129c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -315852,7 +315829,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06079" sboTerm="SBO:0000185" id="MAR06079" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06079" sboTerm="SBO:0000185" id="R_MAR06079" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -315861,7 +315838,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06079">
+            <rdf:Description rdf:about="#R_MAR06079">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106074"/>
@@ -315873,14 +315850,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02901c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03129e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02901c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03129e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02901e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03129c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02901e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03129c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -315892,7 +315869,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06080" sboTerm="SBO:0000185" id="MAR06080" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06080" sboTerm="SBO:0000185" id="R_MAR06080" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -315901,7 +315878,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06080">
+            <rdf:Description rdf:about="#R_MAR06080">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106075"/>
@@ -315913,14 +315890,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01980c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02966e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01980c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02966e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01980e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02966c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01980e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02966c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -315932,7 +315909,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06081" sboTerm="SBO:0000185" id="MAR06081" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06081" sboTerm="SBO:0000185" id="R_MAR06081" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -315941,7 +315918,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06081">
+            <rdf:Description rdf:about="#R_MAR06081">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106076"/>
@@ -315953,14 +315930,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02900c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02966e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02900c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02966e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02900e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02966c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02900e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02966c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -315972,7 +315949,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06082" sboTerm="SBO:0000185" id="MAR06082" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06082" sboTerm="SBO:0000185" id="R_MAR06082" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -315981,7 +315958,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06082">
+            <rdf:Description rdf:about="#R_MAR06082">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106077"/>
@@ -315993,14 +315970,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02901c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02966e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02901c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02966e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02901e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02966c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02901e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02966c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -316012,7 +315989,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06083" sboTerm="SBO:0000185" id="MAR06083" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06083" sboTerm="SBO:0000185" id="R_MAR06083" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -316021,7 +315998,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06083">
+            <rdf:Description rdf:about="#R_MAR06083">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106078"/>
@@ -316033,14 +316010,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01980c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02004e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01980c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02004e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01980e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02004c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01980e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02004c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -316052,7 +316029,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06084" sboTerm="SBO:0000185" id="MAR06084" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06084" sboTerm="SBO:0000185" id="R_MAR06084" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -316061,7 +316038,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06084">
+            <rdf:Description rdf:about="#R_MAR06084">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106079"/>
@@ -316073,14 +316050,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02004e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02900c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02004e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02900c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02004c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02900e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02004c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02900e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -316092,7 +316069,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06085" sboTerm="SBO:0000185" id="MAR06085" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06085" sboTerm="SBO:0000185" id="R_MAR06085" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -316101,7 +316078,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06085">
+            <rdf:Description rdf:about="#R_MAR06085">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106080"/>
@@ -316113,14 +316090,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02004e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02901c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02004e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02901c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02004c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02901e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02004c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02901e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -316132,7 +316109,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06086" sboTerm="SBO:0000185" id="MAR06086" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06086" sboTerm="SBO:0000185" id="R_MAR06086" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -316141,7 +316118,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06086">
+            <rdf:Description rdf:about="#R_MAR06086">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106081"/>
@@ -316153,14 +316130,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01980c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02951e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01980c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02951e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01980e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02951c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01980e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02951c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -316172,7 +316149,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06087" sboTerm="SBO:0000185" id="MAR06087" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06087" sboTerm="SBO:0000185" id="R_MAR06087" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -316181,7 +316158,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06087">
+            <rdf:Description rdf:about="#R_MAR06087">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106082"/>
@@ -316193,14 +316170,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02900c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02951e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02900c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02951e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02900e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02951c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02900e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02951c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -316212,7 +316189,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06088" sboTerm="SBO:0000185" id="MAR06088" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06088" sboTerm="SBO:0000185" id="R_MAR06088" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -316221,7 +316198,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06088">
+            <rdf:Description rdf:about="#R_MAR06088">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106083"/>
@@ -316233,14 +316210,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02901c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02951e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02901c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02951e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02901e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02951c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02901e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02951c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -316252,7 +316229,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06089" sboTerm="SBO:0000185" id="MAR06089" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06089" sboTerm="SBO:0000185" id="R_MAR06089" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -316261,7 +316238,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06089">
+            <rdf:Description rdf:about="#R_MAR06089">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106084"/>
@@ -316273,14 +316250,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01980c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02952e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01980c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02952e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01980e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02952c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01980e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02952c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -316292,7 +316269,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06090" sboTerm="SBO:0000185" id="MAR06090" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06090" sboTerm="SBO:0000185" id="R_MAR06090" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -316301,7 +316278,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06090">
+            <rdf:Description rdf:about="#R_MAR06090">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106085"/>
@@ -316313,14 +316290,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02900c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02952e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02900c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02952e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02900e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02952c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02900e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02952c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -316332,7 +316309,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06091" sboTerm="SBO:0000185" id="MAR06091" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06091" sboTerm="SBO:0000185" id="R_MAR06091" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -316341,7 +316318,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06091">
+            <rdf:Description rdf:about="#R_MAR06091">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106086"/>
@@ -316353,14 +316330,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02901c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02952e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02901c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02952e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02901e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02952c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02901e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02952c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -316372,7 +316349,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06092" sboTerm="SBO:0000185" id="MAR06092" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06092" sboTerm="SBO:0000185" id="R_MAR06092" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -316381,7 +316358,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06092">
+            <rdf:Description rdf:about="#R_MAR06092">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106087"/>
@@ -316393,14 +316370,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01980c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02950e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01980c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02950e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01980e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02950c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01980e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02950c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -316412,7 +316389,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06093" sboTerm="SBO:0000185" id="MAR06093" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06093" sboTerm="SBO:0000185" id="R_MAR06093" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -316421,7 +316398,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06093">
+            <rdf:Description rdf:about="#R_MAR06093">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106088"/>
@@ -316433,14 +316410,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02900c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02950e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02900c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02950e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02900e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02950c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02900e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02950c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -316452,7 +316429,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06094" sboTerm="SBO:0000185" id="MAR06094" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06094" sboTerm="SBO:0000185" id="R_MAR06094" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -316461,7 +316438,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06094">
+            <rdf:Description rdf:about="#R_MAR06094">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106089"/>
@@ -316473,14 +316450,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02901c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02950e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02901c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02950e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02901e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02950c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02901e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02950c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -316492,7 +316469,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06095" sboTerm="SBO:0000185" id="MAR06095" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06095" sboTerm="SBO:0000185" id="R_MAR06095" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -316501,7 +316478,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06095">
+            <rdf:Description rdf:about="#R_MAR06095">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106090"/>
@@ -316513,14 +316490,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01396e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02026c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01396e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01396c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02026e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01396c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -316532,7 +316509,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06096" sboTerm="SBO:0000185" id="MAR06096" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06096" sboTerm="SBO:0000185" id="R_MAR06096" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -316540,7 +316517,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06096">
+            <rdf:Description rdf:about="#R_MAR06096">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/THYOXt"/>
@@ -316552,12 +316529,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02998e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02998e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02998c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02998c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -316570,7 +316547,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06097" sboTerm="SBO:0000185" id="MAR06097" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06097" sboTerm="SBO:0000185" id="R_MAR06097" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -316579,7 +316556,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06097">
+            <rdf:Description rdf:about="#R_MAR06097">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106091"/>
@@ -316591,14 +316568,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02026c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02998e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02998e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02026e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02998c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02998c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -316610,7 +316587,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06098" sboTerm="SBO:0000185" id="MAR06098" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06098" sboTerm="SBO:0000185" id="R_MAR06098" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -316618,7 +316595,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06098">
+            <rdf:Description rdf:about="#R_MAR06098">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/TRIODTHYt"/>
@@ -316630,12 +316607,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03052e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03052e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03052c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03052c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -316648,7 +316625,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06099" sboTerm="SBO:0000185" id="MAR06099" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06099" sboTerm="SBO:0000185" id="R_MAR06099" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -316657,7 +316634,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06099">
+            <rdf:Description rdf:about="#R_MAR06099">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106092"/>
@@ -316669,14 +316646,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02026c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03052e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03052e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02026e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03052c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03052c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -316688,7 +316665,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06100" sboTerm="SBO:0000185" id="MAR06100" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06100" sboTerm="SBO:0000185" id="R_MAR06100" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -316697,7 +316674,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06100">
+            <rdf:Description rdf:about="#R_MAR06100">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106093"/>
@@ -316709,14 +316686,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02026c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02839e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02839e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02026e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02839c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02839c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -316728,7 +316705,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06101" sboTerm="SBO:0000185" id="MAR06101" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06101" sboTerm="SBO:0000185" id="R_MAR06101" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -316736,7 +316713,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06101">
+            <rdf:Description rdf:about="#R_MAR06101">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PROSTGE2t"/>
@@ -316748,12 +316725,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02786e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02786e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02786c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02786c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -316766,7 +316743,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06102" sboTerm="SBO:0000185" id="MAR06102" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06102" sboTerm="SBO:0000185" id="R_MAR06102" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -316775,7 +316752,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06102">
+            <rdf:Description rdf:about="#R_MAR06102">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106094"/>
@@ -316787,14 +316764,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02026c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02786e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02786e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02026e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02786c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02786c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -316806,7 +316783,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06103" sboTerm="SBO:0000185" id="MAR06103" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06103" sboTerm="SBO:0000185" id="R_MAR06103" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -316815,7 +316792,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06103">
+            <rdf:Description rdf:about="#R_MAR06103">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106095"/>
@@ -316827,14 +316804,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02026c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02366e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02366e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02026e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02366c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02366c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -316846,7 +316823,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06104" sboTerm="SBO:0000185" id="MAR06104" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06104" sboTerm="SBO:0000185" id="R_MAR06104" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -316855,7 +316832,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06104">
+            <rdf:Description rdf:about="#R_MAR06104">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106096"/>
@@ -316867,14 +316844,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01397e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02026c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01397e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01397c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02026e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01397c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -316886,7 +316863,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06105" sboTerm="SBO:0000185" id="MAR06105" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06105" sboTerm="SBO:0000185" id="R_MAR06105" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -316895,7 +316872,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06105">
+            <rdf:Description rdf:about="#R_MAR06105">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106097"/>
@@ -316907,14 +316884,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02026c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02995e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02995e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02026e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02995c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02995c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -316926,7 +316903,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06106" sboTerm="SBO:0000185" id="MAR06106" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06106" sboTerm="SBO:0000185" id="R_MAR06106" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -316935,7 +316912,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06106">
+            <rdf:Description rdf:about="#R_MAR06106">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106098"/>
@@ -316947,14 +316924,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02026c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02369e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02369e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02026e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02369c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02369c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -316966,7 +316943,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06107" sboTerm="SBO:0000185" id="MAR06107" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06107" sboTerm="SBO:0000185" id="R_MAR06107" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -316975,7 +316952,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06107">
+            <rdf:Description rdf:about="#R_MAR06107">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106099"/>
@@ -316987,14 +316964,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01398e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02026c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01398e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01398c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02026e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01398c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -317006,7 +316983,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06108" sboTerm="SBO:0000185" id="MAR06108" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06108" sboTerm="SBO:0000185" id="R_MAR06108" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -317015,7 +316992,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06108">
+            <rdf:Description rdf:about="#R_MAR06108">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106100"/>
@@ -317027,14 +317004,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01396e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01980c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01396e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01980c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01396c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01980e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01396c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01980e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -317046,7 +317023,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06109" sboTerm="SBO:0000185" id="MAR06109" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06109" sboTerm="SBO:0000185" id="R_MAR06109" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -317055,7 +317032,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06109">
+            <rdf:Description rdf:about="#R_MAR06109">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106101"/>
@@ -317067,14 +317044,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01396e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02900c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01396e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02900c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01396c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02900e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01396c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02900e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -317086,7 +317063,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06110" sboTerm="SBO:0000185" id="MAR06110" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06110" sboTerm="SBO:0000185" id="R_MAR06110" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -317095,7 +317072,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06110">
+            <rdf:Description rdf:about="#R_MAR06110">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106102"/>
@@ -317107,14 +317084,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01396e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02901c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01396e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02901c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01396c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02901e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01396c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02901e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -317126,7 +317103,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06111" sboTerm="SBO:0000185" id="MAR06111" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06111" sboTerm="SBO:0000185" id="R_MAR06111" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -317135,7 +317112,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06111">
+            <rdf:Description rdf:about="#R_MAR06111">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106103"/>
@@ -317147,14 +317124,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01980c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02998e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01980c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02998e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01980e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02998c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01980e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02998c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -317166,7 +317143,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06112" sboTerm="SBO:0000185" id="MAR06112" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06112" sboTerm="SBO:0000185" id="R_MAR06112" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -317175,7 +317152,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06112">
+            <rdf:Description rdf:about="#R_MAR06112">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106104"/>
@@ -317187,14 +317164,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02900c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02998e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02900c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02998e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02900e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02998c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02900e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02998c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -317206,7 +317183,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06113" sboTerm="SBO:0000185" id="MAR06113" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06113" sboTerm="SBO:0000185" id="R_MAR06113" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -317215,7 +317192,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06113">
+            <rdf:Description rdf:about="#R_MAR06113">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106105"/>
@@ -317227,14 +317204,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02901c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02998e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02901c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02998e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02901e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02998c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02901e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02998c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -317246,7 +317223,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06114" sboTerm="SBO:0000185" id="MAR06114" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06114" sboTerm="SBO:0000185" id="R_MAR06114" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -317255,7 +317232,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06114">
+            <rdf:Description rdf:about="#R_MAR06114">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106106"/>
@@ -317267,14 +317244,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01980c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03052e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01980c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03052e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01980e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03052c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01980e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03052c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -317286,7 +317263,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06115" sboTerm="SBO:0000185" id="MAR06115" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06115" sboTerm="SBO:0000185" id="R_MAR06115" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -317295,7 +317272,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06115">
+            <rdf:Description rdf:about="#R_MAR06115">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106107"/>
@@ -317307,14 +317284,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02900c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03052e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02900c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03052e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02900e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03052c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02900e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03052c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -317326,7 +317303,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06116" sboTerm="SBO:0000185" id="MAR06116" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06116" sboTerm="SBO:0000185" id="R_MAR06116" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -317335,7 +317312,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06116">
+            <rdf:Description rdf:about="#R_MAR06116">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106108"/>
@@ -317347,14 +317324,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02901c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03052e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02901c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03052e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02901e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03052c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02901e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03052c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -317366,7 +317343,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06117" sboTerm="SBO:0000185" id="MAR06117" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06117" sboTerm="SBO:0000185" id="R_MAR06117" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -317375,7 +317352,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06117">
+            <rdf:Description rdf:about="#R_MAR06117">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106109"/>
@@ -317387,14 +317364,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01980c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02839e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01980c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02839e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01980e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02839c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01980e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02839c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -317406,7 +317383,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06118" sboTerm="SBO:0000185" id="MAR06118" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06118" sboTerm="SBO:0000185" id="R_MAR06118" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -317415,7 +317392,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06118">
+            <rdf:Description rdf:about="#R_MAR06118">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106110"/>
@@ -317427,14 +317404,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02839e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02900c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02839e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02900c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02839c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02900e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02839c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02900e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -317446,7 +317423,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06119" sboTerm="SBO:0000185" id="MAR06119" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06119" sboTerm="SBO:0000185" id="R_MAR06119" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -317455,7 +317432,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06119">
+            <rdf:Description rdf:about="#R_MAR06119">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106111"/>
@@ -317467,14 +317444,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02839e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02901c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02839e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02901c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02839c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02901e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02839c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02901e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -317486,7 +317463,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06120" sboTerm="SBO:0000185" id="MAR06120" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06120" sboTerm="SBO:0000185" id="R_MAR06120" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -317495,7 +317472,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06120">
+            <rdf:Description rdf:about="#R_MAR06120">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106112"/>
@@ -317507,14 +317484,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01980c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02786e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01980c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02786e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01980e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02786c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01980e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02786c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -317526,7 +317503,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06121" sboTerm="SBO:0000185" id="MAR06121" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06121" sboTerm="SBO:0000185" id="R_MAR06121" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -317535,7 +317512,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06121">
+            <rdf:Description rdf:about="#R_MAR06121">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106113"/>
@@ -317547,14 +317524,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02786e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02900c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02786e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02900c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02786c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02900e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02786c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02900e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -317566,7 +317543,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06122" sboTerm="SBO:0000185" id="MAR06122" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06122" sboTerm="SBO:0000185" id="R_MAR06122" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -317575,7 +317552,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06122">
+            <rdf:Description rdf:about="#R_MAR06122">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106114"/>
@@ -317587,14 +317564,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02786e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02901c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02786e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02901c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02786c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02901e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02786c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02901e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -317606,7 +317583,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06123" sboTerm="SBO:0000185" id="MAR06123" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06123" sboTerm="SBO:0000185" id="R_MAR06123" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -317615,7 +317592,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06123">
+            <rdf:Description rdf:about="#R_MAR06123">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106115"/>
@@ -317627,14 +317604,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01362e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01980c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01362e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01980c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01362c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01980e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01362c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01980e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -317646,7 +317623,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06124" sboTerm="SBO:0000185" id="MAR06124" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06124" sboTerm="SBO:0000185" id="R_MAR06124" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -317655,7 +317632,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06124">
+            <rdf:Description rdf:about="#R_MAR06124">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106116"/>
@@ -317667,14 +317644,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01362e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02900c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01362e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02900c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01362c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02900e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01362c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02900e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -317686,7 +317663,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06125" sboTerm="SBO:0000185" id="MAR06125" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06125" sboTerm="SBO:0000185" id="R_MAR06125" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -317695,7 +317672,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06125">
+            <rdf:Description rdf:about="#R_MAR06125">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106117"/>
@@ -317707,14 +317684,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01362e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02901c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01362e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02901c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01362c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02901e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01362c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02901e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -317726,7 +317703,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06126" sboTerm="SBO:0000185" id="MAR06126" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06126" sboTerm="SBO:0000185" id="R_MAR06126" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -317735,7 +317712,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06126">
+            <rdf:Description rdf:about="#R_MAR06126">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106118"/>
@@ -317747,14 +317724,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01980c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02366e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01980c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02366e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01980e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02366c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01980e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02366c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -317766,7 +317743,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06127" sboTerm="SBO:0000185" id="MAR06127" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06127" sboTerm="SBO:0000185" id="R_MAR06127" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -317775,7 +317752,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06127">
+            <rdf:Description rdf:about="#R_MAR06127">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106119"/>
@@ -317787,14 +317764,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02366e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02900c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02366e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02900c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02366c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02900e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02366c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02900e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -317806,7 +317783,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06128" sboTerm="SBO:0000185" id="MAR06128" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06128" sboTerm="SBO:0000185" id="R_MAR06128" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -317815,7 +317792,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06128">
+            <rdf:Description rdf:about="#R_MAR06128">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106120"/>
@@ -317827,14 +317804,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02366e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02901c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02366e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02901c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02366c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02901e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02366c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02901e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -317846,7 +317823,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06129" sboTerm="SBO:0000185" id="MAR06129" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06129" sboTerm="SBO:0000185" id="R_MAR06129" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -317854,7 +317831,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06129">
+            <rdf:Description rdf:about="#R_MAR06129">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ESTRONESt"/>
@@ -317866,12 +317843,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01789e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01789e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01789c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01789c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -317884,7 +317861,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06130" sboTerm="SBO:0000185" id="MAR06130" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06130" sboTerm="SBO:0000185" id="R_MAR06130" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -317893,7 +317870,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06130">
+            <rdf:Description rdf:about="#R_MAR06130">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106121"/>
@@ -317905,14 +317882,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01789e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01980c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01789e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01980c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01789c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01980e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01789c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01980e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -317924,7 +317901,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06131" sboTerm="SBO:0000185" id="MAR06131" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06131" sboTerm="SBO:0000185" id="R_MAR06131" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -317933,7 +317910,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06131">
+            <rdf:Description rdf:about="#R_MAR06131">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106122"/>
@@ -317945,14 +317922,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01789e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02900c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01789e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02900c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01789c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02900e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01789c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02900e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -317964,7 +317941,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06132" sboTerm="SBO:0000185" id="MAR06132" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06132" sboTerm="SBO:0000185" id="R_MAR06132" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -317973,7 +317950,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06132">
+            <rdf:Description rdf:about="#R_MAR06132">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106123"/>
@@ -317985,14 +317962,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01789e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02901c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01789e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02901c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01789c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02901e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01789c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02901e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -318004,7 +317981,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06133" sboTerm="SBO:0000185" id="MAR06133" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06133" sboTerm="SBO:0000185" id="R_MAR06133" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -318013,7 +317990,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06133">
+            <rdf:Description rdf:about="#R_MAR06133">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106124"/>
@@ -318025,14 +318002,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01659e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01980c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01659e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01980c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01659c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01980e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01659c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01980e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -318044,7 +318021,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06134" sboTerm="SBO:0000185" id="MAR06134" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06134" sboTerm="SBO:0000185" id="R_MAR06134" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -318053,7 +318030,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06134">
+            <rdf:Description rdf:about="#R_MAR06134">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106125"/>
@@ -318065,14 +318042,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01659e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02900c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01659e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02900c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01659c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02900e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01659c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02900e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -318084,7 +318061,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06135" sboTerm="SBO:0000185" id="MAR06135" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06135" sboTerm="SBO:0000185" id="R_MAR06135" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -318093,7 +318070,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06135">
+            <rdf:Description rdf:about="#R_MAR06135">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106126"/>
@@ -318105,14 +318082,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01659e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02901c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01659e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02901c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01659c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02901e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01659c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02901e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -318124,7 +318101,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06136" sboTerm="SBO:0000185" id="MAR06136" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06136" sboTerm="SBO:0000185" id="R_MAR06136" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -318133,7 +318110,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06136">
+            <rdf:Description rdf:about="#R_MAR06136">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106127"/>
@@ -318145,14 +318122,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01397e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01980c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01397e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01980c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01397c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01980e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01397c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01980e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -318164,7 +318141,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06137" sboTerm="SBO:0000185" id="MAR06137" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06137" sboTerm="SBO:0000185" id="R_MAR06137" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -318173,7 +318150,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06137">
+            <rdf:Description rdf:about="#R_MAR06137">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106128"/>
@@ -318185,14 +318162,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01397e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02900c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01397e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02900c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01397c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02900e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01397c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02900e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -318204,7 +318181,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06138" sboTerm="SBO:0000185" id="MAR06138" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06138" sboTerm="SBO:0000185" id="R_MAR06138" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -318213,7 +318190,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06138">
+            <rdf:Description rdf:about="#R_MAR06138">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106129"/>
@@ -318225,14 +318202,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01397e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02901c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01397e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02901c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01397c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02901e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01397c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02901e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -318244,7 +318221,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06139" sboTerm="SBO:0000185" id="MAR06139" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06139" sboTerm="SBO:0000185" id="R_MAR06139" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -318253,7 +318230,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06139">
+            <rdf:Description rdf:about="#R_MAR06139">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106130"/>
@@ -318265,14 +318242,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01980c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02418e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01980c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02418e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01980e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02418c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01980e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02418c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -318284,7 +318261,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06140" sboTerm="SBO:0000185" id="MAR06140" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06140" sboTerm="SBO:0000185" id="R_MAR06140" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -318293,7 +318270,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06140">
+            <rdf:Description rdf:about="#R_MAR06140">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106131"/>
@@ -318305,14 +318282,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02418e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02900c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02418e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02900c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02418c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02900e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02418c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02900e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -318324,7 +318301,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06141" sboTerm="SBO:0000185" id="MAR06141" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06141" sboTerm="SBO:0000185" id="R_MAR06141" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -318333,7 +318310,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06141">
+            <rdf:Description rdf:about="#R_MAR06141">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106132"/>
@@ -318345,14 +318322,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02418e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02901c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02418e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02901c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02418c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02901e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02418c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02901e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -318364,7 +318341,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06142" sboTerm="SBO:0000185" id="MAR06142" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06142" sboTerm="SBO:0000185" id="R_MAR06142" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -318373,7 +318350,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06142">
+            <rdf:Description rdf:about="#R_MAR06142">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106133"/>
@@ -318384,14 +318361,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00591c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01980e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00591c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01980e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00591e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01980c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00591e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01980c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -318403,7 +318380,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06143" sboTerm="SBO:0000185" id="MAR06143" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06143" sboTerm="SBO:0000185" id="R_MAR06143" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -318412,7 +318389,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06143">
+            <rdf:Description rdf:about="#R_MAR06143">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106134"/>
@@ -318423,14 +318400,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00591c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02900e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00591c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02900e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00591e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02900c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00591e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02900c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -318442,7 +318419,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06144" sboTerm="SBO:0000185" id="MAR06144" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06144" sboTerm="SBO:0000185" id="R_MAR06144" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -318451,7 +318428,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06144">
+            <rdf:Description rdf:about="#R_MAR06144">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106135"/>
@@ -318462,14 +318439,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00591c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02901e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00591c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02901e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00591e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02901c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00591e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02901c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -318481,7 +318458,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06145" sboTerm="SBO:0000185" id="MAR06145" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06145" sboTerm="SBO:0000185" id="R_MAR06145" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -318490,7 +318467,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06145">
+            <rdf:Description rdf:about="#R_MAR06145">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106136"/>
@@ -318502,14 +318479,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01980c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02995e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01980c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02995e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01980e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02995c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01980e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02995c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -318521,7 +318498,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06146" sboTerm="SBO:0000185" id="MAR06146" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06146" sboTerm="SBO:0000185" id="R_MAR06146" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -318530,7 +318507,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06146">
+            <rdf:Description rdf:about="#R_MAR06146">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106137"/>
@@ -318542,14 +318519,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02900c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02995e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02900c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02995e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02900e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02995c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02900e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02995c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -318561,7 +318538,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06147" sboTerm="SBO:0000185" id="MAR06147" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06147" sboTerm="SBO:0000185" id="R_MAR06147" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -318570,7 +318547,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06147">
+            <rdf:Description rdf:about="#R_MAR06147">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106138"/>
@@ -318582,14 +318559,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02901c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02995e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02901c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02995e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02901e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02995c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02901e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02995c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -318601,7 +318578,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06148" sboTerm="SBO:0000185" id="MAR06148" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06148" sboTerm="SBO:0000185" id="R_MAR06148" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -318610,7 +318587,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06148">
+            <rdf:Description rdf:about="#R_MAR06148">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106139"/>
@@ -318622,14 +318599,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01980c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02362e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01980c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02362e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01980e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02362c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01980e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02362c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -318641,7 +318618,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06149" sboTerm="SBO:0000185" id="MAR06149" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06149" sboTerm="SBO:0000185" id="R_MAR06149" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -318650,7 +318627,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06149">
+            <rdf:Description rdf:about="#R_MAR06149">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106140"/>
@@ -318662,14 +318639,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02362e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02900c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02362e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02900c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02362c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02900e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02362c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02900e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -318681,7 +318658,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06150" sboTerm="SBO:0000185" id="MAR06150" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06150" sboTerm="SBO:0000185" id="R_MAR06150" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -318690,7 +318667,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06150">
+            <rdf:Description rdf:about="#R_MAR06150">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106141"/>
@@ -318702,14 +318679,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02362e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02901c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02362e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02901c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02362c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02901e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02362c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02901e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -318721,7 +318698,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06151" sboTerm="SBO:0000185" id="MAR06151" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06151" sboTerm="SBO:0000185" id="R_MAR06151" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -318730,7 +318707,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06151">
+            <rdf:Description rdf:about="#R_MAR06151">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106142"/>
@@ -318742,14 +318719,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01980c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02364e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01980c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02364e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01980e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02364c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01980e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02364c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -318761,7 +318738,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06152" sboTerm="SBO:0000185" id="MAR06152" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06152" sboTerm="SBO:0000185" id="R_MAR06152" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -318770,7 +318747,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06152">
+            <rdf:Description rdf:about="#R_MAR06152">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106143"/>
@@ -318782,14 +318759,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02364e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02900c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02364e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02900c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02364c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02900e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02364c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02900e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -318801,7 +318778,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06153" sboTerm="SBO:0000185" id="MAR06153" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06153" sboTerm="SBO:0000185" id="R_MAR06153" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -318810,7 +318787,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06153">
+            <rdf:Description rdf:about="#R_MAR06153">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106144"/>
@@ -318822,14 +318799,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02364e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02901c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02364e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02901c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02364c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02901e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02364c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02901e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -318841,7 +318818,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06154" sboTerm="SBO:0000185" id="MAR06154" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06154" sboTerm="SBO:0000185" id="R_MAR06154" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -318850,7 +318827,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06154">
+            <rdf:Description rdf:about="#R_MAR06154">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106145"/>
@@ -318862,14 +318839,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01980c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02369e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01980c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02369e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01980e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02369c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01980e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02369c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -318881,7 +318858,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06155" sboTerm="SBO:0000185" id="MAR06155" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06155" sboTerm="SBO:0000185" id="R_MAR06155" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -318890,7 +318867,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06155">
+            <rdf:Description rdf:about="#R_MAR06155">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106146"/>
@@ -318902,14 +318879,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02369e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02900c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02369e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02900c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02369c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02900e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02369c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02900e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -318921,7 +318898,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06156" sboTerm="SBO:0000185" id="MAR06156" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06156" sboTerm="SBO:0000185" id="R_MAR06156" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -318930,7 +318907,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06156">
+            <rdf:Description rdf:about="#R_MAR06156">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106147"/>
@@ -318942,14 +318919,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02369e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02901c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02369e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02901c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02369c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02901e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02369c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02901e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -318961,7 +318938,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06157" sboTerm="SBO:0000185" id="MAR06157" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06157" sboTerm="SBO:0000185" id="R_MAR06157" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -318970,7 +318947,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06157">
+            <rdf:Description rdf:about="#R_MAR06157">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106148"/>
@@ -318982,14 +318959,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01980c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02370e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01980c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02370e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01980e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02370c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01980e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02370c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -319001,7 +318978,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06158" sboTerm="SBO:0000185" id="MAR06158" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06158" sboTerm="SBO:0000185" id="R_MAR06158" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -319010,7 +318987,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06158">
+            <rdf:Description rdf:about="#R_MAR06158">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106149"/>
@@ -319022,14 +318999,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02370e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02900c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02370e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02900c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02370c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02900e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02370c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02900e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -319041,7 +319018,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06159" sboTerm="SBO:0000185" id="MAR06159" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06159" sboTerm="SBO:0000185" id="R_MAR06159" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -319050,7 +319027,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06159">
+            <rdf:Description rdf:about="#R_MAR06159">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106150"/>
@@ -319062,14 +319039,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02370e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02901c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02370e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02901c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02370c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02901e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02370c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02901e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -319081,7 +319058,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06160" sboTerm="SBO:0000185" id="MAR06160" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06160" sboTerm="SBO:0000185" id="R_MAR06160" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -319090,7 +319067,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06160">
+            <rdf:Description rdf:about="#R_MAR06160">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106151"/>
@@ -319102,14 +319079,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01398e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01980c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01398e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01980c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01398c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01980e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01398c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01980e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -319121,7 +319098,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06161" sboTerm="SBO:0000185" id="MAR06161" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06161" sboTerm="SBO:0000185" id="R_MAR06161" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -319130,7 +319107,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06161">
+            <rdf:Description rdf:about="#R_MAR06161">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106152"/>
@@ -319142,14 +319119,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01398e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02900c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01398e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02900c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01398c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02900e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01398c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02900e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -319161,7 +319138,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06162" sboTerm="SBO:0000185" id="MAR06162" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06162" sboTerm="SBO:0000185" id="R_MAR06162" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -319170,7 +319147,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06162">
+            <rdf:Description rdf:about="#R_MAR06162">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106153"/>
@@ -319182,14 +319159,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01398e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02901c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01398e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02901c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01398c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02901e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01398c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02901e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -319201,7 +319178,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06163" sboTerm="SBO:0000185" id="MAR06163" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06163" sboTerm="SBO:0000185" id="R_MAR06163" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -319210,7 +319187,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06163">
+            <rdf:Description rdf:about="#R_MAR06163">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106154"/>
@@ -319222,14 +319199,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01980c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02776e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01980c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02776e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01980e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02776c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01980e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02776c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -319241,7 +319218,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06164" sboTerm="SBO:0000185" id="MAR06164" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06164" sboTerm="SBO:0000185" id="R_MAR06164" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -319250,7 +319227,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06164">
+            <rdf:Description rdf:about="#R_MAR06164">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106155"/>
@@ -319262,14 +319239,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02776e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02900c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02776e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02900c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02776c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02900e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02776c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02900e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -319281,7 +319258,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06165" sboTerm="SBO:0000185" id="MAR06165" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06165" sboTerm="SBO:0000185" id="R_MAR06165" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -319290,7 +319267,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06165">
+            <rdf:Description rdf:about="#R_MAR06165">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106156"/>
@@ -319302,14 +319279,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02776e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02901c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02776e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02901c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02776c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02901e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02776c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02901e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -319321,7 +319298,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06166" sboTerm="SBO:0000185" id="MAR06166" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06166" sboTerm="SBO:0000185" id="R_MAR06166" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -319330,7 +319307,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06166">
+            <rdf:Description rdf:about="#R_MAR06166">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106157"/>
@@ -319342,14 +319319,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01980c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02777e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01980c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02777e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01980e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02777c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01980e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02777c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -319361,7 +319338,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06167" sboTerm="SBO:0000185" id="MAR06167" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06167" sboTerm="SBO:0000185" id="R_MAR06167" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -319370,7 +319347,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06167">
+            <rdf:Description rdf:about="#R_MAR06167">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106158"/>
@@ -319382,14 +319359,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02777e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02900c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02777e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02900c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02777c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02900e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02777c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02900e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -319401,7 +319378,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06168" sboTerm="SBO:0000185" id="MAR06168" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06168" sboTerm="SBO:0000185" id="R_MAR06168" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -319410,7 +319387,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06168">
+            <rdf:Description rdf:about="#R_MAR06168">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106159"/>
@@ -319422,14 +319399,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02777e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02901c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02777e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02901c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02777c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02901e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02777c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02901e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -319441,7 +319418,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06169" sboTerm="SBO:0000185" id="MAR06169" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06169" sboTerm="SBO:0000185" id="R_MAR06169" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -319450,7 +319427,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06169">
+            <rdf:Description rdf:about="#R_MAR06169">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106160"/>
@@ -319462,14 +319439,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01980c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02778e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01980c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02778e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01980e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02778c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01980e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02778c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -319481,7 +319458,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06170" sboTerm="SBO:0000185" id="MAR06170" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06170" sboTerm="SBO:0000185" id="R_MAR06170" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -319490,7 +319467,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06170">
+            <rdf:Description rdf:about="#R_MAR06170">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106161"/>
@@ -319502,14 +319479,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02778e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02900c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02778e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02900c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02778c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02900e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02778c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02900e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -319521,7 +319498,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06171" sboTerm="SBO:0000185" id="MAR06171" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06171" sboTerm="SBO:0000185" id="R_MAR06171" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -319530,7 +319507,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06171">
+            <rdf:Description rdf:about="#R_MAR06171">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106162"/>
@@ -319542,14 +319519,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02778e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02901c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02778e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02901c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02778c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02901e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02778c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02901e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -319561,7 +319538,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06172" sboTerm="SBO:0000185" id="MAR06172" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06172" sboTerm="SBO:0000185" id="R_MAR06172" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -319570,7 +319547,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06172">
+            <rdf:Description rdf:about="#R_MAR06172">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106163"/>
@@ -319582,14 +319559,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01980c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02779e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01980c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02779e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01980e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02779c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01980e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02779c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -319601,7 +319578,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06173" sboTerm="SBO:0000185" id="MAR06173" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06173" sboTerm="SBO:0000185" id="R_MAR06173" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -319610,7 +319587,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06173">
+            <rdf:Description rdf:about="#R_MAR06173">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106164"/>
@@ -319622,14 +319599,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02779e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02900c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02779e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02900c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02779c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02900e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02779c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02900e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -319641,7 +319618,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06174" sboTerm="SBO:0000185" id="MAR06174" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06174" sboTerm="SBO:0000185" id="R_MAR06174" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -319650,7 +319627,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06174">
+            <rdf:Description rdf:about="#R_MAR06174">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106165"/>
@@ -319662,14 +319639,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02779e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02901c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02779e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02901c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02779c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02901e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02779c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02901e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -319681,7 +319658,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06175" sboTerm="SBO:0000185" id="MAR06175" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06175" sboTerm="SBO:0000185" id="R_MAR06175" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -319690,7 +319667,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06175">
+            <rdf:Description rdf:about="#R_MAR06175">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106166"/>
@@ -319702,14 +319679,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01980c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02780e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01980c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02780e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01980e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02780c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01980e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02780c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -319721,7 +319698,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06176" sboTerm="SBO:0000185" id="MAR06176" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06176" sboTerm="SBO:0000185" id="R_MAR06176" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -319730,7 +319707,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06176">
+            <rdf:Description rdf:about="#R_MAR06176">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106167"/>
@@ -319742,14 +319719,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02780e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02900c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02780e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02900c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02780c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02900e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02780c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02900e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -319761,7 +319738,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06177" sboTerm="SBO:0000185" id="MAR06177" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06177" sboTerm="SBO:0000185" id="R_MAR06177" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -319770,7 +319747,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06177">
+            <rdf:Description rdf:about="#R_MAR06177">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106168"/>
@@ -319782,14 +319759,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02780e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02901c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02780e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02901c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02780c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02901e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02780c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02901e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -319801,7 +319778,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06178" sboTerm="SBO:0000185" id="MAR06178" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06178" sboTerm="SBO:0000185" id="R_MAR06178" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -319810,7 +319787,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06178">
+            <rdf:Description rdf:about="#R_MAR06178">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106169"/>
@@ -319822,14 +319799,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01980c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02781e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01980c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02781e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01980e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02781c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01980e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02781c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -319841,7 +319818,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06179" sboTerm="SBO:0000185" id="MAR06179" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06179" sboTerm="SBO:0000185" id="R_MAR06179" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -319850,7 +319827,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06179">
+            <rdf:Description rdf:about="#R_MAR06179">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106170"/>
@@ -319862,14 +319839,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02781e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02900c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02781e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02900c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02781c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02900e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02781c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02900e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -319881,7 +319858,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06180" sboTerm="SBO:0000185" id="MAR06180" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06180" sboTerm="SBO:0000185" id="R_MAR06180" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -319890,7 +319867,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06180">
+            <rdf:Description rdf:about="#R_MAR06180">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106171"/>
@@ -319902,14 +319879,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02781e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02901c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02781e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02901c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02781c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02901e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02781c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02901e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -319921,7 +319898,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06181" sboTerm="SBO:0000185" id="MAR06181" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06181" sboTerm="SBO:0000185" id="R_MAR06181" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -319930,7 +319907,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06181">
+            <rdf:Description rdf:about="#R_MAR06181">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106172"/>
@@ -319942,14 +319919,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01980c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02782e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01980c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02782e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01980e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02782c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01980e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02782c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -319961,7 +319938,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06182" sboTerm="SBO:0000185" id="MAR06182" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06182" sboTerm="SBO:0000185" id="R_MAR06182" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -319970,7 +319947,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06182">
+            <rdf:Description rdf:about="#R_MAR06182">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106173"/>
@@ -319982,14 +319959,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02782e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02900c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02782e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02900c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02782c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02900e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02782c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02900e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -320001,7 +319978,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06183" sboTerm="SBO:0000185" id="MAR06183" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06183" sboTerm="SBO:0000185" id="R_MAR06183" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -320010,7 +319987,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06183">
+            <rdf:Description rdf:about="#R_MAR06183">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106174"/>
@@ -320022,14 +319999,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02782e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02901c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02782e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02901c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02782c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02901e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02782c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02901e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -320041,7 +320018,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06184" sboTerm="SBO:0000185" id="MAR06184" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06184" sboTerm="SBO:0000185" id="R_MAR06184" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -320050,7 +320027,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06184">
+            <rdf:Description rdf:about="#R_MAR06184">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106175"/>
@@ -320062,14 +320039,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01980c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02783e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01980c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02783e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01980e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02783c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01980e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02783c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -320081,7 +320058,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06185" sboTerm="SBO:0000185" id="MAR06185" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06185" sboTerm="SBO:0000185" id="R_MAR06185" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -320090,7 +320067,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06185">
+            <rdf:Description rdf:about="#R_MAR06185">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106176"/>
@@ -320102,14 +320079,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02783e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02900c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02783e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02900c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02783c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02900e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02783c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02900e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -320121,7 +320098,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06186" sboTerm="SBO:0000185" id="MAR06186" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06186" sboTerm="SBO:0000185" id="R_MAR06186" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -320130,7 +320107,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06186">
+            <rdf:Description rdf:about="#R_MAR06186">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106177"/>
@@ -320142,14 +320119,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02783e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02901c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02783e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02901c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02783c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02901e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02783c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02901e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -320161,7 +320138,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06187" sboTerm="SBO:0000185" id="MAR06187" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06187" sboTerm="SBO:0000185" id="R_MAR06187" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -320170,7 +320147,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06187">
+            <rdf:Description rdf:about="#R_MAR06187">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106178"/>
@@ -320182,14 +320159,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01980c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02784e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01980c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02784e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01980e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02784c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01980e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02784c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -320201,7 +320178,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06188" sboTerm="SBO:0000185" id="MAR06188" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06188" sboTerm="SBO:0000185" id="R_MAR06188" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -320210,7 +320187,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06188">
+            <rdf:Description rdf:about="#R_MAR06188">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106179"/>
@@ -320222,14 +320199,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02784e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02900c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02784e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02900c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02784c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02900e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02784c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02900e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -320241,7 +320218,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06189" sboTerm="SBO:0000185" id="MAR06189" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06189" sboTerm="SBO:0000185" id="R_MAR06189" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -320250,7 +320227,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06189">
+            <rdf:Description rdf:about="#R_MAR06189">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106180"/>
@@ -320262,14 +320239,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02784e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02901c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02784e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02901c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02784c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02901e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02784c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02901e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -320281,7 +320258,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06190" sboTerm="SBO:0000185" id="MAR06190" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06190" sboTerm="SBO:0000185" id="R_MAR06190" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -320290,7 +320267,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06190">
+            <rdf:Description rdf:about="#R_MAR06190">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106181"/>
@@ -320302,14 +320279,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01980c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02785e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01980c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02785e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01980e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02785c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01980e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02785c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -320321,7 +320298,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06191" sboTerm="SBO:0000185" id="MAR06191" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06191" sboTerm="SBO:0000185" id="R_MAR06191" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -320330,7 +320307,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06191">
+            <rdf:Description rdf:about="#R_MAR06191">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106182"/>
@@ -320342,14 +320319,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02785e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02900c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02785e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02900c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02785c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02900e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02785c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02900e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -320361,7 +320338,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06192" sboTerm="SBO:0000185" id="MAR06192" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06192" sboTerm="SBO:0000185" id="R_MAR06192" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -320370,7 +320347,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06192">
+            <rdf:Description rdf:about="#R_MAR06192">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106183"/>
@@ -320382,14 +320359,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02785e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02901c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02785e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02901c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02785c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02901e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02785c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02901e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -320401,7 +320378,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06193" sboTerm="SBO:0000185" id="MAR06193" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06193" sboTerm="SBO:0000185" id="R_MAR06193" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -320410,7 +320387,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06193">
+            <rdf:Description rdf:about="#R_MAR06193">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106184"/>
@@ -320422,14 +320399,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01980c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02787e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01980c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02787e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01980e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02787c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01980e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02787c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -320441,7 +320418,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06194" sboTerm="SBO:0000185" id="MAR06194" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06194" sboTerm="SBO:0000185" id="R_MAR06194" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -320450,7 +320427,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06194">
+            <rdf:Description rdf:about="#R_MAR06194">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106185"/>
@@ -320462,14 +320439,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02787e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02900c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02787e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02900c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02787c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02900e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02787c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02900e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -320481,7 +320458,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06195" sboTerm="SBO:0000185" id="MAR06195" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06195" sboTerm="SBO:0000185" id="R_MAR06195" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -320490,7 +320467,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06195">
+            <rdf:Description rdf:about="#R_MAR06195">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106186"/>
@@ -320502,14 +320479,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02787e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02901c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02787e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02901c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02787c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02901e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02787c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02901e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -320521,7 +320498,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06196" sboTerm="SBO:0000185" id="MAR06196" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06196" sboTerm="SBO:0000185" id="R_MAR06196" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -320530,7 +320507,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06196">
+            <rdf:Description rdf:about="#R_MAR06196">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106187"/>
@@ -320542,14 +320519,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01980c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02788e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01980c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02788e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01980e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02788c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01980e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02788c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -320561,7 +320538,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06197" sboTerm="SBO:0000185" id="MAR06197" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06197" sboTerm="SBO:0000185" id="R_MAR06197" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -320570,7 +320547,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06197">
+            <rdf:Description rdf:about="#R_MAR06197">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106188"/>
@@ -320582,14 +320559,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02788e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02900c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02788e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02900c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02788c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02900e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02788c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02900e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -320601,7 +320578,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06198" sboTerm="SBO:0000185" id="MAR06198" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06198" sboTerm="SBO:0000185" id="R_MAR06198" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -320610,7 +320587,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06198">
+            <rdf:Description rdf:about="#R_MAR06198">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106189"/>
@@ -320622,14 +320599,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02788e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02901c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02788e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02901c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02788c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02901e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02788c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02901e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -320641,7 +320618,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06199" sboTerm="SBO:0000185" id="MAR06199" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06199" sboTerm="SBO:0000185" id="R_MAR06199" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -320650,7 +320627,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06199">
+            <rdf:Description rdf:about="#R_MAR06199">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106190"/>
@@ -320662,14 +320639,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01980c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02789e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01980c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02789e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01980e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02789c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01980e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02789c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -320681,7 +320658,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06200" sboTerm="SBO:0000185" id="MAR06200" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06200" sboTerm="SBO:0000185" id="R_MAR06200" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -320690,7 +320667,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06200">
+            <rdf:Description rdf:about="#R_MAR06200">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106191"/>
@@ -320702,14 +320679,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02789e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02900c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02789e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02900c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02789c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02900e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02789c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02900e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -320721,7 +320698,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06201" sboTerm="SBO:0000185" id="MAR06201" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06201" sboTerm="SBO:0000185" id="R_MAR06201" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -320730,7 +320707,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06201">
+            <rdf:Description rdf:about="#R_MAR06201">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106192"/>
@@ -320742,14 +320719,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02789e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02901c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02789e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02901c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02789c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02901e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02789c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02901e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -320761,7 +320738,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06202" sboTerm="SBO:0000185" id="MAR06202" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06202" sboTerm="SBO:0000185" id="R_MAR06202" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -320770,7 +320747,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06202">
+            <rdf:Description rdf:about="#R_MAR06202">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106193"/>
@@ -320782,14 +320759,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01980c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02790e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01980c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02790e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01980e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02790c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01980e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02790c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -320801,7 +320778,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06203" sboTerm="SBO:0000185" id="MAR06203" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06203" sboTerm="SBO:0000185" id="R_MAR06203" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -320810,7 +320787,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06203">
+            <rdf:Description rdf:about="#R_MAR06203">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106194"/>
@@ -320822,14 +320799,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02790e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02900c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02790e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02900c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02790c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02900e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02790c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02900e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -320841,7 +320818,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06204" sboTerm="SBO:0000185" id="MAR06204" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06204" sboTerm="SBO:0000185" id="R_MAR06204" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -320850,7 +320827,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06204">
+            <rdf:Description rdf:about="#R_MAR06204">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106195"/>
@@ -320862,14 +320839,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02790e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02901c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02790e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02901c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02790c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02901e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02790c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02901e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -320881,7 +320858,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06205" sboTerm="SBO:0000185" id="MAR06205" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06205" sboTerm="SBO:0000185" id="R_MAR06205" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -320890,7 +320867,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06205">
+            <rdf:Description rdf:about="#R_MAR06205">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106196"/>
@@ -320902,14 +320879,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01980c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02792e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01980c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02792e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01980e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02792c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01980e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02792c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -320921,7 +320898,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06206" sboTerm="SBO:0000185" id="MAR06206" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06206" sboTerm="SBO:0000185" id="R_MAR06206" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -320930,7 +320907,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06206">
+            <rdf:Description rdf:about="#R_MAR06206">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106197"/>
@@ -320942,14 +320919,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02792e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02900c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02792e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02900c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02792c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02900e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02792c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02900e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -320961,7 +320938,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06207" sboTerm="SBO:0000185" id="MAR06207" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06207" sboTerm="SBO:0000185" id="R_MAR06207" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -320970,7 +320947,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06207">
+            <rdf:Description rdf:about="#R_MAR06207">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106198"/>
@@ -320982,14 +320959,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02792e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02901c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02792e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02901c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02792c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02901e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02792c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02901e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -321001,7 +320978,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06208" sboTerm="SBO:0000185" id="MAR06208" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06208" sboTerm="SBO:0000185" id="R_MAR06208" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -321010,7 +320987,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06208">
+            <rdf:Description rdf:about="#R_MAR06208">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106199"/>
@@ -321022,14 +320999,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01980c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02794e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01980c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02794e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01980e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02794c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01980e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02794c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -321041,7 +321018,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06209" sboTerm="SBO:0000185" id="MAR06209" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06209" sboTerm="SBO:0000185" id="R_MAR06209" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -321050,7 +321027,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06209">
+            <rdf:Description rdf:about="#R_MAR06209">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106200"/>
@@ -321062,14 +321039,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02794e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02900c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02794e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02900c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02794c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02900e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02794c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02900e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -321081,7 +321058,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06210" sboTerm="SBO:0000185" id="MAR06210" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06210" sboTerm="SBO:0000185" id="R_MAR06210" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -321090,7 +321067,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06210">
+            <rdf:Description rdf:about="#R_MAR06210">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106201"/>
@@ -321102,14 +321079,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02794e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02901c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02794e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02901c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02794c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02901e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02794c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02901e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -321121,7 +321098,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06211" sboTerm="SBO:0000185" id="MAR06211" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06211" sboTerm="SBO:0000185" id="R_MAR06211" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -321130,7 +321107,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06211">
+            <rdf:Description rdf:about="#R_MAR06211">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106202"/>
@@ -321142,14 +321119,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01980c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02795e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01980c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02795e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01980e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02795c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01980e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02795c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -321161,7 +321138,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06212" sboTerm="SBO:0000185" id="MAR06212" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06212" sboTerm="SBO:0000185" id="R_MAR06212" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -321170,7 +321147,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06212">
+            <rdf:Description rdf:about="#R_MAR06212">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106203"/>
@@ -321182,14 +321159,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02795e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02900c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02795e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02900c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02795c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02900e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02795c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02900e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -321201,7 +321178,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06213" sboTerm="SBO:0000185" id="MAR06213" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06213" sboTerm="SBO:0000185" id="R_MAR06213" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -321210,7 +321187,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06213">
+            <rdf:Description rdf:about="#R_MAR06213">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106204"/>
@@ -321222,14 +321199,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02795e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02901c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02795e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02901c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02795c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02901e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02795c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02901e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -321241,7 +321218,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06214" sboTerm="SBO:0000185" id="MAR06214" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06214" sboTerm="SBO:0000185" id="R_MAR06214" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -321250,7 +321227,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06214">
+            <rdf:Description rdf:about="#R_MAR06214">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106206"/>
@@ -321262,14 +321239,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02026c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02617e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02617e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02026e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02617c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02617c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -321281,7 +321258,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06215" sboTerm="SBO:0000185" id="MAR06215" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06215" sboTerm="SBO:0000185" id="R_MAR06215" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -321290,7 +321267,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06215">
+            <rdf:Description rdf:about="#R_MAR06215">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106207"/>
@@ -321302,14 +321279,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02026c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02897e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02897e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02026e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02897c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02897c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -321321,7 +321298,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06216" sboTerm="SBO:0000185" id="MAR06216" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06216" sboTerm="SBO:0000185" id="R_MAR06216" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -321330,7 +321307,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06216">
+            <rdf:Description rdf:about="#R_MAR06216">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106208"/>
@@ -321342,14 +321319,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01260e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02026c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01260e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01260c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02026e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01260c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -321361,7 +321338,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06217" sboTerm="SBO:0000185" id="MAR06217" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06217" sboTerm="SBO:0000185" id="R_MAR06217" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -321370,7 +321347,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06217">
+            <rdf:Description rdf:about="#R_MAR06217">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106209"/>
@@ -321382,14 +321359,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01736e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02026c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01736e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01736c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02026e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01736c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -321401,7 +321378,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06218" sboTerm="SBO:0000185" id="MAR06218" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06218" sboTerm="SBO:0000185" id="R_MAR06218" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -321410,7 +321387,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06218">
+            <rdf:Description rdf:about="#R_MAR06218">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106210"/>
@@ -321422,14 +321399,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01362e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02026c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01362e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01362c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02026e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01362c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -321441,7 +321418,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06219" sboTerm="SBO:0000185" id="MAR06219" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06219" sboTerm="SBO:0000185" id="R_MAR06219" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -321450,7 +321427,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06219">
+            <rdf:Description rdf:about="#R_MAR06219">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106211"/>
@@ -321462,14 +321439,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02026c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02418e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02418e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02026e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02418c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02418c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -321481,7 +321458,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06220" sboTerm="SBO:0000185" id="MAR06220" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06220" sboTerm="SBO:0000185" id="R_MAR06220" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -321490,7 +321467,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06220">
+            <rdf:Description rdf:about="#R_MAR06220">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106212"/>
@@ -321501,14 +321478,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00591c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02026e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00591c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00591e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02026c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00591e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -321520,7 +321497,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06221" sboTerm="SBO:0000185" id="MAR06221" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06221" sboTerm="SBO:0000185" id="R_MAR06221" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -321529,7 +321506,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06221">
+            <rdf:Description rdf:about="#R_MAR06221">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106213"/>
@@ -321541,14 +321518,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02026c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02362e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02362e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02026e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02362c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02362c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -321560,7 +321537,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06222" sboTerm="SBO:0000185" id="MAR06222" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06222" sboTerm="SBO:0000185" id="R_MAR06222" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -321569,7 +321546,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06222">
+            <rdf:Description rdf:about="#R_MAR06222">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106214"/>
@@ -321581,14 +321558,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02026c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02364e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02364e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02026e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02364c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02364c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -321600,7 +321577,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06223" sboTerm="SBO:0000185" id="MAR06223" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06223" sboTerm="SBO:0000185" id="R_MAR06223" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -321609,7 +321586,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06223">
+            <rdf:Description rdf:about="#R_MAR06223">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106215"/>
@@ -321621,14 +321598,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02026c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02370e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02370e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02026e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02370c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02370c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -321640,7 +321617,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06224" sboTerm="SBO:0000185" id="MAR06224" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06224" sboTerm="SBO:0000185" id="R_MAR06224" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -321649,7 +321626,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06224">
+            <rdf:Description rdf:about="#R_MAR06224">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106216"/>
@@ -321661,14 +321638,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02026c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02776e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02776e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02026e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02776c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02776c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -321680,7 +321657,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06225" sboTerm="SBO:0000185" id="MAR06225" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06225" sboTerm="SBO:0000185" id="R_MAR06225" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -321689,7 +321666,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06225">
+            <rdf:Description rdf:about="#R_MAR06225">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106217"/>
@@ -321701,14 +321678,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02026c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02777e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02777e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02026e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02777c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02777c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -321720,7 +321697,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06226" sboTerm="SBO:0000185" id="MAR06226" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06226" sboTerm="SBO:0000185" id="R_MAR06226" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -321729,7 +321706,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06226">
+            <rdf:Description rdf:about="#R_MAR06226">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106218"/>
@@ -321741,14 +321718,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02026c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02778e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02778e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02026e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02778c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02778c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -321760,7 +321737,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06227" sboTerm="SBO:0000185" id="MAR06227" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06227" sboTerm="SBO:0000185" id="R_MAR06227" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -321769,7 +321746,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06227">
+            <rdf:Description rdf:about="#R_MAR06227">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106219"/>
@@ -321781,14 +321758,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02026c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02779e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02779e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02026e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02779c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02779c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -321800,7 +321777,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06228" sboTerm="SBO:0000185" id="MAR06228" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06228" sboTerm="SBO:0000185" id="R_MAR06228" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -321809,7 +321786,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06228">
+            <rdf:Description rdf:about="#R_MAR06228">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106220"/>
@@ -321821,14 +321798,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02026c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02780e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02780e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02026e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02780c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02780c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -321840,7 +321817,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06229" sboTerm="SBO:0000185" id="MAR06229" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06229" sboTerm="SBO:0000185" id="R_MAR06229" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -321849,7 +321826,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06229">
+            <rdf:Description rdf:about="#R_MAR06229">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106221"/>
@@ -321861,14 +321838,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02026c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02781e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02781e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02026e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02781c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02781c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -321880,7 +321857,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06230" sboTerm="SBO:0000185" id="MAR06230" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06230" sboTerm="SBO:0000185" id="R_MAR06230" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -321889,7 +321866,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06230">
+            <rdf:Description rdf:about="#R_MAR06230">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106222"/>
@@ -321901,14 +321878,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02026c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02782e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02782e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02026e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02782c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02782c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -321920,7 +321897,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06231" sboTerm="SBO:0000185" id="MAR06231" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06231" sboTerm="SBO:0000185" id="R_MAR06231" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -321929,7 +321906,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06231">
+            <rdf:Description rdf:about="#R_MAR06231">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106223"/>
@@ -321941,14 +321918,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02026c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02783e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02783e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02026e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02783c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02783c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -321960,7 +321937,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06232" sboTerm="SBO:0000185" id="MAR06232" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06232" sboTerm="SBO:0000185" id="R_MAR06232" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -321969,7 +321946,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06232">
+            <rdf:Description rdf:about="#R_MAR06232">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106224"/>
@@ -321981,14 +321958,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02026c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02784e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02784e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02026e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02784c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02784c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -322000,7 +321977,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06233" sboTerm="SBO:0000185" id="MAR06233" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06233" sboTerm="SBO:0000185" id="R_MAR06233" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -322009,7 +321986,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06233">
+            <rdf:Description rdf:about="#R_MAR06233">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106225"/>
@@ -322021,14 +321998,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02026c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02785e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02785e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02026e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02785c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02785c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -322040,7 +322017,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06234" sboTerm="SBO:0000185" id="MAR06234" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06234" sboTerm="SBO:0000185" id="R_MAR06234" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -322049,7 +322026,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06234">
+            <rdf:Description rdf:about="#R_MAR06234">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106226"/>
@@ -322061,14 +322038,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02026c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02787e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02787e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02026e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02787c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02787c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -322080,7 +322057,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06235" sboTerm="SBO:0000185" id="MAR06235" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06235" sboTerm="SBO:0000185" id="R_MAR06235" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -322089,7 +322066,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06235">
+            <rdf:Description rdf:about="#R_MAR06235">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106227"/>
@@ -322101,14 +322078,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02026c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02788e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02788e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02026e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02788c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02788c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -322120,7 +322097,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06236" sboTerm="SBO:0000185" id="MAR06236" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06236" sboTerm="SBO:0000185" id="R_MAR06236" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -322129,7 +322106,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06236">
+            <rdf:Description rdf:about="#R_MAR06236">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106228"/>
@@ -322141,14 +322118,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02026c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02789e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02789e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02026e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02789c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02789c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -322160,7 +322137,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06237" sboTerm="SBO:0000185" id="MAR06237" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06237" sboTerm="SBO:0000185" id="R_MAR06237" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -322169,7 +322146,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06237">
+            <rdf:Description rdf:about="#R_MAR06237">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106229"/>
@@ -322181,14 +322158,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02026c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02790e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02790e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02026e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02790c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02790c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -322200,7 +322177,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06238" sboTerm="SBO:0000185" id="MAR06238" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06238" sboTerm="SBO:0000185" id="R_MAR06238" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -322209,7 +322186,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06238">
+            <rdf:Description rdf:about="#R_MAR06238">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106230"/>
@@ -322221,14 +322198,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02026c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02792e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02792e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02026e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02792c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02792c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -322240,7 +322217,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06239" sboTerm="SBO:0000185" id="MAR06239" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06239" sboTerm="SBO:0000185" id="R_MAR06239" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -322249,7 +322226,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06239">
+            <rdf:Description rdf:about="#R_MAR06239">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106231"/>
@@ -322261,14 +322238,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02026c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02794e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02794e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02026e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02794c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02794c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -322280,7 +322257,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06240" sboTerm="SBO:0000185" id="MAR06240" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06240" sboTerm="SBO:0000185" id="R_MAR06240" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -322289,7 +322266,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06240">
+            <rdf:Description rdf:about="#R_MAR06240">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106232"/>
@@ -322301,14 +322278,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02026c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02795e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02795e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02026e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02795c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02795c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -322320,7 +322297,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06241" sboTerm="SBO:0000185" id="MAR06241" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06241" sboTerm="SBO:0000185" id="R_MAR06241" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -322329,7 +322306,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06241">
+            <rdf:Description rdf:about="#R_MAR06241">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/NRPPHRtu"/>
@@ -322342,10 +322319,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02617c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02617c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02617e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02617e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -322354,7 +322331,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06242" sboTerm="SBO:0000185" id="MAR06242" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06242" sboTerm="SBO:0000185" id="R_MAR06242" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -322362,7 +322339,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06242">
+            <rdf:Description rdf:about="#R_MAR06242">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/NRPPHRt4_2_r"/>
@@ -322373,18 +322350,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02519e" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02617e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02617e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02519c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02617c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02617c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="DAT"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06243" sboTerm="SBO:0000185" id="MAR06243" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06243" sboTerm="SBO:0000185" id="R_MAR06243" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -322393,7 +322370,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06243">
+            <rdf:Description rdf:about="#R_MAR06243">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/SRTNtu"/>
@@ -322406,10 +322383,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02897c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02897c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02897e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02897e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -322418,7 +322395,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06244" sboTerm="SBO:0000185" id="MAR06244" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06244" sboTerm="SBO:0000185" id="R_MAR06244" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -322426,7 +322403,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06244">
+            <rdf:Description rdf:about="#R_MAR06244">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/SRTNt6_2_r"/>
@@ -322437,20 +322414,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02200c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02897e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02200c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02897e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02200e" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02897c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02200e" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02897c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="SerT"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06245" sboTerm="SBO:0000185" id="MAR06245" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06245" sboTerm="SBO:0000185" id="R_MAR06245" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -322459,7 +322436,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06245">
+            <rdf:Description rdf:about="#R_MAR06245">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR95267"/>
@@ -322471,16 +322448,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01260c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01260c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01260e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01260e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG6126"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06246" sboTerm="SBO:0000185" id="MAR06246" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06246" sboTerm="SBO:0000185" id="R_MAR06246" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -322489,7 +322466,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06246">
+            <rdf:Description rdf:about="#R_MAR06246">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/PROSTGE2t2"/>
@@ -322502,10 +322479,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02786e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02786e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02786c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02786c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -322518,7 +322495,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06247" sboTerm="SBO:0000185" id="MAR06247" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06247" sboTerm="SBO:0000185" id="R_MAR06247" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -322527,7 +322504,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06247">
+            <rdf:Description rdf:about="#R_MAR06247">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/PROSTGF2t"/>
@@ -322540,10 +322517,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02789e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02789e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02789c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02789c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -322556,7 +322533,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06248" sboTerm="SBO:0000185" id="MAR06248" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06248" sboTerm="SBO:0000185" id="R_MAR06248" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -322565,7 +322542,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06248">
+            <rdf:Description rdf:about="#R_MAR06248">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106234"/>
@@ -322576,10 +322553,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01789e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01789e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01789c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01789c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -322591,7 +322568,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06249" sboTerm="SBO:0000185" id="MAR06249" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06249" sboTerm="SBO:0000185" id="R_MAR06249" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -322600,7 +322577,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06249">
+            <rdf:Description rdf:about="#R_MAR06249">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR97397"/>
@@ -322611,10 +322588,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01659e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01659e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01659c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01659c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -322626,7 +322603,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06250" sboTerm="SBO:0000185" id="MAR06250" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06250" sboTerm="SBO:0000185" id="R_MAR06250" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -322635,7 +322612,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06250">
+            <rdf:Description rdf:about="#R_MAR06250">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR96253"/>
@@ -322646,10 +322623,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01397c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01397c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01397e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01397e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -322669,7 +322646,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06251" sboTerm="SBO:0000185" id="MAR06251" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06251" sboTerm="SBO:0000185" id="R_MAR06251" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -322678,7 +322655,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06251">
+            <rdf:Description rdf:about="#R_MAR06251">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/LEUKTRD4t"/>
@@ -322688,13 +322665,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02418c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02418c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02418e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02418e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR06252" sboTerm="SBO:0000185" id="MAR06252" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06252" sboTerm="SBO:0000185" id="R_MAR06252" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -322703,7 +322680,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06252">
+            <rdf:Description rdf:about="#R_MAR06252">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106235"/>
@@ -322713,13 +322690,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00591c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00591c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00591e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00591e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR06253" sboTerm="SBO:0000185" id="MAR06253" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06253" sboTerm="SBO:0000185" id="R_MAR06253" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -322728,7 +322705,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06253">
+            <rdf:Description rdf:about="#R_MAR06253">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106236"/>
@@ -322741,10 +322718,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02995c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02995c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02995e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02995e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -322764,7 +322741,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06254" sboTerm="SBO:0000185" id="MAR06254" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06254" sboTerm="SBO:0000185" id="R_MAR06254" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -322773,7 +322750,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06254">
+            <rdf:Description rdf:about="#R_MAR06254">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/LEUKTRA4t"/>
@@ -322783,10 +322760,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02362c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02362c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02362e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02362e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -322806,7 +322783,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06255" sboTerm="SBO:0000185" id="MAR06255" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06255" sboTerm="SBO:0000185" id="R_MAR06255" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -322815,7 +322792,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06255">
+            <rdf:Description rdf:about="#R_MAR06255">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/LEUKTRB4t"/>
@@ -322825,10 +322802,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02364c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02364c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02364e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02364e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -322848,7 +322825,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06256" sboTerm="SBO:0000185" id="MAR06256" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06256" sboTerm="SBO:0000185" id="R_MAR06256" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -322857,7 +322834,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06256">
+            <rdf:Description rdf:about="#R_MAR06256">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/LEUKTRF4t"/>
@@ -322867,10 +322844,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02370c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02370c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02370e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02370e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -322890,7 +322867,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06257" sboTerm="SBO:0000185" id="MAR06257" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06257" sboTerm="SBO:0000185" id="R_MAR06257" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -322899,7 +322876,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06257">
+            <rdf:Description rdf:about="#R_MAR06257">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106237"/>
@@ -322910,10 +322887,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02839c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02839c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02839e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02839e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -322926,7 +322903,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06258" sboTerm="SBO:0000185" id="MAR06258" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06258" sboTerm="SBO:0000185" id="R_MAR06258" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -322935,7 +322912,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06258">
+            <rdf:Description rdf:about="#R_MAR06258">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR96257"/>
@@ -322946,10 +322923,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01398c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01398c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01398e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01398e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -322969,7 +322946,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06259" sboTerm="SBO:0000185" id="MAR06259" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06259" sboTerm="SBO:0000185" id="R_MAR06259" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -322978,7 +322955,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06259">
+            <rdf:Description rdf:about="#R_MAR06259">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106238"/>
@@ -322989,10 +322966,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02776c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02776c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02776e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02776e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -323012,7 +322989,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06260" sboTerm="SBO:0000185" id="MAR06260" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06260" sboTerm="SBO:0000185" id="R_MAR06260" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -323021,7 +322998,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06260">
+            <rdf:Description rdf:about="#R_MAR06260">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106239"/>
@@ -323033,13 +323010,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02777c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02777c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02777e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02777e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR06261" sboTerm="SBO:0000185" id="MAR06261" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06261" sboTerm="SBO:0000185" id="R_MAR06261" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -323048,7 +323025,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06261">
+            <rdf:Description rdf:about="#R_MAR06261">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106240"/>
@@ -323059,10 +323036,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02778c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02778c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02778e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02778e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -323082,7 +323059,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06262" sboTerm="SBO:0000185" id="MAR06262" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06262" sboTerm="SBO:0000185" id="R_MAR06262" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -323091,7 +323068,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06262">
+            <rdf:Description rdf:about="#R_MAR06262">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106241"/>
@@ -323102,10 +323079,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02779c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02779c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02779e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02779e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -323125,7 +323102,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06263" sboTerm="SBO:0000185" id="MAR06263" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06263" sboTerm="SBO:0000185" id="R_MAR06263" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -323134,7 +323111,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06263">
+            <rdf:Description rdf:about="#R_MAR06263">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106242"/>
@@ -323145,10 +323122,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02780c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02780c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02780e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02780e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -323168,7 +323145,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06264" sboTerm="SBO:0000185" id="MAR06264" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06264" sboTerm="SBO:0000185" id="R_MAR06264" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -323177,7 +323154,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06264">
+            <rdf:Description rdf:about="#R_MAR06264">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106243"/>
@@ -323188,10 +323165,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02781c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02781c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02781e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02781e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -323211,7 +323188,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06265" sboTerm="SBO:0000185" id="MAR06265" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06265" sboTerm="SBO:0000185" id="R_MAR06265" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -323220,7 +323197,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06265">
+            <rdf:Description rdf:about="#R_MAR06265">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106244"/>
@@ -323231,10 +323208,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02782c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02782c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02782e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02782e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -323254,7 +323231,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06266" sboTerm="SBO:0000185" id="MAR06266" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06266" sboTerm="SBO:0000185" id="R_MAR06266" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -323263,7 +323240,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06266">
+            <rdf:Description rdf:about="#R_MAR06266">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106245"/>
@@ -323276,10 +323253,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02783e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02783e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02783c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02783c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -323291,7 +323268,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06267" sboTerm="SBO:0000185" id="MAR06267" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06267" sboTerm="SBO:0000185" id="R_MAR06267" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -323300,7 +323277,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06267">
+            <rdf:Description rdf:about="#R_MAR06267">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106246"/>
@@ -323311,10 +323288,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02784c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02784c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02784e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02784e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -323334,7 +323311,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06268" sboTerm="SBO:0000185" id="MAR06268" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06268" sboTerm="SBO:0000185" id="R_MAR06268" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -323343,7 +323320,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06268">
+            <rdf:Description rdf:about="#R_MAR06268">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106247"/>
@@ -323356,10 +323333,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02785e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02785e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02785c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02785c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -323371,7 +323348,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06269" sboTerm="SBO:0000185" id="MAR06269" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06269" sboTerm="SBO:0000185" id="R_MAR06269" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -323380,7 +323357,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06269">
+            <rdf:Description rdf:about="#R_MAR06269">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106248"/>
@@ -323392,13 +323369,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02787c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02787c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02787e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02787e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR06270" sboTerm="SBO:0000185" id="MAR06270" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06270" sboTerm="SBO:0000185" id="R_MAR06270" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -323407,7 +323384,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06270">
+            <rdf:Description rdf:about="#R_MAR06270">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106249"/>
@@ -323418,10 +323395,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02788c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02788c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02788e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02788e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -323441,7 +323418,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06271" sboTerm="SBO:0000185" id="MAR06271" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06271" sboTerm="SBO:0000185" id="R_MAR06271" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -323450,7 +323427,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06271">
+            <rdf:Description rdf:about="#R_MAR06271">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106250"/>
@@ -323461,10 +323438,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02790c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02790c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02790e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02790e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -323484,7 +323461,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06272" sboTerm="SBO:0000185" id="MAR06272" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06272" sboTerm="SBO:0000185" id="R_MAR06272" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -323493,7 +323470,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06272">
+            <rdf:Description rdf:about="#R_MAR06272">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106251"/>
@@ -323504,10 +323481,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02792c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02792c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02792e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02792e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -323527,7 +323504,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06273" sboTerm="SBO:0000185" id="MAR06273" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06273" sboTerm="SBO:0000185" id="R_MAR06273" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -323536,7 +323513,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06273">
+            <rdf:Description rdf:about="#R_MAR06273">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106252"/>
@@ -323547,10 +323524,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02794c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02794c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02794e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02794e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -323570,7 +323547,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06274" sboTerm="SBO:0000185" id="MAR06274" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06274" sboTerm="SBO:0000185" id="R_MAR06274" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -323579,7 +323556,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06274">
+            <rdf:Description rdf:about="#R_MAR06274">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR103207"/>
@@ -323590,10 +323567,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02795c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02795c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02795e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02795e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -323613,7 +323590,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06275" sboTerm="SBO:0000185" id="MAR06275" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06275" sboTerm="SBO:0000185" id="R_MAR06275" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -323622,7 +323599,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06275">
+            <rdf:Description rdf:about="#R_MAR06275">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR96050"/>
@@ -323634,18 +323611,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01368e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01368e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="2" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01368c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01368c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="2" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG6293"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06351" sboTerm="SBO:0000185" id="MAR06351" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06351" sboTerm="SBO:0000185" id="R_MAR06351" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -323654,7 +323631,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06351">
+            <rdf:Description rdf:about="#R_MAR06351">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/URIt4"/>
@@ -323667,12 +323644,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03123e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03123e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03123c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03123c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -323681,7 +323658,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06352" sboTerm="SBO:0000185" id="MAR06352" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06352" sboTerm="SBO:0000185" id="R_MAR06352" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -323690,7 +323667,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06352">
+            <rdf:Description rdf:about="#R_MAR06352">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106295"/>
@@ -323702,12 +323679,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01673e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01673e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01673c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01673c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -323716,7 +323693,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06353" sboTerm="SBO:0000185" id="MAR06353" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06353" sboTerm="SBO:0000185" id="R_MAR06353" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -323725,7 +323702,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06353">
+            <rdf:Description rdf:about="#R_MAR06353">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/INSt4"/>
@@ -323738,12 +323715,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02170e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02170e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02170c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02170c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -323752,7 +323729,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06354" sboTerm="SBO:0000185" id="MAR06354" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06354" sboTerm="SBO:0000185" id="R_MAR06354" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -323761,7 +323738,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06354">
+            <rdf:Description rdf:about="#R_MAR06354">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106296"/>
@@ -323773,12 +323750,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01671e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01671e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01671c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01671c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -323787,7 +323764,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06355" sboTerm="SBO:0000185" id="MAR06355" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06355" sboTerm="SBO:0000185" id="R_MAR06355" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -323796,7 +323773,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06355">
+            <rdf:Description rdf:about="#R_MAR06355">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ADNt5"/>
@@ -323809,18 +323786,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01280e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01280e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="2" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01280c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01280c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="2" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CNT1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06356" sboTerm="SBO:0000185" id="MAR06356" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06356" sboTerm="SBO:0000185" id="R_MAR06356" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -323829,7 +323806,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06356">
+            <rdf:Description rdf:about="#R_MAR06356">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/THMDt5"/>
@@ -323842,18 +323819,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02519e" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02996e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02996e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02519c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02996c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02996c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CNT1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06357" sboTerm="SBO:0000185" id="MAR06357" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06357" sboTerm="SBO:0000185" id="R_MAR06357" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -323862,7 +323839,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06357">
+            <rdf:Description rdf:about="#R_MAR06357">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/INSt5"/>
@@ -323875,18 +323852,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02170e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02170e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="2" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02170c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02170c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="2" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CNT1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06358" sboTerm="SBO:0000185" id="MAR06358" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06358" sboTerm="SBO:0000185" id="R_MAR06358" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -323895,7 +323872,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06358">
+            <rdf:Description rdf:about="#R_MAR06358">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/URIt5"/>
@@ -323908,18 +323885,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02519e" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03123e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03123e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02519c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03123c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03123c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CNT1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06359" sboTerm="SBO:0000185" id="MAR06359" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06359" sboTerm="SBO:0000185" id="R_MAR06359" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -323928,7 +323905,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06359">
+            <rdf:Description rdf:about="#R_MAR06359">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_6359"/>
@@ -323939,18 +323916,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01669e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01669e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="2" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01669c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01669c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="2" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CNT1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06360" sboTerm="SBO:0000185" id="MAR06360" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06360" sboTerm="SBO:0000185" id="R_MAR06360" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -323959,7 +323936,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06360">
+            <rdf:Description rdf:about="#R_MAR06360">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GSNt5"/>
@@ -323972,18 +323949,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02038e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02038e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="2" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02038c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02038c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="2" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CNT1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06361" sboTerm="SBO:0000185" id="MAR06361" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06361" sboTerm="SBO:0000185" id="R_MAR06361" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -323992,7 +323969,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06361">
+            <rdf:Description rdf:about="#R_MAR06361">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CYTDt5"/>
@@ -324005,18 +323982,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01630e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01630e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="2" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01630c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="2" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CNT1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06362" sboTerm="SBO:0000185" id="MAR06362" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06362" sboTerm="SBO:0000185" id="R_MAR06362" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -324025,7 +324002,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06362">
+            <rdf:Description rdf:about="#R_MAR06362">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_6362"/>
@@ -324036,18 +324013,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01673e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01673e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="2" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01673c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01673c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="2" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CNT1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06363" sboTerm="SBO:0000185" id="MAR06363" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06363" sboTerm="SBO:0000185" id="R_MAR06363" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -324056,7 +324033,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06363">
+            <rdf:Description rdf:about="#R_MAR06363">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_6363"/>
@@ -324067,18 +324044,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01666e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01666e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="2" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01666c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01666c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="2" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CNT1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06364" sboTerm="SBO:0000185" id="MAR06364" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06364" sboTerm="SBO:0000185" id="R_MAR06364" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -324087,7 +324064,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06364">
+            <rdf:Description rdf:about="#R_MAR06364">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_6364"/>
@@ -324098,18 +324075,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01668e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01668e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="2" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01668c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01668c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="2" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CNT1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06365" sboTerm="SBO:0000185" id="MAR06365" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06365" sboTerm="SBO:0000185" id="R_MAR06365" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -324118,7 +324095,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06365">
+            <rdf:Description rdf:about="#R_MAR06365">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_6365"/>
@@ -324129,18 +324106,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01671e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01671e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="2" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01671c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01671c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="2" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CNT1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06366" sboTerm="SBO:0000185" id="MAR06366" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06366" sboTerm="SBO:0000185" id="R_MAR06366" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -324149,7 +324126,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06366">
+            <rdf:Description rdf:about="#R_MAR06366">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/DGSNt"/>
@@ -324162,16 +324139,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01669c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01669c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01669e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01669e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Ent1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06367" sboTerm="SBO:0000185" id="MAR06367" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06367" sboTerm="SBO:0000185" id="R_MAR06367" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -324180,7 +324157,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06367">
+            <rdf:Description rdf:about="#R_MAR06367">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/DADNt4"/>
@@ -324193,16 +324170,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01666c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01666c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01666e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01666e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Ent1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06368" sboTerm="SBO:0000185" id="MAR06368" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06368" sboTerm="SBO:0000185" id="R_MAR06368" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -324211,7 +324188,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06368">
+            <rdf:Description rdf:about="#R_MAR06368">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/DCYTt"/>
@@ -324224,16 +324201,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01668c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01668c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01668e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01668e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Ent1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06369" sboTerm="SBO:0000185" id="MAR06369" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06369" sboTerm="SBO:0000185" id="R_MAR06369" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -324242,7 +324219,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06369">
+            <rdf:Description rdf:about="#R_MAR06369">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/DINt"/>
@@ -324255,16 +324232,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01671c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01671c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01671e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01671e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Ent1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06370" sboTerm="SBO:0000185" id="MAR06370" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06370" sboTerm="SBO:0000185" id="R_MAR06370" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -324273,7 +324250,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06370">
+            <rdf:Description rdf:about="#R_MAR06370">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105280"/>
@@ -324285,16 +324262,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03157c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03157c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03157e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03157e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="ZnT63C"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06371" sboTerm="SBO:0000185" id="MAR06371" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06371" sboTerm="SBO:0000185" id="R_MAR06371" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -324303,7 +324280,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06371">
+            <rdf:Description rdf:about="#R_MAR06371">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GLYt2r"/>
@@ -324318,18 +324295,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01986e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01986c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG13384"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06372" sboTerm="SBO:0000185" id="MAR06372" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06372" sboTerm="SBO:0000185" id="R_MAR06372" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -324338,7 +324315,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06372">
+            <rdf:Description rdf:about="#R_MAR06372">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ALAt2r"/>
@@ -324351,18 +324328,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01307e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01307e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01307c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01307c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG13384"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06373" sboTerm="SBO:0000185" id="MAR06373" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06373" sboTerm="SBO:0000185" id="R_MAR06373" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -324371,7 +324348,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06373">
+            <rdf:Description rdf:about="#R_MAR06373">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PROt2r"/>
@@ -324384,18 +324361,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02770e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02770e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02770c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02770c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG13384"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06374" sboTerm="SBO:0000185" id="MAR06374" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06374" sboTerm="SBO:0000185" id="R_MAR06374" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -324404,7 +324381,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06374">
+            <rdf:Description rdf:about="#R_MAR06374">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR104352"/>
@@ -324416,18 +324393,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02896e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02896e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02896c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02896c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG13384"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06375" sboTerm="SBO:0000185" id="MAR06375" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06375" sboTerm="SBO:0000185" id="R_MAR06375" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -324436,7 +324413,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06375">
+            <rdf:Description rdf:about="#R_MAR06375">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/SERt4"/>
@@ -324449,12 +324426,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02896e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02896e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02896c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02896c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -324464,7 +324441,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06377" sboTerm="SBO:0000185" id="MAR06377" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06377" sboTerm="SBO:0000185" id="R_MAR06377" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -324473,7 +324450,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06377">
+            <rdf:Description rdf:about="#R_MAR06377">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CYSt4"/>
@@ -324486,12 +324463,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01628e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01628e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01628c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01628c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -324501,7 +324478,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06379" sboTerm="SBO:0000185" id="MAR06379" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06379" sboTerm="SBO:0000185" id="R_MAR06379" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -324510,7 +324487,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06379">
+            <rdf:Description rdf:about="#R_MAR06379">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/HOMt4"/>
@@ -324523,18 +324500,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02136e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02136e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02136c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02136c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="slif"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06380" sboTerm="SBO:0000185" id="MAR06380" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06380" sboTerm="SBO:0000185" id="R_MAR06380" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -324543,7 +324520,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06380">
+            <rdf:Description rdf:about="#R_MAR06380">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GLNt4"/>
@@ -324555,14 +324532,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01975e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01975e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01975c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01975c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -324571,7 +324548,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06381" sboTerm="SBO:0000185" id="MAR06381" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06381" sboTerm="SBO:0000185" id="R_MAR06381" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -324580,7 +324557,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06381">
+            <rdf:Description rdf:about="#R_MAR06381">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/SERt4"/>
@@ -324592,14 +324569,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02896e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02896e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02896c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02896c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -324608,7 +324585,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06382" sboTerm="SBO:0000185" id="MAR06382" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06382" sboTerm="SBO:0000185" id="R_MAR06382" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -324617,7 +324594,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06382">
+            <rdf:Description rdf:about="#R_MAR06382">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ASNt4"/>
@@ -324629,14 +324606,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01369e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01369e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01369c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01369c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -324645,7 +324622,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06383" sboTerm="SBO:0000185" id="MAR06383" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06383" sboTerm="SBO:0000185" id="R_MAR06383" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -324654,7 +324631,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06383">
+            <rdf:Description rdf:about="#R_MAR06383">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/HOMt4"/>
@@ -324666,20 +324643,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02136e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02136e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02136c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02136c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="slif"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06384" sboTerm="SBO:0000185" id="MAR06384" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06384" sboTerm="SBO:0000185" id="R_MAR06384" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -324688,7 +324665,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06384">
+            <rdf:Description rdf:about="#R_MAR06384">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/HISt4"/>
@@ -324701,14 +324678,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02125e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02125e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02125c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02125c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -324717,7 +324694,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06392" sboTerm="SBO:0000185" id="MAR06392" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06392" sboTerm="SBO:0000185" id="R_MAR06392" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -324726,7 +324703,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06392">
+            <rdf:Description rdf:about="#R_MAR06392">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106316"/>
@@ -324738,21 +324715,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02952c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02952c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02952e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02952e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="MRP"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06406" sboTerm="SBO:0000185" id="MAR06406" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06406" sboTerm="SBO:0000185" id="R_MAR06406" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -324761,7 +324738,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06406">
+            <rdf:Description rdf:about="#R_MAR06406">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/LIPOti"/>
@@ -324772,17 +324749,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02394e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02394e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="2" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02394c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02394c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -324791,7 +324768,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06424" sboTerm="SBO:0000185" id="MAR06424" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06424" sboTerm="SBO:0000185" id="R_MAR06424" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -324799,7 +324776,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06424">
+            <rdf:Description rdf:about="#R_MAR06424">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/AVITE2t"/>
@@ -324811,13 +324788,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01330c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01330c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01330e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01330e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR06439" sboTerm="SBO:0000185" id="MAR06439" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06439" sboTerm="SBO:0000185" id="R_MAR06439" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -324825,7 +324802,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06439">
+            <rdf:Description rdf:about="#R_MAR06439">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_6439"/>
@@ -324835,13 +324812,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01938e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01938e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01938c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01938c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR06462" sboTerm="SBO:0000185" id="MAR06462" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06462" sboTerm="SBO:0000185" id="R_MAR06462" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -324849,7 +324826,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06462">
+            <rdf:Description rdf:about="#R_MAR06462">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/YVITEt"/>
@@ -324859,13 +324836,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01935c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01935c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01935e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01935e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR06474" sboTerm="SBO:0000185" id="MAR06474" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06474" sboTerm="SBO:0000185" id="R_MAR06474" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -324873,7 +324850,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06474">
+            <rdf:Description rdf:about="#R_MAR06474">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/AVITE1t"/>
@@ -324885,10 +324862,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01327c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01327c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01327e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01327e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:and>
@@ -324902,7 +324879,7 @@
           </fbc:and>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06505" sboTerm="SBO:0000185" id="MAR06505" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06505" sboTerm="SBO:0000185" id="R_MAR06505" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -324910,7 +324887,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06505">
+            <rdf:Description rdf:about="#R_MAR06505">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR104033"/>
@@ -324923,13 +324900,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02842c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02842c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02842e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02842e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR06512" sboTerm="SBO:0000185" id="MAR06512" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06512" sboTerm="SBO:0000185" id="R_MAR06512" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -324938,7 +324915,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06512">
+            <rdf:Description rdf:about="#R_MAR06512">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR99217"/>
@@ -324949,10 +324926,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01802c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01802c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01802e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01802e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -324967,7 +324944,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06514" sboTerm="SBO:0000185" id="MAR06514" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06514" sboTerm="SBO:0000185" id="R_MAR06514" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -324975,7 +324952,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06514">
+            <rdf:Description rdf:about="#R_MAR06514">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/TCYNTt"/>
@@ -324985,13 +324962,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02986c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02986c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02986e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02986e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR06516" sboTerm="SBO:0000185" id="MAR06516" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06516" sboTerm="SBO:0000185" id="R_MAR06516" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -324999,7 +324976,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06516">
+            <rdf:Description rdf:about="#R_MAR06516">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CYANt"/>
@@ -325011,13 +324988,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02145c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02145c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02145e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02145e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR06524" sboTerm="SBO:0000185" id="MAR06524" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06524" sboTerm="SBO:0000185" id="R_MAR06524" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -325025,7 +325002,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06524">
+            <rdf:Description rdf:about="#R_MAR06524">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/NCCt"/>
@@ -325035,18 +325012,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01442e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01442e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01442c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01442c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Ncc69"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06525" sboTerm="SBO:0000185" id="MAR06525" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06525" sboTerm="SBO:0000185" id="R_MAR06525" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -325054,7 +325031,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06525">
+            <rdf:Description rdf:about="#R_MAR06525">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HCO3_CLt"/>
@@ -325064,12 +325041,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01442e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01442e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01442c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01442c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -325080,7 +325057,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06526" sboTerm="SBO:0000185" id="MAR06526" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06526" sboTerm="SBO:0000185" id="R_MAR06526" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -325088,7 +325065,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06526">
+            <rdf:Description rdf:about="#R_MAR06526">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/NKCC2t"/>
@@ -325099,20 +325076,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01442e" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02579e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01442e" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02579e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01442c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02579c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01442c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02579c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Ncc69"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06527" sboTerm="SBO:0000185" id="MAR06527" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06527" sboTerm="SBO:0000185" id="R_MAR06527" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -325120,7 +325097,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06527">
+            <rdf:Description rdf:about="#R_MAR06527">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/KCC2t"/>
@@ -325130,18 +325107,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01442e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02579e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01442e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02579e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01442c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02579c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01442c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02579c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="kcc"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06529" sboTerm="SBO:0000185" id="MAR06529" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06529" sboTerm="SBO:0000185" id="R_MAR06529" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -325149,7 +325126,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06529">
+            <rdf:Description rdf:about="#R_MAR06529">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/CLFORtex"/>
@@ -325159,18 +325136,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01442e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01833c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01442e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01833c" stoichiometry="2" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01442c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01833e" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01442c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01833e" stoichiometry="2" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Prestin"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06530" sboTerm="SBO:0000185" id="MAR06530" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06530" sboTerm="SBO:0000185" id="R_MAR06530" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -325178,7 +325155,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06530">
+            <rdf:Description rdf:about="#R_MAR06530">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/SO4CLtex2"/>
@@ -325188,18 +325165,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01442e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02946c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01442e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02946c" stoichiometry="2" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01442c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02946e" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01442c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02946e" stoichiometry="2" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Prestin"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06531" sboTerm="SBO:0000185" id="MAR06531" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06531" sboTerm="SBO:0000185" id="R_MAR06531" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -325207,7 +325184,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06531">
+            <rdf:Description rdf:about="#R_MAR06531">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/CLOXAtex2"/>
@@ -325217,18 +325194,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01442e" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02661c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01442e" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02661c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01442c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02661e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01442c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02661e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Prestin"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06532" sboTerm="SBO:0000185" id="MAR06532" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06532" sboTerm="SBO:0000185" id="R_MAR06532" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -325236,7 +325213,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06532">
+            <rdf:Description rdf:about="#R_MAR06532">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/CLHCO3tex2"/>
@@ -325246,12 +325223,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01442e" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01442e" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01442c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01442c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -325260,7 +325237,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06533" sboTerm="SBO:0000185" id="MAR06533" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06533" sboTerm="SBO:0000185" id="R_MAR06533" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -325268,7 +325245,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06533">
+            <rdf:Description rdf:about="#R_MAR06533">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_6533"/>
@@ -325278,18 +325255,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01442e" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02147c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01442e" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02147c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01442c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02147e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01442c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02147e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Prestin"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06534" sboTerm="SBO:0000185" id="MAR06534" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06534" sboTerm="SBO:0000185" id="R_MAR06534" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -325297,7 +325274,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06534">
+            <rdf:Description rdf:about="#R_MAR06534">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_6534"/>
@@ -325307,18 +325284,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01442e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01442e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="2" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01442c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046e" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01442c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="2" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Prestin"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06732" sboTerm="SBO:0000185" id="MAR06732" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06732" sboTerm="SBO:0000185" id="R_MAR06732" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -325327,7 +325304,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06732">
+            <rdf:Description rdf:about="#R_MAR06732">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/DOPAtu"/>
@@ -325342,10 +325319,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01736c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01736c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01736e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01736e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -325354,7 +325331,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06733" sboTerm="SBO:0000185" id="MAR06733" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06733" sboTerm="SBO:0000185" id="R_MAR06733" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -325362,7 +325339,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06733">
+            <rdf:Description rdf:about="#R_MAR06733">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/DOPAt4_2_r"/>
@@ -325373,18 +325350,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01736e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01736e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="2" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01736c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01736c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="2" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="DAT"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06989" sboTerm="SBO:0000185" id="MAR06989" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06989" sboTerm="SBO:0000185" id="R_MAR06989" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -325392,7 +325369,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06989">
+            <rdf:Description rdf:about="#R_MAR06989">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_6989"/>
@@ -325402,18 +325379,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02174e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02174e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02174c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02174c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG10444"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06991" sboTerm="SBO:0000185" id="MAR06991" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06991" sboTerm="SBO:0000185" id="R_MAR06991" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -325421,7 +325398,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06991">
+            <rdf:Description rdf:about="#R_MAR06991">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_6991"/>
@@ -325433,13 +325410,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02588c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02588c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02588e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02588e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07109" sboTerm="SBO:0000185" id="MAR07109" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07109" sboTerm="SBO:0000185" id="R_MAR07109" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -325447,7 +325424,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07109">
+            <rdf:Description rdf:about="#R_MAR07109">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_7109"/>
@@ -325457,13 +325434,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01374e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01374e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01374c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01374c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07111" sboTerm="SBO:0000185" id="MAR07111" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07111" sboTerm="SBO:0000185" id="R_MAR07111" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -325471,7 +325448,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07111">
+            <rdf:Description rdf:about="#R_MAR07111">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/NPTHLte"/>
@@ -325481,13 +325458,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02556e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02556e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02556c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02556c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07113" sboTerm="SBO:0000185" id="MAR07113" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07113" sboTerm="SBO:0000185" id="R_MAR07113" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -325495,7 +325472,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07113">
+            <rdf:Description rdf:about="#R_MAR07113">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/AFLATOXINte"/>
@@ -325505,13 +325482,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01296e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01296e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01296c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01296c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07115" sboTerm="SBO:0000185" id="MAR07115" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07115" sboTerm="SBO:0000185" id="R_MAR07115" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -325519,7 +325496,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07115">
+            <rdf:Description rdf:about="#R_MAR07115">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_7115"/>
@@ -325529,13 +325506,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03044e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03044e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03044c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03044c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07117" sboTerm="SBO:0000185" id="MAR07117" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07117" sboTerm="SBO:0000185" id="R_MAR07117" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -325543,7 +325520,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07117">
+            <rdf:Description rdf:about="#R_MAR07117">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_7117"/>
@@ -325553,13 +325530,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01403e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01403e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01403c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01403c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07119" sboTerm="SBO:0000185" id="MAR07119" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07119" sboTerm="SBO:0000185" id="R_MAR07119" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -325567,7 +325544,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07119">
+            <rdf:Description rdf:about="#R_MAR07119">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_7119"/>
@@ -325577,13 +325554,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01174e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01174e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01174c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01174c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07121" sboTerm="SBO:0000185" id="MAR07121" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07121" sboTerm="SBO:0000185" id="R_MAR07121" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -325591,7 +325568,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07121">
+            <rdf:Description rdf:about="#R_MAR07121">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_7121"/>
@@ -325601,13 +325578,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00932e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00932e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00932c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00932c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07123" sboTerm="SBO:0000185" id="MAR07123" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07123" sboTerm="SBO:0000185" id="R_MAR07123" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -325615,7 +325592,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07123">
+            <rdf:Description rdf:about="#R_MAR07123">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_7123"/>
@@ -325625,13 +325602,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00545e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00545e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00545c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00545c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07125" sboTerm="SBO:0000185" id="MAR07125" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07125" sboTerm="SBO:0000185" id="R_MAR07125" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -325639,7 +325616,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07125">
+            <rdf:Description rdf:about="#R_MAR07125">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_7125"/>
@@ -325649,13 +325626,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00228e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00228e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00228c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00228c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07127" sboTerm="SBO:0000185" id="MAR07127" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07127" sboTerm="SBO:0000185" id="R_MAR07127" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -325663,7 +325640,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07127">
+            <rdf:Description rdf:about="#R_MAR07127">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_7127"/>
@@ -325673,13 +325650,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00242e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00242e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00242c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00242c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07173" sboTerm="SBO:0000185" id="MAR07173" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07173" sboTerm="SBO:0000185" id="R_MAR07173" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -325687,7 +325664,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07173">
+            <rdf:Description rdf:about="#R_MAR07173">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_7173"/>
@@ -325697,13 +325674,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01712c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01712c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01712e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01712e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07184" sboTerm="SBO:0000185" id="MAR07184" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07184" sboTerm="SBO:0000185" id="R_MAR07184" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -325711,7 +325688,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07184">
+            <rdf:Description rdf:about="#R_MAR07184">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/HMR_7184"/>
@@ -325722,13 +325699,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02907c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02907c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02907e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02907e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07223" sboTerm="SBO:0000185" id="MAR07223" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07223" sboTerm="SBO:0000185" id="R_MAR07223" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -325736,7 +325713,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07223">
+            <rdf:Description rdf:about="#R_MAR07223">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/HSPGt"/>
@@ -325748,13 +325725,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02054g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02054g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02054e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02054e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07253" sboTerm="SBO:0000185" id="MAR07253" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07253" sboTerm="SBO:0000185" id="R_MAR07253" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -325762,7 +325739,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07253">
+            <rdf:Description rdf:about="#R_MAR07253">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/XYLTt"/>
@@ -325774,13 +325751,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03155c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03155c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03155e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03155e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07372" sboTerm="SBO:0000185" id="MAR07372" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07372" sboTerm="SBO:0000185" id="R_MAR07372" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -325788,7 +325765,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07372">
+            <rdf:Description rdf:about="#R_MAR07372">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/KSIt"/>
@@ -325800,13 +325777,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02278g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02278g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02278e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02278e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07453" sboTerm="SBO:0000185" id="MAR07453" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07453" sboTerm="SBO:0000185" id="R_MAR07453" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -325814,7 +325791,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07453">
+            <rdf:Description rdf:about="#R_MAR07453">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/KSII_CORE2t"/>
@@ -325826,13 +325803,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02288g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02288g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02288e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02288e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07482" sboTerm="SBO:0000185" id="MAR07482" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07482" sboTerm="SBO:0000185" id="R_MAR07482" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -325840,7 +325817,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07482">
+            <rdf:Description rdf:about="#R_MAR07482">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/KSII_CORE4t"/>
@@ -325852,13 +325829,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02303g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02303g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02303e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02303e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07499" sboTerm="SBO:0000185" id="MAR07499" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07499" sboTerm="SBO:0000185" id="R_MAR07499" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -325866,7 +325843,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07499">
+            <rdf:Description rdf:about="#R_MAR07499">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CSPG_At"/>
@@ -325879,16 +325856,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01517g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01517g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01517e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01517e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Ent1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07511" sboTerm="SBO:0000185" id="MAR07511" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07511" sboTerm="SBO:0000185" id="R_MAR07511" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -325896,7 +325873,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07511">
+            <rdf:Description rdf:about="#R_MAR07511">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CSPG_Bt"/>
@@ -325908,13 +325885,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01525g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01525g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01525e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01525e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07523" sboTerm="SBO:0000185" id="MAR07523" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07523" sboTerm="SBO:0000185" id="R_MAR07523" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -325922,7 +325899,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07523">
+            <rdf:Description rdf:about="#R_MAR07523">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CSPG_Ct"/>
@@ -325934,13 +325911,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01533g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01533g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01533e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01533e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07539" sboTerm="SBO:0000185" id="MAR07539" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07539" sboTerm="SBO:0000185" id="R_MAR07539" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -325948,7 +325925,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07539">
+            <rdf:Description rdf:about="#R_MAR07539">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CSPG_Dt"/>
@@ -325960,13 +325937,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01543g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01543g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01543e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01543e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07555" sboTerm="SBO:0000185" id="MAR07555" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07555" sboTerm="SBO:0000185" id="R_MAR07555" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -325974,7 +325951,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07555">
+            <rdf:Description rdf:about="#R_MAR07555">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CSPG_Et"/>
@@ -325986,13 +325963,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01554g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01554g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01554e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01554e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07568" sboTerm="SBO:0000176" id="MAR07568" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07568" sboTerm="SBO:0000176" id="R_MAR07568" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -326000,7 +325977,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07568">
+            <rdf:Description rdf:about="#R_MAR07568">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.212"/>
@@ -326013,13 +325990,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03109c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03111c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03109c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03111c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02139e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02139e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106c" stoichiometry="2" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -326028,7 +326005,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07569" sboTerm="SBO:0000176" id="MAR07569" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07569" sboTerm="SBO:0000176" id="R_MAR07569" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -326036,7 +326013,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07569">
+            <rdf:Description rdf:about="#R_MAR07569">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.212"/>
@@ -326049,14 +326026,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02139e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03109c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03111c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02139e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03109c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03111c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02141e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02141e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106c" stoichiometry="2" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -326065,7 +326042,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07579" sboTerm="SBO:0000185" id="MAR07579" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07579" sboTerm="SBO:0000185" id="R_MAR07579" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -326073,7 +326050,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07579">
+            <rdf:Description rdf:about="#R_MAR07579">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/S2L2FN2M2MASNt"/>
@@ -326085,13 +326062,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02672g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02672g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02672e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02672e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07583" sboTerm="SBO:0000185" id="MAR07583" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07583" sboTerm="SBO:0000185" id="R_MAR07583" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -326099,7 +326076,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07583">
+            <rdf:Description rdf:about="#R_MAR07583">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/N2M2NMASNt"/>
@@ -326111,13 +326088,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02510g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02510g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02510e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02510e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07608" sboTerm="SBO:0000185" id="MAR07608" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07608" sboTerm="SBO:0000185" id="R_MAR07608" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -326125,7 +326102,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07608">
+            <rdf:Description rdf:about="#R_MAR07608">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PAFt"/>
@@ -326137,13 +326114,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00626c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00626c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00626e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00626e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07609" sboTerm="SBO:0000185" id="MAR07609" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07609" sboTerm="SBO:0000185" id="R_MAR07609" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -326151,7 +326128,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07609">
+            <rdf:Description rdf:about="#R_MAR07609">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_ak2lgchol_hs_e"/>
@@ -326161,13 +326138,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00549c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00549c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00549e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00549e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07629" sboTerm="SBO:0000185" id="MAR07629" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07629" sboTerm="SBO:0000185" id="R_MAR07629" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -326175,7 +326152,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07629">
+            <rdf:Description rdf:about="#R_MAR07629">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.6.3.8"/>
@@ -326187,15 +326164,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01413c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01413c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01413e" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01413e" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -326205,7 +326182,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07630" sboTerm="SBO:0000185" id="MAR07630" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07630" sboTerm="SBO:0000185" id="R_MAR07630" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -326213,7 +326190,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07630">
+            <rdf:Description rdf:about="#R_MAR07630">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CAt7r"/>
@@ -326226,18 +326203,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01413c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM01413c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="3" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01413e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM01413e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="3" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Calx"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07631" sboTerm="SBO:0000185" id="MAR07631" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07631" sboTerm="SBO:0000185" id="R_MAR07631" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -326245,7 +326222,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07631">
+            <rdf:Description rdf:about="#R_MAR07631">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/NCKt"/>
@@ -326258,14 +326235,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01413c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02200c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM01413c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02200c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="4" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01413e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02200e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM01413e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02200e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="4" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -326275,7 +326252,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07632" sboTerm="SBO:0000185" id="MAR07632" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07632" sboTerm="SBO:0000185" id="R_MAR07632" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -326283,7 +326260,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07632">
+            <rdf:Description rdf:about="#R_MAR07632">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/NCNt"/>
@@ -326294,20 +326271,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01413c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="4" constant="true"/>
-          <speciesReference species="MAM02578c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01413c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM02578c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01413e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="4" constant="true"/>
-          <speciesReference species="MAM02578e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01413e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM02578e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Nckx30C"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07633" sboTerm="SBO:0000185" id="MAR07633" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07633" sboTerm="SBO:0000185" id="R_MAR07633" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -326315,7 +326292,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07633">
+            <rdf:Description rdf:about="#R_MAR07633">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/HISTAVESSEC"/>
@@ -326326,21 +326303,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02124c" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02124c" stoichiometry="3" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02124e" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02124e" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="2" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Vmat"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07634" sboTerm="SBO:0000185" id="MAR07634" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07634" sboTerm="SBO:0000185" id="R_MAR07634" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -326348,7 +326325,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07634">
+            <rdf:Description rdf:about="#R_MAR07634">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/5HTRPVESSEC"/>
@@ -326359,21 +326336,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01107c" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM01371c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01107c" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01107e" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM01285c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01107e" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="2" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Vmat"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07635" sboTerm="SBO:0000185" id="MAR07635" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07635" sboTerm="SBO:0000185" id="R_MAR07635" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -326381,7 +326358,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07635">
+            <rdf:Description rdf:about="#R_MAR07635">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ADRNLPVESSEC"/>
@@ -326392,21 +326369,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01290c" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM01371c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01290c" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM01290e" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01290e" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="2" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Vmat"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07636" sboTerm="SBO:0000185" id="MAR07636" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07636" sboTerm="SBO:0000185" id="R_MAR07636" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -326414,7 +326391,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07636">
+            <rdf:Description rdf:about="#R_MAR07636">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/DOPAVESSEC"/>
@@ -326425,21 +326402,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM01736c" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01736c" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM01736e" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01736e" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="2" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Vmat"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07637" sboTerm="SBO:0000185" id="MAR07637" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07637" sboTerm="SBO:0000185" id="R_MAR07637" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -326447,7 +326424,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07637">
+            <rdf:Description rdf:about="#R_MAR07637">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/NRPPHRVESSEC"/>
@@ -326458,21 +326435,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02617c" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02617c" stoichiometry="3" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02617e" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02617e" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="2" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Vmat"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07639" sboTerm="SBO:0000185" id="MAR07639" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07639" sboTerm="SBO:0000185" id="R_MAR07639" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -326480,7 +326457,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07639">
+            <rdf:Description rdf:about="#R_MAR07639">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ASPDt6"/>
@@ -326493,16 +326470,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01641e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02200c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM01641e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02200c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="3" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01641c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02200e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM01641c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02200e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="3" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -326511,7 +326488,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07643" sboTerm="SBO:0000185" id="MAR07643" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07643" sboTerm="SBO:0000185" id="R_MAR07643" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -326519,7 +326496,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07643">
+            <rdf:Description rdf:about="#R_MAR07643">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ALADGLNexR"/>
@@ -326531,12 +326508,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01638c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01975e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01638c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01975e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01638e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01975c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01638e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01975c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:and>
@@ -326545,7 +326522,7 @@
           </fbc:and>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07644" sboTerm="SBO:0000185" id="MAR07644" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07644" sboTerm="SBO:0000185" id="R_MAR07644" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -326553,7 +326530,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07644">
+            <rdf:Description rdf:about="#R_MAR07644">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ALADGLYexR"/>
@@ -326565,12 +326542,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01638c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01986e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01638c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01638e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01986c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01638e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:and>
@@ -326579,7 +326556,7 @@
           </fbc:and>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07645" sboTerm="SBO:0000185" id="MAR07645" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07645" sboTerm="SBO:0000185" id="R_MAR07645" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -326587,7 +326564,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07645">
+            <rdf:Description rdf:about="#R_MAR07645">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/DALAt2r"/>
@@ -326601,18 +326578,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01638e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01638e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01638c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01638c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG13384"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07650" sboTerm="SBO:0000185" id="MAR07650" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07650" sboTerm="SBO:0000185" id="R_MAR07650" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -326620,7 +326597,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07650">
+            <rdf:Description rdf:about="#R_MAR07650">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ESTRADIOLGLCt2"/>
@@ -326633,15 +326610,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01786c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01786c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01786e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01786e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -326650,7 +326627,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07651" sboTerm="SBO:0000185" id="MAR07651" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07651" sboTerm="SBO:0000185" id="R_MAR07651" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -326658,7 +326635,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07651">
+            <rdf:Description rdf:about="#R_MAR07651">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ESTRADIOLGLCt"/>
@@ -326670,12 +326647,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01786e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01786e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01786c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01786c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -326688,7 +326665,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07660" sboTerm="SBO:0000185" id="MAR07660" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07660" sboTerm="SBO:0000185" id="R_MAR07660" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -326696,7 +326673,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07660">
+            <rdf:Description rdf:about="#R_MAR07660">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_7660"/>
@@ -326706,13 +326683,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01356c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01356c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01356e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01356e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07666" sboTerm="SBO:0000185" id="MAR07666" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07666" sboTerm="SBO:0000185" id="R_MAR07666" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -326720,7 +326697,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07666">
+            <rdf:Description rdf:about="#R_MAR07666">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/BTNt2i"/>
@@ -326733,18 +326710,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01401e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01401e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01401c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01401c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="hrm"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07667" sboTerm="SBO:0000185" id="MAR07667" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07667" sboTerm="SBO:0000185" id="R_MAR07667" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -326752,7 +326729,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07667">
+            <rdf:Description rdf:about="#R_MAR07667">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/BTNt3i"/>
@@ -326764,17 +326741,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01401e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01401e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="2" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01401c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01401c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -326783,7 +326760,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07679" sboTerm="SBO:0000185" id="MAR07679" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07679" sboTerm="SBO:0000185" id="R_MAR07679" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -326791,7 +326768,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07679">
+            <rdf:Description rdf:about="#R_MAR07679">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/1MNCAMti"/>
@@ -326803,18 +326780,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00536c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00536c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00536e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00536e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07680" sboTerm="SBO:0000185" id="MAR07680" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07680" sboTerm="SBO:0000185" id="R_MAR07680" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -326822,7 +326799,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07680">
+            <rdf:Description rdf:about="#R_MAR07680">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CGLYt3_2"/>
@@ -326833,12 +326810,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01626e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039e" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01626e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="2" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01626c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01626c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="2" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -326847,7 +326824,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07681" sboTerm="SBO:0000185" id="MAR07681" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07681" sboTerm="SBO:0000185" id="R_MAR07681" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -326855,7 +326832,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07681">
+            <rdf:Description rdf:about="#R_MAR07681">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ACHVESSEC"/>
@@ -326866,21 +326843,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01260c" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM01371c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01260c" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01260e" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM01285c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01260e" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="2" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="VAChT"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07682" sboTerm="SBO:0000185" id="MAR07682" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07682" sboTerm="SBO:0000185" id="R_MAR07682" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -326889,7 +326866,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07682">
+            <rdf:Description rdf:about="#R_MAR07682">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/5FTHFt2"/>
@@ -326900,12 +326877,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01100c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02147e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01100c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02147e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01100e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02147c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01100e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02147c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -326914,7 +326891,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07683" sboTerm="SBO:0000185" id="MAR07683" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07683" sboTerm="SBO:0000185" id="R_MAR07683" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -326923,7 +326900,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07683">
+            <rdf:Description rdf:about="#R_MAR07683">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/5MTHFt2"/>
@@ -326935,12 +326912,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01115c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02147e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01115c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02147e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01115e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02147c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01115e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02147c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -326949,7 +326926,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07684" sboTerm="SBO:0000185" id="MAR07684" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07684" sboTerm="SBO:0000185" id="R_MAR07684" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -326958,7 +326935,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07684">
+            <rdf:Description rdf:about="#R_MAR07684">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FOLt2"/>
@@ -326970,12 +326947,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01830c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02147e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01830c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02147e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01830e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02147c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01830e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02147c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -326984,7 +326961,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07685" sboTerm="SBO:0000185" id="MAR07685" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07685" sboTerm="SBO:0000185" id="R_MAR07685" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -326993,7 +326970,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07685">
+            <rdf:Description rdf:about="#R_MAR07685">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/THFt2"/>
@@ -327004,12 +326981,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02147e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02980c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02147e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02980c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02147c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02980e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02147c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02980e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -327018,7 +326995,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07686" sboTerm="SBO:0000185" id="MAR07686" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07686" sboTerm="SBO:0000185" id="R_MAR07686" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -327027,7 +327004,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07686">
+            <rdf:Description rdf:about="#R_MAR07686">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/THMMPt4"/>
@@ -327038,12 +327015,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02147c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02983e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02147c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02983e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02147e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02983c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02147e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02983c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -327052,7 +327029,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07687" sboTerm="SBO:0000185" id="MAR07687" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07687" sboTerm="SBO:0000185" id="R_MAR07687" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -327061,7 +327038,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07687">
+            <rdf:Description rdf:about="#R_MAR07687">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/THMTPt"/>
@@ -327072,12 +327049,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02147e" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM02985c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02147e" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM02985c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02147c" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM02985e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02147c" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM02985e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -327086,7 +327063,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07690" sboTerm="SBO:0000185" id="MAR07690" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07690" sboTerm="SBO:0000185" id="R_MAR07690" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -327094,7 +327071,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07690">
+            <rdf:Description rdf:about="#R_MAR07690">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/4NPHte"/>
@@ -327106,13 +327083,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02754c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02754c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02754e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02754e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07691" sboTerm="SBO:0000185" id="MAR07691" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07691" sboTerm="SBO:0000185" id="R_MAR07691" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 2</p>
@@ -327120,7 +327097,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07691">
+            <rdf:Description rdf:about="#R_MAR07691">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CAMPt"/>
@@ -327132,15 +327109,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01419c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01419c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01419e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01419e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -327149,7 +327126,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07692" sboTerm="SBO:0000185" id="MAR07692" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07692" sboTerm="SBO:0000185" id="R_MAR07692" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 2</p>
@@ -327157,7 +327134,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07692">
+            <rdf:Description rdf:about="#R_MAR07692">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CGMPt"/>
@@ -327169,15 +327146,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01433c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01433c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01433e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01433e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -327186,7 +327163,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07699" sboTerm="SBO:0000185" id="MAR07699" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07699" sboTerm="SBO:0000185" id="R_MAR07699" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -327194,7 +327171,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07699">
+            <rdf:Description rdf:about="#R_MAR07699">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/SO4t4_2"/>
@@ -327206,15 +327183,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02519e" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02946e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02946e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02519c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02946c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02946c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07700" sboTerm="SBO:0000185" id="MAR07700" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07700" sboTerm="SBO:0000185" id="R_MAR07700" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -327222,7 +327199,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07700">
+            <rdf:Description rdf:about="#R_MAR07700">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/SO4t4_3"/>
@@ -327234,15 +327211,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02519e" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM02946e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM02946e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02519c" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM02946c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM02946c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07734" sboTerm="SBO:0000185" id="MAR07734" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07734" sboTerm="SBO:0000185" id="R_MAR07734" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -327250,7 +327227,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07734">
+            <rdf:Description rdf:about="#R_MAR07734">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CHOLt4"/>
@@ -327262,18 +327239,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01513e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01513e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01513c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01513c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="ChT"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07735" sboTerm="SBO:0000185" id="MAR07735" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07735" sboTerm="SBO:0000185" id="R_MAR07735" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -327282,7 +327259,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07735">
+            <rdf:Description rdf:about="#R_MAR07735">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PHEMEt"/>
@@ -327295,16 +327272,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02049c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02049c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02049e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02049e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG30345"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07736" sboTerm="SBO:0000185" id="MAR07736" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07736" sboTerm="SBO:0000185" id="R_MAR07736" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -327312,7 +327289,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07736">
+            <rdf:Description rdf:about="#R_MAR07736">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/BALAVECSEC"/>
@@ -327323,21 +327300,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01383c" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01383c" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01383e" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01383e" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="VGAT"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07737" sboTerm="SBO:0000185" id="MAR07737" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07737" sboTerm="SBO:0000185" id="R_MAR07737" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -327345,7 +327322,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07737">
+            <rdf:Description rdf:about="#R_MAR07737">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GLYVESSEC"/>
@@ -327356,21 +327333,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01986c" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986c" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01986e" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986e" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="VGAT"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07738" sboTerm="SBO:0000185" id="MAR07738" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07738" sboTerm="SBO:0000185" id="R_MAR07738" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -327378,7 +327355,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07738">
+            <rdf:Description rdf:about="#R_MAR07738">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GABAVESSEC"/>
@@ -327389,21 +327366,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00970c" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00970c" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00970e" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00970e" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="VGAT"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07739" sboTerm="SBO:0000185" id="MAR07739" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07739" sboTerm="SBO:0000185" id="R_MAR07739" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -327411,7 +327388,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07739">
+            <rdf:Description rdf:about="#R_MAR07739">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/It"/>
@@ -327423,16 +327400,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02174c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02174c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02174e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02174e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG10444"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07774" sboTerm="SBO:0000185" id="MAR07774" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07774" sboTerm="SBO:0000185" id="R_MAR07774" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -327440,7 +327417,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07774">
+            <rdf:Description rdf:about="#R_MAR07774">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_nad_e"/>
@@ -327450,13 +327427,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02552c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02552e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07781" sboTerm="SBO:0000185" id="MAR07781" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07781" sboTerm="SBO:0000185" id="R_MAR07781" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -327464,7 +327441,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07781">
+            <rdf:Description rdf:about="#R_MAR07781">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_adp_e"/>
@@ -327475,13 +327452,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07787" sboTerm="SBO:0000185" id="MAR07787" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07787" sboTerm="SBO:0000185" id="R_MAR07787" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -327489,7 +327466,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07787">
+            <rdf:Description rdf:about="#R_MAR07787">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_ctp_e"/>
@@ -327499,13 +327476,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01623c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01623c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01623e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01623e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07798" sboTerm="SBO:0000185" id="MAR07798" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07798" sboTerm="SBO:0000185" id="R_MAR07798" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -327513,7 +327490,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07798">
+            <rdf:Description rdf:about="#R_MAR07798">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/COt"/>
@@ -327525,13 +327502,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01595c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01595c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01595e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01595e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07896" sboTerm="SBO:0000185" id="MAR07896" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07896" sboTerm="SBO:0000185" id="R_MAR07896" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -327539,7 +327516,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07896">
+            <rdf:Description rdf:about="#R_MAR07896">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/ETHAtr"/>
@@ -327552,13 +327529,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01797c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01797c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01797e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01797e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07898" sboTerm="SBO:0000185" id="MAR07898" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07898" sboTerm="SBO:0000185" id="R_MAR07898" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -327566,7 +327543,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07898">
+            <rdf:Description rdf:about="#R_MAR07898">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_7898"/>
@@ -327576,13 +327553,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02193c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02193c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02193e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02193e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07900" sboTerm="SBO:0000185" id="MAR07900" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07900" sboTerm="SBO:0000185" id="R_MAR07900" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -327590,7 +327567,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07900">
+            <rdf:Description rdf:about="#R_MAR07900">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_7900"/>
@@ -327600,13 +327577,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01714c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01714c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01714e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01714e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07901" sboTerm="SBO:0000185" id="MAR07901" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07901" sboTerm="SBO:0000185" id="R_MAR07901" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -327615,7 +327592,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07901">
+            <rdf:Description rdf:about="#R_MAR07901">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_7901"/>
@@ -327625,13 +327602,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02050c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02050c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02050e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02050e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07902" sboTerm="SBO:0000185" id="MAR07902" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07902" sboTerm="SBO:0000185" id="R_MAR07902" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -327639,7 +327616,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07902">
+            <rdf:Description rdf:about="#R_MAR07902">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/OXAHCOtex"/>
@@ -327651,18 +327628,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02046c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02661e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02661e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02046e" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02661c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02661c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Prestin"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07903" sboTerm="SBO:0000185" id="MAR07903" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07903" sboTerm="SBO:0000185" id="R_MAR07903" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -327670,7 +327647,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07903">
+            <rdf:Description rdf:about="#R_MAR07903">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_7903"/>
@@ -327682,13 +327659,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02440c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02440c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02440e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02440e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07904" sboTerm="SBO:0000185" id="MAR07904" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07904" sboTerm="SBO:0000185" id="R_MAR07904" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -327696,7 +327673,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07904">
+            <rdf:Description rdf:about="#R_MAR07904">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/SELt4_3"/>
@@ -327707,15 +327684,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02885e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02885e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02885c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02885c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07906" sboTerm="SBO:0000185" id="MAR07906" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07906" sboTerm="SBO:0000185" id="R_MAR07906" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -327723,7 +327700,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07906">
+            <rdf:Description rdf:about="#R_MAR07906">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_7906"/>
@@ -327733,13 +327710,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01704c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01704c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01704e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01704e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07946" sboTerm="SBO:0000185" id="MAR07946" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07946" sboTerm="SBO:0000185" id="R_MAR07946" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -327747,7 +327724,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07946">
+            <rdf:Description rdf:about="#R_MAR07946">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ESTSULT"/>
@@ -327760,12 +327737,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01789e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01789e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="2" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01789c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01789c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="2" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -327774,7 +327751,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07951" sboTerm="SBO:0000185" id="MAR07951" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07951" sboTerm="SBO:0000185" id="R_MAR07951" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -327782,7 +327759,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07951">
+            <rdf:Description rdf:about="#R_MAR07951">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/DHFR"/>
@@ -327794,13 +327771,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01659c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01659c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01659r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01659r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07961" sboTerm="SBO:0000185" id="MAR07961" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07961" sboTerm="SBO:0000185" id="R_MAR07961" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -327808,7 +327785,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07961">
+            <rdf:Description rdf:about="#R_MAR07961">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/6HTSTSTERONEte"/>
@@ -327820,13 +327797,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01158c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01158c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01158e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01158e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07964" sboTerm="SBO:0000185" id="MAR07964" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07964" sboTerm="SBO:0000185" id="R_MAR07964" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -327834,7 +327811,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07964">
+            <rdf:Description rdf:about="#R_MAR07964">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ESTRONESt"/>
@@ -327846,21 +327823,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01795c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01795c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01795e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01795e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="MRP"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07967" sboTerm="SBO:0000185" id="MAR07967" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07967" sboTerm="SBO:0000185" id="R_MAR07967" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -327868,7 +327845,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07967">
+            <rdf:Description rdf:about="#R_MAR07967">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ANDRSTRNGLCte"/>
@@ -327881,21 +327858,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01339c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01339c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01339e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01339e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="MRP"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07975" sboTerm="SBO:0000185" id="MAR07975" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07975" sboTerm="SBO:0000185" id="R_MAR07975" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -327903,7 +327880,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07975">
+            <rdf:Description rdf:about="#R_MAR07975">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/5ADTSTSTERONESte"/>
@@ -327915,13 +327892,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01071c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01071c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01071e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01071e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07977" sboTerm="SBO:0000185" id="MAR07977" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07977" sboTerm="SBO:0000185" id="R_MAR07977" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -327929,7 +327906,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07977">
+            <rdf:Description rdf:about="#R_MAR07977">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/APRGSTRNte"/>
@@ -327941,13 +327918,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00580c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00580c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00580e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00580e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07979" sboTerm="SBO:0000185" id="MAR07979" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07979" sboTerm="SBO:0000185" id="R_MAR07979" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -327955,7 +327932,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07979">
+            <rdf:Description rdf:about="#R_MAR07979">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/TSTSTERONESte"/>
@@ -327967,13 +327944,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02968c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02968c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02968e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02968e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07982" sboTerm="SBO:0000185" id="MAR07982" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07982" sboTerm="SBO:0000185" id="R_MAR07982" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -327981,7 +327958,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07982">
+            <rdf:Description rdf:about="#R_MAR07982">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/AHANDROSTANGLCte"/>
@@ -327994,21 +327971,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01799c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01799c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01799e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01799e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="MRP"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07986" sboTerm="SBO:0000185" id="MAR07986" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07986" sboTerm="SBO:0000185" id="R_MAR07986" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -328016,7 +327993,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07986">
+            <rdf:Description rdf:about="#R_MAR07986">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ESTRIOLtr"/>
@@ -328029,21 +328006,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00402c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00402c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00402e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00402e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="MRP"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07990" sboTerm="SBO:0000185" id="MAR07990" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07990" sboTerm="SBO:0000185" id="R_MAR07990" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -328051,7 +328028,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07990">
+            <rdf:Description rdf:about="#R_MAR07990">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/5ADTSTSTERONEGLCte"/>
@@ -328064,21 +328041,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01070c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01070c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01070e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01070e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="MRP"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07994" sboTerm="SBO:0000185" id="MAR07994" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07994" sboTerm="SBO:0000185" id="R_MAR07994" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -328086,7 +328063,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07994">
+            <rdf:Description rdf:about="#R_MAR07994">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/VITD2t"/>
@@ -328098,13 +328075,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03141c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03141c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03141e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03141e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07997" sboTerm="SBO:0000185" id="MAR07997" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07997" sboTerm="SBO:0000185" id="R_MAR07997" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -328112,7 +328089,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07997">
+            <rdf:Description rdf:about="#R_MAR07997">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/25HVITD2t"/>
@@ -328125,13 +328102,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00620c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00620c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00620e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00620e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08002" sboTerm="SBO:0000185" id="MAR08002" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08002" sboTerm="SBO:0000185" id="R_MAR08002" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -328139,7 +328116,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08002">
+            <rdf:Description rdf:about="#R_MAR08002">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/24_25DHVITD2t"/>
@@ -328150,13 +328127,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00613c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00613c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00613e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00613e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08007" sboTerm="SBO:0000185" id="MAR08007" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08007" sboTerm="SBO:0000185" id="R_MAR08007" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -328164,7 +328141,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08007">
+            <rdf:Description rdf:about="#R_MAR08007">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/24_25DHVITD3t"/>
@@ -328175,13 +328152,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00035c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00035c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00035e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00035e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08010" sboTerm="SBO:0000185" id="MAR08010" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08010" sboTerm="SBO:0000185" id="R_MAR08010" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -328189,7 +328166,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08010">
+            <rdf:Description rdf:about="#R_MAR08010">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/25HVITD3t"/>
@@ -328202,13 +328179,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01415c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01415c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01415e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01415e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08015" sboTerm="SBO:0000185" id="MAR08015" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08015" sboTerm="SBO:0000185" id="R_MAR08015" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -328216,7 +328193,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08015">
+            <rdf:Description rdf:about="#R_MAR08015">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/VITD3t"/>
@@ -328229,13 +328206,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03142c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03142c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03142e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03142e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08023" sboTerm="SBO:0000185" id="MAR08023" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08023" sboTerm="SBO:0000185" id="R_MAR08023" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -328243,7 +328220,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08023">
+            <rdf:Description rdf:about="#R_MAR08023">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_8023"/>
@@ -328253,13 +328230,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00204c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00204c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00204e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00204e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08031" sboTerm="SBO:0000185" id="MAR08031" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08031" sboTerm="SBO:0000185" id="R_MAR08031" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -328267,7 +328244,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08031">
+            <rdf:Description rdf:about="#R_MAR08031">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/DECDPtm"/>
@@ -328279,16 +328256,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01647c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01647c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01647e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01647e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG6126"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08033" sboTerm="SBO:0000185" id="MAR08033" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08033" sboTerm="SBO:0000185" id="R_MAR08033" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -328296,7 +328273,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08033">
+            <rdf:Description rdf:about="#R_MAR08033">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/4HDEBRISOQUINEte"/>
@@ -328308,13 +328285,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00998c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00998c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00998e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00998e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08035" sboTerm="SBO:0000185" id="MAR08035" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08035" sboTerm="SBO:0000185" id="R_MAR08035" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -328322,7 +328299,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08035">
+            <rdf:Description rdf:about="#R_MAR08035">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/24NPHte"/>
@@ -328334,13 +328311,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01019c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01019c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01019e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01019e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08039" sboTerm="SBO:0000185" id="MAR08039" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08039" sboTerm="SBO:0000185" id="R_MAR08039" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -328348,7 +328325,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08039">
+            <rdf:Description rdf:about="#R_MAR08039">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CPCTDTX"/>
@@ -328360,13 +328337,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01617c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01617c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01617e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01617e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08041" sboTerm="SBO:0000185" id="MAR08041" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08041" sboTerm="SBO:0000185" id="R_MAR08041" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -328374,7 +328351,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08041">
+            <rdf:Description rdf:about="#R_MAR08041">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/HCOUMARINte"/>
@@ -328386,13 +328363,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03113c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03113c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03113e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03113e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08042" sboTerm="SBO:0000185" id="MAR08042" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08042" sboTerm="SBO:0000185" id="R_MAR08042" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -328400,7 +328377,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08042">
+            <rdf:Description rdf:about="#R_MAR08042">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ANTIPYRENEte"/>
@@ -328412,13 +328389,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01344c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01344c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01344e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01344e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08044" sboTerm="SBO:0000185" id="MAR08044" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08044" sboTerm="SBO:0000185" id="R_MAR08044" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -328426,7 +328403,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08044">
+            <rdf:Description rdf:about="#R_MAR08044">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/DMGDHm"/>
@@ -328438,13 +328415,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01768c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01768c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01768e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01768e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08045" sboTerm="SBO:0000185" id="MAR08045" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08045" sboTerm="SBO:0000185" id="R_MAR08045" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -328452,7 +328429,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08045">
+            <rdf:Description rdf:about="#R_MAR08045">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/OMEPRAZOLEte"/>
@@ -328464,13 +328441,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02653c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02653c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02653e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02653e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08047" sboTerm="SBO:0000185" id="MAR08047" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08047" sboTerm="SBO:0000185" id="R_MAR08047" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -328478,7 +328455,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08047">
+            <rdf:Description rdf:about="#R_MAR08047">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/5HOMEPRAZOLEte"/>
@@ -328490,13 +328467,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01109c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01109c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01109e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01109e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08048" sboTerm="SBO:0000185" id="MAR08048" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08048" sboTerm="SBO:0000185" id="R_MAR08048" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -328504,7 +328481,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08048">
+            <rdf:Description rdf:about="#R_MAR08048">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/TAXOLte"/>
@@ -328516,13 +328493,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02673c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02673c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02673e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02673e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08050" sboTerm="SBO:0000185" id="MAR08050" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08050" sboTerm="SBO:0000185" id="R_MAR08050" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -328530,7 +328507,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08050">
+            <rdf:Description rdf:about="#R_MAR08050">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/HTAXOLte"/>
@@ -328542,13 +328519,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01163c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01163c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01163e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01163e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08051" sboTerm="SBO:0000185" id="MAR08051" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08051" sboTerm="SBO:0000185" id="R_MAR08051" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -328556,7 +328533,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08051">
+            <rdf:Description rdf:about="#R_MAR08051">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/TOLBUTAMIDEte"/>
@@ -328568,13 +328545,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03001c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03001c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03001e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03001e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08053" sboTerm="SBO:0000185" id="MAR08053" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08053" sboTerm="SBO:0000185" id="R_MAR08053" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -328582,7 +328559,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08053">
+            <rdf:Description rdf:about="#R_MAR08053">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/4MTOLBUTAMIDEte"/>
@@ -328594,13 +328571,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01007c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01007c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01007e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01007e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08054" sboTerm="SBO:0000185" id="MAR08054" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08054" sboTerm="SBO:0000185" id="R_MAR08054" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -328608,7 +328585,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08054">
+            <rdf:Description rdf:about="#R_MAR08054">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/NIFEDIPINEte"/>
@@ -328622,13 +328599,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02587c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02587c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02587e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02587e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08056" sboTerm="SBO:0000185" id="MAR08056" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08056" sboTerm="SBO:0000185" id="R_MAR08056" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -328636,7 +328613,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08056">
+            <rdf:Description rdf:about="#R_MAR08056">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_8056"/>
@@ -328646,13 +328623,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02153c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02153c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02153e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02153e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08057" sboTerm="SBO:0000185" id="MAR08057" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08057" sboTerm="SBO:0000185" id="R_MAR08057" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -328660,7 +328637,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08057">
+            <rdf:Description rdf:about="#R_MAR08057">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EBP1r"/>
@@ -328672,13 +328649,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01765c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01765c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01765e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01765e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08061" sboTerm="SBO:0000185" id="MAR08061" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08061" sboTerm="SBO:0000185" id="R_MAR08061" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -328686,7 +328663,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08061">
+            <rdf:Description rdf:about="#R_MAR08061">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EBASTINEte"/>
@@ -328698,13 +328675,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02150c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02150c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02150e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02150e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08073" sboTerm="SBO:0000185" id="MAR08073" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08073" sboTerm="SBO:0000185" id="R_MAR08073" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -328712,7 +328689,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08073">
+            <rdf:Description rdf:about="#R_MAR08073">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/DSAT"/>
@@ -328724,13 +328701,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01672c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01672c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01672e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01672e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08075" sboTerm="SBO:0000185" id="MAR08075" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08075" sboTerm="SBO:0000185" id="R_MAR08075" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -328738,7 +328715,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08075">
+            <rdf:Description rdf:about="#R_MAR08075">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/2HBt2"/>
@@ -328750,18 +328727,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00648e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00648e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00648c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00648c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="hrm"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08076" sboTerm="SBO:0000185" id="MAR08076" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08076" sboTerm="SBO:0000185" id="R_MAR08076" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -328769,7 +328746,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08076">
+            <rdf:Description rdf:about="#R_MAR08076">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/2HCO3_NAt"/>
@@ -328781,18 +328758,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02046c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02046e" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Ndae1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08077" sboTerm="SBO:0000185" id="MAR08077" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08077" sboTerm="SBO:0000185" id="R_MAR08077" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -328800,7 +328777,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08077">
+            <rdf:Description rdf:about="#R_MAR08077">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/3HCO3_NAt"/>
@@ -328812,18 +328789,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02046c" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02046e" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Ndae1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08079" sboTerm="SBO:0000185" id="MAR08079" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08079" sboTerm="SBO:0000185" id="R_MAR08079" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -328831,7 +328808,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08079">
+            <rdf:Description rdf:about="#R_MAR08079">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/2MCITt"/>
@@ -328843,13 +328820,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00665c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00665c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00665e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00665e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08080" sboTerm="SBO:0000185" id="MAR08080" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08080" sboTerm="SBO:0000185" id="R_MAR08080" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -328857,7 +328834,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08080">
+            <rdf:Description rdf:about="#R_MAR08080">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/34DHOXPEGt"/>
@@ -328869,13 +328846,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00730c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00730c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00730e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00730e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08081" sboTerm="SBO:0000185" id="MAR08081" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08081" sboTerm="SBO:0000185" id="R_MAR08081" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -328883,7 +328860,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08081">
+            <rdf:Description rdf:about="#R_MAR08081">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/34DHPHEt"/>
@@ -328895,16 +328872,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02354c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02354c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02354e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02354e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="kar"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08090" sboTerm="SBO:0000185" id="MAR08090" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08090" sboTerm="SBO:0000185" id="R_MAR08090" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -328912,7 +328889,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08090">
+            <rdf:Description rdf:about="#R_MAR08090">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/3AIBt"/>
@@ -328924,13 +328901,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02325c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02325c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02325e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02325e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08095" sboTerm="SBO:0000185" id="MAR08095" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08095" sboTerm="SBO:0000185" id="R_MAR08095" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -328938,7 +328915,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08095">
+            <rdf:Description rdf:about="#R_MAR08095">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/NRPPHRSFt"/>
@@ -328950,13 +328927,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02620c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02620c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02620e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02620e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08100" sboTerm="SBO:0000185" id="MAR08100" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08100" sboTerm="SBO:0000185" id="R_MAR08100" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -328964,7 +328941,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08100">
+            <rdf:Description rdf:about="#R_MAR08100">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/4MPTNLte"/>
@@ -328976,13 +328953,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02182c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02182c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02182e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02182e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08101" sboTerm="SBO:0000185" id="MAR08101" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08101" sboTerm="SBO:0000185" id="R_MAR08101" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -328990,7 +328967,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08101">
+            <rdf:Description rdf:about="#R_MAR08101">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/4NPHSFte"/>
@@ -329002,13 +328979,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01021c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01021c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01021e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01021e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08103" sboTerm="SBO:0000185" id="MAR08103" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08103" sboTerm="SBO:0000185" id="R_MAR08103" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -329016,7 +328993,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08103">
+            <rdf:Description rdf:about="#R_MAR08103">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/4PYRDX"/>
@@ -329028,18 +329005,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01033c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01033c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01033e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01033e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08104" sboTerm="SBO:0000185" id="MAR08104" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08104" sboTerm="SBO:0000185" id="R_MAR08104" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -329047,7 +329024,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08104">
+            <rdf:Description rdf:about="#R_MAR08104">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/5ADTSTSTERONEte"/>
@@ -329059,13 +329036,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01069c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01069c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01069e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01069e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08154" sboTerm="SBO:0000185" id="MAR08154" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08154" sboTerm="SBO:0000185" id="R_MAR08154" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -329073,7 +329050,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08154">
+            <rdf:Description rdf:about="#R_MAR08154">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GALASE10ly"/>
@@ -329085,13 +329062,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01919c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01919c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01919e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01919e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08158" sboTerm="SBO:0000185" id="MAR08158" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08158" sboTerm="SBO:0000185" id="R_MAR08158" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -329099,7 +329076,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08158">
+            <rdf:Description rdf:about="#R_MAR08158">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ACN13ACNGALGBSIDEte"/>
@@ -329111,13 +329088,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02902c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02902c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02902e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02902e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08161" sboTerm="SBO:0000185" id="MAR08161" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08161" sboTerm="SBO:0000185" id="R_MAR08161" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -329125,7 +329102,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08161">
+            <rdf:Description rdf:about="#R_MAR08161">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ACN23ACNGALGBSIDEte"/>
@@ -329137,13 +329114,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02903c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02903c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02903e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02903e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08164" sboTerm="SBO:0000185" id="MAR08164" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08164" sboTerm="SBO:0000185" id="R_MAR08164" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -329151,7 +329128,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08164">
+            <rdf:Description rdf:about="#R_MAR08164">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ACNACNGALGBSIDEte"/>
@@ -329163,13 +329140,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01711c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01711c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01711e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01711e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08214" sboTerm="SBO:0000185" id="MAR08214" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08214" sboTerm="SBO:0000185" id="R_MAR08214" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -329177,7 +329154,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08214">
+            <rdf:Description rdf:about="#R_MAR08214">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/DIGALSIDEtl"/>
@@ -329190,13 +329167,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01695c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01695c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01695e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01695e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08223" sboTerm="SBO:0000185" id="MAR08223" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08223" sboTerm="SBO:0000185" id="R_MAR08223" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -329204,7 +329181,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08223">
+            <rdf:Description rdf:about="#R_MAR08223">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FUCtly"/>
@@ -329216,13 +329193,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01861c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01861c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01861e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01861e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08225" sboTerm="SBO:0000185" id="MAR08225" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08225" sboTerm="SBO:0000185" id="R_MAR08225" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -329230,7 +329207,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08225">
+            <rdf:Description rdf:about="#R_MAR08225">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ACCOAgt"/>
@@ -329242,16 +329219,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01261c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261g" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG9706"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08229" sboTerm="SBO:0000185" id="MAR08229" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08229" sboTerm="SBO:0000185" id="R_MAR08229" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -329259,7 +329236,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08229">
+            <rdf:Description rdf:about="#R_MAR08229">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/OAGD3te"/>
@@ -329271,13 +329248,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01244c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01244c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01244e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01244e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08231" sboTerm="SBO:0000185" id="MAR08231" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08231" sboTerm="SBO:0000185" id="R_MAR08231" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -329285,7 +329262,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08231">
+            <rdf:Description rdf:about="#R_MAR08231">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/OAGT3te"/>
@@ -329297,13 +329274,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01245c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01245c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01245e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01245e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08240" sboTerm="SBO:0000185" id="MAR08240" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08240" sboTerm="SBO:0000185" id="R_MAR08240" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -329311,7 +329288,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08240">
+            <rdf:Description rdf:about="#R_MAR08240">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/SPH1Pte"/>
@@ -329323,13 +329300,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02928c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02928c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02928e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02928e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08247" sboTerm="SBO:0000185" id="MAR08247" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08247" sboTerm="SBO:0000185" id="R_MAR08247" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -329337,7 +329314,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08247">
+            <rdf:Description rdf:about="#R_MAR08247">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/SPC_HSt"/>
@@ -329349,13 +329326,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02931c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02931c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02931e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02931e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08253" sboTerm="SBO:0000185" id="MAR08253" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08253" sboTerm="SBO:0000185" id="R_MAR08253" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -329363,7 +329340,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08253">
+            <rdf:Description rdf:about="#R_MAR08253">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GALGLUSIDEtg"/>
@@ -329375,13 +329352,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01917c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01917c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01917e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01917e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08266" sboTerm="SBO:0000185" id="MAR08266" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08266" sboTerm="SBO:0000185" id="R_MAR08266" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -329389,7 +329366,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08266">
+            <rdf:Description rdf:about="#R_MAR08266">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FUCASE2e"/>
@@ -329401,13 +329378,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01850c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01850c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01850e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01850e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08270" sboTerm="SBO:0000185" id="MAR08270" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08270" sboTerm="SBO:0000185" id="R_MAR08270" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -329415,7 +329392,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08270">
+            <rdf:Description rdf:about="#R_MAR08270">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FUCGALGBSIDEte"/>
@@ -329427,13 +329404,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01859c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01859c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01859e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01859e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08273" sboTerm="SBO:0000185" id="MAR08273" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08273" sboTerm="SBO:0000185" id="R_MAR08273" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -329441,7 +329418,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08273">
+            <rdf:Description rdf:about="#R_MAR08273">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FUCACGALFUCGALACGLCGALGLUSIDEte"/>
@@ -329453,13 +329430,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01999c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01999c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01999e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01999e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08283" sboTerm="SBO:0000185" id="MAR08283" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08283" sboTerm="SBO:0000185" id="R_MAR08283" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -329467,7 +329444,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08283">
+            <rdf:Description rdf:about="#R_MAR08283">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GALFUCGALACGLCGAL14ACGLCGALGLUSIDEte"/>
@@ -329479,13 +329456,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01914c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01914c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01914e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01914e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08290" sboTerm="SBO:0000185" id="MAR08290" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08290" sboTerm="SBO:0000185" id="R_MAR08290" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -329493,7 +329470,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08290">
+            <rdf:Description rdf:about="#R_MAR08290">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ACGALFUCGALACGALFUC12GAL14ACGLCGALGLUSIDEte"/>
@@ -329505,13 +329482,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03096c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03096c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03096e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03096e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08297" sboTerm="SBO:0000185" id="MAR08297" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08297" sboTerm="SBO:0000185" id="R_MAR08297" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -329519,7 +329496,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08297">
+            <rdf:Description rdf:about="#R_MAR08297">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ACGALFUCGALACGALFUCGALACGLCGAL14ACGLCGALGLUSIDEte"/>
@@ -329531,13 +329508,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03098c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03098c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03098e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03098e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08300" sboTerm="SBO:0000185" id="MAR08300" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08300" sboTerm="SBO:0000185" id="R_MAR08300" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -329545,7 +329522,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08300">
+            <rdf:Description rdf:about="#R_MAR08300">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GALGALFUCFUCGALACGLCGALACGLCGAL14ACGLCGALGLUSIDEte"/>
@@ -329556,13 +329533,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01915c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01915c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01915e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01915e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08304" sboTerm="SBO:0000185" id="MAR08304" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08304" sboTerm="SBO:0000185" id="R_MAR08304" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -329570,7 +329547,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08304">
+            <rdf:Description rdf:about="#R_MAR08304">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GALGALGALTHCRMte"/>
@@ -329582,13 +329559,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01916c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01916c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01916e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01916e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08311" sboTerm="SBO:0000185" id="MAR08311" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08311" sboTerm="SBO:0000185" id="R_MAR08311" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -329596,7 +329573,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08311">
+            <rdf:Description rdf:about="#R_MAR08311">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FUCFUCGALACGLCGALGLUSIDEte"/>
@@ -329608,13 +329585,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01852c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01852c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01852e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01852e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08313" sboTerm="SBO:0000185" id="MAR08313" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08313" sboTerm="SBO:0000185" id="R_MAR08313" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -329622,7 +329599,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08313">
+            <rdf:Description rdf:about="#R_MAR08313">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FUCFUCFUCGALACGLCGAL14ACGLCGALGLUSIDEte"/>
@@ -329634,13 +329611,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01851c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01851c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01851e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01851e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08315" sboTerm="SBO:0000185" id="MAR08315" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08315" sboTerm="SBO:0000185" id="R_MAR08315" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -329648,7 +329625,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08315">
+            <rdf:Description rdf:about="#R_MAR08315">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FUCGAL14ACGLCGALGLUSIDEte"/>
@@ -329660,13 +329637,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01853c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01853c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01853e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01853e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08321" sboTerm="SBO:0000185" id="MAR08321" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08321" sboTerm="SBO:0000185" id="R_MAR08321" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -329674,7 +329651,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08321">
+            <rdf:Description rdf:about="#R_MAR08321">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FUCFUC12GAL14ACGLCGALGLUSIDEte"/>
@@ -329686,13 +329663,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02198c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02198c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02198e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02198e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08324" sboTerm="SBO:0000185" id="MAR08324" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08324" sboTerm="SBO:0000185" id="R_MAR08324" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -329700,7 +329677,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08324">
+            <rdf:Description rdf:about="#R_MAR08324">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FUCGALFUCGALACGLCGALGLUSIDEte"/>
@@ -329712,13 +329689,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02331c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02331c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02331e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02331e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08329" sboTerm="SBO:0000185" id="MAR08329" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08329" sboTerm="SBO:0000185" id="R_MAR08329" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -329726,7 +329703,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08329">
+            <rdf:Description rdf:about="#R_MAR08329">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ACNACNGAL14ACGLCGALGLUSIDEte"/>
@@ -329738,13 +329715,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00744c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00744c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00744e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00744e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08336" sboTerm="SBO:0000185" id="MAR08336" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08336" sboTerm="SBO:0000185" id="R_MAR08336" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -329752,7 +329729,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08336">
+            <rdf:Description rdf:about="#R_MAR08336">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FUC14GALACGLCGALGLUSIDEte"/>
@@ -329764,13 +329741,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02164c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02164c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02164e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02164e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08339" sboTerm="SBO:0000185" id="MAR08339" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08339" sboTerm="SBO:0000185" id="R_MAR08339" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -329778,7 +329755,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08339">
+            <rdf:Description rdf:about="#R_MAR08339">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ACNGALACGLCGAL14ACGLCGALGLUSIDEte"/>
@@ -329790,13 +329767,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03138c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03138c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03138e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03138e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08340" sboTerm="SBO:0000185" id="MAR08340" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08340" sboTerm="SBO:0000185" id="R_MAR08340" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -329804,7 +329781,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08340">
+            <rdf:Description rdf:about="#R_MAR08340">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ARAB_Lt"/>
@@ -329815,13 +329792,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02337c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02337c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02337e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02337e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08343" sboTerm="SBO:0000185" id="MAR08343" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08343" sboTerm="SBO:0000185" id="R_MAR08343" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -329829,7 +329806,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08343">
+            <rdf:Description rdf:about="#R_MAR08343">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ABTt"/>
@@ -329841,13 +329818,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02338c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02338c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02338e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02338e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08354" sboTerm="SBO:0000185" id="MAR08354" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08354" sboTerm="SBO:0000185" id="R_MAR08354" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -329855,7 +329832,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08354">
+            <rdf:Description rdf:about="#R_MAR08354">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ABUTt2r"/>
@@ -329867,18 +329844,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00970e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00970e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00970c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00970c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG13384"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08364" sboTerm="SBO:0000185" id="MAR08364" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08364" sboTerm="SBO:0000185" id="R_MAR08364" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -329886,7 +329863,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08364">
+            <rdf:Description rdf:about="#R_MAR08364">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ACETONEt2"/>
@@ -329898,18 +329875,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01256e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01256e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01256c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01256c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="hrm"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08374" sboTerm="SBO:0000185" id="MAR08374" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08374" sboTerm="SBO:0000185" id="R_MAR08374" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -329917,7 +329894,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08374">
+            <rdf:Description rdf:about="#R_MAR08374">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_8374"/>
@@ -329927,13 +329904,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01438c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01438c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01438e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01438e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08408" sboTerm="SBO:0000185" id="MAR08408" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08408" sboTerm="SBO:0000185" id="R_MAR08408" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -329941,7 +329918,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08408">
+            <rdf:Description rdf:about="#R_MAR08408">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/H2O2t"/>
@@ -329953,13 +329930,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02041c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02041e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08420" sboTerm="SBO:0000185" id="MAR08420" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08420" sboTerm="SBO:0000185" id="R_MAR08420" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -329967,7 +329944,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08420">
+            <rdf:Description rdf:about="#R_MAR08420">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/DMNONCRNt"/>
@@ -329980,13 +329957,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00577c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00577c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00577e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00577e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08515" sboTerm="SBO:0000185" id="MAR08515" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08515" sboTerm="SBO:0000185" id="R_MAR08515" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -329994,7 +329971,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08515">
+            <rdf:Description rdf:about="#R_MAR08515">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/L_LACt4r"/>
@@ -330005,18 +329982,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02403e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02403e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02403c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02403c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG10444"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08520" sboTerm="SBO:0000185" id="MAR08520" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08520" sboTerm="SBO:0000185" id="R_MAR08520" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -330024,7 +330001,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08520">
+            <rdf:Description rdf:about="#R_MAR08520">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/AK2LGCHOLt"/>
@@ -330036,13 +330013,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00516c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00516c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00516e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00516e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08536" sboTerm="SBO:0000185" id="MAR08536" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08536" sboTerm="SBO:0000185" id="R_MAR08536" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -330050,7 +330027,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08536">
+            <rdf:Description rdf:about="#R_MAR08536">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/TYMSFt"/>
@@ -330062,13 +330039,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03100c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03100c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03100e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03100e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08551" sboTerm="SBO:0000185" id="MAR08551" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08551" sboTerm="SBO:0000185" id="R_MAR08551" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -330076,7 +330053,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08551">
+            <rdf:Description rdf:about="#R_MAR08551">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/LEUKTRC4t"/>
@@ -330088,12 +330065,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02366e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02366e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02366c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02366c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -330105,7 +330082,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08567" sboTerm="SBO:0000185" id="MAR08567" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08567" sboTerm="SBO:0000185" id="R_MAR08567" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -330113,7 +330090,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08567">
+            <rdf:Description rdf:about="#R_MAR08567">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_8567"/>
@@ -330123,13 +330100,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02445c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02445c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02445e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02445e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08586" sboTerm="SBO:0000185" id="MAR08586" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08586" sboTerm="SBO:0000185" id="R_MAR08586" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -330137,7 +330114,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08586">
+            <rdf:Description rdf:about="#R_MAR08586">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/MALTt1r"/>
@@ -330149,16 +330126,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02450c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02450c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02450e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02450e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Glut1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08593" sboTerm="SBO:0000185" id="MAR08593" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08593" sboTerm="SBO:0000185" id="R_MAR08593" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -330166,7 +330143,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08593">
+            <rdf:Description rdf:about="#R_MAR08593">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ANDRSTRNte"/>
@@ -330178,13 +330155,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01338c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01338c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01338e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01338e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08595" sboTerm="SBO:0000185" id="MAR08595" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08595" sboTerm="SBO:0000185" id="R_MAR08595" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -330192,7 +330169,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08595">
+            <rdf:Description rdf:about="#R_MAR08595">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/LIMNENte"/>
@@ -330204,13 +330181,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02386c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02386c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02386e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02386e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08597" sboTerm="SBO:0000185" id="MAR08597" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08597" sboTerm="SBO:0000185" id="R_MAR08597" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -330218,7 +330195,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08597">
+            <rdf:Description rdf:about="#R_MAR08597">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CAT2p"/>
@@ -330230,13 +330207,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00001c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00001c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00001e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00001e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08599" sboTerm="SBO:0000185" id="MAR08599" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08599" sboTerm="SBO:0000185" id="R_MAR08599" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -330244,7 +330221,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08599">
+            <rdf:Description rdf:about="#R_MAR08599">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PERILLYLte"/>
@@ -330256,13 +330233,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02712c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02712c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02712e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02712e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08600" sboTerm="SBO:0000185" id="MAR08600" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08600" sboTerm="SBO:0000185" id="R_MAR08600" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -330270,7 +330247,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08600">
+            <rdf:Description rdf:about="#R_MAR08600">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/APPNNte"/>
@@ -330282,13 +330259,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00002c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00002c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00002e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00002e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08602" sboTerm="SBO:0000185" id="MAR08602" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08602" sboTerm="SBO:0000185" id="R_MAR08602" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -330296,7 +330273,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08602">
+            <rdf:Description rdf:about="#R_MAR08602">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/APNNOXte"/>
@@ -330308,13 +330285,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01326c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01326c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01326e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01326e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08612" sboTerm="SBO:0000185" id="MAR08612" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08612" sboTerm="SBO:0000185" id="R_MAR08612" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -330322,7 +330299,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08612">
+            <rdf:Description rdf:about="#R_MAR08612">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/AQCOBALt"/>
@@ -330334,13 +330311,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01361e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01361e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01361c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01361c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08618" sboTerm="SBO:0000185" id="MAR08618" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08618" sboTerm="SBO:0000185" id="R_MAR08618" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -330348,7 +330325,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08618">
+            <rdf:Description rdf:about="#R_MAR08618">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ASCBt"/>
@@ -330360,13 +330337,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01368c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01368c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01368e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01368e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08629" sboTerm="SBO:0000185" id="MAR08629" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08629" sboTerm="SBO:0000185" id="R_MAR08629" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -330374,7 +330351,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08629">
+            <rdf:Description rdf:about="#R_MAR08629">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ARGt4"/>
@@ -330386,18 +330363,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01365e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01365e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01365c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01365c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="GlyT"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08631" sboTerm="SBO:0000185" id="MAR08631" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08631" sboTerm="SBO:0000185" id="R_MAR08631" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -330405,7 +330382,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08631">
+            <rdf:Description rdf:about="#R_MAR08631">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/BILDGLCURt"/>
@@ -330417,12 +330394,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01397e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01397e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01397c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01397c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -330434,7 +330411,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08632" sboTerm="SBO:0000185" id="MAR08632" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08632" sboTerm="SBO:0000185" id="R_MAR08632" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -330442,7 +330419,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08632">
+            <rdf:Description rdf:about="#R_MAR08632">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/BILGLCURt"/>
@@ -330454,12 +330431,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01398e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01398e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01398c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01398c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -330471,7 +330448,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08633" sboTerm="SBO:0000185" id="MAR08633" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08633" sboTerm="SBO:0000185" id="R_MAR08633" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -330479,7 +330456,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08633">
+            <rdf:Description rdf:about="#R_MAR08633">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/BILGLCURte"/>
@@ -330492,21 +330469,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01398c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01398c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01398e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01398e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="MRP"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08635" sboTerm="SBO:0000185" id="MAR08635" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08635" sboTerm="SBO:0000185" id="R_MAR08635" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -330514,7 +330491,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08635">
+            <rdf:Description rdf:about="#R_MAR08635">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/BILIRUBt2"/>
@@ -330526,12 +330503,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01396e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01396e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01396c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01396c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -330543,7 +330520,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08636" sboTerm="SBO:0000185" id="MAR08636" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08636" sboTerm="SBO:0000185" id="R_MAR08636" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -330551,7 +330528,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08636">
+            <rdf:Description rdf:about="#R_MAR08636">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CSPG_At"/>
@@ -330564,16 +330541,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01632c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01632c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01632e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01632e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Ent1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08656" sboTerm="SBO:0000185" id="MAR08656" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08656" sboTerm="SBO:0000185" id="R_MAR08656" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -330581,7 +330558,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08656">
+            <rdf:Description rdf:about="#R_MAR08656">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CCA_D3tm"/>
@@ -330593,13 +330570,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01418c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01418c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01418e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01418e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08658" sboTerm="SBO:0000185" id="MAR08658" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08658" sboTerm="SBO:0000185" id="R_MAR08658" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -330607,7 +330584,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08658">
+            <rdf:Description rdf:about="#R_MAR08658">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CHOLD2m"/>
@@ -330621,15 +330598,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01445c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01445c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01445e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01445e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -330638,7 +330615,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08659" sboTerm="SBO:0000185" id="MAR08659" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08659" sboTerm="SBO:0000185" id="R_MAR08659" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -330646,7 +330623,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08659">
+            <rdf:Description rdf:about="#R_MAR08659">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CHOLATEt2"/>
@@ -330658,12 +330635,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01445e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01445e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01445c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01445c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -330675,7 +330652,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08660" sboTerm="SBO:0000185" id="MAR08660" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08660" sboTerm="SBO:0000185" id="R_MAR08660" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -330683,7 +330660,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08660">
+            <rdf:Description rdf:about="#R_MAR08660">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CHOLATEt3"/>
@@ -330695,12 +330672,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01445e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01445e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="2" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01445c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01445c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="2" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -330709,7 +330686,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08670" sboTerm="SBO:0000185" id="MAR08670" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08670" sboTerm="SBO:0000185" id="R_MAR08670" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -330717,7 +330694,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08670">
+            <rdf:Description rdf:about="#R_MAR08670">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CLHCO3tex2"/>
@@ -330729,18 +330706,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01442e" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM01833c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01442e" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01833c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01442c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM01833e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01442c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01833e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Prestin"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08671" sboTerm="SBO:0000185" id="MAR08671" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08671" sboTerm="SBO:0000185" id="R_MAR08671" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -330748,7 +330725,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08671">
+            <rdf:Description rdf:about="#R_MAR08671">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CLOHtex2"/>
@@ -330760,18 +330737,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01442e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02174c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01442e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02174c" stoichiometry="2" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01442c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02174e" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01442c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02174e" stoichiometry="2" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Prestin"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08676" sboTerm="SBO:0000185" id="MAR08676" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08676" sboTerm="SBO:0000185" id="R_MAR08676" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -330779,7 +330756,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08676">
+            <rdf:Description rdf:about="#R_MAR08676">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CRNtHa"/>
@@ -330791,16 +330768,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02348e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Orct"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08677" sboTerm="SBO:0000185" id="MAR08677" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08677" sboTerm="SBO:0000185" id="R_MAR08677" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -330808,7 +330785,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08677">
+            <rdf:Description rdf:about="#R_MAR08677">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CRNtx"/>
@@ -330821,12 +330798,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02348e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -330848,7 +330825,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08678" sboTerm="SBO:0000185" id="MAR08678" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08678" sboTerm="SBO:0000185" id="R_MAR08678" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -330856,7 +330833,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08678">
+            <rdf:Description rdf:about="#R_MAR08678">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CRTSLtm"/>
@@ -330868,13 +330845,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01615c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01615c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01615e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01615e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08679" sboTerm="SBO:0000185" id="MAR08679" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08679" sboTerm="SBO:0000185" id="R_MAR08679" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -330882,7 +330859,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08679">
+            <rdf:Description rdf:about="#R_MAR08679">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CRTSTRNtm"/>
@@ -330894,13 +330871,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01614c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01614c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01614e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01614e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08686" sboTerm="SBO:0000185" id="MAR08686" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08686" sboTerm="SBO:0000185" id="R_MAR08686" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -330908,7 +330885,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08686">
+            <rdf:Description rdf:about="#R_MAR08686">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/MERCPLACCYSt"/>
@@ -330920,13 +330897,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00816c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00816c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00816e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00816e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08687" sboTerm="SBO:0000185" id="MAR08687" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08687" sboTerm="SBO:0000185" id="R_MAR08687" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -330934,7 +330911,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08687">
+            <rdf:Description rdf:about="#R_MAR08687">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CYTD"/>
@@ -330947,12 +330924,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01629e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02896c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01629e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02896c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01629c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02896e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01629c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02896e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:and>
@@ -330964,7 +330941,7 @@
           </fbc:and>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08696" sboTerm="SBO:0000185" id="MAR08696" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08696" sboTerm="SBO:0000185" id="R_MAR08696" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -330972,7 +330949,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08696">
+            <rdf:Description rdf:about="#R_MAR08696">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CARVEOLte"/>
@@ -330984,13 +330961,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01385c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01385c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01385e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01385e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08714" sboTerm="SBO:0000185" id="MAR08714" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08714" sboTerm="SBO:0000185" id="R_MAR08714" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -330998,7 +330975,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08714">
+            <rdf:Description rdf:about="#R_MAR08714">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/RETNGLCt"/>
@@ -331010,13 +330987,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02836c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02836c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02836e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02836e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08718" sboTerm="SBO:0000185" id="MAR08718" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08718" sboTerm="SBO:0000185" id="R_MAR08718" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -331024,7 +331001,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08718">
+            <rdf:Description rdf:about="#R_MAR08718">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/RETNGLCt2"/>
@@ -331036,13 +331013,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00353c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00353c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00353e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00353e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08720" sboTerm="SBO:0000185" id="MAR08720" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08720" sboTerm="SBO:0000185" id="R_MAR08720" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -331050,7 +331027,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08720">
+            <rdf:Description rdf:about="#R_MAR08720">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/RETFAt"/>
@@ -331062,13 +331039,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM10005c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM10005c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM10005e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM10005e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08721" sboTerm="SBO:0000185" id="MAR08721" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08721" sboTerm="SBO:0000185" id="R_MAR08721" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -331076,7 +331053,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08721">
+            <rdf:Description rdf:about="#R_MAR08721">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/RETNt"/>
@@ -331088,13 +331065,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02833c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02833c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02833e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02833e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08723" sboTerm="SBO:0000185" id="MAR08723" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08723" sboTerm="SBO:0000185" id="R_MAR08723" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -331102,7 +331079,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08723">
+            <rdf:Description rdf:about="#R_MAR08723">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/DOPASFt"/>
@@ -331113,13 +331090,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01737c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01737c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01737e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01737e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08730" sboTerm="SBO:0000185" id="MAR08730" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08730" sboTerm="SBO:0000185" id="R_MAR08730" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 2</p>
@@ -331127,7 +331104,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08730">
+            <rdf:Description rdf:about="#R_MAR08730">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/RIBFLVt3"/>
@@ -331141,21 +331118,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02842e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02842e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02842c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02842c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Rift"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08732" sboTerm="SBO:0000185" id="MAR08732" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08732" sboTerm="SBO:0000185" id="R_MAR08732" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -331163,7 +331140,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08732">
+            <rdf:Description rdf:about="#R_MAR08732">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/SELt4_3"/>
@@ -331175,15 +331152,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02519e" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM02885e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM02885e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02519c" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM02885c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM02885c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08733" sboTerm="SBO:0000185" id="MAR08733" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08733" sboTerm="SBO:0000185" id="R_MAR08733" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -331191,7 +331168,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08733">
+            <rdf:Description rdf:about="#R_MAR08733">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/SERDGLNexR"/>
@@ -331203,12 +331180,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01744c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01975e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01744c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01975e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01744e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01975c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01744e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01975c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:and>
@@ -331217,7 +331194,7 @@
           </fbc:and>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08734" sboTerm="SBO:0000185" id="MAR08734" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08734" sboTerm="SBO:0000185" id="R_MAR08734" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -331225,7 +331202,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08734">
+            <rdf:Description rdf:about="#R_MAR08734">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/SERDGLYexR"/>
@@ -331237,12 +331214,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01744c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01986e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01744c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01744e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01986c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01744e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:and>
@@ -331251,7 +331228,7 @@
           </fbc:and>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08735" sboTerm="SBO:0000185" id="MAR08735" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08735" sboTerm="SBO:0000185" id="R_MAR08735" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -331259,7 +331236,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08735">
+            <rdf:Description rdf:about="#R_MAR08735">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/SERtN1"/>
@@ -331271,20 +331248,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02896e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02896e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02896c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02896c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="mah"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08736" sboTerm="SBO:0000185" id="MAR08736" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08736" sboTerm="SBO:0000185" id="R_MAR08736" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -331292,7 +331269,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08736">
+            <rdf:Description rdf:about="#R_MAR08736">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/SO4OXAtex2"/>
@@ -331304,18 +331281,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02661c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02946e" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02661c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02946e" stoichiometry="2" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02661e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02946c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02661e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02946c" stoichiometry="2" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Prestin"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08760" sboTerm="SBO:0000185" id="MAR08760" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08760" sboTerm="SBO:0000185" id="R_MAR08760" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -331323,7 +331300,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08760">
+            <rdf:Description rdf:about="#R_MAR08760">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/TAGAT_Dt"/>
@@ -331334,13 +331311,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01745e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01745e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01745c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01745c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08797" sboTerm="SBO:0000185" id="MAR08797" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08797" sboTerm="SBO:0000185" id="R_MAR08797" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -331348,7 +331325,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08797">
+            <rdf:Description rdf:about="#R_MAR08797">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PHEACGLNt"/>
@@ -331360,13 +331337,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02722c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02722c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02722e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02722e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08798" sboTerm="SBO:0000185" id="MAR08798" name="Transport of phenylacetylglycine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08798" sboTerm="SBO:0000185" id="R_MAR08798" name="Transport of phenylacetylglycine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 4</p>
@@ -331375,7 +331352,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08798">
+            <rdf:Description rdf:about="#R_MAR08798">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PHEACGLYsec"/>
@@ -331388,13 +331365,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02723c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02723c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02723e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02723e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08846" sboTerm="SBO:0000185" id="MAR08846" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08846" sboTerm="SBO:0000185" id="R_MAR08846" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -331402,7 +331379,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08846">
+            <rdf:Description rdf:about="#R_MAR08846">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/DHCHOLESTANATEtm"/>
@@ -331414,16 +331391,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01655c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01655c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01655e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01655e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Glut1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08847" sboTerm="SBO:0000185" id="MAR08847" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08847" sboTerm="SBO:0000185" id="R_MAR08847" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -331431,7 +331408,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08847">
+            <rdf:Description rdf:about="#R_MAR08847">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/DHEAtr"/>
@@ -331443,12 +331420,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01659e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01659e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01659c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01659c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -331460,7 +331437,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08849" sboTerm="SBO:0000185" id="MAR08849" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08849" sboTerm="SBO:0000185" id="R_MAR08849" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -331468,7 +331445,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08849">
+            <rdf:Description rdf:about="#R_MAR08849">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/TRIODTHYSUFt"/>
@@ -331480,13 +331457,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00734c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00734c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00734e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00734e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08850" sboTerm="SBO:0000185" id="MAR08850" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08850" sboTerm="SBO:0000185" id="R_MAR08850" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -331494,7 +331471,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08850">
+            <rdf:Description rdf:about="#R_MAR08850">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/TSTSTERONEGLCte"/>
@@ -331507,21 +331484,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02967c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02967c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02967e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02967e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="MRP"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08852" sboTerm="SBO:0000185" id="MAR08852" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08852" sboTerm="SBO:0000185" id="R_MAR08852" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -331529,7 +331506,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08852">
+            <rdf:Description rdf:about="#R_MAR08852">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/TSTSTERONEt"/>
@@ -331541,13 +331518,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02969c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02969c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02969e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02969e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08853" sboTerm="SBO:0000185" id="MAR08853" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08853" sboTerm="SBO:0000185" id="R_MAR08853" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -331555,7 +331532,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08853">
+            <rdf:Description rdf:about="#R_MAR08853">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/TSULt4_3"/>
@@ -331567,15 +331544,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02519e" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM02991e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM02991e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02519c" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM02991c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM02991c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08854" sboTerm="SBO:0000185" id="MAR08854" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08854" sboTerm="SBO:0000185" id="R_MAR08854" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -331583,7 +331560,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08854">
+            <rdf:Description rdf:about="#R_MAR08854">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/TXA2te"/>
@@ -331595,13 +331572,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02994c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02994c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02994e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02994e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08863" sboTerm="SBO:0000185" id="MAR08863" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08863" sboTerm="SBO:0000185" id="R_MAR08863" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -331609,7 +331586,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08863">
+            <rdf:Description rdf:about="#R_MAR08863">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/WHDDCAte"/>
@@ -331621,13 +331598,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00325c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00325c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00325e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00325e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08864" sboTerm="SBO:0000185" id="MAR08864" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08864" sboTerm="SBO:0000185" id="R_MAR08864" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -331635,7 +331612,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08864">
+            <rdf:Description rdf:about="#R_MAR08864">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/WHTTDCAte"/>
@@ -331647,13 +331624,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00371c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00371e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00371e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08865" sboTerm="SBO:0000185" id="MAR08865" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08865" sboTerm="SBO:0000185" id="R_MAR08865" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -331661,7 +331638,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08865">
+            <rdf:Description rdf:about="#R_MAR08865">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/WHHDCAte"/>
@@ -331673,13 +331650,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00403c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00403c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00403e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00403e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08866" sboTerm="SBO:0000185" id="MAR08866" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08866" sboTerm="SBO:0000185" id="R_MAR08866" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -331687,7 +331664,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08866">
+            <rdf:Description rdf:about="#R_MAR08866">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/WHTSTSTERONEte"/>
@@ -331699,13 +331676,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00432c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00432c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00432e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00432e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08867" sboTerm="SBO:0000185" id="MAR08867" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08867" sboTerm="SBO:0000185" id="R_MAR08867" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -331713,7 +331690,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08867">
+            <rdf:Description rdf:about="#R_MAR08867">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/XYLt"/>
@@ -331725,16 +331702,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01758c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01758c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01758e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01758e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Glut1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08869" sboTerm="SBO:0000185" id="MAR08869" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08869" sboTerm="SBO:0000185" id="R_MAR08869" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -331742,7 +331719,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08869">
+            <rdf:Description rdf:about="#R_MAR08869">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EBASTINEOHtr"/>
@@ -331754,13 +331731,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01298c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01298c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01298e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01298e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08870" sboTerm="SBO:0000185" id="MAR08870" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08870" sboTerm="SBO:0000185" id="R_MAR08870" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -331768,7 +331745,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08870">
+            <rdf:Description rdf:about="#R_MAR08870">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ESTRIOLGLCte"/>
@@ -331780,13 +331757,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01787c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01787c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01787e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01787e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08873" sboTerm="SBO:0000185" id="MAR08873" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08873" sboTerm="SBO:0000185" id="R_MAR08873" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -331794,7 +331771,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08873">
+            <rdf:Description rdf:about="#R_MAR08873">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FUCASEe"/>
@@ -331806,13 +331783,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02199c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02199c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02199e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02199e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08878" sboTerm="SBO:0000185" id="MAR08878" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08878" sboTerm="SBO:0000185" id="R_MAR08878" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -331820,7 +331797,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08878">
+            <rdf:Description rdf:about="#R_MAR08878">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GCALDD"/>
@@ -331832,13 +331809,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01959c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01959c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01959e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01959e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08879" sboTerm="SBO:0000185" id="MAR08879" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08879" sboTerm="SBO:0000185" id="R_MAR08879" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -331846,7 +331823,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08879">
+            <rdf:Description rdf:about="#R_MAR08879">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GCHOLAt3"/>
@@ -331858,12 +331835,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01988e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01988e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01988c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01988c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -331875,7 +331852,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08881" sboTerm="SBO:0000185" id="MAR08881" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08881" sboTerm="SBO:0000185" id="R_MAR08881" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -331883,7 +331860,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08881">
+            <rdf:Description rdf:about="#R_MAR08881">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GD1Cte"/>
@@ -331895,13 +331872,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01944c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01944c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01944e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01944e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08883" sboTerm="SBO:0000185" id="MAR08883" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08883" sboTerm="SBO:0000185" id="R_MAR08883" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -331909,7 +331886,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08883">
+            <rdf:Description rdf:about="#R_MAR08883">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GDCHOLAte"/>
@@ -331921,13 +331898,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01945c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01945c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01945e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01945e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08892" sboTerm="SBO:0000185" id="MAR08892" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08892" sboTerm="SBO:0000185" id="R_MAR08892" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -331935,7 +331912,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08892">
+            <rdf:Description rdf:about="#R_MAR08892">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.6.3.10"/>
@@ -331947,18 +331924,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02200e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02200e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02200c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02200c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08893" sboTerm="SBO:0000185" id="MAR08893" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08893" sboTerm="SBO:0000185" id="R_MAR08893" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -331966,7 +331943,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08893">
+            <rdf:Description rdf:about="#R_MAR08893">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GLYC_St"/>
@@ -331977,13 +331954,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01982c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01982c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01982e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01982e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08896" sboTerm="SBO:0000185" id="MAR08896" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08896" sboTerm="SBO:0000185" id="R_MAR08896" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -331991,7 +331968,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08896">
+            <rdf:Description rdf:about="#R_MAR08896">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GP1CALPHAte"/>
@@ -332003,13 +331980,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02019c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02019c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02019e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02019e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08898" sboTerm="SBO:0000185" id="MAR08898" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08898" sboTerm="SBO:0000185" id="R_MAR08898" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -332017,7 +331994,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08898">
+            <rdf:Description rdf:about="#R_MAR08898">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GP1Cte"/>
@@ -332029,13 +332006,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02018c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02018c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02018e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02018e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08899" sboTerm="SBO:0000185" id="MAR08899" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08899" sboTerm="SBO:0000185" id="R_MAR08899" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -332043,7 +332020,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08899">
+            <rdf:Description rdf:about="#R_MAR08899">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GQ1BALPHAte"/>
@@ -332055,13 +332032,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02024c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02024c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02024e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02024e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08901" sboTerm="SBO:0000185" id="MAR08901" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08901" sboTerm="SBO:0000185" id="R_MAR08901" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -332069,7 +332046,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08901">
+            <rdf:Description rdf:about="#R_MAR08901">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GQ1Bte"/>
@@ -332081,13 +332058,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02023c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02023c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02023e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02023e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08903" sboTerm="SBO:0000185" id="MAR08903" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08903" sboTerm="SBO:0000185" id="R_MAR08903" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -332095,7 +332072,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08903">
+            <rdf:Description rdf:about="#R_MAR08903">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GT1Ate"/>
@@ -332107,13 +332084,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02028c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02028c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02028e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02028e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08905" sboTerm="SBO:0000185" id="MAR08905" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08905" sboTerm="SBO:0000185" id="R_MAR08905" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -332121,7 +332098,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08905">
+            <rdf:Description rdf:about="#R_MAR08905">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/HESTRATRIOLte"/>
@@ -332133,13 +332110,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00986c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00986c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00986e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00986e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08907" sboTerm="SBO:0000185" id="MAR08907" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08907" sboTerm="SBO:0000185" id="R_MAR08907" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -332147,7 +332124,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08907">
+            <rdf:Description rdf:about="#R_MAR08907">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/HPACtr"/>
@@ -332161,13 +332138,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01003c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01003c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01003e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01003e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08913" sboTerm="SBO:0000185" id="MAR08913" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08913" sboTerm="SBO:0000185" id="R_MAR08913" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -332175,7 +332152,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08913">
+            <rdf:Description rdf:about="#R_MAR08913">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/LCTStg"/>
@@ -332186,13 +332163,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02332g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02332g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02332c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02332c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08917" sboTerm="SBO:0000185" id="MAR08917" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08917" sboTerm="SBO:0000185" id="R_MAR08917" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -332200,7 +332177,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08917">
+            <rdf:Description rdf:about="#R_MAR08917">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/LYSt4"/>
@@ -332212,12 +332189,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02426e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02426e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02426c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02426c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -332226,7 +332203,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08922" sboTerm="SBO:0000185" id="MAR08922" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08922" sboTerm="SBO:0000185" id="R_MAR08922" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -332234,7 +332211,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08922">
+            <rdf:Description rdf:about="#R_MAR08922">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/MEPIVESSte"/>
@@ -332245,18 +332222,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02407c" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02407c" stoichiometry="3" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02407e" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02407e" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="2" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08923" sboTerm="SBO:0000185" id="MAR08923" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08923" sboTerm="SBO:0000185" id="R_MAR08923" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -332264,7 +332241,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08923">
+            <rdf:Description rdf:about="#R_MAR08923">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PHYQt"/>
@@ -332276,18 +332253,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02744e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02744e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02744c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02744c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08924" sboTerm="SBO:0000185" id="MAR08924" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08924" sboTerm="SBO:0000185" id="R_MAR08924" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -332295,7 +332272,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08924">
+            <rdf:Description rdf:about="#R_MAR08924">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/NAIt"/>
@@ -332307,18 +332284,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02174e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02174e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="2" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02174c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02174c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="2" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG10444"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08925" sboTerm="SBO:0000185" id="MAR08925" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08925" sboTerm="SBO:0000185" id="R_MAR08925" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -332326,7 +332303,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08925">
+            <rdf:Description rdf:about="#R_MAR08925">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/NAt5"/>
@@ -332337,18 +332314,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02578c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02578c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02578e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02578e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Nhe2"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08927" sboTerm="SBO:0000185" id="MAR08927" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08927" sboTerm="SBO:0000185" id="R_MAR08927" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -332356,7 +332333,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08927">
+            <rdf:Description rdf:about="#R_MAR08927">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ONPTHLte"/>
@@ -332368,13 +332345,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00032c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00032c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00032e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00032e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08929" sboTerm="SBO:0000185" id="MAR08929" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08929" sboTerm="SBO:0000185" id="R_MAR08929" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -332382,7 +332359,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08929">
+            <rdf:Description rdf:about="#R_MAR08929">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PRODt2r"/>
@@ -332394,18 +332371,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01742e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01742e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01742c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01742c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG13384"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08930" sboTerm="SBO:0000185" id="MAR08930" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08930" sboTerm="SBO:0000185" id="R_MAR08930" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -332413,7 +332390,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08930">
+            <rdf:Description rdf:about="#R_MAR08930">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PNTOt5"/>
@@ -332425,17 +332402,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02680e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02680e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02680c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02680c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -332444,7 +332421,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08931" sboTerm="SBO:0000185" id="MAR08931" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08931" sboTerm="SBO:0000185" id="R_MAR08931" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -332452,7 +332429,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08931">
+            <rdf:Description rdf:about="#R_MAR08931">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PRGSTRNt"/>
@@ -332464,13 +332441,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02769c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02769c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02769e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02769e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08932" sboTerm="SBO:0000185" id="MAR08932" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08932" sboTerm="SBO:0000185" id="R_MAR08932" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -332478,7 +332455,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08932">
+            <rdf:Description rdf:about="#R_MAR08932">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PROSTGD2t"/>
@@ -332490,12 +332467,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02783e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02783e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02783c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02783c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -332507,7 +332484,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08933" sboTerm="SBO:0000185" id="MAR08933" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08933" sboTerm="SBO:0000185" id="R_MAR08933" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -332515,7 +332492,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08933">
+            <rdf:Description rdf:about="#R_MAR08933">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PROSTGE1t"/>
@@ -332527,12 +332504,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02785e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02785e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02785c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02785c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -332544,7 +332521,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08934" sboTerm="SBO:0000185" id="MAR08934" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08934" sboTerm="SBO:0000185" id="R_MAR08934" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -332552,7 +332529,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08934">
+            <rdf:Description rdf:about="#R_MAR08934">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PROSTGE1t3"/>
@@ -332565,15 +332542,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02785c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02785c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02785e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02785e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -332582,7 +332559,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08935" sboTerm="SBO:0000185" id="MAR08935" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08935" sboTerm="SBO:0000185" id="R_MAR08935" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -332590,7 +332567,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08935">
+            <rdf:Description rdf:about="#R_MAR08935">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PROSTGE2t3"/>
@@ -332603,15 +332580,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02786c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02786c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02786e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02786e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -332620,7 +332597,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08936" sboTerm="SBO:0000185" id="MAR08936" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08936" sboTerm="SBO:0000185" id="R_MAR08936" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -332628,7 +332605,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08936">
+            <rdf:Description rdf:about="#R_MAR08936">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PROSTGH2t"/>
@@ -332640,12 +332617,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02794e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02794e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02794c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02794c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -332657,7 +332634,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08937" sboTerm="SBO:0000185" id="MAR08937" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08937" sboTerm="SBO:0000185" id="R_MAR08937" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -332665,7 +332642,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08937">
+            <rdf:Description rdf:about="#R_MAR08937">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PROSTGI2t"/>
@@ -332677,15 +332654,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02795e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02795e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02795c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02795c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08938" sboTerm="SBO:0000185" id="MAR08938" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08938" sboTerm="SBO:0000185" id="R_MAR08938" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -332693,7 +332670,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08938">
+            <rdf:Description rdf:about="#R_MAR08938">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PROt4_2_r"/>
@@ -332704,12 +332681,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02519e" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02770e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02770e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02519c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02770c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02770c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -332723,7 +332700,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08939" sboTerm="SBO:0000185" id="MAR08939" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08939" sboTerm="SBO:0000185" id="R_MAR08939" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -332731,7 +332708,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08939">
+            <rdf:Description rdf:about="#R_MAR08939">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.-"/>
@@ -332744,12 +332721,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02674e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02674e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02674c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02674c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -332758,7 +332735,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08940" sboTerm="SBO:0000185" id="MAR08940" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08940" sboTerm="SBO:0000185" id="R_MAR08940" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -332766,7 +332743,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08940">
+            <rdf:Description rdf:about="#R_MAR08940">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.-"/>
@@ -332779,12 +332756,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02646e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02646e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02646c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02646c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -332793,7 +332770,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08941" sboTerm="SBO:0000185" id="MAR08941" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08941" sboTerm="SBO:0000185" id="R_MAR08941" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -332801,7 +332778,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08941">
+            <rdf:Description rdf:about="#R_MAR08941">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.-"/>
@@ -332814,12 +332791,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02938e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02938e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02938c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02938c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -332828,7 +332805,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08942" sboTerm="SBO:0000185" id="MAR08942" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08942" sboTerm="SBO:0000185" id="R_MAR08942" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -332836,7 +332813,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08942">
+            <rdf:Description rdf:about="#R_MAR08942">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.-"/>
@@ -332849,12 +332826,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01771e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01771e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01771c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01771c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -332863,7 +332840,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08943" sboTerm="SBO:0000185" id="MAR08943" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08943" sboTerm="SBO:0000185" id="R_MAR08943" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -332871,7 +332848,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08943">
+            <rdf:Description rdf:about="#R_MAR08943">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.-"/>
@@ -332884,12 +332861,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01362e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01362e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01362c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01362c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -332898,7 +332875,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08944" sboTerm="SBO:0000185" id="MAR08944" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08944" sboTerm="SBO:0000185" id="R_MAR08944" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -332906,7 +332883,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08944">
+            <rdf:Description rdf:about="#R_MAR08944">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.-"/>
@@ -332919,12 +332896,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01291e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01291e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01291c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01291c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -332933,7 +332910,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08945" sboTerm="SBO:0000185" id="MAR08945" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08945" sboTerm="SBO:0000185" id="R_MAR08945" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -332941,7 +332918,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08945">
+            <rdf:Description rdf:about="#R_MAR08945">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.-"/>
@@ -332954,12 +332931,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01689e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01689e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01689c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01689c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -332968,7 +332945,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08946" sboTerm="SBO:0000185" id="MAR08946" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08946" sboTerm="SBO:0000185" id="R_MAR08946" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -332976,7 +332953,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08946">
+            <rdf:Description rdf:about="#R_MAR08946">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.-"/>
@@ -332989,12 +332966,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02385e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02385e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02385c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02385c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -333003,7 +332980,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08947" sboTerm="SBO:0000185" id="MAR08947" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08947" sboTerm="SBO:0000185" id="R_MAR08947" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -333011,7 +332988,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08947">
+            <rdf:Description rdf:about="#R_MAR08947">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.-"/>
@@ -333024,12 +333001,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02564e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02564e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02564c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02564c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -333038,7 +333015,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR09173" sboTerm="SBO:0000185" id="MAR09173" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09173" sboTerm="SBO:0000185" id="R_MAR09173" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -333046,7 +333023,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09173">
+            <rdf:Description rdf:about="#R_MAR09173">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_9173"/>
@@ -333056,13 +333033,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03154c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03154c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03154e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03154e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09175" sboTerm="SBO:0000185" id="MAR09175" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09175" sboTerm="SBO:0000185" id="R_MAR09175" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -333070,7 +333047,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09175">
+            <rdf:Description rdf:about="#R_MAR09175">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_9175"/>
@@ -333080,13 +333057,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02191c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02191c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02191e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02191e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09176" sboTerm="SBO:0000185" id="MAR09176" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09176" sboTerm="SBO:0000185" id="R_MAR09176" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -333094,7 +333071,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09176">
+            <rdf:Description rdf:about="#R_MAR09176">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_9176"/>
@@ -333104,13 +333081,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01788c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01788c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01788e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01788e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09178" sboTerm="SBO:0000185" id="MAR09178" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09178" sboTerm="SBO:0000185" id="R_MAR09178" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -333118,7 +333095,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09178">
+            <rdf:Description rdf:about="#R_MAR09178">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_9178"/>
@@ -333128,13 +333105,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01800c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01800c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01800e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01800e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09180" sboTerm="SBO:0000185" id="MAR09180" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09180" sboTerm="SBO:0000185" id="R_MAR09180" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -333142,7 +333119,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09180">
+            <rdf:Description rdf:about="#R_MAR09180">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_9180"/>
@@ -333152,13 +333129,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01740c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01740c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01740e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01740e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09182" sboTerm="SBO:0000185" id="MAR09182" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09182" sboTerm="SBO:0000185" id="R_MAR09182" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -333166,7 +333143,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09182">
+            <rdf:Description rdf:about="#R_MAR09182">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/ARG_Dte"/>
@@ -333176,13 +333153,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01640c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01640c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01640e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01640e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09183" sboTerm="SBO:0000185" id="MAR09183" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09183" sboTerm="SBO:0000185" id="R_MAR09183" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -333190,7 +333167,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09183">
+            <rdf:Description rdf:about="#R_MAR09183">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_9183"/>
@@ -333200,13 +333177,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01286c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01286c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01286e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01286e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09184" sboTerm="SBO:0000185" id="MAR09184" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09184" sboTerm="SBO:0000185" id="R_MAR09184" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -333214,7 +333191,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09184">
+            <rdf:Description rdf:about="#R_MAR09184">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_9184"/>
@@ -333224,13 +333201,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01287c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01287c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01287e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01287e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09185" sboTerm="SBO:0000185" id="MAR09185" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09185" sboTerm="SBO:0000185" id="R_MAR09185" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -333238,7 +333215,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09185">
+            <rdf:Description rdf:about="#R_MAR09185">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_9185"/>
@@ -333248,13 +333225,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01743c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01743c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01743e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01743e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09187" sboTerm="SBO:0000185" id="MAR09187" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09187" sboTerm="SBO:0000185" id="R_MAR09187" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -333262,7 +333239,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09187">
+            <rdf:Description rdf:about="#R_MAR09187">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_9187"/>
@@ -333272,13 +333249,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01966c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01966c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01966e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01966e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09188" sboTerm="SBO:0000185" id="MAR09188" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09188" sboTerm="SBO:0000185" id="R_MAR09188" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -333286,7 +333263,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09188">
+            <rdf:Description rdf:about="#R_MAR09188">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_9188"/>
@@ -333296,13 +333273,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02155c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02155c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02155e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02155e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09189" sboTerm="SBO:0000185" id="MAR09189" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09189" sboTerm="SBO:0000185" id="R_MAR09189" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -333310,7 +333287,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09189">
+            <rdf:Description rdf:about="#R_MAR09189">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_9189"/>
@@ -333320,13 +333297,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01989c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01989c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01989e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01989e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09190" sboTerm="SBO:0000185" id="MAR09190" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09190" sboTerm="SBO:0000185" id="R_MAR09190" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -333334,7 +333311,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09190">
+            <rdf:Description rdf:about="#R_MAR09190">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/ALA-DTDe"/>
@@ -333344,10 +333321,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01638e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01638e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01638c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01638c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:and>
@@ -333356,7 +333333,7 @@
           </fbc:and>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR09191" sboTerm="SBO:0000185" id="MAR09191" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09191" sboTerm="SBO:0000185" id="R_MAR09191" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -333364,7 +333341,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09191">
+            <rdf:Description rdf:about="#R_MAR09191">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_9191"/>
@@ -333376,10 +333353,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01744e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01744e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01744c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01744c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:and>
@@ -333388,7 +333365,7 @@
           </fbc:and>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR09192" sboTerm="SBO:0000185" id="MAR09192" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09192" sboTerm="SBO:0000185" id="R_MAR09192" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -333396,7 +333373,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09192">
+            <rdf:Description rdf:about="#R_MAR09192">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/ADRNLtu"/>
@@ -333406,10 +333383,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01290c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01290c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01290e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01290e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -333418,7 +333395,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR09193" sboTerm="SBO:0000185" id="MAR09193" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09193" sboTerm="SBO:0000185" id="R_MAR09193" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -333426,7 +333403,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09193">
+            <rdf:Description rdf:about="#R_MAR09193">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/AGRMte"/>
@@ -333436,16 +333413,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01303c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01303c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01303e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01303e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG6126"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR09195" sboTerm="SBO:0000185" id="MAR09195" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09195" sboTerm="SBO:0000185" id="R_MAR09195" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -333453,7 +333430,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09195">
+            <rdf:Description rdf:about="#R_MAR09195">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/CRTNtr"/>
@@ -333463,16 +333440,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01621c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01621c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01621e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01621e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG6126"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR09196" sboTerm="SBO:0000185" id="MAR09196" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09196" sboTerm="SBO:0000185" id="R_MAR09196" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -333480,7 +333457,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09196">
+            <rdf:Description rdf:about="#R_MAR09196">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/FE3MTP1"/>
@@ -333490,10 +333467,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01822e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01822e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01822c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01822c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -333502,7 +333479,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR09590" sboTerm="SBO:0000185" id="MAR09590" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09590" sboTerm="SBO:0000185" id="R_MAR09590" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -333510,7 +333487,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09590">
+            <rdf:Description rdf:about="#R_MAR09590">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_9590"/>
@@ -333520,18 +333497,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02946e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02946e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02946c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02946c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Prestin"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR09591" sboTerm="SBO:0000185" id="MAR09591" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09591" sboTerm="SBO:0000185" id="R_MAR09591" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -333539,7 +333516,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09591">
+            <rdf:Description rdf:about="#R_MAR09591">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/ALAATB0tc"/>
@@ -333549,20 +333526,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01307e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01442e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01307e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01442e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="2" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01307c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01442c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01307c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01442c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="2" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="GlyT"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR09592" sboTerm="SBO:0000185" id="MAR09592" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09592" sboTerm="SBO:0000185" id="R_MAR09592" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -333570,7 +333547,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09592">
+            <rdf:Description rdf:about="#R_MAR09592">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/ARGATB0tc"/>
@@ -333580,20 +333557,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01365e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01442e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01365e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01442e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="2" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01365c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01442c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01365c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01442c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="2" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="GlyT"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR09593" sboTerm="SBO:0000185" id="MAR09593" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09593" sboTerm="SBO:0000185" id="R_MAR09593" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -333601,7 +333578,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09593">
+            <rdf:Description rdf:about="#R_MAR09593">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_9593"/>
@@ -333611,20 +333588,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01442e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02125e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01442e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02125e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="2" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01442c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02125c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01442c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02125c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="2" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="GlyT"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR09594" sboTerm="SBO:0000185" id="MAR09594" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09594" sboTerm="SBO:0000185" id="R_MAR09594" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -333632,7 +333609,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09594">
+            <rdf:Description rdf:about="#R_MAR09594">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/ILEATB0tc"/>
@@ -333642,20 +333619,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01442e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02184e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01442e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02184e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="2" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01442c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02184c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01442c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02184c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="2" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="GlyT"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR09595" sboTerm="SBO:0000185" id="MAR09595" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09595" sboTerm="SBO:0000185" id="R_MAR09595" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -333663,7 +333640,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09595">
+            <rdf:Description rdf:about="#R_MAR09595">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/LEUATB0tc"/>
@@ -333673,20 +333650,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01442e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02360e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01442e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02360e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="2" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01442c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02360c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01442c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02360c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="2" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="GlyT"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR09596" sboTerm="SBO:0000185" id="MAR09596" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09596" sboTerm="SBO:0000185" id="R_MAR09596" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -333694,7 +333671,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09596">
+            <rdf:Description rdf:about="#R_MAR09596">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/LYSATB0tc"/>
@@ -333704,20 +333681,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01442e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02426e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01442e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02426e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="2" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01442c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02426c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01442c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02426c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="2" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="GlyT"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR09597" sboTerm="SBO:0000185" id="MAR09597" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09597" sboTerm="SBO:0000185" id="R_MAR09597" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -333725,7 +333702,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09597">
+            <rdf:Description rdf:about="#R_MAR09597">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/METATB0tc"/>
@@ -333735,20 +333712,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01442e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02471e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01442e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02471e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="2" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01442c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02471c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01442c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02471c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="2" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="GlyT"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR09598" sboTerm="SBO:0000185" id="MAR09598" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09598" sboTerm="SBO:0000185" id="R_MAR09598" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -333756,7 +333733,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09598">
+            <rdf:Description rdf:about="#R_MAR09598">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/VALATB0tc"/>
@@ -333766,20 +333743,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01442e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03135e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01442e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03135e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01442c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03135c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01442c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03135c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="GlyT"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR09599" sboTerm="SBO:0000185" id="MAR09599" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09599" sboTerm="SBO:0000185" id="R_MAR09599" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -333787,7 +333764,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09599">
+            <rdf:Description rdf:about="#R_MAR09599">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/CYSATB0tc"/>
@@ -333797,20 +333774,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01442e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01628e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01442e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01628e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="2" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01442c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01628c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01442c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01628c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="2" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="GlyT"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR09600" sboTerm="SBO:0000185" id="MAR09600" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09600" sboTerm="SBO:0000185" id="R_MAR09600" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -333818,7 +333795,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09600">
+            <rdf:Description rdf:about="#R_MAR09600">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/SERATB0tc"/>
@@ -333828,20 +333805,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01442e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02896e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01442e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02896e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01442c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02896c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01442c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02896c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="GlyT"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR09601" sboTerm="SBO:0000185" id="MAR09601" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09601" sboTerm="SBO:0000185" id="R_MAR09601" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -333849,7 +333826,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09601">
+            <rdf:Description rdf:about="#R_MAR09601">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/BALABETAtc"/>
@@ -333859,20 +333836,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01383e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01442e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01383e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01442e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="2" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01383c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01442c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01383c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01442c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="2" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="GlyT"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR09605" sboTerm="SBO:0000185" id="MAR09605" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09605" sboTerm="SBO:0000185" id="R_MAR09605" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -333880,7 +333857,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09605">
+            <rdf:Description rdf:about="#R_MAR09605">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_9605"/>
@@ -333890,20 +333867,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01307e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01307e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01307c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01307c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="mah"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR09606" sboTerm="SBO:0000185" id="MAR09606" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09606" sboTerm="SBO:0000185" id="R_MAR09606" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -333911,7 +333888,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09606">
+            <rdf:Description rdf:about="#R_MAR09606">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/GLYSNAT5tc"/>
@@ -333921,20 +333898,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01986e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01986c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="mah"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR09607" sboTerm="SBO:0000185" id="MAR09607" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09607" sboTerm="SBO:0000185" id="R_MAR09607" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -333942,7 +333919,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09607">
+            <rdf:Description rdf:about="#R_MAR09607">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_9607"/>
@@ -333952,12 +333929,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02519e" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02680e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02680e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02519c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02680c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02680c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -333966,7 +333943,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR09608" sboTerm="SBO:0000185" id="MAR09608" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09608" sboTerm="SBO:0000185" id="R_MAR09608" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -333974,7 +333951,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09608">
+            <rdf:Description rdf:about="#R_MAR09608">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_9608"/>
@@ -333984,12 +333961,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02394e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02394e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="2" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02394c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02394c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="2" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -333998,7 +333975,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR09609" sboTerm="SBO:0000185" id="MAR09609" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09609" sboTerm="SBO:0000185" id="R_MAR09609" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -334006,7 +333983,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09609">
+            <rdf:Description rdf:about="#R_MAR09609">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_9609"/>
@@ -334016,12 +333993,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01401e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01401e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="2" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01401c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01401c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="2" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -334030,7 +334007,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR09610" sboTerm="SBO:0000185" id="MAR09610" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09610" sboTerm="SBO:0000185" id="R_MAR09610" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -334038,7 +334015,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09610">
+            <rdf:Description rdf:about="#R_MAR09610">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_9610"/>
@@ -334048,18 +334025,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02943e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02943e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02943c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02943c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Indy"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR09612" sboTerm="SBO:0000185" id="MAR09612" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09612" sboTerm="SBO:0000185" id="R_MAR09612" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -334067,7 +334044,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09612">
+            <rdf:Description rdf:about="#R_MAR09612">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_9612"/>
@@ -334077,15 +334054,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02897e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02897e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02897c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02897c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09613" sboTerm="SBO:0000185" id="MAR09613" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09613" sboTerm="SBO:0000185" id="R_MAR09613" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -334093,7 +334070,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09613">
+            <rdf:Description rdf:about="#R_MAR09613">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_9613"/>
@@ -334103,20 +334080,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00970e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01442e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM00970e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01442e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="2" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00970c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01442c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM00970c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01442c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="2" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Gat"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR09614" sboTerm="SBO:0000185" id="MAR09614" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09614" sboTerm="SBO:0000185" id="R_MAR09614" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -334124,7 +334101,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09614">
+            <rdf:Description rdf:about="#R_MAR09614">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_9614"/>
@@ -334134,18 +334111,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01736e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01736e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01736c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01736c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="DAT"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR09615" sboTerm="SBO:0000185" id="MAR09615" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09615" sboTerm="SBO:0000185" id="R_MAR09615" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -334153,7 +334130,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09615">
+            <rdf:Description rdf:about="#R_MAR09615">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_9615"/>
@@ -334163,18 +334140,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02617e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02617e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02617c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02617c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="DAT"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR09616" sboTerm="SBO:0000185" id="MAR09616" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09616" sboTerm="SBO:0000185" id="R_MAR09616" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -334182,7 +334159,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09616">
+            <rdf:Description rdf:about="#R_MAR09616">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/GLYB0AT3tc"/>
@@ -334192,20 +334169,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01442e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01986e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01442e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01442c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01986c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01442c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="GlyT"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR09617" sboTerm="SBO:0000185" id="MAR09617" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09617" sboTerm="SBO:0000185" id="R_MAR09617" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -334213,7 +334190,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09617">
+            <rdf:Description rdf:about="#R_MAR09617">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_9617"/>
@@ -334223,14 +334200,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01442e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02770e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01442e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02770e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01442c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02770c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01442c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02770c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -334244,7 +334221,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR09618" sboTerm="SBO:0000185" id="MAR09618" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09618" sboTerm="SBO:0000185" id="R_MAR09618" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -334252,7 +334229,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09618">
+            <rdf:Description rdf:about="#R_MAR09618">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/1MNCAMt"/>
@@ -334262,16 +334239,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00536c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00536c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00536e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00536e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG6126"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR09620" sboTerm="SBO:0000185" id="MAR09620" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09620" sboTerm="SBO:0000185" id="R_MAR09620" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -334279,7 +334256,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09620">
+            <rdf:Description rdf:about="#R_MAR09620">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_9620"/>
@@ -334289,20 +334266,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01442e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01513e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01442e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01513e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01442c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01513c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01442c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01513c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="ChT"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR09621" sboTerm="SBO:0000185" id="MAR09621" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09621" sboTerm="SBO:0000185" id="R_MAR09621" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -334310,7 +334287,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09621">
+            <rdf:Description rdf:about="#R_MAR09621">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_9621"/>
@@ -334320,18 +334297,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02952e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02952e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02952c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02952c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG11655"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR09622" sboTerm="SBO:0000185" id="MAR09622" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09622" sboTerm="SBO:0000185" id="R_MAR09622" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -334339,7 +334316,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09622">
+            <rdf:Description rdf:about="#R_MAR09622">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_9622"/>
@@ -334349,18 +334326,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02403c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03120e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02403c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03120e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02403e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03120c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02403e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03120c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG8654"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR09623" sboTerm="SBO:0000185" id="MAR09623" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09623" sboTerm="SBO:0000185" id="R_MAR09623" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -334368,7 +334345,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09623">
+            <rdf:Description rdf:about="#R_MAR09623">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_9623"/>
@@ -334378,12 +334355,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01306c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01659e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01306c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01659e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01306e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01659c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01306e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01659c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -334404,7 +334381,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR09624" sboTerm="SBO:0000185" id="MAR09624" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09624" sboTerm="SBO:0000185" id="R_MAR09624" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -334412,7 +334389,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09624">
+            <rdf:Description rdf:about="#R_MAR09624">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_9624"/>
@@ -334422,12 +334399,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01306c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01789e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01306c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01789e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01306e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01789c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01306e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01789c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -334448,7 +334425,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR09635" sboTerm="SBO:0000185" id="MAR09635" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09635" sboTerm="SBO:0000185" id="R_MAR09635" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -334456,7 +334433,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09635">
+            <rdf:Description rdf:about="#R_MAR09635">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_9635"/>
@@ -334466,13 +334443,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02022c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02022c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02022e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02022e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09636" sboTerm="SBO:0000185" id="MAR09636" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09636" sboTerm="SBO:0000185" id="R_MAR09636" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -334480,7 +334457,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09636">
+            <rdf:Description rdf:about="#R_MAR09636">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/IDOURte"/>
@@ -334490,13 +334467,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02384c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02384c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02384e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02384e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09637" sboTerm="SBO:0000185" id="MAR09637" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09637" sboTerm="SBO:0000185" id="R_MAR09637" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -334504,7 +334481,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09637">
+            <rdf:Description rdf:about="#R_MAR09637">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_9637"/>
@@ -334514,13 +334491,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01098c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01098c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01098e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01098e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09638" sboTerm="SBO:0000185" id="MAR09638" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09638" sboTerm="SBO:0000185" id="R_MAR09638" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -334528,7 +334505,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09638">
+            <rdf:Description rdf:about="#R_MAR09638">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_9638"/>
@@ -334538,13 +334515,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00969c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00969c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00969e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00969e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09639" sboTerm="SBO:0000185" id="MAR09639" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09639" sboTerm="SBO:0000185" id="R_MAR09639" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -334552,7 +334529,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09639">
+            <rdf:Description rdf:about="#R_MAR09639">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_9639"/>
@@ -334562,13 +334539,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01315c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01315c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01315e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01315e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09640" sboTerm="SBO:0000185" id="MAR09640" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09640" sboTerm="SBO:0000185" id="R_MAR09640" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -334576,7 +334553,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09640">
+            <rdf:Description rdf:about="#R_MAR09640">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_9640"/>
@@ -334586,13 +334563,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02328c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02328c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02328e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02328e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09641" sboTerm="SBO:0000185" id="MAR09641" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09641" sboTerm="SBO:0000185" id="R_MAR09641" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -334600,7 +334577,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09641">
+            <rdf:Description rdf:about="#R_MAR09641">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/SPHGNSte"/>
@@ -334610,13 +334587,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02929c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02929c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02929e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02929e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09642" sboTerm="SBO:0000185" id="MAR09642" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09642" sboTerm="SBO:0000185" id="R_MAR09642" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -334624,7 +334601,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09642">
+            <rdf:Description rdf:about="#R_MAR09642">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_9642"/>
@@ -334634,13 +334611,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01289c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01289c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01289e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01289e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09643" sboTerm="SBO:0000185" id="MAR09643" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09643" sboTerm="SBO:0000185" id="R_MAR09643" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -334648,7 +334625,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09643">
+            <rdf:Description rdf:about="#R_MAR09643">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_9643"/>
@@ -334658,13 +334635,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01874c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01874c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01874e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01874e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09644" sboTerm="SBO:0000185" id="MAR09644" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09644" sboTerm="SBO:0000185" id="R_MAR09644" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -334672,7 +334649,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09644">
+            <rdf:Description rdf:about="#R_MAR09644">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_9644"/>
@@ -334682,13 +334659,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01881c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01881c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01881e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01881e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09645" sboTerm="SBO:0000185" id="MAR09645" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09645" sboTerm="SBO:0000185" id="R_MAR09645" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -334696,7 +334673,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09645">
+            <rdf:Description rdf:about="#R_MAR09645">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_9645"/>
@@ -334706,13 +334683,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01883c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01883c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01883e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01883e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09646" sboTerm="SBO:0000185" id="MAR09646" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09646" sboTerm="SBO:0000185" id="R_MAR09646" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -334720,7 +334697,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09646">
+            <rdf:Description rdf:about="#R_MAR09646">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_9646"/>
@@ -334731,13 +334708,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01884c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01884c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01884e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01884e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09647" sboTerm="SBO:0000185" id="MAR09647" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09647" sboTerm="SBO:0000185" id="R_MAR09647" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -334745,7 +334722,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09647">
+            <rdf:Description rdf:about="#R_MAR09647">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_9647"/>
@@ -334755,13 +334732,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03131c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03131c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03131e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03131e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09648" sboTerm="SBO:0000185" id="MAR09648" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09648" sboTerm="SBO:0000185" id="R_MAR09648" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -334769,7 +334746,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09648">
+            <rdf:Description rdf:about="#R_MAR09648">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_9648"/>
@@ -334779,13 +334756,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02516c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02516c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02516e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02516e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09649" sboTerm="SBO:0000185" id="MAR09649" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09649" sboTerm="SBO:0000185" id="R_MAR09649" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -334793,7 +334770,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09649">
+            <rdf:Description rdf:about="#R_MAR09649">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/C05769te2"/>
@@ -334803,13 +334780,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01603c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01603c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01603e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01603e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09650" sboTerm="SBO:0000185" id="MAR09650" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09650" sboTerm="SBO:0000185" id="R_MAR09650" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -334817,7 +334794,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09650">
+            <rdf:Description rdf:about="#R_MAR09650">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/C05770te3"/>
@@ -334827,13 +334804,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01604c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01604c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01604e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01604e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09651" sboTerm="SBO:0000185" id="MAR09651" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09651" sboTerm="SBO:0000185" id="R_MAR09651" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -334841,7 +334818,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09651">
+            <rdf:Description rdf:about="#R_MAR09651">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_9651"/>
@@ -334851,13 +334828,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01887c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01887c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01887e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01887e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09652" sboTerm="SBO:0000185" id="MAR09652" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09652" sboTerm="SBO:0000185" id="R_MAR09652" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -334865,7 +334842,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09652">
+            <rdf:Description rdf:about="#R_MAR09652">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_9652"/>
@@ -334875,13 +334852,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02137c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02137c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02137e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02137e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09653" sboTerm="SBO:0000185" id="MAR09653" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09653" sboTerm="SBO:0000185" id="R_MAR09653" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -334889,7 +334866,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09653">
+            <rdf:Description rdf:about="#R_MAR09653">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_9653"/>
@@ -334899,13 +334876,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01687c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01687c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01687e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01687e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09654" sboTerm="SBO:0000185" id="MAR09654" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09654" sboTerm="SBO:0000185" id="R_MAR09654" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -334913,7 +334890,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09654">
+            <rdf:Description rdf:about="#R_MAR09654">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_9654"/>
@@ -334923,13 +334900,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01665c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01665c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01665e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01665e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09655" sboTerm="SBO:0000185" id="MAR09655" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09655" sboTerm="SBO:0000185" id="R_MAR09655" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -334937,7 +334914,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09655">
+            <rdf:Description rdf:about="#R_MAR09655">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/GNCORE2te"/>
@@ -334947,13 +334924,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01955c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01955c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01955e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01955e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09656" sboTerm="SBO:0000185" id="MAR09656" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09656" sboTerm="SBO:0000185" id="R_MAR09656" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -334961,7 +334938,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09656">
+            <rdf:Description rdf:about="#R_MAR09656">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_9656"/>
@@ -334971,13 +334948,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01006c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01006c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01006e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01006e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09657" sboTerm="SBO:0000185" id="MAR09657" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09657" sboTerm="SBO:0000185" id="R_MAR09657" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -334985,7 +334962,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09657">
+            <rdf:Description rdf:about="#R_MAR09657">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_9657"/>
@@ -334995,13 +334972,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00771c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00771c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00771e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00771e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09658" sboTerm="SBO:0000185" id="MAR09658" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09658" sboTerm="SBO:0000185" id="R_MAR09658" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -335009,7 +334986,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09658">
+            <rdf:Description rdf:about="#R_MAR09658">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_9658"/>
@@ -335019,13 +334996,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02434c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02434c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02434e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02434e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09659" sboTerm="SBO:0000185" id="MAR09659" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09659" sboTerm="SBO:0000185" id="R_MAR09659" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -335033,7 +335010,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09659">
+            <rdf:Description rdf:about="#R_MAR09659">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_9659"/>
@@ -335043,13 +335020,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02458c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02458c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02458e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02458e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09660" sboTerm="SBO:0000185" id="MAR09660" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09660" sboTerm="SBO:0000185" id="R_MAR09660" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -335057,7 +335034,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09660">
+            <rdf:Description rdf:about="#R_MAR09660">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_9660"/>
@@ -335067,13 +335044,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01610c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01610c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01610e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01610e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09661" sboTerm="SBO:0000185" id="MAR09661" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09661" sboTerm="SBO:0000185" id="R_MAR09661" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -335081,7 +335058,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09661">
+            <rdf:Description rdf:about="#R_MAR09661">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_9661"/>
@@ -335091,13 +335068,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01612c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01612c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01612e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01612e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09662" sboTerm="SBO:0000185" id="MAR09662" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09662" sboTerm="SBO:0000185" id="R_MAR09662" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -335105,7 +335082,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09662">
+            <rdf:Description rdf:about="#R_MAR09662">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_9662"/>
@@ -335115,13 +335092,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01613c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01613c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01613e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01613e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09663" sboTerm="SBO:0000185" id="MAR09663" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09663" sboTerm="SBO:0000185" id="R_MAR09663" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -335129,7 +335106,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09663">
+            <rdf:Description rdf:about="#R_MAR09663">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_9663"/>
@@ -335139,13 +335116,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02462c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02462c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02462e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02462e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09720" sboTerm="SBO:0000185" id="MAR09720" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09720" sboTerm="SBO:0000185" id="R_MAR09720" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -335153,7 +335130,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09720">
+            <rdf:Description rdf:about="#R_MAR09720">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_9720"/>
@@ -335163,13 +335140,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01730c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01730c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01730e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01730e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09728" sboTerm="SBO:0000185" id="MAR09728" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09728" sboTerm="SBO:0000185" id="R_MAR09728" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -335177,7 +335154,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09728">
+            <rdf:Description rdf:about="#R_MAR09728">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_9728"/>
@@ -335187,13 +335164,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03161c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03161c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03161e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03161e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09731" sboTerm="SBO:0000185" id="MAR09731" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09731" sboTerm="SBO:0000185" id="R_MAR09731" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -335201,7 +335178,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09731">
+            <rdf:Description rdf:about="#R_MAR09731">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_9731"/>
@@ -335211,13 +335188,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02001c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02001c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02001e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02001e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09737" sboTerm="SBO:0000185" id="MAR09737" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09737" sboTerm="SBO:0000185" id="R_MAR09737" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -335225,7 +335202,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09737">
+            <rdf:Description rdf:about="#R_MAR09737">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/ASPte"/>
@@ -335235,13 +335212,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01370c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01370c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01370e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01370e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08071" sboTerm="SBO:0000185" id="MAR08071" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08071" sboTerm="SBO:0000185" id="R_MAR08071" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -335249,7 +335226,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08071">
+            <rdf:Description rdf:about="#R_MAR08071">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/SLDt"/>
@@ -335261,13 +335238,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00179c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00179c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00179e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00179e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR04312" sboTerm="SBO:0000185" id="MAR04312" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04312" sboTerm="SBO:0000185" id="R_MAR04312" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -335275,7 +335252,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04312">
+            <rdf:Description rdf:about="#R_MAR04312">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/SBT_Dtde"/>
@@ -335286,13 +335263,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01682c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01682c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01682e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01682e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08428" sboTerm="SBO:0000185" id="MAR08428" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08428" sboTerm="SBO:0000185" id="R_MAR08428" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -335300,7 +335277,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08428">
+            <rdf:Description rdf:about="#R_MAR08428">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CRMPte"/>
@@ -335312,13 +335289,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01619c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01619c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01619m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01619m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08430" sboTerm="SBO:0000185" id="MAR08430" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08430" sboTerm="SBO:0000185" id="R_MAR08430" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -335326,7 +335303,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08430">
+            <rdf:Description rdf:about="#R_MAR08430">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PCREATtmdiffir"/>
@@ -335338,13 +335315,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01620m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01620m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01620c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01620c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08022" sboTerm="SBO:0000185" id="MAR08022" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08022" sboTerm="SBO:0000185" id="R_MAR08022" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -335352,7 +335329,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08022">
+            <rdf:Description rdf:about="#R_MAR08022">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/2AMADPTm"/>
@@ -335364,18 +335341,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01306c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02322m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01306c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02322m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01306m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02322c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01306m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02322c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG5254"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08070" sboTerm="SBO:0000185" id="MAR08070" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08070" sboTerm="SBO:0000185" id="R_MAR08070" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -335383,7 +335360,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08070">
+            <rdf:Description rdf:about="#R_MAR08070">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/SLDtm"/>
@@ -335393,13 +335370,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00179m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00179m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00179c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00179c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09015" sboTerm="SBO:0000185" id="MAR09015" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09015" sboTerm="SBO:0000185" id="R_MAR09015" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -335408,7 +335385,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09015">
+            <rdf:Description rdf:about="#R_MAR09015">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/AMETtd"/>
@@ -335418,16 +335395,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02877c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02877c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02877m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02877m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG4743"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR09019" sboTerm="SBO:0000185" id="MAR09019" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09019" sboTerm="SBO:0000185" id="R_MAR09019" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -335435,7 +335412,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09019">
+            <rdf:Description rdf:about="#R_MAR09019">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_9019"/>
@@ -335445,13 +335422,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01424c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01424c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01424m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01424m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09020" sboTerm="SBO:0000185" id="MAR09020" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09020" sboTerm="SBO:0000185" id="R_MAR09020" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -335460,7 +335437,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09020">
+            <rdf:Description rdf:about="#R_MAR09020">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/FADtm"/>
@@ -335470,16 +335447,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01802c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01802c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01802m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01802m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG8026"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00157" sboTerm="SBO:0000185" id="MAR00157" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00157" sboTerm="SBO:0000185" id="R_MAR00157" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -335487,7 +335464,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00157">
+            <rdf:Description rdf:about="#R_MAR00157">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_0157"/>
@@ -335497,13 +335474,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01412c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01412c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01412m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01412m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR00158" sboTerm="SBO:0000185" id="MAR00158" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00158" sboTerm="SBO:0000185" id="R_MAR00158" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -335512,7 +335489,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00158">
+            <rdf:Description rdf:about="#R_MAR00158">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105470"/>
@@ -335523,15 +335500,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01412m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01412m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01412c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01412c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR00166" sboTerm="SBO:0000185" id="MAR00166" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00166" sboTerm="SBO:0000185" id="R_MAR00166" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -335539,7 +335516,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00166">
+            <rdf:Description rdf:about="#R_MAR00166">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_0166"/>
@@ -335549,13 +335526,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02694c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02694c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02694m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02694m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR00169" sboTerm="SBO:0000185" id="MAR00169" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00169" sboTerm="SBO:0000185" id="R_MAR00169" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -335563,7 +335540,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00169">
+            <rdf:Description rdf:about="#R_MAR00169">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HEXCOAACBP"/>
@@ -335573,16 +335550,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02122c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02122c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02122m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02122m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Acbp1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00172" sboTerm="SBO:0000185" id="MAR00172" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00172" sboTerm="SBO:0000185" id="R_MAR00172" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -335590,7 +335567,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00172">
+            <rdf:Description rdf:about="#R_MAR00172">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_0172"/>
@@ -335600,13 +335577,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02107c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02107c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02107m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02107m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR00175" sboTerm="SBO:0000185" id="MAR00175" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00175" sboTerm="SBO:0000185" id="R_MAR00175" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -335614,7 +335591,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00175">
+            <rdf:Description rdf:about="#R_MAR00175">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/OCCOAtm"/>
@@ -335624,13 +335601,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02644c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02644c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02644m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02644m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR00178" sboTerm="SBO:0000185" id="MAR00178" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00178" sboTerm="SBO:0000185" id="R_MAR00178" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -335638,7 +335615,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00178">
+            <rdf:Description rdf:about="#R_MAR00178">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_0178"/>
@@ -335648,13 +335625,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02616c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02616c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02616m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02616m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR00182" sboTerm="SBO:0000185" id="MAR00182" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00182" sboTerm="SBO:0000185" id="R_MAR00182" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -335662,7 +335639,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00182">
+            <rdf:Description rdf:about="#R_MAR00182">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_0182"/>
@@ -335672,13 +335649,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01650c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01650c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01650m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01650m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR00185" sboTerm="SBO:0000185" id="MAR00185" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00185" sboTerm="SBO:0000185" id="R_MAR00185" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -335686,7 +335663,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00185">
+            <rdf:Description rdf:about="#R_MAR00185">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_0185"/>
@@ -335696,13 +335673,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03116c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03116c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03116m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03116m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR00446" sboTerm="SBO:0000185" id="MAR00446" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00446" sboTerm="SBO:0000185" id="R_MAR00446" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -335711,7 +335688,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00446">
+            <rdf:Description rdf:about="#R_MAR00446">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GLYCtm"/>
@@ -335725,13 +335702,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01983c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01983c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01983m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01983m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR00578" sboTerm="SBO:0000185" id="MAR00578" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00578" sboTerm="SBO:0000185" id="R_MAR00578" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -335740,7 +335717,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00578">
+            <rdf:Description rdf:about="#R_MAR00578">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_0578"/>
@@ -335750,13 +335727,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM10007c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM10007c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM10007m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM10007m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR00587" sboTerm="SBO:0000185" id="MAR00587" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00587" sboTerm="SBO:0000185" id="R_MAR00587" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -335764,7 +335741,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00587">
+            <rdf:Description rdf:about="#R_MAR00587">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_0587"/>
@@ -335774,13 +335751,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01589c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01589c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01589m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01589m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR00962" sboTerm="SBO:0000185" id="MAR00962" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00962" sboTerm="SBO:0000185" id="R_MAR00962" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -335788,7 +335765,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00962">
+            <rdf:Description rdf:about="#R_MAR00962">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_0962"/>
@@ -335798,13 +335775,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01042c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01042c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01042m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01042m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01145" sboTerm="SBO:0000185" id="MAR01145" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01145" sboTerm="SBO:0000185" id="R_MAR01145" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -335812,7 +335789,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01145">
+            <rdf:Description rdf:about="#R_MAR01145">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_1145"/>
@@ -335822,13 +335799,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01124c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01124c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01124m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01124m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01173" sboTerm="SBO:0000185" id="MAR01173" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01173" sboTerm="SBO:0000185" id="R_MAR01173" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -335836,7 +335813,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01173">
+            <rdf:Description rdf:about="#R_MAR01173">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_1173"/>
@@ -335846,13 +335823,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00835c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00835c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00835m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00835m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01187" sboTerm="SBO:0000185" id="MAR01187" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01187" sboTerm="SBO:0000185" id="R_MAR01187" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -335860,7 +335837,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01187">
+            <rdf:Description rdf:about="#R_MAR01187">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_1187"/>
@@ -335870,13 +335847,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01118c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01118c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01118m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01118m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01215" sboTerm="SBO:0000185" id="MAR01215" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01215" sboTerm="SBO:0000185" id="R_MAR01215" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -335884,7 +335861,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01215">
+            <rdf:Description rdf:about="#R_MAR01215">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_1215"/>
@@ -335894,13 +335871,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00837c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00837c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00837m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00837m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01243" sboTerm="SBO:0000185" id="MAR01243" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01243" sboTerm="SBO:0000185" id="R_MAR01243" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -335908,7 +335885,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01243">
+            <rdf:Description rdf:about="#R_MAR01243">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_1243"/>
@@ -335918,13 +335895,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00583c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00583c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00583m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00583m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01267" sboTerm="SBO:0000185" id="MAR01267" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01267" sboTerm="SBO:0000185" id="R_MAR01267" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -335932,7 +335909,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01267">
+            <rdf:Description rdf:about="#R_MAR01267">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_1267"/>
@@ -335942,13 +335919,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00258c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00258c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00258m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00258m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01284" sboTerm="SBO:0000185" id="MAR01284" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01284" sboTerm="SBO:0000185" id="R_MAR01284" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -335956,7 +335933,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01284">
+            <rdf:Description rdf:about="#R_MAR01284">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_1284"/>
@@ -335966,13 +335943,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00252c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00252c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00252m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00252m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01572" sboTerm="SBO:0000185" id="MAR01572" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01572" sboTerm="SBO:0000185" id="R_MAR01572" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -335980,7 +335957,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01572">
+            <rdf:Description rdf:about="#R_MAR01572">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/HMGCOAtm"/>
@@ -335992,13 +335969,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02131c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02131c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02131m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02131m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01602" sboTerm="SBO:0000185" id="MAR01602" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01602" sboTerm="SBO:0000185" id="R_MAR01602" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -336007,7 +335984,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01602">
+            <rdf:Description rdf:about="#R_MAR01602">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/XOLTRIOLtm"/>
@@ -336021,13 +335998,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01078c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01078c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01078m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01078m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01915" sboTerm="SBO:0000185" id="MAR01915" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01915" sboTerm="SBO:0000185" id="R_MAR01915" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -336035,7 +336012,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01915">
+            <rdf:Description rdf:about="#R_MAR01915">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/CHSTEROLt3"/>
@@ -336047,13 +336024,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01450c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01450m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01925" sboTerm="SBO:0000185" id="MAR01925" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01925" sboTerm="SBO:0000185" id="R_MAR01925" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -336061,7 +336038,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01925">
+            <rdf:Description rdf:about="#R_MAR01925">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_1925"/>
@@ -336071,13 +336048,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01511c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01511c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01511m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01511m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01930" sboTerm="SBO:0000185" id="MAR01930" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01930" sboTerm="SBO:0000185" id="R_MAR01930" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -336085,7 +336062,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01930">
+            <rdf:Description rdf:about="#R_MAR01930">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR125315"/>
@@ -336097,13 +336074,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02182m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02182m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02182c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02182c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01936" sboTerm="SBO:0000185" id="MAR01936" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01936" sboTerm="SBO:0000185" id="R_MAR01936" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -336111,7 +336088,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01936">
+            <rdf:Description rdf:about="#R_MAR01936">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR103167"/>
@@ -336123,13 +336100,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02763c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02763c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02763m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02763m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01994" sboTerm="SBO:0000185" id="MAR01994" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01994" sboTerm="SBO:0000185" id="R_MAR01994" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -336138,7 +336115,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01994">
+            <rdf:Description rdf:about="#R_MAR01994">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR125313"/>
@@ -336150,13 +336127,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00295c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00295c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00295m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00295m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01997" sboTerm="SBO:0000185" id="MAR01997" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01997" sboTerm="SBO:0000185" id="R_MAR01997" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -336164,7 +336141,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01997">
+            <rdf:Description rdf:about="#R_MAR01997">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR125314"/>
@@ -336176,13 +336153,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01615c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01615c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01615m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01615m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR02008" sboTerm="SBO:0000185" id="MAR02008" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02008" sboTerm="SBO:0000185" id="R_MAR02008" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -336191,7 +336168,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02008">
+            <rdf:Description rdf:about="#R_MAR02008">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR125312"/>
@@ -336203,13 +336180,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00294c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00294c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00294m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00294m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR02012" sboTerm="SBO:0000185" id="MAR02012" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02012" sboTerm="SBO:0000185" id="R_MAR02012" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -336217,7 +336194,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02012">
+            <rdf:Description rdf:about="#R_MAR02012">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/ALDSTRNtm"/>
@@ -336227,13 +336204,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01309m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01309m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01309c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01309c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR02065" sboTerm="SBO:0000185" id="MAR02065" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02065" sboTerm="SBO:0000185" id="R_MAR02065" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -336241,7 +336218,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02065">
+            <rdf:Description rdf:about="#R_MAR02065">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_2065"/>
@@ -336251,13 +336228,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01791c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01791c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01791m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01791m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR02080" sboTerm="SBO:0000185" id="MAR02080" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02080" sboTerm="SBO:0000185" id="R_MAR02080" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -336265,7 +336242,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02080">
+            <rdf:Description rdf:about="#R_MAR02080">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_2080"/>
@@ -336275,13 +336252,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01793c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01793c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01793m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01793m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR02094" sboTerm="SBO:0000185" id="MAR02094" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02094" sboTerm="SBO:0000185" id="R_MAR02094" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -336289,7 +336266,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02094">
+            <rdf:Description rdf:about="#R_MAR02094">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_2094"/>
@@ -336299,15 +336276,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00412c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039i" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00412c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039i" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00412m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00412m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR02105" sboTerm="SBO:0000185" id="MAR02105" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02105" sboTerm="SBO:0000185" id="R_MAR02105" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -336315,7 +336292,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02105">
+            <rdf:Description rdf:about="#R_MAR02105">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_2105"/>
@@ -336325,13 +336302,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00410c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00410c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00410m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00410m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR02116" sboTerm="SBO:0000185" id="MAR02116" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02116" sboTerm="SBO:0000185" id="R_MAR02116" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -336339,7 +336316,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02116">
+            <rdf:Description rdf:about="#R_MAR02116">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_2116"/>
@@ -336349,18 +336326,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03142c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039i" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03142c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039i" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03142m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03142m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="kay"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02127" sboTerm="SBO:0000185" id="MAR02127" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02127" sboTerm="SBO:0000185" id="R_MAR02127" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -336368,7 +336345,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02127">
+            <rdf:Description rdf:about="#R_MAR02127">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_2127"/>
@@ -336378,13 +336355,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01417c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01417c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01417m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01417m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR02141" sboTerm="SBO:0000176" id="MAR02141" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02141" sboTerm="SBO:0000176" id="R_MAR02141" name="calcitriol,adrenodoxin:oxygen oxidoreductase (24-hydroxylating)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -336392,7 +336369,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02141">
+            <rdf:Description rdf:about="#R_MAR02141">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.13.126"/>
@@ -336404,15 +336381,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01417m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01417m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01416m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01416m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -336421,7 +336398,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02590" sboTerm="SBO:0000185" id="MAR02590" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02590" sboTerm="SBO:0000185" id="R_MAR02590" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -336430,7 +336407,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02590">
+            <rdf:Description rdf:about="#R_MAR02590">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ACRNtm"/>
@@ -336443,16 +336420,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02348m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="colt"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03746" sboTerm="SBO:0000185" id="MAR03746" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03746" sboTerm="SBO:0000185" id="R_MAR03746" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -336460,7 +336437,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03746">
+            <rdf:Description rdf:about="#R_MAR03746">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_3746"/>
@@ -336470,13 +336447,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00824c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00824c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00824m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00824m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03762" sboTerm="SBO:0000185" id="MAR03762" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03762" sboTerm="SBO:0000185" id="R_MAR03762" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -336484,7 +336461,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03762">
+            <rdf:Description rdf:about="#R_MAR03762">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/2MOPtm"/>
@@ -336495,13 +336472,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00661c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00661c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00661m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00661m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03789" sboTerm="SBO:0000185" id="MAR03789" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03789" sboTerm="SBO:0000185" id="R_MAR03789" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -336509,7 +336486,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03789">
+            <rdf:Description rdf:about="#R_MAR03789">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/MMALtm"/>
@@ -336520,13 +336497,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02479c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02479c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02479m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02479m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03818" sboTerm="SBO:0000185" id="MAR03818" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03818" sboTerm="SBO:0000185" id="R_MAR03818" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -336534,7 +336511,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03818">
+            <rdf:Description rdf:about="#R_MAR03818">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GLU5SAtmc"/>
@@ -336545,13 +336522,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02374c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02374c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02374m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02374m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03825" sboTerm="SBO:0000185" id="MAR03825" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03825" sboTerm="SBO:0000185" id="R_MAR03825" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -336560,7 +336537,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03825">
+            <rdf:Description rdf:about="#R_MAR03825">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ASPGLUm"/>
@@ -336573,20 +336550,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01370m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01974c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039i" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01370m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01974c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039i" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01370c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01974m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01370c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01974m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="aralar1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03863" sboTerm="SBO:0000185" id="MAR03863" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03863" sboTerm="SBO:0000185" id="R_MAR03863" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -336594,7 +336571,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03863">
+            <rdf:Description rdf:about="#R_MAR03863">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/3SALAASPm"/>
@@ -336607,18 +336584,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00918c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01370m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00918c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01370m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00918m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01370c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00918m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01370c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="aralar1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03864" sboTerm="SBO:0000185" id="MAR03864" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03864" sboTerm="SBO:0000185" id="R_MAR03864" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -336626,7 +336603,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03864">
+            <rdf:Description rdf:about="#R_MAR03864">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/HMR_3864"/>
@@ -336638,20 +336615,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00918m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01974c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039i" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00918m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01974c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039i" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00918c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01974m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00918c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01974m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="aralar1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03921" sboTerm="SBO:0000185" id="MAR03921" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03921" sboTerm="SBO:0000185" id="R_MAR03921" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -336659,7 +336636,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03921">
+            <rdf:Description rdf:about="#R_MAR03921">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_3921"/>
@@ -336669,13 +336646,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02349c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02349c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02349m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02349m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03946" sboTerm="SBO:0000185" id="MAR03946" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03946" sboTerm="SBO:0000185" id="R_MAR03946" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -336683,7 +336660,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03946">
+            <rdf:Description rdf:about="#R_MAR03946">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/H2O2tm"/>
@@ -336695,13 +336672,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02041c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02041m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03949" sboTerm="SBO:0000185" id="MAR03949" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03949" sboTerm="SBO:0000185" id="R_MAR03949" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -336709,7 +336686,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03949">
+            <rdf:Description rdf:about="#R_MAR03949">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/MALOAAtm"/>
@@ -336721,15 +336698,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02439m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02633c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02439m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02633c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02439c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02633m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02439c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02633m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03950" sboTerm="SBO:0000185" id="MAR03950" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03950" sboTerm="SBO:0000185" id="R_MAR03950" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -336737,7 +336714,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03950">
+            <rdf:Description rdf:about="#R_MAR03950">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/MLTHFtm"/>
@@ -336749,13 +336726,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01045c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01045c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01045m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01045m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03952" sboTerm="SBO:0000185" id="MAR03952" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03952" sboTerm="SBO:0000185" id="R_MAR03952" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -336763,7 +336740,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03952">
+            <rdf:Description rdf:about="#R_MAR03952">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/THFtm"/>
@@ -336775,13 +336752,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02980c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02980c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02980m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02980m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03954" sboTerm="SBO:0000185" id="MAR03954" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03954" sboTerm="SBO:0000185" id="R_MAR03954" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -336789,7 +336766,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03954">
+            <rdf:Description rdf:about="#R_MAR03954">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/AACTtm"/>
@@ -336801,13 +336778,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01332m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01332m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01332c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01332c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03971" sboTerm="SBO:0000185" id="MAR03971" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03971" sboTerm="SBO:0000185" id="R_MAR03971" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -336815,7 +336792,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03971">
+            <rdf:Description rdf:about="#R_MAR03971">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FUMtm"/>
@@ -336827,18 +336804,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01862c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01862c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01862m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01862m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Dic1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04184" sboTerm="SBO:0000176" id="MAR04184" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04184" sboTerm="SBO:0000176" id="R_MAR04184" name="sulfite:ferricytochrome-c oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -336847,7 +336824,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04184">
+            <rdf:Description rdf:about="#R_MAR04184">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.8.2.1"/>
@@ -336860,20 +336837,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01824m" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02949c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01824m" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02949c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01826m" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02946c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01826m" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02946c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="shop"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04205" sboTerm="SBO:0000185" id="MAR04205" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04205" sboTerm="SBO:0000185" id="R_MAR04205" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -336881,7 +336858,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04205">
+            <rdf:Description rdf:about="#R_MAR04205">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_4205"/>
@@ -336891,15 +336868,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02984c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039i" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02984c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039i" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02984m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02984m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR04237" sboTerm="SBO:0000185" id="MAR04237" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04237" sboTerm="SBO:0000185" id="R_MAR04237" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -336908,7 +336885,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04237">
+            <rdf:Description rdf:about="#R_MAR04237">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/2OXOADPTm"/>
@@ -336921,18 +336898,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00670c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01306m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00670c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01306m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00670m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01306c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00670m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01306c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG5254"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04266" sboTerm="SBO:0000185" id="MAR04266" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04266" sboTerm="SBO:0000185" id="R_MAR04266" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -336940,7 +336917,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04266">
+            <rdf:Description rdf:about="#R_MAR04266">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_4266"/>
@@ -336950,13 +336927,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02581c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02581c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02581m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02581m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR04367" sboTerm="SBO:0000185" id="MAR04367" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04367" sboTerm="SBO:0000185" id="R_MAR04367" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -336965,7 +336942,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04367">
+            <rdf:Description rdf:about="#R_MAR04367">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR94974"/>
@@ -336976,13 +336953,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00913c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00913c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00913m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00913m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR04684" sboTerm="SBO:0000185" id="MAR04684" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04684" sboTerm="SBO:0000185" id="R_MAR04684" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -336990,7 +336967,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04684">
+            <rdf:Description rdf:about="#R_MAR04684">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_4684"/>
@@ -337000,15 +336977,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02719c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039i" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02719c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039i" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02719m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02719m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR04692" sboTerm="SBO:0000185" id="MAR04692" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04692" sboTerm="SBO:0000185" id="R_MAR04692" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -337016,7 +336993,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04692">
+            <rdf:Description rdf:about="#R_MAR04692">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/4ABUTtm"/>
@@ -337028,13 +337005,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00970c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00970c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00970m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00970m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR04720" sboTerm="SBO:0000185" id="MAR04720" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04720" sboTerm="SBO:0000185" id="R_MAR04720" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -337042,7 +337019,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04720">
+            <rdf:Description rdf:about="#R_MAR04720">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105410"/>
@@ -337053,13 +337030,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02679c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02679c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02679m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02679m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR04729" sboTerm="SBO:0000185" id="MAR04729" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04729" sboTerm="SBO:0000185" id="R_MAR04729" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -337067,7 +337044,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04729">
+            <rdf:Description rdf:about="#R_MAR04729">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105422"/>
@@ -337078,13 +337055,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02623c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02623c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02623m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02623m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR04738" sboTerm="SBO:0000185" id="MAR04738" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04738" sboTerm="SBO:0000185" id="R_MAR04738" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -337092,7 +337069,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04738">
+            <rdf:Description rdf:about="#R_MAR04738">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106331"/>
@@ -337103,15 +337080,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00631c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02322m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00631c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02322m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00631m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02322c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00631m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02322c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR04743" sboTerm="SBO:0000185" id="MAR04743" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04743" sboTerm="SBO:0000185" id="R_MAR04743" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -337119,7 +337096,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04743">
+            <rdf:Description rdf:about="#R_MAR04743">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/5AOPtm"/>
@@ -337133,13 +337110,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01074c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01074c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01074m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01074m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR04754" sboTerm="SBO:0000185" id="MAR04754" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04754" sboTerm="SBO:0000185" id="R_MAR04754" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -337147,7 +337124,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04754">
+            <rdf:Description rdf:about="#R_MAR04754">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PPPG9tm"/>
@@ -337160,13 +337137,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02804c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02804c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02804m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02804m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR04756" sboTerm="SBO:0000185" id="MAR04756" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04756" sboTerm="SBO:0000185" id="R_MAR04756" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -337174,7 +337151,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04756">
+            <rdf:Description rdf:about="#R_MAR04756">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/HMR_4756"/>
@@ -337185,13 +337162,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02803c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02803c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02803m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02803m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR04760" sboTerm="SBO:0000185" id="MAR04760" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04760" sboTerm="SBO:0000185" id="R_MAR04760" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -337200,7 +337177,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04760">
+            <rdf:Description rdf:about="#R_MAR04760">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PHEMEtm"/>
@@ -337213,13 +337190,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02049c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02049c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02049m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02049m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR04843" sboTerm="SBO:0000185" id="MAR04843" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04843" sboTerm="SBO:0000185" id="R_MAR04843" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -337228,7 +337205,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04843">
+            <rdf:Description rdf:about="#R_MAR04843">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105390"/>
@@ -337239,12 +337216,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01948c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02034m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01948c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02034m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01948m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02034c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01948m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02034c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -337252,7 +337229,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04850" sboTerm="SBO:0000185" id="MAR04850" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04850" sboTerm="SBO:0000185" id="R_MAR04850" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -337261,7 +337238,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04850">
+            <rdf:Description rdf:about="#R_MAR04850">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR97813"/>
@@ -337272,13 +337249,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01755m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01755m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01755c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01755c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR04851" sboTerm="SBO:0000185" id="MAR04851" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04851" sboTerm="SBO:0000185" id="R_MAR04851" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -337287,7 +337264,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04851">
+            <rdf:Description rdf:about="#R_MAR04851">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105393"/>
@@ -337299,18 +337276,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01306c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02943m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01306c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02943m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01306m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02943c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01306m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02943c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Dic1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04852" sboTerm="SBO:0000185" id="MAR04852" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04852" sboTerm="SBO:0000185" id="R_MAR04852" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -337319,7 +337296,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04852">
+            <rdf:Description rdf:about="#R_MAR04852">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/AKGMALtm"/>
@@ -337332,18 +337309,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01306c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02439m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01306c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02439m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01306m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02439c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01306m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02439c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG1907"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04854" sboTerm="SBO:0000185" id="MAR04854" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04854" sboTerm="SBO:0000185" id="R_MAR04854" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -337352,7 +337329,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04854">
+            <rdf:Description rdf:about="#R_MAR04854">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR104633"/>
@@ -337366,18 +337343,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01862c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02943m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01862c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02943m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01862m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02943c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01862m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02943c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Dic1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04855" sboTerm="SBO:0000185" id="MAR04855" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04855" sboTerm="SBO:0000185" id="R_MAR04855" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -337386,7 +337363,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04855">
+            <rdf:Description rdf:about="#R_MAR04855">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105394"/>
@@ -337398,18 +337375,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01862c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02439m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01862c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02439m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01862m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02439c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01862m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02439c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG1907"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04862" sboTerm="SBO:0000185" id="MAR04862" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04862" sboTerm="SBO:0000185" id="R_MAR04862" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -337418,7 +337395,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04862">
+            <rdf:Description rdf:about="#R_MAR04862">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/SUCCtm"/>
@@ -337431,18 +337408,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02751m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02943c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02943c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02943m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02943m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Dic1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04863" sboTerm="SBO:0000185" id="MAR04863" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04863" sboTerm="SBO:0000185" id="R_MAR04863" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -337451,7 +337428,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04863">
+            <rdf:Description rdf:about="#R_MAR04863">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105395"/>
@@ -337463,18 +337440,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02943c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02946m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02943c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02946m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02943m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02946c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02943m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02946c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Dic1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04864" sboTerm="SBO:0000185" id="MAR04864" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04864" sboTerm="SBO:0000185" id="R_MAR04864" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -337483,7 +337460,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04864">
+            <rdf:Description rdf:about="#R_MAR04864">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105396"/>
@@ -337495,18 +337472,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02943c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02949m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02943c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02949m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02943m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02949c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02943m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02949c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Dic1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04865" sboTerm="SBO:0000185" id="MAR04865" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04865" sboTerm="SBO:0000185" id="R_MAR04865" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -337515,7 +337492,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04865">
+            <rdf:Description rdf:about="#R_MAR04865">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/MALtm"/>
@@ -337528,18 +337505,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02439c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02439c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02439m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02439m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Dic1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04867" sboTerm="SBO:0000185" id="MAR04867" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04867" sboTerm="SBO:0000185" id="R_MAR04867" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -337548,7 +337525,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04867">
+            <rdf:Description rdf:about="#R_MAR04867">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/MALSO4tm"/>
@@ -337561,18 +337538,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02439c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02946m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02439c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02946m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02439m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02946c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02439m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02946c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Dic1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04868" sboTerm="SBO:0000185" id="MAR04868" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04868" sboTerm="SBO:0000185" id="R_MAR04868" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -337581,7 +337558,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04868">
+            <rdf:Description rdf:about="#R_MAR04868">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/MALSO3tm"/>
@@ -337594,18 +337571,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02439c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02949m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02439c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02949m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02439m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02949c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02439m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02949c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Dic1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04870" sboTerm="SBO:0000185" id="MAR04870" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04870" sboTerm="SBO:0000185" id="R_MAR04870" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -337614,7 +337591,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04870">
+            <rdf:Description rdf:about="#R_MAR04870">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105397"/>
@@ -337626,18 +337603,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02440c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02440c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02440m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02440m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Dic1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04871" sboTerm="SBO:0000185" id="MAR04871" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04871" sboTerm="SBO:0000185" id="R_MAR04871" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -337646,7 +337623,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04871">
+            <rdf:Description rdf:about="#R_MAR04871">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105398"/>
@@ -337658,18 +337635,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02440c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02946m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02440c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02946m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02440m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02946c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02440m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02946c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Dic1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04872" sboTerm="SBO:0000185" id="MAR04872" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04872" sboTerm="SBO:0000185" id="R_MAR04872" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -337678,7 +337655,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04872">
+            <rdf:Description rdf:about="#R_MAR04872">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105399"/>
@@ -337690,18 +337667,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02440c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02949m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02440c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02949m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02440m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02949c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02440m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02949c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Dic1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04874" sboTerm="SBO:0000185" id="MAR04874" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04874" sboTerm="SBO:0000185" id="R_MAR04874" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -337710,7 +337687,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04874">
+            <rdf:Description rdf:about="#R_MAR04874">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR101950"/>
@@ -337720,13 +337697,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02578c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02578c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02578m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02578m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR04888" sboTerm="SBO:0000185" id="MAR04888" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04888" sboTerm="SBO:0000185" id="R_MAR04888" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -337735,7 +337712,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04888">
+            <rdf:Description rdf:about="#R_MAR04888">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/H2Otm"/>
@@ -337749,16 +337726,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Eglp3"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04898" sboTerm="SBO:0000185" id="MAR04898" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04898" sboTerm="SBO:0000185" id="R_MAR04898" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -337766,7 +337743,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04898">
+            <rdf:Description rdf:about="#R_MAR04898">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/O2tm"/>
@@ -337778,13 +337755,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02630m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR04905" sboTerm="SBO:0000185" id="MAR04905" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04905" sboTerm="SBO:0000185" id="R_MAR04905" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -337793,7 +337770,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04905">
+            <rdf:Description rdf:about="#R_MAR04905">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105401"/>
@@ -337804,15 +337781,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01371m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR04914" sboTerm="SBO:0000185" id="MAR04914" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04914" sboTerm="SBO:0000185" id="R_MAR04914" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -337821,7 +337798,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04914">
+            <rdf:Description rdf:about="#R_MAR04914">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/COAtim"/>
@@ -337833,16 +337810,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="DPCoAC"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04922" sboTerm="SBO:0000185" id="MAR04922" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04922" sboTerm="SBO:0000185" id="R_MAR04922" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -337851,7 +337828,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04922">
+            <rdf:Description rdf:about="#R_MAR04922">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CO2tm"/>
@@ -337863,22 +337840,22 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01596c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01596c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01596m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01596m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR04926" sboTerm="SBO:0000185" id="MAR04926" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04926" sboTerm="SBO:0000185" id="R_MAR04926" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
-            <p>AUTHORS: PMID:12739169;PMID:18305372</p>
+            <p>AUTHORS: PMID:22628558;PMID:27317664</p>
           </body>
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04926">
+            <rdf:Description rdf:about="#R_MAR04926">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PYRt2m"/>
@@ -337890,22 +337867,24 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02819c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02819c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02819m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02819m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
-          <fbc:or>
-            <fbc:geneProductRef fbc:geneProduct="CG9396"/>
-            <fbc:geneProductRef fbc:geneProduct="CG9399"/>
+          <fbc:and>
+            <fbc:or>
+              <fbc:geneProductRef fbc:geneProduct="CG9396"/>
+              <fbc:geneProductRef fbc:geneProduct="CG9399"/>
+            </fbc:or>
             <fbc:geneProductRef fbc:geneProduct="Mpc1"/>
-          </fbc:or>
+          </fbc:and>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04940" sboTerm="SBO:0000185" id="MAR04940" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04940" sboTerm="SBO:0000185" id="R_MAR04940" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -337914,7 +337893,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04940">
+            <rdf:Description rdf:about="#R_MAR04940">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105402"/>
@@ -337926,18 +337905,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02026c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02026m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Dic1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04944" sboTerm="SBO:0000185" id="MAR04944" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04944" sboTerm="SBO:0000185" id="R_MAR04944" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -337946,7 +337925,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04944">
+            <rdf:Description rdf:about="#R_MAR04944">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FORtm"/>
@@ -337960,10 +337939,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01833c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01833c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01833m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01833m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -337972,7 +337951,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04951" sboTerm="SBO:0000185" id="MAR04951" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04951" sboTerm="SBO:0000185" id="R_MAR04951" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -337981,7 +337960,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04951">
+            <rdf:Description rdf:about="#R_MAR04951">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/UREAtm"/>
@@ -337995,10 +337974,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03121c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03121c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03121m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03121m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -338007,7 +337986,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04953" sboTerm="SBO:0000185" id="MAR04953" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04953" sboTerm="SBO:0000185" id="R_MAR04953" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -338016,7 +337995,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04953">
+            <rdf:Description rdf:about="#R_MAR04953">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/BALAtmr"/>
@@ -338028,13 +338007,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01383c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01383c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01383m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01383m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR04959" sboTerm="SBO:0000185" id="MAR04959" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04959" sboTerm="SBO:0000185" id="R_MAR04959" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -338043,7 +338022,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04959">
+            <rdf:Description rdf:about="#R_MAR04959">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR103339"/>
@@ -338054,13 +338033,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02812c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02812c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02812m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02812m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR04963" sboTerm="SBO:0000185" id="MAR04963" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04963" sboTerm="SBO:0000185" id="R_MAR04963" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -338069,7 +338048,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04963">
+            <rdf:Description rdf:about="#R_MAR04963">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105403"/>
@@ -338080,15 +338059,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01974m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02770c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01974m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02770c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01974c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02770m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01974c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02770m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR04964" sboTerm="SBO:0000185" id="MAR04964" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04964" sboTerm="SBO:0000185" id="R_MAR04964" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -338097,7 +338076,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04964">
+            <rdf:Description rdf:about="#R_MAR04964">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CITtam"/>
@@ -338110,20 +338089,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01587m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02439c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01587m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02439c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01587c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02439m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01587c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02439m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="sea"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04971" sboTerm="SBO:0000185" id="MAR04971" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04971" sboTerm="SBO:0000185" id="R_MAR04971" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -338132,7 +338111,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04971">
+            <rdf:Description rdf:about="#R_MAR04971">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CITtbm"/>
@@ -338145,18 +338124,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01587m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02696c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01587m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02696c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01587c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02696m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01587c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02696m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="sea"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04972" sboTerm="SBO:0000185" id="MAR04972" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04972" sboTerm="SBO:0000185" id="R_MAR04972" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -338165,7 +338144,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04972">
+            <rdf:Description rdf:about="#R_MAR04972">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR96755"/>
@@ -338177,18 +338156,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01587c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02183m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01587c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02183m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01587m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02183c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01587m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02183c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="sea"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04957" sboTerm="SBO:0000185" id="MAR04957" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04957" sboTerm="SBO:0000185" id="R_MAR04957" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -338196,7 +338175,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04957">
+            <rdf:Description rdf:about="#R_MAR04957">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_4957"/>
@@ -338206,13 +338185,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01587m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01587m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01587c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01587c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR04977" sboTerm="SBO:0000185" id="MAR04977" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04977" sboTerm="SBO:0000185" id="R_MAR04977" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -338221,7 +338200,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04977">
+            <rdf:Description rdf:about="#R_MAR04977">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ACACt2m"/>
@@ -338234,18 +338213,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01253c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01253c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01253m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01253m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="hrm"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04979" sboTerm="SBO:0000185" id="MAR04979" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04979" sboTerm="SBO:0000185" id="R_MAR04979" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -338254,7 +338233,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04979">
+            <rdf:Description rdf:about="#R_MAR04979">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR104853"/>
@@ -338265,13 +338244,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02997c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02997c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02997m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02997m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR04997" sboTerm="SBO:0000185" id="MAR04997" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04997" sboTerm="SBO:0000185" id="R_MAR04997" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -338280,7 +338259,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04997">
+            <rdf:Description rdf:about="#R_MAR04997">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/DGSNtm"/>
@@ -338293,16 +338272,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01669c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01669c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01669m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01669m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Ent1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04998" sboTerm="SBO:0000185" id="MAR04998" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04998" sboTerm="SBO:0000185" id="R_MAR04998" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -338310,7 +338289,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04998">
+            <rdf:Description rdf:about="#R_MAR04998">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR97322"/>
@@ -338321,13 +338300,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01686m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01686m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01686c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01686c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05006" sboTerm="SBO:0000185" id="MAR05006" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05006" sboTerm="SBO:0000185" id="R_MAR05006" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -338336,7 +338315,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05006">
+            <rdf:Description rdf:about="#R_MAR05006">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105408"/>
@@ -338347,13 +338326,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01830c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01830c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01830m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01830m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05014" sboTerm="SBO:0000185" id="MAR05014" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05014" sboTerm="SBO:0000185" id="R_MAR05014" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -338362,7 +338341,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05014">
+            <rdf:Description rdf:about="#R_MAR05014">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105411"/>
@@ -338373,13 +338352,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01705m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01705m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01705c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01705c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05015" sboTerm="SBO:0000185" id="MAR05015" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05015" sboTerm="SBO:0000185" id="R_MAR05015" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -338387,7 +338366,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05015">
+            <rdf:Description rdf:about="#R_MAR05015">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/BHBtm"/>
@@ -338398,15 +338377,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00157m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039i" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00157m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039i" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00157c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00157c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05016" sboTerm="SBO:0000185" id="MAR05016" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05016" sboTerm="SBO:0000185" id="R_MAR05016" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -338415,7 +338394,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05016">
+            <rdf:Description rdf:about="#R_MAR05016">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/BHBtm"/>
@@ -338428,18 +338407,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00157c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00157c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00157m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00157m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="hrm"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05022" sboTerm="SBO:0000185" id="MAR05022" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05022" sboTerm="SBO:0000185" id="R_MAR05022" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -338447,7 +338426,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05022">
+            <rdf:Description rdf:about="#R_MAR05022">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/NH4tm"/>
@@ -338461,16 +338440,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02579c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02579c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02579m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02579m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Rh50"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05031" sboTerm="SBO:0000185" id="MAR05031" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05031" sboTerm="SBO:0000185" id="R_MAR05031" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -338479,7 +338458,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05031">
+            <rdf:Description rdf:about="#R_MAR05031">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ADNtm"/>
@@ -338492,16 +338471,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01280c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01280c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01280m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01280m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Ent1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05033" sboTerm="SBO:0000185" id="MAR05033" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05033" sboTerm="SBO:0000185" id="R_MAR05033" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -338510,7 +338489,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05033">
+            <rdf:Description rdf:about="#R_MAR05033">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/THYMDtm"/>
@@ -338523,16 +338502,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02996c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02996c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02996m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02996m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Ent1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05036" sboTerm="SBO:0000185" id="MAR05036" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05036" sboTerm="SBO:0000185" id="R_MAR05036" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -338541,7 +338520,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05036">
+            <rdf:Description rdf:about="#R_MAR05036">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GSNtm"/>
@@ -338554,16 +338533,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02038m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02038m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02038c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02038c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Ent1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05043" sboTerm="SBO:0000185" id="MAR05043" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05043" sboTerm="SBO:0000185" id="R_MAR05043" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -338572,7 +338551,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05043">
+            <rdf:Description rdf:about="#R_MAR05043">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PIt2m"/>
@@ -338584,12 +338563,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039i" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039i" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -338598,7 +338577,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05046" sboTerm="SBO:0000185" id="MAR05046" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05046" sboTerm="SBO:0000185" id="R_MAR05046" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -338606,7 +338585,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05046">
+            <rdf:Description rdf:about="#R_MAR05046">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CHSTEROLt1"/>
@@ -338620,16 +338599,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01450l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01450m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Start1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05096" sboTerm="SBO:0000185" id="MAR05096" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05096" sboTerm="SBO:0000185" id="R_MAR05096" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -338638,7 +338617,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05096">
+            <rdf:Description rdf:about="#R_MAR05096">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ASNtm"/>
@@ -338650,13 +338629,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01369c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01369c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01369m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01369m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05099" sboTerm="SBO:0000185" id="MAR05099" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05099" sboTerm="SBO:0000185" id="R_MAR05099" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -338665,7 +338644,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05099">
+            <rdf:Description rdf:about="#R_MAR05099">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105002"/>
@@ -338676,15 +338655,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03101c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039i" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03101c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039i" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03101m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03101m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05101" sboTerm="SBO:0000185" id="MAR05101" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05101" sboTerm="SBO:0000185" id="R_MAR05101" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -338693,7 +338672,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05101">
+            <rdf:Description rdf:about="#R_MAR05101">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GLNtm"/>
@@ -338705,15 +338684,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01975c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039i" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01975c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039i" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01975m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01975m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05102" sboTerm="SBO:0000185" id="MAR05102" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05102" sboTerm="SBO:0000185" id="R_MAR05102" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -338721,7 +338700,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05102">
+            <rdf:Description rdf:about="#R_MAR05102">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GLNtm"/>
@@ -338732,15 +338711,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01975m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039i" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01975m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039i" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01975c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01975c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05105" sboTerm="SBO:0000185" id="MAR05105" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05105" sboTerm="SBO:0000185" id="R_MAR05105" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -338749,7 +338728,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05105">
+            <rdf:Description rdf:about="#R_MAR05105">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ORNt3m"/>
@@ -338761,18 +338740,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02658m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02658m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02658c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02658c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG1628"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05107" sboTerm="SBO:0000185" id="MAR05107" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05107" sboTerm="SBO:0000185" id="R_MAR05107" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -338780,7 +338759,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05107">
+            <rdf:Description rdf:about="#R_MAR05107">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ILEtmi"/>
@@ -338791,15 +338770,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02184c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039i" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02184c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039i" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02184m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02184m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05109" sboTerm="SBO:0000185" id="MAR05109" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05109" sboTerm="SBO:0000185" id="R_MAR05109" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -338807,7 +338786,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05109">
+            <rdf:Description rdf:about="#R_MAR05109">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/LEUt5m"/>
@@ -338818,15 +338797,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02360c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039i" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02360c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039i" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02360m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02360m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05112" sboTerm="SBO:0000185" id="MAR05112" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05112" sboTerm="SBO:0000185" id="R_MAR05112" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -338835,7 +338814,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05112">
+            <rdf:Description rdf:about="#R_MAR05112">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR101493"/>
@@ -338846,13 +338825,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02471c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02471c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02471m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02471m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05113" sboTerm="SBO:0000185" id="MAR05113" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05113" sboTerm="SBO:0000185" id="R_MAR05113" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 2</p>
@@ -338861,7 +338840,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05113">
+            <rdf:Description rdf:about="#R_MAR05113">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR95706"/>
@@ -338872,13 +338851,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01307c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01307c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01307m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01307m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05114" sboTerm="SBO:0000185" id="MAR05114" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05114" sboTerm="SBO:0000185" id="R_MAR05114" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 4</p>
@@ -338887,7 +338866,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05114">
+            <rdf:Description rdf:about="#R_MAR05114">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR104354"/>
@@ -338898,13 +338877,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02896c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02896c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02896m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02896m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05115" sboTerm="SBO:0000185" id="MAR05115" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05115" sboTerm="SBO:0000185" id="R_MAR05115" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -338912,7 +338891,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05115">
+            <rdf:Description rdf:about="#R_MAR05115">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR102635"/>
@@ -338923,15 +338902,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02724c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039i" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02724c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039i" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02724m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02724m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05116" sboTerm="SBO:0000185" id="MAR05116" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05116" sboTerm="SBO:0000185" id="R_MAR05116" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -338939,7 +338918,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05116">
+            <rdf:Description rdf:about="#R_MAR05116">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105473"/>
@@ -338950,15 +338929,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02724m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039i" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02724m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039i" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02724c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02724c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05117" sboTerm="SBO:0000185" id="MAR05117" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05117" sboTerm="SBO:0000185" id="R_MAR05117" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -338967,7 +338946,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05117">
+            <rdf:Description rdf:about="#R_MAR05117">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR104852"/>
@@ -338978,13 +338957,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02993c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02993c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02993m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02993m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05118" sboTerm="SBO:0000185" id="MAR05118" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05118" sboTerm="SBO:0000185" id="R_MAR05118" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -338992,7 +338971,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05118">
+            <rdf:Description rdf:about="#R_MAR05118">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/VALt5m"/>
@@ -339003,15 +338982,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03135c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039i" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03135c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039i" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03135m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03135m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05121" sboTerm="SBO:0000185" id="MAR05121" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05121" sboTerm="SBO:0000185" id="R_MAR05121" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -339020,7 +338999,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05121">
+            <rdf:Description rdf:about="#R_MAR05121">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR97029"/>
@@ -339031,13 +339010,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01628c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01628c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01628m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01628m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05122" sboTerm="SBO:0000185" id="MAR05122" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05122" sboTerm="SBO:0000185" id="R_MAR05122" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -339046,7 +339025,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05122">
+            <rdf:Description rdf:about="#R_MAR05122">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GLUt2m"/>
@@ -339059,18 +339038,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01974c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01974c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01974m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01974m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="GC1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05125" sboTerm="SBO:0000185" id="MAR05125" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05125" sboTerm="SBO:0000185" id="R_MAR05125" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -339079,7 +339058,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05125">
+            <rdf:Description rdf:about="#R_MAR05125">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PROtm"/>
@@ -339090,15 +339069,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02770c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039i" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02770c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039i" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02770m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02770m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05126" sboTerm="SBO:0000185" id="MAR05126" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05126" sboTerm="SBO:0000185" id="R_MAR05126" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -339106,7 +339085,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05126">
+            <rdf:Description rdf:about="#R_MAR05126">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PROtm"/>
@@ -339117,15 +339096,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02770m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039i" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02770m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039i" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02770c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02770c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05222" sboTerm="SBO:0000185" id="MAR05222" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05222" sboTerm="SBO:0000185" id="R_MAR05222" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -339133,7 +339112,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05222">
+            <rdf:Description rdf:about="#R_MAR05222">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_5222"/>
@@ -339143,13 +339122,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02485c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02485c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02485m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02485m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05223" sboTerm="SBO:0000185" id="MAR05223" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05223" sboTerm="SBO:0000185" id="R_MAR05223" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -339157,7 +339136,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05223">
+            <rdf:Description rdf:about="#R_MAR05223">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR104924"/>
@@ -339167,13 +339146,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02487c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02487c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02487m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02487m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05225" sboTerm="SBO:0000185" id="MAR05225" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05225" sboTerm="SBO:0000185" id="R_MAR05225" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -339181,7 +339160,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05225">
+            <rdf:Description rdf:about="#R_MAR05225">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_5225"/>
@@ -339191,13 +339170,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02935m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02935m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02935c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02935c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05227" sboTerm="SBO:0000185" id="MAR05227" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05227" sboTerm="SBO:0000185" id="R_MAR05227" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -339205,7 +339184,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05227">
+            <rdf:Description rdf:about="#R_MAR05227">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_5227"/>
@@ -339215,13 +339194,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01358c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01358c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01358m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01358m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05292" sboTerm="SBO:0000185" id="MAR05292" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05292" sboTerm="SBO:0000185" id="R_MAR05292" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -339230,7 +339209,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05292">
+            <rdf:Description rdf:about="#R_MAR05292">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ACt2m"/>
@@ -339244,10 +339223,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01252c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01252c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01252m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01252m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -339256,7 +339235,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05304" sboTerm="SBO:0000185" id="MAR05304" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05304" sboTerm="SBO:0000185" id="R_MAR05304" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -339265,7 +339244,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05304">
+            <rdf:Description rdf:about="#R_MAR05304">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR97806"/>
@@ -339276,13 +339255,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01752c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01752c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01752m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01752m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05348" sboTerm="SBO:0000185" id="MAR05348" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05348" sboTerm="SBO:0000185" id="R_MAR05348" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -339291,7 +339270,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05348">
+            <rdf:Description rdf:about="#R_MAR05348">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/r1155"/>
@@ -339305,12 +339284,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00671c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00671c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00671m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00671m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -339320,7 +339299,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05349" sboTerm="SBO:0000185" id="MAR05349" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05349" sboTerm="SBO:0000185" id="R_MAR05349" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -339329,7 +339308,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05349">
+            <rdf:Description rdf:about="#R_MAR05349">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105472"/>
@@ -339342,12 +339321,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00671m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039i" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00671m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039i" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00671c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00671c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -339357,7 +339336,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05361" sboTerm="SBO:0000185" id="MAR05361" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05361" sboTerm="SBO:0000185" id="R_MAR05361" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -339365,7 +339344,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05361">
+            <rdf:Description rdf:about="#R_MAR05361">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR103102"/>
@@ -339376,13 +339355,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02774c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02774c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02774m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02774m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05411" sboTerm="SBO:0000185" id="MAR05411" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05411" sboTerm="SBO:0000185" id="R_MAR05411" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -339391,7 +339370,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05411">
+            <rdf:Description rdf:about="#R_MAR05411">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/L_LACtm"/>
@@ -339403,18 +339382,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02403c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02403c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02403m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02403m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="hrm"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05420" sboTerm="SBO:0000185" id="MAR05420" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05420" sboTerm="SBO:0000185" id="R_MAR05420" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -339422,7 +339401,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05420">
+            <rdf:Description rdf:about="#R_MAR05420">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FE2tm"/>
@@ -339434,16 +339413,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01821c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01821c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01821m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01821m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="mfrn"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05426" sboTerm="SBO:0000185" id="MAR05426" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05426" sboTerm="SBO:0000185" id="R_MAR05426" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -339451,7 +339430,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05426">
+            <rdf:Description rdf:about="#R_MAR05426">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105475"/>
@@ -339462,15 +339441,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01253c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02819m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01253c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02819m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01253m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02819c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01253m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02819c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR06276" sboTerm="SBO:0000185" id="MAR06276" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06276" sboTerm="SBO:0000185" id="R_MAR06276" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -339479,7 +339458,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06276">
+            <rdf:Description rdf:about="#R_MAR06276">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106253"/>
@@ -339491,18 +339470,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01580c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01587m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01580c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01587m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01580m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01587c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01580m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01587c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="sea"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06277" sboTerm="SBO:0000185" id="MAR06277" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06277" sboTerm="SBO:0000185" id="R_MAR06277" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -339511,7 +339490,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06277">
+            <rdf:Description rdf:about="#R_MAR06277">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106254"/>
@@ -339523,18 +339502,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01580c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02183m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01580c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02183m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01580m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02183c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01580m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02183c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="sea"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06286" sboTerm="SBO:0000185" id="MAR06286" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06286" sboTerm="SBO:0000185" id="R_MAR06286" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -339543,7 +339522,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06286">
+            <rdf:Description rdf:about="#R_MAR06286">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106262"/>
@@ -339555,20 +339534,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01306m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01587c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01306m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01587c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01306c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01587m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01306c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01587m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="sea"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06287" sboTerm="SBO:0000185" id="MAR06287" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06287" sboTerm="SBO:0000185" id="R_MAR06287" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -339577,7 +339556,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06287">
+            <rdf:Description rdf:about="#R_MAR06287">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106263"/>
@@ -339589,20 +339568,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01587c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02943m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01587c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02943m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01587m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02943c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01587m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02943c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="sea"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06288" sboTerm="SBO:0000185" id="MAR06288" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06288" sboTerm="SBO:0000185" id="R_MAR06288" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -339611,7 +339590,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06288">
+            <rdf:Description rdf:about="#R_MAR06288">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106264"/>
@@ -339623,20 +339602,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01587c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02661m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01587c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02661m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01587m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02661c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01587m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02661c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="sea"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06289" sboTerm="SBO:0000185" id="MAR06289" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06289" sboTerm="SBO:0000185" id="R_MAR06289" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -339645,7 +339624,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06289">
+            <rdf:Description rdf:about="#R_MAR06289">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106265"/>
@@ -339657,20 +339636,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01306m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02183c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01306m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02183c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01306c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02183m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01306c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02183m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="sea"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06290" sboTerm="SBO:0000185" id="MAR06290" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06290" sboTerm="SBO:0000185" id="R_MAR06290" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -339679,7 +339658,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06290">
+            <rdf:Description rdf:about="#R_MAR06290">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106266"/>
@@ -339691,20 +339670,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02183c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02943m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02183c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02943m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02183m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02943c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02183m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02943c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="sea"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06291" sboTerm="SBO:0000185" id="MAR06291" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06291" sboTerm="SBO:0000185" id="R_MAR06291" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -339713,7 +339692,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06291">
+            <rdf:Description rdf:about="#R_MAR06291">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106267"/>
@@ -339725,20 +339704,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02183c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02439m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02183c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02439m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02183m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02439c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02183m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02439c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="sea"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06292" sboTerm="SBO:0000185" id="MAR06292" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06292" sboTerm="SBO:0000185" id="R_MAR06292" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -339747,7 +339726,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06292">
+            <rdf:Description rdf:about="#R_MAR06292">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106268"/>
@@ -339759,20 +339738,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02183c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02661m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02183c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02661m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02183m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02661c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02183m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02661c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="sea"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06293" sboTerm="SBO:0000185" id="MAR06293" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06293" sboTerm="SBO:0000185" id="R_MAR06293" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -339781,7 +339760,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06293">
+            <rdf:Description rdf:about="#R_MAR06293">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106269"/>
@@ -339793,20 +339772,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01306m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01580c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01306m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01580c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01306c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01580m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01306c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01580m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="sea"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06294" sboTerm="SBO:0000185" id="MAR06294" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06294" sboTerm="SBO:0000185" id="R_MAR06294" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -339815,7 +339794,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06294">
+            <rdf:Description rdf:about="#R_MAR06294">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106270"/>
@@ -339827,20 +339806,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01580c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02943m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01580c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02943m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01580m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02943c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01580m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02943c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="sea"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06295" sboTerm="SBO:0000185" id="MAR06295" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06295" sboTerm="SBO:0000185" id="R_MAR06295" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -339849,7 +339828,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06295">
+            <rdf:Description rdf:about="#R_MAR06295">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106271"/>
@@ -339861,20 +339840,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01580c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02439m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01580c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02439m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01580m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02439c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01580m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02439c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="sea"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06296" sboTerm="SBO:0000185" id="MAR06296" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06296" sboTerm="SBO:0000185" id="R_MAR06296" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -339883,7 +339862,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06296">
+            <rdf:Description rdf:about="#R_MAR06296">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106272"/>
@@ -339895,20 +339874,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01580c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02661m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01580c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02661m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01580m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02661c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01580m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02661c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="sea"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06297" sboTerm="SBO:0000185" id="MAR06297" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06297" sboTerm="SBO:0000185" id="R_MAR06297" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -339917,7 +339896,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06297">
+            <rdf:Description rdf:about="#R_MAR06297">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106273"/>
@@ -339929,18 +339908,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02183m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02696c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02183m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02696c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02183c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02696m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02183c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02696m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="sea"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06298" sboTerm="SBO:0000185" id="MAR06298" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06298" sboTerm="SBO:0000185" id="R_MAR06298" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -339949,7 +339928,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06298">
+            <rdf:Description rdf:about="#R_MAR06298">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106274"/>
@@ -339961,18 +339940,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01580m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02696c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01580m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02696c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01580c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02696m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01580c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02696m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="sea"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06299" sboTerm="SBO:0000185" id="MAR06299" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06299" sboTerm="SBO:0000185" id="R_MAR06299" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -339981,7 +339960,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06299">
+            <rdf:Description rdf:about="#R_MAR06299">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106275"/>
@@ -339993,20 +339972,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01365c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02426m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039i" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01365c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02426m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039i" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01365m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02426c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01365m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02426c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG1628"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06300" sboTerm="SBO:0000185" id="MAR06300" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06300" sboTerm="SBO:0000185" id="R_MAR06300" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -340015,7 +339994,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06300">
+            <rdf:Description rdf:about="#R_MAR06300">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106279"/>
@@ -340027,20 +340006,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01365m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02426c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039i" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01365m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02426c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039i" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01365c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02426m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01365c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02426m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG1628"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06301" sboTerm="SBO:0000185" id="MAR06301" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06301" sboTerm="SBO:0000185" id="R_MAR06301" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -340049,7 +340028,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06301">
+            <rdf:Description rdf:about="#R_MAR06301">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106276"/>
@@ -340061,20 +340040,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02426m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02658c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039i" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02426m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02658c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039i" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02426c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02658m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02426c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02658m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG1628"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06302" sboTerm="SBO:0000185" id="MAR06302" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06302" sboTerm="SBO:0000185" id="R_MAR06302" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -340083,7 +340062,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06302">
+            <rdf:Description rdf:about="#R_MAR06302">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106282"/>
@@ -340095,20 +340074,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02426c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02658m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039i" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02426c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02658m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039i" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02426m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02658c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02426m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02658c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG1628"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06303" sboTerm="SBO:0000185" id="MAR06303" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06303" sboTerm="SBO:0000185" id="R_MAR06303" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -340117,7 +340096,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06303">
+            <rdf:Description rdf:about="#R_MAR06303">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106277"/>
@@ -340129,20 +340108,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02125c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02426m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02125c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02426m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02125m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02426c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02125m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02426c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG1628"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06304" sboTerm="SBO:0000185" id="MAR06304" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06304" sboTerm="SBO:0000185" id="R_MAR06304" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -340151,7 +340130,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06304">
+            <rdf:Description rdf:about="#R_MAR06304">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106285"/>
@@ -340163,20 +340142,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02125m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02426c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039i" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02125m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02426c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039i" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02125c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02426m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02125c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02426m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG1628"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06305" sboTerm="SBO:0000185" id="MAR06305" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06305" sboTerm="SBO:0000185" id="R_MAR06305" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -340185,7 +340164,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06305">
+            <rdf:Description rdf:about="#R_MAR06305">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106278"/>
@@ -340197,20 +340176,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01588c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02426m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01588c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02426m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01588m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02426c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01588m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02426c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG1628"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06306" sboTerm="SBO:0000185" id="MAR06306" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06306" sboTerm="SBO:0000185" id="R_MAR06306" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -340219,7 +340198,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06306">
+            <rdf:Description rdf:about="#R_MAR06306">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106289"/>
@@ -340231,20 +340210,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01588m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02426c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039i" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01588m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02426c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039i" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01588c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02426m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01588c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02426m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG1628"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06307" sboTerm="SBO:0000185" id="MAR06307" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06307" sboTerm="SBO:0000185" id="R_MAR06307" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -340253,7 +340232,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06307">
+            <rdf:Description rdf:about="#R_MAR06307">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106280"/>
@@ -340265,20 +340244,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01365m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02658c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039i" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01365m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02658c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039i" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01365c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02658m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01365c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02658m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG1628"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06308" sboTerm="SBO:0000185" id="MAR06308" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06308" sboTerm="SBO:0000185" id="R_MAR06308" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -340287,7 +340266,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06308">
+            <rdf:Description rdf:about="#R_MAR06308">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106283"/>
@@ -340299,20 +340278,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01365c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02658m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039i" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01365c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02658m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039i" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01365m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02658c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01365m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02658c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG1628"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06309" sboTerm="SBO:0000185" id="MAR06309" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06309" sboTerm="SBO:0000185" id="R_MAR06309" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -340321,7 +340300,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06309">
+            <rdf:Description rdf:about="#R_MAR06309">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR100651"/>
@@ -340333,20 +340312,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01365m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02125c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01365m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02125c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01365c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02125m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01365c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02125m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG1628"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06310" sboTerm="SBO:0000185" id="MAR06310" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06310" sboTerm="SBO:0000185" id="R_MAR06310" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -340355,7 +340334,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06310">
+            <rdf:Description rdf:about="#R_MAR06310">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106286"/>
@@ -340367,20 +340346,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01365c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02125m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039i" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01365c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02125m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039i" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01365m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02125c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01365m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02125c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG1628"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06311" sboTerm="SBO:0000185" id="MAR06311" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06311" sboTerm="SBO:0000185" id="R_MAR06311" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -340389,7 +340368,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06311">
+            <rdf:Description rdf:about="#R_MAR06311">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106281"/>
@@ -340401,20 +340380,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01365m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01588c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01365m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01588c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01365c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01588m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01365c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01588m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG1628"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06312" sboTerm="SBO:0000185" id="MAR06312" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06312" sboTerm="SBO:0000185" id="R_MAR06312" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -340423,7 +340402,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06312">
+            <rdf:Description rdf:about="#R_MAR06312">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106290"/>
@@ -340435,20 +340414,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01365c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01588m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039i" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01365c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01588m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039i" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01365m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01588c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01365m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01588c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG1628"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06313" sboTerm="SBO:0000185" id="MAR06313" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06313" sboTerm="SBO:0000185" id="R_MAR06313" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -340457,7 +340436,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06313">
+            <rdf:Description rdf:about="#R_MAR06313">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106284"/>
@@ -340469,20 +340448,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02125c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02658m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02125c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02658m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02125m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02658c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02125m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02658c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG1628"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06314" sboTerm="SBO:0000185" id="MAR06314" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06314" sboTerm="SBO:0000185" id="R_MAR06314" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -340491,7 +340470,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06314">
+            <rdf:Description rdf:about="#R_MAR06314">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106287"/>
@@ -340503,20 +340482,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02125m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02658c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039i" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02125m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02658c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039i" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02125c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02658m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02125c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02658m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG1628"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06315" sboTerm="SBO:0000185" id="MAR06315" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06315" sboTerm="SBO:0000185" id="R_MAR06315" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -340525,7 +340504,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06315">
+            <rdf:Description rdf:about="#R_MAR06315">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106288"/>
@@ -340537,20 +340516,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01588c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02125m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039i" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01588c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02125m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039i" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01588m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02125c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01588m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02125c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG1628"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06316" sboTerm="SBO:0000185" id="MAR06316" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06316" sboTerm="SBO:0000185" id="R_MAR06316" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -340559,7 +340538,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06316">
+            <rdf:Description rdf:about="#R_MAR06316">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106291"/>
@@ -340571,20 +340550,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01588m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02125c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039i" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01588m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02125c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039i" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01588c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02125m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01588c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02125m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG1628"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06317" sboTerm="SBO:0000185" id="MAR06317" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06317" sboTerm="SBO:0000185" id="R_MAR06317" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -340593,7 +340572,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06317">
+            <rdf:Description rdf:about="#R_MAR06317">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/r2412"/>
@@ -340604,20 +340583,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01588m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02658c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039i" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01588m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02658c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039i" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01588c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02658m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01588c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02658m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG1628"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06318" sboTerm="SBO:0000185" id="MAR06318" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06318" sboTerm="SBO:0000185" id="R_MAR06318" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -340626,7 +340605,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06318">
+            <rdf:Description rdf:about="#R_MAR06318">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ORNt4m"/>
@@ -340638,20 +340617,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01588c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02658m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01588c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02658m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01588m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02658c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01588m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02658c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG1628"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06321" sboTerm="SBO:0000185" id="MAR06321" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06321" sboTerm="SBO:0000185" id="R_MAR06321" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -340660,7 +340639,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06321">
+            <rdf:Description rdf:about="#R_MAR06321">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/LYStm"/>
@@ -340673,18 +340652,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02426m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02426m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02426c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02426c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG1628"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06323" sboTerm="SBO:0000185" id="MAR06323" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06323" sboTerm="SBO:0000185" id="R_MAR06323" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -340693,7 +340672,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06323">
+            <rdf:Description rdf:about="#R_MAR06323">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ARGtm"/>
@@ -340704,58 +340683,26 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01365c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039i" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01365c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039i" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01365m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01365m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG1628"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06324" sboTerm="SBO:0000185" id="MAR06324" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06325" sboTerm="SBO:0000185" id="R_MAR06325" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
-            <p>AUTHORS: PMID:14598172;PMID:8132483</p>
           </body>
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06324">
-              <bqbiol:is>
-                <rdf:Bag>
-                  <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ARGtm"/>
-                  <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR95954"/>
-                  <rdf:li rdf:resource="https://identifiers.org/tcdb/2.A.29.19.1"/>
-                </rdf:Bag>
-              </bqbiol:is>
-            </rdf:Description>
-          </rdf:RDF>
-        </annotation>
-        <listOfReactants>
-          <speciesReference species="MAM01365m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-        </listOfReactants>
-        <listOfProducts>
-          <speciesReference species="MAM01365c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-        </listOfProducts>
-        <fbc:geneProductAssociation>
-          <fbc:geneProductRef fbc:geneProduct="CG1628"/>
-        </fbc:geneProductAssociation>
-      </reaction>
-      <reaction metaid="MAR06325" sboTerm="SBO:0000185" id="MAR06325" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
-        <notes>
-          <body xmlns="http://www.w3.org/1999/xhtml">
-            <p>Confidence Level: 0</p>
-          </body>
-        </notes>
-        <annotation>
-          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06325">
+            <rdf:Description rdf:about="#R_MAR06325">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR100645"/>
@@ -340766,18 +340713,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02125c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039i" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02125c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039i" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02125m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02125m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG1628"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06326" sboTerm="SBO:0000185" id="MAR06326" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06326" sboTerm="SBO:0000185" id="R_MAR06326" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -340786,7 +340733,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06326">
+            <rdf:Description rdf:about="#R_MAR06326">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR100647"/>
@@ -340798,18 +340745,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02125m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039i" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02125m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039i" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02125c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02125c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG1628"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06327" sboTerm="SBO:0000185" id="MAR06327" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06327" sboTerm="SBO:0000185" id="R_MAR06327" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -340818,7 +340765,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06327">
+            <rdf:Description rdf:about="#R_MAR06327">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CITRtm"/>
@@ -340830,18 +340777,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01588m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039i" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01588m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039i" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01588c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01588c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG1628"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06328" sboTerm="SBO:0000185" id="MAR06328" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06328" sboTerm="SBO:0000185" id="R_MAR06328" name="ATP:ADP phosphatransferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -340850,7 +340797,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06328">
+            <rdf:Description rdf:about="#R_MAR06328">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ATPtm"/>
@@ -340865,18 +340812,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="sesB"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06330" sboTerm="SBO:0000185" id="MAR06330" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06330" sboTerm="SBO:0000185" id="R_MAR06330" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -340885,7 +340832,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06330">
+            <rdf:Description rdf:about="#R_MAR06330">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106292"/>
@@ -340897,18 +340844,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01306c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01306c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01306m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01306m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Dic1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06331" sboTerm="SBO:0000185" id="MAR06331" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06331" sboTerm="SBO:0000185" id="R_MAR06331" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -340917,7 +340864,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06331">
+            <rdf:Description rdf:about="#R_MAR06331">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106293"/>
@@ -340929,18 +340876,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02661c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02661c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02661m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02661m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Dic1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06332" sboTerm="SBO:0000185" id="MAR06332" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06332" sboTerm="SBO:0000185" id="R_MAR06332" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -340949,7 +340896,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06332">
+            <rdf:Description rdf:about="#R_MAR06332">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/DNDPt13m"/>
@@ -340962,18 +340909,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01637c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01637c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01637m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01637m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Tpc1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06333" sboTerm="SBO:0000185" id="MAR06333" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06333" sboTerm="SBO:0000185" id="R_MAR06333" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -340982,7 +340929,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06333">
+            <rdf:Description rdf:about="#R_MAR06333">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/DNDPt32m"/>
@@ -340995,18 +340942,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01680c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01680c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01680m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01680m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Tpc1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06334" sboTerm="SBO:0000185" id="MAR06334" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06334" sboTerm="SBO:0000185" id="R_MAR06334" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -341015,7 +340962,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06334">
+            <rdf:Description rdf:about="#R_MAR06334">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/DNDPt19m"/>
@@ -341028,18 +340975,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01754c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01754c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01754m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01754m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Tpc1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06335" sboTerm="SBO:0000185" id="MAR06335" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06335" sboTerm="SBO:0000185" id="R_MAR06335" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -341048,7 +340995,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06335">
+            <rdf:Description rdf:about="#R_MAR06335">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/DNDPt12m"/>
@@ -341061,18 +341008,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01285m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01637c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01637c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01637m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01637m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Tpc1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06336" sboTerm="SBO:0000185" id="MAR06336" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06336" sboTerm="SBO:0000185" id="R_MAR06336" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -341081,7 +341028,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06336">
+            <rdf:Description rdf:about="#R_MAR06336">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106294"/>
@@ -341093,18 +341040,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01285m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01680c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01680c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01680m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01680m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Tpc1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06337" sboTerm="SBO:0000185" id="MAR06337" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06337" sboTerm="SBO:0000185" id="R_MAR06337" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -341113,7 +341060,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06337">
+            <rdf:Description rdf:about="#R_MAR06337">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/DNDPt18m"/>
@@ -341126,18 +341073,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01285m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01754c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01754c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01754m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01754m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Tpc1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06338" sboTerm="SBO:0000185" id="MAR06338" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06338" sboTerm="SBO:0000185" id="R_MAR06338" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -341146,7 +341093,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06338">
+            <rdf:Description rdf:about="#R_MAR06338">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/DNDPt2m"/>
@@ -341159,18 +341106,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01642c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01642c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01642m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01642m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Tpc1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06339" sboTerm="SBO:0000185" id="MAR06339" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06339" sboTerm="SBO:0000185" id="R_MAR06339" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -341179,7 +341126,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06339">
+            <rdf:Description rdf:about="#R_MAR06339">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/DNDPt57m"/>
@@ -341192,18 +341139,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01688c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01688c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01688m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01688m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Tpc1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06340" sboTerm="SBO:0000185" id="MAR06340" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06340" sboTerm="SBO:0000185" id="R_MAR06340" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -341212,7 +341159,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06340">
+            <rdf:Description rdf:about="#R_MAR06340">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/DNDPt43m"/>
@@ -341225,18 +341172,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01756c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01756c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01756m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01756m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Tpc1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06341" sboTerm="SBO:0000185" id="MAR06341" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06341" sboTerm="SBO:0000185" id="R_MAR06341" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -341245,7 +341192,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06341">
+            <rdf:Description rdf:about="#R_MAR06341">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/DNDPt1m"/>
@@ -341258,18 +341205,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01285m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01642c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01642c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01642m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01642m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Tpc1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06342" sboTerm="SBO:0000185" id="MAR06342" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06342" sboTerm="SBO:0000185" id="R_MAR06342" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -341278,7 +341225,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06342">
+            <rdf:Description rdf:about="#R_MAR06342">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/DNDPt58m"/>
@@ -341291,18 +341238,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01285m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01688c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01688c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01688m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01688m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Tpc1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06343" sboTerm="SBO:0000185" id="MAR06343" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06343" sboTerm="SBO:0000185" id="R_MAR06343" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -341311,7 +341258,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06343">
+            <rdf:Description rdf:about="#R_MAR06343">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/DNDPt42m"/>
@@ -341324,18 +341271,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01285m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01756c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01756c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01756m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01756m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Tpc1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06389" sboTerm="SBO:0000185" id="MAR06389" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06389" sboTerm="SBO:0000185" id="R_MAR06389" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -341344,7 +341291,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06389">
+            <rdf:Description rdf:about="#R_MAR06389">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/r2472"/>
@@ -341357,18 +341304,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02751m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02914c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02914c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02914m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02914m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="MFS16"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06391" sboTerm="SBO:0000185" id="MAR06391" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06391" sboTerm="SBO:0000185" id="R_MAR06391" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -341377,7 +341324,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06391">
+            <rdf:Description rdf:about="#R_MAR06391">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106328"/>
@@ -341388,18 +341335,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01306c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02026m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01306c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01306m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02026c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01306m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG1907"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06408" sboTerm="SBO:0000185" id="MAR06408" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06408" sboTerm="SBO:0000185" id="R_MAR06408" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -341407,7 +341354,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06408">
+            <rdf:Description rdf:about="#R_MAR06408">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_6408"/>
@@ -341417,15 +341364,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01701c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039i" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01701c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039i" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01701m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01701m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR06431" sboTerm="SBO:0000185" id="MAR06431" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06431" sboTerm="SBO:0000185" id="R_MAR06431" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -341433,7 +341380,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06431">
+            <rdf:Description rdf:about="#R_MAR06431">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_6431"/>
@@ -341443,13 +341390,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00345c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00345c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00345m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00345m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR06438" sboTerm="SBO:0000185" id="MAR06438" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06438" sboTerm="SBO:0000185" id="R_MAR06438" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -341457,7 +341404,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06438">
+            <rdf:Description rdf:about="#R_MAR06438">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_6438"/>
@@ -341467,13 +341414,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00766c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00766c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00766m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00766m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR06446" sboTerm="SBO:0000185" id="MAR06446" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06446" sboTerm="SBO:0000185" id="R_MAR06446" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -341481,7 +341428,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06446">
+            <rdf:Description rdf:about="#R_MAR06446">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_6446"/>
@@ -341491,13 +341438,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00347c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00347c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00347m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00347m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR06454" sboTerm="SBO:0000185" id="MAR06454" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06454" sboTerm="SBO:0000185" id="R_MAR06454" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -341505,7 +341452,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06454">
+            <rdf:Description rdf:about="#R_MAR06454">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_6454"/>
@@ -341515,13 +341462,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01923m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01923m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01923c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01923c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR06455" sboTerm="SBO:0000185" id="MAR06455" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06455" sboTerm="SBO:0000185" id="R_MAR06455" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -341529,7 +341476,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06455">
+            <rdf:Description rdf:about="#R_MAR06455">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_6455"/>
@@ -341539,15 +341486,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01097m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01097m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01097c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01097c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR06469" sboTerm="SBO:0000185" id="MAR06469" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06469" sboTerm="SBO:0000185" id="R_MAR06469" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -341555,7 +341502,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06469">
+            <rdf:Description rdf:about="#R_MAR06469">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_6469"/>
@@ -341565,13 +341512,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00346c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00346c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00346m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00346m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR06481" sboTerm="SBO:0000185" id="MAR06481" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06481" sboTerm="SBO:0000185" id="R_MAR06481" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -341579,7 +341526,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06481">
+            <rdf:Description rdf:about="#R_MAR06481">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_6481"/>
@@ -341589,13 +341536,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00344c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00344c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00344m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00344m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR06513" sboTerm="SBO:0000185" id="MAR06513" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06513" sboTerm="SBO:0000185" id="R_MAR06513" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -341603,7 +341550,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06513">
+            <rdf:Description rdf:about="#R_MAR06513">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105454"/>
@@ -341614,15 +341561,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01802m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01803c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01802m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01803c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01802c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01803m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01802c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01803m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR06517" sboTerm="SBO:0000185" id="MAR06517" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06517" sboTerm="SBO:0000185" id="R_MAR06517" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -341630,7 +341577,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06517">
+            <rdf:Description rdf:about="#R_MAR06517">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CYANtm"/>
@@ -341642,13 +341589,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02145c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02145c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02145m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02145m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR06521" sboTerm="SBO:0000185" id="MAR06521" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06521" sboTerm="SBO:0000185" id="R_MAR06521" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -341656,7 +341603,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06521">
+            <rdf:Description rdf:about="#R_MAR06521">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FUMTSULtm"/>
@@ -341668,18 +341615,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01862c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02991m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01862c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02991m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01862m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02991c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01862m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02991c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Dic1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06522" sboTerm="SBO:0000185" id="MAR06522" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06522" sboTerm="SBO:0000185" id="R_MAR06522" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -341687,7 +341634,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06522">
+            <rdf:Description rdf:about="#R_MAR06522">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/MALTSULtm"/>
@@ -341699,18 +341646,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02439c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02991m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02439c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02991m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02439m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02991c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02439m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02991c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Dic1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06618" sboTerm="SBO:0000185" id="MAR06618" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06618" sboTerm="SBO:0000185" id="R_MAR06618" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -341718,7 +341665,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06618">
+            <rdf:Description rdf:about="#R_MAR06618">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_6618"/>
@@ -341728,15 +341675,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02990c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039i" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02990c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039i" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02990m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02990m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR06620" sboTerm="SBO:0000185" id="MAR06620" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06620" sboTerm="SBO:0000185" id="R_MAR06620" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -341744,7 +341691,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06620">
+            <rdf:Description rdf:about="#R_MAR06620">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_6620"/>
@@ -341754,15 +341701,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02666c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039i" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02666c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039i" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02666m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02666m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR06781" sboTerm="SBO:0000185" id="MAR06781" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06781" sboTerm="SBO:0000185" id="R_MAR06781" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -341770,7 +341717,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06781">
+            <rdf:Description rdf:about="#R_MAR06781">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/34HPPt2m"/>
@@ -341782,15 +341729,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01005c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01005c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01005m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01005m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR06890" sboTerm="SBO:0000185" id="MAR06890" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06890" sboTerm="SBO:0000185" id="R_MAR06890" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -341798,7 +341745,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06890">
+            <rdf:Description rdf:about="#R_MAR06890">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/4HBZtm"/>
@@ -341808,13 +341755,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00995c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00995c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00995m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00995m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR06902" sboTerm="SBO:0000185" id="MAR06902" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06902" sboTerm="SBO:0000185" id="R_MAR06902" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -341822,7 +341769,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06902">
+            <rdf:Description rdf:about="#R_MAR06902">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/DECDPtm"/>
@@ -341832,13 +341779,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01316c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01316c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01316m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01316m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07638" sboTerm="SBO:0000185" id="MAR07638" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07638" sboTerm="SBO:0000185" id="R_MAR07638" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -341846,7 +341793,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07638">
+            <rdf:Description rdf:about="#R_MAR07638">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/Htm"/>
@@ -341858,10 +341805,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -341870,7 +341817,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07708" sboTerm="SBO:0000185" id="MAR07708" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07708" sboTerm="SBO:0000185" id="R_MAR07708" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -341878,7 +341825,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07708">
+            <rdf:Description rdf:about="#R_MAR07708">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GLXtm"/>
@@ -341890,13 +341837,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02007c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02007c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02007m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02007m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07719" sboTerm="SBO:0000185" id="MAR07719" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07719" sboTerm="SBO:0000185" id="R_MAR07719" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -341904,7 +341851,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07719">
+            <rdf:Description rdf:about="#R_MAR07719">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/Uritm"/>
@@ -341916,16 +341863,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03123c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03123c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03123m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03123m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Ent1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07723" sboTerm="SBO:0000185" id="MAR07723" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07723" sboTerm="SBO:0000185" id="R_MAR07723" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -341933,7 +341880,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07723">
+            <rdf:Description rdf:about="#R_MAR07723">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CYTDtm"/>
@@ -341945,16 +341892,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01630m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01630m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Ent1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07757" sboTerm="SBO:0000185" id="MAR07757" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07757" sboTerm="SBO:0000185" id="R_MAR07757" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -341962,7 +341909,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07757">
+            <rdf:Description rdf:about="#R_MAR07757">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_7757"/>
@@ -341972,18 +341919,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02944c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039i" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02944c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039i" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02944m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02944m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Acbp1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07758" sboTerm="SBO:0000185" id="MAR07758" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07758" sboTerm="SBO:0000185" id="R_MAR07758" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -341991,7 +341938,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07758">
+            <rdf:Description rdf:about="#R_MAR07758">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_7758"/>
@@ -342001,18 +341948,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01514c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039i" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01514c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039i" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01514m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01514m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Acbp1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07760" sboTerm="SBO:0000185" id="MAR07760" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07760" sboTerm="SBO:0000185" id="R_MAR07760" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -342020,7 +341967,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07760">
+            <rdf:Description rdf:about="#R_MAR07760">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_7760"/>
@@ -342030,18 +341977,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01736c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039i" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01736c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039i" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01736m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01736m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Ent3"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07769" sboTerm="SBO:0000185" id="MAR07769" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07769" sboTerm="SBO:0000185" id="R_MAR07769" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -342050,7 +341997,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07769">
+            <rdf:Description rdf:about="#R_MAR07769">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/AMETt2m"/>
@@ -342062,18 +342009,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02871c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02877m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02871c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02877m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02871m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02877c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02871m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02877c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG4743"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07804" sboTerm="SBO:0000185" id="MAR07804" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07804" sboTerm="SBO:0000185" id="R_MAR07804" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -342081,7 +342028,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07804">
+            <rdf:Description rdf:about="#R_MAR07804">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/DNDPt29m"/>
@@ -342094,18 +342041,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01637m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01643c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01637m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01643c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01637c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01643m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01637c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01643m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Tpc1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07806" sboTerm="SBO:0000185" id="MAR07806" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07806" sboTerm="SBO:0000185" id="R_MAR07806" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -342113,7 +342060,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07806">
+            <rdf:Description rdf:about="#R_MAR07806">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/DNDPt35m"/>
@@ -342126,18 +342073,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01637m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01680c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01637m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01680c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01637c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01680m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01637c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01680m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Tpc1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07808" sboTerm="SBO:0000185" id="MAR07808" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07808" sboTerm="SBO:0000185" id="R_MAR07808" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -342145,7 +342092,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07808">
+            <rdf:Description rdf:about="#R_MAR07808">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/DNDPt22m"/>
@@ -342158,18 +342105,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01747c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01754m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01747c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01754m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01747m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01754c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01747m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01754c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Tpc1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07810" sboTerm="SBO:0000185" id="MAR07810" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07810" sboTerm="SBO:0000185" id="R_MAR07810" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -342177,7 +342124,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07810">
+            <rdf:Description rdf:about="#R_MAR07810">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/DNDPt33m"/>
@@ -342190,18 +342137,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01680c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01754m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01680c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01754m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01680m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01754c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01680m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01754c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Tpc1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07812" sboTerm="SBO:0000185" id="MAR07812" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07812" sboTerm="SBO:0000185" id="R_MAR07812" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -342209,7 +342156,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07812">
+            <rdf:Description rdf:about="#R_MAR07812">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/DNDPt8m"/>
@@ -342222,18 +342169,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01637c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01754m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01637c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01754m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01637m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01754c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01637m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01754c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Tpc1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07814" sboTerm="SBO:0000185" id="MAR07814" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07814" sboTerm="SBO:0000185" id="R_MAR07814" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -342241,7 +342188,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07814">
+            <rdf:Description rdf:about="#R_MAR07814">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/DNDPt26m"/>
@@ -342254,18 +342201,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01643c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01754m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01643c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01754m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01643m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01754c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01643m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01754c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Tpc1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07815" sboTerm="SBO:0000185" id="MAR07815" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07815" sboTerm="SBO:0000185" id="R_MAR07815" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -342273,7 +342220,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07815">
+            <rdf:Description rdf:about="#R_MAR07815">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/DNDPt20m"/>
@@ -342285,18 +342232,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01747c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01747c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01747m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01747m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Tpc1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07816" sboTerm="SBO:0000185" id="MAR07816" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07816" sboTerm="SBO:0000185" id="R_MAR07816" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -342304,7 +342251,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07816">
+            <rdf:Description rdf:about="#R_MAR07816">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/DNDPt21m"/>
@@ -342316,18 +342263,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01285m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01747c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01747c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01747m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01747m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Tpc1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07818" sboTerm="SBO:0000185" id="MAR07818" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07818" sboTerm="SBO:0000185" id="R_MAR07818" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -342335,7 +342282,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07818">
+            <rdf:Description rdf:about="#R_MAR07818">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/DNDPt34m"/>
@@ -342348,18 +342295,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01680c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01747m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01680c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01747m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01680m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01747c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01680m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01747c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Tpc1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07820" sboTerm="SBO:0000185" id="MAR07820" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07820" sboTerm="SBO:0000185" id="R_MAR07820" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -342367,7 +342314,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07820">
+            <rdf:Description rdf:about="#R_MAR07820">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/DNDPt9m"/>
@@ -342380,18 +342327,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01637c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01747m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01637c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01747m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01637m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01747c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01637m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01747c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Tpc1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07822" sboTerm="SBO:0000185" id="MAR07822" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07822" sboTerm="SBO:0000185" id="R_MAR07822" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -342399,7 +342346,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07822">
+            <rdf:Description rdf:about="#R_MAR07822">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/DNDPt27m"/>
@@ -342412,18 +342359,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01643c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01747m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01643c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01747m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01643m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01747c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01643m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01747c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Tpc1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07824" sboTerm="SBO:0000185" id="MAR07824" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07824" sboTerm="SBO:0000185" id="R_MAR07824" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -342431,7 +342378,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07824">
+            <rdf:Description rdf:about="#R_MAR07824">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/DNDPt36m"/>
@@ -342444,18 +342391,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01643m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01680c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01643m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01680c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01643c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01680m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01643c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01680m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Tpc1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07825" sboTerm="SBO:0000185" id="MAR07825" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07825" sboTerm="SBO:0000185" id="R_MAR07825" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -342463,7 +342410,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07825">
+            <rdf:Description rdf:about="#R_MAR07825">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/DNDPt30m"/>
@@ -342475,18 +342422,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01285m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01643c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01643c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01643m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01643m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Tpc1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07826" sboTerm="SBO:0000185" id="MAR07826" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07826" sboTerm="SBO:0000185" id="R_MAR07826" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -342494,7 +342441,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07826">
+            <rdf:Description rdf:about="#R_MAR07826">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/DNDPt31m"/>
@@ -342506,18 +342453,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01643c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01643c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01643m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01643m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Tpc1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07827" sboTerm="SBO:0000185" id="MAR07827" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07827" sboTerm="SBO:0000185" id="R_MAR07827" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -342525,7 +342472,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07827">
+            <rdf:Description rdf:about="#R_MAR07827">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/DNDPt37m"/>
@@ -342537,18 +342484,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01747m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01756c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01747m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01756c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01747c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01756m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01747c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01756m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Tpc1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07828" sboTerm="SBO:0000185" id="MAR07828" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07828" sboTerm="SBO:0000185" id="R_MAR07828" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -342556,7 +342503,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07828">
+            <rdf:Description rdf:about="#R_MAR07828">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/DNDPt38m"/>
@@ -342568,18 +342515,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01754m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01756c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01754m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01756c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01754c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01756m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01754c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01756m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Tpc1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07829" sboTerm="SBO:0000185" id="MAR07829" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07829" sboTerm="SBO:0000185" id="R_MAR07829" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -342587,7 +342534,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07829">
+            <rdf:Description rdf:about="#R_MAR07829">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/DNDPt39m"/>
@@ -342599,18 +342546,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01680m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01756c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01680m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01756c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01680c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01756m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01680c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01756m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Tpc1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07830" sboTerm="SBO:0000185" id="MAR07830" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07830" sboTerm="SBO:0000185" id="R_MAR07830" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -342618,7 +342565,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07830">
+            <rdf:Description rdf:about="#R_MAR07830">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/DNDPt3m"/>
@@ -342630,18 +342577,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01642c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01643m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01642c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01643m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01642m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01643c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01642m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01643c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Tpc1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07831" sboTerm="SBO:0000185" id="MAR07831" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07831" sboTerm="SBO:0000185" id="R_MAR07831" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -342649,7 +342596,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07831">
+            <rdf:Description rdf:about="#R_MAR07831">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/DNDPt40m"/>
@@ -342661,18 +342608,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01637m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01756c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01637m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01756c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01637c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01756m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01637c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01756m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Tpc1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07832" sboTerm="SBO:0000185" id="MAR07832" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07832" sboTerm="SBO:0000185" id="R_MAR07832" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -342680,7 +342627,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07832">
+            <rdf:Description rdf:about="#R_MAR07832">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/DNDPt41m"/>
@@ -342692,18 +342639,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01643m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01756c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01643m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01756c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01643c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01756m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01643c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01756m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Tpc1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07833" sboTerm="SBO:0000185" id="MAR07833" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07833" sboTerm="SBO:0000185" id="R_MAR07833" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -342711,7 +342658,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07833">
+            <rdf:Description rdf:about="#R_MAR07833">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/DNDPt44m"/>
@@ -342723,18 +342670,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01753c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01753c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01753m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01753m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Tpc1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07834" sboTerm="SBO:0000185" id="MAR07834" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07834" sboTerm="SBO:0000185" id="R_MAR07834" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -342742,7 +342689,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07834">
+            <rdf:Description rdf:about="#R_MAR07834">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/DNDPt45m"/>
@@ -342754,18 +342701,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01285m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01753c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01753c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01753m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01753m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Tpc1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07835" sboTerm="SBO:0000185" id="MAR07835" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07835" sboTerm="SBO:0000185" id="R_MAR07835" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -342773,7 +342720,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07835">
+            <rdf:Description rdf:about="#R_MAR07835">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/DNDPt46m"/>
@@ -342785,18 +342732,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01753c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01754m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01753c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01754m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01753m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01754c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01753m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01754c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Tpc1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07836" sboTerm="SBO:0000185" id="MAR07836" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07836" sboTerm="SBO:0000185" id="R_MAR07836" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -342804,7 +342751,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07836">
+            <rdf:Description rdf:about="#R_MAR07836">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/DNDPt47m"/>
@@ -342816,18 +342763,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01747m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01753c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01747m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01753c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01747c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01753m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01747c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01753m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Tpc1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07837" sboTerm="SBO:0000185" id="MAR07837" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07837" sboTerm="SBO:0000185" id="R_MAR07837" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -342835,7 +342782,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07837">
+            <rdf:Description rdf:about="#R_MAR07837">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/DNDPt48m"/>
@@ -342847,18 +342794,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01680m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01753c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01680m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01753c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01680c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01753m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01680c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01753m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Tpc1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07838" sboTerm="SBO:0000185" id="MAR07838" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07838" sboTerm="SBO:0000185" id="R_MAR07838" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -342866,7 +342813,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07838">
+            <rdf:Description rdf:about="#R_MAR07838">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/DNDPt49m"/>
@@ -342878,18 +342825,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01637m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01753c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01637m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01753c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01637c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01753m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01637c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01753m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Tpc1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07839" sboTerm="SBO:0000185" id="MAR07839" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07839" sboTerm="SBO:0000185" id="R_MAR07839" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -342897,7 +342844,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07839">
+            <rdf:Description rdf:about="#R_MAR07839">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/DNDPt4m"/>
@@ -342909,18 +342856,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01642c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01754m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01642c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01754m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01642m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01754c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01642m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01754c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Tpc1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07840" sboTerm="SBO:0000185" id="MAR07840" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07840" sboTerm="SBO:0000185" id="R_MAR07840" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -342928,7 +342875,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07840">
+            <rdf:Description rdf:about="#R_MAR07840">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/DNDPt50m"/>
@@ -342940,18 +342887,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01643m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01753c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01643m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01753c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01643c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01753m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01643c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01753m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Tpc1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07841" sboTerm="SBO:0000185" id="MAR07841" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07841" sboTerm="SBO:0000185" id="R_MAR07841" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -342959,7 +342906,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07841">
+            <rdf:Description rdf:about="#R_MAR07841">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/DNDPt51m"/>
@@ -342971,18 +342918,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01643m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01645c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01643m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01645c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01643c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01645m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01643c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01645m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Tpc1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07842" sboTerm="SBO:0000185" id="MAR07842" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07842" sboTerm="SBO:0000185" id="R_MAR07842" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -342990,7 +342937,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07842">
+            <rdf:Description rdf:about="#R_MAR07842">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/DNDPt52m"/>
@@ -343002,18 +342949,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01645c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01754m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01645c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01754m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01645m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01754c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01645m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01754c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Tpc1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07843" sboTerm="SBO:0000185" id="MAR07843" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07843" sboTerm="SBO:0000185" id="R_MAR07843" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -343021,7 +342968,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07843">
+            <rdf:Description rdf:about="#R_MAR07843">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/DNDPt53m"/>
@@ -343033,18 +342980,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01645c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01680m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01645c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01680m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01645m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01680c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01645m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01680c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Tpc1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07844" sboTerm="SBO:0000185" id="MAR07844" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07844" sboTerm="SBO:0000185" id="R_MAR07844" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -343052,7 +342999,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07844">
+            <rdf:Description rdf:about="#R_MAR07844">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/DNDPt54m"/>
@@ -343064,18 +343011,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01637m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01645c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01637m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01645c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01637c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01645m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01637c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01645m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Tpc1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07845" sboTerm="SBO:0000185" id="MAR07845" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07845" sboTerm="SBO:0000185" id="R_MAR07845" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -343083,7 +343030,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07845">
+            <rdf:Description rdf:about="#R_MAR07845">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/DNDPt55m"/>
@@ -343095,18 +343042,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01285m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01645c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01645c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01645m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01645m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Tpc1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07846" sboTerm="SBO:0000185" id="MAR07846" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07846" sboTerm="SBO:0000185" id="R_MAR07846" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -343114,7 +343061,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07846">
+            <rdf:Description rdf:about="#R_MAR07846">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/DNDPt56m"/>
@@ -343126,18 +343073,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01645c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01645c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01645m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01645m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Tpc1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07847" sboTerm="SBO:0000185" id="MAR07847" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07847" sboTerm="SBO:0000185" id="R_MAR07847" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -343145,7 +343092,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07847">
+            <rdf:Description rdf:about="#R_MAR07847">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/DNDPt59m"/>
@@ -343157,18 +343104,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01637m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01688c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01637m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01688c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01637c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01688m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01637c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01688m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Tpc1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07848" sboTerm="SBO:0000185" id="MAR07848" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07848" sboTerm="SBO:0000185" id="R_MAR07848" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -343176,7 +343123,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07848">
+            <rdf:Description rdf:about="#R_MAR07848">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/DNDPt5m"/>
@@ -343188,18 +343135,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01642c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01747m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01642c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01747m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01642m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01747c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01642m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01747c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Tpc1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07849" sboTerm="SBO:0000185" id="MAR07849" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07849" sboTerm="SBO:0000185" id="R_MAR07849" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -343207,7 +343154,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07849">
+            <rdf:Description rdf:about="#R_MAR07849">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/DNDPt60m"/>
@@ -343219,18 +343166,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01688c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01754m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01688c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01754m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01688m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01754c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01688m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01754c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Tpc1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07850" sboTerm="SBO:0000185" id="MAR07850" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07850" sboTerm="SBO:0000185" id="R_MAR07850" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -343238,7 +343185,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07850">
+            <rdf:Description rdf:about="#R_MAR07850">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/DNDPt61m"/>
@@ -343250,18 +343197,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01688c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01747m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01688c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01747m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01688m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01747c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01688m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01747c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Tpc1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07851" sboTerm="SBO:0000185" id="MAR07851" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07851" sboTerm="SBO:0000185" id="R_MAR07851" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -343269,7 +343216,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07851">
+            <rdf:Description rdf:about="#R_MAR07851">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/DNDPt62m"/>
@@ -343281,18 +343228,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01680m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01688c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01680m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01688c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01680c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01688m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01680c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01688m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Tpc1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07852" sboTerm="SBO:0000185" id="MAR07852" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07852" sboTerm="SBO:0000185" id="R_MAR07852" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -343300,7 +343247,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07852">
+            <rdf:Description rdf:about="#R_MAR07852">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/DNDPt63m"/>
@@ -343312,18 +343259,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01643m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01688c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01643m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01688c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01643c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01688m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01643c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01688m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Tpc1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07853" sboTerm="SBO:0000185" id="MAR07853" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07853" sboTerm="SBO:0000185" id="R_MAR07853" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -343331,7 +343278,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07853">
+            <rdf:Description rdf:about="#R_MAR07853">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/DNDPt6m"/>
@@ -343343,18 +343290,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01642c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01680m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01642c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01680m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01642m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01680c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01642m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01680c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Tpc1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07854" sboTerm="SBO:0000185" id="MAR07854" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07854" sboTerm="SBO:0000185" id="R_MAR07854" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -343362,7 +343309,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07854">
+            <rdf:Description rdf:about="#R_MAR07854">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/DNDPt7m"/>
@@ -343374,18 +343321,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01637m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01642c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01637m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01642c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01637c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01642m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01637c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01642m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Tpc1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07897" sboTerm="SBO:0000185" id="MAR07897" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07897" sboTerm="SBO:0000185" id="R_MAR07897" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -343393,7 +343340,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07897">
+            <rdf:Description rdf:about="#R_MAR07897">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_7897"/>
@@ -343403,13 +343350,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02193c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02193c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02193m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02193m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07899" sboTerm="SBO:0000185" id="MAR07899" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07899" sboTerm="SBO:0000185" id="R_MAR07899" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -343417,7 +343364,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07899">
+            <rdf:Description rdf:about="#R_MAR07899">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_7899"/>
@@ -343427,13 +343374,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01714c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01714c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01714m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01714m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07914" sboTerm="SBO:0000185" id="MAR07914" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07914" sboTerm="SBO:0000185" id="R_MAR07914" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -343441,7 +343388,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07914">
+            <rdf:Description rdf:about="#R_MAR07914">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/10FTHF5GLUtm"/>
@@ -343453,13 +343400,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00267m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00267m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00267c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00267c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07917" sboTerm="SBO:0000185" id="MAR07917" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07917" sboTerm="SBO:0000185" id="R_MAR07917" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -343467,7 +343414,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07917">
+            <rdf:Description rdf:about="#R_MAR07917">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/10FTHF6GLUtm"/>
@@ -343479,13 +343426,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00268m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00268m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00268c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00268c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07923" sboTerm="SBO:0000185" id="MAR07923" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07923" sboTerm="SBO:0000185" id="R_MAR07923" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -343493,7 +343440,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07923">
+            <rdf:Description rdf:about="#R_MAR07923">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/10FTHF7GLUtm"/>
@@ -343505,13 +343452,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00269m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00269m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00269c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00269c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07995" sboTerm="SBO:0000185" id="MAR07995" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07995" sboTerm="SBO:0000185" id="R_MAR07995" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -343519,7 +343466,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07995">
+            <rdf:Description rdf:about="#R_MAR07995">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/VITD2tm"/>
@@ -343531,13 +343478,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03141c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03141c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03141m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03141m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07998" sboTerm="SBO:0000185" id="MAR07998" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07998" sboTerm="SBO:0000185" id="R_MAR07998" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -343545,7 +343492,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07998">
+            <rdf:Description rdf:about="#R_MAR07998">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/25HVITD2tin_m"/>
@@ -343557,13 +343504,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00620c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00620c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00620m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00620m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08000" sboTerm="SBO:0000185" id="MAR08000" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08000" sboTerm="SBO:0000185" id="R_MAR08000" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -343571,7 +343518,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08000">
+            <rdf:Description rdf:about="#R_MAR08000">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/24_25DHVITD3tm"/>
@@ -343582,13 +343529,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00035m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00035m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00035c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00035c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08001" sboTerm="SBO:0000185" id="MAR08001" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08001" sboTerm="SBO:0000185" id="R_MAR08001" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -343596,7 +343543,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08001">
+            <rdf:Description rdf:about="#R_MAR08001">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/24_25DHVITD2tm"/>
@@ -343607,13 +343554,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00613m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00613m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00613c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00613c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08009" sboTerm="SBO:0000185" id="MAR08009" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08009" sboTerm="SBO:0000185" id="R_MAR08009" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -343621,7 +343568,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08009">
+            <rdf:Description rdf:about="#R_MAR08009">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/25HVITD3tin_m"/>
@@ -343633,13 +343580,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01415c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01415c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01415m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01415m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08089" sboTerm="SBO:0000185" id="MAR08089" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08089" sboTerm="SBO:0000185" id="R_MAR08089" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -343647,7 +343594,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08089">
+            <rdf:Description rdf:about="#R_MAR08089">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/3AIBtm"/>
@@ -343658,16 +343605,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02325m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02325m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02325c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02325c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Gabat"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08093" sboTerm="SBO:0000185" id="MAR08093" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08093" sboTerm="SBO:0000185" id="R_MAR08093" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -343675,7 +343622,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08093">
+            <rdf:Description rdf:about="#R_MAR08093">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/3MOPt2im"/>
@@ -343687,15 +343634,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00669c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00669c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00669m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00669m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08099" sboTerm="SBO:0000185" id="MAR08099" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08099" sboTerm="SBO:0000185" id="R_MAR08099" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -343703,7 +343650,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08099">
+            <rdf:Description rdf:about="#R_MAR08099">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/4MOPt2im"/>
@@ -343715,15 +343662,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01013c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01013c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01013m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01013m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08120" sboTerm="SBO:0000185" id="MAR08120" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08120" sboTerm="SBO:0000185" id="R_MAR08120" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -343731,7 +343678,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08120">
+            <rdf:Description rdf:about="#R_MAR08120">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/5THFtm"/>
@@ -343743,13 +343690,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02692m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02692m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02692c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02692c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08122" sboTerm="SBO:0000185" id="MAR08122" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08122" sboTerm="SBO:0000185" id="R_MAR08122" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -343757,7 +343704,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08122">
+            <rdf:Description rdf:about="#R_MAR08122">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/6DHFtm"/>
@@ -343769,13 +343716,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02118m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02118m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02118c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02118c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08124" sboTerm="SBO:0000185" id="MAR08124" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08124" sboTerm="SBO:0000185" id="R_MAR08124" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -343783,7 +343730,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08124">
+            <rdf:Description rdf:about="#R_MAR08124">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/6THFtm"/>
@@ -343795,13 +343742,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02119m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02119m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02119c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02119c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08126" sboTerm="SBO:0000185" id="MAR08126" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08126" sboTerm="SBO:0000185" id="R_MAR08126" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -343809,7 +343756,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08126">
+            <rdf:Description rdf:about="#R_MAR08126">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/7DHFtm"/>
@@ -343821,13 +343768,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02104m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02104m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02104c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02104c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08128" sboTerm="SBO:0000185" id="MAR08128" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08128" sboTerm="SBO:0000185" id="R_MAR08128" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -343835,7 +343782,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08128">
+            <rdf:Description rdf:about="#R_MAR08128">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/7THFtm"/>
@@ -343847,13 +343794,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02105m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02105m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02105c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02105c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08356" sboTerm="SBO:0000185" id="MAR08356" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08356" sboTerm="SBO:0000185" id="R_MAR08356" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -343861,7 +343808,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08356">
+            <rdf:Description rdf:about="#R_MAR08356">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ACALDtm"/>
@@ -343873,13 +343820,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01249c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01249c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01249m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01249m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08365" sboTerm="SBO:0000185" id="MAR08365" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08365" sboTerm="SBO:0000185" id="R_MAR08365" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -343887,7 +343834,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08365">
+            <rdf:Description rdf:about="#R_MAR08365">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ACETONEt2m"/>
@@ -343900,18 +343847,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01256c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039i" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01256c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039i" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01256m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01256m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="hrm"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08411" sboTerm="SBO:0000185" id="MAR08411" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08411" sboTerm="SBO:0000185" id="R_MAR08411" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -343919,7 +343866,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08411">
+            <rdf:Description rdf:about="#R_MAR08411">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/O2Stm"/>
@@ -343931,13 +343878,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02631c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02631c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02631m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02631m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08438" sboTerm="SBO:0000185" id="MAR08438" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08438" sboTerm="SBO:0000185" id="R_MAR08438" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -343945,7 +343892,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08438">
+            <rdf:Description rdf:about="#R_MAR08438">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/DMHPTCRNt"/>
@@ -343957,13 +343904,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01708c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01708c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01708m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01708m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08475" sboTerm="SBO:0000185" id="MAR08475" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08475" sboTerm="SBO:0000185" id="R_MAR08475" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -343972,7 +343919,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08475">
+            <rdf:Description rdf:about="#R_MAR08475">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_8475"/>
@@ -343983,16 +343930,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01668c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01668c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01668m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01668m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Ent1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08505" sboTerm="SBO:0000185" id="MAR08505" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08505" sboTerm="SBO:0000185" id="R_MAR08505" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -344000,7 +343947,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08505">
+            <rdf:Description rdf:about="#R_MAR08505">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_8505"/>
@@ -344010,13 +343957,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02329c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02329c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02329m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02329m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08510" sboTerm="SBO:0000185" id="MAR08510" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08510" sboTerm="SBO:0000185" id="R_MAR08510" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -344024,7 +343971,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08510">
+            <rdf:Description rdf:about="#R_MAR08510">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_8510"/>
@@ -344034,13 +343981,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00168c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00168c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00168m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00168m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08513" sboTerm="SBO:0000185" id="MAR08513" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08513" sboTerm="SBO:0000185" id="R_MAR08513" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -344048,7 +343995,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08513">
+            <rdf:Description rdf:about="#R_MAR08513">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/DLNLCGCRNt"/>
@@ -344061,18 +344008,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01716c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01716c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01716m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01716m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="hrm"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08528" sboTerm="SBO:0000185" id="MAR08528" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08528" sboTerm="SBO:0000185" id="R_MAR08528" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -344080,7 +344027,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08528">
+            <rdf:Description rdf:about="#R_MAR08528">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PE_HStm"/>
@@ -344092,13 +344039,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02685c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02685c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02685m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02685m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08532" sboTerm="SBO:0000185" id="MAR08532" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08532" sboTerm="SBO:0000185" id="R_MAR08532" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -344106,7 +344053,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08532">
+            <rdf:Description rdf:about="#R_MAR08532">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FAOXC140"/>
@@ -344118,13 +344065,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01831c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01831c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01831m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01831m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08562" sboTerm="SBO:0000185" id="MAR08562" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08562" sboTerm="SBO:0000185" id="R_MAR08562" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -344132,7 +344079,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08562">
+            <rdf:Description rdf:about="#R_MAR08562">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_8562"/>
@@ -344142,13 +344089,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02168c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02168c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02168m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02168m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08627" sboTerm="SBO:0000185" id="MAR08627" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08627" sboTerm="SBO:0000185" id="R_MAR08627" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -344156,7 +344103,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08627">
+            <rdf:Description rdf:about="#R_MAR08627">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/NACASPtm"/>
@@ -344168,13 +344115,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02532m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02532m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02532c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02532c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08655" sboTerm="SBO:0000185" id="MAR08655" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08655" sboTerm="SBO:0000185" id="R_MAR08655" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -344182,7 +344129,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08655">
+            <rdf:Description rdf:about="#R_MAR08655">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CDIPTr"/>
@@ -344194,13 +344141,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01418m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01418m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01418c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01418c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08657" sboTerm="SBO:0000185" id="MAR08657" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08657" sboTerm="SBO:0000185" id="R_MAR08657" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -344208,7 +344155,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08657">
+            <rdf:Description rdf:about="#R_MAR08657">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CHOLATEt"/>
@@ -344222,13 +344169,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01513c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01513c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01513m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01513m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08680" sboTerm="SBO:0000185" id="MAR08680" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08680" sboTerm="SBO:0000185" id="R_MAR08680" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -344236,7 +344183,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08680">
+            <rdf:Description rdf:about="#R_MAR08680">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CRTSTRNtr"/>
@@ -344248,13 +344195,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01614c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01614c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01614m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01614m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08731" sboTerm="SBO:0000185" id="MAR08731" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08731" sboTerm="SBO:0000185" id="R_MAR08731" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -344262,7 +344209,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08731">
+            <rdf:Description rdf:about="#R_MAR08731">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/SARCStm"/>
@@ -344274,13 +344221,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02880c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02880c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02880m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02880m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08741" sboTerm="SBO:0000185" id="MAR08741" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08741" sboTerm="SBO:0000185" id="R_MAR08741" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -344288,7 +344235,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08741">
+            <rdf:Description rdf:about="#R_MAR08741">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FUMtm"/>
@@ -344300,18 +344247,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01862c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02949m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01862c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02949m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01862m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02949c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01862m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02949c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Dic1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08742" sboTerm="SBO:0000185" id="MAR08742" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08742" sboTerm="SBO:0000185" id="R_MAR08742" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -344319,7 +344266,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08742">
+            <rdf:Description rdf:about="#R_MAR08742">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FUMTSULtm"/>
@@ -344331,18 +344278,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01862c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02946m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01862c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02946m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01862m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02946c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01862m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02946c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Dic1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08745" sboTerm="SBO:0000185" id="MAR08745" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08745" sboTerm="SBO:0000185" id="R_MAR08745" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -344350,7 +344297,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08745">
+            <rdf:Description rdf:about="#R_MAR08745">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/THMMPtm"/>
@@ -344361,15 +344308,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02147c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02983m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02147c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02983m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02147m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02983c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02147m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02983c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08747" sboTerm="SBO:0000185" id="MAR08747" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08747" sboTerm="SBO:0000185" id="R_MAR08747" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -344377,7 +344324,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08747">
+            <rdf:Description rdf:about="#R_MAR08747">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/THMPPtm"/>
@@ -344388,15 +344335,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02147m" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02984c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02147m" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02984c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02147c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02984m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02147c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02984m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08776" sboTerm="SBO:0000185" id="MAR08776" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08776" sboTerm="SBO:0000185" id="R_MAR08776" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -344404,7 +344351,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08776">
+            <rdf:Description rdf:about="#R_MAR08776">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_8776"/>
@@ -344414,13 +344361,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02154c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02154c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02154m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02154m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08785" sboTerm="SBO:0000185" id="MAR08785" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08785" sboTerm="SBO:0000185" id="R_MAR08785" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -344428,7 +344375,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08785">
+            <rdf:Description rdf:about="#R_MAR08785">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_8785"/>
@@ -344438,13 +344385,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02165c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02165c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02165m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02165m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08848" sboTerm="SBO:0000185" id="MAR08848" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08848" sboTerm="SBO:0000185" id="R_MAR08848" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -344452,7 +344399,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08848">
+            <rdf:Description rdf:about="#R_MAR08848">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/TCYNTtm"/>
@@ -344464,13 +344411,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02986m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02986m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02986c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02986c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08890" sboTerm="SBO:0000185" id="MAR08890" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08890" sboTerm="SBO:0000185" id="R_MAR08890" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -344478,7 +344425,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08890">
+            <rdf:Description rdf:about="#R_MAR08890">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GLYBtm"/>
@@ -344490,13 +344437,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01393c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01393c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01393m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01393m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08891" sboTerm="SBO:0000185" id="MAR08891" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08891" sboTerm="SBO:0000185" id="R_MAR08891" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -344504,7 +344451,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08891">
+            <rdf:Description rdf:about="#R_MAR08891">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GLYC3Ptm"/>
@@ -344517,13 +344464,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02914c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02914c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02914m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02914m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08910" sboTerm="SBO:0000185" id="MAR08910" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08910" sboTerm="SBO:0000185" id="R_MAR08910" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -344531,7 +344478,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08910">
+            <rdf:Description rdf:about="#R_MAR08910">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/INStm"/>
@@ -344543,16 +344490,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02170c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02170c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02170m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02170m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Ent1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR09174" sboTerm="SBO:0000185" id="MAR09174" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09174" sboTerm="SBO:0000185" id="R_MAR09174" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -344560,7 +344507,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09174">
+            <rdf:Description rdf:about="#R_MAR09174">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_9174"/>
@@ -344570,13 +344517,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02191c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02191c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02191m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02191m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09194" sboTerm="SBO:0000185" id="MAR09194" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09194" sboTerm="SBO:0000185" id="R_MAR09194" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -344584,7 +344531,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09194">
+            <rdf:Description rdf:about="#R_MAR09194">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/AGRMtm"/>
@@ -344594,13 +344541,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01303c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01303c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01303m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01303m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09675" sboTerm="SBO:0000185" id="MAR09675" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09675" sboTerm="SBO:0000185" id="R_MAR09675" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -344608,7 +344555,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09675">
+            <rdf:Description rdf:about="#R_MAR09675">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/GLYCLTtm"/>
@@ -344620,13 +344567,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01998m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01998m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01998c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01998c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09676" sboTerm="SBO:0000185" id="MAR09676" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09676" sboTerm="SBO:0000185" id="R_MAR09676" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -344634,7 +344581,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09676">
+            <rdf:Description rdf:about="#R_MAR09676">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_9676"/>
@@ -344644,13 +344591,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02169m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02169m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02169c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02169c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09677" sboTerm="SBO:0000185" id="MAR09677" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09677" sboTerm="SBO:0000185" id="R_MAR09677" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -344658,7 +344605,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09677">
+            <rdf:Description rdf:about="#R_MAR09677">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_9677"/>
@@ -344668,13 +344615,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02320m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02320m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02320c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02320c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09014" sboTerm="SBO:0000185" id="MAR09014" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09014" sboTerm="SBO:0000185" id="R_MAR09014" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -344682,7 +344629,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09014">
+            <rdf:Description rdf:about="#R_MAR09014">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_9014"/>
@@ -344692,13 +344639,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02026c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02026x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026x" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR00707" sboTerm="SBO:0000185" id="MAR00707" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00707" sboTerm="SBO:0000185" id="R_MAR00707" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -344707,7 +344654,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00707">
+            <rdf:Description rdf:about="#R_MAR00707">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR95616"/>
@@ -344719,13 +344666,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02017x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02017x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02017c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02017c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR00713" sboTerm="SBO:0000185" id="MAR00713" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00713" sboTerm="SBO:0000185" id="R_MAR00713" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -344734,7 +344681,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00713">
+            <rdf:Description rdf:about="#R_MAR00713">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR95658"/>
@@ -344745,18 +344692,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01306c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02183x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01306c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02183x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01306x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02183c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01306x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02183c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="sima"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01104" sboTerm="SBO:0000185" id="MAR01104" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01104" sboTerm="SBO:0000185" id="R_MAR01104" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -344764,7 +344711,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01104">
+            <rdf:Description rdf:about="#R_MAR01104">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_1104"/>
@@ -344774,13 +344721,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02364c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02364c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02364x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02364x" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01135" sboTerm="SBO:0000185" id="MAR01135" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01135" sboTerm="SBO:0000185" id="R_MAR01135" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -344788,7 +344735,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01135">
+            <rdf:Description rdf:about="#R_MAR01135">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_1135"/>
@@ -344798,13 +344745,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00585c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00585c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00585x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00585x" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01144" sboTerm="SBO:0000185" id="MAR01144" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01144" sboTerm="SBO:0000185" id="R_MAR01144" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -344812,7 +344759,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01144">
+            <rdf:Description rdf:about="#R_MAR01144">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_1144"/>
@@ -344822,13 +344769,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01124c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01124c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01124x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01124x" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01172" sboTerm="SBO:0000185" id="MAR01172" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01172" sboTerm="SBO:0000185" id="R_MAR01172" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -344836,7 +344783,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01172">
+            <rdf:Description rdf:about="#R_MAR01172">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_1172"/>
@@ -344846,13 +344793,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00835c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00835c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00835x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00835x" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01188" sboTerm="SBO:0000185" id="MAR01188" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01188" sboTerm="SBO:0000185" id="R_MAR01188" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -344860,7 +344807,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01188">
+            <rdf:Description rdf:about="#R_MAR01188">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_1188"/>
@@ -344870,13 +344817,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01118c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01118c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01118x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01118x" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01214" sboTerm="SBO:0000185" id="MAR01214" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01214" sboTerm="SBO:0000185" id="R_MAR01214" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -344884,7 +344831,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01214">
+            <rdf:Description rdf:about="#R_MAR01214">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_1214"/>
@@ -344894,13 +344841,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00837c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00837c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00837x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00837x" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01242" sboTerm="SBO:0000185" id="MAR01242" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01242" sboTerm="SBO:0000185" id="R_MAR01242" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -344908,7 +344855,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01242">
+            <rdf:Description rdf:about="#R_MAR01242">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_1242"/>
@@ -344918,13 +344865,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00583c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00583c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00583x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00583x" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01268" sboTerm="SBO:0000185" id="MAR01268" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01268" sboTerm="SBO:0000185" id="R_MAR01268" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -344932,7 +344879,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01268">
+            <rdf:Description rdf:about="#R_MAR01268">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_1268"/>
@@ -344942,13 +344889,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00258c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00258c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00258x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00258x" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01283" sboTerm="SBO:0000185" id="MAR01283" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01283" sboTerm="SBO:0000185" id="R_MAR01283" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -344956,7 +344903,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01283">
+            <rdf:Description rdf:about="#R_MAR01283">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_1283"/>
@@ -344966,13 +344913,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00252c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00252c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00252x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00252x" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01286" sboTerm="SBO:0000185" id="MAR01286" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01286" sboTerm="SBO:0000185" id="R_MAR01286" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -344980,7 +344927,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01286">
+            <rdf:Description rdf:about="#R_MAR01286">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_1286"/>
@@ -344990,13 +344937,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02369c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02369c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02369x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02369x" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01443" sboTerm="SBO:0000185" id="MAR01443" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01443" sboTerm="SBO:0000185" id="R_MAR01443" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -345005,7 +344952,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01443">
+            <rdf:Description rdf:about="#R_MAR01443">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/r0954"/>
@@ -345017,16 +344964,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00167c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00167c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00167x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00167x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="hrm"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02067" sboTerm="SBO:0000185" id="MAR02067" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02067" sboTerm="SBO:0000185" id="R_MAR02067" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -345034,7 +344981,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02067">
+            <rdf:Description rdf:about="#R_MAR02067">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_2067"/>
@@ -345044,13 +344991,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01791c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01791c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01791x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01791x" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR02082" sboTerm="SBO:0000185" id="MAR02082" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02082" sboTerm="SBO:0000185" id="R_MAR02082" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -345058,7 +345005,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02082">
+            <rdf:Description rdf:about="#R_MAR02082">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_2082"/>
@@ -345068,13 +345015,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01793c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01793c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01793x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01793x" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR02093" sboTerm="SBO:0000185" id="MAR02093" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02093" sboTerm="SBO:0000185" id="R_MAR02093" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -345082,7 +345029,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02093">
+            <rdf:Description rdf:about="#R_MAR02093">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_2093"/>
@@ -345092,13 +345039,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00412c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00412c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00412x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00412x" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR02104" sboTerm="SBO:0000185" id="MAR02104" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02104" sboTerm="SBO:0000185" id="R_MAR02104" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -345106,7 +345053,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02104">
+            <rdf:Description rdf:about="#R_MAR02104">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_2104"/>
@@ -345116,13 +345063,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00410c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00410c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00410x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00410x" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR02407" sboTerm="SBO:0000185" id="MAR02407" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02407" sboTerm="SBO:0000185" id="R_MAR02407" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -345130,7 +345077,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02407">
+            <rdf:Description rdf:about="#R_MAR02407">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/TETPENT6COAtx"/>
@@ -345141,16 +345088,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00110c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00110c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00110x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00110x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Abcd1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02509" sboTerm="SBO:0000185" id="MAR02509" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02509" sboTerm="SBO:0000185" id="R_MAR02509" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -345158,7 +345105,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02509">
+            <rdf:Description rdf:about="#R_MAR02509">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/TETHEX3COAtx"/>
@@ -345169,16 +345116,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00113c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00113c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00113x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00113x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Abcd1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02547" sboTerm="SBO:0000185" id="MAR02547" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02547" sboTerm="SBO:0000185" id="R_MAR02547" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -345186,7 +345133,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02547">
+            <rdf:Description rdf:about="#R_MAR02547">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_2547"/>
@@ -345196,13 +345143,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01125c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01125c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01125x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01125x" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR02575" sboTerm="SBO:0000185" id="MAR02575" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02575" sboTerm="SBO:0000185" id="R_MAR02575" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -345210,7 +345157,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02575">
+            <rdf:Description rdf:about="#R_MAR02575">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_2575"/>
@@ -345220,13 +345167,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01784c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01784c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01784x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01784x" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03007" sboTerm="SBO:0000185" id="MAR03007" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03007" sboTerm="SBO:0000185" id="R_MAR03007" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -345235,7 +345182,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03007">
+            <rdf:Description rdf:about="#R_MAR03007">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR101277"/>
@@ -345247,18 +345194,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02403c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02403c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02403x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02403x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="hrm"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03008" sboTerm="SBO:0000185" id="MAR03008" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03008" sboTerm="SBO:0000185" id="R_MAR03008" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -345267,7 +345214,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03008">
+            <rdf:Description rdf:about="#R_MAR03008">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106312"/>
@@ -345279,18 +345226,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02774c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02774c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02774x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02774x" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03011" sboTerm="SBO:0000185" id="MAR03011" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03011" sboTerm="SBO:0000185" id="R_MAR03011" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -345299,7 +345246,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03011">
+            <rdf:Description rdf:about="#R_MAR03011">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/C16txc"/>
@@ -345310,18 +345257,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02678c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02678c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02678x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02678x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03013" sboTerm="SBO:0000185" id="MAR03013" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03013" sboTerm="SBO:0000185" id="R_MAR03013" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -345330,7 +345277,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03013">
+            <rdf:Description rdf:about="#R_MAR03013">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106314"/>
@@ -345342,18 +345289,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02391c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02391c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02391x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02391x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03014" sboTerm="SBO:0000185" id="MAR03014" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03014" sboTerm="SBO:0000185" id="R_MAR03014" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -345362,7 +345309,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03014">
+            <rdf:Description rdf:about="#R_MAR03014">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106315"/>
@@ -345374,18 +345321,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01364c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01364c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01364x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01364x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03017" sboTerm="SBO:0000185" id="MAR03017" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03017" sboTerm="SBO:0000185" id="R_MAR03017" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -345394,7 +345341,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03017">
+            <rdf:Description rdf:about="#R_MAR03017">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_3017"/>
@@ -345405,18 +345352,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00018c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00018c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00018x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00018x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03018" sboTerm="SBO:0000185" id="MAR03018" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03018" sboTerm="SBO:0000185" id="R_MAR03018" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -345424,7 +345371,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03018">
+            <rdf:Description rdf:about="#R_MAR03018">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_3018"/>
@@ -345435,16 +345382,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03047c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03047c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03047x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03047x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Abcd1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03019" sboTerm="SBO:0000185" id="MAR03019" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03019" sboTerm="SBO:0000185" id="R_MAR03019" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -345452,7 +345399,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03019">
+            <rdf:Description rdf:about="#R_MAR03019">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/LGNCCOAtx"/>
@@ -345463,16 +345410,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02971c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02971c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02971x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02971x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Abcd1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03020" sboTerm="SBO:0000185" id="MAR03020" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03020" sboTerm="SBO:0000185" id="R_MAR03020" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -345480,7 +345427,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03020">
+            <rdf:Description rdf:about="#R_MAR03020">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/NRVNCCOAtx"/>
@@ -345491,16 +345438,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00025c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00025c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00025x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00025x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Abcd1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03021" sboTerm="SBO:0000185" id="MAR03021" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03021" sboTerm="SBO:0000185" id="R_MAR03021" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -345508,7 +345455,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03021">
+            <rdf:Description rdf:about="#R_MAR03021">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_3021"/>
@@ -345519,16 +345466,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00317c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00317c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00317x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00317x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Abcd1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03022" sboTerm="SBO:0000185" id="MAR03022" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03022" sboTerm="SBO:0000185" id="R_MAR03022" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -345537,7 +345484,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03022">
+            <rdf:Description rdf:about="#R_MAR03022">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR124347"/>
@@ -345550,16 +345497,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02110c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02110c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02110x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02110x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Abcd1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03023" sboTerm="SBO:0000185" id="MAR03023" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03023" sboTerm="SBO:0000185" id="R_MAR03023" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -345567,7 +345514,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03023">
+            <rdf:Description rdf:about="#R_MAR03023">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_3023"/>
@@ -345578,16 +345525,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02112c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02112c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02112x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02112x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Abcd1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03024" sboTerm="SBO:0000185" id="MAR03024" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03024" sboTerm="SBO:0000185" id="R_MAR03024" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -345595,7 +345542,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03024">
+            <rdf:Description rdf:about="#R_MAR03024">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/TETPENT3COAtx"/>
@@ -345606,16 +345553,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00134c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00134c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00134x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00134x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Abcd1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03025" sboTerm="SBO:0000185" id="MAR03025" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03025" sboTerm="SBO:0000185" id="R_MAR03025" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -345623,7 +345570,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03025">
+            <rdf:Description rdf:about="#R_MAR03025">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/TETTET6COAtx"/>
@@ -345634,16 +345581,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00131c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00131c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00131x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00131x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Abcd1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03026" sboTerm="SBO:0000185" id="MAR03026" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03026" sboTerm="SBO:0000185" id="R_MAR03026" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -345652,7 +345599,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03026">
+            <rdf:Description rdf:about="#R_MAR03026">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/CRNrtx"/>
@@ -345663,16 +345610,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02348x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Orct"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03473" sboTerm="SBO:0000185" id="MAR03473" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03473" sboTerm="SBO:0000185" id="R_MAR03473" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -345681,7 +345628,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03473">
+            <rdf:Description rdf:about="#R_MAR03473">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR96124"/>
@@ -345694,18 +345641,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01334x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01334c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="PMP34"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03848" sboTerm="SBO:0000185" id="MAR03848" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03848" sboTerm="SBO:0000185" id="R_MAR03848" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -345713,7 +345660,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03848">
+            <rdf:Description rdf:about="#R_MAR03848">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GLYtp"/>
@@ -345725,13 +345672,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01986c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01986x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986x" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03850" sboTerm="SBO:0000185" id="MAR03850" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03850" sboTerm="SBO:0000185" id="R_MAR03850" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -345739,7 +345686,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03850">
+            <rdf:Description rdf:about="#R_MAR03850">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/SARCStp"/>
@@ -345750,13 +345697,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02880c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02880c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02880x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02880x" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03867" sboTerm="SBO:0000185" id="MAR03867" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03867" sboTerm="SBO:0000185" id="R_MAR03867" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -345764,7 +345711,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03867">
+            <rdf:Description rdf:about="#R_MAR03867">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/HMR_3867"/>
@@ -345775,13 +345722,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01831c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01831c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01831x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01831x" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03947" sboTerm="SBO:0000185" id="MAR03947" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03947" sboTerm="SBO:0000185" id="R_MAR03947" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -345789,7 +345736,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03947">
+            <rdf:Description rdf:about="#R_MAR03947">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/H2O2tp"/>
@@ -345801,13 +345748,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02041c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02041x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041x" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03948" sboTerm="SBO:0000185" id="MAR03948" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03948" sboTerm="SBO:0000185" id="R_MAR03948" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -345815,7 +345762,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03948">
+            <rdf:Description rdf:about="#R_MAR03948">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/IPDPtx"/>
@@ -345826,13 +345773,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02187c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02187c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02187x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02187x" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR04393" sboTerm="SBO:0000185" id="MAR04393" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04393" sboTerm="SBO:0000185" id="R_MAR04393" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -345841,7 +345788,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04393">
+            <rdf:Description rdf:about="#R_MAR04393">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR97366"/>
@@ -345852,13 +345799,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01690c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01690c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01690x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01690x" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR04468" sboTerm="SBO:0000185" id="MAR04468" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04468" sboTerm="SBO:0000185" id="R_MAR04468" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -345866,7 +345813,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04468">
+            <rdf:Description rdf:about="#R_MAR04468">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/SERtp"/>
@@ -345878,13 +345825,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02896c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02896c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02896x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02896x" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR04469" sboTerm="SBO:0000185" id="MAR04469" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04469" sboTerm="SBO:0000185" id="R_MAR04469" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -345892,7 +345839,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04469">
+            <rdf:Description rdf:about="#R_MAR04469">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/HPYRtp"/>
@@ -345904,13 +345851,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02154c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02154c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02154x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02154x" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR04647" sboTerm="SBO:0000185" id="MAR04647" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04647" sboTerm="SBO:0000185" id="R_MAR04647" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -345918,7 +345865,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04647">
+            <rdf:Description rdf:about="#R_MAR04647">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/XANtx"/>
@@ -345928,13 +345875,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03148c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03148c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03148x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03148x" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR04790" sboTerm="SBO:0000185" id="MAR04790" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04790" sboTerm="SBO:0000185" id="R_MAR04790" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -345942,7 +345889,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04790">
+            <rdf:Description rdf:about="#R_MAR04790">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_4790"/>
@@ -345952,13 +345899,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01307c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01307c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01307x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01307x" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR04890" sboTerm="SBO:0000185" id="MAR04890" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04890" sboTerm="SBO:0000185" id="R_MAR04890" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -345967,7 +345914,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04890">
+            <rdf:Description rdf:about="#R_MAR04890">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/H2Otp"/>
@@ -345981,13 +345928,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040x" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR04900" sboTerm="SBO:0000185" id="MAR04900" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04900" sboTerm="SBO:0000185" id="R_MAR04900" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -345995,7 +345942,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04900">
+            <rdf:Description rdf:about="#R_MAR04900">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/O2tp"/>
@@ -346007,13 +345954,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02630x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630x" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR04908" sboTerm="SBO:0000185" id="MAR04908" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04908" sboTerm="SBO:0000185" id="R_MAR04908" name="ATP:ADP phosphatransferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -346022,7 +345969,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04908">
+            <rdf:Description rdf:about="#R_MAR04908">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/r0860"/>
@@ -346037,15 +345984,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR04915" sboTerm="SBO:0000185" id="MAR04915" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04915" sboTerm="SBO:0000185" id="R_MAR04915" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -346054,7 +346001,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04915">
+            <rdf:Description rdf:about="#R_MAR04915">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/COAtp"/>
@@ -346066,13 +346013,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01597x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597x" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR04924" sboTerm="SBO:0000185" id="MAR04924" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04924" sboTerm="SBO:0000185" id="R_MAR04924" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -346081,7 +346028,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04924">
+            <rdf:Description rdf:about="#R_MAR04924">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CO2tp"/>
@@ -346093,13 +346040,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01596c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01596c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01596x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01596x" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR04930" sboTerm="SBO:0000185" id="MAR04930" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04930" sboTerm="SBO:0000185" id="R_MAR04930" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -346108,7 +346055,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04930">
+            <rdf:Description rdf:about="#R_MAR04930">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PYRt2p"/>
@@ -346124,12 +346071,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02819c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02819c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02819x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02819x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -346139,7 +346086,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04945" sboTerm="SBO:0000185" id="MAR04945" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04945" sboTerm="SBO:0000185" id="R_MAR04945" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -346148,7 +346095,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04945">
+            <rdf:Description rdf:about="#R_MAR04945">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/FORMCOAtx"/>
@@ -346158,13 +346105,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01836c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01836c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01836x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01836x" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05344" sboTerm="SBO:0000185" id="MAR05344" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05344" sboTerm="SBO:0000185" id="R_MAR05344" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -346173,7 +346120,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05344">
+            <rdf:Description rdf:about="#R_MAR05344">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PItx"/>
@@ -346187,15 +346134,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751x" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05346" sboTerm="SBO:0000185" id="MAR05346" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05346" sboTerm="SBO:0000185" id="R_MAR05346" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -346204,7 +346151,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05346">
+            <rdf:Description rdf:about="#R_MAR05346">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PPItx"/>
@@ -346216,13 +346163,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02759x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759x" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05362" sboTerm="SBO:0000185" id="MAR05362" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05362" sboTerm="SBO:0000185" id="R_MAR05362" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -346230,7 +346177,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05362">
+            <rdf:Description rdf:about="#R_MAR05362">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR103102"/>
@@ -346241,13 +346188,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02774c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02774c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02774x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02774x" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05414" sboTerm="SBO:0000185" id="MAR05414" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05414" sboTerm="SBO:0000185" id="R_MAR05414" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -346256,7 +346203,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05414">
+            <rdf:Description rdf:about="#R_MAR05414">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR100308"/>
@@ -346268,13 +346215,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02914c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02914c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02914x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02914x" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05453" sboTerm="SBO:0000185" id="MAR05453" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05453" sboTerm="SBO:0000185" id="R_MAR05453" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -346282,7 +346229,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05453">
+            <rdf:Description rdf:about="#R_MAR05453">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/NAtx"/>
@@ -346294,13 +346241,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02519x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519x" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR06928" sboTerm="SBO:0000185" id="MAR06928" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06928" sboTerm="SBO:0000185" id="R_MAR06928" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -346308,7 +346255,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06928">
+            <rdf:Description rdf:about="#R_MAR06928">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_6928"/>
@@ -346318,13 +346265,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02926c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02926c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02926x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02926x" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR06937" sboTerm="SBO:0000185" id="MAR06937" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06937" sboTerm="SBO:0000185" id="R_MAR06937" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -346332,7 +346279,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06937">
+            <rdf:Description rdf:about="#R_MAR06937">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_6937"/>
@@ -346344,13 +346291,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02923c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02923c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02923x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02923x" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR06986" sboTerm="SBO:0000185" id="MAR06986" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06986" sboTerm="SBO:0000185" id="R_MAR06986" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -346358,7 +346305,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06986">
+            <rdf:Description rdf:about="#R_MAR06986">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_6986"/>
@@ -346368,13 +346315,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02183c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02183c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02183x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02183x" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR06987" sboTerm="SBO:0000185" id="MAR06987" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06987" sboTerm="SBO:0000185" id="R_MAR06987" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -346382,7 +346329,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06987">
+            <rdf:Description rdf:about="#R_MAR06987">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/SUCCtp"/>
@@ -346393,13 +346340,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02943c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02943c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02943x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02943x" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07590" sboTerm="SBO:0000185" id="MAR07590" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07590" sboTerm="SBO:0000185" id="R_MAR07590" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -346407,7 +346354,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07590">
+            <rdf:Description rdf:about="#R_MAR07590">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ADHAPtx"/>
@@ -346419,13 +346366,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01278c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01278c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01278x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01278x" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07596" sboTerm="SBO:0000185" id="MAR07596" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07596" sboTerm="SBO:0000185" id="R_MAR07596" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -346433,7 +346380,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07596">
+            <rdf:Description rdf:about="#R_MAR07596">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/AGPex"/>
@@ -346445,13 +346392,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01311c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01311c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01311x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01311x" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07640" sboTerm="SBO:0000185" id="MAR07640" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07640" sboTerm="SBO:0000185" id="R_MAR07640" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -346459,7 +346406,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07640">
+            <rdf:Description rdf:about="#R_MAR07640">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ASPDxt"/>
@@ -346471,13 +346418,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01641c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01641c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01641x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01641x" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07646" sboTerm="SBO:0000185" id="MAR07646" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07646" sboTerm="SBO:0000185" id="R_MAR07646" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -346485,7 +346432,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07646">
+            <rdf:Description rdf:about="#R_MAR07646">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/DALAxt"/>
@@ -346497,16 +346444,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01638c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01638c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01638x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01638x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG13384"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07705" sboTerm="SBO:0000185" id="MAR07705" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07705" sboTerm="SBO:0000185" id="R_MAR07705" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -346514,7 +346461,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07705">
+            <rdf:Description rdf:about="#R_MAR07705">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GLYCLTtp"/>
@@ -346526,13 +346473,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01998c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01998c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01998x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01998x" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07707" sboTerm="SBO:0000185" id="MAR07707" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07707" sboTerm="SBO:0000185" id="R_MAR07707" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -346540,7 +346487,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07707">
+            <rdf:Description rdf:about="#R_MAR07707">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GLXtp"/>
@@ -346552,13 +346499,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02007c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02007c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02007x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02007x" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07771" sboTerm="SBO:0000185" id="MAR07771" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07771" sboTerm="SBO:0000185" id="R_MAR07771" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -346566,7 +346513,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07771">
+            <rdf:Description rdf:about="#R_MAR07771">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/NADtpu"/>
@@ -346578,13 +346525,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02552x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02552c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07775" sboTerm="SBO:0000185" id="MAR07775" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07775" sboTerm="SBO:0000185" id="R_MAR07775" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -346592,7 +346539,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07775">
+            <rdf:Description rdf:about="#R_MAR07775">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/NADHtpu"/>
@@ -346605,13 +346552,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02553c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02553x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553x" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07777" sboTerm="SBO:0000185" id="MAR07777" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07777" sboTerm="SBO:0000185" id="R_MAR07777" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -346619,7 +346566,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07777">
+            <rdf:Description rdf:about="#R_MAR07777">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/NADPtxu"/>
@@ -346631,13 +346578,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02554x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07779" sboTerm="SBO:0000185" id="MAR07779" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07779" sboTerm="SBO:0000185" id="R_MAR07779" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -346645,7 +346592,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07779">
+            <rdf:Description rdf:about="#R_MAR07779">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/NADPHtxu"/>
@@ -346657,13 +346604,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02555x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555x" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07782" sboTerm="SBO:0000185" id="MAR07782" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07782" sboTerm="SBO:0000185" id="R_MAR07782" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -346671,7 +346618,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07782">
+            <rdf:Description rdf:about="#R_MAR07782">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ADPtx"/>
@@ -346683,13 +346630,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285x" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07783" sboTerm="SBO:0000185" id="MAR07783" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07783" sboTerm="SBO:0000185" id="R_MAR07783" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -346697,7 +346644,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07783">
+            <rdf:Description rdf:about="#R_MAR07783">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/AMPtp"/>
@@ -346709,13 +346656,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01334c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01334x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334x" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07785" sboTerm="SBO:0000185" id="MAR07785" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07785" sboTerm="SBO:0000185" id="R_MAR07785" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -346723,7 +346670,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07785">
+            <rdf:Description rdf:about="#R_MAR07785">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ATPtx"/>
@@ -346735,13 +346682,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01371x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371x" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07788" sboTerm="SBO:0000185" id="MAR07788" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07788" sboTerm="SBO:0000185" id="R_MAR07788" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -346749,7 +346696,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07788">
+            <rdf:Description rdf:about="#R_MAR07788">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FADH2tx"/>
@@ -346761,13 +346708,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01803c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01803c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01803x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01803x" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07790" sboTerm="SBO:0000185" id="MAR07790" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07790" sboTerm="SBO:0000185" id="R_MAR07790" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -346775,7 +346722,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07790">
+            <rdf:Description rdf:about="#R_MAR07790">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FADtx"/>
@@ -346787,13 +346734,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01802c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01802c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01802x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01802x" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07797" sboTerm="SBO:0000185" id="MAR07797" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07797" sboTerm="SBO:0000185" id="R_MAR07797" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -346801,7 +346748,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07797">
+            <rdf:Description rdf:about="#R_MAR07797">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/AKGtp"/>
@@ -346813,13 +346760,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01306c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01306c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01306x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01306x" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08016" sboTerm="SBO:0000185" id="MAR08016" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08016" sboTerm="SBO:0000185" id="R_MAR08016" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -346827,7 +346774,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08016">
+            <rdf:Description rdf:about="#R_MAR08016">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/LYStip"/>
@@ -346839,13 +346786,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02426c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02426c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02426x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02426x" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08020" sboTerm="SBO:0000185" id="MAR08020" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08020" sboTerm="SBO:0000185" id="R_MAR08020" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -346853,7 +346800,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08020">
+            <rdf:Description rdf:about="#R_MAR08020">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/THP2Ctp"/>
@@ -346865,13 +346812,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00556c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00556c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00556x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00556x" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08359" sboTerm="SBO:0000185" id="MAR08359" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08359" sboTerm="SBO:0000185" id="R_MAR08359" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -346879,7 +346826,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08359">
+            <rdf:Description rdf:about="#R_MAR08359">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ACALDtx"/>
@@ -346891,13 +346838,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01249c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01249c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01249x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01249x" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08414" sboTerm="SBO:0000185" id="MAR08414" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08414" sboTerm="SBO:0000185" id="R_MAR08414" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -346905,7 +346852,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08414">
+            <rdf:Description rdf:about="#R_MAR08414">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/O2Stx"/>
@@ -346917,13 +346864,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02631c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02631c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02631x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02631x" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08754" sboTerm="SBO:0000185" id="MAR08754" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08754" sboTerm="SBO:0000185" id="R_MAR08754" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -346931,7 +346878,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08754">
+            <rdf:Description rdf:about="#R_MAR08754">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/HXANtx"/>
@@ -346943,13 +346890,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02159c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02159c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02159x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02159x" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08756" sboTerm="SBO:0000185" id="MAR08756" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08756" sboTerm="SBO:0000185" id="R_MAR08756" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -346957,7 +346904,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08756">
+            <rdf:Description rdf:about="#R_MAR08756">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_10fthf5glu_e"/>
@@ -346970,13 +346917,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01796c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01796c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01796x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01796x" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08860" sboTerm="SBO:0000185" id="MAR08860" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08860" sboTerm="SBO:0000185" id="R_MAR08860" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -346984,7 +346931,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08860">
+            <rdf:Description rdf:about="#R_MAR08860">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/URATEtx"/>
@@ -346996,13 +346943,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03120x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03120x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03120c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03120c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08926" sboTerm="SBO:0000185" id="MAR08926" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08926" sboTerm="SBO:0000185" id="R_MAR08926" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -347010,7 +346957,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08926">
+            <rdf:Description rdf:about="#R_MAR08926">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/NH4tp"/>
@@ -347021,13 +346968,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02578c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02578c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02578x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02578x" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09179" sboTerm="SBO:0000185" id="MAR09179" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09179" sboTerm="SBO:0000185" id="R_MAR09179" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -347035,7 +346982,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09179">
+            <rdf:Description rdf:about="#R_MAR09179">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_9179"/>
@@ -347045,13 +346992,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01740c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01740c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01740x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01740x" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09181" sboTerm="SBO:0000185" id="MAR09181" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09181" sboTerm="SBO:0000185" id="R_MAR09181" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -347059,7 +347006,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09181">
+            <rdf:Description rdf:about="#R_MAR09181">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/ARG_Dtx"/>
@@ -347069,13 +347016,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01640c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01640c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01640x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01640x" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09678" sboTerm="SBO:0000185" id="MAR09678" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09678" sboTerm="SBO:0000185" id="R_MAR09678" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -347083,7 +347030,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09678">
+            <rdf:Description rdf:about="#R_MAR09678">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_9678"/>
@@ -347093,13 +347040,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02674x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02674x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02674c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02674c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09679" sboTerm="SBO:0000185" id="MAR09679" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09679" sboTerm="SBO:0000185" id="R_MAR09679" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -347107,7 +347054,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09679">
+            <rdf:Description rdf:about="#R_MAR09679">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_9679"/>
@@ -347119,13 +347066,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01252x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01252x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01252c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01252c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09680" sboTerm="SBO:0000185" id="MAR09680" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09680" sboTerm="SBO:0000185" id="R_MAR09680" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -347133,7 +347080,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09680">
+            <rdf:Description rdf:about="#R_MAR09680">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_9680"/>
@@ -347143,13 +347090,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02633x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02633x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02633c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02633c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09017" sboTerm="SBO:0000185" id="MAR09017" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09017" sboTerm="SBO:0000185" id="R_MAR09017" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -347157,7 +347104,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09017">
+            <rdf:Description rdf:about="#R_MAR09017">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_9017"/>
@@ -347167,13 +347114,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02555n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555n" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR00984" sboTerm="SBO:0000185" id="MAR00984" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00984" sboTerm="SBO:0000185" id="R_MAR00984" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -347181,7 +347128,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00984">
+            <rdf:Description rdf:about="#R_MAR00984">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_0984"/>
@@ -347191,13 +347138,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01362c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01362c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01362n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01362n" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01089" sboTerm="SBO:0000185" id="MAR01089" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01089" sboTerm="SBO:0000185" id="R_MAR01089" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -347205,7 +347152,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01089">
+            <rdf:Description rdf:about="#R_MAR01089">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_1089"/>
@@ -347215,13 +347162,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02369c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02369c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02369n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02369n" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01090" sboTerm="SBO:0000185" id="MAR01090" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01090" sboTerm="SBO:0000185" id="R_MAR01090" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -347229,7 +347176,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01090">
+            <rdf:Description rdf:about="#R_MAR01090">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ACCOAtn"/>
@@ -347241,13 +347188,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01261c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261n" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01094" sboTerm="SBO:0000185" id="MAR01094" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01094" sboTerm="SBO:0000185" id="R_MAR01094" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -347255,7 +347202,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01094">
+            <rdf:Description rdf:about="#R_MAR01094">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_1094"/>
@@ -347265,13 +347212,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02362c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02362c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02362n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02362n" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01095" sboTerm="SBO:0000185" id="MAR01095" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01095" sboTerm="SBO:0000185" id="R_MAR01095" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -347279,7 +347226,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01095">
+            <rdf:Description rdf:about="#R_MAR01095">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_1095"/>
@@ -347291,13 +347238,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039n" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR02564" sboTerm="SBO:0000185" id="MAR02564" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02564" sboTerm="SBO:0000185" id="R_MAR02564" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -347305,7 +347252,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02564">
+            <rdf:Description rdf:about="#R_MAR02564">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_2564"/>
@@ -347315,13 +347262,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01784c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01784c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01784n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01784n" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR04274" sboTerm="SBO:0000185" id="MAR04274" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04274" sboTerm="SBO:0000185" id="R_MAR04274" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -347329,7 +347276,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04274">
+            <rdf:Description rdf:about="#R_MAR04274">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/DNADtn"/>
@@ -347341,13 +347288,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01646c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01646c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01646n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01646n" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR04275" sboTerm="SBO:0000185" id="MAR04275" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04275" sboTerm="SBO:0000185" id="R_MAR04275" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -347355,7 +347302,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04275">
+            <rdf:Description rdf:about="#R_MAR04275">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/NICRNTtn"/>
@@ -347367,13 +347314,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02585c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02585c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02585n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02585n" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR04277" sboTerm="SBO:0000185" id="MAR04277" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04277" sboTerm="SBO:0000185" id="R_MAR04277" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -347381,7 +347328,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04277">
+            <rdf:Description rdf:about="#R_MAR04277">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/NH4tn"/>
@@ -347392,13 +347339,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02578c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02578c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02578n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02578n" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR04535" sboTerm="SBO:0000185" id="MAR04535" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04535" sboTerm="SBO:0000185" id="R_MAR04535" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -347406,7 +347353,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04535">
+            <rdf:Description rdf:about="#R_MAR04535">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CMPACNAtn"/>
@@ -347418,16 +347365,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01592c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01592c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01592n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01592n" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Ugalt"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04538" sboTerm="SBO:0000185" id="MAR04538" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04538" sboTerm="SBO:0000185" id="R_MAR04538" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -347435,7 +347382,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04538">
+            <rdf:Description rdf:about="#R_MAR04538">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_4538"/>
@@ -347445,13 +347392,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00965c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00965c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00965n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00965n" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR04893" sboTerm="SBO:0000185" id="MAR04893" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04893" sboTerm="SBO:0000185" id="R_MAR04893" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -347459,7 +347406,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04893">
+            <rdf:Description rdf:about="#R_MAR04893">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/H2Otn"/>
@@ -347473,13 +347420,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040n" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR04904" sboTerm="SBO:0000185" id="MAR04904" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04904" sboTerm="SBO:0000185" id="R_MAR04904" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -347487,7 +347434,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04904">
+            <rdf:Description rdf:about="#R_MAR04904">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/O2tn"/>
@@ -347497,13 +347444,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02630n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630n" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR04916" sboTerm="SBO:0000185" id="MAR04916" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04916" sboTerm="SBO:0000185" id="R_MAR04916" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -347512,7 +347459,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04916">
+            <rdf:Description rdf:about="#R_MAR04916">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/COAtn"/>
@@ -347522,13 +347469,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01597n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597n" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05422" sboTerm="SBO:0000185" id="MAR05422" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05422" sboTerm="SBO:0000185" id="R_MAR05422" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -347536,7 +347483,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05422">
+            <rdf:Description rdf:about="#R_MAR05422">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR103112"/>
@@ -347547,13 +347494,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02759n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759n" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05423" sboTerm="SBO:0000185" id="MAR05423" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05423" sboTerm="SBO:0000185" id="R_MAR05423" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -347561,7 +347508,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05423">
+            <rdf:Description rdf:about="#R_MAR05423">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CTPtn"/>
@@ -347573,13 +347520,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01623c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01623c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01623n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01623n" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05424" sboTerm="SBO:0000185" id="MAR05424" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05424" sboTerm="SBO:0000185" id="R_MAR05424" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -347587,7 +347534,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05424">
+            <rdf:Description rdf:about="#R_MAR05424">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ACNAMtn"/>
@@ -347601,13 +347548,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02543c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02543c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02543n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02543n" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR06617" sboTerm="SBO:0000185" id="MAR06617" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06617" sboTerm="SBO:0000185" id="R_MAR06617" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -347615,7 +347562,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06617">
+            <rdf:Description rdf:about="#R_MAR06617">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_6617"/>
@@ -347625,13 +347572,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02990c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02990c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02990n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02990n" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR06619" sboTerm="SBO:0000185" id="MAR06619" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06619" sboTerm="SBO:0000185" id="R_MAR06619" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -347639,7 +347586,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06619">
+            <rdf:Description rdf:about="#R_MAR06619">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_6619"/>
@@ -347649,13 +347596,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02666c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02666c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02666n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02666n" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07653" sboTerm="SBO:0000185" id="MAR07653" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07653" sboTerm="SBO:0000185" id="R_MAR07653" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -347663,7 +347610,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07653">
+            <rdf:Description rdf:about="#R_MAR07653">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PPMI12346Ptn"/>
@@ -347675,13 +347622,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01133c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01133c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01133n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01133n" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07664" sboTerm="SBO:0000185" id="MAR07664" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07664" sboTerm="SBO:0000185" id="R_MAR07664" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -347689,7 +347636,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07664">
+            <rdf:Description rdf:about="#R_MAR07664">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/BIOCYTtn"/>
@@ -347701,13 +347648,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01400c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01400c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01400n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01400n" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07665" sboTerm="SBO:0000185" id="MAR07665" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07665" sboTerm="SBO:0000185" id="R_MAR07665" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -347715,7 +347662,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07665">
+            <rdf:Description rdf:about="#R_MAR07665">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/BTNtn"/>
@@ -347729,13 +347676,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01401c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01401c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01401n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01401n" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07712" sboTerm="SBO:0000185" id="MAR07712" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07712" sboTerm="SBO:0000185" id="R_MAR07712" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -347743,7 +347690,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07712">
+            <rdf:Description rdf:about="#R_MAR07712">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_7712"/>
@@ -347753,13 +347700,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01334c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01334n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334n" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07763" sboTerm="SBO:0000185" id="MAR07763" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07763" sboTerm="SBO:0000185" id="R_MAR07763" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -347767,7 +347714,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07763">
+            <rdf:Description rdf:about="#R_MAR07763">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/H2O2tn"/>
@@ -347779,13 +347726,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02041c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02041n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041n" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07764" sboTerm="SBO:0000185" id="MAR07764" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07764" sboTerm="SBO:0000185" id="R_MAR07764" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -347793,7 +347740,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07764">
+            <rdf:Description rdf:about="#R_MAR07764">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PItn"/>
@@ -347807,13 +347754,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02751n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751n" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07765" sboTerm="SBO:0000185" id="MAR07765" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07765" sboTerm="SBO:0000185" id="R_MAR07765" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -347821,7 +347768,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07765">
+            <rdf:Description rdf:about="#R_MAR07765">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/AMETr"/>
@@ -347833,13 +347780,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02877c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02877c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02877n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02877n" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07767" sboTerm="SBO:0000185" id="MAR07767" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07767" sboTerm="SBO:0000185" id="R_MAR07767" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -347847,7 +347794,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07767">
+            <rdf:Description rdf:about="#R_MAR07767">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/AHCYStn"/>
@@ -347859,13 +347806,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02871c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02871c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02871n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02871n" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07773" sboTerm="SBO:0000185" id="MAR07773" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07773" sboTerm="SBO:0000185" id="R_MAR07773" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -347873,7 +347820,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07773">
+            <rdf:Description rdf:about="#R_MAR07773">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/NADtn"/>
@@ -347885,13 +347832,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02552c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02552n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552n" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07786" sboTerm="SBO:0000185" id="MAR07786" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07786" sboTerm="SBO:0000185" id="R_MAR07786" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -347899,7 +347846,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07786">
+            <rdf:Description rdf:about="#R_MAR07786">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ATPtn"/>
@@ -347911,13 +347858,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01371n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371n" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07792" sboTerm="SBO:0000185" id="MAR07792" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07792" sboTerm="SBO:0000185" id="R_MAR07792" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -347925,7 +347872,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07792">
+            <rdf:Description rdf:about="#R_MAR07792">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GTPtn"/>
@@ -347937,13 +347884,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02034c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02034c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02034n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02034n" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07795" sboTerm="SBO:0000185" id="MAR07795" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07795" sboTerm="SBO:0000185" id="R_MAR07795" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -347951,7 +347898,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07795">
+            <rdf:Description rdf:about="#R_MAR07795">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ITPtn"/>
@@ -347963,13 +347910,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02193c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02193c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02193n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02193n" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07796" sboTerm="SBO:0000185" id="MAR07796" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07796" sboTerm="SBO:0000185" id="R_MAR07796" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -347977,7 +347924,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07796">
+            <rdf:Description rdf:about="#R_MAR07796">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/UTPtn"/>
@@ -347987,10 +347934,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03130c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03130c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03130n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03130n" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -347998,7 +347945,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07855" sboTerm="SBO:0000185" id="MAR07855" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07855" sboTerm="SBO:0000185" id="R_MAR07855" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -348006,7 +347953,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07855">
+            <rdf:Description rdf:about="#R_MAR07855">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/DITPtn"/>
@@ -348018,13 +347965,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01714c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01714c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01714n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01714n" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07856" sboTerm="SBO:0000185" id="MAR07856" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07856" sboTerm="SBO:0000185" id="R_MAR07856" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -348032,7 +347979,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07856">
+            <rdf:Description rdf:about="#R_MAR07856">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/DTDPtn"/>
@@ -348044,13 +347991,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01747c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01747c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01747n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01747n" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07857" sboTerm="SBO:0000185" id="MAR07857" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07857" sboTerm="SBO:0000185" id="R_MAR07857" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -348058,7 +348005,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07857">
+            <rdf:Description rdf:about="#R_MAR07857">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/DTTPtn"/>
@@ -348070,13 +348017,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01753c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01753c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01753n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01753n" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07858" sboTerm="SBO:0000185" id="MAR07858" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07858" sboTerm="SBO:0000185" id="R_MAR07858" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -348084,7 +348031,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07858">
+            <rdf:Description rdf:about="#R_MAR07858">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/DUDPtn"/>
@@ -348096,13 +348043,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01754c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01754c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01754n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01754n" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07859" sboTerm="SBO:0000185" id="MAR07859" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07859" sboTerm="SBO:0000185" id="R_MAR07859" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -348110,7 +348057,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07859">
+            <rdf:Description rdf:about="#R_MAR07859">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/DUMPtn"/>
@@ -348122,13 +348069,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01755c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01755c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01755n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01755n" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07860" sboTerm="SBO:0000185" id="MAR07860" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07860" sboTerm="SBO:0000185" id="R_MAR07860" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -348136,7 +348083,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07860">
+            <rdf:Description rdf:about="#R_MAR07860">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/DCTPtn"/>
@@ -348148,13 +348095,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01645c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01645c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01645n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01645n" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07861" sboTerm="SBO:0000185" id="MAR07861" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07861" sboTerm="SBO:0000185" id="R_MAR07861" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -348162,7 +348109,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07861">
+            <rdf:Description rdf:about="#R_MAR07861">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/DATPtn"/>
@@ -348174,13 +348121,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01642c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01642c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01642n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01642n" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07862" sboTerm="SBO:0000185" id="MAR07862" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07862" sboTerm="SBO:0000185" id="R_MAR07862" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -348188,7 +348135,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07862">
+            <rdf:Description rdf:about="#R_MAR07862">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/DGTPtn"/>
@@ -348200,13 +348147,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01688c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01688c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01688n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01688n" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07877" sboTerm="SBO:0000185" id="MAR07877" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07877" sboTerm="SBO:0000185" id="R_MAR07877" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -348214,7 +348161,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07877">
+            <rdf:Description rdf:about="#R_MAR07877">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/DIDPtn"/>
@@ -348226,13 +348173,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01693c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01693c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01693n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01693n" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08024" sboTerm="SBO:0000185" id="MAR08024" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08024" sboTerm="SBO:0000185" id="R_MAR08024" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -348240,7 +348187,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08024">
+            <rdf:Description rdf:about="#R_MAR08024">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PEPLYStn"/>
@@ -348251,13 +348198,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00204c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00204c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00204n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00204n" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08028" sboTerm="SBO:0000185" id="MAR08028" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08028" sboTerm="SBO:0000185" id="R_MAR08028" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -348265,7 +348212,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08028">
+            <rdf:Description rdf:about="#R_MAR08028">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/NTMELYStner"/>
@@ -348277,13 +348224,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00211n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00211n" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00211r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00211r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08082" sboTerm="SBO:0000185" id="MAR08082" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08082" sboTerm="SBO:0000185" id="R_MAR08082" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -348291,7 +348238,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08082">
+            <rdf:Description rdf:about="#R_MAR08082">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/35CGMPtn"/>
@@ -348303,13 +348250,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01433c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01433c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01433n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01433n" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08361" sboTerm="SBO:0000185" id="MAR08361" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08361" sboTerm="SBO:0000185" id="R_MAR08361" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -348317,7 +348264,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08361">
+            <rdf:Description rdf:about="#R_MAR08361">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CHOLtr"/>
@@ -348331,13 +348278,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01513c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01513c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01513n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01513n" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08363" sboTerm="SBO:0000185" id="MAR08363" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08363" sboTerm="SBO:0000185" id="R_MAR08363" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -348345,7 +348292,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08363">
+            <rdf:Description rdf:about="#R_MAR08363">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ACHtn"/>
@@ -348357,13 +348304,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01260c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01260c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01260n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01260n" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08412" sboTerm="SBO:0000185" id="MAR08412" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08412" sboTerm="SBO:0000185" id="R_MAR08412" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -348371,7 +348318,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08412">
+            <rdf:Description rdf:about="#R_MAR08412">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/O2Stn"/>
@@ -348383,13 +348330,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02631c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02631c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02631n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02631n" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08447" sboTerm="SBO:0000185" id="MAR08447" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08447" sboTerm="SBO:0000185" id="R_MAR08447" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -348397,7 +348344,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08447">
+            <rdf:Description rdf:about="#R_MAR08447">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CYTK1"/>
@@ -348409,13 +348356,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01630n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01630n" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08476" sboTerm="SBO:0000185" id="MAR08476" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08476" sboTerm="SBO:0000185" id="R_MAR08476" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -348424,7 +348371,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08476">
+            <rdf:Description rdf:about="#R_MAR08476">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_8476"/>
@@ -348435,40 +348382,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01668c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01668c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01668n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01668n" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Ent1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08639" sboTerm="SBO:0000185" id="MAR08639" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
-        <notes>
-          <body xmlns="http://www.w3.org/1999/xhtml">
-            <p>Confidence Level: 2</p>
-          </body>
-        </notes>
-        <annotation>
-          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08639">
-              <bqbiol:is>
-                <rdf:Bag>
-                  <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_8639"/>
-                </rdf:Bag>
-              </bqbiol:is>
-            </rdf:Description>
-          </rdf:RDF>
-        </annotation>
-        <listOfReactants>
-          <speciesReference species="MAM01721c" stoichiometry="1" constant="true"/>
-        </listOfReactants>
-        <listOfProducts>
-          <speciesReference species="MAM01721n" stoichiometry="1" constant="true"/>
-        </listOfProducts>
-      </reaction>
-      <reaction metaid="MAR08789" sboTerm="SBO:0000185" id="MAR08789" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08789" sboTerm="SBO:0000185" id="R_MAR08789" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -348476,7 +348399,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08789">
+            <rdf:Description rdf:about="#R_MAR08789">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/NMNtn"/>
@@ -348488,13 +348411,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02581c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02581c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02581n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02581n" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08828" sboTerm="SBO:0000185" id="MAR08828" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08828" sboTerm="SBO:0000185" id="R_MAR08828" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -348502,7 +348425,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08828">
+            <rdf:Description rdf:about="#R_MAR08828">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PAIL_HStn"/>
@@ -348514,13 +348437,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02750c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02750c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02750n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02750n" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08837" sboTerm="SBO:0000185" id="MAR08837" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08837" sboTerm="SBO:0000185" id="R_MAR08837" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -348528,7 +348451,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08837">
+            <rdf:Description rdf:about="#R_MAR08837">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PAIL45P_HStn"/>
@@ -348540,13 +348463,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02736c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02736c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02736n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02736n" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08838" sboTerm="SBO:0000185" id="MAR08838" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08838" sboTerm="SBO:0000185" id="R_MAR08838" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -348554,7 +348477,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08838">
+            <rdf:Description rdf:about="#R_MAR08838">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PAIL4P_HStn"/>
@@ -348566,13 +348489,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00553c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00553c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00553n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00553n" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08839" sboTerm="SBO:0000185" id="MAR08839" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08839" sboTerm="SBO:0000185" id="R_MAR08839" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -348580,7 +348503,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08839">
+            <rdf:Description rdf:about="#R_MAR08839">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/MI13456Ptn"/>
@@ -348592,13 +348515,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00521c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00521c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00521n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00521n" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08840" sboTerm="SBO:0000185" id="MAR08840" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08840" sboTerm="SBO:0000185" id="R_MAR08840" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -348606,7 +348529,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08840">
+            <rdf:Description rdf:about="#R_MAR08840">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/MI1346Ptn"/>
@@ -348618,13 +348541,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00523c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00523c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00523n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00523n" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08841" sboTerm="SBO:0000185" id="MAR08841" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08841" sboTerm="SBO:0000185" id="R_MAR08841" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -348632,7 +348555,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08841">
+            <rdf:Description rdf:about="#R_MAR08841">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/MI14Ptn"/>
@@ -348644,13 +348567,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00526c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00526c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00526n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00526n" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08842" sboTerm="SBO:0000185" id="MAR08842" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08842" sboTerm="SBO:0000185" id="R_MAR08842" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -348658,7 +348581,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08842">
+            <rdf:Description rdf:about="#R_MAR08842">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/MI1P_Dtn"/>
@@ -348669,13 +348592,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02173c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02173c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02173n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02173n" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08843" sboTerm="SBO:0000185" id="MAR08843" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08843" sboTerm="SBO:0000185" id="R_MAR08843" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -348683,7 +348606,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08843">
+            <rdf:Description rdf:about="#R_MAR08843">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/MINOHPtn"/>
@@ -348695,13 +348618,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02492c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02492c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02492n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02492n" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08844" sboTerm="SBO:0000185" id="MAR08844" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08844" sboTerm="SBO:0000185" id="R_MAR08844" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -348709,7 +348632,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08844">
+            <rdf:Description rdf:about="#R_MAR08844">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PPMI1346Ptn"/>
@@ -348721,13 +348644,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00531c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00531c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00531n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00531n" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08845" sboTerm="SBO:0000185" id="MAR08845" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08845" sboTerm="SBO:0000185" id="R_MAR08845" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -348735,7 +348658,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08845">
+            <rdf:Description rdf:about="#R_MAR08845">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PPPItn"/>
@@ -348747,13 +348670,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03057c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03057c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03057n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03057n" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08862" sboTerm="SBO:0000185" id="MAR08862" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08862" sboTerm="SBO:0000185" id="R_MAR08862" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -348761,7 +348684,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08862">
+            <rdf:Description rdf:about="#R_MAR08862">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/Uritn"/>
@@ -348773,13 +348696,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03123c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03123c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03123n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03123n" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08868" sboTerm="SBO:0000185" id="MAR08868" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08868" sboTerm="SBO:0000185" id="R_MAR08868" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -348787,7 +348710,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08868">
+            <rdf:Description rdf:about="#R_MAR08868">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/DUTPDPn"/>
@@ -348799,13 +348722,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01673c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01673c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01673n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01673n" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08871" sboTerm="SBO:0000185" id="MAR08871" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08871" sboTerm="SBO:0000185" id="R_MAR08871" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -348813,7 +348736,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08871">
+            <rdf:Description rdf:about="#R_MAR08871">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FPGS2"/>
@@ -348827,13 +348750,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01833c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01833c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01833n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01833n" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08894" sboTerm="SBO:0000185" id="MAR08894" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08894" sboTerm="SBO:0000185" id="R_MAR08894" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -348841,7 +348764,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08894">
+            <rdf:Description rdf:about="#R_MAR08894">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GMPtn"/>
@@ -348853,13 +348776,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02016c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02016c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02016n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02016n" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08909" sboTerm="SBO:0000185" id="MAR08909" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08909" sboTerm="SBO:0000185" id="R_MAR08909" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -348867,7 +348790,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08909">
+            <rdf:Description rdf:about="#R_MAR08909">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/IDPtn"/>
@@ -348879,13 +348802,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02161c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02161c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02161n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02161n" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08918" sboTerm="SBO:0000185" id="MAR08918" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08918" sboTerm="SBO:0000185" id="R_MAR08918" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -348893,7 +348816,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08918">
+            <rdf:Description rdf:about="#R_MAR08918">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/LYStn"/>
@@ -348905,13 +348828,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02426c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02426c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02426n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02426n" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09673" sboTerm="SBO:0000185" id="MAR09673" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09673" sboTerm="SBO:0000185" id="R_MAR09673" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -348919,7 +348842,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09673">
+            <rdf:Description rdf:about="#R_MAR09673">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_9673"/>
@@ -348929,13 +348852,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02978n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02978n" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02978c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02978c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09674" sboTerm="SBO:0000185" id="MAR09674" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09674" sboTerm="SBO:0000185" id="R_MAR09674" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -348943,7 +348866,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09674">
+            <rdf:Description rdf:about="#R_MAR09674">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_9674"/>
@@ -348953,13 +348876,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00240n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00240n" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00240c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00240c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08638" sboTerm="SBO:0000185" id="MAR08638" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08638" sboTerm="SBO:0000185" id="R_MAR08638" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -348967,7 +348890,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08638">
+            <rdf:Description rdf:about="#R_MAR08638">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/SEASMETtn"/>
@@ -348979,13 +348902,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02882c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02882c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02882n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02882n" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08642" sboTerm="SBO:0000185" id="MAR08642" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08642" sboTerm="SBO:0000185" id="R_MAR08642" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -348993,7 +348916,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08642">
+            <rdf:Description rdf:about="#R_MAR08642">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/SEAHCYStn"/>
@@ -349005,13 +348928,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02881c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02881c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02881n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02881n" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR04314" sboTerm="SBO:0000185" id="MAR04314" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04314" sboTerm="SBO:0000185" id="R_MAR04314" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -349019,7 +348942,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04314">
+            <rdf:Description rdf:about="#R_MAR04314">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_4314"/>
@@ -349029,13 +348952,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01682c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01682c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01682l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01682l" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09016" sboTerm="SBO:0000185" id="MAR09016" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09016" sboTerm="SBO:0000185" id="R_MAR09016" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -349043,7 +348966,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09016">
+            <rdf:Description rdf:about="#R_MAR09016">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_9016"/>
@@ -349053,13 +348976,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02555l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555l" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09018" sboTerm="SBO:0000185" id="MAR09018" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09018" sboTerm="SBO:0000185" id="R_MAR09018" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -349067,7 +348990,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09018">
+            <rdf:Description rdf:about="#R_MAR09018">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_9018"/>
@@ -349077,13 +349000,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285l" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR00769" sboTerm="SBO:0000185" id="MAR00769" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00769" sboTerm="SBO:0000185" id="R_MAR00769" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -349091,7 +349014,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00769">
+            <rdf:Description rdf:about="#R_MAR00769">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_0769"/>
@@ -349101,13 +349024,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01972c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01972c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01972l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01972l" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR00791" sboTerm="SBO:0000185" id="MAR00791" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00791" sboTerm="SBO:0000185" id="R_MAR00791" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -349115,7 +349038,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00791">
+            <rdf:Description rdf:about="#R_MAR00791">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GALSIDEtl"/>
@@ -349127,13 +349050,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01679c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01679c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01679l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01679l" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR00796" sboTerm="SBO:0000185" id="MAR00796" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00796" sboTerm="SBO:0000185" id="R_MAR00796" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -349141,7 +349064,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00796">
+            <rdf:Description rdf:about="#R_MAR00796">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/SPHMYLNtl"/>
@@ -349153,13 +349076,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02908c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02908c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02908l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02908l" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR00798" sboTerm="SBO:0000185" id="MAR00798" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00798" sboTerm="SBO:0000185" id="R_MAR00798" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -349167,7 +349090,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00798">
+            <rdf:Description rdf:about="#R_MAR00798">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/SPHINGStl"/>
@@ -349179,13 +349102,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02929c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02929c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02929l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02929l" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR00802" sboTerm="SBO:0000185" id="MAR00802" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00802" sboTerm="SBO:0000185" id="R_MAR00802" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -349193,7 +349116,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00802">
+            <rdf:Description rdf:about="#R_MAR00802">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GALSIDEtl"/>
@@ -349205,13 +349128,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01960c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01960c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01960l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01960l" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR00831" sboTerm="SBO:0000185" id="MAR00831" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00831" sboTerm="SBO:0000185" id="R_MAR00831" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -349219,7 +349142,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00831">
+            <rdf:Description rdf:about="#R_MAR00831">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_0831"/>
@@ -349229,13 +349152,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02008c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02008c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02008l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02008l" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR00913" sboTerm="SBO:0000185" id="MAR00913" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00913" sboTerm="SBO:0000185" id="R_MAR00913" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -349243,7 +349166,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00913">
+            <rdf:Description rdf:about="#R_MAR00913">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_0913"/>
@@ -349253,13 +349176,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02810c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02810c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02810l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02810l" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR00929" sboTerm="SBO:0000185" id="MAR00929" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00929" sboTerm="SBO:0000185" id="R_MAR00929" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -349267,7 +349190,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00929">
+            <rdf:Description rdf:about="#R_MAR00929">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/PAPStl"/>
@@ -349277,13 +349200,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02682c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02682c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02682l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02682l" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01917" sboTerm="SBO:0000185" id="MAR01917" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01917" sboTerm="SBO:0000185" id="R_MAR01917" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -349291,7 +349214,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01917">
+            <rdf:Description rdf:about="#R_MAR01917">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR96700"/>
@@ -349304,10 +349227,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01450c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01450l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -349316,7 +349239,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02040" sboTerm="SBO:0000185" id="MAR02040" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02040" sboTerm="SBO:0000185" id="R_MAR02040" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -349324,7 +349247,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02040">
+            <rdf:Description rdf:about="#R_MAR02040">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_2040"/>
@@ -349334,13 +349257,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01790c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01790c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01790l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01790l" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR02087" sboTerm="SBO:0000185" id="MAR02087" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02087" sboTerm="SBO:0000185" id="R_MAR02087" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -349348,7 +349271,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02087">
+            <rdf:Description rdf:about="#R_MAR02087">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_2087"/>
@@ -349358,13 +349281,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00986c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00986c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00986l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00986l" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR02090" sboTerm="SBO:0000185" id="MAR02090" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02090" sboTerm="SBO:0000185" id="R_MAR02090" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -349372,7 +349295,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02090">
+            <rdf:Description rdf:about="#R_MAR02090">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_2090"/>
@@ -349382,13 +349305,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00413c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00413c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00413l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00413l" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR02101" sboTerm="SBO:0000185" id="MAR02101" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02101" sboTerm="SBO:0000185" id="R_MAR02101" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -349396,7 +349319,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02101">
+            <rdf:Description rdf:about="#R_MAR02101">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_2101"/>
@@ -349406,13 +349329,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00411c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00411c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00411l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00411l" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03987" sboTerm="SBO:0000185" id="MAR03987" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03987" sboTerm="SBO:0000185" id="R_MAR03987" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -349421,7 +349344,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03987">
+            <rdf:Description rdf:about="#R_MAR03987">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR96669"/>
@@ -349432,13 +349355,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01439e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01439e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01439l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01439l" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR04887" sboTerm="SBO:0000185" id="MAR04887" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04887" sboTerm="SBO:0000185" id="R_MAR04887" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -349447,7 +349370,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04887">
+            <rdf:Description rdf:about="#R_MAR04887">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/H2Otly"/>
@@ -349459,13 +349382,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR04903" sboTerm="SBO:0000185" id="MAR04903" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04903" sboTerm="SBO:0000185" id="R_MAR04903" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -349473,7 +349396,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04903">
+            <rdf:Description rdf:about="#R_MAR04903">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_4903"/>
@@ -349483,13 +349406,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02630l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630l" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR04907" sboTerm="SBO:0000185" id="MAR04907" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04907" sboTerm="SBO:0000185" id="R_MAR04907" name="ATP:ADP phosphatransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -349498,7 +349421,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04907">
+            <rdf:Description rdf:about="#R_MAR04907">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R00124"/>
@@ -349509,15 +349432,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01285l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371l" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR04962" sboTerm="SBO:0000185" id="MAR04962" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04962" sboTerm="SBO:0000185" id="R_MAR04962" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -349526,7 +349449,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04962">
+            <rdf:Description rdf:about="#R_MAR04962">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ACGAMtly"/>
@@ -349538,13 +349461,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02527l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02527l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02527c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02527c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05047" sboTerm="SBO:0000185" id="MAR05047" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05047" sboTerm="SBO:0000185" id="R_MAR05047" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -349553,7 +349476,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05047">
+            <rdf:Description rdf:about="#R_MAR05047">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR102871"/>
@@ -349564,16 +349487,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02751l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Tpc1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05048" sboTerm="SBO:0000185" id="MAR05048" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05048" sboTerm="SBO:0000185" id="R_MAR05048" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -349582,7 +349505,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05048">
+            <rdf:Description rdf:about="#R_MAR05048">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/r1059"/>
@@ -349592,16 +349515,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01365l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01365l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01365c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01365c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG13384"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05049" sboTerm="SBO:0000185" id="MAR05049" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05049" sboTerm="SBO:0000185" id="R_MAR05049" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -349610,7 +349533,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05049">
+            <rdf:Description rdf:about="#R_MAR05049">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/r1061"/>
@@ -349620,16 +349543,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01369l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01369l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01369c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01369c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG13384"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05050" sboTerm="SBO:0000185" id="MAR05050" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05050" sboTerm="SBO:0000185" id="R_MAR05050" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -349637,7 +349560,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05050">
+            <rdf:Description rdf:about="#R_MAR05050">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/r1062"/>
@@ -349647,16 +349570,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01370l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01370l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01370c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01370c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG13384"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05051" sboTerm="SBO:0000185" id="MAR05051" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05051" sboTerm="SBO:0000185" id="R_MAR05051" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -349665,7 +349588,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05051">
+            <rdf:Description rdf:about="#R_MAR05051">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/r1063"/>
@@ -349675,16 +349598,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01628l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01628l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01628c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01628c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG13384"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05052" sboTerm="SBO:0000185" id="MAR05052" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05052" sboTerm="SBO:0000185" id="R_MAR05052" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -349693,7 +349616,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05052">
+            <rdf:Description rdf:about="#R_MAR05052">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/r1064"/>
@@ -349703,16 +349626,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01975l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01975l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01975c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01975c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG13384"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05053" sboTerm="SBO:0000185" id="MAR05053" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05053" sboTerm="SBO:0000185" id="R_MAR05053" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -349721,7 +349644,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05053">
+            <rdf:Description rdf:about="#R_MAR05053">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GLYt2rL"/>
@@ -349732,16 +349655,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01986l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01986c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG13384"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05054" sboTerm="SBO:0000185" id="MAR05054" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05054" sboTerm="SBO:0000185" id="R_MAR05054" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -349750,7 +349673,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05054">
+            <rdf:Description rdf:about="#R_MAR05054">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR100649"/>
@@ -349761,16 +349684,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02125l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02125l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02125c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02125c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG13384"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05055" sboTerm="SBO:0000185" id="MAR05055" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05055" sboTerm="SBO:0000185" id="R_MAR05055" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -349779,7 +349702,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05055">
+            <rdf:Description rdf:about="#R_MAR05055">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/r1068"/>
@@ -349789,16 +349712,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02360l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02360l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02360c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02360c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG13384"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05056" sboTerm="SBO:0000185" id="MAR05056" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05056" sboTerm="SBO:0000185" id="R_MAR05056" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -349807,7 +349730,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05056">
+            <rdf:Description rdf:about="#R_MAR05056">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/r1071"/>
@@ -349817,16 +349740,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02426l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02426l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02426c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02426c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG13384"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05057" sboTerm="SBO:0000185" id="MAR05057" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05057" sboTerm="SBO:0000185" id="R_MAR05057" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -349835,7 +349758,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05057">
+            <rdf:Description rdf:about="#R_MAR05057">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/r1073"/>
@@ -349845,16 +349768,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02471l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02471l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02471c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02471c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG13384"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05058" sboTerm="SBO:0000185" id="MAR05058" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05058" sboTerm="SBO:0000185" id="R_MAR05058" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -349863,7 +349786,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05058">
+            <rdf:Description rdf:about="#R_MAR05058">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/r1074"/>
@@ -349873,16 +349796,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02724l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02724l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02724c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02724c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG13384"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05059" sboTerm="SBO:0000185" id="MAR05059" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05059" sboTerm="SBO:0000185" id="R_MAR05059" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -349891,7 +349814,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05059">
+            <rdf:Description rdf:about="#R_MAR05059">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PROt2rL"/>
@@ -349902,16 +349825,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02770l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02770l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02770c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02770c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG13384"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05060" sboTerm="SBO:0000185" id="MAR05060" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05060" sboTerm="SBO:0000185" id="R_MAR05060" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -349920,7 +349843,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05060">
+            <rdf:Description rdf:about="#R_MAR05060">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/r1076"/>
@@ -349930,16 +349853,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02896l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02896l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02896c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02896c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG13384"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05061" sboTerm="SBO:0000185" id="MAR05061" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05061" sboTerm="SBO:0000185" id="R_MAR05061" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -349947,7 +349870,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05061">
+            <rdf:Description rdf:about="#R_MAR05061">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/r1077"/>
@@ -349957,16 +349880,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03089l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03089l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03089c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03089c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG13384"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05062" sboTerm="SBO:0000185" id="MAR05062" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05062" sboTerm="SBO:0000185" id="R_MAR05062" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -349975,7 +349898,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05062">
+            <rdf:Description rdf:about="#R_MAR05062">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/r1080"/>
@@ -349985,10 +349908,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03101l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03101l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03101c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03101c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -349997,7 +349920,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05063" sboTerm="SBO:0000185" id="MAR05063" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05063" sboTerm="SBO:0000185" id="R_MAR05063" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -350005,7 +349928,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05063">
+            <rdf:Description rdf:about="#R_MAR05063">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/r1140"/>
@@ -350015,16 +349938,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03135l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03135l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03135c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03135c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG13384"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05064" sboTerm="SBO:0000185" id="MAR05064" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05064" sboTerm="SBO:0000185" id="R_MAR05064" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -350033,7 +349956,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05064">
+            <rdf:Description rdf:about="#R_MAR05064">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ALAt2rL"/>
@@ -350044,16 +349967,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01307l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01307l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01307c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01307c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG13384"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05065" sboTerm="SBO:0000185" id="MAR05065" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05065" sboTerm="SBO:0000185" id="R_MAR05065" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -350062,7 +349985,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05065">
+            <rdf:Description rdf:about="#R_MAR05065">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/r0825"/>
@@ -350072,16 +349995,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02184l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02184l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02184c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02184c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG13384"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05066" sboTerm="SBO:0000185" id="MAR05066" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05066" sboTerm="SBO:0000185" id="R_MAR05066" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -350090,7 +350013,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05066">
+            <rdf:Description rdf:about="#R_MAR05066">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/r0925"/>
@@ -350100,16 +350023,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02993l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02993l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02993c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02993c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG13384"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05067" sboTerm="SBO:0000185" id="MAR05067" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05067" sboTerm="SBO:0000185" id="R_MAR05067" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -350117,7 +350040,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05067">
+            <rdf:Description rdf:about="#R_MAR05067">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GLUt7l"/>
@@ -350129,16 +350052,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01974l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01974l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01974c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01974c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG13384"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05197" sboTerm="SBO:0000185" id="MAR05197" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05197" sboTerm="SBO:0000185" id="R_MAR05197" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -350147,7 +350070,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05197">
+            <rdf:Description rdf:about="#R_MAR05197">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/r0803"/>
@@ -350157,13 +350080,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01308e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01308e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01308l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01308l" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05199" sboTerm="SBO:0000185" id="MAR05199" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05199" sboTerm="SBO:0000185" id="R_MAR05199" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -350171,7 +350094,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05199">
+            <rdf:Description rdf:about="#R_MAR05199">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/r0805"/>
@@ -350181,13 +350104,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01343e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01343e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01343l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01343l" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05201" sboTerm="SBO:0000185" id="MAR05201" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05201" sboTerm="SBO:0000185" id="R_MAR05201" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -350196,7 +350119,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05201">
+            <rdf:Description rdf:about="#R_MAR05201">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/r0807"/>
@@ -350206,13 +350129,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01345e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01345e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01345l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01345l" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05204" sboTerm="SBO:0000185" id="MAR05204" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05204" sboTerm="SBO:0000185" id="R_MAR05204" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -350221,7 +350144,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05204">
+            <rdf:Description rdf:about="#R_MAR05204">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/r1130"/>
@@ -350231,13 +350154,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01350e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01350e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01350l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01350l" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05212" sboTerm="SBO:0000185" id="MAR05212" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05212" sboTerm="SBO:0000185" id="R_MAR05212" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -350246,7 +350169,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05212">
+            <rdf:Description rdf:about="#R_MAR05212">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/r1034"/>
@@ -350256,13 +350179,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01827e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01827e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01827l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01827l" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05214" sboTerm="SBO:0000185" id="MAR05214" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05214" sboTerm="SBO:0000185" id="R_MAR05214" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -350270,7 +350193,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05214">
+            <rdf:Description rdf:about="#R_MAR05214">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/r1049"/>
@@ -350280,13 +350203,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02044e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02044e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02044l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02044l" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05217" sboTerm="SBO:0000185" id="MAR05217" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05217" sboTerm="SBO:0000185" id="R_MAR05217" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -350294,7 +350217,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05217">
+            <rdf:Description rdf:about="#R_MAR05217">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/r1055"/>
@@ -350304,13 +350227,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02753e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02753e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02753l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02753l" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05218" sboTerm="SBO:0000185" id="MAR05218" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05218" sboTerm="SBO:0000185" id="R_MAR05218" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -350318,7 +350241,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05218">
+            <rdf:Description rdf:about="#R_MAR05218">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/r1057"/>
@@ -350328,13 +350251,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02802e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02802e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02802l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02802l" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05220" sboTerm="SBO:0000185" id="MAR05220" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05220" sboTerm="SBO:0000185" id="R_MAR05220" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -350342,7 +350265,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05220">
+            <rdf:Description rdf:about="#R_MAR05220">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/r1082"/>
@@ -350352,13 +350275,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00186e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00186e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00186l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00186l" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05224" sboTerm="SBO:0000185" id="MAR05224" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05224" sboTerm="SBO:0000185" id="R_MAR05224" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -350366,7 +350289,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05224">
+            <rdf:Description rdf:about="#R_MAR05224">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_5224"/>
@@ -350376,13 +350299,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02935c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02935c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02935l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02935l" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05226" sboTerm="SBO:0000185" id="MAR05226" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05226" sboTerm="SBO:0000185" id="R_MAR05226" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -350390,7 +350313,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05226">
+            <rdf:Description rdf:about="#R_MAR05226">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_5226"/>
@@ -350400,13 +350323,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02012c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02012c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02012l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02012l" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05228" sboTerm="SBO:0000185" id="MAR05228" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05228" sboTerm="SBO:0000185" id="R_MAR05228" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -350414,7 +350337,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05228">
+            <rdf:Description rdf:about="#R_MAR05228">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_5228"/>
@@ -350424,13 +350347,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01358c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01358c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01358l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01358l" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05230" sboTerm="SBO:0000185" id="MAR05230" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05230" sboTerm="SBO:0000185" id="R_MAR05230" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -350438,7 +350361,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05230">
+            <rdf:Description rdf:about="#R_MAR05230">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_5230"/>
@@ -350448,13 +350371,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02414c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02414c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02414l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02414l" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07196" sboTerm="SBO:0000185" id="MAR07196" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07196" sboTerm="SBO:0000185" id="R_MAR07196" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -350462,7 +350385,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07196">
+            <rdf:Description rdf:about="#R_MAR07196">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ACNAMlt"/>
@@ -350476,18 +350399,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02543c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02543c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02543l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02543l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="MFS9"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07199" sboTerm="SBO:0000185" id="MAR07199" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07199" sboTerm="SBO:0000185" id="R_MAR07199" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -350495,7 +350418,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07199">
+            <rdf:Description rdf:about="#R_MAR07199">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/HMR_7199"/>
@@ -350506,13 +350429,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00205c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00205c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00205l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00205l" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07224" sboTerm="SBO:0000185" id="MAR07224" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07224" sboTerm="SBO:0000185" id="R_MAR07224" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -350520,7 +350443,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07224">
+            <rdf:Description rdf:about="#R_MAR07224">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/HSPGtly"/>
@@ -350532,13 +350455,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02054e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02054e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02054l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02054l" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07252" sboTerm="SBO:0000185" id="MAR07252" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07252" sboTerm="SBO:0000185" id="R_MAR07252" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -350546,7 +350469,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07252">
+            <rdf:Description rdf:about="#R_MAR07252">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/XYLtly"/>
@@ -350558,13 +350481,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01758l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01758l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01758c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01758c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07283" sboTerm="SBO:0000185" id="MAR07283" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07283" sboTerm="SBO:0000185" id="R_MAR07283" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -350572,7 +350495,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07283">
+            <rdf:Description rdf:about="#R_MAR07283">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_7283"/>
@@ -350582,13 +350505,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00198c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00198c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00198l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00198l" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07374" sboTerm="SBO:0000185" id="MAR07374" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07374" sboTerm="SBO:0000185" id="R_MAR07374" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -350596,7 +350519,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07374">
+            <rdf:Description rdf:about="#R_MAR07374">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/KSItly"/>
@@ -350608,13 +350531,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02278e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02278e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02278l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02278l" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07430" sboTerm="SBO:0000185" id="MAR07430" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07430" sboTerm="SBO:0000185" id="R_MAR07430" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -350622,7 +350545,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07430">
+            <rdf:Description rdf:about="#R_MAR07430">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/MANtly"/>
@@ -350634,13 +350557,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02453l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02453l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02453c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02453c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07454" sboTerm="SBO:0000185" id="MAR07454" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07454" sboTerm="SBO:0000185" id="R_MAR07454" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -350648,7 +350571,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07454">
+            <rdf:Description rdf:about="#R_MAR07454">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/KSII_CORE2tly"/>
@@ -350660,13 +350583,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02288e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02288e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02288l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02288l" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07470" sboTerm="SBO:0000185" id="MAR07470" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07470" sboTerm="SBO:0000185" id="R_MAR07470" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -350674,7 +350597,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07470">
+            <rdf:Description rdf:about="#R_MAR07470">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/UDPACGALtl"/>
@@ -350686,13 +350609,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03110c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03110c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03110l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03110l" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07483" sboTerm="SBO:0000185" id="MAR07483" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07483" sboTerm="SBO:0000185" id="R_MAR07483" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -350700,7 +350623,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07483">
+            <rdf:Description rdf:about="#R_MAR07483">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/KSII_CORE4tly"/>
@@ -350712,13 +350635,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02303e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02303e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02303l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02303l" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07500" sboTerm="SBO:0000185" id="MAR07500" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07500" sboTerm="SBO:0000185" id="R_MAR07500" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -350726,7 +350649,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07500">
+            <rdf:Description rdf:about="#R_MAR07500">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CSPG_Atly"/>
@@ -350738,13 +350661,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01517e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01517e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01517l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01517l" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07512" sboTerm="SBO:0000185" id="MAR07512" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07512" sboTerm="SBO:0000185" id="R_MAR07512" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -350752,7 +350675,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07512">
+            <rdf:Description rdf:about="#R_MAR07512">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CSPG_Btly"/>
@@ -350764,13 +350687,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01525e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01525e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01525l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01525l" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07524" sboTerm="SBO:0000185" id="MAR07524" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07524" sboTerm="SBO:0000185" id="R_MAR07524" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -350778,7 +350701,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07524">
+            <rdf:Description rdf:about="#R_MAR07524">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CSPG_Ctly"/>
@@ -350790,13 +350713,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01533e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01533e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01533l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01533l" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07540" sboTerm="SBO:0000185" id="MAR07540" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07540" sboTerm="SBO:0000185" id="R_MAR07540" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -350804,7 +350727,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07540">
+            <rdf:Description rdf:about="#R_MAR07540">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CSPG_Dtly"/>
@@ -350816,13 +350739,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01543e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01543e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01543l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01543l" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07556" sboTerm="SBO:0000185" id="MAR07556" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07556" sboTerm="SBO:0000185" id="R_MAR07556" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -350830,7 +350753,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07556">
+            <rdf:Description rdf:about="#R_MAR07556">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CSPG_Etly"/>
@@ -350842,13 +350765,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01554e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01554e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01554l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01554l" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07570" sboTerm="SBO:0000185" id="MAR07570" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07570" sboTerm="SBO:0000185" id="R_MAR07570" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -350856,7 +350779,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07570">
+            <rdf:Description rdf:about="#R_MAR07570">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/HAtly"/>
@@ -350868,13 +350791,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02141e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02141e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02141l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02141l" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07581" sboTerm="SBO:0000185" id="MAR07581" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07581" sboTerm="SBO:0000185" id="R_MAR07581" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -350882,7 +350805,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07581">
+            <rdf:Description rdf:about="#R_MAR07581">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/S2L2FN2M2MASNtly"/>
@@ -350894,13 +350817,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02672e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02672e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02672l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02672l" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07584" sboTerm="SBO:0000185" id="MAR07584" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07584" sboTerm="SBO:0000185" id="R_MAR07584" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -350908,7 +350831,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07584">
+            <rdf:Description rdf:about="#R_MAR07584">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/N2M2NMASNtly"/>
@@ -350920,13 +350843,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02510e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02510e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02510l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02510l" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07710" sboTerm="SBO:0000185" id="MAR07710" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07710" sboTerm="SBO:0000185" id="R_MAR07710" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -350934,7 +350857,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07710">
+            <rdf:Description rdf:about="#R_MAR07710">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ADEtl"/>
@@ -350946,16 +350869,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01279c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01279c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01279l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01279l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Ent1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07711" sboTerm="SBO:0000185" id="MAR07711" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07711" sboTerm="SBO:0000185" id="R_MAR07711" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -350963,7 +350886,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07711">
+            <rdf:Description rdf:about="#R_MAR07711">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_7711"/>
@@ -350973,13 +350896,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01334c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01334l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334l" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07714" sboTerm="SBO:0000185" id="MAR07714" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07714" sboTerm="SBO:0000185" id="R_MAR07714" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -350987,7 +350910,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07714">
+            <rdf:Description rdf:about="#R_MAR07714">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ADNtl"/>
@@ -350999,16 +350922,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01280c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01280c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01280l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01280l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Ent1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07715" sboTerm="SBO:0000185" id="MAR07715" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07715" sboTerm="SBO:0000185" id="R_MAR07715" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -351016,7 +350939,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07715">
+            <rdf:Description rdf:about="#R_MAR07715">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_7715"/>
@@ -351028,13 +350951,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03114c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03114c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03114l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03114l" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07718" sboTerm="SBO:0000185" id="MAR07718" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07718" sboTerm="SBO:0000185" id="R_MAR07718" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -351042,7 +350965,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07718">
+            <rdf:Description rdf:about="#R_MAR07718">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/Uritl"/>
@@ -351054,16 +350977,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03123c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03123c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03123l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03123l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Ent1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07720" sboTerm="SBO:0000185" id="MAR07720" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07720" sboTerm="SBO:0000185" id="R_MAR07720" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -351071,7 +350994,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07720">
+            <rdf:Description rdf:about="#R_MAR07720">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_7720"/>
@@ -351081,13 +351004,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01590c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01590c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01590l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01590l" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07722" sboTerm="SBO:0000185" id="MAR07722" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07722" sboTerm="SBO:0000185" id="R_MAR07722" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -351095,7 +351018,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07722">
+            <rdf:Description rdf:about="#R_MAR07722">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CYTDtl"/>
@@ -351107,16 +351030,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01630l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01630l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Ent1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07724" sboTerm="SBO:0000185" id="MAR07724" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07724" sboTerm="SBO:0000185" id="R_MAR07724" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -351124,7 +351047,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07724">
+            <rdf:Description rdf:about="#R_MAR07724">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_7724"/>
@@ -351134,13 +351057,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01752c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01752c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01752l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01752l" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07726" sboTerm="SBO:0000185" id="MAR07726" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07726" sboTerm="SBO:0000185" id="R_MAR07726" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -351148,7 +351071,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07726">
+            <rdf:Description rdf:about="#R_MAR07726">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/THYMDtl"/>
@@ -351160,16 +351083,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02996c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02996c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02996l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02996l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Ent1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07727" sboTerm="SBO:0000185" id="MAR07727" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07727" sboTerm="SBO:0000185" id="R_MAR07727" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -351177,7 +351100,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07727">
+            <rdf:Description rdf:about="#R_MAR07727">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_7727"/>
@@ -351187,13 +351110,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02016c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02016c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02016l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02016l" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07729" sboTerm="SBO:0000185" id="MAR07729" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07729" sboTerm="SBO:0000185" id="R_MAR07729" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -351201,7 +351124,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07729">
+            <rdf:Description rdf:about="#R_MAR07729">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GSNtl"/>
@@ -351213,16 +351136,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02038c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02038c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02038l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02038l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Ent1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07730" sboTerm="SBO:0000185" id="MAR07730" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07730" sboTerm="SBO:0000185" id="R_MAR07730" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -351230,7 +351153,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07730">
+            <rdf:Description rdf:about="#R_MAR07730">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/COAtl"/>
@@ -351242,13 +351165,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01597l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597l" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07732" sboTerm="SBO:0000185" id="MAR07732" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07732" sboTerm="SBO:0000185" id="R_MAR07732" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -351256,7 +351179,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07732">
+            <rdf:Description rdf:about="#R_MAR07732">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/DPCOAtl"/>
@@ -351268,13 +351191,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01674c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01674c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01674l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01674l" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07762" sboTerm="SBO:0000185" id="MAR07762" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07762" sboTerm="SBO:0000185" id="R_MAR07762" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -351282,7 +351205,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07762">
+            <rdf:Description rdf:about="#R_MAR07762">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/H2O2tly"/>
@@ -351294,13 +351217,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02041c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02041l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041l" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07770" sboTerm="SBO:0000185" id="MAR07770" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07770" sboTerm="SBO:0000185" id="R_MAR07770" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -351308,7 +351231,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07770">
+            <rdf:Description rdf:about="#R_MAR07770">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/SO4tl"/>
@@ -351322,13 +351245,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02946c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02946c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02946l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02946l" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07799" sboTerm="SBO:0000185" id="MAR07799" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07799" sboTerm="SBO:0000185" id="R_MAR07799" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -351336,7 +351259,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07799">
+            <rdf:Description rdf:about="#R_MAR07799">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ATPasel"/>
@@ -351347,14 +351270,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039l" stoichiometry="4" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039l" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -351362,7 +351285,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07907" sboTerm="SBO:0000185" id="MAR07907" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07907" sboTerm="SBO:0000185" id="R_MAR07907" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -351370,7 +351293,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07907">
+            <rdf:Description rdf:about="#R_MAR07907">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/S2L2N2M2MASNtly"/>
@@ -351382,13 +351305,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01652e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01652e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01652l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01652l" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07915" sboTerm="SBO:0000185" id="MAR07915" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07915" sboTerm="SBO:0000185" id="R_MAR07915" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -351396,7 +351319,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07915">
+            <rdf:Description rdf:about="#R_MAR07915">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/10FTHF5GLUtl"/>
@@ -351408,13 +351331,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00267c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00267c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00267l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00267l" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07918" sboTerm="SBO:0000185" id="MAR07918" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07918" sboTerm="SBO:0000185" id="R_MAR07918" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -351422,7 +351345,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07918">
+            <rdf:Description rdf:about="#R_MAR07918">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/10FTHF6GLUtl"/>
@@ -351434,13 +351357,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00268c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00268c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00268l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00268l" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07924" sboTerm="SBO:0000185" id="MAR07924" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07924" sboTerm="SBO:0000185" id="R_MAR07924" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -351448,7 +351371,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07924">
+            <rdf:Description rdf:about="#R_MAR07924">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/10FTHF7GLUtl"/>
@@ -351460,13 +351383,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00269c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00269c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00269l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00269l" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07927" sboTerm="SBO:0000185" id="MAR07927" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07927" sboTerm="SBO:0000185" id="R_MAR07927" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -351474,7 +351397,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07927">
+            <rdf:Description rdf:about="#R_MAR07927">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/10FTHFtl"/>
@@ -351486,13 +351409,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00266c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00266c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00266l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00266l" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08118" sboTerm="SBO:0000185" id="MAR08118" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08118" sboTerm="SBO:0000185" id="R_MAR08118" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -351500,7 +351423,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08118">
+            <rdf:Description rdf:about="#R_MAR08118">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/5DHFtl"/>
@@ -351512,13 +351435,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02691c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02691c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02691l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02691l" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08119" sboTerm="SBO:0000185" id="MAR08119" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08119" sboTerm="SBO:0000185" id="R_MAR08119" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -351526,7 +351449,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08119">
+            <rdf:Description rdf:about="#R_MAR08119">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/5THFtl"/>
@@ -351538,13 +351461,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02692c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02692c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02692l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02692l" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08121" sboTerm="SBO:0000185" id="MAR08121" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08121" sboTerm="SBO:0000185" id="R_MAR08121" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -351552,7 +351475,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08121">
+            <rdf:Description rdf:about="#R_MAR08121">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/6DHFtl"/>
@@ -351564,13 +351487,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02118c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02118c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02118l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02118l" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08123" sboTerm="SBO:0000185" id="MAR08123" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08123" sboTerm="SBO:0000185" id="R_MAR08123" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -351578,7 +351501,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08123">
+            <rdf:Description rdf:about="#R_MAR08123">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/6THFtl"/>
@@ -351590,13 +351513,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02119c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02119c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02119l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02119l" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08125" sboTerm="SBO:0000185" id="MAR08125" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08125" sboTerm="SBO:0000185" id="R_MAR08125" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -351604,7 +351527,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08125">
+            <rdf:Description rdf:about="#R_MAR08125">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/7DHFtl"/>
@@ -351616,13 +351539,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02104c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02104c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02104l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02104l" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08127" sboTerm="SBO:0000185" id="MAR08127" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08127" sboTerm="SBO:0000185" id="R_MAR08127" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -351630,7 +351553,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08127">
+            <rdf:Description rdf:about="#R_MAR08127">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/7THFtl"/>
@@ -351642,13 +351565,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02105c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02105c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02105l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02105l" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08131" sboTerm="SBO:0000185" id="MAR08131" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08131" sboTerm="SBO:0000185" id="R_MAR08131" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -351656,7 +351579,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08131">
+            <rdf:Description rdf:about="#R_MAR08131">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/DHORTS"/>
@@ -351668,13 +351591,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01700c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01700c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01700l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01700l" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08134" sboTerm="SBO:0000185" id="MAR08134" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08134" sboTerm="SBO:0000185" id="R_MAR08134" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -351682,7 +351605,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08134">
+            <rdf:Description rdf:about="#R_MAR08134">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/THFtl"/>
@@ -351694,13 +351617,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02980c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02980c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02980l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02980l" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08196" sboTerm="SBO:0000185" id="MAR08196" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08196" sboTerm="SBO:0000185" id="R_MAR08196" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -351708,7 +351631,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08196">
+            <rdf:Description rdf:about="#R_MAR08196">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ACGBGBSIDEtl"/>
@@ -351720,13 +351643,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01391c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01391c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01391l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01391l" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08200" sboTerm="SBO:0000185" id="MAR08200" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08200" sboTerm="SBO:0000185" id="R_MAR08200" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -351734,7 +351657,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08200">
+            <rdf:Description rdf:about="#R_MAR08200">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ACGAGBSIDEtl"/>
@@ -351746,13 +351669,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01324c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01324c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01324l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01324l" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08202" sboTerm="SBO:0000185" id="MAR08202" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08202" sboTerm="SBO:0000185" id="R_MAR08202" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -351760,7 +351683,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08202">
+            <rdf:Description rdf:about="#R_MAR08202">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GALGT2"/>
@@ -351771,13 +351694,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02328c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02328c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02328l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02328l" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08203" sboTerm="SBO:0000185" id="MAR08203" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08203" sboTerm="SBO:0000185" id="R_MAR08203" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -351785,7 +351708,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08203">
+            <rdf:Description rdf:about="#R_MAR08203">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GCALDDm"/>
@@ -351797,13 +351720,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01959c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01959c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01959l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01959l" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08208" sboTerm="SBO:0000185" id="MAR08208" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08208" sboTerm="SBO:0000185" id="R_MAR08208" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -351811,7 +351734,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08208">
+            <rdf:Description rdf:about="#R_MAR08208">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/SGALSIDEtl"/>
@@ -351823,13 +351746,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02947c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02947c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02947l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02947l" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08216" sboTerm="SBO:0000185" id="MAR08216" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08216" sboTerm="SBO:0000185" id="R_MAR08216" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -351837,7 +351760,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08216">
+            <rdf:Description rdf:about="#R_MAR08216">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/DKMPPD"/>
@@ -351849,13 +351772,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01694c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01694c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01694l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01694l" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08244" sboTerm="SBO:0000185" id="MAR08244" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08244" sboTerm="SBO:0000185" id="R_MAR08244" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -351863,7 +351786,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08244">
+            <rdf:Description rdf:about="#R_MAR08244">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CHOLt4"/>
@@ -351875,13 +351798,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02738c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02738c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02738l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02738l" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08355" sboTerm="SBO:0000185" id="MAR08355" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08355" sboTerm="SBO:0000185" id="R_MAR08355" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -351889,7 +351812,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08355">
+            <rdf:Description rdf:about="#R_MAR08355">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ABUTt2rL"/>
@@ -351901,18 +351824,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00970c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00970c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00970l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00970l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG13384"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08370" sboTerm="SBO:0000185" id="MAR08370" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08370" sboTerm="SBO:0000185" id="R_MAR08370" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -351920,7 +351843,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08370">
+            <rdf:Description rdf:about="#R_MAR08370">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ACGALtly"/>
@@ -351932,13 +351855,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02525l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02525l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02525c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02525c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08490" sboTerm="SBO:0000185" id="MAR08490" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08490" sboTerm="SBO:0000185" id="R_MAR08490" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -351946,7 +351869,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08490">
+            <rdf:Description rdf:about="#R_MAR08490">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_8490"/>
@@ -351956,13 +351879,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01644c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01644c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01644l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01644l" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08491" sboTerm="SBO:0000185" id="MAR08491" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08491" sboTerm="SBO:0000185" id="R_MAR08491" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -351970,7 +351893,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08491">
+            <rdf:Description rdf:about="#R_MAR08491">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_8491"/>
@@ -351980,13 +351903,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01639c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01639c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01639l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01639l" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08492" sboTerm="SBO:0000185" id="MAR08492" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08492" sboTerm="SBO:0000185" id="R_MAR08492" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -351994,7 +351917,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08492">
+            <rdf:Description rdf:about="#R_MAR08492">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_8492"/>
@@ -352004,13 +351927,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01686c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01686c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01686l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01686l" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08531" sboTerm="SBO:0000185" id="MAR08531" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08531" sboTerm="SBO:0000185" id="R_MAR08531" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -352018,7 +351941,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08531">
+            <rdf:Description rdf:about="#R_MAR08531">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FAOXC11"/>
@@ -352030,13 +351953,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01831c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01831c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01831l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01831l" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08588" sboTerm="SBO:0000185" id="MAR08588" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08588" sboTerm="SBO:0000185" id="R_MAR08588" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -352044,7 +351967,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08588">
+            <rdf:Description rdf:about="#R_MAR08588">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_8588"/>
@@ -352054,13 +351977,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02450c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02450c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02450l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02450l" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08590" sboTerm="SBO:0000185" id="MAR08590" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08590" sboTerm="SBO:0000185" id="R_MAR08590" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -352068,7 +351991,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08590">
+            <rdf:Description rdf:about="#R_MAR08590">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_8590"/>
@@ -352078,13 +352001,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02452c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02452c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02452l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02452l" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08688" sboTerm="SBO:0000185" id="MAR08688" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08688" sboTerm="SBO:0000185" id="R_MAR08688" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -352092,7 +352015,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08688">
+            <rdf:Description rdf:about="#R_MAR08688">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/DALAxt"/>
@@ -352106,18 +352029,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01638c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01638c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01638l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01638l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG13384"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08753" sboTerm="SBO:0000185" id="MAR08753" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08753" sboTerm="SBO:0000185" id="R_MAR08753" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -352125,7 +352048,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08753">
+            <rdf:Description rdf:about="#R_MAR08753">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/MEOHtly"/>
@@ -352139,13 +352062,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02470c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02470c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02470l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02470l" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08763" sboTerm="SBO:0000185" id="MAR08763" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08763" sboTerm="SBO:0000185" id="R_MAR08763" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -352153,7 +352076,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08763">
+            <rdf:Description rdf:about="#R_MAR08763">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/LCTStl"/>
@@ -352165,13 +352088,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02332c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02332c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02332l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02332l" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08765" sboTerm="SBO:0000185" id="MAR08765" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08765" sboTerm="SBO:0000185" id="R_MAR08765" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -352179,7 +352102,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08765">
+            <rdf:Description rdf:about="#R_MAR08765">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GAMt1r"/>
@@ -352191,13 +352114,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01910l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01910l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01910c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01910c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08858" sboTerm="SBO:0000185" id="MAR08858" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08858" sboTerm="SBO:0000185" id="R_MAR08858" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -352205,7 +352128,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08858">
+            <rdf:Description rdf:about="#R_MAR08858">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/UDPtl"/>
@@ -352217,13 +352140,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03106c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03106l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106l" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08875" sboTerm="SBO:0000185" id="MAR08875" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08875" sboTerm="SBO:0000185" id="R_MAR08875" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -352231,7 +352154,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08875">
+            <rdf:Description rdf:about="#R_MAR08875">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FUMAC"/>
@@ -352243,13 +352166,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01159l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01159l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01159c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01159c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08885" sboTerm="SBO:0000185" id="MAR08885" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08885" sboTerm="SBO:0000185" id="R_MAR08885" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -352257,7 +352180,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08885">
+            <rdf:Description rdf:about="#R_MAR08885">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GLCtly"/>
@@ -352269,13 +352192,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01965l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01965l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01965c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01965c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08887" sboTerm="SBO:0000185" id="MAR08887" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08887" sboTerm="SBO:0000185" id="R_MAR08887" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -352283,7 +352206,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08887">
+            <rdf:Description rdf:about="#R_MAR08887">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GLCURtly"/>
@@ -352295,18 +352218,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01973c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01973c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01973l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01973l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="MFS9"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08908" sboTerm="SBO:0000185" id="MAR08908" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08908" sboTerm="SBO:0000185" id="R_MAR08908" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -352314,7 +352237,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08908">
+            <rdf:Description rdf:about="#R_MAR08908">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/IDOURtly"/>
@@ -352326,18 +352249,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02384c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02384c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02384l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02384l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="MFS9"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08928" sboTerm="SBO:0000185" id="MAR08928" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08928" sboTerm="SBO:0000185" id="R_MAR08928" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -352345,7 +352268,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08928">
+            <rdf:Description rdf:about="#R_MAR08928">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PRODt2rL"/>
@@ -352357,18 +352280,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01742c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01742c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01742l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01742l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG13384"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR09672" sboTerm="SBO:0000185" id="MAR09672" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09672" sboTerm="SBO:0000185" id="R_MAR09672" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -352376,7 +352299,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09672">
+            <rdf:Description rdf:about="#R_MAR09672">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_9672"/>
@@ -352386,13 +352309,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM10005l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM10005l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM10005c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM10005c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR00612" sboTerm="SBO:0000185" id="MAR00612" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00612" sboTerm="SBO:0000185" id="R_MAR00612" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -352400,7 +352323,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00612">
+            <rdf:Description rdf:about="#R_MAR00612">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_0612"/>
@@ -352410,13 +352333,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01427l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01427l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01427r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01427r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03597" sboTerm="SBO:0000185" id="MAR03597" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03597" sboTerm="SBO:0000185" id="R_MAR03597" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -352424,7 +352347,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03597">
+            <rdf:Description rdf:about="#R_MAR03597">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_3597"/>
@@ -352434,13 +352357,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01451l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01451l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01451r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01451r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR04961" sboTerm="SBO:0000185" id="MAR04961" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04961" sboTerm="SBO:0000185" id="R_MAR04961" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -352449,7 +352372,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04961">
+            <rdf:Description rdf:about="#R_MAR04961">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/r0909"/>
@@ -352459,13 +352382,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02527l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02527l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02527r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02527r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05045" sboTerm="SBO:0000185" id="MAR05045" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05045" sboTerm="SBO:0000185" id="R_MAR05045" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -352473,7 +352396,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05045">
+            <rdf:Description rdf:about="#R_MAR05045">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/r1051"/>
@@ -352485,13 +352408,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01450l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01450r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05248" sboTerm="SBO:0000185" id="MAR05248" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05248" sboTerm="SBO:0000185" id="R_MAR05248" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -352500,7 +352423,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05248">
+            <rdf:Description rdf:about="#R_MAR05248">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_5248"/>
@@ -352510,13 +352433,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02958l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02958l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02958r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02958r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05249" sboTerm="SBO:0000185" id="MAR05249" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05249" sboTerm="SBO:0000185" id="R_MAR05249" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -352524,7 +352447,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05249">
+            <rdf:Description rdf:about="#R_MAR05249">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_5249"/>
@@ -352534,13 +352457,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02908l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02908l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02908r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02908r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05250" sboTerm="SBO:0000185" id="MAR05250" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05250" sboTerm="SBO:0000185" id="R_MAR05250" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -352548,7 +352471,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05250">
+            <rdf:Description rdf:about="#R_MAR05250">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_5250"/>
@@ -352558,13 +352481,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02750l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02750l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02750r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02750r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05251" sboTerm="SBO:0000185" id="MAR05251" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05251" sboTerm="SBO:0000185" id="R_MAR05251" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -352572,7 +352495,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05251">
+            <rdf:Description rdf:about="#R_MAR05251">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_5251"/>
@@ -352582,13 +352505,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02684l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02684l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02684r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02684r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05252" sboTerm="SBO:0000185" id="MAR05252" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05252" sboTerm="SBO:0000185" id="R_MAR05252" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -352596,7 +352519,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05252">
+            <rdf:Description rdf:about="#R_MAR05252">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_5252"/>
@@ -352606,13 +352529,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02685l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02685l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02685r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02685r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05253" sboTerm="SBO:0000185" id="MAR05253" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05253" sboTerm="SBO:0000185" id="R_MAR05253" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -352620,7 +352543,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05253">
+            <rdf:Description rdf:about="#R_MAR05253">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_5253"/>
@@ -352630,13 +352553,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02808l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02808l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02808r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02808r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05255" sboTerm="SBO:0000185" id="MAR05255" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05255" sboTerm="SBO:0000185" id="R_MAR05255" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -352644,7 +352567,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05255">
+            <rdf:Description rdf:about="#R_MAR05255">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_5255"/>
@@ -352654,13 +352577,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00656l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00656l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00656r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00656r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07198" sboTerm="SBO:0000185" id="MAR07198" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07198" sboTerm="SBO:0000185" id="R_MAR07198" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -352668,7 +352591,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07198">
+            <rdf:Description rdf:about="#R_MAR07198">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_7198"/>
@@ -352678,13 +352601,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00205l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00205l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00205r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00205r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07284" sboTerm="SBO:0000185" id="MAR07284" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07284" sboTerm="SBO:0000185" id="R_MAR07284" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -352692,7 +352615,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07284">
+            <rdf:Description rdf:about="#R_MAR07284">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/Asn_X_Ser_Thrtr"/>
@@ -352703,13 +352626,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00198l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00198l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00198r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00198r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09738" sboTerm="SBO:0000185" id="MAR09738" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09738" sboTerm="SBO:0000185" id="R_MAR09738" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -352717,7 +352640,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09738">
+            <rdf:Description rdf:about="#R_MAR09738">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_9738"/>
@@ -352727,13 +352650,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00003l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00003l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00003c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00003c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09739" sboTerm="SBO:0000185" id="MAR09739" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09739" sboTerm="SBO:0000185" id="R_MAR09739" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -352741,7 +352664,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09739">
+            <rdf:Description rdf:about="#R_MAR09739">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_9739"/>
@@ -352751,13 +352674,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00008l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00008l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00008c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00008c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09740" sboTerm="SBO:0000185" id="MAR09740" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09740" sboTerm="SBO:0000185" id="R_MAR09740" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -352765,7 +352688,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09740">
+            <rdf:Description rdf:about="#R_MAR09740">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_9740"/>
@@ -352775,13 +352698,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00010l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00010l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00010c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00010c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09741" sboTerm="SBO:0000185" id="MAR09741" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09741" sboTerm="SBO:0000185" id="R_MAR09741" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -352789,7 +352712,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09741">
+            <rdf:Description rdf:about="#R_MAR09741">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_9741"/>
@@ -352799,13 +352722,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00017l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00017l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00017c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00017c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09742" sboTerm="SBO:0000185" id="MAR09742" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09742" sboTerm="SBO:0000185" id="R_MAR09742" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -352813,7 +352736,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09742">
+            <rdf:Description rdf:about="#R_MAR09742">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_9742"/>
@@ -352823,13 +352746,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00019l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00019l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00019c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00019c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09743" sboTerm="SBO:0000185" id="MAR09743" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09743" sboTerm="SBO:0000185" id="R_MAR09743" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -352837,7 +352760,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09743">
+            <rdf:Description rdf:about="#R_MAR09743">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_9743"/>
@@ -352847,13 +352770,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00021l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00021l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00021c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00021c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09744" sboTerm="SBO:0000185" id="MAR09744" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09744" sboTerm="SBO:0000185" id="R_MAR09744" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -352861,7 +352784,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09744">
+            <rdf:Description rdf:about="#R_MAR09744">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_9744"/>
@@ -352871,13 +352794,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00094l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00094l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00094c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00094c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09745" sboTerm="SBO:0000185" id="MAR09745" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09745" sboTerm="SBO:0000185" id="R_MAR09745" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -352885,7 +352808,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09745">
+            <rdf:Description rdf:about="#R_MAR09745">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_9745"/>
@@ -352895,13 +352818,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00104l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00104l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00104c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00104c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09746" sboTerm="SBO:0000185" id="MAR09746" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09746" sboTerm="SBO:0000185" id="R_MAR09746" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -352909,7 +352832,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09746">
+            <rdf:Description rdf:about="#R_MAR09746">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_9746"/>
@@ -352919,13 +352842,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00111l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00111l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00111c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00111c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09747" sboTerm="SBO:0000185" id="MAR09747" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09747" sboTerm="SBO:0000185" id="R_MAR09747" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -352933,7 +352856,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09747">
+            <rdf:Description rdf:about="#R_MAR09747">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_9747"/>
@@ -352943,13 +352866,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00114l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00114l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00114c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00114c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09748" sboTerm="SBO:0000185" id="MAR09748" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09748" sboTerm="SBO:0000185" id="R_MAR09748" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -352957,7 +352880,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09748">
+            <rdf:Description rdf:about="#R_MAR09748">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_9748"/>
@@ -352967,13 +352890,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00115l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00115l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00115c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00115c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09749" sboTerm="SBO:0000185" id="MAR09749" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09749" sboTerm="SBO:0000185" id="R_MAR09749" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -352981,7 +352904,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09749">
+            <rdf:Description rdf:about="#R_MAR09749">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_9749"/>
@@ -352991,13 +352914,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00117l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00117l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00117c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00117c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09750" sboTerm="SBO:0000185" id="MAR09750" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09750" sboTerm="SBO:0000185" id="R_MAR09750" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -353005,7 +352928,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09750">
+            <rdf:Description rdf:about="#R_MAR09750">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_9750"/>
@@ -353015,13 +352938,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00128l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00128l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00128c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00128c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09751" sboTerm="SBO:0000185" id="MAR09751" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09751" sboTerm="SBO:0000185" id="R_MAR09751" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -353029,7 +352952,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09751">
+            <rdf:Description rdf:about="#R_MAR09751">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_9751"/>
@@ -353039,13 +352962,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00132l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00132l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00132c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00132c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09752" sboTerm="SBO:0000185" id="MAR09752" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09752" sboTerm="SBO:0000185" id="R_MAR09752" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -353053,7 +352976,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09752">
+            <rdf:Description rdf:about="#R_MAR09752">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_9752"/>
@@ -353063,13 +352986,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00135l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00135l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00135c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00135c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09753" sboTerm="SBO:0000185" id="MAR09753" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09753" sboTerm="SBO:0000185" id="R_MAR09753" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -353077,7 +353000,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09753">
+            <rdf:Description rdf:about="#R_MAR09753">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_9753"/>
@@ -353087,13 +353010,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00260l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00260l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00260c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00260c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09754" sboTerm="SBO:0000185" id="MAR09754" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09754" sboTerm="SBO:0000185" id="R_MAR09754" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -353101,7 +353024,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09754">
+            <rdf:Description rdf:about="#R_MAR09754">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_9754"/>
@@ -353111,13 +353034,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00265l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00265l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00265c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00265c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09755" sboTerm="SBO:0000185" id="MAR09755" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09755" sboTerm="SBO:0000185" id="R_MAR09755" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -353125,7 +353048,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09755">
+            <rdf:Description rdf:about="#R_MAR09755">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_9755"/>
@@ -353135,13 +353058,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00315l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00315l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00315c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00315c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09756" sboTerm="SBO:0000185" id="MAR09756" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09756" sboTerm="SBO:0000185" id="R_MAR09756" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -353149,7 +353072,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09756">
+            <rdf:Description rdf:about="#R_MAR09756">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_9756"/>
@@ -353159,13 +353082,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00341l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00341l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00341c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00341c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09757" sboTerm="SBO:0000185" id="MAR09757" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09757" sboTerm="SBO:0000185" id="R_MAR09757" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -353173,7 +353096,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09757">
+            <rdf:Description rdf:about="#R_MAR09757">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_9757"/>
@@ -353183,13 +353106,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01197l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01197l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01197c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01197c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09758" sboTerm="SBO:0000185" id="MAR09758" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09758" sboTerm="SBO:0000185" id="R_MAR09758" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -353197,7 +353120,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09758">
+            <rdf:Description rdf:about="#R_MAR09758">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_9758"/>
@@ -353207,13 +353130,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01207l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01207l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01207c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01207c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09759" sboTerm="SBO:0000185" id="MAR09759" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09759" sboTerm="SBO:0000185" id="R_MAR09759" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -353221,7 +353144,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09759">
+            <rdf:Description rdf:about="#R_MAR09759">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_9759"/>
@@ -353231,13 +353154,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01235l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01235l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01235c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01235c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09760" sboTerm="SBO:0000185" id="MAR09760" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09760" sboTerm="SBO:0000185" id="R_MAR09760" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -353245,7 +353168,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09760">
+            <rdf:Description rdf:about="#R_MAR09760">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_9760"/>
@@ -353255,13 +353178,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01238l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01238l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01238c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01238c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09761" sboTerm="SBO:0000185" id="MAR09761" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09761" sboTerm="SBO:0000185" id="R_MAR09761" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -353269,7 +353192,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09761">
+            <rdf:Description rdf:about="#R_MAR09761">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_9761"/>
@@ -353279,13 +353202,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01291l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01291l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01291c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01291c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09762" sboTerm="SBO:0000185" id="MAR09762" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09762" sboTerm="SBO:0000185" id="R_MAR09762" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -353293,7 +353216,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09762">
+            <rdf:Description rdf:about="#R_MAR09762">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/r0932"/>
@@ -353303,13 +353226,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01362l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01362l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01362c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01362c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09763" sboTerm="SBO:0000185" id="MAR09763" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09763" sboTerm="SBO:0000185" id="R_MAR09763" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -353317,7 +353240,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09763">
+            <rdf:Description rdf:about="#R_MAR09763">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_9763"/>
@@ -353327,13 +353250,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01373l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01373l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01373c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01373c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09764" sboTerm="SBO:0000185" id="MAR09764" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09764" sboTerm="SBO:0000185" id="R_MAR09764" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -353341,7 +353264,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09764">
+            <rdf:Description rdf:about="#R_MAR09764">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_9764"/>
@@ -353351,13 +353274,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01432l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01432l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01432c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01432c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09765" sboTerm="SBO:0000185" id="MAR09765" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09765" sboTerm="SBO:0000185" id="R_MAR09765" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -353365,7 +353288,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09765">
+            <rdf:Description rdf:about="#R_MAR09765">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_9765"/>
@@ -353375,13 +353298,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01582l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01582l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01582c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01582c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09766" sboTerm="SBO:0000185" id="MAR09766" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09766" sboTerm="SBO:0000185" id="R_MAR09766" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -353389,7 +353312,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09766">
+            <rdf:Description rdf:about="#R_MAR09766">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_9766"/>
@@ -353399,13 +353322,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01583l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01583l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01583c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01583c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09767" sboTerm="SBO:0000185" id="MAR09767" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09767" sboTerm="SBO:0000185" id="R_MAR09767" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -353413,7 +353336,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09767">
+            <rdf:Description rdf:about="#R_MAR09767">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_9767"/>
@@ -353423,13 +353346,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01584l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01584l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01584c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01584c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09768" sboTerm="SBO:0000185" id="MAR09768" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09768" sboTerm="SBO:0000185" id="R_MAR09768" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -353437,7 +353360,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09768">
+            <rdf:Description rdf:about="#R_MAR09768">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/VACCtl"/>
@@ -353447,13 +353370,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01585l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01585l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01585c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01585c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09769" sboTerm="SBO:0000185" id="MAR09769" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09769" sboTerm="SBO:0000185" id="R_MAR09769" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -353461,7 +353384,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09769">
+            <rdf:Description rdf:about="#R_MAR09769">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/CRVNCtl"/>
@@ -353471,13 +353394,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01689l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01689l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01689c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01689c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09770" sboTerm="SBO:0000185" id="MAR09770" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09770" sboTerm="SBO:0000185" id="R_MAR09770" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -353485,7 +353408,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09770">
+            <rdf:Description rdf:about="#R_MAR09770">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/r1368"/>
@@ -353495,13 +353418,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01696l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01696l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01696c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01696c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09771" sboTerm="SBO:0000185" id="MAR09771" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09771" sboTerm="SBO:0000185" id="R_MAR09771" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -353509,7 +353432,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09771">
+            <rdf:Description rdf:about="#R_MAR09771">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_9771"/>
@@ -353519,13 +353442,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01741l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01741l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01741c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01741c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09772" sboTerm="SBO:0000185" id="MAR09772" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09772" sboTerm="SBO:0000185" id="R_MAR09772" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -353533,7 +353456,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09772">
+            <rdf:Description rdf:about="#R_MAR09772">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_9772"/>
@@ -353543,13 +353466,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01771l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01771l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01771c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01771c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09773" sboTerm="SBO:0000185" id="MAR09773" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09773" sboTerm="SBO:0000185" id="R_MAR09773" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -353557,7 +353480,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09773">
+            <rdf:Description rdf:about="#R_MAR09773">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_9773"/>
@@ -353567,13 +353490,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01778l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01778l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01778c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01778c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09774" sboTerm="SBO:0000185" id="MAR09774" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09774" sboTerm="SBO:0000185" id="R_MAR09774" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -353581,7 +353504,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09774">
+            <rdf:Description rdf:about="#R_MAR09774">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/TMNDNCtl"/>
@@ -353591,13 +353514,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01784l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01784l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01784c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01784c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09775" sboTerm="SBO:0000185" id="MAR09775" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09775" sboTerm="SBO:0000185" id="R_MAR09775" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -353605,7 +353528,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09775">
+            <rdf:Description rdf:about="#R_MAR09775">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/r1299"/>
@@ -353615,13 +353538,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01932l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01932l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01932c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01932c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09776" sboTerm="SBO:0000185" id="MAR09776" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09776" sboTerm="SBO:0000185" id="R_MAR09776" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -353629,7 +353552,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09776">
+            <rdf:Description rdf:about="#R_MAR09776">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_9776"/>
@@ -353639,13 +353562,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02053l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02053l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02053c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02053c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09777" sboTerm="SBO:0000185" id="MAR09777" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09777" sboTerm="SBO:0000185" id="R_MAR09777" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -353653,7 +353576,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09777">
+            <rdf:Description rdf:about="#R_MAR09777">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_9777"/>
@@ -353663,13 +353586,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02344l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02344l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02344c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02344c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09778" sboTerm="SBO:0000185" id="MAR09778" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09778" sboTerm="SBO:0000185" id="R_MAR09778" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -353677,7 +353600,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09778">
+            <rdf:Description rdf:about="#R_MAR09778">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_9778"/>
@@ -353687,13 +353610,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02385l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02385l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02385c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02385c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09779" sboTerm="SBO:0000185" id="MAR09779" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09779" sboTerm="SBO:0000185" id="R_MAR09779" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -353701,7 +353624,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09779">
+            <rdf:Description rdf:about="#R_MAR09779">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/r0987"/>
@@ -353711,13 +353634,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02387l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02387l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02387c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02387c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09780" sboTerm="SBO:0000185" id="MAR09780" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09780" sboTerm="SBO:0000185" id="R_MAR09780" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -353725,7 +353648,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09780">
+            <rdf:Description rdf:about="#R_MAR09780">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/r1365"/>
@@ -353735,13 +353658,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02389l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02389l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02389c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02389c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09781" sboTerm="SBO:0000185" id="MAR09781" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09781" sboTerm="SBO:0000185" id="R_MAR09781" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -353749,7 +353672,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09781">
+            <rdf:Description rdf:about="#R_MAR09781">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_9781"/>
@@ -353759,13 +353682,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02456l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02456l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02456c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02456c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09782" sboTerm="SBO:0000185" id="MAR09782" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09782" sboTerm="SBO:0000185" id="R_MAR09782" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -353773,7 +353696,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09782">
+            <rdf:Description rdf:about="#R_MAR09782">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_9782"/>
@@ -353783,13 +353706,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02457l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02457l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02457c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02457c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09783" sboTerm="SBO:0000185" id="MAR09783" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09783" sboTerm="SBO:0000185" id="R_MAR09783" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -353797,7 +353720,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09783">
+            <rdf:Description rdf:about="#R_MAR09783">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_9783"/>
@@ -353807,13 +353730,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02494l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02494l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02494c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02494c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09784" sboTerm="SBO:0000185" id="MAR09784" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09784" sboTerm="SBO:0000185" id="R_MAR09784" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -353821,7 +353744,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09784">
+            <rdf:Description rdf:about="#R_MAR09784">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_9784"/>
@@ -353831,13 +353754,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02564l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02564l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02564c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02564c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09785" sboTerm="SBO:0000185" id="MAR09785" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09785" sboTerm="SBO:0000185" id="R_MAR09785" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -353845,7 +353768,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09785">
+            <rdf:Description rdf:about="#R_MAR09785">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_9785"/>
@@ -353855,13 +353778,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02613l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02613l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02613c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02613c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09786" sboTerm="SBO:0000185" id="MAR09786" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09786" sboTerm="SBO:0000185" id="R_MAR09786" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -353869,7 +353792,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09786">
+            <rdf:Description rdf:about="#R_MAR09786">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/r1302"/>
@@ -353879,13 +353802,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02646l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02646l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02646c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02646c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09787" sboTerm="SBO:0000185" id="MAR09787" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09787" sboTerm="SBO:0000185" id="R_MAR09787" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -353893,7 +353816,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09787">
+            <rdf:Description rdf:about="#R_MAR09787">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_9787"/>
@@ -353903,13 +353826,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02648l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02648l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02648c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02648c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09788" sboTerm="SBO:0000185" id="MAR09788" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09788" sboTerm="SBO:0000185" id="R_MAR09788" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -353917,7 +353840,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09788">
+            <rdf:Description rdf:about="#R_MAR09788">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/r0937"/>
@@ -353927,13 +353850,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02674l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02674l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02674c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02674c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09789" sboTerm="SBO:0000185" id="MAR09789" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09789" sboTerm="SBO:0000185" id="R_MAR09789" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -353941,7 +353864,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09789">
+            <rdf:Description rdf:about="#R_MAR09789">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/r1304"/>
@@ -353951,13 +353874,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02675l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02675l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02675c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02675c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09790" sboTerm="SBO:0000185" id="MAR09790" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09790" sboTerm="SBO:0000185" id="R_MAR09790" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -353965,7 +353888,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09790">
+            <rdf:Description rdf:about="#R_MAR09790">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_9790"/>
@@ -353975,13 +353898,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02690l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02690l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02690c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02690c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09791" sboTerm="SBO:0000185" id="MAR09791" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09791" sboTerm="SBO:0000185" id="R_MAR09791" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -353989,7 +353912,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09791">
+            <rdf:Description rdf:about="#R_MAR09791">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_9791"/>
@@ -353999,13 +353922,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02745l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02745l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02745c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02745c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09792" sboTerm="SBO:0000185" id="MAR09792" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09792" sboTerm="SBO:0000185" id="R_MAR09792" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -354013,7 +353936,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09792">
+            <rdf:Description rdf:about="#R_MAR09792">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_9792"/>
@@ -354023,13 +353946,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02938l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02938l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02938c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02938c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09793" sboTerm="SBO:0000185" id="MAR09793" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09793" sboTerm="SBO:0000185" id="R_MAR09793" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -354037,7 +353960,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09793">
+            <rdf:Description rdf:about="#R_MAR09793">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/r0984"/>
@@ -354047,16 +353970,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02939l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02939l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02939c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02939c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Fatp1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR09794" sboTerm="SBO:0000185" id="MAR09794" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09794" sboTerm="SBO:0000185" id="R_MAR09794" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -354064,7 +353987,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09794">
+            <rdf:Description rdf:about="#R_MAR09794">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_9794"/>
@@ -354074,13 +353997,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03045l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03045l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03045c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03045c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09795" sboTerm="SBO:0000185" id="MAR09795" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09795" sboTerm="SBO:0000185" id="R_MAR09795" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -354088,7 +354011,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09795">
+            <rdf:Description rdf:about="#R_MAR09795">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_9795"/>
@@ -354098,13 +354021,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03051l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03051l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03051c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03051c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09796" sboTerm="SBO:0000185" id="MAR09796" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09796" sboTerm="SBO:0000185" id="R_MAR09796" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -354112,7 +354035,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09796">
+            <rdf:Description rdf:about="#R_MAR09796">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_9796"/>
@@ -354122,13 +354045,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03153l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03153l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03153c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03153c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR00652" sboTerm="SBO:0000185" id="MAR00652" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00652" sboTerm="SBO:0000185" id="R_MAR00652" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -354136,7 +354059,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00652">
+            <rdf:Description rdf:about="#R_MAR00652">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_0652"/>
@@ -354146,13 +354069,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01428c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01428c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01428g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01428g" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR00717" sboTerm="SBO:0000185" id="MAR00717" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00717" sboTerm="SBO:0000185" id="R_MAR00717" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -354160,7 +354083,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00717">
+            <rdf:Description rdf:about="#R_MAR00717">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_0717"/>
@@ -354170,13 +354093,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01590c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01590c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01590g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01590g" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR00731" sboTerm="SBO:0000185" id="MAR00731" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00731" sboTerm="SBO:0000185" id="R_MAR00731" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -354184,7 +354107,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00731">
+            <rdf:Description rdf:about="#R_MAR00731">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/CERT1gt"/>
@@ -354194,16 +354117,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01430c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01430c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01430g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01430g" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="cert"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00732" sboTerm="SBO:0000185" id="MAR00732" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00732" sboTerm="SBO:0000185" id="R_MAR00732" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -354211,7 +354134,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00732">
+            <rdf:Description rdf:about="#R_MAR00732">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/COAtg"/>
@@ -354223,13 +354146,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01597g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597g" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR00734" sboTerm="SBO:0000185" id="MAR00734" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00734" sboTerm="SBO:0000185" id="R_MAR00734" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -354237,7 +354160,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00734">
+            <rdf:Description rdf:about="#R_MAR00734">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/PCHOL_HStg"/>
@@ -354247,13 +354170,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02684c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02684c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02684g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02684g" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR00917" sboTerm="SBO:0000185" id="MAR00917" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00917" sboTerm="SBO:0000185" id="R_MAR00917" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -354261,7 +354184,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00917">
+            <rdf:Description rdf:about="#R_MAR00917">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_0917"/>
@@ -354271,13 +354194,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03114c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03114c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03114g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03114g" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR00918" sboTerm="SBO:0000185" id="MAR00918" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00918" sboTerm="SBO:0000185" id="R_MAR00918" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -354285,7 +354208,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00918">
+            <rdf:Description rdf:about="#R_MAR00918">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/UDPGLCtg"/>
@@ -354297,12 +354220,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03107c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03114g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03107c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03114g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03107g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03114c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03107g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03114c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -354312,7 +354235,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01916" sboTerm="SBO:0000185" id="MAR01916" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01916" sboTerm="SBO:0000185" id="R_MAR01916" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -354320,7 +354243,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01916">
+            <rdf:Description rdf:about="#R_MAR01916">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_1916"/>
@@ -354332,10 +354255,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01450c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01450g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450g" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -354344,7 +354267,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04125" sboTerm="SBO:0000185" id="MAR04125" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04125" sboTerm="SBO:0000185" id="R_MAR04125" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -354352,7 +354275,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04125">
+            <rdf:Description rdf:about="#R_MAR04125">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/UDPXYLtg"/>
@@ -354364,18 +354287,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03112c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03114g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03112c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03114g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03112g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03114c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03112g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03114c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Efr"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04892" sboTerm="SBO:0000185" id="MAR04892" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04892" sboTerm="SBO:0000185" id="R_MAR04892" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -354383,7 +354306,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04892">
+            <rdf:Description rdf:about="#R_MAR04892">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/H2Otg"/>
@@ -354397,13 +354320,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040g" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR04902" sboTerm="SBO:0000185" id="MAR04902" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04902" sboTerm="SBO:0000185" id="R_MAR04902" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -354411,7 +354334,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04902">
+            <rdf:Description rdf:about="#R_MAR04902">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_4902"/>
@@ -354421,13 +354344,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02630g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630g" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR04955" sboTerm="SBO:0000185" id="MAR04955" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04955" sboTerm="SBO:0000185" id="R_MAR04955" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -354435,7 +354358,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04955">
+            <rdf:Description rdf:about="#R_MAR04955">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_4955"/>
@@ -354445,13 +354368,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01712g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01712g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01712c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01712c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR06577" sboTerm="SBO:0000185" id="MAR06577" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06577" sboTerm="SBO:0000185" id="R_MAR06577" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -354459,7 +354382,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06577">
+            <rdf:Description rdf:about="#R_MAR06577">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_6577"/>
@@ -354469,13 +354392,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02750c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02750c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02750g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02750g" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR06578" sboTerm="SBO:0000185" id="MAR06578" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06578" sboTerm="SBO:0000185" id="R_MAR06578" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -354483,7 +354406,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06578">
+            <rdf:Description rdf:about="#R_MAR06578">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_6578"/>
@@ -354493,13 +354416,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01371g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371g" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07201" sboTerm="SBO:0000185" id="MAR07201" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07201" sboTerm="SBO:0000185" id="R_MAR07201" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -354507,7 +354430,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07201">
+            <rdf:Description rdf:about="#R_MAR07201">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/XSERtg"/>
@@ -354519,13 +354442,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03156r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03156r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03156g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03156g" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07204" sboTerm="SBO:0000185" id="MAR07204" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07204" sboTerm="SBO:0000185" id="R_MAR07204" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -354533,7 +354456,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07204">
+            <rdf:Description rdf:about="#R_MAR07204">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/UDPGLCAtg"/>
@@ -354545,15 +354468,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03109c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03114g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03109c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03114g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03109g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03114c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03109g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03114c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07331" sboTerm="SBO:0000185" id="MAR07331" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07331" sboTerm="SBO:0000185" id="R_MAR07331" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -354561,7 +354484,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07331">
+            <rdf:Description rdf:about="#R_MAR07331">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GMPtg"/>
@@ -354573,13 +354496,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02016c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02016c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02016g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02016g" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07431" sboTerm="SBO:0000185" id="MAR07431" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07431" sboTerm="SBO:0000185" id="R_MAR07431" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -354587,7 +354510,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07431">
+            <rdf:Description rdf:about="#R_MAR07431">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_7431"/>
@@ -354597,13 +354520,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00205c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00205c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00205g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00205g" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07433" sboTerm="SBO:0000185" id="MAR07433" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07433" sboTerm="SBO:0000185" id="R_MAR07433" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -354611,7 +354534,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07433">
+            <rdf:Description rdf:about="#R_MAR07433">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/UGALNACtg"/>
@@ -354623,18 +354546,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03110c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03114g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03110c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03114g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03110g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03114c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03110g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03114c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Ugalt"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07434" sboTerm="SBO:0000185" id="MAR07434" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07434" sboTerm="SBO:0000185" id="R_MAR07434" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -354642,7 +354565,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07434">
+            <rdf:Description rdf:about="#R_MAR07434">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/UGLCNACtg"/>
@@ -354655,18 +354578,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03111c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03114g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03111c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03114g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03111g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03114c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03111g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03114c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="frc"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07435" sboTerm="SBO:0000185" id="MAR07435" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07435" sboTerm="SBO:0000185" id="R_MAR07435" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -354674,7 +354597,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07435">
+            <rdf:Description rdf:about="#R_MAR07435">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_7435"/>
@@ -354684,13 +354607,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03111c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03111c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03111g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03111g" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07437" sboTerm="SBO:0000185" id="MAR07437" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07437" sboTerm="SBO:0000185" id="R_MAR07437" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -354698,7 +354621,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07437">
+            <rdf:Description rdf:about="#R_MAR07437">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_7437"/>
@@ -354708,13 +354631,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02907g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02907g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02907c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02907c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07675" sboTerm="SBO:0000185" id="MAR07675" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07675" sboTerm="SBO:0000185" id="R_MAR07675" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -354722,7 +354645,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07675">
+            <rdf:Description rdf:about="#R_MAR07675">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GLCtg"/>
@@ -354735,16 +354658,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01965c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01965c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01965g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01965g" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Glut1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07693" sboTerm="SBO:0000185" id="MAR07693" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07693" sboTerm="SBO:0000185" id="R_MAR07693" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -354752,7 +354675,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07693">
+            <rdf:Description rdf:about="#R_MAR07693">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CMPACNAtg"/>
@@ -354764,18 +354687,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01590g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01592c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01590g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01592c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01590c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01592g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01590c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01592g" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Ugalt"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07694" sboTerm="SBO:0000185" id="MAR07694" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07694" sboTerm="SBO:0000185" id="R_MAR07694" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -354783,7 +354706,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07694">
+            <rdf:Description rdf:about="#R_MAR07694">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/Kt3g"/>
@@ -354795,12 +354718,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02200g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02200g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02200c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02200c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -354809,7 +354732,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07695" sboTerm="SBO:0000185" id="MAR07695" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07695" sboTerm="SBO:0000185" id="R_MAR07695" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -354817,7 +354740,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07695">
+            <rdf:Description rdf:about="#R_MAR07695">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/NAt3_1g"/>
@@ -354829,12 +354752,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -354843,7 +354766,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07733" sboTerm="SBO:0000185" id="MAR07733" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07733" sboTerm="SBO:0000185" id="R_MAR07733" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -354851,7 +354774,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07733">
+            <rdf:Description rdf:about="#R_MAR07733">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GDPFUCtg"/>
@@ -354863,18 +354786,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01950c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02016g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01950c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02016g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01950g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02016c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01950g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02016c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="nac"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07740" sboTerm="SBO:0000185" id="MAR07740" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07740" sboTerm="SBO:0000185" id="R_MAR07740" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -354882,7 +354805,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07740">
+            <rdf:Description rdf:about="#R_MAR07740">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PAPStg"/>
@@ -354894,16 +354817,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02682c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02682c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02682g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02682g" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="sll"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07743" sboTerm="SBO:0000185" id="MAR07743" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07743" sboTerm="SBO:0000185" id="R_MAR07743" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -354911,7 +354834,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07743">
+            <rdf:Description rdf:about="#R_MAR07743">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_7743"/>
@@ -354921,15 +354844,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01948c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01948c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01948g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01948g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039g" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07759" sboTerm="SBO:0000185" id="MAR07759" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07759" sboTerm="SBO:0000185" id="R_MAR07759" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -354937,7 +354860,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07759">
+            <rdf:Description rdf:about="#R_MAR07759">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_7759"/>
@@ -354947,13 +354870,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01588c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01588c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01588g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01588g" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07761" sboTerm="SBO:0000185" id="MAR07761" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07761" sboTerm="SBO:0000185" id="R_MAR07761" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -354961,7 +354884,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07761">
+            <rdf:Description rdf:about="#R_MAR07761">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_7761"/>
@@ -354971,16 +354894,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01736c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01736c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01736g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01736g" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Ent3"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07793" sboTerm="SBO:0000185" id="MAR07793" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07793" sboTerm="SBO:0000185" id="R_MAR07793" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -354988,7 +354911,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07793">
+            <rdf:Description rdf:about="#R_MAR07793">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/Htg"/>
@@ -355002,13 +354925,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039g" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08084" sboTerm="SBO:0000185" id="MAR08084" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08084" sboTerm="SBO:0000185" id="R_MAR08084" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -355016,7 +354939,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08084">
+            <rdf:Description rdf:about="#R_MAR08084">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_8084"/>
@@ -355026,13 +354949,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01433c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01433c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01433g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01433g" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08086" sboTerm="SBO:0000185" id="MAR08086" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08086" sboTerm="SBO:0000185" id="R_MAR08086" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -355040,7 +354963,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08086">
+            <rdf:Description rdf:about="#R_MAR08086">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_8086"/>
@@ -355050,13 +354973,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01419c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01419c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01419g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01419g" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08145" sboTerm="SBO:0000185" id="MAR08145" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08145" sboTerm="SBO:0000185" id="R_MAR08145" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -355064,7 +354987,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08145">
+            <rdf:Description rdf:about="#R_MAR08145">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GALGT1"/>
@@ -355075,13 +354998,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02328c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02328c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02328g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02328g" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08146" sboTerm="SBO:0000185" id="MAR08146" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08146" sboTerm="SBO:0000185" id="R_MAR08146" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -355089,7 +355012,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08146">
+            <rdf:Description rdf:about="#R_MAR08146">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CERT2rt"/>
@@ -355101,16 +355024,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01972c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01972c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01972g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01972g" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="cert"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08153" sboTerm="SBO:0000185" id="MAR08153" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08153" sboTerm="SBO:0000185" id="R_MAR08153" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -355118,7 +355041,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08153">
+            <rdf:Description rdf:about="#R_MAR08153">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GALASE11ly"/>
@@ -355130,13 +355053,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01919c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01919c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01919g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01919g" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08157" sboTerm="SBO:0000185" id="MAR08157" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08157" sboTerm="SBO:0000185" id="R_MAR08157" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -355144,7 +355067,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08157">
+            <rdf:Description rdf:about="#R_MAR08157">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ACN13ACNGALGBSIDEtg"/>
@@ -355156,13 +355079,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02902c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02902c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02902g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02902g" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08160" sboTerm="SBO:0000185" id="MAR08160" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08160" sboTerm="SBO:0000185" id="R_MAR08160" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -355170,7 +355093,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08160">
+            <rdf:Description rdf:about="#R_MAR08160">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ACN23ACNGALGBSIDEtg"/>
@@ -355182,13 +355105,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02903c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02903c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02903g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02903g" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08163" sboTerm="SBO:0000185" id="MAR08163" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08163" sboTerm="SBO:0000185" id="R_MAR08163" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -355196,7 +355119,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08163">
+            <rdf:Description rdf:about="#R_MAR08163">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ACNACNGALGBSIDEtg"/>
@@ -355208,13 +355131,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01711c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01711c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01711g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01711g" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08193" sboTerm="SBO:0000185" id="MAR08193" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08193" sboTerm="SBO:0000185" id="R_MAR08193" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -355222,7 +355145,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08193">
+            <rdf:Description rdf:about="#R_MAR08193">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ACGALtlg"/>
@@ -355234,13 +355157,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02525c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02525c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02525g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02525g" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08195" sboTerm="SBO:0000185" id="MAR08195" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08195" sboTerm="SBO:0000185" id="R_MAR08195" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -355248,7 +355171,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08195">
+            <rdf:Description rdf:about="#R_MAR08195">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ACGBGBSIDEtg"/>
@@ -355260,13 +355183,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01391c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01391c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01391g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01391g" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08199" sboTerm="SBO:0000185" id="MAR08199" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08199" sboTerm="SBO:0000185" id="R_MAR08199" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -355274,7 +355197,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08199">
+            <rdf:Description rdf:about="#R_MAR08199">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ACGAGBSIDEtg"/>
@@ -355286,13 +355209,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01324c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01324c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01324g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01324g" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08205" sboTerm="SBO:0000185" id="MAR08205" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08205" sboTerm="SBO:0000185" id="R_MAR08205" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -355300,7 +355223,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08205">
+            <rdf:Description rdf:about="#R_MAR08205">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GALT"/>
@@ -355312,13 +355235,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01679c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01679c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01679g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01679g" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08207" sboTerm="SBO:0000185" id="MAR08207" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08207" sboTerm="SBO:0000185" id="R_MAR08207" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -355326,7 +355249,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08207">
+            <rdf:Description rdf:about="#R_MAR08207">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/SGALSIDEtg"/>
@@ -355338,13 +355261,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02947c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02947c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02947g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02947g" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08213" sboTerm="SBO:0000185" id="MAR08213" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08213" sboTerm="SBO:0000185" id="R_MAR08213" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -355352,7 +355275,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08213">
+            <rdf:Description rdf:about="#R_MAR08213">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/DINt"/>
@@ -355364,13 +355287,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01695c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01695c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01695g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01695g" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08215" sboTerm="SBO:0000185" id="MAR08215" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08215" sboTerm="SBO:0000185" id="R_MAR08215" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -355378,7 +355301,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08215">
+            <rdf:Description rdf:about="#R_MAR08215">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/DITPtn"/>
@@ -355390,13 +355313,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01694c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01694c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01694g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01694g" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08222" sboTerm="SBO:0000185" id="MAR08222" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08222" sboTerm="SBO:0000185" id="R_MAR08222" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -355404,7 +355327,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08222">
+            <rdf:Description rdf:about="#R_MAR08222">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FUM"/>
@@ -355416,13 +355339,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01861c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01861c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01861g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01861g" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08230" sboTerm="SBO:0000185" id="MAR08230" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08230" sboTerm="SBO:0000185" id="R_MAR08230" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -355430,7 +355353,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08230">
+            <rdf:Description rdf:about="#R_MAR08230">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/OAGD3tg"/>
@@ -355442,13 +355365,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01244c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01244c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01244g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01244g" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08232" sboTerm="SBO:0000185" id="MAR08232" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08232" sboTerm="SBO:0000185" id="R_MAR08232" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -355456,7 +355379,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08232">
+            <rdf:Description rdf:about="#R_MAR08232">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/OAGT3tg"/>
@@ -355468,13 +355391,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01245c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01245c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01245g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01245g" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08241" sboTerm="SBO:0000185" id="MAR08241" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08241" sboTerm="SBO:0000185" id="R_MAR08241" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -355482,7 +355405,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08241">
+            <rdf:Description rdf:about="#R_MAR08241">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/SPHMYLNtg"/>
@@ -355494,13 +355417,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02908c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02908c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02908g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02908g" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08243" sboTerm="SBO:0000185" id="MAR08243" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08243" sboTerm="SBO:0000185" id="R_MAR08243" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -355508,7 +355431,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08243">
+            <rdf:Description rdf:about="#R_MAR08243">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CHOLPtl"/>
@@ -355520,13 +355443,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02738c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02738c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02738g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02738g" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08252" sboTerm="SBO:0000185" id="MAR08252" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08252" sboTerm="SBO:0000185" id="R_MAR08252" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -355534,7 +355457,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08252">
+            <rdf:Description rdf:about="#R_MAR08252">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GALGLUSIDEtl"/>
@@ -355546,13 +355469,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01917c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01917c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01917g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01917g" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08259" sboTerm="SBO:0000185" id="MAR08259" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08259" sboTerm="SBO:0000185" id="R_MAR08259" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -355560,7 +355483,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08259">
+            <rdf:Description rdf:about="#R_MAR08259">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/F6Tg"/>
@@ -355572,13 +355495,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01801g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01801g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01801l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01801l" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08265" sboTerm="SBO:0000185" id="MAR08265" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08265" sboTerm="SBO:0000185" id="R_MAR08265" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -355586,7 +355509,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08265">
+            <rdf:Description rdf:about="#R_MAR08265">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FUCASE2ly"/>
@@ -355598,13 +355521,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01850c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01850c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01850g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01850g" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08269" sboTerm="SBO:0000185" id="MAR08269" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08269" sboTerm="SBO:0000185" id="R_MAR08269" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -355612,7 +355535,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08269">
+            <rdf:Description rdf:about="#R_MAR08269">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FUCGALGBSIDEtg"/>
@@ -355624,13 +355547,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01859c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01859c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01859g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01859g" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08272" sboTerm="SBO:0000185" id="MAR08272" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08272" sboTerm="SBO:0000185" id="R_MAR08272" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -355638,7 +355561,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08272">
+            <rdf:Description rdf:about="#R_MAR08272">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FUCACNGAL14ACGLCGALGLUSIDEtg"/>
@@ -355650,13 +355573,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01999c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01999c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01999g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01999g" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08282" sboTerm="SBO:0000185" id="MAR08282" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08282" sboTerm="SBO:0000185" id="R_MAR08282" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -355664,7 +355587,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08282">
+            <rdf:Description rdf:about="#R_MAR08282">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GALFUCGALACGLCGAL14ACGLCGALGLUSIDEtg"/>
@@ -355676,13 +355599,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01914c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01914c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01914g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01914g" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08289" sboTerm="SBO:0000185" id="MAR08289" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08289" sboTerm="SBO:0000185" id="R_MAR08289" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -355690,7 +355613,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08289">
+            <rdf:Description rdf:about="#R_MAR08289">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ACGALFUCGALACGALFUC12GAL14ACGLCGALGLUSIDEtg"/>
@@ -355702,13 +355625,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03096c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03096c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03096g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03096g" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08296" sboTerm="SBO:0000185" id="MAR08296" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08296" sboTerm="SBO:0000185" id="R_MAR08296" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -355716,7 +355639,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08296">
+            <rdf:Description rdf:about="#R_MAR08296">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ACGALFUCGALACGALFUCGALACGLCGAL14ACGLCGALGLUSIDEtg"/>
@@ -355728,13 +355651,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03098c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03098c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03098g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03098g" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08299" sboTerm="SBO:0000185" id="MAR08299" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08299" sboTerm="SBO:0000185" id="R_MAR08299" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -355742,7 +355665,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08299">
+            <rdf:Description rdf:about="#R_MAR08299">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GALGALFUCFUCGALACGLCGALACGLCGAL14ACGLCGALGLUSIDEtg"/>
@@ -355753,13 +355676,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01915c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01915c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01915g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01915g" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08303" sboTerm="SBO:0000185" id="MAR08303" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08303" sboTerm="SBO:0000185" id="R_MAR08303" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -355767,7 +355690,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08303">
+            <rdf:Description rdf:about="#R_MAR08303">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GALGALGALTHCRMtg"/>
@@ -355779,13 +355702,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01916c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01916c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01916g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01916g" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08310" sboTerm="SBO:0000185" id="MAR08310" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08310" sboTerm="SBO:0000185" id="R_MAR08310" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -355793,7 +355716,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08310">
+            <rdf:Description rdf:about="#R_MAR08310">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FUCFUCGALACGLCGALGLUSIDEtg"/>
@@ -355805,13 +355728,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01852c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01852c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01852g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01852g" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08312" sboTerm="SBO:0000185" id="MAR08312" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08312" sboTerm="SBO:0000185" id="R_MAR08312" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -355819,7 +355742,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08312">
+            <rdf:Description rdf:about="#R_MAR08312">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FUCFUCFUCGALACGLCGAL14ACGLCGALGLUSIDEtg"/>
@@ -355831,13 +355754,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01851c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01851c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01851g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01851g" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08314" sboTerm="SBO:0000185" id="MAR08314" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08314" sboTerm="SBO:0000185" id="R_MAR08314" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -355845,7 +355768,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08314">
+            <rdf:Description rdf:about="#R_MAR08314">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FUCGAL14ACGLCGALGLUSIDEtg"/>
@@ -355857,13 +355780,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01853c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01853c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01853g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01853g" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08320" sboTerm="SBO:0000185" id="MAR08320" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08320" sboTerm="SBO:0000185" id="R_MAR08320" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -355871,7 +355794,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08320">
+            <rdf:Description rdf:about="#R_MAR08320">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FUCFUC12GAL14ACGLCGALGLUSIDEtg"/>
@@ -355883,13 +355806,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02198c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02198c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02198g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02198g" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08323" sboTerm="SBO:0000185" id="MAR08323" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08323" sboTerm="SBO:0000185" id="R_MAR08323" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -355897,7 +355820,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08323">
+            <rdf:Description rdf:about="#R_MAR08323">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FUCGALFUCGALACGLCGALGLUSIDEtg"/>
@@ -355909,13 +355832,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02331c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02331c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02331g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02331g" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08328" sboTerm="SBO:0000185" id="MAR08328" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08328" sboTerm="SBO:0000185" id="R_MAR08328" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -355923,7 +355846,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08328">
+            <rdf:Description rdf:about="#R_MAR08328">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ACNACNGAL14ACGLCGALGLUSIDEtg"/>
@@ -355935,13 +355858,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00744c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00744c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00744g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00744g" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08335" sboTerm="SBO:0000185" id="MAR08335" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08335" sboTerm="SBO:0000185" id="R_MAR08335" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -355949,7 +355872,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08335">
+            <rdf:Description rdf:about="#R_MAR08335">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FUC14GALACGLCGALGLUSIDEtg"/>
@@ -355961,13 +355884,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02164c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02164c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02164g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02164g" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08338" sboTerm="SBO:0000185" id="MAR08338" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08338" sboTerm="SBO:0000185" id="R_MAR08338" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -355975,7 +355898,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08338">
+            <rdf:Description rdf:about="#R_MAR08338">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ACNGALACGLCGAL14ACGLCGALGLUSIDEtg"/>
@@ -355987,13 +355910,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03138c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03138c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03138g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03138g" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08496" sboTerm="SBO:0000185" id="MAR08496" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08496" sboTerm="SBO:0000185" id="R_MAR08496" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -356001,7 +355924,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08496">
+            <rdf:Description rdf:about="#R_MAR08496">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ACtg"/>
@@ -356015,10 +355938,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01252c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01252c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01252g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01252g" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -356027,7 +355950,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08524" sboTerm="SBO:0000185" id="MAR08524" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08524" sboTerm="SBO:0000185" id="R_MAR08524" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -356035,7 +355958,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08524">
+            <rdf:Description rdf:about="#R_MAR08524">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CHOLtn"/>
@@ -356049,13 +355972,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01513c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01513c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01513g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01513g" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08527" sboTerm="SBO:0000185" id="MAR08527" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08527" sboTerm="SBO:0000185" id="R_MAR08527" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -356063,7 +355986,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08527">
+            <rdf:Description rdf:about="#R_MAR08527">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PE_HStg"/>
@@ -356075,13 +355998,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02685c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02685c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02685g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02685g" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08673" sboTerm="SBO:0000185" id="MAR08673" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08673" sboTerm="SBO:0000185" id="R_MAR08673" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -356089,7 +356012,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08673">
+            <rdf:Description rdf:about="#R_MAR08673">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CO2tm"/>
@@ -356101,13 +356024,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01596c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01596c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01596g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01596g" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08793" sboTerm="SBO:0000185" id="MAR08793" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08793" sboTerm="SBO:0000185" id="R_MAR08793" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -356115,7 +356038,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08793">
+            <rdf:Description rdf:about="#R_MAR08793">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PAPtg"/>
@@ -356127,13 +356050,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02681g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02681g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02681c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02681c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08834" sboTerm="SBO:0000185" id="MAR08834" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08834" sboTerm="SBO:0000185" id="R_MAR08834" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -356141,7 +356064,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08834">
+            <rdf:Description rdf:about="#R_MAR08834">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PItg"/>
@@ -356153,13 +356076,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02751g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08856" sboTerm="SBO:0000185" id="MAR08856" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08856" sboTerm="SBO:0000185" id="R_MAR08856" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -356167,7 +356090,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08856">
+            <rdf:Description rdf:about="#R_MAR08856">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/UDPGALt2g"/>
@@ -356179,13 +356102,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03107c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03107c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03107g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03107g" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08857" sboTerm="SBO:0000185" id="MAR08857" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08857" sboTerm="SBO:0000185" id="R_MAR08857" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -356193,7 +356116,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08857">
+            <rdf:Description rdf:about="#R_MAR08857">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/UDPGLCtg"/>
@@ -356205,12 +356128,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03108c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03114g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03108c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03114g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03108g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03114c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03108g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03114c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -356220,7 +356143,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08874" sboTerm="SBO:0000185" id="MAR08874" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08874" sboTerm="SBO:0000185" id="R_MAR08874" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -356228,7 +356151,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08874">
+            <rdf:Description rdf:about="#R_MAR08874">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FUCASEly"/>
@@ -356240,13 +356163,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02199c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02199c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02199g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02199g" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08880" sboTerm="SBO:0000185" id="MAR08880" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08880" sboTerm="SBO:0000185" id="R_MAR08880" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -356254,7 +356177,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08880">
+            <rdf:Description rdf:about="#R_MAR08880">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GD1Ctg"/>
@@ -356266,13 +356189,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01944c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01944c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01944g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01944g" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08882" sboTerm="SBO:0000185" id="MAR08882" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08882" sboTerm="SBO:0000185" id="R_MAR08882" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -356280,7 +356203,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08882">
+            <rdf:Description rdf:about="#R_MAR08882">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GDCHOLAtx"/>
@@ -356292,13 +356215,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01945c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01945c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01945g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01945g" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08895" sboTerm="SBO:0000185" id="MAR08895" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08895" sboTerm="SBO:0000185" id="R_MAR08895" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -356306,7 +356229,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08895">
+            <rdf:Description rdf:about="#R_MAR08895">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GP1CALPHAtg"/>
@@ -356318,13 +356241,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02019c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02019c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02019g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02019g" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08897" sboTerm="SBO:0000185" id="MAR08897" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08897" sboTerm="SBO:0000185" id="R_MAR08897" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -356332,7 +356255,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08897">
+            <rdf:Description rdf:about="#R_MAR08897">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GP1Ctg"/>
@@ -356344,13 +356267,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02018c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02018c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02018g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02018g" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08900" sboTerm="SBO:0000185" id="MAR08900" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08900" sboTerm="SBO:0000185" id="R_MAR08900" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -356358,7 +356281,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08900">
+            <rdf:Description rdf:about="#R_MAR08900">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GQ1BALPHAtg"/>
@@ -356370,13 +356293,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02024c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02024c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02024g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02024g" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08902" sboTerm="SBO:0000185" id="MAR08902" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08902" sboTerm="SBO:0000185" id="R_MAR08902" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -356384,7 +356307,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08902">
+            <rdf:Description rdf:about="#R_MAR08902">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GQ1Btg"/>
@@ -356396,13 +356319,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02023c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02023c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02023g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02023g" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08904" sboTerm="SBO:0000185" id="MAR08904" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08904" sboTerm="SBO:0000185" id="R_MAR08904" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -356410,7 +356333,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08904">
+            <rdf:Description rdf:about="#R_MAR08904">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GT1Atg"/>
@@ -356422,13 +356345,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02028c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02028c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02028g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02028g" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08920" sboTerm="SBO:0000185" id="MAR08920" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08920" sboTerm="SBO:0000185" id="R_MAR08920" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -356436,7 +356359,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08920">
+            <rdf:Description rdf:about="#R_MAR08920">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/MANtg"/>
@@ -356448,13 +356371,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02453g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02453g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02453c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02453c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09199" sboTerm="SBO:0000185" id="MAR09199" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09199" sboTerm="SBO:0000185" id="R_MAR09199" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -356462,7 +356385,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09199">
+            <rdf:Description rdf:about="#R_MAR09199">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_9199"/>
@@ -356472,16 +356395,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03157c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03157c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03157g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03157g" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="ZnT86D"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR09664" sboTerm="SBO:0000185" id="MAR09664" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09664" sboTerm="SBO:0000185" id="R_MAR09664" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -356489,7 +356412,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09664">
+            <rdf:Description rdf:about="#R_MAR09664">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/DAG_HStg"/>
@@ -356499,13 +356422,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00240g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00240g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00240c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00240c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09665" sboTerm="SBO:0000185" id="MAR09665" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09665" sboTerm="SBO:0000185" id="R_MAR09665" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -356513,7 +356436,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09665">
+            <rdf:Description rdf:about="#R_MAR09665">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_9665"/>
@@ -356523,13 +356446,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01334g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01334c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09666" sboTerm="SBO:0000185" id="MAR09666" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09666" sboTerm="SBO:0000185" id="R_MAR09666" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -356537,7 +356460,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09666">
+            <rdf:Description rdf:about="#R_MAR09666">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_9666"/>
@@ -356547,13 +356470,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02728g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02728g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02728c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02728c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09667" sboTerm="SBO:0000185" id="MAR09667" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09667" sboTerm="SBO:0000185" id="R_MAR09667" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -356561,7 +356484,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09667">
+            <rdf:Description rdf:about="#R_MAR09667">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_9667"/>
@@ -356571,13 +356494,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02516g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02516g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02516c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02516c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09668" sboTerm="SBO:0000185" id="MAR09668" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09668" sboTerm="SBO:0000185" id="R_MAR09668" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -356585,7 +356508,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09668">
+            <rdf:Description rdf:about="#R_MAR09668">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/GNCORE2t"/>
@@ -356595,13 +356518,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01955g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01955g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01955c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01955c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09669" sboTerm="SBO:0000185" id="MAR09669" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09669" sboTerm="SBO:0000185" id="R_MAR09669" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -356609,7 +356532,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09669">
+            <rdf:Description rdf:about="#R_MAR09669">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_9669"/>
@@ -356619,13 +356542,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01610g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01610g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01610c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01610c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09670" sboTerm="SBO:0000185" id="MAR09670" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09670" sboTerm="SBO:0000185" id="R_MAR09670" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -356633,7 +356556,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09670">
+            <rdf:Description rdf:about="#R_MAR09670">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_9670"/>
@@ -356643,13 +356566,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01612g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01612g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01612c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01612c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09671" sboTerm="SBO:0000185" id="MAR09671" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09671" sboTerm="SBO:0000185" id="R_MAR09671" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -356657,7 +356580,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09671">
+            <rdf:Description rdf:about="#R_MAR09671">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_9671"/>
@@ -356667,13 +356590,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01613g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01613g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01613c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01613c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07182" sboTerm="SBO:0000185" id="MAR07182" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07182" sboTerm="SBO:0000185" id="R_MAR07182" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -356681,7 +356604,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07182">
+            <rdf:Description rdf:about="#R_MAR07182">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_7182"/>
@@ -356691,13 +356614,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01872g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01872g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01872e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01872e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07330" sboTerm="SBO:0000185" id="MAR07330" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07330" sboTerm="SBO:0000185" id="R_MAR07330" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -356705,7 +356628,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07330">
+            <rdf:Description rdf:about="#R_MAR07330">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_7330"/>
@@ -356715,13 +356638,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01870g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01870g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01870e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01870e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07432" sboTerm="SBO:0000185" id="MAR07432" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07432" sboTerm="SBO:0000185" id="R_MAR07432" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -356729,7 +356652,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07432">
+            <rdf:Description rdf:about="#R_MAR07432">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/Ser_Thrtg"/>
@@ -356741,13 +356664,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00205g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00205g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00205l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00205l" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR04313" sboTerm="SBO:0000185" id="MAR04313" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04313" sboTerm="SBO:0000185" id="R_MAR04313" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -356755,7 +356678,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04313">
+            <rdf:Description rdf:about="#R_MAR04313">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_4313"/>
@@ -356765,13 +356688,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01682c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01682c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01682g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01682g" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07307" sboTerm="SBO:0000185" id="MAR07307" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07307" sboTerm="SBO:0000185" id="R_MAR07307" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -356779,7 +356702,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07307">
+            <rdf:Description rdf:about="#R_MAR07307">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/M8MASNterg"/>
@@ -356791,13 +356714,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00153r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00153r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00153g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00153g" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01809" sboTerm="SBO:0000185" id="MAR01809" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01809" sboTerm="SBO:0000185" id="R_MAR01809" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -356805,7 +356728,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01809">
+            <rdf:Description rdf:about="#R_MAR01809">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/XOLTRIOLtm"/>
@@ -356817,13 +356740,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01078c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01078c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01078r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01078r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR00020" sboTerm="SBO:0000185" id="MAR00020" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00020" sboTerm="SBO:0000185" id="R_MAR00020" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -356831,7 +356754,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00020">
+            <rdf:Description rdf:about="#R_MAR00020">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_0020"/>
@@ -356841,13 +356764,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01451c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01451c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01451r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01451r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR00462" sboTerm="SBO:0000185" id="MAR00462" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00462" sboTerm="SBO:0000185" id="R_MAR00462" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -356855,7 +356778,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00462">
+            <rdf:Description rdf:about="#R_MAR00462">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_0462"/>
@@ -356865,13 +356788,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00656c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00656c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00656r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00656r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR00464" sboTerm="SBO:0000185" id="MAR00464" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00464" sboTerm="SBO:0000185" id="R_MAR00464" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -356879,7 +356802,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00464">
+            <rdf:Description rdf:about="#R_MAR00464">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PE_HStg"/>
@@ -356891,13 +356814,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02685c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02685c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02685r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02685r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR00466" sboTerm="SBO:0000185" id="MAR00466" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00466" sboTerm="SBO:0000185" id="R_MAR00466" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -356905,7 +356828,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00466">
+            <rdf:Description rdf:about="#R_MAR00466">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PS_HStg"/>
@@ -356917,13 +356840,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02808c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02808c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02808r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02808r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR00467" sboTerm="SBO:0000185" id="MAR00467" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00467" sboTerm="SBO:0000185" id="R_MAR00467" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -356931,7 +356854,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00467">
+            <rdf:Description rdf:about="#R_MAR00467">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_0467"/>
@@ -356941,13 +356864,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02750c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02750c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02750r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02750r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR00664" sboTerm="SBO:0000185" id="MAR00664" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00664" sboTerm="SBO:0000185" id="R_MAR00664" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -356956,7 +356879,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00664">
+            <rdf:Description rdf:about="#R_MAR00664">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_0664"/>
@@ -356966,16 +356889,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02958c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02958c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02958r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02958r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="inaE"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00730" sboTerm="SBO:0000185" id="MAR00730" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00730" sboTerm="SBO:0000185" id="R_MAR00730" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -356984,7 +356907,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00730">
+            <rdf:Description rdf:about="#R_MAR00730">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CERT1gt"/>
@@ -356996,10 +356919,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01430c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01430c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01430r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01430r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -357011,7 +356934,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00768" sboTerm="SBO:0000185" id="MAR00768" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00768" sboTerm="SBO:0000185" id="R_MAR00768" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -357020,7 +356943,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00768">
+            <rdf:Description rdf:about="#R_MAR00768">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/CERT2rt"/>
@@ -357030,16 +356953,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01972c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01972c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01972r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01972r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="cert"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00771" sboTerm="SBO:0000185" id="MAR00771" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00771" sboTerm="SBO:0000185" id="R_MAR00771" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -357047,7 +356970,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00771">
+            <rdf:Description rdf:about="#R_MAR00771">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/SPHMYLNtg"/>
@@ -357059,13 +356982,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02908c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02908c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02908r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02908r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR00966" sboTerm="SBO:0000185" id="MAR00966" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00966" sboTerm="SBO:0000185" id="R_MAR00966" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -357073,7 +356996,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00966">
+            <rdf:Description rdf:about="#R_MAR00966">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_0966"/>
@@ -357083,13 +357006,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01040r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01035" sboTerm="SBO:0000185" id="MAR01035" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01035" sboTerm="SBO:0000185" id="R_MAR01035" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -357097,7 +357020,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01035">
+            <rdf:Description rdf:about="#R_MAR01035">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GTHRDtr"/>
@@ -357109,13 +357032,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02026c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02026r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01143" sboTerm="SBO:0000185" id="MAR01143" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01143" sboTerm="SBO:0000185" id="R_MAR01143" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -357123,7 +357046,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01143">
+            <rdf:Description rdf:about="#R_MAR01143">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_1143"/>
@@ -357133,13 +357056,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01124c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01124c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01124r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01124r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01189" sboTerm="SBO:0000185" id="MAR01189" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01189" sboTerm="SBO:0000185" id="R_MAR01189" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -357147,7 +357070,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01189">
+            <rdf:Description rdf:about="#R_MAR01189">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_1189"/>
@@ -357157,13 +357080,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01118c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01118c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01118r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01118r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01240" sboTerm="SBO:0000185" id="MAR01240" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01240" sboTerm="SBO:0000185" id="R_MAR01240" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -357171,7 +357094,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01240">
+            <rdf:Description rdf:about="#R_MAR01240">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_1240"/>
@@ -357181,13 +357104,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00256r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00256r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00256c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00256c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01252" sboTerm="SBO:0000185" id="MAR01252" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01252" sboTerm="SBO:0000185" id="R_MAR01252" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -357195,7 +357118,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01252">
+            <rdf:Description rdf:about="#R_MAR01252">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_1252"/>
@@ -357205,13 +357128,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00582c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00582c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00582r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00582r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01269" sboTerm="SBO:0000185" id="MAR01269" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01269" sboTerm="SBO:0000185" id="R_MAR01269" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -357219,7 +357142,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01269">
+            <rdf:Description rdf:about="#R_MAR01269">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_1269"/>
@@ -357229,13 +357152,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00258c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00258c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00258r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00258r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01306" sboTerm="SBO:0000185" id="MAR01306" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01306" sboTerm="SBO:0000185" id="R_MAR01306" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -357243,7 +357166,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01306">
+            <rdf:Description rdf:about="#R_MAR01306">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_1306"/>
@@ -357253,13 +357176,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02792c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02792c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02792r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02792r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01309" sboTerm="SBO:0000185" id="MAR01309" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01309" sboTerm="SBO:0000185" id="R_MAR01309" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -357267,7 +357190,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01309">
+            <rdf:Description rdf:about="#R_MAR01309">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/PROSTGI2tr"/>
@@ -357277,13 +357200,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02795c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02795c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02795r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02795r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01311" sboTerm="SBO:0000185" id="MAR01311" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01311" sboTerm="SBO:0000185" id="R_MAR01311" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -357291,7 +357214,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01311">
+            <rdf:Description rdf:about="#R_MAR01311">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_1311"/>
@@ -357301,13 +357224,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02794c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02794c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02794r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02794r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01316" sboTerm="SBO:0000185" id="MAR01316" name="Transport of Thromboxane B2" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01316" sboTerm="SBO:0000185" id="R_MAR01316" name="Transport of Thromboxane B2" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -357315,7 +357238,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01316">
+            <rdf:Description rdf:about="#R_MAR01316">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106236"/>
@@ -357328,13 +357251,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02995c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02995c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02995r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02995r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01331" sboTerm="SBO:0000185" id="MAR01331" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01331" sboTerm="SBO:0000185" id="R_MAR01331" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -357342,7 +357265,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01331">
+            <rdf:Description rdf:about="#R_MAR01331">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_1331"/>
@@ -357354,13 +357277,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02783c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02783c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02783r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02783r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01530" sboTerm="SBO:0000185" id="MAR01530" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01530" sboTerm="SBO:0000185" id="R_MAR01530" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -357368,7 +357291,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01530">
+            <rdf:Description rdf:about="#R_MAR01530">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CHSTEROLtrc"/>
@@ -357381,13 +357304,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01450c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01450r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01672" sboTerm="SBO:0000185" id="MAR01672" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01672" sboTerm="SBO:0000185" id="R_MAR01672" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -357396,7 +357319,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01672">
+            <rdf:Description rdf:about="#R_MAR01672">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/XOL7AONEtr"/>
@@ -357408,13 +357331,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01182c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01182c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01182r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01182r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01937" sboTerm="SBO:0000185" id="MAR01937" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01937" sboTerm="SBO:0000185" id="R_MAR01937" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -357422,7 +357345,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01937">
+            <rdf:Description rdf:about="#R_MAR01937">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/PRGNLONEtr"/>
@@ -357432,13 +357355,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02763c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02763c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02763r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02763r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01998" sboTerm="SBO:0000185" id="MAR01998" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01998" sboTerm="SBO:0000185" id="R_MAR01998" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -357446,7 +357369,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01998">
+            <rdf:Description rdf:about="#R_MAR01998">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/CRTSLtr"/>
@@ -357456,13 +357379,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01615c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01615c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01615r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01615r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR02039" sboTerm="SBO:0000185" id="MAR02039" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02039" sboTerm="SBO:0000185" id="R_MAR02039" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -357470,7 +357393,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02039">
+            <rdf:Description rdf:about="#R_MAR02039">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/ESTRONEtr"/>
@@ -357480,13 +357403,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01790c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01790c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01790r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01790r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR02066" sboTerm="SBO:0000185" id="MAR02066" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02066" sboTerm="SBO:0000185" id="R_MAR02066" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -357494,7 +357417,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02066">
+            <rdf:Description rdf:about="#R_MAR02066">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_2066"/>
@@ -357504,13 +357427,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01791c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01791c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01791r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01791r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR02081" sboTerm="SBO:0000185" id="MAR02081" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02081" sboTerm="SBO:0000185" id="R_MAR02081" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -357518,7 +357441,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02081">
+            <rdf:Description rdf:about="#R_MAR02081">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_2081"/>
@@ -357528,13 +357451,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01793c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01793c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01793r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01793r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR02092" sboTerm="SBO:0000185" id="MAR02092" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02092" sboTerm="SBO:0000185" id="R_MAR02092" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -357542,7 +357465,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02092">
+            <rdf:Description rdf:about="#R_MAR02092">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_2092"/>
@@ -357552,13 +357475,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00412c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00412c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00412r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00412r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR02103" sboTerm="SBO:0000185" id="MAR02103" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02103" sboTerm="SBO:0000185" id="R_MAR02103" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -357566,7 +357489,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02103">
+            <rdf:Description rdf:about="#R_MAR02103">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_2103"/>
@@ -357576,13 +357499,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00410c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00410c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00410r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00410r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR02554" sboTerm="SBO:0000185" id="MAR02554" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02554" sboTerm="SBO:0000185" id="R_MAR02554" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -357590,7 +357513,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02554">
+            <rdf:Description rdf:about="#R_MAR02554">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_2554"/>
@@ -357600,13 +357523,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02365c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02365c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02365r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02365r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR02569" sboTerm="SBO:0000185" id="MAR02569" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02569" sboTerm="SBO:0000185" id="R_MAR02569" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -357614,7 +357537,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02569">
+            <rdf:Description rdf:about="#R_MAR02569">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_2569"/>
@@ -357624,13 +357547,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01784c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01784c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01784r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01784r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR02777" sboTerm="SBO:0000185" id="MAR02777" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02777" sboTerm="SBO:0000185" id="R_MAR02777" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -357639,7 +357562,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02777">
+            <rdf:Description rdf:about="#R_MAR02777">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR96906"/>
@@ -357651,16 +357574,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02348r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Orct"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03953" sboTerm="SBO:0000185" id="MAR03953" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03953" sboTerm="SBO:0000185" id="R_MAR03953" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -357668,7 +357591,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03953">
+            <rdf:Description rdf:about="#R_MAR03953">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/HMR_3953"/>
@@ -357679,13 +357602,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01169c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01169c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01169r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01169r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR04123" sboTerm="SBO:0000185" id="MAR04123" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04123" sboTerm="SBO:0000185" id="R_MAR04123" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -357694,7 +357617,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04123">
+            <rdf:Description rdf:about="#R_MAR04123">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105066"/>
@@ -357705,13 +357628,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03109c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03109c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03109r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03109r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR04126" sboTerm="SBO:0000185" id="MAR04126" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04126" sboTerm="SBO:0000185" id="R_MAR04126" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -357720,7 +357643,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04126">
+            <rdf:Description rdf:about="#R_MAR04126">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/UDPXYLter"/>
@@ -357732,15 +357655,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03112r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03114c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03112r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03114c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03112c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03114r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03112c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03114r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR04765" sboTerm="SBO:0000185" id="MAR04765" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04765" sboTerm="SBO:0000185" id="R_MAR04765" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -357749,7 +357672,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04765">
+            <rdf:Description rdf:about="#R_MAR04765">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/BILIRUBtr"/>
@@ -357761,13 +357684,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01396c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01396c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01396r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01396r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR04846" sboTerm="SBO:0000185" id="MAR04846" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04846" sboTerm="SBO:0000185" id="R_MAR04846" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -357776,7 +357699,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04846">
+            <rdf:Description rdf:about="#R_MAR04846">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ATP2ter"/>
@@ -357788,15 +357711,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01334c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01334r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR04856" sboTerm="SBO:0000185" id="MAR04856" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04856" sboTerm="SBO:0000185" id="R_MAR04856" name="alpha-D-Glucose 6-phosphate ketol-isomerase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -357805,7 +357728,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04856">
+            <rdf:Description rdf:about="#R_MAR04856">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/G6Pter"/>
@@ -357820,16 +357743,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01968c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01968c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01968r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01968r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Pgi"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04860" sboTerm="SBO:0000185" id="MAR04860" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04860" sboTerm="SBO:0000185" id="R_MAR04860" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -357838,7 +357761,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04860">
+            <rdf:Description rdf:about="#R_MAR04860">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR100848"/>
@@ -357849,13 +357772,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02171c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02171c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02171r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02171r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR04876" sboTerm="SBO:0000185" id="MAR04876" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04876" sboTerm="SBO:0000185" id="R_MAR04876" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -357863,7 +357786,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04876">
+            <rdf:Description rdf:about="#R_MAR04876">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR103411"/>
@@ -357874,13 +357797,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02845c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02845c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02845r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02845r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR04877" sboTerm="SBO:0000185" id="MAR04877" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04877" sboTerm="SBO:0000185" id="R_MAR04877" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -357889,7 +357812,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04877">
+            <rdf:Description rdf:about="#R_MAR04877">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105400"/>
@@ -357900,13 +357823,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02846c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02846c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02846r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02846r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR04878" sboTerm="SBO:0000185" id="MAR04878" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04878" sboTerm="SBO:0000185" id="R_MAR04878" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -357915,7 +357838,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04878">
+            <rdf:Description rdf:about="#R_MAR04878">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105071"/>
@@ -357926,13 +357849,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03108c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03108c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03108r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03108r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR04879" sboTerm="SBO:0000185" id="MAR04879" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04879" sboTerm="SBO:0000185" id="R_MAR04879" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -357941,7 +357864,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04879">
+            <rdf:Description rdf:about="#R_MAR04879">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/UDPGLCter"/>
@@ -357953,15 +357876,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03108c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03114r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03108c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03114r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03108r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03114c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03108r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03114c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR04880" sboTerm="SBO:0000185" id="MAR04880" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04880" sboTerm="SBO:0000185" id="R_MAR04880" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -357970,7 +357893,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04880">
+            <rdf:Description rdf:about="#R_MAR04880">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/UDPGLCAter"/>
@@ -357982,18 +357905,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03109c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03114r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03109c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03114r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03109r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03114c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03109r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03114c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="frc"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04881" sboTerm="SBO:0000185" id="MAR04881" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04881" sboTerm="SBO:0000185" id="R_MAR04881" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -358002,7 +357925,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04881">
+            <rdf:Description rdf:about="#R_MAR04881">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/UGLCNACtg"/>
@@ -358015,18 +357938,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03111c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03114r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03111c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03114r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03111r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03114c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03111r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03114c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="frc"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04883" sboTerm="SBO:0000185" id="MAR04883" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04883" sboTerm="SBO:0000185" id="R_MAR04883" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -358035,7 +357958,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04883">
+            <rdf:Description rdf:about="#R_MAR04883">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/H2Oter"/>
@@ -358049,13 +357972,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR04894" sboTerm="SBO:0000185" id="MAR04894" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04894" sboTerm="SBO:0000185" id="R_MAR04894" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -358063,7 +357986,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04894">
+            <rdf:Description rdf:about="#R_MAR04894">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/O2ter"/>
@@ -358075,13 +357998,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02630r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR04906" sboTerm="SBO:0000185" id="MAR04906" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04906" sboTerm="SBO:0000185" id="R_MAR04906" name="ATP:ADP phosphatransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -358090,7 +358013,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04906">
+            <rdf:Description rdf:about="#R_MAR04906">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ATP1ter"/>
@@ -358103,15 +358026,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01285r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR04913" sboTerm="SBO:0000185" id="MAR04913" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04913" sboTerm="SBO:0000185" id="R_MAR04913" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -358120,7 +358043,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04913">
+            <rdf:Description rdf:about="#R_MAR04913">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/COAtr"/>
@@ -358132,13 +358055,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR04917" sboTerm="SBO:0000185" id="MAR04917" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04917" sboTerm="SBO:0000185" id="R_MAR04917" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -358147,7 +358070,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04917">
+            <rdf:Description rdf:about="#R_MAR04917">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CO2tg"/>
@@ -358159,13 +358082,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01596c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01596c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01596r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01596r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR04941" sboTerm="SBO:0000185" id="MAR04941" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04941" sboTerm="SBO:0000185" id="R_MAR04941" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -358174,7 +358097,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04941">
+            <rdf:Description rdf:about="#R_MAR04941">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/r0886"/>
@@ -358184,13 +358107,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01590c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01590c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01590r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01590r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR04942" sboTerm="SBO:0000185" id="MAR04942" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04942" sboTerm="SBO:0000185" id="R_MAR04942" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -358199,7 +358122,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04942">
+            <rdf:Description rdf:about="#R_MAR04942">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FORtr"/>
@@ -358213,10 +358136,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01833c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01833c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01833r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01833r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -358225,7 +358148,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04960" sboTerm="SBO:0000185" id="MAR04960" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04960" sboTerm="SBO:0000185" id="R_MAR04960" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -358234,7 +358157,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04960">
+            <rdf:Description rdf:about="#R_MAR04960">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR95252"/>
@@ -358245,13 +358168,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02527c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02527c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02527r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02527r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05004" sboTerm="SBO:0000185" id="MAR05004" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05004" sboTerm="SBO:0000185" id="R_MAR05004" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -358260,7 +358183,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05004">
+            <rdf:Description rdf:about="#R_MAR05004">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105407"/>
@@ -358272,12 +358195,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01396c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01396c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01396r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01396r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -358286,7 +358209,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05012" sboTerm="SBO:0000185" id="MAR05012" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05012" sboTerm="SBO:0000185" id="R_MAR05012" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -358294,7 +358217,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05012">
+            <rdf:Description rdf:about="#R_MAR05012">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR95277"/>
@@ -358305,13 +358228,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02524r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02524r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02524e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02524e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05027" sboTerm="SBO:0000185" id="MAR05027" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05027" sboTerm="SBO:0000185" id="R_MAR05027" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -358320,7 +358243,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05027">
+            <rdf:Description rdf:about="#R_MAR05027">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GLCter"/>
@@ -358333,16 +358256,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01965c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01965c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01965r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01965r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Glut1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05203" sboTerm="SBO:0000185" id="MAR05203" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05203" sboTerm="SBO:0000185" id="R_MAR05203" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -358351,7 +358274,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05203">
+            <rdf:Description rdf:about="#R_MAR05203">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/r1127"/>
@@ -358362,13 +358285,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01351c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01351c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01351r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01351r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05205" sboTerm="SBO:0000185" id="MAR05205" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05205" sboTerm="SBO:0000185" id="R_MAR05205" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -358377,7 +358300,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05205">
+            <rdf:Description rdf:about="#R_MAR05205">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105391"/>
@@ -358389,13 +358312,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01350c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01350c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01350r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01350r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05207" sboTerm="SBO:0000185" id="MAR05207" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05207" sboTerm="SBO:0000185" id="R_MAR05207" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -358404,7 +358327,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05207">
+            <rdf:Description rdf:about="#R_MAR05207">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/r1131"/>
@@ -358415,13 +358338,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01353c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01353c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01353r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01353r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05209" sboTerm="SBO:0000185" id="MAR05209" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05209" sboTerm="SBO:0000185" id="R_MAR05209" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -358430,7 +358353,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05209">
+            <rdf:Description rdf:about="#R_MAR05209">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/r1132"/>
@@ -358441,13 +358364,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01354c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01354c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01354r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01354r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05210" sboTerm="SBO:0000185" id="MAR05210" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05210" sboTerm="SBO:0000185" id="R_MAR05210" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -358456,7 +358379,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05210">
+            <rdf:Description rdf:about="#R_MAR05210">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/r1133"/>
@@ -358467,13 +358390,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01355c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01355c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01355r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01355r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05211" sboTerm="SBO:0000185" id="MAR05211" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05211" sboTerm="SBO:0000185" id="R_MAR05211" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -358482,7 +358405,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05211">
+            <rdf:Description rdf:about="#R_MAR05211">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/r1128"/>
@@ -358493,13 +358416,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01359c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01359c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01359r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01359r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05245" sboTerm="SBO:0000185" id="MAR05245" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05245" sboTerm="SBO:0000185" id="R_MAR05245" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -358507,7 +358430,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05245">
+            <rdf:Description rdf:about="#R_MAR05245">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_5245"/>
@@ -358517,13 +358440,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03147r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03147r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03147e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03147e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05342" sboTerm="SBO:0000185" id="MAR05342" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05342" sboTerm="SBO:0000185" id="R_MAR05342" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -358532,7 +358455,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05342">
+            <rdf:Description rdf:about="#R_MAR05342">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PIter"/>
@@ -358545,18 +358468,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="VGlut"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05347" sboTerm="SBO:0000185" id="MAR05347" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05347" sboTerm="SBO:0000185" id="R_MAR05347" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -358565,7 +358488,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05347">
+            <rdf:Description rdf:about="#R_MAR05347">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PPItr"/>
@@ -358577,13 +358500,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02759r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05354" sboTerm="SBO:0000185" id="MAR05354" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05354" sboTerm="SBO:0000185" id="R_MAR05354" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -358591,7 +358514,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05354">
+            <rdf:Description rdf:about="#R_MAR05354">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105436"/>
@@ -358602,13 +358525,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01425c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01425c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01425r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01425r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR06385" sboTerm="SBO:0000185" id="MAR06385" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06385" sboTerm="SBO:0000185" id="R_MAR06385" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -358617,7 +358540,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06385">
+            <rdf:Description rdf:about="#R_MAR06385">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/UDPGALtg"/>
@@ -358630,18 +358553,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03107c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03114r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03107c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03114r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03107r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03114c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03107r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03114c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Ugalt"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06387" sboTerm="SBO:0000185" id="MAR06387" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06387" sboTerm="SBO:0000185" id="R_MAR06387" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -358650,7 +358573,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06387">
+            <rdf:Description rdf:about="#R_MAR06387">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR102849"/>
@@ -358661,15 +358584,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02519r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR06388" sboTerm="SBO:0000185" id="MAR06388" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06388" sboTerm="SBO:0000185" id="R_MAR06388" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -358678,7 +358601,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06388">
+            <rdf:Description rdf:about="#R_MAR06388">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR106329"/>
@@ -358689,15 +358612,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02751r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR06425" sboTerm="SBO:0000185" id="MAR06425" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06425" sboTerm="SBO:0000185" id="R_MAR06425" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -358705,7 +358628,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06425">
+            <rdf:Description rdf:about="#R_MAR06425">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_6425"/>
@@ -358715,13 +358638,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01330c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01330c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01330r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01330r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR06430" sboTerm="SBO:0000185" id="MAR06430" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06430" sboTerm="SBO:0000185" id="R_MAR06430" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -358729,7 +358652,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06430">
+            <rdf:Description rdf:about="#R_MAR06430">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_6430"/>
@@ -358739,13 +358662,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00345r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00345r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00345c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00345c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR06440" sboTerm="SBO:0000185" id="MAR06440" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06440" sboTerm="SBO:0000185" id="R_MAR06440" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -358753,7 +358676,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06440">
+            <rdf:Description rdf:about="#R_MAR06440">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_6440"/>
@@ -358763,13 +358686,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01938c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01938c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01938r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01938r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR06445" sboTerm="SBO:0000185" id="MAR06445" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06445" sboTerm="SBO:0000185" id="R_MAR06445" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -358777,7 +358700,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06445">
+            <rdf:Description rdf:about="#R_MAR06445">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_6445"/>
@@ -358787,13 +358710,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00347r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00347r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00347c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00347c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR06463" sboTerm="SBO:0000185" id="MAR06463" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06463" sboTerm="SBO:0000185" id="R_MAR06463" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -358801,7 +358724,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06463">
+            <rdf:Description rdf:about="#R_MAR06463">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_6463"/>
@@ -358811,13 +358734,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01935c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01935c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01935r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01935r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR06468" sboTerm="SBO:0000185" id="MAR06468" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06468" sboTerm="SBO:0000185" id="R_MAR06468" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -358825,7 +358748,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06468">
+            <rdf:Description rdf:about="#R_MAR06468">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_6468"/>
@@ -358835,13 +358758,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00346c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00346c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00346r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00346r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR06475" sboTerm="SBO:0000185" id="MAR06475" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06475" sboTerm="SBO:0000185" id="R_MAR06475" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -358849,7 +358772,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06475">
+            <rdf:Description rdf:about="#R_MAR06475">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_6475"/>
@@ -358859,13 +358782,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01327c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01327c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01327r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01327r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR06480" sboTerm="SBO:0000185" id="MAR06480" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06480" sboTerm="SBO:0000185" id="R_MAR06480" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -358873,7 +358796,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06480">
+            <rdf:Description rdf:about="#R_MAR06480">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_6480"/>
@@ -358883,13 +358806,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00344r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00344r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00344c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00344c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR06629" sboTerm="SBO:0000185" id="MAR06629" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06629" sboTerm="SBO:0000185" id="R_MAR06629" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -358897,7 +358820,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06629">
+            <rdf:Description rdf:about="#R_MAR06629">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_6629"/>
@@ -358907,13 +358830,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02834c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02834c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02834r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02834r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR06797" sboTerm="SBO:0000185" id="MAR06797" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06797" sboTerm="SBO:0000185" id="R_MAR06797" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -358921,7 +358844,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06797">
+            <rdf:Description rdf:about="#R_MAR06797">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_6797"/>
@@ -358931,13 +358854,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03052c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03052c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03052r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03052r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR06990" sboTerm="SBO:0000185" id="MAR06990" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06990" sboTerm="SBO:0000185" id="R_MAR06990" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -358945,7 +358868,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06990">
+            <rdf:Description rdf:about="#R_MAR06990">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_6990"/>
@@ -358955,13 +358878,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02174c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02174c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02174r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02174r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07257" sboTerm="SBO:0000185" id="MAR07257" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07257" sboTerm="SBO:0000185" id="R_MAR07257" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -358969,7 +358892,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07257">
+            <rdf:Description rdf:about="#R_MAR07257">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/DOLP_Lter"/>
@@ -358983,13 +358906,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01733r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01733r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01733c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01733c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07272" sboTerm="SBO:0000185" id="MAR07272" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07272" sboTerm="SBO:0000185" id="R_MAR07272" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -358997,7 +358920,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07272">
+            <rdf:Description rdf:about="#R_MAR07272">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/DOLMANP_Lter"/>
@@ -359010,13 +358933,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01734c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01734c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01734r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01734r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07273" sboTerm="SBO:0000185" id="MAR07273" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07273" sboTerm="SBO:0000185" id="R_MAR07273" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -359024,7 +358947,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07273">
+            <rdf:Description rdf:about="#R_MAR07273">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/M4MPDOL_Lter"/>
@@ -359035,13 +358958,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01866c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01866c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01866r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01866r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07649" sboTerm="SBO:0000185" id="MAR07649" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07649" sboTerm="SBO:0000185" id="R_MAR07649" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -359049,7 +358972,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07649">
+            <rdf:Description rdf:about="#R_MAR07649">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ESTRADIOLGLCtr"/>
@@ -359061,10 +358984,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01786c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01786c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01786r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01786r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -359077,7 +359000,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07766" sboTerm="SBO:0000185" id="MAR07766" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07766" sboTerm="SBO:0000185" id="R_MAR07766" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -359085,7 +359008,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07766">
+            <rdf:Description rdf:about="#R_MAR07766">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/AMETtn"/>
@@ -359097,13 +359020,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02877c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02877c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02877r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02877r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07768" sboTerm="SBO:0000185" id="MAR07768" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07768" sboTerm="SBO:0000185" id="R_MAR07768" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -359111,7 +359034,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07768">
+            <rdf:Description rdf:about="#R_MAR07768">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/AHCYStr"/>
@@ -359123,13 +359046,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02871c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02871c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02871r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02871r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07772" sboTerm="SBO:0000185" id="MAR07772" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07772" sboTerm="SBO:0000185" id="R_MAR07772" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -359137,7 +359060,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07772">
+            <rdf:Description rdf:about="#R_MAR07772">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/NADtru"/>
@@ -359149,13 +359072,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02552r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02552c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07776" sboTerm="SBO:0000185" id="MAR07776" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07776" sboTerm="SBO:0000185" id="R_MAR07776" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -359163,7 +359086,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07776">
+            <rdf:Description rdf:about="#R_MAR07776">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/NADHtru"/>
@@ -359175,13 +359098,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02553c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02553r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07778" sboTerm="SBO:0000185" id="MAR07778" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07778" sboTerm="SBO:0000185" id="R_MAR07778" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -359189,7 +359112,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07778">
+            <rdf:Description rdf:about="#R_MAR07778">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/NADPtru"/>
@@ -359201,13 +359124,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02554r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07780" sboTerm="SBO:0000185" id="MAR07780" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07780" sboTerm="SBO:0000185" id="R_MAR07780" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -359215,7 +359138,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07780">
+            <rdf:Description rdf:about="#R_MAR07780">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/NADPHtru"/>
@@ -359227,13 +359150,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02555r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07784" sboTerm="SBO:0000185" id="MAR07784" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07784" sboTerm="SBO:0000185" id="R_MAR07784" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -359241,7 +359164,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07784">
+            <rdf:Description rdf:about="#R_MAR07784">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/AMPtr"/>
@@ -359253,13 +359176,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01334c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01334r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07789" sboTerm="SBO:0000185" id="MAR07789" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07789" sboTerm="SBO:0000185" id="R_MAR07789" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -359267,7 +359190,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07789">
+            <rdf:Description rdf:about="#R_MAR07789">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FADH2tru"/>
@@ -359279,13 +359202,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01803c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01803c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01803r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01803r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07791" sboTerm="SBO:0000185" id="MAR07791" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07791" sboTerm="SBO:0000185" id="R_MAR07791" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -359293,7 +359216,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07791">
+            <rdf:Description rdf:about="#R_MAR07791">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FADtru"/>
@@ -359305,13 +359228,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01802r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01802r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01802c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01802c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07929" sboTerm="SBO:0000185" id="MAR07929" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07929" sboTerm="SBO:0000185" id="R_MAR07929" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -359319,7 +359242,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07929">
+            <rdf:Description rdf:about="#R_MAR07929">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/11DOCRTSLtr"/>
@@ -359331,13 +359254,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00295c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00295c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00295r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00295r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07933" sboTerm="SBO:0000185" id="MAR07933" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07933" sboTerm="SBO:0000185" id="R_MAR07933" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -359345,7 +359268,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07933">
+            <rdf:Description rdf:about="#R_MAR07933">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/11DOCRTSTRNtr"/>
@@ -359357,13 +359280,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00294c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00294c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00294r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00294r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07944" sboTerm="SBO:0000185" id="MAR07944" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07944" sboTerm="SBO:0000185" id="R_MAR07944" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -359371,7 +359294,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07944">
+            <rdf:Description rdf:about="#R_MAR07944">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_7944"/>
@@ -359381,13 +359304,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01789c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01789c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01789r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01789r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07947" sboTerm="SBO:0000185" id="MAR07947" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07947" sboTerm="SBO:0000185" id="R_MAR07947" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -359395,7 +359318,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07947">
+            <rdf:Description rdf:about="#R_MAR07947">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_7947"/>
@@ -359405,13 +359328,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02762c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02762c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02762r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02762r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07949" sboTerm="SBO:0000185" id="MAR07949" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07949" sboTerm="SBO:0000185" id="R_MAR07949" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -359419,7 +359342,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07949">
+            <rdf:Description rdf:about="#R_MAR07949">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_7949"/>
@@ -359429,13 +359352,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01512c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01512c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01512r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01512r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07953" sboTerm="SBO:0000185" id="MAR07953" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07953" sboTerm="SBO:0000185" id="R_MAR07953" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -359443,7 +359366,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07953">
+            <rdf:Description rdf:about="#R_MAR07953">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/DHFtm"/>
@@ -359455,13 +359378,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01660c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01660c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01660r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01660r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07956" sboTerm="SBO:0000185" id="MAR07956" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07956" sboTerm="SBO:0000185" id="R_MAR07956" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -359469,7 +359392,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07956">
+            <rdf:Description rdf:about="#R_MAR07956">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/TSTSTERONEtr"/>
@@ -359481,13 +359404,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02969c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02969c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02969r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02969r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07960" sboTerm="SBO:0000185" id="MAR07960" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07960" sboTerm="SBO:0000185" id="R_MAR07960" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -359495,7 +359418,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07960">
+            <rdf:Description rdf:about="#R_MAR07960">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/6HTSTSTERONEtr"/>
@@ -359507,13 +359430,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01158c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01158c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01158r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01158r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07963" sboTerm="SBO:0000185" id="MAR07963" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07963" sboTerm="SBO:0000185" id="R_MAR07963" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -359521,7 +359444,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07963">
+            <rdf:Description rdf:about="#R_MAR07963">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ESTRONESt2"/>
@@ -359533,13 +359456,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01795c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01795c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01795r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01795r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07966" sboTerm="SBO:0000185" id="MAR07966" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07966" sboTerm="SBO:0000185" id="R_MAR07966" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -359547,7 +359470,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07966">
+            <rdf:Description rdf:about="#R_MAR07966">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ANDRSTRNGLCtr"/>
@@ -359559,13 +359482,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01339c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01339c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01339r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01339r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07969" sboTerm="SBO:0000185" id="MAR07969" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07969" sboTerm="SBO:0000185" id="R_MAR07969" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -359573,7 +359496,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07969">
+            <rdf:Description rdf:about="#R_MAR07969">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ESTRIOLGLCtr"/>
@@ -359585,13 +359508,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01787c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01787c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01787r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01787r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07981" sboTerm="SBO:0000185" id="MAR07981" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07981" sboTerm="SBO:0000185" id="R_MAR07981" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -359599,7 +359522,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07981">
+            <rdf:Description rdf:about="#R_MAR07981">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/AHANDROSTANGLCtr"/>
@@ -359611,13 +359534,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01799c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01799c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01799r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01799r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07983" sboTerm="SBO:0000185" id="MAR07983" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07983" sboTerm="SBO:0000185" id="R_MAR07983" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -359625,7 +359548,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07983">
+            <rdf:Description rdf:about="#R_MAR07983">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ESTRONEGLCtr"/>
@@ -359637,13 +359560,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01788c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01788c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01788r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01788r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07985" sboTerm="SBO:0000185" id="MAR07985" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07985" sboTerm="SBO:0000185" id="R_MAR07985" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -359651,7 +359574,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07985">
+            <rdf:Description rdf:about="#R_MAR07985">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ESTRONEGLCt"/>
@@ -359663,13 +359586,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00402c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00402c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00402r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00402r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07988" sboTerm="SBO:0000185" id="MAR07988" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07988" sboTerm="SBO:0000185" id="R_MAR07988" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -359677,7 +359600,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07988">
+            <rdf:Description rdf:about="#R_MAR07988">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/5ADTSTSTERONEtr"/>
@@ -359689,13 +359612,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01069c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01069c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01069r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01069r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07989" sboTerm="SBO:0000185" id="MAR07989" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07989" sboTerm="SBO:0000185" id="R_MAR07989" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -359703,7 +359626,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07989">
+            <rdf:Description rdf:about="#R_MAR07989">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/5ADTSTSTERONEGLCtr"/>
@@ -359715,13 +359638,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01070c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01070c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01070r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01070r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08030" sboTerm="SBO:0000185" id="MAR08030" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08030" sboTerm="SBO:0000185" id="R_MAR08030" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -359729,7 +359652,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08030">
+            <rdf:Description rdf:about="#R_MAR08030">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/TMLYSter"/>
@@ -359741,13 +359664,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02517r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02517r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02517c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02517c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08058" sboTerm="SBO:0000185" id="MAR08058" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08058" sboTerm="SBO:0000185" id="R_MAR08058" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -359755,7 +359678,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08058">
+            <rdf:Description rdf:about="#R_MAR08058">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EBP2r"/>
@@ -359767,13 +359690,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01765c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01765c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01765r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01765r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08060" sboTerm="SBO:0000185" id="MAR08060" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08060" sboTerm="SBO:0000185" id="R_MAR08060" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -359781,7 +359704,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08060">
+            <rdf:Description rdf:about="#R_MAR08060">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EBASTINEtr"/>
@@ -359793,13 +359716,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02150c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02150c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02150r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02150r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08234" sboTerm="SBO:0000185" id="MAR08234" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08234" sboTerm="SBO:0000185" id="R_MAR08234" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -359807,7 +359730,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08234">
+            <rdf:Description rdf:about="#R_MAR08234">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/SPHS1Ptr"/>
@@ -359819,13 +359742,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02930c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02930c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02930r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02930r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08236" sboTerm="SBO:0000185" id="MAR08236" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08236" sboTerm="SBO:0000185" id="R_MAR08236" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -359833,7 +359756,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08236">
+            <rdf:Description rdf:about="#R_MAR08236">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/SPHINGStr"/>
@@ -359845,13 +359768,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02929c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02929c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02929r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02929r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08239" sboTerm="SBO:0000185" id="MAR08239" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08239" sboTerm="SBO:0000185" id="R_MAR08239" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -359859,7 +359782,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08239">
+            <rdf:Description rdf:about="#R_MAR08239">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/SPH1Pter"/>
@@ -359871,13 +359794,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02928c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02928c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02928r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02928r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08347" sboTerm="SBO:0000185" id="MAR08347" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08347" sboTerm="SBO:0000185" id="R_MAR08347" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -359885,7 +359808,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08347">
+            <rdf:Description rdf:about="#R_MAR08347">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GULLACter"/>
@@ -359897,13 +359820,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02379c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02379c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02379r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02379r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08350" sboTerm="SBO:0000185" id="MAR08350" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08350" sboTerm="SBO:0000185" id="R_MAR08350" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -359911,7 +359834,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08350">
+            <rdf:Description rdf:about="#R_MAR08350">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GLACter"/>
@@ -359923,13 +359846,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01685c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01685c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01685r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01685r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08351" sboTerm="SBO:0000185" id="MAR08351" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08351" sboTerm="SBO:0000185" id="R_MAR08351" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -359937,7 +359860,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08351">
+            <rdf:Description rdf:about="#R_MAR08351">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GULNter"/>
@@ -359949,13 +359872,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02378r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02378r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02378c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02378c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08358" sboTerm="SBO:0000185" id="MAR08358" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08358" sboTerm="SBO:0000185" id="R_MAR08358" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -359963,7 +359886,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08358">
+            <rdf:Description rdf:about="#R_MAR08358">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ACALDtr"/>
@@ -359975,13 +359898,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01249c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01249c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01249r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01249r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08369" sboTerm="SBO:0000185" id="MAR08369" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08369" sboTerm="SBO:0000185" id="R_MAR08369" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -359989,7 +359912,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08369">
+            <rdf:Description rdf:about="#R_MAR08369">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/UGALNACter"/>
@@ -360001,18 +359924,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03110c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03114r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03110c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03114r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03110r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03114c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03110r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03114c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="frc"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08382" sboTerm="SBO:0000185" id="MAR08382" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08382" sboTerm="SBO:0000185" id="R_MAR08382" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -360020,7 +359943,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08382">
+            <rdf:Description rdf:about="#R_MAR08382">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GAL3ST12"/>
@@ -360032,13 +359955,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01964c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01964c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01964r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01964r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08526" sboTerm="SBO:0000185" id="MAR08526" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08526" sboTerm="SBO:0000185" id="R_MAR08526" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -360046,7 +359969,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08526">
+            <rdf:Description rdf:about="#R_MAR08526">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CHOLtu"/>
@@ -360060,13 +359983,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01513c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01513c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01513r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01513r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08553" sboTerm="SBO:0000185" id="MAR08553" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08553" sboTerm="SBO:0000185" id="R_MAR08553" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -360074,7 +359997,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08553">
+            <rdf:Description rdf:about="#R_MAR08553">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/LEUKTRD4tr"/>
@@ -360086,13 +360009,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02418c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02418c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02418r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02418r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08594" sboTerm="SBO:0000185" id="MAR08594" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08594" sboTerm="SBO:0000185" id="R_MAR08594" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -360100,7 +360023,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08594">
+            <rdf:Description rdf:about="#R_MAR08594">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ANDRSTRNtr"/>
@@ -360112,13 +360035,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01338c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01338c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01338r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01338r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08651" sboTerm="SBO:0000185" id="MAR08651" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08651" sboTerm="SBO:0000185" id="R_MAR08651" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -360126,7 +360049,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08651">
+            <rdf:Description rdf:about="#R_MAR08651">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CBR1"/>
@@ -360138,17 +360061,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01420c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01420c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01420r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01420r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08681" sboTerm="SBO:0000185" id="MAR08681" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08681" sboTerm="SBO:0000185" id="R_MAR08681" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -360156,7 +360079,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08681">
+            <rdf:Description rdf:about="#R_MAR08681">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CRVNCtr"/>
@@ -360168,13 +360091,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01614c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01614c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01614r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01614r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08715" sboTerm="SBO:0000185" id="MAR08715" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08715" sboTerm="SBO:0000185" id="R_MAR08715" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -360182,7 +360105,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08715">
+            <rdf:Description rdf:about="#R_MAR08715">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/RETNGLCtr"/>
@@ -360194,13 +360117,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02836r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02836r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02836c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02836c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08716" sboTerm="SBO:0000185" id="MAR08716" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08716" sboTerm="SBO:0000185" id="R_MAR08716" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -360208,7 +360131,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08716">
+            <rdf:Description rdf:about="#R_MAR08716">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/RETNtr2"/>
@@ -360220,13 +360143,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00350c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00350c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00350r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00350r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08719" sboTerm="SBO:0000185" id="MAR08719" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08719" sboTerm="SBO:0000185" id="R_MAR08719" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -360234,7 +360157,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08719">
+            <rdf:Description rdf:about="#R_MAR08719">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/RETNGLCt2r"/>
@@ -360246,13 +360169,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00353r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00353r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00353c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00353c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08722" sboTerm="SBO:0000185" id="MAR08722" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08722" sboTerm="SBO:0000185" id="R_MAR08722" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -360260,7 +360183,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08722">
+            <rdf:Description rdf:about="#R_MAR08722">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/RETNtr"/>
@@ -360272,13 +360195,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02833c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02833c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02833r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02833r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08737" sboTerm="SBO:0000185" id="MAR08737" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08737" sboTerm="SBO:0000185" id="R_MAR08737" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -360286,7 +360209,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08737">
+            <rdf:Description rdf:about="#R_MAR08737">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/SPHGNtr"/>
@@ -360298,13 +360221,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02927c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02927c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02927r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02927r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08851" sboTerm="SBO:0000185" id="MAR08851" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08851" sboTerm="SBO:0000185" id="R_MAR08851" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -360312,7 +360235,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08851">
+            <rdf:Description rdf:about="#R_MAR08851">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/TSTSTERONEGLCtr"/>
@@ -360324,13 +360247,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02967c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02967c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02967r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02967r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08855" sboTerm="SBO:0000185" id="MAR08855" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08855" sboTerm="SBO:0000185" id="R_MAR08855" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -360338,7 +360261,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08855">
+            <rdf:Description rdf:about="#R_MAR08855">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/TXA2tr"/>
@@ -360350,13 +360273,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02994c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02994c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02994r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02994r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08859" sboTerm="SBO:0000185" id="MAR08859" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08859" sboTerm="SBO:0000185" id="R_MAR08859" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -360364,7 +360287,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08859">
+            <rdf:Description rdf:about="#R_MAR08859">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/UMPtr"/>
@@ -360378,13 +360301,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03114c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03114c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03114r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03114r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08886" sboTerm="SBO:0000185" id="MAR08886" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08886" sboTerm="SBO:0000185" id="R_MAR08886" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -360392,7 +360315,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08886">
+            <rdf:Description rdf:about="#R_MAR08886">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GLCURter"/>
@@ -360404,13 +360327,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01973c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01973c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01973r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01973r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08888" sboTerm="SBO:0000185" id="MAR08888" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08888" sboTerm="SBO:0000185" id="R_MAR08888" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -360418,7 +360341,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08888">
+            <rdf:Description rdf:about="#R_MAR08888">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GLUtr"/>
@@ -360430,13 +360353,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01974c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01974c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01974r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01974r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08906" sboTerm="SBO:0000185" id="MAR08906" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08906" sboTerm="SBO:0000185" id="R_MAR08906" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -360444,7 +360367,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08906">
+            <rdf:Description rdf:about="#R_MAR08906">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/HESTRATRIOLtr"/>
@@ -360456,13 +360379,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00986c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00986c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00986r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00986r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08914" sboTerm="SBO:0000185" id="MAR08914" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08914" sboTerm="SBO:0000185" id="R_MAR08914" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -360470,7 +360393,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08914">
+            <rdf:Description rdf:about="#R_MAR08914">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/LEUKTRA4tr"/>
@@ -360482,13 +360405,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02362c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02362c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02362r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02362r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08915" sboTerm="SBO:0000185" id="MAR08915" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08915" sboTerm="SBO:0000185" id="R_MAR08915" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -360496,7 +360419,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08915">
+            <rdf:Description rdf:about="#R_MAR08915">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/LEUKTRB4tr"/>
@@ -360508,13 +360431,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02364c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02364c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02364r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02364r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08919" sboTerm="SBO:0000185" id="MAR08919" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08919" sboTerm="SBO:0000185" id="R_MAR08919" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -360522,7 +360445,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08919">
+            <rdf:Description rdf:about="#R_MAR08919">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/MANter"/>
@@ -360534,13 +360457,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02453r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02453r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02453c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02453c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08921" sboTerm="SBO:0000185" id="MAR08921" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08921" sboTerm="SBO:0000185" id="R_MAR08921" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -360548,7 +360471,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08921">
+            <rdf:Description rdf:about="#R_MAR08921">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/MEOHtr"/>
@@ -360562,13 +360485,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02470c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02470c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02470r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02470r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09177" sboTerm="SBO:0000185" id="MAR09177" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09177" sboTerm="SBO:0000185" id="R_MAR09177" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -360576,7 +360499,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09177">
+            <rdf:Description rdf:about="#R_MAR09177">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_9177"/>
@@ -360586,13 +360509,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01800c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01800c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01800r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01800r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09200" sboTerm="SBO:0000185" id="MAR09200" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09200" sboTerm="SBO:0000185" id="R_MAR09200" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -360600,7 +360523,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09200">
+            <rdf:Description rdf:about="#R_MAR09200">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_9200"/>
@@ -360610,16 +360533,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03157c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03157c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03157r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03157r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Catsup"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR09625" sboTerm="SBO:0000185" id="MAR09625" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09625" sboTerm="SBO:0000185" id="R_MAR09625" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -360627,7 +360550,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09625">
+            <rdf:Description rdf:about="#R_MAR09625">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_9625"/>
@@ -360637,13 +360560,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00236r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00236r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00236c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00236c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09626" sboTerm="SBO:0000185" id="MAR09626" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09626" sboTerm="SBO:0000185" id="R_MAR09626" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -360651,7 +360574,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09626">
+            <rdf:Description rdf:about="#R_MAR09626">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_9626"/>
@@ -360663,13 +360586,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02946r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02946r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02946c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02946c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09627" sboTerm="SBO:0000185" id="MAR09627" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09627" sboTerm="SBO:0000185" id="R_MAR09627" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -360677,7 +360600,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09627">
+            <rdf:Description rdf:about="#R_MAR09627">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_9627"/>
@@ -360687,13 +360610,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02328r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02328r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02328c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02328c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09628" sboTerm="SBO:0000185" id="MAR09628" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09628" sboTerm="SBO:0000185" id="R_MAR09628" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -360701,7 +360624,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09628">
+            <rdf:Description rdf:about="#R_MAR09628">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_9628"/>
@@ -360711,13 +360634,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02027r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02027r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02027c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02027c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09629" sboTerm="SBO:0000185" id="MAR09629" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09629" sboTerm="SBO:0000185" id="R_MAR09629" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -360725,7 +360648,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09629">
+            <rdf:Description rdf:about="#R_MAR09629">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_9629"/>
@@ -360735,13 +360658,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02022r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02022r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02022c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02022c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09630" sboTerm="SBO:0000185" id="MAR09630" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09630" sboTerm="SBO:0000185" id="R_MAR09630" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -360749,7 +360672,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09630">
+            <rdf:Description rdf:about="#R_MAR09630">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_9630"/>
@@ -360759,13 +360682,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02434r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02434r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02434c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02434c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09631" sboTerm="SBO:0000185" id="MAR09631" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09631" sboTerm="SBO:0000185" id="R_MAR09631" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -360773,7 +360696,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09631">
+            <rdf:Description rdf:about="#R_MAR09631">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_9631"/>
@@ -360783,13 +360706,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02462r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02462r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02462c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02462c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09632" sboTerm="SBO:0000185" id="MAR09632" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09632" sboTerm="SBO:0000185" id="R_MAR09632" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -360797,7 +360720,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09632">
+            <rdf:Description rdf:about="#R_MAR09632">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_9632"/>
@@ -360807,13 +360730,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01665r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01665r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01665c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01665c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09633" sboTerm="SBO:0000185" id="MAR09633" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09633" sboTerm="SBO:0000185" id="R_MAR09633" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -360821,7 +360744,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09633">
+            <rdf:Description rdf:about="#R_MAR09633">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_9633"/>
@@ -360831,13 +360754,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01687r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01687r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01687c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01687c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09634" sboTerm="SBO:0000185" id="MAR09634" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09634" sboTerm="SBO:0000185" id="R_MAR09634" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -360845,7 +360768,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09634">
+            <rdf:Description rdf:about="#R_MAR09634">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_9634"/>
@@ -360855,13 +360778,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01798r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01798r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01798c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01798c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09716" sboTerm="SBO:0000185" id="MAR09716" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09716" sboTerm="SBO:0000185" id="R_MAR09716" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -360869,7 +360792,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09716">
+            <rdf:Description rdf:about="#R_MAR09716">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_9716"/>
@@ -360879,13 +360802,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01667r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01667r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01667c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01667c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09724" sboTerm="SBO:0000185" id="MAR09724" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09724" sboTerm="SBO:0000185" id="R_MAR09724" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -360893,7 +360816,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09724">
+            <rdf:Description rdf:about="#R_MAR09724">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_9724"/>
@@ -360903,13 +360826,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02728r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02728r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02728c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02728c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09732" sboTerm="SBO:0000185" id="MAR09732" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09732" sboTerm="SBO:0000185" id="R_MAR09732" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -360917,7 +360840,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09732">
+            <rdf:Description rdf:about="#R_MAR09732">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_9732"/>
@@ -360927,13 +360850,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02001r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02001r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02001c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02001c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07108" sboTerm="SBO:0000627" id="MAR07108" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07108" sboTerm="SBO:0000627" id="R_MAR07108" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -360941,7 +360864,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07108">
+            <rdf:Description rdf:about="#R_MAR07108">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/EX_C07535[e]"/>
@@ -360951,10 +360874,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01374e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01374e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR07110" sboTerm="SBO:0000627" id="MAR07110" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07110" sboTerm="SBO:0000627" id="R_MAR07110" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -360962,7 +360885,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07110">
+            <rdf:Description rdf:about="#R_MAR07110">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/EX_npthl[e]"/>
@@ -360972,10 +360895,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02556e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02556e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR07112" sboTerm="SBO:0000627" id="MAR07112" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07112" sboTerm="SBO:0000627" id="R_MAR07112" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -360983,7 +360906,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07112">
+            <rdf:Description rdf:about="#R_MAR07112">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/EX_aflatoxin[e]"/>
@@ -360993,10 +360916,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01296e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01296e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR07114" sboTerm="SBO:0000627" id="MAR07114" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07114" sboTerm="SBO:0000627" id="R_MAR07114" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -361004,7 +360927,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07114">
+            <rdf:Description rdf:about="#R_MAR07114">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/EX_M03044[e]"/>
@@ -361014,10 +360937,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03044e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03044e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR07116" sboTerm="SBO:0000627" id="MAR07116" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07116" sboTerm="SBO:0000627" id="R_MAR07116" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -361025,7 +360948,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07116">
+            <rdf:Description rdf:about="#R_MAR07116">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/EX_M01403[e]"/>
@@ -361035,10 +360958,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01403e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01403e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR07118" sboTerm="SBO:0000627" id="MAR07118" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07118" sboTerm="SBO:0000627" id="R_MAR07118" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -361046,7 +360969,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07118">
+            <rdf:Description rdf:about="#R_MAR07118">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/EX_CN0020[e]"/>
@@ -361056,10 +360979,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01174e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01174e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR07120" sboTerm="SBO:0000627" id="MAR07120" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07120" sboTerm="SBO:0000627" id="R_MAR07120" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -361067,7 +360990,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07120">
+            <rdf:Description rdf:about="#R_MAR07120">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/EX_M00932[e]"/>
@@ -361077,10 +361000,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00932e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00932e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR07122" sboTerm="SBO:0000627" id="MAR07122" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07122" sboTerm="SBO:0000627" id="R_MAR07122" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -361088,7 +361011,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07122">
+            <rdf:Description rdf:about="#R_MAR07122">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/EX_M00545[e]"/>
@@ -361098,10 +361021,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00545e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00545e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR07124" sboTerm="SBO:0000627" id="MAR07124" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07124" sboTerm="SBO:0000627" id="R_MAR07124" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -361109,7 +361032,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07124">
+            <rdf:Description rdf:about="#R_MAR07124">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/EX_M00228[e]"/>
@@ -361119,10 +361042,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00228e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00228e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR07126" sboTerm="SBO:0000627" id="MAR07126" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07126" sboTerm="SBO:0000627" id="R_MAR07126" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -361130,7 +361053,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07126">
+            <rdf:Description rdf:about="#R_MAR07126">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/EX_M00242[e]"/>
@@ -361140,10 +361063,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00242e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00242e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09023" sboTerm="SBO:0000627" id="MAR09023" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09023" sboTerm="SBO:0000627" id="R_MAR09023" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -361151,7 +361074,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09023">
+            <rdf:Description rdf:about="#R_MAR09023">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/EX_M02957[e]"/>
@@ -361161,10 +361084,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02957e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02957e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09024" sboTerm="SBO:0000627" id="MAR09024" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09024" sboTerm="SBO:0000627" id="R_MAR09024" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -361172,7 +361095,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09024">
+            <rdf:Description rdf:about="#R_MAR09024">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/EX_M01570[e]"/>
@@ -361182,10 +361105,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01570e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01570e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09032" sboTerm="SBO:0000627" id="MAR09032" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09032" sboTerm="SBO:0000627" id="R_MAR09032" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -361193,7 +361116,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09032">
+            <rdf:Description rdf:about="#R_MAR09032">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/EX_M02909[e]"/>
@@ -361203,10 +361126,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02909e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02909e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09808" sboTerm="SBO:0000627" id="MAR09808" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09808" sboTerm="SBO:0000627" id="R_MAR09808" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -361214,7 +361137,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09808">
+            <rdf:Description rdf:about="#R_MAR09808">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/EX_ppa[e]"/>
@@ -361224,10 +361147,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02772e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02772e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09809" sboTerm="SBO:0000627" id="MAR09809" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09809" sboTerm="SBO:0000627" id="R_MAR09809" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -361235,7 +361158,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09809">
+            <rdf:Description rdf:about="#R_MAR09809">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/EX_but[e]"/>
@@ -361245,10 +361168,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01410e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01410e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09810" sboTerm="SBO:0000627" id="MAR09810" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09810" sboTerm="SBO:0000627" id="R_MAR09810" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -361256,7 +361179,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09810">
+            <rdf:Description rdf:about="#R_MAR09810">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/EX_M03134[e]"/>
@@ -361266,10 +361189,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03134e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03134e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09811" sboTerm="SBO:0000627" id="MAR09811" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09811" sboTerm="SBO:0000627" id="R_MAR09811" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -361277,7 +361200,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09811">
+            <rdf:Description rdf:about="#R_MAR09811">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/EX_caproic[e]"/>
@@ -361287,10 +361210,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02120e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02120e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09812" sboTerm="SBO:0000627" id="MAR09812" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09812" sboTerm="SBO:0000627" id="R_MAR09812" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -361298,7 +361221,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09812">
+            <rdf:Description rdf:about="#R_MAR09812">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/EX_M02108[e]"/>
@@ -361308,10 +361231,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02108e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02108e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09813" sboTerm="SBO:0000627" id="MAR09813" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09813" sboTerm="SBO:0000627" id="R_MAR09813" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -361319,7 +361242,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09813">
+            <rdf:Description rdf:about="#R_MAR09813">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/EX_octa[e]"/>
@@ -361329,10 +361252,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02642e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02642e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09814" sboTerm="SBO:0000627" id="MAR09814" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09814" sboTerm="SBO:0000627" id="R_MAR09814" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -361340,7 +361263,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09814">
+            <rdf:Description rdf:about="#R_MAR09814">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/EX_C01601[e]"/>
@@ -361350,10 +361273,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02614e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02614e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09815" sboTerm="SBO:0000627" id="MAR09815" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09815" sboTerm="SBO:0000627" id="R_MAR09815" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -361361,7 +361284,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09815">
+            <rdf:Description rdf:about="#R_MAR09815">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/EX_dca[e]"/>
@@ -361371,10 +361294,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01648e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01648e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09816" sboTerm="SBO:0000627" id="MAR09816" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09816" sboTerm="SBO:0000627" id="R_MAR09816" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -361382,7 +361305,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09816">
+            <rdf:Description rdf:about="#R_MAR09816">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/EX_M03117[e]"/>
@@ -361392,10 +361315,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03117e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03117e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09033" sboTerm="SBO:0000627" id="MAR09033" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09033" sboTerm="SBO:0000627" id="R_MAR09033" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -361403,7 +361326,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09033">
+            <rdf:Description rdf:about="#R_MAR09033">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/EX_M02560[e]"/>
@@ -361413,10 +361336,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02560e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02560e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09034" sboTerm="SBO:0000627" id="MAR09034" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09034" sboTerm="SBO:0000627" id="R_MAR09034" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -361424,7 +361347,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09034">
+            <rdf:Description rdf:about="#R_MAR09034">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_glc__D_e"/>
@@ -361435,10 +361358,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01965e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01965e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09035" sboTerm="SBO:0000627" id="MAR09035" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09035" sboTerm="SBO:0000627" id="R_MAR09035" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -361446,7 +361369,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09035">
+            <rdf:Description rdf:about="#R_MAR09035">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_lnlc_e"/>
@@ -361457,10 +361380,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02387e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02387e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09036" sboTerm="SBO:0000627" id="MAR09036" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09036" sboTerm="SBO:0000627" id="R_MAR09036" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -361468,7 +361391,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09036">
+            <rdf:Description rdf:about="#R_MAR09036">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_lnlnca_e"/>
@@ -361479,10 +361402,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02389e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02389e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09037" sboTerm="SBO:0000627" id="MAR09037" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09037" sboTerm="SBO:0000627" id="R_MAR09037" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -361490,7 +361413,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#meta_MAR09037">
+            <rdf:Description rdf:about="#meta_R_MAR09037">
               <bqbiol:is>
                 <rdf:Bag/>
               </bqbiol:is>
@@ -361498,10 +361421,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02746e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02746e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09038" sboTerm="SBO:0000627" id="MAR09038" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09038" sboTerm="SBO:0000627" id="R_MAR09038" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -361509,7 +361432,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09038">
+            <rdf:Description rdf:about="#R_MAR09038">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_his__L_e"/>
@@ -361520,10 +361443,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02125e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02125e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09039" sboTerm="SBO:0000627" id="MAR09039" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09039" sboTerm="SBO:0000627" id="R_MAR09039" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -361531,7 +361454,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09039">
+            <rdf:Description rdf:about="#R_MAR09039">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_ile__L_e"/>
@@ -361542,10 +361465,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02184e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02184e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09040" sboTerm="SBO:0000627" id="MAR09040" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09040" sboTerm="SBO:0000627" id="R_MAR09040" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -361553,7 +361476,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09040">
+            <rdf:Description rdf:about="#R_MAR09040">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_leu__L_e"/>
@@ -361564,10 +361487,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02360e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02360e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09041" sboTerm="SBO:0000627" id="MAR09041" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09041" sboTerm="SBO:0000627" id="R_MAR09041" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -361575,7 +361498,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09041">
+            <rdf:Description rdf:about="#R_MAR09041">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_lys__L_e"/>
@@ -361586,10 +361509,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02426e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02426e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09042" sboTerm="SBO:0000627" id="MAR09042" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09042" sboTerm="SBO:0000627" id="R_MAR09042" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -361597,7 +361520,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09042">
+            <rdf:Description rdf:about="#R_MAR09042">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_met__L_e"/>
@@ -361608,10 +361531,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02471e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02471e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09043" sboTerm="SBO:0000627" id="MAR09043" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09043" sboTerm="SBO:0000627" id="R_MAR09043" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -361619,7 +361542,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09043">
+            <rdf:Description rdf:about="#R_MAR09043">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_phe__L_e"/>
@@ -361630,10 +361553,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02724e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02724e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09044" sboTerm="SBO:0000627" id="MAR09044" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09044" sboTerm="SBO:0000627" id="R_MAR09044" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -361641,7 +361564,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09044">
+            <rdf:Description rdf:about="#R_MAR09044">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_thr__L_e"/>
@@ -361652,10 +361575,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02993e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02993e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09045" sboTerm="SBO:0000627" id="MAR09045" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09045" sboTerm="SBO:0000627" id="R_MAR09045" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -361663,7 +361586,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09045">
+            <rdf:Description rdf:about="#R_MAR09045">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_trp__L_e"/>
@@ -361674,10 +361597,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03089e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03089e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09046" sboTerm="SBO:0000627" id="MAR09046" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09046" sboTerm="SBO:0000627" id="R_MAR09046" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -361685,7 +361608,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09046">
+            <rdf:Description rdf:about="#R_MAR09046">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_val__L_e"/>
@@ -361696,10 +361619,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03135e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03135e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09047" sboTerm="SBO:0000627" id="MAR09047" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09047" sboTerm="SBO:0000627" id="R_MAR09047" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -361707,7 +361630,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09047">
+            <rdf:Description rdf:about="#R_MAR09047">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_h2o_e"/>
@@ -361718,10 +361641,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09048" sboTerm="SBO:0000627" id="MAR09048" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09048" sboTerm="SBO:0000627" id="R_MAR09048" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -361729,7 +361652,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09048">
+            <rdf:Description rdf:about="#R_MAR09048">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_o2_e"/>
@@ -361740,10 +361663,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02630e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09049" sboTerm="SBO:0000627" id="MAR09049" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09049" sboTerm="SBO:0000627" id="R_MAR09049" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -361751,7 +361674,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09049">
+            <rdf:Description rdf:about="#R_MAR09049">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/EX_M03147[e]"/>
@@ -361761,10 +361684,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03147e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03147e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09050" sboTerm="SBO:0000627" id="MAR09050" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09050" sboTerm="SBO:0000627" id="R_MAR09050" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -361772,7 +361695,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09050">
+            <rdf:Description rdf:about="#R_MAR09050">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/EX_M02048[e]"/>
@@ -361782,10 +361705,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02048e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02048e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09051" sboTerm="SBO:0000627" id="MAR09051" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09051" sboTerm="SBO:0000627" id="R_MAR09051" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -361793,7 +361716,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09051">
+            <rdf:Description rdf:about="#R_MAR09051">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/EX_M02353[e]"/>
@@ -361803,10 +361726,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02353e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02353e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09052" sboTerm="SBO:0000627" id="MAR09052" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09052" sboTerm="SBO:0000627" id="R_MAR09052" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -361814,7 +361737,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09052">
+            <rdf:Description rdf:about="#R_MAR09052">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/EX_M01569[e]"/>
@@ -361824,10 +361747,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01569e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01569e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09053" sboTerm="SBO:0000627" id="MAR09053" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09053" sboTerm="SBO:0000627" id="R_MAR09053" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -361835,7 +361758,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09053">
+            <rdf:Description rdf:about="#R_MAR09053">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/EX_M03146[e]"/>
@@ -361845,10 +361768,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03146e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03146e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09054" sboTerm="SBO:0000627" id="MAR09054" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09054" sboTerm="SBO:0000627" id="R_MAR09054" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -361856,7 +361779,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09054">
+            <rdf:Description rdf:about="#R_MAR09054">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/EX_M02047[e]"/>
@@ -361866,10 +361789,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02047e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02047e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09055" sboTerm="SBO:0000627" id="MAR09055" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09055" sboTerm="SBO:0000627" id="R_MAR09055" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -361877,7 +361800,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09055">
+            <rdf:Description rdf:about="#R_MAR09055">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/EX_M02352[e]"/>
@@ -361887,10 +361810,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02352e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02352e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09056" sboTerm="SBO:0000627" id="MAR09056" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09056" sboTerm="SBO:0000627" id="R_MAR09056" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -361898,7 +361821,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09056">
+            <rdf:Description rdf:about="#R_MAR09056">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/EX_M02561[e]"/>
@@ -361908,10 +361831,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02561e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02561e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09058" sboTerm="SBO:0000627" id="MAR09058" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09058" sboTerm="SBO:0000627" id="R_MAR09058" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -361919,7 +361842,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09058">
+            <rdf:Description rdf:about="#R_MAR09058">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_co2_e"/>
@@ -361930,10 +361853,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01596e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01596e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09061" sboTerm="SBO:0000627" id="MAR09061" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09061" sboTerm="SBO:0000627" id="R_MAR09061" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -361941,7 +361864,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09061">
+            <rdf:Description rdf:about="#R_MAR09061">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_ala__L_e"/>
@@ -361952,10 +361875,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01307e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01307e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09062" sboTerm="SBO:0000627" id="MAR09062" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09062" sboTerm="SBO:0000627" id="R_MAR09062" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -361963,7 +361886,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09062">
+            <rdf:Description rdf:about="#R_MAR09062">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_asn__L_e"/>
@@ -361974,10 +361897,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01369e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01369e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09063" sboTerm="SBO:0000627" id="MAR09063" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09063" sboTerm="SBO:0000627" id="R_MAR09063" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -361985,7 +361908,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09063">
+            <rdf:Description rdf:about="#R_MAR09063">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_gln__L_e"/>
@@ -361996,10 +361919,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01975e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01975e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09064" sboTerm="SBO:0000627" id="MAR09064" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09064" sboTerm="SBO:0000627" id="R_MAR09064" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -362007,7 +361930,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09064">
+            <rdf:Description rdf:about="#R_MAR09064">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_tyr__L_e"/>
@@ -362018,10 +361941,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03101e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03101e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09065" sboTerm="SBO:0000627" id="MAR09065" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09065" sboTerm="SBO:0000627" id="R_MAR09065" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -362029,7 +361952,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09065">
+            <rdf:Description rdf:about="#R_MAR09065">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_cys__L_e"/>
@@ -362040,10 +361963,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01628e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01628e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09066" sboTerm="SBO:0000627" id="MAR09066" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09066" sboTerm="SBO:0000627" id="R_MAR09066" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -362051,7 +361974,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09066">
+            <rdf:Description rdf:about="#R_MAR09066">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_arg__L_e"/>
@@ -362062,10 +361985,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01365e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01365e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09067" sboTerm="SBO:0000627" id="MAR09067" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09067" sboTerm="SBO:0000627" id="R_MAR09067" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -362073,7 +361996,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09067">
+            <rdf:Description rdf:about="#R_MAR09067">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_gly_e"/>
@@ -362084,10 +362007,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01986e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09068" sboTerm="SBO:0000627" id="MAR09068" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09068" sboTerm="SBO:0000627" id="R_MAR09068" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -362095,7 +362018,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09068">
+            <rdf:Description rdf:about="#R_MAR09068">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_pro__L_e"/>
@@ -362106,10 +362029,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02770e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02770e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09069" sboTerm="SBO:0000627" id="MAR09069" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09069" sboTerm="SBO:0000627" id="R_MAR09069" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -362117,7 +362040,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09069">
+            <rdf:Description rdf:about="#R_MAR09069">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_ser__L_e"/>
@@ -362128,10 +362051,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02896e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02896e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09070" sboTerm="SBO:0000627" id="MAR09070" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09070" sboTerm="SBO:0000627" id="R_MAR09070" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -362139,7 +362062,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09070">
+            <rdf:Description rdf:about="#R_MAR09070">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_asp__L_e"/>
@@ -362150,10 +362073,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01370e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01370e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09071" sboTerm="SBO:0000627" id="MAR09071" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09071" sboTerm="SBO:0000627" id="R_MAR09071" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -362161,7 +362084,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09071">
+            <rdf:Description rdf:about="#R_MAR09071">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_glu__L_e"/>
@@ -362172,10 +362095,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01974e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01974e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09072" sboTerm="SBO:0000627" id="MAR09072" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09072" sboTerm="SBO:0000627" id="R_MAR09072" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -362183,7 +362106,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09072">
+            <rdf:Description rdf:about="#R_MAR09072">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_pi_e"/>
@@ -362194,10 +362117,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02751e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09073" sboTerm="SBO:0000627" id="MAR09073" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09073" sboTerm="SBO:0000627" id="R_MAR09073" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -362205,7 +362128,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09073">
+            <rdf:Description rdf:about="#R_MAR09073">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_nh4_e"/>
@@ -362215,10 +362138,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02578e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02578e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09074" sboTerm="SBO:0000627" id="MAR09074" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09074" sboTerm="SBO:0000627" id="R_MAR09074" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -362226,7 +362149,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09074">
+            <rdf:Description rdf:about="#R_MAR09074">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_sph1p_e"/>
@@ -362237,10 +362160,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02946e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02946e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09075" sboTerm="SBO:0000627" id="MAR09075" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09075" sboTerm="SBO:0000627" id="R_MAR09075" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -362248,7 +362171,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09075">
+            <rdf:Description rdf:about="#R_MAR09075">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_uri_e"/>
@@ -362259,10 +362182,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03120e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03120e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09076" sboTerm="SBO:0000627" id="MAR09076" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09076" sboTerm="SBO:0000627" id="R_MAR09076" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -362270,7 +362193,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09076">
+            <rdf:Description rdf:about="#R_MAR09076">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_fe2_e"/>
@@ -362281,10 +362204,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01821e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01821e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09077" sboTerm="SBO:0000627" id="MAR09077" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09077" sboTerm="SBO:0000627" id="R_MAR09077" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -362292,7 +362215,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09077">
+            <rdf:Description rdf:about="#R_MAR09077">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_na1_e"/>
@@ -362303,10 +362226,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09078" sboTerm="SBO:0000627" id="MAR09078" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09078" sboTerm="SBO:0000627" id="R_MAR09078" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -362314,7 +362237,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09078">
+            <rdf:Description rdf:about="#R_MAR09078">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_hco3_e"/>
@@ -362325,10 +362248,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09079" sboTerm="SBO:0000627" id="MAR09079" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09079" sboTerm="SBO:0000627" id="R_MAR09079" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -362336,7 +362259,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09079">
+            <rdf:Description rdf:about="#R_MAR09079">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_h_e"/>
@@ -362347,10 +362270,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09080" sboTerm="SBO:0000627" id="MAR09080" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09080" sboTerm="SBO:0000627" id="R_MAR09080" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -362358,7 +362281,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09080">
+            <rdf:Description rdf:about="#R_MAR09080">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/EX_HC02172[e]"/>
@@ -362368,10 +362291,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03157e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03157e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09081" sboTerm="SBO:0000627" id="MAR09081" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09081" sboTerm="SBO:0000627" id="R_MAR09081" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -362380,7 +362303,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09081">
+            <rdf:Description rdf:about="#R_MAR09081">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_k_e"/>
@@ -362392,10 +362315,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02200e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02200e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09082" sboTerm="SBO:0000627" id="MAR09082" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09082" sboTerm="SBO:0000627" id="R_MAR09082" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -362403,7 +362326,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09082">
+            <rdf:Description rdf:about="#R_MAR09082">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_ca2_e"/>
@@ -362415,10 +362338,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01413e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01413e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09083" sboTerm="SBO:0000627" id="MAR09083" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09083" sboTerm="SBO:0000627" id="R_MAR09083" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -362426,7 +362349,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09083">
+            <rdf:Description rdf:about="#R_MAR09083">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_chol_e"/>
@@ -362437,10 +362360,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01513e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01513e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09084" sboTerm="SBO:0000627" id="MAR09084" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09084" sboTerm="SBO:0000627" id="R_MAR09084" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -362448,7 +362371,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09084">
+            <rdf:Description rdf:about="#R_MAR09084">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/EX_etha[e]"/>
@@ -362458,10 +362381,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01797e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01797e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09085" sboTerm="SBO:0000627" id="MAR09085" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09085" sboTerm="SBO:0000627" id="R_MAR09085" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -362469,7 +362392,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09085">
+            <rdf:Description rdf:about="#R_MAR09085">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_glyc_e"/>
@@ -362480,10 +362403,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01983e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01983e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09086" sboTerm="SBO:0000627" id="MAR09086" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09086" sboTerm="SBO:0000627" id="R_MAR09086" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -362491,7 +362414,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09086">
+            <rdf:Description rdf:about="#R_MAR09086">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_ac_e"/>
@@ -362502,10 +362425,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01252e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01252e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09087" sboTerm="SBO:0000627" id="MAR09087" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09087" sboTerm="SBO:0000627" id="R_MAR09087" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -362513,7 +362436,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09087">
+            <rdf:Description rdf:about="#R_MAR09087">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_orn__L_e"/>
@@ -362524,10 +362447,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02658e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02658e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09088" sboTerm="SBO:0000627" id="MAR09088" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09088" sboTerm="SBO:0000627" id="R_MAR09088" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -362535,7 +362458,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09088">
+            <rdf:Description rdf:about="#R_MAR09088">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_so3_e"/>
@@ -362546,10 +362469,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02949e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02949e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09089" sboTerm="SBO:0000627" id="MAR09089" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09089" sboTerm="SBO:0000627" id="R_MAR09089" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -362557,7 +362480,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09089">
+            <rdf:Description rdf:about="#R_MAR09089">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/EX_apoC_Lys[e]"/>
@@ -362567,10 +362490,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02740e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02740e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09090" sboTerm="SBO:0000627" id="MAR09090" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09090" sboTerm="SBO:0000627" id="R_MAR09090" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -362578,7 +362501,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09090">
+            <rdf:Description rdf:about="#R_MAR09090">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_3mlda_e"/>
@@ -362589,10 +362512,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02477e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02477e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09091" sboTerm="SBO:0000627" id="MAR09091" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09091" sboTerm="SBO:0000627" id="R_MAR09091" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -362600,7 +362523,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09091">
+            <rdf:Description rdf:about="#R_MAR09091">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_4abut_e"/>
@@ -362611,10 +362534,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00970e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00970e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09092" sboTerm="SBO:0000627" id="MAR09092" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09092" sboTerm="SBO:0000627" id="R_MAR09092" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -362622,7 +362545,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09092">
+            <rdf:Description rdf:about="#R_MAR09092">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_dopa_e"/>
@@ -362633,10 +362556,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01736e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01736e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09093" sboTerm="SBO:0000627" id="MAR09093" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09093" sboTerm="SBO:0000627" id="R_MAR09093" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -362644,7 +362567,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09093">
+            <rdf:Description rdf:about="#R_MAR09093">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_nrpphr_e"/>
@@ -362655,10 +362578,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02617e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02617e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09094" sboTerm="SBO:0000627" id="MAR09094" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09094" sboTerm="SBO:0000627" id="R_MAR09094" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -362666,7 +362589,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09094">
+            <rdf:Description rdf:about="#R_MAR09094">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_5htrp_e"/>
@@ -362677,10 +362600,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01107e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01107e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09095" sboTerm="SBO:0000627" id="MAR09095" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09095" sboTerm="SBO:0000627" id="R_MAR09095" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -362688,7 +362611,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09095">
+            <rdf:Description rdf:about="#R_MAR09095">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_adrnl_e"/>
@@ -362699,10 +362622,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01290e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01290e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09096" sboTerm="SBO:0000627" id="MAR09096" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09096" sboTerm="SBO:0000627" id="R_MAR09096" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -362710,7 +362633,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09096">
+            <rdf:Description rdf:about="#R_MAR09096">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_fe3_e"/>
@@ -362722,10 +362645,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01822e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01822e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09097" sboTerm="SBO:0000627" id="MAR09097" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09097" sboTerm="SBO:0000627" id="R_MAR09097" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -362733,7 +362656,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09097">
+            <rdf:Description rdf:about="#R_MAR09097">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_asp__D_e"/>
@@ -362744,10 +362667,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01641e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01641e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09098" sboTerm="SBO:0000627" id="MAR09098" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09098" sboTerm="SBO:0000627" id="R_MAR09098" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -362755,7 +362678,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09098">
+            <rdf:Description rdf:about="#R_MAR09098">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_ala__D_e"/>
@@ -362767,10 +362690,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01638e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01638e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09099" sboTerm="SBO:0000627" id="MAR09099" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09099" sboTerm="SBO:0000627" id="R_MAR09099" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -362778,7 +362701,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09099">
+            <rdf:Description rdf:about="#R_MAR09099">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_etoh_e"/>
@@ -362789,10 +362712,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01796e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01796e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09100" sboTerm="SBO:0000627" id="MAR09100" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09100" sboTerm="SBO:0000627" id="R_MAR09100" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -362800,7 +362723,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09100">
+            <rdf:Description rdf:about="#R_MAR09100">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_5fthf_e"/>
@@ -362811,10 +362734,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01100e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01100e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09101" sboTerm="SBO:0000627" id="MAR09101" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09101" sboTerm="SBO:0000627" id="R_MAR09101" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -362822,7 +362745,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09101">
+            <rdf:Description rdf:about="#R_MAR09101">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_5adtststeroneglc_e"/>
@@ -362833,10 +362756,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02754e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02754e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09102" sboTerm="SBO:0000627" id="MAR09102" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09102" sboTerm="SBO:0000627" id="R_MAR09102" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -362844,7 +362767,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09102">
+            <rdf:Description rdf:about="#R_MAR09102">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_lcts_e"/>
@@ -362856,10 +362779,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02332e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02332e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09103" sboTerm="SBO:0000627" id="MAR09103" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09103" sboTerm="SBO:0000627" id="R_MAR09103" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -362867,7 +362790,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09103">
+            <rdf:Description rdf:about="#R_MAR09103">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/EX_HC00250[e]"/>
@@ -362877,10 +362800,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02042e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02042e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09104" sboTerm="SBO:0000627" id="MAR09104" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09104" sboTerm="SBO:0000627" id="R_MAR09104" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -362888,7 +362811,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09104">
+            <rdf:Description rdf:about="#R_MAR09104">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_1mncam_e"/>
@@ -362899,10 +362822,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00536e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00536e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09105" sboTerm="SBO:0000627" id="MAR09105" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09105" sboTerm="SBO:0000627" id="R_MAR09105" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -362910,7 +362833,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09105">
+            <rdf:Description rdf:about="#R_MAR09105">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_thmmp_e"/>
@@ -362921,10 +362844,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02983e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02983e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09106" sboTerm="SBO:0000627" id="MAR09106" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09106" sboTerm="SBO:0000627" id="R_MAR09106" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -362932,7 +362855,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09106">
+            <rdf:Description rdf:about="#R_MAR09106">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_thmtp_e"/>
@@ -362943,10 +362866,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02985e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02985e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09107" sboTerm="SBO:0000627" id="MAR09107" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09107" sboTerm="SBO:0000627" id="R_MAR09107" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -362954,7 +362877,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09107">
+            <rdf:Description rdf:about="#R_MAR09107">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_pheme_e"/>
@@ -362965,10 +362888,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02049e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02049e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09108" sboTerm="SBO:0000627" id="MAR09108" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09108" sboTerm="SBO:0000627" id="R_MAR09108" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -362976,7 +362899,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09108">
+            <rdf:Description rdf:about="#R_MAR09108">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/EX_HC01361[e]"/>
@@ -362986,10 +362909,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01704e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01704e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09109" sboTerm="SBO:0000627" id="MAR09109" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09109" sboTerm="SBO:0000627" id="R_MAR09109" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -362997,7 +362920,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09109">
+            <rdf:Description rdf:about="#R_MAR09109">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_btn_e"/>
@@ -363009,10 +362932,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01401e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01401e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09110" sboTerm="SBO:0000627" id="MAR09110" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09110" sboTerm="SBO:0000627" id="R_MAR09110" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -363020,7 +362943,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09110">
+            <rdf:Description rdf:about="#R_MAR09110">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_biocyt_e"/>
@@ -363031,10 +362954,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01400e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01400e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09111" sboTerm="SBO:0000627" id="MAR09111" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09111" sboTerm="SBO:0000627" id="R_MAR09111" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -363042,7 +362965,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09111">
+            <rdf:Description rdf:about="#R_MAR09111">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_hspg_e"/>
@@ -363053,10 +362976,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02054e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02054e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09113" sboTerm="SBO:0000627" id="MAR09113" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09113" sboTerm="SBO:0000627" id="R_MAR09113" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -363064,7 +362987,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09113">
+            <rdf:Description rdf:about="#R_MAR09113">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_ksi_e"/>
@@ -363075,10 +362998,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02278e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02278e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09114" sboTerm="SBO:0000627" id="MAR09114" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09114" sboTerm="SBO:0000627" id="R_MAR09114" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -363086,7 +363009,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09114">
+            <rdf:Description rdf:about="#R_MAR09114">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_ksi_deg1_e"/>
@@ -363097,10 +363020,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02237e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02237e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09115" sboTerm="SBO:0000627" id="MAR09115" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09115" sboTerm="SBO:0000627" id="R_MAR09115" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -363108,7 +363031,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09115">
+            <rdf:Description rdf:about="#R_MAR09115">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_ksii_core2_e"/>
@@ -363119,10 +363042,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02288e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02288e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09116" sboTerm="SBO:0000627" id="MAR09116" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09116" sboTerm="SBO:0000627" id="R_MAR09116" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -363130,7 +363053,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09116">
+            <rdf:Description rdf:about="#R_MAR09116">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_ksii_core4_e"/>
@@ -363141,10 +363064,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02303e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02303e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09117" sboTerm="SBO:0000627" id="MAR09117" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09117" sboTerm="SBO:0000627" id="R_MAR09117" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -363152,7 +363075,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09117">
+            <rdf:Description rdf:about="#R_MAR09117">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_cspg_a_e"/>
@@ -363163,10 +363086,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01517e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01517e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09118" sboTerm="SBO:0000627" id="MAR09118" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09118" sboTerm="SBO:0000627" id="R_MAR09118" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -363174,7 +363097,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09118">
+            <rdf:Description rdf:about="#R_MAR09118">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_cspg_b_e"/>
@@ -363185,10 +363108,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01525e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01525e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09119" sboTerm="SBO:0000627" id="MAR09119" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09119" sboTerm="SBO:0000627" id="R_MAR09119" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -363196,7 +363119,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09119">
+            <rdf:Description rdf:about="#R_MAR09119">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_cspg_c_e"/>
@@ -363207,10 +363130,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01533e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01533e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09120" sboTerm="SBO:0000627" id="MAR09120" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09120" sboTerm="SBO:0000627" id="R_MAR09120" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -363218,7 +363141,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09120">
+            <rdf:Description rdf:about="#R_MAR09120">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_cspg_d_e"/>
@@ -363229,10 +363152,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01543e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01543e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09121" sboTerm="SBO:0000627" id="MAR09121" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09121" sboTerm="SBO:0000627" id="R_MAR09121" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -363240,7 +363163,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09121">
+            <rdf:Description rdf:about="#R_MAR09121">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_cspg_e_e"/>
@@ -363251,10 +363174,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01554e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01554e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09122" sboTerm="SBO:0000627" id="MAR09122" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09122" sboTerm="SBO:0000627" id="R_MAR09122" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -363262,7 +363185,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09122">
+            <rdf:Description rdf:about="#R_MAR09122">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_ha_e"/>
@@ -363273,10 +363196,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02141e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02141e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09123" sboTerm="SBO:0000627" id="MAR09123" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09123" sboTerm="SBO:0000627" id="R_MAR09123" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -363284,7 +363207,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09123">
+            <rdf:Description rdf:about="#R_MAR09123">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_ha_pre1_e"/>
@@ -363295,10 +363218,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02139e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02139e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09124" sboTerm="SBO:0000627" id="MAR09124" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09124" sboTerm="SBO:0000627" id="R_MAR09124" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -363306,7 +363229,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09124">
+            <rdf:Description rdf:about="#R_MAR09124">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_s2l2n2m2masn_e"/>
@@ -363317,10 +363240,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01652e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01652e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09125" sboTerm="SBO:0000627" id="MAR09125" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09125" sboTerm="SBO:0000627" id="R_MAR09125" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -363328,7 +363251,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09125">
+            <rdf:Description rdf:about="#R_MAR09125">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_s2l2fn2m2masn_e"/>
@@ -363339,10 +363262,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02672e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02672e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09126" sboTerm="SBO:0000627" id="MAR09126" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09126" sboTerm="SBO:0000627" id="R_MAR09126" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -363350,7 +363273,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09126">
+            <rdf:Description rdf:about="#R_MAR09126">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_n2m2nmasn_e"/>
@@ -363361,10 +363284,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02510e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02510e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09127" sboTerm="SBO:0000627" id="MAR09127" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09127" sboTerm="SBO:0000627" id="R_MAR09127" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -363372,7 +363295,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09127">
+            <rdf:Description rdf:about="#R_MAR09127">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_sTn_antigen_e"/>
@@ -363383,10 +363306,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02907e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02907e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09128" sboTerm="SBO:0000627" id="MAR09128" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09128" sboTerm="SBO:0000627" id="R_MAR09128" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -363394,7 +363317,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09128">
+            <rdf:Description rdf:about="#R_MAR09128">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/EX_dsT_antigen[e]"/>
@@ -363404,10 +363327,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01712e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01712e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09129" sboTerm="SBO:0000627" id="MAR09129" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09129" sboTerm="SBO:0000627" id="R_MAR09129" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -363415,7 +363338,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09129">
+            <rdf:Description rdf:about="#R_MAR09129">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_estradiolglc_e"/>
@@ -363426,10 +363349,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01786e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01786e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09130" sboTerm="SBO:0000627" id="MAR09130" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09130" sboTerm="SBO:0000627" id="R_MAR09130" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -363437,7 +363360,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09130">
+            <rdf:Description rdf:about="#R_MAR09130">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/EX_pre_prot[e]"/>
@@ -363447,10 +363370,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02414e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02414e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09131" sboTerm="SBO:0000627" id="MAR09131" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09131" sboTerm="SBO:0000627" id="R_MAR09131" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -363458,7 +363381,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09131">
+            <rdf:Description rdf:about="#R_MAR09131">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_sarcs_e"/>
@@ -363469,10 +363392,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02880e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02880e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09132" sboTerm="SBO:0000627" id="MAR09132" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09132" sboTerm="SBO:0000627" id="R_MAR09132" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -363480,7 +363403,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09132">
+            <rdf:Description rdf:about="#R_MAR09132">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_acac_e"/>
@@ -363491,10 +363414,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01253e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01253e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09133" sboTerm="SBO:0000627" id="MAR09133" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09133" sboTerm="SBO:0000627" id="R_MAR09133" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -363502,7 +363425,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09133">
+            <rdf:Description rdf:about="#R_MAR09133">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_pyr_e"/>
@@ -363513,10 +363436,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02819e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02819e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09134" sboTerm="SBO:0000627" id="MAR09134" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09134" sboTerm="SBO:0000627" id="R_MAR09134" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -363524,7 +363447,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09134">
+            <rdf:Description rdf:about="#R_MAR09134">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_bhb_e"/>
@@ -363535,10 +363458,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00157e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00157e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09135" sboTerm="SBO:0000627" id="MAR09135" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09135" sboTerm="SBO:0000627" id="R_MAR09135" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -363546,7 +363469,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09135">
+            <rdf:Description rdf:about="#R_MAR09135">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_lac__L_e"/>
@@ -363557,10 +363480,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02403e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02403e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09136" sboTerm="SBO:0000627" id="MAR09136" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09136" sboTerm="SBO:0000627" id="R_MAR09136" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -363568,7 +363491,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09136">
+            <rdf:Description rdf:about="#R_MAR09136">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_lac__D_e"/>
@@ -363579,10 +363502,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01716e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01716e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09137" sboTerm="SBO:0000627" id="MAR09137" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09137" sboTerm="SBO:0000627" id="R_MAR09137" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -363590,7 +363513,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09137">
+            <rdf:Description rdf:about="#R_MAR09137">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_man_e"/>
@@ -363601,10 +363524,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02453e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02453e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09138" sboTerm="SBO:0000627" id="MAR09138" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09138" sboTerm="SBO:0000627" id="R_MAR09138" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -363612,7 +363535,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09138">
+            <rdf:Description rdf:about="#R_MAR09138">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_xylt_e"/>
@@ -363623,10 +363546,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03155e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03155e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09139" sboTerm="SBO:0000627" id="MAR09139" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09139" sboTerm="SBO:0000627" id="R_MAR09139" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -363635,7 +363558,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09139">
+            <rdf:Description rdf:about="#R_MAR09139">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_fru_e"/>
@@ -363646,10 +363569,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01840e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01840e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09140" sboTerm="SBO:0000627" id="MAR09140" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09140" sboTerm="SBO:0000627" id="R_MAR09140" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -363657,7 +363580,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09140">
+            <rdf:Description rdf:about="#R_MAR09140">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_gal_e"/>
@@ -363668,10 +363591,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01910e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01910e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09141" sboTerm="SBO:0000627" id="MAR09141" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09141" sboTerm="SBO:0000627" id="R_MAR09141" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -363679,7 +363602,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09141">
+            <rdf:Description rdf:about="#R_MAR09141">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_adprib_e"/>
@@ -363690,10 +363613,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01288e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01288e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09142" sboTerm="SBO:0000627" id="MAR09142" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09142" sboTerm="SBO:0000627" id="R_MAR09142" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -363701,7 +363624,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09142">
+            <rdf:Description rdf:about="#R_MAR09142">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_nac_e"/>
@@ -363712,10 +363635,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02586e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02586e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09143" sboTerm="SBO:0000627" id="MAR09143" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09143" sboTerm="SBO:0000627" id="R_MAR09143" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -363723,7 +363646,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09143">
+            <rdf:Description rdf:about="#R_MAR09143">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_ribflv_e"/>
@@ -363735,10 +363658,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02842e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02842e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09144" sboTerm="SBO:0000627" id="MAR09144" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09144" sboTerm="SBO:0000627" id="R_MAR09144" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -363746,7 +363669,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09144">
+            <rdf:Description rdf:about="#R_MAR09144">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_pydxn_e"/>
@@ -363758,10 +363681,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02817e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02817e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09145" sboTerm="SBO:0000627" id="MAR09145" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09145" sboTerm="SBO:0000627" id="R_MAR09145" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -363769,7 +363692,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09145">
+            <rdf:Description rdf:about="#R_MAR09145">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_pnto__R_e"/>
@@ -363780,10 +363703,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02680e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02680e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09146" sboTerm="SBO:0000627" id="MAR09146" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09146" sboTerm="SBO:0000627" id="R_MAR09146" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -363792,7 +363715,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09146">
+            <rdf:Description rdf:about="#R_MAR09146">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_fol_e"/>
@@ -363804,10 +363727,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01830e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01830e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09147" sboTerm="SBO:0000627" id="MAR09147" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09147" sboTerm="SBO:0000627" id="R_MAR09147" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -363815,7 +363738,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09147">
+            <rdf:Description rdf:about="#R_MAR09147">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_retinol_e"/>
@@ -363826,10 +363749,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02834e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02834e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09148" sboTerm="SBO:0000627" id="MAR09148" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09148" sboTerm="SBO:0000627" id="R_MAR09148" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -363837,7 +363760,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09148">
+            <rdf:Description rdf:about="#R_MAR09148">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_i_e"/>
@@ -363848,10 +363771,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02174e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02174e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09149" sboTerm="SBO:0000627" id="MAR09149" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09149" sboTerm="SBO:0000627" id="R_MAR09149" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -363859,7 +363782,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09149">
+            <rdf:Description rdf:about="#R_MAR09149">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_no2_e"/>
@@ -363871,10 +363794,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02588e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02588e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09150" sboTerm="SBO:0000627" id="MAR09150" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09150" sboTerm="SBO:0000627" id="R_MAR09150" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -363882,7 +363805,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09150">
+            <rdf:Description rdf:about="#R_MAR09150">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_cl_e"/>
@@ -363894,10 +363817,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01442e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01442e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09151" sboTerm="SBO:0000627" id="MAR09151" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09151" sboTerm="SBO:0000627" id="R_MAR09151" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -363905,7 +363828,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09151">
+            <rdf:Description rdf:about="#R_MAR09151">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_avite1_e"/>
@@ -363916,10 +363839,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01327e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01327e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09152" sboTerm="SBO:0000627" id="MAR09152" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09152" sboTerm="SBO:0000627" id="R_MAR09152" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -363927,7 +363850,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09152">
+            <rdf:Description rdf:about="#R_MAR09152">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_avite2_e"/>
@@ -363938,10 +363861,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01330e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01330e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09153" sboTerm="SBO:0000627" id="MAR09153" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09153" sboTerm="SBO:0000627" id="R_MAR09153" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -363949,7 +363872,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09153">
+            <rdf:Description rdf:about="#R_MAR09153">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/F1PGT"/>
@@ -363961,10 +363884,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01935e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01935e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09154" sboTerm="SBO:0000627" id="MAR09154" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09154" sboTerm="SBO:0000627" id="R_MAR09154" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -363972,7 +363895,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09154">
+            <rdf:Description rdf:about="#R_MAR09154">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/EX_dad_5[e]"/>
@@ -363982,10 +363905,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01938e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01938e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09155" sboTerm="SBO:0000627" id="MAR09155" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09155" sboTerm="SBO:0000627" id="R_MAR09155" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -363993,7 +363916,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09155">
+            <rdf:Description rdf:about="#R_MAR09155">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_itp_e"/>
@@ -364004,10 +363927,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02193e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02193e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09156" sboTerm="SBO:0000627" id="MAR09156" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09156" sboTerm="SBO:0000627" id="R_MAR09156" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -364015,7 +363938,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09156">
+            <rdf:Description rdf:about="#R_MAR09156">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/EX_ditp[e]"/>
@@ -364025,10 +363948,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01714e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01714e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09157" sboTerm="SBO:0000627" id="MAR09157" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09157" sboTerm="SBO:0000627" id="R_MAR09157" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -364037,7 +363960,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09157">
+            <rdf:Description rdf:about="#R_MAR09157">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/EX_M02723[e]"/>
@@ -364047,10 +363970,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02050e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02050e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09158" sboTerm="SBO:0000627" id="MAR09158" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09158" sboTerm="SBO:0000627" id="R_MAR09158" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -364058,7 +363981,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09158">
+            <rdf:Description rdf:about="#R_MAR09158">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_ascb__L_e"/>
@@ -364069,10 +363992,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01368e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01368e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09159" sboTerm="SBO:0000627" id="MAR09159" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09159" sboTerm="SBO:0000627" id="R_MAR09159" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -364081,7 +364004,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09159">
+            <rdf:Description rdf:about="#R_MAR09159">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_thm_e"/>
@@ -364093,10 +364016,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02982e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02982e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09160" sboTerm="SBO:0000627" id="MAR09160" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09160" sboTerm="SBO:0000627" id="R_MAR09160" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -364104,7 +364027,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09160">
+            <rdf:Description rdf:about="#R_MAR09160">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_cyan_e"/>
@@ -364115,10 +364038,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02145e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02145e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09161" sboTerm="SBO:0000627" id="MAR09161" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09161" sboTerm="SBO:0000627" id="R_MAR09161" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -364127,7 +364050,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09161">
+            <rdf:Description rdf:about="#R_MAR09161">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_hom__L_e"/>
@@ -364138,10 +364061,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02136e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02136e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09162" sboTerm="SBO:0000627" id="MAR09162" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09162" sboTerm="SBO:0000627" id="R_MAR09162" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -364149,7 +364072,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09162">
+            <rdf:Description rdf:about="#R_MAR09162">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/EX_HC01787[e]"/>
@@ -364159,10 +364082,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02357e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02357e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09163" sboTerm="SBO:0000627" id="MAR09163" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09163" sboTerm="SBO:0000627" id="R_MAR09163" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -364170,7 +364093,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09163">
+            <rdf:Description rdf:about="#R_MAR09163">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/EX_leuktrF4[e]"/>
@@ -364180,10 +364103,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02370e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02370e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09164" sboTerm="SBO:0000627" id="MAR09164" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09164" sboTerm="SBO:0000627" id="R_MAR09164" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -364191,7 +364114,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09164">
+            <rdf:Description rdf:about="#R_MAR09164">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/EX_HC00319[e]"/>
@@ -364201,10 +364124,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02440e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02440e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09165" sboTerm="SBO:0000627" id="MAR09165" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09165" sboTerm="SBO:0000627" id="R_MAR09165" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -364212,7 +364135,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09165">
+            <rdf:Description rdf:about="#R_MAR09165">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_pe_hs_e"/>
@@ -364223,10 +364146,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02661e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02661e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09166" sboTerm="SBO:0000627" id="MAR09166" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09166" sboTerm="SBO:0000627" id="R_MAR09166" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -364235,7 +364158,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09166">
+            <rdf:Description rdf:about="#R_MAR09166">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_chtn_e"/>
@@ -364246,10 +364169,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01438e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01438e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09167" sboTerm="SBO:0000627" id="MAR09167" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09167" sboTerm="SBO:0000627" id="R_MAR09167" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -364257,7 +364180,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09167">
+            <rdf:Description rdf:about="#R_MAR09167">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_lipoate_e"/>
@@ -364268,10 +364191,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02394e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02394e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09168" sboTerm="SBO:0000627" id="MAR09168" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09168" sboTerm="SBO:0000627" id="R_MAR09168" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -364280,7 +364203,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09168">
+            <rdf:Description rdf:about="#R_MAR09168">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_gam_e"/>
@@ -364291,10 +364214,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01962e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01962e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09169" sboTerm="SBO:0000627" id="MAR09169" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09169" sboTerm="SBO:0000627" id="R_MAR09169" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -364302,7 +364225,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09169">
+            <rdf:Description rdf:about="#R_MAR09169">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_sel_e"/>
@@ -364313,10 +364236,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02885e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02885e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09171" sboTerm="SBO:0000627" id="MAR09171" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09171" sboTerm="SBO:0000627" id="R_MAR09171" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -364324,7 +364247,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09171">
+            <rdf:Description rdf:about="#R_MAR09171">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_paf_hs_e"/>
@@ -364335,10 +364258,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00626e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00626e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09172" sboTerm="SBO:0000627" id="MAR09172" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09172" sboTerm="SBO:0000627" id="R_MAR09172" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -364346,7 +364269,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09172">
+            <rdf:Description rdf:about="#R_MAR09172">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/AK2LGCHOLt"/>
@@ -364357,10 +364280,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00549e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00549e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09201" sboTerm="SBO:0000627" id="MAR09201" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09201" sboTerm="SBO:0000627" id="R_MAR09201" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -364368,7 +364291,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09201">
+            <rdf:Description rdf:about="#R_MAR09201">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_citr__L_e"/>
@@ -364379,10 +364302,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01588e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01588e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09202" sboTerm="SBO:0000627" id="MAR09202" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09202" sboTerm="SBO:0000627" id="R_MAR09202" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -364390,7 +364313,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09202">
+            <rdf:Description rdf:about="#R_MAR09202">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/EX_xtp[e]"/>
@@ -364400,10 +364323,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01356e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01356e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09203" sboTerm="SBO:0000627" id="MAR09203" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09203" sboTerm="SBO:0000627" id="R_MAR09203" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -364411,7 +364334,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09203">
+            <rdf:Description rdf:about="#R_MAR09203">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_yvite_e"/>
@@ -364422,10 +364345,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01758e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01758e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09204" sboTerm="SBO:0000627" id="MAR09204" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09204" sboTerm="SBO:0000627" id="R_MAR09204" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -364433,7 +364356,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#meta_MAR09204">
+            <rdf:Description rdf:about="#meta_R_MAR09204">
               <bqbiol:is>
                 <rdf:Bag/>
               </bqbiol:is>
@@ -364441,10 +364364,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02001e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02001e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09205" sboTerm="SBO:0000627" id="MAR09205" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09205" sboTerm="SBO:0000627" id="R_MAR09205" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -364452,7 +364375,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09205">
+            <rdf:Description rdf:about="#R_MAR09205">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_10fthf6glu_e"/>
@@ -364463,10 +364386,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00266e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00266e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09206" sboTerm="SBO:0000627" id="MAR09206" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09206" sboTerm="SBO:0000627" id="R_MAR09206" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -364474,7 +364397,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09206">
+            <rdf:Description rdf:about="#R_MAR09206">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_10fthf7glu_e"/>
@@ -364485,10 +364408,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00267e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00267e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09207" sboTerm="SBO:0000627" id="MAR09207" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09207" sboTerm="SBO:0000627" id="R_MAR09207" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -364496,7 +364419,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09207">
+            <rdf:Description rdf:about="#R_MAR09207">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_11_cis_retfa_e"/>
@@ -364507,10 +364430,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00268e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00268e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09208" sboTerm="SBO:0000627" id="MAR09208" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09208" sboTerm="SBO:0000627" id="R_MAR09208" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -364518,7 +364441,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09208">
+            <rdf:Description rdf:about="#R_MAR09208">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_13_cis_retnglc_e"/>
@@ -364529,10 +364452,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00269e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00269e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09209" sboTerm="SBO:0000627" id="MAR09209" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09209" sboTerm="SBO:0000627" id="R_MAR09209" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -364540,7 +364463,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09209">
+            <rdf:Description rdf:about="#R_MAR09209">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_1glyc_hs_e"/>
@@ -364551,10 +364474,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM10005e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM10005e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09210" sboTerm="SBO:0000627" id="MAR09210" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09210" sboTerm="SBO:0000627" id="R_MAR09210" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -364562,7 +364485,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09210">
+            <rdf:Description rdf:about="#R_MAR09210">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_2425dhvitd3_e"/>
@@ -364573,10 +364496,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00353e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00353e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09211" sboTerm="SBO:0000627" id="MAR09211" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09211" sboTerm="SBO:0000627" id="R_MAR09211" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -364584,7 +364507,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09211">
+            <rdf:Description rdf:about="#R_MAR09211">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_25hvitd3_e"/>
@@ -364595,10 +364518,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00613e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00613e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09212" sboTerm="SBO:0000627" id="MAR09212" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09212" sboTerm="SBO:0000627" id="R_MAR09212" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -364606,7 +364529,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09212">
+            <rdf:Description rdf:about="#R_MAR09212">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_2hb_e"/>
@@ -364617,10 +364540,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00035e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00035e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09213" sboTerm="SBO:0000627" id="MAR09213" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09213" sboTerm="SBO:0000627" id="R_MAR09213" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -364628,7 +364551,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09213">
+            <rdf:Description rdf:about="#R_MAR09213">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_2mcit_e"/>
@@ -364639,10 +364562,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01019e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01019e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09214" sboTerm="SBO:0000627" id="MAR09214" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09214" sboTerm="SBO:0000627" id="R_MAR09214" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -364650,7 +364573,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09214">
+            <rdf:Description rdf:about="#R_MAR09214">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_34dhoxpeg_e"/>
@@ -364661,10 +364584,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00620e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00620e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09215" sboTerm="SBO:0000627" id="MAR09215" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09215" sboTerm="SBO:0000627" id="R_MAR09215" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -364672,7 +364595,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09215">
+            <rdf:Description rdf:about="#R_MAR09215">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_34dhphe_e"/>
@@ -364683,10 +364606,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01415e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01415e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09216" sboTerm="SBO:0000627" id="MAR09216" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09216" sboTerm="SBO:0000627" id="R_MAR09216" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -364694,7 +364617,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09216">
+            <rdf:Description rdf:about="#R_MAR09216">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_35cgmp_e"/>
@@ -364705,10 +364628,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00648e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00648e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09217" sboTerm="SBO:0000627" id="MAR09217" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09217" sboTerm="SBO:0000627" id="R_MAR09217" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -364716,7 +364639,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09217">
+            <rdf:Description rdf:about="#R_MAR09217">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_3aib_e"/>
@@ -364727,10 +364650,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00665e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00665e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09218" sboTerm="SBO:0000627" id="MAR09218" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09218" sboTerm="SBO:0000627" id="R_MAR09218" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -364738,7 +364661,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09218">
+            <rdf:Description rdf:about="#R_MAR09218">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_3aib__D_e"/>
@@ -364749,10 +364672,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00730e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00730e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09219" sboTerm="SBO:0000627" id="MAR09219" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09219" sboTerm="SBO:0000627" id="R_MAR09219" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -364760,7 +364683,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09219">
+            <rdf:Description rdf:about="#R_MAR09219">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_3mlda_e"/>
@@ -364771,10 +364694,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02354e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02354e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09220" sboTerm="SBO:0000627" id="MAR09220" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09220" sboTerm="SBO:0000627" id="R_MAR09220" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -364782,7 +364705,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09220">
+            <rdf:Description rdf:about="#R_MAR09220">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_4abut_e"/>
@@ -364793,10 +364716,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01433e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01433e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09221" sboTerm="SBO:0000627" id="MAR09221" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09221" sboTerm="SBO:0000627" id="R_MAR09221" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -364804,7 +364727,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09221">
+            <rdf:Description rdf:about="#R_MAR09221">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_4hdebrisoquine_e"/>
@@ -364815,10 +364738,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02325e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02325e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09222" sboTerm="SBO:0000627" id="MAR09222" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09222" sboTerm="SBO:0000627" id="R_MAR09222" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -364826,7 +364749,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09222">
+            <rdf:Description rdf:about="#R_MAR09222">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_4hphac_e"/>
@@ -364837,10 +364760,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01633e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01633e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09223" sboTerm="SBO:0000627" id="MAR09223" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09223" sboTerm="SBO:0000627" id="R_MAR09223" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -364848,7 +364771,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09223">
+            <rdf:Description rdf:about="#R_MAR09223">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_4nph_e"/>
@@ -364859,10 +364782,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00998e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00998e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09224" sboTerm="SBO:0000627" id="MAR09224" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09224" sboTerm="SBO:0000627" id="R_MAR09224" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -364870,7 +364793,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09224">
+            <rdf:Description rdf:about="#R_MAR09224">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_4nphsf_e"/>
@@ -364881,10 +364804,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01003e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01003e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09225" sboTerm="SBO:0000627" id="MAR09225" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09225" sboTerm="SBO:0000627" id="R_MAR09225" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -364892,7 +364815,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09225">
+            <rdf:Description rdf:about="#R_MAR09225">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_4pyrdx_e"/>
@@ -364903,10 +364826,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02182e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02182e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09226" sboTerm="SBO:0000627" id="MAR09226" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09226" sboTerm="SBO:0000627" id="R_MAR09226" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -364914,7 +364837,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09226">
+            <rdf:Description rdf:about="#R_MAR09226">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_5adtststerone_e"/>
@@ -364925,10 +364848,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01007e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01007e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09227" sboTerm="SBO:0000627" id="MAR09227" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09227" sboTerm="SBO:0000627" id="R_MAR09227" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -364936,7 +364859,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09227">
+            <rdf:Description rdf:about="#R_MAR09227">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_5adtststerones_e"/>
@@ -364947,10 +364870,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01021e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01021e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09228" sboTerm="SBO:0000627" id="MAR09228" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09228" sboTerm="SBO:0000627" id="R_MAR09228" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -364958,7 +364881,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09228">
+            <rdf:Description rdf:about="#R_MAR09228">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_5dhf_e"/>
@@ -364969,10 +364892,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01033e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01033e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09229" sboTerm="SBO:0000627" id="MAR09229" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09229" sboTerm="SBO:0000627" id="R_MAR09229" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -364980,7 +364903,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09229">
+            <rdf:Description rdf:about="#R_MAR09229">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_5fthf_e"/>
@@ -364991,10 +364914,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01069e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01069e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09230" sboTerm="SBO:0000627" id="MAR09230" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09230" sboTerm="SBO:0000627" id="R_MAR09230" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -365002,7 +364925,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09230">
+            <rdf:Description rdf:about="#R_MAR09230">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_5homeprazole_e"/>
@@ -365013,10 +364936,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01070e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01070e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09231" sboTerm="SBO:0000627" id="MAR09231" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09231" sboTerm="SBO:0000627" id="R_MAR09231" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -365024,7 +364947,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09231">
+            <rdf:Description rdf:about="#R_MAR09231">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_5htrp_e"/>
@@ -365035,10 +364958,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01071e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01071e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09232" sboTerm="SBO:0000627" id="MAR09232" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09232" sboTerm="SBO:0000627" id="R_MAR09232" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -365046,7 +364969,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09232">
+            <rdf:Description rdf:about="#R_MAR09232">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_5mthf_e"/>
@@ -365057,10 +364980,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02691e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02691e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09233" sboTerm="SBO:0000627" id="MAR09233" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09233" sboTerm="SBO:0000627" id="R_MAR09233" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -365068,7 +364991,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09233">
+            <rdf:Description rdf:about="#R_MAR09233">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_6dhf_e"/>
@@ -365079,10 +365002,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01109e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01109e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09234" sboTerm="SBO:0000627" id="MAR09234" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09234" sboTerm="SBO:0000627" id="R_MAR09234" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -365090,7 +365013,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09234">
+            <rdf:Description rdf:about="#R_MAR09234">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_6thf_e"/>
@@ -365101,10 +365024,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01115e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01115e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09235" sboTerm="SBO:0000627" id="MAR09235" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09235" sboTerm="SBO:0000627" id="R_MAR09235" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -365112,7 +365035,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09235">
+            <rdf:Description rdf:about="#R_MAR09235">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_7dhf_e"/>
@@ -365123,10 +365046,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02692e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02692e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09236" sboTerm="SBO:0000627" id="MAR09236" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09236" sboTerm="SBO:0000627" id="R_MAR09236" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -365134,7 +365057,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09236">
+            <rdf:Description rdf:about="#R_MAR09236">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_7thf_e"/>
@@ -365145,10 +365068,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02118e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02118e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09237" sboTerm="SBO:0000627" id="MAR09237" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09237" sboTerm="SBO:0000627" id="R_MAR09237" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -365156,7 +365079,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09237">
+            <rdf:Description rdf:about="#R_MAR09237">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_9_cis_retfa_e"/>
@@ -365167,10 +365090,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01158e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01158e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09238" sboTerm="SBO:0000627" id="MAR09238" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09238" sboTerm="SBO:0000627" id="R_MAR09238" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -365178,7 +365101,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09238">
+            <rdf:Description rdf:about="#R_MAR09238">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_abt_e"/>
@@ -365189,10 +365112,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02119e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02119e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09239" sboTerm="SBO:0000627" id="MAR09239" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09239" sboTerm="SBO:0000627" id="R_MAR09239" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -365200,7 +365123,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09239">
+            <rdf:Description rdf:about="#R_MAR09239">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_ac_e"/>
@@ -365212,10 +365135,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02104e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02104e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09240" sboTerm="SBO:0000627" id="MAR09240" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09240" sboTerm="SBO:0000627" id="R_MAR09240" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -365223,7 +365146,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09240">
+            <rdf:Description rdf:about="#R_MAR09240">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_acac_e"/>
@@ -365234,10 +365157,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02105e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02105e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09241" sboTerm="SBO:0000627" id="MAR09241" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09241" sboTerm="SBO:0000627" id="R_MAR09241" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -365245,7 +365168,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09241">
+            <rdf:Description rdf:about="#R_MAR09241">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_acald_e"/>
@@ -365256,10 +365179,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02338e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02338e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09242" sboTerm="SBO:0000627" id="MAR09242" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09242" sboTerm="SBO:0000627" id="R_MAR09242" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -365267,7 +365190,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09242">
+            <rdf:Description rdf:about="#R_MAR09242">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_acgalfucgalacgalfucgalacglcgal14acglcgalgluside_hs_e"/>
@@ -365278,10 +365201,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01249e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01249e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09243" sboTerm="SBO:0000627" id="MAR09243" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09243" sboTerm="SBO:0000627" id="R_MAR09243" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -365289,7 +365212,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09243">
+            <rdf:Description rdf:about="#R_MAR09243">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_acgam_e"/>
@@ -365300,10 +365223,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01256e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01256e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09244" sboTerm="SBO:0000627" id="MAR09244" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09244" sboTerm="SBO:0000627" id="R_MAR09244" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -365311,7 +365234,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09244">
+            <rdf:Description rdf:about="#R_MAR09244">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_ach_e"/>
@@ -365322,10 +365245,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03096e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03096e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09245" sboTerm="SBO:0000627" id="MAR09245" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09245" sboTerm="SBO:0000627" id="R_MAR09245" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -365333,7 +365256,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09245">
+            <rdf:Description rdf:about="#R_MAR09245">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_acn13acngalgbside_hs_e"/>
@@ -365344,10 +365267,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03098e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03098e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09246" sboTerm="SBO:0000627" id="MAR09246" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09246" sboTerm="SBO:0000627" id="R_MAR09246" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -365355,7 +365278,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09246">
+            <rdf:Description rdf:about="#R_MAR09246">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_acn23acngalgbside_hs_e"/>
@@ -365366,10 +365289,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02527e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02527e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09247" sboTerm="SBO:0000627" id="MAR09247" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09247" sboTerm="SBO:0000627" id="R_MAR09247" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -365377,7 +365300,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09247">
+            <rdf:Description rdf:about="#R_MAR09247">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_acnacngal14acglcgalgluside_hs_e"/>
@@ -365388,10 +365311,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01260e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01260e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09248" sboTerm="SBO:0000627" id="MAR09248" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09248" sboTerm="SBO:0000627" id="R_MAR09248" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -365399,7 +365322,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09248">
+            <rdf:Description rdf:about="#R_MAR09248">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_acnacngalgbside_hs_e"/>
@@ -365410,10 +365333,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02902e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02902e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09249" sboTerm="SBO:0000627" id="MAR09249" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09249" sboTerm="SBO:0000627" id="R_MAR09249" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -365421,7 +365344,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09249">
+            <rdf:Description rdf:about="#R_MAR09249">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_acngalacglcgal14acglcgalgluside_hs_e"/>
@@ -365432,10 +365355,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02903e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02903e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09250" sboTerm="SBO:0000627" id="MAR09250" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09250" sboTerm="SBO:0000627" id="R_MAR09250" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -365443,7 +365366,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09250">
+            <rdf:Description rdf:about="#R_MAR09250">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_ade_e"/>
@@ -365454,10 +365377,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00744e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00744e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09251" sboTerm="SBO:0000627" id="MAR09251" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09251" sboTerm="SBO:0000627" id="R_MAR09251" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -365465,7 +365388,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09251">
+            <rdf:Description rdf:about="#R_MAR09251">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_adn_e"/>
@@ -365476,10 +365399,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01711e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01711e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09252" sboTerm="SBO:0000627" id="MAR09252" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09252" sboTerm="SBO:0000627" id="R_MAR09252" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -365487,7 +365410,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09252">
+            <rdf:Description rdf:about="#R_MAR09252">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_adp_e"/>
@@ -365499,10 +365422,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03138e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03138e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09253" sboTerm="SBO:0000627" id="MAR09253" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09253" sboTerm="SBO:0000627" id="R_MAR09253" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -365510,7 +365433,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09253">
+            <rdf:Description rdf:about="#R_MAR09253">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_adprbp_e"/>
@@ -365521,10 +365444,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01279e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01279e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09254" sboTerm="SBO:0000627" id="MAR09254" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09254" sboTerm="SBO:0000627" id="R_MAR09254" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -365532,7 +365455,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09254">
+            <rdf:Description rdf:about="#R_MAR09254">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_adprib_e"/>
@@ -365543,10 +365466,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01280e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01280e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09255" sboTerm="SBO:0000627" id="MAR09255" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09255" sboTerm="SBO:0000627" id="R_MAR09255" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -365554,7 +365477,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09255">
+            <rdf:Description rdf:about="#R_MAR09255">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_adrn_e"/>
@@ -365565,10 +365488,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01285e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09256" sboTerm="SBO:0000627" id="MAR09256" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09256" sboTerm="SBO:0000627" id="R_MAR09256" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -365576,7 +365499,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09256">
+            <rdf:Description rdf:about="#R_MAR09256">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_adrnl_e"/>
@@ -365587,10 +365510,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01289e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01289e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09257" sboTerm="SBO:0000627" id="MAR09257" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09257" sboTerm="SBO:0000627" id="R_MAR09257" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -365598,7 +365521,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09257">
+            <rdf:Description rdf:about="#R_MAR09257">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_ala_B_e"/>
@@ -365609,10 +365532,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01799e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01799e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09258" sboTerm="SBO:0000627" id="MAR09258" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09258" sboTerm="SBO:0000627" id="R_MAR09258" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -365620,7 +365543,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09258">
+            <rdf:Description rdf:about="#R_MAR09258">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_ala__D_e"/>
@@ -365632,10 +365555,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00516e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00516e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09259" sboTerm="SBO:0000627" id="MAR09259" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09259" sboTerm="SBO:0000627" id="R_MAR09259" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -365643,7 +365566,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09259">
+            <rdf:Description rdf:about="#R_MAR09259">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_ala__L_e"/>
@@ -365654,10 +365577,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01306e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01306e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09260" sboTerm="SBO:0000627" id="MAR09260" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09260" sboTerm="SBO:0000627" id="R_MAR09260" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -365665,7 +365588,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09260">
+            <rdf:Description rdf:about="#R_MAR09260">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_aldstrn_e"/>
@@ -365676,10 +365599,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01383e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01383e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09261" sboTerm="SBO:0000627" id="MAR09261" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09261" sboTerm="SBO:0000627" id="R_MAR09261" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -365687,7 +365610,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09261">
+            <rdf:Description rdf:about="#R_MAR09261">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_andrstrnglc_e"/>
@@ -365698,10 +365621,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01309e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01309e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09262" sboTerm="SBO:0000627" id="MAR09262" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09262" sboTerm="SBO:0000627" id="R_MAR09262" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -365709,7 +365632,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09262">
+            <rdf:Description rdf:about="#R_MAR09262">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_antipyrene_e"/>
@@ -365720,10 +365643,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01334e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09263" sboTerm="SBO:0000627" id="MAR09263" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09263" sboTerm="SBO:0000627" id="R_MAR09263" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -365731,7 +365654,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09263">
+            <rdf:Description rdf:about="#R_MAR09263">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_apnnox_e"/>
@@ -365742,10 +365665,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01338e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01338e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09264" sboTerm="SBO:0000627" id="MAR09264" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09264" sboTerm="SBO:0000627" id="R_MAR09264" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -365753,7 +365676,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09264">
+            <rdf:Description rdf:about="#R_MAR09264">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_appnn_e"/>
@@ -365764,10 +365687,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01339e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01339e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09265" sboTerm="SBO:0000627" id="MAR09265" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09265" sboTerm="SBO:0000627" id="R_MAR09265" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -365775,7 +365698,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09265">
+            <rdf:Description rdf:about="#R_MAR09265">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_aprgstrn_e"/>
@@ -365786,10 +365709,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01344e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01344e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09266" sboTerm="SBO:0000627" id="MAR09266" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09266" sboTerm="SBO:0000627" id="R_MAR09266" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -365797,7 +365720,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09266">
+            <rdf:Description rdf:about="#R_MAR09266">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_aqcobal_e"/>
@@ -365808,10 +365731,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01326e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01326e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09267" sboTerm="SBO:0000627" id="MAR09267" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09267" sboTerm="SBO:0000627" id="R_MAR09267" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -365819,7 +365742,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09267">
+            <rdf:Description rdf:about="#R_MAR09267">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_arab__L_e"/>
@@ -365831,10 +365754,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00002e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00002e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09268" sboTerm="SBO:0000627" id="MAR09268" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09268" sboTerm="SBO:0000627" id="R_MAR09268" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -365842,7 +365765,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09268">
+            <rdf:Description rdf:about="#R_MAR09268">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_arach_e"/>
@@ -365853,10 +365776,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00580e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00580e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09269" sboTerm="SBO:0000627" id="MAR09269" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09269" sboTerm="SBO:0000627" id="R_MAR09269" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -365864,7 +365787,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09269">
+            <rdf:Description rdf:about="#R_MAR09269">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_arachd_e"/>
@@ -365875,10 +365798,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01361e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01361e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09270" sboTerm="SBO:0000627" id="MAR09270" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09270" sboTerm="SBO:0000627" id="R_MAR09270" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -365886,7 +365809,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09270">
+            <rdf:Description rdf:about="#R_MAR09270">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_arg__L_e"/>
@@ -365898,10 +365821,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02337e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02337e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09271" sboTerm="SBO:0000627" id="MAR09271" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09271" sboTerm="SBO:0000627" id="R_MAR09271" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -365909,7 +365832,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09271">
+            <rdf:Description rdf:about="#R_MAR09271">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_biocyt_e"/>
@@ -365920,10 +365843,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01397e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01397e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09272" sboTerm="SBO:0000627" id="MAR09272" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09272" sboTerm="SBO:0000627" id="R_MAR09272" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -365931,7 +365854,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09272">
+            <rdf:Description rdf:about="#R_MAR09272">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_btn_e"/>
@@ -365943,10 +365866,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01398e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01398e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09273" sboTerm="SBO:0000627" id="MAR09273" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09273" sboTerm="SBO:0000627" id="R_MAR09273" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -365954,7 +365877,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09273">
+            <rdf:Description rdf:about="#R_MAR09273">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_but_e"/>
@@ -365966,10 +365889,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01396e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01396e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09275" sboTerm="SBO:0000627" id="MAR09275" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09275" sboTerm="SBO:0000627" id="R_MAR09275" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -365977,7 +365900,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09275">
+            <rdf:Description rdf:about="#R_MAR09275">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_cca_d3_e"/>
@@ -365988,10 +365911,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01419e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01419e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09276" sboTerm="SBO:0000627" id="MAR09276" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09276" sboTerm="SBO:0000627" id="R_MAR09276" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -365999,7 +365922,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09276">
+            <rdf:Description rdf:about="#R_MAR09276">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_cgly_e"/>
@@ -366010,10 +365933,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01385e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01385e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09277" sboTerm="SBO:0000627" id="MAR09277" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09277" sboTerm="SBO:0000627" id="R_MAR09277" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -366021,7 +365944,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09277">
+            <rdf:Description rdf:about="#R_MAR09277">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_chol_e"/>
@@ -366032,10 +365955,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00001e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00001e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09278" sboTerm="SBO:0000627" id="MAR09278" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09278" sboTerm="SBO:0000627" id="R_MAR09278" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -366043,7 +365966,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09278">
+            <rdf:Description rdf:about="#R_MAR09278">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_cholate_e"/>
@@ -366054,10 +365977,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01418e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01418e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09279" sboTerm="SBO:0000627" id="MAR09279" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09279" sboTerm="SBO:0000627" id="R_MAR09279" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -366065,7 +365988,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09279">
+            <rdf:Description rdf:about="#R_MAR09279">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_chsterol_e"/>
@@ -366076,10 +365999,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01626e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01626e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09280" sboTerm="SBO:0000627" id="MAR09280" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09280" sboTerm="SBO:0000627" id="R_MAR09280" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -366087,7 +366010,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09280">
+            <rdf:Description rdf:about="#R_MAR09280">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_cit_e"/>
@@ -366098,10 +366021,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01445e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01445e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09281" sboTerm="SBO:0000627" id="MAR09281" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09281" sboTerm="SBO:0000627" id="R_MAR09281" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -366109,7 +366032,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09281">
+            <rdf:Description rdf:about="#R_MAR09281">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_gdp_e"/>
@@ -366120,10 +366043,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01988e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01988e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09282" sboTerm="SBO:0000627" id="MAR09282" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09282" sboTerm="SBO:0000627" id="R_MAR09282" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -366131,7 +366054,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09282">
+            <rdf:Description rdf:about="#R_MAR09282">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_tdchola_e"/>
@@ -366142,10 +366065,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02963e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02963e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09283" sboTerm="SBO:0000627" id="MAR09283" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09283" sboTerm="SBO:0000627" id="R_MAR09283" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -366153,7 +366076,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09283">
+            <rdf:Description rdf:about="#R_MAR09283">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_dheas_e"/>
@@ -366164,10 +366087,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01987e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01987e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09284" sboTerm="SBO:0000627" id="MAR09284" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09284" sboTerm="SBO:0000627" id="R_MAR09284" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -366175,7 +366098,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09284">
+            <rdf:Description rdf:about="#R_MAR09284">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_tetpent3_e"/>
@@ -366186,10 +366109,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02962e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02962e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09285" sboTerm="SBO:0000627" id="MAR09285" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09285" sboTerm="SBO:0000627" id="R_MAR09285" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -366197,7 +366120,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09285">
+            <rdf:Description rdf:about="#R_MAR09285">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_cl_e"/>
@@ -366209,10 +366132,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01450e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09286" sboTerm="SBO:0000627" id="MAR09286" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09286" sboTerm="SBO:0000627" id="R_MAR09286" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -366220,7 +366143,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09286">
+            <rdf:Description rdf:about="#R_MAR09286">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_cmp_e"/>
@@ -366231,10 +366154,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01587e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01587e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09287" sboTerm="SBO:0000627" id="MAR09287" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09287" sboTerm="SBO:0000627" id="R_MAR09287" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -366242,7 +366165,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09287">
+            <rdf:Description rdf:about="#R_MAR09287">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_coumarin_e"/>
@@ -366253,10 +366176,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01590e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01590e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09288" sboTerm="SBO:0000627" id="MAR09288" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09288" sboTerm="SBO:0000627" id="R_MAR09288" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -366264,7 +366187,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09288">
+            <rdf:Description rdf:about="#R_MAR09288">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_creat_e"/>
@@ -366275,10 +366198,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01595e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01595e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09289" sboTerm="SBO:0000627" id="MAR09289" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09289" sboTerm="SBO:0000627" id="R_MAR09289" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -366286,7 +366209,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09289">
+            <rdf:Description rdf:about="#R_MAR09289">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_crn_e"/>
@@ -366297,10 +366220,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01617e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01617e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09290" sboTerm="SBO:0000627" id="MAR09290" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09290" sboTerm="SBO:0000627" id="R_MAR09290" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -366308,7 +366231,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09290">
+            <rdf:Description rdf:about="#R_MAR09290">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_crtsl_e"/>
@@ -366319,10 +366242,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01619e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01619e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09291" sboTerm="SBO:0000627" id="MAR09291" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09291" sboTerm="SBO:0000627" id="R_MAR09291" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -366330,7 +366253,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09291">
+            <rdf:Description rdf:about="#R_MAR09291">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_cspg_c_e"/>
@@ -366341,10 +366264,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01632e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01632e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09292" sboTerm="SBO:0000627" id="MAR09292" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09292" sboTerm="SBO:0000627" id="R_MAR09292" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -366352,7 +366275,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09292">
+            <rdf:Description rdf:about="#R_MAR09292">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_crvnc_e"/>
@@ -366363,10 +366286,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02348e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09293" sboTerm="SBO:0000627" id="MAR09293" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09293" sboTerm="SBO:0000627" id="R_MAR09293" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -366374,7 +366297,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09293">
+            <rdf:Description rdf:about="#R_MAR09293">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_csn_e"/>
@@ -366386,10 +366309,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01615e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01615e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09294" sboTerm="SBO:0000627" id="MAR09294" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09294" sboTerm="SBO:0000627" id="R_MAR09294" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -366397,7 +366320,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09294">
+            <rdf:Description rdf:about="#R_MAR09294">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_cspg_a_e"/>
@@ -366408,10 +366331,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01614e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01614e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09295" sboTerm="SBO:0000627" id="MAR09295" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09295" sboTerm="SBO:0000627" id="R_MAR09295" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -366419,7 +366342,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09295">
+            <rdf:Description rdf:about="#R_MAR09295">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_dag_hs_e"/>
@@ -366430,10 +366353,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01630e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01630e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09296" sboTerm="SBO:0000627" id="MAR09296" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09296" sboTerm="SBO:0000627" id="R_MAR09296" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -366441,7 +366364,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09296">
+            <rdf:Description rdf:about="#R_MAR09296">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_dgsn_e"/>
@@ -366452,10 +366375,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01668e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01668e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09297" sboTerm="SBO:0000627" id="MAR09297" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09297" sboTerm="SBO:0000627" id="R_MAR09297" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -366463,7 +366386,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09297">
+            <rdf:Description rdf:about="#R_MAR09297">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_dcsptn1_e"/>
@@ -366474,10 +366397,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01666e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01666e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09298" sboTerm="SBO:0000627" id="MAR09298" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09298" sboTerm="SBO:0000627" id="R_MAR09298" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -366485,7 +366408,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09298">
+            <rdf:Description rdf:about="#R_MAR09298">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_dcyt_e"/>
@@ -366496,10 +366419,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01098e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01098e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09299" sboTerm="SBO:0000627" id="MAR09299" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09299" sboTerm="SBO:0000627" id="R_MAR09299" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -366507,7 +366430,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09299">
+            <rdf:Description rdf:about="#R_MAR09299">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_dhdascb_e"/>
@@ -366518,10 +366441,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01647e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01647e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09300" sboTerm="SBO:0000627" id="MAR09300" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09300" sboTerm="SBO:0000627" id="R_MAR09300" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -366529,7 +366452,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09300">
+            <rdf:Description rdf:about="#R_MAR09300">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_digalsgalside_hs_e"/>
@@ -366540,10 +366463,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01669e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01669e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09301" sboTerm="SBO:0000627" id="MAR09301" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09301" sboTerm="SBO:0000627" id="R_MAR09301" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -366551,7 +366474,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09301">
+            <rdf:Description rdf:about="#R_MAR09301">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_din_e"/>
@@ -366562,10 +366485,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01655e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01655e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09302" sboTerm="SBO:0000627" id="MAR09302" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09302" sboTerm="SBO:0000627" id="R_MAR09302" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -366573,7 +366496,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09302">
+            <rdf:Description rdf:about="#R_MAR09302">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_dlnlcg_e"/>
@@ -366584,10 +366507,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01659e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01659e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09303" sboTerm="SBO:0000627" id="MAR09303" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09303" sboTerm="SBO:0000627" id="R_MAR09303" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -366595,7 +366518,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09303">
+            <rdf:Description rdf:about="#R_MAR09303">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_dmantipyrine_e"/>
@@ -366606,10 +366529,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01700e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01700e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09304" sboTerm="SBO:0000627" id="MAR09304" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09304" sboTerm="SBO:0000627" id="R_MAR09304" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -366617,7 +366540,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09304">
+            <rdf:Description rdf:about="#R_MAR09304">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_dmhptcrn_e"/>
@@ -366628,10 +366551,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01695e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01695e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09305" sboTerm="SBO:0000627" id="MAR09305" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09305" sboTerm="SBO:0000627" id="R_MAR09305" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -366639,7 +366562,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09305">
+            <rdf:Description rdf:about="#R_MAR09305">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_dopa_e"/>
@@ -366650,10 +366573,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01671e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01671e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09306" sboTerm="SBO:0000627" id="MAR09306" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09306" sboTerm="SBO:0000627" id="R_MAR09306" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -366661,7 +366584,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09306">
+            <rdf:Description rdf:about="#R_MAR09306">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_drib_e"/>
@@ -366672,10 +366595,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01768e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01768e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09307" sboTerm="SBO:0000627" id="MAR09307" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09307" sboTerm="SBO:0000627" id="R_MAR09307" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -366683,7 +366606,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09307">
+            <rdf:Description rdf:about="#R_MAR09307">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_duri_e"/>
@@ -366694,10 +366617,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00577e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00577e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09308" sboTerm="SBO:0000627" id="MAR09308" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09308" sboTerm="SBO:0000627" id="R_MAR09308" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -366705,7 +366628,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09308">
+            <rdf:Description rdf:about="#R_MAR09308">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_ebastine_e"/>
@@ -366716,10 +366639,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01737e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01737e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09309" sboTerm="SBO:0000627" id="MAR09309" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09309" sboTerm="SBO:0000627" id="R_MAR09309" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -366727,7 +366650,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09309">
+            <rdf:Description rdf:about="#R_MAR09309">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_ebastineoh_e"/>
@@ -366738,10 +366661,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01672e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01672e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09310" sboTerm="SBO:0000627" id="MAR09310" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09310" sboTerm="SBO:0000627" id="R_MAR09310" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -366749,7 +366672,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09310">
+            <rdf:Description rdf:about="#R_MAR09310">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_eicostet_e"/>
@@ -366760,10 +366683,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01673e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01673e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09311" sboTerm="SBO:0000627" id="MAR09311" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09311" sboTerm="SBO:0000627" id="R_MAR09311" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -366771,7 +366694,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09311">
+            <rdf:Description rdf:about="#R_MAR09311">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_elaid_e"/>
@@ -366782,10 +366705,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01298e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01298e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09312" sboTerm="SBO:0000627" id="MAR09312" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09312" sboTerm="SBO:0000627" id="R_MAR09312" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -366793,7 +366716,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09312">
+            <rdf:Description rdf:about="#R_MAR09312">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_estradiol_e"/>
@@ -366804,10 +366727,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01765e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01765e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09313" sboTerm="SBO:0000627" id="MAR09313" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09313" sboTerm="SBO:0000627" id="R_MAR09313" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -366815,7 +366738,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09313">
+            <rdf:Description rdf:about="#R_MAR09313">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_estradiolglc_e"/>
@@ -366826,10 +366749,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02150e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02150e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09314" sboTerm="SBO:0000627" id="MAR09314" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09314" sboTerm="SBO:0000627" id="R_MAR09314" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -366837,7 +366760,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09314">
+            <rdf:Description rdf:about="#R_MAR09314">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_estrones_e"/>
@@ -366848,10 +366771,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01787e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01787e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09315" sboTerm="SBO:0000627" id="MAR09315" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09315" sboTerm="SBO:0000627" id="R_MAR09315" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -366859,7 +366782,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09315">
+            <rdf:Description rdf:about="#R_MAR09315">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_fe2_e"/>
@@ -366871,10 +366794,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00402e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00402e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09316" sboTerm="SBO:0000627" id="MAR09316" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09316" sboTerm="SBO:0000627" id="R_MAR09316" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -366882,7 +366805,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09316">
+            <rdf:Description rdf:about="#R_MAR09316">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_fe3_e"/>
@@ -366894,10 +366817,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01795e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01795e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09317" sboTerm="SBO:0000627" id="MAR09317" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09317" sboTerm="SBO:0000627" id="R_MAR09317" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -366905,7 +366828,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09317">
+            <rdf:Description rdf:about="#R_MAR09317">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_fol_e"/>
@@ -366917,10 +366840,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01789e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01789e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09318" sboTerm="SBO:0000627" id="MAR09318" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09318" sboTerm="SBO:0000627" id="R_MAR09318" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -366928,7 +366851,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09318">
+            <rdf:Description rdf:about="#R_MAR09318">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_fucacgalfucgalacglcgalgluside_hs_e"/>
@@ -366939,10 +366862,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01833e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01833e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09319" sboTerm="SBO:0000627" id="MAR09319" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09319" sboTerm="SBO:0000627" id="R_MAR09319" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -366950,7 +366873,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09319">
+            <rdf:Description rdf:about="#R_MAR09319">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_fucacngalacglcgalgluside_hs_e"/>
@@ -366961,10 +366884,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02164e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02164e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09320" sboTerm="SBO:0000627" id="MAR09320" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09320" sboTerm="SBO:0000627" id="R_MAR09320" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -366972,7 +366895,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09320">
+            <rdf:Description rdf:about="#R_MAR09320">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_fucfuc12gal14acglcgalgluside_hs_e"/>
@@ -366983,10 +366906,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01999e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01999e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09321" sboTerm="SBO:0000627" id="MAR09321" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09321" sboTerm="SBO:0000627" id="R_MAR09321" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -366994,7 +366917,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09321">
+            <rdf:Description rdf:about="#R_MAR09321">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_fucfucfucgalacglcgal14acglcgalgluside_hs_e"/>
@@ -367005,10 +366928,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01850e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01850e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09322" sboTerm="SBO:0000627" id="MAR09322" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09322" sboTerm="SBO:0000627" id="R_MAR09322" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -367016,7 +366939,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09322">
+            <rdf:Description rdf:about="#R_MAR09322">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_fucfucgalacglcgalgluside_hs_e"/>
@@ -367027,10 +366950,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02199e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02199e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09323" sboTerm="SBO:0000627" id="MAR09323" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09323" sboTerm="SBO:0000627" id="R_MAR09323" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -367038,7 +366961,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09323">
+            <rdf:Description rdf:about="#R_MAR09323">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_fucgal14acglcgalgluside_hs_e"/>
@@ -367049,10 +366972,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02198e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02198e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09324" sboTerm="SBO:0000627" id="MAR09324" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09324" sboTerm="SBO:0000627" id="R_MAR09324" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -367060,7 +366983,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09324">
+            <rdf:Description rdf:about="#R_MAR09324">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_fucgalfucgalacglcgalgluside_hs_e"/>
@@ -367071,10 +366994,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01851e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01851e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09325" sboTerm="SBO:0000627" id="MAR09325" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09325" sboTerm="SBO:0000627" id="R_MAR09325" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -367082,7 +367005,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09325">
+            <rdf:Description rdf:about="#R_MAR09325">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_fucgalgbside_hs_e"/>
@@ -367093,10 +367016,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01852e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01852e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09326" sboTerm="SBO:0000627" id="MAR09326" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09326" sboTerm="SBO:0000627" id="R_MAR09326" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -367104,7 +367027,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09326">
+            <rdf:Description rdf:about="#R_MAR09326">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_fuc__L_e"/>
@@ -367115,10 +367038,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01853e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01853e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09327" sboTerm="SBO:0000627" id="MAR09327" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09327" sboTerm="SBO:0000627" id="R_MAR09327" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -367126,7 +367049,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09327">
+            <rdf:Description rdf:about="#R_MAR09327">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_gal_e"/>
@@ -367138,10 +367061,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02331e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02331e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09328" sboTerm="SBO:0000627" id="MAR09328" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09328" sboTerm="SBO:0000627" id="R_MAR09328" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -367149,7 +367072,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09328">
+            <rdf:Description rdf:about="#R_MAR09328">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_galacglcgalgbside_hs_e"/>
@@ -367160,10 +367083,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01859e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01859e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09329" sboTerm="SBO:0000627" id="MAR09329" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09329" sboTerm="SBO:0000627" id="R_MAR09329" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -367171,7 +367094,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09329">
+            <rdf:Description rdf:about="#R_MAR09329">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_galfuc12gal14acglcgalgluside_hs_e"/>
@@ -367182,10 +367105,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01861e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01861e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09330" sboTerm="SBO:0000627" id="MAR09330" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09330" sboTerm="SBO:0000627" id="R_MAR09330" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -367193,7 +367116,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09330">
+            <rdf:Description rdf:about="#R_MAR09330">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_galfucgalacglcgal14acglcgalgluside_hs_e"/>
@@ -367204,10 +367127,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01159e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01159e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09331" sboTerm="SBO:0000627" id="MAR09331" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09331" sboTerm="SBO:0000627" id="R_MAR09331" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -367215,7 +367138,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09331">
+            <rdf:Description rdf:about="#R_MAR09331">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_galgalgalthcrm_hs_e"/>
@@ -367226,10 +367149,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01919e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01919e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09332" sboTerm="SBO:0000627" id="MAR09332" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09332" sboTerm="SBO:0000627" id="R_MAR09332" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -367237,7 +367160,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09332">
+            <rdf:Description rdf:about="#R_MAR09332">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_gam_e"/>
@@ -367248,10 +367171,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01914e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01914e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09333" sboTerm="SBO:0000627" id="MAR09333" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09333" sboTerm="SBO:0000627" id="R_MAR09333" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -367259,7 +367182,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09333">
+            <rdf:Description rdf:about="#R_MAR09333">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_gbside_hs_e"/>
@@ -367269,10 +367192,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01915e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01915e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09334" sboTerm="SBO:0000627" id="MAR09334" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09334" sboTerm="SBO:0000627" id="R_MAR09334" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -367280,7 +367203,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09334">
+            <rdf:Description rdf:about="#R_MAR09334">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_gchola_e"/>
@@ -367291,10 +367214,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01916e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01916e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09335" sboTerm="SBO:0000627" id="MAR09335" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09335" sboTerm="SBO:0000627" id="R_MAR09335" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -367302,7 +367225,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09335">
+            <rdf:Description rdf:about="#R_MAR09335">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_gd1b2_hs_e"/>
@@ -367313,10 +367236,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01917e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01917e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09336" sboTerm="SBO:0000627" id="MAR09336" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09336" sboTerm="SBO:0000627" id="R_MAR09336" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -367324,7 +367247,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09336">
+            <rdf:Description rdf:about="#R_MAR09336">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_gdchola_e"/>
@@ -367335,10 +367258,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01959e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01959e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09337" sboTerm="SBO:0000627" id="MAR09337" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09337" sboTerm="SBO:0000627" id="R_MAR09337" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -367346,7 +367269,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09337">
+            <rdf:Description rdf:about="#R_MAR09337">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_glc__D_e"/>
@@ -367358,10 +367281,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01944e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01944e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09338" sboTerm="SBO:0000627" id="MAR09338" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09338" sboTerm="SBO:0000627" id="R_MAR09338" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -367369,7 +367292,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09338">
+            <rdf:Description rdf:about="#R_MAR09338">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_glyb_e"/>
@@ -367381,10 +367304,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00097e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00097e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09339" sboTerm="SBO:0000627" id="MAR09339" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09339" sboTerm="SBO:0000627" id="R_MAR09339" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -367392,7 +367315,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09339">
+            <rdf:Description rdf:about="#R_MAR09339">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_gln__L_e"/>
@@ -367404,10 +367327,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01945e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01945e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09340" sboTerm="SBO:0000627" id="MAR09340" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09340" sboTerm="SBO:0000627" id="R_MAR09340" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -367415,7 +367338,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09340">
+            <rdf:Description rdf:about="#R_MAR09340">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_gluala_e"/>
@@ -367426,10 +367349,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01948e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01948e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09341" sboTerm="SBO:0000627" id="MAR09341" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09341" sboTerm="SBO:0000627" id="R_MAR09341" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -367437,7 +367360,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09341">
+            <rdf:Description rdf:about="#R_MAR09341">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_glygn2_e"/>
@@ -367448,10 +367371,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01393e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01393e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09342" sboTerm="SBO:0000627" id="MAR09342" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09342" sboTerm="SBO:0000627" id="R_MAR09342" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -367459,7 +367382,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09342">
+            <rdf:Description rdf:about="#R_MAR09342">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_glygn5_e"/>
@@ -367470,10 +367393,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01982e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01982e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09343" sboTerm="SBO:0000627" id="MAR09343" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09343" sboTerm="SBO:0000627" id="R_MAR09343" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -367481,7 +367404,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09343">
+            <rdf:Description rdf:about="#R_MAR09343">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_gq1b_hs_e"/>
@@ -367492,10 +367415,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02016e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02016e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09344" sboTerm="SBO:0000627" id="MAR09344" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09344" sboTerm="SBO:0000627" id="R_MAR09344" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -367503,7 +367426,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09344">
+            <rdf:Description rdf:about="#R_MAR09344">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_gq1balpha_hs_e"/>
@@ -367514,10 +367437,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02018e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02018e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09345" sboTerm="SBO:0000627" id="MAR09345" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09345" sboTerm="SBO:0000627" id="R_MAR09345" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -367525,7 +367448,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09345">
+            <rdf:Description rdf:about="#R_MAR09345">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_gsn_e"/>
@@ -367536,10 +367459,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02019e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02019e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09346" sboTerm="SBO:0000627" id="MAR09346" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09346" sboTerm="SBO:0000627" id="R_MAR09346" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -367547,7 +367470,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09346">
+            <rdf:Description rdf:about="#R_MAR09346">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_gt1a_hs_e"/>
@@ -367558,10 +367481,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02023e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02023e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09347" sboTerm="SBO:0000627" id="MAR09347" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09347" sboTerm="SBO:0000627" id="R_MAR09347" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -367569,7 +367492,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09347">
+            <rdf:Description rdf:about="#R_MAR09347">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_gthox_e"/>
@@ -367580,10 +367503,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02024e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02024e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09348" sboTerm="SBO:0000627" id="MAR09348" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09348" sboTerm="SBO:0000627" id="R_MAR09348" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -367591,7 +367514,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09348">
+            <rdf:Description rdf:about="#R_MAR09348">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_gthrd_e"/>
@@ -367602,10 +367525,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02038e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02038e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09349" sboTerm="SBO:0000627" id="MAR09349" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09349" sboTerm="SBO:0000627" id="R_MAR09349" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -367613,7 +367536,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09349">
+            <rdf:Description rdf:about="#R_MAR09349">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_gtp_e"/>
@@ -367624,10 +367547,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02028e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02028e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09350" sboTerm="SBO:0000627" id="MAR09350" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09350" sboTerm="SBO:0000627" id="R_MAR09350" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -367635,7 +367558,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09350">
+            <rdf:Description rdf:about="#R_MAR09350">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_gua_e"/>
@@ -367646,10 +367569,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02027e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02027e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09351" sboTerm="SBO:0000627" id="MAR09351" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09351" sboTerm="SBO:0000627" id="R_MAR09351" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -367657,7 +367580,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09351">
+            <rdf:Description rdf:about="#R_MAR09351">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_h_e"/>
@@ -367669,10 +367592,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02026e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09352" sboTerm="SBO:0000627" id="MAR09352" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09352" sboTerm="SBO:0000627" id="R_MAR09352" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -367680,7 +367603,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09352">
+            <rdf:Description rdf:about="#R_MAR09352">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_h2o_e"/>
@@ -367692,10 +367615,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02034e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02034e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09353" sboTerm="SBO:0000627" id="MAR09353" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09353" sboTerm="SBO:0000627" id="R_MAR09353" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -367703,7 +367626,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09353">
+            <rdf:Description rdf:about="#R_MAR09353">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_h2o2_e"/>
@@ -367714,10 +367637,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02037e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02037e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09354" sboTerm="SBO:0000627" id="MAR09354" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09354" sboTerm="SBO:0000627" id="R_MAR09354" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -367725,7 +367648,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09354">
+            <rdf:Description rdf:about="#R_MAR09354">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_hco3_e"/>
@@ -367737,10 +367660,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02041e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09355" sboTerm="SBO:0000627" id="MAR09355" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09355" sboTerm="SBO:0000627" id="R_MAR09355" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -367748,7 +367671,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09355">
+            <rdf:Description rdf:about="#R_MAR09355">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_hista_e"/>
@@ -367759,10 +367682,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00986e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00986e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09356" sboTerm="SBO:0000627" id="MAR09356" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09356" sboTerm="SBO:0000627" id="R_MAR09356" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -367770,7 +367693,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09356">
+            <rdf:Description rdf:about="#R_MAR09356">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_hestratriol_e"/>
@@ -367781,10 +367704,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03113e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03113e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09357" sboTerm="SBO:0000627" id="MAR09357" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09357" sboTerm="SBO:0000627" id="R_MAR09357" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -367792,7 +367715,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09357">
+            <rdf:Description rdf:about="#R_MAR09357">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_idp_e"/>
@@ -367803,10 +367726,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01163e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01163e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09358" sboTerm="SBO:0000627" id="MAR09358" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09358" sboTerm="SBO:0000627" id="R_MAR09358" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -367814,7 +367737,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09358">
+            <rdf:Description rdf:about="#R_MAR09358">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_ile__L_e"/>
@@ -367826,10 +367749,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02159e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02159e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09359" sboTerm="SBO:0000627" id="MAR09359" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09359" sboTerm="SBO:0000627" id="R_MAR09359" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -367837,7 +367760,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09359">
+            <rdf:Description rdf:about="#R_MAR09359">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_inost_e"/>
@@ -367849,10 +367772,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02161e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02161e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09360" sboTerm="SBO:0000627" id="MAR09360" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09360" sboTerm="SBO:0000627" id="R_MAR09360" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -367860,7 +367783,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09360">
+            <rdf:Description rdf:about="#R_MAR09360">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_k_e"/>
@@ -367872,10 +367795,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02167e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02167e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09361" sboTerm="SBO:0000627" id="MAR09361" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09361" sboTerm="SBO:0000627" id="R_MAR09361" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -367883,7 +367806,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09361">
+            <rdf:Description rdf:about="#R_MAR09361">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_ksi_e"/>
@@ -367894,10 +367817,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02171e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02171e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09362" sboTerm="SBO:0000627" id="MAR09362" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09362" sboTerm="SBO:0000627" id="R_MAR09362" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -367905,7 +367828,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09362">
+            <rdf:Description rdf:about="#R_MAR09362">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_ksi_deg1_e"/>
@@ -367916,10 +367839,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02170e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02170e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09363" sboTerm="SBO:0000627" id="MAR09363" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09363" sboTerm="SBO:0000627" id="R_MAR09363" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -367927,7 +367850,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09363">
+            <rdf:Description rdf:about="#R_MAR09363">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_leuktrC4_e"/>
@@ -367938,10 +367861,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01629e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01629e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09364" sboTerm="SBO:0000627" id="MAR09364" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09364" sboTerm="SBO:0000627" id="R_MAR09364" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -367949,7 +367872,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09364">
+            <rdf:Description rdf:about="#R_MAR09364">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_leuktrD4_e"/>
@@ -367960,10 +367883,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02362e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02362e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09365" sboTerm="SBO:0000627" id="MAR09365" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09365" sboTerm="SBO:0000627" id="R_MAR09365" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -367971,7 +367894,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09365">
+            <rdf:Description rdf:about="#R_MAR09365">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_leuktrE4_e"/>
@@ -367982,10 +367905,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02364e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02364e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09366" sboTerm="SBO:0000627" id="MAR09366" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09366" sboTerm="SBO:0000627" id="R_MAR09366" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -367993,7 +367916,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09366">
+            <rdf:Description rdf:about="#R_MAR09366">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_leuktrF4_e"/>
@@ -368004,10 +367927,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02366e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02366e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09367" sboTerm="SBO:0000627" id="MAR09367" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09367" sboTerm="SBO:0000627" id="R_MAR09367" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -368015,7 +367938,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09367">
+            <rdf:Description rdf:about="#R_MAR09367">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_leu__L_e"/>
@@ -368027,10 +367950,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02418e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02418e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09368" sboTerm="SBO:0000627" id="MAR09368" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09368" sboTerm="SBO:0000627" id="R_MAR09368" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -368038,7 +367961,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09368">
+            <rdf:Description rdf:about="#R_MAR09368">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_lgnc_e"/>
@@ -368049,10 +367972,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02369e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02369e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09369" sboTerm="SBO:0000627" id="MAR09369" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09369" sboTerm="SBO:0000627" id="R_MAR09369" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -368060,7 +367983,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09369">
+            <rdf:Description rdf:about="#R_MAR09369">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_lnlc_e"/>
@@ -368071,10 +367994,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02386e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02386e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09370" sboTerm="SBO:0000627" id="MAR09370" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09370" sboTerm="SBO:0000627" id="R_MAR09370" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -368082,7 +368005,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09370">
+            <rdf:Description rdf:about="#R_MAR09370">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_meoh_e"/>
@@ -368093,10 +368016,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02450e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02450e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09371" sboTerm="SBO:0000627" id="MAR09371" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09371" sboTerm="SBO:0000627" id="R_MAR09371" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -368104,7 +368027,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09371">
+            <rdf:Description rdf:about="#R_MAR09371">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_mepi_e"/>
@@ -368115,10 +368038,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02452e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02452e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09372" sboTerm="SBO:0000627" id="MAR09372" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09372" sboTerm="SBO:0000627" id="R_MAR09372" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -368126,7 +368049,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09372">
+            <rdf:Description rdf:about="#R_MAR09372">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_met__L_e"/>
@@ -368138,10 +368061,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02470e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02470e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09373" sboTerm="SBO:0000627" id="MAR09373" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09373" sboTerm="SBO:0000627" id="R_MAR09373" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -368149,7 +368072,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09373">
+            <rdf:Description rdf:about="#R_MAR09373">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_mthgxl_e"/>
@@ -368160,10 +368083,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02407e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02407e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09374" sboTerm="SBO:0000627" id="MAR09374" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09374" sboTerm="SBO:0000627" id="R_MAR09374" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -368171,7 +368094,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09374">
+            <rdf:Description rdf:about="#R_MAR09374">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_n2m2nmasn_e"/>
@@ -368182,10 +368105,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00816e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00816e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09375" sboTerm="SBO:0000627" id="MAR09375" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09375" sboTerm="SBO:0000627" id="R_MAR09375" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -368193,7 +368116,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09375">
+            <rdf:Description rdf:about="#R_MAR09375">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_nac_e"/>
@@ -368204,10 +368127,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02475e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02475e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09376" sboTerm="SBO:0000627" id="MAR09376" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09376" sboTerm="SBO:0000627" id="R_MAR09376" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -368215,7 +368138,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09376">
+            <rdf:Description rdf:about="#R_MAR09376">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_nh4_e"/>
@@ -368227,10 +368150,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02552e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09377" sboTerm="SBO:0000627" id="MAR09377" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09377" sboTerm="SBO:0000627" id="R_MAR09377" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -368238,7 +368161,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09377">
+            <rdf:Description rdf:about="#R_MAR09377">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_nifedipine_e"/>
@@ -368249,10 +368172,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02554e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09378" sboTerm="SBO:0000627" id="MAR09378" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09378" sboTerm="SBO:0000627" id="R_MAR09378" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -368260,7 +368183,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09378">
+            <rdf:Description rdf:about="#R_MAR09378">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_no_e"/>
@@ -368271,10 +368194,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02583e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02583e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09379" sboTerm="SBO:0000627" id="MAR09379" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09379" sboTerm="SBO:0000627" id="R_MAR09379" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -368282,7 +368205,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09379">
+            <rdf:Description rdf:about="#R_MAR09379">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_nrpphr_e"/>
@@ -368296,10 +368219,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02587e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02587e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09380" sboTerm="SBO:0000627" id="MAR09380" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09380" sboTerm="SBO:0000627" id="R_MAR09380" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -368307,7 +368230,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09380">
+            <rdf:Description rdf:about="#R_MAR09380">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/EX_hnifedipine[e]"/>
@@ -368317,10 +368240,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02153e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02153e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09381" sboTerm="SBO:0000627" id="MAR09381" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09381" sboTerm="SBO:0000627" id="R_MAR09381" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -368328,7 +368251,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09381">
+            <rdf:Description rdf:about="#R_MAR09381">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_nrpphrsf_e"/>
@@ -368339,10 +368262,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02609e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02609e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09382" sboTerm="SBO:0000627" id="MAR09382" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09382" sboTerm="SBO:0000627" id="R_MAR09382" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -368350,7 +368273,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09382">
+            <rdf:Description rdf:about="#R_MAR09382">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_o2s_e"/>
@@ -368361,10 +368284,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02620e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02620e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09383" sboTerm="SBO:0000627" id="MAR09383" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09383" sboTerm="SBO:0000627" id="R_MAR09383" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -368372,7 +368295,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09383">
+            <rdf:Description rdf:about="#R_MAR09383">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_ocdca_e"/>
@@ -368383,10 +368306,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02631e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02631e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09384" sboTerm="SBO:0000627" id="MAR09384" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09384" sboTerm="SBO:0000627" id="R_MAR09384" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -368394,7 +368317,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09384">
+            <rdf:Description rdf:about="#R_MAR09384">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_ocdcea_e"/>
@@ -368405,10 +368328,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01244e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01244e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09385" sboTerm="SBO:0000627" id="MAR09385" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09385" sboTerm="SBO:0000627" id="R_MAR09385" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -368416,7 +368339,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09385">
+            <rdf:Description rdf:about="#R_MAR09385">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_octa_e"/>
@@ -368427,10 +368350,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01245e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01245e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09386" sboTerm="SBO:0000627" id="MAR09386" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09386" sboTerm="SBO:0000627" id="R_MAR09386" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -368438,7 +368361,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09386">
+            <rdf:Description rdf:about="#R_MAR09386">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_orn_e"/>
@@ -368449,10 +368372,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02147e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02147e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09387" sboTerm="SBO:0000627" id="MAR09387" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09387" sboTerm="SBO:0000627" id="R_MAR09387" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -368460,7 +368383,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09387">
+            <rdf:Description rdf:about="#R_MAR09387">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_oxa_e"/>
@@ -368472,10 +368395,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02653e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02653e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09388" sboTerm="SBO:0000627" id="MAR09388" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09388" sboTerm="SBO:0000627" id="R_MAR09388" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -368483,7 +368406,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09388">
+            <rdf:Description rdf:about="#R_MAR09388">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_paf_hs_e"/>
@@ -368494,10 +368417,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00032e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00032e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09389" sboTerm="SBO:0000627" id="MAR09389" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09389" sboTerm="SBO:0000627" id="R_MAR09389" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -368505,7 +368428,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09389">
+            <rdf:Description rdf:about="#R_MAR09389">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_pheacgln_e"/>
@@ -368516,10 +368439,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00204e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00204e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09390" sboTerm="SBO:0000627" id="MAR09390" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09390" sboTerm="SBO:0000627" id="R_MAR09390" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -368527,7 +368450,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09390">
+            <rdf:Description rdf:about="#R_MAR09390">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_phe__L_e"/>
@@ -368538,10 +368461,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02712e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02712e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09391" sboTerm="SBO:0000627" id="MAR09391" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09391" sboTerm="SBO:0000627" id="R_MAR09391" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -368549,7 +368472,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09391">
+            <rdf:Description rdf:about="#R_MAR09391">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_pheacgln_e"/>
@@ -368560,10 +368483,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02722e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02722e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09392" sboTerm="SBO:0000627" id="MAR09392" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09392" sboTerm="SBO:0000627" id="R_MAR09392" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -368571,7 +368494,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09392">
+            <rdf:Description rdf:about="#R_MAR09392">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_pnto__R_e"/>
@@ -368582,10 +368505,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02744e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02744e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09393" sboTerm="SBO:0000627" id="MAR09393" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09393" sboTerm="SBO:0000627" id="R_MAR09393" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -368593,7 +368516,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09393">
+            <rdf:Description rdf:about="#R_MAR09393">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_prostgd2_e"/>
@@ -368604,10 +368527,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02769e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02769e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09394" sboTerm="SBO:0000627" id="MAR09394" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09394" sboTerm="SBO:0000627" id="R_MAR09394" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -368615,7 +368538,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09394">
+            <rdf:Description rdf:about="#R_MAR09394">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_prostge1_e"/>
@@ -368626,10 +368549,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01742e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01742e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09395" sboTerm="SBO:0000627" id="MAR09395" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09395" sboTerm="SBO:0000627" id="R_MAR09395" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -368637,7 +368560,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09395">
+            <rdf:Description rdf:about="#R_MAR09395">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_prostgf2_e"/>
@@ -368648,10 +368571,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02783e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02783e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09396" sboTerm="SBO:0000627" id="MAR09396" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09396" sboTerm="SBO:0000627" id="R_MAR09396" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -368659,7 +368582,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09396">
+            <rdf:Description rdf:about="#R_MAR09396">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_ps_hs_e"/>
@@ -368670,10 +368593,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02785e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02785e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09397" sboTerm="SBO:0000627" id="MAR09397" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09397" sboTerm="SBO:0000627" id="R_MAR09397" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -368681,7 +368604,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09397">
+            <rdf:Description rdf:about="#R_MAR09397">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_ptdca_e"/>
@@ -368692,10 +368615,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02786e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02786e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09398" sboTerm="SBO:0000627" id="MAR09398" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09398" sboTerm="SBO:0000627" id="R_MAR09398" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -368703,7 +368626,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09398">
+            <rdf:Description rdf:about="#R_MAR09398">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_pydam_e"/>
@@ -368714,10 +368637,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02789e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02789e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09399" sboTerm="SBO:0000627" id="MAR09399" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09399" sboTerm="SBO:0000627" id="R_MAR09399" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -368725,7 +368648,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09399">
+            <rdf:Description rdf:about="#R_MAR09399">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_pyr_e"/>
@@ -368737,10 +368660,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02815e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02815e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09400" sboTerm="SBO:0000627" id="MAR09400" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09400" sboTerm="SBO:0000627" id="R_MAR09400" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -368748,7 +368671,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09400">
+            <rdf:Description rdf:about="#R_MAR09400">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_rbt_e"/>
@@ -368759,10 +368682,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02813e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02813e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09401" sboTerm="SBO:0000627" id="MAR09401" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09401" sboTerm="SBO:0000627" id="R_MAR09401" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -368770,7 +368693,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09401">
+            <rdf:Description rdf:about="#R_MAR09401">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_retinol_9_cis_e"/>
@@ -368781,10 +368704,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02841e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02841e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09404" sboTerm="SBO:0000627" id="MAR09404" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09404" sboTerm="SBO:0000627" id="R_MAR09404" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -368792,7 +368715,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09404">
+            <rdf:Description rdf:about="#R_MAR09404">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_rib__D_e"/>
@@ -368804,10 +368727,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02833e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02833e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09405" sboTerm="SBO:0000627" id="MAR09405" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09405" sboTerm="SBO:0000627" id="R_MAR09405" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -368815,7 +368738,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09405">
+            <rdf:Description rdf:about="#R_MAR09405">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_ribflv_e"/>
@@ -368827,10 +368750,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02836e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02836e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09406" sboTerm="SBO:0000627" id="MAR09406" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09406" sboTerm="SBO:0000627" id="R_MAR09406" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -368838,7 +368761,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09406">
+            <rdf:Description rdf:about="#R_MAR09406">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_Rtotal_e"/>
@@ -368849,10 +368772,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02843e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02843e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09407" sboTerm="SBO:0000627" id="MAR09407" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09407" sboTerm="SBO:0000627" id="R_MAR09407" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -368860,7 +368783,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09407">
+            <rdf:Description rdf:about="#R_MAR09407">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_sl__L_e"/>
@@ -368871,10 +368794,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01744e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01744e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09408" sboTerm="SBO:0000627" id="MAR09408" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09408" sboTerm="SBO:0000627" id="R_MAR09408" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -368882,7 +368805,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09408">
+            <rdf:Description rdf:about="#R_MAR09408">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_spc_hs_e"/>
@@ -368893,10 +368816,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00179e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00179e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09409" sboTerm="SBO:0000627" id="MAR09409" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09409" sboTerm="SBO:0000627" id="R_MAR09409" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -368904,7 +368827,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09409">
+            <rdf:Description rdf:about="#R_MAR09409">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_sphs1p_e"/>
@@ -368915,10 +368838,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02931e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02931e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09410" sboTerm="SBO:0000627" id="MAR09410" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09410" sboTerm="SBO:0000627" id="R_MAR09410" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -368926,7 +368849,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09410">
+            <rdf:Description rdf:about="#R_MAR09410">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_srtn_e"/>
@@ -368937,10 +368860,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02928e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02928e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09411" sboTerm="SBO:0000627" id="MAR09411" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09411" sboTerm="SBO:0000627" id="R_MAR09411" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -368948,7 +368871,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09411">
+            <rdf:Description rdf:about="#R_MAR09411">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_strch1_e"/>
@@ -368959,10 +368882,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02930e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02930e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09412" sboTerm="SBO:0000627" id="MAR09412" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09412" sboTerm="SBO:0000627" id="R_MAR09412" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -368970,7 +368893,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09412">
+            <rdf:Description rdf:about="#R_MAR09412">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_strch2_e"/>
@@ -368981,10 +368904,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02897e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02897e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09413" sboTerm="SBO:0000627" id="MAR09413" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09413" sboTerm="SBO:0000627" id="R_MAR09413" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -368992,7 +368915,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09413">
+            <rdf:Description rdf:about="#R_MAR09413">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_strdnc_e"/>
@@ -369003,10 +368926,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02936e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02936e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09414" sboTerm="SBO:0000627" id="MAR09414" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09414" sboTerm="SBO:0000627" id="R_MAR09414" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -369014,7 +368937,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09414">
+            <rdf:Description rdf:about="#R_MAR09414">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_succ_e"/>
@@ -369025,10 +368948,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02937e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02937e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09415" sboTerm="SBO:0000627" id="MAR09415" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09415" sboTerm="SBO:0000627" id="R_MAR09415" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -369036,7 +368959,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09415">
+            <rdf:Description rdf:about="#R_MAR09415">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_tag_hs_e"/>
@@ -369047,10 +368970,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02943e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02943e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09416" sboTerm="SBO:0000627" id="MAR09416" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09416" sboTerm="SBO:0000627" id="R_MAR09416" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -369058,7 +368981,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09416">
+            <rdf:Description rdf:about="#R_MAR09416">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_sucr_e"/>
@@ -369069,10 +368992,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02945e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02945e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09417" sboTerm="SBO:0000627" id="MAR09417" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09417" sboTerm="SBO:0000627" id="R_MAR09417" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -369080,7 +369003,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09417">
+            <rdf:Description rdf:about="#R_MAR09417">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_taxol_e"/>
@@ -369091,10 +369014,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01745e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01745e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09418" sboTerm="SBO:0000627" id="MAR09418" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09418" sboTerm="SBO:0000627" id="R_MAR09418" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -369102,7 +369025,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09418">
+            <rdf:Description rdf:about="#R_MAR09418">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_tchola_e"/>
@@ -369113,10 +369036,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02961e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02961e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09419" sboTerm="SBO:0000627" id="MAR09419" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09419" sboTerm="SBO:0000627" id="R_MAR09419" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -369124,7 +369047,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09419">
+            <rdf:Description rdf:about="#R_MAR09419">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_tcynt_e"/>
@@ -369135,10 +369058,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02673e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02673e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09420" sboTerm="SBO:0000627" id="MAR09420" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09420" sboTerm="SBO:0000627" id="R_MAR09420" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -369146,7 +369069,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09420">
+            <rdf:Description rdf:about="#R_MAR09420">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_tethex3_e"/>
@@ -369157,10 +369080,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02986e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02986e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09421" sboTerm="SBO:0000627" id="MAR09421" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09421" sboTerm="SBO:0000627" id="R_MAR09421" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -369168,7 +369091,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09421">
+            <rdf:Description rdf:about="#R_MAR09421">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_thmmp_e"/>
@@ -369179,10 +369102,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02980e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02980e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09422" sboTerm="SBO:0000627" id="MAR09422" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09422" sboTerm="SBO:0000627" id="R_MAR09422" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -369190,7 +369113,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09422">
+            <rdf:Description rdf:about="#R_MAR09422">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_thyox__L_e"/>
@@ -369201,10 +369124,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02997e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02997e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09423" sboTerm="SBO:0000627" id="MAR09423" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09423" sboTerm="SBO:0000627" id="R_MAR09423" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -369212,7 +369135,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09423">
+            <rdf:Description rdf:about="#R_MAR09423">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_tmndnc_e"/>
@@ -369223,10 +369146,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02996e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02996e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09424" sboTerm="SBO:0000627" id="MAR09424" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09424" sboTerm="SBO:0000627" id="R_MAR09424" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -369234,7 +369157,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09424">
+            <rdf:Description rdf:about="#R_MAR09424">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_tolbutamide_e"/>
@@ -369245,10 +369168,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02998e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02998e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09425" sboTerm="SBO:0000627" id="MAR09425" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09425" sboTerm="SBO:0000627" id="R_MAR09425" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -369256,7 +369179,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09425">
+            <rdf:Description rdf:about="#R_MAR09425">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_triodthy_e"/>
@@ -369267,10 +369190,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03001e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03001e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09426" sboTerm="SBO:0000627" id="MAR09426" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09426" sboTerm="SBO:0000627" id="R_MAR09426" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -369278,7 +369201,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09426">
+            <rdf:Description rdf:about="#R_MAR09426">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_triodthysuf_e"/>
@@ -369289,10 +369212,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03039e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09427" sboTerm="SBO:0000627" id="MAR09427" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09427" sboTerm="SBO:0000627" id="R_MAR09427" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -369300,7 +369223,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09427">
+            <rdf:Description rdf:about="#R_MAR09427">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_trp__L_e"/>
@@ -369312,10 +369235,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03052e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03052e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09428" sboTerm="SBO:0000627" id="MAR09428" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09428" sboTerm="SBO:0000627" id="R_MAR09428" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -369323,7 +369246,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09428">
+            <rdf:Description rdf:about="#R_MAR09428">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_tststerone_e"/>
@@ -369334,10 +369257,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00734e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00734e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09429" sboTerm="SBO:0000627" id="MAR09429" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09429" sboTerm="SBO:0000627" id="R_MAR09429" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -369345,7 +369268,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09429">
+            <rdf:Description rdf:about="#R_MAR09429">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_tststerones_e"/>
@@ -369356,10 +369279,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02969e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02969e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09430" sboTerm="SBO:0000627" id="MAR09430" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09430" sboTerm="SBO:0000627" id="R_MAR09430" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -369367,7 +369290,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09430">
+            <rdf:Description rdf:about="#R_MAR09430">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_tsul_e"/>
@@ -369378,10 +369301,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02967e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02967e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09431" sboTerm="SBO:0000627" id="MAR09431" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09431" sboTerm="SBO:0000627" id="R_MAR09431" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -369389,7 +369312,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09431">
+            <rdf:Description rdf:about="#R_MAR09431">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_ttdca_e"/>
@@ -369400,10 +369323,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02968e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02968e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09432" sboTerm="SBO:0000627" id="MAR09432" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09432" sboTerm="SBO:0000627" id="R_MAR09432" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -369411,7 +369334,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09432">
+            <rdf:Description rdf:about="#R_MAR09432">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_txa2_e"/>
@@ -369422,10 +369345,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02991e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02991e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09433" sboTerm="SBO:0000627" id="MAR09433" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09433" sboTerm="SBO:0000627" id="R_MAR09433" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -369433,7 +369356,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09433">
+            <rdf:Description rdf:about="#R_MAR09433">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_Tyr_ggn_e"/>
@@ -369444,10 +369367,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02994e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02994e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09434" sboTerm="SBO:0000627" id="MAR09434" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09434" sboTerm="SBO:0000627" id="R_MAR09434" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -369455,7 +369378,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09434">
+            <rdf:Description rdf:about="#R_MAR09434">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_tyr__L_e"/>
@@ -369466,10 +369389,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03100e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03100e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09435" sboTerm="SBO:0000627" id="MAR09435" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09435" sboTerm="SBO:0000627" id="R_MAR09435" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -369477,7 +369400,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09435">
+            <rdf:Description rdf:about="#R_MAR09435">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_ura_e"/>
@@ -369489,10 +369412,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03106e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09436" sboTerm="SBO:0000627" id="MAR09436" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09436" sboTerm="SBO:0000627" id="R_MAR09436" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -369500,7 +369423,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09436">
+            <rdf:Description rdf:about="#R_MAR09436">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_urate_e"/>
@@ -369511,10 +369434,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03114e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03114e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09437" sboTerm="SBO:0000627" id="MAR09437" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09437" sboTerm="SBO:0000627" id="R_MAR09437" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -369522,7 +369445,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09437">
+            <rdf:Description rdf:about="#R_MAR09437">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_urea_e"/>
@@ -369533,10 +369456,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03118e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03118e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09438" sboTerm="SBO:0000627" id="MAR09438" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09438" sboTerm="SBO:0000627" id="R_MAR09438" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -369544,7 +369467,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09438">
+            <rdf:Description rdf:about="#R_MAR09438">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_utp_e"/>
@@ -369555,10 +369478,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03121e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03121e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09439" sboTerm="SBO:0000627" id="MAR09439" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09439" sboTerm="SBO:0000627" id="R_MAR09439" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -369566,7 +369489,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09439">
+            <rdf:Description rdf:about="#R_MAR09439">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_vacc_e"/>
@@ -369577,10 +369500,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03123e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03123e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09440" sboTerm="SBO:0000627" id="MAR09440" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09440" sboTerm="SBO:0000627" id="R_MAR09440" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -369588,7 +369511,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09440">
+            <rdf:Description rdf:about="#R_MAR09440">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_val__L_e"/>
@@ -369600,10 +369523,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03130e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03130e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09441" sboTerm="SBO:0000627" id="MAR09441" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09441" sboTerm="SBO:0000627" id="R_MAR09441" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -369611,7 +369534,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09441">
+            <rdf:Description rdf:about="#R_MAR09441">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_whddca_e"/>
@@ -369622,10 +369545,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03141e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03141e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09442" sboTerm="SBO:0000627" id="MAR09442" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09442" sboTerm="SBO:0000627" id="R_MAR09442" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -369633,7 +369556,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09442">
+            <rdf:Description rdf:about="#R_MAR09442">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_whhdca_e"/>
@@ -369644,10 +369567,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03142e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03142e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09443" sboTerm="SBO:0000627" id="MAR09443" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09443" sboTerm="SBO:0000627" id="R_MAR09443" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -369655,7 +369578,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09443">
+            <rdf:Description rdf:about="#R_MAR09443">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_whtststerone_e"/>
@@ -369666,10 +369589,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00325e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00325e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09444" sboTerm="SBO:0000627" id="MAR09444" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09444" sboTerm="SBO:0000627" id="R_MAR09444" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -369677,7 +369600,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09444">
+            <rdf:Description rdf:about="#R_MAR09444">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_xolest2_hs_e"/>
@@ -369688,10 +369611,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00371e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00371e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09445" sboTerm="SBO:0000627" id="MAR09445" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09445" sboTerm="SBO:0000627" id="R_MAR09445" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -369699,7 +369622,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09445">
+            <rdf:Description rdf:about="#R_MAR09445">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_whttdca_e"/>
@@ -369710,10 +369633,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00403e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00403e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09446" sboTerm="SBO:0000627" id="MAR09446" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09446" sboTerm="SBO:0000627" id="R_MAR09446" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -369721,7 +369644,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09446">
+            <rdf:Description rdf:about="#R_MAR09446">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_xolest_hs_e"/>
@@ -369732,10 +369655,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00432e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00432e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09447" sboTerm="SBO:0000627" id="MAR09447" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09447" sboTerm="SBO:0000627" id="R_MAR09447" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -369743,7 +369666,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09447">
+            <rdf:Description rdf:about="#R_MAR09447">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/EX_HC01444[e]"/>
@@ -369753,10 +369676,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01913e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01913e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09448" sboTerm="SBO:0000627" id="MAR09448" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09448" sboTerm="SBO:0000627" id="R_MAR09448" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -369764,7 +369687,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09448">
+            <rdf:Description rdf:about="#R_MAR09448">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/EX_CE2839[e]"/>
@@ -369774,10 +369697,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02445e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02445e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09449" sboTerm="SBO:0000627" id="MAR09449" name="Exchange of phenylacetylglycine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09449" sboTerm="SBO:0000627" id="R_MAR09449" name="Exchange of phenylacetylglycine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -369785,7 +369708,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09449">
+            <rdf:Description rdf:about="#R_MAR09449">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_pheacgly_e"/>
@@ -369797,10 +369720,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02723e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02723e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09450" sboTerm="SBO:0000627" id="MAR09450" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09450" sboTerm="SBO:0000627" id="R_MAR09450" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -369808,7 +369731,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#meta_MAR09450">
+            <rdf:Description rdf:about="#meta_R_MAR09450">
               <bqbiol:is>
                 <rdf:Bag/>
               </bqbiol:is>
@@ -369816,10 +369739,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03154e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03154e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09451" sboTerm="SBO:0000627" id="MAR09451" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09451" sboTerm="SBO:0000627" id="R_MAR09451" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -369827,7 +369750,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09451">
+            <rdf:Description rdf:about="#R_MAR09451">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/EX_itacon[e]"/>
@@ -369837,10 +369760,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02191e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02191e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09452" sboTerm="SBO:0000627" id="MAR09452" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09452" sboTerm="SBO:0000627" id="R_MAR09452" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -369848,7 +369771,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09452">
+            <rdf:Description rdf:about="#R_MAR09452">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/EX_estriol[e]"/>
@@ -369858,10 +369781,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01788e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01788e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09453" sboTerm="SBO:0000627" id="MAR09453" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09453" sboTerm="SBO:0000627" id="R_MAR09453" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -369869,7 +369792,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09453">
+            <rdf:Description rdf:about="#R_MAR09453">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/EX_ahandrostan[e]"/>
@@ -369879,10 +369802,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01800e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01800e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09454" sboTerm="SBO:0000627" id="MAR09454" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09454" sboTerm="SBO:0000627" id="R_MAR09454" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -369890,7 +369813,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09454">
+            <rdf:Description rdf:about="#R_MAR09454">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/EX_orn_D[e]"/>
@@ -369900,10 +369823,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01740e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01740e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09455" sboTerm="SBO:0000627" id="MAR09455" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09455" sboTerm="SBO:0000627" id="R_MAR09455" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -369911,7 +369834,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09455">
+            <rdf:Description rdf:about="#R_MAR09455">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/EX_arg_D[e]"/>
@@ -369921,10 +369844,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01640e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01640e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09456" sboTerm="SBO:0000627" id="MAR09456" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09456" sboTerm="SBO:0000627" id="R_MAR09456" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -369932,7 +369855,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#meta_MAR09456">
+            <rdf:Description rdf:about="#meta_R_MAR09456">
               <bqbiol:is>
                 <rdf:Bag/>
               </bqbiol:is>
@@ -369940,10 +369863,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01286e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01286e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09457" sboTerm="SBO:0000627" id="MAR09457" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09457" sboTerm="SBO:0000627" id="R_MAR09457" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -369951,7 +369874,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09457">
+            <rdf:Description rdf:about="#R_MAR09457">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/EX_adpman[e]"/>
@@ -369961,10 +369884,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01287e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01287e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09458" sboTerm="SBO:0000627" id="MAR09458" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09458" sboTerm="SBO:0000627" id="R_MAR09458" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -369972,7 +369895,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09458">
+            <rdf:Description rdf:about="#R_MAR09458">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/EX_rbl_D[e]"/>
@@ -369982,10 +369905,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01743e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01743e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09460" sboTerm="SBO:0000627" id="MAR09460" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09460" sboTerm="SBO:0000627" id="R_MAR09460" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -369993,7 +369916,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09460">
+            <rdf:Description rdf:about="#R_MAR09460">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/EX_crtn[e]"/>
@@ -370003,10 +369926,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01621e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01621e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09461" sboTerm="SBO:0000627" id="MAR09461" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09461" sboTerm="SBO:0000627" id="R_MAR09461" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -370014,7 +369937,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09461">
+            <rdf:Description rdf:about="#R_MAR09461">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/EX_M01966[e]"/>
@@ -370024,10 +369947,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01966e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01966e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09462" sboTerm="SBO:0000627" id="MAR09462" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09462" sboTerm="SBO:0000627" id="R_MAR09462" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -370035,7 +369958,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09462">
+            <rdf:Description rdf:about="#R_MAR09462">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/EX_M02155[e]"/>
@@ -370045,10 +369968,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02155e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02155e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09463" sboTerm="SBO:0000627" id="MAR09463" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09463" sboTerm="SBO:0000627" id="R_MAR09463" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -370056,7 +369979,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09463">
+            <rdf:Description rdf:about="#R_MAR09463">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/EX_M01989[e]"/>
@@ -370066,10 +369989,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01989e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01989e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09681" sboTerm="SBO:0000627" id="MAR09681" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09681" sboTerm="SBO:0000627" id="R_MAR09681" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -370077,7 +370000,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09681">
+            <rdf:Description rdf:about="#R_MAR09681">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/EX_idour[e]"/>
@@ -370087,10 +370010,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02384e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02384e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09682" sboTerm="SBO:0000627" id="MAR09682" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09682" sboTerm="SBO:0000627" id="R_MAR09682" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -370098,7 +370021,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09682">
+            <rdf:Description rdf:about="#R_MAR09682">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/EX_HC01104[e]"/>
@@ -370108,10 +370031,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01020e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01020e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09683" sboTerm="SBO:0000627" id="MAR09683" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09683" sboTerm="SBO:0000627" id="R_MAR09683" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -370119,7 +370042,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09683">
+            <rdf:Description rdf:about="#R_MAR09683">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/EX_M01111[e]"/>
@@ -370129,10 +370052,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01111e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01111e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09684" sboTerm="SBO:0000627" id="MAR09684" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09684" sboTerm="SBO:0000627" id="R_MAR09684" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -370140,7 +370063,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09684">
+            <rdf:Description rdf:about="#R_MAR09684">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/EX_agm[e]"/>
@@ -370150,10 +370073,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01303e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01303e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09685" sboTerm="SBO:0000627" id="MAR09685" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09685" sboTerm="SBO:0000627" id="R_MAR09685" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -370161,7 +370084,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09685">
+            <rdf:Description rdf:about="#R_MAR09685">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/EX_sbt_D[e]"/>
@@ -370171,10 +370094,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01682e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01682e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09686" sboTerm="SBO:0000627" id="MAR09686" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09686" sboTerm="SBO:0000627" id="R_MAR09686" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -370182,7 +370105,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09686">
+            <rdf:Description rdf:about="#R_MAR09686">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/EX_M01870[e]"/>
@@ -370192,10 +370115,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01870e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01870e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09687" sboTerm="SBO:0000627" id="MAR09687" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09687" sboTerm="SBO:0000627" id="R_MAR09687" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -370203,7 +370126,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09687">
+            <rdf:Description rdf:about="#R_MAR09687">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/EX_M01872[e]"/>
@@ -370213,10 +370136,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01872e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01872e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09688" sboTerm="SBO:0000627" id="MAR09688" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09688" sboTerm="SBO:0000627" id="R_MAR09688" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -370224,7 +370147,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#meta_MAR09688">
+            <rdf:Description rdf:about="#meta_R_MAR09688">
               <bqbiol:is>
                 <rdf:Bag/>
               </bqbiol:is>
@@ -370232,10 +370155,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01887e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01887e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09689" sboTerm="SBO:0000627" id="MAR09689" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09689" sboTerm="SBO:0000627" id="R_MAR09689" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -370243,7 +370166,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09689">
+            <rdf:Description rdf:about="#R_MAR09689">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/EX_acmana[e]"/>
@@ -370253,10 +370176,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02524e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02524e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09690" sboTerm="SBO:0000627" id="MAR09690" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09690" sboTerm="SBO:0000627" id="R_MAR09690" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -370264,7 +370187,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09690">
+            <rdf:Description rdf:about="#R_MAR09690">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/EX_orot[e]"/>
@@ -370274,10 +370197,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02659e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02659e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09691" sboTerm="SBO:0000627" id="MAR09691" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09691" sboTerm="SBO:0000627" id="R_MAR09691" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -370285,7 +370208,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09691">
+            <rdf:Description rdf:about="#R_MAR09691">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/EX_pydx5p[e]"/>
@@ -370295,10 +370218,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02814e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02814e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09692" sboTerm="SBO:0000627" id="MAR09692" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09692" sboTerm="SBO:0000627" id="R_MAR09692" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -370306,7 +370229,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09692">
+            <rdf:Description rdf:about="#R_MAR09692">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/EX_CE1936[e]"/>
@@ -370316,10 +370239,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02924e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02924e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09693" sboTerm="SBO:0000627" id="MAR09693" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09693" sboTerm="SBO:0000627" id="R_MAR09693" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -370327,7 +370250,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09693">
+            <rdf:Description rdf:about="#R_MAR09693">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/EX_C02470[e]"/>
@@ -370337,10 +370260,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03151e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03151e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09694" sboTerm="SBO:0000627" id="MAR09694" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09694" sboTerm="SBO:0000627" id="R_MAR09694" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -370348,7 +370271,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09694">
+            <rdf:Description rdf:about="#R_MAR09694">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/EX_homoval[e]"/>
@@ -370358,10 +370281,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02137e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02137e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09695" sboTerm="SBO:0000627" id="MAR09695" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09695" sboTerm="SBO:0000627" id="R_MAR09695" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -370369,7 +370292,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#meta_MAR09695">
+            <rdf:Description rdf:about="#meta_R_MAR09695">
               <bqbiol:is>
                 <rdf:Bag/>
               </bqbiol:is>
@@ -370377,10 +370300,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01874e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01874e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09696" sboTerm="SBO:0000627" id="MAR09696" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09696" sboTerm="SBO:0000627" id="R_MAR09696" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -370388,7 +370311,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09696">
+            <rdf:Description rdf:about="#R_MAR09696">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/EX_M01881[e]"/>
@@ -370398,10 +370321,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01881e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01881e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09697" sboTerm="SBO:0000627" id="MAR09697" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09697" sboTerm="SBO:0000627" id="R_MAR09697" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -370409,7 +370332,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#meta_MAR09697">
+            <rdf:Description rdf:about="#meta_R_MAR09697">
               <bqbiol:is>
                 <rdf:Bag/>
               </bqbiol:is>
@@ -370417,10 +370340,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01883e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01883e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09698" sboTerm="SBO:0000627" id="MAR09698" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09698" sboTerm="SBO:0000627" id="R_MAR09698" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -370428,7 +370351,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09698">
+            <rdf:Description rdf:about="#R_MAR09698">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/EX_galfucgalacglcgal14acglcgalgluside_hs[e]"/>
@@ -370438,10 +370361,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01884e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01884e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09699" sboTerm="SBO:0000627" id="MAR09699" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09699" sboTerm="SBO:0000627" id="R_MAR09699" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -370449,7 +370372,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09699">
+            <rdf:Description rdf:about="#R_MAR09699">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/EX_M03131[e]"/>
@@ -370459,10 +370382,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03131e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03131e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09700" sboTerm="SBO:0000627" id="MAR09700" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09700" sboTerm="SBO:0000627" id="R_MAR09700" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -370470,7 +370393,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09700">
+            <rdf:Description rdf:about="#R_MAR09700">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/EX_n5m2masn[e]"/>
@@ -370480,10 +370403,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02516e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02516e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09701" sboTerm="SBO:0000627" id="MAR09701" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09701" sboTerm="SBO:0000627" id="R_MAR09701" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -370491,7 +370414,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09701">
+            <rdf:Description rdf:about="#R_MAR09701">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/EX_C05769[e]"/>
@@ -370501,10 +370424,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01603e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01603e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09702" sboTerm="SBO:0000627" id="MAR09702" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09702" sboTerm="SBO:0000627" id="R_MAR09702" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -370512,7 +370435,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09702">
+            <rdf:Description rdf:about="#R_MAR09702">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/EX_C05770[e]"/>
@@ -370522,10 +370445,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01604e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01604e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09703" sboTerm="SBO:0000627" id="MAR09703" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09703" sboTerm="SBO:0000627" id="R_MAR09703" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -370533,7 +370456,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09703">
+            <rdf:Description rdf:about="#R_MAR09703">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/EX_gpi_sig[e]"/>
@@ -370543,10 +370466,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02022e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02022e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09704" sboTerm="SBO:0000627" id="MAR09704" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09704" sboTerm="SBO:0000627" id="R_MAR09704" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -370554,7 +370477,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#meta_MAR09704">
+            <rdf:Description rdf:about="#meta_R_MAR09704">
               <bqbiol:is>
                 <rdf:Bag/>
               </bqbiol:is>
@@ -370562,10 +370485,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01687e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01687e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09705" sboTerm="SBO:0000627" id="MAR09705" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09705" sboTerm="SBO:0000627" id="R_MAR09705" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -370573,7 +370496,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#meta_MAR09705">
+            <rdf:Description rdf:about="#meta_R_MAR09705">
               <bqbiol:is>
                 <rdf:Bag/>
               </bqbiol:is>
@@ -370581,10 +370504,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01665e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01665e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09706" sboTerm="SBO:0000627" id="MAR09706" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09706" sboTerm="SBO:0000627" id="R_MAR09706" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -370592,7 +370515,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09706">
+            <rdf:Description rdf:about="#R_MAR09706">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/EX_gncore2[e]"/>
@@ -370602,10 +370525,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01955e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01955e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09707" sboTerm="SBO:0000627" id="MAR09707" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09707" sboTerm="SBO:0000627" id="R_MAR09707" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -370613,7 +370536,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09707">
+            <rdf:Description rdf:about="#R_MAR09707">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/EX_kdn[e]"/>
@@ -370623,10 +370546,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00771e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00771e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09708" sboTerm="SBO:0000627" id="MAR09708" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09708" sboTerm="SBO:0000627" id="R_MAR09708" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -370634,7 +370557,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09708">
+            <rdf:Description rdf:about="#R_MAR09708">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/EX_M03161[e]"/>
@@ -370644,10 +370567,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02458e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02458e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09709" sboTerm="SBO:0000627" id="MAR09709" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09709" sboTerm="SBO:0000627" id="R_MAR09709" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -370655,7 +370578,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09709">
+            <rdf:Description rdf:about="#R_MAR09709">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/EX_core5[e]"/>
@@ -370665,10 +370588,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01610e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01610e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09710" sboTerm="SBO:0000627" id="MAR09710" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09710" sboTerm="SBO:0000627" id="R_MAR09710" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -370676,7 +370599,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09710">
+            <rdf:Description rdf:about="#R_MAR09710">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/EX_core7[e]"/>
@@ -370686,10 +370609,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01612e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01612e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09711" sboTerm="SBO:0000627" id="MAR09711" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09711" sboTerm="SBO:0000627" id="R_MAR09711" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -370697,7 +370620,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09711">
+            <rdf:Description rdf:about="#R_MAR09711">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/EX_core8[e]"/>
@@ -370707,10 +370630,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01613e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01613e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09712" sboTerm="SBO:0000627" id="MAR09712" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09712" sboTerm="SBO:0000627" id="R_MAR09712" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -370718,7 +370641,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09712">
+            <rdf:Description rdf:about="#R_MAR09712">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/sink_xolest2_hs[l]"/>
@@ -370728,10 +370651,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02462e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02462e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09713" sboTerm="SBO:0000627" id="MAR09713" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09713" sboTerm="SBO:0000627" id="R_MAR09713" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -370739,7 +370662,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09713">
+            <rdf:Description rdf:about="#R_MAR09713">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/EX_hretn[e]"/>
@@ -370749,10 +370672,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01006e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01006e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09714" sboTerm="SBO:0000627" id="MAR09714" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09714" sboTerm="SBO:0000627" id="R_MAR09714" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -370760,7 +370683,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09714">
+            <rdf:Description rdf:about="#R_MAR09714">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/EX_m3gacpail_prot_hs[e]"/>
@@ -370770,10 +370693,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02434e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02434e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09715" sboTerm="SBO:0000627" id="MAR09715" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09715" sboTerm="SBO:0000627" id="R_MAR09715" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -370781,7 +370704,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09715">
+            <rdf:Description rdf:about="#R_MAR09715">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/EX_sprm[e]"/>
@@ -370791,10 +370714,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02926e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02926e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09721" sboTerm="SBO:0000627" id="MAR09721" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09721" sboTerm="SBO:0000627" id="R_MAR09721" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -370802,7 +370725,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09721">
+            <rdf:Description rdf:about="#R_MAR09721">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/EX_dolichol_L[e]"/>
@@ -370812,10 +370735,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01730e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01730e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09729" sboTerm="SBO:0000627" id="MAR09729" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09729" sboTerm="SBO:0000627" id="R_MAR09729" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -370823,7 +370746,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#meta_MAR09729">
+            <rdf:Description rdf:about="#meta_R_MAR09729">
               <bqbiol:is>
                 <rdf:Bag/>
               </bqbiol:is>
@@ -370831,10 +370754,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03161e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03161e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09730" sboTerm="SBO:0000627" id="MAR09730" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09730" sboTerm="SBO:0000627" id="R_MAR09730" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -370842,7 +370765,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09730">
+            <rdf:Description rdf:about="#R_MAR09730">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/EX_HC00001[e]"/>
@@ -370852,10 +370775,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01308e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01308e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09725" sboTerm="SBO:0000185" id="MAR09725" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09725" sboTerm="SBO:0000185" id="R_MAR09725" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -370863,7 +370786,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09725">
+            <rdf:Description rdf:about="#R_MAR09725">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_9725"/>
@@ -370873,15 +370796,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555n" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02554n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR00031" sboTerm="SBO:0000176" id="MAR00031" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00031" sboTerm="SBO:0000176" id="R_MAR00031" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -370889,7 +370812,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00031">
+            <rdf:Description rdf:about="#R_MAR00031">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_0031"/>
@@ -370899,23 +370822,23 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00240c" stoichiometry="0.19" constant="true"/>
-          <speciesReference species="MAM00511c" stoichiometry="0.0014" constant="true"/>
-          <speciesReference species="MAM00560c" stoichiometry="0.0024" constant="true"/>
-          <speciesReference species="MAM00656c" stoichiometry="0.0006" constant="true"/>
-          <speciesReference species="MAM01450c" stoichiometry="0.005" constant="true"/>
-          <speciesReference species="MAM01451c" stoichiometry="0.34" constant="true"/>
-          <speciesReference species="MAM02629c" stoichiometry="0.0008" constant="true"/>
-          <speciesReference species="MAM02684c" stoichiometry="0.0092" constant="true"/>
-          <speciesReference species="MAM02685c" stoichiometry="0.0034" constant="true"/>
-          <speciesReference species="MAM02750c" stoichiometry="0.0016" constant="true"/>
-          <speciesReference species="MAM02808c" stoichiometry="0.0002" constant="true"/>
-          <speciesReference species="MAM02908c" stoichiometry="0.0004" constant="true"/>
-          <speciesReference species="MAM02958c" stoichiometry="0.44" constant="true"/>
-          <speciesReference species="MAM10005c" stoichiometry="0.005" constant="true"/>
+          <speciesReference species="M_MAM00240c" stoichiometry="0.19" constant="true"/>
+          <speciesReference species="M_MAM00511c" stoichiometry="0.0014" constant="true"/>
+          <speciesReference species="M_MAM00560c" stoichiometry="0.0024" constant="true"/>
+          <speciesReference species="M_MAM00656c" stoichiometry="0.0006" constant="true"/>
+          <speciesReference species="M_MAM01450c" stoichiometry="0.005" constant="true"/>
+          <speciesReference species="M_MAM01451c" stoichiometry="0.34" constant="true"/>
+          <speciesReference species="M_MAM02629c" stoichiometry="0.0008" constant="true"/>
+          <speciesReference species="M_MAM02684c" stoichiometry="0.0092" constant="true"/>
+          <speciesReference species="M_MAM02685c" stoichiometry="0.0034" constant="true"/>
+          <speciesReference species="M_MAM02750c" stoichiometry="0.0016" constant="true"/>
+          <speciesReference species="M_MAM02808c" stoichiometry="0.0002" constant="true"/>
+          <speciesReference species="M_MAM02908c" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM02958c" stoichiometry="0.44" constant="true"/>
+          <speciesReference species="M_MAM10005c" stoichiometry="0.005" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02392c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02392c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -370923,7 +370846,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00032" sboTerm="SBO:0000176" id="MAR00032" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00032" sboTerm="SBO:0000176" id="R_MAR00032" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -370931,7 +370854,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00032">
+            <rdf:Description rdf:about="#R_MAR00032">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_0032"/>
@@ -370941,26 +370864,26 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02392c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02392c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00240c" stoichiometry="0.19" constant="true"/>
-          <speciesReference species="MAM00511c" stoichiometry="0.0014" constant="true"/>
-          <speciesReference species="MAM00560c" stoichiometry="0.0024" constant="true"/>
-          <speciesReference species="MAM00656c" stoichiometry="0.0006" constant="true"/>
-          <speciesReference species="MAM01450c" stoichiometry="0.005" constant="true"/>
-          <speciesReference species="MAM01451c" stoichiometry="0.34" constant="true"/>
-          <speciesReference species="MAM02629c" stoichiometry="0.0008" constant="true"/>
-          <speciesReference species="MAM02684c" stoichiometry="0.0092" constant="true"/>
-          <speciesReference species="MAM02685c" stoichiometry="0.0034" constant="true"/>
-          <speciesReference species="MAM02750c" stoichiometry="0.0016" constant="true"/>
-          <speciesReference species="MAM02808c" stoichiometry="0.0002" constant="true"/>
-          <speciesReference species="MAM02908c" stoichiometry="0.0004" constant="true"/>
-          <speciesReference species="MAM02958c" stoichiometry="0.44" constant="true"/>
-          <speciesReference species="MAM10005c" stoichiometry="0.005" constant="true"/>
+          <speciesReference species="M_MAM00240c" stoichiometry="0.19" constant="true"/>
+          <speciesReference species="M_MAM00511c" stoichiometry="0.0014" constant="true"/>
+          <speciesReference species="M_MAM00560c" stoichiometry="0.0024" constant="true"/>
+          <speciesReference species="M_MAM00656c" stoichiometry="0.0006" constant="true"/>
+          <speciesReference species="M_MAM01450c" stoichiometry="0.005" constant="true"/>
+          <speciesReference species="M_MAM01451c" stoichiometry="0.34" constant="true"/>
+          <speciesReference species="M_MAM02629c" stoichiometry="0.0008" constant="true"/>
+          <speciesReference species="M_MAM02684c" stoichiometry="0.0092" constant="true"/>
+          <speciesReference species="M_MAM02685c" stoichiometry="0.0034" constant="true"/>
+          <speciesReference species="M_MAM02750c" stoichiometry="0.0016" constant="true"/>
+          <speciesReference species="M_MAM02808c" stoichiometry="0.0002" constant="true"/>
+          <speciesReference species="M_MAM02908c" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM02958c" stoichiometry="0.44" constant="true"/>
+          <speciesReference species="M_MAM10005c" stoichiometry="0.005" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR00021" sboTerm="SBO:0000629" id="MAR00021" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00021" sboTerm="SBO:0000629" id="R_MAR00021" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -370968,7 +370891,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00021">
+            <rdf:Description rdf:about="#R_MAR00021">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/biomass_components"/>
@@ -370978,44 +370901,44 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01307c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01365c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01369c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01370c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01450c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01451r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01589c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01628c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01721n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01722n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01974c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01975c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01986c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02125c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02184c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02360c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02392c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02426c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02471c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02724c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02733c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02750c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02770c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02847c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02896c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02908c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02993c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03089c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03101c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03135c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03161c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01602c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01307c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01365c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01369c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01370c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01451r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01589c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01628c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01721n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01722n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01974c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01975c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02125c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02184c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02360c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02392c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02426c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02471c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02724c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02733c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02750c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02770c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02847c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02896c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02908c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02993c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03089c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03101c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03135c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03161c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01602c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03970c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03970c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR00022" sboTerm="SBO:0000176" id="MAR00022" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00022" sboTerm="SBO:0000176" id="R_MAR00022" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -371023,7 +370946,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00022">
+            <rdf:Description rdf:about="#R_MAR00022">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/cofactors_vitamins"/>
@@ -371033,28 +370956,28 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00209c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01401c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01600m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01631m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01803c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02842c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02978c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02980c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03102m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03139c" stoichiometry="0.1" constant="true"/>
-          <speciesReference species="MAM03140c" stoichiometry="0.1" constant="true"/>
-          <speciesReference species="MAM03143c" stoichiometry="0.1" constant="true"/>
+          <speciesReference species="M_MAM00209c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01401c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01600m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01631m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01803c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02842c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02978c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02980c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03102m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03139c" stoichiometry="0.1" constant="true"/>
+          <speciesReference species="M_MAM03140c" stoichiometry="0.1" constant="true"/>
+          <speciesReference species="M_MAM03143c" stoichiometry="0.1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01602c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01602c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR00023" sboTerm="SBO:0000185" id="MAR00023" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00023" sboTerm="SBO:0000185" id="R_MAR00023" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -371062,7 +370985,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00023">
+            <rdf:Description rdf:about="#R_MAR00023">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/vitaminA"/>
@@ -371072,32 +370995,32 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00291c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00427c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00427r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01008c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01008r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01022c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01022r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01024c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01024r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01026r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01028c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01028r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01030c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01030r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01031c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01031r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01032c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01060c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01232c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02624c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00291c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00427c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00427r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01008c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01008r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01022c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01022r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01024c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01024r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01026r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01028c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01028r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01030c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01030r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01031c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01031r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01032c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01060c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01232c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02624c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03139c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03139c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR00033" sboTerm="SBO:0000185" id="MAR00033" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00033" sboTerm="SBO:0000185" id="R_MAR00033" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -371105,7 +371028,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00033">
+            <rdf:Description rdf:about="#R_MAR00033">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/vitaminD"/>
@@ -371115,16 +371038,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00611c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00611m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00622c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00622m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00611c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00611m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00622c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00622m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03140c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03140c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR00034" sboTerm="SBO:0000176" id="MAR00034" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00034" sboTerm="SBO:0000176" id="R_MAR00034" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -371132,7 +371055,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00034">
+            <rdf:Description rdf:about="#R_MAR00034">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/vitaminE"/>
@@ -371142,14 +371065,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00766c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01924c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00766c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01924c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03143c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03143c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR00035" sboTerm="SBO:0000176" id="MAR00035" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00035" sboTerm="SBO:0000176" id="R_MAR00035" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -371157,7 +371080,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00035">
+            <rdf:Description rdf:about="#R_MAR00035">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/xenobiotics"/>
@@ -371167,55 +371090,55 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00030c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00031c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00033c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00244c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00246c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00251c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00539c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00540c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00541c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00542c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00543c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00544c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00567c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00571c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00637c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00724c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00917c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00927c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00928c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00930c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00944c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00972c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01156c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01175c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01195c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01242c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01297c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01299c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01301c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01302c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01376c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01691c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01929c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02143c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02144c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02589c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02607c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02608c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02850c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02853c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02855c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03038c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03042c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00030c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00031c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00033c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00244c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00246c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00251c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00539c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00540c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00541c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00542c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00543c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00544c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00567c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00571c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00637c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00724c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00917c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00927c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00928c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00930c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00944c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00972c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01156c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01175c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01195c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01242c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01297c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01299c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01301c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01302c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01376c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01691c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01929c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02143c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02144c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02589c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02607c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02608c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02850c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02853c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02855c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03038c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03042c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM10002e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM10002e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR00036" sboTerm="SBO:0000185" id="MAR00036" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00036" sboTerm="SBO:0000185" id="R_MAR00036" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -371223,7 +371146,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00036">
+            <rdf:Description rdf:about="#R_MAR00036">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/arachidonates"/>
@@ -371233,167 +371156,167 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00005c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00013c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00014x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00029c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00254c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00254m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00254x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00270c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00270r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00274c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00274r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00276c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00277c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00278c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00280c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00282c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00284c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00284m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00284r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00293c" stoichiometry="1" constant="true"/>
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-          <speciesReference species="MAM00327r" stoichiometry="1" constant="true"/>
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-          <speciesReference species="MAM00336c" stoichiometry="1" constant="true"/>
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-          <speciesReference species="MAM00378c" stoichiometry="1" constant="true"/>
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-          <speciesReference species="MAM00383c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00384c" stoichiometry="1" constant="true"/>
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-          <speciesReference species="MAM00387r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00388c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00388x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00388r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00389c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00389x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00389r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00392c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00395c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00396c" stoichiometry="1" constant="true"/>
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-          <speciesReference species="MAM00414c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00424m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00425x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00426c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00428r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00430c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00590c" stoichiometry="1" constant="true"/>
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-          <speciesReference species="MAM00595r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00598c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00598r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00602c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00687m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00687x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01038n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01039x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01041n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01047c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01049c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01050c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01051c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01054r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01055c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01120c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01120r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01122c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01122r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01150c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01150m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01150x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01153c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01153m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01153x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01153r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01167c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01168r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01171c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01171m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01171x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01172c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01172m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01172x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01190c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01202c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01208c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01209r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01210c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01213c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01239c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02097c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02097x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02368c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02395n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02395x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02395r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02396x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02396r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02441c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02538c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02538n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02649m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02649x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02786r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02787n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02793r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02796r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02797c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02798c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02799c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02851c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02852c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02862c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02863c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02864c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03055c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03055x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03055r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03056c" stoichiometry="1" constant="true"/>
-        </listOfReactants>
-        <listOfProducts>
-          <speciesReference species="MAM10003e" stoichiometry="1" constant="true"/>
-        </listOfProducts>
-      </reaction>
-      <reaction metaid="MAR00037" sboTerm="SBO:0000185" id="MAR00037" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
-        <notes>
-          <body xmlns="http://www.w3.org/1999/xhtml">
-            <p>Confidence Level: 0</p>
-          </body>
-        </notes>
-        <annotation>
-          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00037">
+          <speciesReference species="M_MAM00005c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00013c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00014x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00029c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00254c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00254m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00254x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00270c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00270r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00274c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00274r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00276c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00277c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00278c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00280c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00282c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00284c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00284m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00284r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00293c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00297c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00298c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00304c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00306c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00308c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00318c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00318r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00319c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00320c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00321c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00322c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00323c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00323r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00324r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00327c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00327r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00328c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00328r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00333r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00334c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00336c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00338c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00340c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00352r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00354c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00364c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00366r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00376c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00378c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00382c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00383c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00384c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00386c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00386x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00386r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00387c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00387x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00387r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00388c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00388x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00388r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00389c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00389x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00389r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00392c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00395c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00396c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00398x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00414c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00424m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00425x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00426c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00428r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00430c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00590c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00595c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00595r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00598c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00598r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00602c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00687m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00687x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01038n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01039x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01041n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01047c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01049c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01050c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01051c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01054r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01055c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01120c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01120r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01122c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01122r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01150c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01150m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01150x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01153c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01153m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01153x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01153r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01167c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01168r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01171c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01171m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01171x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01172c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01172m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01172x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01190c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01202c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01208c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01209r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01210c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01213c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01239c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02097c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02097x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02368c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02395n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02395x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02395r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02396x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02396r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02441c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02538c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02538n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02649m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02649x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02786r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02787n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02793r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02796r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02797c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02798c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02799c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02851c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02852c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02862c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02863c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02864c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03055c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03055x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03055r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03056c" stoichiometry="1" constant="true"/>
+        </listOfReactants>
+        <listOfProducts>
+          <speciesReference species="M_MAM10003e" stoichiometry="1" constant="true"/>
+        </listOfProducts>
+      </reaction>
+      <reaction metaid="R_MAR00037" sboTerm="SBO:0000185" id="R_MAR00037" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+        <notes>
+          <body xmlns="http://www.w3.org/1999/xhtml">
+            <p>Confidence Level: 0</p>
+          </body>
+        </notes>
+        <annotation>
+          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+            <rdf:Description rdf:about="#R_MAR00037">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/steroids"/>
@@ -371403,63 +371326,63 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00400c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00400r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00432r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00604c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00624c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00641c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00641m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00641x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00641r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00642c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00642m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00642x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00642r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00644c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00645c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00649l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00649r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00651c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00651m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00651x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00651r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00652c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00652m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00652x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00652r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00659c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00660c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00660r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00747r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00759c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00828r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00830c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00925c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00927c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00945c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00947c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00949c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00987c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00987m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00987x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00987r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00988c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01001c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01001m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01001x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01001r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01011c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01012c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01792r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01794r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02469c" stoichiometry="1" constant="true"/>
-        </listOfReactants>
-        <listOfProducts>
-          <speciesReference species="MAM10001e" stoichiometry="1" constant="true"/>
-        </listOfProducts>
-      </reaction>
-      <reaction metaid="MAR00038" sboTerm="SBO:0000185" id="MAR00038" name="10-Formyltetrahydrofolate Mitochondrial Transport via Diffusion" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+          <speciesReference species="M_MAM00400c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00400r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00432r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00604c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00624c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00641c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00641m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00641x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00641r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00642c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00642m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00642x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00642r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00644c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00645c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00649l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00649r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00651c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00651m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00651x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00651r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00652c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00652m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00652x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00652r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00659c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00660c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00660r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00747r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00828r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00830c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00925c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00927c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00945c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00947c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00949c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00987c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00987m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00987x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00987r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00988c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01001c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01001m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01001x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01001r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01011c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01012c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01792r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01794r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02469c" stoichiometry="1" constant="true"/>
+        </listOfReactants>
+        <listOfProducts>
+          <speciesReference species="M_MAM10001e" stoichiometry="1" constant="true"/>
+        </listOfProducts>
+      </reaction>
+      <reaction metaid="R_MAR00038" sboTerm="SBO:0000185" id="R_MAR00038" name="10-Formyltetrahydrofolate Mitochondrial Transport via Diffusion" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -371468,7 +371391,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00038">
+            <rdf:Description rdf:about="#R_MAR00038">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/10FTHFtm"/>
@@ -371480,13 +371403,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00266c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00266c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00266m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00266m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR00040" sboTerm="SBO:0000176" id="MAR00040" name="3- (4-Hydroxyphenyl-)Lactate Formation" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00040" sboTerm="SBO:0000176" id="R_MAR00040" name="3- (4-Hydroxyphenyl-)Lactate Formation" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -371495,7 +371418,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00040">
+            <rdf:Description rdf:about="#R_MAR00040">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/34HPLFM"/>
@@ -371507,16 +371430,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01005m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01005m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02552m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01004m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01004m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR00041" sboTerm="SBO:0000176" id="MAR00041" name="Hydroxylation of 3-Decaprenyl-4-Hydroxybenzoate (NADH)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00041" sboTerm="SBO:0000176" id="R_MAR00041" name="Hydroxylation of 3-Decaprenyl-4-Hydroxybenzoate (NADH)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -371525,7 +371448,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00041">
+            <rdf:Description rdf:about="#R_MAR00041">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/3DPHBH1"/>
@@ -371537,18 +371460,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00767m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00767m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00725m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00725m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR00042" sboTerm="SBO:0000176" id="MAR00042" name="3-Hydroxyisobutyryl Coenzyme A Hydrolase, Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00042" sboTerm="SBO:0000176" id="R_MAR00042" name="3-Hydroxyisobutyryl Coenzyme A Hydrolase, Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -371557,7 +371480,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00042">
+            <rdf:Description rdf:about="#R_MAR00042">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.2.4"/>
@@ -371570,16 +371493,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03226m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03226m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00784m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00784m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR00043" sboTerm="SBO:0000176" id="MAR00043" name="3-Hydroxyisobutyryl-Coenzyme A Hydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00043" sboTerm="SBO:0000176" id="R_MAR00043" name="3-Hydroxyisobutyryl-Coenzyme A Hydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -371588,7 +371511,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00043">
+            <rdf:Description rdf:about="#R_MAR00043">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.2.4"/>
@@ -371601,19 +371524,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00799c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00799c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02142c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02142c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG5044"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00044" sboTerm="SBO:0000176" id="MAR00044" name="3-Hydroxypropionate Dehydrogenase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00044" sboTerm="SBO:0000176" id="R_MAR00044" name="3-Hydroxypropionate Dehydrogenase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -371622,7 +371545,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00044">
+            <rdf:Description rdf:about="#R_MAR00044">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.59"/>
@@ -371635,16 +371558,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02552c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02142c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02142c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00900c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00900c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR00045" sboTerm="SBO:0000185" id="MAR00045" name="3-Methyl-2-Oxobutanoate Mitochondrial Transport via Proton Symport" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00045" sboTerm="SBO:0000185" id="R_MAR00045" name="3-Methyl-2-Oxobutanoate Mitochondrial Transport via Proton Symport" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -371653,7 +371576,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00045">
+            <rdf:Description rdf:about="#R_MAR00045">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/3MOBt2im"/>
@@ -371665,15 +371588,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00824c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00824c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00824m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00824m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR00046" sboTerm="SBO:0000176" id="MAR00046" name="3&apos;-Nucleotidase (AMP), Lysosomal" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00046" sboTerm="SBO:0000176" id="R_MAR00046" name="3&apos;-Nucleotidase (AMP), Lysosomal" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -371681,7 +371604,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00046">
+            <rdf:Description rdf:about="#R_MAR00046">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.3.2"/>
@@ -371694,12 +371617,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03200l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03200l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01280l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01280l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -371708,7 +371631,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00047" sboTerm="SBO:0000176" id="MAR00047" name="4-Hydroxybenzoyl Coenzyme A Formation" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00047" sboTerm="SBO:0000176" id="R_MAR00047" name="4-Hydroxybenzoyl Coenzyme A Formation" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -371717,7 +371640,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00047">
+            <rdf:Description rdf:about="#R_MAR00047">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/4HBZCOAFm"/>
@@ -371729,19 +371652,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00982m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00982m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00996m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00996m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR00048" sboTerm="SBO:0000176" id="MAR00048" name="4-Hydroxybenzoate Formation" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00048" sboTerm="SBO:0000176" id="R_MAR00048" name="4-Hydroxybenzoate Formation" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -371750,7 +371673,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00048">
+            <rdf:Description rdf:about="#R_MAR00048">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/4HBZFm"/>
@@ -371764,16 +371687,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00996m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00996m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00995m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00995m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR00049" sboTerm="SBO:0000185" id="MAR00049" name="4-Methylpentanal Transport, Endoplasmatic Reticulum" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00049" sboTerm="SBO:0000185" id="R_MAR00049" name="4-Methylpentanal Transport, Endoplasmatic Reticulum" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -371782,7 +371705,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00049">
+            <rdf:Description rdf:about="#R_MAR00049">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/4MPTNLtr"/>
@@ -371794,13 +371717,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02182c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02182c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02182r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02182r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR00050" sboTerm="SBO:0000185" id="MAR00050" name="5-Formyltetrahydrofolate Transport via Anion Exchange" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00050" sboTerm="SBO:0000185" id="R_MAR00050" name="5-Formyltetrahydrofolate Transport via Anion Exchange" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -371809,7 +371732,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00050">
+            <rdf:Description rdf:about="#R_MAR00050">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/5FTHFt2"/>
@@ -371821,12 +371744,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01100e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01100e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01100c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01100c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -371835,7 +371758,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00051" sboTerm="SBO:0000176" id="MAR00051" name="5-Hydroxyindoleacetaldehyde:NAD+ Oxidoreductase, Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00051" sboTerm="SBO:0000176" id="R_MAR00051" name="5-Hydroxyindoleacetaldehyde:NAD+ Oxidoreductase, Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -371844,7 +371767,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00051">
+            <rdf:Description rdf:about="#R_MAR00051">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.5.1.12"/>
@@ -371857,14 +371780,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01102m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01102m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039m" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01103m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01103m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -371873,7 +371796,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00052" sboTerm="SBO:0000185" id="MAR00052" name="5-Hydroxy-L-Tryptophan Secretion via Secretory Vesicle (ATP Driven)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00052" sboTerm="SBO:0000185" id="R_MAR00052" name="5-Hydroxy-L-Tryptophan Secretion via Secretory Vesicle (ATP Driven)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -371882,7 +371805,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00052">
+            <rdf:Description rdf:about="#R_MAR00052">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.13.11.52"/>
@@ -371895,21 +371818,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01107c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01107c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01107e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01107e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Vmat"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00053" sboTerm="SBO:0000185" id="MAR00053" name="5-Methyltetrahydrofolate Transport via Anion Exchange" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00053" sboTerm="SBO:0000185" id="R_MAR00053" name="5-Methyltetrahydrofolate Transport via Anion Exchange" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -371918,7 +371841,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00053">
+            <rdf:Description rdf:about="#R_MAR00053">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/5MTHFt2"/>
@@ -371930,12 +371853,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01115e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01115e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01115c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01115c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -371944,7 +371867,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00054" sboTerm="SBO:0000185" id="MAR00054" name="Cholesterol Precursor Intracellular Transport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00054" sboTerm="SBO:0000185" id="R_MAR00054" name="Cholesterol Precursor Intracellular Transport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -371952,7 +371875,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00054">
+            <rdf:Description rdf:about="#R_MAR00054">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/7DHCHSTEROLtr"/>
@@ -371964,13 +371887,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02805r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02805r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02805c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02805c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR00056" sboTerm="SBO:0000185" id="MAR00056" name="Acetoacetate Intracellular Transport Unknown Mechanism" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00056" sboTerm="SBO:0000185" id="R_MAR00056" name="Acetoacetate Intracellular Transport Unknown Mechanism" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -371978,7 +371901,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00056">
+            <rdf:Description rdf:about="#R_MAR00056">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.16"/>
@@ -371993,13 +371916,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01253c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01253c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01253x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01253x" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR00057" sboTerm="SBO:0000185" id="MAR00057" name="Acetyl Coenzyme A Transport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00057" sboTerm="SBO:0000185" id="R_MAR00057" name="Acetyl Coenzyme A Transport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -372007,7 +371930,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00057">
+            <rdf:Description rdf:about="#R_MAR00057">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ACCOAtr"/>
@@ -372019,16 +371942,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01261c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG9706"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00058" sboTerm="SBO:0000185" id="MAR00058" name="Acetylcholine Secretion via Secretory Vesicle (ATP Driven)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00058" sboTerm="SBO:0000185" id="R_MAR00058" name="Acetylcholine Secretion via Secretory Vesicle (ATP Driven)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -372037,7 +371960,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00058">
+            <rdf:Description rdf:about="#R_MAR00058">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ACHVESSEC"/>
@@ -372049,21 +371972,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01260c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01260c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01260e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01260e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="VAChT"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00059" sboTerm="SBO:0000176" id="MAR00059" name="Acyl-Coenzyme A Oxidase 2, Branched Chain" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00059" sboTerm="SBO:0000176" id="R_MAR00059" name="Acyl-Coenzyme A Oxidase 2, Branched Chain" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -372072,7 +371995,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00059">
+            <rdf:Description rdf:about="#R_MAR00059">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.3.6"/>
@@ -372085,19 +372008,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00755x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01803x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630x" stoichiometry="0.5" constant="true"/>
+          <speciesReference species="M_MAM00755x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01803x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630x" stoichiometry="0.5" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00037x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01802x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00037x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01802x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="ACOX1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00060" sboTerm="SBO:0000185" id="MAR00060" name="O-Acetylcarnintine Transport into Mitochondria via Diffusion" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00060" sboTerm="SBO:0000185" id="R_MAR00060" name="O-Acetylcarnintine Transport into Mitochondria via Diffusion" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -372106,7 +372029,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00060">
+            <rdf:Description rdf:about="#R_MAR00060">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.3.2"/>
@@ -372119,16 +372042,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02634c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02634c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02634m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02634m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="colt"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00061" sboTerm="SBO:0000185" id="MAR00061" name="Acetate Mitochondrial Transport via Proton Symport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00061" sboTerm="SBO:0000185" id="R_MAR00061" name="Acetate Mitochondrial Transport via Proton Symport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -372137,7 +372060,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00061">
+            <rdf:Description rdf:about="#R_MAR00061">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.1.1.4"/>
@@ -372150,15 +372073,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01252c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01252c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01252m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01252m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR00062" sboTerm="SBO:0000176" id="MAR00062" name="ADPribose Diphosphatase, Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00062" sboTerm="SBO:0000176" id="R_MAR00062" name="ADPribose Diphosphatase, Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -372167,7 +372090,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00062">
+            <rdf:Description rdf:about="#R_MAR00062">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.6.1.13"/>
@@ -372180,19 +372103,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01288m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01288m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01334m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02845m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02845m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG4098"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00063" sboTerm="SBO:0000185" id="MAR00063" name="Fatty Acid Intracellular Transport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00063" sboTerm="SBO:0000185" id="R_MAR00063" name="Fatty Acid Intracellular Transport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -372200,7 +372123,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00063">
+            <rdf:Description rdf:about="#R_MAR00063">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ADRNCOAtx"/>
@@ -372212,13 +372135,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00119c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00119c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00119x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00119x" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR00064" sboTerm="SBO:0000185" id="MAR00064" name="Transport into the Mitochondria (Carnitine)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00064" sboTerm="SBO:0000185" id="R_MAR00064" name="Transport into the Mitochondria (Carnitine)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -372226,7 +372149,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00064">
+            <rdf:Description rdf:about="#R_MAR00064">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ADRNCRNt"/>
@@ -372238,16 +372161,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02636c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02636c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02636m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02636m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="colt"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00065" sboTerm="SBO:0000185" id="MAR00065" name="Adrenaline Secretion via Secretory Vesicle (ATP Driven)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00065" sboTerm="SBO:0000185" id="R_MAR00065" name="Adrenaline Secretion via Secretory Vesicle (ATP Driven)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -372256,7 +372179,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00065">
+            <rdf:Description rdf:about="#R_MAR00065">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ADRNLPVESSEC"/>
@@ -372268,21 +372191,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01290c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01290c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01290e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01290e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Vmat"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00066" sboTerm="SBO:0000185" id="MAR00066" name="L-Alanine Reversible Transport via Proton Symport, Lysosomal" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00066" sboTerm="SBO:0000185" id="R_MAR00066" name="L-Alanine Reversible Transport via Proton Symport, Lysosomal" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -372291,7 +372214,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00066">
+            <rdf:Description rdf:about="#R_MAR00066">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ALAt2rL"/>
@@ -372303,18 +372226,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01307l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01307l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01307c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01307c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG13384"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00067" sboTerm="SBO:0000176" id="MAR00067" name="Aldehyde Dehydrogenase (Pristanal, NAD)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00067" sboTerm="SBO:0000176" id="R_MAR00067" name="Aldehyde Dehydrogenase (Pristanal, NAD)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -372323,7 +372246,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00067">
+            <rdf:Description rdf:about="#R_MAR00067">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ALDD21"/>
@@ -372335,17 +372258,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00564c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00564c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02553c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02766c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02553c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02766c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR00068" sboTerm="SBO:0000176" id="MAR00068" name="Alkaline Phosphatase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00068" sboTerm="SBO:0000176" id="R_MAR00068" name="Alkaline Phosphatase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -372354,7 +372277,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00068">
+            <rdf:Description rdf:about="#R_MAR00068">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.3.1"/>
@@ -372367,12 +372290,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01690c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01690c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01984c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01984c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -372385,7 +372308,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00069" sboTerm="SBO:0000176" id="MAR00069" name="Alpha-Methylacyl Coenzyme A Racemase (Reductase)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00069" sboTerm="SBO:0000176" id="R_MAR00069" name="Alpha-Methylacyl Coenzyme A Racemase (Reductase)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -372393,7 +372316,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00069">
+            <rdf:Description rdf:about="#R_MAR00069">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/5.1.99.4"/>
@@ -372406,18 +372329,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00614x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630x" stoichiometry="0.5" constant="true"/>
+          <speciesReference species="M_MAM00614x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630x" stoichiometry="0.5" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00755x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00755x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Amacr"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00070" sboTerm="SBO:0000176" id="MAR00070" name="Alpha-Methylacyl Coenzyme A Racemase (Reductase)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00070" sboTerm="SBO:0000176" id="R_MAR00070" name="Alpha-Methylacyl Coenzyme A Racemase (Reductase)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -372425,7 +372348,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00070">
+            <rdf:Description rdf:about="#R_MAR00070">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/5.1.99.4"/>
@@ -372438,18 +372361,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00614r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630r" stoichiometry="0.5" constant="true"/>
+          <speciesReference species="M_MAM00614r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630r" stoichiometry="0.5" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00755r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00755r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Amacr"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00071" sboTerm="SBO:0000176" id="MAR00071" name="Alpha-Methylacyl Coenzyme A Racemase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00071" sboTerm="SBO:0000176" id="R_MAR00071" name="Alpha-Methylacyl Coenzyme A Racemase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -372457,7 +372380,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00071">
+            <rdf:Description rdf:about="#R_MAR00071">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/5.1.99.4"/>
@@ -372470,16 +372393,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00616r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00616r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00618r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00618r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Amacr"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00072" sboTerm="SBO:0000176" id="MAR00072" name="Alpha-Amylase, Extracellular (Glygn2 -&gt; Glygn4)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00072" sboTerm="SBO:0000176" id="R_MAR00072" name="Alpha-Amylase, Extracellular (Glygn2 -&gt; Glygn4)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -372487,7 +372410,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00072">
+            <rdf:Description rdf:about="#R_MAR00072">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.2.1.1"/>
@@ -372500,12 +372423,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040e" stoichiometry="8" constant="true"/>
-          <speciesReference species="MAM01992e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040e" stoichiometry="8" constant="true"/>
+          <speciesReference species="M_MAM01992e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01965e" stoichiometry="8" constant="true"/>
-          <speciesReference species="MAM03622e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01965e" stoichiometry="8" constant="true"/>
+          <speciesReference species="M_MAM03622e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -372513,7 +372436,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00073" sboTerm="SBO:0000176" id="MAR00073" name="Apocarboxylase Formation, Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00073" sboTerm="SBO:0000176" id="R_MAR00073" name="Apocarboxylase Formation, Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -372521,7 +372444,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00073">
+            <rdf:Description rdf:about="#R_MAR00073">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/APOCFm"/>
@@ -372533,16 +372456,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02426m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00185m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02426m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00185m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01356m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01356m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR00074" sboTerm="SBO:0000176" id="MAR00074" name="Proteolysis of ApoC-Lys-Biotin, Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00074" sboTerm="SBO:0000176" id="R_MAR00074" name="Proteolysis of ApoC-Lys-Biotin, Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -372550,7 +372473,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00074">
+            <rdf:Description rdf:about="#R_MAR00074">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/APOC_LYS_BTNPm"/>
@@ -372562,15 +372485,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01357m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01357m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00185m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01400m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00185m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01400m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR00075" sboTerm="SBO:0000185" id="MAR00075" name="Fatty Acid Intracellular Transport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00075" sboTerm="SBO:0000185" id="R_MAR00075" name="Fatty Acid Intracellular Transport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -372578,7 +372501,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00075">
+            <rdf:Description rdf:about="#R_MAR00075">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ARACHCOAtx"/>
@@ -372590,13 +372513,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01773c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01773c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01773x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01773x" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR00076" sboTerm="SBO:0000185" id="MAR00076" name="Transport into the Mitochondria (Carnitine)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00076" sboTerm="SBO:0000185" id="R_MAR00076" name="Transport into the Mitochondria (Carnitine)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -372604,7 +372527,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00076">
+            <rdf:Description rdf:about="#R_MAR00076">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ARACHCRNt"/>
@@ -372616,16 +372539,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01772c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01772c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01772m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01772m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="colt"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00077" sboTerm="SBO:0000185" id="MAR00077" name="Fatty Acid Intracellular Transport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00077" sboTerm="SBO:0000185" id="R_MAR00077" name="Fatty Acid Intracellular Transport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -372633,7 +372556,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00077">
+            <rdf:Description rdf:about="#R_MAR00077">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.21"/>
@@ -372646,13 +372569,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01364c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01364c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01364x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01364x" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR00078" sboTerm="SBO:0000185" id="MAR00078" name="Intracellular Transport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00078" sboTerm="SBO:0000185" id="R_MAR00078" name="Intracellular Transport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -372660,7 +372583,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00078">
+            <rdf:Description rdf:about="#R_MAR00078">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ARACHDtr"/>
@@ -372672,46 +372595,47 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01362c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01362c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01362r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01362r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR00079" sboTerm="SBO:0000185" id="MAR00079" name="Arginine Mitochondrial Transport via Ornithine Carrier" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00079" sboTerm="SBO:0000185" id="R_MAR00079" name="Arginine Mitochondrial Transport via Ornithine Carrier" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
-            <p>AUTHORS: PMID:14598172</p>
+            <p>AUTHORS: PMID:14598172;PMID:8132483</p>
           </body>
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00079">
+            <rdf:Description rdf:about="#R_MAR00079">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.3.2.1"/>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ARGtm"/>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR95954"/>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/ARGtm"/>
+                  <rdf:li rdf:resource="https://identifiers.org/tcdb/2.A.29.19.1"/>
                 </rdf:Bag>
               </bqbiol:is>
             </rdf:Description>
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01365c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01365c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01365m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01365m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG1628"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00080" sboTerm="SBO:0000176" id="MAR00080" name="V-Type ATPase, H+ Transporting, Lysosomal" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00080" sboTerm="SBO:0000176" id="R_MAR00080" name="V-Type ATPase, H+ Transporting, Lysosomal" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -372720,7 +372644,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00080">
+            <rdf:Description rdf:about="#R_MAR00080">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.6.3.14"/>
@@ -372735,16 +372659,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR00081" sboTerm="SBO:0000176" id="MAR00081" name="UDP-GlcNac:Betagal Beta-1, 3-N-Acetylglucosaminyltransferase 3, Golgi Apparatus" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00081" sboTerm="SBO:0000176" id="R_MAR00081" name="UDP-GlcNac:Betagal Beta-1, 3-N-Acetylglucosaminyltransferase 3, Golgi Apparatus" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -372753,7 +372677,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00081">
+            <rdf:Description rdf:about="#R_MAR00081">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/B3GNT312g"/>
@@ -372765,19 +372689,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02593g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03107g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02593g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03107g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02594g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02594g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106g" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="brn"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00082" sboTerm="SBO:0000176" id="MAR00082" name="UDP-GlcNac:Betagal Beta-1, 3-N-Acetylglucosaminyltransferase 3, Golgi Apparatus" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00082" sboTerm="SBO:0000176" id="R_MAR00082" name="UDP-GlcNac:Betagal Beta-1, 3-N-Acetylglucosaminyltransferase 3, Golgi Apparatus" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -372786,7 +372710,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00082">
+            <rdf:Description rdf:about="#R_MAR00082">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/B3GNT314g"/>
@@ -372798,19 +372722,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01880g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03107g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01880g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03107g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03584g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03584g" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="brn"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00086" sboTerm="SBO:0000176" id="MAR00086" name="Biotin-[Acetyl Coenzyme A-Carboxylase] Ligase, Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00086" sboTerm="SBO:0000176" id="R_MAR00086" name="Biotin-[Acetyl Coenzyme A-Carboxylase] Ligase, Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -372819,7 +372743,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00086">
+            <rdf:Description rdf:about="#R_MAR00086">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.3.4.15"/>
@@ -372832,19 +372756,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01401m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01401m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02759m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01402m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01402m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Hcs"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00087" sboTerm="SBO:0000185" id="MAR00087" name="B-Alanine Secretion via Secretory Vesicle (ATP Driven)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00087" sboTerm="SBO:0000185" id="R_MAR00087" name="B-Alanine Secretion via Secretory Vesicle (ATP Driven)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -372853,7 +372777,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00087">
+            <rdf:Description rdf:about="#R_MAR00087">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.65"/>
@@ -372866,21 +372790,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01383c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01383c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01383e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01383e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="VGAT"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00088" sboTerm="SBO:0000176" id="MAR00088" name="Beta-Aminopropion Aldehyde:NAD+ Oxidoreductase, Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00088" sboTerm="SBO:0000176" id="R_MAR00088" name="Beta-Aminopropion Aldehyde:NAD+ Oxidoreductase, Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -372888,7 +372812,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00088">
+            <rdf:Description rdf:about="#R_MAR00088">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.5.1.12"/>
@@ -372901,14 +372825,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00760m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00760m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01383m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01383m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -372917,7 +372841,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00089" sboTerm="SBO:0000185" id="MAR00089" name="Glucuronidated Compound Transport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00089" sboTerm="SBO:0000185" id="R_MAR00089" name="Glucuronidated Compound Transport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -372925,7 +372849,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00089">
+            <rdf:Description rdf:about="#R_MAR00089">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/BILDGLCURtr"/>
@@ -372937,13 +372861,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01397c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01397c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01397r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01397r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR00090" sboTerm="SBO:0000185" id="MAR00090" name="Glucuronidated Compound Transport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00090" sboTerm="SBO:0000185" id="R_MAR00090" name="Glucuronidated Compound Transport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -372951,7 +372875,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00090">
+            <rdf:Description rdf:about="#R_MAR00090">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/BILGLCURtr"/>
@@ -372963,13 +372887,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01398c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01398c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01398r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01398r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR00091" sboTerm="SBO:0000176" id="MAR00091" name="Biotinidase (Biotin), Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00091" sboTerm="SBO:0000176" id="R_MAR00091" name="Biotinidase (Biotin), Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -372978,7 +372902,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00091">
+            <rdf:Description rdf:about="#R_MAR00091">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.5.1.12"/>
@@ -372991,12 +372915,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01400m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01400m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02426m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01401m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02426m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01401m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -373005,7 +372929,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00092" sboTerm="SBO:0000176" id="MAR00092" name="Holocarboxylase Synthestase (Biotin Protein Ligase), Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00092" sboTerm="SBO:0000176" id="R_MAR00092" name="Holocarboxylase Synthestase (Biotin Protein Ligase), Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -373013,7 +372937,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00092">
+            <rdf:Description rdf:about="#R_MAR00092">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.5.1.12"/>
@@ -373026,19 +372950,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01356m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01402m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01356m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01402m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01334m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01357m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01357m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Hcs"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00093" sboTerm="SBO:0000185" id="MAR00093" name="Biotin Reversible Transport via Proton Symport, Mitochondria" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00093" sboTerm="SBO:0000185" id="R_MAR00093" name="Biotin Reversible Transport via Proton Symport, Mitochondria" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -373047,7 +372971,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00093">
+            <rdf:Description rdf:about="#R_MAR00093">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.5.1.12"/>
@@ -373060,18 +372984,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01401c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01401c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01401m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01401m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="hrm"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00094" sboTerm="SBO:0000185" id="MAR00094" name="Biotin Transport via Sodium Symport" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00094" sboTerm="SBO:0000185" id="R_MAR00094" name="Biotin Transport via Sodium Symport" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -373080,7 +373004,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00094">
+            <rdf:Description rdf:about="#R_MAR00094">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/BTNt3i"/>
@@ -373092,17 +373016,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01401e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01401e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01401c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01401c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -373111,7 +373035,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00095" sboTerm="SBO:0000185" id="MAR00095" name="Biotin Uptake (Antiport)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00095" sboTerm="SBO:0000185" id="R_MAR00095" name="Biotin Uptake (Antiport)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -373120,7 +373044,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00095">
+            <rdf:Description rdf:about="#R_MAR00095">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/BTNt4i"/>
@@ -373132,12 +373056,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01401e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01401e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01401c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01401c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -373146,7 +373070,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00096" sboTerm="SBO:0000176" id="MAR00096" name="Beta-Ureidopropionase (D-3-Amino-Isobutanoate Forming)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00096" sboTerm="SBO:0000176" id="R_MAR00096" name="Beta-Ureidopropionase (D-3-Amino-Isobutanoate Forming)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -373155,7 +373079,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00096">
+            <rdf:Description rdf:about="#R_MAR00096">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.5.1.6"/>
@@ -373168,20 +373092,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00922c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00922c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01596c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01633c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02579c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01596c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01633c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02579c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="pyd3"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00097" sboTerm="SBO:0000185" id="MAR00097" name="Butyrate Mitochondrial Transport via Proton Symport, Reversible" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00097" sboTerm="SBO:0000185" id="R_MAR00097" name="Butyrate Mitochondrial Transport via Proton Symport, Reversible" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -373189,7 +373113,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00097">
+            <rdf:Description rdf:about="#R_MAR00097">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/BUTt2m"/>
@@ -373201,18 +373125,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01410c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01410c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01410m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01410m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="hrm"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00098" sboTerm="SBO:0000185" id="MAR00098" name="Beta-Tocopherol (Vit. E) Transport" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00098" sboTerm="SBO:0000185" id="R_MAR00098" name="Beta-Tocopherol (Vit. E) Transport" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -373220,7 +373144,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00098">
+            <rdf:Description rdf:about="#R_MAR00098">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/BVITEt"/>
@@ -373232,13 +373156,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03484e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03484e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03484c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03484c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR00099" sboTerm="SBO:0000185" id="MAR00099" name="Benzoate Transport (Diffusion)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00099" sboTerm="SBO:0000185" id="R_MAR00099" name="Benzoate Transport (Diffusion)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -373246,7 +373170,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00099">
+            <rdf:Description rdf:about="#R_MAR00099">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.5.1.6"/>
@@ -373261,13 +373185,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01380e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01380e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01380c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01380c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR00100" sboTerm="SBO:0000185" id="MAR00100" name="Benzene Transporter, Endoplasmic Reticulum" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00100" sboTerm="SBO:0000185" id="R_MAR00100" name="Benzene Transporter, Endoplasmic Reticulum" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -373275,7 +373199,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00100">
+            <rdf:Description rdf:about="#R_MAR00100">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/BZtr"/>
@@ -373289,47 +373213,48 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01380c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01380c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01380r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01380r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR00101" sboTerm="SBO:0000176" id="MAR00101" name="C-14 Sterol Reductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00101" sboTerm="SBO:0000176" id="R_MAR00101" name="C-14 Sterol Reductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
-            <p>AUTHORS: PMID:16784888</p>
+            <p>AUTHORS: PMID:11969204;PMID:16784888;PMID:7946524</p>
           </body>
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00101">
+            <rdf:Description rdf:about="#R_MAR00101">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.1.70"/>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/C14STRr"/>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR96383"/>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/C14STRr"/>
+                  <rdf:li rdf:resource="https://identifiers.org/vmhreaction/r0780"/>
                 </rdf:Bag>
               </bqbiol:is>
             </rdf:Description>
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00941r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00941r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02554r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00367r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00367r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="LBR"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00102" sboTerm="SBO:0000185" id="MAR00102" name="C160 Transport into the Mitochondria" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00102" sboTerm="SBO:0000185" id="R_MAR00102" name="C160 Transport into the Mitochondria" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -373338,7 +373263,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00102">
+            <rdf:Description rdf:about="#R_MAR00102">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/C160CRNt"/>
@@ -373350,16 +373275,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02411c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02411c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02411m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02411m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="colt"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00103" sboTerm="SBO:0000176" id="MAR00103" name="Carnitine O-Palmitoyltransferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00103" sboTerm="SBO:0000176" id="R_MAR00103" name="Carnitine O-Palmitoyltransferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -373367,7 +373292,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00103">
+            <rdf:Description rdf:about="#R_MAR00103">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.21"/>
@@ -373380,18 +373305,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00051c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00051c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02117c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02117c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="whd"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00104" sboTerm="SBO:0000176" id="MAR00104" name="C161 Transport into the Mitochondria" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00104" sboTerm="SBO:0000176" id="R_MAR00104" name="C161 Transport into the Mitochondria" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -373399,7 +373324,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00104">
+            <rdf:Description rdf:about="#R_MAR00104">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.21"/>
@@ -373412,18 +373337,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02117m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02117m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00051m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00051m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CPT2"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00105" sboTerm="SBO:0000185" id="MAR00105" name="C161 Transport into the Mitochondria" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00105" sboTerm="SBO:0000185" id="R_MAR00105" name="C161 Transport into the Mitochondria" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -373431,7 +373356,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00105">
+            <rdf:Description rdf:about="#R_MAR00105">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.21"/>
@@ -373444,16 +373369,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02117c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02117c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02117m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02117m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="colt"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00106" sboTerm="SBO:0000185" id="MAR00106" name="C161 Transport into the Mitochondria" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00106" sboTerm="SBO:0000185" id="R_MAR00106" name="C161 Transport into the Mitochondria" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -373461,7 +373386,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00106">
+            <rdf:Description rdf:about="#R_MAR00106">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.21"/>
@@ -373474,16 +373399,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02676c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02676c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02676m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02676m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="colt"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00107" sboTerm="SBO:0000185" id="MAR00107" name="C180 Transport into the Mitochondria" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00107" sboTerm="SBO:0000185" id="R_MAR00107" name="C180 Transport into the Mitochondria" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -373492,7 +373417,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00107">
+            <rdf:Description rdf:about="#R_MAR00107">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/C180CRNt"/>
@@ -373504,16 +373429,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02940c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02940c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02940m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02940m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="colt"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00108" sboTerm="SBO:0000176" id="MAR00108" name="Transport of Octadecenoyl Coenzyme A into Mitochondrial Matrix" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00108" sboTerm="SBO:0000176" id="R_MAR00108" name="Transport of Octadecenoyl Coenzyme A into Mitochondrial Matrix" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -373522,7 +373447,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00108">
+            <rdf:Description rdf:about="#R_MAR00108">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.21"/>
@@ -373535,18 +373460,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02647c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02647c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02639c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02639c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="whd"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00109" sboTerm="SBO:0000176" id="MAR00109" name="Transport of Octadecenoyl Coenzyme A into Mitochondrial Matrix" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00109" sboTerm="SBO:0000176" id="R_MAR00109" name="Transport of Octadecenoyl Coenzyme A into Mitochondrial Matrix" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -373555,7 +373480,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00109">
+            <rdf:Description rdf:about="#R_MAR00109">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.21"/>
@@ -373568,18 +373493,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02639m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02639m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02348m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02647m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02647m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CPT2"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00110" sboTerm="SBO:0000185" id="MAR00110" name="C181 Transport into the Mitochondria" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00110" sboTerm="SBO:0000185" id="R_MAR00110" name="C181 Transport into the Mitochondria" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -373588,7 +373513,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00110">
+            <rdf:Description rdf:about="#R_MAR00110">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.21"/>
@@ -373601,16 +373526,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02639c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02639c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02639m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02639m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="colt"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00111" sboTerm="SBO:0000185" id="MAR00111" name="Arachidonic Acid Transport into the Mitochondria" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00111" sboTerm="SBO:0000185" id="R_MAR00111" name="Arachidonic Acid Transport into the Mitochondria" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -373619,7 +373544,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00111">
+            <rdf:Description rdf:about="#R_MAR00111">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/C204CRNt"/>
@@ -373631,16 +373556,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01363c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01363c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01363m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01363m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="colt"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00112" sboTerm="SBO:0000185" id="MAR00112" name="C226 Transport into the Mitochondria" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00112" sboTerm="SBO:0000185" id="R_MAR00112" name="C226 Transport into the Mitochondria" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -373649,7 +373574,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00112">
+            <rdf:Description rdf:about="#R_MAR00112">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/C226CRNt"/>
@@ -373661,13 +373586,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01723c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01723c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01723m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01723m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR00115" sboTerm="SBO:0000176" id="MAR00115" name="C-3 Sterol Keto Reductase (Zymosterol)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00115" sboTerm="SBO:0000176" id="R_MAR00115" name="C-3 Sterol Keto Reductase (Zymosterol)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -373676,7 +373601,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00115">
+            <rdf:Description rdf:about="#R_MAR00115">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.17"/>
@@ -373689,19 +373614,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM04082r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04082r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02554r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03158r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03158r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Mfe2"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00119" sboTerm="SBO:0000185" id="MAR00119" name="Ca ATPase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00119" sboTerm="SBO:0000185" id="R_MAR00119" name="Ca ATPase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -373710,7 +373635,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00119">
+            <rdf:Description rdf:about="#R_MAR00119">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.6.3.6"/>
@@ -373723,21 +373648,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01413c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01413c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01413e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01413e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="PMCA"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00120" sboTerm="SBO:0000185" id="MAR00120" name="Intracellular Transport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00120" sboTerm="SBO:0000185" id="R_MAR00120" name="Intracellular Transport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -373745,7 +373670,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00120">
+            <rdf:Description rdf:about="#R_MAR00120">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.197"/>
@@ -373758,46 +373683,49 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01427c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01427c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01427m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01427m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR00121" sboTerm="SBO:0000176" id="MAR00121" name="Phosphatidate Cytidylyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00121" sboTerm="SBO:0000176" id="R_MAR00121" name="Phosphatidate Cytidylyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
+            <p>AUTHORS: PMID:1330695;PMID:9370329</p>
           </body>
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00121">
+            <rdf:Description rdf:about="#R_MAR00121">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.7.41"/>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CDS"/>
+                  <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R01799"/>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR96563"/>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/CDS"/>
+                  <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_0607"/>
                 </rdf:Bag>
               </bqbiol:is>
             </rdf:Description>
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01623c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02730c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01623c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02730c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01427c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01427c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Cds"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00122" sboTerm="SBO:0000176" id="MAR00122" name="Phosphatidate Cytidylyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00122" sboTerm="SBO:0000176" id="R_MAR00122" name="Phosphatidate Cytidylyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -373805,7 +373733,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00122">
+            <rdf:Description rdf:about="#R_MAR00122">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.7.41"/>
@@ -373818,19 +373746,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01623m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02730m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01623m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02730m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02759m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01427m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01427m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Cds"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00123" sboTerm="SBO:0000185" id="MAR00123" name="Cholesterol Intracellular Transport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00123" sboTerm="SBO:0000185" id="R_MAR00123" name="Cholesterol Intracellular Transport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -373839,7 +373767,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00123">
+            <rdf:Description rdf:about="#R_MAR00123">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CHSTEROLt2"/>
@@ -373853,13 +373781,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01450r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01450m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR00124" sboTerm="SBO:0000185" id="MAR00124" name="Citrulline Mitochondrial Transport via Proton Antiport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00124" sboTerm="SBO:0000185" id="R_MAR00124" name="Citrulline Mitochondrial Transport via Proton Antiport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -373868,7 +373796,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00124">
+            <rdf:Description rdf:about="#R_MAR00124">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.2.1.14"/>
@@ -373881,16 +373809,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01588m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01588m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01588c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01588c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG1628"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00125" sboTerm="SBO:0000185" id="MAR00125" name="Citrate Transport, Mitochondrial" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00125" sboTerm="SBO:0000185" id="R_MAR00125" name="Citrate Transport, Mitochondrial" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -373899,7 +373827,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00125">
+            <rdf:Description rdf:about="#R_MAR00125">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.56"/>
@@ -373912,18 +373840,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01587c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02439m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01587c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02439m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01587m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02439c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01587m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02439c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="sea"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00126" sboTerm="SBO:0000185" id="MAR00126" name="Chloride Transport via Hydroxide Antiport (2:1)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00126" sboTerm="SBO:0000185" id="R_MAR00126" name="Chloride Transport via Hydroxide Antiport (2:1)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -373932,7 +373860,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00126">
+            <rdf:Description rdf:about="#R_MAR00126">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.3.2"/>
@@ -373945,18 +373873,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01442e" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01442e" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01442c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02040e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01442c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02040e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Prestin"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00127" sboTerm="SBO:0000185" id="MAR00127" name="Fatty Acid Intracellular Transport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00127" sboTerm="SBO:0000185" id="R_MAR00127" name="Fatty Acid Intracellular Transport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -373964,7 +373892,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00127">
+            <rdf:Description rdf:about="#R_MAR00127">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CLPNDCOAtx"/>
@@ -373976,13 +373904,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00121c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00121c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00121x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00121x" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR00128" sboTerm="SBO:0000185" id="MAR00128" name="Transport into the Mitochondria (Carnitine)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00128" sboTerm="SBO:0000185" id="R_MAR00128" name="Transport into the Mitochondria (Carnitine)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -373990,7 +373918,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00128">
+            <rdf:Description rdf:about="#R_MAR00128">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CLPNDCRNt"/>
@@ -374002,16 +373930,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00120c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00120c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00120m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00120m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="colt"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00129" sboTerm="SBO:0000176" id="MAR00129" name="Cardiolipin Synthase (Homo Sapiens)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00129" sboTerm="SBO:0000176" id="R_MAR00129" name="Cardiolipin Synthase (Homo Sapiens)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -374020,7 +373948,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00129">
+            <rdf:Description rdf:about="#R_MAR00129">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.21"/>
@@ -374033,19 +373961,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02715c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01426c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02715c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01426c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01589c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01590c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01589c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01590c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CLS"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00130" sboTerm="SBO:0000185" id="MAR00130" name="CO2 Nuclear Transport via Diffusion" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00130" sboTerm="SBO:0000185" id="R_MAR00130" name="CO2 Nuclear Transport via Diffusion" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -374053,7 +373981,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00130">
+            <rdf:Description rdf:about="#R_MAR00130">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CO2tn"/>
@@ -374065,13 +373993,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01596n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01596n" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01596c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01596c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR00131" sboTerm="SBO:0000176" id="MAR00131" name="Methyltransferase Coq3" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00131" sboTerm="SBO:0000176" id="R_MAR00131" name="Methyltransferase Coq3" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -374080,7 +374008,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00131">
+            <rdf:Description rdf:about="#R_MAR00131">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/COQ3m"/>
@@ -374092,19 +374020,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02877m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03175m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02877m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03175m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02871m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03103m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02871m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03103m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Coq3"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00132" sboTerm="SBO:0000176" id="MAR00132" name="Ubiquinone Biosynthesis Methyltransferase Coq5" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00132" sboTerm="SBO:0000176" id="R_MAR00132" name="Ubiquinone Biosynthesis Methyltransferase Coq5" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -374113,7 +374041,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00132">
+            <rdf:Description rdf:about="#R_MAR00132">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/COQ5m"/>
@@ -374125,16 +374053,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02877m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03173m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02877m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03173m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02871m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03174m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02871m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03174m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR00133" sboTerm="SBO:0000176" id="MAR00133" name="Ubiquinone Biosynthesis Monooxgenase Coq6" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00133" sboTerm="SBO:0000176" id="R_MAR00133" name="Ubiquinone Biosynthesis Monooxgenase Coq6" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -374143,7 +374071,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00133">
+            <rdf:Description rdf:about="#R_MAR00133">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/COQ6m"/>
@@ -374155,18 +374083,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00657m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00657m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03173m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03173m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Coq6"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00134" sboTerm="SBO:0000176" id="MAR00134" name="Ubiquinone Biosynthesis Coq7" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00134" sboTerm="SBO:0000176" id="R_MAR00134" name="Ubiquinone Biosynthesis Coq7" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -374175,7 +374103,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00134">
+            <rdf:Description rdf:about="#R_MAR00134">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.1"/>
@@ -374188,21 +374116,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03174m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03174m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03175m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03175m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Coq7"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00135" sboTerm="SBO:0000176" id="MAR00135" name="P-Coumaroyl Coenzyme A Formation" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00135" sboTerm="SBO:0000176" id="R_MAR00135" name="P-Coumaroyl Coenzyme A Formation" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -374211,7 +374139,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00135">
+            <rdf:Description rdf:about="#R_MAR00135">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.12"/>
@@ -374224,17 +374152,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00981m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00981m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01334m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00982m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00982m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR00136" sboTerm="SBO:0000185" id="MAR00136" name="Crmp Hs Transport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00136" sboTerm="SBO:0000185" id="R_MAR00136" name="Crmp Hs Transport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -374243,7 +374171,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00136">
+            <rdf:Description rdf:about="#R_MAR00136">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.7.15"/>
@@ -374256,13 +374184,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01431c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01431c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01431e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01431e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR00137" sboTerm="SBO:0000185" id="MAR00137" name="L-Carnitine Outward Transport (H+ Antiport)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00137" sboTerm="SBO:0000185" id="R_MAR00137" name="L-Carnitine Outward Transport (H+ Antiport)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -374271,7 +374199,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00137">
+            <rdf:Description rdf:about="#R_MAR00137">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CRNtHa"/>
@@ -374283,18 +374211,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Orct"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00138" sboTerm="SBO:0000185" id="MAR00138" name="Carnitine Transport Peroxisome to Mitochondria" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00138" sboTerm="SBO:0000185" id="R_MAR00138" name="Carnitine Transport Peroxisome to Mitochondria" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -374303,7 +374231,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00138">
+            <rdf:Description rdf:about="#R_MAR00138">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CRNtx"/>
@@ -374315,13 +374243,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00950x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00950x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00950m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00950m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR00139" sboTerm="SBO:0000176" id="MAR00139" name="Carnitine Dimethyl Nonanoyl Transferase, Revsible, Peroxisomal" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00139" sboTerm="SBO:0000176" id="R_MAR00139" name="Carnitine Dimethyl Nonanoyl Transferase, Revsible, Peroxisomal" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -374330,7 +374258,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00139">
+            <rdf:Description rdf:about="#R_MAR00139">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.7"/>
@@ -374343,12 +374271,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02348x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03554x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03554x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01597x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00950x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00950x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -374357,7 +374285,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00140" sboTerm="SBO:0000185" id="MAR00140" name="Transport of Diacylglycerol, Endoplasmatic Reticulum" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00140" sboTerm="SBO:0000185" id="R_MAR00140" name="Transport of Diacylglycerol, Endoplasmatic Reticulum" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -374365,7 +374293,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00140">
+            <rdf:Description rdf:about="#R_MAR00140">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.5.4.4"/>
@@ -374378,13 +374306,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00240r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00240r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00240c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00240c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR00141" sboTerm="SBO:0000176" id="MAR00141" name="Diacylglycerol Phosphate Kinase (Homo Sapiens)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00141" sboTerm="SBO:0000176" id="R_MAR00141" name="Diacylglycerol Phosphate Kinase (Homo Sapiens)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -374392,7 +374320,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00141">
+            <rdf:Description rdf:about="#R_MAR00141">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.1.107"/>
@@ -374405,19 +374333,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00240n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00240n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371n" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02733n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02733n" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="rdgA"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00142" sboTerm="SBO:0000185" id="MAR00142" name="Diacylglycerol Transport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00142" sboTerm="SBO:0000185" id="R_MAR00142" name="Diacylglycerol Transport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -374425,7 +374353,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00142">
+            <rdf:Description rdf:about="#R_MAR00142">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.1.107"/>
@@ -374438,13 +374366,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00240e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00240e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00240c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00240c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR00143" sboTerm="SBO:0000185" id="MAR00143" name="Transport into the Mitochondria (Carnitine)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00143" sboTerm="SBO:0000185" id="R_MAR00143" name="Transport into the Mitochondria (Carnitine)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -374452,7 +374380,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00143">
+            <rdf:Description rdf:about="#R_MAR00143">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.5.4.12"/>
@@ -374465,16 +374393,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00092c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00092c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00092m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00092m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="colt"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00144" sboTerm="SBO:0000176" id="MAR00144" name="Palmitoyl Coenzyme A Desaturase (N-C16:0CoA -&gt; N-C16:1CoA)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00144" sboTerm="SBO:0000176" id="R_MAR00144" name="Palmitoyl Coenzyme A Desaturase (N-C16:0CoA -&gt; N-C16:1CoA)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -374483,7 +374411,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00144">
+            <rdf:Description rdf:about="#R_MAR00144">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.19.1"/>
@@ -374496,21 +374424,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02678c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02678c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02552c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02677c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02552c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02677c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Desat1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00145" sboTerm="SBO:0000176" id="MAR00145" name="Fatty Acyl Coenzyme A Desaturase (N-C18:2CoA -&gt; N-C18:3CoA)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00145" sboTerm="SBO:0000176" id="R_MAR00145" name="Fatty Acyl Coenzyme A Desaturase (N-C18:2CoA -&gt; N-C18:3CoA)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -374518,7 +374446,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00145">
+            <rdf:Description rdf:about="#R_MAR00145">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.19.1"/>
@@ -374531,18 +374459,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02390c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02390c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00108c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02552c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00108c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02552c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR00146" sboTerm="SBO:0000176" id="MAR00146" name="Stearoyl Coenzyme A Desaturase (N-C18:0CoA -&gt; N-C18:1CoA)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00146" sboTerm="SBO:0000176" id="R_MAR00146" name="Stearoyl Coenzyme A Desaturase (N-C18:0CoA -&gt; N-C18:1CoA)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -374551,7 +374479,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00146">
+            <rdf:Description rdf:about="#R_MAR00146">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.19.1"/>
@@ -374564,21 +374492,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02941c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02941c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02552c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02647c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02552c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02647c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Desat1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00147" sboTerm="SBO:0000176" id="MAR00147" name="Stearoyl Coenzyme A Desaturase (N-C18:0CoA -&gt; N-C18:1CoA)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00147" sboTerm="SBO:0000176" id="R_MAR00147" name="Stearoyl Coenzyme A Desaturase (N-C18:0CoA -&gt; N-C18:1CoA)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -374587,7 +374515,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00147">
+            <rdf:Description rdf:about="#R_MAR00147">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.19.1"/>
@@ -374600,21 +374528,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02941c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02941c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02552c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03791c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02552c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03791c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Desat1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00148" sboTerm="SBO:0000176" id="MAR00148" name="Stearoyl Coenzyme A Desaturase (N-C18:0CoA -&gt; N-C18:1CoA)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00148" sboTerm="SBO:0000176" id="R_MAR00148" name="Stearoyl Coenzyme A Desaturase (N-C18:0CoA -&gt; N-C18:1CoA)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -374623,7 +374551,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00148">
+            <rdf:Description rdf:about="#R_MAR00148">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.19.1"/>
@@ -374636,21 +374564,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02941c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02941c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00057c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02552c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00057c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02552c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Desat1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00149" sboTerm="SBO:0000176" id="MAR00149" name="Fatty Acyl Coenzyme A Desaturase (N-C18:1CoA -&gt; N-C18:2CoA)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00149" sboTerm="SBO:0000176" id="R_MAR00149" name="Fatty Acyl Coenzyme A Desaturase (N-C18:1CoA -&gt; N-C18:2CoA)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -374658,7 +374586,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00149">
+            <rdf:Description rdf:about="#R_MAR00149">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.99.25"/>
@@ -374671,18 +374599,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02647c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02647c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00106c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02552c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00106c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02552c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR00150" sboTerm="SBO:0000176" id="MAR00150" name="Fatty Acyl Coenzyme A Desaturase (N-C18:1CoA -&gt; N-C18:2CoA)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00150" sboTerm="SBO:0000176" id="R_MAR00150" name="Fatty Acyl Coenzyme A Desaturase (N-C18:1CoA -&gt; N-C18:2CoA)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -374690,7 +374618,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00150">
+            <rdf:Description rdf:about="#R_MAR00150">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.19.1"/>
@@ -374703,18 +374631,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03791c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03791c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00106c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02552c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00106c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02552c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR00151" sboTerm="SBO:0000176" id="MAR00151" name="Fatty Acyl Coenzyme A Desaturase (N-C18:1CoA -&gt; N-C18:2CoA)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00151" sboTerm="SBO:0000176" id="R_MAR00151" name="Fatty Acyl Coenzyme A Desaturase (N-C18:1CoA -&gt; N-C18:2CoA)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -374722,7 +374650,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00151">
+            <rdf:Description rdf:about="#R_MAR00151">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.99.25"/>
@@ -374735,18 +374663,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00057c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00057c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00106c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02552c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00106c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02552c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR00152" sboTerm="SBO:0000176" id="MAR00152" name="Fatty Acyl Coenzyme A Desaturase (N-C18:2CoA -&gt; N-C18:3CoA)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00152" sboTerm="SBO:0000176" id="R_MAR00152" name="Fatty Acyl Coenzyme A Desaturase (N-C18:2CoA -&gt; N-C18:3CoA)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -374754,7 +374682,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00152">
+            <rdf:Description rdf:about="#R_MAR00152">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.99.25"/>
@@ -374767,18 +374695,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02391c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02391c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01934c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02552c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01934c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02552c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR00181" sboTerm="SBO:0000176" id="MAR00181" name="Fatty Acyl Coenzyme A Desaturase (N-C20:3CoA -&gt; N-C20:4CoA)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00181" sboTerm="SBO:0000176" id="R_MAR00181" name="Fatty Acyl Coenzyme A Desaturase (N-C20:3CoA -&gt; N-C20:4CoA)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -374786,7 +374714,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00181">
+            <rdf:Description rdf:about="#R_MAR00181">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.19.1"/>
@@ -374799,18 +374727,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01697c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01697c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01364c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02552c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01364c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02552c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR00186" sboTerm="SBO:0000176" id="MAR00186" name="Fatty Acyl Coenzyme A Desaturase (N-C20:4CoA -&gt; N-C20:5CoA)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00186" sboTerm="SBO:0000176" id="R_MAR00186" name="Fatty Acyl Coenzyme A Desaturase (N-C20:4CoA -&gt; N-C20:5CoA)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -374818,7 +374746,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00186">
+            <rdf:Description rdf:about="#R_MAR00186">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.19.1"/>
@@ -374831,18 +374759,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00125c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00125c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00103c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02552c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00103c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02552c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR00205" sboTerm="SBO:0000176" id="MAR00205" name="Fatty Acyl Coenzyme A Desaturase (N-C22:4CoA -&gt; N-C22:5CoA)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00205" sboTerm="SBO:0000176" id="R_MAR00205" name="Fatty Acyl Coenzyme A Desaturase (N-C22:4CoA -&gt; N-C22:5CoA)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -374850,7 +374778,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00205">
+            <rdf:Description rdf:about="#R_MAR00205">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.19.1"/>
@@ -374863,18 +374791,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00119x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00119x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00093x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040x" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02552x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00093x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040x" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02552x" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR00218" sboTerm="SBO:0000176" id="MAR00218" name="Fatty Acyl Coenzyme A Desaturase (N-C22:5CoA -&gt; N-C22:6CoA)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00218" sboTerm="SBO:0000176" id="R_MAR00218" name="Fatty Acyl Coenzyme A Desaturase (N-C22:5CoA -&gt; N-C22:6CoA)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -374882,7 +374810,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00218">
+            <rdf:Description rdf:about="#R_MAR00218">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.19.1"/>
@@ -374895,18 +374823,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00121x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00121x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00095x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040x" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02552x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00095x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040x" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02552x" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR00219" sboTerm="SBO:0000185" id="MAR00219" name="Bile Acid Intracellular Transport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00219" sboTerm="SBO:0000185" id="R_MAR00219" name="Bile Acid Intracellular Transport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -374914,7 +374842,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00219">
+            <rdf:Description rdf:about="#R_MAR00219">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.19.1"/>
@@ -374927,13 +374855,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01987e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01987e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01987c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01987c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR00220" sboTerm="SBO:0000185" id="MAR00220" name="Bile Acid Intracellular Transport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00220" sboTerm="SBO:0000185" id="R_MAR00220" name="Bile Acid Intracellular Transport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -374941,7 +374869,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00220">
+            <rdf:Description rdf:about="#R_MAR00220">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.19.1"/>
@@ -374954,13 +374882,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01987x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01987x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01987c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01987c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR00221" sboTerm="SBO:0000185" id="MAR00221" name="Lipid, Flip-Flop Intracellular Transport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00221" sboTerm="SBO:0000185" id="R_MAR00221" name="Lipid, Flip-Flop Intracellular Transport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -374969,7 +374897,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00221">
+            <rdf:Description rdf:about="#R_MAR00221">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.1.1.34"/>
@@ -374982,13 +374910,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00758m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00758m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00758x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00758x" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR00229" sboTerm="SBO:0000185" id="MAR00229" name="Dihydrofolate Reversible Mitochondrial Transport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00229" sboTerm="SBO:0000185" id="R_MAR00229" name="Dihydrofolate Reversible Mitochondrial Transport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -374997,7 +374925,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00229">
+            <rdf:Description rdf:about="#R_MAR00229">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.8.2.2"/>
@@ -375010,13 +374938,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01700c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01700c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01700m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01700m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR00251" sboTerm="SBO:0000176" id="MAR00251" name=" 2, 3-Diketo-5-Methylthio-1-Phosphopentane Degradation Reaction" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00251" sboTerm="SBO:0000176" id="R_MAR00251" name=" 2, 3-Diketo-5-Methylthio-1-Phosphopentane Degradation Reaction" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -375025,7 +374953,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00251">
+            <rdf:Description rdf:about="#R_MAR00251">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/DKMPPD"/>
@@ -375037,18 +374965,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00572c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00572c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01016c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01833c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01016c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01833c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR00252" sboTerm="SBO:0000185" id="MAR00252" name="Transport into the Mitochondria (Carnitine)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00252" sboTerm="SBO:0000185" id="R_MAR00252" name="Transport into the Mitochondria (Carnitine)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -375056,7 +374984,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00252">
+            <rdf:Description rdf:about="#R_MAR00252">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/DLNLCGCRNt"/>
@@ -375068,16 +374996,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01774c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01774c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01774m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01774m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="colt"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00285" sboTerm="SBO:0000176" id="MAR00285" name="Dimethylallyltranstransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00285" sboTerm="SBO:0000176" id="R_MAR00285" name="Dimethylallyltranstransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -375086,7 +375014,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00285">
+            <rdf:Description rdf:about="#R_MAR00285">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.5.1.1"/>
@@ -375099,18 +375027,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02187x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01706x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02187x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01706x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02759x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01953x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01953x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Fpps"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00286" sboTerm="SBO:0000185" id="MAR00286" name="Transport of 2, 6 Dimethylheptanoyl Carnitine, Mitochondrial" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00286" sboTerm="SBO:0000185" id="R_MAR00286" name="Transport of 2, 6 Dimethylheptanoyl Carnitine, Mitochondrial" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -375118,7 +375046,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00286">
+            <rdf:Description rdf:about="#R_MAR00286">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.5.1.1"/>
@@ -375131,13 +375059,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00577c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00577c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00577m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00577m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR00315" sboTerm="SBO:0000185" id="MAR00315" name="4, 8 Dimethylnonanoyl Carnitine Transport, Mitochondrial" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00315" sboTerm="SBO:0000185" id="R_MAR00315" name="4, 8 Dimethylnonanoyl Carnitine Transport, Mitochondrial" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -375146,7 +375074,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00315">
+            <rdf:Description rdf:about="#R_MAR00315">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.21"/>
@@ -375159,13 +375087,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00950c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00950c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00950m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00950m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR00316" sboTerm="SBO:0000185" id="MAR00316" name="Dolichyl Beta-D-Glucosyl Phosphate Flippase (Liver)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00316" sboTerm="SBO:0000185" id="R_MAR00316" name="Dolichyl Beta-D-Glucosyl Phosphate Flippase (Liver)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -375174,7 +375102,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00316">
+            <rdf:Description rdf:about="#R_MAR00316">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/DOLGLCP_Lter"/>
@@ -375187,13 +375115,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01731c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01731c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01731r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01731r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR00333" sboTerm="SBO:0000185" id="MAR00333" name="Dolichol Diffusion, Human (Uterus)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00333" sboTerm="SBO:0000185" id="R_MAR00333" name="Dolichol Diffusion, Human (Uterus)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -375201,7 +375129,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00333">
+            <rdf:Description rdf:about="#R_MAR00333">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.6.1.43"/>
@@ -375215,13 +375143,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01730r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01730r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01730c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01730c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR00334" sboTerm="SBO:0000185" id="MAR00334" name="Secretion of Dopamine via Secretory Vesicle (ATP Driven)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00334" sboTerm="SBO:0000185" id="R_MAR00334" name="Secretion of Dopamine via Secretory Vesicle (ATP Driven)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -375230,7 +375158,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00334">
+            <rdf:Description rdf:about="#R_MAR00334">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.1.1.6"/>
@@ -375243,21 +375171,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01736c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01736c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01736e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01736e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Vmat"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00441" sboTerm="SBO:0000176" id="MAR00441" name="Diphosphomevalonate Decarboxylase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00441" sboTerm="SBO:0000176" id="R_MAR00441" name="Diphosphomevalonate Decarboxylase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -375266,7 +375194,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00441">
+            <rdf:Description rdf:about="#R_MAR00441">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.1.1.33"/>
@@ -375279,20 +375207,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00164x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00164x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01596x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02187x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01596x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02187x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Mvd"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00442" sboTerm="SBO:0000176" id="MAR00442" name="D-Proline Oxidase, Perixosomal" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00442" sboTerm="SBO:0000176" id="R_MAR00442" name="D-Proline Oxidase, Perixosomal" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -375301,7 +375229,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00442">
+            <rdf:Description rdf:about="#R_MAR00442">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.4.3.3"/>
@@ -375314,19 +375242,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02630x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01742x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01742x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02041x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00558x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00558x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Daao1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00447" sboTerm="SBO:0000176" id="MAR00447" name="Ecgonine Isomerase, Endoplasmatic Reticulum" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00447" sboTerm="SBO:0000176" id="R_MAR00447" name="Ecgonine Isomerase, Endoplasmatic Reticulum" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -375335,7 +375263,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00447">
+            <rdf:Description rdf:about="#R_MAR00447">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ECGISOr"/>
@@ -375347,13 +375275,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01766r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01766r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03849r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03849r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR00451" sboTerm="SBO:0000185" id="MAR00451" name="Transport of 8Z,11Z,14Z,17Z-Eicosatetraenoylcarnitine, Mitochondrial" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00451" sboTerm="SBO:0000185" id="R_MAR00451" name="Transport of 8Z,11Z,14Z,17Z-Eicosatetraenoylcarnitine, Mitochondrial" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -375361,7 +375289,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00451">
+            <rdf:Description rdf:about="#R_MAR00451">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EICOSTETCRNt"/>
@@ -375373,16 +375301,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00124c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00124c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00124m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00124m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="colt"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00452" sboTerm="SBO:0000176" id="MAR00452" name="Carnitine O-Palmitoyltransferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00452" sboTerm="SBO:0000176" id="R_MAR00452" name="Carnitine O-Palmitoyltransferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -375390,7 +375318,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00452">
+            <rdf:Description rdf:about="#R_MAR00452">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.21"/>
@@ -375403,18 +375331,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00057c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00057c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00126c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00126c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="whd"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00455" sboTerm="SBO:0000176" id="MAR00455" name="Carnitine Transferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00455" sboTerm="SBO:0000176" id="R_MAR00455" name="Carnitine Transferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -375422,7 +375350,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00455">
+            <rdf:Description rdf:about="#R_MAR00455">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.6.1.1"/>
@@ -375435,18 +375363,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00126m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00126m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00057m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00057m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CPT2"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00465" sboTerm="SBO:0000185" id="MAR00465" name="Transport of (9E)-Octadecenoylcarnitine, Mitochondrial" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00465" sboTerm="SBO:0000185" id="R_MAR00465" name="Transport of (9E)-Octadecenoylcarnitine, Mitochondrial" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -375454,7 +375382,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00465">
+            <rdf:Description rdf:about="#R_MAR00465">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.21"/>
@@ -375467,16 +375395,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00126c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00126c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00126m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00126m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="colt"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00471" sboTerm="SBO:0000176" id="MAR00471" name="Endo-Beta-N-Acetylglucosaminidase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00471" sboTerm="SBO:0000176" id="R_MAR00471" name="Endo-Beta-N-Acetylglucosaminidase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -375485,7 +375413,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00471">
+            <rdf:Description rdf:about="#R_MAR00471">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.2.1.96"/>
@@ -375498,18 +375426,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01651c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01651c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02527c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01653c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02527c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01653c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG5613"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00472" sboTerm="SBO:0000176" id="MAR00472" name="Endo-Beta-N-Acetylglucosaminidase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00472" sboTerm="SBO:0000176" id="R_MAR00472" name="Endo-Beta-N-Acetylglucosaminidase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -375518,7 +375446,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00472">
+            <rdf:Description rdf:about="#R_MAR00472">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.2.1.96"/>
@@ -375531,18 +375459,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02509c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02509c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02527c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02511c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02527c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02511c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG5613"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00473" sboTerm="SBO:0000176" id="MAR00473" name="Endomannosidase (Glc1Man-Producing), Golgi Apparatus" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00473" sboTerm="SBO:0000176" id="R_MAR00473" name="Endomannosidase (Glc1Man-Producing), Golgi Apparatus" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -375551,7 +375479,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00473">
+            <rdf:Description rdf:about="#R_MAR00473">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ENMAN1g"/>
@@ -375563,15 +375491,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00138g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00138g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00150g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03591g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00150g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03591g" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR00474" sboTerm="SBO:0000176" id="MAR00474" name="Endomannosidase (Glc2Man-Producing), Golgi Apparatus" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00474" sboTerm="SBO:0000176" id="R_MAR00474" name="Endomannosidase (Glc2Man-Producing), Golgi Apparatus" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -375580,7 +375508,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00474">
+            <rdf:Description rdf:about="#R_MAR00474">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.2.1.96"/>
@@ -375593,15 +375521,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00139g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00139g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00150g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03592g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00150g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03592g" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR00475" sboTerm="SBO:0000176" id="MAR00475" name="Endomannosidase (Glc3Man-Producing), Golgi Apparatus" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00475" sboTerm="SBO:0000176" id="R_MAR00475" name="Endomannosidase (Glc3Man-Producing), Golgi Apparatus" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -375610,7 +375538,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00475">
+            <rdf:Description rdf:about="#R_MAR00475">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.2.1.96"/>
@@ -375623,15 +375551,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00140g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00140g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00150g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03593g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00150g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03593g" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR00480" sboTerm="SBO:0000176" id="MAR00480" name="Endomannosidase (M6Masnc-Producing), Golgi Apparatus" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00480" sboTerm="SBO:0000176" id="R_MAR00480" name="Endomannosidase (M6Masnc-Producing), Golgi Apparatus" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -375640,7 +375568,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00480">
+            <rdf:Description rdf:about="#R_MAR00480">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.2.1.96"/>
@@ -375653,15 +375581,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01971g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01971g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00149g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03591g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00149g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03591g" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR00485" sboTerm="SBO:0000176" id="MAR00485" name="Endomannosidase (M6Masnb2-Producing), Golgi Apparatus" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00485" sboTerm="SBO:0000176" id="R_MAR00485" name="Endomannosidase (M6Masnb2-Producing), Golgi Apparatus" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -375669,7 +375597,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00485">
+            <rdf:Description rdf:about="#R_MAR00485">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.2.1.96"/>
@@ -375682,15 +375610,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01970g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01970g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00148g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03591g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00148g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03591g" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR00554" sboTerm="SBO:0000176" id="MAR00554" name="Endomannosidase (M5Masnb1-Producing), Golgi Apparatus" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00554" sboTerm="SBO:0000176" id="R_MAR00554" name="Endomannosidase (M5Masnb1-Producing), Golgi Apparatus" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -375698,7 +375626,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00554">
+            <rdf:Description rdf:about="#R_MAR00554">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.2.1.96"/>
@@ -375711,15 +375639,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01969g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01969g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00143g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03591g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00143g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03591g" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR00562" sboTerm="SBO:0000176" id="MAR00562" name="Electron Transfer Flavoprotein" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00562" sboTerm="SBO:0000176" id="R_MAR00562" name="Electron Transfer Flavoprotein" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -375728,7 +375656,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00562">
+            <rdf:Description rdf:about="#R_MAR00562">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ETF"/>
@@ -375740,12 +375668,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01803m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03573m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01803m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03573m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01802m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03574m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01802m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03574m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:and>
@@ -375754,7 +375682,7 @@
           </fbc:and>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00563" sboTerm="SBO:0000176" id="MAR00563" name="Electron Transfer Flavoprotein-Ubiquinone Oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00563" sboTerm="SBO:0000176" id="R_MAR00563" name="Electron Transfer Flavoprotein-Ubiquinone Oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -375763,7 +375691,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00563">
+            <rdf:Description rdf:about="#R_MAR00563">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.5.5.1"/>
@@ -375776,15 +375704,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03103m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03574m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03103m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03574m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03102m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03573m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03102m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03573m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR00564" sboTerm="SBO:0000627" id="MAR00564" name="Exchange of 1 Acyl Phosphoglycerol" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00564" sboTerm="SBO:0000627" id="R_MAR00564" name="Exchange of 1 Acyl Phosphoglycerol" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -375792,7 +375720,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00564">
+            <rdf:Description rdf:about="#R_MAR00564">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_1glyc_hs_e"/>
@@ -375804,10 +375732,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01893e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01893e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR00565" sboTerm="SBO:0000627" id="MAR00565" name="Exchange of Fatty Acid 9-Cis-Retinol" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00565" sboTerm="SBO:0000627" id="R_MAR00565" name="Exchange of Fatty Acid 9-Cis-Retinol" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -375815,7 +375743,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00565">
+            <rdf:Description rdf:about="#R_MAR00565">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_9_cis_retfa_e"/>
@@ -375827,10 +375755,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03315e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03315e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR00566" sboTerm="SBO:0000627" id="MAR00566" name="Exchange of Adrenic Acid" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00566" sboTerm="SBO:0000627" id="R_MAR00566" name="Exchange of Adrenic Acid" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -375838,7 +375766,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00566">
+            <rdf:Description rdf:about="#R_MAR00566">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_adrn_e"/>
@@ -375850,10 +375778,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01291e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01291e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR00567" sboTerm="SBO:0000627" id="MAR00567" name="Exchange of Arachidate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00567" sboTerm="SBO:0000627" id="R_MAR00567" name="Exchange of Arachidate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -375861,7 +375789,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00567">
+            <rdf:Description rdf:about="#R_MAR00567">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_arach_e"/>
@@ -375873,10 +375801,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01771e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01771e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR00568" sboTerm="SBO:0000627" id="MAR00568" name="Exchange of Nc20:4" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00568" sboTerm="SBO:0000627" id="R_MAR00568" name="Exchange of Nc20:4" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -375884,7 +375812,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00568">
+            <rdf:Description rdf:about="#R_MAR00568">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_arachd_e"/>
@@ -375896,10 +375824,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01362e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01362e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR00569" sboTerm="SBO:0000627" id="MAR00569" name="Exchange of ATP" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00569" sboTerm="SBO:0000627" id="R_MAR00569" name="Exchange of ATP" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -375907,7 +375835,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00569">
+            <rdf:Description rdf:about="#R_MAR00569">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_atp_e"/>
@@ -375919,10 +375847,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR00570" sboTerm="SBO:0000627" id="MAR00570" name="Exchange of Beta-Tocopherol" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00570" sboTerm="SBO:0000627" id="R_MAR00570" name="Exchange of Beta-Tocopherol" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -375930,7 +375858,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00570">
+            <rdf:Description rdf:about="#R_MAR00570">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_bvite_e"/>
@@ -375942,10 +375870,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03484e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03484e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR00571" sboTerm="SBO:0000627" id="MAR00571" name="Exchange of Clupanodonic Acid (Docosapentaenoic (N-3))" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00571" sboTerm="SBO:0000627" id="R_MAR00571" name="Exchange of Clupanodonic Acid (Docosapentaenoic (N-3))" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -375953,7 +375881,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00571">
+            <rdf:Description rdf:about="#R_MAR00571">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_clpnd_e"/>
@@ -375965,10 +375893,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01741e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01741e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR00572" sboTerm="SBO:0000627" id="MAR00572" name="Exchange of Ceramide 1-Phosphate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00572" sboTerm="SBO:0000627" id="R_MAR00572" name="Exchange of Ceramide 1-Phosphate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -375976,7 +375904,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00572">
+            <rdf:Description rdf:about="#R_MAR00572">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_crmp_hs_e"/>
@@ -375988,10 +375916,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01431e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01431e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR00573" sboTerm="SBO:0000627" id="MAR00573" name="Exchange of Nc22:6" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00573" sboTerm="SBO:0000627" id="R_MAR00573" name="Exchange of Nc22:6" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -375999,7 +375927,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00573">
+            <rdf:Description rdf:about="#R_MAR00573">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_crvnc_e"/>
@@ -376011,10 +375939,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01689e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01689e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR00574" sboTerm="SBO:0000627" id="MAR00574" name="Exchange of Diglyceride" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00574" sboTerm="SBO:0000627" id="R_MAR00574" name="Exchange of Diglyceride" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -376022,7 +375950,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00574">
+            <rdf:Description rdf:about="#R_MAR00574">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_dag_hs_e"/>
@@ -376034,10 +375962,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00240e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00240e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR00575" sboTerm="SBO:0000627" id="MAR00575" name="Exchange of Docosa-4, 7, 10, 13, 16-Pentaenoic Acid (N-6)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00575" sboTerm="SBO:0000627" id="R_MAR00575" name="Exchange of Docosa-4, 7, 10, 13, 16-Pentaenoic Acid (N-6)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -376045,7 +375973,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00575">
+            <rdf:Description rdf:about="#R_MAR00575">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_dcsptn1_e"/>
@@ -376057,10 +375985,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00094e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00094e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR00576" sboTerm="SBO:0000627" id="MAR00576" name="Exchange of Dihomo-Gamma-Linolenic Acid (N-6)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00576" sboTerm="SBO:0000627" id="R_MAR00576" name="Exchange of Dihomo-Gamma-Linolenic Acid (N-6)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -376068,7 +375996,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00576">
+            <rdf:Description rdf:about="#R_MAR00576">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_dlnlcg_e"/>
@@ -376080,10 +376008,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01696e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01696e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR00577" sboTerm="SBO:0000627" id="MAR00577" name="Exchange of Eicosatetranoic Acid" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00577" sboTerm="SBO:0000627" id="R_MAR00577" name="Exchange of Eicosatetranoic Acid" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -376091,7 +376019,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00577">
+            <rdf:Description rdf:about="#R_MAR00577">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_eicostet_e"/>
@@ -376103,10 +376031,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02648e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02648e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR00583" sboTerm="SBO:0000627" id="MAR00583" name="Exchange of Elaidic Acid" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00583" sboTerm="SBO:0000627" id="R_MAR00583" name="Exchange of Elaidic Acid" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -376114,7 +376042,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00583">
+            <rdf:Description rdf:about="#R_MAR00583">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_elaid_e"/>
@@ -376126,10 +376054,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01778e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01778e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR00585" sboTerm="SBO:0000627" id="MAR00585" name="Exchange of Ley Glycolipid" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00585" sboTerm="SBO:0000627" id="R_MAR00585" name="Exchange of Ley Glycolipid" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -376137,7 +376065,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00585">
+            <rdf:Description rdf:about="#R_MAR00585">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_fucfuc12gal14acglcgalgluside_hs_e"/>
@@ -376149,10 +376077,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03577e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03577e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR00595" sboTerm="SBO:0000627" id="MAR00595" name="Exchange of Leb Glycolipid" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00595" sboTerm="SBO:0000627" id="R_MAR00595" name="Exchange of Leb Glycolipid" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -376160,7 +376088,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00595">
+            <rdf:Description rdf:about="#R_MAR00595">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_fucfucgalacglcgalgluside_hs_e"/>
@@ -376172,10 +376100,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03578e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03578e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR00603" sboTerm="SBO:0000627" id="MAR00603" name="Exchange of (S)-Glycerate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00603" sboTerm="SBO:0000627" id="R_MAR00603" name="Exchange of (S)-Glycerate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -376183,7 +376111,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00603">
+            <rdf:Description rdf:about="#R_MAR00603">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_glyc__S_e"/>
@@ -376195,10 +376123,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03620e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03620e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR00606" sboTerm="SBO:0000627" id="MAR00606" name="Exchange of Glycogen, Structure 2 (Glycogenin-1, 6-{7[1, 4-Glc], 4[1, 4-Glc]})" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00606" sboTerm="SBO:0000627" id="R_MAR00606" name="Exchange of Glycogen, Structure 2 (Glycogenin-1, 6-{7[1, 4-Glc], 4[1, 4-Glc]})" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -376206,7 +376134,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00606">
+            <rdf:Description rdf:about="#R_MAR00606">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_glygn2_e"/>
@@ -376218,10 +376146,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01992e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01992e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR00608" sboTerm="SBO:0000627" id="MAR00608" name="Exchange of Glycogen, Structure 4 (Glycogenin-1, 6-{2[1, 4-Glc], [1, 4-Glc]})" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00608" sboTerm="SBO:0000627" id="R_MAR00608" name="Exchange of Glycogen, Structure 4 (Glycogenin-1, 6-{2[1, 4-Glc], [1, 4-Glc]})" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -376229,7 +376157,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00608">
+            <rdf:Description rdf:about="#R_MAR00608">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_glygn4_e"/>
@@ -376241,10 +376169,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03622e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03622e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR00609" sboTerm="SBO:0000627" id="MAR00609" name="Exchange of Glycogen, Structure 5 (Glycogenin-2[1, 4-Glc])" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00609" sboTerm="SBO:0000627" id="R_MAR00609" name="Exchange of Glycogen, Structure 5 (Glycogenin-2[1, 4-Glc])" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -376252,7 +376180,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00609">
+            <rdf:Description rdf:about="#R_MAR00609">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_glygn5_e"/>
@@ -376264,10 +376192,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03623e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03623e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR00611" sboTerm="SBO:0000627" id="MAR00611" name="Exchange of Hexadecanoate (N-C16:0)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00611" sboTerm="SBO:0000627" id="R_MAR00611" name="Exchange of Hexadecanoate (N-C16:0)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -376275,7 +376203,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00611">
+            <rdf:Description rdf:about="#R_MAR00611">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_hdca_e"/>
@@ -376287,10 +376215,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02674e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02674e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR00617" sboTerm="SBO:0000627" id="MAR00617" name="Exchange of Hexadecenoate (N-C16:1)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00617" sboTerm="SBO:0000627" id="R_MAR00617" name="Exchange of Hexadecenoate (N-C16:1)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -376298,7 +376226,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00617">
+            <rdf:Description rdf:about="#R_MAR00617">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_hdcea_e"/>
@@ -376310,10 +376238,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02675e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02675e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR00618" sboTerm="SBO:0000627" id="MAR00618" name="Exchange of Hexacosanoate (N-C26:0)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00618" sboTerm="SBO:0000627" id="R_MAR00618" name="Exchange of Hexacosanoate (N-C26:0)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -376321,7 +376249,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00618">
+            <rdf:Description rdf:about="#R_MAR00618">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_hexc_e"/>
@@ -376333,10 +376261,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01432e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01432e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR00619" sboTerm="SBO:0000627" id="MAR00619" name="Exchange of Histamine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00619" sboTerm="SBO:0000627" id="R_MAR00619" name="Exchange of Histamine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -376344,7 +376272,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00619">
+            <rdf:Description rdf:about="#R_MAR00619">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_hista_e"/>
@@ -376356,10 +376284,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02124e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02124e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR00620" sboTerm="SBO:0000627" id="MAR00620" name="Exchange of Heptadecanoate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00620" sboTerm="SBO:0000627" id="R_MAR00620" name="Exchange of Heptadecanoate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -376367,7 +376295,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00620">
+            <rdf:Description rdf:about="#R_MAR00620">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_hpdca_e"/>
@@ -376379,10 +376307,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02456e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02456e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR00621" sboTerm="SBO:0000627" id="MAR00621" name="Exchange of Lignoceric Acid" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00621" sboTerm="SBO:0000627" id="R_MAR00621" name="Exchange of Lignoceric Acid" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -376390,7 +376318,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00621">
+            <rdf:Description rdf:about="#R_MAR00621">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_lgnc_e"/>
@@ -376402,10 +376330,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02385e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02385e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR00624" sboTerm="SBO:0000627" id="MAR00624" name="Exchange of Linoelaidic Acid" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00624" sboTerm="SBO:0000627" id="R_MAR00624" name="Exchange of Linoelaidic Acid" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -376413,7 +376341,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00624">
+            <rdf:Description rdf:about="#R_MAR00624">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_lneldc_e"/>
@@ -376425,10 +376353,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00104e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00104e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR00626" sboTerm="SBO:0000627" id="MAR00626" name="Exchange of Gamma-Linolenic Acid" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00626" sboTerm="SBO:0000627" id="R_MAR00626" name="Exchange of Gamma-Linolenic Acid" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -376436,7 +376364,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00626">
+            <rdf:Description rdf:about="#R_MAR00626">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_lnlncg_e"/>
@@ -376448,10 +376376,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01932e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01932e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR00628" sboTerm="SBO:0000627" id="MAR00628" name="Exchange of Lysophosphatidylcholine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00628" sboTerm="SBO:0000627" id="R_MAR00628" name="Exchange of Lysophosphatidylcholine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -376459,7 +376387,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00628">
+            <rdf:Description rdf:about="#R_MAR00628">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_lpchol_hs_e"/>
@@ -376471,10 +376399,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00656e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00656e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR00631" sboTerm="SBO:0000627" id="MAR00631" name="Exchange of Monoacylglycerol 2 (Homo Sapiens)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00631" sboTerm="SBO:0000627" id="R_MAR00631" name="Exchange of Monoacylglycerol 2 (Homo Sapiens)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -376482,7 +376410,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00631">
+            <rdf:Description rdf:about="#R_MAR00631">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_mag_hs_e"/>
@@ -376494,10 +376422,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM10006e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM10006e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR00637" sboTerm="SBO:0000627" id="MAR00637" name="Exchange of Nervonic Acid" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00637" sboTerm="SBO:0000627" id="R_MAR00637" name="Exchange of Nervonic Acid" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -376505,7 +376433,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00637">
+            <rdf:Description rdf:about="#R_MAR00637">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_nrvnc_e"/>
@@ -376517,10 +376445,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02564e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02564e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR00639" sboTerm="SBO:0000627" id="MAR00639" name="Exchange of Octadecanoate (N-C18:0)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00639" sboTerm="SBO:0000627" id="R_MAR00639" name="Exchange of Octadecanoate (N-C18:0)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -376528,7 +376456,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00639">
+            <rdf:Description rdf:about="#R_MAR00639">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_ocdca_e"/>
@@ -376540,10 +376468,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02938e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02938e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR00650" sboTerm="SBO:0000627" id="MAR00650" name="Exchange of Octadecenoate (N-C18:1)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00650" sboTerm="SBO:0000627" id="R_MAR00650" name="Exchange of Octadecenoate (N-C18:1)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -376551,7 +376479,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00650">
+            <rdf:Description rdf:about="#R_MAR00650">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_ocdcea_e"/>
@@ -376563,10 +376491,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02646e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02646e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR00655" sboTerm="SBO:0000627" id="MAR00655" name="Exchange of Phosphatidylcholine (Homo Sapiens)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00655" sboTerm="SBO:0000627" id="R_MAR00655" name="Exchange of Phosphatidylcholine (Homo Sapiens)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -376574,7 +376502,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00655">
+            <rdf:Description rdf:about="#R_MAR00655">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_pchol_hs_e"/>
@@ -376586,10 +376514,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02684e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02684e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR00656" sboTerm="SBO:0000627" id="MAR00656" name="Exchange of Phosphatidylethanolamine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00656" sboTerm="SBO:0000627" id="R_MAR00656" name="Exchange of Phosphatidylethanolamine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -376597,7 +376525,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00656">
+            <rdf:Description rdf:about="#R_MAR00656">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_pe_hs_e"/>
@@ -376609,10 +376537,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02685e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02685e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR00658" sboTerm="SBO:0000627" id="MAR00658" name="Exchange of Phosphatidylglycerol (Homo Sapiens)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00658" sboTerm="SBO:0000627" id="R_MAR00658" name="Exchange of Phosphatidylglycerol (Homo Sapiens)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -376620,7 +376548,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00658">
+            <rdf:Description rdf:about="#R_MAR00658">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_pglyc_hs_e"/>
@@ -376632,10 +376560,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02715e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02715e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR00659" sboTerm="SBO:0000627" id="MAR00659" name="Exchange of Phytanic Acid" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00659" sboTerm="SBO:0000627" id="R_MAR00659" name="Exchange of Phytanic Acid" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -376643,7 +376571,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00659">
+            <rdf:Description rdf:about="#R_MAR00659">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_phyt_e"/>
@@ -376655,10 +376583,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03884e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03884e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR00661" sboTerm="SBO:0000627" id="MAR00661" name="Exchange of Phosphatidylserine (Homo Sapiens)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00661" sboTerm="SBO:0000627" id="R_MAR00661" name="Exchange of Phosphatidylserine (Homo Sapiens)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -376666,7 +376594,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00661">
+            <rdf:Description rdf:about="#R_MAR00661">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_ps_hs_e"/>
@@ -376678,10 +376606,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02808e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02808e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR00662" sboTerm="SBO:0000627" id="MAR00662" name="Exchange of Pentadecanoate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00662" sboTerm="SBO:0000627" id="R_MAR00662" name="Exchange of Pentadecanoate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -376689,7 +376617,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00662">
+            <rdf:Description rdf:about="#R_MAR00662">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_ptdca_e"/>
@@ -376701,10 +376629,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02690e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02690e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR00666" sboTerm="SBO:0000627" id="MAR00666" name="Exchange of Fatty Acid Retinol" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00666" sboTerm="SBO:0000627" id="R_MAR00666" name="Exchange of Fatty Acid Retinol" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -376712,7 +376640,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00666">
+            <rdf:Description rdf:about="#R_MAR00666">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_retfa_e"/>
@@ -376724,10 +376652,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02838e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02838e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR00693" sboTerm="SBO:0000627" id="MAR00693" name="Exchange of 9-Cis-Retinol" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00693" sboTerm="SBO:0000627" id="R_MAR00693" name="Exchange of 9-Cis-Retinol" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -376735,7 +376663,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00693">
+            <rdf:Description rdf:about="#R_MAR00693">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_retinol_9_cis_e"/>
@@ -376747,10 +376675,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01232e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01232e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR00694" sboTerm="SBO:0000627" id="MAR00694" name="Exchange of Cis-11-Retinol" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00694" sboTerm="SBO:0000627" id="R_MAR00694" name="Exchange of Cis-11-Retinol" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -376758,7 +376686,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00694">
+            <rdf:Description rdf:about="#R_MAR00694">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_retinol_cis_11_e"/>
@@ -376770,10 +376698,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00291e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00291e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR00695" sboTerm="SBO:0000627" id="MAR00695" name="Exchange of Stearidonic Acid" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00695" sboTerm="SBO:0000627" id="R_MAR00695" name="Exchange of Stearidonic Acid" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -376781,7 +376709,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00695">
+            <rdf:Description rdf:about="#R_MAR00695">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_strdnc_e"/>
@@ -376793,10 +376721,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02939e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02939e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR00696" sboTerm="SBO:0000627" id="MAR00696" name="Exchange of Triacylglycerol (Homo Sapiens)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00696" sboTerm="SBO:0000627" id="R_MAR00696" name="Exchange of Triacylglycerol (Homo Sapiens)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -376804,7 +376732,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00696">
+            <rdf:Description rdf:about="#R_MAR00696">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_tag_hs_e"/>
@@ -376816,10 +376744,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02959e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02959e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR00697" sboTerm="SBO:0000627" id="MAR00697" name="Exchange of Tetracosahexaenoic Acid, N-3" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00697" sboTerm="SBO:0000627" id="R_MAR00697" name="Exchange of Tetracosahexaenoic Acid, N-3" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -376827,7 +376755,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00697">
+            <rdf:Description rdf:about="#R_MAR00697">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_tethex3_e"/>
@@ -376839,10 +376767,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00114e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00114e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR00698" sboTerm="SBO:0000627" id="MAR00698" name="Exchange of Tetracosapentaenoic Acid, N-3" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00698" sboTerm="SBO:0000627" id="R_MAR00698" name="Exchange of Tetracosapentaenoic Acid, N-3" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -376850,7 +376778,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00698">
+            <rdf:Description rdf:about="#R_MAR00698">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_tetpent3_e"/>
@@ -376862,10 +376790,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00135e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00135e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR00699" sboTerm="SBO:0000627" id="MAR00699" name="Exchange of Tetracosapentaenoic Acid, N-6" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00699" sboTerm="SBO:0000627" id="R_MAR00699" name="Exchange of Tetracosapentaenoic Acid, N-6" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -376873,7 +376801,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00699">
+            <rdf:Description rdf:about="#R_MAR00699">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_tetpent6_e"/>
@@ -376885,10 +376813,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00111e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00111e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR00700" sboTerm="SBO:0000627" id="MAR00700" name="Exchange of Tetracosatetraenoic Acid N-6" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00700" sboTerm="SBO:0000627" id="R_MAR00700" name="Exchange of Tetracosatetraenoic Acid N-6" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -376896,7 +376824,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00700">
+            <rdf:Description rdf:about="#R_MAR00700">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_tettet6_e"/>
@@ -376908,10 +376836,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00132e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00132e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR00701" sboTerm="SBO:0000627" id="MAR00701" name="Exchange of Timnodonic Acid" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00701" sboTerm="SBO:0000627" id="R_MAR00701" name="Exchange of Timnodonic Acid" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -376919,7 +376847,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00701">
+            <rdf:Description rdf:about="#R_MAR00701">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_tmndnc_e"/>
@@ -376931,10 +376859,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01784e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01784e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR00702" sboTerm="SBO:0000627" id="MAR00702" name="Exchange of Tetradecanoate (N-C14:0)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00702" sboTerm="SBO:0000627" id="R_MAR00702" name="Exchange of Tetradecanoate (N-C14:0)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -376942,7 +376870,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00702">
+            <rdf:Description rdf:about="#R_MAR00702">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_ttdca_e"/>
@@ -376954,10 +376882,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02494e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02494e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR00704" sboTerm="SBO:0000627" id="MAR00704" name="Exchange of Vaccenic Acid" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00704" sboTerm="SBO:0000627" id="R_MAR00704" name="Exchange of Vaccenic Acid" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -376965,7 +376893,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00704">
+            <rdf:Description rdf:about="#R_MAR00704">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_vacc_e"/>
@@ -376977,10 +376905,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01585e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01585e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR00711" sboTerm="SBO:0000627" id="MAR00711" name="Exchange of Cholesterol Ester" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00711" sboTerm="SBO:0000627" id="R_MAR00711" name="Exchange of Cholesterol Ester" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -376988,7 +376916,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00711">
+            <rdf:Description rdf:about="#R_MAR00711">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_xolest_hs_e"/>
@@ -377000,10 +376928,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM04081e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04081e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR00714" sboTerm="SBO:0000627" id="MAR00714" name="Exchange of Cholesterol Ester (from FullR2)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00714" sboTerm="SBO:0000627" id="R_MAR00714" name="Exchange of Cholesterol Ester (from FullR2)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -377011,7 +376939,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00714">
+            <rdf:Description rdf:about="#R_MAR00714">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_xolest2_hs_e"/>
@@ -377023,10 +376951,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01451e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01451e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR00720" sboTerm="SBO:0000627" id="MAR00720" name="Exchange of 7-Alpha, 24(S)-Dihydroxycholesterol" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00720" sboTerm="SBO:0000627" id="R_MAR00720" name="Exchange of 7-Alpha, 24(S)-Dihydroxycholesterol" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -377034,7 +376962,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00720">
+            <rdf:Description rdf:about="#R_MAR00720">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_xoltri24_e"/>
@@ -377046,10 +376974,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01446e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01446e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR00721" sboTerm="SBO:0000627" id="MAR00721" name="Exchange of 7-Alpha, 25-Dihydroxycholesterol" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00721" sboTerm="SBO:0000627" id="R_MAR00721" name="Exchange of 7-Alpha, 25-Dihydroxycholesterol" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -377057,7 +376985,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00721">
+            <rdf:Description rdf:about="#R_MAR00721">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_xoltri25_e"/>
@@ -377069,10 +376997,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01447e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01447e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR00722" sboTerm="SBO:0000627" id="MAR00722" name="Exchange of 7-Alpha, 27-Dihydroxycholesterol" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00722" sboTerm="SBO:0000627" id="R_MAR00722" name="Exchange of 7-Alpha, 27-Dihydroxycholesterol" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -377080,7 +377008,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00722">
+            <rdf:Description rdf:about="#R_MAR00722">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_xoltri27_e"/>
@@ -377092,10 +377020,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01448e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01448e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR00727" sboTerm="SBO:0000176" id="MAR00727" name="Fatty-Acyl-Acp Hydrolase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00727" sboTerm="SBO:0000176" id="R_MAR00727" name="Fatty-Acyl-Acp Hydrolase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -377104,7 +377032,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00727">
+            <rdf:Description rdf:about="#R_MAR00727">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.2.14"/>
@@ -377117,16 +377045,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03726c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03726c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00184c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02387c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00184c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02387c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR00728" sboTerm="SBO:0000176" id="MAR00728" name="Fatty-Acyl-Acp Hydrolase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00728" sboTerm="SBO:0000176" id="R_MAR00728" name="Fatty-Acyl-Acp Hydrolase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -377135,7 +377063,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00728">
+            <rdf:Description rdf:about="#R_MAR00728">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.2.14"/>
@@ -377148,16 +377076,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03725c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03725c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00104c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00184c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00104c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00184c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR00737" sboTerm="SBO:0000176" id="MAR00737" name="Fatty-Acid- Coenzyme A Ligase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00737" sboTerm="SBO:0000176" id="R_MAR00737" name="Fatty-Acid- Coenzyme A Ligase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -377166,7 +377094,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00737">
+            <rdf:Description rdf:about="#R_MAR00737">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.3"/>
@@ -377179,20 +377107,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01778c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01778c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00057c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01334c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00057c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG3961"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00739" sboTerm="SBO:0000176" id="MAR00739" name="Fatty-Acid- Coenzyme A Ligase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00739" sboTerm="SBO:0000176" id="R_MAR00739" name="Fatty-Acid- Coenzyme A Ligase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -377201,7 +377129,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00739">
+            <rdf:Description rdf:about="#R_MAR00739">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.3"/>
@@ -377214,20 +377142,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02766c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02766c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01334c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03887c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03887c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Fatp1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00740" sboTerm="SBO:0000176" id="MAR00740" name="Fatty-Acid- Coenzyme A Ligase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00740" sboTerm="SBO:0000176" id="R_MAR00740" name="Fatty-Acid- Coenzyme A Ligase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -377235,7 +377163,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00740">
+            <rdf:Description rdf:about="#R_MAR00740">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.3"/>
@@ -377248,20 +377176,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03884c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03884c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01334c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02747c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02747c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Fatp1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00743" sboTerm="SBO:0000176" id="MAR00743" name="Fatty-Acyl Coenzyme A Elongation (N-C18:3CoA)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00743" sboTerm="SBO:0000176" id="R_MAR00743" name="Fatty-Acyl Coenzyme A Elongation (N-C18:3CoA)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -377270,7 +377198,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00743">
+            <rdf:Description rdf:about="#R_MAR00743">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.86"/>
@@ -377283,21 +377211,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01934c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="5" constant="true"/>
-          <speciesReference species="MAM02444c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="4" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01934c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="5" constant="true"/>
+          <speciesReference species="M_MAM02444c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01596c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01697c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM01596c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01697c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="4" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR00745" sboTerm="SBO:0000176" id="MAR00745" name="Fatty-Acyl Coenzyme A Elongation (N-C20:4CoA)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00745" sboTerm="SBO:0000176" id="R_MAR00745" name="Fatty-Acyl Coenzyme A Elongation (N-C20:4CoA)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -377306,7 +377234,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00745">
+            <rdf:Description rdf:about="#R_MAR00745">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.86"/>
@@ -377319,21 +377247,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00108c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="5" constant="true"/>
-          <speciesReference species="MAM02444c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="4" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00108c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="5" constant="true"/>
+          <speciesReference species="M_MAM02444c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00125c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01596c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM00125c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01596c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="4" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR00747" sboTerm="SBO:0000176" id="MAR00747" name="Fatty-Acyl Coenzyme A Elongation (N-C20:4CoA)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00747" sboTerm="SBO:0000176" id="R_MAR00747" name="Fatty-Acyl Coenzyme A Elongation (N-C20:4CoA)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -377342,7 +377270,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00747">
+            <rdf:Description rdf:about="#R_MAR00747">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.86"/>
@@ -377355,21 +377283,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01364c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="5" constant="true"/>
-          <speciesReference species="MAM02444c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="4" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01364c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="5" constant="true"/>
+          <speciesReference species="M_MAM02444c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00119c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01596c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM00119c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01596c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="4" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR00749" sboTerm="SBO:0000176" id="MAR00749" name="Fatty-Acyl Coenzyme A Elongation (N-C20:5CoA)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00749" sboTerm="SBO:0000176" id="R_MAR00749" name="Fatty-Acyl Coenzyme A Elongation (N-C20:5CoA)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -377378,7 +377306,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00749">
+            <rdf:Description rdf:about="#R_MAR00749">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.86"/>
@@ -377391,21 +377319,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00103c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="5" constant="true"/>
-          <speciesReference species="MAM02444c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="4" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00103c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="5" constant="true"/>
+          <speciesReference species="M_MAM02444c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00121c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01596c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM00121c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01596c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="4" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR00751" sboTerm="SBO:0000176" id="MAR00751" name="Beta Oxidation of Long Chain Fatty Acid" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00751" sboTerm="SBO:0000176" id="R_MAR00751" name="Beta Oxidation of Long Chain Fatty Acid" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -377414,7 +377342,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00751">
+            <rdf:Description rdf:about="#R_MAR00751">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.99.3"/>
@@ -377427,22 +377355,22 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03554m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03554m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03553m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03553m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Mcad"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00752" sboTerm="SBO:0000176" id="MAR00752" name="Beta Oxidation of Long Chain Fatty Acid" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00752" sboTerm="SBO:0000176" id="R_MAR00752" name="Beta Oxidation of Long Chain Fatty Acid" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -377451,7 +377379,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00752">
+            <rdf:Description rdf:about="#R_MAR00752">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.99.3"/>
@@ -377464,17 +377392,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597m" stoichiometry="6" constant="true"/>
-          <speciesReference species="MAM01802m" stoichiometry="6" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="6" constant="true"/>
-          <speciesReference species="MAM02495m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="6" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="6" constant="true"/>
+          <speciesReference species="M_MAM01802m" stoichiometry="6" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="6" constant="true"/>
+          <speciesReference species="M_MAM02495m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="6" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261m" stoichiometry="7" constant="true"/>
-          <speciesReference species="MAM01803m" stoichiometry="6" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="6" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="6" constant="true"/>
+          <speciesReference species="M_MAM01261m" stoichiometry="7" constant="true"/>
+          <speciesReference species="M_MAM01803m" stoichiometry="6" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="6" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="6" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -377483,7 +377411,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00755" sboTerm="SBO:0000176" id="MAR00755" name="Beta Oxidation of Long Chain Fatty Acid (Odd Chain)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00755" sboTerm="SBO:0000176" id="R_MAR00755" name="Beta Oxidation of Long Chain Fatty Acid (Odd Chain)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -377492,7 +377420,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00755">
+            <rdf:Description rdf:about="#R_MAR00755">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.99.3"/>
@@ -377505,18 +377433,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597m" stoichiometry="6" constant="true"/>
-          <speciesReference species="MAM01802m" stoichiometry="6" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="6" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="6" constant="true"/>
-          <speciesReference species="MAM02689m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="6" constant="true"/>
+          <speciesReference species="M_MAM01802m" stoichiometry="6" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="6" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="6" constant="true"/>
+          <speciesReference species="M_MAM02689m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261m" stoichiometry="6" constant="true"/>
-          <speciesReference species="MAM01803m" stoichiometry="6" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="6" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="6" constant="true"/>
-          <speciesReference species="MAM02774m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261m" stoichiometry="6" constant="true"/>
+          <speciesReference species="M_MAM01803m" stoichiometry="6" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="6" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="6" constant="true"/>
+          <speciesReference species="M_MAM02774m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -377525,7 +377453,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00756" sboTerm="SBO:0000176" id="MAR00756" name="Beta Oxidation of Long Chain Fatty Acid" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00756" sboTerm="SBO:0000176" id="R_MAR00756" name="Beta Oxidation of Long Chain Fatty Acid" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -377534,7 +377462,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00756">
+            <rdf:Description rdf:about="#R_MAR00756">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.99.3"/>
@@ -377547,17 +377475,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597m" stoichiometry="7" constant="true"/>
-          <speciesReference species="MAM01802m" stoichiometry="7" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="7" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="7" constant="true"/>
-          <speciesReference species="MAM02678m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="7" constant="true"/>
+          <speciesReference species="M_MAM01802m" stoichiometry="7" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="7" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="7" constant="true"/>
+          <speciesReference species="M_MAM02678m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261m" stoichiometry="8" constant="true"/>
-          <speciesReference species="MAM01803m" stoichiometry="7" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="7" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="7" constant="true"/>
+          <speciesReference species="M_MAM01261m" stoichiometry="8" constant="true"/>
+          <speciesReference species="M_MAM01803m" stoichiometry="7" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="7" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="7" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -377566,7 +377494,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00757" sboTerm="SBO:0000176" id="MAR00757" name="Beta Oxidation of Long Chain Fatty Acid" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00757" sboTerm="SBO:0000176" id="R_MAR00757" name="Beta Oxidation of Long Chain Fatty Acid" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -377574,7 +377502,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00757">
+            <rdf:Description rdf:about="#R_MAR00757">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.74"/>
@@ -377587,18 +377515,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597m" stoichiometry="4" constant="true"/>
-          <speciesReference species="MAM01802m" stoichiometry="4" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="4" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="4" constant="true"/>
-          <speciesReference species="MAM02678m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM01802m" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM02678m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261m" stoichiometry="4" constant="true"/>
-          <speciesReference species="MAM01803m" stoichiometry="4" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="4" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="4" constant="true"/>
-          <speciesReference species="MAM02644m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261m" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM01803m" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM02644m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -377607,7 +377535,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00759" sboTerm="SBO:0000176" id="MAR00759" name="Beta Oxidation of Long Chain Fatty Acid" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00759" sboTerm="SBO:0000176" id="R_MAR00759" name="Beta Oxidation of Long Chain Fatty Acid" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -377615,7 +377543,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00759">
+            <rdf:Description rdf:about="#R_MAR00759">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.74"/>
@@ -377628,18 +377556,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597x" stoichiometry="4" constant="true"/>
-          <speciesReference species="MAM02040x" stoichiometry="4" constant="true"/>
-          <speciesReference species="MAM02552x" stoichiometry="4" constant="true"/>
-          <speciesReference species="MAM02630x" stoichiometry="4" constant="true"/>
-          <speciesReference species="MAM02678x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597x" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM02040x" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM02552x" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM02630x" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM02678x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261x" stoichiometry="4" constant="true"/>
-          <speciesReference species="MAM02039x" stoichiometry="4" constant="true"/>
-          <speciesReference species="MAM02041x" stoichiometry="4" constant="true"/>
-          <speciesReference species="MAM02553x" stoichiometry="4" constant="true"/>
-          <speciesReference species="MAM02644x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261x" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM02039x" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM02041x" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM02553x" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM02644x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -377651,7 +377579,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00764" sboTerm="SBO:0000176" id="MAR00764" name="Beta Oxidation Fatty Acid" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00764" sboTerm="SBO:0000176" id="R_MAR00764" name="Beta Oxidation Fatty Acid" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -377659,7 +377587,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00764">
+            <rdf:Description rdf:about="#R_MAR00764">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.74"/>
@@ -377672,18 +377600,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00051m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597m" stoichiometry="4" constant="true"/>
-          <speciesReference species="MAM01802m" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="4" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM00051m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM01802m" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="4" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261m" stoichiometry="4" constant="true"/>
-          <speciesReference species="MAM01803m" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="4" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="4" constant="true"/>
-          <speciesReference species="MAM02644m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261m" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM01803m" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM02644m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -377692,7 +377620,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00772" sboTerm="SBO:0000176" id="MAR00772" name="Beta Oxidation Fatty Acid" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00772" sboTerm="SBO:0000176" id="R_MAR00772" name="Beta Oxidation Fatty Acid" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -377700,7 +377628,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00772">
+            <rdf:Description rdf:about="#R_MAR00772">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.74"/>
@@ -377713,18 +377641,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597m" stoichiometry="4" constant="true"/>
-          <speciesReference species="MAM01802m" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="4" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="4" constant="true"/>
-          <speciesReference species="MAM02677m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM01802m" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM02677m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261m" stoichiometry="4" constant="true"/>
-          <speciesReference species="MAM01803m" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="4" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="4" constant="true"/>
-          <speciesReference species="MAM02644m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261m" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM01803m" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM02644m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -377733,7 +377661,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00774" sboTerm="SBO:0000176" id="MAR00774" name="Beta Oxidation of Long Chain Fatty Acid (Odd Chain)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00774" sboTerm="SBO:0000176" id="R_MAR00774" name="Beta Oxidation of Long Chain Fatty Acid (Odd Chain)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -377742,7 +377670,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00774">
+            <rdf:Description rdf:about="#R_MAR00774">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.99.3"/>
@@ -377755,24 +377683,24 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597m" stoichiometry="7" constant="true"/>
-          <speciesReference species="MAM01802m" stoichiometry="7" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="7" constant="true"/>
-          <speciesReference species="MAM02101m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="7" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="7" constant="true"/>
+          <speciesReference species="M_MAM01802m" stoichiometry="7" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="7" constant="true"/>
+          <speciesReference species="M_MAM02101m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="7" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261m" stoichiometry="7" constant="true"/>
-          <speciesReference species="MAM01803m" stoichiometry="7" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="7" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="7" constant="true"/>
-          <speciesReference species="MAM02774m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261m" stoichiometry="7" constant="true"/>
+          <speciesReference species="M_MAM01803m" stoichiometry="7" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="7" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="7" constant="true"/>
+          <speciesReference species="M_MAM02774m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Mcad"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00776" sboTerm="SBO:0000176" id="MAR00776" name="Beta Oxidation of Long Chain Fatty Acid" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00776" sboTerm="SBO:0000176" id="R_MAR00776" name="Beta Oxidation of Long Chain Fatty Acid" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -377781,7 +377709,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00776">
+            <rdf:Description rdf:about="#R_MAR00776">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.99.3"/>
@@ -377794,18 +377722,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01802m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02941m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01802m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02941m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01803m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02678m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01803m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02678m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -377814,7 +377742,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00777" sboTerm="SBO:0000176" id="MAR00777" name="Beta Oxidation of Long Chain Fatty Acid" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00777" sboTerm="SBO:0000176" id="R_MAR00777" name="Beta Oxidation of Long Chain Fatty Acid" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -377822,7 +377750,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00777">
+            <rdf:Description rdf:about="#R_MAR00777">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.16"/>
@@ -377835,18 +377763,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02941x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02941x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02041x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02678x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02678x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -377858,7 +377786,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00778" sboTerm="SBO:0000176" id="MAR00778" name="Beta Oxidation Fatty Acid" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00778" sboTerm="SBO:0000176" id="R_MAR00778" name="Beta Oxidation Fatty Acid" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -377866,7 +377794,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00778">
+            <rdf:Description rdf:about="#R_MAR00778">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.74"/>
@@ -377879,18 +377807,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00057m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597m" stoichiometry="5" constant="true"/>
-          <speciesReference species="MAM01802m" stoichiometry="4" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="5" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="5" constant="true"/>
+          <speciesReference species="M_MAM00057m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="5" constant="true"/>
+          <speciesReference species="M_MAM01802m" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="5" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="5" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261m" stoichiometry="5" constant="true"/>
-          <speciesReference species="MAM01803m" stoichiometry="4" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="5" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="5" constant="true"/>
-          <speciesReference species="MAM02644m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261m" stoichiometry="5" constant="true"/>
+          <speciesReference species="M_MAM01803m" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="5" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="5" constant="true"/>
+          <speciesReference species="M_MAM02644m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -377899,7 +377827,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00780" sboTerm="SBO:0000176" id="MAR00780" name="Beta Oxidation Fatty Acid" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00780" sboTerm="SBO:0000176" id="R_MAR00780" name="Beta Oxidation Fatty Acid" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -377907,7 +377835,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00780">
+            <rdf:Description rdf:about="#R_MAR00780">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.74"/>
@@ -377920,18 +377848,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597m" stoichiometry="5" constant="true"/>
-          <speciesReference species="MAM01802m" stoichiometry="4" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="5" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="5" constant="true"/>
-          <speciesReference species="MAM03791m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="5" constant="true"/>
+          <speciesReference species="M_MAM01802m" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="5" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="5" constant="true"/>
+          <speciesReference species="M_MAM03791m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261m" stoichiometry="5" constant="true"/>
-          <speciesReference species="MAM01803m" stoichiometry="4" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="5" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="5" constant="true"/>
-          <speciesReference species="MAM02644m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261m" stoichiometry="5" constant="true"/>
+          <speciesReference species="M_MAM01803m" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="5" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="5" constant="true"/>
+          <speciesReference species="M_MAM02644m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -377940,7 +377868,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00784" sboTerm="SBO:0000176" id="MAR00784" name="Beta Oxidation Fatty Acid" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00784" sboTerm="SBO:0000176" id="R_MAR00784" name="Beta Oxidation Fatty Acid" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -377948,7 +377876,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00784">
+            <rdf:Description rdf:about="#R_MAR00784">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.74"/>
@@ -377961,18 +377889,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597m" stoichiometry="5" constant="true"/>
-          <speciesReference species="MAM01802m" stoichiometry="4" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="5" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="5" constant="true"/>
-          <speciesReference species="MAM02647m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="5" constant="true"/>
+          <speciesReference species="M_MAM01802m" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="5" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="5" constant="true"/>
+          <speciesReference species="M_MAM02647m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261m" stoichiometry="5" constant="true"/>
-          <speciesReference species="MAM01803m" stoichiometry="4" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="5" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="5" constant="true"/>
-          <speciesReference species="MAM02644m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261m" stoichiometry="5" constant="true"/>
+          <speciesReference species="M_MAM01803m" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="5" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="5" constant="true"/>
+          <speciesReference species="M_MAM02644m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -377981,7 +377909,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00785" sboTerm="SBO:0000176" id="MAR00785" name="Beta Oxidation of Fatty Acid" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00785" sboTerm="SBO:0000176" id="R_MAR00785" name="Beta Oxidation of Fatty Acid" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -377989,7 +377917,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00785">
+            <rdf:Description rdf:about="#R_MAR00785">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.74"/>
@@ -378002,18 +377930,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597m" stoichiometry="5" constant="true"/>
-          <speciesReference species="MAM01802m" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="5" constant="true"/>
-          <speciesReference species="MAM02391m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="5" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="5" constant="true"/>
+          <speciesReference species="M_MAM01802m" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="5" constant="true"/>
+          <speciesReference species="M_MAM02391m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="5" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261m" stoichiometry="5" constant="true"/>
-          <speciesReference species="MAM01803m" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="5" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="5" constant="true"/>
-          <speciesReference species="MAM02644m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261m" stoichiometry="5" constant="true"/>
+          <speciesReference species="M_MAM01803m" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="5" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="5" constant="true"/>
+          <speciesReference species="M_MAM02644m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -378022,7 +377950,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00788" sboTerm="SBO:0000176" id="MAR00788" name="Beta Oxidation of Fatty Acid" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00788" sboTerm="SBO:0000176" id="R_MAR00788" name="Beta Oxidation of Fatty Acid" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -378030,7 +377958,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00788">
+            <rdf:Description rdf:about="#R_MAR00788">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.74"/>
@@ -378043,18 +377971,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00106m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597m" stoichiometry="5" constant="true"/>
-          <speciesReference species="MAM01802m" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="5" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="5" constant="true"/>
+          <speciesReference species="M_MAM00106m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="5" constant="true"/>
+          <speciesReference species="M_MAM01802m" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="5" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="5" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261m" stoichiometry="5" constant="true"/>
-          <speciesReference species="MAM01803m" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="5" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="5" constant="true"/>
-          <speciesReference species="MAM02644m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261m" stoichiometry="5" constant="true"/>
+          <speciesReference species="M_MAM01803m" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="5" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="5" constant="true"/>
+          <speciesReference species="M_MAM02644m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -378063,7 +377991,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00789" sboTerm="SBO:0000176" id="MAR00789" name="Beta Oxidation of Fatty Acid" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00789" sboTerm="SBO:0000176" id="R_MAR00789" name="Beta Oxidation of Fatty Acid" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -378071,7 +377999,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00789">
+            <rdf:Description rdf:about="#R_MAR00789">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.74"/>
@@ -378084,18 +378012,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597m" stoichiometry="5" constant="true"/>
-          <speciesReference species="MAM01802m" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="5" constant="true"/>
-          <speciesReference species="MAM02390m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="5" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="5" constant="true"/>
+          <speciesReference species="M_MAM01802m" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="5" constant="true"/>
+          <speciesReference species="M_MAM02390m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="5" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261m" stoichiometry="5" constant="true"/>
-          <speciesReference species="MAM01803m" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="5" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="5" constant="true"/>
-          <speciesReference species="MAM02644m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261m" stoichiometry="5" constant="true"/>
+          <speciesReference species="M_MAM01803m" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="5" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="5" constant="true"/>
+          <speciesReference species="M_MAM02644m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -378104,7 +378032,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00799" sboTerm="SBO:0000176" id="MAR00799" name="Beta Oxidation of Fatty Acid" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00799" sboTerm="SBO:0000176" id="R_MAR00799" name="Beta Oxidation of Fatty Acid" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -378112,7 +378040,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00799">
+            <rdf:Description rdf:about="#R_MAR00799">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.74"/>
@@ -378125,18 +378053,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597m" stoichiometry="5" constant="true"/>
-          <speciesReference species="MAM01934m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="5" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="5" constant="true"/>
-          <speciesReference species="MAM02630m" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="5" constant="true"/>
+          <speciesReference species="M_MAM01934m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="5" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="5" constant="true"/>
+          <speciesReference species="M_MAM02630m" stoichiometry="2" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261m" stoichiometry="5" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="5" constant="true"/>
-          <speciesReference species="MAM02041m" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="5" constant="true"/>
-          <speciesReference species="MAM02644m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261m" stoichiometry="5" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="5" constant="true"/>
+          <speciesReference species="M_MAM02041m" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="5" constant="true"/>
+          <speciesReference species="M_MAM02644m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -378145,7 +378073,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00800" sboTerm="SBO:0000176" id="MAR00800" name="Beta Oxidation of Long Chain Fatty Acid" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00800" sboTerm="SBO:0000176" id="R_MAR00800" name="Beta Oxidation of Long Chain Fatty Acid" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -378153,7 +378081,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00800">
+            <rdf:Description rdf:about="#R_MAR00800">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.74"/>
@@ -378166,18 +378094,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597x" stoichiometry="5" constant="true"/>
-          <speciesReference species="MAM01934x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040x" stoichiometry="5" constant="true"/>
-          <speciesReference species="MAM02552x" stoichiometry="5" constant="true"/>
-          <speciesReference species="MAM02630x" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01597x" stoichiometry="5" constant="true"/>
+          <speciesReference species="M_MAM01934x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040x" stoichiometry="5" constant="true"/>
+          <speciesReference species="M_MAM02552x" stoichiometry="5" constant="true"/>
+          <speciesReference species="M_MAM02630x" stoichiometry="2" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261x" stoichiometry="5" constant="true"/>
-          <speciesReference species="MAM02039x" stoichiometry="5" constant="true"/>
-          <speciesReference species="MAM02041x" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02553x" stoichiometry="5" constant="true"/>
-          <speciesReference species="MAM02644x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261x" stoichiometry="5" constant="true"/>
+          <speciesReference species="M_MAM02039x" stoichiometry="5" constant="true"/>
+          <speciesReference species="M_MAM02041x" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02553x" stoichiometry="5" constant="true"/>
+          <speciesReference species="M_MAM02644x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -378189,7 +378117,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00818" sboTerm="SBO:0000176" id="MAR00818" name="Beta Oxidation of Fatty Acid" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00818" sboTerm="SBO:0000176" id="R_MAR00818" name="Beta Oxidation of Fatty Acid" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -378197,7 +378125,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00818">
+            <rdf:Description rdf:about="#R_MAR00818">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.74"/>
@@ -378210,18 +378138,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00108m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597m" stoichiometry="5" constant="true"/>
-          <speciesReference species="MAM01802m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="5" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="5" constant="true"/>
+          <speciesReference species="M_MAM00108m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="5" constant="true"/>
+          <speciesReference species="M_MAM01802m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="5" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="5" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261m" stoichiometry="5" constant="true"/>
-          <speciesReference species="MAM01803m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="5" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="5" constant="true"/>
-          <speciesReference species="MAM02644m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261m" stoichiometry="5" constant="true"/>
+          <speciesReference species="M_MAM01803m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="5" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="5" constant="true"/>
+          <speciesReference species="M_MAM02644m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -378230,7 +378158,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00833" sboTerm="SBO:0000176" id="MAR00833" name="Beta Oxidation of Long Chain Fatty Acid" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00833" sboTerm="SBO:0000176" id="R_MAR00833" name="Beta Oxidation of Long Chain Fatty Acid" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -378238,7 +378166,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00833">
+            <rdf:Description rdf:about="#R_MAR00833">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.74"/>
@@ -378251,18 +378179,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597x" stoichiometry="5" constant="true"/>
-          <speciesReference species="MAM02040x" stoichiometry="5" constant="true"/>
-          <speciesReference species="MAM02552x" stoichiometry="5" constant="true"/>
-          <speciesReference species="MAM02630x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00108x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597x" stoichiometry="5" constant="true"/>
+          <speciesReference species="M_MAM02040x" stoichiometry="5" constant="true"/>
+          <speciesReference species="M_MAM02552x" stoichiometry="5" constant="true"/>
+          <speciesReference species="M_MAM02630x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00108x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261x" stoichiometry="5" constant="true"/>
-          <speciesReference species="MAM02039x" stoichiometry="5" constant="true"/>
-          <speciesReference species="MAM02041x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553x" stoichiometry="5" constant="true"/>
-          <speciesReference species="MAM02644x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261x" stoichiometry="5" constant="true"/>
+          <speciesReference species="M_MAM02039x" stoichiometry="5" constant="true"/>
+          <speciesReference species="M_MAM02041x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553x" stoichiometry="5" constant="true"/>
+          <speciesReference species="M_MAM02644x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -378274,7 +378202,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00869" sboTerm="SBO:0000176" id="MAR00869" name="Beta Oxidation of Long Chain Fatty Acid" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00869" sboTerm="SBO:0000176" id="R_MAR00869" name="Beta Oxidation of Long Chain Fatty Acid" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -378282,7 +378210,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00869">
+            <rdf:Description rdf:about="#R_MAR00869">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.74"/>
@@ -378295,18 +378223,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01773m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01802m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01773m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01802m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01803m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02941m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01803m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02941m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -378315,7 +378243,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00872" sboTerm="SBO:0000176" id="MAR00872" name="Beta Oxidation of Long Chain Fatty Acid" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00872" sboTerm="SBO:0000176" id="R_MAR00872" name="Beta Oxidation of Long Chain Fatty Acid" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -378323,7 +378251,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00872">
+            <rdf:Description rdf:about="#R_MAR00872">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.74"/>
@@ -378336,18 +378264,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01773x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01773x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02041x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02941x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02941x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -378359,7 +378287,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00874" sboTerm="SBO:0000176" id="MAR00874" name="Beta Oxidation of Fatty Acid" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00874" sboTerm="SBO:0000176" id="R_MAR00874" name="Beta Oxidation of Fatty Acid" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -378367,7 +378295,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00874">
+            <rdf:Description rdf:about="#R_MAR00874">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.74"/>
@@ -378380,18 +378308,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01697m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01802m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01697m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01802m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01803m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01934m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01803m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01934m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -378400,7 +378328,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00916" sboTerm="SBO:0000176" id="MAR00916" name="Beta Oxidation of Long Chain Fatty Acid" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00916" sboTerm="SBO:0000176" id="R_MAR00916" name="Beta Oxidation of Long Chain Fatty Acid" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -378409,7 +378337,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00916">
+            <rdf:Description rdf:about="#R_MAR00916">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.99.3"/>
@@ -378422,17 +378350,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01364m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597m" stoichiometry="9" constant="true"/>
-          <speciesReference species="MAM01802m" stoichiometry="5" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="9" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="9" constant="true"/>
+          <speciesReference species="M_MAM01364m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="9" constant="true"/>
+          <speciesReference species="M_MAM01802m" stoichiometry="5" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="9" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="9" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261m" stoichiometry="10" constant="true"/>
-          <speciesReference species="MAM01803m" stoichiometry="5" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="9" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="9" constant="true"/>
+          <speciesReference species="M_MAM01261m" stoichiometry="10" constant="true"/>
+          <speciesReference species="M_MAM01803m" stoichiometry="5" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="9" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="9" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -378441,7 +378369,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00922" sboTerm="SBO:0000176" id="MAR00922" name="Beta Oxidation Fatty Acid" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00922" sboTerm="SBO:0000176" id="R_MAR00922" name="Beta Oxidation Fatty Acid" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -378449,7 +378377,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00922">
+            <rdf:Description rdf:about="#R_MAR00922">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.74"/>
@@ -378462,18 +378390,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00125m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01802m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00125m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01802m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00108m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01261m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01803m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00108m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01803m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -378482,7 +378410,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00923" sboTerm="SBO:0000176" id="MAR00923" name="Beta Oxidation of Fatty Acid" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00923" sboTerm="SBO:0000176" id="R_MAR00923" name="Beta Oxidation of Fatty Acid" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -378490,7 +378418,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00923">
+            <rdf:Description rdf:about="#R_MAR00923">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.74"/>
@@ -378503,16 +378431,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00103m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00103m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00108m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01261m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00108m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -378521,7 +378449,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00927" sboTerm="SBO:0000176" id="MAR00927" name="Beta Oxidation of Long Chain Fatty Acid" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00927" sboTerm="SBO:0000176" id="R_MAR00927" name="Beta Oxidation of Long Chain Fatty Acid" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -378529,7 +378457,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00927">
+            <rdf:Description rdf:about="#R_MAR00927">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.74"/>
@@ -378542,16 +378470,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00103x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00103x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00108x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00108x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -378563,7 +378491,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00930" sboTerm="SBO:0000176" id="MAR00930" name="Beta Oxidation of Long Chain Fatty Acid" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00930" sboTerm="SBO:0000176" id="R_MAR00930" name="Beta Oxidation of Long Chain Fatty Acid" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -378571,7 +378499,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00930">
+            <rdf:Description rdf:about="#R_MAR00930">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.74"/>
@@ -378584,18 +378512,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00119m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01802m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00119m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01802m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01364m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01803m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01364m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01803m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -378604,7 +378532,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00952" sboTerm="SBO:0000176" id="MAR00952" name="Beta Oxidation of Long Chain Fatty Acid" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00952" sboTerm="SBO:0000176" id="R_MAR00952" name="Beta Oxidation of Long Chain Fatty Acid" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -378612,7 +378540,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00952">
+            <rdf:Description rdf:about="#R_MAR00952">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.74"/>
@@ -378625,18 +378553,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00119x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00119x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01364x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02041x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01364x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -378648,7 +378576,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00965" sboTerm="SBO:0000176" id="MAR00965" name="Beta Oxidation of Long Chain Fatty Acid" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00965" sboTerm="SBO:0000176" id="R_MAR00965" name="Beta Oxidation of Long Chain Fatty Acid" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -378656,7 +378584,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00965">
+            <rdf:Description rdf:about="#R_MAR00965">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.74"/>
@@ -378669,18 +378597,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00093m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00093m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00103m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01261m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02041m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00103m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -378689,7 +378617,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00968" sboTerm="SBO:0000176" id="MAR00968" name="Beta Oxidation of Long Chain Fatty Acid" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00968" sboTerm="SBO:0000176" id="R_MAR00968" name="Beta Oxidation of Long Chain Fatty Acid" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -378697,7 +378625,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00968">
+            <rdf:Description rdf:about="#R_MAR00968">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.74"/>
@@ -378710,18 +378638,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00093x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00093x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02041x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00103x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00103x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -378733,7 +378661,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00970" sboTerm="SBO:0000176" id="MAR00970" name="Beta Oxidation of Long Chain Fatty Acid" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00970" sboTerm="SBO:0000176" id="R_MAR00970" name="Beta Oxidation of Long Chain Fatty Acid" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -378742,7 +378670,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00970">
+            <rdf:Description rdf:about="#R_MAR00970">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.74"/>
@@ -378755,16 +378683,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00095m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00095m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00103m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01261m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00103m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -378773,7 +378701,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00972" sboTerm="SBO:0000176" id="MAR00972" name="Beta Oxidation of Long Chain Fatty Acid" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00972" sboTerm="SBO:0000176" id="R_MAR00972" name="Beta Oxidation of Long Chain Fatty Acid" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -378781,7 +378709,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00972">
+            <rdf:Description rdf:about="#R_MAR00972">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.74"/>
@@ -378794,16 +378722,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00095x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00095x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00103x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00103x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -378815,7 +378743,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00974" sboTerm="SBO:0000176" id="MAR00974" name="Beta Oxidation of Long Chain Fatty Acid" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00974" sboTerm="SBO:0000176" id="R_MAR00974" name="Beta Oxidation of Long Chain Fatty Acid" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -378823,7 +378751,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00974">
+            <rdf:Description rdf:about="#R_MAR00974">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.74"/>
@@ -378836,18 +378764,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597x" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02040x" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02552x" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02630x" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02971x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597x" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02040x" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02552x" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02630x" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02971x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261x" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM01773x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039x" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02041x" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02553x" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01261x" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01773x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039x" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02041x" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02553x" stoichiometry="2" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -378859,7 +378787,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00975" sboTerm="SBO:0000176" id="MAR00975" name="Beta Oxidation of Long Chain Fatty Acid" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00975" sboTerm="SBO:0000176" id="R_MAR00975" name="Beta Oxidation of Long Chain Fatty Acid" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -378867,7 +378795,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00975">
+            <rdf:Description rdf:about="#R_MAR00975">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.74"/>
@@ -378880,18 +378808,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00025x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597x" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM02040x" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM02552x" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM02630x" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM00025x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597x" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM02040x" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM02552x" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM02630x" stoichiometry="3" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261x" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM02039x" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM02041x" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM02553x" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM02647x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261x" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM02039x" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM02041x" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM02553x" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM02647x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -378903,7 +378831,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00977" sboTerm="SBO:0000176" id="MAR00977" name="Beta Oxidation of Long Chain Fatty Acid" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00977" sboTerm="SBO:0000176" id="R_MAR00977" name="Beta Oxidation of Long Chain Fatty Acid" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -378911,7 +378839,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00977">
+            <rdf:Description rdf:about="#R_MAR00977">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.74"/>
@@ -378924,18 +378852,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00131x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00131x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02041x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00119x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00119x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -378947,7 +378875,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00978" sboTerm="SBO:0000176" id="MAR00978" name="Beta Oxidation of Long Chain Fatty Acid" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00978" sboTerm="SBO:0000176" id="R_MAR00978" name="Beta Oxidation of Long Chain Fatty Acid" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -378955,7 +378883,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00978">
+            <rdf:Description rdf:about="#R_MAR00978">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.74"/>
@@ -378968,18 +378896,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00134x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00134x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02041x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00121x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00121x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -378991,7 +378919,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00982" sboTerm="SBO:0000176" id="MAR00982" name="Beta Oxidation of Long Chain Fatty Acid" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00982" sboTerm="SBO:0000176" id="R_MAR00982" name="Beta Oxidation of Long Chain Fatty Acid" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -378999,7 +378927,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00982">
+            <rdf:Description rdf:about="#R_MAR00982">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.74"/>
@@ -379012,18 +378940,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00110x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00110x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00093x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01261x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02041x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00093x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -379035,7 +378963,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01001" sboTerm="SBO:0000176" id="MAR01001" name="Beta Oxidation of Long Chain Fatty Acid" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01001" sboTerm="SBO:0000176" id="R_MAR01001" name="Beta Oxidation of Long Chain Fatty Acid" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -379043,7 +378971,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01001">
+            <rdf:Description rdf:about="#R_MAR01001">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.74"/>
@@ -379056,18 +378984,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00113x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00113x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00095x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01261x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02041x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00095x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -379079,7 +379007,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01005" sboTerm="SBO:0000176" id="MAR01005" name="Beta Oxidation of Long Chain Fatty Acid" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01005" sboTerm="SBO:0000176" id="R_MAR01005" name="Beta Oxidation of Long Chain Fatty Acid" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -379087,7 +379015,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01005">
+            <rdf:Description rdf:about="#R_MAR01005">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.74"/>
@@ -379100,18 +379028,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02110x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02110x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02041x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02971x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02971x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -379123,7 +379051,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01009" sboTerm="SBO:0000176" id="MAR01009" name="Beta Oxidation of Med/Long Chain Fatty Acid" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01009" sboTerm="SBO:0000176" id="R_MAR01009" name="Beta Oxidation of Med/Long Chain Fatty Acid" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -379132,7 +379060,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01009">
+            <rdf:Description rdf:about="#R_MAR01009">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.99.3"/>
@@ -379145,17 +379073,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597m" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM01802m" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM02644m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM01802m" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM02644m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261m" stoichiometry="4" constant="true"/>
-          <speciesReference species="MAM01803m" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM01261m" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM01803m" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="3" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -379164,7 +379092,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01012" sboTerm="SBO:0000176" id="MAR01012" name="Fatty Acyl Coenzyme A Synthase (N-C10:0CoA)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01012" sboTerm="SBO:0000176" id="R_MAR01012" name="Fatty Acyl Coenzyme A Synthase (N-C10:0CoA)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -379173,7 +379101,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01012">
+            <rdf:Description rdf:about="#R_MAR01012">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.86"/>
@@ -379186,20 +379114,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM02444c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02644c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM02444c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02644c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01596c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01650c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01596c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01650c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="2" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01019" sboTerm="SBO:0000176" id="MAR01019" name="Fatty-Acyl Coenzyme A Synthase (N-C12:0CoA)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01019" sboTerm="SBO:0000176" id="R_MAR01019" name="Fatty-Acyl Coenzyme A Synthase (N-C12:0CoA)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -379208,7 +379136,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01019">
+            <rdf:Description rdf:about="#R_MAR01019">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.86"/>
@@ -379221,20 +379149,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01650c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM02444c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01650c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM02444c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="2" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01596c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02345c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01596c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02345c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="2" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01024" sboTerm="SBO:0000176" id="MAR01024" name="Fatty-Acyl Coenzyme A Synthase (N-C14:0CoA)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01024" sboTerm="SBO:0000176" id="R_MAR01024" name="Fatty-Acyl Coenzyme A Synthase (N-C14:0CoA)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -379243,7 +379171,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01024">
+            <rdf:Description rdf:about="#R_MAR01024">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.86"/>
@@ -379256,20 +379184,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM02345c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02444c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM02345c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02444c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="2" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01596c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02495c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01596c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02495c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="2" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01031" sboTerm="SBO:0000176" id="MAR01031" name="Fatty-Acyl Coenzyme A Synthase (N-C16:0CoA)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01031" sboTerm="SBO:0000176" id="R_MAR01031" name="Fatty-Acyl Coenzyme A Synthase (N-C16:0CoA)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -379278,7 +379206,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01031">
+            <rdf:Description rdf:about="#R_MAR01031">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.86"/>
@@ -379291,20 +379219,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM02444c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02495c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM02444c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02495c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="2" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01596c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02678c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01596c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02678c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01032" sboTerm="SBO:0000176" id="MAR01032" name="Fatty-Acyl Coenzyme A Synthase (N-C18:0CoA)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01032" sboTerm="SBO:0000176" id="R_MAR01032" name="Fatty-Acyl Coenzyme A Synthase (N-C18:0CoA)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -379313,7 +379241,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01032">
+            <rdf:Description rdf:about="#R_MAR01032">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.86"/>
@@ -379326,20 +379254,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM02444c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02678c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM02444c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02678c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01596c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02941c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01596c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02941c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01036" sboTerm="SBO:0000176" id="MAR01036" name="Fatty Acyl Coenzyme A Synthase (N-C8:0CoA), Lumped Reaction" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01036" sboTerm="SBO:0000176" id="R_MAR01036" name="Fatty Acyl Coenzyme A Synthase (N-C8:0CoA), Lumped Reaction" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -379348,7 +379276,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01036">
+            <rdf:Description rdf:about="#R_MAR01036">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.86"/>
@@ -379361,23 +379289,23 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01261c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="9" constant="true"/>
-          <speciesReference species="MAM02444c" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="6" constant="true"/>
+          <speciesReference species="M_MAM01261c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="9" constant="true"/>
+          <speciesReference species="M_MAM02444c" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="6" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01596c" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="6" constant="true"/>
-          <speciesReference species="MAM02644c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01596c" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="6" constant="true"/>
+          <speciesReference species="M_MAM02644c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="FASN1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01038" sboTerm="SBO:0000176" id="MAR01038" name="D-Tagatose 1-Phosphate D-Glyceraldehyde-3-Phosphate-Lyase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01038" sboTerm="SBO:0000176" id="R_MAR01038" name="D-Tagatose 1-Phosphate D-Glyceraldehyde-3-Phosphate-Lyase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -379386,7 +379314,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01038">
+            <rdf:Description rdf:about="#R_MAR01038">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.1.2.13"/>
@@ -379399,17 +379327,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03960c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03960c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01690c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01981c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01690c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01981c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Ald1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01044" sboTerm="SBO:0000176" id="MAR01044" name="Ferrochelatase, Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01044" sboTerm="SBO:0000176" id="R_MAR01044" name="Ferrochelatase, Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -379418,7 +379346,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01044">
+            <rdf:Description rdf:about="#R_MAR01044">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.99.1.1"/>
@@ -379434,18 +379362,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01821m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02803m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01821m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02803m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039m" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02049m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02049m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="FeCH"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01046" sboTerm="SBO:0000185" id="MAR01046" name="Transport of Iron (Fe2+), Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01046" sboTerm="SBO:0000185" id="R_MAR01046" name="Transport of Iron (Fe2+), Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -379454,7 +379382,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01046">
+            <rdf:Description rdf:about="#R_MAR01046">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FE2tm"/>
@@ -379466,15 +379394,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01821c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039i" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01821c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039i" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01821m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01821m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01047" sboTerm="SBO:0000185" id="MAR01047" name="Folate Transport via Anion Antiport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01047" sboTerm="SBO:0000185" id="R_MAR01047" name="Folate Transport via Anion Antiport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -379483,7 +379411,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01047">
+            <rdf:Description rdf:about="#R_MAR01047">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.3.11"/>
@@ -379496,12 +379424,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01830e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01830e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01830c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01830c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -379510,7 +379438,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01051" sboTerm="SBO:0000185" id="MAR01051" name="Lipid, Flip-Flop Intracellular Transport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01051" sboTerm="SBO:0000185" id="R_MAR01051" name="Lipid, Flip-Flop Intracellular Transport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -379519,7 +379447,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01051">
+            <rdf:Description rdf:about="#R_MAR01051">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.3.2.17"/>
@@ -379532,13 +379460,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01806x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01806x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01806c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01806c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01052" sboTerm="SBO:0000185" id="MAR01052" name="Lipid, Flip-Flop Intracellular Transport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01052" sboTerm="SBO:0000185" id="R_MAR01052" name="Lipid, Flip-Flop Intracellular Transport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -379547,7 +379475,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01052">
+            <rdf:Description rdf:about="#R_MAR01052">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.3.2.17"/>
@@ -379560,13 +379488,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01806x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01806x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01806r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01806r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01056" sboTerm="SBO:0000185" id="MAR01056" name="Blood Group Intracellular Transport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01056" sboTerm="SBO:0000185" id="R_MAR01056" name="Blood Group Intracellular Transport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -379574,7 +379502,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01056">
+            <rdf:Description rdf:about="#R_MAR01056">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FUCFUC12GAL14ACGLCGALGLUSIDEte"/>
@@ -379586,13 +379514,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03577e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03577e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03577c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03577c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01060" sboTerm="SBO:0000185" id="MAR01060" name="Blood Group Intracellular Transport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01060" sboTerm="SBO:0000185" id="R_MAR01060" name="Blood Group Intracellular Transport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -379600,7 +379528,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01060">
+            <rdf:Description rdf:about="#R_MAR01060">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FUCFUC12GAL14ACGLCGALGLUSIDEtg"/>
@@ -379612,13 +379540,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03577g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03577g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03577c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03577c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01076" sboTerm="SBO:0000185" id="MAR01076" name="Blood Group Intracellular Transport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01076" sboTerm="SBO:0000185" id="R_MAR01076" name="Blood Group Intracellular Transport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -379626,7 +379554,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01076">
+            <rdf:Description rdf:about="#R_MAR01076">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FUCFUCGALACGLCGALGLUSIDEte"/>
@@ -379638,13 +379566,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03578e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03578e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03578c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03578c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01078" sboTerm="SBO:0000185" id="MAR01078" name="Blood Group Intracellular Transport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01078" sboTerm="SBO:0000185" id="R_MAR01078" name="Blood Group Intracellular Transport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -379652,7 +379580,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01078">
+            <rdf:Description rdf:about="#R_MAR01078">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.2.1.51"/>
@@ -379665,13 +379593,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03578g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03578g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03578c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03578c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01118" sboTerm="SBO:0000176" id="MAR01118" name="Fucosyltransferase 3 (Galactoside 3 (4)-L-Fucosyltransferase, Lewis Blood Group Included) 1" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01118" sboTerm="SBO:0000176" id="R_MAR01118" name="Fucosyltransferase 3 (Galactoside 3 (4)-L-Fucosyltransferase, Lewis Blood Group Included) 1" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -379680,7 +379608,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01118">
+            <rdf:Description rdf:about="#R_MAR01118">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.65"/>
@@ -379693,19 +379621,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01950g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03092g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01950g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03092g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01948g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03578g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01948g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03578g" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="FucTA"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01141" sboTerm="SBO:0000176" id="MAR01141" name="Alpha- (1, 3)-Fucosyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01141" sboTerm="SBO:0000176" id="R_MAR01141" name="Alpha- (1, 3)-Fucosyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -379714,7 +379642,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01141">
+            <rdf:Description rdf:about="#R_MAR01141">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.152"/>
@@ -379727,19 +379655,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01950g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03095g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01950g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03095g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01948g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03577g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01948g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03577g" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="FucTA"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01169" sboTerm="SBO:0000176" id="MAR01169" name="Glycerol-3-Phosphate Dehydrogenase (FAD), Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01169" sboTerm="SBO:0000176" id="R_MAR01169" name="Glycerol-3-Phosphate Dehydrogenase (FAD), Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -379748,7 +379676,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01169">
+            <rdf:Description rdf:about="#R_MAR01169">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.99.5"/>
@@ -379761,18 +379689,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01802m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02914c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01802m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02914c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01690c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01803m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01690c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01803m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Gpo1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01314" sboTerm="SBO:0000185" id="MAR01314" name="GABA Secretion via Secretory Vesicle (ATP Driven)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01314" sboTerm="SBO:0000185" id="R_MAR01314" name="GABA Secretion via Secretory Vesicle (ATP Driven)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -379781,7 +379709,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01314">
+            <rdf:Description rdf:about="#R_MAR01314">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GABAVESSEC"/>
@@ -379793,21 +379721,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00970c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00970c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00970e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00970e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="VGAT"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01340" sboTerm="SBO:0000176" id="MAR01340" name="Blood Group Intracellular Transport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01340" sboTerm="SBO:0000176" id="R_MAR01340" name="Blood Group Intracellular Transport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -379815,7 +379743,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01340">
+            <rdf:Description rdf:about="#R_MAR01340">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.2.1.23"/>
@@ -379828,13 +379756,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01915g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01915g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01884c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01884c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01348" sboTerm="SBO:0000185" id="MAR01348" name="Transport of Galactosyl Glucosyl Ceramide" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01348" sboTerm="SBO:0000185" id="R_MAR01348" name="Transport of Galactosyl Glucosyl Ceramide" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -379842,7 +379770,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01348">
+            <rdf:Description rdf:about="#R_MAR01348">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.2.1.23"/>
@@ -379855,13 +379783,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03586c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03586c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03586g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03586g" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01349" sboTerm="SBO:0000185" id="MAR01349" name="Transport of Galactosyl Glucosyl Ceramide" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01349" sboTerm="SBO:0000185" id="R_MAR01349" name="Transport of Galactosyl Glucosyl Ceramide" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -379869,7 +379797,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01349">
+            <rdf:Description rdf:about="#R_MAR01349">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.2.1.23"/>
@@ -379882,13 +379810,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03586c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03586c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03586l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03586l" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01353" sboTerm="SBO:0000176" id="MAR01353" name="Galnac Transferase, Golgi Apparatus" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01353" sboTerm="SBO:0000176" id="R_MAR01353" name="Galnac Transferase, Golgi Apparatus" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -379897,7 +379825,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01353">
+            <rdf:Description rdf:about="#R_MAR01353">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.41"/>
@@ -379910,13 +379838,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03110g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03395g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03110g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03395g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03000g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03000g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106g" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -379930,7 +379858,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01354" sboTerm="SBO:0000185" id="MAR01354" name="Bile Acid Intracellular Transport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01354" sboTerm="SBO:0000185" id="R_MAR01354" name="Bile Acid Intracellular Transport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -379938,7 +379866,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01354">
+            <rdf:Description rdf:about="#R_MAR01354">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.88"/>
@@ -379951,13 +379879,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01988e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01988e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01988c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01988c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01368" sboTerm="SBO:0000185" id="MAR01368" name="Bile Acid Intracellular Transport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01368" sboTerm="SBO:0000185" id="R_MAR01368" name="Bile Acid Intracellular Transport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -379965,7 +379893,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01368">
+            <rdf:Description rdf:about="#R_MAR01368">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GCHOLAtx"/>
@@ -379977,13 +379905,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01988x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01988x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01988c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01988c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01369" sboTerm="SBO:0000185" id="MAR01369" name="Transport of Guanosine-5&apos;-Diphosphate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01369" sboTerm="SBO:0000185" id="R_MAR01369" name="Transport of Guanosine-5&apos;-Diphosphate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -379991,7 +379919,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01369">
+            <rdf:Description rdf:about="#R_MAR01369">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.1.2.10"/>
@@ -380004,13 +379932,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01948c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01948c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01948g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01948g" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01371" sboTerm="SBO:0000176" id="MAR01371" name="Glycine Hydroxymethyltransferase, Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01371" sboTerm="SBO:0000176" id="R_MAR01371" name="Glycine Hydroxymethyltransferase, Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -380019,7 +379947,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01371">
+            <rdf:Description rdf:about="#R_MAR01371">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.1.2.1"/>
@@ -380032,18 +379960,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00789m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00789m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01986m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01034m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01034m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Shmt"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01372" sboTerm="SBO:0000176" id="MAR01372" name="D-Glucuronolactone:NAD+ Oxidoreductase, Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01372" sboTerm="SBO:0000176" id="R_MAR01372" name="D-Glucuronolactone:NAD+ Oxidoreductase, Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -380052,7 +379980,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01372">
+            <rdf:Description rdf:about="#R_MAR01372">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.5.1.12"/>
@@ -380065,14 +379993,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040m" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01685m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01685m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039m" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01681m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01681m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -380081,7 +380009,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01377" sboTerm="SBO:0000185" id="MAR01377" name="Glucose Transport via Membrane Vesicle" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01377" sboTerm="SBO:0000185" id="R_MAR01377" name="Glucose Transport via Membrane Vesicle" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -380090,7 +380018,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01377">
+            <rdf:Description rdf:about="#R_MAR01377">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.2.1.31"/>
@@ -380103,13 +380031,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01965r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01965r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01965e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01965e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01380" sboTerm="SBO:0000176" id="MAR01380" name="Glycogen Debranching Enzyme" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01380" sboTerm="SBO:0000176" id="R_MAR01380" name="Glycogen Debranching Enzyme" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -380118,7 +380046,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01380">
+            <rdf:Description rdf:about="#R_MAR01380">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.2.1.33"/>
@@ -380131,18 +380059,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01991c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01991c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01965c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01993c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01965c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01993c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG9485"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01381" sboTerm="SBO:0000185" id="MAR01381" name="L-Glutamine Transport via Electroneutral Transporter" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01381" sboTerm="SBO:0000185" id="R_MAR01381" name="L-Glutamine Transport via Electroneutral Transporter" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -380150,7 +380078,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01381">
+            <rdf:Description rdf:about="#R_MAR01381">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GLNtm"/>
@@ -380162,13 +380090,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01975c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01975c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01975m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01975m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01385" sboTerm="SBO:0000185" id="MAR01385" name="Secretion of L-Glycerate" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01385" sboTerm="SBO:0000185" id="R_MAR01385" name="Secretion of L-Glycerate" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -380177,7 +380105,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01385">
+            <rdf:Description rdf:about="#R_MAR01385">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.2.3.5"/>
@@ -380190,13 +380118,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03620c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03620c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03620e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03620e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01386" sboTerm="SBO:0000185" id="MAR01386" name="Transport of Glycine   via Proton Symport, Reversible, Lysosomal" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01386" sboTerm="SBO:0000185" id="R_MAR01386" name="Transport of Glycine   via Proton Symport, Reversible, Lysosomal" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -380205,7 +380133,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01386">
+            <rdf:Description rdf:about="#R_MAR01386">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.1.31"/>
@@ -380220,18 +380148,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01986l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01986c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG13384"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01396" sboTerm="SBO:0000185" id="MAR01396" name="Secretion of Glycine  via Secretory Vesicle (ATP Driven)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01396" sboTerm="SBO:0000185" id="R_MAR01396" name="Secretion of Glycine  via Secretory Vesicle (ATP Driven)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -380240,7 +380168,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01396">
+            <rdf:Description rdf:about="#R_MAR01396">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GLYVESSEC"/>
@@ -380252,21 +380180,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01986c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01986e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="VGAT"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01397" sboTerm="SBO:0000176" id="MAR01397" name="Geranyltranstransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01397" sboTerm="SBO:0000176" id="R_MAR01397" name="Geranyltranstransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -380275,7 +380203,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01397">
+            <rdf:Description rdf:about="#R_MAR01397">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.5.1.10"/>
@@ -380288,18 +380216,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02187x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01953x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02187x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01953x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02759x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01806x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01806x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Fpps"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01399" sboTerm="SBO:0000176" id="MAR01399" name="H8 Mannosyltransferase, Endoplasmic Reticulum" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01399" sboTerm="SBO:0000176" id="R_MAR01399" name="H8 Mannosyltransferase, Endoplasmic Reticulum" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -380308,7 +380236,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01399">
+            <rdf:Description rdf:about="#R_MAR01399">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/H8MTer_L"/>
@@ -380320,16 +380248,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01734r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02020r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01734r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02020r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01733r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03748r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01733r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03748r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01400" sboTerm="SBO:0000176" id="MAR01400" name="H8 Mannosyltransferase, Endoplasmic Reticulum" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01400" sboTerm="SBO:0000176" id="R_MAR01400" name="H8 Mannosyltransferase, Endoplasmic Reticulum" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -380338,7 +380266,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01400">
+            <rdf:Description rdf:about="#R_MAR01400">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/H8MTer_U"/>
@@ -380350,16 +380278,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01734r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02020r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01734r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02020r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01733r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03749r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01733r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03749r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01435" sboTerm="SBO:0000185" id="MAR01435" name="Palmitate Er Export" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01435" sboTerm="SBO:0000185" id="R_MAR01435" name="Palmitate Er Export" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -380367,7 +380295,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01435">
+            <rdf:Description rdf:about="#R_MAR01435">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/HDCAter"/>
@@ -380379,13 +380307,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02674r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02674r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02674c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02674c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01438" sboTerm="SBO:0000185" id="MAR01438" name="Transport of Trans-Hexadec-2-Enoyl Coenzyme A" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01438" sboTerm="SBO:0000185" id="R_MAR01438" name="Transport of Trans-Hexadec-2-Enoyl Coenzyme A" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -380393,7 +380321,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01438">
+            <rdf:Description rdf:about="#R_MAR01438">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/HDD2COAtx"/>
@@ -380405,13 +380333,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00051c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00051c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00051x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00051x" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01439" sboTerm="SBO:0000176" id="MAR01439" name="Carnitine Transferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01439" sboTerm="SBO:0000176" id="R_MAR01439" name="Carnitine Transferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -380419,7 +380347,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01439">
+            <rdf:Description rdf:about="#R_MAR01439">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/HEXCCPT2"/>
@@ -380431,18 +380359,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02109m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02109m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02348m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02110m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02110m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CPT2"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01441" sboTerm="SBO:0000185" id="MAR01441" name="Transport into the Mitochondria (Carnitine)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01441" sboTerm="SBO:0000185" id="R_MAR01441" name="Transport into the Mitochondria (Carnitine)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -380450,7 +380378,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01441">
+            <rdf:Description rdf:about="#R_MAR01441">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/HEXCCRNt"/>
@@ -380462,16 +380390,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02109c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02109c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02109m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02109m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="colt"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01442" sboTerm="SBO:0000185" id="MAR01442" name="Histamine Secretion via Secretory Vesicle (ATP Driven)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01442" sboTerm="SBO:0000185" id="R_MAR01442" name="Histamine Secretion via Secretory Vesicle (ATP Driven)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -380480,7 +380408,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01442">
+            <rdf:Description rdf:about="#R_MAR01442">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.1.1"/>
@@ -380493,21 +380421,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02124c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02124c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02124e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02124e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Vmat"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01444" sboTerm="SBO:0000185" id="MAR01444" name="H+/K+ Gastric/Non-Gastric P-ATPase And ABC ATPase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01444" sboTerm="SBO:0000185" id="R_MAR01444" name="H+/K+ Gastric/Non-Gastric P-ATPase And ABC ATPase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -380516,7 +380444,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01444">
+            <rdf:Description rdf:about="#R_MAR01444">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.6.3.10"/>
@@ -380529,18 +380457,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02200e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02200e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02200c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02200c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01446" sboTerm="SBO:0000176" id="MAR01446" name="Hydroxymethylglutaryl Coenzyme A Reductase (Ir)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01446" sboTerm="SBO:0000176" id="R_MAR01446" name="Hydroxymethylglutaryl Coenzyme A Reductase (Ir)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -380549,7 +380477,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01446">
+            <rdf:Description rdf:about="#R_MAR01446">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.88"/>
@@ -380562,20 +380490,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039r" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02555r" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02131r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02555r" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02131r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554r" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM00167r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554r" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM00167r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Hmgcr"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01447" sboTerm="SBO:0000185" id="MAR01447" name="Hydroxymethylglutaryl Coenzyme A Reversible Peroxisomal Transport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01447" sboTerm="SBO:0000185" id="R_MAR01447" name="Hydroxymethylglutaryl Coenzyme A Reversible Peroxisomal Transport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -380584,7 +380512,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01447">
+            <rdf:Description rdf:about="#R_MAR01447">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/HMGCOAtx"/>
@@ -380596,13 +380524,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02131c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02131c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02131x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02131x" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01449" sboTerm="SBO:0000176" id="MAR01449" name="Hydroxymethylglutaryl Coenzyme A Lyase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01449" sboTerm="SBO:0000176" id="R_MAR01449" name="Hydroxymethylglutaryl Coenzyme A Lyase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -380611,7 +380539,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01449">
+            <rdf:Description rdf:about="#R_MAR01449">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.1.3.4"/>
@@ -380624,17 +380552,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02131x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02131x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01253x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01253x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Hmgcl"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01450" sboTerm="SBO:0000176" id="MAR01450" name="Heme Oxygenase 1" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01450" sboTerm="SBO:0000176" id="R_MAR01450" name="Heme Oxygenase 1" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -380643,7 +380571,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01450">
+            <rdf:Description rdf:about="#R_MAR01450">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.99.3"/>
@@ -380656,23 +380584,23 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="5" constant="true"/>
-          <speciesReference species="MAM02049c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="5" constant="true"/>
+          <speciesReference species="M_MAM02049c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="3" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01399c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01595c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01821c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM01399c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01595c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01821c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="3" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Ho"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01452" sboTerm="SBO:0000185" id="MAR01452" name="Heptadecanoate Transport into the Mitochondria" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01452" sboTerm="SBO:0000185" id="R_MAR01452" name="Heptadecanoate Transport into the Mitochondria" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -380681,7 +380609,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01452">
+            <rdf:Description rdf:about="#R_MAR01452">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.88"/>
@@ -380694,16 +380622,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02100c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02100c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02100m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02100m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="colt"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01453" sboTerm="SBO:0000176" id="MAR01453" name="Hydroxypyruvate Reductase (NADH)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01453" sboTerm="SBO:0000176" id="R_MAR01453" name="Hydroxypyruvate Reductase (NADH)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -380712,7 +380640,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01453">
+            <rdf:Description rdf:about="#R_MAR01453">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.27"/>
@@ -380725,19 +380653,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM02154c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02553c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM02154c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02553c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02552c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03620c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02552c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03620c" stoichiometry="2" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Ldh"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01455" sboTerm="SBO:0000185" id="MAR01455" name="4-Hydroxyretinoic Acid Transport, Nuclear" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01455" sboTerm="SBO:0000185" id="R_MAR01455" name="4-Hydroxyretinoic Acid Transport, Nuclear" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -380746,7 +380674,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01455">
+            <rdf:Description rdf:about="#R_MAR01455">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/HRETNtn"/>
@@ -380758,13 +380686,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01006c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01006c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01006n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01006n" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01456" sboTerm="SBO:0000176" id="MAR01456" name="Hydroxysteroid (17-Beta) Dehydrogenase 4" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01456" sboTerm="SBO:0000176" id="R_MAR01456" name="Hydroxysteroid (17-Beta) Dehydrogenase 4" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -380772,7 +380700,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01456">
+            <rdf:Description rdf:about="#R_MAR01456">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/HSD17B42x"/>
@@ -380784,21 +380712,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00037x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039x" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02555x" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02630x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00037x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039x" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02555x" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02630x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00755x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040x" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM02554x" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM00755x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040x" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM02554x" stoichiometry="2" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Mfe2"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01458" sboTerm="SBO:0000176" id="MAR01458" name="Hydroxysteroid (17-Beta) Dehydrogenase 4" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01458" sboTerm="SBO:0000176" id="R_MAR01458" name="Hydroxysteroid (17-Beta) Dehydrogenase 4" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -380806,7 +380734,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01458">
+            <rdf:Description rdf:about="#R_MAR01458">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.10.1.1"/>
@@ -380819,21 +380747,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00749x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00749x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00748x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00748x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Mfe2"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01461" sboTerm="SBO:0000185" id="MAR01461" name="H Transporter, Endoplasmic Reticulum" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01461" sboTerm="SBO:0000185" id="R_MAR01461" name="H Transporter, Endoplasmic Reticulum" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -380841,7 +380769,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01461">
+            <rdf:Description rdf:about="#R_MAR01461">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/Htr"/>
@@ -380855,13 +380783,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01462" sboTerm="SBO:0000185" id="MAR01462" name="H Transporter, Peroxisome" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01462" sboTerm="SBO:0000185" id="R_MAR01462" name="H Transporter, Peroxisome" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -380869,7 +380797,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01462">
+            <rdf:Description rdf:about="#R_MAR01462">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/Htx"/>
@@ -380883,13 +380811,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039x" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01463" sboTerm="SBO:0000185" id="MAR01463" name="Hypoxanthine Faciliated Transport from Lysosome" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01463" sboTerm="SBO:0000185" id="R_MAR01463" name="Hypoxanthine Faciliated Transport from Lysosome" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -380898,7 +380826,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01463">
+            <rdf:Description rdf:about="#R_MAR01463">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/HXANtl"/>
@@ -380910,16 +380838,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02159l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02159l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02159c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02159c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Ent1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01464" sboTerm="SBO:0000185" id="MAR01464" name="Transport of Isoleucine, Mitochondrial" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01464" sboTerm="SBO:0000185" id="R_MAR01464" name="Transport of Isoleucine, Mitochondrial" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -380928,7 +380856,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01464">
+            <rdf:Description rdf:about="#R_MAR01464">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.42"/>
@@ -380941,13 +380869,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02184c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02184c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02184m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02184m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01466" sboTerm="SBO:0000185" id="MAR01466" name="Transport of Inosine, Faciliated, Lysosomal" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01466" sboTerm="SBO:0000185" id="R_MAR01466" name="Transport of Inosine, Faciliated, Lysosomal" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -380956,7 +380884,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01466">
+            <rdf:Description rdf:about="#R_MAR01466">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/INStl"/>
@@ -380968,16 +380896,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02170l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02170l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02170c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02170c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Ent1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01468" sboTerm="SBO:0000176" id="MAR01468" name="Isopentenyl-Diphosphate D-Isomerase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01468" sboTerm="SBO:0000176" id="R_MAR01468" name="Isopentenyl-Diphosphate D-Isomerase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -380986,7 +380914,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01468">
+            <rdf:Description rdf:about="#R_MAR01468">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/5.3.3.2"/>
@@ -380999,16 +380927,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02187x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02187x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01706x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01706x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Idi"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01469" sboTerm="SBO:0000185" id="MAR01469" name="Isopentenyl Diphosphate Transport, Endoplasmatic Reticulum" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01469" sboTerm="SBO:0000185" id="R_MAR01469" name="Isopentenyl Diphosphate Transport, Endoplasmatic Reticulum" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -381017,7 +380945,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01469">
+            <rdf:Description rdf:about="#R_MAR01469">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/5.3.3.2"/>
@@ -381030,13 +380958,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02187r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02187r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02187c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02187c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01471" sboTerm="SBO:0000176" id="MAR01471" name="B-Ketoacyl Synthetase (Palmitate, N-C16:0)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01471" sboTerm="SBO:0000176" id="R_MAR01471" name="B-Ketoacyl Synthetase (Palmitate, N-C16:0)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -381045,7 +380973,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01471">
+            <rdf:Description rdf:about="#R_MAR01471">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.85"/>
@@ -381058,20 +380986,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01261c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="20" constant="true"/>
-          <speciesReference species="MAM02444c" stoichiometry="7" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="14" constant="true"/>
+          <speciesReference species="M_MAM01261c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="20" constant="true"/>
+          <speciesReference species="M_MAM02444c" stoichiometry="7" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="14" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01596c" stoichiometry="7" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="8" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="6" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="14" constant="true"/>
-          <speciesReference species="MAM02674c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01596c" stoichiometry="7" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="8" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="6" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="14" constant="true"/>
+          <speciesReference species="M_MAM02674c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01472" sboTerm="SBO:0000176" id="MAR01472" name="Ketohexokinase (D-Tagatose)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01472" sboTerm="SBO:0000176" id="R_MAR01472" name="Ketohexokinase (D-Tagatose)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -381080,7 +381008,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01472">
+            <rdf:Description rdf:about="#R_MAR01472">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.1.3"/>
@@ -381093,19 +381021,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01745c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01745c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03960c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03960c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG7328"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01474" sboTerm="SBO:0000176" id="MAR01474" name="Lactaldehyde Dehydrogenase, Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01474" sboTerm="SBO:0000176" id="R_MAR01474" name="Lactaldehyde Dehydrogenase, Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -381114,7 +381042,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01474">
+            <rdf:Description rdf:about="#R_MAR01474">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.2.1.3"/>
@@ -381127,14 +381055,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01715m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01715m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01716m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01716m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -381146,7 +381074,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01475" sboTerm="SBO:0000176" id="MAR01475" name="Lecithin-Cholesterol Acyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01475" sboTerm="SBO:0000176" id="R_MAR01475" name="Lecithin-Cholesterol Acyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -381155,7 +381083,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01475">
+            <rdf:Description rdf:about="#R_MAR01475">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.43"/>
@@ -381168,18 +381096,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01450e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02684e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02684e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01451e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00656e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01451e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00656e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG18858"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01476" sboTerm="SBO:0000185" id="MAR01476" name="Lactose Transport from Golgi to Extracellular (Via Vesicle)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01476" sboTerm="SBO:0000185" id="R_MAR01476" name="Lactose Transport from Golgi to Extracellular (Via Vesicle)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -381187,7 +381115,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01476">
+            <rdf:Description rdf:about="#R_MAR01476">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.13.9"/>
@@ -381200,13 +381128,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02332g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02332g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02332e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02332e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01480" sboTerm="SBO:0000185" id="MAR01480" name="Transport of L-Leucine, Mitochondrial" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01480" sboTerm="SBO:0000185" id="R_MAR01480" name="Transport of L-Leucine, Mitochondrial" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -381215,7 +381143,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01480">
+            <rdf:Description rdf:about="#R_MAR01480">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.28"/>
@@ -381228,13 +381156,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02360c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02360c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02360m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02360m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01481" sboTerm="SBO:0000176" id="MAR01481" name="Transport into the Mitochondria (Carnitine)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01481" sboTerm="SBO:0000176" id="R_MAR01481" name="Transport into the Mitochondria (Carnitine)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -381242,7 +381170,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01481">
+            <rdf:Description rdf:about="#R_MAR01481">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/LGNCCPT2"/>
@@ -381254,18 +381182,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02970m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02970m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02348m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02971m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02971m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CPT2"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01482" sboTerm="SBO:0000185" id="MAR01482" name="Transport into the Mitochondria (Carnitine)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01482" sboTerm="SBO:0000185" id="R_MAR01482" name="Transport into the Mitochondria (Carnitine)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -381273,7 +381201,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01482">
+            <rdf:Description rdf:about="#R_MAR01482">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/LGNCCRNt"/>
@@ -381285,16 +381213,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02970c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02970c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02970m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02970m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="colt"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01483" sboTerm="SBO:0000185" id="MAR01483" name="Transport of Lipoate  via Sodium Symport" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01483" sboTerm="SBO:0000185" id="R_MAR01483" name="Transport of Lipoate  via Sodium Symport" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -381303,7 +381231,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01483">
+            <rdf:Description rdf:about="#R_MAR01483">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/LIPOti"/>
@@ -381315,17 +381243,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02394e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02394e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02394c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02394c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -381334,7 +381262,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01485" sboTerm="SBO:0000185" id="MAR01485" name="Transport of L-Lactate via Diffusion, Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01485" sboTerm="SBO:0000185" id="R_MAR01485" name="Transport of L-Lactate via Diffusion, Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -381343,7 +381271,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01485">
+            <rdf:Description rdf:about="#R_MAR01485">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.21"/>
@@ -381356,10 +381284,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02403c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02403c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02403m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02403m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -381368,7 +381296,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01486" sboTerm="SBO:0000185" id="MAR01486" name="Transport into the Mitochondria (Carnitine)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01486" sboTerm="SBO:0000185" id="R_MAR01486" name="Transport into the Mitochondria (Carnitine)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -381376,7 +381304,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01486">
+            <rdf:Description rdf:about="#R_MAR01486">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.4.1.5"/>
@@ -381389,16 +381317,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00105c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00105c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00105m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00105m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="colt"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01487" sboTerm="SBO:0000185" id="MAR01487" name="Transport into the Mitochondria (Carnitine)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01487" sboTerm="SBO:0000185" id="R_MAR01487" name="Transport into the Mitochondria (Carnitine)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -381406,7 +381334,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01487">
+            <rdf:Description rdf:about="#R_MAR01487">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/LNLCCRNt"/>
@@ -381418,16 +381346,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02388c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02388c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02388m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02388m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="colt"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01488" sboTerm="SBO:0000176" id="MAR01488" name="Carnitine O-Palmitoyltransferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01488" sboTerm="SBO:0000176" id="R_MAR01488" name="Carnitine O-Palmitoyltransferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -381435,7 +381363,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01488">
+            <rdf:Description rdf:about="#R_MAR01488">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.21"/>
@@ -381448,18 +381376,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02390c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02390c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03727c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03727c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="whd"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01489" sboTerm="SBO:0000176" id="MAR01489" name="Carnitine Transferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01489" sboTerm="SBO:0000176" id="R_MAR01489" name="Carnitine Transferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -381467,7 +381395,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01489">
+            <rdf:Description rdf:about="#R_MAR01489">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/LNLNCACPT2"/>
@@ -381479,18 +381407,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03727m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03727m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02348m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02390m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02390m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CPT2"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01491" sboTerm="SBO:0000185" id="MAR01491" name="Transport into the Mitochondria (Carnitine)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01491" sboTerm="SBO:0000185" id="R_MAR01491" name="Transport into the Mitochondria (Carnitine)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -381498,7 +381426,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01491">
+            <rdf:Description rdf:about="#R_MAR01491">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/LNLNCACRNt"/>
@@ -381510,16 +381438,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03727c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03727c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03727m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03727m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="colt"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01492" sboTerm="SBO:0000185" id="MAR01492" name="Transport into the Mitochondria (Carnitine)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01492" sboTerm="SBO:0000185" id="R_MAR01492" name="Transport into the Mitochondria (Carnitine)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -381527,7 +381455,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01492">
+            <rdf:Description rdf:about="#R_MAR01492">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/LNLNCGCRNt"/>
@@ -381539,16 +381467,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01933c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01933c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01933m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01933m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="colt"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01499" sboTerm="SBO:0000185" id="MAR01499" name="Lysophosphatidylcholine Transport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01499" sboTerm="SBO:0000185" id="R_MAR01499" name="Lysophosphatidylcholine Transport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -381557,7 +381485,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01499">
+            <rdf:Description rdf:about="#R_MAR01499">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/LPCHOLt"/>
@@ -381569,13 +381497,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00656e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00656e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00656c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00656c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01506" sboTerm="SBO:0000176" id="MAR01506" name="Lecithin Retinol Acyltransferase (11-Cis)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01506" sboTerm="SBO:0000176" id="R_MAR01506" name="Lecithin Retinol Acyltransferase (11-Cis)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -381584,7 +381512,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01506">
+            <rdf:Description rdf:about="#R_MAR01506">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.14.1"/>
@@ -381597,15 +381525,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00291c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02684c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00291c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02684c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00656c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02838c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00656c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02838c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01507" sboTerm="SBO:0000176" id="MAR01507" name="Lecithin Retinol Acyltransferase (9-Cis)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01507" sboTerm="SBO:0000176" id="R_MAR01507" name="Lecithin Retinol Acyltransferase (9-Cis)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -381614,7 +381542,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01507">
+            <rdf:Description rdf:about="#R_MAR01507">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/5.4.99.7"/>
@@ -381627,15 +381555,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01232c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02684c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01232c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02684c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00656c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03315c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00656c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03315c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01511" sboTerm="SBO:0000176" id="MAR01511" name="M4A Transamidase, Endoplasmic Reticulum" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01511" sboTerm="SBO:0000176" id="R_MAR01511" name="M4A Transamidase, Endoplasmic Reticulum" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -381644,7 +381572,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01511">
+            <rdf:Description rdf:about="#R_MAR01511">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.4.3.14"/>
@@ -381657,15 +381585,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02001r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03749r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02001r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03749r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02022r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03750r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02022r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03750r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01513" sboTerm="SBO:0000176" id="MAR01513" name="M4B Phosphoethanolaminyl Transferase, Endoplasmic Reticulum" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01513" sboTerm="SBO:0000176" id="R_MAR01513" name="M4B Phosphoethanolaminyl Transferase, Endoplasmic Reticulum" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -381674,7 +381602,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01513">
+            <rdf:Description rdf:about="#R_MAR01513">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/M4BET2er"/>
@@ -381686,15 +381614,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02461r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02685r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02461r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02685r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00236r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03749r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00236r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03749r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01514" sboTerm="SBO:0000185" id="MAR01514" name="Monoacylglycerol 2 Transport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01514" sboTerm="SBO:0000185" id="R_MAR01514" name="Monoacylglycerol 2 Transport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -381703,7 +381631,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01514">
+            <rdf:Description rdf:about="#R_MAR01514">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.2.1.5"/>
@@ -381716,13 +381644,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM10006e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM10006e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM10006c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM10006c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01517" sboTerm="SBO:0000176" id="MAR01517" name="Malonyl Coenzyme A-Acp Transacylase, Mitochondrial" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01517" sboTerm="SBO:0000176" id="R_MAR01517" name="Malonyl Coenzyme A-Acp Transacylase, Mitochondrial" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -381731,7 +381659,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01517">
+            <rdf:Description rdf:about="#R_MAR01517">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.39"/>
@@ -381744,18 +381672,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02444m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00184m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02444m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00184m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02442m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02442m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="beg"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01518" sboTerm="SBO:0000185" id="MAR01518" name="Metanephrine Secretion via Secretory Vesicle (ATP Driven)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01518" sboTerm="SBO:0000185" id="R_MAR01518" name="Metanephrine Secretion via Secretory Vesicle (ATP Driven)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -381763,7 +381691,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01518">
+            <rdf:Description rdf:about="#R_MAR01518">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.37"/>
@@ -381776,18 +381704,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02407c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02407c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02407e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02407e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01520" sboTerm="SBO:0000176" id="MAR01520" name="Mevalonate Kinase (ATP)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01520" sboTerm="SBO:0000176" id="R_MAR01520" name="Mevalonate Kinase (ATP)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -381796,7 +381724,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01520">
+            <rdf:Description rdf:about="#R_MAR01520">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.1.36"/>
@@ -381811,19 +381739,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00167x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00167x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00165x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00165x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Mvk"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01523" sboTerm="SBO:0000176" id="MAR01523" name="N4-Acetylaminobutanal:NAD+ Oxidoreductase, Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01523" sboTerm="SBO:0000176" id="R_MAR01523" name="N4-Acetylaminobutanal:NAD+ Oxidoreductase, Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -381831,7 +381759,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01523">
+            <rdf:Description rdf:about="#R_MAR01523">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.5.1.12"/>
@@ -381844,14 +381772,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02514m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02514m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039m" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00952m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00952m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -381860,7 +381788,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01524" sboTerm="SBO:0000176" id="MAR01524" name="N-Acetylgalactosaminidase, Alpha-" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01524" sboTerm="SBO:0000176" id="R_MAR01524" name="N-Acetylgalactosaminidase, Alpha-" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -381869,7 +381797,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01524">
+            <rdf:Description rdf:about="#R_MAR01524">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.2.1.49"/>
@@ -381882,19 +381810,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03000l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03000l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03110l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03395l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03110l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03395l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG7997"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01525" sboTerm="SBO:0000185" id="MAR01525" name="Bicarbonate Transport (HCl/ (Hcl/NaHCO3 Exchange)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01525" sboTerm="SBO:0000185" id="R_MAR01525" name="Bicarbonate Transport (HCl/ (Hcl/NaHCO3 Exchange)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -381903,7 +381831,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01525">
+            <rdf:Description rdf:about="#R_MAR01525">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/NAHCO3_HCLt"/>
@@ -381915,22 +381843,22 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01442c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01442c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01442e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01442e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Ndae1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01527" sboTerm="SBO:0000185" id="MAR01527" name="Sodium Transport (Uniport)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01527" sboTerm="SBO:0000185" id="R_MAR01527" name="Sodium Transport (Uniport)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -381939,7 +381867,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01527">
+            <rdf:Description rdf:about="#R_MAR01527">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/NAt"/>
@@ -381951,16 +381879,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG10444"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01528" sboTerm="SBO:0000185" id="MAR01528" name="Sodium/Ammonium Proton Antiporter" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01528" sboTerm="SBO:0000185" id="R_MAR01528" name="Sodium/Ammonium Proton Antiporter" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -381969,7 +381897,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01528">
+            <rdf:Description rdf:about="#R_MAR01528">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/NAt5"/>
@@ -381981,18 +381909,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02579e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02579e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02579c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02579c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Nhe2"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01529" sboTerm="SBO:0000185" id="MAR01529" name="Na+/Ca2+-NH4+ Antiport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01529" sboTerm="SBO:0000185" id="R_MAR01529" name="Na+/Ca2+-NH4+ Antiport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -382001,7 +381929,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01529">
+            <rdf:Description rdf:about="#R_MAR01529">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/NCNt"/>
@@ -382013,20 +381941,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01413e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="4" constant="true"/>
-          <speciesReference species="MAM02579e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01413e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM02579e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01413c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="4" constant="true"/>
-          <speciesReference species="MAM02579c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01413c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM02579c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Nckx30C"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01534" sboTerm="SBO:0000185" id="MAR01534" name="Transport of Ammonium ion via Proton Antiport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01534" sboTerm="SBO:0000185" id="R_MAR01534" name="Transport of Ammonium ion via Proton Antiport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -382035,7 +381963,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01534">
+            <rdf:Description rdf:about="#R_MAR01534">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.4.6"/>
@@ -382048,18 +381976,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02579c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02579c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02579e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02579e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Rh50"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01537" sboTerm="SBO:0000185" id="MAR01537" name="Transport of Ammonium ion, Nuclear" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01537" sboTerm="SBO:0000185" id="R_MAR01537" name="Transport of Ammonium ion, Nuclear" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -382067,7 +381995,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01537">
+            <rdf:Description rdf:about="#R_MAR01537">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/NH4tn"/>
@@ -382081,13 +382009,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02579c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02579c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02579n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02579n" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01541" sboTerm="SBO:0000185" id="MAR01541" name="Transport of Ammonium ion, Peroxisomal" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01541" sboTerm="SBO:0000185" id="R_MAR01541" name="Transport of Ammonium ion, Peroxisomal" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -382095,7 +382023,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01541">
+            <rdf:Description rdf:about="#R_MAR01541">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.4.6"/>
@@ -382110,13 +382038,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02579c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02579c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02579x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02579x" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01542" sboTerm="SBO:0000176" id="MAR01542" name="Nicotinamide-Nucleotide Adenylyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01542" sboTerm="SBO:0000176" id="R_MAR01542" name="Nicotinamide-Nucleotide Adenylyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -382124,7 +382052,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01542">
+            <rdf:Description rdf:about="#R_MAR01542">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.4.6"/>
@@ -382137,19 +382065,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02581c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02581c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02552c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Nmnat"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01554" sboTerm="SBO:0000176" id="MAR01554" name="Nicotinate-Nucleotide Adenylyltransferase, Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01554" sboTerm="SBO:0000176" id="R_MAR01554" name="Nicotinate-Nucleotide Adenylyltransferase, Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -382158,7 +382086,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01554">
+            <rdf:Description rdf:about="#R_MAR01554">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.7.18"/>
@@ -382171,19 +382099,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02585m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02585m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02759m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01646m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01646m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Nmnat"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01555" sboTerm="SBO:0000185" id="MAR01555" name="Secretion of Noradrenaline  via Secretory Vesicle (ATP Driven)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01555" sboTerm="SBO:0000185" id="R_MAR01555" name="Secretion of Noradrenaline  via Secretory Vesicle (ATP Driven)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -382192,7 +382120,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01555">
+            <rdf:Description rdf:about="#R_MAR01555">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.7.18"/>
@@ -382205,21 +382133,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02617c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02617c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02617e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02617e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Vmat"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01556" sboTerm="SBO:0000176" id="MAR01556" name="Carnitine Transferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01556" sboTerm="SBO:0000176" id="R_MAR01556" name="Carnitine Transferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -382227,7 +382155,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01556">
+            <rdf:Description rdf:about="#R_MAR01556">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.1.1.28"/>
@@ -382240,18 +382168,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00024m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00024m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02348m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00025m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00025m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CPT2"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01559" sboTerm="SBO:0000185" id="MAR01559" name="Transport into the Mitochondria (Carnitine)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01559" sboTerm="SBO:0000185" id="R_MAR01559" name="Transport into the Mitochondria (Carnitine)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -382259,7 +382187,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01559">
+            <rdf:Description rdf:about="#R_MAR01559">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.13.39"/>
@@ -382272,16 +382200,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00024c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00024c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00024m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00024m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="colt"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01561" sboTerm="SBO:0000185" id="MAR01561" name="Fatty Acid Intracellular Transport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01561" sboTerm="SBO:0000185" id="R_MAR01561" name="Fatty Acid Intracellular Transport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -382289,7 +382217,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01561">
+            <rdf:Description rdf:about="#R_MAR01561">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/OCCOAtx"/>
@@ -382301,13 +382229,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02644c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02644c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02644x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02644x" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01562" sboTerm="SBO:0000185" id="MAR01562" name="Fatty Acid Intracellular Transport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01562" sboTerm="SBO:0000185" id="R_MAR01562" name="Fatty Acid Intracellular Transport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -382315,7 +382243,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01562">
+            <rdf:Description rdf:about="#R_MAR01562">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ODECOAtx"/>
@@ -382327,13 +382255,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02647c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02647c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02647x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02647x" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01563" sboTerm="SBO:0000185" id="MAR01563" name="4-Oxo-Retinoic Acid Transport, Nuclear" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01563" sboTerm="SBO:0000185" id="R_MAR01563" name="4-Oxo-Retinoic Acid Transport, Nuclear" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -382342,7 +382270,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01563">
+            <rdf:Description rdf:about="#R_MAR01563">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ORETNtn"/>
@@ -382354,13 +382282,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01026c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01026c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01026n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01026n" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01564" sboTerm="SBO:0000185" id="MAR01564" name="13-Cis-4-Oxo-Retinoic Acid Transport, Nuclear" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01564" sboTerm="SBO:0000185" id="R_MAR01564" name="13-Cis-4-Oxo-Retinoic Acid Transport, Nuclear" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -382369,7 +382297,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01564">
+            <rdf:Description rdf:about="#R_MAR01564">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ORETNtn2"/>
@@ -382381,13 +382309,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00348c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00348n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00348n" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01566" sboTerm="SBO:0000185" id="MAR01566" name="Oxalate Transport Out of Peroxisome" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01566" sboTerm="SBO:0000185" id="R_MAR01566" name="Oxalate Transport Out of Peroxisome" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -382396,7 +382324,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01566">
+            <rdf:Description rdf:about="#R_MAR01566">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.1.1.23"/>
@@ -382409,13 +382337,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02661x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02661x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02661c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02661c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01567" sboTerm="SBO:0000176" id="MAR01567" name="5-Beta-Cytochrome P450, Family 27, Subfamily A, Polypeptide 1" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01567" sboTerm="SBO:0000176" id="R_MAR01567" name="5-Beta-Cytochrome P450, Family 27, Subfamily A, Polypeptide 1" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -382423,7 +382351,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01567">
+            <rdf:Description rdf:about="#R_MAR01567">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.13.15"/>
@@ -382436,15 +382364,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01093m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01093m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00756m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02554m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00756m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02554m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -382453,7 +382381,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01575" sboTerm="SBO:0000176" id="MAR01575" name="Cytochrome P450 Leukotriene B4" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01575" sboTerm="SBO:0000176" id="R_MAR01575" name="Cytochrome P450 Leukotriene B4" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -382462,7 +382390,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01575">
+            <rdf:Description rdf:about="#R_MAR01575">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/P450LTB4r"/>
@@ -382474,17 +382402,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00599r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630r" stoichiometry="1.5" constant="true"/>
+          <speciesReference species="M_MAM00599r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630r" stoichiometry="1.5" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00585r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040r" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02554r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00585r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02554r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01578" sboTerm="SBO:0000176" id="MAR01578" name="Cholesterol Monooxygenase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01578" sboTerm="SBO:0000176" id="R_MAR01578" name="Cholesterol Monooxygenase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -382493,7 +382421,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01578">
+            <rdf:Description rdf:about="#R_MAR01578">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/P450SCC1m"/>
@@ -382505,18 +382433,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01450m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00592m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00592m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01579" sboTerm="SBO:0000185" id="MAR01579" name="Phosphatidate Scramblase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01579" sboTerm="SBO:0000185" id="R_MAR01579" name="Phosphatidate Scramblase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -382525,7 +382453,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01579">
+            <rdf:Description rdf:about="#R_MAR01579">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PA_HSter"/>
@@ -382537,13 +382465,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02733c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02733c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02733r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02733r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01580" sboTerm="SBO:0000185" id="MAR01580" name="Phosphatidate Scramblase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01580" sboTerm="SBO:0000185" id="R_MAR01580" name="Phosphatidate Scramblase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -382552,7 +382480,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01580">
+            <rdf:Description rdf:about="#R_MAR01580">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PA_HStg"/>
@@ -382564,13 +382492,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02733c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02733c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02733g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02733g" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01582" sboTerm="SBO:0000185" id="MAR01582" name="Phosphatidate Transport, Nuclear" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01582" sboTerm="SBO:0000185" id="R_MAR01582" name="Phosphatidate Transport, Nuclear" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -382578,7 +382506,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01582">
+            <rdf:Description rdf:about="#R_MAR01582">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PA_HStn"/>
@@ -382590,13 +382518,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02733c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02733c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02733n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02733n" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01583" sboTerm="SBO:0000185" id="MAR01583" name="Phosphatidylcholine Flippase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01583" sboTerm="SBO:0000185" id="R_MAR01583" name="Phosphatidylcholine Flippase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -382605,7 +382533,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01583">
+            <rdf:Description rdf:about="#R_MAR01583">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.6.3.1"/>
@@ -382618,21 +382546,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02684m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02684m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02684c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02684c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG33298"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01586" sboTerm="SBO:0000176" id="MAR01586" name="Choline Phosphatase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01586" sboTerm="SBO:0000176" id="R_MAR01586" name="Choline Phosphatase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -382641,7 +382569,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01586">
+            <rdf:Description rdf:about="#R_MAR01586">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.4.4"/>
@@ -382654,19 +382582,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02684m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02684m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01513m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02728m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01513m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02728m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Pld"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01587" sboTerm="SBO:0000185" id="MAR01587" name="Transport into the Cytosol from Peroxisome (Carnitine)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01587" sboTerm="SBO:0000185" id="R_MAR01587" name="Transport into the Cytosol from Peroxisome (Carnitine)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -382675,7 +382603,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01587">
+            <rdf:Description rdf:about="#R_MAR01587">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PCRNtc"/>
@@ -382687,13 +382615,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02657x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02657x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02657c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02657c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01588" sboTerm="SBO:0000185" id="MAR01588" name="Transport into the Mitochondria from Cytosol (Carnitine)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01588" sboTerm="SBO:0000185" id="R_MAR01588" name="Transport into the Mitochondria from Cytosol (Carnitine)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -382702,7 +382630,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01588">
+            <rdf:Description rdf:about="#R_MAR01588">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PCRNtm"/>
@@ -382714,16 +382642,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02657c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02657c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02657m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02657m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="colt"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01591" sboTerm="SBO:0000176" id="MAR01591" name="Pseudoecgonine Coenzyme A Transferase, Endoplasmatic Reticulum" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01591" sboTerm="SBO:0000176" id="R_MAR01591" name="Pseudoecgonine Coenzyme A Transferase, Endoplasmatic Reticulum" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -382732,7 +382660,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01591">
+            <rdf:Description rdf:about="#R_MAR01591">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PECGONCOATr"/>
@@ -382744,18 +382672,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03849r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03849r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01334r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03850r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03850r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01594" sboTerm="SBO:0000185" id="MAR01594" name="Phosphatidylethanolamine Flippase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01594" sboTerm="SBO:0000185" id="R_MAR01594" name="Phosphatidylethanolamine Flippase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -382764,7 +382692,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01594">
+            <rdf:Description rdf:about="#R_MAR01594">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.6.3.1"/>
@@ -382777,15 +382705,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02685e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02685e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02685c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02685c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -382795,7 +382723,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01596" sboTerm="SBO:0000185" id="MAR01596" name="Phosphatidylethanolamine Flippase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01596" sboTerm="SBO:0000185" id="R_MAR01596" name="Phosphatidylethanolamine Flippase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -382804,7 +382732,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01596">
+            <rdf:Description rdf:about="#R_MAR01596">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.6.3.1"/>
@@ -382817,15 +382745,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02685c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02685c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02685m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02685m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -382834,7 +382762,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01597" sboTerm="SBO:0000185" id="MAR01597" name="Peptide (Lysine) Nuclear Transport via Diffusion" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01597" sboTerm="SBO:0000185" id="R_MAR01597" name="Peptide (Lysine) Nuclear Transport via Diffusion" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -382842,7 +382770,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01597">
+            <rdf:Description rdf:about="#R_MAR01597">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.4.17"/>
@@ -382855,13 +382783,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00204e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00204e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00204n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00204n" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01600" sboTerm="SBO:0000176" id="MAR01600" name="Peroxisomal Lumped Long Chain Fatty Acid Oxidation" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01600" sboTerm="SBO:0000176" id="R_MAR01600" name="Peroxisomal Lumped Long Chain Fatty Acid Oxidation" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -382870,7 +382798,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01600">
+            <rdf:Description rdf:about="#R_MAR01600">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.4.17"/>
@@ -382883,19 +382811,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597x" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM02040x" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM02552x" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM02630x" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03887x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597x" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM02040x" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM02552x" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM02630x" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03887x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039x" stoichiometry="5" constant="true"/>
-          <speciesReference species="MAM02041x" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02553x" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM02774x" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03554x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039x" stoichiometry="5" constant="true"/>
+          <speciesReference species="M_MAM02041x" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02553x" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM02774x" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03554x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:and>
@@ -382904,7 +382832,7 @@
           </fbc:and>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01601" sboTerm="SBO:0000185" id="MAR01601" name="Phosphatidylethanolamine Transport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01601" sboTerm="SBO:0000185" id="R_MAR01601" name="Phosphatidylethanolamine Transport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -382913,7 +382841,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01601">
+            <rdf:Description rdf:about="#R_MAR01601">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.12"/>
@@ -382926,13 +382854,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02685e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02685e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02685c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02685c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01607" sboTerm="SBO:0000185" id="MAR01607" name="Phosphatidylglycerol Transport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01607" sboTerm="SBO:0000185" id="R_MAR01607" name="Phosphatidylglycerol Transport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -382941,7 +382869,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01607">
+            <rdf:Description rdf:about="#R_MAR01607">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.3.18"/>
@@ -382954,13 +382882,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02715e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02715e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02715c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02715c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01612" sboTerm="SBO:0000176" id="MAR01612" name="Phosphatidylglycerol Phosphate Phosphatase (Homo Sapiens)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01612" sboTerm="SBO:0000176" id="R_MAR01612" name="Phosphatidylglycerol Phosphate Phosphatase (Homo Sapiens)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -382969,7 +382897,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01612">
+            <rdf:Description rdf:about="#R_MAR01612">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.3.27"/>
@@ -382982,18 +382910,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02717c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02717c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02715c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02715c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="PTPMT1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01615" sboTerm="SBO:0000176" id="MAR01615" name="Phosphatidyl-CMP: Glycerophosphate Phosphatidyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01615" sboTerm="SBO:0000176" id="R_MAR01615" name="Phosphatidyl-CMP: Glycerophosphate Phosphatidyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -383002,7 +382930,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01615">
+            <rdf:Description rdf:about="#R_MAR01615">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.8.11"/>
@@ -383015,19 +382943,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02914c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01426c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02914c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01426c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01590c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02717c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01590c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02717c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="PGS1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01616" sboTerm="SBO:0000176" id="MAR01616" name="Phenylalanine Transaminase, Mitochondrial" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01616" sboTerm="SBO:0000176" id="R_MAR01616" name="Phenylalanine Transaminase, Mitochondrial" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -383035,7 +382963,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01616">
+            <rdf:Description rdf:about="#R_MAR01616">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.6.1.58"/>
@@ -383048,12 +382976,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01306m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02724m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01306m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02724m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01974m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02725m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01974m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02725m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -383062,7 +382990,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01617" sboTerm="SBO:0000185" id="MAR01617" name="Fatty Acid Transport via Diffusion" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01617" sboTerm="SBO:0000185" id="R_MAR01617" name="Fatty Acid Transport via Diffusion" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -383070,7 +382998,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01617">
+            <rdf:Description rdf:about="#R_MAR01617">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.99.1"/>
@@ -383083,13 +383011,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03884e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03884e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03884c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03884c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01618" sboTerm="SBO:0000176" id="MAR01618" name="Phosphatidylinositol 4-Phosphate 3-Kinase, Endoplasmic Reticulum" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01618" sboTerm="SBO:0000176" id="R_MAR01618" name="Phosphatidylinositol 4-Phosphate 3-Kinase, Endoplasmic Reticulum" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -383098,7 +383026,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01618">
+            <rdf:Description rdf:about="#R_MAR01618">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.1.68"/>
@@ -383111,19 +383039,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00553r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00553r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00551r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00551r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Pi3K68D"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01626" sboTerm="SBO:0000185" id="MAR01626" name="Phosphate Transporter, Peroxisome" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01626" sboTerm="SBO:0000185" id="R_MAR01626" name="Phosphate Transporter, Peroxisome" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -383131,7 +383059,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01626">
+            <rdf:Description rdf:about="#R_MAR01626">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.198"/>
@@ -383146,13 +383074,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02751x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751x" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01628" sboTerm="SBO:0000176" id="MAR01628" name="Phosphomevalonate Kinase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01628" sboTerm="SBO:0000176" id="R_MAR01628" name="Phosphomevalonate Kinase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -383161,7 +383089,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01628">
+            <rdf:Description rdf:about="#R_MAR01628">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.4.2"/>
@@ -383176,18 +383104,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00165x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00165x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00164x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00164x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Pmvk"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01633" sboTerm="SBO:0000185" id="MAR01633" name="Fatty Acid Intracellular Transport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01633" sboTerm="SBO:0000185" id="R_MAR01633" name="Fatty Acid Intracellular Transport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -383195,7 +383123,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01633">
+            <rdf:Description rdf:about="#R_MAR01633">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PMTCOAtx"/>
@@ -383207,13 +383135,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02678c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02678c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02678x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02678x" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01634" sboTerm="SBO:0000176" id="MAR01634" name="Pantothenate Kinase, Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01634" sboTerm="SBO:0000176" id="R_MAR01634" name="Pantothenate Kinase, Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -383222,7 +383150,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01634">
+            <rdf:Description rdf:about="#R_MAR01634">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.1.33"/>
@@ -383237,19 +383165,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02680m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02680m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01636m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01636m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="fbl"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01636" sboTerm="SBO:0000185" id="MAR01636" name="Pantothenate Sodium Symporter Ii" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01636" sboTerm="SBO:0000185" id="R_MAR01636" name="Pantothenate Sodium Symporter Ii" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -383258,7 +383186,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01636">
+            <rdf:Description rdf:about="#R_MAR01636">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PNTOt5"/>
@@ -383270,17 +383198,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02680e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02680e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02680c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02680c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -383289,7 +383217,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01640" sboTerm="SBO:0000185" id="MAR01640" name="Propionate Transport, Diffusion" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01640" sboTerm="SBO:0000185" id="R_MAR01640" name="Propionate Transport, Diffusion" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -383298,7 +383226,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01640">
+            <rdf:Description rdf:about="#R_MAR01640">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PPAtr"/>
@@ -383310,13 +383238,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02772e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02772e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02772c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02772c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01641" sboTerm="SBO:0000185" id="MAR01641" name="Propionate Transport, Diffusion" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01641" sboTerm="SBO:0000185" id="R_MAR01641" name="Propionate Transport, Diffusion" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -383325,7 +383253,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01641">
+            <rdf:Description rdf:about="#R_MAR01641">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PPAtm"/>
@@ -383337,13 +383265,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02772c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02772c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02772m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02772m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01643" sboTerm="SBO:0000176" id="MAR01643" name="Protoporphyrinogen Oxidase, Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01643" sboTerm="SBO:0000176" id="R_MAR01643" name="Protoporphyrinogen Oxidase, Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -383352,7 +383280,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01643">
+            <rdf:Description rdf:about="#R_MAR01643">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.3.4"/>
@@ -383365,18 +383293,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02630m" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM02804m" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02630m" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM02804m" stoichiometry="2" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040m" stoichiometry="6" constant="true"/>
-          <speciesReference species="MAM02803m" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="6" constant="true"/>
+          <speciesReference species="M_MAM02803m" stoichiometry="2" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Ppox"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01645" sboTerm="SBO:0000185" id="MAR01645" name="Transport of Pristanal, Peroxisomal" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01645" sboTerm="SBO:0000185" id="R_MAR01645" name="Transport of Pristanal, Peroxisomal" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -383384,7 +383312,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01645">
+            <rdf:Description rdf:about="#R_MAR01645">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PRISTANALtx"/>
@@ -383396,13 +383324,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00564x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00564x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00564c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00564c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01647" sboTerm="SBO:0000185" id="MAR01647" name="Transport of Pristanoyl Coenzyme A, Peroxisomal" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01647" sboTerm="SBO:0000185" id="R_MAR01647" name="Transport of Pristanoyl Coenzyme A, Peroxisomal" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -383410,7 +383338,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01647">
+            <rdf:Description rdf:about="#R_MAR01647">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PRISTCOAtx"/>
@@ -383422,13 +383350,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03887x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03887x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03887c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03887c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01648" sboTerm="SBO:0000185" id="MAR01648" name="Transport of Pristanic Acid, Peroxisomal" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01648" sboTerm="SBO:0000185" id="R_MAR01648" name="Transport of Pristanic Acid, Peroxisomal" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -383436,7 +383364,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01648">
+            <rdf:Description rdf:about="#R_MAR01648">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.13.11.27"/>
@@ -383449,13 +383377,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02766x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02766x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02766c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02766c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01649" sboTerm="SBO:0000176" id="MAR01649" name="L-Proline, 2-Oxoglutarate:Oxygen Oxidoreductase (4-Hydroxylating), Endoplasmatic Reticulum" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01649" sboTerm="SBO:0000176" id="R_MAR01649" name="L-Proline, 2-Oxoglutarate:Oxygen Oxidoreductase (4-Hydroxylating), Endoplasmatic Reticulum" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -383464,7 +383392,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01649">
+            <rdf:Description rdf:about="#R_MAR01649">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.11.2"/>
@@ -383477,17 +383405,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02630r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01306r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02770r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01306r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02770r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01596r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02943r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03037r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01596r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02943r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03037r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01650" sboTerm="SBO:0000185" id="MAR01650" name="Transport of L-Proline   via Proton Symport, Reversible, Lysosomal" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01650" sboTerm="SBO:0000185" id="R_MAR01650" name="Transport of L-Proline   via Proton Symport, Reversible, Lysosomal" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -383496,7 +383424,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01650">
+            <rdf:Description rdf:about="#R_MAR01650">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.11.2"/>
@@ -383509,18 +383437,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02770l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02770l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02770c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02770c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG13384"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01654" sboTerm="SBO:0000185" id="MAR01654" name="Transport of L-Proline, Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01654" sboTerm="SBO:0000185" id="R_MAR01654" name="Transport of L-Proline, Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -383528,7 +383456,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01654">
+            <rdf:Description rdf:about="#R_MAR01654">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.5.99.8"/>
@@ -383541,13 +383469,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02770c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02770c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02770m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02770m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01657" sboTerm="SBO:0000185" id="MAR01657" name="Phosphatidylserine Scramblase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01657" sboTerm="SBO:0000185" id="R_MAR01657" name="Phosphatidylserine Scramblase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -383556,7 +383484,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01657">
+            <rdf:Description rdf:about="#R_MAR01657">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PS_HStg"/>
@@ -383568,13 +383496,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02808c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02808c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02808g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02808g" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01658" sboTerm="SBO:0000176" id="MAR01658" name="Phosphatidylserine Decarboxylase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01658" sboTerm="SBO:0000176" id="R_MAR01658" name="Phosphatidylserine Decarboxylase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -383583,7 +383511,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01658">
+            <rdf:Description rdf:about="#R_MAR01658">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.1.1.65"/>
@@ -383596,18 +383524,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02808m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02808m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01596m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02685m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01596m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02685m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Pisd"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01661" sboTerm="SBO:0000185" id="MAR01661" name="Phosphatidylserine Flippase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01661" sboTerm="SBO:0000185" id="R_MAR01661" name="Phosphatidylserine Flippase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -383616,7 +383544,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01661">
+            <rdf:Description rdf:about="#R_MAR01661">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PSFLIP"/>
@@ -383628,15 +383556,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02808e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02808e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02808c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02808c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -383645,7 +383573,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01664" sboTerm="SBO:0000185" id="MAR01664" name="Phosphatidylserine Flippase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01664" sboTerm="SBO:0000185" id="R_MAR01664" name="Phosphatidylserine Flippase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -383654,7 +383582,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01664">
+            <rdf:Description rdf:about="#R_MAR01664">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PSFLIPm"/>
@@ -383666,15 +383594,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02808c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02808c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02808m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02808m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -383683,7 +383611,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01669" sboTerm="SBO:0000185" id="MAR01669" name="Transport of Phosphatidylserine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01669" sboTerm="SBO:0000185" id="R_MAR01669" name="Transport of Phosphatidylserine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -383691,7 +383619,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01669">
+            <rdf:Description rdf:about="#R_MAR01669">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.8.8"/>
@@ -383704,13 +383632,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02808e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02808e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02808c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02808c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01671" sboTerm="SBO:0000185" id="MAR01671" name="Pentadecanoate Transport into the Mitochondria" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01671" sboTerm="SBO:0000185" id="R_MAR01671" name="Pentadecanoate Transport into the Mitochondria" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -383719,7 +383647,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01671">
+            <rdf:Description rdf:about="#R_MAR01671">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.17"/>
@@ -383732,16 +383660,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02688c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02688c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02688m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02688m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="colt"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01680" sboTerm="SBO:0000185" id="MAR01680" name="Pyridoxamine 5&apos;-Phosphate Transport via Diffusion, Mitochondrial" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01680" sboTerm="SBO:0000185" id="R_MAR01680" name="Pyridoxamine 5&apos;-Phosphate Transport via Diffusion, Mitochondrial" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -383750,7 +383678,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01680">
+            <rdf:Description rdf:about="#R_MAR01680">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PYAM5Ptm"/>
@@ -383762,13 +383690,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02816c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02816c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02816m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02816m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01683" sboTerm="SBO:0000185" id="MAR01683" name="Pyridoxal 5&apos;-Phosphate Transport via Diffusion, Mitochondrial" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01683" sboTerm="SBO:0000185" id="R_MAR01683" name="Pyridoxal 5&apos;-Phosphate Transport via Diffusion, Mitochondrial" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -383777,7 +383705,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01683">
+            <rdf:Description rdf:about="#R_MAR01683">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PYDX5Ptm"/>
@@ -383789,13 +383717,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02814c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02814c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02814m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02814m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01686" sboTerm="SBO:0000185" id="MAR01686" name="Retinoate Transport, Nuclear" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01686" sboTerm="SBO:0000185" id="R_MAR01686" name="Retinoate Transport, Nuclear" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -383804,7 +383732,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01686">
+            <rdf:Description rdf:about="#R_MAR01686">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.5.1.12"/>
@@ -383817,13 +383745,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02833c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02833c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02833n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02833n" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01688" sboTerm="SBO:0000185" id="MAR01688" name="13-Cis-Retinoic Acid Transport, Nuclear" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01688" sboTerm="SBO:0000185" id="R_MAR01688" name="13-Cis-Retinoic Acid Transport, Nuclear" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -383832,7 +383760,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01688">
+            <rdf:Description rdf:about="#R_MAR01688">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.2.2"/>
@@ -383845,13 +383773,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00350c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00350c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00350n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00350n" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01690" sboTerm="SBO:0000176" id="MAR01690" name="Retinol Dehydrogenase (9-Cis, NADPH)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01690" sboTerm="SBO:0000176" id="R_MAR01690" name="Retinol Dehydrogenase (9-Cis, NADPH)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -383860,7 +383788,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01690">
+            <rdf:Description rdf:about="#R_MAR01690">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.105"/>
@@ -383875,13 +383803,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01232c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01232c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01230c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01230c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -383895,7 +383823,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01698" sboTerm="SBO:0000185" id="MAR01698" name="Fatty Acid Retinol Efflux" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01698" sboTerm="SBO:0000185" id="R_MAR01698" name="Fatty Acid Retinol Efflux" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -383904,7 +383832,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01698">
+            <rdf:Description rdf:about="#R_MAR01698">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/RETFAt"/>
@@ -383916,13 +383844,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02838c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02838c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02838e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02838e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01705" sboTerm="SBO:0000185" id="MAR01705" name="Fatty Acid Retinol Efflux (9-Cis)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01705" sboTerm="SBO:0000185" id="R_MAR01705" name="Fatty Acid Retinol Efflux (9-Cis)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -383931,7 +383859,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01705">
+            <rdf:Description rdf:about="#R_MAR01705">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/RETFAt1"/>
@@ -383943,13 +383871,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03315c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03315c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03315e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03315e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01707" sboTerm="SBO:0000185" id="MAR01707" name="Ribose Transport in via Proton Symporter" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01707" sboTerm="SBO:0000185" id="R_MAR01707" name="Ribose Transport in via Proton Symporter" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -383958,7 +383886,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01707">
+            <rdf:Description rdf:about="#R_MAR01707">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/RIBt2"/>
@@ -383970,15 +383898,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02843e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02843e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02843c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02843c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01709" sboTerm="SBO:0000185" id="MAR01709" name="Sterol Carrier Protein 2" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01709" sboTerm="SBO:0000185" id="R_MAR01709" name="Sterol Carrier Protein 2" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -383987,7 +383915,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01709">
+            <rdf:Description rdf:about="#R_MAR01709">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.5.1.10"/>
@@ -384000,16 +383928,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03554c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03554x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03554x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="ScpX"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01711" sboTerm="SBO:0000176" id="MAR01711" name="Peroxisomal Thiolase 2" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01711" sboTerm="SBO:0000176" id="R_MAR01711" name="Peroxisomal Thiolase 2" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -384018,7 +383946,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01711">
+            <rdf:Description rdf:about="#R_MAR01711">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.7.4"/>
@@ -384031,20 +383959,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00755x" stoichiometry="7" constant="true"/>
-          <speciesReference species="MAM01596x" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM01597x" stoichiometry="8" constant="true"/>
-          <speciesReference species="MAM02040x" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM00755x" stoichiometry="7" constant="true"/>
+          <speciesReference species="M_MAM01596x" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM01597x" stoichiometry="8" constant="true"/>
+          <speciesReference species="M_MAM02040x" stoichiometry="2" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02774x" stoichiometry="8" constant="true"/>
-          <speciesReference species="MAM03548x" stoichiometry="7" constant="true"/>
+          <speciesReference species="M_MAM02774x" stoichiometry="8" constant="true"/>
+          <speciesReference species="M_MAM03548x" stoichiometry="7" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="ScpX"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01712" sboTerm="SBO:0000185" id="MAR01712" name="Ser/Thr Transport (from Golgi to Lysosome)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01712" sboTerm="SBO:0000185" id="R_MAR01712" name="Ser/Thr Transport (from Golgi to Lysosome)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -384053,7 +383981,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01712">
+            <rdf:Description rdf:about="#R_MAR01712">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/Ser_Thrtg"/>
@@ -384065,13 +383993,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03395g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03395g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03395l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03395l" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01719" sboTerm="SBO:0000185" id="MAR01719" name="Fatty Acid Intracellular Transport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01719" sboTerm="SBO:0000185" id="R_MAR01719" name="Fatty Acid Intracellular Transport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -384079,7 +384007,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01719">
+            <rdf:Description rdf:about="#R_MAR01719">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.99.7"/>
@@ -384092,13 +384020,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02941c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02941c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02941x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02941x" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01721" sboTerm="SBO:0000185" id="MAR01721" name="Transport into the Mitochondria (Carnitine)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01721" sboTerm="SBO:0000185" id="R_MAR01721" name="Transport into the Mitochondria (Carnitine)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -384106,7 +384034,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01721">
+            <rdf:Description rdf:about="#R_MAR01721">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.99.7"/>
@@ -384119,16 +384047,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00107c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00107c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00107m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00107m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="colt"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01724" sboTerm="SBO:0000176" id="MAR01724" name="4-Hydroxycinnamate Formation" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01724" sboTerm="SBO:0000176" id="R_MAR01724" name="4-Hydroxycinnamate Formation" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -384137,7 +384065,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01724">
+            <rdf:Description rdf:about="#R_MAR01724">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/T4HCINNMFM"/>
@@ -384149,14 +384077,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01004m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01004m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00981m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00981m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01728" sboTerm="SBO:0000185" id="MAR01728" name="Triacylglycerol Transport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01728" sboTerm="SBO:0000185" id="R_MAR01728" name="Triacylglycerol Transport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -384164,26 +384092,27 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01728">
+            <rdf:Description rdf:about="#R_MAR01728">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.6.2"/>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/TAGt"/>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR104712"/>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/TAGt"/>
+                  <rdf:li rdf:resource="https://identifiers.org/vmhreaction/TAGHSTDe"/>
                 </rdf:Bag>
               </bqbiol:is>
             </rdf:Description>
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02959e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02959e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02959c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02959c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01731" sboTerm="SBO:0000185" id="MAR01731" name="Bile Acid Intracellular Transport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01731" sboTerm="SBO:0000185" id="R_MAR01731" name="Bile Acid Intracellular Transport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -384191,7 +384120,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01731">
+            <rdf:Description rdf:about="#R_MAR01731">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.5"/>
@@ -384204,13 +384133,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02963e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02963e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02963c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02963c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01732" sboTerm="SBO:0000185" id="MAR01732" name="Bile Acid Intracellular Transport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01732" sboTerm="SBO:0000185" id="R_MAR01732" name="Bile Acid Intracellular Transport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -384218,7 +384147,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01732">
+            <rdf:Description rdf:about="#R_MAR01732">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.2.1.26"/>
@@ -384231,13 +384160,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02963x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02963x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02963c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02963c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01733" sboTerm="SBO:0000185" id="MAR01733" name="Bile Acid Intracellular Transport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01733" sboTerm="SBO:0000185" id="R_MAR01733" name="Bile Acid Intracellular Transport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -384245,7 +384174,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01733">
+            <rdf:Description rdf:about="#R_MAR01733">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.17"/>
@@ -384258,13 +384187,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02962e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02962e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02962c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02962c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01734" sboTerm="SBO:0000185" id="MAR01734" name="Bile Acid Intracellular Transport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01734" sboTerm="SBO:0000185" id="R_MAR01734" name="Bile Acid Intracellular Transport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -384272,7 +384201,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01734">
+            <rdf:Description rdf:about="#R_MAR01734">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/TDCHOLAtx"/>
@@ -384284,13 +384213,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02962x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02962x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02962c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02962c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01736" sboTerm="SBO:0000176" id="MAR01736" name="Carnitine Transferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01736" sboTerm="SBO:0000176" id="R_MAR01736" name="Carnitine Transferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -384298,7 +384227,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01736">
+            <rdf:Description rdf:about="#R_MAR01736">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/TETPENT3CPT2"/>
@@ -384310,18 +384239,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00133m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00133m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02348m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00134m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00134m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CPT2"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01755" sboTerm="SBO:0000185" id="MAR01755" name="Transport into the Mitochondria (Carnitine)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01755" sboTerm="SBO:0000185" id="R_MAR01755" name="Transport into the Mitochondria (Carnitine)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -384329,7 +384258,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01755">
+            <rdf:Description rdf:about="#R_MAR01755">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/TETPENT3CRNt"/>
@@ -384341,16 +384270,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00133c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00133c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00133m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00133m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="colt"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01757" sboTerm="SBO:0000176" id="MAR01757" name="Carnitine Transferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01757" sboTerm="SBO:0000176" id="R_MAR01757" name="Carnitine Transferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -384358,7 +384287,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01757">
+            <rdf:Description rdf:about="#R_MAR01757">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/TETPENT6CPT2"/>
@@ -384370,18 +384299,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00109m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00109m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02348m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00110m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00110m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CPT2"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01763" sboTerm="SBO:0000185" id="MAR01763" name="Transport into the Mitochondria (Carnitine)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01763" sboTerm="SBO:0000185" id="R_MAR01763" name="Transport into the Mitochondria (Carnitine)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -384389,7 +384318,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01763">
+            <rdf:Description rdf:about="#R_MAR01763">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.6.1.15"/>
@@ -384402,16 +384331,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00109c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00109c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00109m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00109m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="colt"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01773" sboTerm="SBO:0000176" id="MAR01773" name="Carnitine Transferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01773" sboTerm="SBO:0000176" id="R_MAR01773" name="Carnitine Transferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -384419,7 +384348,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01773">
+            <rdf:Description rdf:about="#R_MAR01773">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.6.1.15"/>
@@ -384432,18 +384361,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00130m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00130m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02348m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00131m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00131m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CPT2"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01775" sboTerm="SBO:0000185" id="MAR01775" name="Transport into the Mitochondria (Carnitine)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01775" sboTerm="SBO:0000185" id="R_MAR01775" name="Transport into the Mitochondria (Carnitine)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -384451,7 +384380,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01775">
+            <rdf:Description rdf:about="#R_MAR01775">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/TETTET6CRNt"/>
@@ -384463,16 +384392,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00130c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00130c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00130m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00130m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="colt"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01779" sboTerm="SBO:0000185" id="MAR01779" name="Lipid, Flip-Flop Intracellular Transport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01779" sboTerm="SBO:0000185" id="R_MAR01779" name="Lipid, Flip-Flop Intracellular Transport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -384481,7 +384410,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01779">
+            <rdf:Description rdf:about="#R_MAR01779">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.21"/>
@@ -384494,13 +384423,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00752m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00752m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00752x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00752x" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01780" sboTerm="SBO:0000185" id="MAR01780" name="Tetrahydrofolate Transport via Anion Antiport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01780" sboTerm="SBO:0000185" id="R_MAR01780" name="Tetrahydrofolate Transport via Anion Antiport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -384509,7 +384438,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01780">
+            <rdf:Description rdf:about="#R_MAR01780">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/THFt2"/>
@@ -384521,12 +384450,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02980e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02980e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02980c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02980c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -384535,7 +384464,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01782" sboTerm="SBO:0000185" id="MAR01782" name="Thiamine Monophosphate Transport in via Anion Antiport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01782" sboTerm="SBO:0000185" id="R_MAR01782" name="Thiamine Monophosphate Transport in via Anion Antiport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -384544,7 +384473,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01782">
+            <rdf:Description rdf:about="#R_MAR01782">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/THMMPt4"/>
@@ -384556,12 +384485,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02983e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02983e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02983c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02983c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -384570,7 +384499,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01788" sboTerm="SBO:0000185" id="MAR01788" name="Thiamine Monophosphate Transport, Mitochondrial" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01788" sboTerm="SBO:0000185" id="R_MAR01788" name="Thiamine Monophosphate Transport, Mitochondrial" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -384579,7 +384508,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01788">
+            <rdf:Description rdf:about="#R_MAR01788">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/THMMPtm"/>
@@ -384591,15 +384520,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02983c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02983c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02983m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02983m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01789" sboTerm="SBO:0000185" id="MAR01789" name="Thiamine Diphosphate Transport in via Anion Antiport, Mitochondria" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01789" sboTerm="SBO:0000185" id="R_MAR01789" name="Thiamine Diphosphate Transport in via Anion Antiport, Mitochondria" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -384608,7 +384537,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01789">
+            <rdf:Description rdf:about="#R_MAR01789">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/THMPPtm"/>
@@ -384620,15 +384549,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040m" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02984c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02984c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02984m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02984m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01791" sboTerm="SBO:0000185" id="MAR01791" name="Thiamine Transport in via Proton Symport, Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01791" sboTerm="SBO:0000185" id="R_MAR01791" name="Thiamine Transport in via Proton Symport, Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -384637,7 +384566,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01791">
+            <rdf:Description rdf:about="#R_MAR01791">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.21"/>
@@ -384650,15 +384579,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02982c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039i" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02982c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039i" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02982m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02982m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01793" sboTerm="SBO:0000185" id="MAR01793" name="Thiamine Triphosphate Transport in via Anion Antiport" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01793" sboTerm="SBO:0000185" id="R_MAR01793" name="Thiamine Triphosphate Transport in via Anion Antiport" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -384667,7 +384596,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01793">
+            <rdf:Description rdf:about="#R_MAR01793">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/THMTPt"/>
@@ -384679,12 +384608,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040e" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM02985c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040e" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM02985c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040c" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM02985e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM02985e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -384693,7 +384622,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01795" sboTerm="SBO:0000185" id="MAR01795" name="Fatty Acid Intracellular Transport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01795" sboTerm="SBO:0000185" id="R_MAR01795" name="Fatty Acid Intracellular Transport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -384701,7 +384630,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01795">
+            <rdf:Description rdf:about="#R_MAR01795">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/TMNDNCCOAtx"/>
@@ -384713,13 +384642,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00103c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00103c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00103x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00103x" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01799" sboTerm="SBO:0000185" id="MAR01799" name="Transport into the Mitochondria (Carnitine)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01799" sboTerm="SBO:0000185" id="R_MAR01799" name="Transport into the Mitochondria (Carnitine)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -384727,7 +384656,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01799">
+            <rdf:Description rdf:about="#R_MAR01799">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.11.1.7"/>
@@ -384740,16 +384669,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00102c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00102c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00102m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00102m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="colt"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01801" sboTerm="SBO:0000176" id="MAR01801" name="Thioredoxin (Ubiquinone 10) Reductase (NADPH)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01801" sboTerm="SBO:0000176" id="R_MAR01801" name="Thioredoxin (Ubiquinone 10) Reductase (NADPH)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -384758,7 +384687,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01801">
+            <rdf:Description rdf:about="#R_MAR01801">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.8.1.9"/>
@@ -384771,16 +384700,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03103c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03103c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03102c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03102c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01808" sboTerm="SBO:0000176" id="MAR01808" name="Thioredoxin (Ubiquinone 10) Reductase (NADH)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01808" sboTerm="SBO:0000176" id="R_MAR01808" name="Thioredoxin (Ubiquinone 10) Reductase (NADH)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -384789,7 +384718,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01808">
+            <rdf:Description rdf:about="#R_MAR01808">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.8.1.9"/>
@@ -384802,16 +384731,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03103c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03103c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02552c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03102c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03102c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01812" sboTerm="SBO:0000176" id="MAR01812" name="Alpha, Alpha-Trehalase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01812" sboTerm="SBO:0000176" id="R_MAR01812" name="Alpha, Alpha-Trehalase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -384819,7 +384748,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01812">
+            <rdf:Description rdf:about="#R_MAR01812">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.2.1.28"/>
@@ -384832,11 +384761,11 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03039c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01965c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01965c" stoichiometry="2" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -384845,7 +384774,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01814" sboTerm="SBO:0000185" id="MAR01814" name="Transport into the Mitochondria (Carnitine)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01814" sboTerm="SBO:0000185" id="R_MAR01814" name="Transport into the Mitochondria (Carnitine)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -384853,7 +384782,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01814">
+            <rdf:Description rdf:about="#R_MAR01814">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.1.28"/>
@@ -384866,16 +384795,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02974c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02974c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02974m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02974m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="colt"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01818" sboTerm="SBO:0000176" id="MAR01818" name="UDPglucose:Dolichyl-Phosphate Beta-D-Glucosyltransferase (Liver)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01818" sboTerm="SBO:0000176" id="R_MAR01818" name="UDPglucose:Dolichyl-Phosphate Beta-D-Glucosyltransferase (Liver)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -384884,7 +384813,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01818">
+            <rdf:Description rdf:about="#R_MAR01818">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.117"/>
@@ -384898,18 +384827,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01733c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03108c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01733c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03108c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03106c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01731c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01731c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="wol"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01820" sboTerm="SBO:0000176" id="MAR01820" name="UDP-Glucuronosyltransferase 1-10 Precursor, Microsomal" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01820" sboTerm="SBO:0000176" id="R_MAR01820" name="UDP-Glucuronosyltransferase 1-10 Precursor, Microsomal" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -384918,7 +384847,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01820">
+            <rdf:Description rdf:about="#R_MAR01820">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.17"/>
@@ -384931,12 +384860,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01396r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03109r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01396r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03109r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01398r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01398r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -384950,7 +384879,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR01821" sboTerm="SBO:0000185" id="MAR01821" name="Valine Reversible Mitochondrial Transport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01821" sboTerm="SBO:0000185" id="R_MAR01821" name="Valine Reversible Mitochondrial Transport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -384959,7 +384888,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01821">
+            <rdf:Description rdf:about="#R_MAR01821">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/VALt5m"/>
@@ -384971,13 +384900,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03135c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03135c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03135m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03135m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01822" sboTerm="SBO:0000185" id="MAR01822" name="Vitamin D3 Transport from Mitochondria" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01822" sboTerm="SBO:0000185" id="R_MAR01822" name="Vitamin D3 Transport from Mitochondria" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -384985,7 +384914,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01822">
+            <rdf:Description rdf:about="#R_MAR01822">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/VITD3tm"/>
@@ -384997,13 +384926,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03142m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03142m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03142c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03142c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01823" sboTerm="SBO:0000185" id="MAR01823" name="Vitamin D3 Transport in Mitochondria" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01823" sboTerm="SBO:0000185" id="R_MAR01823" name="Vitamin D3 Transport in Mitochondria" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -385011,7 +384940,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01823">
+            <rdf:Description rdf:about="#R_MAR01823">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/VITD3tm3"/>
@@ -385023,13 +384952,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03142c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03142c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03142m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03142m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01824" sboTerm="SBO:0000185" id="MAR01824" name="27 Hydroxy Cholesterol Transport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01824" sboTerm="SBO:0000185" id="R_MAR01824" name="27 Hydroxy Cholesterol Transport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -385037,7 +384966,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01824">
+            <rdf:Description rdf:about="#R_MAR01824">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/XOL27OHtm"/>
@@ -385049,13 +384978,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00623r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00623r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00623m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00623m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01825" sboTerm="SBO:0000185" id="MAR01825" name="Lipid, Flip-Flop Intracellular Transport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01825" sboTerm="SBO:0000185" id="R_MAR01825" name="Lipid, Flip-Flop Intracellular Transport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -385064,7 +384993,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01825">
+            <rdf:Description rdf:about="#R_MAR01825">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/XOL7AH2tr"/>
@@ -385076,13 +385005,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01095c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01095c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01095r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01095r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01826" sboTerm="SBO:0000185" id="MAR01826" name="Lipid, Flip-Flop Intracellular Transport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01826" sboTerm="SBO:0000185" id="R_MAR01826" name="Lipid, Flip-Flop Intracellular Transport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -385091,7 +385020,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01826">
+            <rdf:Description rdf:about="#R_MAR01826">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/XOLDIOLONEtm"/>
@@ -385103,13 +385032,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01178m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01178m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01178r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01178r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01827" sboTerm="SBO:0000185" id="MAR01827" name="Cholesterol Ester Transporter" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01827" sboTerm="SBO:0000185" id="R_MAR01827" name="Cholesterol Ester Transporter" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -385118,25 +385047,26 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01827">
+            <rdf:Description rdf:about="#R_MAR01827">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/XOLEST2te"/>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR105236"/>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/XOLEST2te"/>
+                  <rdf:li rdf:resource="https://identifiers.org/vmhreaction/XOLEST2HSTDle"/>
                 </rdf:Bag>
               </bqbiol:is>
             </rdf:Description>
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01451e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01451e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01451c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01451c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01828" sboTerm="SBO:0000185" id="MAR01828" name="Cholesterol Ester Transporter" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01828" sboTerm="SBO:0000185" id="R_MAR01828" name="Cholesterol Ester Transporter" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -385145,7 +385075,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01828">
+            <rdf:Description rdf:about="#R_MAR01828">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/XOLESTte"/>
@@ -385157,13 +385087,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM04081e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04081e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM04081c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04081c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01829" sboTerm="SBO:0000185" id="MAR01829" name="24 Trihydroxy Cholesterol Transport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01829" sboTerm="SBO:0000185" id="R_MAR01829" name="24 Trihydroxy Cholesterol Transport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -385171,7 +385101,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01829">
+            <rdf:Description rdf:about="#R_MAR01829">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.7"/>
@@ -385184,13 +385114,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01446r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01446r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01446c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01446c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01849" sboTerm="SBO:0000185" id="MAR01849" name="24 Trihydroxy Cholesterol Transport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01849" sboTerm="SBO:0000185" id="R_MAR01849" name="24 Trihydroxy Cholesterol Transport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -385198,7 +385128,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01849">
+            <rdf:Description rdf:about="#R_MAR01849">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.7"/>
@@ -385211,13 +385141,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01446c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01446c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01446e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01446e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01851" sboTerm="SBO:0000185" id="MAR01851" name="25 Trihydroxy Cholesterol Transport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01851" sboTerm="SBO:0000185" id="R_MAR01851" name="25 Trihydroxy Cholesterol Transport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -385225,7 +385155,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01851">
+            <rdf:Description rdf:about="#R_MAR01851">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.7"/>
@@ -385238,13 +385168,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01447r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01447r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01447c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01447c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01856" sboTerm="SBO:0000185" id="MAR01856" name="25 Trihydroxy Cholesterol Transport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01856" sboTerm="SBO:0000185" id="R_MAR01856" name="25 Trihydroxy Cholesterol Transport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -385252,7 +385182,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01856">
+            <rdf:Description rdf:about="#R_MAR01856">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.7"/>
@@ -385265,13 +385195,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01447c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01447c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01447e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01447e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01858" sboTerm="SBO:0000185" id="MAR01858" name="27 Trihydroxy Cholesterol Transport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01858" sboTerm="SBO:0000185" id="R_MAR01858" name="27 Trihydroxy Cholesterol Transport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -385279,7 +385209,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01858">
+            <rdf:Description rdf:about="#R_MAR01858">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/XOLTRI27tc"/>
@@ -385291,13 +385221,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01448r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01448r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01448c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01448c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01860" sboTerm="SBO:0000185" id="MAR01860" name="27 Trihydroxy Cholesterol Transport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01860" sboTerm="SBO:0000185" id="R_MAR01860" name="27 Trihydroxy Cholesterol Transport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -385305,7 +385235,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01860">
+            <rdf:Description rdf:about="#R_MAR01860">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/XOLTRI27te"/>
@@ -385317,13 +385247,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01448c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01448c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01448e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01448e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01869" sboTerm="SBO:0000627" id="MAR01869" name="Exchange of 4-Ammoniobutanal" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01869" sboTerm="SBO:0000627" id="R_MAR01869" name="Exchange of 4-Ammoniobutanal" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -385331,7 +385261,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01869">
+            <rdf:Description rdf:about="#R_MAR01869">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_4abutn_e"/>
@@ -385343,10 +385273,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00969e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00969e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR01871" sboTerm="SBO:0000627" id="MAR01871" name="Exchange of 7, 8-Dihydroneopterin 3-Triphosphate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01871" sboTerm="SBO:0000627" id="R_MAR01871" name="Exchange of 7, 8-Dihydroneopterin 3-Triphosphate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -385354,7 +385284,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01871">
+            <rdf:Description rdf:about="#R_MAR01871">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_ahdt_e"/>
@@ -385366,10 +385296,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01155e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01155e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR01873" sboTerm="SBO:0000627" id="MAR01873" name="Exchange of CTP" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01873" sboTerm="SBO:0000627" id="R_MAR01873" name="Exchange of CTP" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -385377,7 +385307,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01873">
+            <rdf:Description rdf:about="#R_MAR01873">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_ctp_e"/>
@@ -385389,10 +385319,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01623e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01623e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR01912" sboTerm="SBO:0000627" id="MAR01912" name="Exchange of dGMP" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01912" sboTerm="SBO:0000627" id="R_MAR01912" name="Exchange of dGMP" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -385400,7 +385330,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01912">
+            <rdf:Description rdf:about="#R_MAR01912">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_dgmp_e"/>
@@ -385412,10 +385342,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01686e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01686e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR01918" sboTerm="SBO:0000627" id="MAR01918" name="Exchange of dGTP" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01918" sboTerm="SBO:0000627" id="R_MAR01918" name="Exchange of dGTP" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -385423,7 +385353,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01918">
+            <rdf:Description rdf:about="#R_MAR01918">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_dgtp_e"/>
@@ -385435,10 +385365,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01688e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01688e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR01921" sboTerm="SBO:0000627" id="MAR01921" name="Exchange of Glycerone" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01921" sboTerm="SBO:0000627" id="R_MAR01921" name="Exchange of Glycerone" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -385446,7 +385376,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01921">
+            <rdf:Description rdf:about="#R_MAR01921">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_dha_e"/>
@@ -385458,10 +385388,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01984e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01984e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR01922" sboTerm="SBO:0000627" id="MAR01922" name="Exchange of Glycerone Phosphate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01922" sboTerm="SBO:0000627" id="R_MAR01922" name="Exchange of Glycerone Phosphate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -385469,7 +385399,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01922">
+            <rdf:Description rdf:about="#R_MAR01922">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_dhap_e"/>
@@ -385481,10 +385411,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01690e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01690e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR01923" sboTerm="SBO:0000627" id="MAR01923" name="Exchange of dTMP" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01923" sboTerm="SBO:0000627" id="R_MAR01923" name="Exchange of dTMP" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -385492,7 +385422,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01923">
+            <rdf:Description rdf:about="#R_MAR01923">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_dtmp_e"/>
@@ -385504,10 +385434,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01752e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01752e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR01938" sboTerm="SBO:0000627" id="MAR01938" name="Exchange of dTTP" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01938" sboTerm="SBO:0000627" id="R_MAR01938" name="Exchange of dTTP" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -385515,7 +385445,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01938">
+            <rdf:Description rdf:about="#R_MAR01938">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_dttp_e"/>
@@ -385527,10 +385457,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01753e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01753e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR01939" sboTerm="SBO:0000627" id="MAR01939" name="Exchange of Flavin Adenine Dinucleotide Oxidized" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01939" sboTerm="SBO:0000627" id="R_MAR01939" name="Exchange of Flavin Adenine Dinucleotide Oxidized" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -385538,7 +385468,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01939">
+            <rdf:Description rdf:about="#R_MAR01939">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_fad_e"/>
@@ -385550,10 +385480,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01802e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01802e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR01946" sboTerm="SBO:0000627" id="MAR01946" name="Exchange of Formaldehyde" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01946" sboTerm="SBO:0000627" id="R_MAR01946" name="Exchange of Formaldehyde" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -385561,7 +385491,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01946">
+            <rdf:Description rdf:about="#R_MAR01946">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_fald_e"/>
@@ -385573,10 +385503,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01831e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01831e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR01947" sboTerm="SBO:0000627" id="MAR01947" name="Exchange of Alpha-D-Glucose 1-Phosphate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01947" sboTerm="SBO:0000627" id="R_MAR01947" name="Exchange of Alpha-D-Glucose 1-Phosphate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -385584,7 +385514,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01947">
+            <rdf:Description rdf:about="#R_MAR01947">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_g1p_e"/>
@@ -385596,10 +385526,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01967e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01967e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR01954" sboTerm="SBO:0000627" id="MAR01954" name="Exchange of Isomaltose" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01954" sboTerm="SBO:0000627" id="R_MAR01954" name="Exchange of Isomaltose" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -385607,7 +385537,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01954">
+            <rdf:Description rdf:about="#R_MAR01954">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_isomal_e"/>
@@ -385618,10 +385548,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02185e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02185e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR01955" sboTerm="SBO:0000627" id="MAR01955" name="Exchange of 3-Keto-Beta-D-Galactose" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01955" sboTerm="SBO:0000627" id="R_MAR01955" name="Exchange of 3-Keto-Beta-D-Galactose" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -385629,7 +385559,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01955">
+            <rdf:Description rdf:about="#R_MAR01955">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_HC01440_e"/>
@@ -385641,10 +385571,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00810e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00810e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR01956" sboTerm="SBO:0000627" id="MAR01956" name="Exchange of Lactose-6P" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01956" sboTerm="SBO:0000627" id="R_MAR01956" name="Exchange of Lactose-6P" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -385652,7 +385582,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01956">
+            <rdf:Description rdf:about="#R_MAR01956">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_HC01441_e"/>
@@ -385664,10 +385594,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02333e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02333e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR01957" sboTerm="SBO:0000627" id="MAR01957" name="Exchange of 3-Ketolactose" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01957" sboTerm="SBO:0000627" id="R_MAR01957" name="Exchange of 3-Ketolactose" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -385675,7 +385605,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01957">
+            <rdf:Description rdf:about="#R_MAR01957">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_HC01446_e"/>
@@ -385687,10 +385617,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00812e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00812e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR01961" sboTerm="SBO:0000627" id="MAR01961" name="Exchange of Gamma-Glutamyl-Beta-Cyanoalanine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01961" sboTerm="SBO:0000627" id="R_MAR01961" name="Exchange of Gamma-Glutamyl-Beta-Cyanoalanine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -385698,7 +385628,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01961">
+            <rdf:Description rdf:about="#R_MAR01961">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_HC01577_e"/>
@@ -385710,10 +385640,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01926e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01926e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR01964" sboTerm="SBO:0000627" id="MAR01964" name="Exchange of Uroporphyrinogeni" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01964" sboTerm="SBO:0000627" id="R_MAR01964" name="Exchange of Uroporphyrinogeni" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -385721,7 +385651,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01964">
+            <rdf:Description rdf:about="#R_MAR01964">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_HC01609_e"/>
@@ -385733,10 +385663,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03127e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03127e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR01965" sboTerm="SBO:0000627" id="MAR01965" name="Exchange of Coproporphyrinogeni" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01965" sboTerm="SBO:0000627" id="R_MAR01965" name="Exchange of Coproporphyrinogeni" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -385744,7 +385674,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01965">
+            <rdf:Description rdf:about="#R_MAR01965">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_cpppg1_e"/>
@@ -385756,10 +385686,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01605e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01605e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR01966" sboTerm="SBO:0000627" id="MAR01966" name="Exchange of Gamma-Glutamyl-3-Aminopropiononitrile" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01966" sboTerm="SBO:0000627" id="R_MAR01966" name="Exchange of Gamma-Glutamyl-3-Aminopropiononitrile" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -385767,7 +385697,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01966">
+            <rdf:Description rdf:about="#R_MAR01966">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_HC01700_e"/>
@@ -385779,10 +385709,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01925e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01925e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR01972" sboTerm="SBO:0000627" id="MAR01972" name="Exchange of Gm2-Pool" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01972" sboTerm="SBO:0000627" id="R_MAR01972" name="Exchange of Gm2-Pool" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -385790,7 +385720,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01972">
+            <rdf:Description rdf:about="#R_MAR01972">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_HC02160_e"/>
@@ -385803,10 +385733,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02011e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02011e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR01975" sboTerm="SBO:0000627" id="MAR01975" name="Exchange of Gm1-Pool" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01975" sboTerm="SBO:0000627" id="R_MAR01975" name="Exchange of Gm1-Pool" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -385814,7 +385744,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01975">
+            <rdf:Description rdf:about="#R_MAR01975">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_HC02161_e"/>
@@ -385826,10 +385756,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02008e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02008e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR01984" sboTerm="SBO:0000627" id="MAR01984" name="Exchange of 5-O-Phosphonato-Alpha-D-Ribofuranosyl Diphosphate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01984" sboTerm="SBO:0000627" id="R_MAR01984" name="Exchange of 5-O-Phosphonato-Alpha-D-Ribofuranosyl Diphosphate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -385837,7 +385767,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01984">
+            <rdf:Description rdf:about="#R_MAR01984">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_prpp_e"/>
@@ -385849,10 +385779,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02806e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02806e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR01986" sboTerm="SBO:0000627" id="MAR01986" name="Exchange of [ (2R, 3S, 4R, 5R)-5- (2, 4-Dioxo-1, 2, 3, 4-Tetrahydropyrimidin-1-Yl)-3, 4-Dihydroxyoxolan-2-Yl]Methyl {[ (3R, 4S, 5S, 6R)-3, 4, 5-Trihydroxy-6- (Hydroxymethyl)Oxan-2-Yl Phosphonato]Oxy}Phosphonate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01986" sboTerm="SBO:0000627" id="R_MAR01986" name="Exchange of [ (2R, 3S, 4R, 5R)-5- (2, 4-Dioxo-1, 2, 3, 4-Tetrahydropyrimidin-1-Yl)-3, 4-Dihydroxyoxolan-2-Yl]Methyl {[ (3R, 4S, 5S, 6R)-3, 4, 5-Trihydroxy-6- (Hydroxymethyl)Oxan-2-Yl Phosphonato]Oxy}Phosphonate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -385860,7 +385790,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01986">
+            <rdf:Description rdf:about="#R_MAR01986">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_udpg_e"/>
@@ -385872,10 +385802,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03108e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03108e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR02023" sboTerm="SBO:0000176" id="MAR02023" name="L-Arginine, NADPH:Oxygen Oxidoreductase (Nitric-Oxide-Forming)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02023" sboTerm="SBO:0000176" id="R_MAR02023" name="L-Arginine, NADPH:Oxygen Oxidoreductase (Nitric-Oxide-Forming)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -385884,7 +385814,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02023">
+            <rdf:Description rdf:about="#R_MAR02023">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.13.39"/>
@@ -385896,21 +385826,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01365c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01365c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="2" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01588c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02609c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01588c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02609c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Nos"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02027" sboTerm="SBO:0000176" id="MAR02027" name="L-Cysteine L-Homocysteine-Lyase (Deaminating)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02027" sboTerm="SBO:0000176" id="R_MAR02027" name="L-Cysteine L-Homocysteine-Lyase (Deaminating)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -385919,7 +385849,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02027">
+            <rdf:Description rdf:about="#R_MAR02027">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.4.1.1"/>
@@ -385932,20 +385862,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01628c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01628c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02042c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02579c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02819c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02042c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02579c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02819c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Eip55E"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02028" sboTerm="SBO:0000176" id="MAR02028" name="Trans-Hexadec-2-Enoyl Coenzyme A Reductase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02028" sboTerm="SBO:0000176" id="R_MAR02028" name="Trans-Hexadec-2-Enoyl Coenzyme A Reductase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -385954,7 +385884,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02028">
+            <rdf:Description rdf:about="#R_MAR02028">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.1.38"/>
@@ -385967,19 +385897,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02554m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02678m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02678m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00051m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00051m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG16935"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02035" sboTerm="SBO:0000176" id="MAR02035" name="Palmitoyl Coenzyme A:Oxygen 2-Oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02035" sboTerm="SBO:0000176" id="R_MAR02035" name="Palmitoyl Coenzyme A:Oxygen 2-Oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -385988,7 +385918,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02035">
+            <rdf:Description rdf:about="#R_MAR02035">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.99.3"/>
@@ -386000,12 +385930,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02678m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03103m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02678m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03103m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00051m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03102m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00051m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03102m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -386016,7 +385946,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02119" sboTerm="SBO:0000176" id="MAR02119" name="L-Tryptophan, Tetrahydrobiopterin:Oxygen Oxidoreductase (5-Hydroxylating)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02119" sboTerm="SBO:0000176" id="R_MAR02119" name="L-Tryptophan, Tetrahydrobiopterin:Oxygen Oxidoreductase (5-Hydroxylating)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -386024,7 +385954,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02119">
+            <rdf:Description rdf:about="#R_MAR02119">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.16.4"/>
@@ -386036,20 +385966,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02978c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03089c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02978c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03089c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01107c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01698c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01107c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01698c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Trh"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02120" sboTerm="SBO:0000176" id="MAR02120" name="2-Deoxyguanosine 5-Triphosphate Pyrophosphohydrolase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02120" sboTerm="SBO:0000176" id="R_MAR02120" name="2-Deoxyguanosine 5-Triphosphate Pyrophosphohydrolase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -386058,7 +385988,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02120">
+            <rdf:Description rdf:about="#R_MAR02120">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.6.1.19"/>
@@ -386073,19 +386003,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01688e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01688e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01686e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01686e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG8891"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02121" sboTerm="SBO:0000176" id="MAR02121" name="Palmitoyl Coenzyme A:L-Carnitine O-Palmitoyltransferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02121" sboTerm="SBO:0000176" id="R_MAR02121" name="Palmitoyl Coenzyme A:L-Carnitine O-Palmitoyltransferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -386094,7 +386024,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02121">
+            <rdf:Description rdf:about="#R_MAR02121">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.21"/>
@@ -386107,12 +386037,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02348x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02678x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02678x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01597x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02411x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02411x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:and>
@@ -386121,7 +386051,7 @@
           </fbc:and>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02122" sboTerm="SBO:0000176" id="MAR02122" name="Palmitoyl Coenzyme A:L-Carnitine O-Palmitoyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02122" sboTerm="SBO:0000176" id="R_MAR02122" name="Palmitoyl Coenzyme A:L-Carnitine O-Palmitoyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -386130,7 +386060,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02122">
+            <rdf:Description rdf:about="#R_MAR02122">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.21"/>
@@ -386143,12 +386073,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02348x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02391x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02391x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01597x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02388x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02388x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:and>
@@ -386157,7 +386087,7 @@
           </fbc:and>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02123" sboTerm="SBO:0000176" id="MAR02123" name="Palmitoyl Coenzyme A:L-Carnitine O-Palmitoyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02123" sboTerm="SBO:0000176" id="R_MAR02123" name="Palmitoyl Coenzyme A:L-Carnitine O-Palmitoyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -386166,7 +386096,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02123">
+            <rdf:Description rdf:about="#R_MAR02123">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.21"/>
@@ -386179,12 +386109,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01364x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01364x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01597x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01363x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01363x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:and>
@@ -386193,7 +386123,7 @@
           </fbc:and>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02126" sboTerm="SBO:0000176" id="MAR02126" name="Steroyl Coenzyme A, Hydrogen-Donor:Oxygen Oxidoreductase Polyunsaturated Fatty Acid Biosynthesis" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02126" sboTerm="SBO:0000176" id="R_MAR02126" name="Steroyl Coenzyme A, Hydrogen-Donor:Oxygen Oxidoreductase Polyunsaturated Fatty Acid Biosynthesis" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -386202,7 +386132,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02126">
+            <rdf:Description rdf:about="#R_MAR02126">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.19.1"/>
@@ -386214,15 +386144,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01825c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02678c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01825c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02678c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01823c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02677c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01823c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02677c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -386231,7 +386161,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02128" sboTerm="SBO:0000176" id="MAR02128" name="Steroyl Coenzyme A, Hydrogen-Donor:Oxygen Oxidoreductase Polyunsaturated Fatty Acid Biosynthesis" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02128" sboTerm="SBO:0000176" id="R_MAR02128" name="Steroyl Coenzyme A, Hydrogen-Donor:Oxygen Oxidoreductase Polyunsaturated Fatty Acid Biosynthesis" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -386240,7 +386170,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02128">
+            <rdf:Description rdf:about="#R_MAR02128">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.19.1"/>
@@ -386252,15 +386182,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01825c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02941c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01825c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02941c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01823c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02647c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01823c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02647c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -386269,7 +386199,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02146" sboTerm="SBO:0000176" id="MAR02146" name="(S)-Methylmalonyl Coenzyme A Hydrolase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02146" sboTerm="SBO:0000176" id="R_MAR02146" name="(S)-Methylmalonyl Coenzyme A Hydrolase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -386278,7 +386208,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02146">
+            <rdf:Description rdf:about="#R_MAR02146">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.2.17"/>
@@ -386291,16 +386221,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02480m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02480m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02479m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02479m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR02148" sboTerm="SBO:0000176" id="MAR02148" name="Trans-Oct-2-Enoyl Coenzyme A Reductase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02148" sboTerm="SBO:0000176" id="R_MAR02148" name="Trans-Oct-2-Enoyl Coenzyme A Reductase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -386309,7 +386239,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02148">
+            <rdf:Description rdf:about="#R_MAR02148">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.1.38"/>
@@ -386323,19 +386253,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02554m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02644m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02644m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00059m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00059m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG16935"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02149" sboTerm="SBO:0000176" id="MAR02149" name="Trans-Dodec-2-Enoyl Coenzyme A Reductase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02149" sboTerm="SBO:0000176" id="R_MAR02149" name="Trans-Dodec-2-Enoyl Coenzyme A Reductase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -386344,7 +386274,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02149">
+            <rdf:Description rdf:about="#R_MAR02149">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.1.38"/>
@@ -386357,19 +386287,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02345m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02345m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00042m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00042m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG16935"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02183" sboTerm="SBO:0000176" id="MAR02183" name="Trans-Tetradec-2-Enoyl Coenzyme A Reductase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02183" sboTerm="SBO:0000176" id="R_MAR02183" name="Trans-Tetradec-2-Enoyl Coenzyme A Reductase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -386378,7 +386308,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02183">
+            <rdf:Description rdf:about="#R_MAR02183">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.1.38"/>
@@ -386391,19 +386321,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02495m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02495m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00066m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00066m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG16935"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02184" sboTerm="SBO:0000176" id="MAR02184" name="Cholest-5-Ene-3Beta, 7Alpha-Diol:NAD+ 3-Oxidoreductase Bile Acid Biosynthesis" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02184" sboTerm="SBO:0000176" id="R_MAR02184" name="Cholest-5-Ene-3Beta, 7Alpha-Diol:NAD+ 3-Oxidoreductase Bile Acid Biosynthesis" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -386412,7 +386342,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02184">
+            <rdf:Description rdf:about="#R_MAR02184">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.181"/>
@@ -386425,19 +386355,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00619r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00619r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01182r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01182r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG7724"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02185" sboTerm="SBO:0000176" id="MAR02185" name=" (3R)-3-Hydroxytetradecanoyl-[Acyl-Carrier-Protein]:NADP+ Oxidoreductase Fatty Acid Biosynthesis" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02185" sboTerm="SBO:0000176" id="R_MAR02185" name=" (3R)-3-Hydroxytetradecanoyl-[Acyl-Carrier-Protein]:NADP+ Oxidoreductase Fatty Acid Biosynthesis" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -386446,7 +386376,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02185">
+            <rdf:Description rdf:about="#R_MAR02185">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.85"/>
@@ -386457,19 +386387,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02130c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02130c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00905c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00905c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="FASN1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02186" sboTerm="SBO:0000176" id="MAR02186" name="2-Amino-4-Hydroxy-6- (Erythro-1, 2, 3-Trihydroxypropyl) Dihydropteridine Triphosphate Phosphohydrolase (Alkaline Optimum)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02186" sboTerm="SBO:0000176" id="R_MAR02186" name="2-Amino-4-Hydroxy-6- (Erythro-1, 2, 3-Trihydroxypropyl) Dihydropteridine Triphosphate Phosphohydrolase (Alkaline Optimum)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -386478,7 +386408,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02186">
+            <rdf:Description rdf:about="#R_MAR02186">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.3.1"/>
@@ -386491,13 +386421,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040e" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM01155e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040e" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM01155e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01704e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039e" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02751e" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM01704e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02751e" stoichiometry="3" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -386506,7 +386436,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02187" sboTerm="SBO:0000176" id="MAR02187" name="Trans-Dec-2-Enoyl Coenzyme A Reductase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02187" sboTerm="SBO:0000176" id="R_MAR02187" name="Trans-Dec-2-Enoyl Coenzyme A Reductase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -386515,7 +386445,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02187">
+            <rdf:Description rdf:about="#R_MAR02187">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.1.38"/>
@@ -386530,19 +386460,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01650m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01650m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG16935"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02188" sboTerm="SBO:0000176" id="MAR02188" name="3, 4-Dihydroxymandelaldehyde:NAD+ Oxidoreductase Tyrosine Metabolism" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02188" sboTerm="SBO:0000176" id="R_MAR02188" name="3, 4-Dihydroxymandelaldehyde:NAD+ Oxidoreductase Tyrosine Metabolism" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -386551,7 +386481,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02188">
+            <rdf:Description rdf:about="#R_MAR02188">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.2.1.5"/>
@@ -386564,14 +386494,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00726m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00726m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039m" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00727m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00727m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -386579,7 +386509,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02189" sboTerm="SBO:0000176" id="MAR02189" name="3, 4-Dihydroxymandelaldehyde:NADP+ Oxidoreductase Tyrosine Metabolism" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02189" sboTerm="SBO:0000176" id="R_MAR02189" name="3, 4-Dihydroxymandelaldehyde:NADP+ Oxidoreductase Tyrosine Metabolism" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -386588,7 +386518,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02189">
+            <rdf:Description rdf:about="#R_MAR02189">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.2.1.5"/>
@@ -386601,14 +386531,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00726m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00726m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039m" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02555m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00727m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02555m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00727m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -386616,7 +386546,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02192" sboTerm="SBO:0000176" id="MAR02192" name="3-Methoxy-4-Hydroxyphenylacetaldehyde:NAD+ Oxidoreductase Tyrosine Metabolism" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02192" sboTerm="SBO:0000176" id="R_MAR02192" name="3-Methoxy-4-Hydroxyphenylacetaldehyde:NAD+ Oxidoreductase Tyrosine Metabolism" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -386625,7 +386555,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02192">
+            <rdf:Description rdf:about="#R_MAR02192">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.2.1.5"/>
@@ -386638,14 +386568,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00818m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00818m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039m" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02137m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02137m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -386653,7 +386583,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02195" sboTerm="SBO:0000176" id="MAR02195" name="3-Methoxy-4-Hydroxyphenylacetaldehyde:NADP+ Oxidoreductase Tyrosine Metabolism" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02195" sboTerm="SBO:0000176" id="R_MAR02195" name="3-Methoxy-4-Hydroxyphenylacetaldehyde:NADP+ Oxidoreductase Tyrosine Metabolism" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -386662,7 +386592,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02195">
+            <rdf:Description rdf:about="#R_MAR02195">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.2.1.5"/>
@@ -386675,14 +386605,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00818m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00818m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039m" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02555m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02137m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02555m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02137m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -386690,7 +386620,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02196" sboTerm="SBO:0000176" id="MAR02196" name="3-Methoxy-4-Hydroxyphenylglycolaldehyde:NAD+ Oxidoreductase Tyrosine Metabolism" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02196" sboTerm="SBO:0000176" id="R_MAR02196" name="3-Methoxy-4-Hydroxyphenylglycolaldehyde:NAD+ Oxidoreductase Tyrosine Metabolism" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -386699,7 +386629,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02196">
+            <rdf:Description rdf:about="#R_MAR02196">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.2.1.5"/>
@@ -386712,14 +386642,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00820m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00820m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039m" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03136m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03136m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -386727,7 +386657,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02197" sboTerm="SBO:0000176" id="MAR02197" name="3-Methoxy-4-Hydroxyphenylglycolaldehyde:NADP+ Oxidoreductase Tyrosine Metabolism" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02197" sboTerm="SBO:0000176" id="R_MAR02197" name="3-Methoxy-4-Hydroxyphenylglycolaldehyde:NADP+ Oxidoreductase Tyrosine Metabolism" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -386736,7 +386666,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02197">
+            <rdf:Description rdf:about="#R_MAR02197">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.2.1.5"/>
@@ -386749,14 +386679,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00820m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00820m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039m" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02555m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03136m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02555m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03136m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -386764,7 +386694,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02198" sboTerm="SBO:0000176" id="MAR02198" name="Uroporphyrinogen I Carboxy-Lyase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02198" sboTerm="SBO:0000176" id="R_MAR02198" name="Uroporphyrinogen I Carboxy-Lyase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -386773,7 +386703,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02198">
+            <rdf:Description rdf:about="#R_MAR02198">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.1.1.37"/>
@@ -386788,50 +386718,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="4" constant="true"/>
-          <speciesReference species="MAM03127e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM03127e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01596e" stoichiometry="4" constant="true"/>
-          <speciesReference species="MAM01605e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01596e" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM01605e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Urod"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02199" sboTerm="SBO:0000176" id="MAR02199" name="4, 4-Dimethyl-5A-Cholesta-8, 24-Dien-3B-Ol:NADP+ D14-Oxidoreductase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
-        <notes>
-          <body xmlns="http://www.w3.org/1999/xhtml">
-            <p>Confidence Level: 0</p>
-            <p>AUTHORS: PMID:11969204;PMID:7946524</p>
-          </body>
-        </notes>
-        <annotation>
-          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02199">
-              <bqbiol:is>
-                <rdf:Bag>
-                  <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.1.70"/>
-                  <rdf:li rdf:resource="https://identifiers.org/vmhreaction/r0780"/>
-                </rdf:Bag>
-              </bqbiol:is>
-            </rdf:Description>
-          </rdf:RDF>
-        </annotation>
-        <listOfReactants>
-          <speciesReference species="MAM02554r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00367r" stoichiometry="1" constant="true"/>
-        </listOfReactants>
-        <listOfProducts>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00941r" stoichiometry="1" constant="true"/>
-        </listOfProducts>
-        <fbc:geneProductAssociation>
-          <fbc:geneProductRef fbc:geneProduct="LBR"/>
-        </fbc:geneProductAssociation>
-      </reaction>
-      <reaction metaid="MAR02207" sboTerm="SBO:0000176" id="MAR02207" name="Trans-Hex-2-Enoyl Coenzyme A Reductase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02207" sboTerm="SBO:0000176" id="R_MAR02207" name="Trans-Hex-2-Enoyl Coenzyme A Reductase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -386840,7 +386738,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02207">
+            <rdf:Description rdf:about="#R_MAR02207">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.1.38"/>
@@ -386855,19 +386753,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00053m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00053m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02122m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02122m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG16935"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02216" sboTerm="SBO:0000185" id="MAR02216" name="Mitochondrial Carrier (Mc) Tcdb:2.A.29.7.2" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02216" sboTerm="SBO:0000185" id="R_MAR02216" name="Mitochondrial Carrier (Mc) Tcdb:2.A.29.7.2" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -386876,7 +386774,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02216">
+            <rdf:Description rdf:about="#R_MAR02216">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/MALICITtm"/>
@@ -386888,18 +386786,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02183m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02439c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02183m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02439c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02183c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02439m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02183c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02439m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="sea"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02220" sboTerm="SBO:0000185" id="MAR02220" name="Mitochondrial Carrier (Mc) Tcdb:2.A.29.7.2" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02220" sboTerm="SBO:0000185" id="R_MAR02220" name="Mitochondrial Carrier (Mc) Tcdb:2.A.29.7.2" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -386908,7 +386806,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02220">
+            <rdf:Description rdf:about="#R_MAR02220">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/r0915"/>
@@ -386922,18 +386820,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01587c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02943m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01587c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02943m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01587m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02943c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01587m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02943c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="sea"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02221" sboTerm="SBO:0000185" id="MAR02221" name="ATP-Binding Cassette (ABC) Tcdb:3.A.1.204.5" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02221" sboTerm="SBO:0000185" id="R_MAR02221" name="ATP-Binding Cassette (ABC) Tcdb:3.A.1.204.5" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -386942,7 +386840,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02221">
+            <rdf:Description rdf:about="#R_MAR02221">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/r0924"/>
@@ -386956,15 +386854,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01450r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01450e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:and>
@@ -386973,7 +386871,7 @@
           </fbc:and>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02222" sboTerm="SBO:0000185" id="MAR02222" name="Free Diffusion" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02222" sboTerm="SBO:0000185" id="R_MAR02222" name="Free Diffusion" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -386982,7 +386880,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02222">
+            <rdf:Description rdf:about="#R_MAR02222">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/r0927"/>
@@ -386993,13 +386891,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01256m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01256m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01256e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01256e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR02223" sboTerm="SBO:0000185" id="MAR02223" name="Transport Reaction" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02223" sboTerm="SBO:0000185" id="R_MAR02223" name="Transport Reaction" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -387008,7 +386906,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02223">
+            <rdf:Description rdf:about="#R_MAR02223">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/r0931"/>
@@ -387020,13 +386918,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01362l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01362l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01362r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01362r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR02224" sboTerm="SBO:0000185" id="MAR02224" name="Transport Reaction" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02224" sboTerm="SBO:0000185" id="R_MAR02224" name="Transport Reaction" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -387035,7 +386933,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02224">
+            <rdf:Description rdf:about="#R_MAR02224">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/r0936"/>
@@ -387046,13 +386944,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02674l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02674l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02674r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02674r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR02225" sboTerm="SBO:0000185" id="MAR02225" name="Free Diffusion" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02225" sboTerm="SBO:0000185" id="R_MAR02225" name="Free Diffusion" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -387061,7 +386959,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02225">
+            <rdf:Description rdf:about="#R_MAR02225">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/r0941"/>
@@ -387075,13 +386973,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02046m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR02226" sboTerm="SBO:0000185" id="MAR02226" name="Amino Acid-Polyamine-Organocation (Apc) Tcdb:2.A.3.8.15" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02226" sboTerm="SBO:0000185" id="R_MAR02226" name="Amino Acid-Polyamine-Organocation (Apc) Tcdb:2.A.3.8.15" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -387090,7 +386988,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02226">
+            <rdf:Description rdf:about="#R_MAR02226">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/r0946"/>
@@ -387102,18 +387000,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01588c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02658e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01588c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02658e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01588e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02658c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01588e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02658c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="sbm"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02271" sboTerm="SBO:0000185" id="MAR02271" name="Mitochondrial Carrier (Mc) Tcdb:2.A.29.19.1" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02271" sboTerm="SBO:0000185" id="R_MAR02271" name="Mitochondrial Carrier (Mc) Tcdb:2.A.29.19.1" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -387122,7 +387020,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02271">
+            <rdf:Description rdf:about="#R_MAR02271">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/r0947"/>
@@ -387134,18 +387032,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01588c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02658m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01588c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02658m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01588m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02658c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01588m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02658c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG1628"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02272" sboTerm="SBO:0000185" id="MAR02272" name="Solute Carrier Family 27 (Fatty Acid Transporter), Member 5 Tcdb:4.C.1.1.5 Tcdb:4.C.1.1.8" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02272" sboTerm="SBO:0000185" id="R_MAR02272" name="Solute Carrier Family 27 (Fatty Acid Transporter), Member 5 Tcdb:4.C.1.1.5 Tcdb:4.C.1.1.8" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -387154,7 +387052,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02272">
+            <rdf:Description rdf:about="#R_MAR02272">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/r0983"/>
@@ -387166,16 +387064,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02939l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02939l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02939r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02939r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Fatp1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02273" sboTerm="SBO:0000185" id="MAR02273" name="Vesicular Transport" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02273" sboTerm="SBO:0000185" id="R_MAR02273" name="Vesicular Transport" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -387184,7 +387082,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02273">
+            <rdf:Description rdf:about="#R_MAR02273">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/r0986"/>
@@ -387196,13 +387094,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02387l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02387l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02387r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02387r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR02274" sboTerm="SBO:0000185" id="MAR02274" name="Postulated Transport Reaction" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02274" sboTerm="SBO:0000185" id="R_MAR02274" name="Postulated Transport Reaction" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -387211,7 +387109,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02274">
+            <rdf:Description rdf:about="#R_MAR02274">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/r0988"/>
@@ -387223,13 +387121,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02336r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02336r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02336x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02336x" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR02275" sboTerm="SBO:0000185" id="MAR02275" name="Postulated Transport Reaction" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02275" sboTerm="SBO:0000185" id="R_MAR02275" name="Postulated Transport Reaction" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -387238,7 +387136,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02275">
+            <rdf:Description rdf:about="#R_MAR02275">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/r0989"/>
@@ -387250,13 +387148,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01514r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01514r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01514c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01514c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR02276" sboTerm="SBO:0000185" id="MAR02276" name="ATP-Binding Cassette (ABC) Tcdb:3.A.1.208.2" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02276" sboTerm="SBO:0000185" id="R_MAR02276" name="ATP-Binding Cassette (ABC) Tcdb:3.A.1.208.2" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -387265,7 +387163,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02276">
+            <rdf:Description rdf:about="#R_MAR02276">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/r0993"/>
@@ -387277,21 +387175,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03318c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03318c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03318e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03318e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="MRP"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02277" sboTerm="SBO:0000185" id="MAR02277" name="Facilitated Diffusion" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02277" sboTerm="SBO:0000185" id="R_MAR02277" name="Facilitated Diffusion" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -387300,7 +387198,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02277">
+            <rdf:Description rdf:about="#R_MAR02277">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/r0994"/>
@@ -387312,13 +387210,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03318c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03318c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03318r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03318r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR02278" sboTerm="SBO:0000185" id="MAR02278" name="Facilitated Diffusion" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02278" sboTerm="SBO:0000185" id="R_MAR02278" name="Facilitated Diffusion" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -387327,7 +387225,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02278">
+            <rdf:Description rdf:about="#R_MAR02278">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/r0999"/>
@@ -387339,15 +387237,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02411x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02411x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02348x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02411c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02411c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR02279" sboTerm="SBO:0000185" id="MAR02279" name="Facilitated Diffusion" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02279" sboTerm="SBO:0000185" id="R_MAR02279" name="Facilitated Diffusion" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -387356,7 +387254,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02279">
+            <rdf:Description rdf:about="#R_MAR02279">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/r1003"/>
@@ -387368,15 +387266,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02388x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02388x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02348x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02388c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02388c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR02280" sboTerm="SBO:0000185" id="MAR02280" name="Facilitated Diffusion" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02280" sboTerm="SBO:0000185" id="R_MAR02280" name="Facilitated Diffusion" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -387385,7 +387283,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02280">
+            <rdf:Description rdf:about="#R_MAR02280">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/r1008"/>
@@ -387397,15 +387295,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01363x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01363x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01363c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01363c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348x" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR02283" sboTerm="SBO:0000185" id="MAR02283" name="Postulated Transport Reaction" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02283" sboTerm="SBO:0000185" id="R_MAR02283" name="Postulated Transport Reaction" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -387414,7 +387312,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02283">
+            <rdf:Description rdf:about="#R_MAR02283">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/r1012"/>
@@ -387426,18 +387324,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00614r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00614r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00614x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01285r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00614x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR02285" sboTerm="SBO:0000185" id="MAR02285" name="Postulated Transport Reaction" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02285" sboTerm="SBO:0000185" id="R_MAR02285" name="Postulated Transport Reaction" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -387446,7 +387344,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02285">
+            <rdf:Description rdf:about="#R_MAR02285">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/r1014"/>
@@ -387458,18 +387356,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00616r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00616r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00616x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01285r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00616x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR02290" sboTerm="SBO:0000185" id="MAR02290" name="Vesicular Transport" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02290" sboTerm="SBO:0000185" id="R_MAR02290" name="Vesicular Transport" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -387478,7 +387376,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02290">
+            <rdf:Description rdf:about="#R_MAR02290">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/r1017"/>
@@ -387492,18 +387390,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02963x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02963x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02963e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02963e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR02291" sboTerm="SBO:0000185" id="MAR02291" name="Postulated Transport Reaction" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02291" sboTerm="SBO:0000185" id="R_MAR02291" name="Postulated Transport Reaction" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -387512,7 +387410,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02291">
+            <rdf:Description rdf:about="#R_MAR02291">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/r1021"/>
@@ -387522,13 +387420,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00755m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00755m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00755c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00755c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR02297" sboTerm="SBO:0000185" id="MAR02297" name="Active Transport" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02297" sboTerm="SBO:0000185" id="R_MAR02297" name="Active Transport" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -387537,7 +387435,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02297">
+            <rdf:Description rdf:about="#R_MAR02297">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/r1024"/>
@@ -387549,18 +387447,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01182r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01182r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01182c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01285r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01182c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR02298" sboTerm="SBO:0000185" id="MAR02298" name="Vesicular Transport" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02298" sboTerm="SBO:0000185" id="R_MAR02298" name="Vesicular Transport" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -387569,7 +387467,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02298">
+            <rdf:Description rdf:about="#R_MAR02298">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/r1029"/>
@@ -387583,18 +387481,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02962x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02962x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02962e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02962e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR02299" sboTerm="SBO:0000185" id="MAR02299" name="Vesicular Transport" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02299" sboTerm="SBO:0000185" id="R_MAR02299" name="Vesicular Transport" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -387603,7 +387501,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02299">
+            <rdf:Description rdf:about="#R_MAR02299">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/r1078"/>
@@ -387615,13 +387513,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03101c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03101c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03101m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03101m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR02300" sboTerm="SBO:0000176" id="MAR02300" name="Methylsterol Monooxygenase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02300" sboTerm="SBO:0000176" id="R_MAR02300" name="Methylsterol Monooxygenase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -387630,7 +387528,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02300">
+            <rdf:Description rdf:about="#R_MAR02300">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.13.72"/>
@@ -387642,18 +387540,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630r" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM00367r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630r" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM00367r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040r" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02554r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00953r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02554r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00953r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR02302" sboTerm="SBO:0000176" id="MAR02302" name="Biosynthesis of Steroids Enzyme Catalyzed" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02302" sboTerm="SBO:0000176" id="R_MAR02302" name="Biosynthesis of Steroids Enzyme Catalyzed" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -387662,7 +387560,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02302">
+            <rdf:Description rdf:about="#R_MAR02302">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/r1146"/>
@@ -387673,16 +387571,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040r" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM00968r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM00968r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01596r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039r" stoichiometry="6" constant="true"/>
-          <speciesReference species="MAM03158r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01596r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="6" constant="true"/>
+          <speciesReference species="M_MAM03158r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR02303" sboTerm="SBO:0000185" id="MAR02303" name="Mitochondrial Carrier (Mc) Tcdb:2.A.29.7.2" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02303" sboTerm="SBO:0000185" id="R_MAR02303" name="Mitochondrial Carrier (Mc) Tcdb:2.A.29.7.2" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -387691,7 +387589,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02303">
+            <rdf:Description rdf:about="#R_MAR02303">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/AKGICITtm"/>
@@ -387703,18 +387601,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01306c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02183m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01306c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02183m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01306m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02183c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01306m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02183c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="sea"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02304" sboTerm="SBO:0000185" id="MAR02304" name="Active Transport" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02304" sboTerm="SBO:0000185" id="R_MAR02304" name="Active Transport" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -387723,7 +387621,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02304">
+            <rdf:Description rdf:about="#R_MAR02304">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.1.3.6"/>
@@ -387738,18 +387636,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02946c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02946c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02946e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02946e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR02306" sboTerm="SBO:0000176" id="MAR02306" name="Sterol O-Acyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02306" sboTerm="SBO:0000176" id="R_MAR02306" name="Sterol O-Acyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -387758,7 +387656,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02306">
+            <rdf:Description rdf:about="#R_MAR02306">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.26"/>
@@ -387771,18 +387669,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01450r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00051r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00051r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01505r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01505r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG8112"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02308" sboTerm="SBO:0000176" id="MAR02308" name="Glycerol-3-Phosphate 1-O-Acyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02308" sboTerm="SBO:0000176" id="R_MAR02308" name="Glycerol-3-Phosphate 1-O-Acyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -387791,7 +387689,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02308">
+            <rdf:Description rdf:about="#R_MAR02308">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.15"/>
@@ -387802,18 +387700,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02914c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00051c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02914c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00051c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00497c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00497c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Gpat4"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02310" sboTerm="SBO:0000176" id="MAR02310" name="Long-Chain-Fatty-Acid---Coa Ligase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02310" sboTerm="SBO:0000176" id="R_MAR02310" name="Long-Chain-Fatty-Acid---Coa Ligase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -387822,7 +387720,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02310">
+            <rdf:Description rdf:about="#R_MAR02310">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.3"/>
@@ -387835,14 +387733,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02675r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02675r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01334r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00051r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00051r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -387853,7 +387751,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02312" sboTerm="SBO:0000176" id="MAR02312" name="Long-Chain-Fatty-Acid---Coa Ligase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02312" sboTerm="SBO:0000176" id="R_MAR02312" name="Long-Chain-Fatty-Acid---Coa Ligase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -387862,7 +387760,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02312">
+            <rdf:Description rdf:about="#R_MAR02312">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.3"/>
@@ -387875,14 +387773,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02675c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02675c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01334c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00051c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00051c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -387893,7 +387791,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02313" sboTerm="SBO:0000176" id="MAR02313" name="Long-Chain-Fatty-Acid---Coa Ligase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02313" sboTerm="SBO:0000176" id="R_MAR02313" name="Long-Chain-Fatty-Acid---Coa Ligase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -387902,7 +387800,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02313">
+            <rdf:Description rdf:about="#R_MAR02313">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.3"/>
@@ -387914,15 +387812,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039r" stoichiometry="8" constant="true"/>
-          <speciesReference species="MAM02939r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="8" constant="true"/>
+          <speciesReference species="M_MAM02939r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01334r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02941r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02941r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -387933,7 +387831,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02314" sboTerm="SBO:0000176" id="MAR02314" name="Long-Chain-Fatty-Acid---Coa Ligase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02314" sboTerm="SBO:0000176" id="R_MAR02314" name="Long-Chain-Fatty-Acid---Coa Ligase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -387942,7 +387840,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02314">
+            <rdf:Description rdf:about="#R_MAR02314">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.3"/>
@@ -387955,14 +387853,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02389r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02389r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01334r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01934r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01934r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -387973,7 +387871,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02316" sboTerm="SBO:0000185" id="MAR02316" name="Vesicular Transport" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02316" sboTerm="SBO:0000185" id="R_MAR02316" name="Vesicular Transport" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -387982,7 +387880,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02316">
+            <rdf:Description rdf:about="#R_MAR02316">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.13"/>
@@ -387995,13 +387893,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01932l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01932l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01932r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01932r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR02318" sboTerm="SBO:0000185" id="MAR02318" name="Vesicular Transport" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02318" sboTerm="SBO:0000185" id="R_MAR02318" name="Vesicular Transport" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -388010,7 +387908,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02318">
+            <rdf:Description rdf:about="#R_MAR02318">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.13"/>
@@ -388023,13 +387921,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02646l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02646l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02646r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02646r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR02320" sboTerm="SBO:0000185" id="MAR02320" name="Vesicular Transport" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02320" sboTerm="SBO:0000185" id="R_MAR02320" name="Vesicular Transport" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -388038,7 +387936,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02320">
+            <rdf:Description rdf:about="#R_MAR02320">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.13"/>
@@ -388051,13 +387949,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02675l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02675l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02675r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02675r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR02322" sboTerm="SBO:0000176" id="MAR02322" name="3-Oxoacyl-Acp Synthase, Mitochondrial Polyunsaturated Fatty Acid Biosynthesis" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02322" sboTerm="SBO:0000176" id="R_MAR02322" name="3-Oxoacyl-Acp Synthase, Mitochondrial Polyunsaturated Fatty Acid Biosynthesis" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -388066,7 +387964,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02322">
+            <rdf:Description rdf:about="#R_MAR02322">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.85"/>
@@ -388077,20 +387975,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02115c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02442c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02115c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02442c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00184c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01596c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03390c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00184c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01596c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03390c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG12170"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02323" sboTerm="SBO:0000176" id="MAR02323" name="Fatty Acid Synthase Polyunsaturated Fatty Acid Biosynthesis" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02323" sboTerm="SBO:0000176" id="R_MAR02323" name="Fatty Acid Synthase Polyunsaturated Fatty Acid Biosynthesis" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -388099,7 +387997,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02323">
+            <rdf:Description rdf:about="#R_MAR02323">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.85"/>
@@ -388110,19 +388008,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03390c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03390c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03391c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03391c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="FASN1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02325" sboTerm="SBO:0000176" id="MAR02325" name="Fatty Acid Synthase Polyunsaturated Fatty Acid Biosynthesis" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02325" sboTerm="SBO:0000176" id="R_MAR02325" name="Fatty Acid Synthase Polyunsaturated Fatty Acid Biosynthesis" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -388131,7 +388029,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02325">
+            <rdf:Description rdf:about="#R_MAR02325">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.85"/>
@@ -388142,17 +388040,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03391c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03391c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03392c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03392c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="FASN1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02327" sboTerm="SBO:0000176" id="MAR02327" name="Fatty Acid Synthase Polyunsaturated Fatty Acid Biosynthesis" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02327" sboTerm="SBO:0000176" id="R_MAR02327" name="Fatty Acid Synthase Polyunsaturated Fatty Acid Biosynthesis" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -388161,7 +388059,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02327">
+            <rdf:Description rdf:about="#R_MAR02327">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.85"/>
@@ -388172,19 +388070,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03392c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03392c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03389c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03389c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="FASN1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02331" sboTerm="SBO:0000185" id="MAR02331" name="Transport Reaction" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02331" sboTerm="SBO:0000185" id="R_MAR02331" name="Transport Reaction" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -388193,7 +388091,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02331">
+            <rdf:Description rdf:about="#R_MAR02331">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.15"/>
@@ -388206,13 +388104,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02391c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02391c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02391r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02391r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR02333" sboTerm="SBO:0000185" id="MAR02333" name="Vesicular Transport" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02333" sboTerm="SBO:0000185" id="R_MAR02333" name="Vesicular Transport" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -388221,7 +388119,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02333">
+            <rdf:Description rdf:about="#R_MAR02333">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/r1364"/>
@@ -388233,13 +388131,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02389l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02389l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02389r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02389r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR02335" sboTerm="SBO:0000185" id="MAR02335" name="Vesicular Transport" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02335" sboTerm="SBO:0000185" id="R_MAR02335" name="Vesicular Transport" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -388248,7 +388146,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02335">
+            <rdf:Description rdf:about="#R_MAR02335">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/r1367"/>
@@ -388260,13 +388158,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01696l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01696l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01696r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01696r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR02340" sboTerm="SBO:0000185" id="MAR02340" name="Active Transport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02340" sboTerm="SBO:0000185" id="R_MAR02340" name="Active Transport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -388275,7 +388173,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02340">
+            <rdf:Description rdf:about="#R_MAR02340">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/r1400"/>
@@ -388287,15 +388185,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02348m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02774c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02774c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02774m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02774m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR02341" sboTerm="SBO:0000176" id="MAR02341" name="D-Galactosyl-N-Acetyl-D-Galactosaminyl- (N-Acetylneuraminyl)-D- Galactosyl-D-Glucosylceramide Galactohydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02341" sboTerm="SBO:0000176" id="R_MAR02341" name="D-Galactosyl-N-Acetyl-D-Galactosaminyl- (N-Acetylneuraminyl)-D- Galactosyl-D-Glucosylceramide Galactohydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -388304,7 +388202,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02341">
+            <rdf:Description rdf:about="#R_MAR02341">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.2.1.23"/>
@@ -388317,18 +388215,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02008e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02008e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01910e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02011e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01910e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02011e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Ect3"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02346" sboTerm="SBO:0000185" id="MAR02346" name="Free Diffusion" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02346" sboTerm="SBO:0000185" id="R_MAR02346" name="Free Diffusion" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -388337,7 +388235,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02346">
+            <rdf:Description rdf:about="#R_MAR02346">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.1"/>
@@ -388350,13 +388248,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01831e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01831e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01831c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01831c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR02351" sboTerm="SBO:0000185" id="MAR02351" name="Facilitated Diffusion" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02351" sboTerm="SBO:0000185" id="R_MAR02351" name="Facilitated Diffusion" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -388365,7 +388263,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02351">
+            <rdf:Description rdf:about="#R_MAR02351">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.1"/>
@@ -388380,13 +388278,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02751e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR02352" sboTerm="SBO:0000176" id="MAR02352" name="2-Deoxyuridine 5-Diphosphate:Oxidized-Thioredoxin 2-Oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02352" sboTerm="SBO:0000176" id="R_MAR02352" name="2-Deoxyuridine 5-Diphosphate:Oxidized-Thioredoxin 2-Oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -388395,7 +388293,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02352">
+            <rdf:Description rdf:about="#R_MAR02352">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.17.4.1"/>
@@ -388406,13 +388304,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01637m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02666m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01637m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02666m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02990m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02990m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -388424,7 +388322,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02357" sboTerm="SBO:0000176" id="MAR02357" name="2-Deoxyuridine 5-Diphosphate:Oxidized-Thioredoxin 2-Oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02357" sboTerm="SBO:0000176" id="R_MAR02357" name="2-Deoxyuridine 5-Diphosphate:Oxidized-Thioredoxin 2-Oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -388433,7 +388331,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02357">
+            <rdf:Description rdf:about="#R_MAR02357">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.17.4.1"/>
@@ -388444,13 +388342,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01680m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02666m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01680m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02666m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01948m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02990m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01948m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02990m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -388462,7 +388360,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02358" sboTerm="SBO:0000176" id="MAR02358" name="NADPH:Oxidized-Thioredoxin Oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02358" sboTerm="SBO:0000176" id="R_MAR02358" name="NADPH:Oxidized-Thioredoxin Oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -388471,7 +388369,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02358">
+            <rdf:Description rdf:about="#R_MAR02358">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.8.1.9"/>
@@ -388482,16 +388380,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02554m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02990m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02990m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02666m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02666m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR02360" sboTerm="SBO:0000185" id="MAR02360" name="Active Transport" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02360" sboTerm="SBO:0000185" id="R_MAR02360" name="Active Transport" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -388500,7 +388398,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02360">
+            <rdf:Description rdf:about="#R_MAR02360">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.4.19.9"/>
@@ -388513,13 +388411,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02990c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02990c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02990m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02990m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR02366" sboTerm="SBO:0000176" id="MAR02366" name="Acyl-CoA Oxidase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02366" sboTerm="SBO:0000176" id="R_MAR02366" name="Acyl-CoA Oxidase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -388528,7 +388426,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02366">
+            <rdf:Description rdf:about="#R_MAR02366">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.3.6"/>
@@ -388540,12 +388438,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01412m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03103m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01412m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03103m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01622m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03102m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01622m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03102m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -388554,7 +388452,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02367" sboTerm="SBO:0000176" id="MAR02367" name="Acyl-CoA Oxidase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02367" sboTerm="SBO:0000176" id="R_MAR02367" name="Acyl-CoA Oxidase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -388563,7 +388461,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02367">
+            <rdf:Description rdf:about="#R_MAR02367">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.3.6"/>
@@ -388575,12 +388473,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02345m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03103m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02345m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03103m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00042m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03102m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00042m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03102m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -388589,7 +388487,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02369" sboTerm="SBO:0000176" id="MAR02369" name="Acyl-CoA Oxidase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02369" sboTerm="SBO:0000176" id="R_MAR02369" name="Acyl-CoA Oxidase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -388598,7 +388496,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02369">
+            <rdf:Description rdf:about="#R_MAR02369">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.3.6"/>
@@ -388610,12 +388508,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02644m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03103m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02644m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03103m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00059m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03102m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00059m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03102m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -388624,7 +388522,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02370" sboTerm="SBO:0000176" id="MAR02370" name="Acyl-CoA Oxidase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02370" sboTerm="SBO:0000176" id="R_MAR02370" name="Acyl-CoA Oxidase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -388633,7 +388531,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02370">
+            <rdf:Description rdf:about="#R_MAR02370">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.3.6"/>
@@ -388645,12 +388543,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02495m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03103m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02495m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03103m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00066m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03102m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00066m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03102m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -388659,7 +388557,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02372" sboTerm="SBO:0000176" id="MAR02372" name="Acyl-CoA Oxidase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02372" sboTerm="SBO:0000176" id="R_MAR02372" name="Acyl-CoA Oxidase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -388668,7 +388566,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02372">
+            <rdf:Description rdf:about="#R_MAR02372">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.3.6"/>
@@ -388680,12 +388578,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02122m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03103m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02122m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03103m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00053m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03102m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00053m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03102m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -388694,7 +388592,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02373" sboTerm="SBO:0000176" id="MAR02373" name="Acyl-CoA Oxidase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02373" sboTerm="SBO:0000176" id="R_MAR02373" name="Acyl-CoA Oxidase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -388703,7 +388601,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02373">
+            <rdf:Description rdf:about="#R_MAR02373">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.3.6"/>
@@ -388715,12 +388613,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01650m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03103m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01650m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03103m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03102m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03102m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -388729,7 +388627,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02375" sboTerm="SBO:0000176" id="MAR02375" name="Long-Chain-Acyl Coenzyme A Dehydrogenase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02375" sboTerm="SBO:0000176" id="R_MAR02375" name="Long-Chain-Acyl Coenzyme A Dehydrogenase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -388737,7 +388635,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02375">
+            <rdf:Description rdf:about="#R_MAR02375">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.86"/>
@@ -388750,21 +388648,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01934r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039r" stoichiometry="4" constant="true"/>
-          <speciesReference species="MAM02444r" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02555r" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02630r" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01934r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM02444r" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02555r" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02630r" stoichiometry="2" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01596r" stoichiometry="4" constant="true"/>
-          <speciesReference species="MAM01597r" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM01697r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040r" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02554r" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01596r" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01697r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02554r" stoichiometry="2" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR02377" sboTerm="SBO:0000185" id="MAR02377" name="Postulated Transport Reaction" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02377" sboTerm="SBO:0000185" id="R_MAR02377" name="Postulated Transport Reaction" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -388772,7 +388670,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02377">
+            <rdf:Description rdf:about="#R_MAR02377">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.86"/>
@@ -388785,13 +388683,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02647c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02647c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02647m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02647m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR02379" sboTerm="SBO:0000185" id="MAR02379" name="Postulated Transport Reaction" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02379" sboTerm="SBO:0000185" id="R_MAR02379" name="Postulated Transport Reaction" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -388799,7 +388697,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02379">
+            <rdf:Description rdf:about="#R_MAR02379">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.86"/>
@@ -388812,13 +388710,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02677c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02677c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02677m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02677m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR02381" sboTerm="SBO:0000176" id="MAR02381" name="Long-Chain-Acyl Coenzyme A Dehydrogenase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02381" sboTerm="SBO:0000176" id="R_MAR02381" name="Long-Chain-Acyl Coenzyme A Dehydrogenase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -388826,7 +388724,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02381">
+            <rdf:Description rdf:about="#R_MAR02381">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.86"/>
@@ -388838,15 +388736,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00893m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00893m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02677m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02677m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR02382" sboTerm="SBO:0000185" id="MAR02382" name="Utilized Transport" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02382" sboTerm="SBO:0000185" id="R_MAR02382" name="Utilized Transport" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -388855,7 +388753,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02382">
+            <rdf:Description rdf:about="#R_MAR02382">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.8.1.9"/>
@@ -388868,13 +388766,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02026c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02026e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR02384" sboTerm="SBO:0000185" id="MAR02384" name="Glycoside-Pentoside-Hexuronide (Gph):Cation Symporter Tcdb:2.A.28.1.1" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02384" sboTerm="SBO:0000185" id="R_MAR02384" name="Glycoside-Pentoside-Hexuronide (Gph):Cation Symporter Tcdb:2.A.28.1.1" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -388883,7 +388781,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02384">
+            <rdf:Description rdf:about="#R_MAR02384">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/r1495"/>
@@ -388895,18 +388793,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02519e" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03318e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03318e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02519c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03318c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03318c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG11655"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02390" sboTerm="SBO:0000185" id="MAR02390" name="Resistance-Nodulation-Cell Division (Rnd) Tcdb:2.A.60.1.14" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02390" sboTerm="SBO:0000185" id="R_MAR02390" name="Resistance-Nodulation-Cell Division (Rnd) Tcdb:2.A.60.1.14" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -388915,7 +388813,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02390">
+            <rdf:Description rdf:about="#R_MAR02390">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/r2157"/>
@@ -388927,14 +388825,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01980c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03318e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01980c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03318e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01980e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03318c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01980e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03318c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -388946,7 +388844,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02392" sboTerm="SBO:0000185" id="MAR02392" name="Resistance-Nodulation-Cell Division (Rnd) Tcdb:2.A.60.1.14" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02392" sboTerm="SBO:0000185" id="R_MAR02392" name="Resistance-Nodulation-Cell Division (Rnd) Tcdb:2.A.60.1.14" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -388955,7 +388853,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02392">
+            <rdf:Description rdf:about="#R_MAR02392">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/r2158"/>
@@ -388967,14 +388865,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02900c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03318e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02900c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03318e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02900e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03318c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02900e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03318c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -388986,7 +388884,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02394" sboTerm="SBO:0000185" id="MAR02394" name="Resistance-Nodulation-Cell Division (Rnd) Tcdb:2.A.60.1.14" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02394" sboTerm="SBO:0000185" id="R_MAR02394" name="Resistance-Nodulation-Cell Division (Rnd) Tcdb:2.A.60.1.14" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -388995,7 +388893,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02394">
+            <rdf:Description rdf:about="#R_MAR02394">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/r2159"/>
@@ -389007,14 +388905,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02901c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03318e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02901c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03318e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02901e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03318c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02901e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03318c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -389026,7 +388924,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02396" sboTerm="SBO:0000185" id="MAR02396" name="Resistance-Nodulation-Cell Division (Rnd) Tcdb:2.A.60.1.5" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02396" sboTerm="SBO:0000185" id="R_MAR02396" name="Resistance-Nodulation-Cell Division (Rnd) Tcdb:2.A.60.1.5" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -389035,7 +388933,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02396">
+            <rdf:Description rdf:about="#R_MAR02396">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/r2236"/>
@@ -389047,14 +388945,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01980c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00270e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01980c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00270e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00270c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01980e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00270c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01980e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -389066,7 +388964,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02398" sboTerm="SBO:0000185" id="MAR02398" name="Resistance-Nodulation-Cell Division (Rnd) Tcdb:2.A.60.1.5" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02398" sboTerm="SBO:0000185" id="R_MAR02398" name="Resistance-Nodulation-Cell Division (Rnd) Tcdb:2.A.60.1.5" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -389075,7 +388973,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02398">
+            <rdf:Description rdf:about="#R_MAR02398">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/r2237"/>
@@ -389087,14 +388985,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02900c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00270e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02900c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00270e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00270c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02900e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00270c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02900e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -389106,7 +389004,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02400" sboTerm="SBO:0000185" id="MAR02400" name="Resistance-Nodulation-Cell Division (Rnd) Tcdb:2.A.60.1.5" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02400" sboTerm="SBO:0000185" id="R_MAR02400" name="Resistance-Nodulation-Cell Division (Rnd) Tcdb:2.A.60.1.5" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -389115,7 +389013,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02400">
+            <rdf:Description rdf:about="#R_MAR02400">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/r2238"/>
@@ -389127,14 +389025,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02901c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00270e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02901c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00270e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00270c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02901e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00270c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02901e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -389146,7 +389044,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02402" sboTerm="SBO:0000185" id="MAR02402" name="Resistance-Nodulation-Cell Division (Rnd) Tcdb:2.A.60.1.2" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02402" sboTerm="SBO:0000185" id="R_MAR02402" name="Resistance-Nodulation-Cell Division (Rnd) Tcdb:2.A.60.1.2" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -389155,7 +389053,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02402">
+            <rdf:Description rdf:about="#R_MAR02402">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/r2315"/>
@@ -389167,14 +389065,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02026c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00270e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00270e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00270c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02026e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00270c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -389186,7 +389084,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02404" sboTerm="SBO:0000185" id="MAR02404" name="Organic Anion Transporter 5 Utilized Transport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02404" sboTerm="SBO:0000185" id="R_MAR02404" name="Organic Anion Transporter 5 Utilized Transport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -389195,7 +389093,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02404">
+            <rdf:Description rdf:about="#R_MAR02404">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/r2346"/>
@@ -389207,10 +389105,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00270e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00270e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00270c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00270c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -389230,7 +389128,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02405" sboTerm="SBO:0000185" id="MAR02405" name="Mitochondrial Carrier (Mc) Tcdb:2.A.29.7.2" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02405" sboTerm="SBO:0000185" id="R_MAR02405" name="Mitochondrial Carrier (Mc) Tcdb:2.A.29.7.2" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -389239,7 +389137,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02405">
+            <rdf:Description rdf:about="#R_MAR02405">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/AKGCITtm"/>
@@ -389251,18 +389149,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01306c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01587m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01306c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01587m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01306m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01587c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01306m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01587c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="sea"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02406" sboTerm="SBO:0000185" id="MAR02406" name="Mitochondrial Carrier (Mc) Tcdb:2.A.29.7.2" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02406" sboTerm="SBO:0000185" id="R_MAR02406" name="Mitochondrial Carrier (Mc) Tcdb:2.A.29.7.2" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -389271,7 +389169,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02406">
+            <rdf:Description rdf:about="#R_MAR02406">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/r2374"/>
@@ -389283,18 +389181,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01587m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02661c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01587m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02661c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01587c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02661m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01587c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02661m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="sea"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02413" sboTerm="SBO:0000185" id="MAR02413" name="Mitochondrial Carrier (Mc) Tcdb:2.A.29.7.2" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02413" sboTerm="SBO:0000185" id="R_MAR02413" name="Mitochondrial Carrier (Mc) Tcdb:2.A.29.7.2" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -389303,7 +389201,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02413">
+            <rdf:Description rdf:about="#R_MAR02413">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/r2375"/>
@@ -389315,18 +389213,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02183m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02943c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02183m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02943c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02183c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02943m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02183c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02943m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="sea"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02414" sboTerm="SBO:0000185" id="MAR02414" name="Mitochondrial Carrier (Mc) Tcdb:2.A.29.7.2" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02414" sboTerm="SBO:0000185" id="R_MAR02414" name="Mitochondrial Carrier (Mc) Tcdb:2.A.29.7.2" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -389335,7 +389233,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02414">
+            <rdf:Description rdf:about="#R_MAR02414">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/r2376"/>
@@ -389347,18 +389245,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02183m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02661c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02183m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02661c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02183c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02661m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02183c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02661m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="sea"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02416" sboTerm="SBO:0000185" id="MAR02416" name="Mitochondrial Carrier (Mc) Tcdb:2.A.29.7.2" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02416" sboTerm="SBO:0000185" id="R_MAR02416" name="Mitochondrial Carrier (Mc) Tcdb:2.A.29.7.2" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -389367,7 +389265,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02416">
+            <rdf:Description rdf:about="#R_MAR02416">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/r2377"/>
@@ -389379,18 +389277,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01306c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01580m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01306c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01580m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01306m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01580c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01306m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01580c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="sea"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02418" sboTerm="SBO:0000185" id="MAR02418" name="Mitochondrial Carrier (Mc) Tcdb:2.A.29.7.2" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02418" sboTerm="SBO:0000185" id="R_MAR02418" name="Mitochondrial Carrier (Mc) Tcdb:2.A.29.7.2" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -389399,7 +389297,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02418">
+            <rdf:Description rdf:about="#R_MAR02418">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/r2378"/>
@@ -389411,18 +389309,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01580m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02943c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01580m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02943c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01580c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02943m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01580c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02943m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="sea"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02420" sboTerm="SBO:0000185" id="MAR02420" name="Mitochondrial Carrier (Mc) Tcdb:2.A.29.7.2" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02420" sboTerm="SBO:0000185" id="R_MAR02420" name="Mitochondrial Carrier (Mc) Tcdb:2.A.29.7.2" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -389431,7 +389329,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02420">
+            <rdf:Description rdf:about="#R_MAR02420">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/r2379"/>
@@ -389443,18 +389341,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01580m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02439c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01580m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02439c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01580c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02439m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01580c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02439m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="sea"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02422" sboTerm="SBO:0000185" id="MAR02422" name="Mitochondrial Carrier (Mc) Tcdb:2.A.29.7.2" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02422" sboTerm="SBO:0000185" id="R_MAR02422" name="Mitochondrial Carrier (Mc) Tcdb:2.A.29.7.2" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -389463,7 +389361,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02422">
+            <rdf:Description rdf:about="#R_MAR02422">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/r2380"/>
@@ -389475,18 +389373,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01580m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02661c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01580m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02661c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01580c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02661m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01580c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02661m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="sea"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02424" sboTerm="SBO:0000185" id="MAR02424" name="ATP-Binding Cassette (ABC) Tcdb:3.A.1.203.3" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02424" sboTerm="SBO:0000185" id="R_MAR02424" name="ATP-Binding Cassette (ABC) Tcdb:3.A.1.203.3" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -389495,7 +389393,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02424">
+            <rdf:Description rdf:about="#R_MAR02424">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/r2497"/>
@@ -389507,21 +389405,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01362c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01362c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01362x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01362x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Abcd1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02425" sboTerm="SBO:0000185" id="MAR02425" name="ATP-Binding Cassette (ABC) Tcdb:3.A.1.203.3" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02425" sboTerm="SBO:0000185" id="R_MAR02425" name="ATP-Binding Cassette (ABC) Tcdb:3.A.1.203.3" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -389530,7 +389428,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02425">
+            <rdf:Description rdf:about="#R_MAR02425">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/r2498"/>
@@ -389542,21 +389440,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02674c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02674c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02674x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02674x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Abcd1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02427" sboTerm="SBO:0000185" id="MAR02427" name="Utilized Transport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02427" sboTerm="SBO:0000185" id="R_MAR02427" name="Utilized Transport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -389565,7 +389463,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02427">
+            <rdf:Description rdf:about="#R_MAR02427">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/r2507"/>
@@ -389577,15 +389475,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01362c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01362c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01362r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01362r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR02429" sboTerm="SBO:0000185" id="MAR02429" name="Utilized Transport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02429" sboTerm="SBO:0000185" id="R_MAR02429" name="Utilized Transport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -389594,7 +389492,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02429">
+            <rdf:Description rdf:about="#R_MAR02429">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/r2508"/>
@@ -389606,15 +389504,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02348r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02674c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02674c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02674r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02674r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR02431" sboTerm="SBO:0000185" id="MAR02431" name="Utilized Transport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02431" sboTerm="SBO:0000185" id="R_MAR02431" name="Utilized Transport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -389623,7 +389521,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02431">
+            <rdf:Description rdf:about="#R_MAR02431">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/r2509"/>
@@ -389635,15 +389533,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02348r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02646c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02646c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02646r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02646r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR02432" sboTerm="SBO:0000185" id="MAR02432" name="Utilized Transport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02432" sboTerm="SBO:0000185" id="R_MAR02432" name="Utilized Transport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -389652,7 +389550,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02432">
+            <rdf:Description rdf:about="#R_MAR02432">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/r2510"/>
@@ -389664,15 +389562,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02348r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02939c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02939c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02939r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02939r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR02471" sboTerm="SBO:0000185" id="MAR02471" name="Utilized Transport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02471" sboTerm="SBO:0000185" id="R_MAR02471" name="Utilized Transport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -389681,7 +389579,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02471">
+            <rdf:Description rdf:about="#R_MAR02471">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/r2511"/>
@@ -389693,15 +389591,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02348r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02387c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02387c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02387r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02387r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR02473" sboTerm="SBO:0000185" id="MAR02473" name="Utilized Transport" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02473" sboTerm="SBO:0000185" id="R_MAR02473" name="Utilized Transport" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -389710,7 +389608,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02473">
+            <rdf:Description rdf:about="#R_MAR02473">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/r2512"/>
@@ -389722,15 +389620,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01932r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01932r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01932c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01932c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR02474" sboTerm="SBO:0000185" id="MAR02474" name="Utilized Transport" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02474" sboTerm="SBO:0000185" id="R_MAR02474" name="Utilized Transport" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -389739,7 +389637,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02474">
+            <rdf:Description rdf:about="#R_MAR02474">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/r2513"/>
@@ -389751,15 +389649,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02389r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02389r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02348r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02389c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02389c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR02476" sboTerm="SBO:0000185" id="MAR02476" name="Utilized Transport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02476" sboTerm="SBO:0000185" id="R_MAR02476" name="Utilized Transport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -389768,7 +389666,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02476">
+            <rdf:Description rdf:about="#R_MAR02476">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/r2514"/>
@@ -389780,15 +389678,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02348r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02675c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02675c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02675r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02675r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR02477" sboTerm="SBO:0000185" id="MAR02477" name="Utilized Transport" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02477" sboTerm="SBO:0000185" id="R_MAR02477" name="Utilized Transport" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -389797,7 +389695,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02477">
+            <rdf:Description rdf:about="#R_MAR02477">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/r2515"/>
@@ -389809,15 +389707,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01696r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01696r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01696c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01696c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR02479" sboTerm="SBO:0000185" id="MAR02479" name="Utilized Transport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02479" sboTerm="SBO:0000185" id="R_MAR02479" name="Utilized Transport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -389826,7 +389724,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02479">
+            <rdf:Description rdf:about="#R_MAR02479">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/r2537"/>
@@ -389838,13 +389736,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01934c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01934c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01934r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01934r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR02481" sboTerm="SBO:0000185" id="MAR02481" name="Utilized Transport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02481" sboTerm="SBO:0000185" id="R_MAR02481" name="Utilized Transport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -389853,7 +389751,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02481">
+            <rdf:Description rdf:about="#R_MAR02481">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/r2538"/>
@@ -389865,13 +389763,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01697c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01697c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01697r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01697r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR02490" sboTerm="SBO:0000176" id="MAR02490" name="Ribonucleoside-Diphosphate Reductase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02490" sboTerm="SBO:0000176" id="R_MAR02490" name="Ribonucleoside-Diphosphate Reductase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -389880,7 +389778,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02490">
+            <rdf:Description rdf:about="#R_MAR02490">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.17.4.1"/>
@@ -389891,16 +389789,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02990m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03130m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02990m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03130m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01756m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02666m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01756m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02666m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR02492" sboTerm="SBO:0000176" id="MAR02492" name="3-Hydroxyacyl Coenzyme A Dehydrogenase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02492" sboTerm="SBO:0000176" id="R_MAR02492" name="3-Hydroxyacyl Coenzyme A Dehydrogenase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -389909,7 +389807,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02492">
+            <rdf:Description rdf:about="#R_MAR02492">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.35"/>
@@ -389922,16 +389820,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02552c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00083c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00083c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00884c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00884c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR02494" sboTerm="SBO:0000176" id="MAR02494" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02494" sboTerm="SBO:0000176" id="R_MAR02494" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -389940,7 +389838,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02494">
+            <rdf:Description rdf:about="#R_MAR02494">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/RE0569E"/>
@@ -389954,20 +389852,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02444e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01773e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02444e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01773e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01596e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00866e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01596e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00866e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Loxl2"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02496" sboTerm="SBO:0000176" id="MAR02496" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02496" sboTerm="SBO:0000176" id="R_MAR02496" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -389976,7 +389874,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02496">
+            <rdf:Description rdf:about="#R_MAR02496">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/RE0572N"/>
@@ -389990,19 +389888,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00040n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00040n" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02554n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01725n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01725n" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG34174"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02519" sboTerm="SBO:0000176" id="MAR02519" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02519" sboTerm="SBO:0000176" id="R_MAR02519" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -390011,7 +389909,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02519">
+            <rdf:Description rdf:about="#R_MAR02519">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.2.2"/>
@@ -390024,17 +389922,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02444r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02678r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02444r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02678r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01596r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00890r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01596r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00890r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR02521" sboTerm="SBO:0000176" id="MAR02521" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02521" sboTerm="SBO:0000176" id="R_MAR02521" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -390043,7 +389941,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02521">
+            <rdf:Description rdf:about="#R_MAR02521">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.4.9"/>
@@ -390058,13 +389956,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00890r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00890r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02554r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00793r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00793r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -390073,7 +389971,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02525" sboTerm="SBO:0000176" id="MAR02525" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02525" sboTerm="SBO:0000176" id="R_MAR02525" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -390082,7 +389980,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02525">
+            <rdf:Description rdf:about="#R_MAR02525">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.4.6"/>
@@ -390095,19 +389993,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00057n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00057n" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02554n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02941n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02941n" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="lmgA"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02527" sboTerm="SBO:0000176" id="MAR02527" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02527" sboTerm="SBO:0000176" id="R_MAR02527" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -390116,7 +390014,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02527">
+            <rdf:Description rdf:about="#R_MAR02527">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/RE0691C"/>
@@ -390130,14 +390028,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00969c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00969c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00557c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00557c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR02529" sboTerm="SBO:0000176" id="MAR02529" name="Dihydrolipoyl Dehydrogenase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02529" sboTerm="SBO:0000176" id="R_MAR02529" name="Dihydrolipoyl Dehydrogenase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -390146,7 +390044,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02529">
+            <rdf:Description rdf:about="#R_MAR02529">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.8.1.4"/>
@@ -390159,19 +390057,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02041e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02986e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02986e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02158e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02158e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Pxn"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02531" sboTerm="SBO:0000176" id="MAR02531" name="Dihydrolipoyl Dehydrogenase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02531" sboTerm="SBO:0000176" id="R_MAR02531" name="Dihydrolipoyl Dehydrogenase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -390180,7 +390078,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02531">
+            <rdf:Description rdf:about="#R_MAR02531">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.8.1.4"/>
@@ -390193,13 +390091,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02041l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02986l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02986l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02158l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02158l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -390208,7 +390106,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02532" sboTerm="SBO:0000176" id="MAR02532" name="Dihydrolipoyl Dehydrogenase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02532" sboTerm="SBO:0000176" id="R_MAR02532" name="Dihydrolipoyl Dehydrogenase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -390217,7 +390115,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02532">
+            <rdf:Description rdf:about="#R_MAR02532">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.8.1.4"/>
@@ -390230,13 +390128,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02041m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02986m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02986m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02158m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02158m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -390246,7 +390144,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02534" sboTerm="SBO:0000176" id="MAR02534" name="Dihydrolipoyl Dehydrogenase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02534" sboTerm="SBO:0000176" id="R_MAR02534" name="Dihydrolipoyl Dehydrogenase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -390255,7 +390153,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02534">
+            <rdf:Description rdf:about="#R_MAR02534">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.8.1.4"/>
@@ -390268,19 +390166,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02041n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02986n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02986n" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02158n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02158n" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Pxn"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02615" sboTerm="SBO:0000176" id="MAR02615" name="Glucuronosyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02615" sboTerm="SBO:0000176" id="R_MAR02615" name="Glucuronosyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -390289,7 +390187,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02615">
+            <rdf:Description rdf:about="#R_MAR02615">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.17"/>
@@ -390300,13 +390198,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03109c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03337c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03109c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03337c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03341c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03341c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -390315,7 +390213,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02617" sboTerm="SBO:0000176" id="MAR02617" name="Glucuronosyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02617" sboTerm="SBO:0000176" id="R_MAR02617" name="Glucuronosyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -390324,7 +390222,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02617">
+            <rdf:Description rdf:about="#R_MAR02617">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.17"/>
@@ -390337,13 +390235,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03109r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03337r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03109r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03337r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03341r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03341r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -390363,7 +390261,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02619" sboTerm="SBO:0000176" id="MAR02619" name="Glucuronosyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02619" sboTerm="SBO:0000176" id="R_MAR02619" name="Glucuronosyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -390372,7 +390270,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02619">
+            <rdf:Description rdf:about="#R_MAR02619">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.17"/>
@@ -390383,13 +390281,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03109c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03338c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03109c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03338c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03342c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03342c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -390398,7 +390296,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02627" sboTerm="SBO:0000176" id="MAR02627" name="Glucuronosyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02627" sboTerm="SBO:0000176" id="R_MAR02627" name="Glucuronosyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -390407,7 +390305,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02627">
+            <rdf:Description rdf:about="#R_MAR02627">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.17"/>
@@ -390420,13 +390318,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03109r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03338r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03109r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03338r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03342r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03342r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -390446,7 +390344,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02628" sboTerm="SBO:0000176" id="MAR02628" name="Glucuronosyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02628" sboTerm="SBO:0000176" id="R_MAR02628" name="Glucuronosyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -390455,7 +390353,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02628">
+            <rdf:Description rdf:about="#R_MAR02628">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.17"/>
@@ -390466,13 +390364,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03109c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03339c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03109c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03339c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03343c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03343c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -390481,7 +390379,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02631" sboTerm="SBO:0000176" id="MAR02631" name="Glucuronosyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02631" sboTerm="SBO:0000176" id="R_MAR02631" name="Glucuronosyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -390490,7 +390388,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02631">
+            <rdf:Description rdf:about="#R_MAR02631">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.17"/>
@@ -390503,13 +390401,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03109r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03339r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03109r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03339r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03343r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03343r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -390529,7 +390427,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02632" sboTerm="SBO:0000176" id="MAR02632" name="Glucuronosyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02632" sboTerm="SBO:0000176" id="R_MAR02632" name="Glucuronosyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -390538,7 +390436,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02632">
+            <rdf:Description rdf:about="#R_MAR02632">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.17"/>
@@ -390549,13 +390447,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03109c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03340c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03109c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03340c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03344c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03344c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -390564,7 +390462,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02637" sboTerm="SBO:0000176" id="MAR02637" name="Glucuronosyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02637" sboTerm="SBO:0000176" id="R_MAR02637" name="Glucuronosyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -390573,7 +390471,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02637">
+            <rdf:Description rdf:about="#R_MAR02637">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.17"/>
@@ -390586,13 +390484,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03109r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03340r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03109r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03340r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03344r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03344r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -390612,7 +390510,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02639" sboTerm="SBO:0000176" id="MAR02639" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02639" sboTerm="SBO:0000176" id="R_MAR02639" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -390621,7 +390519,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02639">
+            <rdf:Description rdf:about="#R_MAR02639">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/RE0936E"/>
@@ -390633,15 +390531,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01387e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01387e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02184e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01386e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02184e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01386e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR02641" sboTerm="SBO:0000176" id="MAR02641" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02641" sboTerm="SBO:0000176" id="R_MAR02641" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -390650,7 +390548,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02641">
+            <rdf:Description rdf:about="#R_MAR02641">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.6.2"/>
@@ -390663,15 +390561,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02563e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02563e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02184e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02562e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02184e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02562e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR02643" sboTerm="SBO:0000176" id="MAR02643" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02643" sboTerm="SBO:0000176" id="R_MAR02643" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -390680,7 +390578,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02643">
+            <rdf:Description rdf:about="#R_MAR02643">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/RE0938E"/>
@@ -390692,15 +390590,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01348e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01348e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02724e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01347e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02724e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01347e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR02645" sboTerm="SBO:0000176" id="MAR02645" name="Peroxidase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02645" sboTerm="SBO:0000176" id="R_MAR02645" name="Peroxidase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -390709,7 +390607,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02645">
+            <rdf:Description rdf:about="#R_MAR02645">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.11.1.7"/>
@@ -390720,14 +390618,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02041c" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM03330c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02041c" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM03330c" stoichiometry="2" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="6" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02949c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03525c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="6" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02949c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03525c" stoichiometry="2" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -390736,7 +390634,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02647" sboTerm="SBO:0000176" id="MAR02647" name="Peroxidase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02647" sboTerm="SBO:0000176" id="R_MAR02647" name="Peroxidase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -390745,7 +390643,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02647">
+            <rdf:Description rdf:about="#R_MAR02647">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.11.1.7"/>
@@ -390757,20 +390655,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02041e" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM03330e" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02041e" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM03330e" stoichiometry="2" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039e" stoichiometry="6" constant="true"/>
-          <speciesReference species="MAM02040e" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02949e" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03525e" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="6" constant="true"/>
+          <speciesReference species="M_MAM02040e" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02949e" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03525e" stoichiometry="2" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Pxn"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02694" sboTerm="SBO:0000176" id="MAR02694" name="Peroxidase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02694" sboTerm="SBO:0000176" id="R_MAR02694" name="Peroxidase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -390779,7 +390677,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02694">
+            <rdf:Description rdf:about="#R_MAR02694">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.11.1.7"/>
@@ -390790,14 +390688,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02041l" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM03330l" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02041l" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM03330l" stoichiometry="2" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039l" stoichiometry="6" constant="true"/>
-          <speciesReference species="MAM02040l" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02949l" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03525l" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02039l" stoichiometry="6" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02949l" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03525l" stoichiometry="2" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -390806,7 +390704,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02696" sboTerm="SBO:0000176" id="MAR02696" name="Peroxidase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02696" sboTerm="SBO:0000176" id="R_MAR02696" name="Peroxidase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -390815,7 +390713,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02696">
+            <rdf:Description rdf:about="#R_MAR02696">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.11.1.7"/>
@@ -390826,20 +390724,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02041n" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM03330n" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02041n" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM03330n" stoichiometry="2" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039n" stoichiometry="6" constant="true"/>
-          <speciesReference species="MAM02040n" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02949n" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03525n" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02039n" stoichiometry="6" constant="true"/>
+          <speciesReference species="M_MAM02040n" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02949n" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03525n" stoichiometry="2" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Pxn"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02721" sboTerm="SBO:0000176" id="MAR02721" name="Thimet Oligopeptidase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02721" sboTerm="SBO:0000176" id="R_MAR02721" name="Thimet Oligopeptidase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -390848,7 +390746,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02721">
+            <rdf:Description rdf:about="#R_MAR02721">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.4.24.15"/>
@@ -390861,16 +390759,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03345c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03345c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01762c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03348c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03349c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01762c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03349c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR02765" sboTerm="SBO:0000176" id="MAR02765" name="Kynurenine-Oxoglutarate Transaminase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02765" sboTerm="SBO:0000176" id="R_MAR02765" name="Kynurenine-Oxoglutarate Transaminase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -390879,7 +390777,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02765">
+            <rdf:Description rdf:about="#R_MAR02765">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.6.1.7"/>
@@ -390890,13 +390788,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01306m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02319m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01306m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02319m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01974m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00990m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01974m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00990m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -390905,7 +390803,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02767" sboTerm="SBO:0000176" id="MAR02767" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02767" sboTerm="SBO:0000176" id="R_MAR02767" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -390914,7 +390812,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02767">
+            <rdf:Description rdf:about="#R_MAR02767">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.4.24.16"/>
@@ -390927,15 +390825,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00035m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00035m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00607m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00607m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -390944,7 +390842,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02779" sboTerm="SBO:0000176" id="MAR02779" name="Aldehyde Reductase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02779" sboTerm="SBO:0000176" id="R_MAR02779" name="Aldehyde Reductase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -390953,7 +390851,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02779">
+            <rdf:Description rdf:about="#R_MAR02779">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.21"/>
@@ -390966,16 +390864,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01682c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01682c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01965c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01965c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR02781" sboTerm="SBO:0000176" id="MAR02781" name="Phosphatidylinositol-3,4-Bisphosphate 4-Phosphatase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02781" sboTerm="SBO:0000176" id="R_MAR02781" name="Phosphatidylinositol-3,4-Bisphosphate 4-Phosphatase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -390984,7 +390882,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02781">
+            <rdf:Description rdf:about="#R_MAR02781">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.3.66"/>
@@ -390997,18 +390895,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02736m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02736m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02751m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00554m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00554m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG12170"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02782" sboTerm="SBO:0000176" id="MAR02782" name="Phosphatidylinositol-3,4-Bisphosphate 4-Phosphatase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02782" sboTerm="SBO:0000176" id="R_MAR02782" name="Phosphatidylinositol-3,4-Bisphosphate 4-Phosphatase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -391017,7 +390915,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02782">
+            <rdf:Description rdf:about="#R_MAR02782">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.3.66"/>
@@ -391030,15 +390928,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02736n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02736n" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00554n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00554n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751n" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR02784" sboTerm="SBO:0000176" id="MAR02784" name="Phosphatidylinositol-3,4,5-Trisphosphate 3-Phosphatase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02784" sboTerm="SBO:0000176" id="R_MAR02784" name="Phosphatidylinositol-3,4,5-Trisphosphate 3-Phosphatase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -391047,7 +390945,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02784">
+            <rdf:Description rdf:about="#R_MAR02784">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.3.67"/>
@@ -391060,15 +390958,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00554n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00554n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040n" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02750n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02750n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751n" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR02786" sboTerm="SBO:0000176" id="MAR02786" name="Long-Chain-Fatty-Acid- Coenzyme A Ligase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02786" sboTerm="SBO:0000176" id="R_MAR02786" name="Long-Chain-Fatty-Acid- Coenzyme A Ligase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -391077,7 +390975,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02786">
+            <rdf:Description rdf:about="#R_MAR02786">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.3"/>
@@ -391088,14 +390986,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02387m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02387m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01334m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02391m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02391m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -391104,7 +391002,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02802" sboTerm="SBO:0000176" id="MAR02802" name="Long-Chain-Fatty-Acid- Coenzyme A Ligase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02802" sboTerm="SBO:0000176" id="R_MAR02802" name="Long-Chain-Fatty-Acid- Coenzyme A Ligase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -391113,7 +391011,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02802">
+            <rdf:Description rdf:about="#R_MAR02802">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.3"/>
@@ -391124,14 +391022,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02387x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02387x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01334x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02391x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02391x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -391141,7 +391039,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02804" sboTerm="SBO:0000176" id="MAR02804" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02804" sboTerm="SBO:0000176" id="R_MAR02804" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -391150,7 +391048,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02804">
+            <rdf:Description rdf:about="#R_MAR02804">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.99.13"/>
@@ -391162,12 +391060,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01802x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02391x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01802x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02391x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01803x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03010x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01803x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03010x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -391176,7 +391074,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02808" sboTerm="SBO:0000176" id="MAR02808" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02808" sboTerm="SBO:0000176" id="R_MAR02808" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -391185,7 +391083,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02808">
+            <rdf:Description rdf:about="#R_MAR02808">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.99.13"/>
@@ -391197,12 +391095,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01577x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01802x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01577x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01802x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01803x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03009x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01803x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03009x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -391211,7 +391109,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02810" sboTerm="SBO:0000176" id="MAR02810" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02810" sboTerm="SBO:0000176" id="R_MAR02810" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -391220,7 +391118,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02810">
+            <rdf:Description rdf:about="#R_MAR02810">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.99.13"/>
@@ -391232,12 +391130,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01576x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01802x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01576x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01802x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01803x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03030x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01803x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03030x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -391246,7 +391144,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02818" sboTerm="SBO:0000176" id="MAR02818" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02818" sboTerm="SBO:0000176" id="R_MAR02818" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -391255,7 +391153,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02818">
+            <rdf:Description rdf:about="#R_MAR02818">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.99.13"/>
@@ -391267,12 +391165,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00980x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01802x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00980x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01802x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00678x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01803x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00678x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01803x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -391281,7 +391179,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02820" sboTerm="SBO:0000176" id="MAR02820" name="3-Hydroxyacyl Coenzyme A Dehydrogenase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02820" sboTerm="SBO:0000176" id="R_MAR02820" name="3-Hydroxyacyl Coenzyme A Dehydrogenase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -391290,7 +391188,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02820">
+            <rdf:Description rdf:about="#R_MAR02820">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.35"/>
@@ -391303,16 +391201,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02552c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00081c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00081c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00855c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00855c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR02826" sboTerm="SBO:0000176" id="MAR02826" name="3-Hydroxyacyl Coenzyme A Dehydrogenase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02826" sboTerm="SBO:0000176" id="R_MAR02826" name="3-Hydroxyacyl Coenzyme A Dehydrogenase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -391321,7 +391219,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02826">
+            <rdf:Description rdf:about="#R_MAR02826">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.35"/>
@@ -391334,16 +391232,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02552c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00696c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00696c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00854c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00854c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR02828" sboTerm="SBO:0000176" id="MAR02828" name="3-Hydroxyacyl Coenzyme A Dehydrogenase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02828" sboTerm="SBO:0000176" id="R_MAR02828" name="3-Hydroxyacyl Coenzyme A Dehydrogenase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -391352,7 +391250,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02828">
+            <rdf:Description rdf:about="#R_MAR02828">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.35"/>
@@ -391365,16 +391263,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02552c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00082c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00082c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00883c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00883c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR02858" sboTerm="SBO:0000176" id="MAR02858" name="Alcohol Dehydrogenase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02858" sboTerm="SBO:0000176" id="R_MAR02858" name="Alcohol Dehydrogenase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -391383,7 +391281,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02858">
+            <rdf:Description rdf:about="#R_MAR02858">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.1"/>
@@ -391394,19 +391292,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02554m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01110m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01110m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01102m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01102m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="T3dh"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02860" sboTerm="SBO:0000176" id="MAR02860" name="Steroid Delta-Isomerase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02860" sboTerm="SBO:0000176" id="R_MAR02860" name="Steroid Delta-Isomerase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -391415,7 +391313,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02860">
+            <rdf:Description rdf:about="#R_MAR02860">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/5.3.3.1"/>
@@ -391430,16 +391328,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02552c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01183c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01183c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01182c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01182c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR02881" sboTerm="SBO:0000176" id="MAR02881" name="Steroid Delta-Isomerase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02881" sboTerm="SBO:0000176" id="R_MAR02881" name="Steroid Delta-Isomerase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -391448,7 +391346,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02881">
+            <rdf:Description rdf:about="#R_MAR02881">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/5.3.3.1"/>
@@ -391461,19 +391359,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02552m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00592m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00592m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01182m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01182m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG7724"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02883" sboTerm="SBO:0000176" id="MAR02883" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02883" sboTerm="SBO:0000176" id="R_MAR02883" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -391482,7 +391380,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02883">
+            <rdf:Description rdf:about="#R_MAR02883">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.5.3.11"/>
@@ -391495,16 +391393,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02552c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01094c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01094c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00756c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00756c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR02885" sboTerm="SBO:0000176" id="MAR02885" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02885" sboTerm="SBO:0000176" id="R_MAR02885" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -391513,7 +391411,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02885">
+            <rdf:Description rdf:about="#R_MAR02885">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.5.3.11"/>
@@ -391525,13 +391423,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01093m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01093m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00756m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00756m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -391540,7 +391438,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02887" sboTerm="SBO:0000176" id="MAR02887" name="Quinine 3-Monooxygenase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02887" sboTerm="SBO:0000176" id="R_MAR02887" name="Quinine 3-Monooxygenase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -391549,7 +391447,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02887">
+            <rdf:Description rdf:about="#R_MAR02887">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.13.67"/>
@@ -391562,18 +391460,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01078c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01078c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01089c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01089c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR02889" sboTerm="SBO:0000176" id="MAR02889" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02889" sboTerm="SBO:0000176" id="R_MAR02889" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -391582,7 +391480,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02889">
+            <rdf:Description rdf:about="#R_MAR02889">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/5.3.3.8"/>
@@ -391595,17 +391493,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00756c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00756c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00758c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00758c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR02891" sboTerm="SBO:0000176" id="MAR02891" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02891" sboTerm="SBO:0000176" id="R_MAR02891" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -391614,7 +391512,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02891">
+            <rdf:Description rdf:about="#R_MAR02891">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.13.67"/>
@@ -391627,14 +391525,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00756m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00756m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00758m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02555m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00758m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02555m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -391643,7 +391541,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02893" sboTerm="SBO:0000176" id="MAR02893" name="Quinine 3-Monooxygenase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02893" sboTerm="SBO:0000176" id="R_MAR02893" name="Quinine 3-Monooxygenase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -391652,7 +391550,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02893">
+            <rdf:Description rdf:about="#R_MAR02893">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.13.67"/>
@@ -391665,18 +391563,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01089c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01089c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01085c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01085c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR02895" sboTerm="SBO:0000176" id="MAR02895" name="3Alpha-Hydroxysteroid 3-Dehydrogenase (Si-Specific)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02895" sboTerm="SBO:0000176" id="R_MAR02895" name="3Alpha-Hydroxysteroid 3-Dehydrogenase (Si-Specific)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -391685,7 +391583,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02895">
+            <rdf:Description rdf:about="#R_MAR02895">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.50"/>
@@ -391698,16 +391596,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01095m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554m" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01095m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554m" stoichiometry="2" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039m" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02555m" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM01182m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02555m" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01182m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR02933" sboTerm="SBO:0000176" id="MAR02933" name="Quinine 3-Monooxygenase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02933" sboTerm="SBO:0000176" id="R_MAR02933" name="Quinine 3-Monooxygenase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -391716,7 +391614,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02933">
+            <rdf:Description rdf:about="#R_MAR02933">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.13.67"/>
@@ -391729,18 +391627,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01089c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01089c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01086c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01086c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR02934" sboTerm="SBO:0000176" id="MAR02934" name="Quinine 3-Monooxygenase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02934" sboTerm="SBO:0000176" id="R_MAR02934" name="Quinine 3-Monooxygenase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -391749,7 +391647,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02934">
+            <rdf:Description rdf:about="#R_MAR02934">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.13.67"/>
@@ -391762,18 +391660,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01089c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01089c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01088c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01088c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR02935" sboTerm="SBO:0000176" id="MAR02935" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02935" sboTerm="SBO:0000176" id="R_MAR02935" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -391782,7 +391680,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02935">
+            <rdf:Description rdf:about="#R_MAR02935">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.1"/>
@@ -391795,18 +391693,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01095c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01095c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01094c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01094c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR02936" sboTerm="SBO:0000176" id="MAR02936" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02936" sboTerm="SBO:0000176" id="R_MAR02936" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -391815,7 +391713,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02936">
+            <rdf:Description rdf:about="#R_MAR02936">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/5.3.3.1"/>
@@ -391828,16 +391726,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00623c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00623c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00763c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00763c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR02937" sboTerm="SBO:0000176" id="MAR02937" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02937" sboTerm="SBO:0000176" id="R_MAR02937" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -391846,7 +391744,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02937">
+            <rdf:Description rdf:about="#R_MAR02937">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/RE1828C"/>
@@ -391858,18 +391756,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00764c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00764c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00761c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00761c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR02938" sboTerm="SBO:0000176" id="MAR02938" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02938" sboTerm="SBO:0000176" id="R_MAR02938" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -391878,7 +391776,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02938">
+            <rdf:Description rdf:about="#R_MAR02938">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/RE1829C"/>
@@ -391890,16 +391788,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00761c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00761c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01180c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01180c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR02939" sboTerm="SBO:0000176" id="MAR02939" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02939" sboTerm="SBO:0000176" id="R_MAR02939" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -391908,7 +391806,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02939">
+            <rdf:Description rdf:about="#R_MAR02939">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.13.67"/>
@@ -391921,17 +391819,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00763c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00763c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00764c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00764c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR02941" sboTerm="SBO:0000176" id="MAR02941" name="Propionyl Coenzyme A C2-Trimethyltridecanoyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02941" sboTerm="SBO:0000176" id="R_MAR02941" name="Propionyl Coenzyme A C2-Trimethyltridecanoyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -391940,7 +391838,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02941">
+            <rdf:Description rdf:about="#R_MAR02941">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.154"/>
@@ -391953,17 +391851,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00614c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00614c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01434c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02774c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01434c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02774c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR02950" sboTerm="SBO:0000176" id="MAR02950" name="Propionyl Coenzyme A C2-Trimethyltridecanoyltransferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02950" sboTerm="SBO:0000176" id="R_MAR02950" name="Propionyl Coenzyme A C2-Trimethyltridecanoyltransferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -391972,7 +391870,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02950">
+            <rdf:Description rdf:about="#R_MAR02950">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.154"/>
@@ -391983,20 +391881,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00614m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00614m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02774m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01434m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02774m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01434m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="ScpX"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02953" sboTerm="SBO:0000176" id="MAR02953" name="Propionyl Coenzyme A C2-Trimethyltridecanoyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02953" sboTerm="SBO:0000176" id="R_MAR02953" name="Propionyl Coenzyme A C2-Trimethyltridecanoyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -392005,7 +391903,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02953">
+            <rdf:Description rdf:about="#R_MAR02953">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.154"/>
@@ -392018,20 +391916,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00614x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00614x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01434x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02774x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01434x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02774x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="ScpX"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR02960" sboTerm="SBO:0000176" id="MAR02960" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02960" sboTerm="SBO:0000176" id="R_MAR02960" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -392040,7 +391938,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02960">
+            <rdf:Description rdf:about="#R_MAR02960">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.5.1.18"/>
@@ -392053,18 +391951,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00290c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00290c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01023c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01023c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR02993" sboTerm="SBO:0000176" id="MAR02993" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02993" sboTerm="SBO:0000176" id="R_MAR02993" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -392073,7 +391971,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02993">
+            <rdf:Description rdf:about="#R_MAR02993">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.5.1.18"/>
@@ -392086,18 +391984,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01230c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01230c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01024c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01024c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR02997" sboTerm="SBO:0000176" id="MAR02997" name="1-Phosphatidylinositol-4-Phosphate 5-Kinase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02997" sboTerm="SBO:0000176" id="R_MAR02997" name="1-Phosphatidylinositol-4-Phosphate 5-Kinase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -392106,7 +392004,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02997">
+            <rdf:Description rdf:about="#R_MAR02997">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.1.68"/>
@@ -392119,19 +392017,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02735g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02735g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02734g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02734g" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="PIP5K59B"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03004" sboTerm="SBO:0000176" id="MAR03004" name="1-Phosphatidylinositol-4-Phosphate 5-Kinase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03004" sboTerm="SBO:0000176" id="R_MAR03004" name="1-Phosphatidylinositol-4-Phosphate 5-Kinase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -392140,7 +392038,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03004">
+            <rdf:Description rdf:about="#R_MAR03004">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.1.68"/>
@@ -392153,19 +392051,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02735r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02735r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02734r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02734r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="PIP4K"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03010" sboTerm="SBO:0000176" id="MAR03010" name="Phosphatidate Phosphatase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03010" sboTerm="SBO:0000176" id="R_MAR03010" name="Phosphatidate Phosphatase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -392174,7 +392072,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03010">
+            <rdf:Description rdf:about="#R_MAR03010">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.3.4"/>
@@ -392187,12 +392085,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00534g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00534g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02751g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00635g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00635g" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -392201,7 +392099,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03012" sboTerm="SBO:0000176" id="MAR03012" name="Phosphatidate Phosphatase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03012" sboTerm="SBO:0000176" id="R_MAR03012" name="Phosphatidate Phosphatase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -392210,7 +392108,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03012">
+            <rdf:Description rdf:about="#R_MAR03012">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.3.4"/>
@@ -392223,12 +392121,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00534r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00534r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02751r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00635r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00635r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -392237,7 +392135,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03016" sboTerm="SBO:0000176" id="MAR03016" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03016" sboTerm="SBO:0000176" id="R_MAR03016" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -392246,7 +392144,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03016">
+            <rdf:Description rdf:about="#R_MAR03016">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/RE2078M"/>
@@ -392260,14 +392158,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02786m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02786m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02777m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02777m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03031" sboTerm="SBO:0000176" id="MAR03031" name="Glucuronosyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03031" sboTerm="SBO:0000176" id="R_MAR03031" name="Glucuronosyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -392276,7 +392174,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03031">
+            <rdf:Description rdf:about="#R_MAR03031">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.17"/>
@@ -392287,12 +392185,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03109c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03346c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03109c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03346c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02826c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02826c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -392301,7 +392199,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03036" sboTerm="SBO:0000176" id="MAR03036" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03036" sboTerm="SBO:0000176" id="R_MAR03036" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -392310,7 +392208,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03036">
+            <rdf:Description rdf:about="#R_MAR03036">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.99.1"/>
@@ -392323,17 +392221,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03327c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03327c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM02553c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03347c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM02553c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03347c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03039" sboTerm="SBO:0000176" id="MAR03039" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03039" sboTerm="SBO:0000176" id="R_MAR03039" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -392342,7 +392240,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03039">
+            <rdf:Description rdf:about="#R_MAR03039">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/RE2221C"/>
@@ -392354,18 +392252,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03329c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03329c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03328c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03328c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03040" sboTerm="SBO:0000176" id="MAR03040" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03040" sboTerm="SBO:0000176" id="R_MAR03040" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -392374,7 +392272,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03040">
+            <rdf:Description rdf:about="#R_MAR03040">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/RE2221M"/>
@@ -392386,15 +392284,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03329m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03329m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03328m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03328m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -392403,7 +392301,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03041" sboTerm="SBO:0000176" id="MAR03041" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03041" sboTerm="SBO:0000176" id="R_MAR03041" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -392412,7 +392310,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03041">
+            <rdf:Description rdf:about="#R_MAR03041">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.1.1.6"/>
@@ -392425,13 +392323,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03376c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03376c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03355c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03355c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03042" sboTerm="SBO:0000176" id="MAR03042" name="Chymase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03042" sboTerm="SBO:0000176" id="R_MAR03042" name="Chymase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -392440,7 +392338,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03042">
+            <rdf:Description rdf:about="#R_MAR03042">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.4.21.39"/>
@@ -392453,19 +392351,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040e" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02318e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040e" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02318e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02360e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02724e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02315e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02360e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02724e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02315e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG32376"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03043" sboTerm="SBO:0000176" id="MAR03043" name="Carboxypeptidase A" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03043" sboTerm="SBO:0000176" id="R_MAR03043" name="Carboxypeptidase A" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -392474,7 +392372,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03043">
+            <rdf:Description rdf:about="#R_MAR03043">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.4.17.1"/>
@@ -392487,12 +392385,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02318e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02318e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02360e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02316e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02360e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02316e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -392502,7 +392400,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03045" sboTerm="SBO:0000176" id="MAR03045" name="Carboxypeptidase A" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03045" sboTerm="SBO:0000176" id="R_MAR03045" name="Carboxypeptidase A" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -392511,7 +392409,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03045">
+            <rdf:Description rdf:about="#R_MAR03045">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.4.17.1"/>
@@ -392524,12 +392422,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02570e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02570e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02360e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02569e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02360e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02569e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -392539,7 +392437,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03047" sboTerm="SBO:0000176" id="MAR03047" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03047" sboTerm="SBO:0000176" id="R_MAR03047" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -392548,7 +392446,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03047">
+            <rdf:Description rdf:about="#R_MAR03047">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.99.10"/>
@@ -392561,15 +392459,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01328c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03103c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01328c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03103c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01329c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03102c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01329c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03102c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03048" sboTerm="SBO:0000176" id="MAR03048" name="Kynurenine-Oxoglutarate Transaminase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03048" sboTerm="SBO:0000176" id="R_MAR03048" name="Kynurenine-Oxoglutarate Transaminase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -392578,7 +392476,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03048">
+            <rdf:Description rdf:about="#R_MAR03048">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.6.1.7"/>
@@ -392589,19 +392487,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01306m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00788m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01306m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00788m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01974m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03151m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01974m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03151m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG6321"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03049" sboTerm="SBO:0000176" id="MAR03049" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03049" sboTerm="SBO:0000176" id="R_MAR03049" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -392610,7 +392508,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03049">
+            <rdf:Description rdf:about="#R_MAR03049">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.14.1"/>
@@ -392623,15 +392521,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03370c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03370c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02041c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03371c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03050" sboTerm="SBO:0000176" id="MAR03050" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03050" sboTerm="SBO:0000176" id="R_MAR03050" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -392640,7 +392538,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03050">
+            <rdf:Description rdf:about="#R_MAR03050">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/RE2377C"/>
@@ -392652,15 +392550,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03372c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03372c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02041c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03373c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03373c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03051" sboTerm="SBO:0000176" id="MAR03051" name="Glucuronosyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03051" sboTerm="SBO:0000176" id="R_MAR03051" name="Glucuronosyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -392669,7 +392567,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03051">
+            <rdf:Description rdf:about="#R_MAR03051">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.17"/>
@@ -392682,12 +392580,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03109r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00766r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03109r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00766r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03106r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01321r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01321r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -392707,7 +392605,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03052" sboTerm="SBO:0000176" id="MAR03052" name="Glucuronosyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03052" sboTerm="SBO:0000176" id="R_MAR03052" name="Glucuronosyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -392716,7 +392614,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03052">
+            <rdf:Description rdf:about="#R_MAR03052">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.17"/>
@@ -392729,12 +392627,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03109r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01923r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03109r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01923r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03106r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01924r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01924r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -392754,7 +392652,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03119" sboTerm="SBO:0000176" id="MAR03119" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03119" sboTerm="SBO:0000176" id="R_MAR03119" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -392763,7 +392661,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03119">
+            <rdf:Description rdf:about="#R_MAR03119">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.4.21.59"/>
@@ -392776,15 +392674,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02460c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02460c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01161c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01161c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="2" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03120" sboTerm="SBO:0000176" id="MAR03120" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03120" sboTerm="SBO:0000176" id="R_MAR03120" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -392793,7 +392691,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03120">
+            <rdf:Description rdf:about="#R_MAR03120">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.5.1.18"/>
@@ -392806,16 +392704,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="4" constant="true"/>
-          <speciesReference species="MAM02460c" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM02631c" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM02460c" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM02631c" stoichiometry="4" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01839c" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01839c" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03124" sboTerm="SBO:0000176" id="MAR03124" name="Glutathione Transferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03124" sboTerm="SBO:0000176" id="R_MAR03124" name="Glutathione Transferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -392824,7 +392722,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03124">
+            <rdf:Description rdf:about="#R_MAR03124">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.5.1.18"/>
@@ -392837,12 +392735,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02026m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00787m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00787m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01979m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01979m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -392851,7 +392749,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03126" sboTerm="SBO:0000176" id="MAR03126" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03126" sboTerm="SBO:0000176" id="R_MAR03126" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -392860,7 +392758,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03126">
+            <rdf:Description rdf:about="#R_MAR03126">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.5.1.18"/>
@@ -392873,15 +392771,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03369c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03369c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03374c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03375c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03374c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03375c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03127" sboTerm="SBO:0000176" id="MAR03127" name="Peptidyl-Dipeptidase A" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03127" sboTerm="SBO:0000176" id="R_MAR03127" name="Peptidyl-Dipeptidase A" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -392890,7 +392788,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03127">
+            <rdf:Description rdf:about="#R_MAR03127">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.4.15.1"/>
@@ -392903,15 +392801,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02551e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02551e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02550e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02429e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02550e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02429e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03131" sboTerm="SBO:0000176" id="MAR03131" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03131" sboTerm="SBO:0000176" id="R_MAR03131" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -392920,7 +392818,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03131">
+            <rdf:Description rdf:about="#R_MAR03131">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/RE2452C"/>
@@ -392932,14 +392830,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03376c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03376c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03356c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03356c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03133" sboTerm="SBO:0000176" id="MAR03133" name="Quinine 3-Monooxygenase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03133" sboTerm="SBO:0000176" id="R_MAR03133" name="Quinine 3-Monooxygenase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -392948,7 +392846,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03133">
+            <rdf:Description rdf:about="#R_MAR03133">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.13.67"/>
@@ -392961,19 +392859,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03323c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03323c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01831c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03324c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01831c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03324c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03134" sboTerm="SBO:0000176" id="MAR03134" name="Quinine 3-Monooxygenase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03134" sboTerm="SBO:0000176" id="R_MAR03134" name="Quinine 3-Monooxygenase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -392982,7 +392880,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03134">
+            <rdf:Description rdf:about="#R_MAR03134">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.13.67"/>
@@ -392993,16 +392891,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03323r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03323r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01831r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03324r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01831r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03324r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -393011,7 +392909,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03138" sboTerm="SBO:0000176" id="MAR03138" name="Methionine Synthase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03138" sboTerm="SBO:0000176" id="R_MAR03138" name="Methionine Synthase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -393020,7 +392918,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03138">
+            <rdf:Description rdf:about="#R_MAR03138">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.1.1.13"/>
@@ -393033,15 +392931,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01599c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02877c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01599c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02877c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02871c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03322c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02871c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03322c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03140" sboTerm="SBO:0000176" id="MAR03140" name="Peroxidase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03140" sboTerm="SBO:0000176" id="R_MAR03140" name="Peroxidase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -393050,7 +392948,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03140">
+            <rdf:Description rdf:about="#R_MAR03140">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.11.1.7"/>
@@ -393063,19 +392961,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01442e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02041e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01442e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02156e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02156e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Pxn"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03141" sboTerm="SBO:0000176" id="MAR03141" name="Peroxidase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03141" sboTerm="SBO:0000176" id="R_MAR03141" name="Peroxidase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -393084,7 +392982,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03141">
+            <rdf:Description rdf:about="#R_MAR03141">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.11.1.7"/>
@@ -393097,13 +392995,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02041l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01442l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01442l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02156l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02156l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -393112,7 +393010,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03145" sboTerm="SBO:0000176" id="MAR03145" name="Peroxidase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03145" sboTerm="SBO:0000176" id="R_MAR03145" name="Peroxidase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -393121,7 +393019,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03145">
+            <rdf:Description rdf:about="#R_MAR03145">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.11.1.7"/>
@@ -393136,19 +393034,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02041n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01442n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01442n" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02156n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02156n" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Pxn"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03147" sboTerm="SBO:0000176" id="MAR03147" name="Peroxidase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03147" sboTerm="SBO:0000176" id="R_MAR03147" name="Peroxidase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -393157,7 +393055,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03147">
+            <rdf:Description rdf:about="#R_MAR03147">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.11.1.7"/>
@@ -393170,19 +393068,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02588e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02156e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02588e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02156e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02591e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02591e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Pxn"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03148" sboTerm="SBO:0000176" id="MAR03148" name="Peroxidase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03148" sboTerm="SBO:0000176" id="R_MAR03148" name="Peroxidase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -393191,7 +393089,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03148">
+            <rdf:Description rdf:about="#R_MAR03148">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.11.1.7"/>
@@ -393204,13 +393102,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02156l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02588l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02156l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02588l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02591l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02591l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -393219,7 +393117,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03152" sboTerm="SBO:0000176" id="MAR03152" name="Peroxidase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03152" sboTerm="SBO:0000176" id="R_MAR03152" name="Peroxidase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -393228,7 +393126,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03152">
+            <rdf:Description rdf:about="#R_MAR03152">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.11.1.7"/>
@@ -393241,19 +393139,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02156n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02588n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02156n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02588n" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02591n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02591n" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Pxn"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03162" sboTerm="SBO:0000176" id="MAR03162" name="Beta-Glucuronidase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03162" sboTerm="SBO:0000176" id="R_MAR03162" name="Beta-Glucuronidase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -393262,7 +393160,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03162">
+            <rdf:Description rdf:about="#R_MAR03162">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.2.1.31"/>
@@ -393275,19 +393173,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01924e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01924e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01973e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01923e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01973e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01923e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG9701"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03165" sboTerm="SBO:0000176" id="MAR03165" name="Beta-Glucuronidase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03165" sboTerm="SBO:0000176" id="R_MAR03165" name="Beta-Glucuronidase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -393296,7 +393194,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03165">
+            <rdf:Description rdf:about="#R_MAR03165">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.2.1.31"/>
@@ -393309,19 +393207,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01924l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01924l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01973l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01923l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01973l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01923l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG15117"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03167" sboTerm="SBO:0000176" id="MAR03167" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03167" sboTerm="SBO:0000176" id="R_MAR03167" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -393330,7 +393228,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03167">
+            <rdf:Description rdf:about="#R_MAR03167">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.5.1.18"/>
@@ -393341,14 +393239,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03120c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03120c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03119c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03119c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03168" sboTerm="SBO:0000176" id="MAR03168" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03168" sboTerm="SBO:0000176" id="R_MAR03168" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -393357,7 +393255,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03168">
+            <rdf:Description rdf:about="#R_MAR03168">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.4.15.1"/>
@@ -393368,15 +393266,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02460c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02460c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02459c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02459c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03169" sboTerm="SBO:0000176" id="MAR03169" name="Glucuronosyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03169" sboTerm="SBO:0000176" id="R_MAR03169" name="Glucuronosyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -393385,7 +393283,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03169">
+            <rdf:Description rdf:about="#R_MAR03169">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.17"/>
@@ -393396,13 +393294,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03109c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03335c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03109c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03335c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03336c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03336c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -393411,7 +393309,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03207" sboTerm="SBO:0000176" id="MAR03207" name="Glucuronosyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03207" sboTerm="SBO:0000176" id="R_MAR03207" name="Glucuronosyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -393420,7 +393318,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03207">
+            <rdf:Description rdf:about="#R_MAR03207">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.17"/>
@@ -393433,13 +393331,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03109r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03335r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03109r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03335r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03336r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03336r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -393459,7 +393357,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03209" sboTerm="SBO:0000176" id="MAR03209" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03209" sboTerm="SBO:0000176" id="R_MAR03209" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -393468,7 +393366,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03209">
+            <rdf:Description rdf:about="#R_MAR03209">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.13.67"/>
@@ -393480,13 +393378,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01090m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01090m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00751m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00751m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -393495,7 +393393,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03210" sboTerm="SBO:0000176" id="MAR03210" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03210" sboTerm="SBO:0000176" id="R_MAR03210" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -393504,7 +393402,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03210">
+            <rdf:Description rdf:about="#R_MAR03210">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/RE2626C"/>
@@ -393516,17 +393414,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00751c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00752c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00752c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03214" sboTerm="SBO:0000176" id="MAR03214" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03214" sboTerm="SBO:0000176" id="R_MAR03214" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -393535,7 +393433,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03214">
+            <rdf:Description rdf:about="#R_MAR03214">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/RE2626M"/>
@@ -393546,14 +393444,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00751m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00751m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00752m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02555m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00752m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02555m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -393562,7 +393460,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03216" sboTerm="SBO:0000176" id="MAR03216" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03216" sboTerm="SBO:0000176" id="R_MAR03216" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -393571,7 +393469,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03216">
+            <rdf:Description rdf:about="#R_MAR03216">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.1.1.13"/>
@@ -393584,18 +393482,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01448c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01448c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="2" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040c" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM00761c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM00761c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03217" sboTerm="SBO:0000176" id="MAR03217" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03217" sboTerm="SBO:0000176" id="R_MAR03217" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -393604,7 +393502,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03217">
+            <rdf:Description rdf:about="#R_MAR03217">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.11.1.7"/>
@@ -393617,16 +393515,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01087c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01087c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00747c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00747c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03238" sboTerm="SBO:0000176" id="MAR03238" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03238" sboTerm="SBO:0000176" id="R_MAR03238" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -393635,7 +393533,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03238">
+            <rdf:Description rdf:about="#R_MAR03238">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/RE2675C"/>
@@ -393647,18 +393545,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01699c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01699c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01430c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02552c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01430c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02552c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03248" sboTerm="SBO:0000176" id="MAR03248" name="N-Acylsphingosine Galactosyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03248" sboTerm="SBO:0000176" id="R_MAR03248" name="N-Acylsphingosine Galactosyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -393667,7 +393565,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03248">
+            <rdf:Description rdf:about="#R_MAR03248">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.47"/>
@@ -393680,16 +393578,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03107e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01430e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03107e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01430e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01679e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01679e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03249" sboTerm="SBO:0000176" id="MAR03249" name="N-Acylsphingosine Galactosyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03249" sboTerm="SBO:0000176" id="R_MAR03249" name="N-Acylsphingosine Galactosyltransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -393698,7 +393596,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03249">
+            <rdf:Description rdf:about="#R_MAR03249">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.47"/>
@@ -393711,16 +393609,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03107n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01430n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03107n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01430n" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01679n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01679n" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03255" sboTerm="SBO:0000176" id="MAR03255" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03255" sboTerm="SBO:0000176" id="R_MAR03255" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -393729,7 +393627,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03255">
+            <rdf:Description rdf:about="#R_MAR03255">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/RE2746C"/>
@@ -393739,14 +393637,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02459c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02459c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01625c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01625c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03259" sboTerm="SBO:0000176" id="MAR03259" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03259" sboTerm="SBO:0000176" id="R_MAR03259" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -393755,7 +393653,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03259">
+            <rdf:Description rdf:about="#R_MAR03259">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.5.1.14"/>
@@ -393768,16 +393666,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00623m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00623m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01182m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01182m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03261" sboTerm="SBO:0000176" id="MAR03261" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03261" sboTerm="SBO:0000176" id="R_MAR03261" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -393786,7 +393684,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03261">
+            <rdf:Description rdf:about="#R_MAR03261">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/RE2852C"/>
@@ -393796,16 +393694,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01689c" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="5" constant="true"/>
-          <speciesReference species="MAM02631c" stoichiometry="5" constant="true"/>
+          <speciesReference species="M_MAM01689c" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="5" constant="true"/>
+          <speciesReference species="M_MAM02631c" stoichiometry="5" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00275c" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM00275c" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="4" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03263" sboTerm="SBO:0000176" id="MAR03263" name="Peroxidase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03263" sboTerm="SBO:0000176" id="R_MAR03263" name="Peroxidase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -393814,7 +393712,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03263">
+            <rdf:Description rdf:about="#R_MAR03263">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.11.1.7"/>
@@ -393827,19 +393725,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02041n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03120n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03120n" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039n" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03121n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01315n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039n" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03121n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01315n" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Pxn"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03265" sboTerm="SBO:0000176" id="MAR03265" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03265" sboTerm="SBO:0000176" id="R_MAR03265" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -393848,7 +393746,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03265">
+            <rdf:Description rdf:about="#R_MAR03265">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.188"/>
@@ -393860,14 +393758,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02489c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02489c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01655c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01655c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03266" sboTerm="SBO:0000176" id="MAR03266" name="3-Hydroxyacyl Coenzyme A Dehydrogenase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03266" sboTerm="SBO:0000176" id="R_MAR03266" name="3-Hydroxyacyl Coenzyme A Dehydrogenase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -393876,7 +393774,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03266">
+            <rdf:Description rdf:about="#R_MAR03266">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.35"/>
@@ -393889,16 +393787,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02552c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00177c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00177c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00894c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00894c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03267" sboTerm="SBO:0000176" id="MAR03267" name="3-Hydroxyacyl Coenzyme A Dehydrogenase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03267" sboTerm="SBO:0000176" id="R_MAR03267" name="3-Hydroxyacyl Coenzyme A Dehydrogenase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -393907,7 +393805,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03267">
+            <rdf:Description rdf:about="#R_MAR03267">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.35"/>
@@ -393920,16 +393818,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02552c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01574c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01574c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00886c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00886c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03268" sboTerm="SBO:0000176" id="MAR03268" name="3-Hydroxyacyl Coenzyme A Dehydrogenase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03268" sboTerm="SBO:0000176" id="R_MAR03268" name="3-Hydroxyacyl Coenzyme A Dehydrogenase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -393938,7 +393836,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03268">
+            <rdf:Description rdf:about="#R_MAR03268">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.35"/>
@@ -393951,16 +393849,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02552c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03334c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03334c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03326c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03326c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03269" sboTerm="SBO:0000176" id="MAR03269" name="3-Hydroxyacyl Coenzyme A Dehydrogenase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03269" sboTerm="SBO:0000176" id="R_MAR03269" name="3-Hydroxyacyl Coenzyme A Dehydrogenase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -393969,7 +393867,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03269">
+            <rdf:Description rdf:about="#R_MAR03269">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.35"/>
@@ -393980,16 +393878,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02552m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03334m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03334m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03326m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03326m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03270" sboTerm="SBO:0000176" id="MAR03270" name="3-Hydroxyacyl Coenzyme A Dehydrogenase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03270" sboTerm="SBO:0000176" id="R_MAR03270" name="3-Hydroxyacyl Coenzyme A Dehydrogenase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -393998,7 +393896,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03270">
+            <rdf:Description rdf:about="#R_MAR03270">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.35"/>
@@ -394009,19 +393907,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02552x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03334x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03334x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03326x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03326x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Mfe2"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03271" sboTerm="SBO:0000176" id="MAR03271" name="Alcohol Dehydrogenase (NADP+)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03271" sboTerm="SBO:0000176" id="R_MAR03271" name="Alcohol Dehydrogenase (NADP+)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -394030,7 +393928,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03271">
+            <rdf:Description rdf:about="#R_MAR03271">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.2"/>
@@ -394041,19 +393939,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03319c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03319c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03419c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03419c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG2767"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03273" sboTerm="SBO:0000176" id="MAR03273" name="Long-Chain-Fatty-Acid- Coenzyme A Ligase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03273" sboTerm="SBO:0000176" id="R_MAR03273" name="Long-Chain-Fatty-Acid- Coenzyme A Ligase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -394062,7 +393960,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03273">
+            <rdf:Description rdf:about="#R_MAR03273">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.3"/>
@@ -394074,14 +393972,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02675m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02675m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01334m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02677m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02677m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -394090,7 +393988,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03274" sboTerm="SBO:0000176" id="MAR03274" name="Long-Chain-Fatty-Acid- Coenzyme A Ligase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03274" sboTerm="SBO:0000176" id="R_MAR03274" name="Long-Chain-Fatty-Acid- Coenzyme A Ligase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -394099,7 +393997,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03274">
+            <rdf:Description rdf:about="#R_MAR03274">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.3"/>
@@ -394110,14 +394008,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02675x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02675x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01334x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02677x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02677x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -394127,7 +394025,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03276" sboTerm="SBO:0000176" id="MAR03276" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03276" sboTerm="SBO:0000176" id="R_MAR03276" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -394136,7 +394034,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03276">
+            <rdf:Description rdf:about="#R_MAR03276">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.99.3"/>
@@ -394147,12 +394045,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01802x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02677x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01802x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02677x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01803x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03020x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01803x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03020x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -394161,7 +394059,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03289" sboTerm="SBO:0000176" id="MAR03289" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03289" sboTerm="SBO:0000176" id="R_MAR03289" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -394170,7 +394068,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03289">
+            <rdf:Description rdf:about="#R_MAR03289">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.99.3"/>
@@ -394181,12 +394079,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00118x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01802x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00118x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01802x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01803x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03023x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01803x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03023x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -394195,7 +394093,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03291" sboTerm="SBO:0000176" id="MAR03291" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03291" sboTerm="SBO:0000176" id="R_MAR03291" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -394204,7 +394102,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03291">
+            <rdf:Description rdf:about="#R_MAR03291">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.99.3"/>
@@ -394215,12 +394113,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01803m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03333m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01803m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03333m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00099m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01802m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00099m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01802m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -394230,7 +394128,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03295" sboTerm="SBO:0000176" id="MAR03295" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03295" sboTerm="SBO:0000176" id="R_MAR03295" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -394239,7 +394137,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03295">
+            <rdf:Description rdf:about="#R_MAR03295">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.99.3"/>
@@ -394250,12 +394148,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01803x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03333x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01803x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03333x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00099x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01802x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00099x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01802x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -394264,7 +394162,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03297" sboTerm="SBO:0000176" id="MAR03297" name="Enoyl Coenzyme A Hydratase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03297" sboTerm="SBO:0000176" id="R_MAR03297" name="Enoyl Coenzyme A Hydratase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -394273,7 +394171,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03297">
+            <rdf:Description rdf:about="#R_MAR03297">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.17"/>
@@ -394284,14 +394182,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03333m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03333m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03334m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03334m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03300" sboTerm="SBO:0000176" id="MAR03300" name="1-Phosphatidylinositol 4-Kinase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03300" sboTerm="SBO:0000176" id="R_MAR03300" name="1-Phosphatidylinositol 4-Kinase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -394300,7 +394198,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03300">
+            <rdf:Description rdf:about="#R_MAR03300">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.1.67"/>
@@ -394313,16 +394211,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00554g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00554g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02736g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02736g" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03303" sboTerm="SBO:0000176" id="MAR03303" name="1-Phosphatidylinositol 4-Kinase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03303" sboTerm="SBO:0000176" id="R_MAR03303" name="1-Phosphatidylinositol 4-Kinase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -394331,7 +394229,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03303">
+            <rdf:Description rdf:about="#R_MAR03303">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.1.67"/>
@@ -394344,16 +394242,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00554m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00554m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02736m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02736m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03308" sboTerm="SBO:0000176" id="MAR03308" name="Phosphatidylinositol 3-Kinase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03308" sboTerm="SBO:0000176" id="R_MAR03308" name="Phosphatidylinositol 3-Kinase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -394362,7 +394260,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03308">
+            <rdf:Description rdf:about="#R_MAR03308">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.1.137"/>
@@ -394375,16 +394273,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00554r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00554r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02736r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02736r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03313" sboTerm="SBO:0000176" id="MAR03313" name="Phosphatidylinositol 3-Kinase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03313" sboTerm="SBO:0000176" id="R_MAR03313" name="Phosphatidylinositol 3-Kinase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -394393,7 +394291,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03313">
+            <rdf:Description rdf:about="#R_MAR03313">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.1.137"/>
@@ -394406,19 +394304,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00554n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00554n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371n" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02735n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02735n" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Pi3K68D"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03318" sboTerm="SBO:0000176" id="MAR03318" name="1-Phosphatidylinositol-4-Phosphate 5-Kinase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03318" sboTerm="SBO:0000176" id="R_MAR03318" name="1-Phosphatidylinositol-4-Phosphate 5-Kinase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -394427,7 +394325,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03318">
+            <rdf:Description rdf:about="#R_MAR03318">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.1.68"/>
@@ -394440,19 +394338,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00552g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00552g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02735g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02735g" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="PIP5K59B"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03324" sboTerm="SBO:0000176" id="MAR03324" name="1-Phosphatidylinositol-4-Phosphate 5-Kinase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03324" sboTerm="SBO:0000176" id="R_MAR03324" name="1-Phosphatidylinositol-4-Phosphate 5-Kinase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -394461,7 +394359,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03324">
+            <rdf:Description rdf:about="#R_MAR03324">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.1.68"/>
@@ -394474,16 +394372,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00552n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00552n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371n" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02735n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02735n" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03325" sboTerm="SBO:0000176" id="MAR03325" name="1-Phosphatidylinositol-4-Phosphate 5-Kinase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03325" sboTerm="SBO:0000176" id="R_MAR03325" name="1-Phosphatidylinositol-4-Phosphate 5-Kinase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -394492,7 +394390,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03325">
+            <rdf:Description rdf:about="#R_MAR03325">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.1.68"/>
@@ -394505,19 +394403,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00552r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00552r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02735r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02735r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="PIP4K"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03354" sboTerm="SBO:0000176" id="MAR03354" name="Alcohol Dehydrogenase (NADP+)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03354" sboTerm="SBO:0000176" id="R_MAR03354" name="Alcohol Dehydrogenase (NADP+)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -394526,7 +394424,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03354">
+            <rdf:Description rdf:about="#R_MAR03354">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.2"/>
@@ -394537,19 +394435,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01311c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01311c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03320c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03320c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG2767"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03366" sboTerm="SBO:0000176" id="MAR03366" name="Acyl Coenzyme A Oxidase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03366" sboTerm="SBO:0000176" id="R_MAR03366" name="Acyl Coenzyme A Oxidase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -394558,7 +394456,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03366">
+            <rdf:Description rdf:about="#R_MAR03366">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.3.6"/>
@@ -394570,18 +394468,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01364m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01364m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00682m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02041m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00682m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="ACOX1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03371" sboTerm="SBO:0000176" id="MAR03371" name="Acyl Coenzyme A Oxidase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03371" sboTerm="SBO:0000176" id="R_MAR03371" name="Acyl Coenzyme A Oxidase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -394590,7 +394488,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03371">
+            <rdf:Description rdf:about="#R_MAR03371">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.3.6"/>
@@ -394602,18 +394500,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01576m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01576m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02041m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03030m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03030m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="ACOX1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03374" sboTerm="SBO:0000176" id="MAR03374" name="Dodecenoyl Coenzyme A Isomerase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03374" sboTerm="SBO:0000176" id="R_MAR03374" name="Dodecenoyl Coenzyme A Isomerase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -394622,7 +394520,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03374">
+            <rdf:Description rdf:about="#R_MAR03374">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/5.3.3.8"/>
@@ -394634,10 +394532,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03030m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03030m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03358m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03358m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -394646,7 +394544,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03376" sboTerm="SBO:0000176" id="MAR03376" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03376" sboTerm="SBO:0000176" id="R_MAR03376" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -394655,7 +394553,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03376">
+            <rdf:Description rdf:about="#R_MAR03376">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.16"/>
@@ -394667,16 +394565,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03358m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03358m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03359m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03359m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Ech1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03378" sboTerm="SBO:0000176" id="MAR03378" name="Dodecenoyl Coenzyme A Isomerase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03378" sboTerm="SBO:0000176" id="R_MAR03378" name="Dodecenoyl Coenzyme A Isomerase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -394685,7 +394583,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03378">
+            <rdf:Description rdf:about="#R_MAR03378">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/5.3.3.8"/>
@@ -394697,10 +394595,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03361m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03361m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03360m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03360m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -394709,7 +394607,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03379" sboTerm="SBO:0000176" id="MAR03379" name="Enoyl Coenzyme A Hydratase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03379" sboTerm="SBO:0000176" id="R_MAR03379" name="Enoyl Coenzyme A Hydratase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -394718,7 +394616,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03379">
+            <rdf:Description rdf:about="#R_MAR03379">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.17"/>
@@ -394730,14 +394628,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03361m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03361m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03350m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03350m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03380" sboTerm="SBO:0000176" id="MAR03380" name="3-Hydroxyacyl Coenzyme A Dehydrogenase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03380" sboTerm="SBO:0000176" id="R_MAR03380" name="3-Hydroxyacyl Coenzyme A Dehydrogenase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -394746,7 +394644,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03380">
+            <rdf:Description rdf:about="#R_MAR03380">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.35"/>
@@ -394758,13 +394656,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02552m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03350m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03350m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03351m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03351m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -394773,7 +394671,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03381" sboTerm="SBO:0000176" id="MAR03381" name="Acetyl Coenzyme A C-Acyltransferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03381" sboTerm="SBO:0000176" id="R_MAR03381" name="Acetyl Coenzyme A C-Acyltransferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -394782,7 +394680,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03381">
+            <rdf:Description rdf:about="#R_MAR03381">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.16"/>
@@ -394794,15 +394692,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03351m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03351m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03352m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03352m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03382" sboTerm="SBO:0000176" id="MAR03382" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03382" sboTerm="SBO:0000176" id="R_MAR03382" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -394811,7 +394709,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03382">
+            <rdf:Description rdf:about="#R_MAR03382">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/RE3039C"/>
@@ -394821,15 +394719,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01261c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03320c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03320c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03317c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03317c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03383" sboTerm="SBO:0000176" id="MAR03383" name="Alkylacetylglycerophosphatase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03383" sboTerm="SBO:0000176" id="R_MAR03383" name="Alkylacetylglycerophosphatase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -394838,7 +394736,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03383">
+            <rdf:Description rdf:about="#R_MAR03383">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.3.59"/>
@@ -394849,15 +394747,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03317c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03317c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00513c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00513c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03385" sboTerm="SBO:0000176" id="MAR03385" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03385" sboTerm="SBO:0000176" id="R_MAR03385" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -394866,7 +394764,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03385">
+            <rdf:Description rdf:about="#R_MAR03385">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.2.1.3"/>
@@ -394877,17 +394775,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03363x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03363x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00564x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01836x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00564x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01836x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Hacl"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03386" sboTerm="SBO:0000176" id="MAR03386" name="Long-Chain-Aldehyde Dehydrogenase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03386" sboTerm="SBO:0000176" id="R_MAR03386" name="Long-Chain-Aldehyde Dehydrogenase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -394896,7 +394794,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03386">
+            <rdf:Description rdf:about="#R_MAR03386">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.2.1.48"/>
@@ -394909,17 +394807,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00564x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00564x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039x" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02553x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02766x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039x" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02553x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02766x" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03387" sboTerm="SBO:0000176" id="MAR03387" name="Long-Chain-Fatty-Acid- Coenzyme A Ligase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03387" sboTerm="SBO:0000176" id="R_MAR03387" name="Long-Chain-Fatty-Acid- Coenzyme A Ligase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -394928,7 +394826,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03387">
+            <rdf:Description rdf:about="#R_MAR03387">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.3"/>
@@ -394940,14 +394838,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02766x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02766x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00078x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01334x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00078x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -394957,7 +394855,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03388" sboTerm="SBO:0000176" id="MAR03388" name="Phytanate- Coenzyme A Ligase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03388" sboTerm="SBO:0000176" id="R_MAR03388" name="Phytanate- Coenzyme A Ligase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -394966,7 +394864,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03388">
+            <rdf:Description rdf:about="#R_MAR03388">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.24"/>
@@ -394979,17 +394877,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02746c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02746c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01334c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03362c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03362c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03389" sboTerm="SBO:0000176" id="MAR03389" name="Phytanate- Coenzyme A Ligase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03389" sboTerm="SBO:0000176" id="R_MAR03389" name="Phytanate- Coenzyme A Ligase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -394998,7 +394896,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03389">
+            <rdf:Description rdf:about="#R_MAR03389">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.24"/>
@@ -395009,20 +394907,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02746x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02746x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01334x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03362x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03362x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Fatp1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03390" sboTerm="SBO:0000176" id="MAR03390" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03390" sboTerm="SBO:0000176" id="R_MAR03390" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -395031,7 +394929,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03390">
+            <rdf:Description rdf:about="#R_MAR03390">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.13.30"/>
@@ -395044,17 +394942,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02766c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02766c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01334c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00075c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00075c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03391" sboTerm="SBO:0000176" id="MAR03391" name="Peroxidase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03391" sboTerm="SBO:0000176" id="R_MAR03391" name="Peroxidase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -395063,7 +394961,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03391">
+            <rdf:Description rdf:about="#R_MAR03391">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.11.1.7"/>
@@ -395076,12 +394974,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02041l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01736l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01736l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040l" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM01738l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01738l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -395090,7 +394988,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03392" sboTerm="SBO:0000176" id="MAR03392" name="Peroxidase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03392" sboTerm="SBO:0000176" id="R_MAR03392" name="Peroxidase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -395099,7 +394997,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03392">
+            <rdf:Description rdf:about="#R_MAR03392">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.11.1.7"/>
@@ -395112,15 +395010,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02041x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01736x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01736x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040x" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM01738x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040x" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01738x" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03393" sboTerm="SBO:0000176" id="MAR03393" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03393" sboTerm="SBO:0000176" id="R_MAR03393" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -395129,7 +395027,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03393">
+            <rdf:Description rdf:about="#R_MAR03393">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.3.2.9"/>
@@ -395140,17 +395038,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01934r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02444r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01934r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02444r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01596r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00859r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01596r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00859r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03394" sboTerm="SBO:0000176" id="MAR03394" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03394" sboTerm="SBO:0000176" id="R_MAR03394" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -395159,7 +395057,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03394">
+            <rdf:Description rdf:about="#R_MAR03394">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.3.2.9"/>
@@ -395172,13 +395070,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03029r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03029r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01697r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01697r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -395187,7 +395085,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03395" sboTerm="SBO:0000176" id="MAR03395" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03395" sboTerm="SBO:0000176" id="R_MAR03395" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -395196,7 +395094,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03395">
+            <rdf:Description rdf:about="#R_MAR03395">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/RE3106R"/>
@@ -395206,13 +395104,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01769r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01769r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00125r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00125r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -395221,7 +395119,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03399" sboTerm="SBO:0000176" id="MAR03399" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03399" sboTerm="SBO:0000176" id="R_MAR03399" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -395230,7 +395128,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03399">
+            <rdf:Description rdf:about="#R_MAR03399">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.3.2.9"/>
@@ -395241,17 +395139,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00108r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02444r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00108r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02444r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01596r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00811r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01596r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00811r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03400" sboTerm="SBO:0000176" id="MAR03400" name="3Beta-Hydroxy-Delta5-Steroid Dehydrogenase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03400" sboTerm="SBO:0000176" id="R_MAR03400" name="3Beta-Hydroxy-Delta5-Steroid Dehydrogenase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -395260,7 +395158,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03400">
+            <rdf:Description rdf:about="#R_MAR03400">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.145"/>
@@ -395273,19 +395171,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01336m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01336m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02553m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01069m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01069m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG7724"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03401" sboTerm="SBO:0000176" id="MAR03401" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03401" sboTerm="SBO:0000176" id="R_MAR03401" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -395294,7 +395192,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03401">
+            <rdf:Description rdf:about="#R_MAR03401">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.3.59"/>
@@ -395305,13 +395203,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00811r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00811r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02554r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00708r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00708r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -395320,7 +395218,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03402" sboTerm="SBO:0000176" id="MAR03402" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03402" sboTerm="SBO:0000176" id="R_MAR03402" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -395329,7 +395227,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03402">
+            <rdf:Description rdf:about="#R_MAR03402">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/RE3113R"/>
@@ -395339,11 +395237,11 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00708r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00708r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01769r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01769r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -395352,7 +395250,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03403" sboTerm="SBO:0000176" id="MAR03403" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03403" sboTerm="SBO:0000176" id="R_MAR03403" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -395361,7 +395259,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03403">
+            <rdf:Description rdf:about="#R_MAR03403">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.11.18"/>
@@ -395372,13 +395270,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00679r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00679r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00121r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00121r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -395387,7 +395285,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03404" sboTerm="SBO:0000176" id="MAR03404" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03404" sboTerm="SBO:0000176" id="R_MAR03404" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -395396,7 +395294,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03404">
+            <rdf:Description rdf:about="#R_MAR03404">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.2.1.48"/>
@@ -395407,17 +395305,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00103r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02444r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00103r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02444r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01596r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00863r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01596r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00863r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03405" sboTerm="SBO:0000176" id="MAR03405" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03405" sboTerm="SBO:0000176" id="R_MAR03405" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -395426,7 +395324,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03405">
+            <rdf:Description rdf:about="#R_MAR03405">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.24"/>
@@ -395437,13 +395335,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00863r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00863r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02554r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00713r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00713r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -395452,7 +395350,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03410" sboTerm="SBO:0000176" id="MAR03410" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03410" sboTerm="SBO:0000176" id="R_MAR03410" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -395461,7 +395359,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03410">
+            <rdf:Description rdf:about="#R_MAR03410">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.2.1.48"/>
@@ -395472,11 +395370,11 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00713r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00713r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00679r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00679r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -395485,7 +395383,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03412" sboTerm="SBO:0000176" id="MAR03412" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03412" sboTerm="SBO:0000176" id="R_MAR03412" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -395494,7 +395392,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03412">
+            <rdf:Description rdf:about="#R_MAR03412">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/RE3123R"/>
@@ -395504,13 +395402,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00680r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00680r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02554r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03353r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03353r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -395519,7 +395417,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03415" sboTerm="SBO:0000176" id="MAR03415" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03415" sboTerm="SBO:0000176" id="R_MAR03415" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -395528,7 +395426,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03415">
+            <rdf:Description rdf:about="#R_MAR03415">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.35"/>
@@ -395539,17 +395437,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00121r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02444r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00121r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02444r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01596r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00853r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01596r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00853r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03417" sboTerm="SBO:0000176" id="MAR03417" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03417" sboTerm="SBO:0000176" id="R_MAR03417" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -395558,7 +395456,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03417">
+            <rdf:Description rdf:about="#R_MAR03417">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.3.6"/>
@@ -395569,13 +395467,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00853r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00853r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02554r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00718r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00718r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -395584,7 +395482,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03418" sboTerm="SBO:0000176" id="MAR03418" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03418" sboTerm="SBO:0000176" id="R_MAR03418" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -395593,7 +395491,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03418">
+            <rdf:Description rdf:about="#R_MAR03418">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.17"/>
@@ -395604,11 +395502,11 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00718r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00718r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00680r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00680r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -395617,7 +395515,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03419" sboTerm="SBO:0000176" id="MAR03419" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03419" sboTerm="SBO:0000176" id="R_MAR03419" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -395626,7 +395524,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03419">
+            <rdf:Description rdf:about="#R_MAR03419">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.35"/>
@@ -395637,16 +395535,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01675n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01675n" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02554n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01450n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450n" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03420" sboTerm="SBO:0000176" id="MAR03420" name="Delta14-Sterol Reductase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03420" sboTerm="SBO:0000176" id="R_MAR03420" name="Delta14-Sterol Reductase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -395655,7 +395553,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03420">
+            <rdf:Description rdf:about="#R_MAR03420">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.1.70"/>
@@ -395667,19 +395565,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03331c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03331c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00943c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00943c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="LBR"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03434" sboTerm="SBO:0000176" id="MAR03434" name="Delta14-Sterol Reductase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03434" sboTerm="SBO:0000176" id="R_MAR03434" name="Delta14-Sterol Reductase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -395688,7 +395586,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03434">
+            <rdf:Description rdf:about="#R_MAR03434">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.1.70"/>
@@ -395701,19 +395599,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03331r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03331r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02554r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00943r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00943r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="LBR"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03435" sboTerm="SBO:0000176" id="MAR03435" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03435" sboTerm="SBO:0000176" id="R_MAR03435" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -395722,7 +395620,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03435">
+            <rdf:Description rdf:about="#R_MAR03435">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.16"/>
@@ -395735,17 +395633,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03377c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03377c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01418c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01418c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03436" sboTerm="SBO:0000176" id="MAR03436" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03436" sboTerm="SBO:0000176" id="R_MAR03436" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -395754,7 +395652,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03436">
+            <rdf:Description rdf:about="#R_MAR03436">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/RE3144M"/>
@@ -395766,14 +395664,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02555m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03377m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03377m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01418m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01418m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -395782,7 +395680,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03437" sboTerm="SBO:0000176" id="MAR03437" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03437" sboTerm="SBO:0000176" id="R_MAR03437" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -395791,7 +395689,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03437">
+            <rdf:Description rdf:about="#R_MAR03437">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/RE3147C"/>
@@ -395801,16 +395699,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00095c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00095c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00119c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00119c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03438" sboTerm="SBO:0000176" id="MAR03438" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03438" sboTerm="SBO:0000176" id="R_MAR03438" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -395819,7 +395717,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03438">
+            <rdf:Description rdf:about="#R_MAR03438">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/RE3147R"/>
@@ -395829,13 +395727,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00095r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039r" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM02555r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00095r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM02555r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00119r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00119r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -395844,7 +395742,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03439" sboTerm="SBO:0000176" id="MAR03439" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03439" sboTerm="SBO:0000176" id="R_MAR03439" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -395853,7 +395751,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03439">
+            <rdf:Description rdf:about="#R_MAR03439">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/RE3148C"/>
@@ -395863,17 +395761,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00119c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02444c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00119c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02444c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00902c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01596c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00902c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01596c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03440" sboTerm="SBO:0000176" id="MAR03440" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03440" sboTerm="SBO:0000176" id="R_MAR03440" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -395882,7 +395780,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03440">
+            <rdf:Description rdf:about="#R_MAR03440">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.50"/>
@@ -395893,17 +395791,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00119r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02444r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00119r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02444r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01596r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00853r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01596r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00853r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03441" sboTerm="SBO:0000176" id="MAR03441" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03441" sboTerm="SBO:0000176" id="R_MAR03441" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -395912,7 +395810,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03441">
+            <rdf:Description rdf:about="#R_MAR03441">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/RE3150C"/>
@@ -395924,16 +395822,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00681c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00681c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03354c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03354c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03442" sboTerm="SBO:0000176" id="MAR03442" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03442" sboTerm="SBO:0000176" id="R_MAR03442" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -395942,7 +395840,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03442">
+            <rdf:Description rdf:about="#R_MAR03442">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/RE3150R"/>
@@ -395954,13 +395852,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00681r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00681r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02554r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03354r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03354r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -395969,7 +395867,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03443" sboTerm="SBO:0000176" id="MAR03443" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03443" sboTerm="SBO:0000176" id="R_MAR03443" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -395978,7 +395876,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03443">
+            <rdf:Description rdf:about="#R_MAR03443">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.145"/>
@@ -395989,17 +395887,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01364r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02444r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01364r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02444r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01596r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00864r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01596r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00864r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03451" sboTerm="SBO:0000176" id="MAR03451" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03451" sboTerm="SBO:0000176" id="R_MAR03451" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -396008,7 +395906,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03451">
+            <rdf:Description rdf:about="#R_MAR03451">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/RE3152R"/>
@@ -396018,13 +395916,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00864r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00864r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02554r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00714r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00714r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -396033,7 +395931,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03465" sboTerm="SBO:0000176" id="MAR03465" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03465" sboTerm="SBO:0000176" id="R_MAR03465" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -396042,7 +395940,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03465">
+            <rdf:Description rdf:about="#R_MAR03465">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/RE3153R"/>
@@ -396052,11 +395950,11 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00714r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00714r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00074r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00074r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -396065,7 +395963,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03474" sboTerm="SBO:0000176" id="MAR03474" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03474" sboTerm="SBO:0000176" id="R_MAR03474" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -396074,7 +395972,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03474">
+            <rdf:Description rdf:about="#R_MAR03474">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.3"/>
@@ -396087,13 +395985,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00903r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00903r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02554r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00716r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00716r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -396102,7 +396000,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03479" sboTerm="SBO:0000176" id="MAR03479" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03479" sboTerm="SBO:0000176" id="R_MAR03479" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -396111,7 +396009,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03479">
+            <rdf:Description rdf:about="#R_MAR03479">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/RE3155R"/>
@@ -396123,11 +396021,11 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00716r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00716r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00681r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00681r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -396136,7 +396034,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03485" sboTerm="SBO:0000176" id="MAR03485" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03485" sboTerm="SBO:0000176" id="R_MAR03485" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -396145,7 +396043,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03485">
+            <rdf:Description rdf:about="#R_MAR03485">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/RE3161R"/>
@@ -396155,17 +396053,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02391r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02444r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02391r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02444r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01596r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00870r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01596r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00870r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03487" sboTerm="SBO:0000176" id="MAR03487" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03487" sboTerm="SBO:0000176" id="R_MAR03487" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -396174,7 +396072,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03487">
+            <rdf:Description rdf:about="#R_MAR03487">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/RE3162R"/>
@@ -396184,13 +396082,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00870r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00870r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02554r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00087r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00087r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -396199,7 +396097,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03490" sboTerm="SBO:0000176" id="MAR03490" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03490" sboTerm="SBO:0000176" id="R_MAR03490" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -396208,7 +396106,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03490">
+            <rdf:Description rdf:about="#R_MAR03490">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/RE3163R"/>
@@ -396218,11 +396116,11 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00087r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00087r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03007r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03007r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -396231,7 +396129,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03492" sboTerm="SBO:0000176" id="MAR03492" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03492" sboTerm="SBO:0000176" id="R_MAR03492" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -396240,7 +396138,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03492">
+            <rdf:Description rdf:about="#R_MAR03492">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/RE3164R"/>
@@ -396250,13 +396148,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03007r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03007r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00009r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00009r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -396265,7 +396163,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03494" sboTerm="SBO:0000176" id="MAR03494" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03494" sboTerm="SBO:0000176" id="R_MAR03494" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -396274,7 +396172,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03494">
+            <rdf:Description rdf:about="#R_MAR03494">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/RE3165R"/>
@@ -396284,17 +396182,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01697r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02444r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01697r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02444r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01596r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00865r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01596r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00865r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03495" sboTerm="SBO:0000176" id="MAR03495" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03495" sboTerm="SBO:0000176" id="R_MAR03495" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -396303,7 +396201,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03495">
+            <rdf:Description rdf:about="#R_MAR03495">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.3"/>
@@ -396314,13 +396212,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00865r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00865r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02554r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00698r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00698r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -396329,7 +396227,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03496" sboTerm="SBO:0000176" id="MAR03496" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03496" sboTerm="SBO:0000176" id="R_MAR03496" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -396338,7 +396236,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03496">
+            <rdf:Description rdf:about="#R_MAR03496">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.1.70"/>
@@ -396349,11 +396247,11 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00698r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00698r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03004r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03004r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -396362,7 +396260,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03497" sboTerm="SBO:0000176" id="MAR03497" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03497" sboTerm="SBO:0000176" id="R_MAR03497" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -396371,7 +396269,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03497">
+            <rdf:Description rdf:about="#R_MAR03497">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.16"/>
@@ -396382,13 +396280,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03004r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03004r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00264r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00264r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -396397,7 +396295,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03499" sboTerm="SBO:0000176" id="MAR03499" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03499" sboTerm="SBO:0000176" id="R_MAR03499" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -396406,7 +396304,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03499">
+            <rdf:Description rdf:about="#R_MAR03499">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.35"/>
@@ -396417,13 +396315,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03002r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03002r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00262r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00262r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -396432,7 +396330,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03500" sboTerm="SBO:0000176" id="MAR03500" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03500" sboTerm="SBO:0000176" id="R_MAR03500" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -396441,7 +396339,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03500">
+            <rdf:Description rdf:about="#R_MAR03500">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/RE3170R"/>
@@ -396451,17 +396349,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00125r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02444r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00125r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02444r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01596r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00861r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01596r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00861r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03502" sboTerm="SBO:0000176" id="MAR03502" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03502" sboTerm="SBO:0000176" id="R_MAR03502" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -396470,7 +396368,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03502">
+            <rdf:Description rdf:about="#R_MAR03502">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.3"/>
@@ -396481,13 +396379,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00861r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00861r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02554r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00711r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00711r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -396496,7 +396394,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03504" sboTerm="SBO:0000176" id="MAR03504" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03504" sboTerm="SBO:0000176" id="R_MAR03504" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -396505,7 +396403,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03504">
+            <rdf:Description rdf:about="#R_MAR03504">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/RE3172R"/>
@@ -396515,11 +396413,11 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00711r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00711r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03002r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03002r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -396528,7 +396426,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03507" sboTerm="SBO:0000176" id="MAR03507" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03507" sboTerm="SBO:0000176" id="R_MAR03507" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -396537,7 +396435,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03507">
+            <rdf:Description rdf:about="#R_MAR03507">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/RE3173R"/>
@@ -396549,13 +396447,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03003r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03003r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00317r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00317r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -396564,7 +396462,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03516" sboTerm="SBO:0000176" id="MAR03516" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03516" sboTerm="SBO:0000176" id="R_MAR03516" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -396573,7 +396471,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03516">
+            <rdf:Description rdf:about="#R_MAR03516">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/RE3174R"/>
@@ -396583,17 +396481,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00262r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02444r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00262r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02444r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01596r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00901r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01596r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00901r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03518" sboTerm="SBO:0000176" id="MAR03518" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03518" sboTerm="SBO:0000176" id="R_MAR03518" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -396602,7 +396500,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03518">
+            <rdf:Description rdf:about="#R_MAR03518">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/RE3175R"/>
@@ -396612,13 +396510,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00901r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00901r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02554r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00716r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00716r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -396627,7 +396525,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03535" sboTerm="SBO:0000176" id="MAR03535" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03535" sboTerm="SBO:0000176" id="R_MAR03535" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -396636,7 +396534,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03535">
+            <rdf:Description rdf:about="#R_MAR03535">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/RE3176R"/>
@@ -396648,11 +396546,11 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00716r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00716r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03003r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03003r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -396661,7 +396559,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03536" sboTerm="SBO:0000176" id="MAR03536" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03536" sboTerm="SBO:0000176" id="R_MAR03536" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -396670,7 +396568,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03536">
+            <rdf:Description rdf:about="#R_MAR03536">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/RE3180C"/>
@@ -396681,16 +396579,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00609c" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM01596c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00609c" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM01596c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03331c" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM03357c" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03331c" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM03357c" stoichiometry="4" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03598" sboTerm="SBO:0000176" id="MAR03598" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03598" sboTerm="SBO:0000176" id="R_MAR03598" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -396699,7 +396597,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03598">
+            <rdf:Description rdf:about="#R_MAR03598">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/RE3181C"/>
@@ -396710,16 +396608,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01596c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02336c" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM01596c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02336c" stoichiometry="3" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00941c" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03357c" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM00941c" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03357c" stoichiometry="4" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03599" sboTerm="SBO:0000176" id="MAR03599" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03599" sboTerm="SBO:0000176" id="R_MAR03599" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -396728,7 +396626,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03599">
+            <rdf:Description rdf:about="#R_MAR03599">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/RE3198C"/>
@@ -396740,16 +396638,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02355c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02355c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00638c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00638c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03604" sboTerm="SBO:0000176" id="MAR03604" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03604" sboTerm="SBO:0000176" id="R_MAR03604" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -396758,7 +396656,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03604">
+            <rdf:Description rdf:about="#R_MAR03604">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/RE3224R"/>
@@ -396770,17 +396668,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02444r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02647r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02444r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02647r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01596r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00840r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01596r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00840r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03605" sboTerm="SBO:0000176" id="MAR03605" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03605" sboTerm="SBO:0000176" id="R_MAR03605" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -396789,7 +396687,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03605">
+            <rdf:Description rdf:about="#R_MAR03605">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/RE3225R"/>
@@ -396801,17 +396699,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00007r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02444r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00007r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02444r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01596r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00842r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01596r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00842r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03606" sboTerm="SBO:0000176" id="MAR03606" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03606" sboTerm="SBO:0000176" id="R_MAR03606" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -396820,7 +396718,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03606">
+            <rdf:Description rdf:about="#R_MAR03606">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/RE3226R"/>
@@ -396832,17 +396730,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00016r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02444r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00016r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02444r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01596r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00856r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01596r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00856r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03607" sboTerm="SBO:0000176" id="MAR03607" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03607" sboTerm="SBO:0000176" id="R_MAR03607" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -396851,7 +396749,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03607">
+            <rdf:Description rdf:about="#R_MAR03607">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/RE3227R"/>
@@ -396863,13 +396761,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00840r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00840r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02554r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00700r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00700r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -396878,7 +396776,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03608" sboTerm="SBO:0000176" id="MAR03608" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03608" sboTerm="SBO:0000176" id="R_MAR03608" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -396887,7 +396785,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03608">
+            <rdf:Description rdf:about="#R_MAR03608">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/RE3228R"/>
@@ -396899,11 +396797,11 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00700r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00700r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03012r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03012r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -396912,7 +396810,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03609" sboTerm="SBO:0000176" id="MAR03609" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03609" sboTerm="SBO:0000176" id="R_MAR03609" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -396921,7 +396819,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03609">
+            <rdf:Description rdf:about="#R_MAR03609">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/RE3229R"/>
@@ -396933,13 +396831,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03012r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03012r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00007r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00007r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -396948,7 +396846,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03610" sboTerm="SBO:0000176" id="MAR03610" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03610" sboTerm="SBO:0000176" id="R_MAR03610" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -396957,7 +396855,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03610">
+            <rdf:Description rdf:about="#R_MAR03610">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/RE3230R"/>
@@ -396969,13 +396867,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00842r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00842r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02554r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00701r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00701r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -396984,7 +396882,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03611" sboTerm="SBO:0000176" id="MAR03611" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03611" sboTerm="SBO:0000176" id="R_MAR03611" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -396993,7 +396891,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03611">
+            <rdf:Description rdf:about="#R_MAR03611">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/RE3231R"/>
@@ -397005,11 +396903,11 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00701r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00701r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03013r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03013r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -397018,7 +396916,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03612" sboTerm="SBO:0000176" id="MAR03612" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03612" sboTerm="SBO:0000176" id="R_MAR03612" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -397027,7 +396925,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03612">
+            <rdf:Description rdf:about="#R_MAR03612">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/RE3232R"/>
@@ -397039,13 +396937,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03013r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03013r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00016r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00016r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -397054,7 +396952,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03615" sboTerm="SBO:0000176" id="MAR03615" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03615" sboTerm="SBO:0000176" id="R_MAR03615" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -397063,7 +396961,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03615">
+            <rdf:Description rdf:about="#R_MAR03615">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.35"/>
@@ -397076,13 +396974,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00856r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00856r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02554r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00709r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00709r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -397091,7 +396989,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03616" sboTerm="SBO:0000176" id="MAR03616" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03616" sboTerm="SBO:0000176" id="R_MAR03616" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -397100,7 +396998,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03616">
+            <rdf:Description rdf:about="#R_MAR03616">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.35"/>
@@ -397113,11 +397011,11 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00709r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00709r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03015r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03015r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -397126,7 +397024,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03617" sboTerm="SBO:0000176" id="MAR03617" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03617" sboTerm="SBO:0000176" id="R_MAR03617" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -397135,7 +397033,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03617">
+            <rdf:Description rdf:about="#R_MAR03617">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/RE3236R"/>
@@ -397147,13 +397045,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03015r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03015r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00025r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00025r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -397162,7 +397060,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03618" sboTerm="SBO:0000176" id="MAR03618" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03618" sboTerm="SBO:0000176" id="R_MAR03618" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -397171,7 +397069,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03618">
+            <rdf:Description rdf:about="#R_MAR03618">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.16"/>
@@ -397184,17 +397082,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02444c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02677c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02444c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02677c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01596c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03364c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01596c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03364c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03619" sboTerm="SBO:0000176" id="MAR03619" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03619" sboTerm="SBO:0000176" id="R_MAR03619" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -397203,7 +397101,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03619">
+            <rdf:Description rdf:about="#R_MAR03619">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.16"/>
@@ -397216,17 +397114,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02444r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02677r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02444r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02677r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01596r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03364r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01596r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03364r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03620" sboTerm="SBO:0000176" id="MAR03620" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03620" sboTerm="SBO:0000176" id="R_MAR03620" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -397235,7 +397133,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03620">
+            <rdf:Description rdf:about="#R_MAR03620">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.16"/>
@@ -397248,16 +397146,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03364c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03364c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03365c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03365c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03621" sboTerm="SBO:0000176" id="MAR03621" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03621" sboTerm="SBO:0000176" id="R_MAR03621" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -397266,7 +397164,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03621">
+            <rdf:Description rdf:about="#R_MAR03621">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.17"/>
@@ -397279,13 +397177,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03364r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03364r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02554r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03365r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03365r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -397294,7 +397192,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03623" sboTerm="SBO:0000176" id="MAR03623" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03623" sboTerm="SBO:0000176" id="R_MAR03623" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -397303,7 +397201,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03623">
+            <rdf:Description rdf:about="#R_MAR03623">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.17"/>
@@ -397316,14 +397214,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03365c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03365c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03366c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03366c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03624" sboTerm="SBO:0000176" id="MAR03624" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03624" sboTerm="SBO:0000176" id="R_MAR03624" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -397332,7 +397230,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03624">
+            <rdf:Description rdf:about="#R_MAR03624">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.17"/>
@@ -397345,11 +397243,11 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03365r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03365r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03366r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03366r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -397358,7 +397256,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03745" sboTerm="SBO:0000176" id="MAR03745" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03745" sboTerm="SBO:0000176" id="R_MAR03745" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -397367,7 +397265,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03745">
+            <rdf:Description rdf:about="#R_MAR03745">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/5.1.99.4"/>
@@ -397380,16 +397278,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03366c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03366c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02647c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02647c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03749" sboTerm="SBO:0000176" id="MAR03749" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03749" sboTerm="SBO:0000176" id="R_MAR03749" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -397398,7 +397296,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03749">
+            <rdf:Description rdf:about="#R_MAR03749">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/RE3244R"/>
@@ -397410,13 +397308,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03366r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03366r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02554r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02647r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02647r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -397425,7 +397323,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03754" sboTerm="SBO:0000176" id="MAR03754" name="Enoyl Coenzyme A Hydratase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03754" sboTerm="SBO:0000176" id="R_MAR03754" name="Enoyl Coenzyme A Hydratase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -397434,7 +397332,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03754">
+            <rdf:Description rdf:about="#R_MAR03754">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.17"/>
@@ -397445,14 +397343,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00749m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00749m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03367m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03367m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03758" sboTerm="SBO:0000176" id="MAR03758" name="3-Hydroxyacyl Coenzyme A Dehydrogenase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03758" sboTerm="SBO:0000176" id="R_MAR03758" name="3-Hydroxyacyl Coenzyme A Dehydrogenase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -397461,7 +397359,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03758">
+            <rdf:Description rdf:about="#R_MAR03758">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.35"/>
@@ -397474,16 +397372,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02552c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03367c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03367c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03368c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03368c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03760" sboTerm="SBO:0000176" id="MAR03760" name="3-Hydroxyacyl Coenzyme A Dehydrogenase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03760" sboTerm="SBO:0000176" id="R_MAR03760" name="3-Hydroxyacyl Coenzyme A Dehydrogenase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -397492,7 +397390,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03760">
+            <rdf:Description rdf:about="#R_MAR03760">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.35"/>
@@ -397503,13 +397401,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02552m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03367m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03367m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03368m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03368m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -397518,7 +397416,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03764" sboTerm="SBO:0000176" id="MAR03764" name="3-Hydroxyacyl Coenzyme A Dehydrogenase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03764" sboTerm="SBO:0000176" id="R_MAR03764" name="3-Hydroxyacyl Coenzyme A Dehydrogenase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -397527,7 +397425,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03764">
+            <rdf:Description rdf:about="#R_MAR03764">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.35"/>
@@ -397538,19 +397436,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02552x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03367x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03367x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03368x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03368x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Mfe2"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03766" sboTerm="SBO:0000176" id="MAR03766" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03766" sboTerm="SBO:0000176" id="R_MAR03766" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -397559,7 +397457,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03766">
+            <rdf:Description rdf:about="#R_MAR03766">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/RE3251C"/>
@@ -397571,18 +397469,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01090c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01090c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01091c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01091c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03768" sboTerm="SBO:0000176" id="MAR03768" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03768" sboTerm="SBO:0000176" id="R_MAR03768" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -397591,7 +397489,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03768">
+            <rdf:Description rdf:about="#R_MAR03768">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/RE3251M"/>
@@ -397603,15 +397501,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01090m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01090m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01091m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01091m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -397620,7 +397518,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03774" sboTerm="SBO:0000176" id="MAR03774" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03774" sboTerm="SBO:0000176" id="R_MAR03774" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -397629,7 +397527,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03774">
+            <rdf:Description rdf:about="#R_MAR03774">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/RE3252C"/>
@@ -397641,14 +397539,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01091c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01091c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03779" sboTerm="SBO:0000176" id="MAR03779" name="Phospholipase D" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03779" sboTerm="SBO:0000176" id="R_MAR03779" name="Phospholipase D" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -397657,7 +397555,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03779">
+            <rdf:Description rdf:about="#R_MAR03779">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.4.4"/>
@@ -397670,19 +397568,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02750c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02750c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02171c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02730c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02171c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02730c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Pld"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03781" sboTerm="SBO:0000176" id="MAR03781" name="Phospholipase D" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03781" sboTerm="SBO:0000176" id="R_MAR03781" name="Phospholipase D" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -397691,7 +397589,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03781">
+            <rdf:Description rdf:about="#R_MAR03781">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.4.4"/>
@@ -397704,19 +397602,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02750g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02750g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02171g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02730g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02171g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02730g" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Pld"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03786" sboTerm="SBO:0000176" id="MAR03786" name="Phospholipase D" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03786" sboTerm="SBO:0000176" id="R_MAR03786" name="Phospholipase D" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -397725,7 +397623,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03786">
+            <rdf:Description rdf:about="#R_MAR03786">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.4.4"/>
@@ -397738,19 +397636,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02750r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02750r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02171r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02730r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02171r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02730r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Pld"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03788" sboTerm="SBO:0000176" id="MAR03788" name="Unspecific Monooxygenase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03788" sboTerm="SBO:0000176" id="R_MAR03788" name="Unspecific Monooxygenase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -397759,7 +397657,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03788">
+            <rdf:Description rdf:about="#R_MAR03788">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.14.1"/>
@@ -397772,14 +397670,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01362r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01803r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01362r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01803r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01802r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00279r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01802r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00279r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -397789,7 +397687,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03791" sboTerm="SBO:0000176" id="MAR03791" name="Phospholipase D" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03791" sboTerm="SBO:0000176" id="R_MAR03791" name="Phospholipase D" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -397798,7 +397696,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03791">
+            <rdf:Description rdf:about="#R_MAR03791">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.4.4"/>
@@ -397811,19 +397709,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02808g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02808g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02896g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02731g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02896g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02731g" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Pld"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03798" sboTerm="SBO:0000176" id="MAR03798" name="Phospholipase D" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03798" sboTerm="SBO:0000176" id="R_MAR03798" name="Phospholipase D" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -397832,7 +397730,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03798">
+            <rdf:Description rdf:about="#R_MAR03798">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.4.4"/>
@@ -397845,19 +397743,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02808r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02808r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02896r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02731r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02896r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02731r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Pld"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03801" sboTerm="SBO:0000176" id="MAR03801" name="Long-Chain-Fatty-Acid- Coenzyme A Ligase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03801" sboTerm="SBO:0000176" id="R_MAR03801" name="Long-Chain-Fatty-Acid- Coenzyme A Ligase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -397866,7 +397764,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03801">
+            <rdf:Description rdf:about="#R_MAR03801">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.3"/>
@@ -397879,14 +397777,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01151m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01151m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01120m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01334m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01120m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -397895,7 +397793,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03803" sboTerm="SBO:0000176" id="MAR03803" name="Long-Chain-Fatty-Acid- Coenzyme A Ligase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03803" sboTerm="SBO:0000176" id="R_MAR03803" name="Long-Chain-Fatty-Acid- Coenzyme A Ligase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -397904,7 +397802,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03803">
+            <rdf:Description rdf:about="#R_MAR03803">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.3"/>
@@ -397917,14 +397815,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01151r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01151r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01120r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01334r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01120r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -397934,7 +397832,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03805" sboTerm="SBO:0000176" id="MAR03805" name="Long-Chain-Fatty-Acid- Coenzyme A Ligase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03805" sboTerm="SBO:0000176" id="R_MAR03805" name="Long-Chain-Fatty-Acid- Coenzyme A Ligase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -397943,7 +397841,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03805">
+            <rdf:Description rdf:about="#R_MAR03805">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.3"/>
@@ -397956,14 +397854,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01151x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01151x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01120x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01334x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01120x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -397973,7 +397871,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03808" sboTerm="SBO:0000176" id="MAR03808" name="3-Hydroxyacyl Coenzyme A Dehydrogenase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03808" sboTerm="SBO:0000176" id="R_MAR03808" name="3-Hydroxyacyl Coenzyme A Dehydrogenase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -397982,7 +397880,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03808">
+            <rdf:Description rdf:about="#R_MAR03808">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.35"/>
@@ -397995,19 +397893,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02552c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00689c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00689c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00740c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00740c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="scu"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03812" sboTerm="SBO:0000176" id="MAR03812" name="3-Hydroxyacyl Coenzyme A Dehydrogenase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03812" sboTerm="SBO:0000176" id="R_MAR03812" name="3-Hydroxyacyl Coenzyme A Dehydrogenase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -398016,7 +397914,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03812">
+            <rdf:Description rdf:about="#R_MAR03812">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.35"/>
@@ -398029,19 +397927,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02552c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00690c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00690c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00741c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00741c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="scu"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03815" sboTerm="SBO:0000176" id="MAR03815" name="Aldehyde Dehydrogenase (NAD+)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03815" sboTerm="SBO:0000176" id="R_MAR03815" name="Aldehyde Dehydrogenase (NAD+)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -398050,7 +397948,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03815">
+            <rdf:Description rdf:about="#R_MAR03815">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.2.1.3"/>
@@ -398062,17 +397960,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00752c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02553c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00752c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02553c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03817" sboTerm="SBO:0000176" id="MAR03817" name="Aldehyde Dehydrogenase (NAD+)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03817" sboTerm="SBO:0000176" id="R_MAR03817" name="Aldehyde Dehydrogenase (NAD+)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -398081,7 +397979,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03817">
+            <rdf:Description rdf:about="#R_MAR03817">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.2.1.3"/>
@@ -398093,14 +397991,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00752m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00752m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00751m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00751m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -398109,7 +398007,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03821" sboTerm="SBO:0000176" id="MAR03821" name="Aldehyde Dehydrogenase (NAD+)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03821" sboTerm="SBO:0000176" id="R_MAR03821" name="Aldehyde Dehydrogenase (NAD+)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -398118,7 +398016,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03821">
+            <rdf:Description rdf:about="#R_MAR03821">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.2.1.3"/>
@@ -398129,17 +398027,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00752r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039r" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02553r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00752r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02553r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00751r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00751r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03824" sboTerm="SBO:0000176" id="MAR03824" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03824" sboTerm="SBO:0000176" id="R_MAR03824" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -398148,7 +398046,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03824">
+            <rdf:Description rdf:about="#R_MAR03824">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.14.1"/>
@@ -398159,16 +398057,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00516c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00516c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01513c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03320c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01513c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03320c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03826" sboTerm="SBO:0000176" id="MAR03826" name="Beta-Glucuronidase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03826" sboTerm="SBO:0000176" id="R_MAR03826" name="Beta-Glucuronidase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -398177,7 +398075,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03826">
+            <rdf:Description rdf:about="#R_MAR03826">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.2.1.31"/>
@@ -398190,19 +398088,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01321e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01321e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01973e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00766e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01973e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00766e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG9701"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03828" sboTerm="SBO:0000176" id="MAR03828" name="Beta-Glucuronidase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03828" sboTerm="SBO:0000176" id="R_MAR03828" name="Beta-Glucuronidase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -398211,7 +398109,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03828">
+            <rdf:Description rdf:about="#R_MAR03828">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.2.1.31"/>
@@ -398224,19 +398122,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01321l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01321l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01973l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00766l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01973l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00766l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG15117"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03830" sboTerm="SBO:0000176" id="MAR03830" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03830" sboTerm="SBO:0000176" id="R_MAR03830" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -398245,7 +398143,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03830">
+            <rdf:Description rdf:about="#R_MAR03830">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.17"/>
@@ -398256,14 +398154,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01218c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01218c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00311c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00311c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03834" sboTerm="SBO:0000176" id="MAR03834" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03834" sboTerm="SBO:0000176" id="R_MAR03834" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -398272,7 +398170,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03834">
+            <rdf:Description rdf:about="#R_MAR03834">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.5.1.29"/>
@@ -398285,13 +398183,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02796m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02796m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01662m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01662m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03836" sboTerm="SBO:0000176" id="MAR03836" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03836" sboTerm="SBO:0000176" id="R_MAR03836" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -398300,7 +398198,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03836">
+            <rdf:Description rdf:about="#R_MAR03836">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/RE3421R"/>
@@ -398312,13 +398210,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02796r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02796r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01662r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01662r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03840" sboTerm="SBO:0000176" id="MAR03840" name="Leukotriene-B4 20-Monooxygenase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03840" sboTerm="SBO:0000176" id="R_MAR03840" name="Leukotriene-B4 20-Monooxygenase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -398327,7 +398225,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03840">
+            <rdf:Description rdf:about="#R_MAR03840">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.13.30"/>
@@ -398340,18 +398238,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00252c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00252c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03846" sboTerm="SBO:0000176" id="MAR03846" name="Long-Chain-Fatty-Acid- Coenzyme A Ligase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03846" sboTerm="SBO:0000176" id="R_MAR03846" name="Long-Chain-Fatty-Acid- Coenzyme A Ligase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -398360,7 +398258,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03846">
+            <rdf:Description rdf:about="#R_MAR03846">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.3"/>
@@ -398373,14 +398271,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00252m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00252m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00258m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01334m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00258m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -398389,7 +398287,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03872" sboTerm="SBO:0000176" id="MAR03872" name="Long-Chain-Fatty-Acid- Coenzyme A Ligase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03872" sboTerm="SBO:0000176" id="R_MAR03872" name="Long-Chain-Fatty-Acid- Coenzyme A Ligase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -398398,7 +398296,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03872">
+            <rdf:Description rdf:about="#R_MAR03872">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.3"/>
@@ -398411,14 +398309,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00252r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00252r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00258r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01334r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00258r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -398428,7 +398326,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03874" sboTerm="SBO:0000176" id="MAR03874" name="Long-Chain-Fatty-Acid- Coenzyme A Ligase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03874" sboTerm="SBO:0000176" id="R_MAR03874" name="Long-Chain-Fatty-Acid- Coenzyme A Ligase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -398437,7 +398335,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03874">
+            <rdf:Description rdf:about="#R_MAR03874">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.3"/>
@@ -398450,14 +398348,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00252x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00252x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00258x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01334x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00258x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -398467,7 +398365,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03876" sboTerm="SBO:0000176" id="MAR03876" name="3-Hydroxyacyl Coenzyme A Dehydrogenase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03876" sboTerm="SBO:0000176" id="R_MAR03876" name="3-Hydroxyacyl Coenzyme A Dehydrogenase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -398476,7 +398374,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03876">
+            <rdf:Description rdf:about="#R_MAR03876">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.35"/>
@@ -398489,19 +398387,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02552c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00691c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00691c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00846c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00846c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="scu"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03878" sboTerm="SBO:0000176" id="MAR03878" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03878" sboTerm="SBO:0000176" id="R_MAR03878" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -398510,7 +398408,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03878">
+            <rdf:Description rdf:about="#R_MAR03878">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/RE3449C"/>
@@ -398520,16 +398418,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01362c" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="5" constant="true"/>
-          <speciesReference species="MAM02631c" stoichiometry="5" constant="true"/>
+          <speciesReference species="M_MAM01362c" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="5" constant="true"/>
+          <speciesReference species="M_MAM02631c" stoichiometry="5" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01246c" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM01246c" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="4" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03880" sboTerm="SBO:0000176" id="MAR03880" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03880" sboTerm="SBO:0000176" id="R_MAR03880" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -398538,7 +398436,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03880">
+            <rdf:Description rdf:about="#R_MAR03880">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/RE3452C"/>
@@ -398548,16 +398446,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01362c" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="5" constant="true"/>
-          <speciesReference species="MAM02631c" stoichiometry="5" constant="true"/>
+          <speciesReference species="M_MAM01362c" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="5" constant="true"/>
+          <speciesReference species="M_MAM02631c" stoichiometry="5" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00335c" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM00335c" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="4" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03882" sboTerm="SBO:0000176" id="MAR03882" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03882" sboTerm="SBO:0000176" id="R_MAR03882" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -398566,7 +398464,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03882">
+            <rdf:Description rdf:about="#R_MAR03882">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/RE3455C"/>
@@ -398576,15 +398474,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01362c" stoichiometry="4" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="5" constant="true"/>
+          <speciesReference species="M_MAM01362c" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="5" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01214c" stoichiometry="4" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01214c" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03884" sboTerm="SBO:0000176" id="MAR03884" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03884" sboTerm="SBO:0000176" id="R_MAR03884" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -398593,7 +398491,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03884">
+            <rdf:Description rdf:about="#R_MAR03884">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/RE3458C"/>
@@ -398603,16 +398501,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01362c" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="5" constant="true"/>
-          <speciesReference species="MAM02631c" stoichiometry="5" constant="true"/>
+          <speciesReference species="M_MAM01362c" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="5" constant="true"/>
+          <speciesReference species="M_MAM02631c" stoichiometry="5" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00302c" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM00302c" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="4" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03887" sboTerm="SBO:0000176" id="MAR03887" name="Carbonyl Reductase (NADPH)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03887" sboTerm="SBO:0000176" id="R_MAR03887" name="Carbonyl Reductase (NADPH)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -398621,7 +398519,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03887">
+            <rdf:Description rdf:about="#R_MAR03887">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.184"/>
@@ -398634,19 +398532,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02364m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02364m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01123m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01123m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Dhrs4"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03888" sboTerm="SBO:0000176" id="MAR03888" name="Carbonyl Reductase (NADPH)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03888" sboTerm="SBO:0000176" id="R_MAR03888" name="Carbonyl Reductase (NADPH)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -398655,7 +398553,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03888">
+            <rdf:Description rdf:about="#R_MAR03888">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.184"/>
@@ -398668,19 +398566,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02364x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02364x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01123x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01123x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Dhrs4"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03894" sboTerm="SBO:0000176" id="MAR03894" name="Carbonyl Reductase (NADPH)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03894" sboTerm="SBO:0000176" id="R_MAR03894" name="Carbonyl Reductase (NADPH)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -398689,7 +398587,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03894">
+            <rdf:Description rdf:about="#R_MAR03894">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.184"/>
@@ -398702,19 +398600,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01126m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01126m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Dhrs4"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03896" sboTerm="SBO:0000176" id="MAR03896" name="Carbonyl Reductase (NADPH)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03896" sboTerm="SBO:0000176" id="R_MAR03896" name="Carbonyl Reductase (NADPH)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -398723,7 +398621,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03896">
+            <rdf:Description rdf:about="#R_MAR03896">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.184"/>
@@ -398736,19 +398634,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02554x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01040x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01040x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01126x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01126x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Dhrs4"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03898" sboTerm="SBO:0000176" id="MAR03898" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03898" sboTerm="SBO:0000176" id="R_MAR03898" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -398757,7 +398655,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03898">
+            <rdf:Description rdf:about="#R_MAR03898">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.2.2"/>
@@ -398770,14 +398668,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00380c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00380c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00376c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00376c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03909" sboTerm="SBO:0000176" id="MAR03909" name="Leukotriene-B4 20-Monooxygenase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03909" sboTerm="SBO:0000176" id="R_MAR03909" name="Leukotriene-B4 20-Monooxygenase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -398786,7 +398684,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03909">
+            <rdf:Description rdf:about="#R_MAR03909">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.13.30"/>
@@ -398799,18 +398697,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02364c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02364c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01047c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01047c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03914" sboTerm="SBO:0000176" id="MAR03914" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03914" sboTerm="SBO:0000176" id="R_MAR03914" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -398819,7 +398717,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03914">
+            <rdf:Description rdf:about="#R_MAR03914">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.13.30"/>
@@ -398832,14 +398730,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03325c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03325c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03510c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03405c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03510c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03405c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03918" sboTerm="SBO:0000176" id="MAR03918" name="Glutathione Peroxidase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03918" sboTerm="SBO:0000176" id="R_MAR03918" name="Glutathione Peroxidase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -398848,7 +398746,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03918">
+            <rdf:Description rdf:about="#R_MAR03918">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.11.1.9"/>
@@ -398861,16 +398759,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00309m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00309m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02096m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02096m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="PHGPx"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03924" sboTerm="SBO:0000176" id="MAR03924" name="Glutathione Peroxidase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03924" sboTerm="SBO:0000176" id="R_MAR03924" name="Glutathione Peroxidase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -398879,7 +398777,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03924">
+            <rdf:Description rdf:about="#R_MAR03924">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.11.1.9"/>
@@ -398892,16 +398790,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00309n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00309n" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02096n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02096n" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="PHGPx"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03926" sboTerm="SBO:0000176" id="MAR03926" name="Glutathione Transferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03926" sboTerm="SBO:0000176" id="R_MAR03926" name="Glutathione Transferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -398910,7 +398808,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03926">
+            <rdf:Description rdf:about="#R_MAR03926">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.5.1.18"/>
@@ -398923,11 +398821,11 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02026m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02096m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02096m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02097m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02097m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -398936,7 +398834,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03927" sboTerm="SBO:0000176" id="MAR03927" name="Arachidonate 12-Lipoxygenase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03927" sboTerm="SBO:0000176" id="R_MAR03927" name="Arachidonate 12-Lipoxygenase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -398945,7 +398843,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03927">
+            <rdf:Description rdf:about="#R_MAR03927">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.13.11.31"/>
@@ -398958,14 +398856,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02630n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01040n" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02630n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01040n" stoichiometry="2" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02364n" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02364n" stoichiometry="2" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03930" sboTerm="SBO:0000176" id="MAR03930" name="Arachidonate 12-Lipoxygenase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03930" sboTerm="SBO:0000176" id="R_MAR03930" name="Arachidonate 12-Lipoxygenase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -398974,7 +398872,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03930">
+            <rdf:Description rdf:about="#R_MAR03930">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.13.11.31"/>
@@ -398987,14 +398885,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02630x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01040x" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02630x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01040x" stoichiometry="2" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02364x" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02364x" stoichiometry="2" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03934" sboTerm="SBO:0000176" id="MAR03934" name="Arachidonate 12-Lipoxygenase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03934" sboTerm="SBO:0000176" id="R_MAR03934" name="Arachidonate 12-Lipoxygenase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -399003,7 +398901,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03934">
+            <rdf:Description rdf:about="#R_MAR03934">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.13.11.31"/>
@@ -399016,14 +398914,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02630m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01126m" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02630m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01126m" stoichiometry="2" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01123m" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01123m" stoichiometry="2" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03936" sboTerm="SBO:0000176" id="MAR03936" name="Arachidonate 12-Lipoxygenase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03936" sboTerm="SBO:0000176" id="R_MAR03936" name="Arachidonate 12-Lipoxygenase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -399032,7 +398930,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03936">
+            <rdf:Description rdf:about="#R_MAR03936">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.13.11.31"/>
@@ -399045,14 +398943,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02630x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01126x" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02630x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01126x" stoichiometry="2" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01123x" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01123x" stoichiometry="2" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03938" sboTerm="SBO:0000176" id="MAR03938" name="Glutathione Transferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03938" sboTerm="SBO:0000176" id="R_MAR03938" name="Glutathione Transferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -399061,7 +398959,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03938">
+            <rdf:Description rdf:about="#R_MAR03938">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.5.1.18"/>
@@ -399074,11 +398972,11 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02026m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01234m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01234m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02859m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02859m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -399087,7 +398985,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03941" sboTerm="SBO:0000176" id="MAR03941" name="Glutathione Transferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03941" sboTerm="SBO:0000176" id="R_MAR03941" name="Glutathione Transferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -399096,7 +398994,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03941">
+            <rdf:Description rdf:about="#R_MAR03941">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.5.1.18"/>
@@ -399109,17 +399007,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02026r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01234r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01234r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02859r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02859r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Mgstl"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03942" sboTerm="SBO:0000176" id="MAR03942" name="Glutathione Transferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03942" sboTerm="SBO:0000176" id="R_MAR03942" name="Glutathione Transferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -399128,7 +399026,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03942">
+            <rdf:Description rdf:about="#R_MAR03942">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.5.1.18"/>
@@ -399141,11 +399039,11 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02026m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02796m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02796m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02864m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02864m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -399154,7 +399052,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03943" sboTerm="SBO:0000176" id="MAR03943" name="Glutathione Transferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03943" sboTerm="SBO:0000176" id="R_MAR03943" name="Glutathione Transferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -399163,7 +399061,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03943">
+            <rdf:Description rdf:about="#R_MAR03943">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.5.1.18"/>
@@ -399176,17 +399074,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02026r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02796r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02796r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02864r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02864r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Mgstl"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03945" sboTerm="SBO:0000176" id="MAR03945" name="Glutathione Transferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03945" sboTerm="SBO:0000176" id="R_MAR03945" name="Glutathione Transferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -399195,7 +399093,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03945">
+            <rdf:Description rdf:about="#R_MAR03945">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.5.1.18"/>
@@ -399208,11 +399106,11 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02026m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01662m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01662m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02860m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02860m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -399221,7 +399119,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03961" sboTerm="SBO:0000176" id="MAR03961" name="Glutathione Transferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03961" sboTerm="SBO:0000176" id="R_MAR03961" name="Glutathione Transferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -399230,7 +399128,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03961">
+            <rdf:Description rdf:about="#R_MAR03961">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.5.1.18"/>
@@ -399243,17 +399141,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01662r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02026r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01662r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02860r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02860r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Mgstl"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03962" sboTerm="SBO:0000176" id="MAR03962" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03962" sboTerm="SBO:0000176" id="R_MAR03962" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -399262,7 +399160,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03962">
+            <rdf:Description rdf:about="#R_MAR03962">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.13.11.34"/>
@@ -399275,15 +399173,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039r" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02783r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02783r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01234r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01234r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR03963" sboTerm="SBO:0000176" id="MAR03963" name="Glutathione Transferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03963" sboTerm="SBO:0000176" id="R_MAR03963" name="Glutathione Transferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -399292,7 +399190,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03963">
+            <rdf:Description rdf:about="#R_MAR03963">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.5.1.18"/>
@@ -399305,11 +399203,11 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02026m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02777m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02777m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02863m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02863m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -399318,7 +399216,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03973" sboTerm="SBO:0000176" id="MAR03973" name="Glutathione Transferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03973" sboTerm="SBO:0000176" id="R_MAR03973" name="Glutathione Transferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -399327,7 +399225,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03973">
+            <rdf:Description rdf:about="#R_MAR03973">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.5.1.18"/>
@@ -399340,17 +399238,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02026r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02777r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02777r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02863r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02863r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Mgstl"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03976" sboTerm="SBO:0000176" id="MAR03976" name="Glutathione Transferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03976" sboTerm="SBO:0000176" id="R_MAR03976" name="Glutathione Transferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -399359,7 +399257,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03976">
+            <rdf:Description rdf:about="#R_MAR03976">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.5.1.18"/>
@@ -399372,11 +399270,11 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02026m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02776m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02776m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02862m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02862m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -399385,7 +399283,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03978" sboTerm="SBO:0000176" id="MAR03978" name="Glutathione Transferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03978" sboTerm="SBO:0000176" id="R_MAR03978" name="Glutathione Transferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -399394,7 +399292,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03978">
+            <rdf:Description rdf:about="#R_MAR03978">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.5.1.18"/>
@@ -399407,17 +399305,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02026r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02776r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02776r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02862r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02862r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Mgstl"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03983" sboTerm="SBO:0000176" id="MAR03983" name="3-Hydroxyacyl Coenzyme A Dehydrogenase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03983" sboTerm="SBO:0000176" id="R_MAR03983" name="3-Hydroxyacyl Coenzyme A Dehydrogenase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -399426,7 +399324,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03983">
+            <rdf:Description rdf:about="#R_MAR03983">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.35"/>
@@ -399439,19 +399337,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02552c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00581c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00581c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00420c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00420c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="scu"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03985" sboTerm="SBO:0000176" id="MAR03985" name="Prostaglandin-E Synthase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03985" sboTerm="SBO:0000176" id="R_MAR03985" name="Prostaglandin-E Synthase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -399460,7 +399358,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03985">
+            <rdf:Description rdf:about="#R_MAR03985">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/5.3.99.3"/>
@@ -399473,16 +399371,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02793n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02793n" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02785n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02785n" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="p23"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03990" sboTerm="SBO:0000176" id="MAR03990" name="Carbonyl Reductase (NADPH)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03990" sboTerm="SBO:0000176" id="R_MAR03990" name="Carbonyl Reductase (NADPH)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -399491,7 +399389,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03990">
+            <rdf:Description rdf:about="#R_MAR03990">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.184"/>
@@ -399504,19 +399402,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00329m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00329m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02554m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00328m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00328m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Dhrs4"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03994" sboTerm="SBO:0000176" id="MAR03994" name="Carbonyl Reductase (NADPH)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03994" sboTerm="SBO:0000176" id="R_MAR03994" name="Carbonyl Reductase (NADPH)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -399525,7 +399423,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03994">
+            <rdf:Description rdf:about="#R_MAR03994">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.184"/>
@@ -399538,19 +399436,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00329x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00329x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02554x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00328x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00328x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Dhrs4"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR03997" sboTerm="SBO:0000176" id="MAR03997" name="Acyl Coenzyme A Oxidase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR03997" sboTerm="SBO:0000176" id="R_MAR03997" name="Acyl Coenzyme A Oxidase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -399559,7 +399457,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR03997">
+            <rdf:Description rdf:about="#R_MAR03997">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.3.6"/>
@@ -399571,18 +399469,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02630m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03352m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03352m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02041m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03021m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03021m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="ACOX1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04001" sboTerm="SBO:0000176" id="MAR04001" name="Acyl Coenzyme A Oxidase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04001" sboTerm="SBO:0000176" id="R_MAR04001" name="Acyl Coenzyme A Oxidase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -399591,7 +399489,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04001">
+            <rdf:Description rdf:about="#R_MAR04001">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.3.6"/>
@@ -399602,12 +399500,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02630x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03352x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03352x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02041x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03021x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03021x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -399616,7 +399514,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04003" sboTerm="SBO:0000176" id="MAR04003" name="Acyl Coenzyme A Oxidase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04003" sboTerm="SBO:0000176" id="R_MAR04003" name="Acyl Coenzyme A Oxidase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -399625,7 +399523,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04003">
+            <rdf:Description rdf:about="#R_MAR04003">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.3.6"/>
@@ -399637,18 +399535,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00980m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00980m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00678m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02041m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00678m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="ACOX1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04005" sboTerm="SBO:0000176" id="MAR04005" name="3-Hydroxyacyl Coenzyme A Dehydrogenase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04005" sboTerm="SBO:0000176" id="R_MAR04005" name="3-Hydroxyacyl Coenzyme A Dehydrogenase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -399657,7 +399555,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04005">
+            <rdf:Description rdf:about="#R_MAR04005">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.35"/>
@@ -399668,19 +399566,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00678c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00678c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03035c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03035c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="scu"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04007" sboTerm="SBO:0000176" id="MAR04007" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04007" sboTerm="SBO:0000176" id="R_MAR04007" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -399689,7 +399587,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04007">
+            <rdf:Description rdf:about="#R_MAR04007">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.3.6"/>
@@ -399702,15 +399600,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01936c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01936c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01211c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01211c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR04009" sboTerm="SBO:0000176" id="MAR04009" name="Flavin-Containing Monooxygenase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04009" sboTerm="SBO:0000176" id="R_MAR04009" name="Flavin-Containing Monooxygenase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -399718,7 +399616,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04009">
+            <rdf:Description rdf:about="#R_MAR04009">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.13.8"/>
@@ -399731,18 +399629,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02891r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02891r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02892r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02892r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR04011" sboTerm="SBO:0000176" id="MAR04011" name="Methionine Synthase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04011" sboTerm="SBO:0000176" id="R_MAR04011" name="Methionine Synthase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -399750,7 +399648,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04011">
+            <rdf:Description rdf:about="#R_MAR04011">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.1.1.13"/>
@@ -399763,16 +399661,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01115n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02890n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01115n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02890n" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02980n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02891n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02980n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02891n" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR04013" sboTerm="SBO:0000176" id="MAR04013" name="Methionine Synthase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04013" sboTerm="SBO:0000176" id="R_MAR04013" name="Methionine Synthase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -399780,7 +399678,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04013">
+            <rdf:Description rdf:about="#R_MAR04013">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.1.1.13"/>
@@ -399793,16 +399691,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01115r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02890r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01115r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02890r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02891r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02980r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02891r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02980r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR04015" sboTerm="SBO:0000176" id="MAR04015" name="Methionine Synthase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04015" sboTerm="SBO:0000176" id="R_MAR04015" name="Methionine Synthase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -399810,7 +399708,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04015">
+            <rdf:Description rdf:about="#R_MAR04015">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.1.1.13"/>
@@ -399823,14 +399721,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02617r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02617r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039r" stoichiometry="5" constant="true"/>
-          <speciesReference species="MAM02618r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="5" constant="true"/>
+          <speciesReference species="M_MAM02618r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR04017" sboTerm="SBO:0000176" id="MAR04017" name="Unspecific Monooxygenase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04017" sboTerm="SBO:0000176" id="R_MAR04017" name="Unspecific Monooxygenase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -399838,7 +399736,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04017">
+            <rdf:Description rdf:about="#R_MAR04017">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.14.1"/>
@@ -399851,18 +399749,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01374c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01374c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03381c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03381c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR04019" sboTerm="SBO:0000176" id="MAR04019" name="Unspecific Monooxygenase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04019" sboTerm="SBO:0000176" id="R_MAR04019" name="Unspecific Monooxygenase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -399870,7 +399768,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04019">
+            <rdf:Description rdf:about="#R_MAR04019">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.14.1"/>
@@ -399883,15 +399781,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01374r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01374r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03381r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03381r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -399901,7 +399799,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04023" sboTerm="SBO:0000176" id="MAR04023" name="Microsomal Epoxide Hydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04023" sboTerm="SBO:0000176" id="R_MAR04023" name="Microsomal Epoxide Hydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -399909,7 +399807,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04023">
+            <rdf:Description rdf:about="#R_MAR04023">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.3.2.9"/>
@@ -399922,11 +399820,11 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03381r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03381r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03378r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03378r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -399936,7 +399834,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04029" sboTerm="SBO:0000176" id="MAR04029" name="Microsomal Epoxide Hydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04029" sboTerm="SBO:0000176" id="R_MAR04029" name="Microsomal Epoxide Hydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -399944,7 +399842,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04029">
+            <rdf:Description rdf:about="#R_MAR04029">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.3.2.9"/>
@@ -399957,12 +399855,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01375r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01375r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039r" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03379r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03379r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -399972,7 +399870,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04035" sboTerm="SBO:0000176" id="MAR04035" name="Microsomal Epoxide Hydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04035" sboTerm="SBO:0000176" id="R_MAR04035" name="Microsomal Epoxide Hydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -399980,7 +399878,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04035">
+            <rdf:Description rdf:about="#R_MAR04035">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.3.2.9"/>
@@ -399993,12 +399891,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01379r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01379r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039r" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03380r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03380r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -400008,7 +399906,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04039" sboTerm="SBO:0000176" id="MAR04039" name="Unspecific Monooxygenase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04039" sboTerm="SBO:0000176" id="R_MAR04039" name="Unspecific Monooxygenase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -400016,7 +399914,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04039">
+            <rdf:Description rdf:about="#R_MAR04039">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.14.1"/>
@@ -400029,18 +399927,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01174c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01174c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03386c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03386c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR04041" sboTerm="SBO:0000176" id="MAR04041" name="Unspecific Monooxygenase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04041" sboTerm="SBO:0000176" id="R_MAR04041" name="Unspecific Monooxygenase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -400048,7 +399946,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04041">
+            <rdf:Description rdf:about="#R_MAR04041">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.14.1"/>
@@ -400061,15 +399959,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01174r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01174r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03386r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03386r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -400079,7 +399977,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04045" sboTerm="SBO:0000176" id="MAR04045" name="Microsomal Epoxide Hydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04045" sboTerm="SBO:0000176" id="R_MAR04045" name="Microsomal Epoxide Hydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -400087,7 +399985,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04045">
+            <rdf:Description rdf:about="#R_MAR04045">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.3.2.9"/>
@@ -400100,11 +399998,11 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03386r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03386r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03387r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03387r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -400114,7 +400012,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04049" sboTerm="SBO:0000176" id="MAR04049" name="Unspecific Monooxygenase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04049" sboTerm="SBO:0000176" id="R_MAR04049" name="Unspecific Monooxygenase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -400122,7 +400020,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04049">
+            <rdf:Description rdf:about="#R_MAR04049">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.14.1"/>
@@ -400135,18 +400033,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03387c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03387c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03388c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03388c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR04051" sboTerm="SBO:0000176" id="MAR04051" name="Unspecific Monooxygenase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04051" sboTerm="SBO:0000176" id="R_MAR04051" name="Unspecific Monooxygenase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -400154,7 +400052,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04051">
+            <rdf:Description rdf:about="#R_MAR04051">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.14.1"/>
@@ -400167,15 +400065,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03387r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03387r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03388r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03388r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -400185,7 +400083,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04053" sboTerm="SBO:0000176" id="MAR04053" name="Unspecific Monooxygenase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04053" sboTerm="SBO:0000176" id="R_MAR04053" name="Unspecific Monooxygenase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -400193,7 +400091,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04053">
+            <rdf:Description rdf:about="#R_MAR04053">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.14.1"/>
@@ -400206,18 +400104,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03382c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03382c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03383c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03383c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR04055" sboTerm="SBO:0000176" id="MAR04055" name="Unspecific Monooxygenase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04055" sboTerm="SBO:0000176" id="R_MAR04055" name="Unspecific Monooxygenase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -400225,7 +400123,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04055">
+            <rdf:Description rdf:about="#R_MAR04055">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.14.1"/>
@@ -400238,15 +400136,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03382r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03382r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03383r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03383r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -400256,7 +400154,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04074" sboTerm="SBO:0000176" id="MAR04074" name="Microsomal Epoxide Hydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04074" sboTerm="SBO:0000176" id="R_MAR04074" name="Microsomal Epoxide Hydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -400264,7 +400162,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04074">
+            <rdf:Description rdf:about="#R_MAR04074">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.3.2.9"/>
@@ -400277,11 +400175,11 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03383r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03383r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03384r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03384r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -400291,7 +400189,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04088" sboTerm="SBO:0000176" id="MAR04088" name="Unspecific Monooxygenase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04088" sboTerm="SBO:0000176" id="R_MAR04088" name="Unspecific Monooxygenase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -400299,7 +400197,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04088">
+            <rdf:Description rdf:about="#R_MAR04088">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.14.1"/>
@@ -400312,18 +400210,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03384c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03384c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03385c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03385c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR04090" sboTerm="SBO:0000176" id="MAR04090" name="Unspecific Monooxygenase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04090" sboTerm="SBO:0000176" id="R_MAR04090" name="Unspecific Monooxygenase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -400331,7 +400229,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04090">
+            <rdf:Description rdf:about="#R_MAR04090">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.14.1"/>
@@ -400344,15 +400242,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02555r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03384r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03384r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03385r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03385r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -400362,7 +400260,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04092" sboTerm="SBO:0000627" id="MAR04092" name="Exchange of Prostaglandin H2" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04092" sboTerm="SBO:0000627" id="R_MAR04092" name="Exchange of Prostaglandin H2" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -400370,7 +400268,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04092">
+            <rdf:Description rdf:about="#R_MAR04092">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_prostgh2_e"/>
@@ -400382,10 +400280,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02794e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02794e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR04094" sboTerm="SBO:0000627" id="MAR04094" name="Exchange of Prostaglandin I2" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04094" sboTerm="SBO:0000627" id="R_MAR04094" name="Exchange of Prostaglandin I2" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -400393,7 +400291,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04094">
+            <rdf:Description rdf:about="#R_MAR04094">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_prostgi2_e"/>
@@ -400405,10 +400303,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02795e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02795e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR04096" sboTerm="SBO:0000627" id="MAR04096" name="Exchange of CDP" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04096" sboTerm="SBO:0000627" id="R_MAR04096" name="Exchange of CDP" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -400416,7 +400314,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04096">
+            <rdf:Description rdf:about="#R_MAR04096">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_cdp_e"/>
@@ -400428,10 +400326,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01424e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01424e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR04098" sboTerm="SBO:0000627" id="MAR04098" name="Exchange of ({[ (2R, 3S, 5R)-3-Hydroxy-5- (5-Methyl-2, 4-Dioxo-1, 2, 3, 4-Tetrahydropyrimidin-1-Yl)Oxolan-2-Yl]Methyl Phosphonato}Oxy)Phosphonate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04098" sboTerm="SBO:0000627" id="R_MAR04098" name="Exchange of ({[ (2R, 3S, 5R)-3-Hydroxy-5- (5-Methyl-2, 4-Dioxo-1, 2, 3, 4-Tetrahydropyrimidin-1-Yl)Oxolan-2-Yl]Methyl Phosphonato}Oxy)Phosphonate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -400439,7 +400337,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04098">
+            <rdf:Description rdf:about="#R_MAR04098">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_dtdp_e"/>
@@ -400451,10 +400349,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01747e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01747e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR04100" sboTerm="SBO:0000627" id="MAR04100" name="Exchange of L-3-Cyanoalanine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04100" sboTerm="SBO:0000627" id="R_MAR04100" name="Exchange of L-3-Cyanoalanine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -400462,7 +400360,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04100">
+            <rdf:Description rdf:about="#R_MAR04100">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_HC00955_e"/>
@@ -400474,10 +400372,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02326e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02326e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR04102" sboTerm="SBO:0000627" id="MAR04102" name="Exchange of Antichymotrypsin" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04102" sboTerm="SBO:0000627" id="R_MAR04102" name="Exchange of Antichymotrypsin" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -400485,7 +400383,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04102">
+            <rdf:Description rdf:about="#R_MAR04102">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/EX_HC00002[e]"/>
@@ -400495,10 +400393,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01343e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01343e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR04104" sboTerm="SBO:0000627" id="MAR04104" name="Exchange of Antitrypsin" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04104" sboTerm="SBO:0000627" id="R_MAR04104" name="Exchange of Antitrypsin" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -400506,7 +400404,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04104">
+            <rdf:Description rdf:about="#R_MAR04104">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/EX_HC00003[e]"/>
@@ -400516,10 +400414,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01345e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01345e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR04110" sboTerm="SBO:0000627" id="MAR04110" name="Exchange of Apoa1" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04110" sboTerm="SBO:0000627" id="R_MAR04110" name="Exchange of Apoa1" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -400527,7 +400425,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04110">
+            <rdf:Description rdf:about="#R_MAR04110">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_HC00004_e"/>
@@ -400539,10 +400437,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01350e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01350e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR04117" sboTerm="SBO:0000627" id="MAR04117" name="Exchange of Fibrinogen" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04117" sboTerm="SBO:0000627" id="R_MAR04117" name="Exchange of Fibrinogen" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -400550,7 +400448,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04117">
+            <rdf:Description rdf:about="#R_MAR04117">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/EX_HC01852[e]"/>
@@ -400560,10 +400458,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01827e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01827e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR04119" sboTerm="SBO:0000627" id="MAR04119" name="Exchange of Haptoglobin" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04119" sboTerm="SBO:0000627" id="R_MAR04119" name="Exchange of Haptoglobin" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -400571,7 +400469,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04119">
+            <rdf:Description rdf:about="#R_MAR04119">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/EX_HC01939[e]"/>
@@ -400581,10 +400479,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02044e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02044e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR04129" sboTerm="SBO:0000627" id="MAR04129" name="Exchange of Plasminogen" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04129" sboTerm="SBO:0000627" id="R_MAR04129" name="Exchange of Plasminogen" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -400592,7 +400490,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04129">
+            <rdf:Description rdf:about="#R_MAR04129">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/EX_HC01942[e]"/>
@@ -400602,10 +400500,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02753e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02753e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR04138" sboTerm="SBO:0000627" id="MAR04138" name="Exchange of Prothrombin" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04138" sboTerm="SBO:0000627" id="R_MAR04138" name="Exchange of Prothrombin" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -400613,7 +400511,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04138">
+            <rdf:Description rdf:about="#R_MAR04138">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/EX_HC01943[e]"/>
@@ -400623,10 +400521,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02802e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02802e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR04140" sboTerm="SBO:0000627" id="MAR04140" name="Exchange of Apotransferin" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04140" sboTerm="SBO:0000627" id="R_MAR04140" name="Exchange of Apotransferin" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -400634,7 +400532,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04140">
+            <rdf:Description rdf:about="#R_MAR04140">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/EX_HC01944[e]"/>
@@ -400644,10 +400542,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00186e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00186e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR04142" sboTerm="SBO:0000627" id="MAR04142" name="Exchange of Chitobiose" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04142" sboTerm="SBO:0000627" id="R_MAR04142" name="Exchange of Chitobiose" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -400655,7 +400553,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04142">
+            <rdf:Description rdf:about="#R_MAR04142">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_HC00822_e"/>
@@ -400667,10 +400565,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01439e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01439e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR04144" sboTerm="SBO:0000627" id="MAR04144" name="Exchange of Chenodeoxycholate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04144" sboTerm="SBO:0000627" id="R_MAR04144" name="Exchange of Chenodeoxycholate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -400678,7 +400576,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04144">
+            <rdf:Description rdf:about="#R_MAR04144">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_C02528_e"/>
@@ -400690,10 +400588,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03318e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03318e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR04146" sboTerm="SBO:0000627" id="MAR04146" name="Exchange of Taurolithocholate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04146" sboTerm="SBO:0000627" id="R_MAR04146" name="Exchange of Taurolithocholate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -400701,7 +400599,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04146">
+            <rdf:Description rdf:about="#R_MAR04146">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_HC02192_e"/>
@@ -400713,10 +400611,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02965e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02965e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR04148" sboTerm="SBO:0000627" id="MAR04148" name="Exchange of Glycolithocholate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04148" sboTerm="SBO:0000627" id="R_MAR04148" name="Exchange of Glycolithocholate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -400724,7 +400622,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04148">
+            <rdf:Description rdf:about="#R_MAR04148">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_HC02193_e"/>
@@ -400736,10 +400634,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02000e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02000e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR04150" sboTerm="SBO:0000627" id="MAR04150" name="Exchange of Tauroursodeoxycholate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04150" sboTerm="SBO:0000627" id="R_MAR04150" name="Exchange of Tauroursodeoxycholate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -400747,7 +400645,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04150">
+            <rdf:Description rdf:about="#R_MAR04150">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_HC02195_e"/>
@@ -400759,10 +400657,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02966e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02966e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR04151" sboTerm="SBO:0000627" id="MAR04151" name="Exchange of Glycoursodeoxycholate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04151" sboTerm="SBO:0000627" id="R_MAR04151" name="Exchange of Glycoursodeoxycholate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -400770,7 +400668,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04151">
+            <rdf:Description rdf:about="#R_MAR04151">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_HC02196_e"/>
@@ -400782,10 +400680,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02004e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02004e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR04153" sboTerm="SBO:0000627" id="MAR04153" name="Chenodeoxycholic acid 3-sulfate exchange" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04153" sboTerm="SBO:0000627" id="R_MAR04153" name="Chenodeoxycholic acid 3-sulfate exchange" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -400793,7 +400691,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04153">
+            <rdf:Description rdf:about="#R_MAR04153">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_HC02220_e"/>
@@ -400805,10 +400703,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02950e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02950e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR04154" sboTerm="SBO:0000627" id="MAR04154" name="Exchange" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04154" sboTerm="SBO:0000627" id="R_MAR04154" name="Exchange" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -400816,7 +400714,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04154">
+            <rdf:Description rdf:about="#R_MAR04154">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/EX_HC02154[e]"/>
@@ -400826,10 +400724,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03393e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03393e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR04155" sboTerm="SBO:0000627" id="MAR04155" name="Exchange of Glutathionyl-Leuc4" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04155" sboTerm="SBO:0000627" id="R_MAR04155" name="Exchange of Glutathionyl-Leuc4" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -400837,7 +400735,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04155">
+            <rdf:Description rdf:about="#R_MAR04155">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/EX_HC02199[e]"/>
@@ -400847,10 +400745,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01980e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01980e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR04157" sboTerm="SBO:0000627" id="MAR04157" name="Exchange of S-Glutathionyl-2-4-Dinitrobenzene" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04157" sboTerm="SBO:0000627" id="R_MAR04157" name="Exchange of S-Glutathionyl-2-4-Dinitrobenzene" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -400858,7 +400756,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04157">
+            <rdf:Description rdf:about="#R_MAR04157">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/EX_HC02200[e]"/>
@@ -400868,10 +400766,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02900e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02900e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR04161" sboTerm="SBO:0000627" id="MAR04161" name="Exchange of S-Glutathionyl-Ethacrynic-Acid" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04161" sboTerm="SBO:0000627" id="R_MAR04161" name="Exchange of S-Glutathionyl-Ethacrynic-Acid" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -400879,7 +400777,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04161">
+            <rdf:Description rdf:about="#R_MAR04161">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/EX_HC02201[e]"/>
@@ -400889,10 +400787,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02901e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02901e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR04164" sboTerm="SBO:0000627" id="MAR04164" name="Exchange of Lithocholate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04164" sboTerm="SBO:0000627" id="R_MAR04164" name="Exchange of Lithocholate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -400900,7 +400798,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04164">
+            <rdf:Description rdf:about="#R_MAR04164">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_HC02191_e"/>
@@ -400912,10 +400810,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02402e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02402e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR04173" sboTerm="SBO:0000627" id="MAR04173" name="Ursodeoxycholic acid exchange" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04173" sboTerm="SBO:0000627" id="R_MAR04173" name="Ursodeoxycholic acid exchange" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -400923,7 +400821,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04173">
+            <rdf:Description rdf:about="#R_MAR04173">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_HC02194_e"/>
@@ -400935,10 +400833,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03129e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03129e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR04178" sboTerm="SBO:0000627" id="MAR04178" name="Exchange of Sulfoglycolithocholate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04178" sboTerm="SBO:0000627" id="R_MAR04178" name="Exchange of Sulfoglycolithocholate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -400946,7 +400844,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04178">
+            <rdf:Description rdf:about="#R_MAR04178">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_HC02197_e"/>
@@ -400958,10 +400856,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02951e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02951e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR04181" sboTerm="SBO:0000627" id="MAR04181" name="Exchange of 2-[ (4R)-4-[ (1S, 2S, 5R, 7R, 10R, 11S, 14R, 15R)-2, 15-Dimethyl-5- (Sulfonatooxy)Tetracyclo[8.7.0.0^{2, 7}.0^{11, 15}]Heptadecan-14-Yl]Pentanamido]Ethane-1-Sulfonate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04181" sboTerm="SBO:0000627" id="R_MAR04181" name="Exchange of 2-[ (4R)-4-[ (1S, 2S, 5R, 7R, 10R, 11S, 14R, 15R)-2, 15-Dimethyl-5- (Sulfonatooxy)Tetracyclo[8.7.0.0^{2, 7}.0^{11, 15}]Heptadecan-14-Yl]Pentanamido]Ethane-1-Sulfonate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -400969,7 +400867,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04181">
+            <rdf:Description rdf:about="#R_MAR04181">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_HC02198_e"/>
@@ -400981,10 +400879,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02952e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02952e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR04195" sboTerm="SBO:0000627" id="MAR04195" name="Exchange of Reverse-Triiodthyronine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04195" sboTerm="SBO:0000627" id="R_MAR04195" name="Exchange of Reverse-Triiodthyronine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -400992,7 +400890,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04195">
+            <rdf:Description rdf:about="#R_MAR04195">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_HC02187_e"/>
@@ -401004,10 +400902,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02839e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02839e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR04203" sboTerm="SBO:0000627" id="MAR04203" name="Exchange of Prostaglandin A1" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04203" sboTerm="SBO:0000627" id="R_MAR04203" name="Exchange of Prostaglandin A1" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -401015,7 +400913,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04203">
+            <rdf:Description rdf:about="#R_MAR04203">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_HC02202_e"/>
@@ -401027,10 +400925,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02776e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02776e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR04213" sboTerm="SBO:0000627" id="MAR04213" name="Exchange of Prostaglandin-A2" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04213" sboTerm="SBO:0000627" id="R_MAR04213" name="Exchange of Prostaglandin-A2" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -401038,7 +400936,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04213">
+            <rdf:Description rdf:about="#R_MAR04213">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_HC02203_e"/>
@@ -401050,10 +400948,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02777e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02777e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR04215" sboTerm="SBO:0000627" id="MAR04215" name="Exchange of Prostaglandin-B1" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04215" sboTerm="SBO:0000627" id="R_MAR04215" name="Exchange of Prostaglandin-B1" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -401061,7 +400959,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04215">
+            <rdf:Description rdf:about="#R_MAR04215">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_HC02204_e"/>
@@ -401073,10 +400971,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02778e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02778e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR04217" sboTerm="SBO:0000627" id="MAR04217" name="Exchange of Prostaglandin-B2" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04217" sboTerm="SBO:0000627" id="R_MAR04217" name="Exchange of Prostaglandin-B2" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -401084,7 +400982,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04217">
+            <rdf:Description rdf:about="#R_MAR04217">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_HC02205_e"/>
@@ -401096,10 +400994,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02779e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02779e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR04221" sboTerm="SBO:0000627" id="MAR04221" name="Exchange of Prostaglandin C1" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04221" sboTerm="SBO:0000627" id="R_MAR04221" name="Exchange of Prostaglandin C1" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -401107,7 +401005,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04221">
+            <rdf:Description rdf:about="#R_MAR04221">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_HC02206_e"/>
@@ -401119,10 +401017,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02780e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02780e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR04223" sboTerm="SBO:0000627" id="MAR04223" name="Exchange of Prostaglandin-C2" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04223" sboTerm="SBO:0000627" id="R_MAR04223" name="Exchange of Prostaglandin-C2" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -401130,7 +401028,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04223">
+            <rdf:Description rdf:about="#R_MAR04223">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_HC02207_e"/>
@@ -401142,10 +401040,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02781e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02781e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR04226" sboTerm="SBO:0000627" id="MAR04226" name="Exchange of Prostaglandin-D1" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04226" sboTerm="SBO:0000627" id="R_MAR04226" name="Exchange of Prostaglandin-D1" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -401153,7 +401051,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04226">
+            <rdf:Description rdf:about="#R_MAR04226">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/EX_HC02208[e]"/>
@@ -401163,10 +401061,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02782e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02782e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR04229" sboTerm="SBO:0000627" id="MAR04229" name="Exchange of Prostaglandin-D3" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04229" sboTerm="SBO:0000627" id="R_MAR04229" name="Exchange of Prostaglandin-D3" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -401174,7 +401072,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04229">
+            <rdf:Description rdf:about="#R_MAR04229">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/EX_HC02210[e]"/>
@@ -401184,10 +401082,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02784e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02784e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR04230" sboTerm="SBO:0000627" id="MAR04230" name="Exchange of Prostaglandin-E3" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04230" sboTerm="SBO:0000627" id="R_MAR04230" name="Exchange of Prostaglandin-E3" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -401195,7 +401093,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04230">
+            <rdf:Description rdf:about="#R_MAR04230">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_HC02213_e"/>
@@ -401207,10 +401105,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02787e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02787e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR04234" sboTerm="SBO:0000627" id="MAR04234" name="Exchange of Prostaglandin-F1Alpha" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04234" sboTerm="SBO:0000627" id="R_MAR04234" name="Exchange of Prostaglandin-F1Alpha" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -401218,7 +401116,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04234">
+            <rdf:Description rdf:about="#R_MAR04234">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/EX_HC02214[e]"/>
@@ -401228,10 +401126,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02788e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02788e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR04236" sboTerm="SBO:0000627" id="MAR04236" name="Exchange of Prostaglandin-F2Beta" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04236" sboTerm="SBO:0000627" id="R_MAR04236" name="Exchange of Prostaglandin-F2Beta" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -401239,7 +401137,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04236">
+            <rdf:Description rdf:about="#R_MAR04236">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/EX_HC02216[e]"/>
@@ -401249,10 +401147,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02790e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02790e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR04238" sboTerm="SBO:0000627" id="MAR04238" name="Exchange of Prostaglandin-G2" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04238" sboTerm="SBO:0000627" id="R_MAR04238" name="Exchange of Prostaglandin-G2" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -401260,7 +401158,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04238">
+            <rdf:Description rdf:about="#R_MAR04238">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_HC02217_e"/>
@@ -401272,10 +401170,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02792e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02792e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR04240" sboTerm="SBO:0000627" id="MAR04240" name="Exchange of Malonyl Coenzyme A" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04240" sboTerm="SBO:0000627" id="R_MAR04240" name="Exchange of Malonyl Coenzyme A" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -401283,7 +401181,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04240">
+            <rdf:Description rdf:about="#R_MAR04240">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_malcoa_e"/>
@@ -401295,10 +401193,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02444e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02444e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR04247" sboTerm="SBO:0000627" id="MAR04247" name="Exchange of Arachidyl Coenzyme A" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04247" sboTerm="SBO:0000627" id="R_MAR04247" name="Exchange of Arachidyl Coenzyme A" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -401306,7 +401204,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04247">
+            <rdf:Description rdf:about="#R_MAR04247">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_arachcoa_e"/>
@@ -401318,10 +401216,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01773e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01773e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR04256" sboTerm="SBO:0000627" id="MAR04256" name="Exchange of Coenzyme A" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04256" sboTerm="SBO:0000627" id="R_MAR04256" name="Exchange of Coenzyme A" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -401329,7 +401227,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04256">
+            <rdf:Description rdf:about="#R_MAR04256">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_coa_e"/>
@@ -401341,10 +401239,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR04258" sboTerm="SBO:0000627" id="MAR04258" name="Exchange of 3-Oxodocosanoyl Coenzyme A" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04258" sboTerm="SBO:0000627" id="R_MAR04258" name="Exchange of 3-Oxodocosanoyl Coenzyme A" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -401352,7 +401250,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04258">
+            <rdf:Description rdf:about="#R_MAR04258">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_CE2250_e"/>
@@ -401364,10 +401262,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00866e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00866e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR04272" sboTerm="SBO:0000627" id="MAR04272" name="Exchange of Spermine Monoaldehyde" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04272" sboTerm="SBO:0000627" id="R_MAR04272" name="Exchange of Spermine Monoaldehyde" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -401375,7 +401273,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04272">
+            <rdf:Description rdf:about="#R_MAR04272">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_CE1935_e"/>
@@ -401387,10 +401285,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02925e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02925e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR04273" sboTerm="SBO:0000627" id="MAR04273" name="Exchange of Spermidine Monoaldehyde 2" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04273" sboTerm="SBO:0000627" id="R_MAR04273" name="Exchange of Spermidine Monoaldehyde 2" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -401398,7 +401296,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04273">
+            <rdf:Description rdf:about="#R_MAR04273">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_CE1940_e"/>
@@ -401410,10 +401308,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02922e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02922e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR04286" sboTerm="SBO:0000627" id="MAR04286" name="Exchange of Spermidine Dialdehyde" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04286" sboTerm="SBO:0000627" id="R_MAR04286" name="Exchange of Spermidine Dialdehyde" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -401421,7 +401319,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04286">
+            <rdf:Description rdf:about="#R_MAR04286">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_CE1943_e"/>
@@ -401433,10 +401331,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02920e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02920e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR04289" sboTerm="SBO:0000627" id="MAR04289" name="Exchange of Hypothiocyanite" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04289" sboTerm="SBO:0000627" id="R_MAR04289" name="Exchange of Hypothiocyanite" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -401444,7 +401342,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04289">
+            <rdf:Description rdf:about="#R_MAR04289">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/EX_CE2011[e]"/>
@@ -401454,10 +401352,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02158e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02158e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR04292" sboTerm="SBO:0000627" id="MAR04292" name="Exchange of Spermidine Monoaldehyde 1" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04292" sboTerm="SBO:0000627" id="R_MAR04292" name="Exchange of Spermidine Monoaldehyde 1" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -401465,7 +401363,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04292">
+            <rdf:Description rdf:about="#R_MAR04292">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_CE1939_e"/>
@@ -401477,10 +401375,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02921e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02921e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR04293" sboTerm="SBO:0000627" id="MAR04293" name="Exchange of Maltopentaose" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04293" sboTerm="SBO:0000627" id="R_MAR04293" name="Exchange of Maltopentaose" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -401488,7 +401386,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04293">
+            <rdf:Description rdf:about="#R_MAR04293">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_maltpt_e"/>
@@ -401502,10 +401400,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02449e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02449e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR04294" sboTerm="SBO:0000627" id="MAR04294" name="Exchange of Beta-Casomorphin" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04294" sboTerm="SBO:0000627" id="R_MAR04294" name="Exchange of Beta-Casomorphin" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -401513,7 +401411,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04294">
+            <rdf:Description rdf:about="#R_MAR04294">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_CE2915_e"/>
@@ -401525,10 +401423,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01387e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01387e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR04298" sboTerm="SBO:0000627" id="MAR04298" name="Exchange of Beta-Casomorphin (1-6)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04298" sboTerm="SBO:0000627" id="R_MAR04298" name="Exchange of Beta-Casomorphin (1-6)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -401536,7 +401434,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04298">
+            <rdf:Description rdf:about="#R_MAR04298">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_CE4722_e"/>
@@ -401548,10 +401446,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01386e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01386e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR04305" sboTerm="SBO:0000627" id="MAR04305" name="Exchange of Neocasomorphin" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04305" sboTerm="SBO:0000627" id="R_MAR04305" name="Exchange of Neocasomorphin" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -401559,7 +401457,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04305">
+            <rdf:Description rdf:about="#R_MAR04305">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_CE2916_e"/>
@@ -401571,10 +401469,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02563e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02563e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR04307" sboTerm="SBO:0000627" id="MAR04307" name="Exchange of Neocasomorphin (1-5)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04307" sboTerm="SBO:0000627" id="R_MAR04307" name="Exchange of Neocasomorphin (1-5)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -401582,7 +401480,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04307">
+            <rdf:Description rdf:about="#R_MAR04307">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_CE4723_e"/>
@@ -401594,10 +401492,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02562e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02562e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR04309" sboTerm="SBO:0000627" id="MAR04309" name="Exchange of Apelin-13" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04309" sboTerm="SBO:0000627" id="R_MAR04309" name="Exchange of Apelin-13" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -401605,7 +401503,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04309">
+            <rdf:Description rdf:about="#R_MAR04309">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_CE2917_e"/>
@@ -401617,10 +401515,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01348e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01348e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR04311" sboTerm="SBO:0000627" id="MAR04311" name="Exchange of Apelin (1-12)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04311" sboTerm="SBO:0000627" id="R_MAR04311" name="Exchange of Apelin (1-12)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -401628,7 +401526,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04311">
+            <rdf:Description rdf:about="#R_MAR04311">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_CE4724_e"/>
@@ -401640,10 +401538,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01347e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01347e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR04322" sboTerm="SBO:0000627" id="MAR04322" name="Exchange of Maltoheptaose" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04322" sboTerm="SBO:0000627" id="R_MAR04322" name="Exchange of Maltoheptaose" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -401651,7 +401549,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04322">
+            <rdf:Description rdf:about="#R_MAR04322">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_malthp_e"/>
@@ -401665,10 +401563,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02446e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02446e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR04325" sboTerm="SBO:0000627" id="MAR04325" name="Exchange of Maltononaose" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04325" sboTerm="SBO:0000627" id="R_MAR04325" name="Exchange of Maltononaose" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -401676,7 +401574,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04325">
+            <rdf:Description rdf:about="#R_MAR04325">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_CE2838_e"/>
@@ -401688,10 +401586,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02448e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02448e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR04327" sboTerm="SBO:0000627" id="MAR04327" name="Exchange of Cyanosulfurous Acid Anion" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04327" sboTerm="SBO:0000627" id="R_MAR04327" name="Exchange of Cyanosulfurous Acid Anion" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -401699,7 +401597,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04327">
+            <rdf:Description rdf:about="#R_MAR04327">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_CE1950_e"/>
@@ -401710,10 +401608,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03330e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03330e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR04334" sboTerm="SBO:0000627" id="MAR04334" name="Exchange of Cyanate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04334" sboTerm="SBO:0000627" id="R_MAR04334" name="Exchange of Cyanate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -401721,7 +401619,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04334">
+            <rdf:Description rdf:about="#R_MAR04334">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_cynt_e"/>
@@ -401733,10 +401631,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03525e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03525e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR04337" sboTerm="SBO:0000627" id="MAR04337" name="Exchange of 2&apos;,3&apos;-Cyclic UMP" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04337" sboTerm="SBO:0000627" id="R_MAR04337" name="Exchange of 2&apos;,3&apos;-Cyclic UMP" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -401744,7 +401642,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04337">
+            <rdf:Description rdf:about="#R_MAR04337">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_23cump_e"/>
@@ -401756,10 +401654,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00570e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00570e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR04339" sboTerm="SBO:0000627" id="MAR04339" name="Exchange of 3&apos;-UMP" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04339" sboTerm="SBO:0000627" id="R_MAR04339" name="Exchange of 3&apos;-UMP" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -401767,7 +401665,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04339">
+            <rdf:Description rdf:about="#R_MAR04339">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_3ump_e"/>
@@ -401779,10 +401677,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00921e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00921e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR04341" sboTerm="SBO:0000627" id="MAR04341" name="Exchange of Kinetensin" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04341" sboTerm="SBO:0000627" id="R_MAR04341" name="Exchange of Kinetensin" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -401790,7 +401688,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04341">
+            <rdf:Description rdf:about="#R_MAR04341">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_CE5786_e"/>
@@ -401802,10 +401700,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02318e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02318e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR04349" sboTerm="SBO:0000627" id="MAR04349" name="Exchange of Kinetensin 1-7" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04349" sboTerm="SBO:0000627" id="R_MAR04349" name="Exchange of Kinetensin 1-7" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -401813,7 +401711,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04349">
+            <rdf:Description rdf:about="#R_MAR04349">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_CE5788_e"/>
@@ -401825,10 +401723,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02315e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02315e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR04353" sboTerm="SBO:0000627" id="MAR04353" name="Exchange of Kinetensin 1-8" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04353" sboTerm="SBO:0000627" id="R_MAR04353" name="Exchange of Kinetensin 1-8" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -401836,7 +401734,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04353">
+            <rdf:Description rdf:about="#R_MAR04353">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_CE5789_e"/>
@@ -401848,10 +401746,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02316e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02316e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR04357" sboTerm="SBO:0000627" id="MAR04357" name="Exchange of Neuromedin N" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04357" sboTerm="SBO:0000627" id="R_MAR04357" name="Exchange of Neuromedin N" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -401859,7 +401757,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04357">
+            <rdf:Description rdf:about="#R_MAR04357">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_CE5797_e"/>
@@ -401871,10 +401769,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02570e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02570e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR04359" sboTerm="SBO:0000627" id="MAR04359" name="Exchange of Neuromedin N (1-4)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04359" sboTerm="SBO:0000627" id="R_MAR04359" name="Exchange of Neuromedin N (1-4)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -401882,7 +401780,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04359">
+            <rdf:Description rdf:about="#R_MAR04359">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_CE5798_e"/>
@@ -401894,10 +401792,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02569e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02569e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR04361" sboTerm="SBO:0000627" id="MAR04361" name="Exchange of Kinetensin 1-3" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04361" sboTerm="SBO:0000627" id="R_MAR04361" name="Exchange of Kinetensin 1-3" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -401905,7 +401803,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04361">
+            <rdf:Description rdf:about="#R_MAR04361">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_CE5787_e"/>
@@ -401916,10 +401814,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02314e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02314e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR04362" sboTerm="SBO:0000627" id="MAR04362" name="Exchange of Kinetensin 4-8" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04362" sboTerm="SBO:0000627" id="R_MAR04362" name="Exchange of Kinetensin 4-8" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -401927,7 +401825,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04362">
+            <rdf:Description rdf:about="#R_MAR04362">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_CE5791_e"/>
@@ -401938,10 +401836,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02317e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02317e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR04364" sboTerm="SBO:0000627" id="MAR04364" name="Exchange of N-Acetyl-Seryl-Aspartyl-Lysyl-Proline" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04364" sboTerm="SBO:0000627" id="R_MAR04364" name="Exchange of N-Acetyl-Seryl-Aspartyl-Lysyl-Proline" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -401949,7 +401847,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04364">
+            <rdf:Description rdf:about="#R_MAR04364">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_CE5867_e"/>
@@ -401961,10 +401859,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02551e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02551e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR04366" sboTerm="SBO:0000627" id="MAR04366" name="Exchange of N-Acetyl-Seryl-Aspartate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04366" sboTerm="SBO:0000627" id="R_MAR04366" name="Exchange of N-Acetyl-Seryl-Aspartate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -401972,7 +401870,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04366">
+            <rdf:Description rdf:about="#R_MAR04366">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_CE5868_e"/>
@@ -401984,10 +401882,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02550e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02550e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR04369" sboTerm="SBO:0000627" id="MAR04369" name="Exchange of Lysyl-Proline" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04369" sboTerm="SBO:0000627" id="R_MAR04369" name="Exchange of Lysyl-Proline" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -401995,7 +401893,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04369">
+            <rdf:Description rdf:about="#R_MAR04369">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_CE5869_e"/>
@@ -402007,10 +401905,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02429e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02429e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR04374" sboTerm="SBO:0000627" id="MAR04374" name="Exchange of Hypochlorous Acid" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04374" sboTerm="SBO:0000627" id="R_MAR04374" name="Exchange of Hypochlorous Acid" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -402018,7 +401916,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04374">
+            <rdf:Description rdf:about="#R_MAR04374">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_CE4633_e"/>
@@ -402030,10 +401928,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02156e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02156e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR04376" sboTerm="SBO:0000627" id="MAR04376" name="Exchange of Nitryl Chloride" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04376" sboTerm="SBO:0000627" id="R_MAR04376" name="Exchange of Nitryl Chloride" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -402041,7 +401939,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04376">
+            <rdf:Description rdf:about="#R_MAR04376">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_CE4881_e"/>
@@ -402053,10 +401951,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02591e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02591e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR04378" sboTerm="SBO:0000627" id="MAR04378" name="Exchange of Gama-Cehc-Glucuronide" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04378" sboTerm="SBO:0000627" id="R_MAR04378" name="Exchange of Gama-Cehc-Glucuronide" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -402064,7 +401962,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04378">
+            <rdf:Description rdf:about="#R_MAR04378">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_CE5854_e"/>
@@ -402076,10 +401974,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01924e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01924e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR04380" sboTerm="SBO:0000627" id="MAR04380" name="Exchange of Gama-Carboxyethyl-Hydroxychroman" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04380" sboTerm="SBO:0000627" id="R_MAR04380" name="Exchange of Gama-Carboxyethyl-Hydroxychroman" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -402087,7 +401985,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04380">
+            <rdf:Description rdf:about="#R_MAR04380">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_CE1926_e"/>
@@ -402099,10 +401997,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01923e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01923e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR04382" sboTerm="SBO:0000627" id="MAR04382" name="Exchange of UDP-D-Galactose" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04382" sboTerm="SBO:0000627" id="R_MAR04382" name="Exchange of UDP-D-Galactose" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -402110,7 +402008,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04382">
+            <rdf:Description rdf:about="#R_MAR04382">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_udpgal_e"/>
@@ -402122,10 +402020,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03107e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03107e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR04384" sboTerm="SBO:0000627" id="MAR04384" name="Exchange of N-Acylsphingosine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04384" sboTerm="SBO:0000627" id="R_MAR04384" name="Exchange of N-Acylsphingosine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -402133,7 +402031,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04384">
+            <rdf:Description rdf:about="#R_MAR04384">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_crm_hs_e"/>
@@ -402144,10 +402042,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01430e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01430e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR04389" sboTerm="SBO:0000627" id="MAR04389" name="Exchange of D-Galactosyl-N-Acylsphingosine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04389" sboTerm="SBO:0000627" id="R_MAR04389" name="Exchange of D-Galactosyl-N-Acylsphingosine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -402155,7 +402053,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04389">
+            <rdf:Description rdf:about="#R_MAR04389">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_galside_hs_e"/>
@@ -402166,10 +402064,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01679e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01679e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR04392" sboTerm="SBO:0000627" id="MAR04392" name="Exchange of Alloxan" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04392" sboTerm="SBO:0000627" id="R_MAR04392" name="Exchange of Alloxan" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -402177,7 +402075,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04392">
+            <rdf:Description rdf:about="#R_MAR04392">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_CE0074_e"/>
@@ -402189,10 +402087,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01315e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01315e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR04395" sboTerm="SBO:0000627" id="MAR04395" name="Exchange of CDP-Ethanolamine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04395" sboTerm="SBO:0000627" id="R_MAR04395" name="Exchange of CDP-Ethanolamine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -402200,7 +402098,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04395">
+            <rdf:Description rdf:about="#R_MAR04395">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_cdpea_e"/>
@@ -402211,10 +402109,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01428e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01428e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR04397" sboTerm="SBO:0000627" id="MAR04397" name="Exchange of 1, 2-Diacyl-Sn-Glycerol (Didodecanoyl, N-C12:0)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04397" sboTerm="SBO:0000627" id="R_MAR04397" name="Exchange of 1, 2-Diacyl-Sn-Glycerol (Didodecanoyl, N-C12:0)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -402222,7 +402120,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04397">
+            <rdf:Description rdf:about="#R_MAR04397">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_12dgr120_e"/>
@@ -402233,10 +402131,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00475e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00475e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR04405" sboTerm="SBO:0000627" id="MAR04405" name="Exchange of Alpha-Cehc-Glucuronide" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04405" sboTerm="SBO:0000627" id="R_MAR04405" name="Exchange of Alpha-Cehc-Glucuronide" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -402244,7 +402142,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04405">
+            <rdf:Description rdf:about="#R_MAR04405">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_CE5853_e"/>
@@ -402256,10 +402154,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01321e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01321e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR04407" sboTerm="SBO:0000627" id="MAR04407" name="Exchange of 3&apos;-Carboxy-Alpha-Chromanol" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04407" sboTerm="SBO:0000627" id="R_MAR04407" name="Exchange of 3&apos;-Carboxy-Alpha-Chromanol" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -402267,7 +402165,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04407">
+            <rdf:Description rdf:about="#R_MAR04407">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_CE1925_e"/>
@@ -402279,10 +402177,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00766e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00766e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR04409" sboTerm="SBO:0000627" id="MAR04409" name="Exchange of (5Z, 9E, 14Z)- (8Xi, 11R, 12S)-11, 12-Epoxy-8-Hydroxyicosa-5, 9, 14-Trienoate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04409" sboTerm="SBO:0000627" id="R_MAR04409" name="Exchange of (5Z, 9E, 14Z)- (8Xi, 11R, 12S)-11, 12-Epoxy-8-Hydroxyicosa-5, 9, 14-Trienoate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -402290,7 +402188,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04409">
+            <rdf:Description rdf:about="#R_MAR04409">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_C04849_e"/>
@@ -402302,10 +402200,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02096e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02096e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR04411" sboTerm="SBO:0000185" id="MAR04411" name="Phosphate Transport In/Out via Na+ Symporter" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04411" sboTerm="SBO:0000185" id="R_MAR04411" name="Phosphate Transport In/Out via Na+ Symporter" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -402314,7 +402212,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04411">
+            <rdf:Description rdf:about="#R_MAR04411">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PIt8"/>
@@ -402326,15 +402224,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02519e" stoichiometry="1.5" constant="true"/>
-          <speciesReference species="MAM02751e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1.5" constant="true"/>
+          <speciesReference species="M_MAM02751e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02519c" stoichiometry="1.5" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1.5" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR04413" sboTerm="SBO:0000629" id="MAR04413" name="Generic Human Biomass Reaction" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB2N0">
+      <reaction metaid="R_MAR04413" sboTerm="SBO:0000629" id="R_MAR04413" name="Generic Human Biomass Reaction" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB2N0">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -402342,7 +402240,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#meta_MAR04413">
+            <rdf:Description rdf:about="#meta_R_MAR04413">
               <bqbiol:is>
                 <rdf:Bag/>
               </bqbiol:is>
@@ -402350,53 +402248,53 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01307c" stoichiometry="0.505626" constant="true"/>
-          <speciesReference species="MAM01365c" stoichiometry="0.35926" constant="true"/>
-          <speciesReference species="MAM01369c" stoichiometry="0.279425" constant="true"/>
-          <speciesReference species="MAM01370c" stoichiometry="0.352607" constant="true"/>
-          <speciesReference species="MAM01371c" stoichiometry="20.704451" constant="true"/>
-          <speciesReference species="MAM01450c" stoichiometry="0.020401" constant="true"/>
-          <speciesReference species="MAM01589c" stoichiometry="0.011658" constant="true"/>
-          <speciesReference species="MAM01623c" stoichiometry="0.039036" constant="true"/>
-          <speciesReference species="MAM01628c" stoichiometry="0.046571" constant="true"/>
-          <speciesReference species="MAM01642n" stoichiometry="0.013183" constant="true"/>
-          <speciesReference species="MAM01645n" stoichiometry="0.009442" constant="true"/>
-          <speciesReference species="MAM01688n" stoichiometry="0.009898" constant="true"/>
-          <speciesReference species="MAM01753n" stoichiometry="0.013091" constant="true"/>
-          <speciesReference species="MAM01968c" stoichiometry="0.275194" constant="true"/>
-          <speciesReference species="MAM01974c" stoichiometry="0.385872" constant="true"/>
-          <speciesReference species="MAM01975c" stoichiometry="0.325996" constant="true"/>
-          <speciesReference species="MAM01986c" stoichiometry="0.538891" constant="true"/>
-          <speciesReference species="MAM02034c" stoichiometry="0.036117" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="20.650823" constant="true"/>
-          <speciesReference species="MAM02125c" stoichiometry="0.126406" constant="true"/>
-          <speciesReference species="MAM02184c" stoichiometry="0.286078" constant="true"/>
-          <speciesReference species="MAM02360c" stoichiometry="0.545544" constant="true"/>
-          <speciesReference species="MAM02426c" stoichiometry="0.592114" constant="true"/>
-          <speciesReference species="MAM02471c" stoichiometry="0.153018" constant="true"/>
-          <speciesReference species="MAM02684c" stoichiometry="0.154463" constant="true"/>
-          <speciesReference species="MAM02685c" stoichiometry="0.055374" constant="true"/>
-          <speciesReference species="MAM02724c" stoichiometry="0.259466" constant="true"/>
-          <speciesReference species="MAM02750c" stoichiometry="0.023315" constant="true"/>
-          <speciesReference species="MAM02770c" stoichiometry="0.412484" constant="true"/>
-          <speciesReference species="MAM02808c" stoichiometry="0.005829" constant="true"/>
-          <speciesReference species="MAM02896c" stoichiometry="0.392525" constant="true"/>
-          <speciesReference species="MAM02908c" stoichiometry="0.017486" constant="true"/>
-          <speciesReference species="MAM02993c" stoichiometry="0.31269" constant="true"/>
-          <speciesReference species="MAM03089c" stoichiometry="0.013306" constant="true"/>
-          <speciesReference species="MAM03101c" stoichiometry="0.159671" constant="true"/>
-          <speciesReference species="MAM03130c" stoichiometry="0.053446" constant="true"/>
-          <speciesReference species="MAM03135c" stoichiometry="0.352607" constant="true"/>
-          <speciesReference species="MAM02715c" stoichiometry="0.002914" constant="true"/>
-        </listOfReactants>
-        <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="20.650823" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="20.650823" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="20.650823" constant="true"/>
-          <speciesReference species="MAM03970c" stoichiometry="1" constant="true"/>
-        </listOfProducts>
-      </reaction>
-      <reaction metaid="MAR04438" sboTerm="SBO:0000185" id="MAR04438" name="Transport of 2-Methylcrotonoyl Coenzyme A into Cytosol" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+          <speciesReference species="M_MAM01307c" stoichiometry="0.505626" constant="true"/>
+          <speciesReference species="M_MAM01365c" stoichiometry="0.35926" constant="true"/>
+          <speciesReference species="M_MAM01369c" stoichiometry="0.279425" constant="true"/>
+          <speciesReference species="M_MAM01370c" stoichiometry="0.352607" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="20.704451" constant="true"/>
+          <speciesReference species="M_MAM01450c" stoichiometry="0.020401" constant="true"/>
+          <speciesReference species="M_MAM01589c" stoichiometry="0.011658" constant="true"/>
+          <speciesReference species="M_MAM01623c" stoichiometry="0.039036" constant="true"/>
+          <speciesReference species="M_MAM01628c" stoichiometry="0.046571" constant="true"/>
+          <speciesReference species="M_MAM01642n" stoichiometry="0.013183" constant="true"/>
+          <speciesReference species="M_MAM01645n" stoichiometry="0.009442" constant="true"/>
+          <speciesReference species="M_MAM01688n" stoichiometry="0.009898" constant="true"/>
+          <speciesReference species="M_MAM01753n" stoichiometry="0.013091" constant="true"/>
+          <speciesReference species="M_MAM01968c" stoichiometry="0.275194" constant="true"/>
+          <speciesReference species="M_MAM01974c" stoichiometry="0.385872" constant="true"/>
+          <speciesReference species="M_MAM01975c" stoichiometry="0.325996" constant="true"/>
+          <speciesReference species="M_MAM01986c" stoichiometry="0.538891" constant="true"/>
+          <speciesReference species="M_MAM02034c" stoichiometry="0.036117" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="20.650823" constant="true"/>
+          <speciesReference species="M_MAM02125c" stoichiometry="0.126406" constant="true"/>
+          <speciesReference species="M_MAM02184c" stoichiometry="0.286078" constant="true"/>
+          <speciesReference species="M_MAM02360c" stoichiometry="0.545544" constant="true"/>
+          <speciesReference species="M_MAM02426c" stoichiometry="0.592114" constant="true"/>
+          <speciesReference species="M_MAM02471c" stoichiometry="0.153018" constant="true"/>
+          <speciesReference species="M_MAM02684c" stoichiometry="0.154463" constant="true"/>
+          <speciesReference species="M_MAM02685c" stoichiometry="0.055374" constant="true"/>
+          <speciesReference species="M_MAM02724c" stoichiometry="0.259466" constant="true"/>
+          <speciesReference species="M_MAM02750c" stoichiometry="0.023315" constant="true"/>
+          <speciesReference species="M_MAM02770c" stoichiometry="0.412484" constant="true"/>
+          <speciesReference species="M_MAM02808c" stoichiometry="0.005829" constant="true"/>
+          <speciesReference species="M_MAM02896c" stoichiometry="0.392525" constant="true"/>
+          <speciesReference species="M_MAM02908c" stoichiometry="0.017486" constant="true"/>
+          <speciesReference species="M_MAM02993c" stoichiometry="0.31269" constant="true"/>
+          <speciesReference species="M_MAM03089c" stoichiometry="0.013306" constant="true"/>
+          <speciesReference species="M_MAM03101c" stoichiometry="0.159671" constant="true"/>
+          <speciesReference species="M_MAM03130c" stoichiometry="0.053446" constant="true"/>
+          <speciesReference species="M_MAM03135c" stoichiometry="0.352607" constant="true"/>
+          <speciesReference species="M_MAM02715c" stoichiometry="0.002914" constant="true"/>
+        </listOfReactants>
+        <listOfProducts>
+          <speciesReference species="M_MAM01285c" stoichiometry="20.650823" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="20.650823" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="20.650823" constant="true"/>
+          <speciesReference species="M_MAM03970c" stoichiometry="1" constant="true"/>
+        </listOfProducts>
+      </reaction>
+      <reaction metaid="R_MAR04438" sboTerm="SBO:0000185" id="R_MAR04438" name="Transport of 2-Methylcrotonoyl Coenzyme A into Cytosol" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -402405,7 +402303,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04438">
+            <rdf:Description rdf:about="#R_MAR04438">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/2MB2COAc"/>
@@ -402417,16 +402315,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02999m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02999m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02999c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02999c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Acbp1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04439" sboTerm="SBO:0000185" id="MAR04439" name="Transport of (R)-3-Hydroxybutanoyl Coenzyme A into Cytosol" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04439" sboTerm="SBO:0000185" id="R_MAR04439" name="Transport of (R)-3-Hydroxybutanoyl Coenzyme A into Cytosol" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -402435,7 +402333,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04439">
+            <rdf:Description rdf:about="#R_MAR04439">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/3HBCOARc"/>
@@ -402447,16 +402345,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00159m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00159m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00159c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00159c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Acbp1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04441" sboTerm="SBO:0000176" id="MAR04441" name="Activation of Adipic Acid for Formation of Adipoyl Carnitine" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04441" sboTerm="SBO:0000176" id="R_MAR04441" name="Activation of Adipic Acid for Formation of Adipoyl Carnitine" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -402465,7 +402363,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04441">
+            <rdf:Description rdf:about="#R_MAR04441">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ADPACDAc"/>
@@ -402477,17 +402375,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03408c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03408c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01334c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03409c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03409c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR04443" sboTerm="SBO:0000185" id="MAR04443" name="Transport into Cytosol (Diffusion)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04443" sboTerm="SBO:0000185" id="R_MAR04443" name="Transport into Cytosol (Diffusion)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -402496,7 +402394,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04443">
+            <rdf:Description rdf:about="#R_MAR04443">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ADPACTD"/>
@@ -402508,13 +402406,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03408x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03408x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03408c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03408c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR04445" sboTerm="SBO:0000176" id="MAR04445" name="Production of Adipoyl Carnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04445" sboTerm="SBO:0000176" id="R_MAR04445" name="Production of Adipoyl Carnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -402523,7 +402421,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04445">
+            <rdf:Description rdf:about="#R_MAR04445">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ADPCOACROT"/>
@@ -402535,45 +402433,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02348x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03409x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03409x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01597x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03499x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03499x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CROT"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04455" sboTerm="SBO:0000185" id="MAR04455" name="Transport of 3-Hydroxy Butyryl Carnitine into Extra Cellular Space" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
-        <notes>
-          <body xmlns="http://www.w3.org/1999/xhtml">
-            <p>Confidence Level: 0</p>
-            <p>AUTHORS: PMID:20157782;PMID:17347912;PMID:11489939</p>
-          </body>
-        </notes>
-        <annotation>
-          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04455">
-              <bqbiol:is>
-                <rdf:Bag>
-                  <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/BCRNe"/>
-                  <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR96226"/>
-                  <rdf:li rdf:resource="https://identifiers.org/vmhreaction/BCRNe"/>
-                </rdf:Bag>
-              </bqbiol:is>
-            </rdf:Description>
-          </rdf:RDF>
-        </annotation>
-        <listOfReactants>
-          <speciesReference species="MAM03201c" stoichiometry="1" constant="true"/>
-        </listOfReactants>
-        <listOfProducts>
-          <speciesReference species="MAM03201e" stoichiometry="1" constant="true"/>
-        </listOfProducts>
-      </reaction>
-      <reaction metaid="MAR04457" sboTerm="SBO:0000176" id="MAR04457" name="Production of Decanoylcarnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04457" sboTerm="SBO:0000176" id="R_MAR04457" name="Production of Decanoylcarnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -402582,7 +402453,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04457">
+            <rdf:Description rdf:about="#R_MAR04457">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/C100CPT1"/>
@@ -402593,18 +402464,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01650c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01650c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03488c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03488c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="whd"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04462" sboTerm="SBO:0000176" id="MAR04462" name="Production of Decenoylcarnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04462" sboTerm="SBO:0000176" id="R_MAR04462" name="Production of Decenoylcarnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -402613,7 +402484,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04462">
+            <rdf:Description rdf:about="#R_MAR04462">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/C101CPT1"/>
@@ -402624,44 +402495,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03486c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03486c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03487c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03487c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="whd"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04463" sboTerm="SBO:0000185" id="MAR04463" name="Transport of Decenoyl Carnitine into Extra Cellular Space" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
-        <notes>
-          <body xmlns="http://www.w3.org/1999/xhtml">
-            <p>Confidence Level: 0</p>
-            <p>AUTHORS: PMID:19720082</p>
-          </body>
-        </notes>
-        <annotation>
-          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04463">
-              <bqbiol:is>
-                <rdf:Bag>
-                  <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/C101CRNe"/>
-                  <rdf:li rdf:resource="https://identifiers.org/vmhreaction/C101CRNe"/>
-                </rdf:Bag>
-              </bqbiol:is>
-            </rdf:Description>
-          </rdf:RDF>
-        </annotation>
-        <listOfReactants>
-          <speciesReference species="MAM03487c" stoichiometry="1" constant="true"/>
-        </listOfReactants>
-        <listOfProducts>
-          <speciesReference species="MAM03487e" stoichiometry="1" constant="true"/>
-        </listOfProducts>
-      </reaction>
-      <reaction metaid="MAR04475" sboTerm="SBO:0000176" id="MAR04475" name="Production of Decadienoylcarnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04475" sboTerm="SBO:0000176" id="R_MAR04475" name="Production of Decadienoylcarnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -402670,7 +402515,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04475">
+            <rdf:Description rdf:about="#R_MAR04475">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/C102CPT1"/>
@@ -402681,44 +402526,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03543c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03543c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03544c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03544c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="whd"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04478" sboTerm="SBO:0000185" id="MAR04478" name="Transport of Decanoyl Carnitine into Extra Cellular Space" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
-        <notes>
-          <body xmlns="http://www.w3.org/1999/xhtml">
-            <p>Confidence Level: 0</p>
-            <p>AUTHORS: PMID:19720082</p>
-          </body>
-        </notes>
-        <annotation>
-          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04478">
-              <bqbiol:is>
-                <rdf:Bag>
-                  <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/C10CRNe"/>
-                  <rdf:li rdf:resource="https://identifiers.org/vmhreaction/C10CRNe"/>
-                </rdf:Bag>
-              </bqbiol:is>
-            </rdf:Description>
-          </rdf:RDF>
-        </annotation>
-        <listOfReactants>
-          <speciesReference species="MAM03488c" stoichiometry="1" constant="true"/>
-        </listOfReactants>
-        <listOfProducts>
-          <speciesReference species="MAM03488e" stoichiometry="1" constant="true"/>
-        </listOfProducts>
-      </reaction>
-      <reaction metaid="MAR04479" sboTerm="SBO:0000185" id="MAR04479" name="Transport of Sebacoyl Carnitine into Cytosol" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04479" sboTerm="SBO:0000185" id="R_MAR04479" name="Transport of Sebacoyl Carnitine into Cytosol" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -402727,7 +402546,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04479">
+            <rdf:Description rdf:about="#R_MAR04479">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/C10DCCACT"/>
@@ -402739,16 +402558,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03489x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03489x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03489c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03489c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="colt"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04491" sboTerm="SBO:0000176" id="MAR04491" name="Production of Sebacoylcarnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04491" sboTerm="SBO:0000176" id="R_MAR04491" name="Production of Sebacoylcarnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -402758,7 +402577,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04491">
+            <rdf:Description rdf:about="#R_MAR04491">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/C10DCc"/>
@@ -402770,45 +402589,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03924c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03924c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03489c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03489c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="whd"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04502" sboTerm="SBO:0000185" id="MAR04502" name="Transport of Sebacoyl Carnitine into Extra Cellular Space" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
-        <notes>
-          <body xmlns="http://www.w3.org/1999/xhtml">
-            <p>Confidence Level: 0</p>
-            <p>AUTHORS: PMID:6959231;PMID:3119938</p>
-          </body>
-        </notes>
-        <annotation>
-          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04502">
-              <bqbiol:is>
-                <rdf:Bag>
-                  <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/C10DCe"/>
-                  <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR96374"/>
-                  <rdf:li rdf:resource="https://identifiers.org/vmhreaction/C10DCe"/>
-                </rdf:Bag>
-              </bqbiol:is>
-            </rdf:Description>
-          </rdf:RDF>
-        </annotation>
-        <listOfReactants>
-          <speciesReference species="MAM03489c" stoichiometry="1" constant="true"/>
-        </listOfReactants>
-        <listOfProducts>
-          <speciesReference species="MAM03489e" stoichiometry="1" constant="true"/>
-        </listOfProducts>
-      </reaction>
-      <reaction metaid="MAR04504" sboTerm="SBO:0000176" id="MAR04504" name="Production of 3-Ohdecanoylcarnitinec" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04504" sboTerm="SBO:0000176" id="R_MAR04504" name="Production of 3-Ohdecanoylcarnitinec" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -402817,7 +402609,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04504">
+            <rdf:Description rdf:about="#R_MAR04504">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/C10OHc"/>
@@ -402829,18 +402621,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00181c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00181c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03204c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03204c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="whd"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04506" sboTerm="SBO:0000176" id="MAR04506" name="Production of Dodecanoylcarnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04506" sboTerm="SBO:0000176" id="R_MAR04506" name="Production of Dodecanoylcarnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -402849,7 +402641,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04506">
+            <rdf:Description rdf:about="#R_MAR04506">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/C120CPT1"/>
@@ -402860,18 +402652,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02345c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02345c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03540c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03540c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="whd"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04508" sboTerm="SBO:0000176" id="MAR04508" name="Production of Dodecenoylcarnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04508" sboTerm="SBO:0000176" id="R_MAR04508" name="Production of Dodecenoylcarnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -402880,7 +402672,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04508">
+            <rdf:Description rdf:about="#R_MAR04508">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/C121CPT1"/>
@@ -402891,18 +402683,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00042c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00042c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03541c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03541c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="whd"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04511" sboTerm="SBO:0000176" id="MAR04511" name="Activation of Dodecanedioic Acid" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04511" sboTerm="SBO:0000176" id="R_MAR04511" name="Activation of Dodecanedioic Acid" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -402911,7 +402703,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04511">
+            <rdf:Description rdf:about="#R_MAR04511">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/C12DCACT"/>
@@ -402922,17 +402714,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03562c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03562c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01334c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03491c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03491c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR04515" sboTerm="SBO:0000185" id="MAR04515" name="Transport of Dodecanedioic Acid by Diffusion" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04515" sboTerm="SBO:0000185" id="R_MAR04515" name="Transport of Dodecanedioic Acid by Diffusion" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -402941,7 +402733,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04515">
+            <rdf:Description rdf:about="#R_MAR04515">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/C12DCTD"/>
@@ -402952,39 +402744,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03562x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03562x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03562c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03562c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR04517" sboTerm="SBO:0000185" id="MAR04517" name="Excretion of Dodecanedioyl Carnitine" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
-        <notes>
-          <body xmlns="http://www.w3.org/1999/xhtml">
-            <p>Confidence Level: 0</p>
-            <p>AUTHORS: PMID:16146704</p>
-          </body>
-        </notes>
-        <annotation>
-          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04517">
-              <bqbiol:is>
-                <rdf:Bag>
-                  <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/C12DCe"/>
-                  <rdf:li rdf:resource="https://identifiers.org/vmhreaction/C12DCe"/>
-                </rdf:Bag>
-              </bqbiol:is>
-            </rdf:Description>
-          </rdf:RDF>
-        </annotation>
-        <listOfReactants>
-          <speciesReference species="MAM03490c" stoichiometry="1" constant="true"/>
-        </listOfReactants>
-        <listOfProducts>
-          <speciesReference species="MAM03490e" stoichiometry="1" constant="true"/>
-        </listOfProducts>
-      </reaction>
-      <reaction metaid="MAR04522" sboTerm="SBO:0000176" id="MAR04522" name="Production of 3-Ohdodecanoylcarnitinec" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04522" sboTerm="SBO:0000176" id="R_MAR04522" name="Production of 3-Ohdodecanoylcarnitinec" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -402993,7 +402759,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04522">
+            <rdf:Description rdf:about="#R_MAR04522">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/C12OHc"/>
@@ -403005,18 +402771,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00174c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00174c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03202c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03202c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="whd"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04562" sboTerm="SBO:0000176" id="MAR04562" name="Production of Myristoylcarnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04562" sboTerm="SBO:0000176" id="R_MAR04562" name="Production of Myristoylcarnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -403025,7 +402791,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04562">
+            <rdf:Description rdf:about="#R_MAR04562">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/TTDCPT1"/>
@@ -403037,18 +402803,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02495c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02495c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02973c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02973c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="whd"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04566" sboTerm="SBO:0000185" id="MAR04566" name="Transport of 3-Hydroxytetradecenoyl Coenzyme A from Mitochondria into Cytosol" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04566" sboTerm="SBO:0000185" id="R_MAR04566" name="Transport of 3-Hydroxytetradecenoyl Coenzyme A from Mitochondria into Cytosol" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -403057,7 +402823,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04566">
+            <rdf:Description rdf:about="#R_MAR04566">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/C141ACBP"/>
@@ -403068,16 +402834,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03263m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03263m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03263c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03263c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Acbp1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04569" sboTerm="SBO:0000176" id="MAR04569" name="Production of Tetradecenoylcarnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04569" sboTerm="SBO:0000176" id="R_MAR04569" name="Production of Tetradecenoylcarnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -403086,7 +402852,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04569">
+            <rdf:Description rdf:about="#R_MAR04569">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/C141CPT1"/>
@@ -403097,18 +402863,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03979c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03979c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03980c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03980c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="whd"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04571" sboTerm="SBO:0000176" id="MAR04571" name="Production of 3-Hydroxytetradecenoyl Carnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04571" sboTerm="SBO:0000176" id="R_MAR04571" name="Production of 3-Hydroxytetradecenoyl Carnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -403117,7 +402883,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04571">
+            <rdf:Description rdf:about="#R_MAR04571">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/C141OHc"/>
@@ -403128,44 +402894,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03263c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03263c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03264c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03264c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="whd"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04576" sboTerm="SBO:0000185" id="MAR04576" name="Excretion of 3-Hydroxy Tetradecenoyl-7-Carnitine" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
-        <notes>
-          <body xmlns="http://www.w3.org/1999/xhtml">
-            <p>Confidence Level: 0</p>
-            <p>AUTHORS: PMID:21281499</p>
-          </body>
-        </notes>
-        <annotation>
-          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04576">
-              <bqbiol:is>
-                <rdf:Bag>
-                  <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/C141OHe"/>
-                  <rdf:li rdf:resource="https://identifiers.org/vmhreaction/C141OHe"/>
-                </rdf:Bag>
-              </bqbiol:is>
-            </rdf:Description>
-          </rdf:RDF>
-        </annotation>
-        <listOfReactants>
-          <speciesReference species="MAM03264c" stoichiometry="1" constant="true"/>
-        </listOfReactants>
-        <listOfProducts>
-          <speciesReference species="MAM03264e" stoichiometry="1" constant="true"/>
-        </listOfProducts>
-      </reaction>
-      <reaction metaid="MAR04578" sboTerm="SBO:0000185" id="MAR04578" name="Transport of 3-Hydroxytetradeca Dienoyl Coenzyme A from Mitochondria into Cytosol" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04578" sboTerm="SBO:0000185" id="R_MAR04578" name="Transport of 3-Hydroxytetradeca Dienoyl Coenzyme A from Mitochondria into Cytosol" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -403174,7 +402914,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04578">
+            <rdf:Description rdf:about="#R_MAR04578">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/C142ACBP"/>
@@ -403185,16 +402925,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03267m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03267m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03267c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03267c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Acbp1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04581" sboTerm="SBO:0000176" id="MAR04581" name="Production of Tetradecadienoylcarnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04581" sboTerm="SBO:0000176" id="R_MAR04581" name="Production of Tetradecadienoylcarnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -403203,7 +402943,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04581">
+            <rdf:Description rdf:about="#R_MAR04581">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/C142CPT1"/>
@@ -403214,18 +402954,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03974c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03974c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03975c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03975c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="whd"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04598" sboTerm="SBO:0000176" id="MAR04598" name="Production of 3-Hydroxytetradeca Dienoyl Carnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04598" sboTerm="SBO:0000176" id="R_MAR04598" name="Production of 3-Hydroxytetradeca Dienoyl Carnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -403234,7 +402974,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04598">
+            <rdf:Description rdf:about="#R_MAR04598">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/C142OHc"/>
@@ -403245,44 +402985,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03267c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03267c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03268c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03268c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="whd"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04609" sboTerm="SBO:0000185" id="MAR04609" name="Excretion of 3-Hydroxy Trans5,8Tetradecadienoyl Carnitine" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
-        <notes>
-          <body xmlns="http://www.w3.org/1999/xhtml">
-            <p>Confidence Level: 0</p>
-            <p>AUTHORS: PMID:21281499</p>
-          </body>
-        </notes>
-        <annotation>
-          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04609">
-              <bqbiol:is>
-                <rdf:Bag>
-                  <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/C142OHe"/>
-                  <rdf:li rdf:resource="https://identifiers.org/vmhreaction/C142OHe"/>
-                </rdf:Bag>
-              </bqbiol:is>
-            </rdf:Description>
-          </rdf:RDF>
-        </annotation>
-        <listOfReactants>
-          <speciesReference species="MAM03268c" stoichiometry="1" constant="true"/>
-        </listOfReactants>
-        <listOfProducts>
-          <speciesReference species="MAM03268e" stoichiometry="1" constant="true"/>
-        </listOfProducts>
-      </reaction>
-      <reaction metaid="MAR04610" sboTerm="SBO:0000176" id="MAR04610" name="Production of 3-Hydroxytetradecanoylcarnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04610" sboTerm="SBO:0000176" id="R_MAR04610" name="Production of 3-Hydroxytetradecanoylcarnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -403291,7 +403005,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04610">
+            <rdf:Description rdf:about="#R_MAR04610">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/C14OHc"/>
@@ -403303,18 +403017,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00178c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00178c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03262c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03262c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="whd"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04613" sboTerm="SBO:0000176" id="MAR04613" name="Production of 3-Hydroxyhexadecenoylcarnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04613" sboTerm="SBO:0000176" id="R_MAR04613" name="Production of 3-Hydroxyhexadecenoylcarnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -403323,7 +403037,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04613">
+            <rdf:Description rdf:about="#R_MAR04613">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/C161OHc"/>
@@ -403334,18 +403048,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03216c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03216c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03217c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03217c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="whd"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04616" sboTerm="SBO:0000185" id="MAR04616" name="Transport of 3-Hydroxy Trans7, 10-Hexadecadienoylcoa from Mitochondria into Cytosol" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04616" sboTerm="SBO:0000185" id="R_MAR04616" name="Transport of 3-Hydroxy Trans7, 10-Hexadecadienoylcoa from Mitochondria into Cytosol" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -403354,7 +403068,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04616">
+            <rdf:Description rdf:about="#R_MAR04616">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/C162ACBP"/>
@@ -403365,16 +403079,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03265m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03265m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03265c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03265c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Acbp1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04620" sboTerm="SBO:0000176" id="MAR04620" name="Production of 3-Hydroxy Hexadecadienoyl Carnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04620" sboTerm="SBO:0000176" id="R_MAR04620" name="Production of 3-Hydroxy Hexadecadienoyl Carnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -403383,7 +403097,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04620">
+            <rdf:Description rdf:about="#R_MAR04620">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/C162OHc"/>
@@ -403394,44 +403108,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03265c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03265c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03266c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03266c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="whd"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04622" sboTerm="SBO:0000185" id="MAR04622" name="Excretion of 3-Hydroxy Trans7,10-Hexadecadienoyl Carnitine" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
-        <notes>
-          <body xmlns="http://www.w3.org/1999/xhtml">
-            <p>Confidence Level: 0</p>
-            <p>AUTHORS: PMID:21281499</p>
-          </body>
-        </notes>
-        <annotation>
-          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04622">
-              <bqbiol:is>
-                <rdf:Bag>
-                  <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/C162OHe"/>
-                  <rdf:li rdf:resource="https://identifiers.org/vmhreaction/C162OHe"/>
-                </rdf:Bag>
-              </bqbiol:is>
-            </rdf:Description>
-          </rdf:RDF>
-        </annotation>
-        <listOfReactants>
-          <speciesReference species="MAM03266c" stoichiometry="1" constant="true"/>
-        </listOfReactants>
-        <listOfProducts>
-          <speciesReference species="MAM03266e" stoichiometry="1" constant="true"/>
-        </listOfProducts>
-      </reaction>
-      <reaction metaid="MAR04624" sboTerm="SBO:0000176" id="MAR04624" name="Production of Hexadecanedioylcarnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04624" sboTerm="SBO:0000176" id="R_MAR04624" name="Production of Hexadecanedioylcarnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -403441,7 +403129,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04624">
+            <rdf:Description rdf:about="#R_MAR04624">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/C16DCc"/>
@@ -403452,44 +403140,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03655c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03655c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03493c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03493c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="whd"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04626" sboTerm="SBO:0000185" id="MAR04626" name="Transport of Hexadecanedioic Acid Mono-L-Carnitine Ester into Extra Cellular Space" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
-        <notes>
-          <body xmlns="http://www.w3.org/1999/xhtml">
-            <p>Confidence Level: 0</p>
-            <p>AUTHORS: PMID:2064600</p>
-          </body>
-        </notes>
-        <annotation>
-          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04626">
-              <bqbiol:is>
-                <rdf:Bag>
-                  <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/C16DCe"/>
-                  <rdf:li rdf:resource="https://identifiers.org/vmhreaction/C16DCe"/>
-                </rdf:Bag>
-              </bqbiol:is>
-            </rdf:Description>
-          </rdf:RDF>
-        </annotation>
-        <listOfReactants>
-          <speciesReference species="MAM03493c" stoichiometry="1" constant="true"/>
-        </listOfReactants>
-        <listOfProducts>
-          <speciesReference species="MAM03493e" stoichiometry="1" constant="true"/>
-        </listOfProducts>
-      </reaction>
-      <reaction metaid="MAR04634" sboTerm="SBO:0000176" id="MAR04634" name="Production of 3-Hydroxyhexadecanoylcarnitinec" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04634" sboTerm="SBO:0000176" id="R_MAR04634" name="Production of 3-Hydroxyhexadecanoylcarnitinec" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -403498,7 +403160,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04634">
+            <rdf:Description rdf:about="#R_MAR04634">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/C16OHc"/>
@@ -403510,18 +403172,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03218c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03218c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03219c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03219c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="whd"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04636" sboTerm="SBO:0000176" id="MAR04636" name="Production of 3-Hydroxyoctadecenoylcarnitinec" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04636" sboTerm="SBO:0000176" id="R_MAR04636" name="Production of 3-Hydroxyoctadecenoylcarnitinec" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -403530,7 +403192,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04636">
+            <rdf:Description rdf:about="#R_MAR04636">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/C181OHc"/>
@@ -403541,18 +403203,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03252c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03252c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03253c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03253c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="whd"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04638" sboTerm="SBO:0000176" id="MAR04638" name="Production of 3-Hydroxyoctadecadienoylcarnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04638" sboTerm="SBO:0000176" id="R_MAR04638" name="Production of 3-Hydroxyoctadecadienoylcarnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -403561,7 +403223,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04638">
+            <rdf:Description rdf:about="#R_MAR04638">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/C182OHc"/>
@@ -403572,18 +403234,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03249c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03249c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03250c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03250c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="whd"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04639" sboTerm="SBO:0000176" id="MAR04639" name="Production of 3-Hydroxyoctadecanoylcarnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04639" sboTerm="SBO:0000176" id="R_MAR04639" name="Production of 3-Hydroxyoctadecanoylcarnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -403592,7 +403254,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04639">
+            <rdf:Description rdf:about="#R_MAR04639">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/C18OHc"/>
@@ -403603,18 +403265,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03230c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03230c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03251c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03251c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="whd"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04645" sboTerm="SBO:0000185" id="MAR04645" name="Transport of Acetylcarnitine from Peroxisomes to Cytosol" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04645" sboTerm="SBO:0000185" id="R_MAR04645" name="Transport of Acetylcarnitine from Peroxisomes to Cytosol" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -403623,7 +403285,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04645">
+            <rdf:Description rdf:about="#R_MAR04645">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ACRNtp"/>
@@ -403635,70 +403297,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02634x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02634x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02634c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02634c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="colt"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04653" sboTerm="SBO:0000185" id="MAR04653" name="Transport of Malonyl Carnitine into Extra Cellular Space" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
-        <notes>
-          <body xmlns="http://www.w3.org/1999/xhtml">
-            <p>Confidence Level: 0</p>
-            <p>AUTHORS: PMID:19720082</p>
-          </body>
-        </notes>
-        <annotation>
-          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04653">
-              <bqbiol:is>
-                <rdf:Bag>
-                  <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/C3DCe"/>
-                  <rdf:li rdf:resource="https://identifiers.org/vmhreaction/C3DCe"/>
-                </rdf:Bag>
-              </bqbiol:is>
-            </rdf:Description>
-          </rdf:RDF>
-        </annotation>
-        <listOfReactants>
-          <speciesReference species="MAM03494c" stoichiometry="1" constant="true"/>
-        </listOfReactants>
-        <listOfProducts>
-          <speciesReference species="MAM03494e" stoichiometry="1" constant="true"/>
-        </listOfProducts>
-      </reaction>
-      <reaction metaid="MAR04659" sboTerm="SBO:0000185" id="MAR04659" name="Transport of Butyryl Carnitine into the Extra Cellular Space" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
-        <notes>
-          <body xmlns="http://www.w3.org/1999/xhtml">
-            <p>Confidence Level: 0</p>
-            <p>AUTHORS: PMID:19720082</p>
-          </body>
-        </notes>
-        <annotation>
-          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04659">
-              <bqbiol:is>
-                <rdf:Bag>
-                  <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.62"/>
-                  <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/C4CRNe"/>
-                  <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR96415"/>
-                  <rdf:li rdf:resource="https://identifiers.org/vmhreaction/C4CRNe"/>
-                </rdf:Bag>
-              </bqbiol:is>
-            </rdf:Description>
-          </rdf:RDF>
-        </annotation>
-        <listOfReactants>
-          <speciesReference species="MAM02635c" stoichiometry="1" constant="true"/>
-        </listOfReactants>
-        <listOfProducts>
-          <speciesReference species="MAM02635e" stoichiometry="1" constant="true"/>
-        </listOfProducts>
-      </reaction>
-      <reaction metaid="MAR04661" sboTerm="SBO:0000185" id="MAR04661" name="Transport of Succinyl Carnitine into Cytosol" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04661" sboTerm="SBO:0000185" id="R_MAR04661" name="Transport of Succinyl Carnitine into Cytosol" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -403707,7 +403315,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04661">
+            <rdf:Description rdf:about="#R_MAR04661">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/C4DCCACT"/>
@@ -403719,43 +403327,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03495x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03495x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03495c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03495c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="colt"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04669" sboTerm="SBO:0000185" id="MAR04669" name="Transport of Succinyl Carnitine into the Extra Cellular Space" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
-        <notes>
-          <body xmlns="http://www.w3.org/1999/xhtml">
-            <p>Confidence Level: 0</p>
-            <p>AUTHORS: PMID:9266369</p>
-          </body>
-        </notes>
-        <annotation>
-          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04669">
-              <bqbiol:is>
-                <rdf:Bag>
-                  <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/C4DCe"/>
-                  <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR96416"/>
-                  <rdf:li rdf:resource="https://identifiers.org/vmhreaction/C4DCe"/>
-                </rdf:Bag>
-              </bqbiol:is>
-            </rdf:Description>
-          </rdf:RDF>
-        </annotation>
-        <listOfReactants>
-          <speciesReference species="MAM03495c" stoichiometry="1" constant="true"/>
-        </listOfReactants>
-        <listOfProducts>
-          <speciesReference species="MAM03495e" stoichiometry="1" constant="true"/>
-        </listOfProducts>
-      </reaction>
-      <reaction metaid="MAR04671" sboTerm="SBO:0000176" id="MAR04671" name="Production of 3-Hydroxybytyryl Carnitinec" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04671" sboTerm="SBO:0000176" id="R_MAR04671" name="Production of 3-Hydroxybytyryl Carnitinec" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -403764,7 +403345,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04671">
+            <rdf:Description rdf:about="#R_MAR04671">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/C4OHc"/>
@@ -403776,18 +403357,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00159c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00159c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03201c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03201c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="whd"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04674" sboTerm="SBO:0000185" id="MAR04674" name="Transport of Bytyrylcarnitine from Peroxisomes" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04674" sboTerm="SBO:0000185" id="R_MAR04674" name="Transport of Bytyrylcarnitine from Peroxisomes" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -403796,7 +403377,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04674">
+            <rdf:Description rdf:about="#R_MAR04674">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/C4tcx"/>
@@ -403807,16 +403388,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02635x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02635x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02635c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02635c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="colt"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04677" sboTerm="SBO:0000185" id="MAR04677" name="Transport of Bytyrylcarnitine into Mitochondrial Matrix" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04677" sboTerm="SBO:0000185" id="R_MAR04677" name="Transport of Bytyrylcarnitine into Mitochondrial Matrix" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -403825,7 +403406,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04677">
+            <rdf:Description rdf:about="#R_MAR04677">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/C4tmc"/>
@@ -403837,16 +403418,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02635c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02635c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02635m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02635m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="colt"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04678" sboTerm="SBO:0000176" id="MAR04678" name="Esterification of Butyrylcoa to Butyrylcarnitine for Transport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04678" sboTerm="SBO:0000176" id="R_MAR04678" name="Esterification of Butyrylcoa to Butyrylcarnitine for Transport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -403855,7 +403436,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04678">
+            <rdf:Description rdf:about="#R_MAR04678">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/C4x"/>
@@ -403866,18 +403447,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01412x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01412x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01597x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02635x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02635x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CROT"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04707" sboTerm="SBO:0000176" id="MAR04707" name="Production of Isovalerylcarnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04707" sboTerm="SBO:0000176" id="R_MAR04707" name="Production of Isovalerylcarnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -403886,7 +403467,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04707">
+            <rdf:Description rdf:about="#R_MAR04707">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/C50CPT1"/>
@@ -403898,18 +403479,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02189c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02189c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03706c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03706c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="whd"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04711" sboTerm="SBO:0000176" id="MAR04711" name="Production of Tiglylcarnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04711" sboTerm="SBO:0000176" id="R_MAR04711" name="Production of Tiglylcarnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -403918,7 +403499,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04711">
+            <rdf:Description rdf:about="#R_MAR04711">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/C51CPT1"/>
@@ -403930,44 +403511,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02999c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02999c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03496c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03496c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="whd"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04713" sboTerm="SBO:0000185" id="MAR04713" name="Transport of Glutaryl Carnitine into the Extra Cellular Fluid" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
-        <notes>
-          <body xmlns="http://www.w3.org/1999/xhtml">
-            <p>Confidence Level: 0</p>
-            <p>AUTHORS: PMID:19720082</p>
-          </body>
-        </notes>
-        <annotation>
-          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04713">
-              <bqbiol:is>
-                <rdf:Bag>
-                  <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/C5DCe"/>
-                  <rdf:li rdf:resource="https://identifiers.org/vmhreaction/C5DCe"/>
-                </rdf:Bag>
-              </bqbiol:is>
-            </rdf:Description>
-          </rdf:RDF>
-        </annotation>
-        <listOfReactants>
-          <speciesReference species="MAM03497c" stoichiometry="1" constant="true"/>
-        </listOfReactants>
-        <listOfProducts>
-          <speciesReference species="MAM03497e" stoichiometry="1" constant="true"/>
-        </listOfProducts>
-      </reaction>
-      <reaction metaid="MAR04719" sboTerm="SBO:0000176" id="MAR04719" name="Production of Hexanoylcarnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04719" sboTerm="SBO:0000176" id="R_MAR04719" name="Production of Hexanoylcarnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -403976,7 +403531,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04719">
+            <rdf:Description rdf:about="#R_MAR04719">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/C60CPT1"/>
@@ -403987,18 +403542,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02122c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02122c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03498c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03498c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="whd"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04722" sboTerm="SBO:0000176" id="MAR04722" name="Esterification of Of Hexanoylcoa for Transport into Cytosol" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04722" sboTerm="SBO:0000176" id="R_MAR04722" name="Esterification of Of Hexanoylcoa for Transport into Cytosol" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -404007,7 +403562,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04722">
+            <rdf:Description rdf:about="#R_MAR04722">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/C6COAt"/>
@@ -404018,44 +403573,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02122x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02122x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01597x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03498x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03498x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CROT"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04724" sboTerm="SBO:0000185" id="MAR04724" name="Transport of Hexanoyl Carnitine into the Extra Cellular Fluid" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
-        <notes>
-          <body xmlns="http://www.w3.org/1999/xhtml">
-            <p>Confidence Level: 0</p>
-            <p>AUTHORS: PMID:19720082</p>
-          </body>
-        </notes>
-        <annotation>
-          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04724">
-              <bqbiol:is>
-                <rdf:Bag>
-                  <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/C6CRNe"/>
-                  <rdf:li rdf:resource="https://identifiers.org/vmhreaction/C6CRNe"/>
-                </rdf:Bag>
-              </bqbiol:is>
-            </rdf:Description>
-          </rdf:RDF>
-        </annotation>
-        <listOfReactants>
-          <speciesReference species="MAM03498c" stoichiometry="1" constant="true"/>
-        </listOfReactants>
-        <listOfProducts>
-          <speciesReference species="MAM03498e" stoichiometry="1" constant="true"/>
-        </listOfProducts>
-      </reaction>
-      <reaction metaid="MAR04726" sboTerm="SBO:0000185" id="MAR04726" name="Transport of Hexanoylcarnitine into Cytosol" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04726" sboTerm="SBO:0000185" id="R_MAR04726" name="Transport of Hexanoylcarnitine into Cytosol" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -404064,7 +403593,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04726">
+            <rdf:Description rdf:about="#R_MAR04726">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/C6CRNtcx"/>
@@ -404075,16 +403604,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03498x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03498x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03498c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03498c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="colt"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04728" sboTerm="SBO:0000185" id="MAR04728" name="Transport of Adipoyl Carnitine into Cytosol" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04728" sboTerm="SBO:0000185" id="R_MAR04728" name="Transport of Adipoyl Carnitine into Cytosol" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -404093,7 +403622,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04728">
+            <rdf:Description rdf:about="#R_MAR04728">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/C6DCCACT"/>
@@ -404105,16 +403634,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03499x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03499x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03499c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03499c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="colt"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04745" sboTerm="SBO:0000176" id="MAR04745" name="Production of Adipoylcarnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04745" sboTerm="SBO:0000176" id="R_MAR04745" name="Production of Adipoylcarnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -404123,7 +403652,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04745">
+            <rdf:Description rdf:about="#R_MAR04745">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/C6DCc"/>
@@ -404135,45 +403664,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03409c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03409c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03499c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03499c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="whd"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04747" sboTerm="SBO:0000185" id="MAR04747" name="Transport of Adipoyl Carnitine into the Extra Cellular Fluid" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
-        <notes>
-          <body xmlns="http://www.w3.org/1999/xhtml">
-            <p>Confidence Level: 0</p>
-            <p>AUTHORS: PMID:19720082</p>
-          </body>
-        </notes>
-        <annotation>
-          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04747">
-              <bqbiol:is>
-                <rdf:Bag>
-                  <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/C6DCe"/>
-                  <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR96424"/>
-                  <rdf:li rdf:resource="https://identifiers.org/vmhreaction/C6DCe"/>
-                </rdf:Bag>
-              </bqbiol:is>
-            </rdf:Description>
-          </rdf:RDF>
-        </annotation>
-        <listOfReactants>
-          <speciesReference species="MAM03499c" stoichiometry="1" constant="true"/>
-        </listOfReactants>
-        <listOfProducts>
-          <speciesReference species="MAM03499e" stoichiometry="1" constant="true"/>
-        </listOfProducts>
-      </reaction>
-      <reaction metaid="MAR04749" sboTerm="SBO:0000176" id="MAR04749" name="Production of Ocetenoylcarnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04749" sboTerm="SBO:0000176" id="R_MAR04749" name="Production of Ocetenoylcarnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -404182,7 +403684,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04749">
+            <rdf:Description rdf:about="#R_MAR04749">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/C81CPT1"/>
@@ -404193,71 +403695,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03500c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03500c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03501c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03501c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="whd"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04751" sboTerm="SBO:0000185" id="MAR04751" name="Transport of Octenoyl Carnitine into the Extra Cellular Space" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
-        <notes>
-          <body xmlns="http://www.w3.org/1999/xhtml">
-            <p>Confidence Level: 0</p>
-            <p>AUTHORS: PMID:12828998</p>
-          </body>
-        </notes>
-        <annotation>
-          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04751">
-              <bqbiol:is>
-                <rdf:Bag>
-                  <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/C81CRNe"/>
-                  <rdf:li rdf:resource="https://identifiers.org/vmhreaction/C81CRNe"/>
-                </rdf:Bag>
-              </bqbiol:is>
-            </rdf:Description>
-          </rdf:RDF>
-        </annotation>
-        <listOfReactants>
-          <speciesReference species="MAM03501c" stoichiometry="1" constant="true"/>
-        </listOfReactants>
-        <listOfProducts>
-          <speciesReference species="MAM03501e" stoichiometry="1" constant="true"/>
-        </listOfProducts>
-      </reaction>
-      <reaction metaid="MAR04753" sboTerm="SBO:0000185" id="MAR04753" name="Transport of Octanoyl Carnitine into the Extra Cellular Space" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
-        <notes>
-          <body xmlns="http://www.w3.org/1999/xhtml">
-            <p>Confidence Level: 0</p>
-            <p>AUTHORS: PMID:19720082</p>
-          </body>
-        </notes>
-        <annotation>
-          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04753">
-              <bqbiol:is>
-                <rdf:Bag>
-                  <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/C8CRNe"/>
-                  <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR96429"/>
-                  <rdf:li rdf:resource="https://identifiers.org/vmhreaction/C8CRNe"/>
-                </rdf:Bag>
-              </bqbiol:is>
-            </rdf:Description>
-          </rdf:RDF>
-        </annotation>
-        <listOfReactants>
-          <speciesReference species="MAM02409c" stoichiometry="1" constant="true"/>
-        </listOfReactants>
-        <listOfProducts>
-          <speciesReference species="MAM02409e" stoichiometry="1" constant="true"/>
-        </listOfProducts>
-      </reaction>
-      <reaction metaid="MAR04759" sboTerm="SBO:0000176" id="MAR04759" name="Production of Suberylcarnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04759" sboTerm="SBO:0000176" id="R_MAR04759" name="Production of Suberylcarnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -404266,7 +403715,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04759">
+            <rdf:Description rdf:about="#R_MAR04759">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/C8DCc"/>
@@ -404278,45 +403727,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03922c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03922c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03502c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03502c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="whd"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04761" sboTerm="SBO:0000185" id="MAR04761" name="Transport of Suberyl Carnitine into the Extra Cellular Space" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
-        <notes>
-          <body xmlns="http://www.w3.org/1999/xhtml">
-            <p>Confidence Level: 0</p>
-            <p>AUTHORS: PMID:6959231</p>
-          </body>
-        </notes>
-        <annotation>
-          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04761">
-              <bqbiol:is>
-                <rdf:Bag>
-                  <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/C8DCe"/>
-                  <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR96431"/>
-                  <rdf:li rdf:resource="https://identifiers.org/vmhreaction/C8DCe"/>
-                </rdf:Bag>
-              </bqbiol:is>
-            </rdf:Description>
-          </rdf:RDF>
-        </annotation>
-        <listOfReactants>
-          <speciesReference species="MAM03502c" stoichiometry="1" constant="true"/>
-        </listOfReactants>
-        <listOfProducts>
-          <speciesReference species="MAM03502e" stoichiometry="1" constant="true"/>
-        </listOfProducts>
-      </reaction>
-      <reaction metaid="MAR04782" sboTerm="SBO:0000185" id="MAR04782" name="Transport of Dimethylnonanoylcarnitine from Peroxisomes to Cytosol" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04782" sboTerm="SBO:0000185" id="R_MAR04782" name="Transport of Dimethylnonanoylcarnitine from Peroxisomes to Cytosol" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -404325,7 +403747,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04782">
+            <rdf:Description rdf:about="#R_MAR04782">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/C9BRxtc"/>
@@ -404337,16 +403759,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00950x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00950x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00950c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00950c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="colt"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04783" sboTerm="SBO:0000185" id="MAR04783" name="Transport of Decanoate (N-C10:0) into the E.R. by Diffusion" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04783" sboTerm="SBO:0000185" id="R_MAR04783" name="Transport of Decanoate (N-C10:0) into the E.R. by Diffusion" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -404355,7 +403777,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04783">
+            <rdf:Description rdf:about="#R_MAR04783">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/DCATDr"/>
@@ -404367,13 +403789,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01648c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01648c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01648r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01648r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR04793" sboTerm="SBO:0000185" id="MAR04793" name="Transport of Docosapentenoylcoa into Peroxisomes." reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04793" sboTerm="SBO:0000185" id="R_MAR04793" name="Transport of Docosapentenoylcoa into Peroxisomes." reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -404382,7 +403804,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04793">
+            <rdf:Description rdf:about="#R_MAR04793">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/DCSPTN1COAtxc"/>
@@ -404394,153 +403816,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00093c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00093c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00093x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00093x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Abcd1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04794" sboTerm="SBO:0000185" id="MAR04794" name="Transport of 3-Hydroxydodecanoyl Carnitine into Extra Cellular Space" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
-        <notes>
-          <body xmlns="http://www.w3.org/1999/xhtml">
-            <p>Confidence Level: 0</p>
-            <p>AUTHORS: PMID:15535801</p>
-          </body>
-        </notes>
-        <annotation>
-          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04794">
-              <bqbiol:is>
-                <rdf:Bag>
-                  <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/DDCRNe"/>
-                  <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR97212"/>
-                  <rdf:li rdf:resource="https://identifiers.org/vmhreaction/DDCRNe"/>
-                </rdf:Bag>
-              </bqbiol:is>
-            </rdf:Description>
-          </rdf:RDF>
-        </annotation>
-        <listOfReactants>
-          <speciesReference species="MAM03202c" stoichiometry="1" constant="true"/>
-        </listOfReactants>
-        <listOfProducts>
-          <speciesReference species="MAM03202e" stoichiometry="1" constant="true"/>
-        </listOfProducts>
-      </reaction>
-      <reaction metaid="MAR04795" sboTerm="SBO:0000185" id="MAR04795" name="Transport of Lauroyl Carnitine into Extra Cellular Space" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
-        <notes>
-          <body xmlns="http://www.w3.org/1999/xhtml">
-            <p>Confidence Level: 0</p>
-            <p>AUTHORS: PMID:21463612;PMID:12828998;PMID:9498103;PMID:20026021</p>
-          </body>
-        </notes>
-        <annotation>
-          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04795">
-              <bqbiol:is>
-                <rdf:Bag>
-                  <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/DDECCRNe"/>
-                  <rdf:li rdf:resource="https://identifiers.org/vmhreaction/DDECCRNe"/>
-                </rdf:Bag>
-              </bqbiol:is>
-            </rdf:Description>
-          </rdf:RDF>
-        </annotation>
-        <listOfReactants>
-          <speciesReference species="MAM03540c" stoichiometry="1" constant="true"/>
-        </listOfReactants>
-        <listOfProducts>
-          <speciesReference species="MAM03540e" stoichiometry="1" constant="true"/>
-        </listOfProducts>
-      </reaction>
-      <reaction metaid="MAR04798" sboTerm="SBO:0000185" id="MAR04798" name="Transport of Dodecenoyl Carnitine into Extra Cellular Space" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
-        <notes>
-          <body xmlns="http://www.w3.org/1999/xhtml">
-            <p>Confidence Level: 0</p>
-            <p>AUTHORS: PMID:20026021</p>
-          </body>
-        </notes>
-        <annotation>
-          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04798">
-              <bqbiol:is>
-                <rdf:Bag>
-                  <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/DDECE1CRNe"/>
-                  <rdf:li rdf:resource="https://identifiers.org/vmhreaction/DDECE1CRNe"/>
-                </rdf:Bag>
-              </bqbiol:is>
-            </rdf:Description>
-          </rdf:RDF>
-        </annotation>
-        <listOfReactants>
-          <speciesReference species="MAM03541c" stoichiometry="1" constant="true"/>
-        </listOfReactants>
-        <listOfProducts>
-          <speciesReference species="MAM03541e" stoichiometry="1" constant="true"/>
-        </listOfProducts>
-      </reaction>
-      <reaction metaid="MAR04800" sboTerm="SBO:0000185" id="MAR04800" name="Transport of 3-Hydroxydecanoyl Carnitine into Extra Cellular Space" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
-        <notes>
-          <body xmlns="http://www.w3.org/1999/xhtml">
-            <p>Confidence Level: 0</p>
-            <p>AUTHORS: PMID:19720082</p>
-          </body>
-        </notes>
-        <annotation>
-          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04800">
-              <bqbiol:is>
-                <rdf:Bag>
-                  <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/DECCRNe"/>
-                  <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR97224"/>
-                  <rdf:li rdf:resource="https://identifiers.org/vmhreaction/DECCRNe"/>
-                </rdf:Bag>
-              </bqbiol:is>
-            </rdf:Description>
-          </rdf:RDF>
-        </annotation>
-        <listOfReactants>
-          <speciesReference species="MAM03204c" stoichiometry="1" constant="true"/>
-        </listOfReactants>
-        <listOfProducts>
-          <speciesReference species="MAM03204e" stoichiometry="1" constant="true"/>
-        </listOfProducts>
-      </reaction>
-      <reaction metaid="MAR04801" sboTerm="SBO:0000185" id="MAR04801" name="Transport of Decadienoyl Carnitine into the Extra Cellular Space" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
-        <notes>
-          <body xmlns="http://www.w3.org/1999/xhtml">
-            <p>Confidence Level: 0</p>
-            <p>AUTHORS: PMID:21215187</p>
-          </body>
-        </notes>
-        <annotation>
-          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04801">
-              <bqbiol:is>
-                <rdf:Bag>
-                  <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/DECDICRNe"/>
-                  <rdf:li rdf:resource="https://identifiers.org/vmhreaction/DECDICRNe"/>
-                </rdf:Bag>
-              </bqbiol:is>
-            </rdf:Description>
-          </rdf:RDF>
-        </annotation>
-        <listOfReactants>
-          <speciesReference species="MAM03544c" stoichiometry="1" constant="true"/>
-        </listOfReactants>
-        <listOfProducts>
-          <speciesReference species="MAM03544e" stoichiometry="1" constant="true"/>
-        </listOfProducts>
-      </reaction>
-      <reaction metaid="MAR04803" sboTerm="SBO:0000185" id="MAR04803" name="Transport of 13-Docosenoylcoa into Peroxisomes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04803" sboTerm="SBO:0000185" id="R_MAR04803" name="Transport of 13-Docosenoylcoa into Peroxisomes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -404549,7 +403839,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04803">
+            <rdf:Description rdf:about="#R_MAR04803">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/DOCO13ECOAtxc"/>
@@ -404560,21 +403850,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03555c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03555x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03555x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Abcd1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04805" sboTerm="SBO:0000176" id="MAR04805" name="Absorption Or Uptake of 13-Docosenoic Acid into Cells" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04805" sboTerm="SBO:0000176" id="R_MAR04805" name="Absorption Or Uptake of 13-Docosenoic Acid into Cells" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -404583,7 +403873,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04805">
+            <rdf:Description rdf:about="#R_MAR04805">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/DOCO13EFATP"/>
@@ -404594,14 +403884,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01583e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01583e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01334c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03555c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -404610,7 +403900,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04807" sboTerm="SBO:0000185" id="MAR04807" name="Transport of Docosanoic Acid by Diffusion" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04807" sboTerm="SBO:0000185" id="R_MAR04807" name="Transport of Docosanoic Acid by Diffusion" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -404619,7 +403909,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04807">
+            <rdf:Description rdf:about="#R_MAR04807">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/DOCOSACTDr"/>
@@ -404630,13 +403920,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01373c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01373c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01373r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01373r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR04809" sboTerm="SBO:0000185" id="MAR04809" name="Transport of Docosanedioic Acid by Diffusion" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04809" sboTerm="SBO:0000185" id="R_MAR04809" name="Transport of Docosanedioic Acid by Diffusion" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -404645,7 +403935,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04809">
+            <rdf:Description rdf:about="#R_MAR04809">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/DOCOSADIACTD"/>
@@ -404656,13 +403946,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03560r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03560r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03560c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03560c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR04811" sboTerm="SBO:0000185" id="MAR04811" name="Transport of Behenoylcoa into Peroxisomes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04811" sboTerm="SBO:0000185" id="R_MAR04811" name="Transport of Behenoylcoa into Peroxisomes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -404671,7 +403961,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04811">
+            <rdf:Description rdf:about="#R_MAR04811">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/DOCOSCOAtxc"/>
@@ -404683,21 +403973,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01725c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01725c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01725x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01725x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Abcd1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04813" sboTerm="SBO:0000185" id="MAR04813" name="Excretion of Docosanedioic Acid" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04813" sboTerm="SBO:0000185" id="R_MAR04813" name="Excretion of Docosanedioic Acid" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -404706,7 +403996,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04813">
+            <rdf:Description rdf:about="#R_MAR04813">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/DOCOSDIACTD"/>
@@ -404717,13 +404007,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03560c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03560c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03560e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03560e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR04815" sboTerm="SBO:0000627" id="MAR04815" name="Exchange of 3-Hydroxy Butyryl Carnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04815" sboTerm="SBO:0000627" id="R_MAR04815" name="Exchange of 3-Hydroxy Butyryl Carnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -404731,7 +404021,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04815">
+            <rdf:Description rdf:about="#R_MAR04815">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_3bcrn_e"/>
@@ -404743,10 +404033,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03201e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03201e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR04820" sboTerm="SBO:0000627" id="MAR04820" name="Exchange of 3-Hydroxydodecanoyl Carnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04820" sboTerm="SBO:0000627" id="R_MAR04820" name="Exchange of 3-Hydroxydodecanoyl Carnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -404754,7 +404044,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04820">
+            <rdf:Description rdf:about="#R_MAR04820">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_3ddcrn_e"/>
@@ -404766,10 +404056,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03202e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03202e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR04821" sboTerm="SBO:0000627" id="MAR04821" name="Exchange of 3-Hydroxydecanoyl Carnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04821" sboTerm="SBO:0000627" id="R_MAR04821" name="Exchange of 3-Hydroxydecanoyl Carnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -404777,7 +404067,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04821">
+            <rdf:Description rdf:about="#R_MAR04821">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_3deccrn_e"/>
@@ -404789,10 +404079,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03204e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03204e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR04822" sboTerm="SBO:0000627" id="MAR04822" name="Exchange of 3-Hydroxyhexadecenoyl Carnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04822" sboTerm="SBO:0000627" id="R_MAR04822" name="Exchange of 3-Hydroxyhexadecenoyl Carnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -404800,7 +404090,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04822">
+            <rdf:Description rdf:about="#R_MAR04822">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_3hdececrn_e"/>
@@ -404811,10 +404101,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03217e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03217e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR04823" sboTerm="SBO:0000627" id="MAR04823" name="Exchange of 3-Hydroxyhexadecanoyl Carnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04823" sboTerm="SBO:0000627" id="R_MAR04823" name="Exchange of 3-Hydroxyhexadecanoyl Carnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -404822,7 +404112,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04823">
+            <rdf:Description rdf:about="#R_MAR04823">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_3hexdcrn_e"/>
@@ -404834,10 +404124,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03219e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03219e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR04824" sboTerm="SBO:0000627" id="MAR04824" name="Exchange of 3-Hydroxy-Isovaleryl Carnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04824" sboTerm="SBO:0000627" id="R_MAR04824" name="Exchange of 3-Hydroxy-Isovaleryl Carnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -404845,7 +404135,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04824">
+            <rdf:Description rdf:about="#R_MAR04824">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_3ivcrn_e"/>
@@ -404856,10 +404146,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03243e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03243e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR04825" sboTerm="SBO:0000627" id="MAR04825" name="Exchange of 3-Hydroxyoctadecadienoyl Carnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04825" sboTerm="SBO:0000627" id="R_MAR04825" name="Exchange of 3-Hydroxyoctadecadienoyl Carnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -404867,7 +404157,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04825">
+            <rdf:Description rdf:about="#R_MAR04825">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_3octdec2crn_e"/>
@@ -404878,10 +404168,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03250e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03250e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR04826" sboTerm="SBO:0000627" id="MAR04826" name="Exchange of 3-Hydroxyoctadecanoyl Carnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04826" sboTerm="SBO:0000627" id="R_MAR04826" name="Exchange of 3-Hydroxyoctadecanoyl Carnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -404889,7 +404179,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04826">
+            <rdf:Description rdf:about="#R_MAR04826">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_3octdeccrn_e"/>
@@ -404900,10 +404190,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03251e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03251e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR04827" sboTerm="SBO:0000627" id="MAR04827" name="Exchange of 3-Hydroxy-Octadecenoyl Carnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04827" sboTerm="SBO:0000627" id="R_MAR04827" name="Exchange of 3-Hydroxy-Octadecenoyl Carnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -404911,7 +404201,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04827">
+            <rdf:Description rdf:about="#R_MAR04827">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_3octdece1crn_e"/>
@@ -404922,10 +404212,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03253e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03253e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR04828" sboTerm="SBO:0000627" id="MAR04828" name="Exchange of 3-Hydroxy-Tetradecanoyl Carnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04828" sboTerm="SBO:0000627" id="R_MAR04828" name="Exchange of 3-Hydroxy-Tetradecanoyl Carnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -404933,7 +404223,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04828">
+            <rdf:Description rdf:about="#R_MAR04828">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_3tdcrn_e"/>
@@ -404945,10 +404235,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03262e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03262e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR04829" sboTerm="SBO:0000627" id="MAR04829" name="Exchange of 3-Hydroxy Tetradecenoyl-7-Carnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04829" sboTerm="SBO:0000627" id="R_MAR04829" name="Exchange of 3-Hydroxy Tetradecenoyl-7-Carnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -404956,7 +404246,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04829">
+            <rdf:Description rdf:about="#R_MAR04829">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_3tetd7ecoacrn_e"/>
@@ -404967,10 +404257,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03264e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03264e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR04830" sboTerm="SBO:0000627" id="MAR04830" name="Exchange of 3-Hydroxy Trans7, 10-Hexadecadienoyl Carnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04830" sboTerm="SBO:0000627" id="R_MAR04830" name="Exchange of 3-Hydroxy Trans7, 10-Hexadecadienoyl Carnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -404978,7 +404268,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04830">
+            <rdf:Description rdf:about="#R_MAR04830">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_3thexddcoacrn_e"/>
@@ -404989,10 +404279,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03266e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03266e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR04853" sboTerm="SBO:0000627" id="MAR04853" name="Exchange of 3-Hydroxy Trans5, 8Tetradecadienoyl Carnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04853" sboTerm="SBO:0000627" id="R_MAR04853" name="Exchange of 3-Hydroxy Trans5, 8Tetradecadienoyl Carnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -405000,7 +404290,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04853">
+            <rdf:Description rdf:about="#R_MAR04853">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_3ttetddcoacrn_e"/>
@@ -405011,10 +404301,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03268e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03268e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR04857" sboTerm="SBO:0000627" id="MAR04857" name="Exchange of Decenoyl Carnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04857" sboTerm="SBO:0000627" id="R_MAR04857" name="Exchange of Decenoyl Carnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -405022,7 +404312,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04857">
+            <rdf:Description rdf:about="#R_MAR04857">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_c101crn_e"/>
@@ -405033,10 +404323,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03487e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03487e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR04859" sboTerm="SBO:0000627" id="MAR04859" name="Exchange of Decanoyl Carnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04859" sboTerm="SBO:0000627" id="R_MAR04859" name="Exchange of Decanoyl Carnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -405044,7 +404334,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04859">
+            <rdf:Description rdf:about="#R_MAR04859">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_c10crn_e"/>
@@ -405055,10 +404345,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03488e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03488e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR04866" sboTerm="SBO:0000627" id="MAR04866" name="Exchange of Sebacoyl Carnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04866" sboTerm="SBO:0000627" id="R_MAR04866" name="Exchange of Sebacoyl Carnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -405066,7 +404356,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04866">
+            <rdf:Description rdf:about="#R_MAR04866">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_c10dc_e"/>
@@ -405078,10 +404368,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03489e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03489e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR04869" sboTerm="SBO:0000627" id="MAR04869" name="Exchange of Dodecanedioyl Carnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04869" sboTerm="SBO:0000627" id="R_MAR04869" name="Exchange of Dodecanedioyl Carnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -405089,7 +404379,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04869">
+            <rdf:Description rdf:about="#R_MAR04869">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_c12dc_e"/>
@@ -405100,10 +404390,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03490e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03490e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR04884" sboTerm="SBO:0000627" id="MAR04884" name="Exchange of Hexadecanedioic Acid Mono-L-Carnitine Ester" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04884" sboTerm="SBO:0000627" id="R_MAR04884" name="Exchange of Hexadecanedioic Acid Mono-L-Carnitine Ester" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -405111,7 +404401,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04884">
+            <rdf:Description rdf:about="#R_MAR04884">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_c16dc_e"/>
@@ -405122,10 +404412,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03493e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03493e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR04886" sboTerm="SBO:0000627" id="MAR04886" name="Exchange of Malonyl Carnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04886" sboTerm="SBO:0000627" id="R_MAR04886" name="Exchange of Malonyl Carnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -405133,7 +404423,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04886">
+            <rdf:Description rdf:about="#R_MAR04886">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_c3dc_e"/>
@@ -405144,10 +404434,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03494e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03494e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR04889" sboTerm="SBO:0000627" id="MAR04889" name="Exchange of Butyryl Carnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04889" sboTerm="SBO:0000627" id="R_MAR04889" name="Exchange of Butyryl Carnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -405155,7 +404445,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04889">
+            <rdf:Description rdf:about="#R_MAR04889">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_c4crn_e"/>
@@ -405167,10 +404457,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02635e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02635e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR04891" sboTerm="SBO:0000627" id="MAR04891" name="Exchange of Succinyl Carnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04891" sboTerm="SBO:0000627" id="R_MAR04891" name="Exchange of Succinyl Carnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -405178,7 +404468,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04891">
+            <rdf:Description rdf:about="#R_MAR04891">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_c4dc_e"/>
@@ -405190,10 +404480,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03495e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03495e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR04895" sboTerm="SBO:0000627" id="MAR04895" name="Exchange of Tiglyl Carnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04895" sboTerm="SBO:0000627" id="R_MAR04895" name="Exchange of Tiglyl Carnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -405201,7 +404491,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04895">
+            <rdf:Description rdf:about="#R_MAR04895">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_c51crn_e"/>
@@ -405213,10 +404503,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03496e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03496e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR04897" sboTerm="SBO:0000627" id="MAR04897" name="Exchange of Glutaryl Carnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04897" sboTerm="SBO:0000627" id="R_MAR04897" name="Exchange of Glutaryl Carnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -405224,7 +404514,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04897">
+            <rdf:Description rdf:about="#R_MAR04897">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_c5dc_e"/>
@@ -405235,10 +404525,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03497e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03497e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR04899" sboTerm="SBO:0000627" id="MAR04899" name="Exchange of Hexanoyl Carnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04899" sboTerm="SBO:0000627" id="R_MAR04899" name="Exchange of Hexanoyl Carnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -405246,7 +404536,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04899">
+            <rdf:Description rdf:about="#R_MAR04899">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_c6crn_e"/>
@@ -405257,10 +404547,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03498e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03498e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR04901" sboTerm="SBO:0000627" id="MAR04901" name="Exchange of Adipoyl Carnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04901" sboTerm="SBO:0000627" id="R_MAR04901" name="Exchange of Adipoyl Carnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -405268,7 +404558,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04901">
+            <rdf:Description rdf:about="#R_MAR04901">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_c6dc_e"/>
@@ -405280,10 +404570,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03499e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03499e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR04909" sboTerm="SBO:0000627" id="MAR04909" name="Exchange of Octenoyl Carnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04909" sboTerm="SBO:0000627" id="R_MAR04909" name="Exchange of Octenoyl Carnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -405291,7 +404581,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04909">
+            <rdf:Description rdf:about="#R_MAR04909">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_c81crn_e"/>
@@ -405302,10 +404592,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03501e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03501e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR04918" sboTerm="SBO:0000627" id="MAR04918" name="Exchange of Octanoyl Carnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04918" sboTerm="SBO:0000627" id="R_MAR04918" name="Exchange of Octanoyl Carnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -405313,7 +404603,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04918">
+            <rdf:Description rdf:about="#R_MAR04918">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_c8crn_e"/>
@@ -405325,10 +404615,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02409e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02409e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR04920" sboTerm="SBO:0000627" id="MAR04920" name="Exchange of Suberyl Carnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04920" sboTerm="SBO:0000627" id="R_MAR04920" name="Exchange of Suberyl Carnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -405336,7 +404626,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04920">
+            <rdf:Description rdf:about="#R_MAR04920">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_c8dc_e"/>
@@ -405348,10 +404638,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03502e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03502e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR04921" sboTerm="SBO:0000627" id="MAR04921" name="Exchange of Dodecenoyl Carnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04921" sboTerm="SBO:0000627" id="R_MAR04921" name="Exchange of Dodecenoyl Carnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -405359,7 +404649,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04921">
+            <rdf:Description rdf:about="#R_MAR04921">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_ddece1crn_e"/>
@@ -405370,10 +404660,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03541e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03541e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR04923" sboTerm="SBO:0000627" id="MAR04923" name="Exchange of Lauroyl Carnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04923" sboTerm="SBO:0000627" id="R_MAR04923" name="Exchange of Lauroyl Carnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -405381,7 +404671,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04923">
+            <rdf:Description rdf:about="#R_MAR04923">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_ddeccrn_e"/>
@@ -405392,10 +404682,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03540e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03540e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR04925" sboTerm="SBO:0000627" id="MAR04925" name="Exchange of Decadienoyl Carnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04925" sboTerm="SBO:0000627" id="R_MAR04925" name="Exchange of Decadienoyl Carnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -405403,7 +404693,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04925">
+            <rdf:Description rdf:about="#R_MAR04925">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_decdicrn_e"/>
@@ -405414,10 +404704,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03544e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03544e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR04927" sboTerm="SBO:0000627" id="MAR04927" name="Exchange of Docosenoic Acid (C22:1)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04927" sboTerm="SBO:0000627" id="R_MAR04927" name="Exchange of Docosenoic Acid (C22:1)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -405425,7 +404715,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04927">
+            <rdf:Description rdf:about="#R_MAR04927">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_doco13ac_e"/>
@@ -405436,10 +404726,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01583e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01583e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR04929" sboTerm="SBO:0000627" id="MAR04929" name="Exchange of Behenic Acid" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04929" sboTerm="SBO:0000627" id="R_MAR04929" name="Exchange of Behenic Acid" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -405447,7 +404737,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04929">
+            <rdf:Description rdf:about="#R_MAR04929">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_docosac_e"/>
@@ -405459,10 +404749,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01373e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01373e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR04936" sboTerm="SBO:0000627" id="MAR04936" name="Exchange of Docosanedioic Acid" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04936" sboTerm="SBO:0000627" id="R_MAR04936" name="Exchange of Docosanedioic Acid" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -405470,7 +404760,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04936">
+            <rdf:Description rdf:about="#R_MAR04936">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_docosdiac_e"/>
@@ -405481,10 +404771,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03560e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03560e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR04943" sboTerm="SBO:0000627" id="MAR04943" name="Exchange of Isovaleryl Carnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04943" sboTerm="SBO:0000627" id="R_MAR04943" name="Exchange of Isovaleryl Carnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -405492,7 +404782,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04943">
+            <rdf:Description rdf:about="#R_MAR04943">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_ivcrn_e"/>
@@ -405504,10 +404794,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03706e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03706e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR04950" sboTerm="SBO:0000627" id="MAR04950" name="Exchange of Tetradecadienoyl Carnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04950" sboTerm="SBO:0000627" id="R_MAR04950" name="Exchange of Tetradecadienoyl Carnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -405515,7 +404805,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04950">
+            <rdf:Description rdf:about="#R_MAR04950">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_tetdec2crn_e"/>
@@ -405526,10 +404816,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03975e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03975e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR04965" sboTerm="SBO:0000627" id="MAR04965" name="Exchange of Tetradecenoyl Carnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04965" sboTerm="SBO:0000627" id="R_MAR04965" name="Exchange of Tetradecenoyl Carnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -405537,7 +404827,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04965">
+            <rdf:Description rdf:about="#R_MAR04965">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_tetdece1crn_e"/>
@@ -405548,10 +404838,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03980e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03980e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR04966" sboTerm="SBO:0000176" id="MAR04966" name="Fatty Acid Beta Oxidation (C10:1-&gt;C10:2), Peroxisomal" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04966" sboTerm="SBO:0000176" id="R_MAR04966" name="Fatty Acid Beta Oxidation (C10:1-&gt;C10:2), Peroxisomal" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -405560,7 +404850,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04966">
+            <rdf:Description rdf:about="#R_MAR04966">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FAOXC101C102x"/>
@@ -405571,18 +404861,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00980x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00980x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00678x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02041x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00678x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="ACOX1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04967" sboTerm="SBO:0000176" id="MAR04967" name="Fatty Acid Beta Oxidation (C10:1-&gt;C8), Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04967" sboTerm="SBO:0000176" id="R_MAR04967" name="Fatty Acid Beta Oxidation (C10:1-&gt;C8), Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -405591,7 +404881,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04967">
+            <rdf:Description rdf:about="#R_MAR04967">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FAOXC101C8m"/>
@@ -405602,16 +404892,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02644m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02644m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:and>
@@ -405620,7 +404910,7 @@
           </fbc:and>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04968" sboTerm="SBO:0000176" id="MAR04968" name="Fatty Acid Beta Oxidation (C10:1-&gt;C8:0), Peroxisomal" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04968" sboTerm="SBO:0000176" id="R_MAR04968" name="Fatty Acid Beta Oxidation (C10:1-&gt;C8:0), Peroxisomal" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -405629,7 +404919,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04968">
+            <rdf:Description rdf:about="#R_MAR04968">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FAOXC101C8x"/>
@@ -405640,22 +404930,22 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00039x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00039x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02644x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02644x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Mfe2"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04978" sboTerm="SBO:0000176" id="MAR04978" name="Fatty Acid Beta Oxidation (C10:2-&gt;C10:3), Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04978" sboTerm="SBO:0000176" id="R_MAR04978" name="Fatty Acid Beta Oxidation (C10:2-&gt;C10:3), Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -405664,7 +404954,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04978">
+            <rdf:Description rdf:about="#R_MAR04978">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FAOXC102C103m"/>
@@ -405675,18 +404965,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01802m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03542m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01802m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03542m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01803m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03545m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01803m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03545m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Mcad"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04981" sboTerm="SBO:0000176" id="MAR04981" name="Fatty Acid Beta Oxidation (C10:2-&gt;C10:3), Peroxisomal" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04981" sboTerm="SBO:0000176" id="R_MAR04981" name="Fatty Acid Beta Oxidation (C10:2-&gt;C10:3), Peroxisomal" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -405695,7 +404985,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04981">
+            <rdf:Description rdf:about="#R_MAR04981">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FAOXC102C103x"/>
@@ -405706,18 +404996,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02630x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03542x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03542x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02041x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03545x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03545x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="ACOX1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04984" sboTerm="SBO:0000176" id="MAR04984" name="Fatty Acid Beta Oxidation (C10:2-&gt;C8:1), Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04984" sboTerm="SBO:0000176" id="R_MAR04984" name="Fatty Acid Beta Oxidation (C10:2-&gt;C8:1), Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -405726,7 +405016,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04984">
+            <rdf:Description rdf:about="#R_MAR04984">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FAOXC102C81m"/>
@@ -405737,16 +405027,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02830m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02830m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03794m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03794m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:and>
@@ -405755,7 +405045,7 @@
           </fbc:and>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04987" sboTerm="SBO:0000176" id="MAR04987" name="Fatty Acid Beta Oxidation (C10:2-&gt;C8:1), Peroxisomal" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04987" sboTerm="SBO:0000176" id="R_MAR04987" name="Fatty Acid Beta Oxidation (C10:2-&gt;C8:1), Peroxisomal" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -405764,7 +405054,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04987">
+            <rdf:Description rdf:about="#R_MAR04987">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FAOXC102C81x"/>
@@ -405775,22 +405065,22 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02830x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02830x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03794x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03794x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Mfe2"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04988" sboTerm="SBO:0000176" id="MAR04988" name="Isomerization (C10:2), Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04988" sboTerm="SBO:0000176" id="R_MAR04988" name="Isomerization (C10:2), Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -405799,7 +405089,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04988">
+            <rdf:Description rdf:about="#R_MAR04988">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FAOXC102m"/>
@@ -405810,16 +405100,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03205m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03205m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02830m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02830m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG4598"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR04991" sboTerm="SBO:0000176" id="MAR04991" name="Isomerization (C10:2), Peroxisomal" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04991" sboTerm="SBO:0000176" id="R_MAR04991" name="Isomerization (C10:2), Peroxisomal" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -405828,7 +405118,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04991">
+            <rdf:Description rdf:about="#R_MAR04991">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FAOXC102x"/>
@@ -405839,16 +405129,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03205x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03205x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02830x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02830x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Dci"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05019" sboTerm="SBO:0000176" id="MAR05019" name="Fatty Acid Beta Oxidation (C10-&gt;Ohc10), Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05019" sboTerm="SBO:0000176" id="R_MAR05019" name="Fatty Acid Beta Oxidation (C10-&gt;Ohc10), Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -405857,7 +405147,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05019">
+            <rdf:Description rdf:about="#R_MAR05019">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FAOXC10C10OHm"/>
@@ -405868,13 +405158,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01650m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01802m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01650m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01802m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00181m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01803m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00181m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01803m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:and>
@@ -405883,7 +405173,7 @@
           </fbc:and>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05024" sboTerm="SBO:0000176" id="MAR05024" name="Fatty Acid Beta Oxidation (C10-&gt;C8), Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05024" sboTerm="SBO:0000176" id="R_MAR05024" name="Fatty Acid Beta Oxidation (C10-&gt;C8), Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -405892,7 +405182,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05024">
+            <rdf:Description rdf:about="#R_MAR05024">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FAOXC10080m"/>
@@ -405904,18 +405194,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01650m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01802m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01650m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01802m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01803m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02644m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01803m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02644m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:and>
@@ -405925,7 +405215,7 @@
           </fbc:and>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05025" sboTerm="SBO:0000176" id="MAR05025" name="Fatty Acid Beta Oxidation (C10-&gt;C8), Peroxisomal" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05025" sboTerm="SBO:0000176" id="R_MAR05025" name="Fatty Acid Beta Oxidation (C10-&gt;C8), Peroxisomal" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -405934,7 +405224,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05025">
+            <rdf:Description rdf:about="#R_MAR05025">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FAOXC10080x"/>
@@ -405946,18 +405236,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01650x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01650x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02041x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02644x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02644x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:and>
@@ -405966,7 +405256,7 @@
           </fbc:and>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05026" sboTerm="SBO:0000176" id="MAR05026" name="Fatty Acid Beta Oxidation (C10Dc-&gt;C8Dc)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05026" sboTerm="SBO:0000176" id="R_MAR05026" name="Fatty Acid Beta Oxidation (C10Dc-&gt;C8Dc)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -405975,7 +405265,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05026">
+            <rdf:Description rdf:about="#R_MAR05026">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FAOXC10DCC8DCx"/>
@@ -405986,18 +405276,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03924x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03924x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02041x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03922x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03922x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:and>
@@ -406006,7 +405296,7 @@
           </fbc:and>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05028" sboTerm="SBO:0000176" id="MAR05028" name="Fatty Acid Beta Oxidation (C11Br-&gt;C9Br), Peroxisomal" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05028" sboTerm="SBO:0000176" id="R_MAR05028" name="Fatty Acid Beta Oxidation (C11Br-&gt;C9Br), Peroxisomal" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -406015,7 +405305,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05028">
+            <rdf:Description rdf:about="#R_MAR05028">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FAOXC11BRC9BRx"/>
@@ -406026,18 +405316,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM04004x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04004x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02041x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02774x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03554x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02774x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03554x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:and>
@@ -406046,7 +405336,7 @@
           </fbc:and>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05030" sboTerm="SBO:0000176" id="MAR05030" name="Fatty Acid Beta Oxidation (C11-&gt;C9), Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05030" sboTerm="SBO:0000176" id="R_MAR05030" name="Fatty Acid Beta Oxidation (C11-&gt;C9), Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -406055,7 +405345,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05030">
+            <rdf:Description rdf:about="#R_MAR05030">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FAOXC11C9m"/>
@@ -406066,18 +405356,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01802m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03116m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01802m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03116m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01803m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02616m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01803m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02616m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:and>
@@ -406087,7 +405377,7 @@
           </fbc:and>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05044" sboTerm="SBO:0000176" id="MAR05044" name="Fatty Acid Beta Oxidation (C12:1-&gt;C10:1), Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05044" sboTerm="SBO:0000176" id="R_MAR05044" name="Fatty Acid Beta Oxidation (C12:1-&gt;C10:1), Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -406096,7 +405386,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05044">
+            <rdf:Description rdf:about="#R_MAR05044">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FAOXC121C101m"/>
@@ -406107,18 +405397,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01802m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03539m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01802m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03539m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01803m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03035m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01803m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03035m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:and>
@@ -406128,7 +405418,7 @@
           </fbc:and>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05069" sboTerm="SBO:0000176" id="MAR05069" name="Fatty Acid Beta Xoidation (C12:1-&gt;C10), Peroxisomal" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05069" sboTerm="SBO:0000176" id="R_MAR05069" name="Fatty Acid Beta Xoidation (C12:1-&gt;C10), Peroxisomal" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -406137,7 +405427,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05069">
+            <rdf:Description rdf:about="#R_MAR05069">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FAOXC121C10x"/>
@@ -406148,22 +405438,22 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00042x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00042x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01650x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01650x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Mfe2"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05072" sboTerm="SBO:0000176" id="MAR05072" name="Fatty Acid Beta Oxidation (C12:2-&gt;C10:1), Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05072" sboTerm="SBO:0000176" id="R_MAR05072" name="Fatty Acid Beta Oxidation (C12:2-&gt;C10:1), Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -406172,7 +405462,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05072">
+            <rdf:Description rdf:about="#R_MAR05072">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FAOXC122C101m"/>
@@ -406183,16 +405473,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02698m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02698m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00980m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01261m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00980m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:and>
@@ -406201,7 +405491,7 @@
           </fbc:and>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05075" sboTerm="SBO:0000176" id="MAR05075" name="Isomerization (C12:2), Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05075" sboTerm="SBO:0000176" id="R_MAR05075" name="Isomerization (C12:2), Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -406210,7 +405500,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05075">
+            <rdf:Description rdf:about="#R_MAR05075">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FAOXC122m"/>
@@ -406221,16 +405511,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03203m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03203m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02698m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02698m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG4598"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05081" sboTerm="SBO:0000176" id="MAR05081" name="Isomerization (C12:2), Peroxisomal" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05081" sboTerm="SBO:0000176" id="R_MAR05081" name="Isomerization (C12:2), Peroxisomal" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -406239,7 +405529,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05081">
+            <rdf:Description rdf:about="#R_MAR05081">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FAOXC122x"/>
@@ -406250,16 +405540,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03203x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03203x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02698x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02698x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Dci"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05083" sboTerm="SBO:0000176" id="MAR05083" name="Fatty Acid Beta Oxidation (C12:3-&gt;C10:2), Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05083" sboTerm="SBO:0000176" id="R_MAR05083" name="Fatty Acid Beta Oxidation (C12:3-&gt;C10:2), Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -406268,7 +405558,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05083">
+            <rdf:Description rdf:about="#R_MAR05083">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FAOXC123C102m"/>
@@ -406279,16 +405569,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03172m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03172m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03542m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03542m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:and>
@@ -406297,7 +405587,7 @@
           </fbc:and>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05086" sboTerm="SBO:0000176" id="MAR05086" name="Fatty Acid Beta Oxidation (C12:3-&gt;C10:2), Peroxisomal" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05086" sboTerm="SBO:0000176" id="R_MAR05086" name="Fatty Acid Beta Oxidation (C12:3-&gt;C10:2), Peroxisomal" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -406306,7 +405596,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05086">
+            <rdf:Description rdf:about="#R_MAR05086">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FAOXC123C102x"/>
@@ -406317,22 +405607,22 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03172x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03172x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03542x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03542x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Mfe2"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05090" sboTerm="SBO:0000176" id="MAR05090" name="Isomerization (C12:3), Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05090" sboTerm="SBO:0000176" id="R_MAR05090" name="Isomerization (C12:3), Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -406341,7 +405631,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05090">
+            <rdf:Description rdf:about="#R_MAR05090">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FAOXC123m"/>
@@ -406352,16 +405642,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03211m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03211m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03172m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03172m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG4598"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05093" sboTerm="SBO:0000176" id="MAR05093" name="Isomerization (C12:3), Peroxisomal" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05093" sboTerm="SBO:0000176" id="R_MAR05093" name="Isomerization (C12:3), Peroxisomal" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -406370,7 +405660,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05093">
+            <rdf:Description rdf:about="#R_MAR05093">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FAOXC123x"/>
@@ -406381,16 +405671,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03211x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03211x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03172x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03172x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Dci"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05095" sboTerm="SBO:0000176" id="MAR05095" name="Fatty Acid Beta Oxidation (C12-&gt;C10), Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05095" sboTerm="SBO:0000176" id="R_MAR05095" name="Fatty Acid Beta Oxidation (C12-&gt;C10), Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -406399,7 +405689,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05095">
+            <rdf:Description rdf:about="#R_MAR05095">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FAOXC120100m"/>
@@ -406411,18 +405701,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01802m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02345m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01802m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02345m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01650m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01803m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01650m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01803m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:and>
@@ -406432,7 +405722,7 @@
           </fbc:and>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05097" sboTerm="SBO:0000176" id="MAR05097" name="Fatty Acid Beta Oxidation (C12-&gt;C10), Peroxisomal" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05097" sboTerm="SBO:0000176" id="R_MAR05097" name="Fatty Acid Beta Oxidation (C12-&gt;C10), Peroxisomal" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -406441,7 +405731,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05097">
+            <rdf:Description rdf:about="#R_MAR05097">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FAOXC120100x"/>
@@ -406453,18 +405743,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02345x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02345x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01650x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02041x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01650x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:and>
@@ -406473,7 +405763,7 @@
           </fbc:and>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05098" sboTerm="SBO:0000176" id="MAR05098" name="Fatty Acid Beta Oxidation (C12-&gt;Ohc12), Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05098" sboTerm="SBO:0000176" id="R_MAR05098" name="Fatty Acid Beta Oxidation (C12-&gt;Ohc12), Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -406482,7 +405772,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05098">
+            <rdf:Description rdf:about="#R_MAR05098">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FAOXC12C12OHm"/>
@@ -406493,13 +405783,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01802m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02345m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01802m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02345m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00174m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01803m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00174m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01803m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:and>
@@ -406508,7 +405798,7 @@
           </fbc:and>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05100" sboTerm="SBO:0000176" id="MAR05100" name="Fatty Acid Beta Oxidation (C12Dc-&gt;C10Dc), Peroxisomal" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05100" sboTerm="SBO:0000176" id="R_MAR05100" name="Fatty Acid Beta Oxidation (C12Dc-&gt;C10Dc), Peroxisomal" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -406517,7 +405807,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05100">
+            <rdf:Description rdf:about="#R_MAR05100">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FAOXC12DCC10DCx"/>
@@ -406528,18 +405818,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03491x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03491x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02041x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03924x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03924x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:and>
@@ -406548,7 +405838,7 @@
           </fbc:and>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05103" sboTerm="SBO:0000185" id="MAR05103" name="Transport of Dodecanedioyl Carnitine into Cytosol" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05103" sboTerm="SBO:0000185" id="R_MAR05103" name="Transport of Dodecanedioyl Carnitine into Cytosol" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -406557,7 +405847,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05103">
+            <rdf:Description rdf:about="#R_MAR05103">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FAOXC12DCTc"/>
@@ -406568,16 +405858,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03490x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03490x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03490c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03490c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="colt"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05104" sboTerm="SBO:0000176" id="MAR05104" name="Formation of Dodecanedioyl Carnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05104" sboTerm="SBO:0000176" id="R_MAR05104" name="Formation of Dodecanedioyl Carnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -406586,7 +405876,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05104">
+            <rdf:Description rdf:about="#R_MAR05104">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FAOXC12DCc"/>
@@ -406597,18 +405887,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03491c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03491c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03490c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03490c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="whd"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05106" sboTerm="SBO:0000176" id="MAR05106" name="Production of Dodecanedioyl Carnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05106" sboTerm="SBO:0000176" id="R_MAR05106" name="Production of Dodecanedioyl Carnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -406617,7 +405907,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05106">
+            <rdf:Description rdf:about="#R_MAR05106">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FAOXC12DCx"/>
@@ -406628,18 +405918,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02348x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03491x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03491x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01597x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03490x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03490x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CROT"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05108" sboTerm="SBO:0000176" id="MAR05108" name="Fatty Acid Beta Oxidation (C13Br-&gt;C11Br), Peroxisomal" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05108" sboTerm="SBO:0000176" id="R_MAR05108" name="Fatty Acid Beta Oxidation (C13Br-&gt;C11Br), Peroxisomal" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -406648,7 +405938,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05108">
+            <rdf:Description rdf:about="#R_MAR05108">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FAOXC13BRC11BRx"/>
@@ -406659,18 +405949,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00948x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00948x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02041x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM04004x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04004x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:and>
@@ -406679,7 +405969,7 @@
           </fbc:and>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05110" sboTerm="SBO:0000176" id="MAR05110" name="Fatty Acid Beta Oxidation (C13-&gt;C11), Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05110" sboTerm="SBO:0000176" id="R_MAR05110" name="Fatty Acid Beta Oxidation (C13-&gt;C11), Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -406688,7 +405978,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05110">
+            <rdf:Description rdf:about="#R_MAR05110">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FAOXC13C11m"/>
@@ -406699,21 +405989,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01802m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03050m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01802m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03050m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01803m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03116m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01803m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03116m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05111" sboTerm="SBO:0000176" id="MAR05111" name="Fatty Acid Beta Oxidation (C14:1-&gt;C12:1), Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05111" sboTerm="SBO:0000176" id="R_MAR05111" name="Fatty Acid Beta Oxidation (C14:1-&gt;C12:1), Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -406722,7 +406012,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05111">
+            <rdf:Description rdf:about="#R_MAR05111">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FAOXC141C121m"/>
@@ -406733,21 +406023,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01802m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03972m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01802m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03972m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01803m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03539m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01803m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03539m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05119" sboTerm="SBO:0000176" id="MAR05119" name="Fatty Acid Beta Xoidation (C14:1-&gt;C12:1), Peroxisomal" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05119" sboTerm="SBO:0000176" id="R_MAR05119" name="Fatty Acid Beta Xoidation (C14:1-&gt;C12:1), Peroxisomal" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -406756,7 +406046,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05119">
+            <rdf:Description rdf:about="#R_MAR05119">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FAOXC141C121x"/>
@@ -406767,18 +406057,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01141x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01141x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00088x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01261x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02041x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00088x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:and>
@@ -406787,7 +406077,7 @@
           </fbc:and>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05120" sboTerm="SBO:0000176" id="MAR05120" name="Fatty Acid Beta Oxidation (C14:1-&gt;C14:1Oh), Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05120" sboTerm="SBO:0000176" id="R_MAR05120" name="Fatty Acid Beta Oxidation (C14:1-&gt;C14:1Oh), Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -406796,7 +406086,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05120">
+            <rdf:Description rdf:about="#R_MAR05120">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FAOXC141C141OHm"/>
@@ -406807,16 +406097,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01802m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03972m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01802m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03972m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01803m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03263m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01803m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03263m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05123" sboTerm="SBO:0000176" id="MAR05123" name="Fatty Acid Beta Oxidation (C14:2-&gt;C12:2), Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05123" sboTerm="SBO:0000176" id="R_MAR05123" name="Fatty Acid Beta Oxidation (C14:2-&gt;C12:2), Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -406825,7 +406115,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05123">
+            <rdf:Description rdf:about="#R_MAR05123">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FAOXC142C122m"/>
@@ -406836,21 +406126,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01802m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03978m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01802m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03978m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01803m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03203m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01803m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03203m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05175" sboTerm="SBO:0000176" id="MAR05175" name="Fatty Acid Beta Oxidation (C14:2-&gt;C12:2), Peroxisomal" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05175" sboTerm="SBO:0000176" id="R_MAR05175" name="Fatty Acid Beta Oxidation (C14:2-&gt;C12:2), Peroxisomal" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -406859,7 +406149,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05175">
+            <rdf:Description rdf:about="#R_MAR05175">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FAOXC142C122x"/>
@@ -406870,18 +406160,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03978x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03978x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02041x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03203x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03203x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:and>
@@ -406890,7 +406180,7 @@
           </fbc:and>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05176" sboTerm="SBO:0000176" id="MAR05176" name="Fatty Acid Beta Oxidation (C14:2-&gt;C14:2Oh), Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05176" sboTerm="SBO:0000176" id="R_MAR05176" name="Fatty Acid Beta Oxidation (C14:2-&gt;C14:2Oh), Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -406899,7 +406189,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05176">
+            <rdf:Description rdf:about="#R_MAR05176">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FAOXC142C142OHm"/>
@@ -406910,16 +406200,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01802m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM04041m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01802m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04041m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01803m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03267m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01803m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03267m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05177" sboTerm="SBO:0000176" id="MAR05177" name="Fatty Acid Beta Oxidation (C14:3-&gt;C12:3), Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05177" sboTerm="SBO:0000176" id="R_MAR05177" name="Fatty Acid Beta Oxidation (C14:3-&gt;C12:3), Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -406928,7 +406218,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05177">
+            <rdf:Description rdf:about="#R_MAR05177">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FAOXC143C123m"/>
@@ -406939,21 +406229,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01802m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03288m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01802m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03288m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01803m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03211m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01803m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03211m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05178" sboTerm="SBO:0000176" id="MAR05178" name="Fatty Acid Beta Oxidation (C14:3-&gt;C12:3), Peroxisomal" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05178" sboTerm="SBO:0000176" id="R_MAR05178" name="Fatty Acid Beta Oxidation (C14:3-&gt;C12:3), Peroxisomal" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -406962,7 +406252,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05178">
+            <rdf:Description rdf:about="#R_MAR05178">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FAOXC143C123x"/>
@@ -406973,18 +406263,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03288x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03288x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02041x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03211x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03211x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:and>
@@ -406993,7 +406283,7 @@
           </fbc:and>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05179" sboTerm="SBO:0000176" id="MAR05179" name="Fatty Acid Beta Oxidation (C14-&gt;C12), Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05179" sboTerm="SBO:0000176" id="R_MAR05179" name="Fatty Acid Beta Oxidation (C14-&gt;C12), Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -407002,7 +406292,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05179">
+            <rdf:Description rdf:about="#R_MAR05179">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FAOXC140120m"/>
@@ -407014,21 +406304,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01802m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02495m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01802m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02495m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01803m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02345m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01803m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02345m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05180" sboTerm="SBO:0000176" id="MAR05180" name="Fatty Acid Beta Oxidation (C14-&gt;C12), Peroxisomal" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05180" sboTerm="SBO:0000176" id="R_MAR05180" name="Fatty Acid Beta Oxidation (C14-&gt;C12), Peroxisomal" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -407037,7 +406327,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05180">
+            <rdf:Description rdf:about="#R_MAR05180">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FAOXC140120x"/>
@@ -407049,18 +406339,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02495x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02495x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02041x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02345x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02345x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:and>
@@ -407069,7 +406359,7 @@
           </fbc:and>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05181" sboTerm="SBO:0000176" id="MAR05181" name="Fatty Acid Beta Oxidation (C14-&gt;C14Oh), Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05181" sboTerm="SBO:0000176" id="R_MAR05181" name="Fatty Acid Beta Oxidation (C14-&gt;C14Oh), Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -407078,7 +406368,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05181">
+            <rdf:Description rdf:about="#R_MAR05181">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FAOXC14C14OHm"/>
@@ -407089,16 +406379,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01802m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02495m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01802m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02495m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00178m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01803m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00178m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01803m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05182" sboTerm="SBO:0000176" id="MAR05182" name="Fatty Acid Beta Oxidation (C14Dc-&gt;C12Dc), Peroxisomal" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05182" sboTerm="SBO:0000176" id="R_MAR05182" name="Fatty Acid Beta Oxidation (C14Dc-&gt;C12Dc), Peroxisomal" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -407107,7 +406397,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05182">
+            <rdf:Description rdf:about="#R_MAR05182">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FAOXC14DCC12DCx"/>
@@ -407118,18 +406408,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03492x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03492x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02041x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03491x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03491x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:and>
@@ -407138,7 +406428,7 @@
           </fbc:and>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05183" sboTerm="SBO:0000176" id="MAR05183" name="Fatty Acid Activation (C15), Peroxisomal" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05183" sboTerm="SBO:0000176" id="R_MAR05183" name="Fatty Acid Activation (C15), Peroxisomal" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -407147,7 +406437,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05183">
+            <rdf:Description rdf:about="#R_MAR05183">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FAOXC15ATPx"/>
@@ -407159,20 +406449,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02766x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02766x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01334x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03887x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03887x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Fatp1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05184" sboTerm="SBO:0000176" id="MAR05184" name="Fatty Acid Beta Oxidation (C15Br-&gt;C13Br), Peroxisomal" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05184" sboTerm="SBO:0000176" id="R_MAR05184" name="Fatty Acid Beta Oxidation (C15Br-&gt;C13Br), Peroxisomal" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -407181,7 +406471,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05184">
+            <rdf:Description rdf:about="#R_MAR05184">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FAOXC15BRC13BRx"/>
@@ -407192,18 +406482,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03887x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03887x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00948x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02041x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02774x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00948x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02774x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:and>
@@ -407212,7 +406502,7 @@
           </fbc:and>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05185" sboTerm="SBO:0000176" id="MAR05185" name="Fatty Acid Beta Oxidation (C15-&gt;C13), Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05185" sboTerm="SBO:0000176" id="R_MAR05185" name="Fatty Acid Beta Oxidation (C15-&gt;C13), Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -407221,7 +406511,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05185">
+            <rdf:Description rdf:about="#R_MAR05185">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FAOXC15C13m"/>
@@ -407232,21 +406522,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01802m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02689m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01802m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02689m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01803m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03050m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01803m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03050m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05186" sboTerm="SBO:0000176" id="MAR05186" name="Fatty Acid Alpha Oxidation (2-Hydroxyphytanoyl Coenzyme A) (NADP), Peroxisomal" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05186" sboTerm="SBO:0000176" id="R_MAR05186" name="Fatty Acid Alpha Oxidation (2-Hydroxyphytanoyl Coenzyme A) (NADP), Peroxisomal" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -407255,7 +406545,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05186">
+            <rdf:Description rdf:about="#R_MAR05186">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FAOXC15NADPx"/>
@@ -407267,18 +406557,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00655x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00655x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01836x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039x" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02555x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02766x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01836x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039x" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02555x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02766x" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05187" sboTerm="SBO:0000176" id="MAR05187" name="Fatty Acid Alpha Oxidation (2-Hydroxyphytanoyl Coenzyme A) (NAD), Peroxisomal" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05187" sboTerm="SBO:0000176" id="R_MAR05187" name="Fatty Acid Alpha Oxidation (2-Hydroxyphytanoyl Coenzyme A) (NAD), Peroxisomal" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -407287,7 +406577,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05187">
+            <rdf:Description rdf:about="#R_MAR05187">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FAOXC15NADx"/>
@@ -407299,18 +406589,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00655x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00655x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01836x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039x" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02553x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02766x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01836x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039x" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02553x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02766x" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05188" sboTerm="SBO:0000176" id="MAR05188" name="Fatty Acid Beta Oxidation (C16:1-&gt;C14:1), Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05188" sboTerm="SBO:0000176" id="R_MAR05188" name="Fatty Acid Beta Oxidation (C16:1-&gt;C14:1), Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -407319,7 +406609,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05188">
+            <rdf:Description rdf:about="#R_MAR05188">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FAOXC161C141m"/>
@@ -407330,21 +406620,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01802m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02677m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01802m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02677m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01803m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03972m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01803m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03972m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05189" sboTerm="SBO:0000176" id="MAR05189" name="Fatty Acid Beta Xoidation (C16:1-&gt;C14:1), Peroxisomal" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05189" sboTerm="SBO:0000176" id="R_MAR05189" name="Fatty Acid Beta Xoidation (C16:1-&gt;C14:1), Peroxisomal" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -407353,7 +406643,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05189">
+            <rdf:Description rdf:about="#R_MAR05189">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FAOXC161C141x"/>
@@ -407364,18 +406654,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01191x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01191x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01141x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01261x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02041x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01141x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:and>
@@ -407384,7 +406674,7 @@
           </fbc:and>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05190" sboTerm="SBO:0000176" id="MAR05190" name="Production of 3-Hydroxyhexadecenoylcoa" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05190" sboTerm="SBO:0000176" id="R_MAR05190" name="Production of 3-Hydroxyhexadecenoylcoa" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -407393,7 +406683,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05190">
+            <rdf:Description rdf:about="#R_MAR05190">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FAOXC161C161OHm"/>
@@ -407404,16 +406694,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01802m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02677m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01802m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02677m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01803m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03216m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01803m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03216m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05191" sboTerm="SBO:0000176" id="MAR05191" name="Fatty Acid Beta Oxidation (C16:2-&gt;C14:2), Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05191" sboTerm="SBO:0000176" id="R_MAR05191" name="Fatty Acid Beta Oxidation (C16:2-&gt;C14:2), Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -407422,7 +406712,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05191">
+            <rdf:Description rdf:about="#R_MAR05191">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FAOXC162C142m"/>
@@ -407433,21 +406723,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01802m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03650m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01802m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03650m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01803m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03978m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01803m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03978m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05192" sboTerm="SBO:0000176" id="MAR05192" name="Fatty Acid Beta Oxidation (C16:2-&gt;C16:2Oh), Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05192" sboTerm="SBO:0000176" id="R_MAR05192" name="Fatty Acid Beta Oxidation (C16:2-&gt;C16:2Oh), Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -407456,7 +406746,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05192">
+            <rdf:Description rdf:about="#R_MAR05192">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FAOXC162C162OHm"/>
@@ -407467,16 +406757,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01802m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03982m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01802m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03982m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01803m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03265m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01803m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03265m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05193" sboTerm="SBO:0000176" id="MAR05193" name="Fatty Acid Beta Oxidation (C16:3-&gt;C14:2), Peroxisomal" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05193" sboTerm="SBO:0000176" id="R_MAR05193" name="Fatty Acid Beta Oxidation (C16:3-&gt;C14:2), Peroxisomal" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -407485,7 +406775,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05193">
+            <rdf:Description rdf:about="#R_MAR05193">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FAOXC163C142x"/>
@@ -407496,22 +406786,22 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03182x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03182x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03978x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03978x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Mfe2"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05194" sboTerm="SBO:0000176" id="MAR05194" name="Fatty Acid Beta Oxidation (C16:3-&gt;C14:3), Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05194" sboTerm="SBO:0000176" id="R_MAR05194" name="Fatty Acid Beta Oxidation (C16:3-&gt;C14:3), Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -407520,7 +406810,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05194">
+            <rdf:Description rdf:about="#R_MAR05194">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FAOXC163C143m"/>
@@ -407531,21 +406821,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01802m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03658m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01802m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03658m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01803m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03288m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01803m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03288m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05195" sboTerm="SBO:0000176" id="MAR05195" name="Fatty Acid Beta Oxidation (C16:3-&gt;C16:4), Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05195" sboTerm="SBO:0000176" id="R_MAR05195" name="Fatty Acid Beta Oxidation (C16:3-&gt;C16:4), Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -407554,7 +406844,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05195">
+            <rdf:Description rdf:about="#R_MAR05195">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FAOXC163C164Gm"/>
@@ -407565,18 +406855,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01802m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03274m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01802m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03274m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01803m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03653m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01803m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03653m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG7461"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05196" sboTerm="SBO:0000176" id="MAR05196" name="Fatty Acid Beta Oxidation (C16:3-&gt;C16:4), Peroxisomal" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05196" sboTerm="SBO:0000176" id="R_MAR05196" name="Fatty Acid Beta Oxidation (C16:3-&gt;C16:4), Peroxisomal" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -407585,7 +406875,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05196">
+            <rdf:Description rdf:about="#R_MAR05196">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FAOXC163C164x"/>
@@ -407596,18 +406886,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02630x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03274x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03274x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02041x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03653x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03653x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="ACOX1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05208" sboTerm="SBO:0000176" id="MAR05208" name="Fatty Acid Beta Oxidation (C16:3-&gt;C14:2), Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05208" sboTerm="SBO:0000176" id="R_MAR05208" name="Fatty Acid Beta Oxidation (C16:3-&gt;C14:2), Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -407616,7 +406906,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05208">
+            <rdf:Description rdf:about="#R_MAR05208">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FAOXC163GC142m"/>
@@ -407627,19 +406917,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03182m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03182m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03978m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03978m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05229" sboTerm="SBO:0000176" id="MAR05229" name="Isomerization (C16:3), Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05229" sboTerm="SBO:0000176" id="R_MAR05229" name="Isomerization (C16:3), Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -407648,7 +406938,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05229">
+            <rdf:Description rdf:about="#R_MAR05229">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FAOXC163Gm"/>
@@ -407659,16 +406949,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03221m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03221m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03182m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03182m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG4598"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05235" sboTerm="SBO:0000176" id="MAR05235" name="Isomerization (C16:3), Peroxisomal" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05235" sboTerm="SBO:0000176" id="R_MAR05235" name="Isomerization (C16:3), Peroxisomal" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -407677,7 +406967,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05235">
+            <rdf:Description rdf:about="#R_MAR05235">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FAOXC163x"/>
@@ -407688,16 +406978,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03221x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03221x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03182x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03182x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Dci"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05242" sboTerm="SBO:0000176" id="MAR05242" name="Fatty Acid Beta Oxidation (C16:4-&gt;C14:3), Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05242" sboTerm="SBO:0000176" id="R_MAR05242" name="Fatty Acid Beta Oxidation (C16:4-&gt;C14:3), Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -407706,7 +406996,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05242">
+            <rdf:Description rdf:about="#R_MAR05242">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FAOXC164C143m"/>
@@ -407717,19 +407007,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03181m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03181m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03288m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03288m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05256" sboTerm="SBO:0000176" id="MAR05256" name="Fatty Acid Beta Oxidation (C16:4-&gt;C14:3), Peroxisomal" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05256" sboTerm="SBO:0000176" id="R_MAR05256" name="Fatty Acid Beta Oxidation (C16:4-&gt;C14:3), Peroxisomal" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -407738,7 +407028,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05256">
+            <rdf:Description rdf:about="#R_MAR05256">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FAOXC164C143x"/>
@@ -407749,22 +407039,22 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03181x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03181x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03288x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03288x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Mfe2"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05298" sboTerm="SBO:0000176" id="MAR05298" name="Fatty Acid Beta Oxidation (C16:4-&gt;C16:5), Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05298" sboTerm="SBO:0000176" id="R_MAR05298" name="Fatty Acid Beta Oxidation (C16:4-&gt;C16:5), Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -407773,7 +407063,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05298">
+            <rdf:Description rdf:about="#R_MAR05298">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FAOXC164C165m"/>
@@ -407784,18 +407074,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01802m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03273m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01802m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03273m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01803m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03656m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01803m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03656m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG7461"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05300" sboTerm="SBO:0000176" id="MAR05300" name="Fatty Acid Beta Oxidation (C16:4-&gt;C16:5), Peroxisomal" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05300" sboTerm="SBO:0000176" id="R_MAR05300" name="Fatty Acid Beta Oxidation (C16:4-&gt;C16:5), Peroxisomal" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -407804,7 +407094,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05300">
+            <rdf:Description rdf:about="#R_MAR05300">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FAOXC164C165x"/>
@@ -407815,18 +407105,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02630x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03273x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03273x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02041x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03656x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03656x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="ACOX1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05306" sboTerm="SBO:0000176" id="MAR05306" name="Isomerization (C16:4), Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05306" sboTerm="SBO:0000176" id="R_MAR05306" name="Isomerization (C16:4), Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -407835,7 +407125,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05306">
+            <rdf:Description rdf:about="#R_MAR05306">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FAOXC164m"/>
@@ -407846,16 +407136,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03220m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03220m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03181m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03181m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG4598"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05309" sboTerm="SBO:0000176" id="MAR05309" name="Isomerization (C16:4), Peroxisomal" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05309" sboTerm="SBO:0000176" id="R_MAR05309" name="Isomerization (C16:4), Peroxisomal" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -407864,7 +407154,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05309">
+            <rdf:Description rdf:about="#R_MAR05309">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FAOXC164x"/>
@@ -407875,16 +407165,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03220x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03220x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03181x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03181x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Dci"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05323" sboTerm="SBO:0000176" id="MAR05323" name="Fatty Acid Activation (C16Br), Peroxisomal" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05323" sboTerm="SBO:0000176" id="R_MAR05323" name="Fatty Acid Activation (C16Br), Peroxisomal" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -407893,7 +407183,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05323">
+            <rdf:Description rdf:about="#R_MAR05323">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FAOXC16Brx"/>
@@ -407905,20 +407195,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03884x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03884x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01334x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02747x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02747x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Fatp1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05325" sboTerm="SBO:0000176" id="MAR05325" name="Fatty Acid Beta Oxidation (C16-&gt;C14), Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05325" sboTerm="SBO:0000176" id="R_MAR05325" name="Fatty Acid Beta Oxidation (C16-&gt;C14), Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -407927,7 +407217,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05325">
+            <rdf:Description rdf:about="#R_MAR05325">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FAOXC160140m"/>
@@ -407939,21 +407229,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01802m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02678m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01802m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02678m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01803m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02495m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01803m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02495m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05327" sboTerm="SBO:0000176" id="MAR05327" name="Fatty Acid Beta Oxidation (C16-&gt;C14), Peroxisomal" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05327" sboTerm="SBO:0000176" id="R_MAR05327" name="Fatty Acid Beta Oxidation (C16-&gt;C14), Peroxisomal" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -407962,7 +407252,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05327">
+            <rdf:Description rdf:about="#R_MAR05327">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FAOXC160140x"/>
@@ -407974,18 +407264,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02678x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02678x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02041x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02495x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02495x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:and>
@@ -407994,7 +407284,7 @@
           </fbc:and>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05329" sboTerm="SBO:0000176" id="MAR05329" name="Fatty Acid Beta Oxidation (C16-&gt;C16Oh), Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05329" sboTerm="SBO:0000176" id="R_MAR05329" name="Fatty Acid Beta Oxidation (C16-&gt;C16Oh), Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -408003,7 +407293,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05329">
+            <rdf:Description rdf:about="#R_MAR05329">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FAOXC16C16OHm"/>
@@ -408014,16 +407304,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01802m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02678m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01802m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02678m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01803m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03218m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01803m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03218m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05331" sboTerm="SBO:0000176" id="MAR05331" name="Fatty Acid Beta Oxidation (C16Dc-&gt;C14Dc), Peroxisomal" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05331" sboTerm="SBO:0000176" id="R_MAR05331" name="Fatty Acid Beta Oxidation (C16Dc-&gt;C14Dc), Peroxisomal" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -408032,7 +407322,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05331">
+            <rdf:Description rdf:about="#R_MAR05331">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FAOXC16DCC14DCx"/>
@@ -408043,18 +407333,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03655x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03655x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02041x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03492x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03492x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:and>
@@ -408063,7 +407353,7 @@
           </fbc:and>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05334" sboTerm="SBO:0000176" id="MAR05334" name="Fatty Acid Activation (C16Dc), Endoplasmatic Reticulum" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05334" sboTerm="SBO:0000176" id="R_MAR05334" name="Fatty Acid Activation (C16Dc), Endoplasmatic Reticulum" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -408072,7 +407362,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05334">
+            <rdf:Description rdf:about="#R_MAR05334">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FAOXC16DCr"/>
@@ -408083,20 +407373,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03654r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03654r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01334r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03655r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03655r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG3961"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05343" sboTerm="SBO:0000176" id="MAR05343" name="Fatty Acid Beta Oxidation (C17-&gt;C15), Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05343" sboTerm="SBO:0000176" id="R_MAR05343" name="Fatty Acid Beta Oxidation (C17-&gt;C15), Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -408105,7 +407395,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05343">
+            <rdf:Description rdf:about="#R_MAR05343">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FAOXC170150m"/>
@@ -408117,21 +407407,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01802m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02101m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01802m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02101m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01803m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02689m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01803m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02689m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05345" sboTerm="SBO:0000176" id="MAR05345" name="Fatty Acid Beta Oxidation (C18:1-&gt;C16:1), Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05345" sboTerm="SBO:0000176" id="R_MAR05345" name="Fatty Acid Beta Oxidation (C18:1-&gt;C16:1), Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -408140,7 +407430,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05345">
+            <rdf:Description rdf:about="#R_MAR05345">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FAOXC181C161m"/>
@@ -408151,21 +407441,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01802m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03791m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01802m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03791m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01803m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02677m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01803m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02677m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05350" sboTerm="SBO:0000176" id="MAR05350" name="Fatty Acid Beta Xoidation (C18:1-&gt;C16:1), Peroxisomal" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05350" sboTerm="SBO:0000176" id="R_MAR05350" name="Fatty Acid Beta Xoidation (C18:1-&gt;C16:1), Peroxisomal" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -408174,7 +407464,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05350">
+            <rdf:Description rdf:about="#R_MAR05350">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FAOXC181C161x"/>
@@ -408185,18 +407475,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03789x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03789x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01191x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01261x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02041x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01191x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:and>
@@ -408205,7 +407495,7 @@
           </fbc:and>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05355" sboTerm="SBO:0000176" id="MAR05355" name="Fatty Acid Beta Oxidation (C18:1-&gt;C18:1Oh), Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05355" sboTerm="SBO:0000176" id="R_MAR05355" name="Fatty Acid Beta Oxidation (C18:1-&gt;C18:1Oh), Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -408214,7 +407504,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05355">
+            <rdf:Description rdf:about="#R_MAR05355">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FAOXC181C181OHm"/>
@@ -408225,16 +407515,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01802m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03792m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01802m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03792m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01803m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03252m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01803m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03252m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05356" sboTerm="SBO:0000176" id="MAR05356" name="Fatty Acid Beta Oxidation (C18:2-&gt;C16:2), Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05356" sboTerm="SBO:0000176" id="R_MAR05356" name="Fatty Acid Beta Oxidation (C18:2-&gt;C16:2), Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -408243,7 +407533,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05356">
+            <rdf:Description rdf:about="#R_MAR05356">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FAOXC182C162m"/>
@@ -408254,21 +407544,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01802m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02391m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01802m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02391m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01803m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03650m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01803m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03650m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05357" sboTerm="SBO:0000176" id="MAR05357" name="Fatty Acid Beta Oxidation (C18:2-&gt;C18:2Oh), Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05357" sboTerm="SBO:0000176" id="R_MAR05357" name="Fatty Acid Beta Oxidation (C18:2-&gt;C18:2Oh), Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -408277,7 +407567,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05357">
+            <rdf:Description rdf:about="#R_MAR05357">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FAOXC182C182OHm"/>
@@ -408288,16 +407578,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01802m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02391m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01802m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02391m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01803m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03249m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01803m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03249m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05358" sboTerm="SBO:0000176" id="MAR05358" name="Fatty Acid Beta Oxidation (C18:3-&gt;C16:3), Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05358" sboTerm="SBO:0000176" id="R_MAR05358" name="Fatty Acid Beta Oxidation (C18:3-&gt;C16:3), Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -408306,7 +407596,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05358">
+            <rdf:Description rdf:about="#R_MAR05358">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FAOXC183C163Gm"/>
@@ -408317,21 +407607,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01802m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01934m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01802m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01934m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01803m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03274m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01803m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03274m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05359" sboTerm="SBO:0000176" id="MAR05359" name="Fatty Acid Beta Oxidation (C18:3-&gt;C16:3), Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05359" sboTerm="SBO:0000176" id="R_MAR05359" name="Fatty Acid Beta Oxidation (C18:3-&gt;C16:3), Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -408340,7 +407630,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05359">
+            <rdf:Description rdf:about="#R_MAR05359">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FAOXC183C163m"/>
@@ -408351,21 +407641,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01802m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02390m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01802m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02390m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01803m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03658m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01803m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03658m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05360" sboTerm="SBO:0000176" id="MAR05360" name="Fatty Acid Beta Oxidation (C18:4-&gt;C16:3), Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05360" sboTerm="SBO:0000176" id="R_MAR05360" name="Fatty Acid Beta Oxidation (C18:4-&gt;C16:3), Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -408374,7 +407664,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05360">
+            <rdf:Description rdf:about="#R_MAR05360">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FAOXC184C163m"/>
@@ -408385,19 +407675,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03194m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03194m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03274m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03274m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05364" sboTerm="SBO:0000176" id="MAR05364" name="Fatty Acid Beta Oxidation (C18:4-&gt;C16:3), Peroxisomal" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05364" sboTerm="SBO:0000176" id="R_MAR05364" name="Fatty Acid Beta Oxidation (C18:4-&gt;C16:3), Peroxisomal" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -408406,7 +407696,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05364">
+            <rdf:Description rdf:about="#R_MAR05364">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FAOXC184C163x"/>
@@ -408417,22 +407707,22 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03194x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03194x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03274x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03274x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Mfe2"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05365" sboTerm="SBO:0000176" id="MAR05365" name="Fatty Acid Beta Oxidation (C18:4-&gt;C16:4), Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05365" sboTerm="SBO:0000176" id="R_MAR05365" name="Fatty Acid Beta Oxidation (C18:4-&gt;C16:4), Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -408441,7 +407731,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05365">
+            <rdf:Description rdf:about="#R_MAR05365">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FAOXC184C164m"/>
@@ -408452,21 +407742,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00108m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01802m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00108m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01802m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01803m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03273m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01803m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03273m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05366" sboTerm="SBO:0000176" id="MAR05366" name="Fatty Acid Beta Oxidation (C18:4-&gt;C16:4), Peroxisomal" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05366" sboTerm="SBO:0000176" id="R_MAR05366" name="Fatty Acid Beta Oxidation (C18:4-&gt;C16:4), Peroxisomal" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -408475,7 +407765,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05366">
+            <rdf:Description rdf:about="#R_MAR05366">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FAOXC184C164x"/>
@@ -408486,18 +407776,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00108x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00108x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02041x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03273x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03273x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:and>
@@ -408506,7 +407796,7 @@
           </fbc:and>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05367" sboTerm="SBO:0000176" id="MAR05367" name="Isomerization of (C18:4), Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05367" sboTerm="SBO:0000176" id="R_MAR05367" name="Isomerization of (C18:4), Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -408515,7 +407805,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05367">
+            <rdf:Description rdf:about="#R_MAR05367">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FAOXC184m"/>
@@ -408526,16 +407816,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03254m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03254m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03194m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03194m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG4598"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05368" sboTerm="SBO:0000176" id="MAR05368" name="Isomerization (C18:4), Peroxisomal" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05368" sboTerm="SBO:0000176" id="R_MAR05368" name="Isomerization (C18:4), Peroxisomal" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -408544,7 +407834,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05368">
+            <rdf:Description rdf:about="#R_MAR05368">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FAOXC184x"/>
@@ -408555,16 +407845,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03254x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03254x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03194x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03194x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Dci"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05369" sboTerm="SBO:0000176" id="MAR05369" name="Fatty Acid Beta Oxidation (C18:5-&gt;C16:4), Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05369" sboTerm="SBO:0000176" id="R_MAR05369" name="Fatty Acid Beta Oxidation (C18:5-&gt;C16:4), Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -408573,7 +407863,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05369">
+            <rdf:Description rdf:about="#R_MAR05369">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FAOXC185C164m"/>
@@ -408584,19 +407874,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03195m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03195m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03273m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03273m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05370" sboTerm="SBO:0000176" id="MAR05370" name="Isomerization (C18:5), Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05370" sboTerm="SBO:0000176" id="R_MAR05370" name="Isomerization (C18:5), Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -408605,7 +407895,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05370">
+            <rdf:Description rdf:about="#R_MAR05370">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FAOXC185m"/>
@@ -408616,16 +407906,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03255m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03255m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03195m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03195m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG4598"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05371" sboTerm="SBO:0000176" id="MAR05371" name="Fatty Acid Beta Oxidation (C18-&gt;C18Oh), Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05371" sboTerm="SBO:0000176" id="R_MAR05371" name="Fatty Acid Beta Oxidation (C18-&gt;C18Oh), Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -408634,7 +407924,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05371">
+            <rdf:Description rdf:about="#R_MAR05371">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FAOXC18C18OHm"/>
@@ -408645,16 +407935,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01802m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02941m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01802m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02941m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01803m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03230m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01803m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03230m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05372" sboTerm="SBO:0000176" id="MAR05372" name="Fatty Acid Beta Xoidation (C20:1-&gt;C18:1), Peroxisomal" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05372" sboTerm="SBO:0000176" id="R_MAR05372" name="Fatty Acid Beta Xoidation (C20:1-&gt;C18:1), Peroxisomal" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -408663,7 +407953,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05372">
+            <rdf:Description rdf:about="#R_MAR05372">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FAOXC201C181x"/>
@@ -408674,18 +407964,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03567x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03567x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02041x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03789x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03789x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:and>
@@ -408694,7 +407984,7 @@
           </fbc:and>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05373" sboTerm="SBO:0000176" id="MAR05373" name="Fatty Acid Beta Oxidation (C20:4-&gt;C18:4), Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05373" sboTerm="SBO:0000176" id="R_MAR05373" name="Fatty Acid Beta Oxidation (C20:4-&gt;C18:4), Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -408703,7 +407993,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05373">
+            <rdf:Description rdf:about="#R_MAR05373">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FAOXC204C184m"/>
@@ -408714,21 +408004,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01802m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03571m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01802m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03571m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01803m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03254m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01803m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03254m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05374" sboTerm="SBO:0000176" id="MAR05374" name="Fatty Acid Beta Oxidation (C20:4-&gt;C20:5), Peroxisomal" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05374" sboTerm="SBO:0000176" id="R_MAR05374" name="Fatty Acid Beta Oxidation (C20:4-&gt;C20:5), Peroxisomal" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -408737,7 +408027,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05374">
+            <rdf:Description rdf:about="#R_MAR05374">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FAOXC204C205x"/>
@@ -408748,18 +408038,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02630x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03571x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03571x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02041x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03570x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03570x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="ACOX1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05375" sboTerm="SBO:0000176" id="MAR05375" name="Fatty Acid Beta Oxidation (C20:5-&gt;C18:4), Peroxisomal" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05375" sboTerm="SBO:0000176" id="R_MAR05375" name="Fatty Acid Beta Oxidation (C20:5-&gt;C18:4), Peroxisomal" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -408768,7 +408058,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05375">
+            <rdf:Description rdf:about="#R_MAR05375">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FAOXC205C184x"/>
@@ -408779,22 +408069,22 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03570x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03570x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03254x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03254x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Mfe2"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05376" sboTerm="SBO:0000176" id="MAR05376" name="Fatty Acid Beta Oxidation (C20:5-&gt;C18:5), Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05376" sboTerm="SBO:0000176" id="R_MAR05376" name="Fatty Acid Beta Oxidation (C20:5-&gt;C18:5), Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -408803,7 +408093,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05376">
+            <rdf:Description rdf:about="#R_MAR05376">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FAOXC205C185m"/>
@@ -408814,21 +408104,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01802m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03284m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01802m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03284m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01803m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03255m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01803m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03255m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05377" sboTerm="SBO:0000176" id="MAR05377" name="Fatty Acid Beta Oxidation (C22:1-&gt;C20:1), Peroxisomal" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05377" sboTerm="SBO:0000176" id="R_MAR05377" name="Fatty Acid Beta Oxidation (C22:1-&gt;C20:1), Peroxisomal" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -408837,7 +408127,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05377">
+            <rdf:Description rdf:about="#R_MAR05377">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FAOXC221C201x"/>
@@ -408848,18 +408138,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03555x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03555x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02041x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03567x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03567x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:and>
@@ -408868,7 +408158,7 @@
           </fbc:and>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05378" sboTerm="SBO:0000176" id="MAR05378" name="Fatty Acid Beta Oxidation (C22:5-&gt;C20:4), Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05378" sboTerm="SBO:0000176" id="R_MAR05378" name="Fatty Acid Beta Oxidation (C22:5-&gt;C20:4), Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -408877,7 +408167,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05378">
+            <rdf:Description rdf:about="#R_MAR05378">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FAOXC225C204m"/>
@@ -408888,19 +408178,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03171m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03171m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03571m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03571m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05379" sboTerm="SBO:0000176" id="MAR05379" name="Fatty Acid Beta Oxidation (C22:5-&gt;C20:4), Peroxisomal" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05379" sboTerm="SBO:0000176" id="R_MAR05379" name="Fatty Acid Beta Oxidation (C22:5-&gt;C20:4), Peroxisomal" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -408909,7 +408199,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05379">
+            <rdf:Description rdf:about="#R_MAR05379">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FAOXC225C204x"/>
@@ -408920,22 +408210,22 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03171x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03171x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03571x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03571x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Mfe2"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05380" sboTerm="SBO:0000176" id="MAR05380" name="Fatty Acid Beta Oxidation (C22:5-&gt;C22:6), Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05380" sboTerm="SBO:0000176" id="R_MAR05380" name="Fatty Acid Beta Oxidation (C22:5-&gt;C22:6), Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -408944,7 +408234,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05380">
+            <rdf:Description rdf:about="#R_MAR05380">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FAOXC225C226m"/>
@@ -408955,18 +408245,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00093m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01802m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00093m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01802m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01803m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03557m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01803m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03557m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG7461"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05382" sboTerm="SBO:0000176" id="MAR05382" name="Fatty Acid Beta Oxidation (C22:5-&gt;C22:6), Peroxisomal" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05382" sboTerm="SBO:0000176" id="R_MAR05382" name="Fatty Acid Beta Oxidation (C22:5-&gt;C22:6), Peroxisomal" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -408975,7 +408265,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05382">
+            <rdf:Description rdf:about="#R_MAR05382">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FAOXC225C226x"/>
@@ -408986,18 +408276,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00093x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00093x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02041x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03557x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03557x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="ACOX1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05383" sboTerm="SBO:0000176" id="MAR05383" name="Isomerization (C22:5), Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05383" sboTerm="SBO:0000176" id="R_MAR05383" name="Isomerization (C22:5), Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -409006,7 +408296,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05383">
+            <rdf:Description rdf:about="#R_MAR05383">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FAOXC225m"/>
@@ -409017,16 +408307,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03210m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03210m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03171m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03171m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG4598"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05402" sboTerm="SBO:0000176" id="MAR05402" name="Isomerization (C22:5), Peroxisomal" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05402" sboTerm="SBO:0000176" id="R_MAR05402" name="Isomerization (C22:5), Peroxisomal" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -409035,7 +408325,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05402">
+            <rdf:Description rdf:about="#R_MAR05402">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FAOXC225x"/>
@@ -409046,16 +408336,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03210x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03210x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03171x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03171x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Dci"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05403" sboTerm="SBO:0000176" id="MAR05403" name="Fatty Acid Beta Oxidation (C22:6-&gt;C20:5), Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05403" sboTerm="SBO:0000176" id="R_MAR05403" name="Fatty Acid Beta Oxidation (C22:6-&gt;C20:5), Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -409064,7 +408354,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05403">
+            <rdf:Description rdf:about="#R_MAR05403">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FAOXC226C205m"/>
@@ -409075,19 +408365,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02831m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02831m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03284m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03284m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05408" sboTerm="SBO:0000176" id="MAR05408" name="Fatty Acid Beta Oxidation (C22:6-&gt;C22:7), Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05408" sboTerm="SBO:0000176" id="R_MAR05408" name="Fatty Acid Beta Oxidation (C22:6-&gt;C22:7), Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -409096,7 +408386,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05408">
+            <rdf:Description rdf:about="#R_MAR05408">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FAOXC226C227m"/>
@@ -409107,18 +408397,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00095m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01802m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00095m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01802m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01803m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03556m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01803m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03556m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG7461"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05410" sboTerm="SBO:0000176" id="MAR05410" name="Isomerization (C22:6), Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05410" sboTerm="SBO:0000176" id="R_MAR05410" name="Isomerization (C22:6), Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -409127,7 +408417,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05410">
+            <rdf:Description rdf:about="#R_MAR05410">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FAOXC226m"/>
@@ -409138,16 +408428,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03559m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03559m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02831m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02831m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG4598"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05421" sboTerm="SBO:0000176" id="MAR05421" name="Fatty Acid Beta Oxidation (C22-&gt;C20), Peroxisomal" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05421" sboTerm="SBO:0000176" id="R_MAR05421" name="Fatty Acid Beta Oxidation (C22-&gt;C20), Peroxisomal" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -409156,7 +408446,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05421">
+            <rdf:Description rdf:about="#R_MAR05421">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FAOXC22C20x"/>
@@ -409167,18 +408457,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01725x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01725x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01773x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02041x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01773x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:and>
@@ -409187,7 +408477,7 @@
           </fbc:and>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05428" sboTerm="SBO:0000176" id="MAR05428" name="Fatty Acid Beta Oxidation (C24:1-&gt;C22:1), Peroxisomal" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05428" sboTerm="SBO:0000176" id="R_MAR05428" name="Fatty Acid Beta Oxidation (C24:1-&gt;C22:1), Peroxisomal" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -409196,7 +408486,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05428">
+            <rdf:Description rdf:about="#R_MAR05428">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FAOXC241C221x"/>
@@ -409207,18 +408497,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00025x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00025x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02041x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03555x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03555x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:and>
@@ -409227,7 +408517,7 @@
           </fbc:and>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05431" sboTerm="SBO:0000176" id="MAR05431" name="Fatty Acid Beta Oxidation (C24-&gt;C22), Peroxisomal" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05431" sboTerm="SBO:0000176" id="R_MAR05431" name="Fatty Acid Beta Oxidation (C24-&gt;C22), Peroxisomal" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -409236,7 +408526,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05431">
+            <rdf:Description rdf:about="#R_MAR05431">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FAOXC24C22x"/>
@@ -409247,18 +408537,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02971x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02971x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01725x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02041x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01725x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:and>
@@ -409267,7 +408557,7 @@
           </fbc:and>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05434" sboTerm="SBO:0000176" id="MAR05434" name="Malonylcoa-&gt;Malonylcarnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05434" sboTerm="SBO:0000176" id="R_MAR05434" name="Malonylcoa-&gt;Malonylcarnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -409276,7 +408566,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05434">
+            <rdf:Description rdf:about="#R_MAR05434">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FAOXC3DC"/>
@@ -409287,18 +408577,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02444c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02444c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03494c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03494c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="whd"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05449" sboTerm="SBO:0000176" id="MAR05449" name="Fatty Acid Beta Oxidation (C4-&gt;C2), Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05449" sboTerm="SBO:0000176" id="R_MAR05449" name="Fatty Acid Beta Oxidation (C4-&gt;C2), Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -409307,7 +408597,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05449">
+            <rdf:Description rdf:about="#R_MAR05449">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FAOXC4020m"/>
@@ -409319,17 +408609,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01412m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01802m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01412m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01802m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261m" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM01803m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261m" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01803m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:and>
@@ -409339,7 +408629,7 @@
           </fbc:and>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05456" sboTerm="SBO:0000176" id="MAR05456" name="Succ-&gt;C4Dcc" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05456" sboTerm="SBO:0000176" id="R_MAR05456" name="Succ-&gt;C4Dcc" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -409348,7 +408638,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05456">
+            <rdf:Description rdf:about="#R_MAR05456">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FAOXC4C4DCc"/>
@@ -409359,18 +408649,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02944c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02944c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03495c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03495c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="whd"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05988" sboTerm="SBO:0000176" id="MAR05988" name="Fatty Acid Beta Oxidation (C5-&gt;C3), Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05988" sboTerm="SBO:0000176" id="R_MAR05988" name="Fatty Acid Beta Oxidation (C5-&gt;C3), Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -409379,7 +408669,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05988">
+            <rdf:Description rdf:about="#R_MAR05988">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FAOXC5C3x"/>
@@ -409390,18 +408680,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01802m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02694m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01802m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02694m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01803m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02774m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01803m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02774m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:and>
@@ -409411,7 +408701,7 @@
           </fbc:and>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05991" sboTerm="SBO:0000176" id="MAR05991" name="Production of Glutaryl Carnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05991" sboTerm="SBO:0000176" id="R_MAR05991" name="Production of Glutaryl Carnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -409421,7 +408711,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05991">
+            <rdf:Description rdf:about="#R_MAR05991">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FAOXC5C5DCc"/>
@@ -409432,19 +408722,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01977c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01977c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03497c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03497c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="whd"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR05999" sboTerm="SBO:0000176" id="MAR05999" name="Fatty Acid Beta Oxidation (C5-&gt;C5Oh), Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05999" sboTerm="SBO:0000176" id="R_MAR05999" name="Fatty Acid Beta Oxidation (C5-&gt;C5Oh), Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -409453,7 +408743,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05999">
+            <rdf:Description rdf:about="#R_MAR05999">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FAOXC5C5OHm"/>
@@ -409464,14 +408754,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00826m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00826m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03242m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03242m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR06278" sboTerm="SBO:0000176" id="MAR06278" name=" (3-Hydroxyisovalerylcoa-&gt;3-Hydroxyisovalerylcarnitine)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06278" sboTerm="SBO:0000176" id="R_MAR06278" name=" (3-Hydroxyisovalerylcoa-&gt;3-Hydroxyisovalerylcarnitine)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -409481,7 +408771,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06278">
+            <rdf:Description rdf:about="#R_MAR06278">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FAOXC5OHc"/>
@@ -409492,18 +408782,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03242c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03242c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03243c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03243c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="whd"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06279" sboTerm="SBO:0000176" id="MAR06279" name="Fatty Acid Beta Oxidation (C6:1-&gt;C4:0), Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06279" sboTerm="SBO:0000176" id="R_MAR06279" name="Fatty Acid Beta Oxidation (C6:1-&gt;C4:0), Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -409512,7 +408802,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06279">
+            <rdf:Description rdf:about="#R_MAR06279">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FAOXC61C4m"/>
@@ -409523,16 +408813,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00053m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00053m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01412m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01412m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:and>
@@ -409541,7 +408831,7 @@
           </fbc:and>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06280" sboTerm="SBO:0000176" id="MAR06280" name="Fatty Acid Beta Oxidation (C6:1-&gt;C4:0), Peroxisomal" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06280" sboTerm="SBO:0000176" id="R_MAR06280" name="Fatty Acid Beta Oxidation (C6:1-&gt;C4:0), Peroxisomal" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -409550,7 +408840,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06280">
+            <rdf:Description rdf:about="#R_MAR06280">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FAOXC61C4x"/>
@@ -409561,22 +408851,22 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00053x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00053x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01412x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01412x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Mfe2"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06281" sboTerm="SBO:0000176" id="MAR06281" name="Isomerization (C6:1), Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06281" sboTerm="SBO:0000176" id="R_MAR06281" name="Isomerization (C6:1), Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -409585,7 +408875,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06281">
+            <rdf:Description rdf:about="#R_MAR06281">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FAOXC61m"/>
@@ -409596,16 +408886,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03659m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03659m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00053m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00053m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG4598"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06282" sboTerm="SBO:0000176" id="MAR06282" name="Isomerization (C6:1), Peroxisomal" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06282" sboTerm="SBO:0000176" id="R_MAR06282" name="Isomerization (C6:1), Peroxisomal" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -409614,7 +408904,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06282">
+            <rdf:Description rdf:about="#R_MAR06282">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FAOXC61x"/>
@@ -409625,16 +408915,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03659x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03659x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00053x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00053x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Dci"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06283" sboTerm="SBO:0000176" id="MAR06283" name="Fatty Acid Beta Oxidation (C6-&gt;C4), Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06283" sboTerm="SBO:0000176" id="R_MAR06283" name="Fatty Acid Beta Oxidation (C6-&gt;C4), Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -409643,7 +408933,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06283">
+            <rdf:Description rdf:about="#R_MAR06283">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FAOXC6C4m"/>
@@ -409654,18 +408944,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01802m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02122m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01802m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02122m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01412m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01803m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01412m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01803m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:and>
@@ -409675,7 +408965,7 @@
           </fbc:and>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06284" sboTerm="SBO:0000176" id="MAR06284" name="Fatty Acid Beta Oxidation (C6-&gt;C4), Peroxisomal" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06284" sboTerm="SBO:0000176" id="R_MAR06284" name="Fatty Acid Beta Oxidation (C6-&gt;C4), Peroxisomal" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -409684,7 +408974,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06284">
+            <rdf:Description rdf:about="#R_MAR06284">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FAOXC6C4x"/>
@@ -409695,18 +408985,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02122x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02122x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01412x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02041x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01412x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:and>
@@ -409715,7 +409005,7 @@
           </fbc:and>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06285" sboTerm="SBO:0000176" id="MAR06285" name="Fatty Acid Beta Oxidation (C6Dc-&gt;C4Dc), Peroxisomal" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06285" sboTerm="SBO:0000176" id="R_MAR06285" name="Fatty Acid Beta Oxidation (C6Dc-&gt;C4Dc), Peroxisomal" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -409724,7 +409014,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06285">
+            <rdf:Description rdf:about="#R_MAR06285">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FAOXC6DCC4DCx"/>
@@ -409735,18 +409025,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03409x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03409x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02041x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02944x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02944x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:and>
@@ -409755,7 +409045,7 @@
           </fbc:and>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06319" sboTerm="SBO:0000176" id="MAR06319" name="Fatty Acid Beta Oxidation (C7-&gt;C5), Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06319" sboTerm="SBO:0000176" id="R_MAR06319" name="Fatty Acid Beta Oxidation (C7-&gt;C5), Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -409764,7 +409054,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06319">
+            <rdf:Description rdf:about="#R_MAR06319">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FAOXC7C5m"/>
@@ -409775,18 +409065,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01802m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02107m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01802m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02107m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01803m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02694m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01803m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02694m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:and>
@@ -409796,7 +409086,7 @@
           </fbc:and>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06320" sboTerm="SBO:0000176" id="MAR06320" name="Fatty Acid Beta Oxidation (C8:1-&gt;C6:1), Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06320" sboTerm="SBO:0000176" id="R_MAR06320" name="Fatty Acid Beta Oxidation (C8:1-&gt;C6:1), Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -409805,7 +409095,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06320">
+            <rdf:Description rdf:about="#R_MAR06320">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FAOXC81C61m"/>
@@ -409816,18 +409106,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01802m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03794m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01802m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03794m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01803m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03659m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01803m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03659m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:and>
@@ -409837,7 +409127,7 @@
           </fbc:and>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06322" sboTerm="SBO:0000176" id="MAR06322" name="Fatty Acid Beta Oxidation (C8:1-&gt;C6:1), Peroxisomal" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06322" sboTerm="SBO:0000176" id="R_MAR06322" name="Fatty Acid Beta Oxidation (C8:1-&gt;C6:1), Peroxisomal" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -409846,7 +409136,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06322">
+            <rdf:Description rdf:about="#R_MAR06322">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FAOXC81C61x"/>
@@ -409857,18 +409147,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03794x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03794x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02041x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03659x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03659x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:and>
@@ -409877,7 +409167,7 @@
           </fbc:and>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06329" sboTerm="SBO:0000176" id="MAR06329" name="Fatty Acid Beta Oxidation (C8-&gt;C6), Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06329" sboTerm="SBO:0000176" id="R_MAR06329" name="Fatty Acid Beta Oxidation (C8-&gt;C6), Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -409886,7 +409176,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06329">
+            <rdf:Description rdf:about="#R_MAR06329">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FAOXC8C6m"/>
@@ -409897,18 +409187,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01802m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02644m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01802m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02644m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01803m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02122m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01803m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02122m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:and>
@@ -409918,7 +409208,7 @@
           </fbc:and>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06344" sboTerm="SBO:0000176" id="MAR06344" name="Fatty Acid Beta Oxidation (C8-&gt;C6), Peroxisomal" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06344" sboTerm="SBO:0000176" id="R_MAR06344" name="Fatty Acid Beta Oxidation (C8-&gt;C6), Peroxisomal" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -409927,7 +409217,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06344">
+            <rdf:Description rdf:about="#R_MAR06344">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FAOXC8C6x"/>
@@ -409938,18 +409228,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02644x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02644x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02041x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02122x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02122x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:and>
@@ -409958,7 +409248,7 @@
           </fbc:and>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06345" sboTerm="SBO:0000176" id="MAR06345" name="Fatty Acid Beta Oxidation (C8Dc-&gt;C6Dc), Peroxisomal" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06345" sboTerm="SBO:0000176" id="R_MAR06345" name="Fatty Acid Beta Oxidation (C8Dc-&gt;C6Dc), Peroxisomal" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -409967,7 +409257,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06345">
+            <rdf:Description rdf:about="#R_MAR06345">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FAOXC8DCC6DCx"/>
@@ -409978,18 +409268,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03922x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03922x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02041x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03409x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03409x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:and>
@@ -409998,7 +409288,7 @@
           </fbc:and>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06346" sboTerm="SBO:0000176" id="MAR06346" name="Fatty Acid Beta Oxidation (C9Br-&gt;C7Br), Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06346" sboTerm="SBO:0000176" id="R_MAR06346" name="Fatty Acid Beta Oxidation (C9Br-&gt;C7Br), Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -410007,7 +409297,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06346">
+            <rdf:Description rdf:about="#R_MAR06346">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/FAOXC9BRC7BRm"/>
@@ -410017,21 +409307,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01802m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03554m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01802m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03554m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01803m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03552m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01803m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03552m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR06347" sboTerm="SBO:0000176" id="MAR06347" name="Fatty Acid Beta Oxidation (C9-&gt;C7), Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06347" sboTerm="SBO:0000176" id="R_MAR06347" name="Fatty Acid Beta Oxidation (C9-&gt;C7), Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -410040,7 +409330,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06347">
+            <rdf:Description rdf:about="#R_MAR06347">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FAOXC9C7m"/>
@@ -410051,18 +409341,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01802m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02616m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01802m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02616m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01803m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02107m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01803m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02107m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:and>
@@ -410072,7 +409362,7 @@
           </fbc:and>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06349" sboTerm="SBO:0000176" id="MAR06349" name="Fatty Acid Omega Oxidation (W-Ohc16-&gt;C16Dc)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06349" sboTerm="SBO:0000176" id="R_MAR06349" name="Fatty Acid Omega Oxidation (W-Ohc16-&gt;C16Dc)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -410081,7 +409371,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06349">
+            <rdf:Description rdf:about="#R_MAR06349">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FAOXOHC16C16DCc"/>
@@ -410092,17 +409382,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00403c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM00403c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552c" stoichiometry="2" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM02553c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03654c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM02553c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03654c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR06350" sboTerm="SBO:0000176" id="MAR06350" name="Fatty Acid Omega Oxidation (W-Ohc22-&gt;C22Dc)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06350" sboTerm="SBO:0000176" id="R_MAR06350" name="Fatty Acid Omega Oxidation (W-Ohc22-&gt;C22Dc)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -410111,7 +409401,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06350">
+            <rdf:Description rdf:about="#R_MAR06350">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FAOXOHC22C22DCc"/>
@@ -410122,17 +409412,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03798c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03798c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02553c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03560c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02553c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03560c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR06376" sboTerm="SBO:0000176" id="MAR06376" name="Fatty Acid Omega Oxidation (W-Ohmc10-&gt;Dc10)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06376" sboTerm="SBO:0000176" id="R_MAR06376" name="Fatty Acid Omega Oxidation (W-Ohmc10-&gt;Dc10)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -410141,7 +409431,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06376">
+            <rdf:Description rdf:about="#R_MAR06376">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FAOXOHMC10DC10c"/>
@@ -410153,17 +409443,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03797c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03797c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM02553c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03923c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM02553c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03923c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR06378" sboTerm="SBO:0000176" id="MAR06378" name="Fatty Acid Beta Oxidation Trans (C10:1-&gt;C10:2), Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06378" sboTerm="SBO:0000176" id="R_MAR06378" name="Fatty Acid Beta Oxidation Trans (C10:1-&gt;C10:2), Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -410172,7 +409462,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06378">
+            <rdf:Description rdf:about="#R_MAR06378">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FAOXTC101TC102m"/>
@@ -410183,18 +409473,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01802m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03969m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01802m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03969m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01803m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03522m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01803m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03522m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Mcad"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06407" sboTerm="SBO:0000176" id="MAR06407" name="Fatty Acid Beta Oxidation Trans (C12:2-&gt;C10:1), Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06407" sboTerm="SBO:0000176" id="R_MAR06407" name="Fatty Acid Beta Oxidation Trans (C12:2-&gt;C10:1), Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -410203,7 +409493,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06407">
+            <rdf:Description rdf:about="#R_MAR06407">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FAOXTC122TC101m"/>
@@ -410214,16 +409504,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03966m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03966m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03969m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03969m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:and>
@@ -410232,7 +409522,7 @@
           </fbc:and>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06418" sboTerm="SBO:0000176" id="MAR06418" name="Isomerization Trans (C12:2), Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06418" sboTerm="SBO:0000176" id="R_MAR06418" name="Isomerization Trans (C12:2), Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -410241,7 +409531,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06418">
+            <rdf:Description rdf:about="#R_MAR06418">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FAOXTC122m"/>
@@ -410252,16 +409542,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03967m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03967m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03966m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03966m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG4598"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06437" sboTerm="SBO:0000176" id="MAR06437" name="Fatty Acid Beta Oxidation Trans (C14:2-&gt;C12:2), Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06437" sboTerm="SBO:0000176" id="R_MAR06437" name="Fatty Acid Beta Oxidation Trans (C14:2-&gt;C12:2), Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -410270,7 +409560,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06437">
+            <rdf:Description rdf:about="#R_MAR06437">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FAOXTC142TC122m"/>
@@ -410281,21 +409571,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01802m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM04041m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01802m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04041m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01803m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03967m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01803m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03967m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR06449" sboTerm="SBO:0000176" id="MAR06449" name="Fatty Acid Beta Oxidation Trans (C16:2-&gt;C14:2), Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06449" sboTerm="SBO:0000176" id="R_MAR06449" name="Fatty Acid Beta Oxidation Trans (C16:2-&gt;C14:2), Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -410304,7 +409594,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06449">
+            <rdf:Description rdf:about="#R_MAR06449">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FAOXTC162TC142m"/>
@@ -410315,21 +409605,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01802m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03982m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01802m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03982m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01803m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM04041m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01803m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04041m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR06452" sboTerm="SBO:0000176" id="MAR06452" name="Fatty Acid Beta Oxidation Trans (C18:2-&gt;C16:2), Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06452" sboTerm="SBO:0000176" id="R_MAR06452" name="Fatty Acid Beta Oxidation Trans (C18:2-&gt;C16:2), Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -410338,7 +409628,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06452">
+            <rdf:Description rdf:about="#R_MAR06452">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FAOXTC182TC162m"/>
@@ -410349,21 +409639,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00106m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01802m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00106m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01802m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01803m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03982m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01803m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03982m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR06483" sboTerm="SBO:0000176" id="MAR06483" name="Fatty Acid Beta Oxidation (C12:2-&gt;C10:1), Peroxisomal" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06483" sboTerm="SBO:0000176" id="R_MAR06483" name="Fatty Acid Beta Oxidation (C12:2-&gt;C10:1), Peroxisomal" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -410372,7 +409662,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06483">
+            <rdf:Description rdf:about="#R_MAR06483">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FOAXC122C101x"/>
@@ -410383,22 +409673,22 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02698x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02698x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00980x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01261x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00980x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Mfe2"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06485" sboTerm="SBO:0000185" id="MAR06485" name="Transport of Glutaryl Coenzyme A from Mitochondria into Cytosol" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06485" sboTerm="SBO:0000185" id="R_MAR06485" name="Transport of Glutaryl Coenzyme A from Mitochondria into Cytosol" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -410407,7 +409697,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06485">
+            <rdf:Description rdf:about="#R_MAR06485">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GLUTCOAACBP"/>
@@ -410418,16 +409708,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01977m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01977m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01977c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01977c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Acbp1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06487" sboTerm="SBO:0000185" id="MAR06487" name="Transport of (S)-3-Hydroxydecanoyl Coenzyme A from Mitochondria into the Cytosol" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06487" sboTerm="SBO:0000185" id="R_MAR06487" name="Transport of (S)-3-Hydroxydecanoyl Coenzyme A from Mitochondria into the Cytosol" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -410436,7 +409726,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06487">
+            <rdf:Description rdf:about="#R_MAR06487">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/HDCACBP"/>
@@ -410448,16 +409738,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00181m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00181m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00181c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00181c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Acbp1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06489" sboTerm="SBO:0000185" id="MAR06489" name="Transport of (S)-3-Hydroxydodecanoyl Coenzyme A from Mitochondria into the Cytosol" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06489" sboTerm="SBO:0000185" id="R_MAR06489" name="Transport of (S)-3-Hydroxydodecanoyl Coenzyme A from Mitochondria into the Cytosol" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -410466,7 +409756,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06489">
+            <rdf:Description rdf:about="#R_MAR06489">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/HDDACBP"/>
@@ -410478,16 +409768,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00174m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00174m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00174c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00174c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Acbp1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06491" sboTerm="SBO:0000185" id="MAR06491" name="Transport of 3-Hydroxyhexadecanoylcoa from Mitochondria into the Cytosol" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06491" sboTerm="SBO:0000185" id="R_MAR06491" name="Transport of 3-Hydroxyhexadecanoylcoa from Mitochondria into the Cytosol" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -410496,7 +409786,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06491">
+            <rdf:Description rdf:about="#R_MAR06491">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/HDECAACBP"/>
@@ -410508,16 +409798,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03218m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03218m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03218c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03218c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Acbp1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06493" sboTerm="SBO:0000185" id="MAR06493" name="Transport of 3-Hydroxyhexadecenoylcoa from Mitochondria into the Cytosol" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06493" sboTerm="SBO:0000185" id="R_MAR06493" name="Transport of 3-Hydroxyhexadecenoylcoa from Mitochondria into the Cytosol" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -410526,7 +409816,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06493">
+            <rdf:Description rdf:about="#R_MAR06493">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/HDECEACBP"/>
@@ -410537,69 +409827,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03216m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03216m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03216c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03216c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Acbp1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06494" sboTerm="SBO:0000185" id="MAR06494" name="Transport of 3-Hydroxyhexadecenoyl Carnitine into Extra Cellular Space" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
-        <notes>
-          <body xmlns="http://www.w3.org/1999/xhtml">
-            <p>Confidence Level: 0</p>
-            <p>AUTHORS: PMID:19720082</p>
-          </body>
-        </notes>
-        <annotation>
-          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06494">
-              <bqbiol:is>
-                <rdf:Bag>
-                  <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/HEDCECRNe"/>
-                  <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HEDCECRNe"/>
-                </rdf:Bag>
-              </bqbiol:is>
-            </rdf:Description>
-          </rdf:RDF>
-        </annotation>
-        <listOfReactants>
-          <speciesReference species="MAM03217c" stoichiometry="1" constant="true"/>
-        </listOfReactants>
-        <listOfProducts>
-          <speciesReference species="MAM03217e" stoichiometry="1" constant="true"/>
-        </listOfProducts>
-      </reaction>
-      <reaction metaid="MAR06497" sboTerm="SBO:0000185" id="MAR06497" name="Transport of 3-Hydroxyhexadecanoyl Carnitine into Extra Cellular Space" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
-        <notes>
-          <body xmlns="http://www.w3.org/1999/xhtml">
-            <p>Confidence Level: 0</p>
-            <p>AUTHORS: PMID:19720082</p>
-          </body>
-        </notes>
-        <annotation>
-          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06497">
-              <bqbiol:is>
-                <rdf:Bag>
-                  <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/HEXDCRNe"/>
-                  <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR100618"/>
-                  <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HEXDCRNe"/>
-                </rdf:Bag>
-              </bqbiol:is>
-            </rdf:Description>
-          </rdf:RDF>
-        </annotation>
-        <listOfReactants>
-          <speciesReference species="MAM03219c" stoichiometry="1" constant="true"/>
-        </listOfReactants>
-        <listOfProducts>
-          <speciesReference species="MAM03219e" stoichiometry="1" constant="true"/>
-        </listOfProducts>
-      </reaction>
-      <reaction metaid="MAR06498" sboTerm="SBO:0000185" id="MAR06498" name="Transport of Hexadecanedioc Acid by Diffusion" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06498" sboTerm="SBO:0000185" id="R_MAR06498" name="Transport of Hexadecanedioc Acid by Diffusion" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -410608,7 +409845,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06498">
+            <rdf:Description rdf:about="#R_MAR06498">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/HEXDIACtr"/>
@@ -410619,13 +409856,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03654c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03654c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03654r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03654r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR06499" sboTerm="SBO:0000185" id="MAR06499" name="Transport of Hexadecanedioyl Coa" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06499" sboTerm="SBO:0000185" id="R_MAR06499" name="Transport of Hexadecanedioyl Coa" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -410634,7 +409871,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06499">
+            <rdf:Description rdf:about="#R_MAR06499">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/HEXDICOAACBP"/>
@@ -410645,45 +409882,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03655r" stoichiometry="1" constant="true"/>
-        </listOfReactants>
-        <listOfProducts>
-          <speciesReference species="MAM03655c" stoichiometry="1" constant="true"/>
-        </listOfProducts>
-        <fbc:geneProductAssociation>
-          <fbc:geneProductRef fbc:geneProduct="Acbp1"/>
-        </fbc:geneProductAssociation>
-      </reaction>
-      <reaction metaid="MAR06502" sboTerm="SBO:0000185" id="MAR06502" name="Transport of Hexadecanedioyl Coa" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
-        <notes>
-          <body xmlns="http://www.w3.org/1999/xhtml">
-            <p>Confidence Level: 0</p>
-            <p>AUTHORS: PMID:20511713;PMID:11859412;PMID:16908521;PMID:8001684</p>
-          </body>
-        </notes>
-        <annotation>
-          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06502">
-              <bqbiol:is>
-                <rdf:Bag>
-                  <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/HEXDICOAACBPx"/>
-                  <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HEXDICOAACBPx"/>
-                </rdf:Bag>
-              </bqbiol:is>
-            </rdf:Description>
-          </rdf:RDF>
-        </annotation>
-        <listOfReactants>
-          <speciesReference species="MAM03655r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03655r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03655x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03655c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Acbp1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06503" sboTerm="SBO:0000185" id="MAR06503" name="Transport of 3-Hydroxyisovalerylcoa from Mitochondria into the Cytosol" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06502" sboTerm="SBO:0000185" id="R_MAR06502" name="Transport of Hexadecanedioyl Coa" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -410692,53 +409900,56 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06503">
+            <rdf:Description rdf:about="#R_MAR06502">
               <bqbiol:is>
                 <rdf:Bag>
-                  <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/HIVCACBP"/>
-                  <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HIVCACBP"/>
+                  <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/HEXDICOAACBPx"/>
+                  <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HEXDICOAACBPx"/>
                 </rdf:Bag>
               </bqbiol:is>
             </rdf:Description>
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03242m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03655r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03242c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03655x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Acbp1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06504" sboTerm="SBO:0000185" id="MAR06504" name="Transport of 3-Hydroxy-Isovaleryl Carnitine into Extra Cellular Space" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06503" sboTerm="SBO:0000185" id="R_MAR06503" name="Transport of 3-Hydroxyisovalerylcoa from Mitochondria into the Cytosol" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
-            <p>AUTHORS: PMID:19720082</p>
+            <p>AUTHORS: PMID:20511713;PMID:11859412;PMID:16908521;PMID:8001684</p>
           </body>
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06504">
+            <rdf:Description rdf:about="#R_MAR06503">
               <bqbiol:is>
                 <rdf:Bag>
-                  <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/HIVCRNe"/>
-                  <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HIVCRNe"/>
+                  <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/HIVCACBP"/>
+                  <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HIVCACBP"/>
                 </rdf:Bag>
               </bqbiol:is>
             </rdf:Description>
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03243c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03242m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03243e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03242c" stoichiometry="1" constant="true"/>
         </listOfProducts>
+        <fbc:geneProductAssociation>
+          <fbc:geneProductRef fbc:geneProduct="Acbp1"/>
+        </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06528" sboTerm="SBO:0000185" id="MAR06528" name="Transport of (S)-3-Hydroxyoctadecanoyl Coenzyme A from Mitochondria into the Cytosol" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06528" sboTerm="SBO:0000185" id="R_MAR06528" name="Transport of (S)-3-Hydroxyoctadecanoyl Coenzyme A from Mitochondria into the Cytosol" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -410747,7 +409958,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06528">
+            <rdf:Description rdf:about="#R_MAR06528">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/HOCDACBP"/>
@@ -410758,16 +409969,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03230m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03230m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03230c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03230c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Acbp1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06538" sboTerm="SBO:0000185" id="MAR06538" name="Transport of 3-Hydroxyoctadecenoylcoa from Mitochondria into the Cytosol" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06538" sboTerm="SBO:0000185" id="R_MAR06538" name="Transport of 3-Hydroxyoctadecenoylcoa from Mitochondria into the Cytosol" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -410776,7 +409987,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06538">
+            <rdf:Description rdf:about="#R_MAR06538">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/HOCTDACBP"/>
@@ -410787,68 +409998,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03252m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03252m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03252c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03252c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Acbp1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06541" sboTerm="SBO:0000185" id="MAR06541" name="Transport of 3-Hydroxyoctadecadienoyl Carnitine into Extra Cellular Space" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
-        <notes>
-          <body xmlns="http://www.w3.org/1999/xhtml">
-            <p>Confidence Level: 0</p>
-            <p>NOTES: DOI:10.1007/s00706-005-0332-9;http://www.childrensmn.org/Manuals/Lab/Chemistry/051465.pdf</p>
-          </body>
-        </notes>
-        <annotation>
-          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06541">
-              <bqbiol:is>
-                <rdf:Bag>
-                  <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/HOCTDEC2CRNe"/>
-                  <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HOCTDEC2CRNe"/>
-                </rdf:Bag>
-              </bqbiol:is>
-            </rdf:Description>
-          </rdf:RDF>
-        </annotation>
-        <listOfReactants>
-          <speciesReference species="MAM03250c" stoichiometry="1" constant="true"/>
-        </listOfReactants>
-        <listOfProducts>
-          <speciesReference species="MAM03250e" stoichiometry="1" constant="true"/>
-        </listOfProducts>
-      </reaction>
-      <reaction metaid="MAR06582" sboTerm="SBO:0000185" id="MAR06582" name="Transport of 3-Hydroxyoctadecanoyl Carnitine into Extra Cellular Space" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
-        <notes>
-          <body xmlns="http://www.w3.org/1999/xhtml">
-            <p>Confidence Level: 0</p>
-            <p>AUTHORS: PMID:19720082</p>
-          </body>
-        </notes>
-        <annotation>
-          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06582">
-              <bqbiol:is>
-                <rdf:Bag>
-                  <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/HOCTDECCRNe"/>
-                  <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HOCTDECCRNe"/>
-                </rdf:Bag>
-              </bqbiol:is>
-            </rdf:Description>
-          </rdf:RDF>
-        </annotation>
-        <listOfReactants>
-          <speciesReference species="MAM03251c" stoichiometry="1" constant="true"/>
-        </listOfReactants>
-        <listOfProducts>
-          <speciesReference species="MAM03251e" stoichiometry="1" constant="true"/>
-        </listOfProducts>
-      </reaction>
-      <reaction metaid="MAR06586" sboTerm="SBO:0000185" id="MAR06586" name="Transport of (S)-3-Hydroxytetradecanoyl Coenzyme A from Mitochondria into the Cytosol" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06586" sboTerm="SBO:0000185" id="R_MAR06586" name="Transport of (S)-3-Hydroxytetradecanoyl Coenzyme A from Mitochondria into the Cytosol" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -410857,7 +410016,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06586">
+            <rdf:Description rdf:about="#R_MAR06586">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/HTDCACBP"/>
@@ -410869,43 +410028,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00178m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00178m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00178c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00178c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Acbp1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06590" sboTerm="SBO:0000185" id="MAR06590" name="Transport of 3-Hydroxy-Tetradecanoyl Carnitine into Extra Cellular Space" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
-        <notes>
-          <body xmlns="http://www.w3.org/1999/xhtml">
-            <p>Confidence Level: 0</p>
-            <p>AUTHORS: PMID:20583174</p>
-          </body>
-        </notes>
-        <annotation>
-          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06590">
-              <bqbiol:is>
-                <rdf:Bag>
-                  <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/HTDCRNe"/>
-                  <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR100744"/>
-                  <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HTDCRNe"/>
-                </rdf:Bag>
-              </bqbiol:is>
-            </rdf:Description>
-          </rdf:RDF>
-        </annotation>
-        <listOfReactants>
-          <speciesReference species="MAM03262c" stoichiometry="1" constant="true"/>
-        </listOfReactants>
-        <listOfProducts>
-          <speciesReference species="MAM03262e" stoichiometry="1" constant="true"/>
-        </listOfProducts>
-      </reaction>
-      <reaction metaid="MAR06593" sboTerm="SBO:0000185" id="MAR06593" name="Transport of Isovaleryl Coenzyme A from Mitochondria into Cytosol" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06593" sboTerm="SBO:0000185" id="R_MAR06593" name="Transport of Isovaleryl Coenzyme A from Mitochondria into Cytosol" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -410914,7 +410046,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06593">
+            <rdf:Description rdf:about="#R_MAR06593">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/IVCOAACBP"/>
@@ -410926,43 +410058,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02189m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02189m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02189c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02189c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Acbp1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06594" sboTerm="SBO:0000185" id="MAR06594" name="Transport of Isovaleryl Carnitine into the Extra Cellular Space" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
-        <notes>
-          <body xmlns="http://www.w3.org/1999/xhtml">
-            <p>Confidence Level: 0</p>
-            <p>AUTHORS: PMID:19720082</p>
-          </body>
-        </notes>
-        <annotation>
-          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06594">
-              <bqbiol:is>
-                <rdf:Bag>
-                  <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/IVCRNe"/>
-                  <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR100895"/>
-                  <rdf:li rdf:resource="https://identifiers.org/vmhreaction/IVCRNe"/>
-                </rdf:Bag>
-              </bqbiol:is>
-            </rdf:Description>
-          </rdf:RDF>
-        </annotation>
-        <listOfReactants>
-          <speciesReference species="MAM03706c" stoichiometry="1" constant="true"/>
-        </listOfReactants>
-        <listOfProducts>
-          <speciesReference species="MAM03706e" stoichiometry="1" constant="true"/>
-        </listOfProducts>
-      </reaction>
-      <reaction metaid="MAR06596" sboTerm="SBO:0000185" id="MAR06596" name="Transport of Lignocericyl Coenzyme A from Cytosol to Peroxisome." reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06596" sboTerm="SBO:0000185" id="R_MAR06596" name="Transport of Lignocericyl Coenzyme A from Cytosol to Peroxisome." reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -410971,7 +410076,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06596">
+            <rdf:Description rdf:about="#R_MAR06596">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/LGNCCOAtcx"/>
@@ -410983,21 +410088,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02971c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02971c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02971x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02971x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Abcd1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06597" sboTerm="SBO:0000185" id="MAR06597" name="Transport of Nervonylcoa into Peroxisomes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06597" sboTerm="SBO:0000185" id="R_MAR06597" name="Transport of Nervonylcoa into Peroxisomes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -411006,7 +410111,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06597">
+            <rdf:Description rdf:about="#R_MAR06597">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/NRVNCCOAtxc"/>
@@ -411018,21 +410123,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00025c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00025c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00025x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00025x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Abcd1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06598" sboTerm="SBO:0000176" id="MAR06598" name="Transport of 11-Octadecenoyl Carnitine into the Mitochondrial Matrix" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06598" sboTerm="SBO:0000176" id="R_MAR06598" name="Transport of 11-Octadecenoyl Carnitine into the Mitochondrial Matrix" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -411041,7 +410146,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06598">
+            <rdf:Description rdf:about="#R_MAR06598">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/OCD11COACPT1"/>
@@ -411053,18 +410158,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03791c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03791c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03790c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03790c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="whd"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06599" sboTerm="SBO:0000185" id="MAR06599" name="Transport of 11-Octadecenoyl Carnitine into the Mitochondrial Matrix" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06599" sboTerm="SBO:0000185" id="R_MAR06599" name="Transport of 11-Octadecenoyl Carnitine into the Mitochondrial Matrix" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -411073,7 +410178,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06599">
+            <rdf:Description rdf:about="#R_MAR06599">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/OCD11CRNCACT"/>
@@ -411085,16 +410190,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03790c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03790c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03790m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03790m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="colt"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06600" sboTerm="SBO:0000176" id="MAR06600" name="Transport of 11-Octadecenoyl Carnitine into the Mitochondrial Matrix" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06600" sboTerm="SBO:0000176" id="R_MAR06600" name="Transport of 11-Octadecenoyl Carnitine into the Mitochondrial Matrix" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -411103,7 +410208,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06600">
+            <rdf:Description rdf:about="#R_MAR06600">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/OCD11CRNCPT2"/>
@@ -411115,18 +410220,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03790m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03790m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02348m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03791m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03791m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CPT2"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06604" sboTerm="SBO:0000176" id="MAR06604" name="Uptake of Vaccenic Acid" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06604" sboTerm="SBO:0000176" id="R_MAR06604" name="Uptake of Vaccenic Acid" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -411135,7 +410240,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06604">
+            <rdf:Description rdf:about="#R_MAR06604">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/OCT11EFATP"/>
@@ -411147,14 +410252,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01585e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01585e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01334c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03791c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03791c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -411163,7 +410268,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06688" sboTerm="SBO:0000185" id="MAR06688" name="Transport of 3-Hydroxyoctadecadienoyl Coenzyme A from Mitochondria into Cytosol" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06688" sboTerm="SBO:0000185" id="R_MAR06688" name="Transport of 3-Hydroxyoctadecadienoyl Coenzyme A from Mitochondria into Cytosol" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -411172,7 +410277,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06688">
+            <rdf:Description rdf:about="#R_MAR06688">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/OCTDEC2ACBP"/>
@@ -411183,16 +410288,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03249m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03249m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03249c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03249c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Acbp1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06689" sboTerm="SBO:0000185" id="MAR06689" name="Transport of Octadecenoyl Coenzyme A into Mitochondrial Matrix" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06689" sboTerm="SBO:0000185" id="R_MAR06689" name="Transport of Octadecenoyl Coenzyme A into Mitochondrial Matrix" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -411201,7 +410306,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06689">
+            <rdf:Description rdf:about="#R_MAR06689">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/OCTDECCACT"/>
@@ -411212,16 +410317,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03793c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03793c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03793m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03793m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="colt"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06696" sboTerm="SBO:0000176" id="MAR06696" name="Transport of Octadecenoyl Coenzyme A into Mitochondrial Matrix" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06696" sboTerm="SBO:0000176" id="R_MAR06696" name="Transport of Octadecenoyl Coenzyme A into Mitochondrial Matrix" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -411230,7 +410335,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06696">
+            <rdf:Description rdf:about="#R_MAR06696">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/OCTDECCPT1"/>
@@ -411241,18 +410346,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03792c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03792c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03793c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03793c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="whd"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06698" sboTerm="SBO:0000176" id="MAR06698" name="Transport of Octadecenoyl Coenzyme A into Mitochondrial Matrix" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06698" sboTerm="SBO:0000176" id="R_MAR06698" name="Transport of Octadecenoyl Coenzyme A into Mitochondrial Matrix" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -411261,7 +410366,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06698">
+            <rdf:Description rdf:about="#R_MAR06698">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/OCTDECCPT2"/>
@@ -411272,44 +410377,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03793m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03793m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02348m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03792m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03792m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CPT2"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06706" sboTerm="SBO:0000185" id="MAR06706" name="Transport of 3-Hydroxy-Octadecenoyl Carnitine into Extra Cellular Space" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
-        <notes>
-          <body xmlns="http://www.w3.org/1999/xhtml">
-            <p>Confidence Level: 0</p>
-            <p>AUTHORS: PMID:19720082</p>
-          </body>
-        </notes>
-        <annotation>
-          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06706">
-              <bqbiol:is>
-                <rdf:Bag>
-                  <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/OCTDECE1CRNe"/>
-                  <rdf:li rdf:resource="https://identifiers.org/vmhreaction/OCTDECE1CRNe"/>
-                </rdf:Bag>
-              </bqbiol:is>
-            </rdf:Description>
-          </rdf:RDF>
-        </annotation>
-        <listOfReactants>
-          <speciesReference species="MAM03253c" stoichiometry="1" constant="true"/>
-        </listOfReactants>
-        <listOfProducts>
-          <speciesReference species="MAM03253e" stoichiometry="1" constant="true"/>
-        </listOfProducts>
-      </reaction>
-      <reaction metaid="MAR06724" sboTerm="SBO:0000185" id="MAR06724" name="Transport of W-Hydroxydecanoic Acid by Diffusion" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06724" sboTerm="SBO:0000185" id="R_MAR06724" name="Transport of W-Hydroxydecanoic Acid by Diffusion" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -411318,7 +410397,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06724">
+            <rdf:Description rdf:about="#R_MAR06724">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/OMHDEACIDTD"/>
@@ -411330,13 +410409,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03797r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03797r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03797c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03797c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR06769" sboTerm="SBO:0000185" id="MAR06769" name="Transport of W-Hydroxydocosanoic Acid by Diffusion" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06769" sboTerm="SBO:0000185" id="R_MAR06769" name="Transport of W-Hydroxydocosanoic Acid by Diffusion" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -411345,7 +410424,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06769">
+            <rdf:Description rdf:about="#R_MAR06769">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/OMHDOCOSACTD"/>
@@ -411356,13 +410435,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03798r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03798r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03798c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03798c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR06773" sboTerm="SBO:0000185" id="MAR06773" name="Transport of W-Hydroxypalmitic Acid by Diffusion" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06773" sboTerm="SBO:0000185" id="R_MAR06773" name="Transport of W-Hydroxypalmitic Acid by Diffusion" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -411371,7 +410450,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06773">
+            <rdf:Description rdf:about="#R_MAR06773">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/OMHPALTD"/>
@@ -411382,13 +410461,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00403r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00403r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00403c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00403c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR06775" sboTerm="SBO:0000185" id="MAR06775" name="Transport of Pristanoylcoa from Cytosol to Peroxisomes." reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06775" sboTerm="SBO:0000185" id="R_MAR06775" name="Transport of Pristanoylcoa from Cytosol to Peroxisomes." reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -411397,7 +410476,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06775">
+            <rdf:Description rdf:about="#R_MAR06775">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PRISTCOAtcx"/>
@@ -411409,21 +410488,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03887c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03887c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03887x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03887x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Abcd3"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06779" sboTerm="SBO:0000185" id="MAR06779" name="Transport of Phytanoylcoa from Cytosol to Peroxisomes." reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06779" sboTerm="SBO:0000185" id="R_MAR06779" name="Transport of Phytanoylcoa from Cytosol to Peroxisomes." reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -411432,7 +410511,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06779">
+            <rdf:Description rdf:about="#R_MAR06779">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/SCP21cx"/>
@@ -411444,21 +410523,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02747c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02747c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02747x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02747x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Abcd3"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06804" sboTerm="SBO:0000176" id="MAR06804" name="Activation of Sebacic Acidd" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06804" sboTerm="SBO:0000176" id="R_MAR06804" name="Activation of Sebacic Acidd" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -411467,7 +410546,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06804">
+            <rdf:Description rdf:about="#R_MAR06804">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/SEBACACT"/>
@@ -411479,17 +410558,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03923c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03923c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01334c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03924c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03924c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR06805" sboTerm="SBO:0000185" id="MAR06805" name="Transport of Sebacic Acid into Cytosol (Diffusion)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06805" sboTerm="SBO:0000185" id="R_MAR06805" name="Transport of Sebacic Acid into Cytosol (Diffusion)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -411498,7 +410577,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06805">
+            <rdf:Description rdf:about="#R_MAR06805">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/SEBACIDTD"/>
@@ -411510,13 +410589,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03923x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03923x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03923c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03923c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR06809" sboTerm="SBO:0000176" id="MAR06809" name="Production of Sebacoyl Carnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06809" sboTerm="SBO:0000176" id="R_MAR06809" name="Production of Sebacoyl Carnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -411525,7 +410604,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06809">
+            <rdf:Description rdf:about="#R_MAR06809">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/SEBCOACROT"/>
@@ -411537,18 +410616,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02348x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03924x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03924x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01597x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03489x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03489x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CROT"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06812" sboTerm="SBO:0000185" id="MAR06812" name="Transport of Stearoyl Coenzyme A from Cytosol to Peroxisomes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06812" sboTerm="SBO:0000185" id="R_MAR06812" name="Transport of Stearoyl Coenzyme A from Cytosol to Peroxisomes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -411557,7 +410636,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06812">
+            <rdf:Description rdf:about="#R_MAR06812">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/STCOATxc"/>
@@ -411569,21 +410648,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02941c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02941c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02941x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02941x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Abcd1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06816" sboTerm="SBO:0000185" id="MAR06816" name="Transport of Stearidonylcoa into Peroxisomes." reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06816" sboTerm="SBO:0000185" id="R_MAR06816" name="Transport of Stearidonylcoa into Peroxisomes." reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -411592,7 +410671,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06816">
+            <rdf:Description rdf:about="#R_MAR06816">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/STRDNCCOAtxc"/>
@@ -411604,21 +410683,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00108c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00108c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00108x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00108x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Abcd1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06821" sboTerm="SBO:0000185" id="MAR06821" name="Transport of Suberic Acid into Cytosol (Diffusion)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06821" sboTerm="SBO:0000185" id="R_MAR06821" name="Transport of Suberic Acid into Cytosol (Diffusion)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -411627,7 +410706,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06821">
+            <rdf:Description rdf:about="#R_MAR06821">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/SUBEACTD"/>
@@ -411639,13 +410718,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03954x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03954x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03954c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03954c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR06825" sboTerm="SBO:0000185" id="MAR06825" name="Transport of Suberyl Carnitine into Cytosol" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06825" sboTerm="SBO:0000185" id="R_MAR06825" name="Transport of Suberyl Carnitine into Cytosol" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -411654,7 +410733,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06825">
+            <rdf:Description rdf:about="#R_MAR06825">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/SUBERCACT"/>
@@ -411666,16 +410745,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03502x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03502x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03502c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03502c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="colt"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06832" sboTerm="SBO:0000176" id="MAR06832" name="Production of Suberyl Carnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06832" sboTerm="SBO:0000176" id="R_MAR06832" name="Production of Suberyl Carnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -411684,7 +410763,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06832">
+            <rdf:Description rdf:about="#R_MAR06832">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/SUBERCROT"/>
@@ -411696,18 +410775,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02348x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03922x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03922x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01597x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03502x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03502x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CROT"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06833" sboTerm="SBO:0000176" id="MAR06833" name="Activation of Suberic Acid for Formation of Suberyl Carnitine" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06833" sboTerm="SBO:0000176" id="R_MAR06833" name="Activation of Suberic Acid for Formation of Suberyl Carnitine" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -411716,7 +410795,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06833">
+            <rdf:Description rdf:about="#R_MAR06833">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/SUBERICACT"/>
@@ -411728,17 +410807,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03954c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03954c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01334c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03922c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03922c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR06846" sboTerm="SBO:0000176" id="MAR06846" name="Activation of Succinate" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06846" sboTerm="SBO:0000176" id="R_MAR06846" name="Activation of Succinate" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -411747,7 +410826,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06846">
+            <rdf:Description rdf:about="#R_MAR06846">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/SUCCACT"/>
@@ -411758,17 +410837,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02943c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02943c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01334c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02944c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02944c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR06847" sboTerm="SBO:0000176" id="MAR06847" name="Production of Succinyl Carnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06847" sboTerm="SBO:0000176" id="R_MAR06847" name="Production of Succinyl Carnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -411777,7 +410856,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06847">
+            <rdf:Description rdf:about="#R_MAR06847">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/SUCCCROT"/>
@@ -411789,124 +410868,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02348x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02944x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02944x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01597x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03495x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03495x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CROT"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06853" sboTerm="SBO:0000185" id="MAR06853" name="Transport of Myristoyl Carnitine into Extra Cellular Space" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
-        <notes>
-          <body xmlns="http://www.w3.org/1999/xhtml">
-            <p>Confidence Level: 0</p>
-            <p>AUTHORS: PMID:19720082</p>
-          </body>
-        </notes>
-        <annotation>
-          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06853">
-              <bqbiol:is>
-                <rdf:Bag>
-                  <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/TDCRNe"/>
-                  <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR104751"/>
-                  <rdf:li rdf:resource="https://identifiers.org/vmhreaction/TDCRNe"/>
-                </rdf:Bag>
-              </bqbiol:is>
-            </rdf:Description>
-          </rdf:RDF>
-        </annotation>
-        <listOfReactants>
-          <speciesReference species="MAM02974c" stoichiometry="1" constant="true"/>
-        </listOfReactants>
-        <listOfProducts>
-          <speciesReference species="MAM02974e" stoichiometry="1" constant="true"/>
-        </listOfProducts>
-      </reaction>
-      <reaction metaid="MAR06856" sboTerm="SBO:0000185" id="MAR06856" name="Transport of Tetradecadienoyl Carnitine into Extra Cellular Space" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
-        <notes>
-          <body xmlns="http://www.w3.org/1999/xhtml">
-            <p>Confidence Level: 0</p>
-            <p>AUTHORS: PMID:19720082</p>
-          </body>
-        </notes>
-        <annotation>
-          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06856">
-              <bqbiol:is>
-                <rdf:Bag>
-                  <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/TETDEC2CRNe"/>
-                  <rdf:li rdf:resource="https://identifiers.org/vmhreaction/TETDEC2CRNe"/>
-                </rdf:Bag>
-              </bqbiol:is>
-            </rdf:Description>
-          </rdf:RDF>
-        </annotation>
-        <listOfReactants>
-          <speciesReference species="MAM03975c" stoichiometry="1" constant="true"/>
-        </listOfReactants>
-        <listOfProducts>
-          <speciesReference species="MAM03975e" stoichiometry="1" constant="true"/>
-        </listOfProducts>
-      </reaction>
-      <reaction metaid="MAR06857" sboTerm="SBO:0000185" id="MAR06857" name="Transport of Tetradecenoyl Carnitine into Extra Cellular Space" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
-        <notes>
-          <body xmlns="http://www.w3.org/1999/xhtml">
-            <p>Confidence Level: 0</p>
-            <p>AUTHORS: PMID:19720082</p>
-          </body>
-        </notes>
-        <annotation>
-          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06857">
-              <bqbiol:is>
-                <rdf:Bag>
-                  <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/TETDECE1CRNe"/>
-                  <rdf:li rdf:resource="https://identifiers.org/vmhreaction/TETDECE1CRNe"/>
-                </rdf:Bag>
-              </bqbiol:is>
-            </rdf:Description>
-          </rdf:RDF>
-        </annotation>
-        <listOfReactants>
-          <speciesReference species="MAM03980c" stoichiometry="1" constant="true"/>
-        </listOfReactants>
-        <listOfProducts>
-          <speciesReference species="MAM03980e" stoichiometry="1" constant="true"/>
-        </listOfProducts>
-      </reaction>
-      <reaction metaid="MAR06858" sboTerm="SBO:0000185" id="MAR06858" name="Transport of Tiglyl Carnitine into the Extra Cellular Fluid" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
-        <notes>
-          <body xmlns="http://www.w3.org/1999/xhtml">
-            <p>Confidence Level: 0</p>
-            <p>AUTHORS: PMID:20157782</p>
-          </body>
-        </notes>
-        <annotation>
-          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06858">
-              <bqbiol:is>
-                <rdf:Bag>
-                  <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/TIGCRNe"/>
-                  <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR104864"/>
-                  <rdf:li rdf:resource="https://identifiers.org/vmhreaction/TIGCRNe"/>
-                </rdf:Bag>
-              </bqbiol:is>
-            </rdf:Description>
-          </rdf:RDF>
-        </annotation>
-        <listOfReactants>
-          <speciesReference species="MAM03496c" stoichiometry="1" constant="true"/>
-        </listOfReactants>
-        <listOfProducts>
-          <speciesReference species="MAM03496e" stoichiometry="1" constant="true"/>
-        </listOfProducts>
-      </reaction>
-      <reaction metaid="MAR06859" sboTerm="SBO:0000185" id="MAR06859" name="Transport of 3, 4-Dihydroxy-L-Phenylalanine by Lat1 in Association with 4F2Hc, Across the Apical Surface of the Membranes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06859" sboTerm="SBO:0000185" id="R_MAR06859" name="Transport of 3, 4-Dihydroxy-L-Phenylalanine by Lat1 in Association with 4F2Hc, Across the Apical Surface of the Membranes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -411916,7 +410889,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06859">
+            <rdf:Description rdf:about="#R_MAR06859">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/34DHPHELAT1tc"/>
@@ -411928,15 +410901,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02354e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02360c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02354e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02360c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02354c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02360e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02354c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02360e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR06860" sboTerm="SBO:0000185" id="MAR06860" name="Transport of L-Oh-Proline by the Apical Imino Amino Acid Transporters in Kidney And Intestine" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06860" sboTerm="SBO:0000185" id="R_MAR06860" name="Transport of L-Oh-Proline by the Apical Imino Amino Acid Transporters in Kidney And Intestine" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -411945,7 +410918,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06860">
+            <rdf:Description rdf:about="#R_MAR06860">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/4OHPROIMINOtc"/>
@@ -411957,20 +410930,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01442e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03037e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01442e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03037e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01442c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03037c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01442c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03037c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG43066"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06862" sboTerm="SBO:0000185" id="MAR06862" name="Transport of Alanylalanine by the Apical Pept1 Amino Acid Transporters" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06862" sboTerm="SBO:0000185" id="R_MAR06862" name="Transport of Alanylalanine by the Apical Pept1 Amino Acid Transporters" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -411979,7 +410952,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06862">
+            <rdf:Description rdf:about="#R_MAR06862">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ALAALAPEPT1tc"/>
@@ -411991,18 +410964,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03164e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03164e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03164c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03164c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG2930"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06863" sboTerm="SBO:0000185" id="MAR06863" name="Transport of Alanine by Y+Lat1 Or Y+Lat2 with Symporter of H" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06863" sboTerm="SBO:0000185" id="R_MAR06863" name="Transport of Alanine by Y+Lat1 Or Y+Lat2 with Symporter of H" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -412011,7 +410984,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06863">
+            <rdf:Description rdf:about="#R_MAR06863">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ALAyLATthc"/>
@@ -412023,14 +410996,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01307e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01365c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01307e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01365c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01307c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01365e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01307c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01365e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:and>
@@ -412042,7 +411015,7 @@
           </fbc:and>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06864" sboTerm="SBO:0000185" id="MAR06864" name="Transport of L-Ascorbate by Svct1 Or Svct2 Transporter" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06864" sboTerm="SBO:0000185" id="R_MAR06864" name="Transport of L-Ascorbate by Svct1 Or Svct2 Transporter" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -412052,7 +411025,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06864">
+            <rdf:Description rdf:about="#R_MAR06864">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ASCBSVCTtc"/>
@@ -412064,23 +411037,23 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01368e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01368e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="2" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01368c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01368c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG6293"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06865" sboTerm="SBO:0000185" id="MAR06865" name="Transport of L-Asparagine by Atb0 Transporter" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06865" sboTerm="SBO:0000185" id="R_MAR06865" name="Transport of L-Asparagine by Atb0 Transporter" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -412089,7 +411062,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06865">
+            <rdf:Description rdf:about="#R_MAR06865">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ASNATB0tc"/>
@@ -412101,20 +411074,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01369e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01442e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01369e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01442e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="2" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01369c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01442c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01369c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01442c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="2" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="GlyT"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06866" sboTerm="SBO:0000185" id="MAR06866" name="Transport of Beta Alanine by Pat1 in Renal And Intestinal Cells" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06866" sboTerm="SBO:0000185" id="R_MAR06866" name="Transport of Beta Alanine by Pat1 in Renal And Intestinal Cells" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -412123,7 +411096,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06866">
+            <rdf:Description rdf:about="#R_MAR06866">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/BALAt2r"/>
@@ -412137,18 +411110,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01383e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01383e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01383c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01383c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG13384"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06867" sboTerm="SBO:0000176" id="MAR06867" name="Binding of Betaglucans with Glycocholate" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06867" sboTerm="SBO:0000176" id="R_MAR06867" name="Binding of Betaglucans with Glycocholate" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -412157,7 +411130,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06867">
+            <rdf:Description rdf:about="#R_MAR06867">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/BGLUGCHe"/>
@@ -412169,14 +411142,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01988e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03483e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01988e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03483e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03595e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03595e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR06868" sboTerm="SBO:0000176" id="MAR06868" name="Binding of Betaglucans with Taurocholate" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06868" sboTerm="SBO:0000176" id="R_MAR06868" name="Binding of Betaglucans with Taurocholate" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -412185,7 +411158,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06868">
+            <rdf:Description rdf:about="#R_MAR06868">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/BGLUTCHLe"/>
@@ -412197,14 +411170,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02963e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03483e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02963e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03483e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03604e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03604e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR06869" sboTerm="SBO:0000176" id="MAR06869" name="Binding of Betaglucans with Taurodeoxycholate" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06869" sboTerm="SBO:0000176" id="R_MAR06869" name="Binding of Betaglucans with Taurodeoxycholate" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -412213,7 +411186,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06869">
+            <rdf:Description rdf:about="#R_MAR06869">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/BGLUTDECHOe"/>
@@ -412225,14 +411198,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03483e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02964e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03483e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02964e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03605e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03605e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR06870" sboTerm="SBO:0000185" id="MAR06870" name="Release of Biotin Across the Basolatral Membrane" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06870" sboTerm="SBO:0000185" id="R_MAR06870" name="Release of Biotin Across the Basolatral Membrane" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -412242,7 +411215,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06870">
+            <rdf:Description rdf:about="#R_MAR06870">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/BTNTe"/>
@@ -412256,13 +411229,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01401c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01401c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01401e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01401e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR06871" sboTerm="SBO:0000185" id="MAR06871" name="Transport of L-Carnosine by the Apical Pept1 Amino Acid Transporters" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06871" sboTerm="SBO:0000185" id="R_MAR06871" name="Transport of L-Carnosine by the Apical Pept1 Amino Acid Transporters" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -412271,7 +411244,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06871">
+            <rdf:Description rdf:about="#R_MAR06871">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CARPEPT1tc"/>
@@ -412285,18 +411258,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01423e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01423e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01423c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01423c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG2930"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06873" sboTerm="SBO:0000185" id="MAR06873" name="Release of B12 by SIMPle Diffusion" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06873" sboTerm="SBO:0000185" id="R_MAR06873" name="Release of B12 by SIMPle Diffusion" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -412305,7 +411278,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06873">
+            <rdf:Description rdf:about="#R_MAR06873">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CBLTDe"/>
@@ -412317,13 +411290,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01600c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01600c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01600e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01600e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR06884" sboTerm="SBO:0000185" id="MAR06884" name="Transport of Adenosylcobalamin into the Intestine" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06884" sboTerm="SBO:0000185" id="R_MAR06884" name="Transport of Adenosylcobalamin into the Intestine" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -412333,7 +411306,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06884">
+            <rdf:Description rdf:about="#R_MAR06884">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/CBLtle"/>
@@ -412343,10 +411316,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01600e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01600e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01600c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01600c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:and>
@@ -412356,7 +411329,7 @@
           </fbc:and>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06887" sboTerm="SBO:0000185" id="MAR06887" name="Transport of L-Cysteine with Symport of Sodium And Antiport of Proton by Snat5 Transporter" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06887" sboTerm="SBO:0000185" id="R_MAR06887" name="Transport of L-Cysteine with Symport of Sodium And Antiport of Proton by Snat5 Transporter" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -412365,7 +411338,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06887">
+            <rdf:Description rdf:about="#R_MAR06887">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CYSSNAT5tc"/>
@@ -412377,20 +411350,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01628e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01628e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01628c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01628c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="mah"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06891" sboTerm="SBO:0000185" id="MAR06891" name="Transport of L-Cystine in Exchange of L-Alanine by B0, +At Transporter" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06891" sboTerm="SBO:0000185" id="R_MAR06891" name="Transport of L-Cystine in Exchange of L-Alanine by B0, +At Transporter" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -412399,7 +411372,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06891">
+            <rdf:Description rdf:about="#R_MAR06891">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CYSTALArBATtc"/>
@@ -412411,12 +411384,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01307c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01629e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01307c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01629e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01307e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01629c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01307e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01629c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:and>
@@ -412424,7 +411397,7 @@
           </fbc:and>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06892" sboTerm="SBO:0000185" id="MAR06892" name="Transport of L-Cystine in Exchange of L-Leucine by B0, +At Transporter" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06892" sboTerm="SBO:0000185" id="R_MAR06892" name="Transport of L-Cystine in Exchange of L-Leucine by B0, +At Transporter" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -412433,7 +411406,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06892">
+            <rdf:Description rdf:about="#R_MAR06892">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CYSTLEUrBATtc"/>
@@ -412445,12 +411418,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01629e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02360c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01629e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02360c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01629c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02360e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01629c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02360e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:and>
@@ -412458,7 +411431,7 @@
           </fbc:and>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06893" sboTerm="SBO:0000185" id="MAR06893" name="Transport of Folate" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06893" sboTerm="SBO:0000185" id="R_MAR06893" name="Transport of Folate" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -412468,7 +411441,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06893">
+            <rdf:Description rdf:about="#R_MAR06893">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FOLt"/>
@@ -412480,18 +411453,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01830e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01830e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01830c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01830c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG30345"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06896" sboTerm="SBO:0000185" id="MAR06896" name="Transport of L-Glutamine by Atb0 Transporter" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06896" sboTerm="SBO:0000185" id="R_MAR06896" name="Transport of L-Glutamine by Atb0 Transporter" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -412500,7 +411473,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06896">
+            <rdf:Description rdf:about="#R_MAR06896">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GLNATB0tc"/>
@@ -412512,20 +411485,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01442e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01975e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01442e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01975e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="2" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01442c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01975c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01442c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01975c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="2" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="GlyT"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06897" sboTerm="SBO:0000185" id="MAR06897" name="Transport of Glutamine by Y+Lat1 Or Y+Lat2 with Symporter of H" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06897" sboTerm="SBO:0000185" id="R_MAR06897" name="Transport of Glutamine by Y+Lat1 Or Y+Lat2 with Symporter of H" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -412534,7 +411507,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06897">
+            <rdf:Description rdf:about="#R_MAR06897">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GLNyLATthc"/>
@@ -412546,14 +411519,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01365c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01975e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01365c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01975e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01365e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01975c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01365e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01975c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:and>
@@ -412565,7 +411538,7 @@
           </fbc:and>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06899" sboTerm="SBO:0000185" id="MAR06899" name="Transport of Glycyl-Glycine by the Apical Pept1 Amino Acid Transporters" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06899" sboTerm="SBO:0000185" id="R_MAR06899" name="Transport of Glycyl-Glycine by the Apical Pept1 Amino Acid Transporters" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -412574,7 +411547,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06899">
+            <rdf:Description rdf:about="#R_MAR06899">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GLYGLYPEPT1tc"/>
@@ -412586,16 +411559,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03621e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03621e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03621c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03621c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG2930"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06900" sboTerm="SBO:0000185" id="MAR06900" name="Transport of Glycylphenylalanine by the Apical Pept1 Amino Acid Transporters" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06900" sboTerm="SBO:0000185" id="R_MAR06900" name="Transport of Glycylphenylalanine by the Apical Pept1 Amino Acid Transporters" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -412604,7 +411577,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06900">
+            <rdf:Description rdf:about="#R_MAR06900">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GLYPHEPEPT1tc"/>
@@ -412616,18 +411589,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03629e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03629e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03629c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03629c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG2930"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06913" sboTerm="SBO:0000185" id="MAR06913" name="Transport of Glycylproline by the Apical Pept1 Amino Acid Transporters" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06913" sboTerm="SBO:0000185" id="R_MAR06913" name="Transport of Glycylproline by the Apical Pept1 Amino Acid Transporters" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -412636,7 +411609,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06913">
+            <rdf:Description rdf:about="#R_MAR06913">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GLYPROPEPT1tc"/>
@@ -412648,18 +411621,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03630e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03630e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03630c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG2930"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06917" sboTerm="SBO:0000185" id="MAR06917" name="Transport of Glycylsarcosine by the Apical Pept1 Amino Acid Transporters" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06917" sboTerm="SBO:0000185" id="R_MAR06917" name="Transport of Glycylsarcosine by the Apical Pept1 Amino Acid Transporters" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -412668,7 +411641,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06917">
+            <rdf:Description rdf:about="#R_MAR06917">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GLYSARPEPT1tc"/>
@@ -412680,18 +411653,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03631e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03631e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03631c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03631c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG2930"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR06919" sboTerm="SBO:0000176" id="MAR06919" name="Binding of Guar Gums with Deoxyxholic Acid" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06919" sboTerm="SBO:0000176" id="R_MAR06919" name="Binding of Guar Gums with Deoxyxholic Acid" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -412701,7 +411674,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06919">
+            <rdf:Description rdf:about="#R_MAR06919">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GUMDCHAe"/>
@@ -412713,14 +411686,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00745e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03638e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00745e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03638e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03639e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03639e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR06920" sboTerm="SBO:0000176" id="MAR06920" name="Binding of Guar Gums with Glycocholate" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06920" sboTerm="SBO:0000176" id="R_MAR06920" name="Binding of Guar Gums with Glycocholate" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -412730,7 +411703,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06920">
+            <rdf:Description rdf:about="#R_MAR06920">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GUMGCHLe"/>
@@ -412742,14 +411715,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01988e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03638e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01988e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03638e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03640e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03640e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR06922" sboTerm="SBO:0000176" id="MAR06922" name="Binding of Guar Gums with Taurocholate" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06922" sboTerm="SBO:0000176" id="R_MAR06922" name="Binding of Guar Gums with Taurocholate" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -412759,7 +411732,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06922">
+            <rdf:Description rdf:about="#R_MAR06922">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GUMTCHOLe"/>
@@ -412771,14 +411744,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02963e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03638e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02963e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03638e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03641e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03641e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07102" sboTerm="SBO:0000185" id="MAR07102" name="Transport of L-Histidine by Y+Lat1 Or Y+Lat2 Transporters" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07102" sboTerm="SBO:0000185" id="R_MAR07102" name="Transport of L-Histidine by Y+Lat1 Or Y+Lat2 Transporters" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -412787,7 +411760,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07102">
+            <rdf:Description rdf:about="#R_MAR07102">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/HISyLATtc"/>
@@ -412799,14 +411772,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01365c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02125e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01365c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02125e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01365e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02125c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01365e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02125c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:and>
@@ -412818,7 +411791,7 @@
           </fbc:and>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07105" sboTerm="SBO:0000185" id="MAR07105" name="Transport of Histidine by Y+Lat1 Or Y+Lat2 with Symporter of H" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07105" sboTerm="SBO:0000185" id="R_MAR07105" name="Transport of Histidine by Y+Lat1 Or Y+Lat2 with Symporter of H" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -412827,7 +411800,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07105">
+            <rdf:Description rdf:about="#R_MAR07105">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/HISyLATthc"/>
@@ -412839,14 +411812,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01365c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02125e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01365c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02125e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01365e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02125c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01365e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02125c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:and>
@@ -412858,7 +411831,7 @@
           </fbc:and>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07148" sboTerm="SBO:0000185" id="MAR07148" name="Transport of Leucylglycine by the Apical Pept1 Amino Acid Transporters" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07148" sboTerm="SBO:0000185" id="R_MAR07148" name="Transport of Leucylglycine by the Apical Pept1 Amino Acid Transporters" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -412867,7 +411840,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07148">
+            <rdf:Description rdf:about="#R_MAR07148">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/LEUGLYPEPT1tc"/>
@@ -412879,18 +411852,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03714e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03714e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03714c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03714c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG2930"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07149" sboTerm="SBO:0000176" id="MAR07149" name="Hydrolysis of Leucylleucine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07149" sboTerm="SBO:0000176" id="R_MAR07149" name="Hydrolysis of Leucylleucine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -412899,7 +411872,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07149">
+            <rdf:Description rdf:about="#R_MAR07149">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/LEULEULAPc"/>
@@ -412911,14 +411884,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03715c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03715c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02360c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02360c" stoichiometry="2" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07150" sboTerm="SBO:0000185" id="MAR07150" name="Transport of Leucylleucine by the Apical Pept1 Amino Acid Transporters" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07150" sboTerm="SBO:0000185" id="R_MAR07150" name="Transport of Leucylleucine by the Apical Pept1 Amino Acid Transporters" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -412927,7 +411900,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07150">
+            <rdf:Description rdf:about="#R_MAR07150">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/LEULEUPEPT1tc"/>
@@ -412939,18 +411912,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03715e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03715e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03715c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03715c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG2930"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07151" sboTerm="SBO:0000185" id="MAR07151" name="Transport of Leucine by Y+Lat1 Or Y+Lat2 with Symporter of H" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07151" sboTerm="SBO:0000185" id="R_MAR07151" name="Transport of Leucine by Y+Lat1 Or Y+Lat2 with Symporter of H" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -412959,7 +411932,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07151">
+            <rdf:Description rdf:about="#R_MAR07151">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/LEUyLAThtc"/>
@@ -412971,14 +411944,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01365c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02360e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01365c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02360e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01365e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02360c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01365e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02360c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:and>
@@ -412990,7 +411963,7 @@
           </fbc:and>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07152" sboTerm="SBO:0000176" id="MAR07152" name="Uptake of Linoleic Acid" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07152" sboTerm="SBO:0000176" id="R_MAR07152" name="Uptake of Linoleic Acid" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -412999,7 +411972,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07152">
+            <rdf:Description rdf:about="#R_MAR07152">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/LINOFATPtc"/>
@@ -413011,20 +411984,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02387e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02387e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01334c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02391c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02391c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Fatp2"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07153" sboTerm="SBO:0000185" id="MAR07153" name="Transport of Methionine by Y+Lat1 Or Y+Lat2 with Symporter of H" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07153" sboTerm="SBO:0000185" id="R_MAR07153" name="Transport of Methionine by Y+Lat1 Or Y+Lat2 with Symporter of H" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -413033,7 +412006,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07153">
+            <rdf:Description rdf:about="#R_MAR07153">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/METyLATthc"/>
@@ -413045,14 +412018,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01365c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02471e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01365c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02471e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01365e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02471c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01365e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02471c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:and>
@@ -413064,7 +412037,7 @@
           </fbc:and>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07154" sboTerm="SBO:0000185" id="MAR07154" name="Transport of Nicotinate" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07154" sboTerm="SBO:0000185" id="R_MAR07154" name="Transport of Nicotinate" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -413073,7 +412046,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07154">
+            <rdf:Description rdf:about="#R_MAR07154">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/NACHORCTL3le"/>
@@ -413085,12 +412058,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02586e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02586e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02586c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02586c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -413099,7 +412072,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07156" sboTerm="SBO:0000176" id="MAR07156" name="Uptake of Octadecenoate" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07156" sboTerm="SBO:0000176" id="R_MAR07156" name="Uptake of Octadecenoate" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -413108,7 +412081,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07156">
+            <rdf:Description rdf:about="#R_MAR07156">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/OLEICFATPtc"/>
@@ -413120,20 +412093,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02646e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02646e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01334c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02647c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02647c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Fatp2"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07157" sboTerm="SBO:0000176" id="MAR07157" name="Transport of Hexadecanoate" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07157" sboTerm="SBO:0000176" id="R_MAR07157" name="Transport of Hexadecanoate" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -413142,7 +412115,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07157">
+            <rdf:Description rdf:about="#R_MAR07157">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PALFATPtc"/>
@@ -413154,20 +412127,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02674e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02674e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01334c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02678c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02678c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Fatp2"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07158" sboTerm="SBO:0000185" id="MAR07158" name="Transport of Phosphatidylcholine" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07158" sboTerm="SBO:0000185" id="R_MAR07158" name="Transport of Phosphatidylcholine" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -413176,7 +412149,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07158">
+            <rdf:Description rdf:about="#R_MAR07158">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PCHOLHSTDe"/>
@@ -413188,13 +412161,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02684c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02684c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02684e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02684e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07159" sboTerm="SBO:0000176" id="MAR07159" name="Binding of Pectins with Deoxycholic Acid" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07159" sboTerm="SBO:0000176" id="R_MAR07159" name="Binding of Pectins with Deoxycholic Acid" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -413204,7 +412177,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07159">
+            <rdf:Description rdf:about="#R_MAR07159">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PECDCHe"/>
@@ -413216,15 +412189,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00745e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03851e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00745e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03851e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03852e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03852e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07176" sboTerm="SBO:0000176" id="MAR07176" name="Binding of Pectins with Glycocholate" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07176" sboTerm="SBO:0000176" id="R_MAR07176" name="Binding of Pectins with Glycocholate" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -413234,7 +412207,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07176">
+            <rdf:Description rdf:about="#R_MAR07176">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PECGCHLe"/>
@@ -413246,15 +412219,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01988e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03851e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01988e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03851e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03853e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03853e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07177" sboTerm="SBO:0000176" id="MAR07177" name="Binding of Pectins with Taurocholate" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07177" sboTerm="SBO:0000176" id="R_MAR07177" name="Binding of Pectins with Taurocholate" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -413264,7 +412237,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07177">
+            <rdf:Description rdf:about="#R_MAR07177">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PECTCHLe"/>
@@ -413276,15 +412249,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02963e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03851e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02963e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03851e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03854e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03854e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07179" sboTerm="SBO:0000185" id="MAR07179" name="Transport of L-Phenylalanine by Atb0 Transporter" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07179" sboTerm="SBO:0000185" id="R_MAR07179" name="Transport of L-Phenylalanine by Atb0 Transporter" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -413293,7 +412266,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07179">
+            <rdf:Description rdf:about="#R_MAR07179">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PHEATB0tc"/>
@@ -413305,20 +412278,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01442e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02724e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01442e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02724e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01442c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02724c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01442c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02724c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="GlyT"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07189" sboTerm="SBO:0000185" id="MAR07189" name="Transport of Phenylalanine by Y+Lat1 Or Y+Lat2 with Symport of H" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07189" sboTerm="SBO:0000185" id="R_MAR07189" name="Transport of Phenylalanine by Y+Lat1 Or Y+Lat2 with Symport of H" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -413327,7 +412300,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07189">
+            <rdf:Description rdf:about="#R_MAR07189">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PHEyLATthc"/>
@@ -413339,14 +412312,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01365c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02724e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01365c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02724e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01365e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02724c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01365e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02724c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:and>
@@ -413358,34 +412331,7 @@
           </fbc:and>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07191" sboTerm="SBO:0000185" id="MAR07191" name="Release of Pantothenate" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
-        <notes>
-          <body xmlns="http://www.w3.org/1999/xhtml">
-            <p>Confidence Level: 0</p>
-            <p>AUTHORS: PMID:21749321</p>
-          </body>
-        </notes>
-        <annotation>
-          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07191">
-              <bqbiol:is>
-                <rdf:Bag>
-                  <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PNTOte"/>
-                  <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR103051"/>
-                  <rdf:li rdf:resource="https://identifiers.org/vmhreaction/PNTORDe"/>
-                </rdf:Bag>
-              </bqbiol:is>
-            </rdf:Description>
-          </rdf:RDF>
-        </annotation>
-        <listOfReactants>
-          <speciesReference species="MAM02680c" stoichiometry="1" constant="true"/>
-        </listOfReactants>
-        <listOfProducts>
-          <speciesReference species="MAM02680e" stoichiometry="1" constant="true"/>
-        </listOfProducts>
-      </reaction>
-      <reaction metaid="MAR07192" sboTerm="SBO:0000185" id="MAR07192" name="Transport of Prolylglycine by the Apical Pept1 Amino Acid Transporters" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07192" sboTerm="SBO:0000185" id="R_MAR07192" name="Transport of Prolylglycine by the Apical Pept1 Amino Acid Transporters" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -413394,7 +412340,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07192">
+            <rdf:Description rdf:about="#R_MAR07192">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PROGLYPEPT1tc"/>
@@ -413406,18 +412352,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03896e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03896e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03896c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03896c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG2930"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07193" sboTerm="SBO:0000176" id="MAR07193" name="Hydrolysis of Glycylproline" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07193" sboTerm="SBO:0000176" id="R_MAR07193" name="Hydrolysis of Glycylproline" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -413426,7 +412372,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07193">
+            <rdf:Description rdf:about="#R_MAR07193">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/AMPTASEPG"/>
@@ -413438,15 +412384,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03896c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03896c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01986c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02770c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02770c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07194" sboTerm="SBO:0000185" id="MAR07194" name="Transport of L-Proline by the Apical Imino Amino Acid Transporters" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07194" sboTerm="SBO:0000185" id="R_MAR07194" name="Transport of L-Proline by the Apical Imino Amino Acid Transporters" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -413455,7 +412401,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07194">
+            <rdf:Description rdf:about="#R_MAR07194">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PROIMINOtc"/>
@@ -413467,20 +412413,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01442e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02770e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01442e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02770e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01442c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02770c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01442c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02770c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG43066"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07195" sboTerm="SBO:0000176" id="MAR07195" name="Binding of Psyllium with Glycocholate" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07195" sboTerm="SBO:0000176" id="R_MAR07195" name="Binding of Psyllium with Glycocholate" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -413489,7 +412435,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07195">
+            <rdf:Description rdf:about="#R_MAR07195">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PSYGCHe"/>
@@ -413501,14 +412447,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01988e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03907e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01988e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03907e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03908e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03908e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07255" sboTerm="SBO:0000176" id="MAR07255" name="Binding of Psyllium with Taurocholate" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07255" sboTerm="SBO:0000176" id="R_MAR07255" name="Binding of Psyllium with Taurocholate" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -413517,7 +412463,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07255">
+            <rdf:Description rdf:about="#R_MAR07255">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PSYTCHe"/>
@@ -413529,14 +412475,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02963e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03907e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02963e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03907e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03909e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03909e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07439" sboTerm="SBO:0000176" id="MAR07439" name="Binding of Psyllium with Taurodeoxycholate" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07439" sboTerm="SBO:0000176" id="R_MAR07439" name="Binding of Psyllium with Taurodeoxycholate" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -413545,7 +412491,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07439">
+            <rdf:Description rdf:about="#R_MAR07439">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PSYTDECHe"/>
@@ -413557,39 +412503,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02964e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03907e" stoichiometry="1" constant="true"/>
-        </listOfReactants>
-        <listOfProducts>
-          <speciesReference species="MAM03910e" stoichiometry="1" constant="true"/>
-        </listOfProducts>
-      </reaction>
-      <reaction metaid="MAR07441" sboTerm="SBO:0000185" id="MAR07441" name="Export of Triglyceride" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
-        <notes>
-          <body xmlns="http://www.w3.org/1999/xhtml">
-            <p>Confidence Level: 0</p>
-            <p>NOTES: https://books.google.se/books/about/Advanced_Nutrition_and_Human_Metabolism.html?id=6CBrPX8oIX8C Sareen S. Gropper, jack L. Smith, James L. Groff (2009) Wadaworth cengage learning, Advanced nutrition and human metabolism, 5th edition, page 142-148.</p>
-          </body>
-        </notes>
-        <annotation>
-          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07441">
-              <bqbiol:is>
-                <rdf:Bag>
-                  <rdf:li rdf:resource="https://identifiers.org/vmhreaction/TAGHSTDe"/>
-                </rdf:Bag>
-              </bqbiol:is>
-            </rdf:Description>
-          </rdf:RDF>
-        </annotation>
-        <listOfReactants>
-          <speciesReference species="MAM02959c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02964e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03907e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02959e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03910e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07589" sboTerm="SBO:0000185" id="MAR07589" name="Transport of Taurine by Pat1" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07589" sboTerm="SBO:0000185" id="R_MAR07589" name="Transport of Taurine by Pat1" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -413598,7 +412519,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07589">
+            <rdf:Description rdf:about="#R_MAR07589">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/TAUPAT1c"/>
@@ -413610,18 +412531,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02961e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02961e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02961c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02961c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG13384"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07592" sboTerm="SBO:0000185" id="MAR07592" name="Transport of Thiamine" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07592" sboTerm="SBO:0000185" id="R_MAR07592" name="Transport of Thiamine" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -413631,7 +412552,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07592">
+            <rdf:Description rdf:about="#R_MAR07592">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/THMATPe"/>
@@ -413643,18 +412564,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02982c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02982c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02982e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02982e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07593" sboTerm="SBO:0000185" id="MAR07593" name="Transport of L-Threonine by Atb0 Transporter" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07593" sboTerm="SBO:0000185" id="R_MAR07593" name="Transport of L-Threonine by Atb0 Transporter" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -413663,7 +412584,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07593">
+            <rdf:Description rdf:about="#R_MAR07593">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/THRATB0tc"/>
@@ -413675,20 +412596,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01442e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02993e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01442e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02993e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01442c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02993c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01442c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02993c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="GlyT"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07595" sboTerm="SBO:0000185" id="MAR07595" name="Transport of L-Tryptophan by Atb0 Transporter" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07595" sboTerm="SBO:0000185" id="R_MAR07595" name="Transport of L-Tryptophan by Atb0 Transporter" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -413697,7 +412618,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07595">
+            <rdf:Description rdf:about="#R_MAR07595">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/TRPATB0tc"/>
@@ -413709,20 +412630,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01442e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03089e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01442e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03089e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01442c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03089c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01442c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03089c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="GlyT"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07657" sboTerm="SBO:0000185" id="MAR07657" name="Transport of L-Tyrosine by Atb0 Transporter" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07657" sboTerm="SBO:0000185" id="R_MAR07657" name="Transport of L-Tyrosine by Atb0 Transporter" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -413731,7 +412652,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07657">
+            <rdf:Description rdf:about="#R_MAR07657">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/TYRATB0tc"/>
@@ -413743,20 +412664,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01442e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03101e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01442e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03101e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01442c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03101c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01442c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03101c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="GlyT"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07659" sboTerm="SBO:0000185" id="MAR07659" name="Transport of Vitamin K into Lymph" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07659" sboTerm="SBO:0000185" id="R_MAR07659" name="Transport of Vitamin K into Lymph" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -413765,7 +412686,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07659">
+            <rdf:Description rdf:about="#R_MAR07659">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/VITKtl"/>
@@ -413777,38 +412698,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02744c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02744c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02744e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02744e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07742" sboTerm="SBO:0000185" id="MAR07742" name="Transport of Cholesterol Ester" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
-        <notes>
-          <body xmlns="http://www.w3.org/1999/xhtml">
-            <p>Confidence Level: 0</p>
-            <p>NOTES: https://books.google.se/books/about/Advanced_Nutrition_and_Human_Metabolism.html?id=6CBrPX8oIX8C Sareen S. Gropper, jack L. Smith, James L. Groff (2009) Wadaworth cengage learning, Advanced nutrition and human metabolism, 5th edition, page 142-148</p>
-          </body>
-        </notes>
-        <annotation>
-          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07742">
-              <bqbiol:is>
-                <rdf:Bag>
-                  <rdf:li rdf:resource="https://identifiers.org/vmhreaction/XOLEST2HSTDle"/>
-                </rdf:Bag>
-              </bqbiol:is>
-            </rdf:Description>
-          </rdf:RDF>
-        </annotation>
-        <listOfReactants>
-          <speciesReference species="MAM01451c" stoichiometry="1" constant="true"/>
-        </listOfReactants>
-        <listOfProducts>
-          <speciesReference species="MAM01451e" stoichiometry="1" constant="true"/>
-        </listOfProducts>
-      </reaction>
-      <reaction metaid="MAR07750" sboTerm="SBO:0000185" id="MAR07750" name="Tanslocation of 1-Alpha, 25-Dihydroxyvitamin D3 to Nucleus" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07750" sboTerm="SBO:0000185" id="R_MAR07750" name="Tanslocation of 1-Alpha, 25-Dihydroxyvitamin D3 to Nucleus" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -413817,7 +412713,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07750">
+            <rdf:Description rdf:about="#R_MAR07750">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/1a25DHVITD3TRn"/>
@@ -413829,13 +412725,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01417c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01417c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01417n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01417n" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07751" sboTerm="SBO:0000185" id="MAR07751" name="Transport of 3Aib_D into Mitochondria" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07751" sboTerm="SBO:0000185" id="R_MAR07751" name="Transport of 3Aib_D into Mitochondria" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -413844,7 +412740,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07751">
+            <rdf:Description rdf:about="#R_MAR07751">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/3AIB_Dtm"/>
@@ -413856,13 +412752,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01633c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01633c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01633m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01633m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07752" sboTerm="SBO:0000185" id="MAR07752" name="Transport of GABA" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07752" sboTerm="SBO:0000185" id="R_MAR07752" name="Transport of GABA" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -413871,7 +412767,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07752">
+            <rdf:Description rdf:about="#R_MAR07752">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/4ABUTtcn"/>
@@ -413883,13 +412779,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00970c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00970c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00970n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00970n" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07753" sboTerm="SBO:0000185" id="MAR07753" name="Transport of Hydroxy-Proline" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07753" sboTerm="SBO:0000185" id="R_MAR07753" name="Transport of Hydroxy-Proline" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -413898,7 +412794,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07753">
+            <rdf:Description rdf:about="#R_MAR07753">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/4HPROLTASCT1"/>
@@ -413910,20 +412806,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01307e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03037c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01307e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03037c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01307c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03037e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01307c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03037e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Eaat1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07754" sboTerm="SBO:0000176" id="MAR07754" name="Adenosine Kinase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07754" sboTerm="SBO:0000176" id="R_MAR07754" name="Adenosine Kinase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -413932,7 +412828,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07754">
+            <rdf:Description rdf:about="#R_MAR07754">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ADNK3"/>
@@ -413946,16 +412842,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01280c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02034c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01280c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02034c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01334c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01948c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01948c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07803" sboTerm="SBO:0000176" id="MAR07803" name="Adenosine Kinase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07803" sboTerm="SBO:0000176" id="R_MAR07803" name="Adenosine Kinase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -413964,7 +412860,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07803">
+            <rdf:Description rdf:about="#R_MAR07803">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ADNK4"/>
@@ -413978,16 +412874,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01280c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01688c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01280c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01688c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01334c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01680c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01680c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07805" sboTerm="SBO:0000185" id="MAR07805" name="Diffusion of S-Adenosyl-L-Homocysteine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07805" sboTerm="SBO:0000185" id="R_MAR07805" name="Diffusion of S-Adenosyl-L-Homocysteine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -413996,7 +412892,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07805">
+            <rdf:Description rdf:about="#R_MAR07805">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/AHCYStm"/>
@@ -414008,13 +412904,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02871m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02871m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02871c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02871c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07807" sboTerm="SBO:0000176" id="MAR07807" name="Uptake of Arachidate" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07807" sboTerm="SBO:0000176" id="R_MAR07807" name="Uptake of Arachidate" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -414023,7 +412919,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07807">
+            <rdf:Description rdf:about="#R_MAR07807">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ARACHFATPc"/>
@@ -414037,17 +412933,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01771e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01771e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01334c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01773c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01773c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07809" sboTerm="SBO:0000185" id="MAR07809" name="D-Aspartate Transport, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07809" sboTerm="SBO:0000185" id="R_MAR07809" name="D-Aspartate Transport, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -414056,7 +412952,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07809">
+            <rdf:Description rdf:about="#R_MAR07809">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ASPDTDe"/>
@@ -414068,13 +412964,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01641c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01641c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01641e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01641e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07811" sboTerm="SBO:0000185" id="MAR07811" name="Aspartate Intake by System Asct-1 Transporter" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07811" sboTerm="SBO:0000185" id="R_MAR07811" name="Aspartate Intake by System Asct-1 Transporter" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -414084,7 +412980,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07811">
+            <rdf:Description rdf:about="#R_MAR07811">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ASPPROASCT1"/>
@@ -414096,20 +412992,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01370e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02770c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01370e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02770c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01370c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02770e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01370c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02770e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Eaat1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07813" sboTerm="SBO:0000176" id="MAR07813" name="Bilirubin Di-Glucuronide Production" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07813" sboTerm="SBO:0000176" id="R_MAR07813" name="Bilirubin Di-Glucuronide Production" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -414118,7 +413014,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07813">
+            <rdf:Description rdf:about="#R_MAR07813">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/BIDGLCURr"/>
@@ -414129,12 +413025,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01398r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03109r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01398r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03109r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01397r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01397r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -414148,7 +413044,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR07817" sboTerm="SBO:0000176" id="MAR07817" name="Cysteamine:Oxygen Oxidoreductase, Extracellular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07817" sboTerm="SBO:0000176" id="R_MAR07817" name="Cysteamine:Oxygen Oxidoreductase, Extracellular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -414156,7 +413052,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07817">
+            <rdf:Description rdf:about="#R_MAR07817">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CYSAMOe"/>
@@ -414170,15 +413066,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02630e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01627e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01627e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02157e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02157e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07819" sboTerm="SBO:0000185" id="MAR07819" name="Transport of Q10" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07819" sboTerm="SBO:0000185" id="R_MAR07819" name="Transport of Q10" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -414186,7 +413082,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07819">
+            <rdf:Description rdf:about="#R_MAR07819">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/Coqe"/>
@@ -414198,13 +413094,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03103e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03103e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03103c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03103c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07821" sboTerm="SBO:0000185" id="MAR07821" name="Transport of dATP into Mitochondria" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07821" sboTerm="SBO:0000185" id="R_MAR07821" name="Transport of dATP into Mitochondria" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -414213,7 +413109,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07821">
+            <rdf:Description rdf:about="#R_MAR07821">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/DATPtm_cho"/>
@@ -414225,13 +413121,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01642c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01642c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01642m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01642m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07823" sboTerm="SBO:0000185" id="MAR07823" name="Transport of dCTP into Mitochondria" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07823" sboTerm="SBO:0000185" id="R_MAR07823" name="Transport of dCTP into Mitochondria" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -414240,7 +413136,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07823">
+            <rdf:Description rdf:about="#R_MAR07823">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/DNDPt51m"/>
@@ -414252,13 +413148,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01645c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01645c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01645m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01645m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR07926" sboTerm="SBO:0000185" id="MAR07926" name="Transport of dGTP into Mitochondria" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR07926" sboTerm="SBO:0000185" id="R_MAR07926" name="Transport of dGTP into Mitochondria" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -414267,7 +413163,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR07926">
+            <rdf:Description rdf:about="#R_MAR07926">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/DGTPtm"/>
@@ -414279,13 +413175,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01688c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01688c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01688m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01688m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08111" sboTerm="SBO:0000185" id="MAR08111" name="Transport of Dihydroxyacetone Phosphate into Cytosol" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08111" sboTerm="SBO:0000185" id="R_MAR08111" name="Transport of Dihydroxyacetone Phosphate into Cytosol" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -414293,7 +413189,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08111">
+            <rdf:Description rdf:about="#R_MAR08111">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/DHAPtm"/>
@@ -414305,13 +413201,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01690m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01690m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01690c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01690c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08204" sboTerm="SBO:0000176" id="MAR08204" name="Pyrophasphatase (Dephospho Coenzyme A, Extracellular)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08204" sboTerm="SBO:0000176" id="R_MAR08204" name="Pyrophasphatase (Dephospho Coenzyme A, Extracellular)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -414319,7 +413215,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08204">
+            <rdf:Description rdf:about="#R_MAR08204">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/DPCOAPPe"/>
@@ -414331,16 +413227,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01674e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01674e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01334e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039e" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02741e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02741e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08274" sboTerm="SBO:0000176" id="MAR08274" name="DTMP Kinase in Mitochondria" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08274" sboTerm="SBO:0000176" id="R_MAR08274" name="DTMP Kinase in Mitochondria" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -414349,7 +413245,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08274">
+            <rdf:Description rdf:about="#R_MAR08274">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/DTMPKm"/>
@@ -414363,18 +413259,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01752m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01752m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01747m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01747m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG5757"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08301" sboTerm="SBO:0000185" id="MAR08301" name="Transport of dTTP into Mitochondria" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08301" sboTerm="SBO:0000185" id="R_MAR08301" name="Transport of dTTP into Mitochondria" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -414383,7 +413279,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08301">
+            <rdf:Description rdf:about="#R_MAR08301">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/DNDPt47m"/>
@@ -414395,13 +413291,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01753c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01753c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01753m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01753m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08386" sboTerm="SBO:0000627" id="MAR08386" name="Exchange of Hydroxy Proline" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08386" sboTerm="SBO:0000627" id="R_MAR08386" name="Exchange of Hydroxy Proline" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -414409,7 +413305,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08386">
+            <rdf:Description rdf:about="#R_MAR08386">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_4hpro_LT_e"/>
@@ -414421,10 +413317,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03037e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03037e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR08400" sboTerm="SBO:0000627" id="MAR08400" name="Exchange of Adenosylcobalamin" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08400" sboTerm="SBO:0000627" id="R_MAR08400" name="Exchange of Adenosylcobalamin" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -414432,7 +413328,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08400">
+            <rdf:Description rdf:about="#R_MAR08400">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/EX_adpcbl[e]"/>
@@ -414442,10 +413338,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01600e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01600e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR08422" sboTerm="SBO:0000627" id="MAR08422" name="Exchange of Alanylalanine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08422" sboTerm="SBO:0000627" id="R_MAR08422" name="Exchange of Alanylalanine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -414453,7 +413349,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08422">
+            <rdf:Description rdf:about="#R_MAR08422">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_alaala_e"/>
@@ -414465,10 +413361,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03164e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03164e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR08423" sboTerm="SBO:0000627" id="MAR08423" name="Exchange of Beta Glucans" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08423" sboTerm="SBO:0000627" id="R_MAR08423" name="Exchange of Beta Glucans" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -414476,7 +413372,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08423">
+            <rdf:Description rdf:about="#R_MAR08423">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_bglc_e"/>
@@ -414488,10 +413384,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03483e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03483e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR08644" sboTerm="SBO:0000627" id="MAR08644" name="Exchange of Carnosine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08644" sboTerm="SBO:0000627" id="R_MAR08644" name="Exchange of Carnosine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -414499,7 +413395,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08644">
+            <rdf:Description rdf:about="#R_MAR08644">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_carn_e"/>
@@ -414511,10 +413407,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01423e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01423e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR08646" sboTerm="SBO:0000627" id="MAR08646" name="Exchange of Deoxycholic Acid" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08646" sboTerm="SBO:0000627" id="R_MAR08646" name="Exchange of Deoxycholic Acid" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -414522,7 +413418,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08646">
+            <rdf:Description rdf:about="#R_MAR08646">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_dchac_e"/>
@@ -414534,10 +413430,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00745e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00745e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR08647" sboTerm="SBO:0000627" id="MAR08647" name="Exchange of Beta Glucan-Glycocholate Complex" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08647" sboTerm="SBO:0000627" id="R_MAR08647" name="Exchange of Beta Glucan-Glycocholate Complex" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -414545,7 +413441,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08647">
+            <rdf:Description rdf:about="#R_MAR08647">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_glgchlo_e"/>
@@ -414557,10 +413453,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03595e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03595e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR08649" sboTerm="SBO:0000627" id="MAR08649" name="Exchange of Beta Glucan-Taurocholic Acid Complex" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08649" sboTerm="SBO:0000627" id="R_MAR08649" name="Exchange of Beta Glucan-Taurocholic Acid Complex" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -414568,7 +413464,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08649">
+            <rdf:Description rdf:about="#R_MAR08649">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_gltcho_e"/>
@@ -414580,10 +413476,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03604e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03604e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR08650" sboTerm="SBO:0000627" id="MAR08650" name="Exchange of Beta Glucan-Taurodeoxycholic Acid Complex" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08650" sboTerm="SBO:0000627" id="R_MAR08650" name="Exchange of Beta Glucan-Taurodeoxycholic Acid Complex" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -414591,7 +413487,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08650">
+            <rdf:Description rdf:about="#R_MAR08650">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_gltdechol_e"/>
@@ -414603,10 +413499,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03605e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03605e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR08701" sboTerm="SBO:0000627" id="MAR08701" name="Exchange of Glycylglycine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08701" sboTerm="SBO:0000627" id="R_MAR08701" name="Exchange of Glycylglycine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -414614,7 +413510,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08701">
+            <rdf:Description rdf:about="#R_MAR08701">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_glygly_e"/>
@@ -414626,10 +413522,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03621e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03621e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR08705" sboTerm="SBO:0000627" id="MAR08705" name="Exchange of Glycylsarcosine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08705" sboTerm="SBO:0000627" id="R_MAR08705" name="Exchange of Glycylsarcosine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -414637,7 +413533,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08705">
+            <rdf:Description rdf:about="#R_MAR08705">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_glysar_e"/>
@@ -414649,10 +413545,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03631e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03631e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR08707" sboTerm="SBO:0000627" id="MAR08707" name="Exchange of Guar Gums" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08707" sboTerm="SBO:0000627" id="R_MAR08707" name="Exchange of Guar Gums" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -414660,7 +413556,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08707">
+            <rdf:Description rdf:about="#R_MAR08707">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_gum_e"/>
@@ -414672,10 +413568,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03638e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03638e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR08708" sboTerm="SBO:0000627" id="MAR08708" name="Exchange of Guar Gum-Deoxyxholic Acid Complex" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08708" sboTerm="SBO:0000627" id="R_MAR08708" name="Exchange of Guar Gum-Deoxyxholic Acid Complex" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -414683,7 +413579,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08708">
+            <rdf:Description rdf:about="#R_MAR08708">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_gumdchac_e"/>
@@ -414695,10 +413591,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03639e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03639e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR08832" sboTerm="SBO:0000627" id="MAR08832" name="Exchange of Guar Gum-Glycocholate Complex" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08832" sboTerm="SBO:0000627" id="R_MAR08832" name="Exchange of Guar Gum-Glycocholate Complex" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -414706,7 +413602,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08832">
+            <rdf:Description rdf:about="#R_MAR08832">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_gumgchol_e"/>
@@ -414718,10 +413614,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03640e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03640e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR08916" sboTerm="SBO:0000627" id="MAR08916" name="Exchange of Guar Gum-Taurocholic Acid Complex" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08916" sboTerm="SBO:0000627" id="R_MAR08916" name="Exchange of Guar Gum-Taurocholic Acid Complex" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -414729,7 +413625,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08916">
+            <rdf:Description rdf:about="#R_MAR08916">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_gumtchol_e"/>
@@ -414741,10 +413637,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03641e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03641e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR08948" sboTerm="SBO:0000627" id="MAR08948" name="Exchange of Leucylglycine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08948" sboTerm="SBO:0000627" id="R_MAR08948" name="Exchange of Leucylglycine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -414752,7 +413648,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08948">
+            <rdf:Description rdf:about="#R_MAR08948">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_leugly_e"/>
@@ -414764,10 +413660,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03714e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03714e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR08949" sboTerm="SBO:0000627" id="MAR08949" name="Exchange of Leucylleucine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08949" sboTerm="SBO:0000627" id="R_MAR08949" name="Exchange of Leucylleucine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -414775,7 +413671,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08949">
+            <rdf:Description rdf:about="#R_MAR08949">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_leuleu_e"/>
@@ -414787,10 +413683,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03715e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03715e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR08950" sboTerm="SBO:0000627" id="MAR08950" name="Exchange of Pectins" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08950" sboTerm="SBO:0000627" id="R_MAR08950" name="Exchange of Pectins" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -414798,7 +413694,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08950">
+            <rdf:Description rdf:about="#R_MAR08950">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_pect_e"/>
@@ -414810,10 +413706,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03851e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03851e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR08951" sboTerm="SBO:0000627" id="MAR08951" name="Exchange of Pectin-Deoxycholic Acid Complex" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08951" sboTerm="SBO:0000627" id="R_MAR08951" name="Exchange of Pectin-Deoxycholic Acid Complex" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -414821,7 +413717,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08951">
+            <rdf:Description rdf:about="#R_MAR08951">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_pectindchac_e"/>
@@ -414833,10 +413729,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03852e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03852e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR08952" sboTerm="SBO:0000627" id="MAR08952" name="Exchange of Pectin-Glycocholate Complex" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08952" sboTerm="SBO:0000627" id="R_MAR08952" name="Exchange of Pectin-Glycocholate Complex" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -414844,7 +413740,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08952">
+            <rdf:Description rdf:about="#R_MAR08952">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_pectingchol_e"/>
@@ -414856,10 +413752,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03853e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03853e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR08953" sboTerm="SBO:0000627" id="MAR08953" name="Exchange of Pectin-Taurocholic Acid Complex" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08953" sboTerm="SBO:0000627" id="R_MAR08953" name="Exchange of Pectin-Taurocholic Acid Complex" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -414867,7 +413763,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08953">
+            <rdf:Description rdf:about="#R_MAR08953">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_pectintchol_e"/>
@@ -414879,10 +413775,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03854e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03854e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR08954" sboTerm="SBO:0000627" id="MAR08954" name="Exchange of Psyllium" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08954" sboTerm="SBO:0000627" id="R_MAR08954" name="Exchange of Psyllium" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -414890,7 +413786,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08954">
+            <rdf:Description rdf:about="#R_MAR08954">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_psyl_e"/>
@@ -414902,10 +413798,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03907e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03907e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR08955" sboTerm="SBO:0000627" id="MAR08955" name="Exchange of Psyllium-Glycocholic Acid Complex" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08955" sboTerm="SBO:0000627" id="R_MAR08955" name="Exchange of Psyllium-Glycocholic Acid Complex" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -414913,7 +413809,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08955">
+            <rdf:Description rdf:about="#R_MAR08955">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_psylchol_e"/>
@@ -414925,10 +413821,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03908e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03908e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR08956" sboTerm="SBO:0000627" id="MAR08956" name="Exchange of Psyllium-Taurocholic Acid Complex" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08956" sboTerm="SBO:0000627" id="R_MAR08956" name="Exchange of Psyllium-Taurocholic Acid Complex" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -414936,7 +413832,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08956">
+            <rdf:Description rdf:about="#R_MAR08956">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_psyltchol_e"/>
@@ -414948,10 +413844,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03909e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03909e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR08957" sboTerm="SBO:0000627" id="MAR08957" name="Exchange of Psyllium-Taurodeoxycholic Acid Complex" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08957" sboTerm="SBO:0000627" id="R_MAR08957" name="Exchange of Psyllium-Taurodeoxycholic Acid Complex" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -414959,7 +413855,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08957">
+            <rdf:Description rdf:about="#R_MAR08957">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_psyltdechol_e"/>
@@ -414971,10 +413867,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03910e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03910e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR08958" sboTerm="SBO:0000627" id="MAR08958" name="Exchange of Sulfocysteine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08958" sboTerm="SBO:0000627" id="R_MAR08958" name="Exchange of Sulfocysteine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -414982,7 +413878,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08958">
+            <rdf:Description rdf:about="#R_MAR08958">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_slfcys_e"/>
@@ -414994,10 +413890,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03933e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03933e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR08959" sboTerm="SBO:0000627" id="MAR08959" name="Exchange of Taurodeoxycholic Acid" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08959" sboTerm="SBO:0000627" id="R_MAR08959" name="Exchange of Taurodeoxycholic Acid" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -415005,7 +413901,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08959">
+            <rdf:Description rdf:about="#R_MAR08959">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_tdechola_e"/>
@@ -415017,10 +413913,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02964e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02964e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR08960" sboTerm="SBO:0000627" id="MAR08960" name="Exchange of Cysteaminium" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08960" sboTerm="SBO:0000627" id="R_MAR08960" name="Exchange of Cysteaminium" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -415028,7 +413924,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08960">
+            <rdf:Description rdf:about="#R_MAR08960">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_cysam_e"/>
@@ -415040,10 +413936,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01627e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01627e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR08961" sboTerm="SBO:0000627" id="MAR08961" name="Exchange of Dephospho Coenzyme A" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08961" sboTerm="SBO:0000627" id="R_MAR08961" name="Exchange of Dephospho Coenzyme A" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -415051,7 +413947,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08961">
+            <rdf:Description rdf:about="#R_MAR08961">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_dpcoa_e"/>
@@ -415063,10 +413959,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01674e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01674e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR08962" sboTerm="SBO:0000627" id="MAR08962" name="Exchange of FMN" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08962" sboTerm="SBO:0000627" id="R_MAR08962" name="Exchange of FMN" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -415074,7 +413970,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08962">
+            <rdf:Description rdf:about="#R_MAR08962">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_fmn_e"/>
@@ -415086,10 +413982,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01828e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01828e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR08963" sboTerm="SBO:0000627" id="MAR08963" name="Exchange of Hypotaurine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08963" sboTerm="SBO:0000627" id="R_MAR08963" name="Exchange of Hypotaurine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -415097,7 +413993,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08963">
+            <rdf:Description rdf:about="#R_MAR08963">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_hyptaur_e"/>
@@ -415109,10 +414005,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02157e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02157e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR08964" sboTerm="SBO:0000627" id="MAR08964" name="Exchange of Pantetheine 4-Phosphate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08964" sboTerm="SBO:0000627" id="R_MAR08964" name="Exchange of Pantetheine 4-Phosphate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -415120,7 +414016,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08964">
+            <rdf:Description rdf:about="#R_MAR08964">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_pan4p_e"/>
@@ -415132,10 +414028,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02741e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02741e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR08965" sboTerm="SBO:0000627" id="MAR08965" name="Exchange of Pantetheine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08965" sboTerm="SBO:0000627" id="R_MAR08965" name="Exchange of Pantetheine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -415143,7 +414039,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08965">
+            <rdf:Description rdf:about="#R_MAR08965">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_ptth_e"/>
@@ -415155,10 +414051,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02679e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02679e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR08966" sboTerm="SBO:0000627" id="MAR08966" name="Exchange of Ubiquinone" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08966" sboTerm="SBO:0000627" id="R_MAR08966" name="Exchange of Ubiquinone" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -415166,7 +414062,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08966">
+            <rdf:Description rdf:about="#R_MAR08966">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_q10_e"/>
@@ -415178,10 +414074,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03103e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03103e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR08967" sboTerm="SBO:0000627" id="MAR08967" name="Exchange of Ubiquinol" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08967" sboTerm="SBO:0000627" id="R_MAR08967" name="Exchange of Ubiquinol" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -415189,7 +414085,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08967">
+            <rdf:Description rdf:about="#R_MAR08967">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_q10h2_e"/>
@@ -415201,10 +414097,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03102e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03102e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR08969" sboTerm="SBO:0000176" id="MAR08969" name="Acid Phosphatase (FMN), Extracellular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08969" sboTerm="SBO:0000176" id="R_MAR08969" name="Acid Phosphatase (FMN), Extracellular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -415212,7 +414108,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08969">
+            <rdf:Description rdf:about="#R_MAR08969">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ACP1e"/>
@@ -415226,15 +414122,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01828e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01828e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02751e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02842e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02842e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08970" sboTerm="SBO:0000185" id="MAR08970" name="Transport of Farnesyl Diphosphate into the Endoplasmic Reticulum" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08970" sboTerm="SBO:0000185" id="R_MAR08970" name="Transport of Farnesyl Diphosphate into the Endoplasmic Reticulum" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -415243,7 +414139,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08970">
+            <rdf:Description rdf:about="#R_MAR08970">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FRDPtcr"/>
@@ -415255,46 +414151,51 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01806c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01806c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01806r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01806r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08971" sboTerm="SBO:0000176" id="MAR08971" name="Glucose 6-Phosphate Dehydrogenase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08971" sboTerm="SBO:0000176" id="R_MAR08971" name="Glucose 6-Phosphate Dehydrogenase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
-            <p>AUTHORS: PMID:4382012;PMID:13575411</p>
+            <p>AUTHORS: PMID:13575411;PMID:15774558;PMID:16756494;PMID:2753047;PMID:4169027;PMID:4382012</p>
             <p>NOTES: Harpers illustrated Biochemistry (2009) 28th edition pages 174-183, ISBN:9781282335806</p>
           </body>
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08971">
+            <rdf:Description rdf:about="#R_MAR08971">
               <bqbiol:is>
                 <rdf:Bag>
+                  <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.49"/>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/G6PDH2c"/>
+                  <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/G6PDH2r"/>
+                  <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R00835"/>
+                  <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR99907"/>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/G6PDH2c"/>
+                  <rdf:li rdf:resource="https://identifiers.org/vmhreaction/G6PDH2r"/>
                 </rdf:Bag>
               </bqbiol:is>
             </rdf:Description>
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01968c" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM01968c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01961c" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM01961c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Zw"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08972" sboTerm="SBO:0000185" id="MAR08972" name="Glutamate Intake by System Asct-1 Transporter" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08972" sboTerm="SBO:0000185" id="R_MAR08972" name="Glutamate Intake by System Asct-1 Transporter" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -415304,7 +414205,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08972">
+            <rdf:Description rdf:about="#R_MAR08972">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GLUPROASCT1"/>
@@ -415316,54 +414217,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01974e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02770c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01974e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02770c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01974c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02770e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01974c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02770e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Eaat1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08973" sboTerm="SBO:0000176" id="MAR08973" name="Phosphogluconate Dehydrogenase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
-        <notes>
-          <body xmlns="http://www.w3.org/1999/xhtml">
-            <p>Confidence Level: 0</p>
-            <p>AUTHORS: PMID:4382012;PMID:13575411</p>
-            <p>NOTES: Harpers illustrated Biochemistry (2009) 28th edition pages 174-183, ISBN:9781282335806</p>
-          </body>
-        </notes>
-        <annotation>
-          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08973">
-              <bqbiol:is>
-                <rdf:Bag>
-                  <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.44"/>
-                  <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GNDc"/>
-                  <rdf:li rdf:resource="https://identifiers.org/vmhreaction/GNDc"/>
-                </rdf:Bag>
-              </bqbiol:is>
-            </rdf:Description>
-          </rdf:RDF>
-        </annotation>
-        <listOfReactants>
-          <speciesReference species="MAM01169c" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="3" constant="true"/>
-        </listOfReactants>
-        <listOfProducts>
-          <speciesReference species="MAM01596c" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM02846c" stoichiometry="3" constant="true"/>
-        </listOfProducts>
-        <fbc:geneProductAssociation>
-          <fbc:geneProductRef fbc:geneProduct="Pgd"/>
-        </fbc:geneProductAssociation>
-      </reaction>
-      <reaction metaid="MAR08974" sboTerm="SBO:0000176" id="MAR08974" name="Hypotaurine Oxidase, Extracellular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08974" sboTerm="SBO:0000176" id="R_MAR08974" name="Hypotaurine Oxidase, Extracellular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -415371,7 +414238,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08974">
+            <rdf:Description rdf:about="#R_MAR08974">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/HYPTROXe"/>
@@ -415383,14 +414250,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02630e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02157e" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02630e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02157e" stoichiometry="2" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02961e" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02961e" stoichiometry="2" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08975" sboTerm="SBO:0000176" id="MAR08975" name="Insosine Kinase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08975" sboTerm="SBO:0000176" id="R_MAR08975" name="Insosine Kinase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -415398,7 +414265,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08975">
+            <rdf:Description rdf:about="#R_MAR08975">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/INSK"/>
@@ -415412,16 +414279,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02170c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02170c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02167c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02167c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08976" sboTerm="SBO:0000185" id="MAR08976" name="K Transport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08976" sboTerm="SBO:0000185" id="R_MAR08976" name="K Transport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -415429,7 +414296,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08976">
+            <rdf:Description rdf:about="#R_MAR08976">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/Kt3r"/>
@@ -415441,15 +414308,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02200e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02200e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02200c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02200c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08977" sboTerm="SBO:0000185" id="MAR08977" name="Lactate Transport" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08977" sboTerm="SBO:0000185" id="R_MAR08977" name="Lactate Transport" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -415458,7 +414325,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08977">
+            <rdf:Description rdf:about="#R_MAR08977">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/LACLt"/>
@@ -415470,13 +414337,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02403x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02403x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02403c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02403c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08978" sboTerm="SBO:0000176" id="MAR08978" name="Lysosomal Acid Phosphorylase (CoA)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08978" sboTerm="SBO:0000176" id="R_MAR08978" name="Lysosomal Acid Phosphorylase (CoA)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -415484,7 +414351,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08978">
+            <rdf:Description rdf:about="#R_MAR08978">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/LAPCOAe"/>
@@ -415496,15 +414363,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02751e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01674e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01674e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08979" sboTerm="SBO:0000176" id="MAR08979" name="Hydrolysis of Leucylglycine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08979" sboTerm="SBO:0000176" id="R_MAR08979" name="Hydrolysis of Leucylglycine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -415513,7 +414380,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08979">
+            <rdf:Description rdf:about="#R_MAR08979">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/LEUGLYHYc"/>
@@ -415525,15 +414392,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03714c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03714c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01986c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02360c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02360c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08980" sboTerm="SBO:0000185" id="MAR08980" name="Transport Reaction for Malate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08980" sboTerm="SBO:0000185" id="R_MAR08980" name="Transport Reaction for Malate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -415542,7 +414409,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08980">
+            <rdf:Description rdf:about="#R_MAR08980">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/MAL_Ltx"/>
@@ -415554,13 +414421,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02439x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02439x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02439c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02439c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08981" sboTerm="SBO:0000176" id="MAR08981" name="Malate Dehydrogenase, Peroxisomal" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08981" sboTerm="SBO:0000176" id="R_MAR08981" name="Malate Dehydrogenase, Peroxisomal" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -415569,7 +414436,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08981">
+            <rdf:Description rdf:about="#R_MAR08981">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/MDHp"/>
@@ -415581,16 +414448,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02552x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02439x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02439x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02633x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02633x" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08982" sboTerm="SBO:0000185" id="MAR08982" name="Transport of NAD into Mitochondria" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08982" sboTerm="SBO:0000185" id="R_MAR08982" name="Transport of NAD into Mitochondria" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -415598,7 +414465,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08982">
+            <rdf:Description rdf:about="#R_MAR08982">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/NADtm"/>
@@ -415610,13 +414477,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02552c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02552m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08983" sboTerm="SBO:0000176" id="MAR08983" name="Uptake of Octadecanoate (N-C18:0)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08983" sboTerm="SBO:0000176" id="R_MAR08983" name="Uptake of Octadecanoate (N-C18:0)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -415625,7 +414492,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08983">
+            <rdf:Description rdf:about="#R_MAR08983">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/OCDCAFATPc"/>
@@ -415637,17 +414504,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02938e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02938e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01334c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02941c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02941c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08984" sboTerm="SBO:0000176" id="MAR08984" name="Phosphatase, Extracellular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08984" sboTerm="SBO:0000176" id="R_MAR08984" name="Phosphatase, Extracellular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -415655,7 +414522,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08984">
+            <rdf:Description rdf:about="#R_MAR08984">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PAN4PPe"/>
@@ -415667,15 +414534,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02741e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02741e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02751e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02679e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02679e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08985" sboTerm="SBO:0000176" id="MAR08985" name="6-Phosphogluconolactonase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08985" sboTerm="SBO:0000176" id="R_MAR08985" name="6-Phosphogluconolactonase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -415685,7 +414552,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08985">
+            <rdf:Description rdf:about="#R_MAR08985">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.31"/>
@@ -415697,18 +414564,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01961c" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM01961c" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="3" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01169c" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM01169c" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="3" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG17333"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08986" sboTerm="SBO:0000176" id="MAR08986" name="(R)-Pantetheine Amidohydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08986" sboTerm="SBO:0000176" id="R_MAR08986" name="(R)-Pantetheine Amidohydrolase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -415716,7 +414583,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08986">
+            <rdf:Description rdf:about="#R_MAR08986">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PNTEHe"/>
@@ -415728,15 +414595,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02679e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02679e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02680e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01627e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02680e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01627e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08987" sboTerm="SBO:0000185" id="MAR08987" name="Diphopshate Transporter, Mitochondrial" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08987" sboTerm="SBO:0000185" id="R_MAR08987" name="Diphopshate Transporter, Mitochondrial" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -415745,7 +414612,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08987">
+            <rdf:Description rdf:about="#R_MAR08987">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PPItm"/>
@@ -415757,13 +414624,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02759m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08988" sboTerm="SBO:0000185" id="MAR08988" name="D-Proline Transport, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08988" sboTerm="SBO:0000185" id="R_MAR08988" name="D-Proline Transport, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -415772,7 +414639,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08988">
+            <rdf:Description rdf:about="#R_MAR08988">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PRO_Dtde"/>
@@ -415784,13 +414651,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01742c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01742c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01742e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01742e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08989" sboTerm="SBO:0000185" id="MAR08989" name="Diffusion of Putriscine into the Endothelial Cells" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08989" sboTerm="SBO:0000185" id="R_MAR08989" name="Diffusion of Putriscine into the Endothelial Cells" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -415799,7 +414666,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08989">
+            <rdf:Description rdf:about="#R_MAR08989">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PTRCtex2"/>
@@ -415811,13 +414678,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02812e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02812e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02812c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02812c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08990" sboTerm="SBO:0000176" id="MAR08990" name="Phosphopantetheine Adenylyltransferase, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08990" sboTerm="SBO:0000176" id="R_MAR08990" name="Phosphopantetheine Adenylyltransferase, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -415825,7 +414692,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08990">
+            <rdf:Description rdf:about="#R_MAR08990">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PTPATe"/>
@@ -415837,16 +414704,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02741e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02741e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02759e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01674e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01674e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08991" sboTerm="SBO:0000185" id="MAR08991" name="Transport of Ubiquinol into Lymph" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08991" sboTerm="SBO:0000185" id="R_MAR08991" name="Transport of Ubiquinol into Lymph" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -415855,7 +414722,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08991">
+            <rdf:Description rdf:about="#R_MAR08991">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/Q10H2e"/>
@@ -415867,13 +414734,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03102c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03102c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03102e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03102e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08992" sboTerm="SBO:0000176" id="MAR08992" name="Ribulose 5-Phosphate 3-Epimerase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08992" sboTerm="SBO:0000176" id="R_MAR08992" name="Ribulose 5-Phosphate 3-Epimerase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -415883,7 +414750,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08992">
+            <rdf:Description rdf:about="#R_MAR08992">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/5.1.3.1"/>
@@ -415895,16 +414762,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02846c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02846c" stoichiometry="2" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01761c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01761c" stoichiometry="2" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Rpe"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR08993" sboTerm="SBO:0000176" id="MAR08993" name="Formation of Sulfocysteine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08993" sboTerm="SBO:0000176" id="R_MAR08993" name="Formation of Sulfocysteine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -415913,7 +414780,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08993">
+            <rdf:Description rdf:about="#R_MAR08993">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/SFCYSc"/>
@@ -415925,15 +414792,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01628c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02949c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01628c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02949c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03933c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03933c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08994" sboTerm="SBO:0000185" id="MAR08994" name="Secretion of Sulfocysteine into Extracellular Space" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08994" sboTerm="SBO:0000185" id="R_MAR08994" name="Secretion of Sulfocysteine into Extracellular Space" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -415942,7 +414809,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08994">
+            <rdf:Description rdf:about="#R_MAR08994">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/SFCYSe"/>
@@ -415954,13 +414821,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03933c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03933c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03933e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03933e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08995" sboTerm="SBO:0000185" id="MAR08995" name="Secretion of Taurine" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08995" sboTerm="SBO:0000185" id="R_MAR08995" name="Secretion of Taurine" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -415969,7 +414836,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08995">
+            <rdf:Description rdf:about="#R_MAR08995">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/TAURt"/>
@@ -415981,13 +414848,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02961c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02961c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02961e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02961e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08996" sboTerm="SBO:0000176" id="MAR08996" name="Uptake of Hexadecanoate" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08996" sboTerm="SBO:0000176" id="R_MAR08996" name="Uptake of Hexadecanoate" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -415996,7 +414863,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08996">
+            <rdf:Description rdf:about="#R_MAR08996">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/TTDCAFATPc"/>
@@ -416008,17 +414875,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02494e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02494e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01334c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02495c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02495c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08997" sboTerm="SBO:0000185" id="MAR08997" name="Transport of Ubiquinol into Cytosol" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08997" sboTerm="SBO:0000185" id="R_MAR08997" name="Transport of Ubiquinol into Cytosol" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -416026,7 +414893,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08997">
+            <rdf:Description rdf:about="#R_MAR08997">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/q10h2tc"/>
@@ -416038,13 +414905,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03102m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03102m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03102c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03102c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08998" sboTerm="SBO:0000185" id="MAR08998" name="Transport of Ubiquinone into Mitochondria" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08998" sboTerm="SBO:0000185" id="R_MAR08998" name="Transport of Ubiquinone into Mitochondria" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -416052,7 +414919,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08998">
+            <rdf:Description rdf:about="#R_MAR08998">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/q10tm"/>
@@ -416064,13 +414931,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03103c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03103c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03103m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03103m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08999" sboTerm="SBO:0000185" id="MAR08999" name="Transport of 3- (4-Hydroxyphenyl)Pyruvate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08999" sboTerm="SBO:0000185" id="R_MAR08999" name="Transport of 3- (4-Hydroxyphenyl)Pyruvate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -416078,7 +414945,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08999">
+            <rdf:Description rdf:about="#R_MAR08999">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/34HPPte"/>
@@ -416090,13 +414957,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01005e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01005e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01005c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01005c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09000" sboTerm="SBO:0000185" id="MAR09000" name="Transport of 3-Methyl-2-Oxobutanoate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09000" sboTerm="SBO:0000185" id="R_MAR09000" name="Transport of 3-Methyl-2-Oxobutanoate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -416104,7 +414971,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09000">
+            <rdf:Description rdf:about="#R_MAR09000">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/3MOBte"/>
@@ -416116,13 +414983,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00824e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00824e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00824c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00824c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09001" sboTerm="SBO:0000185" id="MAR09001" name="Transport of 3-Methyl-2-Oxopentanoate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09001" sboTerm="SBO:0000185" id="R_MAR09001" name="Transport of 3-Methyl-2-Oxopentanoate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -416130,7 +414997,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09001">
+            <rdf:Description rdf:about="#R_MAR09001">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/3MOPt"/>
@@ -416142,13 +415009,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00669e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00669e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00669c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00669c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09002" sboTerm="SBO:0000185" id="MAR09002" name="Transport of Trans-4-Hydroxy-L-Proline" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09002" sboTerm="SBO:0000185" id="R_MAR09002" name="Transport of Trans-4-Hydroxy-L-Proline" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -416156,7 +415023,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09002">
+            <rdf:Description rdf:about="#R_MAR09002">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/4HPRO_LTte"/>
@@ -416168,13 +415035,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03037e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03037e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03037m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03037m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09003" sboTerm="SBO:0000185" id="MAR09003" name="Transport of 4-Methyl-2-Oxopentanoate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09003" sboTerm="SBO:0000185" id="R_MAR09003" name="Transport of 4-Methyl-2-Oxopentanoate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -416182,7 +415049,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09003">
+            <rdf:Description rdf:about="#R_MAR09003">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/4MOPte"/>
@@ -416194,13 +415061,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01013e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01013e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01013c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01013c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09004" sboTerm="SBO:0000185" id="MAR09004" name="Transport of 5-S-Methyl-5-Thioadenosine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09004" sboTerm="SBO:0000185" id="R_MAR09004" name="Transport of 5-S-Methyl-5-Thioadenosine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -416208,7 +415075,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09004">
+            <rdf:Description rdf:about="#R_MAR09004">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/5MTAte"/>
@@ -416220,13 +415087,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01116e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01116e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01116c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01116c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09005" sboTerm="SBO:0000185" id="MAR09005" name="Transport of 5-Oxoprolinate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09005" sboTerm="SBO:0000185" id="R_MAR09005" name="Transport of 5-Oxoprolinate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -416234,7 +415101,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09005">
+            <rdf:Description rdf:about="#R_MAR09005">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/5OXPROt"/>
@@ -416246,15 +415113,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02519e" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM01127e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01127e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01127c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01127c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="2" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09006" sboTerm="SBO:0000185" id="MAR09006" name="Transport of S-Adenosyl-L-Homocysteine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09006" sboTerm="SBO:0000185" id="R_MAR09006" name="Transport of S-Adenosyl-L-Homocysteine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -416262,7 +415129,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09006">
+            <rdf:Description rdf:about="#R_MAR09006">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/AHCYSte"/>
@@ -416274,13 +415141,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02871e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02871e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02871c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02871c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09007" sboTerm="SBO:0000185" id="MAR09007" name="Transport of 5-Amino-1- (5-Phospho-D-Ribosyl)Imidazole-4-Carboxamide" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09007" sboTerm="SBO:0000185" id="R_MAR09007" name="Transport of 5-Amino-1- (5-Phospho-D-Ribosyl)Imidazole-4-Carboxamide" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -416288,7 +415155,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09007">
+            <rdf:Description rdf:about="#R_MAR09007">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.44"/>
@@ -416301,13 +415168,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01304e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01304e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01304c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01304c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09008" sboTerm="SBO:0000185" id="MAR09008" name="Transport of Anthranilate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09008" sboTerm="SBO:0000185" id="R_MAR09008" name="Transport of Anthranilate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -416315,7 +415182,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09008">
+            <rdf:Description rdf:about="#R_MAR09008">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ANTHte"/>
@@ -416327,13 +415194,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01342e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01342e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01342c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01342c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09009" sboTerm="SBO:0000185" id="MAR09009" name="Transport of N-Carbamoyl-L-Aspartate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09009" sboTerm="SBO:0000185" id="R_MAR09009" name="Transport of N-Carbamoyl-L-Aspartate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -416341,7 +415208,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09009">
+            <rdf:Description rdf:about="#R_MAR09009">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CBASPte"/>
@@ -416353,13 +415220,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02559e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02559e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02559c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02559c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09010" sboTerm="SBO:0000627" id="MAR09010" name="Exchange of 3- (4-Hydroxyphenyl)Pyruvate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09010" sboTerm="SBO:0000627" id="R_MAR09010" name="Exchange of 3- (4-Hydroxyphenyl)Pyruvate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -416367,7 +415234,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09010">
+            <rdf:Description rdf:about="#R_MAR09010">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_34hpp_e"/>
@@ -416379,10 +415246,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01005e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01005e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09011" sboTerm="SBO:0000627" id="MAR09011" name="Exchange of 3-Methyl-2-Oxobutanoate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09011" sboTerm="SBO:0000627" id="R_MAR09011" name="Exchange of 3-Methyl-2-Oxobutanoate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -416390,7 +415257,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09011">
+            <rdf:Description rdf:about="#R_MAR09011">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_3mob_e"/>
@@ -416402,10 +415269,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00824e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00824e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09012" sboTerm="SBO:0000627" id="MAR09012" name="Exchange of 3-Methyl-2-Oxopentanoate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09012" sboTerm="SBO:0000627" id="R_MAR09012" name="Exchange of 3-Methyl-2-Oxopentanoate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -416413,7 +415280,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09012">
+            <rdf:Description rdf:about="#R_MAR09012">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_3mop_e"/>
@@ -416425,10 +415292,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00669e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00669e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09013" sboTerm="SBO:0000627" id="MAR09013" name="Exchange of 4-Methyl-2-Oxopentanoate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09013" sboTerm="SBO:0000627" id="R_MAR09013" name="Exchange of 4-Methyl-2-Oxopentanoate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -416436,7 +415303,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09013">
+            <rdf:Description rdf:about="#R_MAR09013">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_4mop_e"/>
@@ -416448,10 +415315,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01013e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01013e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09021" sboTerm="SBO:0000627" id="MAR09021" name="Exchange of 5-S-Methyl-5-Thioadenosine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09021" sboTerm="SBO:0000627" id="R_MAR09021" name="Exchange of 5-S-Methyl-5-Thioadenosine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -416459,7 +415326,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09021">
+            <rdf:Description rdf:about="#R_MAR09021">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_5mta_e"/>
@@ -416471,10 +415338,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01116e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01116e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09025" sboTerm="SBO:0000627" id="MAR09025" name="Exchange of 5-Oxoprolinate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09025" sboTerm="SBO:0000627" id="R_MAR09025" name="Exchange of 5-Oxoprolinate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -416482,7 +415349,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09025">
+            <rdf:Description rdf:about="#R_MAR09025">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_5oxpro_e"/>
@@ -416494,10 +415361,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01127e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01127e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09026" sboTerm="SBO:0000627" id="MAR09026" name="Exchange of S-Adenosyl-L-Homocysteine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09026" sboTerm="SBO:0000627" id="R_MAR09026" name="Exchange of S-Adenosyl-L-Homocysteine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -416505,7 +415372,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09026">
+            <rdf:Description rdf:about="#R_MAR09026">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_ahcys_e"/>
@@ -416517,10 +415384,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02871e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02871e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09027" sboTerm="SBO:0000627" id="MAR09027" name="Exchange of 5-Amino-1- (5-Phospho-D-Ribosyl)Imidazole-4-Carboxamide" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09027" sboTerm="SBO:0000627" id="R_MAR09027" name="Exchange of 5-Amino-1- (5-Phospho-D-Ribosyl)Imidazole-4-Carboxamide" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -416528,7 +415395,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09027">
+            <rdf:Description rdf:about="#R_MAR09027">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_aicar_e"/>
@@ -416540,10 +415407,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01304e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01304e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09028" sboTerm="SBO:0000627" id="MAR09028" name="Exchange of Anthranilate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09028" sboTerm="SBO:0000627" id="R_MAR09028" name="Exchange of Anthranilate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -416551,7 +415418,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09028">
+            <rdf:Description rdf:about="#R_MAR09028">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_anth_e"/>
@@ -416563,10 +415430,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01342e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01342e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09029" sboTerm="SBO:0000627" id="MAR09029" name="Exchange of N-Carbamoyl-L-Aspartate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09029" sboTerm="SBO:0000627" id="R_MAR09029" name="Exchange of N-Carbamoyl-L-Aspartate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -416574,7 +415441,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09029">
+            <rdf:Description rdf:about="#R_MAR09029">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_cbasp_e"/>
@@ -416586,10 +415453,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02559e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02559e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09030" sboTerm="SBO:0000185" id="MAR09030" name="Transport of L-Malate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09030" sboTerm="SBO:0000185" id="R_MAR09030" name="Transport of L-Malate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -416597,7 +415464,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09030">
+            <rdf:Description rdf:about="#R_MAR09030">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/MALt"/>
@@ -416609,13 +415476,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02439e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02439e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02439c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02439c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09031" sboTerm="SBO:0000185" id="MAR09031" name="Orotate-Glutamate Antiport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09031" sboTerm="SBO:0000185" id="R_MAR09031" name="Orotate-Glutamate Antiport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -416623,7 +415490,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09031">
+            <rdf:Description rdf:about="#R_MAR09031">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.31"/>
@@ -416636,44 +415503,46 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01974c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02659e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01974c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02659e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01974e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02659c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01974e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02659c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG3168"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR09057" sboTerm="SBO:0000185" id="MAR09057" name="Transport of (R)-Pantothenate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09057" sboTerm="SBO:0000185" id="R_MAR09057" name="Transport of (R)-Pantothenate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
+            <p>AUTHORS: PMID:21749321</p>
           </body>
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09057">
+            <rdf:Description rdf:about="#R_MAR09057">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PNTOte"/>
                   <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR103051"/>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/PNTOte"/>
+                  <rdf:li rdf:resource="https://identifiers.org/vmhreaction/PNTORDe"/>
                 </rdf:Bag>
               </bqbiol:is>
             </rdf:Description>
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02680e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02680e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02680c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02680c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09059" sboTerm="SBO:0000185" id="MAR09059" name="Transport of 5-Hydroxyindoleacetate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09059" sboTerm="SBO:0000185" id="R_MAR09059" name="Transport of 5-Hydroxyindoleacetate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -416681,7 +415550,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09059">
+            <rdf:Description rdf:about="#R_MAR09059">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/5HOXINDOAtr"/>
@@ -416692,18 +415561,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02946c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01103e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02946c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01103e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01103c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02946e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01103c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02946e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Ae2"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR09060" sboTerm="SBO:0000185" id="MAR09060" name="Transport of Glyceraldehyde" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09060" sboTerm="SBO:0000185" id="R_MAR09060" name="Transport of Glyceraldehyde" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -416711,7 +415580,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09060">
+            <rdf:Description rdf:about="#R_MAR09060">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GLYALDtr"/>
@@ -416722,15 +415591,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01981e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01981e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01981c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01981c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09112" sboTerm="SBO:0000185" id="MAR09112" name="Transport of Phosphoenolpyruvate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09112" sboTerm="SBO:0000185" id="R_MAR09112" name="Transport of Phosphoenolpyruvate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -416738,7 +415607,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09112">
+            <rdf:Description rdf:about="#R_MAR09112">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.5.1.2"/>
@@ -416750,15 +415619,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02696c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02696c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02696e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02696e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09170" sboTerm="SBO:0000185" id="MAR09170" name="Transport of Guanidinoacetic Acid" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09170" sboTerm="SBO:0000185" id="R_MAR09170" name="Transport of Guanidinoacetic Acid" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -416766,7 +415635,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09170">
+            <rdf:Description rdf:about="#R_MAR09170">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GUDACtr"/>
@@ -416777,17 +415646,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01442e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02036e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01442e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02036e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01442c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02036c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01442c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02036c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="2" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09186" sboTerm="SBO:0000185" id="MAR09186" name="Transport of Guanidinoacetic Acid" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09186" sboTerm="SBO:0000185" id="R_MAR09186" name="Transport of Guanidinoacetic Acid" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -416795,7 +415664,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09186">
+            <rdf:Description rdf:about="#R_MAR09186">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GUDACtr2"/>
@@ -416806,13 +415675,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02036e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02036e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02036c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02036c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09402" sboTerm="SBO:0000185" id="MAR09402" name="Transport of L-Kynurenine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09402" sboTerm="SBO:0000185" id="R_MAR09402" name="Transport of L-Kynurenine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -416820,7 +415689,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09402">
+            <rdf:Description rdf:about="#R_MAR09402">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/LKYNRtr2"/>
@@ -416831,15 +415700,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02724c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02319e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02724c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02319e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02319c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02724e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02319c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02724e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09459" sboTerm="SBO:0000185" id="MAR09459" name="Transport of 3-Ureidopropionate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09459" sboTerm="SBO:0000185" id="R_MAR09459" name="Transport of 3-Ureidopropionate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -416847,7 +415716,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09459">
+            <rdf:Description rdf:about="#R_MAR09459">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/BALAPAT1tc2"/>
@@ -416858,17 +415727,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01442e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM00923e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01442e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM00923e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00923c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01442c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM00923c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01442c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="2" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09526" sboTerm="SBO:0000185" id="MAR09526" name="Transport of 3-Ureidopropionate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09526" sboTerm="SBO:0000185" id="R_MAR09526" name="Transport of 3-Ureidopropionate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -416876,7 +415745,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09526">
+            <rdf:Description rdf:about="#R_MAR09526">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/BALABETAtc2"/>
@@ -416887,15 +415756,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00923e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00923e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00923c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00923c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09533" sboTerm="SBO:0000185" id="MAR09533" name="Transport of 3-Ureidopropionate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09533" sboTerm="SBO:0000185" id="R_MAR09533" name="Transport of 3-Ureidopropionate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -416903,7 +415772,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09533">
+            <rdf:Description rdf:about="#R_MAR09533">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CALAtr"/>
@@ -416914,13 +415783,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00923e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00923e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00923c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00923c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09576" sboTerm="SBO:0000185" id="MAR09576" name="Transport of Kynurenic Acid" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09576" sboTerm="SBO:0000185" id="R_MAR09576" name="Transport of Kynurenic Acid" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -416928,7 +415797,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09576">
+            <rdf:Description rdf:about="#R_MAR09576">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/KYNATEtr"/>
@@ -416939,12 +415808,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01306c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00990e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01306c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00990e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00990c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01306e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00990c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01306e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -416953,7 +415822,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR09589" sboTerm="SBO:0000185" id="MAR09589" name="Transport of Kynurenic Acid" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09589" sboTerm="SBO:0000185" id="R_MAR09589" name="Transport of Kynurenic Acid" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -416961,7 +415830,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09589">
+            <rdf:Description rdf:about="#R_MAR09589">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/KYNATEtr2"/>
@@ -416972,13 +415841,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00990e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00990e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00990c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00990c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09723" sboTerm="SBO:0000185" id="MAR09723" name="Transport of 3-Hydroxyanthranilate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09723" sboTerm="SBO:0000185" id="R_MAR09723" name="Transport of 3-Hydroxyanthranilate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -416986,7 +415855,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09723">
+            <rdf:Description rdf:about="#R_MAR09723">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/3ANTHRNtr"/>
@@ -416997,13 +415866,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00775e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00775e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00775c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00775c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09736" sboTerm="SBO:0000185" id="MAR09736" name="Transport of 3-Hydroxy-L-Kynurenine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09736" sboTerm="SBO:0000185" id="R_MAR09736" name="Transport of 3-Hydroxy-L-Kynurenine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -417011,7 +415880,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09736">
+            <rdf:Description rdf:about="#R_MAR09736">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/HKYNRtr"/>
@@ -417022,15 +415891,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03089c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00788e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03089c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00788e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00788c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03089e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00788c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03089e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09819" sboTerm="SBO:0000185" id="MAR09819" name="Transport of Quinolinic Acid" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09819" sboTerm="SBO:0000185" id="R_MAR09819" name="Transport of Quinolinic Acid" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -417038,7 +415907,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09819">
+            <rdf:Description rdf:about="#R_MAR09819">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/QULNtr"/>
@@ -417049,18 +415918,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02946c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02822e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02946c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02822e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02822c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02946e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02822c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02946e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG6126"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR09820" sboTerm="SBO:0000185" id="MAR09820" name="Transport of 2-Phospho-D-Glycerate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09820" sboTerm="SBO:0000185" id="R_MAR09820" name="Transport of 2-Phospho-D-Glycerate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -417068,7 +415937,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09820">
+            <rdf:Description rdf:about="#R_MAR09820">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/2PGtr"/>
@@ -417079,13 +415948,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00674e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00674e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00674c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00674c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09821" sboTerm="SBO:0000185" id="MAR09821" name="Transport of Carnosine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09821" sboTerm="SBO:0000185" id="R_MAR09821" name="Transport of Carnosine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -417093,7 +415962,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09821">
+            <rdf:Description rdf:about="#R_MAR09821">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CARNtr"/>
@@ -417104,13 +415973,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01423e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01423e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01423c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01423c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09822" sboTerm="SBO:0000185" id="MAR09822" name="Transport of Choline Phosphate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09822" sboTerm="SBO:0000185" id="R_MAR09822" name="Transport of Choline Phosphate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -417118,7 +415987,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09822">
+            <rdf:Description rdf:about="#R_MAR09822">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CHOLPtr"/>
@@ -417129,13 +415998,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02738e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02738e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02738c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02738c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09823" sboTerm="SBO:0000185" id="MAR09823" name="Transport of Cystine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09823" sboTerm="SBO:0000185" id="R_MAR09823" name="Transport of Cystine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -417143,7 +416012,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09823">
+            <rdf:Description rdf:about="#R_MAR09823">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CYST_Ltr"/>
@@ -417154,13 +416023,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02349e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02349e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02349c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02349c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09824" sboTerm="SBO:0000185" id="MAR09824" name="Transport of dCMP" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09824" sboTerm="SBO:0000185" id="R_MAR09824" name="Transport of dCMP" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -417168,7 +416037,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09824">
+            <rdf:Description rdf:about="#R_MAR09824">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/DCMPtr"/>
@@ -417179,13 +416048,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01644e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01644e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01644c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01644c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09825" sboTerm="SBO:0000185" id="MAR09825" name="Transport of Dihydroxyacetone Phosphate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09825" sboTerm="SBO:0000185" id="R_MAR09825" name="Transport of Dihydroxyacetone Phosphate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -417193,7 +416062,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09825">
+            <rdf:Description rdf:about="#R_MAR09825">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/DHAPtr"/>
@@ -417204,13 +416073,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01690e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01690e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01690c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01690c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09826" sboTerm="SBO:0000185" id="MAR09826" name="Transport of Dimethylglycine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09826" sboTerm="SBO:0000185" id="R_MAR09826" name="Transport of Dimethylglycine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -417218,7 +416087,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09826">
+            <rdf:Description rdf:about="#R_MAR09826">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/DMGLYtr"/>
@@ -417229,13 +416098,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01708e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01708e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01708c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01708c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09827" sboTerm="SBO:0000185" id="MAR09827" name="Transport of Ethanolamine Phosphate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09827" sboTerm="SBO:0000185" id="R_MAR09827" name="Transport of Ethanolamine Phosphate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -417243,7 +416112,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09827">
+            <rdf:Description rdf:about="#R_MAR09827">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ETHAMPtr"/>
@@ -417254,13 +416123,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01798e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01798e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01798c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01798c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09828" sboTerm="SBO:0000185" id="MAR09828" name="Transport of Fumarate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09828" sboTerm="SBO:0000185" id="R_MAR09828" name="Transport of Fumarate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -417268,7 +416137,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09828">
+            <rdf:Description rdf:about="#R_MAR09828">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FUMtr"/>
@@ -417280,13 +416149,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01862e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01862e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01862c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01862c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09829" sboTerm="SBO:0000185" id="MAR09829" name="Transport of Glycerophosphocholine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09829" sboTerm="SBO:0000185" id="R_MAR09829" name="Transport of Glycerophosphocholine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -417294,7 +416163,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09829">
+            <rdf:Description rdf:about="#R_MAR09829">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/G3PCt"/>
@@ -417306,13 +416175,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02912e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02912e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02912c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02912c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09830" sboTerm="SBO:0000185" id="MAR09830" name="Transport of D-Glucuronate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09830" sboTerm="SBO:0000185" id="R_MAR09830" name="Transport of D-Glucuronate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -417320,7 +416189,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09830">
+            <rdf:Description rdf:about="#R_MAR09830">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GLCURtr"/>
@@ -417331,13 +416200,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01973e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01973e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01973c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01973c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09831" sboTerm="SBO:0000185" id="MAR09831" name="Transport of Isocitrate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09831" sboTerm="SBO:0000185" id="R_MAR09831" name="Transport of Isocitrate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -417345,7 +416214,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09831">
+            <rdf:Description rdf:about="#R_MAR09831">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ICITtr"/>
@@ -417356,13 +416225,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02183e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02183e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02183c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02183c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09832" sboTerm="SBO:0000185" id="MAR09832" name="Transport of L-2-Aminoadipate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09832" sboTerm="SBO:0000185" id="R_MAR09832" name="Transport of L-2-Aminoadipate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -417370,7 +416239,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09832">
+            <rdf:Description rdf:about="#R_MAR09832">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/L2AADPtr"/>
@@ -417381,13 +416250,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02322e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02322e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02322c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02322c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09833" sboTerm="SBO:0000185" id="MAR09833" name="Transport of Xanthine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09833" sboTerm="SBO:0000185" id="R_MAR09833" name="Transport of Xanthine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -417395,7 +416264,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09833">
+            <rdf:Description rdf:about="#R_MAR09833">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/XANt"/>
@@ -417407,13 +416276,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03148e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03148e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03148c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03148c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09834" sboTerm="SBO:0000185" id="MAR09834" name="Transport of XMP" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09834" sboTerm="SBO:0000185" id="R_MAR09834" name="Transport of XMP" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -417421,7 +416290,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09834">
+            <rdf:Description rdf:about="#R_MAR09834">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/XMPtr"/>
@@ -417432,13 +416301,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03150e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03150e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03150c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03150c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09835" sboTerm="SBO:0000185" id="MAR09835" name="Transport of Xanthosine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09835" sboTerm="SBO:0000185" id="R_MAR09835" name="Transport of Xanthosine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -417446,7 +416315,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09835">
+            <rdf:Description rdf:about="#R_MAR09835">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/XTSNtr"/>
@@ -417457,13 +416326,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03149e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03149e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03149c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03149c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09836" sboTerm="SBO:0000185" id="MAR09836" name="Transport of 3-Phospho-D-Glycerate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09836" sboTerm="SBO:0000185" id="R_MAR09836" name="Transport of 3-Phospho-D-Glycerate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -417471,7 +416340,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09836">
+            <rdf:Description rdf:about="#R_MAR09836">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/3PGtr"/>
@@ -417482,13 +416351,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00913e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00913e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00913c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00913c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09837" sboTerm="SBO:0000185" id="MAR09837" name=" Transport of UDP-Glucuronate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09837" sboTerm="SBO:0000185" id="R_MAR09837" name=" Transport of UDP-Glucuronate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -417496,7 +416365,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09837">
+            <rdf:Description rdf:about="#R_MAR09837">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/UDPGLCURtr"/>
@@ -417507,13 +416376,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03109e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03109e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03109c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03109c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09838" sboTerm="SBO:0000185" id="MAR09838" name="Transport of IMP" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09838" sboTerm="SBO:0000185" id="R_MAR09838" name="Transport of IMP" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -417521,7 +416390,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09838">
+            <rdf:Description rdf:about="#R_MAR09838">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/IMPtr"/>
@@ -417532,13 +416401,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02167e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02167e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02167c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02167c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09839" sboTerm="SBO:0000185" id="MAR09839" name="Transport of Glycerophosphoric Acid" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09839" sboTerm="SBO:0000185" id="R_MAR09839" name="Transport of Glycerophosphoric Acid" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -417546,7 +416415,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09839">
+            <rdf:Description rdf:about="#R_MAR09839">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GLYC3tr"/>
@@ -417557,13 +416426,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02914e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02914e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02914c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02914c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09840" sboTerm="SBO:0000185" id="MAR09840" name="Transport of Nicotinate D-Ribonucleotide" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09840" sboTerm="SBO:0000185" id="R_MAR09840" name="Transport of Nicotinate D-Ribonucleotide" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -417571,7 +416440,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09840">
+            <rdf:Description rdf:about="#R_MAR09840">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/NICRNtr"/>
@@ -417582,13 +416451,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02585e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02585e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02585c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02585c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09841" sboTerm="SBO:0000185" id="MAR09841" name="Transport of Orotidylic Acid" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09841" sboTerm="SBO:0000185" id="R_MAR09841" name="Transport of Orotidylic Acid" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -417596,7 +416465,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09841">
+            <rdf:Description rdf:about="#R_MAR09841">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/OROT5Ptr"/>
@@ -417607,13 +416476,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02660e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02660e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02660c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02660c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09842" sboTerm="SBO:0000627" id="MAR09842" name="Exchange of 2-Phospho-D-Glycerate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09842" sboTerm="SBO:0000627" id="R_MAR09842" name="Exchange of 2-Phospho-D-Glycerate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -417621,7 +416490,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09842">
+            <rdf:Description rdf:about="#R_MAR09842">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_2pg_e"/>
@@ -417633,10 +416502,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00674e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00674e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09843" sboTerm="SBO:0000627" id="MAR09843" name="Exchange of 5-Hydroxyindoleacetate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09843" sboTerm="SBO:0000627" id="R_MAR09843" name="Exchange of 5-Hydroxyindoleacetate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -417644,7 +416513,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09843">
+            <rdf:Description rdf:about="#R_MAR09843">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_5hoxindoa_e"/>
@@ -417655,10 +416524,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01103e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01103e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09844" sboTerm="SBO:0000627" id="MAR09844" name="Exchange of N-Carbamoyl-Beta-Alaninate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09844" sboTerm="SBO:0000627" id="R_MAR09844" name="Exchange of N-Carbamoyl-Beta-Alaninate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -417666,7 +416535,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09844">
+            <rdf:Description rdf:about="#R_MAR09844">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_cala_e"/>
@@ -417677,10 +416546,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00923e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00923e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09845" sboTerm="SBO:0000627" id="MAR09845" name="Exchange of Choline Phosphate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09845" sboTerm="SBO:0000627" id="R_MAR09845" name="Exchange of Choline Phosphate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -417688,7 +416557,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09845">
+            <rdf:Description rdf:about="#R_MAR09845">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_cholp_e"/>
@@ -417699,10 +416568,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02738e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02738e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09846" sboTerm="SBO:0000627" id="MAR09846" name="Exchange of L-Cystathionine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09846" sboTerm="SBO:0000627" id="R_MAR09846" name="Exchange of L-Cystathionine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -417710,7 +416579,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09846">
+            <rdf:Description rdf:about="#R_MAR09846">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_cyst__L_e"/>
@@ -417722,10 +416591,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02349e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02349e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09847" sboTerm="SBO:0000627" id="MAR09847" name="Exchange of Deoxycytidylic Acid" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09847" sboTerm="SBO:0000627" id="R_MAR09847" name="Exchange of Deoxycytidylic Acid" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -417733,7 +416602,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09847">
+            <rdf:Description rdf:about="#R_MAR09847">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_dcmp_e"/>
@@ -417745,10 +416614,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01644e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01644e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09848" sboTerm="SBO:0000627" id="MAR09848" name="Exchange of N,N-Dimethylglycine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09848" sboTerm="SBO:0000627" id="R_MAR09848" name="Exchange of N,N-Dimethylglycine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -417756,7 +416625,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09848">
+            <rdf:Description rdf:about="#R_MAR09848">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_dmgly_e"/>
@@ -417767,10 +416636,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01708e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01708e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09849" sboTerm="SBO:0000627" id="MAR09849" name="Exchange of Ethanolamine Phosphate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09849" sboTerm="SBO:0000627" id="R_MAR09849" name="Exchange of Ethanolamine Phosphate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -417778,7 +416647,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09849">
+            <rdf:Description rdf:about="#R_MAR09849">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_ethamp_e"/>
@@ -417789,10 +416658,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01798e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01798e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09850" sboTerm="SBO:0000627" id="MAR09850" name="Exchange of Glycerophosphocholine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09850" sboTerm="SBO:0000627" id="R_MAR09850" name="Exchange of Glycerophosphocholine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -417800,7 +416669,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09850">
+            <rdf:Description rdf:about="#R_MAR09850">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_g3pc_e"/>
@@ -417812,10 +416681,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02912e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02912e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09851" sboTerm="SBO:0000627" id="MAR09851" name="Exchange of D-Glyceraldehyde" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09851" sboTerm="SBO:0000627" id="R_MAR09851" name="Exchange of D-Glyceraldehyde" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -417823,7 +416692,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09851">
+            <rdf:Description rdf:about="#R_MAR09851">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_glyald_e"/>
@@ -417835,10 +416704,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01981e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01981e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09852" sboTerm="SBO:0000627" id="MAR09852" name="Exchange of Guanidinoacetic Acid" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09852" sboTerm="SBO:0000627" id="R_MAR09852" name="Exchange of Guanidinoacetic Acid" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -417846,7 +416715,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09852">
+            <rdf:Description rdf:about="#R_MAR09852">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_gudac_e"/>
@@ -417857,10 +416726,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02036e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02036e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09853" sboTerm="SBO:0000627" id="MAR09853" name="Exchange of L-Homocysteine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09853" sboTerm="SBO:0000627" id="R_MAR09853" name="Exchange of L-Homocysteine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -417868,7 +416737,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09853">
+            <rdf:Description rdf:about="#R_MAR09853">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_hcys__L_e"/>
@@ -417880,10 +416749,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02133e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02133e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09854" sboTerm="SBO:0000627" id="MAR09854" name="Ex_icit[e]" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09854" sboTerm="SBO:0000627" id="R_MAR09854" name="Ex_icit[e]" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -417891,7 +416760,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09854">
+            <rdf:Description rdf:about="#R_MAR09854">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_icit_e"/>
@@ -417903,10 +416772,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02183e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02183e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09855" sboTerm="SBO:0000627" id="MAR09855" name="Exchange of Kynurenic Acid" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09855" sboTerm="SBO:0000627" id="R_MAR09855" name="Exchange of Kynurenic Acid" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -417914,7 +416783,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09855">
+            <rdf:Description rdf:about="#R_MAR09855">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_kynate_e"/>
@@ -417925,10 +416794,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00990e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00990e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09856" sboTerm="SBO:0000627" id="MAR09856" name="Exchange of L-2-Aminoadipate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09856" sboTerm="SBO:0000627" id="R_MAR09856" name="Exchange of L-2-Aminoadipate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -417936,7 +416805,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09856">
+            <rdf:Description rdf:about="#R_MAR09856">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_L2aadp_e"/>
@@ -417947,10 +416816,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02322e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02322e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09857" sboTerm="SBO:0000627" id="MAR09857" name="Exchange of L-Kynurenine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09857" sboTerm="SBO:0000627" id="R_MAR09857" name="Exchange of L-Kynurenine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -417958,7 +416827,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09857">
+            <rdf:Description rdf:about="#R_MAR09857">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_Lkynr_e"/>
@@ -417969,10 +416838,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02319e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02319e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09858" sboTerm="SBO:0000627" id="MAR09858" name="Exchange of Phosphoenolpyruvate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09858" sboTerm="SBO:0000627" id="R_MAR09858" name="Exchange of Phosphoenolpyruvate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -417980,7 +416849,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09858">
+            <rdf:Description rdf:about="#R_MAR09858">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_pep_e"/>
@@ -417992,10 +416861,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02696e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02696e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09859" sboTerm="SBO:0000627" id="MAR09859" name="Exchange of Quinolinic Acid" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09859" sboTerm="SBO:0000627" id="R_MAR09859" name="Exchange of Quinolinic Acid" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -418003,7 +416872,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09859">
+            <rdf:Description rdf:about="#R_MAR09859">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_quln_e"/>
@@ -418014,10 +416883,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02822e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02822e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09860" sboTerm="SBO:0000627" id="MAR09860" name="Exchange of Xanthylic Acid" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09860" sboTerm="SBO:0000627" id="R_MAR09860" name="Exchange of Xanthylic Acid" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -418025,7 +416894,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09860">
+            <rdf:Description rdf:about="#R_MAR09860">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_xmp_e"/>
@@ -418037,10 +416906,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03150e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03150e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09861" sboTerm="SBO:0000627" id="MAR09861" name="Exchange of Xanthosine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09861" sboTerm="SBO:0000627" id="R_MAR09861" name="Exchange of Xanthosine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -418048,7 +416917,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09861">
+            <rdf:Description rdf:about="#R_MAR09861">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_xtsn_e"/>
@@ -418060,10 +416929,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03149e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03149e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09862" sboTerm="SBO:0000627" id="MAR09862" name="Exchange of 3-Phospho-D-Glycerate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09862" sboTerm="SBO:0000627" id="R_MAR09862" name="Exchange of 3-Phospho-D-Glycerate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -418071,7 +416940,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09862">
+            <rdf:Description rdf:about="#R_MAR09862">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_3pg_e"/>
@@ -418083,10 +416952,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00913e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00913e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09863" sboTerm="SBO:0000627" id="MAR09863" name="Exchange" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09863" sboTerm="SBO:0000627" id="R_MAR09863" name="Exchange" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -418094,7 +416963,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09863">
+            <rdf:Description rdf:about="#R_MAR09863">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_3hanthrn_e"/>
@@ -418105,10 +416974,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00775e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00775e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09864" sboTerm="SBO:0000627" id="MAR09864" name="Exchange" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09864" sboTerm="SBO:0000627" id="R_MAR09864" name="Exchange" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -418116,7 +416985,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09864">
+            <rdf:Description rdf:about="#R_MAR09864">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_udpglcur_e"/>
@@ -418128,10 +416997,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03109e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03109e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09865" sboTerm="SBO:0000627" id="MAR09865" name="Exchange" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09865" sboTerm="SBO:0000627" id="R_MAR09865" name="Exchange" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -418139,7 +417008,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09865">
+            <rdf:Description rdf:about="#R_MAR09865">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_hLkynr_e"/>
@@ -418150,10 +417019,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00788e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00788e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09866" sboTerm="SBO:0000627" id="MAR09866" name="Exchange" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09866" sboTerm="SBO:0000627" id="R_MAR09866" name="Exchange" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -418161,7 +417030,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09866">
+            <rdf:Description rdf:about="#R_MAR09866">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_nicrnt_e"/>
@@ -418172,10 +417041,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02585e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02585e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09867" sboTerm="SBO:0000627" id="MAR09867" name="Exchange" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09867" sboTerm="SBO:0000627" id="R_MAR09867" name="Exchange" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -418183,7 +417052,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09867">
+            <rdf:Description rdf:about="#R_MAR09867">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_orot5p_e"/>
@@ -418194,10 +417063,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02660e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02660e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09868" sboTerm="SBO:0000627" id="MAR09868" name="Exchange of Glycerophosphoric Acid" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09868" sboTerm="SBO:0000627" id="R_MAR09868" name="Exchange of Glycerophosphoric Acid" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -418205,7 +417074,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09868">
+            <rdf:Description rdf:about="#R_MAR09868">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_glyc3p_e"/>
@@ -418217,10 +417086,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02914e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02914e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09869" sboTerm="SBO:0000185" id="MAR09869" name="Alanine Transport by B0At3" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09869" sboTerm="SBO:0000185" id="R_MAR09869" name="Alanine Transport by B0At3" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -418228,7 +417097,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09869">
+            <rdf:Description rdf:about="#R_MAR09869">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ALAB0AT3tc"/>
@@ -418239,20 +417108,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01307e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01442e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01307e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01442e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01307c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01442c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01307c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01442c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG43066"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR09870" sboTerm="SBO:0000176" id="MAR09870" name="Arachidonate (N-C18:1) Transport by FATP" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09870" sboTerm="SBO:0000176" id="R_MAR09870" name="Arachidonate (N-C18:1) Transport by FATP" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -418260,7 +417129,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09870">
+            <rdf:Description rdf:about="#R_MAR09870">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ARACHDFATPtc"/>
@@ -418271,20 +417140,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01362e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01362e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01334c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01364c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01364c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Fatp2"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR09871" sboTerm="SBO:0000185" id="MAR09871" name="Arginine Transport by B0At3" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09871" sboTerm="SBO:0000185" id="R_MAR09871" name="Arginine Transport by B0At3" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -418292,7 +417161,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09871">
+            <rdf:Description rdf:about="#R_MAR09871">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ARGB0AT3tc"/>
@@ -418303,20 +417172,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01365e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01442e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01365e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01442e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01365c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01442c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01365c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01442c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG43066"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR09872" sboTerm="SBO:0000185" id="MAR09872" name="Asparagine Transport by B0At3" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09872" sboTerm="SBO:0000185" id="R_MAR09872" name="Asparagine Transport by B0At3" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -418324,7 +417193,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09872">
+            <rdf:Description rdf:about="#R_MAR09872">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ASNB0AT3tc"/>
@@ -418335,20 +417204,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01369e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01442e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01369e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01442e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01369c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01442c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01369c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01442c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG43066"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR09874" sboTerm="SBO:0000185" id="MAR09874" name="Butyrate Transport by Smct1" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09874" sboTerm="SBO:0000185" id="R_MAR09874" name="Butyrate Transport by Smct1" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -418356,7 +417225,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09874">
+            <rdf:Description rdf:about="#R_MAR09874">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/BUTSMCT1"/>
@@ -418367,18 +417236,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01410e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01410e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01410c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01410c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG10444"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR09875" sboTerm="SBO:0000185" id="MAR09875" name="Carnitine Transport by Atb0" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09875" sboTerm="SBO:0000185" id="R_MAR09875" name="Carnitine Transport by Atb0" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -418386,7 +417255,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09875">
+            <rdf:Description rdf:about="#R_MAR09875">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CRNATBtc"/>
@@ -418397,20 +417266,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01442e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01442e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="2" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01442c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01442c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="2" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="GlyT"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR09876" sboTerm="SBO:0000185" id="MAR09876" name="Cysteine Transport by B0At3" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09876" sboTerm="SBO:0000185" id="R_MAR09876" name="Cysteine Transport by B0At3" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -418418,7 +417287,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09876">
+            <rdf:Description rdf:about="#R_MAR09876">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CYSB0AT3tc"/>
@@ -418429,20 +417298,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01442e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01628e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01442e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01628e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01442c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01628c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01442c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01628c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG43066"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR09878" sboTerm="SBO:0000185" id="MAR09878" name="Dopa Transport by Ent4" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09878" sboTerm="SBO:0000185" id="R_MAR09878" name="Dopa Transport by Ent4" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -418450,7 +417319,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09878">
+            <rdf:Description rdf:about="#R_MAR09878">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/DOPAENT4tc"/>
@@ -418461,18 +417330,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01736e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01736e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01736c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01736c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Ent3"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR09879" sboTerm="SBO:0000185" id="MAR09879" name="17Beta-Estradiol 3-Glucosiduronic Acid Transport by ABCa8" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09879" sboTerm="SBO:0000185" id="R_MAR09879" name="17Beta-Estradiol 3-Glucosiduronic Acid Transport by ABCa8" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -418480,7 +417349,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09879">
+            <rdf:Description rdf:about="#R_MAR09879">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ESTRAABCtc"/>
@@ -418491,21 +417360,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01786e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01786e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01786c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01786c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Eato"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR09881" sboTerm="SBO:0000185" id="MAR09881" name="Estrone-Sulphate Transport by ABCa8" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09881" sboTerm="SBO:0000185" id="R_MAR09881" name="Estrone-Sulphate Transport by ABCa8" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -418513,7 +417382,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09881">
+            <rdf:Description rdf:about="#R_MAR09881">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ESTRSABCtc"/>
@@ -418526,21 +417395,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01789e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01789e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01789c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01789c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Eato"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR09882" sboTerm="SBO:0000185" id="MAR09882" name="Folate Transport by ABCa11" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09882" sboTerm="SBO:0000185" id="R_MAR09882" name="Folate Transport by ABCa11" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -418548,7 +417417,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09882">
+            <rdf:Description rdf:about="#R_MAR09882">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FOLABCCte"/>
@@ -418559,15 +417428,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01830c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01830c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01830e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01830e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -418579,7 +417448,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR09883" sboTerm="SBO:0000185" id="MAR09883" name="Folate Transport by Oat1" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09883" sboTerm="SBO:0000185" id="R_MAR09883" name="Folate Transport by Oat1" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -418587,7 +417456,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09883">
+            <rdf:Description rdf:about="#R_MAR09883">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FOLOAT1tc"/>
@@ -418598,20 +417467,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01306c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01830e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01306c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01830e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01306e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01830c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01306e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01830c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG6126"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR09884" sboTerm="SBO:0000185" id="MAR09884" name="Folate Transport by Oats" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09884" sboTerm="SBO:0000185" id="R_MAR09884" name="Folate Transport by Oats" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -418619,7 +417488,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09884">
+            <rdf:Description rdf:about="#R_MAR09884">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FOLOAT2tc"/>
@@ -418630,12 +417499,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01830e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02946c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01830e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02946c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01830c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02946e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01830c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02946e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -418656,7 +417525,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR09885" sboTerm="SBO:0000185" id="MAR09885" name="Folate Transport by OATP" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09885" sboTerm="SBO:0000185" id="R_MAR09885" name="Folate Transport by OATP" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -418664,7 +417533,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09885">
+            <rdf:Description rdf:about="#R_MAR09885">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FOLOATPtc"/>
@@ -418675,12 +417544,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01830e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01830e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01830c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01830c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -418692,7 +417561,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR09887" sboTerm="SBO:0000185" id="MAR09887" name="Glutamine Transport by B0At3" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09887" sboTerm="SBO:0000185" id="R_MAR09887" name="Glutamine Transport by B0At3" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -418700,7 +417569,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09887">
+            <rdf:Description rdf:about="#R_MAR09887">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GLNB0AT3tc"/>
@@ -418711,20 +417580,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01442e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01975e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01442e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01975e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01442c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01975c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01442c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01975c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG43066"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR09888" sboTerm="SBO:0000185" id="MAR09888" name="Glutamate Transport by B0At3" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09888" sboTerm="SBO:0000185" id="R_MAR09888" name="Glutamate Transport by B0At3" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -418732,7 +417601,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09888">
+            <rdf:Description rdf:about="#R_MAR09888">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GLUB0AT3tc"/>
@@ -418743,20 +417612,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01442e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01974e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01442e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01974e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01442c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01974c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01442c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01974c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG43066"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR09889" sboTerm="SBO:0000185" id="MAR09889" name="Guanosine Transport in via Proton Symport Reversible" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09889" sboTerm="SBO:0000185" id="R_MAR09889" name="Guanosine Transport in via Proton Symport Reversible" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -418764,7 +417633,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09889">
+            <rdf:Description rdf:about="#R_MAR09889">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GSNt2"/>
@@ -418778,18 +417647,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02038e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02038e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02038c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02038c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CNT1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR09890" sboTerm="SBO:0000185" id="MAR09890" name="Water And Glycerol Transport by Aqp" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09890" sboTerm="SBO:0000185" id="R_MAR09890" name="Water And Glycerol Transport by Aqp" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -418797,7 +417666,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09890">
+            <rdf:Description rdf:about="#R_MAR09890">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/H2OGLYAQPt"/>
@@ -418808,12 +417677,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01983e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01983e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01983c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01983c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -418822,7 +417691,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR09891" sboTerm="SBO:0000185" id="MAR09891" name="Iso-Leucine Transport by B0At3" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09891" sboTerm="SBO:0000185" id="R_MAR09891" name="Iso-Leucine Transport by B0At3" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -418830,7 +417699,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09891">
+            <rdf:Description rdf:about="#R_MAR09891">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ILEB0AT3tc"/>
@@ -418841,20 +417710,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01442e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02184e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01442e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02184e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01442c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02184c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01442c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02184c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG43066"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR09892" sboTerm="SBO:0000185" id="MAR09892" name="Leucine Transport by B0At3" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09892" sboTerm="SBO:0000185" id="R_MAR09892" name="Leucine Transport by B0At3" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -418862,7 +417731,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09892">
+            <rdf:Description rdf:about="#R_MAR09892">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/LEUB0AT3tc"/>
@@ -418873,20 +417742,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01442e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02360e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01442e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02360e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01442c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02360c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01442c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02360c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG43066"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR09893" sboTerm="SBO:0000185" id="MAR09893" name="Leukotriene Transport by ABCa8" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09893" sboTerm="SBO:0000185" id="R_MAR09893" name="Leukotriene Transport by ABCa8" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -418894,7 +417763,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09893">
+            <rdf:Description rdf:about="#R_MAR09893">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/LEUKABCtc"/>
@@ -418907,21 +417776,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02366e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02366e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02366c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02366c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Eato"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR09894" sboTerm="SBO:0000176" id="MAR09894" name="Lignocerate Transport by FATP" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09894" sboTerm="SBO:0000176" id="R_MAR09894" name="Lignocerate Transport by FATP" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -418929,7 +417798,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09894">
+            <rdf:Description rdf:about="#R_MAR09894">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/LGNCFATPtc"/>
@@ -418940,14 +417809,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02385e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02385e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01334c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02971c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02971c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -418956,7 +417825,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR09895" sboTerm="SBO:0000185" id="MAR09895" name="Methionine Transport by B0At3" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09895" sboTerm="SBO:0000185" id="R_MAR09895" name="Methionine Transport by B0At3" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -418964,7 +417833,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09895">
+            <rdf:Description rdf:about="#R_MAR09895">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/METB0AT3tc"/>
@@ -418975,20 +417844,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01442e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02471e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01442e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02471e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01442c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02471c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01442c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02471c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG43066"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR09896" sboTerm="SBO:0000185" id="MAR09896" name="Nicotinate Transport by Smct1" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09896" sboTerm="SBO:0000185" id="R_MAR09896" name="Nicotinate Transport by Smct1" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -418996,7 +417865,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09896">
+            <rdf:Description rdf:about="#R_MAR09896">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/NACSMCTte"/>
@@ -419007,18 +417876,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02586e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02586e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02586c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02586c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG10444"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR09897" sboTerm="SBO:0000185" id="MAR09897" name="Phosphatidylglycerol Transport by ABCa3" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09897" sboTerm="SBO:0000185" id="R_MAR09897" name="Phosphatidylglycerol Transport by ABCa3" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -419026,7 +417895,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09897">
+            <rdf:Description rdf:about="#R_MAR09897">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PGLYCABCte"/>
@@ -419037,21 +417906,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02715c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02715c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02715e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02715e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Abca3"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR09898" sboTerm="SBO:0000185" id="MAR09898" name="Phenylalanine Transport by B0At3" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09898" sboTerm="SBO:0000185" id="R_MAR09898" name="Phenylalanine Transport by B0At3" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -419059,7 +417928,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09898">
+            <rdf:Description rdf:about="#R_MAR09898">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PHEB0AT3tc"/>
@@ -419070,20 +417939,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01442e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02724e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01442e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02724e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01442c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02724c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01442c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02724c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG43066"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR09899" sboTerm="SBO:0000185" id="MAR09899" name="Heme Transport by ABCg2" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09899" sboTerm="SBO:0000185" id="R_MAR09899" name="Heme Transport by ABCg2" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -419091,7 +417960,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09899">
+            <rdf:Description rdf:about="#R_MAR09899">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PHEMEABCte"/>
@@ -419102,21 +417971,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02049c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02049c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02049e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02049e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="w"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR09900" sboTerm="SBO:0000185" id="MAR09900" name="Propionate Transport by Smct1" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09900" sboTerm="SBO:0000185" id="R_MAR09900" name="Propionate Transport by Smct1" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -419124,7 +417993,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09900">
+            <rdf:Description rdf:about="#R_MAR09900">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PPASMCT1"/>
@@ -419135,18 +418004,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02772e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02772e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02772c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02772c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG10444"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR09902" sboTerm="SBO:0000185" id="MAR09902" name="Pyruvate Transport by Smct1" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09902" sboTerm="SBO:0000185" id="R_MAR09902" name="Pyruvate Transport by Smct1" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -419154,7 +418023,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09902">
+            <rdf:Description rdf:about="#R_MAR09902">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PYRSMCT1"/>
@@ -419165,18 +418034,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02819e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02819e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02819c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02819c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG10444"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR09903" sboTerm="SBO:0000185" id="MAR09903" name="Vitamin Transport by ABCa4" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09903" sboTerm="SBO:0000185" id="R_MAR09903" name="Vitamin Transport by ABCa4" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -419184,7 +418053,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09903">
+            <rdf:Description rdf:about="#R_MAR09903">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/RETABCtc"/>
@@ -419195,21 +418064,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02832e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02832e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02832c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02832c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Eato"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR09904" sboTerm="SBO:0000185" id="MAR09904" name="Serine Transport by B0At3" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09904" sboTerm="SBO:0000185" id="R_MAR09904" name="Serine Transport by B0At3" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -419217,7 +418086,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09904">
+            <rdf:Description rdf:about="#R_MAR09904">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/SERB0AT3tc"/>
@@ -419228,20 +418097,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01442e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02896e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01442e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02896e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01442c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02896c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01442c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02896c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG43066"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR09905" sboTerm="SBO:0000185" id="MAR09905" name="Serotonin Transport by Ent4" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09905" sboTerm="SBO:0000185" id="R_MAR09905" name="Serotonin Transport by Ent4" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -419249,7 +418118,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09905">
+            <rdf:Description rdf:about="#R_MAR09905">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/SRTNENT4tc"/>
@@ -419260,18 +418129,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02897e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02897e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02897c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02897c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Ent3"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR09906" sboTerm="SBO:0000185" id="MAR09906" name="Bile Acid Transport by ABCa8" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09906" sboTerm="SBO:0000185" id="R_MAR09906" name="Bile Acid Transport by ABCa8" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -419279,7 +418148,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09906">
+            <rdf:Description rdf:about="#R_MAR09906">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/TCHOLABCtc"/>
@@ -419292,21 +418161,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02963e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02963e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02963c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02963c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Eato"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR09907" sboTerm="SBO:0000185" id="MAR09907" name="Tyrptophan Transport by B0At3" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09907" sboTerm="SBO:0000185" id="R_MAR09907" name="Tyrptophan Transport by B0At3" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -419314,7 +418183,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09907">
+            <rdf:Description rdf:about="#R_MAR09907">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/TRPB0AT3tc"/>
@@ -419325,20 +418194,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01442e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03089e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01442e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03089e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01442c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03089c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01442c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03089c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG43066"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR09908" sboTerm="SBO:0000185" id="MAR09908" name="Tyrosine Transport by B0At3" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09908" sboTerm="SBO:0000185" id="R_MAR09908" name="Tyrosine Transport by B0At3" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -419346,7 +418215,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09908">
+            <rdf:Description rdf:about="#R_MAR09908">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/TYRB0AT3tc"/>
@@ -419357,20 +418226,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01442e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03101e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01442e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03101e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01442c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03101c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01442c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03101c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG43066"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR09909" sboTerm="SBO:0000185" id="MAR09909" name="Valine Transport by B0At3" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09909" sboTerm="SBO:0000185" id="R_MAR09909" name="Valine Transport by B0At3" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -419378,7 +418247,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09909">
+            <rdf:Description rdf:about="#R_MAR09909">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/VALB0AT3tc"/>
@@ -419389,20 +418258,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01442e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03135e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01442e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03135e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01442c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03135c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01442c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03135c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG43066"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR09910" sboTerm="SBO:0000185" id="MAR09910" name="Secretion of Riboflavin" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09910" sboTerm="SBO:0000185" id="R_MAR09910" name="Secretion of Riboflavin" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -419412,7 +418281,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09910">
+            <rdf:Description rdf:about="#R_MAR09910">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/RIBFLVt3o"/>
@@ -419426,21 +418295,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02842c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02842c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02842e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02842e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Rift"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR09911" sboTerm="SBO:0000185" id="MAR09911" name="Transport of L-Arginosuccinic Acid" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09911" sboTerm="SBO:0000185" id="R_MAR09911" name="Transport of L-Arginosuccinic Acid" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -419448,7 +418317,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09911">
+            <rdf:Description rdf:about="#R_MAR09911">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ARGSUCte"/>
@@ -419459,13 +418328,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01366c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01366c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01366e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01366e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09912" sboTerm="SBO:0000185" id="MAR09912" name="Transport of O-Acetylcarnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09912" sboTerm="SBO:0000185" id="R_MAR09912" name="Transport of O-Acetylcarnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -419473,7 +418342,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09912">
+            <rdf:Description rdf:about="#R_MAR09912">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ACRNte"/>
@@ -419484,18 +418353,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02634c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02634c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02634e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02634e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Orct"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR09913" sboTerm="SBO:0000185" id="MAR09913" name="Transport of O-Propanoylcarnitine" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09913" sboTerm="SBO:0000185" id="R_MAR09913" name="Transport of O-Propanoylcarnitine" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -419503,7 +418372,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09913">
+            <rdf:Description rdf:about="#R_MAR09913">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PCRNte"/>
@@ -419514,18 +418383,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02657c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02657c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02657e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02657e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Orct"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR09914" sboTerm="SBO:0000185" id="MAR09914" name="Transport of 6Z,9Z-Octadecadienoylcarnitine" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09914" sboTerm="SBO:0000185" id="R_MAR09914" name="Transport of 6Z,9Z-Octadecadienoylcarnitine" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -419533,7 +418402,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09914">
+            <rdf:Description rdf:about="#R_MAR09914">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/LNELDCCRNte"/>
@@ -419544,18 +418413,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00105c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00105c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00105e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00105e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Orct"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR09915" sboTerm="SBO:0000185" id="MAR09915" name="Transport of L-Oleoylcarnitine" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09915" sboTerm="SBO:0000185" id="R_MAR09915" name="Transport of L-Oleoylcarnitine" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -419563,7 +418432,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09915">
+            <rdf:Description rdf:about="#R_MAR09915">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ODECRNte"/>
@@ -419574,18 +418443,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02639c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02639c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02639e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02639e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Orct"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR09916" sboTerm="SBO:0000185" id="MAR09916" name="Transport of O-Octadecanoyl-R-Carnitine" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09916" sboTerm="SBO:0000185" id="R_MAR09916" name="Transport of O-Octadecanoyl-R-Carnitine" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -419593,7 +418462,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09916">
+            <rdf:Description rdf:about="#R_MAR09916">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/STCRNte"/>
@@ -419604,18 +418473,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02940c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02940c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02940e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02940e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Orct"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR09917" sboTerm="SBO:0000185" id="MAR09917" name="Transport of L-Palmitoylcarnitine" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09917" sboTerm="SBO:0000185" id="R_MAR09917" name="Transport of L-Palmitoylcarnitine" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -419623,7 +418492,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09917">
+            <rdf:Description rdf:about="#R_MAR09917">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PMTCRNte"/>
@@ -419634,18 +418503,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02411c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02411c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02411e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02411e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Orct"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR09918" sboTerm="SBO:0000185" id="MAR09918" name="Transport of Palmitoleoyl-Carnitine" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09918" sboTerm="SBO:0000185" id="R_MAR09918" name="Transport of Palmitoleoyl-Carnitine" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -419653,7 +418522,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09918">
+            <rdf:Description rdf:about="#R_MAR09918">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/HDCECRNte"/>
@@ -419664,18 +418533,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02676c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02676c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02676e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02676e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Orct"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR09919" sboTerm="SBO:0000627" id="MAR09919" name="Exchange of L-Arginosuccinic Acid" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09919" sboTerm="SBO:0000627" id="R_MAR09919" name="Exchange of L-Arginosuccinic Acid" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -419683,7 +418552,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09919">
+            <rdf:Description rdf:about="#R_MAR09919">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_argsuc_e"/>
@@ -419694,10 +418563,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01366e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01366e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09920" sboTerm="SBO:0000627" id="MAR09920" name="Exchange of O-Acetylcarnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09920" sboTerm="SBO:0000627" id="R_MAR09920" name="Exchange of O-Acetylcarnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -419705,7 +418574,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09920">
+            <rdf:Description rdf:about="#R_MAR09920">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_acrn_e"/>
@@ -419716,10 +418585,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02634e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02634e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09921" sboTerm="SBO:0000627" id="MAR09921" name="Exchange of O-Propanoylcarnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09921" sboTerm="SBO:0000627" id="R_MAR09921" name="Exchange of O-Propanoylcarnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -419727,7 +418596,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09921">
+            <rdf:Description rdf:about="#R_MAR09921">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_pcrn_e"/>
@@ -419738,10 +418607,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02657e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02657e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09922" sboTerm="SBO:0000627" id="MAR09922" name="Exchange of 6Z,9Z-Octadecadienoylcarnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09922" sboTerm="SBO:0000627" id="R_MAR09922" name="Exchange of 6Z,9Z-Octadecadienoylcarnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -419749,7 +418618,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09922">
+            <rdf:Description rdf:about="#R_MAR09922">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_lneldccrn_e"/>
@@ -419760,10 +418629,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00105e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00105e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09923" sboTerm="SBO:0000627" id="MAR09923" name="Exchange of L-Oleoylcarnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09923" sboTerm="SBO:0000627" id="R_MAR09923" name="Exchange of L-Oleoylcarnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -419771,7 +418640,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09923">
+            <rdf:Description rdf:about="#R_MAR09923">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_odecrn_e"/>
@@ -419782,10 +418651,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02639e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02639e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09924" sboTerm="SBO:0000627" id="MAR09924" name="Exchange of O-Octadecanoyl-R-Carnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09924" sboTerm="SBO:0000627" id="R_MAR09924" name="Exchange of O-Octadecanoyl-R-Carnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -419793,7 +418662,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09924">
+            <rdf:Description rdf:about="#R_MAR09924">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_stcrn_e"/>
@@ -419804,10 +418673,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02940e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02940e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09925" sboTerm="SBO:0000627" id="MAR09925" name="Exchange of L-Palmitoylcarnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09925" sboTerm="SBO:0000627" id="R_MAR09925" name="Exchange of L-Palmitoylcarnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -419815,7 +418684,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09925">
+            <rdf:Description rdf:about="#R_MAR09925">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_pmtcrn_e"/>
@@ -419826,10 +418695,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02411e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02411e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09926" sboTerm="SBO:0000627" id="MAR09926" name="Exchange of Palmitoleoyl-Carnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09926" sboTerm="SBO:0000627" id="R_MAR09926" name="Exchange of Palmitoleoyl-Carnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -419837,7 +418706,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09926">
+            <rdf:Description rdf:about="#R_MAR09926">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_hdcecrn_e"/>
@@ -419848,10 +418717,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02676e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02676e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09927" sboTerm="SBO:0000185" id="MAR09927" name="Transport of Creatine Phosphate, Extracellular (Assumed Diffusion)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09927" sboTerm="SBO:0000185" id="R_MAR09927" name="Transport of Creatine Phosphate, Extracellular (Assumed Diffusion)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -419859,7 +418728,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09927">
+            <rdf:Description rdf:about="#R_MAR09927">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PCREATte"/>
@@ -419870,13 +418739,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01620c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01620c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01620e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01620e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09928" sboTerm="SBO:0000185" id="MAR09928" name="Transport of Cis-Aconitate, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09928" sboTerm="SBO:0000185" id="R_MAR09928" name="Transport of Cis-Aconitate, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -419884,7 +418753,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09928">
+            <rdf:Description rdf:about="#R_MAR09928">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/HC00342te"/>
@@ -419895,15 +418764,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01580c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM01580c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="3" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02519e" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM01580e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM01580e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09929" sboTerm="SBO:0000185" id="MAR09929" name="Transport of Azelaic Acid (C08261, Azelate), Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09929" sboTerm="SBO:0000185" id="R_MAR09929" name="Transport of Azelaic Acid (C08261, Azelate), Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -419911,7 +418780,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09929">
+            <rdf:Description rdf:about="#R_MAR09929">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/C08261te"/>
@@ -419921,13 +418790,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01372c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01372c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01372e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01372e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09930" sboTerm="SBO:0000185" id="MAR09930" name="Transport of Hippurate (Benzoylglycine), Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09930" sboTerm="SBO:0000185" id="R_MAR09930" name="Transport of Hippurate (Benzoylglycine), Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -419935,7 +418804,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09930">
+            <rdf:Description rdf:about="#R_MAR09930">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/BGLYte"/>
@@ -419946,13 +418815,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02123c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02123c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02123e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02123e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09931" sboTerm="SBO:0000629" id="MAR09931" name="Biomass maintenance reaction without replication precursors" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB2N0">
+      <reaction metaid="R_MAR09931" sboTerm="SBO:0000629" id="R_MAR09931" name="Biomass maintenance reaction without replication precursors" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB2N0">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -419960,7 +418829,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#meta_MAR09931">
+            <rdf:Description rdf:about="#meta_R_MAR09931">
               <bqbiol:is>
                 <rdf:Bag/>
               </bqbiol:is>
@@ -419968,49 +418837,49 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01307c" stoichiometry="0.50563" constant="true"/>
-          <speciesReference species="MAM01365c" stoichiometry="0.35926" constant="true"/>
-          <speciesReference species="MAM01369c" stoichiometry="0.27942" constant="true"/>
-          <speciesReference species="MAM01370c" stoichiometry="0.35261" constant="true"/>
-          <speciesReference species="MAM01371c" stoichiometry="20.7045" constant="true"/>
-          <speciesReference species="MAM01450c" stoichiometry="0.020401" constant="true"/>
-          <speciesReference species="MAM01589c" stoichiometry="0.011658" constant="true"/>
-          <speciesReference species="MAM01623c" stoichiometry="0.039036" constant="true"/>
-          <speciesReference species="MAM01628c" stoichiometry="0.046571" constant="true"/>
-          <speciesReference species="MAM01968c" stoichiometry="0.27519" constant="true"/>
-          <speciesReference species="MAM01974c" stoichiometry="0.38587" constant="true"/>
-          <speciesReference species="MAM01975c" stoichiometry="0.326" constant="true"/>
-          <speciesReference species="MAM01986c" stoichiometry="0.53889" constant="true"/>
-          <speciesReference species="MAM02034c" stoichiometry="0.036117" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="20.6508" constant="true"/>
-          <speciesReference species="MAM02125c" stoichiometry="0.12641" constant="true"/>
-          <speciesReference species="MAM02184c" stoichiometry="0.28608" constant="true"/>
-          <speciesReference species="MAM02360c" stoichiometry="0.54554" constant="true"/>
-          <speciesReference species="MAM02426c" stoichiometry="0.59211" constant="true"/>
-          <speciesReference species="MAM02471c" stoichiometry="0.15302" constant="true"/>
-          <speciesReference species="MAM02684c" stoichiometry="0.15446" constant="true"/>
-          <speciesReference species="MAM02685c" stoichiometry="0.055374" constant="true"/>
-          <speciesReference species="MAM02724c" stoichiometry="0.25947" constant="true"/>
-          <speciesReference species="MAM02750c" stoichiometry="0.023315" constant="true"/>
-          <speciesReference species="MAM02770c" stoichiometry="0.41248" constant="true"/>
-          <speciesReference species="MAM02808c" stoichiometry="0.005829" constant="true"/>
-          <speciesReference species="MAM02896c" stoichiometry="0.39253" constant="true"/>
-          <speciesReference species="MAM02908c" stoichiometry="0.017486" constant="true"/>
-          <speciesReference species="MAM02993c" stoichiometry="0.31269" constant="true"/>
-          <speciesReference species="MAM03089c" stoichiometry="0.013306" constant="true"/>
-          <speciesReference species="MAM03101c" stoichiometry="0.15967" constant="true"/>
-          <speciesReference species="MAM03130c" stoichiometry="0.053446" constant="true"/>
-          <speciesReference species="MAM03135c" stoichiometry="0.35261" constant="true"/>
-          <speciesReference species="MAM02715c" stoichiometry="0.002914" constant="true"/>
+          <speciesReference species="M_MAM01307c" stoichiometry="0.50563" constant="true"/>
+          <speciesReference species="M_MAM01365c" stoichiometry="0.35926" constant="true"/>
+          <speciesReference species="M_MAM01369c" stoichiometry="0.27942" constant="true"/>
+          <speciesReference species="M_MAM01370c" stoichiometry="0.35261" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="20.7045" constant="true"/>
+          <speciesReference species="M_MAM01450c" stoichiometry="0.020401" constant="true"/>
+          <speciesReference species="M_MAM01589c" stoichiometry="0.011658" constant="true"/>
+          <speciesReference species="M_MAM01623c" stoichiometry="0.039036" constant="true"/>
+          <speciesReference species="M_MAM01628c" stoichiometry="0.046571" constant="true"/>
+          <speciesReference species="M_MAM01968c" stoichiometry="0.27519" constant="true"/>
+          <speciesReference species="M_MAM01974c" stoichiometry="0.38587" constant="true"/>
+          <speciesReference species="M_MAM01975c" stoichiometry="0.326" constant="true"/>
+          <speciesReference species="M_MAM01986c" stoichiometry="0.53889" constant="true"/>
+          <speciesReference species="M_MAM02034c" stoichiometry="0.036117" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="20.6508" constant="true"/>
+          <speciesReference species="M_MAM02125c" stoichiometry="0.12641" constant="true"/>
+          <speciesReference species="M_MAM02184c" stoichiometry="0.28608" constant="true"/>
+          <speciesReference species="M_MAM02360c" stoichiometry="0.54554" constant="true"/>
+          <speciesReference species="M_MAM02426c" stoichiometry="0.59211" constant="true"/>
+          <speciesReference species="M_MAM02471c" stoichiometry="0.15302" constant="true"/>
+          <speciesReference species="M_MAM02684c" stoichiometry="0.15446" constant="true"/>
+          <speciesReference species="M_MAM02685c" stoichiometry="0.055374" constant="true"/>
+          <speciesReference species="M_MAM02724c" stoichiometry="0.25947" constant="true"/>
+          <speciesReference species="M_MAM02750c" stoichiometry="0.023315" constant="true"/>
+          <speciesReference species="M_MAM02770c" stoichiometry="0.41248" constant="true"/>
+          <speciesReference species="M_MAM02808c" stoichiometry="0.005829" constant="true"/>
+          <speciesReference species="M_MAM02896c" stoichiometry="0.39253" constant="true"/>
+          <speciesReference species="M_MAM02908c" stoichiometry="0.017486" constant="true"/>
+          <speciesReference species="M_MAM02993c" stoichiometry="0.31269" constant="true"/>
+          <speciesReference species="M_MAM03089c" stoichiometry="0.013306" constant="true"/>
+          <speciesReference species="M_MAM03101c" stoichiometry="0.15967" constant="true"/>
+          <speciesReference species="M_MAM03130c" stoichiometry="0.053446" constant="true"/>
+          <speciesReference species="M_MAM03135c" stoichiometry="0.35261" constant="true"/>
+          <speciesReference species="M_MAM02715c" stoichiometry="0.002914" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="20.6508" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="20.6508" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="20.6508" constant="true"/>
-          <speciesReference species="MAM03970c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="20.6508" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="20.6508" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="20.6508" constant="true"/>
+          <speciesReference species="M_MAM03970c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09932" sboTerm="SBO:0000629" id="MAR09932" name="Biomass maintenance reaction without replication, transcription, and translation precursors" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB2N0">
+      <reaction metaid="R_MAR09932" sboTerm="SBO:0000629" id="R_MAR09932" name="Biomass maintenance reaction without replication, transcription, and translation precursors" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB2N0">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -420018,7 +418887,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#meta_MAR09932">
+            <rdf:Description rdf:about="#meta_R_MAR09932">
               <bqbiol:is>
                 <rdf:Bag/>
               </bqbiol:is>
@@ -420026,26 +418895,26 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="20.7045" constant="true"/>
-          <speciesReference species="MAM01450c" stoichiometry="0.020401" constant="true"/>
-          <speciesReference species="MAM01589c" stoichiometry="0.011658" constant="true"/>
-          <speciesReference species="MAM01968c" stoichiometry="0.27519" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="20.6508" constant="true"/>
-          <speciesReference species="MAM02684c" stoichiometry="0.15446" constant="true"/>
-          <speciesReference species="MAM02685c" stoichiometry="0.055374" constant="true"/>
-          <speciesReference species="MAM02750c" stoichiometry="0.023315" constant="true"/>
-          <speciesReference species="MAM02808c" stoichiometry="0.005829" constant="true"/>
-          <speciesReference species="MAM02908c" stoichiometry="0.017486" constant="true"/>
-          <speciesReference species="MAM02715c" stoichiometry="0.002914" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="20.7045" constant="true"/>
+          <speciesReference species="M_MAM01450c" stoichiometry="0.020401" constant="true"/>
+          <speciesReference species="M_MAM01589c" stoichiometry="0.011658" constant="true"/>
+          <speciesReference species="M_MAM01968c" stoichiometry="0.27519" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="20.6508" constant="true"/>
+          <speciesReference species="M_MAM02684c" stoichiometry="0.15446" constant="true"/>
+          <speciesReference species="M_MAM02685c" stoichiometry="0.055374" constant="true"/>
+          <speciesReference species="M_MAM02750c" stoichiometry="0.023315" constant="true"/>
+          <speciesReference species="M_MAM02808c" stoichiometry="0.005829" constant="true"/>
+          <speciesReference species="M_MAM02908c" stoichiometry="0.017486" constant="true"/>
+          <speciesReference species="M_MAM02715c" stoichiometry="0.002914" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="20.6508" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="20.6508" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="20.6508" constant="true"/>
-          <speciesReference species="MAM03970c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="20.6508" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="20.6508" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="20.6508" constant="true"/>
+          <speciesReference species="M_MAM03970c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09933" sboTerm="SBO:0000176" id="MAR09933" name="Acyl-DHAP Reductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09933" sboTerm="SBO:0000176" id="R_MAR09933" name="Acyl-DHAP Reductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -420054,7 +418923,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09933">
+            <rdf:Description rdf:about="#R_MAR09933">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.101"/>
@@ -420065,16 +418934,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01278x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01278x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02554x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03419x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03419x" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09934" sboTerm="SBO:0000176" id="MAR09934" name="Formation of 15-Keto-Prostaglandin F2A" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09934" sboTerm="SBO:0000176" id="R_MAR09934" name="Formation of 15-Keto-Prostaglandin F2A" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -420083,7 +418952,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09934">
+            <rdf:Description rdf:about="#R_MAR09934">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.141"/>
@@ -420096,13 +418965,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02552c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02789c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02789c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01892c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01892c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -420111,7 +418980,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR09935" sboTerm="SBO:0000176" id="MAR09935" name="Hydroxylation of 2-Oxoadipate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09935" sboTerm="SBO:0000176" id="R_MAR09935" name="Hydroxylation of 2-Oxoadipate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -420120,7 +418989,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09935">
+            <rdf:Description rdf:about="#R_MAR09935">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.172"/>
@@ -420132,16 +419001,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00670c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00670c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02552c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03410c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03410c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09936" sboTerm="SBO:0000176" id="MAR09936" name="Formation of Phenyl-Lactate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09936" sboTerm="SBO:0000176" id="R_MAR09936" name="Formation of Phenyl-Lactate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -420149,7 +419018,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09936">
+            <rdf:Description rdf:about="#R_MAR09936">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.28"/>
@@ -420161,16 +419030,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02552c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03882c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03882c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02725c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02725c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09937" sboTerm="SBO:0000176" id="MAR09937" name="Hydroxylation of Androst-4-Ene-3, 17-Dione" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09937" sboTerm="SBO:0000176" id="R_MAR09937" name="Hydroxylation of Androst-4-Ene-3, 17-Dione" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -420179,7 +419048,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09937">
+            <rdf:Description rdf:about="#R_MAR09937">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.14.1"/>
@@ -420191,21 +419060,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00971c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00971c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03433c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03433c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Cyp18a1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR09938" sboTerm="SBO:0000176" id="MAR09938" name="Desaturation of Myristic Acid to 9-Tetradecenoic Acid" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09938" sboTerm="SBO:0000176" id="R_MAR09938" name="Desaturation of Myristic Acid to 9-Tetradecenoic Acid" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -420213,7 +419082,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09938">
+            <rdf:Description rdf:about="#R_MAR09938">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.19.1"/>
@@ -420225,18 +419094,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02495c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02495c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02552c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM04040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02552c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04040c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09939" sboTerm="SBO:0000176" id="MAR09939" name="Formation of Methyl-Histidine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09939" sboTerm="SBO:0000176" id="R_MAR09939" name="Formation of Methyl-Histidine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -420245,7 +419114,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09939">
+            <rdf:Description rdf:about="#R_MAR09939">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.1.1.-"/>
@@ -420257,16 +419126,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02125c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02877c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02125c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02877c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02871c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03247c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02871c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03247c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09940" sboTerm="SBO:0000176" id="MAR09940" name="Formation of Homocitrulline" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09940" sboTerm="SBO:0000176" id="R_MAR09940" name="Formation of Homocitrulline" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -420275,7 +419144,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09940">
+            <rdf:Description rdf:about="#R_MAR09940">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.1.3.8"/>
@@ -420287,16 +419156,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01420c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02426c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01420c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02426c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03681c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03681c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09941" sboTerm="SBO:0000176" id="MAR09941" name="Glycine N-Acyltransferase, Phenylacetate" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09941" sboTerm="SBO:0000176" id="R_MAR09941" name="Glycine N-Acyltransferase, Phenylacetate" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -420304,7 +419173,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09941">
+            <rdf:Description rdf:about="#R_MAR09941">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.13"/>
@@ -420316,16 +419185,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01986c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02721c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02721c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03862c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03862c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09942" sboTerm="SBO:0000176" id="MAR09942" name="Hydrolysis of 1-Gamma-Linolenoyl-Cholesterol, Cholesterol-Ester (18:3, Delta 6, 9, 12)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09942" sboTerm="SBO:0000176" id="R_MAR09942" name="Hydrolysis of 1-Gamma-Linolenoyl-Cholesterol, Cholesterol-Ester (18:3, Delta 6, 9, 12)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -420334,7 +419203,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09942">
+            <rdf:Description rdf:about="#R_MAR09942">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.13"/>
@@ -420346,13 +419215,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM04077l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04077l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01450l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01932l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01932l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -420364,7 +419233,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR09943" sboTerm="SBO:0000176" id="MAR09943" name="Hydrolysis of 1-Linoleoyl-Cholesterol, Cholesterol-Ester (18:2, Delta 9, 12)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09943" sboTerm="SBO:0000176" id="R_MAR09943" name="Hydrolysis of 1-Linoleoyl-Cholesterol, Cholesterol-Ester (18:2, Delta 9, 12)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -420373,7 +419242,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09943">
+            <rdf:Description rdf:about="#R_MAR09943">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.13"/>
@@ -420385,13 +419254,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM04076l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04076l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01450l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02387l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02387l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -420403,7 +419272,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR09944" sboTerm="SBO:0000176" id="MAR09944" name="Hydrolysis of 1-Vaccenoyl-Cholesterol, Cholesterol-Ester (18:1, Delta 11)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09944" sboTerm="SBO:0000176" id="R_MAR09944" name="Hydrolysis of 1-Vaccenoyl-Cholesterol, Cholesterol-Ester (18:1, Delta 11)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -420412,7 +419281,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09944">
+            <rdf:Description rdf:about="#R_MAR09944">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.13"/>
@@ -420423,13 +419292,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM04075l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04075l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01450l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01585l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01585l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -420441,7 +419310,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR09945" sboTerm="SBO:0000176" id="MAR09945" name="Hydrolysis of 1-Timnodnoyl-Cholesterol, Cholesterol-Ester (20:5, Delta 5, 8, 11, 14, 17)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09945" sboTerm="SBO:0000176" id="R_MAR09945" name="Hydrolysis of 1-Timnodnoyl-Cholesterol, Cholesterol-Ester (20:5, Delta 5, 8, 11, 14, 17)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -420450,7 +419319,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09945">
+            <rdf:Description rdf:about="#R_MAR09945">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.13"/>
@@ -420462,13 +419331,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM04079l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04079l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01450l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01784l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01784l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -420480,7 +419349,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR09946" sboTerm="SBO:0000176" id="MAR09946" name="Hydrolysis of Cholesteryl Arachidonate, Cholesterol-Ester (20:4, Delta 5, 8, 11, 14)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09946" sboTerm="SBO:0000176" id="R_MAR09946" name="Hydrolysis of Cholesteryl Arachidonate, Cholesterol-Ester (20:4, Delta 5, 8, 11, 14)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -420489,7 +419358,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09946">
+            <rdf:Description rdf:about="#R_MAR09946">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.13"/>
@@ -420500,13 +419369,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM04078l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04078l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01362l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01450l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01362l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -420518,7 +419387,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR09947" sboTerm="SBO:0000176" id="MAR09947" name="Hydrolysis of Cholesteryl Docosahexanoate, Cholesterol-Ester (22:6, Delta 4, 7, 10, 13, 16, 19)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09947" sboTerm="SBO:0000176" id="R_MAR09947" name="Hydrolysis of Cholesteryl Docosahexanoate, Cholesterol-Ester (22:6, Delta 4, 7, 10, 13, 16, 19)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -420527,7 +419396,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09947">
+            <rdf:Description rdf:about="#R_MAR09947">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.13"/>
@@ -420539,13 +419408,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM04080l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04080l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01450l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01689l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01689l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -420557,7 +419426,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR09948" sboTerm="SBO:0000176" id="MAR09948" name="Acylcoa Hydrolase, Cis, Cis-11, 14-Eicosadienoyl Coenzyme A" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09948" sboTerm="SBO:0000176" id="R_MAR09948" name="Acylcoa Hydrolase, Cis, Cis-11, 14-Eicosadienoyl Coenzyme A" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -420565,7 +419434,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09948">
+            <rdf:Description rdf:about="#R_MAR09948">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.2.2"/>
@@ -420577,16 +419446,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00009c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00009c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03569c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03569c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09949" sboTerm="SBO:0000176" id="MAR09949" name="Acylcoa Hydrolase, Cytosolic" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09949" sboTerm="SBO:0000176" id="R_MAR09949" name="Acylcoa Hydrolase, Cytosolic" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -420594,7 +419463,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09949">
+            <rdf:Description rdf:about="#R_MAR09949">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.2.2"/>
@@ -420607,16 +419476,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02122c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02122c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03684c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03684c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09950" sboTerm="SBO:0000176" id="MAR09950" name="Hydrolysis of Tetradecadienoyl Coenzyme A to Cis-5, 8-Tetradecadienoic Acid" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09950" sboTerm="SBO:0000176" id="R_MAR09950" name="Hydrolysis of Tetradecadienoyl Coenzyme A to Cis-5, 8-Tetradecadienoic Acid" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -420624,7 +419493,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09950">
+            <rdf:Description rdf:about="#R_MAR09950">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.2.2"/>
@@ -420636,16 +419505,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03974c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03974c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03976c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03976c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09951" sboTerm="SBO:0000176" id="MAR09951" name="Glycerophosphocholine Phosphodiesterase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09951" sboTerm="SBO:0000176" id="R_MAR09951" name="Glycerophosphocholine Phosphodiesterase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -420654,7 +419523,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09951">
+            <rdf:Description rdf:about="#R_MAR09951">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.4.2"/>
@@ -420666,19 +419535,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02912c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02912c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01513c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03619c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01513c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03619c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG2818"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR09952" sboTerm="SBO:0000176" id="MAR09952" name="Hydrolysis of Acetyl-Lysine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09952" sboTerm="SBO:0000176" id="R_MAR09952" name="Hydrolysis of Acetyl-Lysine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -420687,7 +419556,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09952">
+            <rdf:Description rdf:about="#R_MAR09952">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.5.1.17"/>
@@ -420699,15 +419568,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03401c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03401c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01252c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02426c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01252c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02426c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09953" sboTerm="SBO:0000176" id="MAR09953" name="Methionine Transaminase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09953" sboTerm="SBO:0000176" id="R_MAR09953" name="Methionine Transaminase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -420716,7 +419585,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09953">
+            <rdf:Description rdf:about="#R_MAR09953">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.3"/>
@@ -420728,15 +419597,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02471c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02819c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02471c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02819c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01307c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03276c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01307c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03276c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09954" sboTerm="SBO:0000176" id="MAR09954" name="Methionine Decarboxylase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09954" sboTerm="SBO:0000176" id="R_MAR09954" name="Methionine Decarboxylase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -420745,7 +419614,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09954">
+            <rdf:Description rdf:about="#R_MAR09954">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.3"/>
@@ -420757,15 +419626,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03276c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03276c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01596c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03248c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01596c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03248c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09955" sboTerm="SBO:0000185" id="MAR09955" name="Secretion of 3-Methyl-Thio-Propionate" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09955" sboTerm="SBO:0000185" id="R_MAR09955" name="Secretion of 3-Methyl-Thio-Propionate" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -420774,7 +419643,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09955">
+            <rdf:Description rdf:about="#R_MAR09955">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.3"/>
@@ -420786,13 +419655,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03248c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03248c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03248e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03248e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09956" sboTerm="SBO:0000627" id="MAR09956" name="Exchange of 3-Methyl-Thio-Propionate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09956" sboTerm="SBO:0000627" id="R_MAR09956" name="Exchange of 3-Methyl-Thio-Propionate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -420800,7 +419669,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09956">
+            <rdf:Description rdf:about="#R_MAR09956">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_3mtp_e"/>
@@ -420811,10 +419680,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03248e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03248e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR09957" sboTerm="SBO:0000185" id="MAR09957" name="Transport of Elaidic Carnitine, Sodium Symport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09957" sboTerm="SBO:0000185" id="R_MAR09957" name="Transport of Elaidic Carnitine, Sodium Symport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -420822,7 +419691,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09957">
+            <rdf:Description rdf:about="#R_MAR09957">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.4"/>
@@ -420834,15 +419703,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00126c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00126c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00126e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00126e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09958" sboTerm="SBO:0000176" id="MAR09958" name="Formation of Glycerol-3-Phosphate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09958" sboTerm="SBO:0000176" id="R_MAR09958" name="Formation of Glycerol-3-Phosphate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -420851,7 +419720,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09958">
+            <rdf:Description rdf:about="#R_MAR09958">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.4"/>
@@ -420863,13 +419732,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03619c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03619c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02914c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02914c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09959" sboTerm="SBO:0000185" id="MAR09959" name="Transport of Linoleyl Carnitine, Sodium Symport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09959" sboTerm="SBO:0000185" id="R_MAR09959" name="Transport of Linoleyl Carnitine, Sodium Symport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -420877,7 +419746,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09959">
+            <rdf:Description rdf:about="#R_MAR09959">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.4"/>
@@ -420889,15 +419758,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02388c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02388c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02388e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02388e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09960" sboTerm="SBO:0000185" id="MAR09960" name="Transport of Phenyl Lactate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09960" sboTerm="SBO:0000185" id="R_MAR09960" name="Transport of Phenyl Lactate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -420905,7 +419774,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09960">
+            <rdf:Description rdf:about="#R_MAR09960">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.4"/>
@@ -420917,15 +419786,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03882c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03882c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03882e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03882e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09961" sboTerm="SBO:0000185" id="MAR09961" name="Transport of Tetradecanoyl Carnitine, Sodium Symport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09961" sboTerm="SBO:0000185" id="R_MAR09961" name="Transport of Tetradecanoyl Carnitine, Sodium Symport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -420933,7 +419802,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09961">
+            <rdf:Description rdf:about="#R_MAR09961">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.4"/>
@@ -420945,15 +419814,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02974c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02974c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02974e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02974e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09962" sboTerm="SBO:0000185" id="MAR09962" name="Transport of 12-Hydroperoxyeicosa-5, 8, 10, 14-Tetraenoate, by FATP" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09962" sboTerm="SBO:0000185" id="R_MAR09962" name="Transport of 12-Hydroperoxyeicosa-5, 8, 10, 14-Tetraenoate, by FATP" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -420962,7 +419831,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09962">
+            <rdf:Description rdf:about="#R_MAR09962">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.4"/>
@@ -420974,18 +419843,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00309c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00309c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00309e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00309e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09963" sboTerm="SBO:0000185" id="MAR09963" name="Transport of 15(S)-HPETE, Active Transport" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09963" sboTerm="SBO:0000185" id="R_MAR09963" name="Transport of 15(S)-HPETE, Active Transport" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -420994,7 +419863,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09963">
+            <rdf:Description rdf:about="#R_MAR09963">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.4"/>
@@ -421006,18 +419875,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00380c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00380c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00380e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00380e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09964" sboTerm="SBO:0000185" id="MAR09964" name="Transport of 15-Keto-Prostaglandin F2A, Lactate Antiport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09964" sboTerm="SBO:0000185" id="R_MAR09964" name="Transport of 15-Keto-Prostaglandin F2A, Lactate Antiport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -421026,7 +419895,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09964">
+            <rdf:Description rdf:about="#R_MAR09964">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.4"/>
@@ -421038,15 +419907,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02403e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01892c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02403e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01892c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02403c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01892e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02403c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01892e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09965" sboTerm="SBO:0000185" id="MAR09965" name="Transport of 21-Hydroxypregnenolone, Active Transport" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09965" sboTerm="SBO:0000185" id="R_MAR09965" name="Transport of 21-Hydroxypregnenolone, Active Transport" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -421054,7 +419923,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09965">
+            <rdf:Description rdf:about="#R_MAR09965">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.4"/>
@@ -421066,18 +419935,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00605c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00605c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00605e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00605e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09966" sboTerm="SBO:0000185" id="MAR09966" name="Transport of 21-Hydroxypregnenolone, Diffusion" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09966" sboTerm="SBO:0000185" id="R_MAR09966" name="Transport of 21-Hydroxypregnenolone, Diffusion" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -421085,7 +419954,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09966">
+            <rdf:Description rdf:about="#R_MAR09966">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.4"/>
@@ -421097,13 +419966,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00605c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00605c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00605e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00605e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09967" sboTerm="SBO:0000185" id="MAR09967" name="Transport of 2-Oxoadipate by Alpha-Ketoglutarate Antiport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09967" sboTerm="SBO:0000185" id="R_MAR09967" name="Transport of 2-Oxoadipate by Alpha-Ketoglutarate Antiport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -421111,7 +419980,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09967">
+            <rdf:Description rdf:about="#R_MAR09967">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.4"/>
@@ -421123,15 +419992,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00670c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01306e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00670c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01306e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01306c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00670e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01306c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00670e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09968" sboTerm="SBO:0000185" id="MAR09968" name="Transport of 3- (4-Hydroxyphenyl)Lactate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09968" sboTerm="SBO:0000185" id="R_MAR09968" name="Transport of 3- (4-Hydroxyphenyl)Lactate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -421139,7 +420008,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09968">
+            <rdf:Description rdf:about="#R_MAR09968">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.4"/>
@@ -421151,15 +420020,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01004c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01004c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01004e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01004e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09969" sboTerm="SBO:0000185" id="MAR09969" name="Transport of 3-Hydroxy-2-Methylpropanoate, Diffusion" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09969" sboTerm="SBO:0000185" id="R_MAR09969" name="Transport of 3-Hydroxy-2-Methylpropanoate, Diffusion" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -421167,7 +420036,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09969">
+            <rdf:Description rdf:about="#R_MAR09969">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.4"/>
@@ -421179,13 +420048,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00784c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00784c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00784e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00784e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09970" sboTerm="SBO:0000185" id="MAR09970" name="Transport of 3- (3-Hydroxy-Phenyl)Propionate Hydroxy Derivative Glucuronide into Urine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09970" sboTerm="SBO:0000185" id="R_MAR09970" name="Transport of 3- (3-Hydroxy-Phenyl)Propionate Hydroxy Derivative Glucuronide into Urine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -421194,7 +420063,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09970">
+            <rdf:Description rdf:about="#R_MAR09970">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.4"/>
@@ -421206,13 +420075,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03234c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03234c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03234e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03234e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09971" sboTerm="SBO:0000176" id="MAR09971" name="Hydroxylation of 3- (3-Hydroxyphenyl)Propionate" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09971" sboTerm="SBO:0000176" id="R_MAR09971" name="Hydroxylation of 3- (3-Hydroxyphenyl)Propionate" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -421221,7 +420090,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09971">
+            <rdf:Description rdf:about="#R_MAR09971">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.4"/>
@@ -421233,18 +420102,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03232c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03232c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03233c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03233c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09972" sboTerm="SBO:0000185" id="MAR09972" name="Transpot of 3-Hydroxypropionate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09972" sboTerm="SBO:0000185" id="R_MAR09972" name="Transpot of 3-Hydroxypropionate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -421252,7 +420121,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09972">
+            <rdf:Description rdf:about="#R_MAR09972">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.4"/>
@@ -421264,13 +420133,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02142c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02142c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02142e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02142e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09973" sboTerm="SBO:0000185" id="MAR09973" name="Transport of Methyl-Histidine by System N Transport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09973" sboTerm="SBO:0000185" id="R_MAR09973" name="Transport of Methyl-Histidine by System N Transport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -421279,7 +420148,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09973">
+            <rdf:Description rdf:about="#R_MAR09973">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.4"/>
@@ -421291,15 +420160,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03247c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03247c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03247e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03247e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09974" sboTerm="SBO:0000185" id="MAR09974" name="Transport of Methyl-Histidine by System L Transport (Lat1)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09974" sboTerm="SBO:0000185" id="R_MAR09974" name="Transport of Methyl-Histidine by System L Transport (Lat1)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -421308,7 +420177,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09974">
+            <rdf:Description rdf:about="#R_MAR09974">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.4"/>
@@ -421320,15 +420189,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02360c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03247e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02360c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03247e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02360e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03247c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02360e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03247c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09975" sboTerm="SBO:0000185" id="MAR09975" name="Transport of Methyl-Histidine by System L Transport (Lat2)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09975" sboTerm="SBO:0000185" id="R_MAR09975" name="Transport of Methyl-Histidine by System L Transport (Lat2)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -421337,7 +420206,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09975">
+            <rdf:Description rdf:about="#R_MAR09975">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.4"/>
@@ -421349,15 +420218,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02724c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03247e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02724c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03247e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02724e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03247c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02724e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03247c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09976" sboTerm="SBO:0000185" id="MAR09976" name="Transport of 3-Methoxytyramine, Diffusion" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09976" sboTerm="SBO:0000185" id="R_MAR09976" name="Transport of 3-Methoxytyramine, Diffusion" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -421365,7 +420234,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09976">
+            <rdf:Description rdf:about="#R_MAR09976">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.4"/>
@@ -421377,13 +420246,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00821c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00821c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00821e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00821e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09977" sboTerm="SBO:0000185" id="MAR09977" name="Transport of 3-Ureidoisobutyrate, Diffusion" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09977" sboTerm="SBO:0000185" id="R_MAR09977" name="Transport of 3-Ureidoisobutyrate, Diffusion" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -421391,7 +420260,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09977">
+            <rdf:Description rdf:about="#R_MAR09977">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.4"/>
@@ -421403,13 +420272,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00922c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00922c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00922e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00922e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09978" sboTerm="SBO:0000185" id="MAR09978" name="Diffusion of 4-Acetamidobutanoate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09978" sboTerm="SBO:0000185" id="R_MAR09978" name="Diffusion of 4-Acetamidobutanoate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -421417,7 +420286,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09978">
+            <rdf:Description rdf:about="#R_MAR09978">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.4"/>
@@ -421429,13 +420298,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00952e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00952e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00952c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00952c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09979" sboTerm="SBO:0000185" id="MAR09979" name="Transport of 4- (Trimethylammonio)Butanoate, Sodium Symport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09979" sboTerm="SBO:0000185" id="R_MAR09979" name="Transport of 4- (Trimethylammonio)Butanoate, Sodium Symport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -421443,7 +420312,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09979">
+            <rdf:Description rdf:about="#R_MAR09979">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.4"/>
@@ -421455,15 +420324,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01922c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01922c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01922e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01922e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09980" sboTerm="SBO:0000185" id="MAR09980" name="Transport of 4- (Trimethylammonio)Butanoate, Proton Symport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09980" sboTerm="SBO:0000185" id="R_MAR09980" name="Transport of 4- (Trimethylammonio)Butanoate, Proton Symport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -421471,7 +420340,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09980">
+            <rdf:Description rdf:about="#R_MAR09980">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.4"/>
@@ -421483,15 +420352,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01922c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01922c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01922e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01922e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09981" sboTerm="SBO:0000185" id="MAR09981" name="Transport of 5, 6-Dihydrothymine, Sodium Symport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09981" sboTerm="SBO:0000185" id="R_MAR09981" name="Transport of 5, 6-Dihydrothymine, Sodium Symport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -421499,7 +420368,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09981">
+            <rdf:Description rdf:about="#R_MAR09981">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.4"/>
@@ -421511,15 +420380,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01705c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01705c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01705e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01705e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09982" sboTerm="SBO:0000185" id="MAR09982" name="Transport of 5, 6-Dihydrothymine, Diffusion" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09982" sboTerm="SBO:0000185" id="R_MAR09982" name="Transport of 5, 6-Dihydrothymine, Diffusion" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -421527,7 +420396,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09982">
+            <rdf:Description rdf:about="#R_MAR09982">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.4"/>
@@ -421539,13 +420408,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01705c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01705c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01705e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01705e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09983" sboTerm="SBO:0000185" id="MAR09983" name="Transport of 5, 6-Dihydrouracil, Sodium Symport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09983" sboTerm="SBO:0000185" id="R_MAR09983" name="Transport of 5, 6-Dihydrouracil, Sodium Symport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -421553,7 +420422,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09983">
+            <rdf:Description rdf:about="#R_MAR09983">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.4"/>
@@ -421565,15 +420434,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01052c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01052c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01052e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01052e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09984" sboTerm="SBO:0000185" id="MAR09984" name="Transport of 5, 6-Dihydrouracil, Diffusion" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09984" sboTerm="SBO:0000185" id="R_MAR09984" name="Transport of 5, 6-Dihydrouracil, Diffusion" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -421581,7 +420450,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09984">
+            <rdf:Description rdf:about="#R_MAR09984">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.4"/>
@@ -421593,13 +420462,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01052c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01052c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01052e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01052e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09985" sboTerm="SBO:0000185" id="MAR09985" name="Transport of 5-Amino-4-Oxopentanoate, Proton Symport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09985" sboTerm="SBO:0000185" id="R_MAR09985" name="Transport of 5-Amino-4-Oxopentanoate, Proton Symport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -421608,7 +420477,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09985">
+            <rdf:Description rdf:about="#R_MAR09985">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.4"/>
@@ -421620,15 +420489,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01074c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01074c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="2" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039e" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM01074e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01074e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09986" sboTerm="SBO:0000185" id="MAR09986" name="Transport of 5(S)-HPETE, Active Transport" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09986" sboTerm="SBO:0000185" id="R_MAR09986" name="Transport of 5(S)-HPETE, Active Transport" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -421637,7 +420506,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09986">
+            <rdf:Description rdf:about="#R_MAR09986">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.4"/>
@@ -421649,18 +420518,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01042c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01042c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01042e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01042e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09987" sboTerm="SBO:0000185" id="MAR09987" name="Transport of 5(S)-HPETE, Diffusion" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09987" sboTerm="SBO:0000185" id="R_MAR09987" name="Transport of 5(S)-HPETE, Diffusion" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -421668,7 +420537,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09987">
+            <rdf:Description rdf:about="#R_MAR09987">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.4"/>
@@ -421680,13 +420549,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01042c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01042c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01042e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01042e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09988" sboTerm="SBO:0000185" id="MAR09988" name="Transport of Cholesta-5, 7-Dien-3Beta-Ol, Active Transport" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09988" sboTerm="SBO:0000185" id="R_MAR09988" name="Transport of Cholesta-5, 7-Dien-3Beta-Ol, Active Transport" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -421694,7 +420563,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09988">
+            <rdf:Description rdf:about="#R_MAR09988">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.4"/>
@@ -421706,18 +420575,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02805c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02805c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02805e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02805e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09989" sboTerm="SBO:0000185" id="MAR09989" name="Transport of Cholesta-5, 7-Dien-3Beta-Ol, Diffusion" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09989" sboTerm="SBO:0000185" id="R_MAR09989" name="Transport of Cholesta-5, 7-Dien-3Beta-Ol, Diffusion" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -421725,7 +420594,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09989">
+            <rdf:Description rdf:about="#R_MAR09989">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.4"/>
@@ -421737,13 +420606,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02805c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02805c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02805e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02805e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09990" sboTerm="SBO:0000185" id="MAR09990" name="D-Arabitol Transport via Diffusion" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09990" sboTerm="SBO:0000185" id="R_MAR09990" name="D-Arabitol Transport via Diffusion" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -421751,7 +420620,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09990">
+            <rdf:Description rdf:about="#R_MAR09990">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.4"/>
@@ -421763,13 +420632,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03396e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03396e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03396c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03396c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09991" sboTerm="SBO:0000185" id="MAR09991" name="D-Arabitol Transport in via Proton Symporter" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09991" sboTerm="SBO:0000185" id="R_MAR09991" name="D-Arabitol Transport in via Proton Symporter" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -421777,7 +420646,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09991">
+            <rdf:Description rdf:about="#R_MAR09991">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.4"/>
@@ -421790,15 +420659,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03396e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03396e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03396c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03396c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09992" sboTerm="SBO:0000176" id="MAR09992" name="L-Arabinitol 4-Dehydrogenase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09992" sboTerm="SBO:0000176" id="R_MAR09992" name="L-Arabinitol 4-Dehydrogenase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -421807,7 +420676,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09992">
+            <rdf:Description rdf:about="#R_MAR09992">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.4"/>
@@ -421819,16 +420688,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02552c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03396c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03396c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02425c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02425c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09993" sboTerm="SBO:0000185" id="MAR09993" name="Transport of N-Acetyl-L-Glutamate, Diffusion" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09993" sboTerm="SBO:0000185" id="R_MAR09993" name="Transport of N-Acetyl-L-Glutamate, Diffusion" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -421836,7 +420705,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09993">
+            <rdf:Description rdf:about="#R_MAR09993">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.4"/>
@@ -421848,13 +420717,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02536c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02536c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02536e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02536e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09994" sboTerm="SBO:0000185" id="MAR09994" name="Intra-Cellular Transport of Acetyl-Glycine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09994" sboTerm="SBO:0000185" id="R_MAR09994" name="Intra-Cellular Transport of Acetyl-Glycine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -421863,7 +420732,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09994">
+            <rdf:Description rdf:about="#R_MAR09994">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.4"/>
@@ -421875,13 +420744,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03397m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03397m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03397c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03397c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09995" sboTerm="SBO:0000185" id="MAR09995" name="Extracellular Transport of Acetyl-Glycine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09995" sboTerm="SBO:0000185" id="R_MAR09995" name="Extracellular Transport of Acetyl-Glycine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -421890,7 +420759,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09995">
+            <rdf:Description rdf:about="#R_MAR09995">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.4"/>
@@ -421902,13 +420771,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03397c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03397c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03397e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03397e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09996" sboTerm="SBO:0000185" id="MAR09996" name="Transport of Acetyl-Lysine, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09996" sboTerm="SBO:0000185" id="R_MAR09996" name="Transport of Acetyl-Lysine, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -421916,7 +420785,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09996">
+            <rdf:Description rdf:about="#R_MAR09996">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.4"/>
@@ -421928,13 +420797,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03401c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03401c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03401e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03401e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09997" sboTerm="SBO:0000185" id="MAR09997" name="Intracellular Transport of Acetyl-Lysine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09997" sboTerm="SBO:0000185" id="R_MAR09997" name="Intracellular Transport of Acetyl-Lysine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -421942,7 +420811,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09997">
+            <rdf:Description rdf:about="#R_MAR09997">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.4"/>
@@ -421954,13 +420823,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03401m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03401m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03401c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03401c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09998" sboTerm="SBO:0000185" id="MAR09998" name="Diffusion of N(2)-Acetyl-L-Ornithine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09998" sboTerm="SBO:0000185" id="R_MAR09998" name="Diffusion of N(2)-Acetyl-L-Ornithine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -421968,7 +420837,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09998">
+            <rdf:Description rdf:about="#R_MAR09998">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.4"/>
@@ -421980,13 +420849,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02546c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02546c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02546e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02546e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR09999" sboTerm="SBO:0000185" id="MAR09999" name="Intra-Cellular Transport of Acetyl-Threonine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR09999" sboTerm="SBO:0000185" id="R_MAR09999" name="Intra-Cellular Transport of Acetyl-Threonine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -421995,7 +420864,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR09999">
+            <rdf:Description rdf:about="#R_MAR09999">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.4"/>
@@ -422007,13 +420876,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03406m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03406m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03406c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03406c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10000" sboTerm="SBO:0000185" id="MAR10000" name="Extracellular Transport of Acetyl-Threonine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10000" sboTerm="SBO:0000185" id="R_MAR10000" name="Extracellular Transport of Acetyl-Threonine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -422022,7 +420891,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10000">
+            <rdf:Description rdf:about="#R_MAR10000">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.4"/>
@@ -422034,13 +420903,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03406c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03406c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03406e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03406e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10001" sboTerm="SBO:0000185" id="MAR10001" name="Transport of Adipic Acid, Diffusion" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10001" sboTerm="SBO:0000185" id="R_MAR10001" name="Transport of Adipic Acid, Diffusion" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -422049,7 +420918,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10001">
+            <rdf:Description rdf:about="#R_MAR10001">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.4"/>
@@ -422061,13 +420930,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03408c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03408c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03408e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03408e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10002" sboTerm="SBO:0000185" id="MAR10002" name="Secretion of 2-Hydroxyadipic Acid" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10002" sboTerm="SBO:0000185" id="R_MAR10002" name="Secretion of 2-Hydroxyadipic Acid" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -422075,7 +420944,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10002">
+            <rdf:Description rdf:about="#R_MAR10002">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.4"/>
@@ -422087,13 +420956,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03410c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03410c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03410e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03410e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10003" sboTerm="SBO:0000185" id="MAR10003" name="Transport of Allantoin" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10003" sboTerm="SBO:0000185" id="R_MAR10003" name="Transport of Allantoin" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -422101,7 +420970,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10003">
+            <rdf:Description rdf:about="#R_MAR10003">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.4"/>
@@ -422114,13 +420983,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01313c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01313c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01313e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01313e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10004" sboTerm="SBO:0000185" id="MAR10004" name="Transport of S-Adenosyl-L-Methionine, Paracellular Transport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10004" sboTerm="SBO:0000185" id="R_MAR10004" name="Transport of S-Adenosyl-L-Methionine, Paracellular Transport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -422129,7 +420998,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10004">
+            <rdf:Description rdf:about="#R_MAR10004">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.4"/>
@@ -422141,13 +421010,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02877c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02877c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02877e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02877e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10005" sboTerm="SBO:0000185" id="MAR10005" name="Secretion of 19-Hydroxyandrost-4-Ene-3, 17-Dione" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10005" sboTerm="SBO:0000185" id="R_MAR10005" name="Secretion of 19-Hydroxyandrost-4-Ene-3, 17-Dione" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -422155,7 +421024,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10005">
+            <rdf:Description rdf:about="#R_MAR10005">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.2.2"/>
@@ -422167,13 +421036,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03433c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03433c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03433e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03433e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10006" sboTerm="SBO:0000185" id="MAR10006" name="Transport of Biliverdin" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10006" sboTerm="SBO:0000185" id="R_MAR10006" name="Transport of Biliverdin" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -422181,7 +421050,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10006">
+            <rdf:Description rdf:about="#R_MAR10006">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.2.2"/>
@@ -422193,15 +421062,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01399c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01399c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01399e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01399e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10007" sboTerm="SBO:0000185" id="MAR10007" name="(S)-2-Aminobutanoate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10007" sboTerm="SBO:0000185" id="R_MAR10007" name="(S)-2-Aminobutanoate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -422209,7 +421078,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10007">
+            <rdf:Description rdf:about="#R_MAR10007">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.2.2"/>
@@ -422221,13 +421090,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00169c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00169c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00169e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00169e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10008" sboTerm="SBO:0000185" id="MAR10008" name="Transport of N-Acetylmethionine, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10008" sboTerm="SBO:0000185" id="R_MAR10008" name="Transport of N-Acetylmethionine, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -422236,7 +421105,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10008">
+            <rdf:Description rdf:about="#R_MAR10008">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.4.2"/>
@@ -422248,18 +421117,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02540c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02540c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02540e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02540e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Indy"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10009" sboTerm="SBO:0000185" id="MAR10009" name="Transport of N-Acetylmethionine, Intracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10009" sboTerm="SBO:0000185" id="R_MAR10009" name="Transport of N-Acetylmethionine, Intracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -422268,7 +421137,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10009">
+            <rdf:Description rdf:about="#R_MAR10009">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.5.1.17"/>
@@ -422280,13 +421149,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02540c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02540c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02540m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02540m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10010" sboTerm="SBO:0000185" id="MAR10010" name="Transport of Lithocholate, Active Transport" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10010" sboTerm="SBO:0000185" id="R_MAR10010" name="Transport of Lithocholate, Active Transport" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -422295,7 +421164,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10010">
+            <rdf:Description rdf:about="#R_MAR10010">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.3.2.11"/>
@@ -422307,15 +421176,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02402c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02402c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02402e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02402e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -422324,7 +421193,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10011" sboTerm="SBO:0000185" id="MAR10011" name="Transport of Lithocholate, Sodium Symport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10011" sboTerm="SBO:0000185" id="R_MAR10011" name="Transport of Lithocholate, Sodium Symport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -422333,7 +421202,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10011">
+            <rdf:Description rdf:about="#R_MAR10011">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/C03990t"/>
@@ -422344,18 +421213,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02402c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02402c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02402e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02402e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG11655"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10012" sboTerm="SBO:0000185" id="MAR10012" name="Transport of Lithocholate, Intracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10012" sboTerm="SBO:0000185" id="R_MAR10012" name="Transport of Lithocholate, Intracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -422363,7 +421232,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10012">
+            <rdf:Description rdf:about="#R_MAR10012">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/C03990tr"/>
@@ -422374,13 +421243,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02402r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02402r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02402c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02402c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10013" sboTerm="SBO:0000185" id="MAR10013" name="Transport of Lithocholate, Intracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10013" sboTerm="SBO:0000185" id="R_MAR10013" name="Transport of Lithocholate, Intracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -422388,7 +421257,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10013">
+            <rdf:Description rdf:about="#R_MAR10013">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/C03990tx"/>
@@ -422399,13 +421268,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02402x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02402x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02402c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02402c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10014" sboTerm="SBO:0000185" id="MAR10014" name="Transport of Deoxycholate" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10014" sboTerm="SBO:0000185" id="R_MAR10014" name="Transport of Deoxycholate" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -422413,7 +421282,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10014">
+            <rdf:Description rdf:about="#R_MAR10014">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/C04483t1"/>
@@ -422424,15 +421293,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00745c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00745c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00745e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00745e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -422441,7 +421310,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10015" sboTerm="SBO:0000185" id="MAR10015" name="Transport of Deoxycholate, Antiport with Bicarbonate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10015" sboTerm="SBO:0000185" id="R_MAR10015" name="Transport of Deoxycholate, Antiport with Bicarbonate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -422450,7 +421319,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10015">
+            <rdf:Description rdf:about="#R_MAR10015">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/C04483t2"/>
@@ -422461,15 +421330,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00745c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00745c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00745e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00745e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10016" sboTerm="SBO:0000185" id="MAR10016" name="Transport of 13(S)-HPODE, Active" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10016" sboTerm="SBO:0000185" id="R_MAR10016" name="Transport of 13(S)-HPODE, Active" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -422478,7 +421347,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10016">
+            <rdf:Description rdf:about="#R_MAR10016">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/C04717ATP"/>
@@ -422489,18 +421358,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00337c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00337c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00337e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00337e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10017" sboTerm="SBO:0000185" id="MAR10017" name="Transport of 13(S)-HPODE, Diffusion" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10017" sboTerm="SBO:0000185" id="R_MAR10017" name="Transport of 13(S)-HPODE, Diffusion" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -422508,7 +421377,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10017">
+            <rdf:Description rdf:about="#R_MAR10017">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/C04717td"/>
@@ -422519,13 +421388,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00337c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00337c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00337e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00337e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10018" sboTerm="SBO:0000185" id="MAR10018" name="Transport of 5(S)-HETE, Active Transport" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10018" sboTerm="SBO:0000185" id="R_MAR10018" name="Transport of 5(S)-HETE, Active Transport" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -422534,7 +421403,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10018">
+            <rdf:Description rdf:about="#R_MAR10018">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/C04805ATP"/>
@@ -422545,18 +421414,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01040e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01040e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10019" sboTerm="SBO:0000185" id="MAR10019" name="Transport of 5(S)-HETE, Diffusion" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10019" sboTerm="SBO:0000185" id="R_MAR10019" name="Transport of 5(S)-HETE, Diffusion" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -422564,7 +421433,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10019">
+            <rdf:Description rdf:about="#R_MAR10019">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/C04805td"/>
@@ -422575,13 +421444,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01040e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01040e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10020" sboTerm="SBO:0000185" id="MAR10020" name="Transport of Taurodeoxycholate" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10020" sboTerm="SBO:0000185" id="R_MAR10020" name="Transport of Taurodeoxycholate" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -422589,7 +421458,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10020">
+            <rdf:Description rdf:about="#R_MAR10020">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/C05463t1"/>
@@ -422602,15 +421471,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02964c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02964c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02964e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02964e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -422619,7 +421488,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10021" sboTerm="SBO:0000185" id="MAR10021" name="Transport of Taurodeoxycholate, Antiport with Bicarbonate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10021" sboTerm="SBO:0000185" id="R_MAR10021" name="Transport of Taurodeoxycholate, Antiport with Bicarbonate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -422628,7 +421497,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10021">
+            <rdf:Description rdf:about="#R_MAR10021">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/C05463t2"/>
@@ -422639,15 +421508,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02964c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02964c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02964e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02964e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10022" sboTerm="SBO:0000185" id="MAR10022" name="Transport of Prostaglandin A2, Lactate Antiport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10022" sboTerm="SBO:0000185" id="R_MAR10022" name="Transport of Prostaglandin A2, Lactate Antiport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -422656,7 +421525,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10022">
+            <rdf:Description rdf:about="#R_MAR10022">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/C05953t"/>
@@ -422667,15 +421536,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02403e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02777c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02403e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02777c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02403c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02777e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02403c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02777e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10032" sboTerm="SBO:0000185" id="MAR10032" name="Transport of Prostaglandin A2, Intracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10032" sboTerm="SBO:0000185" id="R_MAR10032" name="Transport of Prostaglandin A2, Intracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -422683,7 +421552,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10032">
+            <rdf:Description rdf:about="#R_MAR10032">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/C05953tm"/>
@@ -422694,13 +421563,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02777m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02777m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02777c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02777c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10133" sboTerm="SBO:0000185" id="MAR10133" name="Transport of Prostaglandin A2, Intracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10133" sboTerm="SBO:0000185" id="R_MAR10133" name="Transport of Prostaglandin A2, Intracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -422708,7 +421577,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10133">
+            <rdf:Description rdf:about="#R_MAR10133">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/C05953tr"/>
@@ -422718,13 +421587,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02777r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02777r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02777c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02777c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10134" sboTerm="SBO:0000185" id="MAR10134" name="Transport of Prostaglandin J2, Lactate Antiport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10134" sboTerm="SBO:0000185" id="R_MAR10134" name="Transport of Prostaglandin J2, Lactate Antiport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -422733,7 +421602,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10134">
+            <rdf:Description rdf:about="#R_MAR10134">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/C05957t"/>
@@ -422744,15 +421613,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02403e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02796c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02403e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02796c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02403c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02796e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02403c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02796e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10135" sboTerm="SBO:0000185" id="MAR10135" name="Transport of Prostaglandin J2, Diffusion" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10135" sboTerm="SBO:0000185" id="R_MAR10135" name="Transport of Prostaglandin J2, Diffusion" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -422760,7 +421629,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10135">
+            <rdf:Description rdf:about="#R_MAR10135">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/C05957td"/>
@@ -422771,13 +421640,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02796c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02796c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02796e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02796e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10136" sboTerm="SBO:0000185" id="MAR10136" name="Transport of Lipoxin A4, Proton Symport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10136" sboTerm="SBO:0000185" id="R_MAR10136" name="Transport of Lipoxin A4, Proton Symport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -422786,7 +421655,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10136">
+            <rdf:Description rdf:about="#R_MAR10136">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/C06314t"/>
@@ -422797,15 +421666,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02395c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02395c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02395e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02395e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10137" sboTerm="SBO:0000185" id="MAR10137" name="Transport of Lipoxin B4, Proton Symport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10137" sboTerm="SBO:0000185" id="R_MAR10137" name="Transport of Lipoxin B4, Proton Symport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -422814,7 +421683,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10137">
+            <rdf:Description rdf:about="#R_MAR10137">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/C06315t"/>
@@ -422825,15 +421694,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02396c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02396c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02396e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02396e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10138" sboTerm="SBO:0000185" id="MAR10138" name="Transport of Prostaglandin E3, Lactate Antiport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10138" sboTerm="SBO:0000185" id="R_MAR10138" name="Transport of Prostaglandin E3, Lactate Antiport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -422842,7 +421711,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10138">
+            <rdf:Description rdf:about="#R_MAR10138">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/C06439t"/>
@@ -422853,15 +421722,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02403e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02787c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02403e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02787c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02403c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02787e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02403c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02787e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10139" sboTerm="SBO:0000185" id="MAR10139" name="Transport of Prostaglandin E3, Intracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10139" sboTerm="SBO:0000185" id="R_MAR10139" name="Transport of Prostaglandin E3, Intracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -422869,7 +421738,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10139">
+            <rdf:Description rdf:about="#R_MAR10139">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/C06439tn"/>
@@ -422879,13 +421748,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02787n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02787n" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02787c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02787c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10140" sboTerm="SBO:0000185" id="MAR10140" name="Transport of Anandamide, Diffusion" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10140" sboTerm="SBO:0000185" id="R_MAR10140" name="Transport of Anandamide, Diffusion" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -422894,7 +421763,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10140">
+            <rdf:Description rdf:about="#R_MAR10140">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/C11695td"/>
@@ -422905,13 +421774,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01335c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01335c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01335e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01335e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10141" sboTerm="SBO:0000185" id="MAR10141" name="Transport of 5, 6-EET, Active Transport" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10141" sboTerm="SBO:0000185" id="R_MAR10141" name="Transport of 5, 6-EET, Active Transport" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -422920,7 +421789,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10141">
+            <rdf:Description rdf:about="#R_MAR10141">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/C14768ATP"/>
@@ -422931,18 +421800,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01054c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01054c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01054e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01054e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10142" sboTerm="SBO:0000185" id="MAR10142" name="Transport of 5, 6-EET, Diffusion" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10142" sboTerm="SBO:0000185" id="R_MAR10142" name="Transport of 5, 6-EET, Diffusion" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -422950,7 +421819,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10142">
+            <rdf:Description rdf:about="#R_MAR10142">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/C14768td"/>
@@ -422961,13 +421830,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01054c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01054c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01054e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01054e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10143" sboTerm="SBO:0000185" id="MAR10143" name="Transport of 8, 9-EET, Diffusion" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10143" sboTerm="SBO:0000185" id="R_MAR10143" name="Transport of 8, 9-EET, Diffusion" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -422975,7 +421844,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10143">
+            <rdf:Description rdf:about="#R_MAR10143">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/C14769td1"/>
@@ -422986,13 +421855,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01209c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01209c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01209e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01209e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10144" sboTerm="SBO:0000185" id="MAR10144" name="Transport of 8, 9-EET, Active Transport" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10144" sboTerm="SBO:0000185" id="R_MAR10144" name="Transport of 8, 9-EET, Active Transport" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -423001,7 +421870,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10144">
+            <rdf:Description rdf:about="#R_MAR10144">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/C14769td2"/>
@@ -423012,18 +421881,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01209c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01209c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01209e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01209e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10145" sboTerm="SBO:0000627" id="MAR10145" name="Exchange of 8, 9-EET" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10145" sboTerm="SBO:0000627" id="R_MAR10145" name="Exchange of 8, 9-EET" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -423031,7 +421900,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10145">
+            <rdf:Description rdf:about="#R_MAR10145">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_C14769_e"/>
@@ -423042,10 +421911,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01209e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01209e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10146" sboTerm="SBO:0000185" id="MAR10146" name="Transport of 11, 12-EET, FATP" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10146" sboTerm="SBO:0000185" id="R_MAR10146" name="Transport of 11, 12-EET, FATP" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -423054,7 +421923,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10146">
+            <rdf:Description rdf:about="#R_MAR10146">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/C14770ATP"/>
@@ -423065,18 +421934,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00279c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00279c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00279e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00279e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10147" sboTerm="SBO:0000185" id="MAR10147" name="Transport of 14, 15-EET, Active Transport" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10147" sboTerm="SBO:0000185" id="R_MAR10147" name="Transport of 14, 15-EET, Active Transport" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -423085,7 +421954,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10147">
+            <rdf:Description rdf:about="#R_MAR10147">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/C14771ATP"/>
@@ -423096,18 +421965,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00366c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00366c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00366e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00366e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10148" sboTerm="SBO:0000185" id="MAR10148" name="Transport of 9 (10)-Epome, Active Transport" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10148" sboTerm="SBO:0000185" id="R_MAR10148" name="Transport of 9 (10)-Epome, Active Transport" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -423116,7 +421985,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10148">
+            <rdf:Description rdf:about="#R_MAR10148">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/C14825ATP"/>
@@ -423127,18 +421996,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01216c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01216c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01216e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01216e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10149" sboTerm="SBO:0000185" id="MAR10149" name="Transport of 9 (10)-Epome, Diffusion" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10149" sboTerm="SBO:0000185" id="R_MAR10149" name="Transport of 9 (10)-Epome, Diffusion" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -423146,7 +422015,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10149">
+            <rdf:Description rdf:about="#R_MAR10149">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/C14825td"/>
@@ -423157,13 +422026,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01216c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01216c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01216e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01216e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10150" sboTerm="SBO:0000185" id="MAR10150" name="Transport of 12 (13)-Epome, FATP" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10150" sboTerm="SBO:0000185" id="R_MAR10150" name="Transport of 12 (13)-Epome, FATP" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -423172,7 +422041,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10150">
+            <rdf:Description rdf:about="#R_MAR10150">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/C14826ATP"/>
@@ -423183,18 +422052,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00305c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00305c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00305e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00305e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10151" sboTerm="SBO:0000185" id="MAR10151" name="Transport of 12 (13)-Epome, Diffusion" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10151" sboTerm="SBO:0000185" id="R_MAR10151" name="Transport of 12 (13)-Epome, Diffusion" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -423202,7 +422071,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10151">
+            <rdf:Description rdf:about="#R_MAR10151">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/C14826td"/>
@@ -423213,13 +422082,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00305c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00305c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00305e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00305e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10152" sboTerm="SBO:0000185" id="MAR10152" name="Transport of 6-Oxo-Prostaglandin F1Alpha, Lactate Antiport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10152" sboTerm="SBO:0000185" id="R_MAR10152" name="Transport of 6-Oxo-Prostaglandin F1Alpha, Lactate Antiport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -423228,7 +422097,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10152">
+            <rdf:Description rdf:about="#R_MAR10152">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CE0955te"/>
@@ -423239,15 +422108,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01168c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02403e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01168c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02403e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02403c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01168e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02403c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01168e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10153" sboTerm="SBO:0000185" id="MAR10153" name="Transport of 6-Oxo-Prostaglandin F1Alpha, Intracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10153" sboTerm="SBO:0000185" id="R_MAR10153" name="Transport of 6-Oxo-Prostaglandin F1Alpha, Intracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -423255,7 +422124,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10153">
+            <rdf:Description rdf:about="#R_MAR10153">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CE0955tr"/>
@@ -423266,13 +422135,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01168r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01168r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01168c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01168c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10154" sboTerm="SBO:0000185" id="MAR10154" name="Transport of 12S-HHT, FATP" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10154" sboTerm="SBO:0000185" id="R_MAR10154" name="Transport of 12S-HHT, FATP" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -423281,7 +422150,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10154">
+            <rdf:Description rdf:about="#R_MAR10154">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CE1243ATP"/>
@@ -423292,18 +422161,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00308c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00308c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00308e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00308e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10155" sboTerm="SBO:0000185" id="MAR10155" name="Transport of 5Beta-Cholestane-3Alpha, 7Alpha, 12Alpha, 24S, 25-Pentol, Active Transport" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10155" sboTerm="SBO:0000185" id="R_MAR10155" name="Transport of 5Beta-Cholestane-3Alpha, 7Alpha, 12Alpha, 24S, 25-Pentol, Active Transport" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -423311,7 +422180,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10155">
+            <rdf:Description rdf:about="#R_MAR10155">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CE1273t1"/>
@@ -423322,15 +422191,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01087c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01087c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01087e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01087e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -423339,7 +422208,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10156" sboTerm="SBO:0000185" id="MAR10156" name="Transport of 5Beta-Cholestane-3Alpha, 7Alpha, 12Alpha, 24S, 25-Pentol, Atiport with Bicarbonate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10156" sboTerm="SBO:0000185" id="R_MAR10156" name="Transport of 5Beta-Cholestane-3Alpha, 7Alpha, 12Alpha, 24S, 25-Pentol, Atiport with Bicarbonate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -423348,7 +422217,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10156">
+            <rdf:Description rdf:about="#R_MAR10156">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CE1273t2"/>
@@ -423359,15 +422228,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01087c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01087c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01087e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01087e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10157" sboTerm="SBO:0000185" id="MAR10157" name="Active Transport of 8-Dehydrocholesterol" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10157" sboTerm="SBO:0000185" id="R_MAR10157" name="Active Transport of 8-Dehydrocholesterol" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -423375,7 +422244,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10157">
+            <rdf:Description rdf:about="#R_MAR10157">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CE1297t"/>
@@ -423386,18 +422255,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03329c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03329c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03329e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03329e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10158" sboTerm="SBO:0000185" id="MAR10158" name="Transport of 8-Dehydrocholesterol, Diffusion" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10158" sboTerm="SBO:0000185" id="R_MAR10158" name="Transport of 8-Dehydrocholesterol, Diffusion" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -423405,7 +422274,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10158">
+            <rdf:Description rdf:about="#R_MAR10158">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CE1297td"/>
@@ -423416,13 +422285,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03329c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03329c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03329e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03329e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10159" sboTerm="SBO:0000185" id="MAR10159" name="Transport of Acetyl-Alanine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10159" sboTerm="SBO:0000185" id="R_MAR10159" name="Transport of Acetyl-Alanine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -423430,7 +422299,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10159">
+            <rdf:Description rdf:about="#R_MAR10159">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/CE1554t"/>
@@ -423440,13 +422309,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02530c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02530c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02530e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02530e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10160" sboTerm="SBO:0000185" id="MAR10160" name="Transport of N-Acetyl-L-Asparagine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10160" sboTerm="SBO:0000185" id="R_MAR10160" name="Transport of N-Acetyl-L-Asparagine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -423454,7 +422323,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10160">
+            <rdf:Description rdf:about="#R_MAR10160">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CE1556td"/>
@@ -423465,13 +422334,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02531c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02531c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02531e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02531e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10161" sboTerm="SBO:0000185" id="MAR10161" name="Transport for Beta-Hydroxy-Beta-Methylbutyrate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10161" sboTerm="SBO:0000185" id="R_MAR10161" name="Transport for Beta-Hydroxy-Beta-Methylbutyrate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -423479,7 +422348,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10161">
+            <rdf:Description rdf:about="#R_MAR10161">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CE2028t"/>
@@ -423490,13 +422359,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01392c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01392c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01392e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01392e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10162" sboTerm="SBO:0000185" id="MAR10162" name="Transport of 3-O-Methyldopa" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10162" sboTerm="SBO:0000185" id="R_MAR10162" name="Transport of 3-O-Methyldopa" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -423505,7 +422374,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10162">
+            <rdf:Description rdf:about="#R_MAR10162">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CE2176t"/>
@@ -423516,15 +422385,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02360c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00830e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02360c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00830e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00830c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02360e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00830c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02360e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10163" sboTerm="SBO:0000185" id="MAR10163" name="Transport of 6-Trans-Leukotriene B4, Active Transport" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10163" sboTerm="SBO:0000185" id="R_MAR10163" name="Transport of 6-Trans-Leukotriene B4, Active Transport" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -423533,7 +422402,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10163">
+            <rdf:Description rdf:about="#R_MAR10163">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CE2445t"/>
@@ -423544,18 +422413,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01172c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01172c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01172e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01172e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10164" sboTerm="SBO:0000185" id="MAR10164" name="Transport of (8Z, 11Z, 14Z)-Eicosatrienoic Acid, Active Transport" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10164" sboTerm="SBO:0000185" id="R_MAR10164" name="Transport of (8Z, 11Z, 14Z)-Eicosatrienoic Acid, Active Transport" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -423564,7 +422433,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10164">
+            <rdf:Description rdf:about="#R_MAR10164">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/CE2516t"/>
@@ -423574,18 +422443,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03332c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03332c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03332e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03332e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10165" sboTerm="SBO:0000185" id="MAR10165" name="Transport of 15-Hydroxy- (8Z, 11Z, 13E)-Eicosatrienoate, Active Transport" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10165" sboTerm="SBO:0000185" id="R_MAR10165" name="Transport of 15-Hydroxy- (8Z, 11Z, 13E)-Eicosatrienoate, Active Transport" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -423594,7 +422463,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10165">
+            <rdf:Description rdf:about="#R_MAR10165">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CE2537ATP"/>
@@ -423605,18 +422474,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00378c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00378c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00378e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00378e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10166" sboTerm="SBO:0000185" id="MAR10166" name="Transport of Cis, Cis-11, 14-Eicosadienoyl Coenzyme A, Active Transport" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10166" sboTerm="SBO:0000185" id="R_MAR10166" name="Transport of Cis, Cis-11, 14-Eicosadienoyl Coenzyme A, Active Transport" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -423625,7 +422494,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10166">
+            <rdf:Description rdf:about="#R_MAR10166">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CE4843t"/>
@@ -423636,18 +422505,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03569c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03569c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03569e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03569e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10167" sboTerm="SBO:0000185" id="MAR10167" name="Transport of Cis, Cis-11, 14-Eicosadienoyl Coenzyme A, Diffusion" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10167" sboTerm="SBO:0000185" id="R_MAR10167" name="Transport of Cis, Cis-11, 14-Eicosadienoyl Coenzyme A, Diffusion" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -423655,7 +422524,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10167">
+            <rdf:Description rdf:about="#R_MAR10167">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CE4843td"/>
@@ -423666,13 +422535,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03569c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03569c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03569e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03569e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10168" sboTerm="SBO:0000185" id="MAR10168" name="Transport of 15-Deoxy-Pgd2, Antiport with Lactate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10168" sboTerm="SBO:0000185" id="R_MAR10168" name="Transport of 15-Deoxy-Pgd2, Antiport with Lactate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -423681,7 +422550,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10168">
+            <rdf:Description rdf:about="#R_MAR10168">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CE5304t"/>
@@ -423692,15 +422561,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00384c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02403e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00384c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02403e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02403c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00384e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02403c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00384e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10169" sboTerm="SBO:0000185" id="MAR10169" name="Transport of Androsterone Sulfate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10169" sboTerm="SBO:0000185" id="R_MAR10169" name="Transport of Androsterone Sulfate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -423709,7 +422578,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10169">
+            <rdf:Description rdf:about="#R_MAR10169">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CE6031t"/>
@@ -423720,13 +422589,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01337c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01337c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01337e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01337e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10170" sboTerm="SBO:0000185" id="MAR10170" name="Transport of 5, 12, 20-Trihete, Active Transport" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10170" sboTerm="SBO:0000185" id="R_MAR10170" name="Transport of 5, 12, 20-Trihete, Active Transport" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -423735,7 +422604,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10170">
+            <rdf:Description rdf:about="#R_MAR10170">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CE6247t"/>
@@ -423746,18 +422615,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01047c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01047c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01047e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01047e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10171" sboTerm="SBO:0000185" id="MAR10171" name="Transport of 15(S)-HEPE, Active Transport" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10171" sboTerm="SBO:0000185" id="R_MAR10171" name="Transport of 15(S)-HEPE, Active Transport" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -423766,7 +422635,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10171">
+            <rdf:Description rdf:about="#R_MAR10171">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CE7082ATP"/>
@@ -423777,18 +422646,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00376c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00376c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00376e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00376e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10172" sboTerm="SBO:0000185" id="MAR10172" name="Transport of Leukotriene B5, Active Transport" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10172" sboTerm="SBO:0000185" id="R_MAR10172" name="Transport of Leukotriene B5, Active Transport" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -423797,7 +422666,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10172">
+            <rdf:Description rdf:about="#R_MAR10172">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CE7083t"/>
@@ -423808,18 +422677,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02365c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02365c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02365e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02365e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10173" sboTerm="SBO:0000185" id="MAR10173" name="Transport of 14, 15-DIHETE, Active Transport" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10173" sboTerm="SBO:0000185" id="R_MAR10173" name="Transport of 14, 15-DIHETE, Active Transport" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -423828,7 +422697,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10173">
+            <rdf:Description rdf:about="#R_MAR10173">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CE7172ATP"/>
@@ -423839,18 +422708,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00365c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00365c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00365e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00365e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10174" sboTerm="SBO:0000185" id="MAR10174" name="Extracellular Transport of Cortisone" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10174" sboTerm="SBO:0000185" id="R_MAR10174" name="Extracellular Transport of Cortisone" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -423859,7 +422728,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10174">
+            <rdf:Description rdf:about="#R_MAR10174">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CORTSNt"/>
@@ -423870,13 +422739,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01616c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01616c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01616e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01616e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10175" sboTerm="SBO:0000185" id="MAR10175" name="Intracellular Transport of Cortisone" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10175" sboTerm="SBO:0000185" id="R_MAR10175" name="Intracellular Transport of Cortisone" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -423885,7 +422754,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10175">
+            <rdf:Description rdf:about="#R_MAR10175">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CORTSNti"/>
@@ -423896,13 +422765,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01616r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01616r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01616c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01616c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10176" sboTerm="SBO:0000185" id="MAR10176" name="Transport of Dodecanedioic Acid by FATP" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10176" sboTerm="SBO:0000185" id="R_MAR10176" name="Transport of Dodecanedioic Acid by FATP" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -423911,7 +422780,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10176">
+            <rdf:Description rdf:about="#R_MAR10176">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/DODECANACt"/>
@@ -423922,18 +422791,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03562c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03562c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03562e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03562e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10177" sboTerm="SBO:0000185" id="MAR10177" name="Transport of Dodecanedioic Acid by Diffusion" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10177" sboTerm="SBO:0000185" id="R_MAR10177" name="Transport of Dodecanedioic Acid by Diffusion" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -423941,7 +422810,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10177">
+            <rdf:Description rdf:about="#R_MAR10177">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/DODECANACtd"/>
@@ -423952,13 +422821,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03562c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03562c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03562e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03562e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10178" sboTerm="SBO:0000185" id="MAR10178" name="Transport of Elaidic Carnitine by Diffusion" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10178" sboTerm="SBO:0000185" id="R_MAR10178" name="Transport of Elaidic Carnitine by Diffusion" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -423966,7 +422835,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10178">
+            <rdf:Description rdf:about="#R_MAR10178">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ELAIDCRNtd"/>
@@ -423977,13 +422846,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00126c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00126c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00126e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00126e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10179" sboTerm="SBO:0000627" id="MAR10179" name="Exchange of 12-Hydroperoxyeicosa-5, 8, 10, 14-Tetraenoate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10179" sboTerm="SBO:0000627" id="R_MAR10179" name="Exchange of 12-Hydroperoxyeicosa-5, 8, 10, 14-Tetraenoate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -423991,7 +422860,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10179">
+            <rdf:Description rdf:about="#R_MAR10179">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_12HPET_e"/>
@@ -424003,10 +422872,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00309e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00309e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10180" sboTerm="SBO:0000627" id="MAR10180" name="Exchange of 15(S)-HPETE" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10180" sboTerm="SBO:0000627" id="R_MAR10180" name="Exchange of 15(S)-HPETE" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -424014,7 +422883,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10180">
+            <rdf:Description rdf:about="#R_MAR10180">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_15HPET_e"/>
@@ -424025,10 +422894,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00380e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00380e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10181" sboTerm="SBO:0000627" id="MAR10181" name="Exchange of 15-Keto-Prostaglandin F2A" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10181" sboTerm="SBO:0000627" id="R_MAR10181" name="Exchange of 15-Keto-Prostaglandin F2A" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -424036,7 +422905,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10181">
+            <rdf:Description rdf:about="#R_MAR10181">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_15kprostgf2_e"/>
@@ -424047,10 +422916,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01892e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01892e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10182" sboTerm="SBO:0000627" id="MAR10182" name="Exchange of 21-Hydroxypregnenolone" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10182" sboTerm="SBO:0000627" id="R_MAR10182" name="Exchange of 21-Hydroxypregnenolone" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -424058,7 +422927,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10182">
+            <rdf:Description rdf:about="#R_MAR10182">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_21hprgnlone_e"/>
@@ -424069,10 +422938,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00605e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00605e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10183" sboTerm="SBO:0000627" id="MAR10183" name="Exchange of 2-Oxoadipate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10183" sboTerm="SBO:0000627" id="R_MAR10183" name="Exchange of 2-Oxoadipate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -424080,7 +422949,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10183">
+            <rdf:Description rdf:about="#R_MAR10183">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_2oxoadp_e"/>
@@ -424091,10 +422960,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00670e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00670e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10184" sboTerm="SBO:0000627" id="MAR10184" name="Exchange of 3- (4-Hydroxyphenyl)Lactate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10184" sboTerm="SBO:0000627" id="R_MAR10184" name="Exchange of 3- (4-Hydroxyphenyl)Lactate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -424102,7 +422971,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10184">
+            <rdf:Description rdf:about="#R_MAR10184">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_34hpl_e"/>
@@ -424113,10 +422982,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01004e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01004e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10185" sboTerm="SBO:0000627" id="MAR10185" name="Exchange of 3-Hydroxy-2-Methylpropanoate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10185" sboTerm="SBO:0000627" id="R_MAR10185" name="Exchange of 3-Hydroxy-2-Methylpropanoate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -424124,7 +422993,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10185">
+            <rdf:Description rdf:about="#R_MAR10185">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_3hmp_e"/>
@@ -424135,10 +423004,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00784e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00784e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10186" sboTerm="SBO:0000627" id="MAR10186" name="Exchange of 3-Hydroxypropionate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10186" sboTerm="SBO:0000627" id="R_MAR10186" name="Exchange of 3-Hydroxypropionate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -424146,7 +423015,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10186">
+            <rdf:Description rdf:about="#R_MAR10186">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_3hpp_e"/>
@@ -424158,10 +423027,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02142e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02142e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10187" sboTerm="SBO:0000627" id="MAR10187" name="Exchange of 3- (3-Hydroxy-Phenyl)Propionate Hydroxy Derivative Glucuronide" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10187" sboTerm="SBO:0000627" id="R_MAR10187" name="Exchange of 3- (3-Hydroxy-Phenyl)Propionate Hydroxy Derivative Glucuronide" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -424169,7 +423038,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10187">
+            <rdf:Description rdf:about="#R_MAR10187">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_3hpppnohgluc_e"/>
@@ -424180,10 +423049,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03234e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03234e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10188" sboTerm="SBO:0000627" id="MAR10188" name="Exchange of Methyl-Histidine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10188" sboTerm="SBO:0000627" id="R_MAR10188" name="Exchange of Methyl-Histidine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -424191,7 +423060,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10188">
+            <rdf:Description rdf:about="#R_MAR10188">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_3mhis_e"/>
@@ -424202,10 +423071,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03247e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03247e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10189" sboTerm="SBO:0000627" id="MAR10189" name="Exchange of 3-Ureidoisobutyrate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10189" sboTerm="SBO:0000627" id="R_MAR10189" name="Exchange of 3-Ureidoisobutyrate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -424213,7 +423082,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10189">
+            <rdf:Description rdf:about="#R_MAR10189">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_3uib_e"/>
@@ -424224,10 +423093,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00922e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00922e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10190" sboTerm="SBO:0000627" id="MAR10190" name="Exchange of 4-Acetamidobutanoate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10190" sboTerm="SBO:0000627" id="R_MAR10190" name="Exchange of 4-Acetamidobutanoate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -424235,7 +423104,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10190">
+            <rdf:Description rdf:about="#R_MAR10190">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_4aabutn_e"/>
@@ -424246,10 +423115,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00952e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00952e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10191" sboTerm="SBO:0000627" id="MAR10191" name="Exchange of 4- (Trimethylammonio)Butanoate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10191" sboTerm="SBO:0000627" id="R_MAR10191" name="Exchange of 4- (Trimethylammonio)Butanoate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -424257,7 +423126,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10191">
+            <rdf:Description rdf:about="#R_MAR10191">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_4tmeabutn_e"/>
@@ -424268,10 +423137,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01922e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01922e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10192" sboTerm="SBO:0000627" id="MAR10192" name="Exchange of 5, 6-Dihydrothymine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10192" sboTerm="SBO:0000627" id="R_MAR10192" name="Exchange of 5, 6-Dihydrothymine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -424279,7 +423148,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10192">
+            <rdf:Description rdf:about="#R_MAR10192">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_56dthm_e"/>
@@ -424290,10 +423159,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01705e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01705e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10193" sboTerm="SBO:0000627" id="MAR10193" name="Exchange of 5, 6-Dihydrouracil" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10193" sboTerm="SBO:0000627" id="R_MAR10193" name="Exchange of 5, 6-Dihydrouracil" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -424301,7 +423170,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10193">
+            <rdf:Description rdf:about="#R_MAR10193">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_56dura_e"/>
@@ -424312,10 +423181,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01052e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01052e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10194" sboTerm="SBO:0000627" id="MAR10194" name="Exchange of 5(S)-HPETE" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10194" sboTerm="SBO:0000627" id="R_MAR10194" name="Exchange of 5(S)-HPETE" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -424323,7 +423192,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10194">
+            <rdf:Description rdf:about="#R_MAR10194">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_5HPET_e"/>
@@ -424334,10 +423203,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01042e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01042e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10195" sboTerm="SBO:0000627" id="MAR10195" name="Exchange of Cholesta-5, 7-Dien-3Beta-Ol" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10195" sboTerm="SBO:0000627" id="R_MAR10195" name="Exchange of Cholesta-5, 7-Dien-3Beta-Ol" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -424345,7 +423214,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10195">
+            <rdf:Description rdf:about="#R_MAR10195">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_7dhchsterol_e"/>
@@ -424356,10 +423225,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02805e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02805e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10196" sboTerm="SBO:0000627" id="MAR10196" name="Exchange of Acetyl-Glycine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10196" sboTerm="SBO:0000627" id="R_MAR10196" name="Exchange of Acetyl-Glycine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -424367,7 +423236,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10196">
+            <rdf:Description rdf:about="#R_MAR10196">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_acgly_e"/>
@@ -424378,10 +423247,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03397e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03397e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10197" sboTerm="SBO:0000627" id="MAR10197" name="Exchange of Acetyl-Lysine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10197" sboTerm="SBO:0000627" id="R_MAR10197" name="Exchange of Acetyl-Lysine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -424389,7 +423258,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10197">
+            <rdf:Description rdf:about="#R_MAR10197">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_aclys_e"/>
@@ -424400,10 +423269,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03401e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03401e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10198" sboTerm="SBO:0000627" id="MAR10198" name="Exchange of N (2)-Acetyl-L-Ornithine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10198" sboTerm="SBO:0000627" id="R_MAR10198" name="Exchange of N (2)-Acetyl-L-Ornithine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -424411,7 +423280,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10198">
+            <rdf:Description rdf:about="#R_MAR10198">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_acorn_e"/>
@@ -424422,10 +423291,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02546e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02546e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10199" sboTerm="SBO:0000627" id="MAR10199" name="Exchange of Acetyl-Threonine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10199" sboTerm="SBO:0000627" id="R_MAR10199" name="Exchange of Acetyl-Threonine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -424433,7 +423302,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10199">
+            <rdf:Description rdf:about="#R_MAR10199">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_acthr__L_e"/>
@@ -424444,10 +423313,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03406e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03406e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10200" sboTerm="SBO:0000627" id="MAR10200" name="Exchange of Adipic Acid" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10200" sboTerm="SBO:0000627" id="R_MAR10200" name="Exchange of Adipic Acid" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -424455,7 +423324,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10200">
+            <rdf:Description rdf:about="#R_MAR10200">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_adpac_e"/>
@@ -424466,10 +423335,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03408e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03408e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10201" sboTerm="SBO:0000627" id="MAR10201" name="Exchange of 2-Hydroxyadipic Acid" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10201" sboTerm="SBO:0000627" id="R_MAR10201" name="Exchange of 2-Hydroxyadipic Acid" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -424477,7 +423346,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10201">
+            <rdf:Description rdf:about="#R_MAR10201">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_adpoh_e"/>
@@ -424488,10 +423357,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03410e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03410e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10202" sboTerm="SBO:0000627" id="MAR10202" name="Exchange of S-Adenosyl-L-Methionine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10202" sboTerm="SBO:0000627" id="R_MAR10202" name="Exchange of S-Adenosyl-L-Methionine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -424499,7 +423368,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10202">
+            <rdf:Description rdf:about="#R_MAR10202">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_amet_e"/>
@@ -424511,10 +423380,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02877e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02877e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10203" sboTerm="SBO:0000627" id="MAR10203" name="Exchange of 19-Hydroxyandrost-4-Ene-3, 17-Dione" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10203" sboTerm="SBO:0000627" id="R_MAR10203" name="Exchange of 19-Hydroxyandrost-4-Ene-3, 17-Dione" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -424522,7 +423391,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10203">
+            <rdf:Description rdf:about="#R_MAR10203">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_and19one_e"/>
@@ -424533,10 +423402,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03433e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03433e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10204" sboTerm="SBO:0000627" id="MAR10204" name="Exchange of O-Arachidonoyl Ethanolamine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10204" sboTerm="SBO:0000627" id="R_MAR10204" name="Exchange of O-Arachidonoyl Ethanolamine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -424544,7 +423413,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10204">
+            <rdf:Description rdf:about="#R_MAR10204">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_aracheth_e"/>
@@ -424555,10 +423424,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03434e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03434e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10205" sboTerm="SBO:0000627" id="MAR10205" name="Exchange of Biliverdin" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10205" sboTerm="SBO:0000627" id="R_MAR10205" name="Exchange of Biliverdin" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -424566,7 +423435,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10205">
+            <rdf:Description rdf:about="#R_MAR10205">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_biliverd_e"/>
@@ -424577,10 +423446,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01399e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01399e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10206" sboTerm="SBO:0000627" id="MAR10206" name="(S)-2-Aminobutanoate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10206" sboTerm="SBO:0000627" id="R_MAR10206" name="(S)-2-Aminobutanoate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -424588,7 +423457,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10206">
+            <rdf:Description rdf:about="#R_MAR10206">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_C02356_e"/>
@@ -424599,10 +423468,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00169e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00169e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10207" sboTerm="SBO:0000627" id="MAR10207" name="Exchange of N-Acetylmethionine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10207" sboTerm="SBO:0000627" id="R_MAR10207" name="Exchange of N-Acetylmethionine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -424610,7 +423479,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10207">
+            <rdf:Description rdf:about="#R_MAR10207">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_C02712_e"/>
@@ -424621,10 +423490,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02540e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02540e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10208" sboTerm="SBO:0000627" id="MAR10208" name="Exchange of 13(S)-HPODE" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10208" sboTerm="SBO:0000627" id="R_MAR10208" name="Exchange of 13(S)-HPODE" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -424632,7 +423501,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10208">
+            <rdf:Description rdf:about="#R_MAR10208">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_C04717_e"/>
@@ -424643,10 +423512,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00337e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00337e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10209" sboTerm="SBO:0000627" id="MAR10209" name="Exchange of 5(S)-HETE" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10209" sboTerm="SBO:0000627" id="R_MAR10209" name="Exchange of 5(S)-HETE" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -424654,7 +423523,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10209">
+            <rdf:Description rdf:about="#R_MAR10209">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_C04805_e"/>
@@ -424665,10 +423534,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01040e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01040e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10210" sboTerm="SBO:0000627" id="MAR10210" name="Exchange of Prostaglandin J2" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10210" sboTerm="SBO:0000627" id="R_MAR10210" name="Exchange of Prostaglandin J2" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -424676,7 +423545,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10210">
+            <rdf:Description rdf:about="#R_MAR10210">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_C05957_e"/>
@@ -424687,10 +423556,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02796e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02796e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10211" sboTerm="SBO:0000627" id="MAR10211" name="Exchange of Lipoxin A4" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10211" sboTerm="SBO:0000627" id="R_MAR10211" name="Exchange of Lipoxin A4" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -424698,7 +423567,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10211">
+            <rdf:Description rdf:about="#R_MAR10211">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_C06314_e"/>
@@ -424709,10 +423578,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02395e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02395e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10212" sboTerm="SBO:0000627" id="MAR10212" name="Exchange of Lipoxin B4" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10212" sboTerm="SBO:0000627" id="R_MAR10212" name="Exchange of Lipoxin B4" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -424720,7 +423589,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10212">
+            <rdf:Description rdf:about="#R_MAR10212">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_C06315_e"/>
@@ -424731,10 +423600,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02396e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02396e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10213" sboTerm="SBO:0000627" id="MAR10213" name="Exchange of Anandamide" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10213" sboTerm="SBO:0000627" id="R_MAR10213" name="Exchange of Anandamide" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -424742,7 +423611,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10213">
+            <rdf:Description rdf:about="#R_MAR10213">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_C11695_e"/>
@@ -424753,10 +423622,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01335e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01335e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10214" sboTerm="SBO:0000627" id="MAR10214" name="Exchange of 5, 6-EET" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10214" sboTerm="SBO:0000627" id="R_MAR10214" name="Exchange of 5, 6-EET" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -424764,7 +423633,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10214">
+            <rdf:Description rdf:about="#R_MAR10214">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_C14768_e"/>
@@ -424775,10 +423644,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01054e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01054e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10215" sboTerm="SBO:0000627" id="MAR10215" name="Exchange of 11, 12-EET" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10215" sboTerm="SBO:0000627" id="R_MAR10215" name="Exchange of 11, 12-EET" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -424786,7 +423655,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10215">
+            <rdf:Description rdf:about="#R_MAR10215">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_C14770_e"/>
@@ -424797,10 +423666,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00279e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00279e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10216" sboTerm="SBO:0000627" id="MAR10216" name="Exchange of 14, 15-EET" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10216" sboTerm="SBO:0000627" id="R_MAR10216" name="Exchange of 14, 15-EET" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -424808,7 +423677,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10216">
+            <rdf:Description rdf:about="#R_MAR10216">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_C14771_e"/>
@@ -424819,10 +423688,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00366e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00366e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10217" sboTerm="SBO:0000627" id="MAR10217" name="Exchange of 9 (10)-Epome" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10217" sboTerm="SBO:0000627" id="R_MAR10217" name="Exchange of 9 (10)-Epome" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -424830,7 +423699,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10217">
+            <rdf:Description rdf:about="#R_MAR10217">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_C14825_e"/>
@@ -424841,10 +423710,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01216e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01216e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10218" sboTerm="SBO:0000627" id="MAR10218" name="Exchange of 12 (13)-Epome" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10218" sboTerm="SBO:0000627" id="R_MAR10218" name="Exchange of 12 (13)-Epome" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -424852,7 +423721,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10218">
+            <rdf:Description rdf:about="#R_MAR10218">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_C14826_e"/>
@@ -424863,10 +423732,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00305e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00305e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10219" sboTerm="SBO:0000627" id="MAR10219" name="6-Oxo-Prostaglandin F1Alpha" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10219" sboTerm="SBO:0000627" id="R_MAR10219" name="6-Oxo-Prostaglandin F1Alpha" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -424874,7 +423743,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10219">
+            <rdf:Description rdf:about="#R_MAR10219">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_CE0955_e"/>
@@ -424885,10 +423754,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01168e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01168e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10220" sboTerm="SBO:0000627" id="MAR10220" name="Transport of 5Beta-Cholestane-3Alpha, 7Alpha, 12Alpha, 24S, 25-Pentol, ABC Transport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10220" sboTerm="SBO:0000627" id="R_MAR10220" name="Transport of 5Beta-Cholestane-3Alpha, 7Alpha, 12Alpha, 24S, 25-Pentol, ABC Transport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -424896,7 +423765,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10220">
+            <rdf:Description rdf:about="#R_MAR10220">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_CE1273_e"/>
@@ -424907,10 +423776,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01087e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01087e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10221" sboTerm="SBO:0000627" id="MAR10221" name="Exchange of 8-Dehydrocholesterol" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10221" sboTerm="SBO:0000627" id="R_MAR10221" name="Exchange of 8-Dehydrocholesterol" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -424918,7 +423787,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10221">
+            <rdf:Description rdf:about="#R_MAR10221">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/EX_CE1297[e]"/>
@@ -424928,10 +423797,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03329e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03329e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10222" sboTerm="SBO:0000627" id="MAR10222" name="Exchange of Acetyl-Alanine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10222" sboTerm="SBO:0000627" id="R_MAR10222" name="Exchange of Acetyl-Alanine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -424939,7 +423808,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10222">
+            <rdf:Description rdf:about="#R_MAR10222">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/EX_CE1554[e]"/>
@@ -424949,10 +423818,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02530e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02530e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10223" sboTerm="SBO:0000627" id="MAR10223" name="Exchange of N-Acetyl-L-Asparagine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10223" sboTerm="SBO:0000627" id="R_MAR10223" name="Exchange of N-Acetyl-L-Asparagine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -424960,7 +423829,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10223">
+            <rdf:Description rdf:about="#R_MAR10223">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_CE1556_e"/>
@@ -424971,10 +423840,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02531e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02531e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10224" sboTerm="SBO:0000627" id="MAR10224" name="Exchange of Beta-Hydroxy-Beta-Methylbutyrate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10224" sboTerm="SBO:0000627" id="R_MAR10224" name="Exchange of Beta-Hydroxy-Beta-Methylbutyrate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -424982,7 +423851,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10224">
+            <rdf:Description rdf:about="#R_MAR10224">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_CE2028_e"/>
@@ -424993,10 +423862,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01392e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01392e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10225" sboTerm="SBO:0000627" id="MAR10225" name="Exchange of 3-O-Methyldopa" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10225" sboTerm="SBO:0000627" id="R_MAR10225" name="Exchange of 3-O-Methyldopa" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -425004,7 +423873,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10225">
+            <rdf:Description rdf:about="#R_MAR10225">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_CE2176_e"/>
@@ -425015,10 +423884,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00830e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00830e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10226" sboTerm="SBO:0000627" id="MAR10226" name="Exchange of 6-Trans-Leukotriene B4" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10226" sboTerm="SBO:0000627" id="R_MAR10226" name="Exchange of 6-Trans-Leukotriene B4" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -425026,7 +423895,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10226">
+            <rdf:Description rdf:about="#R_MAR10226">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_CE2445_e"/>
@@ -425037,10 +423906,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01172e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01172e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10227" sboTerm="SBO:0000627" id="MAR10227" name="Exchange of 15-Hydroxy- (8Z, 11Z, 13E)-Eicosatrienoate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10227" sboTerm="SBO:0000627" id="R_MAR10227" name="Exchange of 15-Hydroxy- (8Z, 11Z, 13E)-Eicosatrienoate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -425048,7 +423917,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10227">
+            <rdf:Description rdf:about="#R_MAR10227">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_CE2537_e"/>
@@ -425059,10 +423928,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00378e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00378e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10228" sboTerm="SBO:0000627" id="MAR10228" name="Exchange of Cis, Cis-11, 14-Eicosadienoyl Coenzyme A" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10228" sboTerm="SBO:0000627" id="R_MAR10228" name="Exchange of Cis, Cis-11, 14-Eicosadienoyl Coenzyme A" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -425070,7 +423939,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10228">
+            <rdf:Description rdf:about="#R_MAR10228">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_eidi1114ac_e"/>
@@ -425081,10 +423950,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03569e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03569e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10229" sboTerm="SBO:0000627" id="MAR10229" name="Exchange of 15-Deoxy-Pgd2" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10229" sboTerm="SBO:0000627" id="R_MAR10229" name="Exchange of 15-Deoxy-Pgd2" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -425092,7 +423961,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10229">
+            <rdf:Description rdf:about="#R_MAR10229">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_CE5304_e"/>
@@ -425103,10 +423972,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00384e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00384e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10230" sboTerm="SBO:0000627" id="MAR10230" name="Exchange of Androsterone Sulfate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10230" sboTerm="SBO:0000627" id="R_MAR10230" name="Exchange of Androsterone Sulfate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -425114,7 +423983,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10230">
+            <rdf:Description rdf:about="#R_MAR10230">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_CE6031_e"/>
@@ -425125,10 +423994,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01337e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01337e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10231" sboTerm="SBO:0000627" id="MAR10231" name="Exchange of 5, 12, 20-Trihete" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10231" sboTerm="SBO:0000627" id="R_MAR10231" name="Exchange of 5, 12, 20-Trihete" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -425136,7 +424005,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10231">
+            <rdf:Description rdf:about="#R_MAR10231">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_CE6247_e"/>
@@ -425147,10 +424016,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01047e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01047e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10232" sboTerm="SBO:0000627" id="MAR10232" name="Exchange of 15(S)-HEPE" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10232" sboTerm="SBO:0000627" id="R_MAR10232" name="Exchange of 15(S)-HEPE" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -425158,7 +424027,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10232">
+            <rdf:Description rdf:about="#R_MAR10232">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_CE7082_e"/>
@@ -425169,10 +424038,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00376e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00376e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10233" sboTerm="SBO:0000627" id="MAR10233" name="Exchange of Leukotriene B5" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10233" sboTerm="SBO:0000627" id="R_MAR10233" name="Exchange of Leukotriene B5" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -425180,7 +424049,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10233">
+            <rdf:Description rdf:about="#R_MAR10233">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_CE7083_e"/>
@@ -425191,10 +424060,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02365e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02365e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10234" sboTerm="SBO:0000627" id="MAR10234" name="Exchange of 14, 15-DIHETE" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10234" sboTerm="SBO:0000627" id="R_MAR10234" name="Exchange of 14, 15-DIHETE" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -425202,7 +424071,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10234">
+            <rdf:Description rdf:about="#R_MAR10234">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_CE7172_e"/>
@@ -425213,10 +424082,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00365e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00365e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10235" sboTerm="SBO:0000627" id="MAR10235" name="Exchange of Cortisone" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10235" sboTerm="SBO:0000627" id="R_MAR10235" name="Exchange of Cortisone" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -425224,7 +424093,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10235">
+            <rdf:Description rdf:about="#R_MAR10235">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_cortsn_e"/>
@@ -425235,10 +424104,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01616e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01616e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10236" sboTerm="SBO:0000627" id="MAR10236" name="Exchange of C12:0-Ethanolamide, Didecanoyl Ethanolamide" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10236" sboTerm="SBO:0000627" id="R_MAR10236" name="Exchange of C12:0-Ethanolamide, Didecanoyl Ethanolamide" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -425246,7 +424115,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10236">
+            <rdf:Description rdf:about="#R_MAR10236">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_didecaeth_e"/>
@@ -425257,10 +424126,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03550e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03550e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10237" sboTerm="SBO:0000627" id="MAR10237" name="Exchange of Dihomo-Gamma-Linolenoyl Ethanolamide" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10237" sboTerm="SBO:0000627" id="R_MAR10237" name="Exchange of Dihomo-Gamma-Linolenoyl Ethanolamide" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -425268,7 +424137,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10237">
+            <rdf:Description rdf:about="#R_MAR10237">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_diholineth_e"/>
@@ -425279,10 +424148,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03551e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03551e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10238" sboTerm="SBO:0000627" id="MAR10238" name="Exchange of Docosahexaenoyl Ethanolamide" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10238" sboTerm="SBO:0000627" id="R_MAR10238" name="Exchange of Docosahexaenoyl Ethanolamide" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -425290,7 +424159,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10238">
+            <rdf:Description rdf:about="#R_MAR10238">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_docohxeth_e"/>
@@ -425301,10 +424170,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03558e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03558e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10239" sboTerm="SBO:0000627" id="MAR10239" name="Exchange of Docosatetraenoyl Ethanolamide (22:4, Delta 7, 10, 13, 16)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10239" sboTerm="SBO:0000627" id="R_MAR10239" name="Exchange of Docosatetraenoyl Ethanolamide (22:4, Delta 7, 10, 13, 16)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -425312,7 +424181,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10239">
+            <rdf:Description rdf:about="#R_MAR10239">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_docteteth_e"/>
@@ -425323,10 +424192,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03561e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03561e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10240" sboTerm="SBO:0000627" id="MAR10240" name="Exchange of Dodecanedioic Acid" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10240" sboTerm="SBO:0000627" id="R_MAR10240" name="Exchange of Dodecanedioic Acid" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -425334,7 +424203,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10240">
+            <rdf:Description rdf:about="#R_MAR10240">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_dodecanac_e"/>
@@ -425345,10 +424214,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03562e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03562e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10241" sboTerm="SBO:0000627" id="MAR10241" name="Exchange of Elaidic Carnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10241" sboTerm="SBO:0000627" id="R_MAR10241" name="Exchange of Elaidic Carnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -425356,7 +424225,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10241">
+            <rdf:Description rdf:about="#R_MAR10241">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_elaidcrn_e"/>
@@ -425367,10 +424236,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00126e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00126e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10242" sboTerm="SBO:0000627" id="MAR10242" name="Exchange of N-Formimidoyl-L-Glutamate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10242" sboTerm="SBO:0000627" id="R_MAR10242" name="Exchange of N-Formimidoyl-L-Glutamate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -425378,7 +424247,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10242">
+            <rdf:Description rdf:about="#R_MAR10242">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_forglu_e"/>
@@ -425389,10 +424258,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02574e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02574e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10243" sboTerm="SBO:0000627" id="MAR10243" name="Exchange of Methylmalonate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10243" sboTerm="SBO:0000627" id="R_MAR10243" name="Exchange of Methylmalonate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -425400,7 +424269,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10243">
+            <rdf:Description rdf:about="#R_MAR10243">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_HC00900_e"/>
@@ -425411,10 +424280,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02479e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02479e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10244" sboTerm="SBO:0000627" id="MAR10244" name="Exchange of Heptadecanoyl Thanolamide (C17:0)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10244" sboTerm="SBO:0000627" id="R_MAR10244" name="Exchange of Heptadecanoyl Thanolamide (C17:0)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -425422,7 +424291,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10244">
+            <rdf:Description rdf:about="#R_MAR10244">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_hepdeceth_e"/>
@@ -425433,10 +424302,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03649e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03649e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10245" sboTerm="SBO:0000627" id="MAR10245" name="Exchange of Hexadecenoyl Ethanolamide, C16:1-Ethanolamide (Delta 9)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10245" sboTerm="SBO:0000627" id="R_MAR10245" name="Exchange of Hexadecenoyl Ethanolamide, C16:1-Ethanolamide (Delta 9)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -425444,7 +424313,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10245">
+            <rdf:Description rdf:about="#R_MAR10245">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_hexdeceeth_e"/>
@@ -425455,10 +424324,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03652e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03652e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10246" sboTerm="SBO:0000627" id="MAR10246" name="Exchange of Hexadecanediocacid" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10246" sboTerm="SBO:0000627" id="R_MAR10246" name="Exchange of Hexadecanediocacid" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -425466,7 +424335,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10246">
+            <rdf:Description rdf:about="#R_MAR10246">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_hexdiac_e"/>
@@ -425477,10 +424346,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03654e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03654e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10247" sboTerm="SBO:0000627" id="MAR10247" name="Exchange of Homogentisate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10247" sboTerm="SBO:0000627" id="R_MAR10247" name="Exchange of Homogentisate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -425488,7 +424357,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10247">
+            <rdf:Description rdf:about="#R_MAR10247">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_hgentis_e"/>
@@ -425499,10 +424368,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02135e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02135e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10248" sboTerm="SBO:0000627" id="MAR10248" name="Exchange of Homocarnosine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10248" sboTerm="SBO:0000627" id="R_MAR10248" name="Exchange of Homocarnosine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -425510,7 +424379,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10248">
+            <rdf:Description rdf:about="#R_MAR10248">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_hmcarn_e"/>
@@ -425521,10 +424390,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02132e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02132e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10249" sboTerm="SBO:0000627" id="MAR10249" name="Exchange of Homocitrulline" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10249" sboTerm="SBO:0000627" id="R_MAR10249" name="Exchange of Homocitrulline" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -425532,7 +424401,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10249">
+            <rdf:Description rdf:about="#R_MAR10249">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_hmcr_e"/>
@@ -425543,10 +424412,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03681e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03681e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10250" sboTerm="SBO:0000627" id="MAR10250" name="Exchange of Hexanoate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10250" sboTerm="SBO:0000627" id="R_MAR10250" name="Exchange of Hexanoate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -425554,7 +424423,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10250">
+            <rdf:Description rdf:about="#R_MAR10250">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_hxcoa_e"/>
@@ -425565,10 +424434,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02122e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02122e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10251" sboTerm="SBO:0000627" id="MAR10251" name="Exchange of W-Carboxy Leukotriene B4" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10251" sboTerm="SBO:0000627" id="R_MAR10251" name="Exchange of W-Carboxy Leukotriene B4" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -425576,7 +424445,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10251">
+            <rdf:Description rdf:about="#R_MAR10251">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_leuktrB4wcooh_e"/>
@@ -425587,10 +424456,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00585e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00585e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10252" sboTerm="SBO:0000627" id="MAR10252" name="Exchnage for W-Hydroxyl Leukotriene B4" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10252" sboTerm="SBO:0000627" id="R_MAR10252" name="Exchnage for W-Hydroxyl Leukotriene B4" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -425598,7 +424467,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10252">
+            <rdf:Description rdf:about="#R_MAR10252">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_leuktrB4woh_e"/>
@@ -425609,10 +424478,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00599e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00599e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10253" sboTerm="SBO:0000627" id="MAR10253" name="Exchange of Linoleoyl Ethanolamide" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10253" sboTerm="SBO:0000627" id="R_MAR10253" name="Exchange of Linoleoyl Ethanolamide" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -425620,7 +424489,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10253">
+            <rdf:Description rdf:about="#R_MAR10253">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_lineth_e"/>
@@ -425631,10 +424500,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03724e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03724e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10254" sboTerm="SBO:0000627" id="MAR10254" name="Exchange of Linoleyl Carnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10254" sboTerm="SBO:0000627" id="R_MAR10254" name="Exchange of Linoleyl Carnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -425642,7 +424511,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10254">
+            <rdf:Description rdf:about="#R_MAR10254">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_lnlccrn_e"/>
@@ -425653,10 +424522,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02388e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02388e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10255" sboTerm="SBO:0000627" id="MAR10255" name="Exchange of L-Pipecolic Acid" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10255" sboTerm="SBO:0000627" id="R_MAR10255" name="Exchange of L-Pipecolic Acid" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -425664,7 +424533,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10255">
+            <rdf:Description rdf:about="#R_MAR10255">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_Lpipecol_e"/>
@@ -425675,10 +424544,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02413e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02413e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10256" sboTerm="SBO:0000627" id="MAR10256" name="Exchange of Lathosterol" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10256" sboTerm="SBO:0000627" id="R_MAR10256" name="Exchange of Lathosterol" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -425686,7 +424555,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10256">
+            <rdf:Description rdf:about="#R_MAR10256">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_lthstrl_e"/>
@@ -425697,10 +424566,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02343e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02343e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10257" sboTerm="SBO:0000627" id="MAR10257" name="Exchange of 1-Arachidonoyl Glycerol" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10257" sboTerm="SBO:0000627" id="R_MAR10257" name="Exchange of 1-Arachidonoyl Glycerol" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -425708,7 +424577,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10257">
+            <rdf:Description rdf:about="#R_MAR10257">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_magarachi_hs_e"/>
@@ -425719,10 +424588,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03751e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03751e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10258" sboTerm="SBO:0000627" id="MAR10258" name="Exchange of 1-Linoleoylglycerol" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10258" sboTerm="SBO:0000627" id="R_MAR10258" name="Exchange of 1-Linoleoylglycerol" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -425730,7 +424599,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10258">
+            <rdf:Description rdf:about="#R_MAR10258">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_maglinl_hs_e"/>
@@ -425741,10 +424610,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03752e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03752e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10259" sboTerm="SBO:0000627" id="MAR10259" name="Exchange of 1-Oleoylglycerol" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10259" sboTerm="SBO:0000627" id="R_MAR10259" name="Exchange of 1-Oleoylglycerol" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -425752,7 +424621,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10259">
+            <rdf:Description rdf:about="#R_MAR10259">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_magole_hs_e"/>
@@ -425763,10 +424632,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03753e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03753e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10260" sboTerm="SBO:0000627" id="MAR10260" name="Exchange of 1-Palmitoylglycerol" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10260" sboTerm="SBO:0000627" id="R_MAR10260" name="Exchange of 1-Palmitoylglycerol" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -425774,7 +424643,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10260">
+            <rdf:Description rdf:about="#R_MAR10260">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_magpalm_hs_e"/>
@@ -425785,10 +424654,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03754e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03754e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10261" sboTerm="SBO:0000627" id="MAR10261" name="Exchange of 1-Stearoylglycerol" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10261" sboTerm="SBO:0000627" id="R_MAR10261" name="Exchange of 1-Stearoylglycerol" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -425796,7 +424665,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10261">
+            <rdf:Description rdf:about="#R_MAR10261">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_magste_hs_e"/>
@@ -425807,10 +424676,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03755e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03755e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10262" sboTerm="SBO:0000627" id="MAR10262" name="Exchange of (R)-Mevalonate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10262" sboTerm="SBO:0000627" id="R_MAR10262" name="Exchange of (R)-Mevalonate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -425818,7 +424687,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10262">
+            <rdf:Description rdf:about="#R_MAR10262">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_mev__R_e"/>
@@ -425829,10 +424698,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00167e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00167e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10263" sboTerm="SBO:0000627" id="MAR10263" name="Exchange of Myo-Inositol 1-Phosphate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10263" sboTerm="SBO:0000627" id="R_MAR10263" name="Exchange of Myo-Inositol 1-Phosphate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -425840,7 +424709,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10263">
+            <rdf:Description rdf:about="#R_MAR10263">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_mi1p__D_e"/>
@@ -425851,10 +424720,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02173e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02173e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10264" sboTerm="SBO:0000627" id="MAR10264" name="Exchange of N-Acetyl-L-Aspartate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10264" sboTerm="SBO:0000627" id="R_MAR10264" name="Exchange of N-Acetyl-L-Aspartate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -425862,7 +424731,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10264">
+            <rdf:Description rdf:about="#R_MAR10264">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_Nacasp_e"/>
@@ -425873,10 +424742,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02532e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02532e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10265" sboTerm="SBO:0000627" id="MAR10265" name="Exchange of N- (Omega)-Hydroxyarginine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10265" sboTerm="SBO:0000627" id="R_MAR10265" name="Exchange of N- (Omega)-Hydroxyarginine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -425884,7 +424753,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10265">
+            <rdf:Description rdf:about="#R_MAR10265">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_nwharg_e"/>
@@ -425895,10 +424764,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02497e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02497e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10266" sboTerm="SBO:0000627" id="MAR10266" name="Exchange of Oleoyl Ethanolamide" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10266" sboTerm="SBO:0000627" id="R_MAR10266" name="Exchange of Oleoyl Ethanolamide" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -425906,7 +424775,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10266">
+            <rdf:Description rdf:about="#R_MAR10266">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_oleth_e"/>
@@ -425917,10 +424786,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03796e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03796e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10267" sboTerm="SBO:0000627" id="MAR10267" name="Exchange of 1-Arachidonoylglycerophosphoinositol" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10267" sboTerm="SBO:0000627" id="R_MAR10267" name="Exchange of 1-Arachidonoylglycerophosphoinositol" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -425928,7 +424797,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10267">
+            <rdf:Description rdf:about="#R_MAR10267">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_pailar_hs_e"/>
@@ -425939,10 +424808,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03802e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03802e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10268" sboTerm="SBO:0000627" id="MAR10268" name="Exchange of 1-Palmitoylglycerophosphoinositol" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10268" sboTerm="SBO:0000627" id="R_MAR10268" name="Exchange of 1-Palmitoylglycerophosphoinositol" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -425950,7 +424819,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10268">
+            <rdf:Description rdf:about="#R_MAR10268">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_pailpalm_hs_e"/>
@@ -425961,10 +424830,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03803e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03803e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10269" sboTerm="SBO:0000627" id="MAR10269" name="Exchange of 1-Stearoylglycerophosphoinositol" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10269" sboTerm="SBO:0000627" id="R_MAR10269" name="Exchange of 1-Stearoylglycerophosphoinositol" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -425972,7 +424841,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10269">
+            <rdf:Description rdf:about="#R_MAR10269">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_pailste_hs_e"/>
@@ -425983,10 +424852,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03804e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03804e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10270" sboTerm="SBO:0000627" id="MAR10270" name="Exchange of 2-Linoleoylglycerophosphocholine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10270" sboTerm="SBO:0000627" id="R_MAR10270" name="Exchange of 2-Linoleoylglycerophosphocholine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -425994,7 +424863,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10270">
+            <rdf:Description rdf:about="#R_MAR10270">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_pchol2linl_hs_e"/>
@@ -426005,10 +424874,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03805e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03805e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10271" sboTerm="SBO:0000627" id="MAR10271" name="Exchange of 2-Oleoylglycerophosphocholine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10271" sboTerm="SBO:0000627" id="R_MAR10271" name="Exchange of 2-Oleoylglycerophosphocholine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -426016,7 +424885,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10271">
+            <rdf:Description rdf:about="#R_MAR10271">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_pchol2ole_hs_e"/>
@@ -426027,10 +424896,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03806e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03806e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10272" sboTerm="SBO:0000627" id="MAR10272" name="Exchange of 2-Palmitoylglycerophosphocholine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10272" sboTerm="SBO:0000627" id="R_MAR10272" name="Exchange of 2-Palmitoylglycerophosphocholine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -426038,7 +424907,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10272">
+            <rdf:Description rdf:about="#R_MAR10272">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_pchol2palm_hs_e"/>
@@ -426049,10 +424918,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03807e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03807e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10273" sboTerm="SBO:0000627" id="MAR10273" name="Exchange of 2-Stearoylglycerophosphocholine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10273" sboTerm="SBO:0000627" id="R_MAR10273" name="Exchange of 2-Stearoylglycerophosphocholine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -426060,7 +424929,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10273">
+            <rdf:Description rdf:about="#R_MAR10273">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_pchol2ste_hs_e"/>
@@ -426071,10 +424940,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03808e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03808e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10274" sboTerm="SBO:0000627" id="MAR10274" name="Exchange of 1-Arachidonoyl-Glycero-3-Phosphocholine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10274" sboTerm="SBO:0000627" id="R_MAR10274" name="Exchange of 1-Arachidonoyl-Glycero-3-Phosphocholine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -426082,7 +424951,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10274">
+            <rdf:Description rdf:about="#R_MAR10274">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_pcholar_hs_e"/>
@@ -426093,10 +424962,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03809e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03809e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10275" sboTerm="SBO:0000627" id="MAR10275" name="Exchange of 1-Docosahexaenoylglycerophosphocholine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10275" sboTerm="SBO:0000627" id="R_MAR10275" name="Exchange of 1-Docosahexaenoylglycerophosphocholine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -426104,7 +424973,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10275">
+            <rdf:Description rdf:about="#R_MAR10275">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_pcholdoc_hs_e"/>
@@ -426115,10 +424984,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03810e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03810e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10276" sboTerm="SBO:0000627" id="MAR10276" name="Exchange of 1-Eicosadienoylglycerophosphocholine (Delta 11, 14)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10276" sboTerm="SBO:0000627" id="R_MAR10276" name="Exchange of 1-Eicosadienoylglycerophosphocholine (Delta 11, 14)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -426126,7 +424995,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10276">
+            <rdf:Description rdf:about="#R_MAR10276">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_pcholeic_hs_e"/>
@@ -426137,10 +425006,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03811e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03811e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10277" sboTerm="SBO:0000627" id="MAR10277" name="Exchange of 1-Eicosatrienoylglycerophosphocholine (Delta 11, 14, 17)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10277" sboTerm="SBO:0000627" id="R_MAR10277" name="Exchange of 1-Eicosatrienoylglycerophosphocholine (Delta 11, 14, 17)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -426148,7 +425017,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10277">
+            <rdf:Description rdf:about="#R_MAR10277">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_pcholet_hs_e"/>
@@ -426159,10 +425028,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03812e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03812e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10278" sboTerm="SBO:0000627" id="MAR10278" name="Exchange of 1-Heptadecanoylglycerophosphocholine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10278" sboTerm="SBO:0000627" id="R_MAR10278" name="Exchange of 1-Heptadecanoylglycerophosphocholine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -426170,7 +425039,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10278">
+            <rdf:Description rdf:about="#R_MAR10278">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_pcholhep_hs_e"/>
@@ -426181,10 +425050,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03813e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03813e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10279" sboTerm="SBO:0000627" id="MAR10279" name="Exchange of 1-Linoleoylglycerophosphocholine (Delta 9, 12)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10279" sboTerm="SBO:0000627" id="R_MAR10279" name="Exchange of 1-Linoleoylglycerophosphocholine (Delta 9, 12)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -426192,7 +425061,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10279">
+            <rdf:Description rdf:about="#R_MAR10279">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_pchollinl_hs_e"/>
@@ -426203,10 +425072,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03814e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03814e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10280" sboTerm="SBO:0000627" id="MAR10280" name="Exchange of 1-Myristoylglycerophosphocholine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10280" sboTerm="SBO:0000627" id="R_MAR10280" name="Exchange of 1-Myristoylglycerophosphocholine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -426214,7 +425083,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10280">
+            <rdf:Description rdf:about="#R_MAR10280">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_pcholmyr_hs_e"/>
@@ -426225,10 +425094,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03815e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03815e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10281" sboTerm="SBO:0000627" id="MAR10281" name="Exchange of 1-Pentadecanoylglycerophosphocholine, Sn1-Lpc (15:0)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10281" sboTerm="SBO:0000627" id="R_MAR10281" name="Exchange of 1-Pentadecanoylglycerophosphocholine, Sn1-Lpc (15:0)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -426236,7 +425105,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10281">
+            <rdf:Description rdf:about="#R_MAR10281">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_pcholn15_hs_e"/>
@@ -426247,10 +425116,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03816e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03816e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10282" sboTerm="SBO:0000627" id="MAR10282" name="Exchange of 1-Octadeca-Trienoylglycerophosphocholine, Sn1-Lpc (18:3, Delta 9, 12, 15)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10282" sboTerm="SBO:0000627" id="R_MAR10282" name="Exchange of 1-Octadeca-Trienoylglycerophosphocholine, Sn1-Lpc (18:3, Delta 9, 12, 15)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -426258,7 +425127,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10282">
+            <rdf:Description rdf:about="#R_MAR10282">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_pcholn183_hs_e"/>
@@ -426269,10 +425138,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03818e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03818e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10283" sboTerm="SBO:0000627" id="MAR10283" name="Exchange of 1-Octadeca-Trienoylglycerophosphocholine, Sn1-Lpc (18:3, Delta 6, 9, 12)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10283" sboTerm="SBO:0000627" id="R_MAR10283" name="Exchange of 1-Octadeca-Trienoylglycerophosphocholine, Sn1-Lpc (18:3, Delta 6, 9, 12)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -426280,7 +425149,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10283">
+            <rdf:Description rdf:about="#R_MAR10283">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_pcholn1836_hs_e"/>
@@ -426291,10 +425160,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03817e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03817e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10284" sboTerm="SBO:0000627" id="MAR10284" name="Exchange of 1-NoNADecanoylglycerophosphocholine, Sn1-Lpc (19:0)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10284" sboTerm="SBO:0000627" id="R_MAR10284" name="Exchange of 1-NoNADecanoylglycerophosphocholine, Sn1-Lpc (19:0)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -426302,7 +425171,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10284">
+            <rdf:Description rdf:about="#R_MAR10284">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_pcholn19_hs_e"/>
@@ -426313,10 +425182,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03819e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03819e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10285" sboTerm="SBO:0000627" id="MAR10285" name="Exchange of 1-Eicosenoylglycerophosphocholine (Delta 11) , Sn1-Lpc (20:1)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10285" sboTerm="SBO:0000627" id="R_MAR10285" name="Exchange of 1-Eicosenoylglycerophosphocholine (Delta 11) , Sn1-Lpc (20:1)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -426324,7 +425193,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10285">
+            <rdf:Description rdf:about="#R_MAR10285">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_pcholn201_hs_e"/>
@@ -426335,10 +425204,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03820e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03820e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10286" sboTerm="SBO:0000627" id="MAR10286" name="Exchange of 1-Dihomo-Linolenoylglycerophosphocholine (20:3, Delta 8, 11, 14), Lysopc A C20:3" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10286" sboTerm="SBO:0000627" id="R_MAR10286" name="Exchange of 1-Dihomo-Linolenoylglycerophosphocholine (20:3, Delta 8, 11, 14), Lysopc A C20:3" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -426346,7 +425215,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10286">
+            <rdf:Description rdf:about="#R_MAR10286">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_pcholn203_hs_e"/>
@@ -426357,10 +425226,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03821e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03821e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10287" sboTerm="SBO:0000627" id="MAR10287" name="Exchange of 1-Eicosatetraenoylglycerophosphocholine (Delta 8, 11, 14, 17), Sn1-Lpc (20:4)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10287" sboTerm="SBO:0000627" id="R_MAR10287" name="Exchange of 1-Eicosatetraenoylglycerophosphocholine (Delta 8, 11, 14, 17), Sn1-Lpc (20:4)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -426368,7 +425237,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10287">
+            <rdf:Description rdf:about="#R_MAR10287">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_pcholn204_hs_e"/>
@@ -426379,10 +425248,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03822e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03822e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10288" sboTerm="SBO:0000627" id="MAR10288" name="Exchange of 1-Eicosapentenoylglycerophosphocholine (Delta 5, 8, 11, 14, 17), Sn1-Lpc (20:5)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10288" sboTerm="SBO:0000627" id="R_MAR10288" name="Exchange of 1-Eicosapentenoylglycerophosphocholine (Delta 5, 8, 11, 14, 17), Sn1-Lpc (20:5)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -426390,7 +425259,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10288">
+            <rdf:Description rdf:about="#R_MAR10288">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_pcholn205_hs_e"/>
@@ -426401,10 +425270,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03823e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03823e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10289" sboTerm="SBO:0000627" id="MAR10289" name="Exchange of 1-Docosatetraenoylglycerophosphocholine (Delta 7, 10, 13, 16), Sn1-Lpc (22:4)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10289" sboTerm="SBO:0000627" id="R_MAR10289" name="Exchange of 1-Docosatetraenoylglycerophosphocholine (Delta 7, 10, 13, 16), Sn1-Lpc (22:4)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -426412,7 +425281,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10289">
+            <rdf:Description rdf:about="#R_MAR10289">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_pcholn224_hs_e"/>
@@ -426423,10 +425292,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03824e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03824e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10290" sboTerm="SBO:0000627" id="MAR10290" name="Exchange of 1-Docosapentenoylglycerophosphocholine (Delta 7, 10, 13, 16, 19), Sn1-Lpc (22:5)-W3" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10290" sboTerm="SBO:0000627" id="R_MAR10290" name="Exchange of 1-Docosapentenoylglycerophosphocholine (Delta 7, 10, 13, 16, 19), Sn1-Lpc (22:5)-W3" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -426434,7 +425303,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10290">
+            <rdf:Description rdf:about="#R_MAR10290">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_pcholn225_hs_e"/>
@@ -426445,10 +425314,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03826e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03826e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10291" sboTerm="SBO:0000627" id="MAR10291" name="Exchange of 1-Docosapentenoylglycerophosphocholine (Delta 4, 7, 10, 13, 16), Sn1-Lpc (22:5)-W6" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10291" sboTerm="SBO:0000627" id="R_MAR10291" name="Exchange of 1-Docosapentenoylglycerophosphocholine (Delta 4, 7, 10, 13, 16), Sn1-Lpc (22:5)-W6" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -426456,7 +425325,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10291">
+            <rdf:Description rdf:about="#R_MAR10291">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_pcholn2254_hs_e"/>
@@ -426467,10 +425336,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03825e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03825e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10292" sboTerm="SBO:0000627" id="MAR10292" name="Exchange of 1-Docosahexenoylglycerophosphocholine (Delta 4, 7, 10, 13, 16, 19), Sn1-Lpc (22:6)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10292" sboTerm="SBO:0000627" id="R_MAR10292" name="Exchange of 1-Docosahexenoylglycerophosphocholine (Delta 4, 7, 10, 13, 16, 19), Sn1-Lpc (22:6)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -426478,7 +425347,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10292">
+            <rdf:Description rdf:about="#R_MAR10292">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_pcholn226_hs_e"/>
@@ -426489,10 +425358,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03827e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03827e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10293" sboTerm="SBO:0000627" id="MAR10293" name="Exchange of 1-Lignocericylglycerophosphocholine (24:0), Lysopc A C24" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10293" sboTerm="SBO:0000627" id="R_MAR10293" name="Exchange of 1-Lignocericylglycerophosphocholine (24:0), Lysopc A C24" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -426500,7 +425369,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10293">
+            <rdf:Description rdf:about="#R_MAR10293">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_pcholn24_hs_e"/>
@@ -426511,10 +425380,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03828e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03828e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10294" sboTerm="SBO:0000627" id="MAR10294" name="Exchange of Lysopc A C26:1 (Delta 5)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10294" sboTerm="SBO:0000627" id="R_MAR10294" name="Exchange of Lysopc A C26:1 (Delta 5)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -426522,7 +425391,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10294">
+            <rdf:Description rdf:about="#R_MAR10294">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_pcholn261_hs_e"/>
@@ -426533,10 +425402,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03829e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03829e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10295" sboTerm="SBO:0000627" id="MAR10295" name="Exchange of Lysopc A C28:0" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10295" sboTerm="SBO:0000627" id="R_MAR10295" name="Exchange of Lysopc A C28:0" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -426544,7 +425413,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10295">
+            <rdf:Description rdf:about="#R_MAR10295">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_pcholn28_hs_e"/>
@@ -426555,10 +425424,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03831e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03831e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10296" sboTerm="SBO:0000627" id="MAR10296" name="Exchange of Lysopc A C28:1 (Delta 5)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10296" sboTerm="SBO:0000627" id="R_MAR10296" name="Exchange of Lysopc A C28:1 (Delta 5)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -426566,7 +425435,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10296">
+            <rdf:Description rdf:about="#R_MAR10296">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_pcholn281_hs_e"/>
@@ -426577,10 +425446,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03830e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03830e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10297" sboTerm="SBO:0000627" id="MAR10297" name="Exchange of 1-Oleoylglycerophosphocholine (Delta 9)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10297" sboTerm="SBO:0000627" id="R_MAR10297" name="Exchange of 1-Oleoylglycerophosphocholine (Delta 9)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -426588,7 +425457,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10297">
+            <rdf:Description rdf:about="#R_MAR10297">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_pcholole_hs_e"/>
@@ -426599,10 +425468,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03832e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03832e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10298" sboTerm="SBO:0000627" id="MAR10298" name="Exchange of 1-Palmitoylglycerophosphocholine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10298" sboTerm="SBO:0000627" id="R_MAR10298" name="Exchange of 1-Palmitoylglycerophosphocholine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -426610,7 +425479,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10298">
+            <rdf:Description rdf:about="#R_MAR10298">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_pcholpalm_hs_e"/>
@@ -426621,10 +425490,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03833e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03833e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10299" sboTerm="SBO:0000627" id="MAR10299" name="Exchange of 1-Palmitoleoylglycerophosphocholine (Delta 9)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10299" sboTerm="SBO:0000627" id="R_MAR10299" name="Exchange of 1-Palmitoleoylglycerophosphocholine (Delta 9)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -426632,7 +425501,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10299">
+            <rdf:Description rdf:about="#R_MAR10299">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_pcholpalme_hs_e"/>
@@ -426643,10 +425512,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03834e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03834e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10300" sboTerm="SBO:0000627" id="MAR10300" name="Exchange of 1-Stearoylglycerophosphocholine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10300" sboTerm="SBO:0000627" id="R_MAR10300" name="Exchange of 1-Stearoylglycerophosphocholine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -426654,7 +425523,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10300">
+            <rdf:Description rdf:about="#R_MAR10300">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_pcholste_hs_e"/>
@@ -426665,10 +425534,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03835e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03835e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10301" sboTerm="SBO:0000627" id="MAR10301" name="Exchange of Erythro-5-Hydroxy-L-Lysinium" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10301" sboTerm="SBO:0000627" id="R_MAR10301" name="Exchange of Erythro-5-Hydroxy-L-Lysinium" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -426676,7 +425545,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10301">
+            <rdf:Description rdf:about="#R_MAR10301">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_pcollg5hlys_e"/>
@@ -426687,10 +425556,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02381e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02381e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10302" sboTerm="SBO:0000627" id="MAR10302" name="Exchange of 1-Didecanoylglycerophosphoethanolamine (C12:0 Pe)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10302" sboTerm="SBO:0000627" id="R_MAR10302" name="Exchange of 1-Didecanoylglycerophosphoethanolamine (C12:0 Pe)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -426698,7 +425567,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10302">
+            <rdf:Description rdf:about="#R_MAR10302">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_pe12_hs_e"/>
@@ -426709,10 +425578,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03838e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03838e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10303" sboTerm="SBO:0000627" id="MAR10303" name="Exchange of 1-Tridecanoylglycerophosphoethanolamine (C13:0 Pe)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10303" sboTerm="SBO:0000627" id="R_MAR10303" name="Exchange of 1-Tridecanoylglycerophosphoethanolamine (C13:0 Pe)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -426720,7 +425589,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10303">
+            <rdf:Description rdf:about="#R_MAR10303">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_pe13_hs_e"/>
@@ -426731,10 +425600,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03839e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03839e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10304" sboTerm="SBO:0000627" id="MAR10304" name="Exchange of 1-Myristoylglycerophosphoethanolamine (C14:0 Pe)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10304" sboTerm="SBO:0000627" id="R_MAR10304" name="Exchange of 1-Myristoylglycerophosphoethanolamine (C14:0 Pe)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -426742,7 +425611,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10304">
+            <rdf:Description rdf:about="#R_MAR10304">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_pe14_hs_e"/>
@@ -426753,10 +425622,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03840e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03840e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10305" sboTerm="SBO:0000627" id="MAR10305" name="Exchange of 1-Pentadecanoylglycerophosphoethanolamine (C15:0 Pe)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10305" sboTerm="SBO:0000627" id="R_MAR10305" name="Exchange of 1-Pentadecanoylglycerophosphoethanolamine (C15:0 Pe)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -426764,7 +425633,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10305">
+            <rdf:Description rdf:about="#R_MAR10305">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_pe15_hs_e"/>
@@ -426775,10 +425644,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03841e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03841e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10306" sboTerm="SBO:0000627" id="MAR10306" name="Exchange of 1-Hexadecenoylglycerophosphoethanolamine (C16:1 Pe, Delta 9)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10306" sboTerm="SBO:0000627" id="R_MAR10306" name="Exchange of 1-Hexadecenoylglycerophosphoethanolamine (C16:1 Pe, Delta 9)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -426786,7 +425655,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10306">
+            <rdf:Description rdf:about="#R_MAR10306">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_pe161_hs_e"/>
@@ -426797,10 +425666,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03842e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03842e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10307" sboTerm="SBO:0000627" id="MAR10307" name="Exchange of 1-Heptadecanoylglycerophosphoethanolamine (C17:0 Pe)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10307" sboTerm="SBO:0000627" id="R_MAR10307" name="Exchange of 1-Heptadecanoylglycerophosphoethanolamine (C17:0 Pe)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -426808,7 +425677,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10307">
+            <rdf:Description rdf:about="#R_MAR10307">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_pe17_hs_e"/>
@@ -426819,10 +425688,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03843e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03843e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10308" sboTerm="SBO:0000627" id="MAR10308" name="Exchange of 1-Eicosatrienoylglycerophosphoethanolamine (Delta 11, 14, 17), Lpe (20:3)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10308" sboTerm="SBO:0000627" id="R_MAR10308" name="Exchange of 1-Eicosatrienoylglycerophosphoethanolamine (Delta 11, 14, 17), Lpe (20:3)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -426830,7 +425699,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10308">
+            <rdf:Description rdf:about="#R_MAR10308">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_pe203_hs_e"/>
@@ -426841,10 +425710,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03844e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03844e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10309" sboTerm="SBO:0000627" id="MAR10309" name="Exchange of 1-Docosatetraenoyglycerophosphoethanolamine (22:4, Delta 7, 10, 13, 16)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10309" sboTerm="SBO:0000627" id="R_MAR10309" name="Exchange of 1-Docosatetraenoyglycerophosphoethanolamine (22:4, Delta 7, 10, 13, 16)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -426852,7 +425721,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10309">
+            <rdf:Description rdf:about="#R_MAR10309">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_pe224_hs_e"/>
@@ -426863,10 +425732,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03845e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03845e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10310" sboTerm="SBO:0000627" id="MAR10310" name="Exchange of 1-Docosahexenoylglyceroethanolamine (Delta 4, 7, 10, 13, 16, 19), Lpe (22:6)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10310" sboTerm="SBO:0000627" id="R_MAR10310" name="Exchange of 1-Docosahexenoylglyceroethanolamine (Delta 4, 7, 10, 13, 16, 19), Lpe (22:6)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -426874,7 +425743,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10310">
+            <rdf:Description rdf:about="#R_MAR10310">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_pe226_hs_e"/>
@@ -426885,10 +425754,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03846e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03846e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10311" sboTerm="SBO:0000627" id="MAR10311" name="Exchange of 2-Linoleoylglycerophosphoethanolamine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10311" sboTerm="SBO:0000627" id="R_MAR10311" name="Exchange of 2-Linoleoylglycerophosphoethanolamine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -426896,7 +425765,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10311">
+            <rdf:Description rdf:about="#R_MAR10311">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_pe2linl_hs_e"/>
@@ -426907,10 +425776,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03847e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03847e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10312" sboTerm="SBO:0000627" id="MAR10312" name="Exchange of 1-Arachidonoyl-Sn-Glycero-3-Phosphoethanolamine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10312" sboTerm="SBO:0000627" id="R_MAR10312" name="Exchange of 1-Arachidonoyl-Sn-Glycero-3-Phosphoethanolamine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -426918,7 +425787,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10312">
+            <rdf:Description rdf:about="#R_MAR10312">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_pear_hs_e"/>
@@ -426929,10 +425798,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03848e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03848e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10313" sboTerm="SBO:0000627" id="MAR10313" name="Exchange of 1-Dihomo-Linolenoylglycerophosphoethanolamine (20:3, Delta 8, 11, 14)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10313" sboTerm="SBO:0000627" id="R_MAR10313" name="Exchange of 1-Dihomo-Linolenoylglycerophosphoethanolamine (20:3, Delta 8, 11, 14)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -426940,7 +425809,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10313">
+            <rdf:Description rdf:about="#R_MAR10313">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_pedh203_hs_e"/>
@@ -426951,10 +425820,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03855e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03855e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10314" sboTerm="SBO:0000627" id="MAR10314" name="Exchange of 1-Linoleoylglycerophosphoethanolamine (Delta 9, 12)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10314" sboTerm="SBO:0000627" id="R_MAR10314" name="Exchange of 1-Linoleoylglycerophosphoethanolamine (Delta 9, 12)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -426962,7 +425831,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10314">
+            <rdf:Description rdf:about="#R_MAR10314">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_pelinl_hs_e"/>
@@ -426973,10 +425842,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03856e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03856e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10315" sboTerm="SBO:0000627" id="MAR10315" name="Exchange of Pentadecanoyl Thanolamide (C15:0)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10315" sboTerm="SBO:0000627" id="R_MAR10315" name="Exchange of Pentadecanoyl Thanolamide (C15:0)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -426984,7 +425853,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10315">
+            <rdf:Description rdf:about="#R_MAR10315">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_pendecaeth_e"/>
@@ -426995,10 +425864,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03857e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03857e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10316" sboTerm="SBO:0000627" id="MAR10316" name="Exchange of 1-Oleoylglycerophosphoethanolamine (Delta 9)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10316" sboTerm="SBO:0000627" id="R_MAR10316" name="Exchange of 1-Oleoylglycerophosphoethanolamine (Delta 9)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -427006,7 +425875,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10316">
+            <rdf:Description rdf:about="#R_MAR10316">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_peole_hs_e"/>
@@ -427017,10 +425886,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03859e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03859e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10317" sboTerm="SBO:0000627" id="MAR10317" name="Exchange of 1-Palmitoylglycerophosphoethanolamine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10317" sboTerm="SBO:0000627" id="R_MAR10317" name="Exchange of 1-Palmitoylglycerophosphoethanolamine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -427028,7 +425897,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10317">
+            <rdf:Description rdf:about="#R_MAR10317">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_pepalm_hs_e"/>
@@ -427039,10 +425908,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03860e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03860e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10318" sboTerm="SBO:0000627" id="MAR10318" name="Exchange of 1-Stearoylglycerophosphoethanolamine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10318" sboTerm="SBO:0000627" id="R_MAR10318" name="Exchange of 1-Stearoylglycerophosphoethanolamine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -427050,7 +425919,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10318">
+            <rdf:Description rdf:about="#R_MAR10318">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_peste_hs_e"/>
@@ -427061,10 +425930,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03861e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03861e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10319" sboTerm="SBO:0000627" id="MAR10319" name="Exchange of Palmitoylethanolamide" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10319" sboTerm="SBO:0000627" id="R_MAR10319" name="Exchange of Palmitoylethanolamide" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -427072,7 +425941,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10319">
+            <rdf:Description rdf:about="#R_MAR10319">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_pmeth_e"/>
@@ -427083,10 +425952,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03885e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03885e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10320" sboTerm="SBO:0000627" id="MAR10320" name="Exchange of L-Saccharopinate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10320" sboTerm="SBO:0000627" id="R_MAR10320" name="Exchange of L-Saccharopinate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -427094,7 +425963,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10320">
+            <rdf:Description rdf:about="#R_MAR10320">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_saccrp__L_e"/>
@@ -427105,10 +425974,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02868e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02868e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10321" sboTerm="SBO:0000627" id="MAR10321" name="Exchange of Sebacic Acid" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10321" sboTerm="SBO:0000627" id="R_MAR10321" name="Exchange of Sebacic Acid" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -427116,7 +425985,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10321">
+            <rdf:Description rdf:about="#R_MAR10321">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_sebacid_e"/>
@@ -427127,10 +425996,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03923e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03923e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10322" sboTerm="SBO:0000627" id="MAR10322" name="Exchange of Sphingomyelin (D18:0/24:1)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10322" sboTerm="SBO:0000627" id="R_MAR10322" name="Exchange of Sphingomyelin (D18:0/24:1)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -427138,7 +426007,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10322">
+            <rdf:Description rdf:about="#R_MAR10322">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_sphmyln180241_hs_e"/>
@@ -427149,10 +426018,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03936e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03936e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10323" sboTerm="SBO:0000627" id="MAR10323" name="Exchange of Sphingomyelin (D18:1/14:0)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10323" sboTerm="SBO:0000627" id="R_MAR10323" name="Exchange of Sphingomyelin (D18:1/14:0)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -427160,7 +426029,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10323">
+            <rdf:Description rdf:about="#R_MAR10323">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_sphmyln18114_hs_e"/>
@@ -427171,10 +426040,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03937e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03937e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10324" sboTerm="SBO:0000627" id="MAR10324" name="Exchange of Sphingomyelin (D18:1/15:0)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10324" sboTerm="SBO:0000627" id="R_MAR10324" name="Exchange of Sphingomyelin (D18:1/15:0)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -427182,7 +426051,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10324">
+            <rdf:Description rdf:about="#R_MAR10324">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_sphmyln18115_hs_e"/>
@@ -427193,10 +426062,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03938e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03938e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10325" sboTerm="SBO:0000627" id="MAR10325" name="Exchange of Sphingomyelin (D18:1/16:0)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10325" sboTerm="SBO:0000627" id="R_MAR10325" name="Exchange of Sphingomyelin (D18:1/16:0)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -427204,7 +426073,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10325">
+            <rdf:Description rdf:about="#R_MAR10325">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_sphmyln18116_hs_e"/>
@@ -427215,10 +426084,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03940e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03940e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10326" sboTerm="SBO:0000627" id="MAR10326" name="Exchange of Sphingomyelin (D18:1/16:1)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10326" sboTerm="SBO:0000627" id="R_MAR10326" name="Exchange of Sphingomyelin (D18:1/16:1)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -427226,7 +426095,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10326">
+            <rdf:Description rdf:about="#R_MAR10326">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_sphmyln181161_hs_e"/>
@@ -427237,10 +426106,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03939e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03939e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10327" sboTerm="SBO:0000627" id="MAR10327" name="Exchange of Sphingomyelin (D18:1/17:0)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10327" sboTerm="SBO:0000627" id="R_MAR10327" name="Exchange of Sphingomyelin (D18:1/17:0)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -427248,7 +426117,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10327">
+            <rdf:Description rdf:about="#R_MAR10327">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_sphmyln18117_hs_e"/>
@@ -427259,10 +426128,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03941e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03941e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10328" sboTerm="SBO:0000627" id="MAR10328" name="Exchange of Sphingomyelin (D18:1/18:0)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10328" sboTerm="SBO:0000627" id="R_MAR10328" name="Exchange of Sphingomyelin (D18:1/18:0)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -427270,7 +426139,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10328">
+            <rdf:Description rdf:about="#R_MAR10328">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_sphmyln18118_hs_e"/>
@@ -427281,10 +426150,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03943e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03943e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10329" sboTerm="SBO:0000627" id="MAR10329" name="Exchange of Sphingomyelin (D18:1/18:1)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10329" sboTerm="SBO:0000627" id="R_MAR10329" name="Exchange of Sphingomyelin (D18:1/18:1)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -427292,7 +426161,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10329">
+            <rdf:Description rdf:about="#R_MAR10329">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_sphmyln181181_hs_e"/>
@@ -427303,10 +426172,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03942e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03942e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10330" sboTerm="SBO:0000627" id="MAR10330" name="Exchange of Sphingomyelin (D18:1/20:0)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10330" sboTerm="SBO:0000627" id="R_MAR10330" name="Exchange of Sphingomyelin (D18:1/20:0)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -427314,7 +426183,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10330">
+            <rdf:Description rdf:about="#R_MAR10330">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_sphmyln18120_hs_e"/>
@@ -427325,10 +426194,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03945e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03945e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10331" sboTerm="SBO:0000627" id="MAR10331" name="Exchange of Sphingomyelin (D18:1/20:1)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10331" sboTerm="SBO:0000627" id="R_MAR10331" name="Exchange of Sphingomyelin (D18:1/20:1)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -427336,7 +426205,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10331">
+            <rdf:Description rdf:about="#R_MAR10331">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_sphmyln181201_hs_e"/>
@@ -427347,10 +426216,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03944e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03944e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10332" sboTerm="SBO:0000627" id="MAR10332" name="Exchange of Sphingomyelin (D18:1/21:0)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10332" sboTerm="SBO:0000627" id="R_MAR10332" name="Exchange of Sphingomyelin (D18:1/21:0)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -427358,7 +426227,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10332">
+            <rdf:Description rdf:about="#R_MAR10332">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_sphmyln18121_hs_e"/>
@@ -427369,10 +426238,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03946e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03946e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10333" sboTerm="SBO:0000627" id="MAR10333" name="Exchange of Sphingomyelin (D18:1/22:0)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10333" sboTerm="SBO:0000627" id="R_MAR10333" name="Exchange of Sphingomyelin (D18:1/22:0)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -427380,7 +426249,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10333">
+            <rdf:Description rdf:about="#R_MAR10333">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_sphmyln18122_hs_e"/>
@@ -427391,10 +426260,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03948e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03948e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10334" sboTerm="SBO:0000627" id="MAR10334" name="Exchange of Sphingomyelin (D18:1/22:1)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10334" sboTerm="SBO:0000627" id="R_MAR10334" name="Exchange of Sphingomyelin (D18:1/22:1)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -427402,7 +426271,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10334">
+            <rdf:Description rdf:about="#R_MAR10334">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_sphmyln181221_hs_e"/>
@@ -427413,10 +426282,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03947e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03947e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10335" sboTerm="SBO:0000627" id="MAR10335" name="Exchange of Sphingomyelin (D18:1/23:0)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10335" sboTerm="SBO:0000627" id="R_MAR10335" name="Exchange of Sphingomyelin (D18:1/23:0)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -427424,7 +426293,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10335">
+            <rdf:Description rdf:about="#R_MAR10335">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_sphmyln18123_hs_e"/>
@@ -427435,10 +426304,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03949e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03949e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10336" sboTerm="SBO:0000627" id="MAR10336" name="Exchange of Sphingomyelin (D18:0/24:0)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10336" sboTerm="SBO:0000627" id="R_MAR10336" name="Exchange of Sphingomyelin (D18:0/24:0)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -427446,7 +426315,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10336">
+            <rdf:Description rdf:about="#R_MAR10336">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_sphmyln1824_hs_e"/>
@@ -427457,10 +426326,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03950e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03950e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10337" sboTerm="SBO:0000627" id="MAR10337" name="Exchange of Sphingomyelin (D18:0/25:0)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10337" sboTerm="SBO:0000627" id="R_MAR10337" name="Exchange of Sphingomyelin (D18:0/25:0)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -427468,7 +426337,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10337">
+            <rdf:Description rdf:about="#R_MAR10337">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_sphmyln1825_hs_e"/>
@@ -427479,10 +426348,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03951e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03951e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10338" sboTerm="SBO:0000627" id="MAR10338" name="Exchange of Stearoyl Ethanolamide" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10338" sboTerm="SBO:0000627" id="R_MAR10338" name="Exchange of Stearoyl Ethanolamide" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -427490,7 +426359,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10338">
+            <rdf:Description rdf:about="#R_MAR10338">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_steeth_e"/>
@@ -427501,10 +426370,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03953e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03953e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10339" sboTerm="SBO:0000627" id="MAR10339" name="Exchange of Suberic Acid" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10339" sboTerm="SBO:0000627" id="R_MAR10339" name="Exchange of Suberic Acid" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -427512,7 +426381,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10339">
+            <rdf:Description rdf:about="#R_MAR10339">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_subeac_e"/>
@@ -427523,10 +426392,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03954e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03954e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10340" sboTerm="SBO:0000627" id="MAR10340" name="Exchange of Cis-5, 8-Tetradecadienoic Acid" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10340" sboTerm="SBO:0000627" id="R_MAR10340" name="Exchange of Cis-5, 8-Tetradecadienoic Acid" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -427534,7 +426403,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10340">
+            <rdf:Description rdf:about="#R_MAR10340">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_tetdeca511ac_e"/>
@@ -427545,10 +426414,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03976e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03976e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10341" sboTerm="SBO:0000627" id="MAR10341" name="Exchange of C14:0-Ethanolamide, Tetradecanoyl Ethanolamide" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10341" sboTerm="SBO:0000627" id="R_MAR10341" name="Exchange of C14:0-Ethanolamide, Tetradecanoyl Ethanolamide" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -427556,7 +426425,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10341">
+            <rdf:Description rdf:about="#R_MAR10341">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_tetdecaeth_e"/>
@@ -427567,10 +426436,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03977e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03977e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10342" sboTerm="SBO:0000627" id="MAR10342" name="Exchange of L-Threonate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10342" sboTerm="SBO:0000627" id="R_MAR10342" name="Exchange of L-Threonate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -427578,7 +426447,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10342">
+            <rdf:Description rdf:about="#R_MAR10342">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_thrnt_e"/>
@@ -427589,10 +426458,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02992e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02992e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10343" sboTerm="SBO:0000627" id="MAR10343" name="Exchange of N6, N6, N6-Trimethyl-L-Lysine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10343" sboTerm="SBO:0000627" id="R_MAR10343" name="Exchange of N6, N6, N6-Trimethyl-L-Lysine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -427600,7 +426469,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10343">
+            <rdf:Description rdf:about="#R_MAR10343">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_tmlys_e"/>
@@ -427611,10 +426480,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02517e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02517e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10344" sboTerm="SBO:0000627" id="MAR10344" name="Exchange of Tridecanoyl Thanolamide (C13:0)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10344" sboTerm="SBO:0000627" id="R_MAR10344" name="Exchange of Tridecanoyl Thanolamide (C13:0)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -427622,7 +426491,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10344">
+            <rdf:Description rdf:about="#R_MAR10344">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_trideceth_e"/>
@@ -427633,10 +426502,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM04006e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04006e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10345" sboTerm="SBO:0000627" id="MAR10345" name="Exchange of Tetradecanoyl Carnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10345" sboTerm="SBO:0000627" id="R_MAR10345" name="Exchange of Tetradecanoyl Carnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -427644,7 +426513,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10345">
+            <rdf:Description rdf:about="#R_MAR10345">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_ttdcrn_e"/>
@@ -427656,10 +426525,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02974e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02974e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10346" sboTerm="SBO:0000627" id="MAR10346" name="Exchange of Thromboxane B2" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10346" sboTerm="SBO:0000627" id="R_MAR10346" name="Exchange of Thromboxane B2" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -427667,7 +426536,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10346">
+            <rdf:Description rdf:about="#R_MAR10346">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_txb2_e"/>
@@ -427681,10 +426550,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02995e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02995e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10347" sboTerm="SBO:0000627" id="MAR10347" name="Exchange of Urocanate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10347" sboTerm="SBO:0000627" id="R_MAR10347" name="Exchange of Urocanate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -427692,7 +426561,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10347">
+            <rdf:Description rdf:about="#R_MAR10347">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_urcan_e"/>
@@ -427703,10 +426572,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03124e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03124e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10348" sboTerm="SBO:0000627" id="MAR10348" name="Exchange of W-Hydroxyl Arachidonic Acid" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10348" sboTerm="SBO:0000627" id="R_MAR10348" name="Exchange of W-Hydroxyl Arachidonic Acid" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -427714,7 +426583,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10348">
+            <rdf:Description rdf:about="#R_MAR10348">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_wharachd_e"/>
@@ -427726,10 +426595,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00270e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00270e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10349" sboTerm="SBO:0000627" id="MAR10349" name="Exchange of 1-Vaccenoyl-Cholesterol, Cholesterol-Ester (18:1, Delta 11)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10349" sboTerm="SBO:0000627" id="R_MAR10349" name="Exchange of 1-Vaccenoyl-Cholesterol, Cholesterol-Ester (18:1, Delta 11)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -427737,7 +426606,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10349">
+            <rdf:Description rdf:about="#R_MAR10349">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_xolest181_hs_e"/>
@@ -427748,10 +426617,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM04075e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04075e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10350" sboTerm="SBO:0000627" id="MAR10350" name="Exchange of 1-Linoleoyl-Cholesterol, Cholesterol-Ester (18:2, Delta 9, 12)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10350" sboTerm="SBO:0000627" id="R_MAR10350" name="Exchange of 1-Linoleoyl-Cholesterol, Cholesterol-Ester (18:2, Delta 9, 12)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -427759,7 +426628,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10350">
+            <rdf:Description rdf:about="#R_MAR10350">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_xolest182_hs_e"/>
@@ -427770,10 +426639,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM04076e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04076e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10351" sboTerm="SBO:0000627" id="MAR10351" name="Exchange of 1-Gamma-Linolenoyl-Cholesterol, Cholesterol-Ester (18:3, Delta 6, 9, 12)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10351" sboTerm="SBO:0000627" id="R_MAR10351" name="Exchange of 1-Gamma-Linolenoyl-Cholesterol, Cholesterol-Ester (18:3, Delta 6, 9, 12)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -427781,7 +426650,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10351">
+            <rdf:Description rdf:about="#R_MAR10351">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_xolest183_hs_e"/>
@@ -427792,10 +426661,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM04077e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04077e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10352" sboTerm="SBO:0000627" id="MAR10352" name="Exchange of Cholesteryl Arachidonate, Cholesterol-Ester (20:4, Delta 5, 8, 11, 14)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10352" sboTerm="SBO:0000627" id="R_MAR10352" name="Exchange of Cholesteryl Arachidonate, Cholesterol-Ester (20:4, Delta 5, 8, 11, 14)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -427803,7 +426672,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10352">
+            <rdf:Description rdf:about="#R_MAR10352">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_xolest204_hs_e"/>
@@ -427814,10 +426683,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM04078e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04078e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10353" sboTerm="SBO:0000627" id="MAR10353" name="Exchange of 1-Timnodnoyl-Cholesterol, Cholesterol-Ester (20:5, Delta 5, 8, 11, 14, 17)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10353" sboTerm="SBO:0000627" id="R_MAR10353" name="Exchange of 1-Timnodnoyl-Cholesterol, Cholesterol-Ester (20:5, Delta 5, 8, 11, 14, 17)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -427825,7 +426694,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10353">
+            <rdf:Description rdf:about="#R_MAR10353">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_xolest205_hs_e"/>
@@ -427836,10 +426705,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM04079e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04079e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10354" sboTerm="SBO:0000627" id="MAR10354" name="Exchange of Cholesteryl Docosahexanoate, Cholesterol-Ester (22:6, Delta 4, 7, 10, 13, 16, 19)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10354" sboTerm="SBO:0000627" id="R_MAR10354" name="Exchange of Cholesteryl Docosahexanoate, Cholesterol-Ester (22:6, Delta 4, 7, 10, 13, 16, 19)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -427847,7 +426716,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10354">
+            <rdf:Description rdf:about="#R_MAR10354">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_xolest226_hs_e"/>
@@ -427858,10 +426727,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM04080e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04080e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10355" sboTerm="SBO:0000185" id="MAR10355" name="Transport of N-Formimidoyl-L-Glutamate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10355" sboTerm="SBO:0000185" id="R_MAR10355" name="Transport of N-Formimidoyl-L-Glutamate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -427869,7 +426738,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10355">
+            <rdf:Description rdf:about="#R_MAR10355">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FORGLUt"/>
@@ -427880,13 +426749,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02574c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02574c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02574e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02574e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10356" sboTerm="SBO:0000185" id="MAR10356" name="Transport of Galactitol" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10356" sboTerm="SBO:0000185" id="R_MAR10356" name="Transport of Galactitol" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -427894,7 +426763,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10356">
+            <rdf:Description rdf:about="#R_MAR10356">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GALTt"/>
@@ -427907,13 +426776,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01909c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01909c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01909e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01909e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10357" sboTerm="SBO:0000176" id="MAR10357" name="Acetylation of Glycine" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10357" sboTerm="SBO:0000176" id="R_MAR10357" name="Acetylation of Glycine" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -427922,7 +426791,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10357">
+            <rdf:Description rdf:about="#R_MAR10357">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GLYACm"/>
@@ -427933,16 +426802,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01261m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01986m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03397m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03397m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10358" sboTerm="SBO:0000176" id="MAR10358" name="Acetylation of Lysine" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10358" sboTerm="SBO:0000176" id="R_MAR10358" name="Acetylation of Lysine" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -427951,7 +426820,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10358">
+            <rdf:Description rdf:about="#R_MAR10358">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/LYSACm"/>
@@ -427962,16 +426831,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01261m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02426m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02426m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03401m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03401m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10359" sboTerm="SBO:0000185" id="MAR10359" name="Transport of Glycerol-2-Phosphate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10359" sboTerm="SBO:0000185" id="R_MAR10359" name="Transport of Glycerol-2-Phosphate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -427979,7 +426848,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10359">
+            <rdf:Description rdf:about="#R_MAR10359">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GLYC2Pte"/>
@@ -427990,15 +426859,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03619c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03619c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039e" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03619e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03619e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10360" sboTerm="SBO:0000185" id="MAR10360" name="Diffusion of Glycolate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10360" sboTerm="SBO:0000185" id="R_MAR10360" name="Diffusion of Glycolate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -428006,7 +426875,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10360">
+            <rdf:Description rdf:about="#R_MAR10360">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GLYCLTt"/>
@@ -428020,13 +426889,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01998c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01998c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01998e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01998e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10361" sboTerm="SBO:0000185" id="MAR10361" name="Malonate Transport, Antiport with Chloride" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10361" sboTerm="SBO:0000185" id="R_MAR10361" name="Malonate Transport, Antiport with Chloride" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -428035,7 +426904,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10361">
+            <rdf:Description rdf:about="#R_MAR10361">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/HC00319t1"/>
@@ -428046,15 +426915,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01442e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02440c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01442e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02440c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01442c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02440e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01442c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02440e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10362" sboTerm="SBO:0000185" id="MAR10362" name="Malonate Transport, Antiport with Bicarbonate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10362" sboTerm="SBO:0000185" id="R_MAR10362" name="Malonate Transport, Antiport with Bicarbonate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -428063,7 +426932,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10362">
+            <rdf:Description rdf:about="#R_MAR10362">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/HC00319t2"/>
@@ -428074,15 +426943,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02440c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02440c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02440e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02440e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10363" sboTerm="SBO:0000185" id="MAR10363" name="Transport of Methylmalonate, Antiport with Sulphite" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10363" sboTerm="SBO:0000185" id="R_MAR10363" name="Transport of Methylmalonate, Antiport with Sulphite" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -428091,7 +426960,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10363">
+            <rdf:Description rdf:about="#R_MAR10363">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/HC00900t1"/>
@@ -428102,15 +426971,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02479c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02949e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02479c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02949e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02949c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02479e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02949c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02479e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10364" sboTerm="SBO:0000185" id="MAR10364" name="Transport of Methylmalonate, Antiport with Sulphate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10364" sboTerm="SBO:0000185" id="R_MAR10364" name="Transport of Methylmalonate, Antiport with Sulphate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -428119,7 +426988,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10364">
+            <rdf:Description rdf:about="#R_MAR10364">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/HC00900t2"/>
@@ -428130,15 +426999,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02479c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02946e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02479c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02946e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02946c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02479e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02946c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02479e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10365" sboTerm="SBO:0000185" id="MAR10365" name="Transport of Methylmalonate, Antiport with Thio-Sulphate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10365" sboTerm="SBO:0000185" id="R_MAR10365" name="Transport of Methylmalonate, Antiport with Thio-Sulphate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -428147,7 +427016,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10365">
+            <rdf:Description rdf:about="#R_MAR10365">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/HC00900t3"/>
@@ -428158,15 +427027,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02479c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02991e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02479c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02991e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02991c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02479e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02991c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02479e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10366" sboTerm="SBO:0000185" id="MAR10366" name="Transport of Methylmalonate, Antiport with Phsophate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10366" sboTerm="SBO:0000185" id="R_MAR10366" name="Transport of Methylmalonate, Antiport with Phsophate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -428175,7 +427044,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10366">
+            <rdf:Description rdf:about="#R_MAR10366">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/HC00900t4"/>
@@ -428186,15 +427055,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02479c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02479c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02479e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02479e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10367" sboTerm="SBO:0000185" id="MAR10367" name="Transport of O-Propanoylcarnitine, Sodium Symport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10367" sboTerm="SBO:0000185" id="R_MAR10367" name="Transport of O-Propanoylcarnitine, Sodium Symport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -428202,7 +427071,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10367">
+            <rdf:Description rdf:about="#R_MAR10367">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/HC02149td"/>
@@ -428213,13 +427082,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02657c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02657c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02657e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02657e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10368" sboTerm="SBO:0000185" id="MAR10368" name="Transport of Hexadecanediocacid by FATP" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10368" sboTerm="SBO:0000185" id="R_MAR10368" name="Transport of Hexadecanediocacid by FATP" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -428228,7 +427097,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10368">
+            <rdf:Description rdf:about="#R_MAR10368">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/HEXDIACATP"/>
@@ -428239,18 +427108,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03654c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03654c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03654e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03654e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10369" sboTerm="SBO:0000185" id="MAR10369" name="Transport of Hexadecanediocacid by Diffusion" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10369" sboTerm="SBO:0000185" id="R_MAR10369" name="Transport of Hexadecanediocacid by Diffusion" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -428259,7 +427128,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10369">
+            <rdf:Description rdf:about="#R_MAR10369">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/HEXDIACtd"/>
@@ -428270,13 +427139,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03654c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03654c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03654e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03654e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10370" sboTerm="SBO:0000185" id="MAR10370" name="Transport of Homogentisate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10370" sboTerm="SBO:0000185" id="R_MAR10370" name="Transport of Homogentisate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -428284,7 +427153,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10370">
+            <rdf:Description rdf:about="#R_MAR10370">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/HGENTISt"/>
@@ -428295,13 +427164,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02135c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02135c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02135e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02135e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10371" sboTerm="SBO:0000185" id="MAR10371" name="Transport of Homocarnosine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10371" sboTerm="SBO:0000185" id="R_MAR10371" name="Transport of Homocarnosine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -428310,7 +427179,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10371">
+            <rdf:Description rdf:about="#R_MAR10371">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/HMCARNt"/>
@@ -428321,17 +427190,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01413c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02132c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01413c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02132c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01413e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02132e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01413e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02132e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10372" sboTerm="SBO:0000185" id="MAR10372" name="Transport of Homocitrulline" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10372" sboTerm="SBO:0000185" id="R_MAR10372" name="Transport of Homocitrulline" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -428339,7 +427208,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10372">
+            <rdf:Description rdf:about="#R_MAR10372">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/HMCRNt"/>
@@ -428350,13 +427219,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03681c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03681c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03681e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03681e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10373" sboTerm="SBO:0000185" id="MAR10373" name="3- (3-Hydroxyphenyl)Propionate Transport via Proton Symport, Reversible into Caco 2 Cells" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10373" sboTerm="SBO:0000185" id="R_MAR10373" name="3- (3-Hydroxyphenyl)Propionate Transport via Proton Symport, Reversible into Caco 2 Cells" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -428365,7 +427234,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10373">
+            <rdf:Description rdf:about="#R_MAR10373">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/HPPPNt2r"/>
@@ -428377,15 +427246,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03232e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03232e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03232c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03232c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10374" sboTerm="SBO:0000176" id="MAR10374" name="Acyl-Coenzyme A Hydrolase, Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10374" sboTerm="SBO:0000176" id="R_MAR10374" name="Acyl-Coenzyme A Hydrolase, Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -428393,7 +427262,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10374">
+            <rdf:Description rdf:about="#R_MAR10374">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/HXCOAm"/>
@@ -428404,16 +427273,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02122m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02122m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03684m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03684m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10375" sboTerm="SBO:0000185" id="MAR10375" name="Transport of Hexanoate, Cytosol" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10375" sboTerm="SBO:0000185" id="R_MAR10375" name="Transport of Hexanoate, Cytosol" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -428421,7 +427290,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10375">
+            <rdf:Description rdf:about="#R_MAR10375">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/HXCOAte"/>
@@ -428432,13 +427301,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02122c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02122c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02122e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02122e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10376" sboTerm="SBO:0000185" id="MAR10376" name="Transport of Hexanoate, Peroxisome" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10376" sboTerm="SBO:0000185" id="R_MAR10376" name="Transport of Hexanoate, Peroxisome" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -428446,7 +427315,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10376">
+            <rdf:Description rdf:about="#R_MAR10376">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/HXCOAtx"/>
@@ -428457,13 +427326,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02122x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02122x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02122c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02122c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10377" sboTerm="SBO:0000176" id="MAR10377" name="Acylcoa Hydrolase, Peroxisome" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10377" sboTerm="SBO:0000176" id="R_MAR10377" name="Acylcoa Hydrolase, Peroxisome" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -428471,7 +427340,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10377">
+            <rdf:Description rdf:about="#R_MAR10377">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/HXCOAx"/>
@@ -428482,16 +427351,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02122x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02122x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01597x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03684x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03684x" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10378" sboTerm="SBO:0000185" id="MAR10378" name="Transport of Indole-3-Acetate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10378" sboTerm="SBO:0000185" id="R_MAR10378" name="Transport of Indole-3-Acetate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -428499,7 +427368,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10378">
+            <rdf:Description rdf:about="#R_MAR10378">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/IND3ACt"/>
@@ -428510,13 +427379,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02169c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02169c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02169e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02169e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10379" sboTerm="SBO:0000185" id="MAR10379" name="Transport of L-Cysteate, Taurine Transport System" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10379" sboTerm="SBO:0000185" id="R_MAR10379" name="Transport of L-Cysteate, Taurine Transport System" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -428525,7 +427394,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10379">
+            <rdf:Description rdf:about="#R_MAR10379">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/LCYSTt"/>
@@ -428536,17 +427405,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01442e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02350e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01442e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02350e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01442c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02350c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01442c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02350c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="2" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10380" sboTerm="SBO:0000185" id="MAR10380" name="Transport of W-Carboxy Leukotriene B4, Active Transport" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10380" sboTerm="SBO:0000185" id="R_MAR10380" name="Transport of W-Carboxy Leukotriene B4, Active Transport" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -428555,7 +427424,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10380">
+            <rdf:Description rdf:about="#R_MAR10380">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/LEUKTRB4WCOOHt"/>
@@ -428566,18 +427435,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00585c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00585c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00585e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00585e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10381" sboTerm="SBO:0000185" id="MAR10381" name="Transport of W-Hydroxyl Leukotriene B4, Active Transport" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10381" sboTerm="SBO:0000185" id="R_MAR10381" name="Transport of W-Hydroxyl Leukotriene B4, Active Transport" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -428586,7 +427455,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10381">
+            <rdf:Description rdf:about="#R_MAR10381">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/LEUKTRB4WOHt"/>
@@ -428597,18 +427466,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00599c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00599c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00599e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00599e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10382" sboTerm="SBO:0000185" id="MAR10382" name="Transport of W-Hydroxyl Leukotriene B4, Intracellular Transport" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10382" sboTerm="SBO:0000185" id="R_MAR10382" name="Transport of W-Hydroxyl Leukotriene B4, Intracellular Transport" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -428617,7 +427486,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10382">
+            <rdf:Description rdf:about="#R_MAR10382">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/LEUKTRB4WOHtr"/>
@@ -428628,18 +427497,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00599r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00599r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00599c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01285r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00599c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10383" sboTerm="SBO:0000185" id="MAR10383" name="Transport of Linoleyl Carnitine, Diffusion" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10383" sboTerm="SBO:0000185" id="R_MAR10383" name="Transport of Linoleyl Carnitine, Diffusion" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -428647,7 +427516,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10383">
+            <rdf:Description rdf:about="#R_MAR10383">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/LNLCCRNtd"/>
@@ -428658,13 +427527,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02388c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02388c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02388e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02388e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10384" sboTerm="SBO:0000185" id="MAR10384" name="Transport of L-Pipecolic Acid by Sodium Symport, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10384" sboTerm="SBO:0000185" id="R_MAR10384" name="Transport of L-Pipecolic Acid by Sodium Symport, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -428673,7 +427542,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10384">
+            <rdf:Description rdf:about="#R_MAR10384">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/LPIPECOLt"/>
@@ -428684,15 +427553,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02413c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02413c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02413e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02413e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10385" sboTerm="SBO:0000185" id="MAR10385" name="Transport of L-Pipecolic Acid by Sodium Symport, Intracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10385" sboTerm="SBO:0000185" id="R_MAR10385" name="Transport of L-Pipecolic Acid by Sodium Symport, Intracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -428701,7 +427570,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10385">
+            <rdf:Description rdf:about="#R_MAR10385">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/LPIPECOLtx"/>
@@ -428712,15 +427581,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02413c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02413c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02413x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02413x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519x" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10386" sboTerm="SBO:0000185" id="MAR10386" name="Transport of Lathosterol, Energy Dependant" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10386" sboTerm="SBO:0000185" id="R_MAR10386" name="Transport of Lathosterol, Energy Dependant" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -428728,7 +427597,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10386">
+            <rdf:Description rdf:about="#R_MAR10386">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/LTHSTRLABCt"/>
@@ -428739,18 +427608,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02343c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02343c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02343e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02343e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10387" sboTerm="SBO:0000185" id="MAR10387" name="Transport of Lathosterol, Diffusion" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10387" sboTerm="SBO:0000185" id="R_MAR10387" name="Transport of Lathosterol, Diffusion" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -428758,7 +427627,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10387">
+            <rdf:Description rdf:about="#R_MAR10387">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/LTHSTRLt"/>
@@ -428769,13 +427638,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02343c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02343c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02343e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02343e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10388" sboTerm="SBO:0000185" id="MAR10388" name="Transport of (R)-Mevalonate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10388" sboTerm="SBO:0000185" id="R_MAR10388" name="Transport of (R)-Mevalonate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -428784,7 +427653,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10388">
+            <rdf:Description rdf:about="#R_MAR10388">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/MEV_Rt"/>
@@ -428795,13 +427664,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00167c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00167c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00167e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00167e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10389" sboTerm="SBO:0000185" id="MAR10389" name="Transport of Myo-Inositol 1-Phosphate, Proton Symport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10389" sboTerm="SBO:0000185" id="R_MAR10389" name="Transport of Myo-Inositol 1-Phosphate, Proton Symport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -428810,7 +427679,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10389">
+            <rdf:Description rdf:about="#R_MAR10389">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/MI1Pt"/>
@@ -428821,15 +427690,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02173e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02173e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02173c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02173c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10390" sboTerm="SBO:0000185" id="MAR10390" name="Transport of N-Acetyl-L-Aspartate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10390" sboTerm="SBO:0000185" id="R_MAR10390" name="Transport of N-Acetyl-L-Aspartate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -428838,7 +427707,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10390">
+            <rdf:Description rdf:about="#R_MAR10390">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/NACASPt"/>
@@ -428849,15 +427718,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02519c" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM02532c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM02532c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02519e" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM02532e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM02532e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10391" sboTerm="SBO:0000185" id="MAR10391" name="Transport of N- (Omega)-Hydroxyarginine, Diffusion" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10391" sboTerm="SBO:0000185" id="R_MAR10391" name="Transport of N- (Omega)-Hydroxyarginine, Diffusion" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -428865,7 +427734,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10391">
+            <rdf:Description rdf:about="#R_MAR10391">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/NWHARGtd"/>
@@ -428876,13 +427745,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02497c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02497c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02497e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02497e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10392" sboTerm="SBO:0000185" id="MAR10392" name="Transport of Oxaloacetate, Proton Symport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10392" sboTerm="SBO:0000185" id="R_MAR10392" name="Transport of Oxaloacetate, Proton Symport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -428891,7 +427760,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10392">
+            <rdf:Description rdf:about="#R_MAR10392">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/OAAt"/>
@@ -428903,15 +427772,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02633c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02633c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02633e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02633e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10393" sboTerm="SBO:0000185" id="MAR10393" name="Transport of Phenylacetate by Diffusion" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10393" sboTerm="SBO:0000185" id="R_MAR10393" name="Transport of Phenylacetate by Diffusion" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -428919,7 +427788,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10393">
+            <rdf:Description rdf:about="#R_MAR10393">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/pac"/>
@@ -428930,13 +427799,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02720c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02720c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02720e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02720e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10394" sboTerm="SBO:0000185" id="MAR10394" name="Transport of Erythro-5-Hydroxy-L-Lysinium, Diffusion" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10394" sboTerm="SBO:0000185" id="R_MAR10394" name="Transport of Erythro-5-Hydroxy-L-Lysinium, Diffusion" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -428944,7 +427813,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10394">
+            <rdf:Description rdf:about="#R_MAR10394">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PCOLLG5HLYStd"/>
@@ -428955,13 +427824,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02381c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02381c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02381e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02381e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10395" sboTerm="SBO:0000176" id="MAR10395" name="Formation of Prostaglandin I2" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10395" sboTerm="SBO:0000176" id="R_MAR10395" name="Formation of Prostaglandin I2" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -428970,7 +427839,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10395">
+            <rdf:Description rdf:about="#R_MAR10395">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PROSTGI2c"/>
@@ -428981,13 +427850,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02795c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02795c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01892c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01892c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10396" sboTerm="SBO:0000185" id="MAR10396" name="Transport of O-Phospho-L-Serine, Diffusion" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10396" sboTerm="SBO:0000185" id="R_MAR10396" name="Transport of O-Phospho-L-Serine, Diffusion" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -428995,7 +427864,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10396">
+            <rdf:Description rdf:about="#R_MAR10396">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PSERtr"/>
@@ -429006,13 +427875,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00916c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00916c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00916e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00916e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10397" sboTerm="SBO:0000185" id="MAR10397" name="Transport of L-Saccharopinate, Intracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10397" sboTerm="SBO:0000185" id="R_MAR10397" name="Transport of L-Saccharopinate, Intracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -429020,7 +427889,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10397">
+            <rdf:Description rdf:about="#R_MAR10397">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/SACCRP_Lte"/>
@@ -429031,13 +427900,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02868c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02868c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02868m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02868m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10398" sboTerm="SBO:0000185" id="MAR10398" name="Transport of L-Saccharopinate, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10398" sboTerm="SBO:0000185" id="R_MAR10398" name="Transport of L-Saccharopinate, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -429045,7 +427914,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10398">
+            <rdf:Description rdf:about="#R_MAR10398">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/SACCRP_Ltm"/>
@@ -429056,13 +427925,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02868c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02868c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02868e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02868e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10399" sboTerm="SBO:0000185" id="MAR10399" name="Transport of Sebacic Acid by Diffusion" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10399" sboTerm="SBO:0000185" id="R_MAR10399" name="Transport of Sebacic Acid by Diffusion" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -429071,7 +427940,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10399">
+            <rdf:Description rdf:about="#R_MAR10399">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/SEBACIDtd"/>
@@ -429082,13 +427951,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03923c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03923c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03923e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03923e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10400" sboTerm="SBO:0000185" id="MAR10400" name="Transport of Suberic Acid by Diffusion" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10400" sboTerm="SBO:0000185" id="R_MAR10400" name="Transport of Suberic Acid by Diffusion" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -429097,7 +427966,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10400">
+            <rdf:Description rdf:about="#R_MAR10400">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/SUBEACtd"/>
@@ -429108,13 +427977,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03954c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03954c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03954e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03954e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10401" sboTerm="SBO:0000185" id="MAR10401" name="Transport of Cis-5, 8-Tetradecadienoic Acid, Active Transport" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10401" sboTerm="SBO:0000185" id="R_MAR10401" name="Transport of Cis-5, 8-Tetradecadienoic Acid, Active Transport" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -429123,7 +427992,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10401">
+            <rdf:Description rdf:about="#R_MAR10401">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/TETDECA511ACt"/>
@@ -429134,18 +428003,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03976c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03976c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03976e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03976e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10402" sboTerm="SBO:0000185" id="MAR10402" name="Transport of Cis-5, 8-Tetradecadienoic Acid, Diffusion" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10402" sboTerm="SBO:0000185" id="R_MAR10402" name="Transport of Cis-5, 8-Tetradecadienoic Acid, Diffusion" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -429153,7 +428022,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10402">
+            <rdf:Description rdf:about="#R_MAR10402">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/TETDECA511ACtd"/>
@@ -429164,13 +428033,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03976c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03976c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03976e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03976e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10403" sboTerm="SBO:0000176" id="MAR10403" name="Acetylation of Threonine" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10403" sboTerm="SBO:0000176" id="R_MAR10403" name="Acetylation of Threonine" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -429179,7 +428048,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10403">
+            <rdf:Description rdf:about="#R_MAR10403">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/THRACm"/>
@@ -429190,16 +428059,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01261m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02993m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02993m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03406m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03406m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10404" sboTerm="SBO:0000185" id="MAR10404" name="Transport of L-Threonate by Active Transport" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10404" sboTerm="SBO:0000185" id="R_MAR10404" name="Transport of L-Threonate by Active Transport" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -429208,7 +428077,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10404">
+            <rdf:Description rdf:about="#R_MAR10404">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/THRNTt"/>
@@ -429219,18 +428088,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02992c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02992c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02992e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02992e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10405" sboTerm="SBO:0000185" id="MAR10405" name="Transport of N6, N6, N6-Trimethyl-L-Lysine, Diffusion" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10405" sboTerm="SBO:0000185" id="R_MAR10405" name="Transport of N6, N6, N6-Trimethyl-L-Lysine, Diffusion" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -429238,7 +428107,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10405">
+            <rdf:Description rdf:about="#R_MAR10405">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/TMLYStd"/>
@@ -429249,13 +428118,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02517c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02517c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02517e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02517e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10406" sboTerm="SBO:0000176" id="MAR10406" name="Formation of Thromboxane B2" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10406" sboTerm="SBO:0000176" id="R_MAR10406" name="Formation of Thromboxane B2" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -429264,7 +428133,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10406">
+            <rdf:Description rdf:about="#R_MAR10406">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/TXB2c"/>
@@ -429276,14 +428145,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02994c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02994c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02995c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02995c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10407" sboTerm="SBO:0000185" id="MAR10407" name="Transport of Thromboxane B2" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10407" sboTerm="SBO:0000185" id="R_MAR10407" name="Transport of Thromboxane B2" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -429292,7 +428161,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10407">
+            <rdf:Description rdf:about="#R_MAR10407">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/TXB2t"/>
@@ -429304,18 +428173,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02995c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02995c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02995e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02995e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10408" sboTerm="SBO:0000185" id="MAR10408" name="Transport of Urocanate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10408" sboTerm="SBO:0000185" id="R_MAR10408" name="Transport of Urocanate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -429323,7 +428192,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10408">
+            <rdf:Description rdf:about="#R_MAR10408">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/URCANt"/>
@@ -429334,13 +428203,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03124c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03124c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03124e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03124e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10409" sboTerm="SBO:0000185" id="MAR10409" name="Transport of W-Hydroxyl Arachidonic Acid, Active Transport" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10409" sboTerm="SBO:0000185" id="R_MAR10409" name="Transport of W-Hydroxyl Arachidonic Acid, Active Transport" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -429349,7 +428218,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10409">
+            <rdf:Description rdf:about="#R_MAR10409">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/WHARACHDt"/>
@@ -429360,18 +428229,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00270c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00270c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00270e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00270e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10410" sboTerm="SBO:0000185" id="MAR10410" name="Transport of W-Hydroxyl Arachidonic Acid, Diffusion" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10410" sboTerm="SBO:0000185" id="R_MAR10410" name="Transport of W-Hydroxyl Arachidonic Acid, Diffusion" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -429379,7 +428248,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10410">
+            <rdf:Description rdf:about="#R_MAR10410">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/WHARACHDtd"/>
@@ -429389,13 +428258,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00270c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00270c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00270e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00270e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10411" sboTerm="SBO:0000185" id="MAR10411" name="Transport of W-Hydroxyl Arachidonic Acid, Intracellular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10411" sboTerm="SBO:0000185" id="R_MAR10411" name="Transport of W-Hydroxyl Arachidonic Acid, Intracellular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -429404,7 +428273,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10411">
+            <rdf:Description rdf:about="#R_MAR10411">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/WHARACHDtr"/>
@@ -429415,18 +428284,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00270r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00270r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00270c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01285r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00270c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10412" sboTerm="SBO:0000176" id="MAR10412" name="Acetylation of Isoleucine" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10412" sboTerm="SBO:0000176" id="R_MAR10412" name="Acetylation of Isoleucine" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -429435,7 +428304,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10412">
+            <rdf:Description rdf:about="#R_MAR10412">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ACILEm"/>
@@ -429446,16 +428315,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01261m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02184m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02184m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03399m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03399m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10413" sboTerm="SBO:0000185" id="MAR10413" name="Transport of Acetyl Isoleucine, Intracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10413" sboTerm="SBO:0000185" id="R_MAR10413" name="Transport of Acetyl Isoleucine, Intracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -429463,7 +428332,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10413">
+            <rdf:Description rdf:about="#R_MAR10413">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ACILEtm"/>
@@ -429474,13 +428343,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03399m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03399m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03399c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03399c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10414" sboTerm="SBO:0000185" id="MAR10414" name="Transport of Acetyl Isoleucine, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10414" sboTerm="SBO:0000185" id="R_MAR10414" name="Transport of Acetyl Isoleucine, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -429488,7 +428357,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10414">
+            <rdf:Description rdf:about="#R_MAR10414">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ACILEte"/>
@@ -429499,13 +428368,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03399c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03399c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03399e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03399e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10415" sboTerm="SBO:0000627" id="MAR10415" name="Exchange of Acetyl Isoleucine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10415" sboTerm="SBO:0000627" id="R_MAR10415" name="Exchange of Acetyl Isoleucine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -429513,7 +428382,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10415">
+            <rdf:Description rdf:about="#R_MAR10415">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_acile__L_e"/>
@@ -429524,10 +428393,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03399e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03399e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10416" sboTerm="SBO:0000176" id="MAR10416" name="Acetylation of Leucine" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10416" sboTerm="SBO:0000176" id="R_MAR10416" name="Acetylation of Leucine" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -429536,7 +428405,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10416">
+            <rdf:Description rdf:about="#R_MAR10416">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ACLEUm"/>
@@ -429547,16 +428416,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01261m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02360m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02360m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03400m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03400m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10417" sboTerm="SBO:0000185" id="MAR10417" name="Transport of Acetyl Leucine, Intracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10417" sboTerm="SBO:0000185" id="R_MAR10417" name="Transport of Acetyl Leucine, Intracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -429564,7 +428433,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10417">
+            <rdf:Description rdf:about="#R_MAR10417">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ACLEUtm"/>
@@ -429575,13 +428444,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03400m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03400m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03400c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03400c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10418" sboTerm="SBO:0000185" id="MAR10418" name="Transport of Acetyl Leucine, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10418" sboTerm="SBO:0000185" id="R_MAR10418" name="Transport of Acetyl Leucine, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -429589,7 +428458,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10418">
+            <rdf:Description rdf:about="#R_MAR10418">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ACLEUte"/>
@@ -429600,13 +428469,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03400c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03400c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03400e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03400e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10419" sboTerm="SBO:0000627" id="MAR10419" name="Exchange of Acetyl Leucine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10419" sboTerm="SBO:0000627" id="R_MAR10419" name="Exchange of Acetyl Leucine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -429614,7 +428483,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10419">
+            <rdf:Description rdf:about="#R_MAR10419">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_acleu__L_e"/>
@@ -429625,10 +428494,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03400e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03400e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10420" sboTerm="SBO:0000185" id="MAR10420" name="Transport of Acetyl Homoserine, Intracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10420" sboTerm="SBO:0000185" id="R_MAR10420" name="Transport of Acetyl Homoserine, Intracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -429636,7 +428505,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10420">
+            <rdf:Description rdf:about="#R_MAR10420">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ACHOMtm"/>
@@ -429647,13 +428516,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03398m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03398m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03398c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03398c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10421" sboTerm="SBO:0000185" id="MAR10421" name="Transport of Acetyl Homoserine, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10421" sboTerm="SBO:0000185" id="R_MAR10421" name="Transport of Acetyl Homoserine, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -429661,7 +428530,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10421">
+            <rdf:Description rdf:about="#R_MAR10421">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ACHOMte"/>
@@ -429672,13 +428541,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03398c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03398c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03398e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03398e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10422" sboTerm="SBO:0000627" id="MAR10422" name="Exchange of Acetyl Homoserine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10422" sboTerm="SBO:0000627" id="R_MAR10422" name="Exchange of Acetyl Homoserine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -429686,7 +428555,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10422">
+            <rdf:Description rdf:about="#R_MAR10422">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_achom__L_e"/>
@@ -429697,10 +428566,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03398e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03398e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10423" sboTerm="SBO:0000185" id="MAR10423" name="Transport of Phenylacetylglycine, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10423" sboTerm="SBO:0000185" id="R_MAR10423" name="Transport of Phenylacetylglycine, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -429708,7 +428577,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10423">
+            <rdf:Description rdf:about="#R_MAR10423">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PHACGLYt"/>
@@ -429719,13 +428588,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03862c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03862c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03862e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03862e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10424" sboTerm="SBO:0000627" id="MAR10424" name="Exchange of Phenylacetylglycine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10424" sboTerm="SBO:0000627" id="R_MAR10424" name="Exchange of Phenylacetylglycine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -429733,7 +428602,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10424">
+            <rdf:Description rdf:about="#R_MAR10424">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_phacgly_e"/>
@@ -429744,10 +428613,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03862e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03862e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10425" sboTerm="SBO:0000185" id="MAR10425" name="Transport of Estriol" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10425" sboTerm="SBO:0000185" id="R_MAR10425" name="Transport of Estriol" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -429756,7 +428625,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10425">
+            <rdf:Description rdf:about="#R_MAR10425">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ESTRIOLATP"/>
@@ -429767,18 +428636,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01788c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01788c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01788e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01788e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10426" sboTerm="SBO:0000627" id="MAR10426" name="Exchange of 3- (3-Hydroxy-Phenyl)Propionate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10426" sboTerm="SBO:0000627" id="R_MAR10426" name="Exchange of 3- (3-Hydroxy-Phenyl)Propionate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -429786,7 +428655,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10426">
+            <rdf:Description rdf:about="#R_MAR10426">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_3hpppn_e"/>
@@ -429798,10 +428667,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03232e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03232e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10427" sboTerm="SBO:0000627" id="MAR10427" name="Exchange of 3-Methoxytyramine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10427" sboTerm="SBO:0000627" id="R_MAR10427" name="Exchange of 3-Methoxytyramine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -429809,7 +428678,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10427">
+            <rdf:Description rdf:about="#R_MAR10427">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_3moxtyr_e"/>
@@ -429821,10 +428690,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00821e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00821e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10428" sboTerm="SBO:0000627" id="MAR10428" name="Exchange of 5-Amino-4-Oxopentanoate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10428" sboTerm="SBO:0000627" id="R_MAR10428" name="Exchange of 5-Amino-4-Oxopentanoate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -429832,7 +428701,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10428">
+            <rdf:Description rdf:about="#R_MAR10428">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_5aop_e"/>
@@ -429844,10 +428713,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01074e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01074e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10429" sboTerm="SBO:0000627" id="MAR10429" name="Exchange of D-Arabitol" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10429" sboTerm="SBO:0000627" id="R_MAR10429" name="Exchange of D-Arabitol" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -429855,7 +428724,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10429">
+            <rdf:Description rdf:about="#R_MAR10429">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_abt__D_e"/>
@@ -429867,10 +428736,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03396e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03396e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10430" sboTerm="SBO:0000627" id="MAR10430" name="Exchange of N-Acetyl-L-Glutamate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10430" sboTerm="SBO:0000627" id="R_MAR10430" name="Exchange of N-Acetyl-L-Glutamate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -429878,7 +428747,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10430">
+            <rdf:Description rdf:about="#R_MAR10430">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_acglu_e"/>
@@ -429889,10 +428758,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02536e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02536e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10431" sboTerm="SBO:0000627" id="MAR10431" name="Exchange of Allantoin" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10431" sboTerm="SBO:0000627" id="R_MAR10431" name="Exchange of Allantoin" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -429900,7 +428769,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10431">
+            <rdf:Description rdf:about="#R_MAR10431">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_alltn_e"/>
@@ -429912,10 +428781,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01313e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01313e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10432" sboTerm="SBO:0000627" id="MAR10432" name="Exchange of 11-Cis-Eicosenoate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10432" sboTerm="SBO:0000627" id="R_MAR10432" name="Exchange of 11-Cis-Eicosenoate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -429923,7 +428792,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10432">
+            <rdf:Description rdf:about="#R_MAR10432">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_CE2510_e"/>
@@ -429934,10 +428803,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01584e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01584e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10433" sboTerm="SBO:0000627" id="MAR10433" name="Exchangefor (8Z, 11Z, 14Z)-Eicosatrienoic Acid" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10433" sboTerm="SBO:0000627" id="R_MAR10433" name="Exchangefor (8Z, 11Z, 14Z)-Eicosatrienoic Acid" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -429945,7 +428814,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10433">
+            <rdf:Description rdf:about="#R_MAR10433">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/EX_CE2516[e]"/>
@@ -429955,10 +428824,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03332e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03332e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10434" sboTerm="SBO:0000627" id="MAR10434" name="Exchange of Laurate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10434" sboTerm="SBO:0000627" id="R_MAR10434" name="Exchange of Laurate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -429966,7 +428835,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10434">
+            <rdf:Description rdf:about="#R_MAR10434">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_ddca_e"/>
@@ -429978,10 +428847,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02344e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02344e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10435" sboTerm="SBO:0000627" id="MAR10435" name="Exchange of Glycerol-2-Phosphate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10435" sboTerm="SBO:0000627" id="R_MAR10435" name="Exchange of Glycerol-2-Phosphate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -429989,7 +428858,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10435">
+            <rdf:Description rdf:about="#R_MAR10435">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_glyc2p_e"/>
@@ -430001,10 +428870,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03619e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03619e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10436" sboTerm="SBO:0000627" id="MAR10436" name="Exchange of Glycolate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10436" sboTerm="SBO:0000627" id="R_MAR10436" name="Exchange of Glycolate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -430012,7 +428881,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10436">
+            <rdf:Description rdf:about="#R_MAR10436">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_glyclt_e"/>
@@ -430024,10 +428893,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01998e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01998e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10437" sboTerm="SBO:0000627" id="MAR10437" name="Exchnage for L-Cysteate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10437" sboTerm="SBO:0000627" id="R_MAR10437" name="Exchnage for L-Cysteate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -430035,7 +428904,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10437">
+            <rdf:Description rdf:about="#R_MAR10437">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_Lcyst_e"/>
@@ -430047,10 +428916,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02350e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02350e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10438" sboTerm="SBO:0000627" id="MAR10438" name="Exchange of Oxaloacetate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10438" sboTerm="SBO:0000627" id="R_MAR10438" name="Exchange of Oxaloacetate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -430058,7 +428927,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10438">
+            <rdf:Description rdf:about="#R_MAR10438">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_oaa_e"/>
@@ -430070,10 +428939,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02633e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02633e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10439" sboTerm="SBO:0000627" id="MAR10439" name="Exchange of Phenylacetate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10439" sboTerm="SBO:0000627" id="R_MAR10439" name="Exchange of Phenylacetate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -430081,7 +428950,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10439">
+            <rdf:Description rdf:about="#R_MAR10439">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_pac_e"/>
@@ -430093,10 +428962,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02720e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02720e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10440" sboTerm="SBO:0000627" id="MAR10440" name="Exchange of Phenyl Lactate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10440" sboTerm="SBO:0000627" id="R_MAR10440" name="Exchange of Phenyl Lactate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -430104,7 +428973,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10440">
+            <rdf:Description rdf:about="#R_MAR10440">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_phlac_e"/>
@@ -430115,10 +428984,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03882e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03882e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10441" sboTerm="SBO:0000627" id="MAR10441" name="Exchange of O-Phospho-L-Serine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10441" sboTerm="SBO:0000627" id="R_MAR10441" name="Exchange of O-Phospho-L-Serine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -430126,7 +428995,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10441">
+            <rdf:Description rdf:about="#R_MAR10441">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_pser__L_e"/>
@@ -430138,10 +429007,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00916e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00916e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10442" sboTerm="SBO:0000627" id="MAR10442" name="Exchange of Tetradecenoate (N-C14:1)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10442" sboTerm="SBO:0000627" id="R_MAR10442" name="Exchange of Tetradecenoate (N-C14:1)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -430149,7 +429018,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10442">
+            <rdf:Description rdf:about="#R_MAR10442">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_ttdcea_e"/>
@@ -430161,10 +429030,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00128e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00128e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10443" sboTerm="SBO:0000176" id="MAR10443" name="Glucuronidation of 3- (3-Hydroxyphenyl)Propionate Hydroxy Derivative" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10443" sboTerm="SBO:0000176" id="R_MAR10443" name="Glucuronidation of 3- (3-Hydroxyphenyl)Propionate Hydroxy Derivative" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -430173,7 +429042,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10443">
+            <rdf:Description rdf:about="#R_MAR10443">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/3HPPPNOHGLUCc"/>
@@ -430184,16 +429053,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03109c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03233c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03109c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03233c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03234c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03234c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10444" sboTerm="SBO:0000176" id="MAR10444" name="Acetylation of Homoserine" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10444" sboTerm="SBO:0000176" id="R_MAR10444" name="Acetylation of Homoserine" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -430202,7 +429071,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10444">
+            <rdf:Description rdf:about="#R_MAR10444">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ACHOMm"/>
@@ -430213,16 +429082,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01261m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02136m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02136m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03398m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03398m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10447" sboTerm="SBO:0000176" id="MAR10447" name="Formation of Sulfochenodeoxycholate" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10447" sboTerm="SBO:0000176" id="R_MAR10447" name="Formation of Sulfochenodeoxycholate" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -430231,7 +429100,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10447">
+            <rdf:Description rdf:about="#R_MAR10447">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/HC02220c"/>
@@ -430242,19 +429111,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02682c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03318c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02682c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03318c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02681c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02950c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02681c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02950c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="St2"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10448" sboTerm="SBO:0000176" id="MAR10448" name="Formation of 7-Ketolithocholate" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10448" sboTerm="SBO:0000176" id="R_MAR10448" name="Formation of 7-Ketolithocholate" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -430263,7 +429132,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10448">
+            <rdf:Description rdf:about="#R_MAR10448">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/7KLITCHOLc"/>
@@ -430274,18 +429143,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03318c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03318c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03313c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03313c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10449" sboTerm="SBO:0000176" id="MAR10449" name="Formation of Ursodeoxycholate" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10449" sboTerm="SBO:0000176" id="R_MAR10449" name="Formation of Ursodeoxycholate" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -430294,7 +429163,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10449">
+            <rdf:Description rdf:about="#R_MAR10449">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/HC02194c"/>
@@ -430305,16 +429174,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03313c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03313c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03129c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03129c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10450" sboTerm="SBO:0000176" id="MAR10450" name="Formation of Ursodeoxycholyl Coa" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10450" sboTerm="SBO:0000176" id="R_MAR10450" name="Formation of Ursodeoxycholyl Coa" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -430323,7 +429192,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10450">
+            <rdf:Description rdf:about="#R_MAR10450">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/URSCHOLCOAc"/>
@@ -430334,17 +429203,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03129c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03129c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01334c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM04061c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04061c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10451" sboTerm="SBO:0000185" id="MAR10451" name="Transport of Bile Acid, Tauroursodeoxycholate, Active Transport" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10451" sboTerm="SBO:0000185" id="R_MAR10451" name="Transport of Bile Acid, Tauroursodeoxycholate, Active Transport" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -430353,7 +429222,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10451">
+            <rdf:Description rdf:about="#R_MAR10451">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/HC02195te"/>
@@ -430366,15 +429235,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02966c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02966c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02966e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02966e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -430383,7 +429252,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10452" sboTerm="SBO:0000185" id="MAR10452" name="Transport of Bile Acid, Glycoursodeoxycholate, Active Transport" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10452" sboTerm="SBO:0000185" id="R_MAR10452" name="Transport of Bile Acid, Glycoursodeoxycholate, Active Transport" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -430392,7 +429261,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10452">
+            <rdf:Description rdf:about="#R_MAR10452">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/HC02196te"/>
@@ -430405,15 +429274,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02004c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02004c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02004e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02004e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -430422,7 +429291,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10453" sboTerm="SBO:0000185" id="MAR10453" name="Transport of Bile Acid, Ursodeoxycholate, Active Transport" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10453" sboTerm="SBO:0000185" id="R_MAR10453" name="Transport of Bile Acid, Ursodeoxycholate, Active Transport" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -430431,7 +429300,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10453">
+            <rdf:Description rdf:about="#R_MAR10453">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/HC02194te"/>
@@ -430442,15 +429311,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03129c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03129c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03129e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03129e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -430461,7 +429330,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10454" sboTerm="SBO:0000185" id="MAR10454" name="Transport of Bile Acid, Sulfochenodeoxycholate, Active Transport" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10454" sboTerm="SBO:0000185" id="R_MAR10454" name="Transport of Bile Acid, Sulfochenodeoxycholate, Active Transport" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -430470,7 +429339,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10454">
+            <rdf:Description rdf:about="#R_MAR10454">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/HC02220te"/>
@@ -430481,15 +429350,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02950c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02950c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02950e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02950e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -430500,7 +429369,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10455" sboTerm="SBO:0000185" id="MAR10455" name="Transport of 26-Hydroxycholesterol, Intracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10455" sboTerm="SBO:0000185" id="R_MAR10455" name="Transport of 26-Hydroxycholesterol, Intracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -430508,7 +429377,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10455">
+            <rdf:Description rdf:about="#R_MAR10455">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/XOL27OHtmc"/>
@@ -430519,13 +429388,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00623m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00623m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00623c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00623c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10456" sboTerm="SBO:0000185" id="MAR10456" name="Intracellular Transport of Lysophosphatidic Acid" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10456" sboTerm="SBO:0000185" id="R_MAR10456" name="Intracellular Transport of Lysophosphatidic Acid" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -430533,7 +429402,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10456">
+            <rdf:Description rdf:about="#R_MAR10456">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/ALPA_HStc"/>
@@ -430543,13 +429412,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03419x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03419x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03419c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03419c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10457" sboTerm="SBO:0000176" id="MAR10457" name="Benzoyl Coenzyme A Formation" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10457" sboTerm="SBO:0000176" id="R_MAR10457" name="Benzoyl Coenzyme A Formation" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -430558,7 +429427,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10457">
+            <rdf:Description rdf:about="#R_MAR10457">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/BZCOAFm"/>
@@ -430569,17 +429438,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01380m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01380m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01334m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03485m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03485m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10458" sboTerm="SBO:0000176" id="MAR10458" name="Hippurate (Benzoylglycinate) Formation" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10458" sboTerm="SBO:0000176" id="R_MAR10458" name="Hippurate (Benzoylglycinate) Formation" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -430588,7 +429457,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10458">
+            <rdf:Description rdf:about="#R_MAR10458">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/BGLYFm"/>
@@ -430599,16 +429468,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01986m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03485m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03485m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02123m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02123m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10459" sboTerm="SBO:0000176" id="MAR10459" name="Glycine-N-Acetyltransferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10459" sboTerm="SBO:0000176" id="R_MAR10459" name="Glycine-N-Acetyltransferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -430617,7 +429486,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10459">
+            <rdf:Description rdf:about="#R_MAR10459">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PHACCOAGLYACm"/>
@@ -430631,19 +429500,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01986m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02721m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02721m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02723m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02723m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG5783"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10460" sboTerm="SBO:0000176" id="MAR10460" name="P-Cresol Sulfate Formation from P-Cresol" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10460" sboTerm="SBO:0000176" id="R_MAR10460" name="P-Cresol Sulfate Formation from P-Cresol" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -430652,7 +429521,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10460">
+            <rdf:Description rdf:about="#R_MAR10460">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PCSF"/>
@@ -430663,18 +429532,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02682c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03836c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02682c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03836c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02681c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03837c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02681c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03837c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="St1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10461" sboTerm="SBO:0000176" id="MAR10461" name="Indoxyl Formation from Indole" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10461" sboTerm="SBO:0000176" id="R_MAR10461" name="Indoxyl Formation from Indole" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -430683,7 +429552,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10461">
+            <rdf:Description rdf:about="#R_MAR10461">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/INDOXYLF"/>
@@ -430693,20 +429562,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03701c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03701c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03702c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03702c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Cyp18a1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10462" sboTerm="SBO:0000176" id="MAR10462" name="Indoxyl Sulfate Formation from Indoxyl" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10462" sboTerm="SBO:0000176" id="R_MAR10462" name="Indoxyl Sulfate Formation from Indoxyl" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -430715,7 +429584,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10462">
+            <rdf:Description rdf:about="#R_MAR10462">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/INDSF"/>
@@ -430725,18 +429594,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02682c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03702c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02682c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03702c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02681c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03703c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02681c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03703c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="St1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10463" sboTerm="SBO:0000185" id="MAR10463" name="Indole Uptake into the Liver" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10463" sboTerm="SBO:0000185" id="R_MAR10463" name="Indole Uptake into the Liver" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -430745,7 +429614,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10463">
+            <rdf:Description rdf:about="#R_MAR10463">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/INDOLEup"/>
@@ -430755,13 +429624,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03701e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03701e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03701c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03701c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10464" sboTerm="SBO:0000185" id="MAR10464" name="Indoxyl Sulfate Transport into the Kidney via Oat1 (Slc22A6)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10464" sboTerm="SBO:0000185" id="R_MAR10464" name="Indoxyl Sulfate Transport into the Kidney via Oat1 (Slc22A6)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -430770,7 +429639,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10464">
+            <rdf:Description rdf:about="#R_MAR10464">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/INDSt"/>
@@ -430780,18 +429649,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01306c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03703e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01306c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03703e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01306e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03703c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01306e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03703c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG6126"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10465" sboTerm="SBO:0000185" id="MAR10465" name="P-Cresol Uptake into the Liver" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10465" sboTerm="SBO:0000185" id="R_MAR10465" name="P-Cresol Uptake into the Liver" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -430800,7 +429669,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10465">
+            <rdf:Description rdf:about="#R_MAR10465">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PCRESOLup"/>
@@ -430811,13 +429680,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03836e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03836e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03836c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03836c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10466" sboTerm="SBO:0000185" id="MAR10466" name="Secretion of P-Cresol Sulfate" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10466" sboTerm="SBO:0000185" id="R_MAR10466" name="Secretion of P-Cresol Sulfate" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -430826,7 +429695,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10466">
+            <rdf:Description rdf:about="#R_MAR10466">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PCSsec"/>
@@ -430837,13 +429706,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03837c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03837c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03837e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03837e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10467" sboTerm="SBO:0000185" id="MAR10467" name="Uptake of P-Cresol Sulfate" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10467" sboTerm="SBO:0000185" id="R_MAR10467" name="Uptake of P-Cresol Sulfate" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -430852,7 +429721,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10467">
+            <rdf:Description rdf:about="#R_MAR10467">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/PCSup"/>
@@ -430862,13 +429731,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03837e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03837e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03837c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03837c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10468" sboTerm="SBO:0000185" id="MAR10468" name="3-Hydroxycinnamic Acid Uptake" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10468" sboTerm="SBO:0000185" id="R_MAR10468" name="3-Hydroxycinnamic Acid Uptake" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -430877,7 +429746,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10468">
+            <rdf:Description rdf:about="#R_MAR10468">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/3HCINNMup"/>
@@ -430887,13 +429756,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03215e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03215e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03215c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03215c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10469" sboTerm="SBO:0000185" id="MAR10469" name="3-Hydroxycinanmic Acid Secretion" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10469" sboTerm="SBO:0000185" id="R_MAR10469" name="3-Hydroxycinanmic Acid Secretion" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -430902,7 +429771,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10469">
+            <rdf:Description rdf:about="#R_MAR10469">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/3HCINNMsec"/>
@@ -430912,13 +429781,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03215c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03215c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03215e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03215e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10470" sboTerm="SBO:0000185" id="MAR10470" name="3-Hydroxyphenylpropionic Acid Uptake" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10470" sboTerm="SBO:0000185" id="R_MAR10470" name="3-Hydroxyphenylpropionic Acid Uptake" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -430927,7 +429796,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10470">
+            <rdf:Description rdf:about="#R_MAR10470">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/3HPPAup"/>
@@ -430937,13 +429806,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03231e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03231e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03231c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03231c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10471" sboTerm="SBO:0000185" id="MAR10471" name="3-Hydroxyphenylpropionic Acid Secretion" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10471" sboTerm="SBO:0000185" id="R_MAR10471" name="3-Hydroxyphenylpropionic Acid Secretion" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -430952,7 +429821,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10471">
+            <rdf:Description rdf:about="#R_MAR10471">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/3HPPAsec"/>
@@ -430962,13 +429831,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03231c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03231c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03231e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03231e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10472" sboTerm="SBO:0000627" id="MAR10472" name="3-Hydroxycinnamic Acid Exchange" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10472" sboTerm="SBO:0000627" id="R_MAR10472" name="3-Hydroxycinnamic Acid Exchange" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -430976,7 +429845,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10472">
+            <rdf:Description rdf:about="#R_MAR10472">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/EX_3hcinnm[e]"/>
@@ -430986,10 +429855,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03215e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03215e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10473" sboTerm="SBO:0000627" id="MAR10473" name="3-Hydroxyphenylpropionic Acid Exchange" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10473" sboTerm="SBO:0000627" id="R_MAR10473" name="3-Hydroxyphenylpropionic Acid Exchange" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -430997,7 +429866,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10473">
+            <rdf:Description rdf:about="#R_MAR10473">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/EX_3hppa[e]"/>
@@ -431007,10 +429876,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03231e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03231e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10474" sboTerm="SBO:0000627" id="MAR10474" name="Exchange of Hippurate (Benzoylglycinate)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10474" sboTerm="SBO:0000627" id="R_MAR10474" name="Exchange of Hippurate (Benzoylglycinate)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -431018,7 +429887,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10474">
+            <rdf:Description rdf:about="#R_MAR10474">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_bgly_e"/>
@@ -431029,10 +429898,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02123e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02123e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10475" sboTerm="SBO:0000627" id="MAR10475" name="Benzoic Acid Exchange" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10475" sboTerm="SBO:0000627" id="R_MAR10475" name="Benzoic Acid Exchange" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -431040,7 +429909,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10475">
+            <rdf:Description rdf:about="#R_MAR10475">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_bz_e"/>
@@ -431052,10 +429921,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01380e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01380e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10476" sboTerm="SBO:0000627" id="MAR10476" name="P-Cresol Exchange" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10476" sboTerm="SBO:0000627" id="R_MAR10476" name="P-Cresol Exchange" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -431063,7 +429932,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10476">
+            <rdf:Description rdf:about="#R_MAR10476">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_pcresol_e"/>
@@ -431074,10 +429943,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03836e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03836e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10477" sboTerm="SBO:0000627" id="MAR10477" name="Exchange of P-Cresol Sulfate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10477" sboTerm="SBO:0000627" id="R_MAR10477" name="Exchange of P-Cresol Sulfate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -431085,7 +429954,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10477">
+            <rdf:Description rdf:about="#R_MAR10477">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_pcs_e"/>
@@ -431096,10 +429965,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03837e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03837e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10478" sboTerm="SBO:0000627" id="MAR10478" name="Exchange of Indoxyl Sulfate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10478" sboTerm="SBO:0000627" id="R_MAR10478" name="Exchange of Indoxyl Sulfate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -431107,7 +429976,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10478">
+            <rdf:Description rdf:about="#R_MAR10478">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/EX_inds[e]"/>
@@ -431117,10 +429986,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03703e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03703e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10479" sboTerm="SBO:0000185" id="MAR10479" name="Transport of L-Normetanephrine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10479" sboTerm="SBO:0000185" id="R_MAR10479" name="Transport of L-Normetanephrine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -431129,7 +429998,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10479">
+            <rdf:Description rdf:about="#R_MAR10479">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/NORMETEt"/>
@@ -431140,13 +430009,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02622e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02622e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02622c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02622c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10480" sboTerm="SBO:0000185" id="MAR10480" name="Transport of Metanephrine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10480" sboTerm="SBO:0000185" id="R_MAR10480" name="Transport of Metanephrine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -431155,7 +430024,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10480">
+            <rdf:Description rdf:about="#R_MAR10480">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/MEPIt"/>
@@ -431166,13 +430035,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02407e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02407e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02407c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02407c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10481" sboTerm="SBO:0000185" id="MAR10481" name="Transport of Trehalose, Reversible" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10481" sboTerm="SBO:0000185" id="R_MAR10481" name="Transport of Trehalose, Reversible" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -431181,7 +430050,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10481">
+            <rdf:Description rdf:about="#R_MAR10481">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/TREt"/>
@@ -431192,13 +430061,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03039e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03039c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10482" sboTerm="SBO:0000185" id="MAR10482" name="Transport of 16Alpha-Hydroxyestrone" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10482" sboTerm="SBO:0000185" id="R_MAR10482" name="Transport of 16Alpha-Hydroxyestrone" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -431207,7 +430076,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10482">
+            <rdf:Description rdf:about="#R_MAR10482">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/C05300t"/>
@@ -431218,13 +430087,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00400c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00400c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00400e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00400e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10483" sboTerm="SBO:0000185" id="MAR10483" name="Transport of Retinal" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10483" sboTerm="SBO:0000185" id="R_MAR10483" name="Transport of Retinal" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -431233,7 +430102,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10483">
+            <rdf:Description rdf:about="#R_MAR10483">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/RETINALt"/>
@@ -431244,13 +430113,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02832c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02832c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02832e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02832e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10484" sboTerm="SBO:0000185" id="MAR10484" name="Transport of Maltotetraose, Reversible" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10484" sboTerm="SBO:0000185" id="R_MAR10484" name="Transport of Maltotetraose, Reversible" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -431259,7 +430128,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10484">
+            <rdf:Description rdf:about="#R_MAR10484">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/MALTTTRt"/>
@@ -431271,13 +430140,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02451e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02451e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02451c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02451c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10485" sboTerm="SBO:0000185" id="MAR10485" name="Transport of Leucylleucine, Reversible" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10485" sboTerm="SBO:0000185" id="R_MAR10485" name="Transport of Leucylleucine, Reversible" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -431286,7 +430155,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10485">
+            <rdf:Description rdf:about="#R_MAR10485">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/LEULEUt"/>
@@ -431297,13 +430166,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03715c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03715c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03715e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03715e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10486" sboTerm="SBO:0000185" id="MAR10486" name="Transport of Glycylproline" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10486" sboTerm="SBO:0000185" id="R_MAR10486" name="Transport of Glycylproline" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -431312,7 +430181,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10486">
+            <rdf:Description rdf:about="#R_MAR10486">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GLYPROt"/>
@@ -431323,13 +430192,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03630e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03630e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10487" sboTerm="SBO:0000185" id="MAR10487" name="Transport of Prolylglycine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10487" sboTerm="SBO:0000185" id="R_MAR10487" name="Transport of Prolylglycine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -431338,7 +430207,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10487">
+            <rdf:Description rdf:about="#R_MAR10487">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PROGLyt"/>
@@ -431349,13 +430218,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03896c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03896c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03896e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03896e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10488" sboTerm="SBO:0000185" id="MAR10488" name="Transport of 6,7-Dihydrobiopterin" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10488" sboTerm="SBO:0000185" id="R_MAR10488" name="Transport of 6,7-Dihydrobiopterin" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -431364,7 +430233,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10488">
+            <rdf:Description rdf:about="#R_MAR10488">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/DHBPTt"/>
@@ -431375,13 +430244,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01698c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01698c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01698e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01698e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10489" sboTerm="SBO:0000185" id="MAR10489" name="Transport of 5,6,7,8-Tetrahydrobiopterin" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10489" sboTerm="SBO:0000185" id="R_MAR10489" name="Transport of 5,6,7,8-Tetrahydrobiopterin" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -431390,7 +430259,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10489">
+            <rdf:Description rdf:about="#R_MAR10489">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/THBPTt"/>
@@ -431401,13 +430270,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02978c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02978c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02978e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02978e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10490" sboTerm="SBO:0000627" id="MAR10490" name="Exchange of L-Normetanephrine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10490" sboTerm="SBO:0000627" id="R_MAR10490" name="Exchange of L-Normetanephrine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -431415,7 +430284,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10490">
+            <rdf:Description rdf:about="#R_MAR10490">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_normete__L_e"/>
@@ -431427,10 +430296,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02622e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02622e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10491" sboTerm="SBO:0000627" id="MAR10491" name="Exchange of 16Alpha-Hydroxyestrone" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10491" sboTerm="SBO:0000627" id="R_MAR10491" name="Exchange of 16Alpha-Hydroxyestrone" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -431438,7 +430307,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10491">
+            <rdf:Description rdf:about="#R_MAR10491">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_C05300_e"/>
@@ -431449,10 +430318,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00400e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00400e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10492" sboTerm="SBO:0000627" id="MAR10492" name="Exchange of Retinal" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10492" sboTerm="SBO:0000627" id="R_MAR10492" name="Exchange of Retinal" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -431460,7 +430329,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10492">
+            <rdf:Description rdf:about="#R_MAR10492">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_retinal_e"/>
@@ -431471,10 +430340,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02832e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02832e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10493" sboTerm="SBO:0000627" id="MAR10493" name="Exchange of Maltotetraose" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10493" sboTerm="SBO:0000627" id="R_MAR10493" name="Exchange of Maltotetraose" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -431482,7 +430351,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10493">
+            <rdf:Description rdf:about="#R_MAR10493">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_maltttr_e"/>
@@ -431496,10 +430365,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02451e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02451e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10494" sboTerm="SBO:0000627" id="MAR10494" name="Exchange of L-Prolinylglycine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10494" sboTerm="SBO:0000627" id="R_MAR10494" name="Exchange of L-Prolinylglycine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -431507,7 +430376,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10494">
+            <rdf:Description rdf:about="#R_MAR10494">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_progly_e"/>
@@ -431519,10 +430388,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03896e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03896e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10495" sboTerm="SBO:0000627" id="MAR10495" name="Exchange of 6,7-Dihydrobiopterin" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10495" sboTerm="SBO:0000627" id="R_MAR10495" name="Exchange of 6,7-Dihydrobiopterin" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -431530,7 +430399,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10495">
+            <rdf:Description rdf:about="#R_MAR10495">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_dhbpt_e"/>
@@ -431541,10 +430410,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01698e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01698e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10496" sboTerm="SBO:0000627" id="MAR10496" name="Exchange of 5,6,7,8-Tetrahydrobiopterin" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10496" sboTerm="SBO:0000627" id="R_MAR10496" name="Exchange of 5,6,7,8-Tetrahydrobiopterin" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -431552,7 +430421,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10496">
+            <rdf:Description rdf:about="#R_MAR10496">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_thbpt_e"/>
@@ -431563,10 +430432,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02978e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02978e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10497" sboTerm="SBO:0000627" id="MAR10497" name="Exchange of AlaArgCys" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10497" sboTerm="SBO:0000627" id="R_MAR10497" name="Exchange of AlaArgCys" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -431574,7 +430443,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10497">
+            <rdf:Description rdf:about="#R_MAR10497">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_alaargcys_e"/>
@@ -431585,10 +430454,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03411e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03411e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10498" sboTerm="SBO:0000627" id="MAR10498" name="Exchange of AlaArgGly" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10498" sboTerm="SBO:0000627" id="R_MAR10498" name="Exchange of AlaArgGly" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -431596,7 +430465,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10498">
+            <rdf:Description rdf:about="#R_MAR10498">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_alaarggly_e"/>
@@ -431607,10 +430476,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03412e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03412e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10499" sboTerm="SBO:0000627" id="MAR10499" name="Exchange of AlaAsnLeu" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10499" sboTerm="SBO:0000627" id="R_MAR10499" name="Exchange of AlaAsnLeu" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -431618,7 +430487,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10499">
+            <rdf:Description rdf:about="#R_MAR10499">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_alaasnleu_e"/>
@@ -431629,10 +430498,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03413e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03413e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10500" sboTerm="SBO:0000627" id="MAR10500" name="Exchange of AlaGlyLys" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10500" sboTerm="SBO:0000627" id="R_MAR10500" name="Exchange of AlaGlyLys" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -431640,7 +430509,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10500">
+            <rdf:Description rdf:about="#R_MAR10500">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_alaglylys_e"/>
@@ -431651,10 +430520,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03414e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03414e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10501" sboTerm="SBO:0000627" id="MAR10501" name="Exchange of AlaHisAla" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10501" sboTerm="SBO:0000627" id="R_MAR10501" name="Exchange of AlaHisAla" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -431662,7 +430531,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10501">
+            <rdf:Description rdf:about="#R_MAR10501">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_alahisala_e"/>
@@ -431673,10 +430542,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03415e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03415e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10502" sboTerm="SBO:0000627" id="MAR10502" name="Exchange of AlaLysThr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10502" sboTerm="SBO:0000627" id="R_MAR10502" name="Exchange of AlaLysThr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -431684,7 +430553,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10502">
+            <rdf:Description rdf:about="#R_MAR10502">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_alalysthr_e"/>
@@ -431695,10 +430564,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03416e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03416e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10503" sboTerm="SBO:0000627" id="MAR10503" name="Exchange of ArgAlaAla" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10503" sboTerm="SBO:0000627" id="R_MAR10503" name="Exchange of ArgAlaAla" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -431706,7 +430575,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10503">
+            <rdf:Description rdf:about="#R_MAR10503">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_argalaala_e"/>
@@ -431717,10 +430586,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03435e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03435e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10504" sboTerm="SBO:0000627" id="MAR10504" name="Exchange of ArgAlaPhe" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10504" sboTerm="SBO:0000627" id="R_MAR10504" name="Exchange of ArgAlaPhe" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -431728,7 +430597,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10504">
+            <rdf:Description rdf:about="#R_MAR10504">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_argalaphe_e"/>
@@ -431739,10 +430608,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03436e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03436e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10505" sboTerm="SBO:0000627" id="MAR10505" name="Exchange of ArgAlaThr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10505" sboTerm="SBO:0000627" id="R_MAR10505" name="Exchange of ArgAlaThr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -431750,7 +430619,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10505">
+            <rdf:Description rdf:about="#R_MAR10505">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_argalathr_e"/>
@@ -431761,10 +430630,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03437e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03437e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10506" sboTerm="SBO:0000627" id="MAR10506" name="Exchange of ArgArg" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10506" sboTerm="SBO:0000627" id="R_MAR10506" name="Exchange of ArgArg" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -431772,7 +430641,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10506">
+            <rdf:Description rdf:about="#R_MAR10506">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_argarg_e"/>
@@ -431783,10 +430652,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03438e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03438e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10507" sboTerm="SBO:0000627" id="MAR10507" name="Exchange of ArgArgLys" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10507" sboTerm="SBO:0000627" id="R_MAR10507" name="Exchange of ArgArgLys" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -431794,7 +430663,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10507">
+            <rdf:Description rdf:about="#R_MAR10507">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_argarglys_e"/>
@@ -431805,10 +430674,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03439e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03439e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10508" sboTerm="SBO:0000627" id="MAR10508" name="Exchange of ArgArgMet" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10508" sboTerm="SBO:0000627" id="R_MAR10508" name="Exchange of ArgArgMet" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -431816,7 +430685,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10508">
+            <rdf:Description rdf:about="#R_MAR10508">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_argargmet_e"/>
@@ -431827,10 +430696,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03440e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03440e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10509" sboTerm="SBO:0000627" id="MAR10509" name="Exchange of ArgCysGly" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10509" sboTerm="SBO:0000627" id="R_MAR10509" name="Exchange of ArgCysGly" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -431838,7 +430707,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10509">
+            <rdf:Description rdf:about="#R_MAR10509">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_argcysgly_e"/>
@@ -431849,10 +430718,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03441e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03441e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10510" sboTerm="SBO:0000627" id="MAR10510" name="Exchange of ArgCysSer" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10510" sboTerm="SBO:0000627" id="R_MAR10510" name="Exchange of ArgCysSer" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -431860,7 +430729,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10510">
+            <rdf:Description rdf:about="#R_MAR10510">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_argcysser_e"/>
@@ -431871,10 +430740,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03442e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03442e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10511" sboTerm="SBO:0000627" id="MAR10511" name="Exchange of ArgGluGlu" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10511" sboTerm="SBO:0000627" id="R_MAR10511" name="Exchange of ArgGluGlu" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -431882,7 +430751,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10511">
+            <rdf:Description rdf:about="#R_MAR10511">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_arggluglu_e"/>
@@ -431893,10 +430762,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03443e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03443e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10512" sboTerm="SBO:0000627" id="MAR10512" name="Exchange of ArgGluPro" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10512" sboTerm="SBO:0000627" id="R_MAR10512" name="Exchange of ArgGluPro" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -431904,7 +430773,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10512">
+            <rdf:Description rdf:about="#R_MAR10512">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_argglupro_e"/>
@@ -431915,10 +430784,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03444e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03444e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10513" sboTerm="SBO:0000627" id="MAR10513" name="Exchange of ArgGlyGly" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10513" sboTerm="SBO:0000627" id="R_MAR10513" name="Exchange of ArgGlyGly" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -431926,7 +430795,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10513">
+            <rdf:Description rdf:about="#R_MAR10513">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_argglygly_e"/>
@@ -431937,10 +430806,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03445e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03445e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10514" sboTerm="SBO:0000627" id="MAR10514" name="Exchange of ArgHisThr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10514" sboTerm="SBO:0000627" id="R_MAR10514" name="Exchange of ArgHisThr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -431948,7 +430817,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10514">
+            <rdf:Description rdf:about="#R_MAR10514">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_arghisthr_e"/>
@@ -431959,10 +430828,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03446e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03446e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10515" sboTerm="SBO:0000627" id="MAR10515" name="Exchange of ArgLeuPhe" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10515" sboTerm="SBO:0000627" id="R_MAR10515" name="Exchange of ArgLeuPhe" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -431970,7 +430839,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10515">
+            <rdf:Description rdf:about="#R_MAR10515">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_argleuphe_e"/>
@@ -431981,10 +430850,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03447e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03447e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10516" sboTerm="SBO:0000627" id="MAR10516" name="Exchange of ArgLysAsp" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10516" sboTerm="SBO:0000627" id="R_MAR10516" name="Exchange of ArgLysAsp" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -431992,7 +430861,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10516">
+            <rdf:Description rdf:about="#R_MAR10516">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_arglysasp_e"/>
@@ -432003,10 +430872,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03448e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03448e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10517" sboTerm="SBO:0000627" id="MAR10517" name="Exchange of ArgPheArg" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10517" sboTerm="SBO:0000627" id="R_MAR10517" name="Exchange of ArgPheArg" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -432014,7 +430883,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10517">
+            <rdf:Description rdf:about="#R_MAR10517">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_argphearg_e"/>
@@ -432025,10 +430894,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03449e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03449e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10518" sboTerm="SBO:0000627" id="MAR10518" name="Exchange of ArgProMet" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10518" sboTerm="SBO:0000627" id="R_MAR10518" name="Exchange of ArgProMet" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -432036,7 +430905,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10518">
+            <rdf:Description rdf:about="#R_MAR10518">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_argpromet_e"/>
@@ -432047,10 +430916,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03450e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03450e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10519" sboTerm="SBO:0000627" id="MAR10519" name="Exchange of ArgProThr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10519" sboTerm="SBO:0000627" id="R_MAR10519" name="Exchange of ArgProThr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -432058,7 +430927,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10519">
+            <rdf:Description rdf:about="#R_MAR10519">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_argprothr_e"/>
@@ -432069,10 +430938,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03451e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03451e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10520" sboTerm="SBO:0000627" id="MAR10520" name="Exchange of ArgSerSer" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10520" sboTerm="SBO:0000627" id="R_MAR10520" name="Exchange of ArgSerSer" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -432080,7 +430949,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10520">
+            <rdf:Description rdf:about="#R_MAR10520">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_argserser_e"/>
@@ -432091,10 +430960,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03452e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03452e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10521" sboTerm="SBO:0000627" id="MAR10521" name="Exchange of ArgtyrVal" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10521" sboTerm="SBO:0000627" id="R_MAR10521" name="Exchange of ArgtyrVal" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -432102,7 +430971,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10521">
+            <rdf:Description rdf:about="#R_MAR10521">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_argtyrval_e"/>
@@ -432113,10 +430982,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03453e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03453e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10522" sboTerm="SBO:0000627" id="MAR10522" name="Exchange of ArgValCys" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10522" sboTerm="SBO:0000627" id="R_MAR10522" name="Exchange of ArgValCys" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -432124,7 +430993,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10522">
+            <rdf:Description rdf:about="#R_MAR10522">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_argvalcys_e"/>
@@ -432135,10 +431004,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03454e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03454e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10523" sboTerm="SBO:0000627" id="MAR10523" name="Exchange of ArgValTrp" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10523" sboTerm="SBO:0000627" id="R_MAR10523" name="Exchange of ArgValTrp" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -432146,7 +431015,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10523">
+            <rdf:Description rdf:about="#R_MAR10523">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_argvaltrp_e"/>
@@ -432157,10 +431026,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03455e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03455e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10524" sboTerm="SBO:0000627" id="MAR10524" name="Exchange of AsnAsnArg" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10524" sboTerm="SBO:0000627" id="R_MAR10524" name="Exchange of AsnAsnArg" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -432168,7 +431037,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10524">
+            <rdf:Description rdf:about="#R_MAR10524">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_asnasnarg_e"/>
@@ -432179,10 +431048,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03456e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03456e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10525" sboTerm="SBO:0000627" id="MAR10525" name="Exchange of AsnCysCys" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10525" sboTerm="SBO:0000627" id="R_MAR10525" name="Exchange of AsnCysCys" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -432190,7 +431059,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10525">
+            <rdf:Description rdf:about="#R_MAR10525">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_asncyscys_e"/>
@@ -432201,10 +431070,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03457e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03457e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10526" sboTerm="SBO:0000627" id="MAR10526" name="Exchange of AsnMetPro" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10526" sboTerm="SBO:0000627" id="R_MAR10526" name="Exchange of AsnMetPro" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -432212,7 +431081,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10526">
+            <rdf:Description rdf:about="#R_MAR10526">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_asnmetpro_e"/>
@@ -432223,10 +431092,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03458e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03458e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10527" sboTerm="SBO:0000627" id="MAR10527" name="Exchange of AsnPheAsp" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10527" sboTerm="SBO:0000627" id="R_MAR10527" name="Exchange of AsnPheAsp" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -432234,7 +431103,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10527">
+            <rdf:Description rdf:about="#R_MAR10527">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_asnpheasp_e"/>
@@ -432245,10 +431114,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03459e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03459e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10528" sboTerm="SBO:0000627" id="MAR10528" name="Exchange of AsnPheCys" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10528" sboTerm="SBO:0000627" id="R_MAR10528" name="Exchange of AsnPheCys" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -432256,7 +431125,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10528">
+            <rdf:Description rdf:about="#R_MAR10528">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_asnphecys_e"/>
@@ -432267,10 +431136,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03460e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03460e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10529" sboTerm="SBO:0000627" id="MAR10529" name="Exchange of AsntyrGly" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10529" sboTerm="SBO:0000627" id="R_MAR10529" name="Exchange of AsntyrGly" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -432278,7 +431147,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10529">
+            <rdf:Description rdf:about="#R_MAR10529">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_asntyrgly_e"/>
@@ -432289,10 +431158,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03461e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03461e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10530" sboTerm="SBO:0000627" id="MAR10530" name="Exchange of AsntyrPhe" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10530" sboTerm="SBO:0000627" id="R_MAR10530" name="Exchange of AsntyrPhe" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -432300,7 +431169,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10530">
+            <rdf:Description rdf:about="#R_MAR10530">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_asntyrphe_e"/>
@@ -432311,10 +431180,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03462e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03462e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10531" sboTerm="SBO:0000627" id="MAR10531" name="Exchange of AsntyrThr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10531" sboTerm="SBO:0000627" id="R_MAR10531" name="Exchange of AsntyrThr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -432322,7 +431191,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10531">
+            <rdf:Description rdf:about="#R_MAR10531">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_asntyrthr_e"/>
@@ -432333,10 +431202,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03463e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03463e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10532" sboTerm="SBO:0000627" id="MAR10532" name="Exchange of AspAlaArg" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10532" sboTerm="SBO:0000627" id="R_MAR10532" name="Exchange of AspAlaArg" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -432344,7 +431213,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10532">
+            <rdf:Description rdf:about="#R_MAR10532">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_aspalaarg_e"/>
@@ -432355,10 +431224,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03464e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03464e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10533" sboTerm="SBO:0000627" id="MAR10533" name="Exchange of AspAsnGlu" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10533" sboTerm="SBO:0000627" id="R_MAR10533" name="Exchange of AspAsnGlu" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -432366,7 +431235,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10533">
+            <rdf:Description rdf:about="#R_MAR10533">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_aspasnglu_e"/>
@@ -432377,10 +431246,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03465e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03465e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10534" sboTerm="SBO:0000627" id="MAR10534" name="Exchange of AspGlu" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10534" sboTerm="SBO:0000627" id="R_MAR10534" name="Exchange of AspGlu" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -432388,7 +431257,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10534">
+            <rdf:Description rdf:about="#R_MAR10534">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_aspglu_e"/>
@@ -432399,10 +431268,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03466e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03466e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10535" sboTerm="SBO:0000627" id="MAR10535" name="Exchange of AspGluPro" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10535" sboTerm="SBO:0000627" id="R_MAR10535" name="Exchange of AspGluPro" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -432410,7 +431279,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10535">
+            <rdf:Description rdf:about="#R_MAR10535">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_aspglupro_e"/>
@@ -432421,10 +431290,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03467e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03467e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10536" sboTerm="SBO:0000627" id="MAR10536" name="Exchange of AspGluTrp" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10536" sboTerm="SBO:0000627" id="R_MAR10536" name="Exchange of AspGluTrp" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -432432,7 +431301,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10536">
+            <rdf:Description rdf:about="#R_MAR10536">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_aspglutrp_e"/>
@@ -432443,10 +431312,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03468e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03468e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10537" sboTerm="SBO:0000627" id="MAR10537" name="Exchange of AspHisCys" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10537" sboTerm="SBO:0000627" id="R_MAR10537" name="Exchange of AspHisCys" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -432454,7 +431323,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10537">
+            <rdf:Description rdf:about="#R_MAR10537">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_asphiscys_e"/>
@@ -432465,10 +431334,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03469e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03469e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10538" sboTerm="SBO:0000627" id="MAR10538" name="Exchange of AspHisPro" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10538" sboTerm="SBO:0000627" id="R_MAR10538" name="Exchange of AspHisPro" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -432476,7 +431345,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10538">
+            <rdf:Description rdf:about="#R_MAR10538">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_asphispro_e"/>
@@ -432487,10 +431356,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03470e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03470e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10539" sboTerm="SBO:0000627" id="MAR10539" name="Exchange of AspLysGlu" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10539" sboTerm="SBO:0000627" id="R_MAR10539" name="Exchange of AspLysGlu" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -432498,7 +431367,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10539">
+            <rdf:Description rdf:about="#R_MAR10539">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_asplysglu_e"/>
@@ -432509,10 +431378,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03471e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03471e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10540" sboTerm="SBO:0000627" id="MAR10540" name="Exchange of AspLysHis" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10540" sboTerm="SBO:0000627" id="R_MAR10540" name="Exchange of AspLysHis" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -432520,7 +431389,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10540">
+            <rdf:Description rdf:about="#R_MAR10540">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_asplyshis_e"/>
@@ -432531,10 +431400,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03472e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03472e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10541" sboTerm="SBO:0000627" id="MAR10541" name="Exchange of AspMetAsp" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10541" sboTerm="SBO:0000627" id="R_MAR10541" name="Exchange of AspMetAsp" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -432542,7 +431411,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10541">
+            <rdf:Description rdf:about="#R_MAR10541">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_aspmetasp_e"/>
@@ -432553,10 +431422,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03473e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03473e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10542" sboTerm="SBO:0000627" id="MAR10542" name="Exchange of AspProLys" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10542" sboTerm="SBO:0000627" id="R_MAR10542" name="Exchange of AspProLys" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -432564,7 +431433,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10542">
+            <rdf:Description rdf:about="#R_MAR10542">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_aspprolys_e"/>
@@ -432575,10 +431444,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03474e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03474e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10543" sboTerm="SBO:0000627" id="MAR10543" name="Exchange of AspValAsn" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10543" sboTerm="SBO:0000627" id="R_MAR10543" name="Exchange of AspValAsn" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -432586,7 +431455,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10543">
+            <rdf:Description rdf:about="#R_MAR10543">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_aspvalasn_e"/>
@@ -432597,10 +431466,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03475e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03475e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10544" sboTerm="SBO:0000627" id="MAR10544" name="Exchange of CysAsnMet" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10544" sboTerm="SBO:0000627" id="R_MAR10544" name="Exchange of CysAsnMet" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -432608,7 +431477,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10544">
+            <rdf:Description rdf:about="#R_MAR10544">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_cysasnmet_e"/>
@@ -432619,10 +431488,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03527e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03527e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10545" sboTerm="SBO:0000627" id="MAR10545" name="Exchange of CysAspPhe" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10545" sboTerm="SBO:0000627" id="R_MAR10545" name="Exchange of CysAspPhe" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -432630,7 +431499,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10545">
+            <rdf:Description rdf:about="#R_MAR10545">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_cysaspphe_e"/>
@@ -432641,10 +431510,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03528e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03528e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10546" sboTerm="SBO:0000627" id="MAR10546" name="Exchange of CysCys" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10546" sboTerm="SBO:0000627" id="R_MAR10546" name="Exchange of CysCys" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -432652,7 +431521,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10546">
+            <rdf:Description rdf:about="#R_MAR10546">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_cyscys_e"/>
@@ -432663,10 +431532,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03529e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03529e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10547" sboTerm="SBO:0000627" id="MAR10547" name="Exchange of CysGlnMet" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10547" sboTerm="SBO:0000627" id="R_MAR10547" name="Exchange of CysGlnMet" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -432674,7 +431543,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10547">
+            <rdf:Description rdf:about="#R_MAR10547">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_cysglnmet_e"/>
@@ -432685,10 +431554,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03530e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03530e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10548" sboTerm="SBO:0000627" id="MAR10548" name="Exchange of CysGluHis" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10548" sboTerm="SBO:0000627" id="R_MAR10548" name="Exchange of CysGluHis" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -432696,7 +431565,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10548">
+            <rdf:Description rdf:about="#R_MAR10548">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_cysgluhis_e"/>
@@ -432707,10 +431576,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03531e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03531e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10549" sboTerm="SBO:0000627" id="MAR10549" name="Exchange of CysGluTrp" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10549" sboTerm="SBO:0000627" id="R_MAR10549" name="Exchange of CysGluTrp" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -432718,7 +431587,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10549">
+            <rdf:Description rdf:about="#R_MAR10549">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_cysglutrp_e"/>
@@ -432729,10 +431598,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03532e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03532e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10550" sboTerm="SBO:0000627" id="MAR10550" name="Exchange of CysLeuThr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10550" sboTerm="SBO:0000627" id="R_MAR10550" name="Exchange of CysLeuThr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -432740,7 +431609,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10550">
+            <rdf:Description rdf:about="#R_MAR10550">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_cysleuthr_e"/>
@@ -432751,10 +431620,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03533e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03533e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10551" sboTerm="SBO:0000627" id="MAR10551" name="Exchange of CysSerMet" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10551" sboTerm="SBO:0000627" id="R_MAR10551" name="Exchange of CysSerMet" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -432762,7 +431631,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10551">
+            <rdf:Description rdf:about="#R_MAR10551">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_cyssermet_e"/>
@@ -432773,10 +431642,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03534e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03534e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10552" sboTerm="SBO:0000627" id="MAR10552" name="Exchange of CystyrAsn" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10552" sboTerm="SBO:0000627" id="R_MAR10552" name="Exchange of CystyrAsn" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -432784,7 +431653,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10552">
+            <rdf:Description rdf:about="#R_MAR10552">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_cystyrasn_e"/>
@@ -432795,10 +431664,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03535e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03535e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10553" sboTerm="SBO:0000627" id="MAR10553" name="Exchange of GlnAsnGln" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10553" sboTerm="SBO:0000627" id="R_MAR10553" name="Exchange of GlnAsnGln" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -432806,7 +431675,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10553">
+            <rdf:Description rdf:about="#R_MAR10553">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_glnasngln_e"/>
@@ -432817,10 +431686,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03596e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03596e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10554" sboTerm="SBO:0000627" id="MAR10554" name="Exchange of GlnHisHis" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10554" sboTerm="SBO:0000627" id="R_MAR10554" name="Exchange of GlnHisHis" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -432828,7 +431697,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10554">
+            <rdf:Description rdf:about="#R_MAR10554">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_glnhishis_e"/>
@@ -432839,10 +431708,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03597e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03597e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10555" sboTerm="SBO:0000627" id="MAR10555" name="Exchange of GlnHisLys" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10555" sboTerm="SBO:0000627" id="R_MAR10555" name="Exchange of GlnHisLys" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -432850,7 +431719,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10555">
+            <rdf:Description rdf:about="#R_MAR10555">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_glnhislys_e"/>
@@ -432861,10 +431730,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03598e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03598e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10556" sboTerm="SBO:0000627" id="MAR10556" name="Exchange of GlnLysLys" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10556" sboTerm="SBO:0000627" id="R_MAR10556" name="Exchange of GlnLysLys" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -432872,7 +431741,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10556">
+            <rdf:Description rdf:about="#R_MAR10556">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_glnlyslys_e"/>
@@ -432883,10 +431752,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03599e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03599e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10557" sboTerm="SBO:0000627" id="MAR10557" name="Exchange of GlnLysTrp" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10557" sboTerm="SBO:0000627" id="R_MAR10557" name="Exchange of GlnLysTrp" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -432894,7 +431763,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10557">
+            <rdf:Description rdf:about="#R_MAR10557">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_glnlystrp_e"/>
@@ -432905,10 +431774,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03600e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03600e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10558" sboTerm="SBO:0000627" id="MAR10558" name="Exchange of GlnProGlu" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10558" sboTerm="SBO:0000627" id="R_MAR10558" name="Exchange of GlnProGlu" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -432916,7 +431785,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10558">
+            <rdf:Description rdf:about="#R_MAR10558">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_glnproglu_e"/>
@@ -432927,10 +431796,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03601e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03601e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10559" sboTerm="SBO:0000627" id="MAR10559" name="Exchange of GlnTrpGlu" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10559" sboTerm="SBO:0000627" id="R_MAR10559" name="Exchange of GlnTrpGlu" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -432938,7 +431807,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10559">
+            <rdf:Description rdf:about="#R_MAR10559">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_glntrpglu_e"/>
@@ -432949,10 +431818,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03602e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03602e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10560" sboTerm="SBO:0000627" id="MAR10560" name="Exchange of GlntyrLeu" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10560" sboTerm="SBO:0000627" id="R_MAR10560" name="Exchange of GlntyrLeu" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -432960,7 +431829,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10560">
+            <rdf:Description rdf:about="#R_MAR10560">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_glntyrleu_e"/>
@@ -432971,10 +431840,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03603e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03603e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10561" sboTerm="SBO:0000627" id="MAR10561" name="Exchange of GluArgLeu" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10561" sboTerm="SBO:0000627" id="R_MAR10561" name="Exchange of GluArgLeu" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -432982,7 +431851,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10561">
+            <rdf:Description rdf:about="#R_MAR10561">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_gluargleu_e"/>
@@ -432993,10 +431862,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03606e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03606e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10562" sboTerm="SBO:0000627" id="MAR10562" name="Exchange of GluAsnLeu" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10562" sboTerm="SBO:0000627" id="R_MAR10562" name="Exchange of GluAsnLeu" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -433004,7 +431873,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10562">
+            <rdf:Description rdf:about="#R_MAR10562">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_gluasnleu_e"/>
@@ -433015,10 +431884,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03607e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03607e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10563" sboTerm="SBO:0000627" id="MAR10563" name="Exchange of GluGlu" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10563" sboTerm="SBO:0000627" id="R_MAR10563" name="Exchange of GluGlu" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -433026,7 +431895,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10563">
+            <rdf:Description rdf:about="#R_MAR10563">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_gluglu_e"/>
@@ -433037,10 +431906,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03608e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03608e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10564" sboTerm="SBO:0000627" id="MAR10564" name="Exchange of GluIleLys" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10564" sboTerm="SBO:0000627" id="R_MAR10564" name="Exchange of GluIleLys" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -433048,7 +431917,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10564">
+            <rdf:Description rdf:about="#R_MAR10564">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_gluilelys_e"/>
@@ -433059,10 +431928,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03609e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03609e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10565" sboTerm="SBO:0000627" id="MAR10565" name="Exchange of GluLeu" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10565" sboTerm="SBO:0000627" id="R_MAR10565" name="Exchange of GluLeu" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -433070,7 +431939,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10565">
+            <rdf:Description rdf:about="#R_MAR10565">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_gluleu_e"/>
@@ -433081,10 +431950,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03610e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03610e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10566" sboTerm="SBO:0000627" id="MAR10566" name="Exchange of GluMet" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10566" sboTerm="SBO:0000627" id="R_MAR10566" name="Exchange of GluMet" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -433092,7 +431961,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10566">
+            <rdf:Description rdf:about="#R_MAR10566">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_glumet_e"/>
@@ -433103,10 +431972,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03611e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03611e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10567" sboTerm="SBO:0000627" id="MAR10567" name="Exchange of GluMetHis" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10567" sboTerm="SBO:0000627" id="R_MAR10567" name="Exchange of GluMetHis" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -433114,7 +431983,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10567">
+            <rdf:Description rdf:about="#R_MAR10567">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_glumethis_e"/>
@@ -433125,10 +431994,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03612e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03612e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10568" sboTerm="SBO:0000627" id="MAR10568" name="Exchange of GluThr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10568" sboTerm="SBO:0000627" id="R_MAR10568" name="Exchange of GluThr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -433136,7 +432005,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10568">
+            <rdf:Description rdf:about="#R_MAR10568">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_gluthr_e"/>
@@ -433147,10 +432016,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03616e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03616e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10569" sboTerm="SBO:0000627" id="MAR10569" name="Exchange of GluThrLys" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10569" sboTerm="SBO:0000627" id="R_MAR10569" name="Exchange of GluThrLys" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -433158,7 +432027,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10569">
+            <rdf:Description rdf:about="#R_MAR10569">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_gluthrlys_e"/>
@@ -433169,10 +432038,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03617e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03617e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10570" sboTerm="SBO:0000627" id="MAR10570" name="Exchange of GluTrpAla" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10570" sboTerm="SBO:0000627" id="R_MAR10570" name="Exchange of GluTrpAla" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -433180,7 +432049,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10570">
+            <rdf:Description rdf:about="#R_MAR10570">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_glutrpala_e"/>
@@ -433191,10 +432060,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03618e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03618e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10571" sboTerm="SBO:0000627" id="MAR10571" name="Exchange of GlyHisAsn" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10571" sboTerm="SBO:0000627" id="R_MAR10571" name="Exchange of GlyHisAsn" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -433202,7 +432071,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10571">
+            <rdf:Description rdf:about="#R_MAR10571">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_glyhisasn_e"/>
@@ -433213,10 +432082,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03624e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03624e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10572" sboTerm="SBO:0000627" id="MAR10572" name="Exchange of GlyHisLys" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10572" sboTerm="SBO:0000627" id="R_MAR10572" name="Exchange of GlyHisLys" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -433224,7 +432093,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10572">
+            <rdf:Description rdf:about="#R_MAR10572">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_glyhislys_e"/>
@@ -433235,10 +432104,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03625e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03625e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10573" sboTerm="SBO:0000627" id="MAR10573" name="Exchange of GlyLysCys" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10573" sboTerm="SBO:0000627" id="R_MAR10573" name="Exchange of GlyLysCys" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -433246,7 +432115,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10573">
+            <rdf:Description rdf:about="#R_MAR10573">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_glylyscys_e"/>
@@ -433257,10 +432126,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03627e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03627e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10574" sboTerm="SBO:0000627" id="MAR10574" name="Exchange of GlyLysPhe" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10574" sboTerm="SBO:0000627" id="R_MAR10574" name="Exchange of GlyLysPhe" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -433268,7 +432137,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10574">
+            <rdf:Description rdf:about="#R_MAR10574">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_glylysphe_e"/>
@@ -433279,10 +432148,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03628e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03628e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10575" sboTerm="SBO:0000627" id="MAR10575" name="Exchange of GlytyrLys" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10575" sboTerm="SBO:0000627" id="R_MAR10575" name="Exchange of GlytyrLys" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -433290,7 +432159,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10575">
+            <rdf:Description rdf:about="#R_MAR10575">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_glytyrlys_e"/>
@@ -433301,10 +432170,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03632e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03632e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10576" sboTerm="SBO:0000627" id="MAR10576" name="Exchange of GlyValHis" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10576" sboTerm="SBO:0000627" id="R_MAR10576" name="Exchange of GlyValHis" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -433312,7 +432181,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10576">
+            <rdf:Description rdf:about="#R_MAR10576">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_glyvalhis_e"/>
@@ -433323,10 +432192,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03633e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03633e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10577" sboTerm="SBO:0000627" id="MAR10577" name="Exchange of HisArgCys" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10577" sboTerm="SBO:0000627" id="R_MAR10577" name="Exchange of HisArgCys" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -433334,7 +432203,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10577">
+            <rdf:Description rdf:about="#R_MAR10577">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_hisargcys_e"/>
@@ -433345,10 +432214,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03662e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03662e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10578" sboTerm="SBO:0000627" id="MAR10578" name="Exchange of HisArgSer" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10578" sboTerm="SBO:0000627" id="R_MAR10578" name="Exchange of HisArgSer" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -433356,7 +432225,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10578">
+            <rdf:Description rdf:about="#R_MAR10578">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_hisargser_e"/>
@@ -433367,10 +432236,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03663e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03663e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10579" sboTerm="SBO:0000627" id="MAR10579" name="Exchange of HisAsp" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10579" sboTerm="SBO:0000627" id="R_MAR10579" name="Exchange of HisAsp" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -433378,7 +432247,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10579">
+            <rdf:Description rdf:about="#R_MAR10579">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_hisasp_e"/>
@@ -433389,10 +432258,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03664e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03664e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10580" sboTerm="SBO:0000627" id="MAR10580" name="Exchange of HisCysCys" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10580" sboTerm="SBO:0000627" id="R_MAR10580" name="Exchange of HisCysCys" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -433400,7 +432269,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10580">
+            <rdf:Description rdf:about="#R_MAR10580">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_hiscyscys_e"/>
@@ -433411,10 +432280,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03665e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03665e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10581" sboTerm="SBO:0000627" id="MAR10581" name="Exchange of HisGlnAla" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10581" sboTerm="SBO:0000627" id="R_MAR10581" name="Exchange of HisGlnAla" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -433422,7 +432291,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10581">
+            <rdf:Description rdf:about="#R_MAR10581">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_hisglnala_e"/>
@@ -433433,10 +432302,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03666e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03666e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10582" sboTerm="SBO:0000627" id="MAR10582" name="Exchange of HisGlu" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10582" sboTerm="SBO:0000627" id="R_MAR10582" name="Exchange of HisGlu" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -433444,7 +432313,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10582">
+            <rdf:Description rdf:about="#R_MAR10582">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_hisglu_e"/>
@@ -433455,10 +432324,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03667e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03667e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10583" sboTerm="SBO:0000627" id="MAR10583" name="Exchange of HisGluGln" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10583" sboTerm="SBO:0000627" id="R_MAR10583" name="Exchange of HisGluGln" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -433466,7 +432335,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10583">
+            <rdf:Description rdf:about="#R_MAR10583">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_hisglugln_e"/>
@@ -433477,10 +432346,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03668e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03668e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10584" sboTerm="SBO:0000627" id="MAR10584" name="Exchange of HisGlyLys" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10584" sboTerm="SBO:0000627" id="R_MAR10584" name="Exchange of HisGlyLys" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -433488,7 +432357,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10584">
+            <rdf:Description rdf:about="#R_MAR10584">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_hisglylys_e"/>
@@ -433499,10 +432368,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03669e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03669e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10585" sboTerm="SBO:0000627" id="MAR10585" name="Exchange of HisHisLys" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10585" sboTerm="SBO:0000627" id="R_MAR10585" name="Exchange of HisHisLys" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -433510,7 +432379,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10585">
+            <rdf:Description rdf:about="#R_MAR10585">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_hishislys_e"/>
@@ -433521,10 +432390,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03670e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03670e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10586" sboTerm="SBO:0000627" id="MAR10586" name="Exchange of HisLysAla" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10586" sboTerm="SBO:0000627" id="R_MAR10586" name="Exchange of HisLysAla" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -433532,7 +432401,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10586">
+            <rdf:Description rdf:about="#R_MAR10586">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_hislysala_e"/>
@@ -433543,10 +432412,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03671e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03671e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10587" sboTerm="SBO:0000627" id="MAR10587" name="Exchange of HisLysGlu" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10587" sboTerm="SBO:0000627" id="R_MAR10587" name="Exchange of HisLysGlu" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -433554,7 +432423,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10587">
+            <rdf:Description rdf:about="#R_MAR10587">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_hislysglu_e"/>
@@ -433565,10 +432434,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03672e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03672e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10588" sboTerm="SBO:0000627" id="MAR10588" name="Exchange of HisLysIle" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10588" sboTerm="SBO:0000627" id="R_MAR10588" name="Exchange of HisLysIle" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -433576,7 +432445,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10588">
+            <rdf:Description rdf:about="#R_MAR10588">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_hislysile_e"/>
@@ -433587,10 +432456,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03673e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03673e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10589" sboTerm="SBO:0000627" id="MAR10589" name="Exchange of HisLysThr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10589" sboTerm="SBO:0000627" id="R_MAR10589" name="Exchange of HisLysThr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -433598,7 +432467,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10589">
+            <rdf:Description rdf:about="#R_MAR10589">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_hislysthr_e"/>
@@ -433609,10 +432478,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03674e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03674e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10590" sboTerm="SBO:0000627" id="MAR10590" name="Exchange of HisLysVal" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10590" sboTerm="SBO:0000627" id="R_MAR10590" name="Exchange of HisLysVal" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -433620,7 +432489,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10590">
+            <rdf:Description rdf:about="#R_MAR10590">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_hislysval_e"/>
@@ -433631,10 +432500,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03675e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03675e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10591" sboTerm="SBO:0000627" id="MAR10591" name="Exchange of HisMet" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10591" sboTerm="SBO:0000627" id="R_MAR10591" name="Exchange of HisMet" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -433642,7 +432511,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10591">
+            <rdf:Description rdf:about="#R_MAR10591">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_hismet_e"/>
@@ -433653,10 +432522,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03676e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03676e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10592" sboTerm="SBO:0000627" id="MAR10592" name="Exchange of HisMetGln" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10592" sboTerm="SBO:0000627" id="R_MAR10592" name="Exchange of HisMetGln" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -433664,7 +432533,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10592">
+            <rdf:Description rdf:about="#R_MAR10592">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_hismetgln_e"/>
@@ -433675,10 +432544,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03677e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03677e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10593" sboTerm="SBO:0000627" id="MAR10593" name="Exchange of HisPheArg" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10593" sboTerm="SBO:0000627" id="R_MAR10593" name="Exchange of HisPheArg" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -433686,7 +432555,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10593">
+            <rdf:Description rdf:about="#R_MAR10593">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_hisphearg_e"/>
@@ -433697,10 +432566,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03678e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03678e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10594" sboTerm="SBO:0000627" id="MAR10594" name="Exchange of HisProLys" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10594" sboTerm="SBO:0000627" id="R_MAR10594" name="Exchange of HisProLys" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -433708,7 +432577,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10594">
+            <rdf:Description rdf:about="#R_MAR10594">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_hisprolys_e"/>
@@ -433719,10 +432588,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03679e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03679e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10595" sboTerm="SBO:0000627" id="MAR10595" name="Exchange of HisTrpHis" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10595" sboTerm="SBO:0000627" id="R_MAR10595" name="Exchange of HisTrpHis" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -433730,7 +432599,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10595">
+            <rdf:Description rdf:about="#R_MAR10595">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_histrphis_e"/>
@@ -433741,10 +432610,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03680e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03680e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10596" sboTerm="SBO:0000627" id="MAR10596" name="Exchange of IleArgIle" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10596" sboTerm="SBO:0000627" id="R_MAR10596" name="Exchange of IleArgIle" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -433752,7 +432621,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10596">
+            <rdf:Description rdf:about="#R_MAR10596">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_ileargile_e"/>
@@ -433763,10 +432632,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03693e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03693e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10597" sboTerm="SBO:0000627" id="MAR10597" name="Exchange of IleAsnHis" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10597" sboTerm="SBO:0000627" id="R_MAR10597" name="Exchange of IleAsnHis" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -433774,7 +432643,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10597">
+            <rdf:Description rdf:about="#R_MAR10597">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_ileasnhis_e"/>
@@ -433785,10 +432654,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03694e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03694e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10598" sboTerm="SBO:0000627" id="MAR10598" name="Exchange of IleAsp" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10598" sboTerm="SBO:0000627" id="R_MAR10598" name="Exchange of IleAsp" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -433796,7 +432665,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10598">
+            <rdf:Description rdf:about="#R_MAR10598">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_ileasp_e"/>
@@ -433807,10 +432676,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03695e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03695e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10599" sboTerm="SBO:0000627" id="MAR10599" name="Exchange of IleGlnGlu" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10599" sboTerm="SBO:0000627" id="R_MAR10599" name="Exchange of IleGlnGlu" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -433818,7 +432687,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10599">
+            <rdf:Description rdf:about="#R_MAR10599">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_ileglnglu_e"/>
@@ -433829,10 +432698,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03696e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03696e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10600" sboTerm="SBO:0000627" id="MAR10600" name="Exchange of IleGlyArg" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10600" sboTerm="SBO:0000627" id="R_MAR10600" name="Exchange of IleGlyArg" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -433840,7 +432709,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10600">
+            <rdf:Description rdf:about="#R_MAR10600">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_ileglyarg_e"/>
@@ -433851,10 +432720,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03697e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03697e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10601" sboTerm="SBO:0000627" id="MAR10601" name="Exchange of IleProLys" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10601" sboTerm="SBO:0000627" id="R_MAR10601" name="Exchange of IleProLys" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -433862,7 +432731,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10601">
+            <rdf:Description rdf:about="#R_MAR10601">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_ileprolys_e"/>
@@ -433873,10 +432742,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03698e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03698e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10602" sboTerm="SBO:0000627" id="MAR10602" name="Exchange of IleSerArg" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10602" sboTerm="SBO:0000627" id="R_MAR10602" name="Exchange of IleSerArg" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -433884,7 +432753,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10602">
+            <rdf:Description rdf:about="#R_MAR10602">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_ileserarg_e"/>
@@ -433895,10 +432764,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03699e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03699e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10603" sboTerm="SBO:0000627" id="MAR10603" name="Exchange of IleTrptyr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10603" sboTerm="SBO:0000627" id="R_MAR10603" name="Exchange of IleTrptyr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -433906,7 +432775,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10603">
+            <rdf:Description rdf:about="#R_MAR10603">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_iletrptyr_e"/>
@@ -433917,10 +432786,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03700e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03700e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10604" sboTerm="SBO:0000627" id="MAR10604" name="Exchange of LeuAlaArg" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10604" sboTerm="SBO:0000627" id="R_MAR10604" name="Exchange of LeuAlaArg" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -433928,7 +432797,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10604">
+            <rdf:Description rdf:about="#R_MAR10604">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_leualaarg_e"/>
@@ -433939,10 +432808,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03711e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03711e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10605" sboTerm="SBO:0000627" id="MAR10605" name="Exchange of LeuAsnAsp" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10605" sboTerm="SBO:0000627" id="R_MAR10605" name="Exchange of LeuAsnAsp" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -433950,7 +432819,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10605">
+            <rdf:Description rdf:about="#R_MAR10605">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_leuasnasp_e"/>
@@ -433961,10 +432830,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03712e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03712e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10606" sboTerm="SBO:0000627" id="MAR10606" name="Exchange of LeuAspLys" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10606" sboTerm="SBO:0000627" id="R_MAR10606" name="Exchange of LeuAspLys" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -433972,7 +432841,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10606">
+            <rdf:Description rdf:about="#R_MAR10606">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_leuasplys_e"/>
@@ -433983,10 +432852,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03713e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03713e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10607" sboTerm="SBO:0000627" id="MAR10607" name="Exchange of LeuLeuTrp" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10607" sboTerm="SBO:0000627" id="R_MAR10607" name="Exchange of LeuLeuTrp" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -433994,7 +432863,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10607">
+            <rdf:Description rdf:about="#R_MAR10607">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_leuleutrp_e"/>
@@ -434005,10 +432874,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03716e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03716e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10608" sboTerm="SBO:0000627" id="MAR10608" name="Exchange of LeuPro" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10608" sboTerm="SBO:0000627" id="R_MAR10608" name="Exchange of LeuPro" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -434016,7 +432885,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10608">
+            <rdf:Description rdf:about="#R_MAR10608">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_leupro_e"/>
@@ -434027,10 +432896,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03717e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03717e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10609" sboTerm="SBO:0000627" id="MAR10609" name="Exchange of LeuProArg" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10609" sboTerm="SBO:0000627" id="R_MAR10609" name="Exchange of LeuProArg" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -434038,7 +432907,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10609">
+            <rdf:Description rdf:about="#R_MAR10609">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_leuproarg_e"/>
@@ -434049,10 +432918,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03718e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03718e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10610" sboTerm="SBO:0000627" id="MAR10610" name="Exchange of LeuSerTrp" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10610" sboTerm="SBO:0000627" id="R_MAR10610" name="Exchange of LeuSerTrp" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -434060,7 +432929,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10610">
+            <rdf:Description rdf:about="#R_MAR10610">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_leusertrp_e"/>
@@ -434071,10 +432940,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03719e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03719e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10611" sboTerm="SBO:0000627" id="MAR10611" name="Exchange of LeuTrp" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10611" sboTerm="SBO:0000627" id="R_MAR10611" name="Exchange of LeuTrp" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -434082,7 +432951,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10611">
+            <rdf:Description rdf:about="#R_MAR10611">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_leutrp_e"/>
@@ -434093,10 +432962,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03720e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03720e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10612" sboTerm="SBO:0000627" id="MAR10612" name="Exchange of LeuTrpArg" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10612" sboTerm="SBO:0000627" id="R_MAR10612" name="Exchange of LeuTrpArg" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -434104,7 +432973,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10612">
+            <rdf:Description rdf:about="#R_MAR10612">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_leutrparg_e"/>
@@ -434115,10 +432984,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03721e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03721e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10613" sboTerm="SBO:0000627" id="MAR10613" name="Exchange of Leutyrtyr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10613" sboTerm="SBO:0000627" id="R_MAR10613" name="Exchange of Leutyrtyr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -434126,7 +432995,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10613">
+            <rdf:Description rdf:about="#R_MAR10613">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_leutyrtyr_e"/>
@@ -434137,10 +433006,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03722e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03722e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10614" sboTerm="SBO:0000627" id="MAR10614" name="Exchange of LeuVal" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10614" sboTerm="SBO:0000627" id="R_MAR10614" name="Exchange of LeuVal" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -434148,7 +433017,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10614">
+            <rdf:Description rdf:about="#R_MAR10614">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_leuval_e"/>
@@ -434159,10 +433028,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03723e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03723e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10615" sboTerm="SBO:0000627" id="MAR10615" name="Exchange of LysArgLeu" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10615" sboTerm="SBO:0000627" id="R_MAR10615" name="Exchange of LysArgLeu" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -434170,7 +433039,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10615">
+            <rdf:Description rdf:about="#R_MAR10615">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_lysargleu_e"/>
@@ -434181,10 +433050,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03738e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03738e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10616" sboTerm="SBO:0000627" id="MAR10616" name="Exchange of LysCysHis" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10616" sboTerm="SBO:0000627" id="R_MAR10616" name="Exchange of LysCysHis" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -434192,7 +433061,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10616">
+            <rdf:Description rdf:about="#R_MAR10616">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_lyscyshis_e"/>
@@ -434203,10 +433072,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03739e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03739e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10617" sboTerm="SBO:0000627" id="MAR10617" name="Exchange of LysGlnPhe" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10617" sboTerm="SBO:0000627" id="R_MAR10617" name="Exchange of LysGlnPhe" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -434214,7 +433083,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10617">
+            <rdf:Description rdf:about="#R_MAR10617">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_lysglnphe_e"/>
@@ -434225,10 +433094,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03740e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03740e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10618" sboTerm="SBO:0000627" id="MAR10618" name="Exchange of LysGluGlu" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10618" sboTerm="SBO:0000627" id="R_MAR10618" name="Exchange of LysGluGlu" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -434236,7 +433105,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10618">
+            <rdf:Description rdf:about="#R_MAR10618">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_lysgluglu_e"/>
@@ -434247,10 +433116,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03741e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03741e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10619" sboTerm="SBO:0000627" id="MAR10619" name="Exchange of LysLysLys" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10619" sboTerm="SBO:0000627" id="R_MAR10619" name="Exchange of LysLysLys" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -434258,7 +433127,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10619">
+            <rdf:Description rdf:about="#R_MAR10619">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_lyslyslys_e"/>
@@ -434269,10 +433138,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03742e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03742e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10620" sboTerm="SBO:0000627" id="MAR10620" name="Exchange of LysPheIle" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10620" sboTerm="SBO:0000627" id="R_MAR10620" name="Exchange of LysPheIle" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -434280,7 +433149,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10620">
+            <rdf:Description rdf:about="#R_MAR10620">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_lyspheile_e"/>
@@ -434291,10 +433160,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03743e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03743e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10621" sboTerm="SBO:0000627" id="MAR10621" name="Exchange of LysTrpArg" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10621" sboTerm="SBO:0000627" id="R_MAR10621" name="Exchange of LysTrpArg" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -434302,7 +433171,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10621">
+            <rdf:Description rdf:about="#R_MAR10621">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_lystrparg_e"/>
@@ -434313,10 +433182,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03744e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03744e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10622" sboTerm="SBO:0000627" id="MAR10622" name="Exchange of LystyrIle" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10622" sboTerm="SBO:0000627" id="R_MAR10622" name="Exchange of LystyrIle" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -434324,7 +433193,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10622">
+            <rdf:Description rdf:about="#R_MAR10622">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_lystyrile_e"/>
@@ -434335,10 +433204,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03745e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03745e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10623" sboTerm="SBO:0000627" id="MAR10623" name="Exchange of LysValPhe" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10623" sboTerm="SBO:0000627" id="R_MAR10623" name="Exchange of LysValPhe" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -434346,7 +433215,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10623">
+            <rdf:Description rdf:about="#R_MAR10623">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_lysvalphe_e"/>
@@ -434357,10 +433226,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03746e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03746e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10624" sboTerm="SBO:0000627" id="MAR10624" name="Exchange of LysValTrp" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10624" sboTerm="SBO:0000627" id="R_MAR10624" name="Exchange of LysValTrp" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -434368,7 +433237,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10624">
+            <rdf:Description rdf:about="#R_MAR10624">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_lysvaltrp_e"/>
@@ -434379,10 +433248,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03747e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03747e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10625" sboTerm="SBO:0000627" id="MAR10625" name="Exchange of MetArgLeu" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10625" sboTerm="SBO:0000627" id="R_MAR10625" name="Exchange of MetArgLeu" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -434390,7 +433259,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10625">
+            <rdf:Description rdf:about="#R_MAR10625">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_metargleu_e"/>
@@ -434401,10 +433270,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03760e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03760e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10626" sboTerm="SBO:0000627" id="MAR10626" name="Exchange of MetAsntyr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10626" sboTerm="SBO:0000627" id="R_MAR10626" name="Exchange of MetAsntyr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -434412,7 +433281,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10626">
+            <rdf:Description rdf:about="#R_MAR10626">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_metasntyr_e"/>
@@ -434423,10 +433292,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03761e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03761e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10627" sboTerm="SBO:0000627" id="MAR10627" name="Exchange of MetGlntyr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10627" sboTerm="SBO:0000627" id="R_MAR10627" name="Exchange of MetGlntyr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -434434,7 +433303,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10627">
+            <rdf:Description rdf:about="#R_MAR10627">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_metglntyr_e"/>
@@ -434445,10 +433314,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03762e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03762e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10628" sboTerm="SBO:0000627" id="MAR10628" name="Exchange of MetGlyArg" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10628" sboTerm="SBO:0000627" id="R_MAR10628" name="Exchange of MetGlyArg" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -434456,7 +433325,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10628">
+            <rdf:Description rdf:about="#R_MAR10628">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_metglyarg_e"/>
@@ -434467,10 +433336,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03763e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03763e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10629" sboTerm="SBO:0000627" id="MAR10629" name="Exchange of MetHisLys" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10629" sboTerm="SBO:0000627" id="R_MAR10629" name="Exchange of MetHisLys" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -434478,7 +433347,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10629">
+            <rdf:Description rdf:about="#R_MAR10629">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_methislys_e"/>
@@ -434489,10 +433358,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03764e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03764e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10630" sboTerm="SBO:0000627" id="MAR10630" name="Exchange of MetMetIle" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10630" sboTerm="SBO:0000627" id="R_MAR10630" name="Exchange of MetMetIle" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -434500,7 +433369,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10630">
+            <rdf:Description rdf:about="#R_MAR10630">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_metmetile_e"/>
@@ -434511,10 +433380,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03767e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03767e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10631" sboTerm="SBO:0000627" id="MAR10631" name="Exchange of MetPheArg" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10631" sboTerm="SBO:0000627" id="R_MAR10631" name="Exchange of MetPheArg" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -434522,7 +433391,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10631">
+            <rdf:Description rdf:about="#R_MAR10631">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_metphearg_e"/>
@@ -434533,10 +433402,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03768e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03768e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10632" sboTerm="SBO:0000627" id="MAR10632" name="Exchange of MetTrpPhe" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10632" sboTerm="SBO:0000627" id="R_MAR10632" name="Exchange of MetTrpPhe" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -434544,7 +433413,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10632">
+            <rdf:Description rdf:about="#R_MAR10632">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_mettrpphe_e"/>
@@ -434555,10 +433424,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03769e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03769e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10633" sboTerm="SBO:0000627" id="MAR10633" name="Exchange of PheAsnMet" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10633" sboTerm="SBO:0000627" id="R_MAR10633" name="Exchange of PheAsnMet" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -434566,7 +433435,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10633">
+            <rdf:Description rdf:about="#R_MAR10633">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_pheasnmet_e"/>
@@ -434577,10 +433446,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03864e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03864e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10634" sboTerm="SBO:0000627" id="MAR10634" name="Exchange of PheAsp" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10634" sboTerm="SBO:0000627" id="R_MAR10634" name="Exchange of PheAsp" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -434588,7 +433457,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10634">
+            <rdf:Description rdf:about="#R_MAR10634">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_pheasp_e"/>
@@ -434599,10 +433468,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03865e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03865e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10635" sboTerm="SBO:0000627" id="MAR10635" name="Exchange of PheGlnPhe" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10635" sboTerm="SBO:0000627" id="R_MAR10635" name="Exchange of PheGlnPhe" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -434610,7 +433479,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10635">
+            <rdf:Description rdf:about="#R_MAR10635">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_pheglnphe_e"/>
@@ -434621,10 +433490,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03866e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03866e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10636" sboTerm="SBO:0000627" id="MAR10636" name="Exchange of PheLeu" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10636" sboTerm="SBO:0000627" id="R_MAR10636" name="Exchange of PheLeu" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -434632,7 +433501,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10636">
+            <rdf:Description rdf:about="#R_MAR10636">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_pheleu_e"/>
@@ -434643,10 +433512,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03867e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03867e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10637" sboTerm="SBO:0000627" id="MAR10637" name="Exchange of PheLeuAsp" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10637" sboTerm="SBO:0000627" id="R_MAR10637" name="Exchange of PheLeuAsp" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -434654,7 +433523,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10637">
+            <rdf:Description rdf:about="#R_MAR10637">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_pheleuasp_e"/>
@@ -434665,10 +433534,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03868e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03868e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10638" sboTerm="SBO:0000627" id="MAR10638" name="Exchange of PheLeuHis" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10638" sboTerm="SBO:0000627" id="R_MAR10638" name="Exchange of PheLeuHis" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -434676,7 +433545,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10638">
+            <rdf:Description rdf:about="#R_MAR10638">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_pheleuhis_e"/>
@@ -434687,10 +433556,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03869e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03869e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10639" sboTerm="SBO:0000627" id="MAR10639" name="Exchange of PheLysAla" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10639" sboTerm="SBO:0000627" id="R_MAR10639" name="Exchange of PheLysAla" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -434698,7 +433567,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10639">
+            <rdf:Description rdf:about="#R_MAR10639">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_phelysala_e"/>
@@ -434709,10 +433578,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03870e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03870e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10640" sboTerm="SBO:0000627" id="MAR10640" name="Exchange of PheLysPro" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10640" sboTerm="SBO:0000627" id="R_MAR10640" name="Exchange of PheLysPro" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -434720,7 +433589,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10640">
+            <rdf:Description rdf:about="#R_MAR10640">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_phelyspro_e"/>
@@ -434731,10 +433600,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03871e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03871e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10641" sboTerm="SBO:0000627" id="MAR10641" name="Exchange of PhePhe" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10641" sboTerm="SBO:0000627" id="R_MAR10641" name="Exchange of PhePhe" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -434742,7 +433611,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10641">
+            <rdf:Description rdf:about="#R_MAR10641">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_phephe_e"/>
@@ -434753,10 +433622,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03872e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03872e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10642" sboTerm="SBO:0000627" id="MAR10642" name="Exchange of PhePheAsn" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10642" sboTerm="SBO:0000627" id="R_MAR10642" name="Exchange of PhePheAsn" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -434764,7 +433633,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10642">
+            <rdf:Description rdf:about="#R_MAR10642">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_phepheasn_e"/>
@@ -434775,10 +433644,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03873e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03873e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10643" sboTerm="SBO:0000627" id="MAR10643" name="Exchange of PhePheThr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10643" sboTerm="SBO:0000627" id="R_MAR10643" name="Exchange of PhePheThr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -434786,7 +433655,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10643">
+            <rdf:Description rdf:about="#R_MAR10643">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_phephethr_e"/>
@@ -434797,10 +433666,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03874e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03874e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10644" sboTerm="SBO:0000627" id="MAR10644" name="Exchange of PheProArg" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10644" sboTerm="SBO:0000627" id="R_MAR10644" name="Exchange of PheProArg" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -434808,7 +433677,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10644">
+            <rdf:Description rdf:about="#R_MAR10644">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_pheproarg_e"/>
@@ -434819,10 +433688,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03875e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03875e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10645" sboTerm="SBO:0000627" id="MAR10645" name="Exchange of PheSerTrp" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10645" sboTerm="SBO:0000627" id="R_MAR10645" name="Exchange of PheSerTrp" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -434830,7 +433699,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10645">
+            <rdf:Description rdf:about="#R_MAR10645">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_phesertrp_e"/>
@@ -434841,10 +433710,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03876e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03876e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10646" sboTerm="SBO:0000627" id="MAR10646" name="Exchange of PheThrLys" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10646" sboTerm="SBO:0000627" id="R_MAR10646" name="Exchange of PheThrLys" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -434852,7 +433721,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10646">
+            <rdf:Description rdf:about="#R_MAR10646">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_phethrlys_e"/>
@@ -434863,10 +433732,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03877e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03877e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10647" sboTerm="SBO:0000627" id="MAR10647" name="Exchange of PheTrpLeu" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10647" sboTerm="SBO:0000627" id="R_MAR10647" name="Exchange of PheTrpLeu" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -434874,7 +433743,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10647">
+            <rdf:Description rdf:about="#R_MAR10647">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_phetrpleu_e"/>
@@ -434885,10 +433754,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03878e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03878e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10648" sboTerm="SBO:0000627" id="MAR10648" name="Exchange of Phetyr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10648" sboTerm="SBO:0000627" id="R_MAR10648" name="Exchange of Phetyr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -434896,7 +433765,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10648">
+            <rdf:Description rdf:about="#R_MAR10648">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_phetyr_e"/>
@@ -434907,10 +433776,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03879e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03879e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10649" sboTerm="SBO:0000627" id="MAR10649" name="Exchange of PhetyrGln" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10649" sboTerm="SBO:0000627" id="R_MAR10649" name="Exchange of PhetyrGln" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -434918,7 +433787,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10649">
+            <rdf:Description rdf:about="#R_MAR10649">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_phetyrgln_e"/>
@@ -434929,10 +433798,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03880e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03880e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10650" sboTerm="SBO:0000627" id="MAR10650" name="Exchange of PhetyrLys" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10650" sboTerm="SBO:0000627" id="R_MAR10650" name="Exchange of PhetyrLys" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -434940,7 +433809,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10650">
+            <rdf:Description rdf:about="#R_MAR10650">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_phetyrlys_e"/>
@@ -434951,10 +433820,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03881e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03881e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10651" sboTerm="SBO:0000627" id="MAR10651" name="Exchange of ProArgAsp" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10651" sboTerm="SBO:0000627" id="R_MAR10651" name="Exchange of ProArgAsp" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -434962,7 +433831,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10651">
+            <rdf:Description rdf:about="#R_MAR10651">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_proargasp_e"/>
@@ -434973,10 +433842,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03888e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03888e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10652" sboTerm="SBO:0000627" id="MAR10652" name="Exchange of ProArgCys" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10652" sboTerm="SBO:0000627" id="R_MAR10652" name="Exchange of ProArgCys" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -434984,7 +433853,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10652">
+            <rdf:Description rdf:about="#R_MAR10652">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_proargcys_e"/>
@@ -434995,10 +433864,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03889e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03889e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10653" sboTerm="SBO:0000627" id="MAR10653" name="Exchange of ProAsnCys" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10653" sboTerm="SBO:0000627" id="R_MAR10653" name="Exchange of ProAsnCys" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -435006,7 +433875,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10653">
+            <rdf:Description rdf:about="#R_MAR10653">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_proasncys_e"/>
@@ -435017,10 +433886,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03890e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03890e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10654" sboTerm="SBO:0000627" id="MAR10654" name="Exchange of ProCys" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10654" sboTerm="SBO:0000627" id="R_MAR10654" name="Exchange of ProCys" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -435028,7 +433897,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10654">
+            <rdf:Description rdf:about="#R_MAR10654">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_procys_e"/>
@@ -435039,10 +433908,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03891e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03891e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10655" sboTerm="SBO:0000627" id="MAR10655" name="Exchange of ProGlnPro" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10655" sboTerm="SBO:0000627" id="R_MAR10655" name="Exchange of ProGlnPro" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -435050,7 +433919,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10655">
+            <rdf:Description rdf:about="#R_MAR10655">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_proglnpro_e"/>
@@ -435061,10 +433930,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03894e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03894e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10656" sboTerm="SBO:0000627" id="MAR10656" name="Exchange of ProGluLys" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10656" sboTerm="SBO:0000627" id="R_MAR10656" name="Exchange of ProGluLys" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -435072,7 +433941,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10656">
+            <rdf:Description rdf:about="#R_MAR10656">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_proglulys_e"/>
@@ -435083,10 +433952,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03895e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03895e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10657" sboTerm="SBO:0000627" id="MAR10657" name="Exchange of ProHis" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10657" sboTerm="SBO:0000627" id="R_MAR10657" name="Exchange of ProHis" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -435094,7 +433963,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10657">
+            <rdf:Description rdf:about="#R_MAR10657">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_prohis_e"/>
@@ -435105,10 +433974,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03897e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03897e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10658" sboTerm="SBO:0000627" id="MAR10658" name="Exchange of ProHistyr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10658" sboTerm="SBO:0000627" id="R_MAR10658" name="Exchange of ProHistyr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -435116,7 +433985,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10658">
+            <rdf:Description rdf:about="#R_MAR10658">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_prohistyr_e"/>
@@ -435127,10 +433996,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03898e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03898e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10659" sboTerm="SBO:0000627" id="MAR10659" name="Exchange of ProLeuArg" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10659" sboTerm="SBO:0000627" id="R_MAR10659" name="Exchange of ProLeuArg" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -435138,7 +434007,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10659">
+            <rdf:Description rdf:about="#R_MAR10659">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_proleuarg_e"/>
@@ -435149,10 +434018,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03899e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03899e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10660" sboTerm="SBO:0000627" id="MAR10660" name="Exchange of ProLysPro" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10660" sboTerm="SBO:0000627" id="R_MAR10660" name="Exchange of ProLysPro" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -435160,7 +434029,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10660">
+            <rdf:Description rdf:about="#R_MAR10660">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_prolyspro_e"/>
@@ -435171,10 +434040,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03900e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03900e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10661" sboTerm="SBO:0000627" id="MAR10661" name="Exchange of ProPhe" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10661" sboTerm="SBO:0000627" id="R_MAR10661" name="Exchange of ProPhe" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -435182,7 +434051,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10661">
+            <rdf:Description rdf:about="#R_MAR10661">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_prophe_e"/>
@@ -435193,10 +434062,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03901e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03901e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10662" sboTerm="SBO:0000627" id="MAR10662" name="Exchange of ProProArg" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10662" sboTerm="SBO:0000627" id="R_MAR10662" name="Exchange of ProProArg" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -435204,7 +434073,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10662">
+            <rdf:Description rdf:about="#R_MAR10662">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_proproarg_e"/>
@@ -435215,10 +434084,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03902e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03902e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10663" sboTerm="SBO:0000627" id="MAR10663" name="Exchange of ProProPro" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10663" sboTerm="SBO:0000627" id="R_MAR10663" name="Exchange of ProProPro" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -435226,7 +434095,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10663">
+            <rdf:Description rdf:about="#R_MAR10663">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_propropro_e"/>
@@ -435237,10 +434106,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03903e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03903e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10664" sboTerm="SBO:0000627" id="MAR10664" name="Exchange of ProTrpLys" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10664" sboTerm="SBO:0000627" id="R_MAR10664" name="Exchange of ProTrpLys" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -435248,7 +434117,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10664">
+            <rdf:Description rdf:about="#R_MAR10664">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_protrplys_e"/>
@@ -435259,10 +434128,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03904e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03904e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10665" sboTerm="SBO:0000627" id="MAR10665" name="Exchange of ProTrpThr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10665" sboTerm="SBO:0000627" id="R_MAR10665" name="Exchange of ProTrpThr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -435270,7 +434139,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10665">
+            <rdf:Description rdf:about="#R_MAR10665">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_protrpthr_e"/>
@@ -435281,10 +434150,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03905e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03905e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10666" sboTerm="SBO:0000627" id="MAR10666" name="Exchange of ProValGln" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10666" sboTerm="SBO:0000627" id="R_MAR10666" name="Exchange of ProValGln" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -435292,7 +434161,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10666">
+            <rdf:Description rdf:about="#R_MAR10666">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_provalgln_e"/>
@@ -435303,10 +434172,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03906e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03906e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10667" sboTerm="SBO:0000627" id="MAR10667" name="Exchange of SerArgAla" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10667" sboTerm="SBO:0000627" id="R_MAR10667" name="Exchange of SerArgAla" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -435314,7 +434183,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10667">
+            <rdf:Description rdf:about="#R_MAR10667">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_serargala_e"/>
@@ -435325,10 +434194,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03925e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03925e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10668" sboTerm="SBO:0000627" id="MAR10668" name="Exchange of SerArgTrp" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10668" sboTerm="SBO:0000627" id="R_MAR10668" name="Exchange of SerArgTrp" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -435336,7 +434205,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10668">
+            <rdf:Description rdf:about="#R_MAR10668">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_serargtrp_e"/>
@@ -435347,10 +434216,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03926e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03926e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10669" sboTerm="SBO:0000627" id="MAR10669" name="Exchange of SerCysArg" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10669" sboTerm="SBO:0000627" id="R_MAR10669" name="Exchange of SerCysArg" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -435358,7 +434227,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10669">
+            <rdf:Description rdf:about="#R_MAR10669">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_sercysarg_e"/>
@@ -435369,10 +434238,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03927e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03927e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10670" sboTerm="SBO:0000627" id="MAR10670" name="Exchange of SerGlyGlu" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10670" sboTerm="SBO:0000627" id="R_MAR10670" name="Exchange of SerGlyGlu" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -435380,7 +434249,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10670">
+            <rdf:Description rdf:about="#R_MAR10670">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_serglyglu_e"/>
@@ -435391,10 +434260,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03928e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03928e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10671" sboTerm="SBO:0000627" id="MAR10671" name="Exchange of SerLysHis" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10671" sboTerm="SBO:0000627" id="R_MAR10671" name="Exchange of SerLysHis" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -435402,7 +434271,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10671">
+            <rdf:Description rdf:about="#R_MAR10671">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_serlyshis_e"/>
@@ -435413,10 +434282,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03929e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03929e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10672" sboTerm="SBO:0000627" id="MAR10672" name="Exchange of SerPheLys" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10672" sboTerm="SBO:0000627" id="R_MAR10672" name="Exchange of SerPheLys" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -435424,7 +434293,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10672">
+            <rdf:Description rdf:about="#R_MAR10672">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_serphelys_e"/>
@@ -435435,10 +434304,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03930e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03930e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10673" sboTerm="SBO:0000627" id="MAR10673" name="Exchange of SerTrpHis" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10673" sboTerm="SBO:0000627" id="R_MAR10673" name="Exchange of SerTrpHis" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -435446,7 +434315,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10673">
+            <rdf:Description rdf:about="#R_MAR10673">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_sertrphis_e"/>
@@ -435457,10 +434326,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03931e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03931e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10674" sboTerm="SBO:0000627" id="MAR10674" name="Exchange of ThrArgtyr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10674" sboTerm="SBO:0000627" id="R_MAR10674" name="Exchange of ThrArgtyr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -435468,7 +434337,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10674">
+            <rdf:Description rdf:about="#R_MAR10674">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_thrargtyr_e"/>
@@ -435479,10 +434348,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03983e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03983e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10675" sboTerm="SBO:0000627" id="MAR10675" name="Exchange of ThrAsntyr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10675" sboTerm="SBO:0000627" id="R_MAR10675" name="Exchange of ThrAsntyr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -435490,7 +434359,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10675">
+            <rdf:Description rdf:about="#R_MAR10675">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_thrasntyr_e"/>
@@ -435501,10 +434370,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03984e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03984e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10676" sboTerm="SBO:0000627" id="MAR10676" name="Exchange of ThrGlnGlu" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10676" sboTerm="SBO:0000627" id="R_MAR10676" name="Exchange of ThrGlnGlu" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -435512,7 +434381,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10676">
+            <rdf:Description rdf:about="#R_MAR10676">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_thrglnglu_e"/>
@@ -435523,10 +434392,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03986e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03986e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10677" sboTerm="SBO:0000627" id="MAR10677" name="Exchange of ThrGlntyr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10677" sboTerm="SBO:0000627" id="R_MAR10677" name="Exchange of ThrGlntyr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -435534,7 +434403,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10677">
+            <rdf:Description rdf:about="#R_MAR10677">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_thrglntyr_e"/>
@@ -435545,10 +434414,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03987e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03987e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10678" sboTerm="SBO:0000627" id="MAR10678" name="Exchange of ThrHisHis" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10678" sboTerm="SBO:0000627" id="R_MAR10678" name="Exchange of ThrHisHis" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -435556,7 +434425,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10678">
+            <rdf:Description rdf:about="#R_MAR10678">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_thrhishis_e"/>
@@ -435567,10 +434436,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03988e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03988e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10679" sboTerm="SBO:0000627" id="MAR10679" name="Exchange of ThrIleArg" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10679" sboTerm="SBO:0000627" id="R_MAR10679" name="Exchange of ThrIleArg" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -435578,7 +434447,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10679">
+            <rdf:Description rdf:about="#R_MAR10679">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_thrilearg_e"/>
@@ -435589,10 +434458,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03989e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03989e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10680" sboTerm="SBO:0000627" id="MAR10680" name="Exchange of ThrMetArg" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10680" sboTerm="SBO:0000627" id="R_MAR10680" name="Exchange of ThrMetArg" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -435600,7 +434469,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10680">
+            <rdf:Description rdf:about="#R_MAR10680">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_thrmetarg_e"/>
@@ -435611,10 +434480,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03990e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03990e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10681" sboTerm="SBO:0000627" id="MAR10681" name="Exchange of ThrPheArg" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10681" sboTerm="SBO:0000627" id="R_MAR10681" name="Exchange of ThrPheArg" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -435622,7 +434491,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10681">
+            <rdf:Description rdf:about="#R_MAR10681">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_thrphearg_e"/>
@@ -435633,10 +434502,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03991e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03991e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10682" sboTerm="SBO:0000627" id="MAR10682" name="Exchange of ThrSerArg" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10682" sboTerm="SBO:0000627" id="R_MAR10682" name="Exchange of ThrSerArg" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -435644,7 +434513,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10682">
+            <rdf:Description rdf:about="#R_MAR10682">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_thrserarg_e"/>
@@ -435655,10 +434524,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03992e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03992e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10683" sboTerm="SBO:0000627" id="MAR10683" name="Exchange of ThrThrArg" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10683" sboTerm="SBO:0000627" id="R_MAR10683" name="Exchange of ThrThrArg" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -435666,7 +434535,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10683">
+            <rdf:Description rdf:about="#R_MAR10683">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_thrthrarg_e"/>
@@ -435677,10 +434546,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03993e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03993e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10684" sboTerm="SBO:0000627" id="MAR10684" name="Exchange of ThrtyrMet" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10684" sboTerm="SBO:0000627" id="R_MAR10684" name="Exchange of ThrtyrMet" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -435688,7 +434557,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10684">
+            <rdf:Description rdf:about="#R_MAR10684">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_thrtyrmet_e"/>
@@ -435699,10 +434568,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03994e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03994e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10685" sboTerm="SBO:0000627" id="MAR10685" name="Exchange of TrpAlaPro" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10685" sboTerm="SBO:0000627" id="R_MAR10685" name="Exchange of TrpAlaPro" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -435710,7 +434579,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10685">
+            <rdf:Description rdf:about="#R_MAR10685">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_trpalapro_e"/>
@@ -435721,10 +434590,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM04008e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04008e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10686" sboTerm="SBO:0000627" id="MAR10686" name="Exchange of TrpArgAla" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10686" sboTerm="SBO:0000627" id="R_MAR10686" name="Exchange of TrpArgAla" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -435732,7 +434601,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10686">
+            <rdf:Description rdf:about="#R_MAR10686">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_trpargala_e"/>
@@ -435743,10 +434612,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM04009e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04009e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10687" sboTerm="SBO:0000627" id="MAR10687" name="Exchange of TrpAspAsp" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10687" sboTerm="SBO:0000627" id="R_MAR10687" name="Exchange of TrpAspAsp" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -435754,7 +434623,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10687">
+            <rdf:Description rdf:about="#R_MAR10687">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_trpaspasp_e"/>
@@ -435765,10 +434634,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM04010e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04010e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10688" sboTerm="SBO:0000627" id="MAR10688" name="Exchange of TrpGlnGln" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10688" sboTerm="SBO:0000627" id="R_MAR10688" name="Exchange of TrpGlnGln" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -435776,7 +434645,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10688">
+            <rdf:Description rdf:about="#R_MAR10688">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_trpglngln_e"/>
@@ -435787,10 +434656,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM04011e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04011e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10689" sboTerm="SBO:0000627" id="MAR10689" name="Exchange of TrpGluGly" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10689" sboTerm="SBO:0000627" id="R_MAR10689" name="Exchange of TrpGluGly" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -435798,7 +434667,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10689">
+            <rdf:Description rdf:about="#R_MAR10689">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_trpglugly_e"/>
@@ -435809,10 +434678,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM04012e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04012e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10690" sboTerm="SBO:0000627" id="MAR10690" name="Exchange of TrpGluLeu" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10690" sboTerm="SBO:0000627" id="R_MAR10690" name="Exchange of TrpGluLeu" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -435820,7 +434689,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10690">
+            <rdf:Description rdf:about="#R_MAR10690">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_trpgluleu_e"/>
@@ -435831,10 +434700,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM04013e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04013e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10691" sboTerm="SBO:0000627" id="MAR10691" name="Exchange of TrpGluPro" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10691" sboTerm="SBO:0000627" id="R_MAR10691" name="Exchange of TrpGluPro" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -435842,7 +434711,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10691">
+            <rdf:Description rdf:about="#R_MAR10691">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_trpglupro_e"/>
@@ -435853,10 +434722,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM04014e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04014e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10692" sboTerm="SBO:0000627" id="MAR10692" name="Exchange of TrpGlutyr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10692" sboTerm="SBO:0000627" id="R_MAR10692" name="Exchange of TrpGlutyr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -435864,7 +434733,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10692">
+            <rdf:Description rdf:about="#R_MAR10692">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_trpglutyr_e"/>
@@ -435875,10 +434744,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM04015e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04015e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10693" sboTerm="SBO:0000627" id="MAR10693" name="Exchange of TrpGlyLeu" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10693" sboTerm="SBO:0000627" id="R_MAR10693" name="Exchange of TrpGlyLeu" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -435886,7 +434755,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10693">
+            <rdf:Description rdf:about="#R_MAR10693">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_trpglyleu_e"/>
@@ -435897,10 +434766,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM04017e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04017e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10694" sboTerm="SBO:0000627" id="MAR10694" name="Exchange of TrpGlyPhe" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10694" sboTerm="SBO:0000627" id="R_MAR10694" name="Exchange of TrpGlyPhe" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -435908,7 +434777,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10694">
+            <rdf:Description rdf:about="#R_MAR10694">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_trpglyphe_e"/>
@@ -435919,10 +434788,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM04018e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04018e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10695" sboTerm="SBO:0000627" id="MAR10695" name="Exchange of TrpGlyVal" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10695" sboTerm="SBO:0000627" id="R_MAR10695" name="Exchange of TrpGlyVal" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -435930,7 +434799,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10695">
+            <rdf:Description rdf:about="#R_MAR10695">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_trpglyval_e"/>
@@ -435941,10 +434810,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM04019e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04019e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10696" sboTerm="SBO:0000627" id="MAR10696" name="Exchange of TrpHisMet" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10696" sboTerm="SBO:0000627" id="R_MAR10696" name="Exchange of TrpHisMet" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -435952,7 +434821,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10696">
+            <rdf:Description rdf:about="#R_MAR10696">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_trphismet_e"/>
@@ -435963,10 +434832,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM04020e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04020e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10697" sboTerm="SBO:0000627" id="MAR10697" name="Exchange of TrpIleLys" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10697" sboTerm="SBO:0000627" id="R_MAR10697" name="Exchange of TrpIleLys" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -435974,7 +434843,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10697">
+            <rdf:Description rdf:about="#R_MAR10697">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_trpilelys_e"/>
@@ -435985,10 +434854,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM04021e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04021e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10698" sboTerm="SBO:0000627" id="MAR10698" name="Exchange of TrpIleTrp" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10698" sboTerm="SBO:0000627" id="R_MAR10698" name="Exchange of TrpIleTrp" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -435996,7 +434865,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10698">
+            <rdf:Description rdf:about="#R_MAR10698">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_trpiletrp_e"/>
@@ -436007,10 +434876,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM04022e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04022e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10699" sboTerm="SBO:0000627" id="MAR10699" name="Exchange of TrpLeuVal" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10699" sboTerm="SBO:0000627" id="R_MAR10699" name="Exchange of TrpLeuVal" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -436018,7 +434887,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10699">
+            <rdf:Description rdf:about="#R_MAR10699">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_trpleuval_e"/>
@@ -436029,10 +434898,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM04023e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04023e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10700" sboTerm="SBO:0000627" id="MAR10700" name="Exchange of TrpLys" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10700" sboTerm="SBO:0000627" id="R_MAR10700" name="Exchange of TrpLys" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -436040,7 +434909,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10700">
+            <rdf:Description rdf:about="#R_MAR10700">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_trplys_e"/>
@@ -436051,10 +434920,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM04024e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04024e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10701" sboTerm="SBO:0000627" id="MAR10701" name="Exchange of TrpMetArg" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10701" sboTerm="SBO:0000627" id="R_MAR10701" name="Exchange of TrpMetArg" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -436062,7 +434931,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10701">
+            <rdf:Description rdf:about="#R_MAR10701">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_trpmetarg_e"/>
@@ -436073,10 +434942,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM04025e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04025e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10702" sboTerm="SBO:0000627" id="MAR10702" name="Exchange of TrpMetVal" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10702" sboTerm="SBO:0000627" id="R_MAR10702" name="Exchange of TrpMetVal" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -436084,7 +434953,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10702">
+            <rdf:Description rdf:about="#R_MAR10702">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_trpmetval_e"/>
@@ -436095,10 +434964,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM04026e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04026e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10703" sboTerm="SBO:0000627" id="MAR10703" name="Exchange of TrpPhe" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10703" sboTerm="SBO:0000627" id="R_MAR10703" name="Exchange of TrpPhe" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -436106,7 +434975,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10703">
+            <rdf:Description rdf:about="#R_MAR10703">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_trpphe_e"/>
@@ -436117,10 +434986,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM04027e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04027e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10704" sboTerm="SBO:0000627" id="MAR10704" name="Exchange of TrpProGly" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10704" sboTerm="SBO:0000627" id="R_MAR10704" name="Exchange of TrpProGly" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -436128,7 +434997,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10704">
+            <rdf:Description rdf:about="#R_MAR10704">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_trpprogly_e"/>
@@ -436139,10 +435008,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM04028e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04028e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10705" sboTerm="SBO:0000627" id="MAR10705" name="Exchange of TrpProLeu" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10705" sboTerm="SBO:0000627" id="R_MAR10705" name="Exchange of TrpProLeu" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -436150,7 +435019,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10705">
+            <rdf:Description rdf:about="#R_MAR10705">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_trpproleu_e"/>
@@ -436161,10 +435030,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM04029e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04029e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10706" sboTerm="SBO:0000627" id="MAR10706" name="Exchange of TrpProVal" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10706" sboTerm="SBO:0000627" id="R_MAR10706" name="Exchange of TrpProVal" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -436172,7 +435041,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10706">
+            <rdf:Description rdf:about="#R_MAR10706">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_trpproval_e"/>
@@ -436183,10 +435052,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM04030e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04030e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10707" sboTerm="SBO:0000627" id="MAR10707" name="Exchange of TrpSertyr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10707" sboTerm="SBO:0000627" id="R_MAR10707" name="Exchange of TrpSertyr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -436194,7 +435063,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10707">
+            <rdf:Description rdf:about="#R_MAR10707">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_trpsertyr_e"/>
@@ -436205,10 +435074,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM04031e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04031e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10708" sboTerm="SBO:0000627" id="MAR10708" name="Exchange of TrpThrGlu" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10708" sboTerm="SBO:0000627" id="R_MAR10708" name="Exchange of TrpThrGlu" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -436216,7 +435085,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10708">
+            <rdf:Description rdf:about="#R_MAR10708">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_trpthrglu_e"/>
@@ -436227,10 +435096,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM04032e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04032e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10709" sboTerm="SBO:0000627" id="MAR10709" name="Exchange of TrpThrIle" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10709" sboTerm="SBO:0000627" id="R_MAR10709" name="Exchange of TrpThrIle" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -436238,7 +435107,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10709">
+            <rdf:Description rdf:about="#R_MAR10709">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_trpthrile_e"/>
@@ -436249,10 +435118,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM04033e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04033e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10710" sboTerm="SBO:0000627" id="MAR10710" name="Exchange of TrpThrtyr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10710" sboTerm="SBO:0000627" id="R_MAR10710" name="Exchange of TrpThrtyr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -436260,7 +435129,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10710">
+            <rdf:Description rdf:about="#R_MAR10710">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_trpthrtyr_e"/>
@@ -436271,10 +435140,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM04034e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04034e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10711" sboTerm="SBO:0000627" id="MAR10711" name="Exchange of TrptyrGln" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10711" sboTerm="SBO:0000627" id="R_MAR10711" name="Exchange of TrptyrGln" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -436282,7 +435151,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10711">
+            <rdf:Description rdf:about="#R_MAR10711">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_trptyrgln_e"/>
@@ -436293,10 +435162,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM04035e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04035e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10712" sboTerm="SBO:0000627" id="MAR10712" name="Exchange of Trptyrtyr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10712" sboTerm="SBO:0000627" id="R_MAR10712" name="Exchange of Trptyrtyr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -436304,7 +435173,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10712">
+            <rdf:Description rdf:about="#R_MAR10712">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_trptyrtyr_e"/>
@@ -436315,10 +435184,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM04036e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04036e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10713" sboTerm="SBO:0000627" id="MAR10713" name="Exchange of TrpValAsp" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10713" sboTerm="SBO:0000627" id="R_MAR10713" name="Exchange of TrpValAsp" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -436326,7 +435195,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10713">
+            <rdf:Description rdf:about="#R_MAR10713">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_trpvalasp_e"/>
@@ -436337,10 +435206,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM04037e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04037e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10714" sboTerm="SBO:0000627" id="MAR10714" name="Exchange of TyrAla" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10714" sboTerm="SBO:0000627" id="R_MAR10714" name="Exchange of TyrAla" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -436348,7 +435217,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10714">
+            <rdf:Description rdf:about="#R_MAR10714">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_tyrala_e"/>
@@ -436359,10 +435228,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM04043e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04043e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10715" sboTerm="SBO:0000627" id="MAR10715" name="Exchange of TyrAlaPhe" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10715" sboTerm="SBO:0000627" id="R_MAR10715" name="Exchange of TyrAlaPhe" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -436370,7 +435239,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10715">
+            <rdf:Description rdf:about="#R_MAR10715">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_tyralaphe_e"/>
@@ -436381,10 +435250,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM04044e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04044e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10716" sboTerm="SBO:0000627" id="MAR10716" name="Exchange of TyrArgGlu" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10716" sboTerm="SBO:0000627" id="R_MAR10716" name="Exchange of TyrArgGlu" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -436392,7 +435261,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10716">
+            <rdf:Description rdf:about="#R_MAR10716">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_tyrargglu_e"/>
@@ -436403,10 +435272,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM04045e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04045e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10717" sboTerm="SBO:0000627" id="MAR10717" name="Exchange of TyrArgSer" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10717" sboTerm="SBO:0000627" id="R_MAR10717" name="Exchange of TyrArgSer" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -436414,7 +435283,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10717">
+            <rdf:Description rdf:about="#R_MAR10717">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_tyrargser_e"/>
@@ -436425,10 +435294,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM04046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04046e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10718" sboTerm="SBO:0000627" id="MAR10718" name="Exchange of TyrAspArg" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10718" sboTerm="SBO:0000627" id="R_MAR10718" name="Exchange of TyrAspArg" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -436436,7 +435305,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10718">
+            <rdf:Description rdf:about="#R_MAR10718">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_tyrasparg_e"/>
@@ -436447,10 +435316,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM04047e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04047e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10719" sboTerm="SBO:0000627" id="MAR10719" name="Exchange of TyrCysGly" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10719" sboTerm="SBO:0000627" id="R_MAR10719" name="Exchange of TyrCysGly" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -436458,7 +435327,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10719">
+            <rdf:Description rdf:about="#R_MAR10719">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_tyrcysgly_e"/>
@@ -436469,10 +435338,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM04048e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04048e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10720" sboTerm="SBO:0000627" id="MAR10720" name="Exchange of TyrCysThr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10720" sboTerm="SBO:0000627" id="R_MAR10720" name="Exchange of TyrCysThr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -436480,7 +435349,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10720">
+            <rdf:Description rdf:about="#R_MAR10720">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_tyrcysthr_e"/>
@@ -436491,10 +435360,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM04049e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04049e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10721" sboTerm="SBO:0000627" id="MAR10721" name="Exchange of TyrGlu" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10721" sboTerm="SBO:0000627" id="R_MAR10721" name="Exchange of TyrGlu" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -436502,7 +435371,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10721">
+            <rdf:Description rdf:about="#R_MAR10721">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_tyrglu_e"/>
@@ -436513,10 +435382,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM04050e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04050e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10722" sboTerm="SBO:0000627" id="MAR10722" name="Exchange of TyrLeuArg" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10722" sboTerm="SBO:0000627" id="R_MAR10722" name="Exchange of TyrLeuArg" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -436524,7 +435393,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10722">
+            <rdf:Description rdf:about="#R_MAR10722">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_tyrleuarg_e"/>
@@ -436535,10 +435404,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM04051e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04051e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10723" sboTerm="SBO:0000627" id="MAR10723" name="Exchange of TyrPhetyr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10723" sboTerm="SBO:0000627" id="R_MAR10723" name="Exchange of TyrPhetyr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -436546,7 +435415,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10723">
+            <rdf:Description rdf:about="#R_MAR10723">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_tyrphetyr_e"/>
@@ -436557,10 +435426,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM04052e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04052e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10724" sboTerm="SBO:0000627" id="MAR10724" name="Exchange of TyrThr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10724" sboTerm="SBO:0000627" id="R_MAR10724" name="Exchange of TyrThr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -436568,7 +435437,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10724">
+            <rdf:Description rdf:about="#R_MAR10724">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_tyrthr_e"/>
@@ -436579,10 +435448,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM04053e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04053e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10725" sboTerm="SBO:0000627" id="MAR10725" name="Exchange of TyrTrpPhe" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10725" sboTerm="SBO:0000627" id="R_MAR10725" name="Exchange of TyrTrpPhe" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -436590,7 +435459,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10725">
+            <rdf:Description rdf:about="#R_MAR10725">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_tyrtrpphe_e"/>
@@ -436601,10 +435470,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM04054e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04054e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10726" sboTerm="SBO:0000627" id="MAR10726" name="Exchange of Tyrtyr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10726" sboTerm="SBO:0000627" id="R_MAR10726" name="Exchange of Tyrtyr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -436612,7 +435481,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10726">
+            <rdf:Description rdf:about="#R_MAR10726">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_tyrtyr_e"/>
@@ -436623,10 +435492,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM04055e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04055e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10727" sboTerm="SBO:0000627" id="MAR10727" name="Exchange of TyrValMet" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10727" sboTerm="SBO:0000627" id="R_MAR10727" name="Exchange of TyrValMet" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -436634,7 +435503,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10727">
+            <rdf:Description rdf:about="#R_MAR10727">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_tyrvalmet_e"/>
@@ -436645,10 +435514,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM04056e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04056e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10728" sboTerm="SBO:0000627" id="MAR10728" name="Exchange of ValArgGly" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10728" sboTerm="SBO:0000627" id="R_MAR10728" name="Exchange of ValArgGly" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -436656,7 +435525,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10728">
+            <rdf:Description rdf:about="#R_MAR10728">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_valarggly_e"/>
@@ -436667,10 +435536,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM04062e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04062e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10729" sboTerm="SBO:0000627" id="MAR10729" name="Exchange of ValHisAsn" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10729" sboTerm="SBO:0000627" id="R_MAR10729" name="Exchange of ValHisAsn" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -436678,7 +435547,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10729">
+            <rdf:Description rdf:about="#R_MAR10729">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_valhisasn_e"/>
@@ -436689,10 +435558,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM04063e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04063e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10730" sboTerm="SBO:0000627" id="MAR10730" name="Exchange of ValLeuPhe" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10730" sboTerm="SBO:0000627" id="R_MAR10730" name="Exchange of ValLeuPhe" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -436700,7 +435569,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10730">
+            <rdf:Description rdf:about="#R_MAR10730">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_valleuphe_e"/>
@@ -436711,10 +435580,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM04064e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04064e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10731" sboTerm="SBO:0000627" id="MAR10731" name="Exchange of ValLystyr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10731" sboTerm="SBO:0000627" id="R_MAR10731" name="Exchange of ValLystyr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -436722,7 +435591,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10731">
+            <rdf:Description rdf:about="#R_MAR10731">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_vallystyr_e"/>
@@ -436733,10 +435602,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM04065e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04065e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10732" sboTerm="SBO:0000627" id="MAR10732" name="Exchange of ValPheArg" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10732" sboTerm="SBO:0000627" id="R_MAR10732" name="Exchange of ValPheArg" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -436744,7 +435613,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10732">
+            <rdf:Description rdf:about="#R_MAR10732">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_valphearg_e"/>
@@ -436755,10 +435624,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM04066e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04066e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10733" sboTerm="SBO:0000627" id="MAR10733" name="Exchange of ValProTrp" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10733" sboTerm="SBO:0000627" id="R_MAR10733" name="Exchange of ValProTrp" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -436766,7 +435635,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10733">
+            <rdf:Description rdf:about="#R_MAR10733">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_valprotrp_e"/>
@@ -436777,10 +435646,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM04067e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04067e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10734" sboTerm="SBO:0000627" id="MAR10734" name="Exchange of ValSerArg" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10734" sboTerm="SBO:0000627" id="R_MAR10734" name="Exchange of ValSerArg" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -436788,7 +435657,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10734">
+            <rdf:Description rdf:about="#R_MAR10734">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_valserarg_e"/>
@@ -436799,10 +435668,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM04068e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04068e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10735" sboTerm="SBO:0000627" id="MAR10735" name="Exchange of ValTrpPhe" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10735" sboTerm="SBO:0000627" id="R_MAR10735" name="Exchange of ValTrpPhe" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -436810,7 +435679,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10735">
+            <rdf:Description rdf:about="#R_MAR10735">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_valtrpphe_e"/>
@@ -436821,10 +435690,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM04069e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04069e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10736" sboTerm="SBO:0000627" id="MAR10736" name="Exchange of ValTrpVal" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10736" sboTerm="SBO:0000627" id="R_MAR10736" name="Exchange of ValTrpVal" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -436832,7 +435701,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10736">
+            <rdf:Description rdf:about="#R_MAR10736">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_valtrpval_e"/>
@@ -436843,10 +435712,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM04070e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04070e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10737" sboTerm="SBO:0000627" id="MAR10737" name="Exchange of ValVal" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10737" sboTerm="SBO:0000627" id="R_MAR10737" name="Exchange of ValVal" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -436854,7 +435723,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10737">
+            <rdf:Description rdf:about="#R_MAR10737">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_valval_e"/>
@@ -436865,10 +435734,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM04071e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04071e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10738" sboTerm="SBO:0000627" id="MAR10738" name="Exchange of TrpGlyAsp" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10738" sboTerm="SBO:0000627" id="R_MAR10738" name="Exchange of TrpGlyAsp" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -436876,7 +435745,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10738">
+            <rdf:Description rdf:about="#R_MAR10738">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_trpglyasp_e"/>
@@ -436887,10 +435756,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM04016e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04016e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10739" sboTerm="SBO:0000185" id="MAR10739" name="Transport of AlaArgCys, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10739" sboTerm="SBO:0000185" id="R_MAR10739" name="Transport of AlaArgCys, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -436898,7 +435767,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10739">
+            <rdf:Description rdf:about="#R_MAR10739">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ALAARGCYSt"/>
@@ -436909,12 +435778,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03411e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03411e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03411c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03411c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -436923,7 +435792,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10740" sboTerm="SBO:0000185" id="MAR10740" name="Transport of AlaArgGly, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10740" sboTerm="SBO:0000185" id="R_MAR10740" name="Transport of AlaArgGly, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -436931,7 +435800,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10740">
+            <rdf:Description rdf:about="#R_MAR10740">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ALAARGGLYt"/>
@@ -436942,12 +435811,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03412e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03412e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03412c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03412c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -436956,7 +435825,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10741" sboTerm="SBO:0000185" id="MAR10741" name="Transport of AlaAsnLeu, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10741" sboTerm="SBO:0000185" id="R_MAR10741" name="Transport of AlaAsnLeu, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -436964,7 +435833,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10741">
+            <rdf:Description rdf:about="#R_MAR10741">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ALAASNLEUt"/>
@@ -436975,12 +435844,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03413e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03413e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03413c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03413c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -436989,7 +435858,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10742" sboTerm="SBO:0000185" id="MAR10742" name="Transport of AlaGlyLys, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10742" sboTerm="SBO:0000185" id="R_MAR10742" name="Transport of AlaGlyLys, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -436997,7 +435866,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10742">
+            <rdf:Description rdf:about="#R_MAR10742">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ALAGLYLYSt"/>
@@ -437008,12 +435877,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03414e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03414e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03414c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03414c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -437022,7 +435891,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10743" sboTerm="SBO:0000185" id="MAR10743" name="Transport of AlaHisAla, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10743" sboTerm="SBO:0000185" id="R_MAR10743" name="Transport of AlaHisAla, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -437030,7 +435899,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10743">
+            <rdf:Description rdf:about="#R_MAR10743">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ALAHISALAt"/>
@@ -437041,12 +435910,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03415e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03415e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03415c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03415c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -437055,7 +435924,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10744" sboTerm="SBO:0000185" id="MAR10744" name="Transport of AlaLysThr, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10744" sboTerm="SBO:0000185" id="R_MAR10744" name="Transport of AlaLysThr, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -437063,7 +435932,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10744">
+            <rdf:Description rdf:about="#R_MAR10744">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ALALYSTHRt"/>
@@ -437074,12 +435943,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03416e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03416e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03416c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03416c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -437088,7 +435957,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10745" sboTerm="SBO:0000185" id="MAR10745" name="Transport of ArgAlaAla, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10745" sboTerm="SBO:0000185" id="R_MAR10745" name="Transport of ArgAlaAla, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -437096,7 +435965,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10745">
+            <rdf:Description rdf:about="#R_MAR10745">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ARGALAALAt"/>
@@ -437107,12 +435976,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03435e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03435e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03435c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03435c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -437121,7 +435990,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10746" sboTerm="SBO:0000185" id="MAR10746" name="Transport of ArgAlaPhe, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10746" sboTerm="SBO:0000185" id="R_MAR10746" name="Transport of ArgAlaPhe, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -437129,7 +435998,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10746">
+            <rdf:Description rdf:about="#R_MAR10746">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ARGALAPHEt"/>
@@ -437140,12 +436009,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03436e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03436e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03436c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03436c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -437154,7 +436023,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10747" sboTerm="SBO:0000185" id="MAR10747" name="Transport of ArgAlaThr, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10747" sboTerm="SBO:0000185" id="R_MAR10747" name="Transport of ArgAlaThr, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -437162,7 +436031,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10747">
+            <rdf:Description rdf:about="#R_MAR10747">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ARGALATHRt"/>
@@ -437173,12 +436042,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03437e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03437e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03437c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03437c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -437187,7 +436056,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10748" sboTerm="SBO:0000185" id="MAR10748" name="Transport of ArgArg, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10748" sboTerm="SBO:0000185" id="R_MAR10748" name="Transport of ArgArg, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -437195,7 +436064,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10748">
+            <rdf:Description rdf:about="#R_MAR10748">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ARGARGt"/>
@@ -437206,12 +436075,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03438e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03438e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03438c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03438c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -437220,7 +436089,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10749" sboTerm="SBO:0000185" id="MAR10749" name="Transport of ArgArgLys, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10749" sboTerm="SBO:0000185" id="R_MAR10749" name="Transport of ArgArgLys, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -437228,7 +436097,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10749">
+            <rdf:Description rdf:about="#R_MAR10749">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ARGARGLYSt"/>
@@ -437239,12 +436108,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03439e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03439e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03439c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03439c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -437253,7 +436122,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10750" sboTerm="SBO:0000185" id="MAR10750" name="Transport of ArgArgMet, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10750" sboTerm="SBO:0000185" id="R_MAR10750" name="Transport of ArgArgMet, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -437261,7 +436130,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10750">
+            <rdf:Description rdf:about="#R_MAR10750">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ARGARGMETt"/>
@@ -437272,12 +436141,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03440e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03440e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03440c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03440c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -437286,7 +436155,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10751" sboTerm="SBO:0000185" id="MAR10751" name="Transport of ArgCysGly, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10751" sboTerm="SBO:0000185" id="R_MAR10751" name="Transport of ArgCysGly, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -437294,7 +436163,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10751">
+            <rdf:Description rdf:about="#R_MAR10751">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ARGCYSGLYt"/>
@@ -437305,12 +436174,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03441e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03441e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03441c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03441c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -437319,7 +436188,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10752" sboTerm="SBO:0000185" id="MAR10752" name="Transport of ArgCysSer, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10752" sboTerm="SBO:0000185" id="R_MAR10752" name="Transport of ArgCysSer, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -437327,7 +436196,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10752">
+            <rdf:Description rdf:about="#R_MAR10752">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ARGCYSSERt"/>
@@ -437338,12 +436207,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03442e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03442e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03442c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03442c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -437352,7 +436221,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10753" sboTerm="SBO:0000185" id="MAR10753" name="Transport of ArgGluGlu, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10753" sboTerm="SBO:0000185" id="R_MAR10753" name="Transport of ArgGluGlu, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -437360,7 +436229,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10753">
+            <rdf:Description rdf:about="#R_MAR10753">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ARGGLUGLUt"/>
@@ -437371,12 +436240,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03443e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03443e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03443c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03443c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -437385,7 +436254,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10754" sboTerm="SBO:0000185" id="MAR10754" name="Transport of ArgGluPro, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10754" sboTerm="SBO:0000185" id="R_MAR10754" name="Transport of ArgGluPro, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -437393,7 +436262,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10754">
+            <rdf:Description rdf:about="#R_MAR10754">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ARGGLUPROt"/>
@@ -437404,12 +436273,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03444e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03444e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03444c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03444c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -437418,7 +436287,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10755" sboTerm="SBO:0000185" id="MAR10755" name="Transport of ArgGlyGly, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10755" sboTerm="SBO:0000185" id="R_MAR10755" name="Transport of ArgGlyGly, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -437426,7 +436295,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10755">
+            <rdf:Description rdf:about="#R_MAR10755">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ARGGLYGLYt"/>
@@ -437437,12 +436306,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03445e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03445e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03445c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03445c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -437451,7 +436320,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10756" sboTerm="SBO:0000185" id="MAR10756" name="Transport of ArgHisThr, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10756" sboTerm="SBO:0000185" id="R_MAR10756" name="Transport of ArgHisThr, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -437459,7 +436328,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10756">
+            <rdf:Description rdf:about="#R_MAR10756">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ARGHISTHRt"/>
@@ -437470,12 +436339,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03446e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03446e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03446c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03446c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -437484,7 +436353,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10757" sboTerm="SBO:0000185" id="MAR10757" name="Transport of ArgLeuPhe, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10757" sboTerm="SBO:0000185" id="R_MAR10757" name="Transport of ArgLeuPhe, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -437492,7 +436361,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10757">
+            <rdf:Description rdf:about="#R_MAR10757">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ARGLEUPHEt"/>
@@ -437503,12 +436372,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03447e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03447e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03447c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03447c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -437517,7 +436386,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10758" sboTerm="SBO:0000185" id="MAR10758" name="Transport of ArgLysAsp, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10758" sboTerm="SBO:0000185" id="R_MAR10758" name="Transport of ArgLysAsp, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -437525,7 +436394,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10758">
+            <rdf:Description rdf:about="#R_MAR10758">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ARGLYSASPt"/>
@@ -437536,12 +436405,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03448e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03448e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03448c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03448c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -437550,7 +436419,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10759" sboTerm="SBO:0000185" id="MAR10759" name="Transport of ArgPheArg, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10759" sboTerm="SBO:0000185" id="R_MAR10759" name="Transport of ArgPheArg, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -437558,7 +436427,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10759">
+            <rdf:Description rdf:about="#R_MAR10759">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ARGPHEARGt"/>
@@ -437569,12 +436438,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03449e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03449e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03449c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03449c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -437583,7 +436452,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10760" sboTerm="SBO:0000185" id="MAR10760" name="Transport of ArgProMet, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10760" sboTerm="SBO:0000185" id="R_MAR10760" name="Transport of ArgProMet, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -437591,7 +436460,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10760">
+            <rdf:Description rdf:about="#R_MAR10760">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ARGPROMETt"/>
@@ -437602,12 +436471,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03450e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03450e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03450c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03450c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -437616,7 +436485,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10761" sboTerm="SBO:0000185" id="MAR10761" name="Transport of ArgProThr, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10761" sboTerm="SBO:0000185" id="R_MAR10761" name="Transport of ArgProThr, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -437624,7 +436493,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10761">
+            <rdf:Description rdf:about="#R_MAR10761">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ARGPROTHRt"/>
@@ -437635,12 +436504,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03451e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03451e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03451c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03451c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -437649,7 +436518,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10762" sboTerm="SBO:0000185" id="MAR10762" name="Transport of ArgSerSer, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10762" sboTerm="SBO:0000185" id="R_MAR10762" name="Transport of ArgSerSer, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -437657,7 +436526,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10762">
+            <rdf:Description rdf:about="#R_MAR10762">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ARGSERSERt"/>
@@ -437668,12 +436537,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03452e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03452e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03452c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03452c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -437682,7 +436551,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10763" sboTerm="SBO:0000185" id="MAR10763" name="Transport of ArgtyrVal, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10763" sboTerm="SBO:0000185" id="R_MAR10763" name="Transport of ArgtyrVal, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -437690,7 +436559,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10763">
+            <rdf:Description rdf:about="#R_MAR10763">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ARGTYRVALt"/>
@@ -437701,12 +436570,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03453e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03453e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03453c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03453c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -437715,7 +436584,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10764" sboTerm="SBO:0000185" id="MAR10764" name="Transport of ArgValCys, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10764" sboTerm="SBO:0000185" id="R_MAR10764" name="Transport of ArgValCys, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -437723,7 +436592,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10764">
+            <rdf:Description rdf:about="#R_MAR10764">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ARGVALCYSt"/>
@@ -437734,12 +436603,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03454e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03454e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03454c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03454c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -437748,7 +436617,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10765" sboTerm="SBO:0000185" id="MAR10765" name="Transport of ArgValTrp, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10765" sboTerm="SBO:0000185" id="R_MAR10765" name="Transport of ArgValTrp, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -437756,7 +436625,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10765">
+            <rdf:Description rdf:about="#R_MAR10765">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ARGVALTRPt"/>
@@ -437767,12 +436636,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03455e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03455e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03455c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03455c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -437781,7 +436650,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10766" sboTerm="SBO:0000185" id="MAR10766" name="Transport of AsnAsnArg, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10766" sboTerm="SBO:0000185" id="R_MAR10766" name="Transport of AsnAsnArg, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -437789,7 +436658,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10766">
+            <rdf:Description rdf:about="#R_MAR10766">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ASNASNARGt"/>
@@ -437800,12 +436669,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03456e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03456e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03456c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03456c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -437814,7 +436683,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10767" sboTerm="SBO:0000185" id="MAR10767" name="Transport of AsnCysCys, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10767" sboTerm="SBO:0000185" id="R_MAR10767" name="Transport of AsnCysCys, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -437822,7 +436691,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10767">
+            <rdf:Description rdf:about="#R_MAR10767">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ASNCYSCYSt"/>
@@ -437833,12 +436702,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03457e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03457e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03457c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03457c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -437847,7 +436716,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10768" sboTerm="SBO:0000185" id="MAR10768" name="Transport of AsnMetPro, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10768" sboTerm="SBO:0000185" id="R_MAR10768" name="Transport of AsnMetPro, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -437855,7 +436724,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10768">
+            <rdf:Description rdf:about="#R_MAR10768">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ASNMETPROt"/>
@@ -437866,12 +436735,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03458e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03458e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03458c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03458c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -437880,7 +436749,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10769" sboTerm="SBO:0000185" id="MAR10769" name="Transport of AsnPheAsp, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10769" sboTerm="SBO:0000185" id="R_MAR10769" name="Transport of AsnPheAsp, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -437888,7 +436757,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10769">
+            <rdf:Description rdf:about="#R_MAR10769">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ASNPHEASPt"/>
@@ -437899,12 +436768,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03459e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03459e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03459c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03459c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -437913,7 +436782,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10770" sboTerm="SBO:0000185" id="MAR10770" name="Transport of AsnPheCys, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10770" sboTerm="SBO:0000185" id="R_MAR10770" name="Transport of AsnPheCys, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -437921,7 +436790,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10770">
+            <rdf:Description rdf:about="#R_MAR10770">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ASNPHECYSt"/>
@@ -437932,12 +436801,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03460e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03460e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03460c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03460c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -437946,7 +436815,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10771" sboTerm="SBO:0000185" id="MAR10771" name="Transport of AsntyrGly, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10771" sboTerm="SBO:0000185" id="R_MAR10771" name="Transport of AsntyrGly, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -437954,7 +436823,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10771">
+            <rdf:Description rdf:about="#R_MAR10771">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ASNTYRGLYt"/>
@@ -437965,12 +436834,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03461e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03461e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03461c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03461c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -437979,7 +436848,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10772" sboTerm="SBO:0000185" id="MAR10772" name="Transport of AsntyrPhe, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10772" sboTerm="SBO:0000185" id="R_MAR10772" name="Transport of AsntyrPhe, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -437987,7 +436856,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10772">
+            <rdf:Description rdf:about="#R_MAR10772">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ASNTYRPHEt"/>
@@ -437998,12 +436867,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03462e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03462e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03462c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03462c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -438012,7 +436881,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10773" sboTerm="SBO:0000185" id="MAR10773" name="Transport of AsntyrThr, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10773" sboTerm="SBO:0000185" id="R_MAR10773" name="Transport of AsntyrThr, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -438020,7 +436889,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10773">
+            <rdf:Description rdf:about="#R_MAR10773">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ASNTYRTHRt"/>
@@ -438031,12 +436900,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03463e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03463e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03463c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03463c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -438045,7 +436914,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10774" sboTerm="SBO:0000185" id="MAR10774" name="Transport of AspAlaArg, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10774" sboTerm="SBO:0000185" id="R_MAR10774" name="Transport of AspAlaArg, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -438053,7 +436922,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10774">
+            <rdf:Description rdf:about="#R_MAR10774">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ASPALAARGt"/>
@@ -438064,12 +436933,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03464e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03464e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03464c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03464c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -438078,7 +436947,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10775" sboTerm="SBO:0000185" id="MAR10775" name="Transport of AspAsnGlu, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10775" sboTerm="SBO:0000185" id="R_MAR10775" name="Transport of AspAsnGlu, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -438086,7 +436955,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10775">
+            <rdf:Description rdf:about="#R_MAR10775">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ASPASNGLUt"/>
@@ -438097,12 +436966,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03465e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03465e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03465c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03465c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -438111,7 +436980,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10776" sboTerm="SBO:0000185" id="MAR10776" name="Transport of AspGlu, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10776" sboTerm="SBO:0000185" id="R_MAR10776" name="Transport of AspGlu, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -438119,7 +436988,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10776">
+            <rdf:Description rdf:about="#R_MAR10776">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ASPGLUt"/>
@@ -438130,12 +436999,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03466e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03466e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03466c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03466c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -438144,7 +437013,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10777" sboTerm="SBO:0000185" id="MAR10777" name="Transport of AspGluPro, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10777" sboTerm="SBO:0000185" id="R_MAR10777" name="Transport of AspGluPro, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -438152,7 +437021,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10777">
+            <rdf:Description rdf:about="#R_MAR10777">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ASPGLUPROt"/>
@@ -438163,12 +437032,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03467e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03467e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03467c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03467c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -438177,7 +437046,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10778" sboTerm="SBO:0000185" id="MAR10778" name="Transport of AspGluTrp, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10778" sboTerm="SBO:0000185" id="R_MAR10778" name="Transport of AspGluTrp, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -438185,7 +437054,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10778">
+            <rdf:Description rdf:about="#R_MAR10778">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ASPGLUTRPt"/>
@@ -438196,12 +437065,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03468e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03468e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03468c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03468c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -438210,7 +437079,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10779" sboTerm="SBO:0000185" id="MAR10779" name="Transport of AspHisCys, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10779" sboTerm="SBO:0000185" id="R_MAR10779" name="Transport of AspHisCys, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -438218,7 +437087,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10779">
+            <rdf:Description rdf:about="#R_MAR10779">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ASPHISCYSt"/>
@@ -438229,12 +437098,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03469e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03469e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03469c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03469c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -438243,7 +437112,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10780" sboTerm="SBO:0000185" id="MAR10780" name="Transport of AspHisPro, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10780" sboTerm="SBO:0000185" id="R_MAR10780" name="Transport of AspHisPro, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -438251,7 +437120,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10780">
+            <rdf:Description rdf:about="#R_MAR10780">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ASPHISPROt"/>
@@ -438262,12 +437131,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03470e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03470e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03470c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03470c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -438276,7 +437145,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10781" sboTerm="SBO:0000185" id="MAR10781" name="Transport of AspLysGlu, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10781" sboTerm="SBO:0000185" id="R_MAR10781" name="Transport of AspLysGlu, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -438284,7 +437153,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10781">
+            <rdf:Description rdf:about="#R_MAR10781">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ASPLYSGLUt"/>
@@ -438295,12 +437164,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03471e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03471e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03471c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03471c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -438309,7 +437178,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10782" sboTerm="SBO:0000185" id="MAR10782" name="Transport of AspLysHis, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10782" sboTerm="SBO:0000185" id="R_MAR10782" name="Transport of AspLysHis, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -438317,7 +437186,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10782">
+            <rdf:Description rdf:about="#R_MAR10782">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ASPLYSHISt"/>
@@ -438328,12 +437197,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03472e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03472e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03472c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03472c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -438342,7 +437211,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10783" sboTerm="SBO:0000185" id="MAR10783" name="Transport of AspMetAsp, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10783" sboTerm="SBO:0000185" id="R_MAR10783" name="Transport of AspMetAsp, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -438350,7 +437219,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10783">
+            <rdf:Description rdf:about="#R_MAR10783">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ASPMETASPt"/>
@@ -438361,12 +437230,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03473e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03473e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03473c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03473c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -438375,7 +437244,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10784" sboTerm="SBO:0000185" id="MAR10784" name="Transport of AspProLys, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10784" sboTerm="SBO:0000185" id="R_MAR10784" name="Transport of AspProLys, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -438383,7 +437252,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10784">
+            <rdf:Description rdf:about="#R_MAR10784">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ASPPROLYSt"/>
@@ -438394,12 +437263,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03474e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03474e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03474c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03474c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -438408,7 +437277,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10785" sboTerm="SBO:0000185" id="MAR10785" name="Transport of AspValAsn, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10785" sboTerm="SBO:0000185" id="R_MAR10785" name="Transport of AspValAsn, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -438416,7 +437285,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10785">
+            <rdf:Description rdf:about="#R_MAR10785">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ASPVALASNt"/>
@@ -438427,12 +437296,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03475e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03475e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03475c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03475c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -438441,7 +437310,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10786" sboTerm="SBO:0000185" id="MAR10786" name="Transport of CysAsnMet, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10786" sboTerm="SBO:0000185" id="R_MAR10786" name="Transport of CysAsnMet, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -438449,7 +437318,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10786">
+            <rdf:Description rdf:about="#R_MAR10786">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CYSASNMETt"/>
@@ -438460,12 +437329,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03527e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03527e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03527c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03527c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -438474,7 +437343,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10787" sboTerm="SBO:0000185" id="MAR10787" name="Transport of CysAspPhe, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10787" sboTerm="SBO:0000185" id="R_MAR10787" name="Transport of CysAspPhe, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -438482,7 +437351,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10787">
+            <rdf:Description rdf:about="#R_MAR10787">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CYSASPPHEt"/>
@@ -438493,12 +437362,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03528e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03528e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03528c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03528c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -438507,7 +437376,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10788" sboTerm="SBO:0000185" id="MAR10788" name="Transport of CysCys, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10788" sboTerm="SBO:0000185" id="R_MAR10788" name="Transport of CysCys, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -438515,7 +437384,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10788">
+            <rdf:Description rdf:about="#R_MAR10788">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CYSCYSt"/>
@@ -438526,12 +437395,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03529e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03529e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03529c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03529c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -438540,7 +437409,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10789" sboTerm="SBO:0000185" id="MAR10789" name="Transport of CysGlnMet, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10789" sboTerm="SBO:0000185" id="R_MAR10789" name="Transport of CysGlnMet, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -438548,7 +437417,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10789">
+            <rdf:Description rdf:about="#R_MAR10789">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CYSGLNMETt"/>
@@ -438559,12 +437428,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03530e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03530e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03530c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03530c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -438573,7 +437442,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10790" sboTerm="SBO:0000185" id="MAR10790" name="Transport of CysGluHis, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10790" sboTerm="SBO:0000185" id="R_MAR10790" name="Transport of CysGluHis, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -438581,7 +437450,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10790">
+            <rdf:Description rdf:about="#R_MAR10790">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CYSGLUHISt"/>
@@ -438592,12 +437461,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03531e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03531e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03531c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03531c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -438606,7 +437475,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10791" sboTerm="SBO:0000185" id="MAR10791" name="Transport of CysGluTrp, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10791" sboTerm="SBO:0000185" id="R_MAR10791" name="Transport of CysGluTrp, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -438614,7 +437483,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10791">
+            <rdf:Description rdf:about="#R_MAR10791">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CYSGLUTRPt"/>
@@ -438625,12 +437494,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03532e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03532e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03532c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03532c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -438639,7 +437508,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10792" sboTerm="SBO:0000185" id="MAR10792" name="Transport of CysLeuThr, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10792" sboTerm="SBO:0000185" id="R_MAR10792" name="Transport of CysLeuThr, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -438647,7 +437516,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10792">
+            <rdf:Description rdf:about="#R_MAR10792">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CYSLEUTHRt"/>
@@ -438658,12 +437527,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03533e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03533e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03533c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03533c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -438672,7 +437541,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10793" sboTerm="SBO:0000185" id="MAR10793" name="Transport of CysSerMet, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10793" sboTerm="SBO:0000185" id="R_MAR10793" name="Transport of CysSerMet, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -438680,7 +437549,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10793">
+            <rdf:Description rdf:about="#R_MAR10793">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CYSSERMETt"/>
@@ -438691,12 +437560,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03534e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03534e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03534c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03534c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -438705,7 +437574,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10794" sboTerm="SBO:0000185" id="MAR10794" name="Transport of CystyrAsn, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10794" sboTerm="SBO:0000185" id="R_MAR10794" name="Transport of CystyrAsn, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -438713,7 +437582,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10794">
+            <rdf:Description rdf:about="#R_MAR10794">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CYSTYRASNt"/>
@@ -438724,12 +437593,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03535e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03535e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03535c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03535c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -438738,7 +437607,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10795" sboTerm="SBO:0000185" id="MAR10795" name="Transport of GlnAsnGln, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10795" sboTerm="SBO:0000185" id="R_MAR10795" name="Transport of GlnAsnGln, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -438746,7 +437615,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10795">
+            <rdf:Description rdf:about="#R_MAR10795">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GLNASNGLNt"/>
@@ -438757,12 +437626,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03596e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03596e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03596c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03596c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -438771,7 +437640,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10796" sboTerm="SBO:0000185" id="MAR10796" name="Transport of GlnHisHis, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10796" sboTerm="SBO:0000185" id="R_MAR10796" name="Transport of GlnHisHis, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -438779,7 +437648,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10796">
+            <rdf:Description rdf:about="#R_MAR10796">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GLNHISHISt"/>
@@ -438790,12 +437659,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03597e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03597e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03597c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -438804,7 +437673,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10797" sboTerm="SBO:0000185" id="MAR10797" name="Transport of GlnHisLys, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10797" sboTerm="SBO:0000185" id="R_MAR10797" name="Transport of GlnHisLys, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -438812,7 +437681,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10797">
+            <rdf:Description rdf:about="#R_MAR10797">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GLNHISLYSt"/>
@@ -438823,12 +437692,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03598e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03598e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03598c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03598c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -438837,7 +437706,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10798" sboTerm="SBO:0000185" id="MAR10798" name="Transport of GlnLysLys, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10798" sboTerm="SBO:0000185" id="R_MAR10798" name="Transport of GlnLysLys, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -438845,7 +437714,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10798">
+            <rdf:Description rdf:about="#R_MAR10798">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GLNLYSLYSt"/>
@@ -438856,12 +437725,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03599e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03599e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03599c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03599c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -438870,7 +437739,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10799" sboTerm="SBO:0000185" id="MAR10799" name="Transport of GlnLysTrp, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10799" sboTerm="SBO:0000185" id="R_MAR10799" name="Transport of GlnLysTrp, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -438878,7 +437747,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10799">
+            <rdf:Description rdf:about="#R_MAR10799">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GLNLYSTRPt"/>
@@ -438889,12 +437758,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03600e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03600e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03600c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03600c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -438903,7 +437772,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10800" sboTerm="SBO:0000185" id="MAR10800" name="Transport of GlnProGlu, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10800" sboTerm="SBO:0000185" id="R_MAR10800" name="Transport of GlnProGlu, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -438911,7 +437780,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10800">
+            <rdf:Description rdf:about="#R_MAR10800">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GLNPROGLUt"/>
@@ -438922,12 +437791,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03601e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03601e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03601c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03601c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -438936,7 +437805,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10801" sboTerm="SBO:0000185" id="MAR10801" name="Transport of GlnTrpGlu, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10801" sboTerm="SBO:0000185" id="R_MAR10801" name="Transport of GlnTrpGlu, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -438944,7 +437813,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10801">
+            <rdf:Description rdf:about="#R_MAR10801">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GLNTRPGLUt"/>
@@ -438955,12 +437824,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03602e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03602e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03602c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03602c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -438969,7 +437838,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10802" sboTerm="SBO:0000185" id="MAR10802" name="Transport of GlntyrLeu, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10802" sboTerm="SBO:0000185" id="R_MAR10802" name="Transport of GlntyrLeu, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -438977,7 +437846,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10802">
+            <rdf:Description rdf:about="#R_MAR10802">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GLNTYRLEUt"/>
@@ -438988,12 +437857,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03603e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03603e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03603c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03603c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -439002,7 +437871,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10803" sboTerm="SBO:0000185" id="MAR10803" name="Transport of GluArgLeu, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10803" sboTerm="SBO:0000185" id="R_MAR10803" name="Transport of GluArgLeu, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -439010,7 +437879,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10803">
+            <rdf:Description rdf:about="#R_MAR10803">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GLUARGLEUt"/>
@@ -439021,12 +437890,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03606e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03606e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03606c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03606c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -439035,7 +437904,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10804" sboTerm="SBO:0000185" id="MAR10804" name="Transport of GluAsnLeu, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10804" sboTerm="SBO:0000185" id="R_MAR10804" name="Transport of GluAsnLeu, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -439043,7 +437912,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10804">
+            <rdf:Description rdf:about="#R_MAR10804">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GLUASNLEUt"/>
@@ -439054,12 +437923,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03607e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03607e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03607c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03607c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -439068,7 +437937,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10805" sboTerm="SBO:0000185" id="MAR10805" name="Transport of GluGlu, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10805" sboTerm="SBO:0000185" id="R_MAR10805" name="Transport of GluGlu, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -439076,7 +437945,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10805">
+            <rdf:Description rdf:about="#R_MAR10805">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GLUGLUt"/>
@@ -439087,12 +437956,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03608e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03608e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03608c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03608c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -439101,7 +437970,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10806" sboTerm="SBO:0000185" id="MAR10806" name="Transport of GluIleLys, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10806" sboTerm="SBO:0000185" id="R_MAR10806" name="Transport of GluIleLys, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -439109,7 +437978,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10806">
+            <rdf:Description rdf:about="#R_MAR10806">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GLUILELYSt"/>
@@ -439120,12 +437989,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03609e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03609e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03609c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03609c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -439134,7 +438003,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10807" sboTerm="SBO:0000185" id="MAR10807" name="Transport of GluLeu, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10807" sboTerm="SBO:0000185" id="R_MAR10807" name="Transport of GluLeu, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -439142,7 +438011,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10807">
+            <rdf:Description rdf:about="#R_MAR10807">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GLULEUt"/>
@@ -439153,12 +438022,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03610e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03610e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03610c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03610c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -439167,7 +438036,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10808" sboTerm="SBO:0000185" id="MAR10808" name="Transport of GluMet, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10808" sboTerm="SBO:0000185" id="R_MAR10808" name="Transport of GluMet, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -439175,7 +438044,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10808">
+            <rdf:Description rdf:about="#R_MAR10808">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GLUMETt"/>
@@ -439186,12 +438055,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03611e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03611e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03611c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03611c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -439200,7 +438069,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10809" sboTerm="SBO:0000185" id="MAR10809" name="Transport of GluMetHis, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10809" sboTerm="SBO:0000185" id="R_MAR10809" name="Transport of GluMetHis, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -439208,7 +438077,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10809">
+            <rdf:Description rdf:about="#R_MAR10809">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GLUMETHISt"/>
@@ -439219,12 +438088,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03612e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03612e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03612c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03612c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -439233,7 +438102,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10810" sboTerm="SBO:0000185" id="MAR10810" name="Transport of GluThr, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10810" sboTerm="SBO:0000185" id="R_MAR10810" name="Transport of GluThr, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -439241,7 +438110,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10810">
+            <rdf:Description rdf:about="#R_MAR10810">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GLUTHRt"/>
@@ -439252,12 +438121,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03616e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03616e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03616c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03616c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -439266,7 +438135,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10811" sboTerm="SBO:0000185" id="MAR10811" name="Transport of GluThrLys, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10811" sboTerm="SBO:0000185" id="R_MAR10811" name="Transport of GluThrLys, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -439274,7 +438143,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10811">
+            <rdf:Description rdf:about="#R_MAR10811">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GLUTHRLYSt"/>
@@ -439285,12 +438154,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03617e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03617e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03617c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03617c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -439299,7 +438168,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10812" sboTerm="SBO:0000185" id="MAR10812" name="Transport of GluTrpAla, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10812" sboTerm="SBO:0000185" id="R_MAR10812" name="Transport of GluTrpAla, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -439307,7 +438176,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10812">
+            <rdf:Description rdf:about="#R_MAR10812">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GLUTRPALAt"/>
@@ -439318,12 +438187,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03618e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03618e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03618c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03618c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -439332,7 +438201,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10813" sboTerm="SBO:0000185" id="MAR10813" name="Transport of GlyHisAsn, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10813" sboTerm="SBO:0000185" id="R_MAR10813" name="Transport of GlyHisAsn, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -439340,7 +438209,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10813">
+            <rdf:Description rdf:about="#R_MAR10813">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GLYHISASNt"/>
@@ -439351,12 +438220,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03624e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03624e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03624c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03624c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -439365,7 +438234,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10814" sboTerm="SBO:0000185" id="MAR10814" name="Transport of GlyHisLys, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10814" sboTerm="SBO:0000185" id="R_MAR10814" name="Transport of GlyHisLys, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -439373,7 +438242,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10814">
+            <rdf:Description rdf:about="#R_MAR10814">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GLYHISLYSt"/>
@@ -439384,12 +438253,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03625e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03625e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03625c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03625c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -439398,7 +438267,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10815" sboTerm="SBO:0000185" id="MAR10815" name="Transport of GlyLysCys, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10815" sboTerm="SBO:0000185" id="R_MAR10815" name="Transport of GlyLysCys, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -439406,7 +438275,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10815">
+            <rdf:Description rdf:about="#R_MAR10815">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GLYLYSCYSt"/>
@@ -439417,12 +438286,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03627e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03627e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03627c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03627c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -439431,7 +438300,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10816" sboTerm="SBO:0000185" id="MAR10816" name="Transport of GlyLysPhe, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10816" sboTerm="SBO:0000185" id="R_MAR10816" name="Transport of GlyLysPhe, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -439439,7 +438308,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10816">
+            <rdf:Description rdf:about="#R_MAR10816">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GLYLYSPHEt"/>
@@ -439450,12 +438319,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03628e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03628e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03628c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03628c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -439464,7 +438333,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10817" sboTerm="SBO:0000185" id="MAR10817" name="Transport of GlytyrLys, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10817" sboTerm="SBO:0000185" id="R_MAR10817" name="Transport of GlytyrLys, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -439472,7 +438341,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10817">
+            <rdf:Description rdf:about="#R_MAR10817">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GLYTYRLYSt"/>
@@ -439483,12 +438352,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03632e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03632e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03632c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03632c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -439497,7 +438366,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10818" sboTerm="SBO:0000185" id="MAR10818" name="Transport of GlyValHis, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10818" sboTerm="SBO:0000185" id="R_MAR10818" name="Transport of GlyValHis, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -439505,7 +438374,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10818">
+            <rdf:Description rdf:about="#R_MAR10818">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GLYVALHISt"/>
@@ -439516,12 +438385,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03633e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03633e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03633c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03633c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -439530,7 +438399,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10819" sboTerm="SBO:0000185" id="MAR10819" name="Transport of HisArgCys, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10819" sboTerm="SBO:0000185" id="R_MAR10819" name="Transport of HisArgCys, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -439538,7 +438407,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10819">
+            <rdf:Description rdf:about="#R_MAR10819">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/HISARGCYSt"/>
@@ -439549,12 +438418,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03662e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03662e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03662c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03662c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -439563,7 +438432,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10820" sboTerm="SBO:0000185" id="MAR10820" name="Transport of HisArgSer, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10820" sboTerm="SBO:0000185" id="R_MAR10820" name="Transport of HisArgSer, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -439571,7 +438440,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10820">
+            <rdf:Description rdf:about="#R_MAR10820">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/HISARGSERt"/>
@@ -439582,12 +438451,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03663e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03663e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03663c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03663c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -439596,7 +438465,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10821" sboTerm="SBO:0000185" id="MAR10821" name="Transport of HisAsp, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10821" sboTerm="SBO:0000185" id="R_MAR10821" name="Transport of HisAsp, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -439604,7 +438473,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10821">
+            <rdf:Description rdf:about="#R_MAR10821">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/HISASPt"/>
@@ -439615,12 +438484,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03664e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03664e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03664c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03664c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -439629,7 +438498,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10822" sboTerm="SBO:0000185" id="MAR10822" name="Transport of HisCysCys, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10822" sboTerm="SBO:0000185" id="R_MAR10822" name="Transport of HisCysCys, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -439637,7 +438506,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10822">
+            <rdf:Description rdf:about="#R_MAR10822">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/HISCYSCYSt"/>
@@ -439648,12 +438517,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03665e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03665e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03665c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03665c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -439662,7 +438531,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10823" sboTerm="SBO:0000185" id="MAR10823" name="Transport of HisGlnAla, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10823" sboTerm="SBO:0000185" id="R_MAR10823" name="Transport of HisGlnAla, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -439670,7 +438539,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10823">
+            <rdf:Description rdf:about="#R_MAR10823">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/HISGLNALAt"/>
@@ -439681,12 +438550,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03666e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03666e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03666c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03666c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -439695,7 +438564,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10824" sboTerm="SBO:0000185" id="MAR10824" name="Transport of HisGlu, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10824" sboTerm="SBO:0000185" id="R_MAR10824" name="Transport of HisGlu, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -439703,7 +438572,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10824">
+            <rdf:Description rdf:about="#R_MAR10824">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/HISGLUt"/>
@@ -439714,12 +438583,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03667e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03667e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03667c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03667c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -439728,7 +438597,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10825" sboTerm="SBO:0000185" id="MAR10825" name="Transport of HisGluGln, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10825" sboTerm="SBO:0000185" id="R_MAR10825" name="Transport of HisGluGln, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -439736,7 +438605,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10825">
+            <rdf:Description rdf:about="#R_MAR10825">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/HISGLUGLNt"/>
@@ -439747,12 +438616,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03668e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03668e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03668c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03668c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -439761,7 +438630,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10826" sboTerm="SBO:0000185" id="MAR10826" name="Transport of HisGlyLys, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10826" sboTerm="SBO:0000185" id="R_MAR10826" name="Transport of HisGlyLys, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -439769,7 +438638,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10826">
+            <rdf:Description rdf:about="#R_MAR10826">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/HISGLYLYSt"/>
@@ -439780,12 +438649,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03669e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03669e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03669c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03669c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -439794,7 +438663,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10827" sboTerm="SBO:0000185" id="MAR10827" name="Transport of HisHisLys, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10827" sboTerm="SBO:0000185" id="R_MAR10827" name="Transport of HisHisLys, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -439802,7 +438671,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10827">
+            <rdf:Description rdf:about="#R_MAR10827">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/HISHISLYSt"/>
@@ -439813,12 +438682,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03670e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03670e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03670c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03670c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -439827,7 +438696,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10828" sboTerm="SBO:0000185" id="MAR10828" name="Transport of HisLysAla, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10828" sboTerm="SBO:0000185" id="R_MAR10828" name="Transport of HisLysAla, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -439835,7 +438704,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10828">
+            <rdf:Description rdf:about="#R_MAR10828">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/HISLYSALAt"/>
@@ -439846,12 +438715,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03671e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03671e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03671c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03671c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -439860,7 +438729,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10829" sboTerm="SBO:0000185" id="MAR10829" name="Transport of HisLysGlu, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10829" sboTerm="SBO:0000185" id="R_MAR10829" name="Transport of HisLysGlu, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -439868,7 +438737,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10829">
+            <rdf:Description rdf:about="#R_MAR10829">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/HISLYSGLUt"/>
@@ -439879,12 +438748,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03672e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03672e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03672c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03672c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -439893,7 +438762,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10830" sboTerm="SBO:0000185" id="MAR10830" name="Transport of HisLysIle, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10830" sboTerm="SBO:0000185" id="R_MAR10830" name="Transport of HisLysIle, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -439901,7 +438770,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10830">
+            <rdf:Description rdf:about="#R_MAR10830">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/HISLYSILEt"/>
@@ -439912,12 +438781,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03673e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03673e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03673c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03673c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -439926,7 +438795,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10831" sboTerm="SBO:0000185" id="MAR10831" name="Transport of HisLysThr, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10831" sboTerm="SBO:0000185" id="R_MAR10831" name="Transport of HisLysThr, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -439934,7 +438803,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10831">
+            <rdf:Description rdf:about="#R_MAR10831">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/HISLYSTHRt"/>
@@ -439945,12 +438814,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03674e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03674e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03674c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03674c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -439959,7 +438828,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10832" sboTerm="SBO:0000185" id="MAR10832" name="Transport of HisLysVal, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10832" sboTerm="SBO:0000185" id="R_MAR10832" name="Transport of HisLysVal, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -439967,7 +438836,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10832">
+            <rdf:Description rdf:about="#R_MAR10832">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/HISLYSVALt"/>
@@ -439978,12 +438847,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03675e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03675e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03675c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03675c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -439992,7 +438861,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10833" sboTerm="SBO:0000185" id="MAR10833" name="Transport of HisMet, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10833" sboTerm="SBO:0000185" id="R_MAR10833" name="Transport of HisMet, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -440000,7 +438869,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10833">
+            <rdf:Description rdf:about="#R_MAR10833">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/HISMETt"/>
@@ -440011,12 +438880,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03676e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03676e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03676c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03676c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -440025,7 +438894,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10834" sboTerm="SBO:0000185" id="MAR10834" name="Transport of HisMetGln, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10834" sboTerm="SBO:0000185" id="R_MAR10834" name="Transport of HisMetGln, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -440033,7 +438902,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10834">
+            <rdf:Description rdf:about="#R_MAR10834">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/HISMETGLNt"/>
@@ -440044,12 +438913,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03677e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03677e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03677c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03677c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -440058,7 +438927,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10835" sboTerm="SBO:0000185" id="MAR10835" name="Transport of HisPheArg, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10835" sboTerm="SBO:0000185" id="R_MAR10835" name="Transport of HisPheArg, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -440066,7 +438935,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10835">
+            <rdf:Description rdf:about="#R_MAR10835">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/HISPHEARGt"/>
@@ -440077,12 +438946,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03678e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03678e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03678c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03678c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -440091,7 +438960,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10836" sboTerm="SBO:0000185" id="MAR10836" name="Transport of HisProLys, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10836" sboTerm="SBO:0000185" id="R_MAR10836" name="Transport of HisProLys, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -440099,7 +438968,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10836">
+            <rdf:Description rdf:about="#R_MAR10836">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/HISPROLYSt"/>
@@ -440110,12 +438979,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03679e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03679e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03679c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03679c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -440124,7 +438993,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10837" sboTerm="SBO:0000185" id="MAR10837" name="Transport of HisTrpHis, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10837" sboTerm="SBO:0000185" id="R_MAR10837" name="Transport of HisTrpHis, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -440132,7 +439001,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10837">
+            <rdf:Description rdf:about="#R_MAR10837">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/HISTRPHISt"/>
@@ -440143,12 +439012,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03680e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03680e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03680c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03680c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -440157,7 +439026,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10838" sboTerm="SBO:0000185" id="MAR10838" name="Transport of IleArgIle, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10838" sboTerm="SBO:0000185" id="R_MAR10838" name="Transport of IleArgIle, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -440165,7 +439034,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10838">
+            <rdf:Description rdf:about="#R_MAR10838">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ILEARGILEt"/>
@@ -440176,12 +439045,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03693e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03693e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03693c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03693c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -440190,7 +439059,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10839" sboTerm="SBO:0000185" id="MAR10839" name="Transport of IleAsnHis, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10839" sboTerm="SBO:0000185" id="R_MAR10839" name="Transport of IleAsnHis, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -440198,7 +439067,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10839">
+            <rdf:Description rdf:about="#R_MAR10839">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ILEASNHISt"/>
@@ -440209,12 +439078,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03694e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03694e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03694c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03694c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -440223,7 +439092,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10840" sboTerm="SBO:0000185" id="MAR10840" name="Transport of IleAsp, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10840" sboTerm="SBO:0000185" id="R_MAR10840" name="Transport of IleAsp, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -440231,7 +439100,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10840">
+            <rdf:Description rdf:about="#R_MAR10840">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ILEASPt"/>
@@ -440242,12 +439111,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03695e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03695e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03695c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03695c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -440256,7 +439125,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10841" sboTerm="SBO:0000185" id="MAR10841" name="Transport of IleGlnGlu, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10841" sboTerm="SBO:0000185" id="R_MAR10841" name="Transport of IleGlnGlu, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -440264,7 +439133,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10841">
+            <rdf:Description rdf:about="#R_MAR10841">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ILEGLNGLUt"/>
@@ -440275,12 +439144,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03696e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03696e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03696c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03696c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -440289,7 +439158,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10842" sboTerm="SBO:0000185" id="MAR10842" name="Transport of IleGlyArg, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10842" sboTerm="SBO:0000185" id="R_MAR10842" name="Transport of IleGlyArg, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -440297,7 +439166,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10842">
+            <rdf:Description rdf:about="#R_MAR10842">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ILEGLYARGt"/>
@@ -440308,12 +439177,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03697e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03697e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03697c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03697c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -440322,7 +439191,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10843" sboTerm="SBO:0000185" id="MAR10843" name="Transport of IleProLys, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10843" sboTerm="SBO:0000185" id="R_MAR10843" name="Transport of IleProLys, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -440330,7 +439199,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10843">
+            <rdf:Description rdf:about="#R_MAR10843">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ILEPROLYSt"/>
@@ -440341,12 +439210,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03698e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03698e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03698c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03698c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -440355,7 +439224,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10844" sboTerm="SBO:0000185" id="MAR10844" name="Transport of IleSerArg, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10844" sboTerm="SBO:0000185" id="R_MAR10844" name="Transport of IleSerArg, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -440363,7 +439232,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10844">
+            <rdf:Description rdf:about="#R_MAR10844">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ILESERARGt"/>
@@ -440374,12 +439243,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03699e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03699e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03699c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03699c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -440388,7 +439257,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10845" sboTerm="SBO:0000185" id="MAR10845" name="Transport of IleTrptyr, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10845" sboTerm="SBO:0000185" id="R_MAR10845" name="Transport of IleTrptyr, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -440396,7 +439265,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10845">
+            <rdf:Description rdf:about="#R_MAR10845">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ILETRPTYRt"/>
@@ -440407,12 +439276,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03700e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03700e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03700c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03700c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -440421,7 +439290,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10846" sboTerm="SBO:0000185" id="MAR10846" name="Transport of LeuAlaArg, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10846" sboTerm="SBO:0000185" id="R_MAR10846" name="Transport of LeuAlaArg, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -440429,7 +439298,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10846">
+            <rdf:Description rdf:about="#R_MAR10846">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/LEUALAARGt"/>
@@ -440440,12 +439309,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03711e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03711e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03711c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03711c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -440454,7 +439323,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10847" sboTerm="SBO:0000185" id="MAR10847" name="Transport of LeuAsnAsp, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10847" sboTerm="SBO:0000185" id="R_MAR10847" name="Transport of LeuAsnAsp, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -440462,7 +439331,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10847">
+            <rdf:Description rdf:about="#R_MAR10847">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/LEUASNASPt"/>
@@ -440473,12 +439342,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03712e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03712e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03712c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03712c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -440487,7 +439356,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10848" sboTerm="SBO:0000185" id="MAR10848" name="Transport of LeuAspLys, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10848" sboTerm="SBO:0000185" id="R_MAR10848" name="Transport of LeuAspLys, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -440495,7 +439364,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10848">
+            <rdf:Description rdf:about="#R_MAR10848">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/LEUASPLYSt"/>
@@ -440506,12 +439375,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03713e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03713e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03713c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03713c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -440520,7 +439389,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10849" sboTerm="SBO:0000185" id="MAR10849" name="Transport of LeuLeuTrp, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10849" sboTerm="SBO:0000185" id="R_MAR10849" name="Transport of LeuLeuTrp, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -440528,7 +439397,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10849">
+            <rdf:Description rdf:about="#R_MAR10849">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/LEULEUTRPt"/>
@@ -440539,12 +439408,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03716e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03716e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03716c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03716c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -440553,7 +439422,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10850" sboTerm="SBO:0000185" id="MAR10850" name="Transport of LeuPro, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10850" sboTerm="SBO:0000185" id="R_MAR10850" name="Transport of LeuPro, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -440561,7 +439430,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10850">
+            <rdf:Description rdf:about="#R_MAR10850">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/LEUPROt"/>
@@ -440572,12 +439441,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03717e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03717e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03717c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03717c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -440586,7 +439455,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10851" sboTerm="SBO:0000185" id="MAR10851" name="Transport of LeuProArg, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10851" sboTerm="SBO:0000185" id="R_MAR10851" name="Transport of LeuProArg, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -440594,7 +439463,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10851">
+            <rdf:Description rdf:about="#R_MAR10851">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/LEUPROARGt"/>
@@ -440605,12 +439474,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03718e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03718e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03718c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03718c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -440619,7 +439488,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10852" sboTerm="SBO:0000185" id="MAR10852" name="Transport of LeuSerTrp, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10852" sboTerm="SBO:0000185" id="R_MAR10852" name="Transport of LeuSerTrp, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -440627,7 +439496,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10852">
+            <rdf:Description rdf:about="#R_MAR10852">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/LEUSERTRPt"/>
@@ -440638,12 +439507,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03719e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03719e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03719c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03719c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -440652,7 +439521,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10853" sboTerm="SBO:0000185" id="MAR10853" name="Transport of LeuTrp, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10853" sboTerm="SBO:0000185" id="R_MAR10853" name="Transport of LeuTrp, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -440660,7 +439529,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10853">
+            <rdf:Description rdf:about="#R_MAR10853">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/LEUTRPt"/>
@@ -440671,12 +439540,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03720e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03720e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03720c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03720c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -440685,7 +439554,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10854" sboTerm="SBO:0000185" id="MAR10854" name="Transport of LeuTrpArg, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10854" sboTerm="SBO:0000185" id="R_MAR10854" name="Transport of LeuTrpArg, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -440693,7 +439562,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10854">
+            <rdf:Description rdf:about="#R_MAR10854">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/LEUTRPARGt"/>
@@ -440704,12 +439573,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03721e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03721e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03721c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03721c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -440718,7 +439587,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10855" sboTerm="SBO:0000185" id="MAR10855" name="Transport of Leutyrtyr, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10855" sboTerm="SBO:0000185" id="R_MAR10855" name="Transport of Leutyrtyr, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -440726,7 +439595,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10855">
+            <rdf:Description rdf:about="#R_MAR10855">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/LEUTYRTYRt"/>
@@ -440737,12 +439606,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03722e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03722e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03722c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03722c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -440751,7 +439620,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10856" sboTerm="SBO:0000185" id="MAR10856" name="Transport of LeuVal, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10856" sboTerm="SBO:0000185" id="R_MAR10856" name="Transport of LeuVal, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -440759,7 +439628,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10856">
+            <rdf:Description rdf:about="#R_MAR10856">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/LEUVALt"/>
@@ -440770,12 +439639,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03723e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03723e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03723c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03723c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -440784,7 +439653,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10857" sboTerm="SBO:0000185" id="MAR10857" name="Transport of LysArgLeu, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10857" sboTerm="SBO:0000185" id="R_MAR10857" name="Transport of LysArgLeu, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -440792,7 +439661,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10857">
+            <rdf:Description rdf:about="#R_MAR10857">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/LYSARGLEUt"/>
@@ -440803,12 +439672,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03738e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03738e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03738c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03738c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -440817,7 +439686,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10858" sboTerm="SBO:0000185" id="MAR10858" name="Transport of LysCysHis, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10858" sboTerm="SBO:0000185" id="R_MAR10858" name="Transport of LysCysHis, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -440825,7 +439694,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10858">
+            <rdf:Description rdf:about="#R_MAR10858">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/LYSCYSHISt"/>
@@ -440836,12 +439705,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03739e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03739e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03739c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03739c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -440850,7 +439719,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10859" sboTerm="SBO:0000185" id="MAR10859" name="Transport of LysGlnPhe, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10859" sboTerm="SBO:0000185" id="R_MAR10859" name="Transport of LysGlnPhe, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -440858,7 +439727,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10859">
+            <rdf:Description rdf:about="#R_MAR10859">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/LYSGLNPHEt"/>
@@ -440869,12 +439738,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03740e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03740e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03740c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03740c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -440883,7 +439752,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10860" sboTerm="SBO:0000185" id="MAR10860" name="Transport of LysGluGlu, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10860" sboTerm="SBO:0000185" id="R_MAR10860" name="Transport of LysGluGlu, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -440891,7 +439760,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10860">
+            <rdf:Description rdf:about="#R_MAR10860">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/LYSGLUGLUt"/>
@@ -440902,12 +439771,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03741e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03741e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03741c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03741c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -440916,7 +439785,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10861" sboTerm="SBO:0000185" id="MAR10861" name="Transport of LysLysLys, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10861" sboTerm="SBO:0000185" id="R_MAR10861" name="Transport of LysLysLys, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -440924,7 +439793,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10861">
+            <rdf:Description rdf:about="#R_MAR10861">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/LYSLYSLYSt"/>
@@ -440935,12 +439804,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03742e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03742e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03742c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03742c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -440949,7 +439818,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10862" sboTerm="SBO:0000185" id="MAR10862" name="Transport of LysPheIle, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10862" sboTerm="SBO:0000185" id="R_MAR10862" name="Transport of LysPheIle, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -440957,7 +439826,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10862">
+            <rdf:Description rdf:about="#R_MAR10862">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/LYSPHEILEt"/>
@@ -440968,12 +439837,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03743e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03743e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03743c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03743c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -440982,7 +439851,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10863" sboTerm="SBO:0000185" id="MAR10863" name="Transport of LysTrpArg, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10863" sboTerm="SBO:0000185" id="R_MAR10863" name="Transport of LysTrpArg, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -440990,7 +439859,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10863">
+            <rdf:Description rdf:about="#R_MAR10863">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/LYSTRPARGt"/>
@@ -441001,12 +439870,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03744e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03744e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03744c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03744c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -441015,7 +439884,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10864" sboTerm="SBO:0000185" id="MAR10864" name="Transport of LystyrIle, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10864" sboTerm="SBO:0000185" id="R_MAR10864" name="Transport of LystyrIle, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -441023,7 +439892,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10864">
+            <rdf:Description rdf:about="#R_MAR10864">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/LYSTYRILEt"/>
@@ -441034,12 +439903,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03745e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03745e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03745c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03745c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -441048,7 +439917,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10865" sboTerm="SBO:0000185" id="MAR10865" name="Transport of LysValPhe, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10865" sboTerm="SBO:0000185" id="R_MAR10865" name="Transport of LysValPhe, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -441056,7 +439925,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10865">
+            <rdf:Description rdf:about="#R_MAR10865">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/LYSVALPHEt"/>
@@ -441067,12 +439936,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03746e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03746e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03746c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03746c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -441081,7 +439950,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10866" sboTerm="SBO:0000185" id="MAR10866" name="Transport of LysValTrp, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10866" sboTerm="SBO:0000185" id="R_MAR10866" name="Transport of LysValTrp, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -441089,7 +439958,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10866">
+            <rdf:Description rdf:about="#R_MAR10866">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/LYSVALTRPt"/>
@@ -441100,12 +439969,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03747e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03747e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03747c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03747c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -441114,7 +439983,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10867" sboTerm="SBO:0000185" id="MAR10867" name="Transport of MetArgLeu, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10867" sboTerm="SBO:0000185" id="R_MAR10867" name="Transport of MetArgLeu, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -441122,7 +439991,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10867">
+            <rdf:Description rdf:about="#R_MAR10867">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/METARGLEUt"/>
@@ -441133,12 +440002,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03760e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03760e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03760c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03760c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -441147,7 +440016,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10868" sboTerm="SBO:0000185" id="MAR10868" name="Transport of MetAsntyr, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10868" sboTerm="SBO:0000185" id="R_MAR10868" name="Transport of MetAsntyr, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -441155,7 +440024,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10868">
+            <rdf:Description rdf:about="#R_MAR10868">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/METASNTYRt"/>
@@ -441166,12 +440035,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03761e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03761e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03761c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03761c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -441180,7 +440049,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10869" sboTerm="SBO:0000185" id="MAR10869" name="Transport of MetGlntyr, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10869" sboTerm="SBO:0000185" id="R_MAR10869" name="Transport of MetGlntyr, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -441188,7 +440057,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10869">
+            <rdf:Description rdf:about="#R_MAR10869">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/METGLNTYRt"/>
@@ -441199,12 +440068,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03762e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03762e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03762c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03762c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -441213,7 +440082,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10870" sboTerm="SBO:0000185" id="MAR10870" name="Transport of MetGlyArg, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10870" sboTerm="SBO:0000185" id="R_MAR10870" name="Transport of MetGlyArg, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -441221,7 +440090,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10870">
+            <rdf:Description rdf:about="#R_MAR10870">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/METGLYARGt"/>
@@ -441232,12 +440101,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03763e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03763e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03763c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03763c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -441246,7 +440115,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10871" sboTerm="SBO:0000185" id="MAR10871" name="Transport of MetHisLys, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10871" sboTerm="SBO:0000185" id="R_MAR10871" name="Transport of MetHisLys, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -441254,7 +440123,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10871">
+            <rdf:Description rdf:about="#R_MAR10871">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/METHISLYSt"/>
@@ -441265,12 +440134,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03764e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03764e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03764c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03764c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -441279,7 +440148,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10872" sboTerm="SBO:0000185" id="MAR10872" name="Transport of MetMetIle, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10872" sboTerm="SBO:0000185" id="R_MAR10872" name="Transport of MetMetIle, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -441287,7 +440156,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10872">
+            <rdf:Description rdf:about="#R_MAR10872">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/METMETILEt"/>
@@ -441298,12 +440167,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03767e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03767e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03767c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03767c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -441312,7 +440181,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10873" sboTerm="SBO:0000185" id="MAR10873" name="Transport of MetPheArg, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10873" sboTerm="SBO:0000185" id="R_MAR10873" name="Transport of MetPheArg, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -441320,7 +440189,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10873">
+            <rdf:Description rdf:about="#R_MAR10873">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/METPHEARGt"/>
@@ -441331,12 +440200,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03768e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03768e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03768c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03768c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -441345,7 +440214,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10874" sboTerm="SBO:0000185" id="MAR10874" name="Transport of MetTrpPhe, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10874" sboTerm="SBO:0000185" id="R_MAR10874" name="Transport of MetTrpPhe, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -441353,7 +440222,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10874">
+            <rdf:Description rdf:about="#R_MAR10874">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/METTRPPHEt"/>
@@ -441364,12 +440233,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03769e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03769e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03769c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03769c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -441378,7 +440247,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10875" sboTerm="SBO:0000185" id="MAR10875" name="Transport of PheAsnMet, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10875" sboTerm="SBO:0000185" id="R_MAR10875" name="Transport of PheAsnMet, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -441386,7 +440255,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10875">
+            <rdf:Description rdf:about="#R_MAR10875">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PHEASNMETt"/>
@@ -441397,12 +440266,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03864e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03864e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03864c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03864c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -441411,7 +440280,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10876" sboTerm="SBO:0000185" id="MAR10876" name="Transport of PheAsp, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10876" sboTerm="SBO:0000185" id="R_MAR10876" name="Transport of PheAsp, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -441419,7 +440288,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10876">
+            <rdf:Description rdf:about="#R_MAR10876">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PHEASPt"/>
@@ -441430,12 +440299,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03865e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03865e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03865c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03865c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -441444,7 +440313,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10877" sboTerm="SBO:0000185" id="MAR10877" name="Transport of PheGlnPhe, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10877" sboTerm="SBO:0000185" id="R_MAR10877" name="Transport of PheGlnPhe, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -441452,7 +440321,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10877">
+            <rdf:Description rdf:about="#R_MAR10877">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PHEGLNPHEt"/>
@@ -441463,12 +440332,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03866e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03866e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03866c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03866c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -441477,7 +440346,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10878" sboTerm="SBO:0000185" id="MAR10878" name="Transport of PheLeu, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10878" sboTerm="SBO:0000185" id="R_MAR10878" name="Transport of PheLeu, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -441485,7 +440354,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10878">
+            <rdf:Description rdf:about="#R_MAR10878">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PHELEUt"/>
@@ -441496,12 +440365,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03867e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03867e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03867c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03867c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -441510,7 +440379,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10879" sboTerm="SBO:0000185" id="MAR10879" name="Transport of PheLeuAsp, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10879" sboTerm="SBO:0000185" id="R_MAR10879" name="Transport of PheLeuAsp, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -441518,7 +440387,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10879">
+            <rdf:Description rdf:about="#R_MAR10879">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PHELEUASPt"/>
@@ -441529,12 +440398,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03868e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03868e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03868c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03868c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -441543,7 +440412,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10880" sboTerm="SBO:0000185" id="MAR10880" name="Transport of PheLeuHis, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10880" sboTerm="SBO:0000185" id="R_MAR10880" name="Transport of PheLeuHis, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -441551,7 +440420,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10880">
+            <rdf:Description rdf:about="#R_MAR10880">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PHELEUHISt"/>
@@ -441562,12 +440431,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03869e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03869e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03869c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03869c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -441576,7 +440445,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10881" sboTerm="SBO:0000185" id="MAR10881" name="Transport of PheLysAla, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10881" sboTerm="SBO:0000185" id="R_MAR10881" name="Transport of PheLysAla, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -441584,7 +440453,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10881">
+            <rdf:Description rdf:about="#R_MAR10881">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PHELYSALAt"/>
@@ -441595,12 +440464,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03870e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03870e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03870c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03870c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -441609,7 +440478,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10882" sboTerm="SBO:0000185" id="MAR10882" name="Transport of PheLysPro, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10882" sboTerm="SBO:0000185" id="R_MAR10882" name="Transport of PheLysPro, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -441617,7 +440486,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10882">
+            <rdf:Description rdf:about="#R_MAR10882">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PHELYSPROt"/>
@@ -441628,12 +440497,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03871e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03871e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03871c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03871c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -441642,7 +440511,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10883" sboTerm="SBO:0000185" id="MAR10883" name="Transport of PhePhe, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10883" sboTerm="SBO:0000185" id="R_MAR10883" name="Transport of PhePhe, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -441650,7 +440519,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10883">
+            <rdf:Description rdf:about="#R_MAR10883">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PHEPHEt"/>
@@ -441661,12 +440530,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03872e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03872e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03872c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03872c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -441675,7 +440544,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10884" sboTerm="SBO:0000185" id="MAR10884" name="Transport of PhePheAsn, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10884" sboTerm="SBO:0000185" id="R_MAR10884" name="Transport of PhePheAsn, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -441683,7 +440552,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10884">
+            <rdf:Description rdf:about="#R_MAR10884">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PHEPHEASNt"/>
@@ -441694,12 +440563,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03873e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03873e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03873c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03873c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -441708,7 +440577,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10885" sboTerm="SBO:0000185" id="MAR10885" name="Transport of PhePheThr, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10885" sboTerm="SBO:0000185" id="R_MAR10885" name="Transport of PhePheThr, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -441716,7 +440585,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10885">
+            <rdf:Description rdf:about="#R_MAR10885">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PHEPHETHRt"/>
@@ -441727,12 +440596,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03874e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03874e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03874c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03874c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -441741,7 +440610,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10886" sboTerm="SBO:0000185" id="MAR10886" name="Transport of PheProArg, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10886" sboTerm="SBO:0000185" id="R_MAR10886" name="Transport of PheProArg, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -441749,7 +440618,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10886">
+            <rdf:Description rdf:about="#R_MAR10886">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PHEPROARGt"/>
@@ -441760,12 +440629,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03875e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03875e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03875c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03875c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -441774,7 +440643,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10887" sboTerm="SBO:0000185" id="MAR10887" name="Transport of PheSerTrp, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10887" sboTerm="SBO:0000185" id="R_MAR10887" name="Transport of PheSerTrp, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -441782,7 +440651,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10887">
+            <rdf:Description rdf:about="#R_MAR10887">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PHESERTRPt"/>
@@ -441793,12 +440662,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03876e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03876e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03876c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03876c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -441807,7 +440676,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10888" sboTerm="SBO:0000185" id="MAR10888" name="Transport of PheThrLys, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10888" sboTerm="SBO:0000185" id="R_MAR10888" name="Transport of PheThrLys, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -441815,7 +440684,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10888">
+            <rdf:Description rdf:about="#R_MAR10888">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PHETHRLYSt"/>
@@ -441826,12 +440695,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03877e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03877e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03877c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03877c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -441840,7 +440709,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10889" sboTerm="SBO:0000185" id="MAR10889" name="Transport of PheTrpLeu, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10889" sboTerm="SBO:0000185" id="R_MAR10889" name="Transport of PheTrpLeu, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -441848,7 +440717,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10889">
+            <rdf:Description rdf:about="#R_MAR10889">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PHETRPLEUt"/>
@@ -441859,12 +440728,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03878e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03878e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03878c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03878c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -441873,7 +440742,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10890" sboTerm="SBO:0000185" id="MAR10890" name="Transport of Phetyr, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10890" sboTerm="SBO:0000185" id="R_MAR10890" name="Transport of Phetyr, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -441881,7 +440750,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10890">
+            <rdf:Description rdf:about="#R_MAR10890">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PHETYRt"/>
@@ -441892,12 +440761,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03879e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03879e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03879c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03879c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -441906,7 +440775,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10891" sboTerm="SBO:0000185" id="MAR10891" name="Transport of PhetyrGln, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10891" sboTerm="SBO:0000185" id="R_MAR10891" name="Transport of PhetyrGln, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -441914,7 +440783,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10891">
+            <rdf:Description rdf:about="#R_MAR10891">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PHETYRGLNt"/>
@@ -441925,12 +440794,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03880e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03880e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03880c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03880c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -441939,7 +440808,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10892" sboTerm="SBO:0000185" id="MAR10892" name="Transport of PhetyrLys, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10892" sboTerm="SBO:0000185" id="R_MAR10892" name="Transport of PhetyrLys, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -441947,7 +440816,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10892">
+            <rdf:Description rdf:about="#R_MAR10892">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PHETYRLYSt"/>
@@ -441958,12 +440827,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03881e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03881e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03881c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03881c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -441972,7 +440841,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10893" sboTerm="SBO:0000185" id="MAR10893" name="Transport of ProArgAsp, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10893" sboTerm="SBO:0000185" id="R_MAR10893" name="Transport of ProArgAsp, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -441980,7 +440849,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10893">
+            <rdf:Description rdf:about="#R_MAR10893">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PROARGASPt"/>
@@ -441991,12 +440860,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03888e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03888e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03888c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03888c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -442005,7 +440874,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10894" sboTerm="SBO:0000185" id="MAR10894" name="Transport of ProArgCys, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10894" sboTerm="SBO:0000185" id="R_MAR10894" name="Transport of ProArgCys, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -442013,7 +440882,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10894">
+            <rdf:Description rdf:about="#R_MAR10894">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PROARGCYSt"/>
@@ -442024,12 +440893,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03889e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03889e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03889c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03889c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -442038,7 +440907,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10895" sboTerm="SBO:0000185" id="MAR10895" name="Transport of ProAsnCys, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10895" sboTerm="SBO:0000185" id="R_MAR10895" name="Transport of ProAsnCys, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -442046,7 +440915,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10895">
+            <rdf:Description rdf:about="#R_MAR10895">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PROASNCYSt"/>
@@ -442057,12 +440926,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03890e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03890e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03890c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03890c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -442071,7 +440940,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10896" sboTerm="SBO:0000185" id="MAR10896" name="Transport of ProCys, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10896" sboTerm="SBO:0000185" id="R_MAR10896" name="Transport of ProCys, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -442079,7 +440948,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10896">
+            <rdf:Description rdf:about="#R_MAR10896">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PROCYSt"/>
@@ -442090,12 +440959,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03891e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03891e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03891c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03891c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -442104,7 +440973,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10897" sboTerm="SBO:0000185" id="MAR10897" name="Transport of ProGlnPro, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10897" sboTerm="SBO:0000185" id="R_MAR10897" name="Transport of ProGlnPro, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -442112,7 +440981,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10897">
+            <rdf:Description rdf:about="#R_MAR10897">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PROGLNPROt"/>
@@ -442123,12 +440992,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03894e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03894e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03894c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03894c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -442137,7 +441006,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10898" sboTerm="SBO:0000185" id="MAR10898" name="Transport of ProGluLys, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10898" sboTerm="SBO:0000185" id="R_MAR10898" name="Transport of ProGluLys, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -442145,7 +441014,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10898">
+            <rdf:Description rdf:about="#R_MAR10898">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PROGLULYSt"/>
@@ -442156,12 +441025,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03895e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03895e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03895c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03895c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -442170,7 +441039,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10899" sboTerm="SBO:0000185" id="MAR10899" name="Transport of ProHis, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10899" sboTerm="SBO:0000185" id="R_MAR10899" name="Transport of ProHis, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -442178,7 +441047,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10899">
+            <rdf:Description rdf:about="#R_MAR10899">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PROHISt"/>
@@ -442189,12 +441058,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03897e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03897e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03897c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03897c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -442203,7 +441072,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10900" sboTerm="SBO:0000185" id="MAR10900" name="Transport of ProHistyr, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10900" sboTerm="SBO:0000185" id="R_MAR10900" name="Transport of ProHistyr, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -442211,7 +441080,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10900">
+            <rdf:Description rdf:about="#R_MAR10900">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PROHISTYRt"/>
@@ -442222,12 +441091,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03898e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03898e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03898c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03898c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -442236,7 +441105,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10901" sboTerm="SBO:0000185" id="MAR10901" name="Transport of ProLeuArg, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10901" sboTerm="SBO:0000185" id="R_MAR10901" name="Transport of ProLeuArg, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -442244,7 +441113,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10901">
+            <rdf:Description rdf:about="#R_MAR10901">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PROLEUARGt"/>
@@ -442255,12 +441124,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03899e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03899e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03899c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03899c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -442269,7 +441138,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10902" sboTerm="SBO:0000185" id="MAR10902" name="Transport of ProLysPro, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10902" sboTerm="SBO:0000185" id="R_MAR10902" name="Transport of ProLysPro, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -442277,7 +441146,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10902">
+            <rdf:Description rdf:about="#R_MAR10902">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PROLYSPROt"/>
@@ -442288,12 +441157,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03900e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03900e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03900c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03900c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -442302,7 +441171,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10903" sboTerm="SBO:0000185" id="MAR10903" name="Transport of ProPhe, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10903" sboTerm="SBO:0000185" id="R_MAR10903" name="Transport of ProPhe, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -442310,7 +441179,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10903">
+            <rdf:Description rdf:about="#R_MAR10903">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PROPHEt"/>
@@ -442321,12 +441190,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03901e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03901e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03901c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03901c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -442335,7 +441204,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10904" sboTerm="SBO:0000185" id="MAR10904" name="Transport of ProProArg, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10904" sboTerm="SBO:0000185" id="R_MAR10904" name="Transport of ProProArg, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -442343,7 +441212,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10904">
+            <rdf:Description rdf:about="#R_MAR10904">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PROPROARGt"/>
@@ -442354,12 +441223,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03902e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03902e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03902c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03902c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -442368,7 +441237,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10905" sboTerm="SBO:0000185" id="MAR10905" name="Transport of ProProPro, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10905" sboTerm="SBO:0000185" id="R_MAR10905" name="Transport of ProProPro, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -442376,7 +441245,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10905">
+            <rdf:Description rdf:about="#R_MAR10905">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PROPROPROt"/>
@@ -442387,12 +441256,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03903e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03903e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03903c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03903c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -442401,7 +441270,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10906" sboTerm="SBO:0000185" id="MAR10906" name="Transport of ProTrpLys, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10906" sboTerm="SBO:0000185" id="R_MAR10906" name="Transport of ProTrpLys, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -442409,7 +441278,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10906">
+            <rdf:Description rdf:about="#R_MAR10906">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PROTRPLYSt"/>
@@ -442420,12 +441289,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03904e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03904e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03904c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03904c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -442434,7 +441303,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10907" sboTerm="SBO:0000185" id="MAR10907" name="Transport of ProTrpThr, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10907" sboTerm="SBO:0000185" id="R_MAR10907" name="Transport of ProTrpThr, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -442442,7 +441311,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10907">
+            <rdf:Description rdf:about="#R_MAR10907">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PROTRPTHRt"/>
@@ -442453,12 +441322,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03905e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03905e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03905c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03905c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -442467,7 +441336,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10908" sboTerm="SBO:0000185" id="MAR10908" name="Transport of ProValGln, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10908" sboTerm="SBO:0000185" id="R_MAR10908" name="Transport of ProValGln, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -442475,7 +441344,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10908">
+            <rdf:Description rdf:about="#R_MAR10908">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PROVALGLNt"/>
@@ -442486,12 +441355,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03906e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03906e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03906c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03906c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -442500,7 +441369,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10909" sboTerm="SBO:0000185" id="MAR10909" name="Transport of SerArgAla, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10909" sboTerm="SBO:0000185" id="R_MAR10909" name="Transport of SerArgAla, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -442508,7 +441377,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10909">
+            <rdf:Description rdf:about="#R_MAR10909">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/SERARGALAt"/>
@@ -442519,12 +441388,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03925e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03925e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03925c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03925c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -442533,7 +441402,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10910" sboTerm="SBO:0000185" id="MAR10910" name="Transport of SerArgTrp, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10910" sboTerm="SBO:0000185" id="R_MAR10910" name="Transport of SerArgTrp, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -442541,7 +441410,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10910">
+            <rdf:Description rdf:about="#R_MAR10910">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/SERARGTRPt"/>
@@ -442552,12 +441421,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03926e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03926e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03926c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03926c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -442566,7 +441435,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10911" sboTerm="SBO:0000185" id="MAR10911" name="Transport of SerCysArg, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10911" sboTerm="SBO:0000185" id="R_MAR10911" name="Transport of SerCysArg, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -442574,7 +441443,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10911">
+            <rdf:Description rdf:about="#R_MAR10911">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/SERCYSARGt"/>
@@ -442585,12 +441454,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03927e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03927e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03927c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03927c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -442599,7 +441468,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10912" sboTerm="SBO:0000185" id="MAR10912" name="Transport of SerGlyGlu, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10912" sboTerm="SBO:0000185" id="R_MAR10912" name="Transport of SerGlyGlu, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -442607,7 +441476,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10912">
+            <rdf:Description rdf:about="#R_MAR10912">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/SERGLYGLUt"/>
@@ -442618,12 +441487,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03928e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03928e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03928c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03928c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -442632,7 +441501,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10913" sboTerm="SBO:0000185" id="MAR10913" name="Transport of SerLysHis, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10913" sboTerm="SBO:0000185" id="R_MAR10913" name="Transport of SerLysHis, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -442640,7 +441509,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10913">
+            <rdf:Description rdf:about="#R_MAR10913">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/SERLYSHISt"/>
@@ -442651,12 +441520,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03929e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03929e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03929c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03929c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -442665,7 +441534,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10914" sboTerm="SBO:0000185" id="MAR10914" name="Transport of SerPheLys, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10914" sboTerm="SBO:0000185" id="R_MAR10914" name="Transport of SerPheLys, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -442673,7 +441542,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10914">
+            <rdf:Description rdf:about="#R_MAR10914">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/SERPHELYSt"/>
@@ -442684,12 +441553,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03930e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03930e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03930c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03930c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -442698,7 +441567,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10915" sboTerm="SBO:0000185" id="MAR10915" name="Transport of SerTrpHis, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10915" sboTerm="SBO:0000185" id="R_MAR10915" name="Transport of SerTrpHis, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -442706,7 +441575,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10915">
+            <rdf:Description rdf:about="#R_MAR10915">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/SERTRPHISt"/>
@@ -442717,12 +441586,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03931e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03931e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03931c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03931c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -442731,7 +441600,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10916" sboTerm="SBO:0000185" id="MAR10916" name="Transport of ThrArgtyr, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10916" sboTerm="SBO:0000185" id="R_MAR10916" name="Transport of ThrArgtyr, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -442739,7 +441608,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10916">
+            <rdf:Description rdf:about="#R_MAR10916">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/THRARGTYRt"/>
@@ -442750,12 +441619,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03983e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03983e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03983c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03983c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -442764,7 +441633,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10917" sboTerm="SBO:0000185" id="MAR10917" name="Transport of ThrAsntyr, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10917" sboTerm="SBO:0000185" id="R_MAR10917" name="Transport of ThrAsntyr, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -442772,7 +441641,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10917">
+            <rdf:Description rdf:about="#R_MAR10917">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/THRASNTYRt"/>
@@ -442783,12 +441652,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03984e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03984e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03984c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03984c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -442797,7 +441666,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10918" sboTerm="SBO:0000185" id="MAR10918" name="Transport of ThrGlnGlu, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10918" sboTerm="SBO:0000185" id="R_MAR10918" name="Transport of ThrGlnGlu, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -442805,7 +441674,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10918">
+            <rdf:Description rdf:about="#R_MAR10918">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/THRGLNGLUt"/>
@@ -442816,12 +441685,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03986e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03986e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03986c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03986c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -442830,7 +441699,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10919" sboTerm="SBO:0000185" id="MAR10919" name="Transport of ThrGlntyr, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10919" sboTerm="SBO:0000185" id="R_MAR10919" name="Transport of ThrGlntyr, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -442838,7 +441707,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10919">
+            <rdf:Description rdf:about="#R_MAR10919">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/THRGLNTYRt"/>
@@ -442849,12 +441718,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03987e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03987e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03987c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03987c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -442863,7 +441732,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10920" sboTerm="SBO:0000185" id="MAR10920" name="Transport of ThrHisHis, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10920" sboTerm="SBO:0000185" id="R_MAR10920" name="Transport of ThrHisHis, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -442871,7 +441740,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10920">
+            <rdf:Description rdf:about="#R_MAR10920">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/THRHISHISt"/>
@@ -442882,12 +441751,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03988e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03988e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03988c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03988c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -442896,7 +441765,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10921" sboTerm="SBO:0000185" id="MAR10921" name="Transport of ThrIleArg, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10921" sboTerm="SBO:0000185" id="R_MAR10921" name="Transport of ThrIleArg, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -442904,7 +441773,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10921">
+            <rdf:Description rdf:about="#R_MAR10921">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/THRILEARGt"/>
@@ -442915,12 +441784,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03989e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03989e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03989c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03989c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -442929,7 +441798,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10922" sboTerm="SBO:0000185" id="MAR10922" name="Transport of ThrMetArg, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10922" sboTerm="SBO:0000185" id="R_MAR10922" name="Transport of ThrMetArg, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -442937,7 +441806,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10922">
+            <rdf:Description rdf:about="#R_MAR10922">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/THRMETARGt"/>
@@ -442948,12 +441817,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03990e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03990e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03990c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03990c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -442962,7 +441831,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10923" sboTerm="SBO:0000185" id="MAR10923" name="Transport of ThrPheArg, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10923" sboTerm="SBO:0000185" id="R_MAR10923" name="Transport of ThrPheArg, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -442970,7 +441839,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10923">
+            <rdf:Description rdf:about="#R_MAR10923">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/THRPHEARGt"/>
@@ -442981,12 +441850,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03991e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03991e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03991c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03991c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -442995,7 +441864,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10924" sboTerm="SBO:0000185" id="MAR10924" name="Transport of ThrSerArg, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10924" sboTerm="SBO:0000185" id="R_MAR10924" name="Transport of ThrSerArg, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -443003,7 +441872,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10924">
+            <rdf:Description rdf:about="#R_MAR10924">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/THRSERARGt"/>
@@ -443014,12 +441883,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03992e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03992e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03992c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03992c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -443028,7 +441897,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10925" sboTerm="SBO:0000185" id="MAR10925" name="Transport of ThrThrArg, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10925" sboTerm="SBO:0000185" id="R_MAR10925" name="Transport of ThrThrArg, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -443036,7 +441905,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10925">
+            <rdf:Description rdf:about="#R_MAR10925">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/THRTHRARGt"/>
@@ -443047,12 +441916,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03993e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03993e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03993c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03993c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -443061,7 +441930,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10926" sboTerm="SBO:0000185" id="MAR10926" name="Transport of ThrtyrMet, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10926" sboTerm="SBO:0000185" id="R_MAR10926" name="Transport of ThrtyrMet, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -443069,7 +441938,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10926">
+            <rdf:Description rdf:about="#R_MAR10926">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/THRTYRMETt"/>
@@ -443080,12 +441949,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03994e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03994e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03994c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03994c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -443094,7 +441963,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10927" sboTerm="SBO:0000185" id="MAR10927" name="Transport of TrpAlaPro, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10927" sboTerm="SBO:0000185" id="R_MAR10927" name="Transport of TrpAlaPro, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -443102,7 +441971,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10927">
+            <rdf:Description rdf:about="#R_MAR10927">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/TRPALAPROt"/>
@@ -443113,12 +441982,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM04008e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04008e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM04008c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04008c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -443127,7 +441996,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10928" sboTerm="SBO:0000185" id="MAR10928" name="Transport of TrpArgAla, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10928" sboTerm="SBO:0000185" id="R_MAR10928" name="Transport of TrpArgAla, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -443135,7 +442004,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10928">
+            <rdf:Description rdf:about="#R_MAR10928">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/TRPARGALAt"/>
@@ -443146,12 +442015,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM04009e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04009e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM04009c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04009c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -443160,7 +442029,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10929" sboTerm="SBO:0000185" id="MAR10929" name="Transport of TrpAspAsp, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10929" sboTerm="SBO:0000185" id="R_MAR10929" name="Transport of TrpAspAsp, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -443168,7 +442037,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10929">
+            <rdf:Description rdf:about="#R_MAR10929">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/TRPASPASPt"/>
@@ -443179,12 +442048,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM04010e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04010e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM04010c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04010c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -443193,7 +442062,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10930" sboTerm="SBO:0000185" id="MAR10930" name="Transport of TrpGlnGln, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10930" sboTerm="SBO:0000185" id="R_MAR10930" name="Transport of TrpGlnGln, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -443201,7 +442070,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10930">
+            <rdf:Description rdf:about="#R_MAR10930">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/TRPGLNGLNt"/>
@@ -443212,12 +442081,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM04011e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04011e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM04011c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04011c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -443226,7 +442095,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10931" sboTerm="SBO:0000185" id="MAR10931" name="Transport of TrpGluGly, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10931" sboTerm="SBO:0000185" id="R_MAR10931" name="Transport of TrpGluGly, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -443234,7 +442103,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10931">
+            <rdf:Description rdf:about="#R_MAR10931">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/TRPGLUGLYt"/>
@@ -443245,12 +442114,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM04012e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04012e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM04012c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04012c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -443259,7 +442128,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10932" sboTerm="SBO:0000185" id="MAR10932" name="Transport of TrpGluLeu, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10932" sboTerm="SBO:0000185" id="R_MAR10932" name="Transport of TrpGluLeu, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -443267,7 +442136,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10932">
+            <rdf:Description rdf:about="#R_MAR10932">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/TRPGLULEUt"/>
@@ -443278,12 +442147,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM04013e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04013e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM04013c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04013c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -443292,7 +442161,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10933" sboTerm="SBO:0000185" id="MAR10933" name="Transport of TrpGluPro, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10933" sboTerm="SBO:0000185" id="R_MAR10933" name="Transport of TrpGluPro, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -443300,7 +442169,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10933">
+            <rdf:Description rdf:about="#R_MAR10933">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/TRPGLUPROt"/>
@@ -443311,12 +442180,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM04014e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04014e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM04014c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04014c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -443325,7 +442194,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10934" sboTerm="SBO:0000185" id="MAR10934" name="Transport of TrpGlutyr, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10934" sboTerm="SBO:0000185" id="R_MAR10934" name="Transport of TrpGlutyr, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -443333,7 +442202,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10934">
+            <rdf:Description rdf:about="#R_MAR10934">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/TRPGLUTYRt"/>
@@ -443344,12 +442213,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM04015e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04015e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM04015c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04015c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -443358,7 +442227,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10935" sboTerm="SBO:0000185" id="MAR10935" name="Transport of TrpGlyLeu, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10935" sboTerm="SBO:0000185" id="R_MAR10935" name="Transport of TrpGlyLeu, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -443366,7 +442235,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10935">
+            <rdf:Description rdf:about="#R_MAR10935">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/TRPGLYLEUt"/>
@@ -443377,12 +442246,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM04017e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04017e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM04017c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04017c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -443391,7 +442260,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10936" sboTerm="SBO:0000185" id="MAR10936" name="Transport of TrpGlyPhe, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10936" sboTerm="SBO:0000185" id="R_MAR10936" name="Transport of TrpGlyPhe, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -443399,7 +442268,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10936">
+            <rdf:Description rdf:about="#R_MAR10936">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/TRPGLYPHEt"/>
@@ -443410,12 +442279,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM04018e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04018e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM04018c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04018c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -443424,7 +442293,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10937" sboTerm="SBO:0000185" id="MAR10937" name="Transport of TrpGlyVal, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10937" sboTerm="SBO:0000185" id="R_MAR10937" name="Transport of TrpGlyVal, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -443432,7 +442301,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10937">
+            <rdf:Description rdf:about="#R_MAR10937">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/TRPGLYVALt"/>
@@ -443443,12 +442312,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM04019e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04019e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM04019c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04019c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -443457,7 +442326,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10938" sboTerm="SBO:0000185" id="MAR10938" name="Transport of TrpHisMet, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10938" sboTerm="SBO:0000185" id="R_MAR10938" name="Transport of TrpHisMet, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -443465,7 +442334,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10938">
+            <rdf:Description rdf:about="#R_MAR10938">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/TRPHISMETt"/>
@@ -443476,12 +442345,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM04020e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04020e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM04020c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04020c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -443490,7 +442359,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10939" sboTerm="SBO:0000185" id="MAR10939" name="Transport of TrpIleLys, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10939" sboTerm="SBO:0000185" id="R_MAR10939" name="Transport of TrpIleLys, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -443498,7 +442367,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10939">
+            <rdf:Description rdf:about="#R_MAR10939">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/TRPILELYSt"/>
@@ -443509,12 +442378,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM04021e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04021e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM04021c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04021c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -443523,7 +442392,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10940" sboTerm="SBO:0000185" id="MAR10940" name="Transport of TrpIleTrp, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10940" sboTerm="SBO:0000185" id="R_MAR10940" name="Transport of TrpIleTrp, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -443531,7 +442400,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10940">
+            <rdf:Description rdf:about="#R_MAR10940">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/TRPILETRPt"/>
@@ -443542,12 +442411,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM04022e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04022e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM04022c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04022c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -443556,7 +442425,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10941" sboTerm="SBO:0000185" id="MAR10941" name="Transport of TrpLeuVal, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10941" sboTerm="SBO:0000185" id="R_MAR10941" name="Transport of TrpLeuVal, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -443564,7 +442433,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10941">
+            <rdf:Description rdf:about="#R_MAR10941">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/TRPLEUVALt"/>
@@ -443575,12 +442444,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM04023e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04023e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM04023c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04023c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -443589,7 +442458,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10942" sboTerm="SBO:0000185" id="MAR10942" name="Transport of TrpLys, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10942" sboTerm="SBO:0000185" id="R_MAR10942" name="Transport of TrpLys, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -443597,7 +442466,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10942">
+            <rdf:Description rdf:about="#R_MAR10942">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/TRPLYSt"/>
@@ -443608,12 +442477,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM04024e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04024e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM04024c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04024c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -443622,7 +442491,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10943" sboTerm="SBO:0000185" id="MAR10943" name="Transport of TrpMetArg, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10943" sboTerm="SBO:0000185" id="R_MAR10943" name="Transport of TrpMetArg, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -443630,7 +442499,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10943">
+            <rdf:Description rdf:about="#R_MAR10943">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/TRPMETARGt"/>
@@ -443641,12 +442510,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM04025e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04025e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM04025c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04025c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -443655,7 +442524,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10944" sboTerm="SBO:0000185" id="MAR10944" name="Transport of TrpMetVal, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10944" sboTerm="SBO:0000185" id="R_MAR10944" name="Transport of TrpMetVal, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -443663,7 +442532,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10944">
+            <rdf:Description rdf:about="#R_MAR10944">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/TRPMETVALt"/>
@@ -443674,12 +442543,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM04026e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04026e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM04026c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04026c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -443688,7 +442557,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10945" sboTerm="SBO:0000185" id="MAR10945" name="Transport of TrpPhe, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10945" sboTerm="SBO:0000185" id="R_MAR10945" name="Transport of TrpPhe, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -443696,7 +442565,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10945">
+            <rdf:Description rdf:about="#R_MAR10945">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/TRPPHEt"/>
@@ -443707,12 +442576,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM04027e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04027e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM04027c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04027c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -443721,7 +442590,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10946" sboTerm="SBO:0000185" id="MAR10946" name="Transport of TrpProGly, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10946" sboTerm="SBO:0000185" id="R_MAR10946" name="Transport of TrpProGly, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -443729,7 +442598,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10946">
+            <rdf:Description rdf:about="#R_MAR10946">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/TRPPROGLYt"/>
@@ -443740,12 +442609,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM04028e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04028e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM04028c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04028c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -443754,7 +442623,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10947" sboTerm="SBO:0000185" id="MAR10947" name="Transport of TrpProLeu, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10947" sboTerm="SBO:0000185" id="R_MAR10947" name="Transport of TrpProLeu, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -443762,7 +442631,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10947">
+            <rdf:Description rdf:about="#R_MAR10947">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/TRPPROLEUt"/>
@@ -443773,12 +442642,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM04029e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04029e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM04029c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04029c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -443787,7 +442656,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10948" sboTerm="SBO:0000185" id="MAR10948" name="Transport of TrpProVal, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10948" sboTerm="SBO:0000185" id="R_MAR10948" name="Transport of TrpProVal, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -443795,7 +442664,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10948">
+            <rdf:Description rdf:about="#R_MAR10948">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/TRPPROVALt"/>
@@ -443806,12 +442675,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM04030e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04030e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM04030c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04030c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -443820,7 +442689,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10949" sboTerm="SBO:0000185" id="MAR10949" name="Transport of TrpSertyr, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10949" sboTerm="SBO:0000185" id="R_MAR10949" name="Transport of TrpSertyr, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -443828,7 +442697,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10949">
+            <rdf:Description rdf:about="#R_MAR10949">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/TRPSERTYRt"/>
@@ -443839,12 +442708,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM04031e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04031e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM04031c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04031c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -443853,7 +442722,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10950" sboTerm="SBO:0000185" id="MAR10950" name="Transport of TrpThrGlu, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10950" sboTerm="SBO:0000185" id="R_MAR10950" name="Transport of TrpThrGlu, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -443861,7 +442730,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10950">
+            <rdf:Description rdf:about="#R_MAR10950">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/TRPTHRGLUt"/>
@@ -443872,12 +442741,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM04032e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04032e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM04032c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04032c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -443886,7 +442755,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10951" sboTerm="SBO:0000185" id="MAR10951" name="Transport of TrpThrIle, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10951" sboTerm="SBO:0000185" id="R_MAR10951" name="Transport of TrpThrIle, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -443894,7 +442763,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10951">
+            <rdf:Description rdf:about="#R_MAR10951">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/TRPTHRILEt"/>
@@ -443905,12 +442774,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM04033e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04033e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM04033c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04033c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -443919,7 +442788,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10952" sboTerm="SBO:0000185" id="MAR10952" name="Transport of TrpThrtyr, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10952" sboTerm="SBO:0000185" id="R_MAR10952" name="Transport of TrpThrtyr, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -443927,7 +442796,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10952">
+            <rdf:Description rdf:about="#R_MAR10952">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/TRPTHRTYRt"/>
@@ -443938,12 +442807,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM04034e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04034e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM04034c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04034c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -443952,7 +442821,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10953" sboTerm="SBO:0000185" id="MAR10953" name="Transport of TrptyrGln, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10953" sboTerm="SBO:0000185" id="R_MAR10953" name="Transport of TrptyrGln, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -443960,7 +442829,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10953">
+            <rdf:Description rdf:about="#R_MAR10953">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/TRPTYRGLNt"/>
@@ -443971,12 +442840,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM04035e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04035e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM04035c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04035c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -443985,7 +442854,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10954" sboTerm="SBO:0000185" id="MAR10954" name="Transport of Trptyrtyr, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10954" sboTerm="SBO:0000185" id="R_MAR10954" name="Transport of Trptyrtyr, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -443993,7 +442862,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10954">
+            <rdf:Description rdf:about="#R_MAR10954">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/TRPTYRTYRt"/>
@@ -444004,12 +442873,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM04036e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04036e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM04036c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04036c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -444018,7 +442887,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10955" sboTerm="SBO:0000185" id="MAR10955" name="Transport of TrpValAsp, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10955" sboTerm="SBO:0000185" id="R_MAR10955" name="Transport of TrpValAsp, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -444026,7 +442895,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10955">
+            <rdf:Description rdf:about="#R_MAR10955">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/TRPVALASPt"/>
@@ -444037,12 +442906,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM04037e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04037e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM04037c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04037c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -444051,7 +442920,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10956" sboTerm="SBO:0000185" id="MAR10956" name="Transport of TyrAla, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10956" sboTerm="SBO:0000185" id="R_MAR10956" name="Transport of TyrAla, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -444059,7 +442928,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10956">
+            <rdf:Description rdf:about="#R_MAR10956">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/TYRALAt"/>
@@ -444070,12 +442939,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM04043e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04043e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM04043c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04043c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -444084,7 +442953,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10957" sboTerm="SBO:0000185" id="MAR10957" name="Transport of TyrAlaPhe, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10957" sboTerm="SBO:0000185" id="R_MAR10957" name="Transport of TyrAlaPhe, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -444092,7 +442961,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10957">
+            <rdf:Description rdf:about="#R_MAR10957">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/TYRALAPHEt"/>
@@ -444103,12 +442972,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM04044e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04044e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM04044c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04044c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -444117,7 +442986,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10958" sboTerm="SBO:0000185" id="MAR10958" name="Transport of TyrArgGlu, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10958" sboTerm="SBO:0000185" id="R_MAR10958" name="Transport of TyrArgGlu, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -444125,7 +442994,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10958">
+            <rdf:Description rdf:about="#R_MAR10958">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/TYRARGGLUt"/>
@@ -444136,12 +443005,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM04045e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04045e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM04045c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04045c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -444150,7 +443019,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10959" sboTerm="SBO:0000185" id="MAR10959" name="Transport of TyrArgSer, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10959" sboTerm="SBO:0000185" id="R_MAR10959" name="Transport of TyrArgSer, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -444158,7 +443027,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10959">
+            <rdf:Description rdf:about="#R_MAR10959">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/TYRARGSERt"/>
@@ -444169,12 +443038,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM04046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04046e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM04046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04046c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -444183,7 +443052,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10960" sboTerm="SBO:0000185" id="MAR10960" name="Transport of TyrAspArg, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10960" sboTerm="SBO:0000185" id="R_MAR10960" name="Transport of TyrAspArg, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -444191,7 +443060,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10960">
+            <rdf:Description rdf:about="#R_MAR10960">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/TYRASPARGt"/>
@@ -444202,12 +443071,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM04047e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04047e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM04047c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04047c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -444216,7 +443085,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10961" sboTerm="SBO:0000185" id="MAR10961" name="Transport of TyrCysGly, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10961" sboTerm="SBO:0000185" id="R_MAR10961" name="Transport of TyrCysGly, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -444224,7 +443093,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10961">
+            <rdf:Description rdf:about="#R_MAR10961">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/TYRCYSGLYt"/>
@@ -444235,12 +443104,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM04048e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04048e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM04048c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04048c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -444249,7 +443118,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10962" sboTerm="SBO:0000185" id="MAR10962" name="Transport of TyrCysThr, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10962" sboTerm="SBO:0000185" id="R_MAR10962" name="Transport of TyrCysThr, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -444257,7 +443126,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10962">
+            <rdf:Description rdf:about="#R_MAR10962">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/TYRCYSTHRt"/>
@@ -444268,12 +443137,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM04049e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04049e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM04049c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04049c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -444282,7 +443151,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10963" sboTerm="SBO:0000185" id="MAR10963" name="Transport of TyrGlu, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10963" sboTerm="SBO:0000185" id="R_MAR10963" name="Transport of TyrGlu, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -444290,7 +443159,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10963">
+            <rdf:Description rdf:about="#R_MAR10963">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/TYRGLUt"/>
@@ -444301,12 +443170,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM04050e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04050e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM04050c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04050c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -444315,7 +443184,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10964" sboTerm="SBO:0000185" id="MAR10964" name="Transport of TyrLeuArg, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10964" sboTerm="SBO:0000185" id="R_MAR10964" name="Transport of TyrLeuArg, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -444323,7 +443192,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10964">
+            <rdf:Description rdf:about="#R_MAR10964">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/TYRLEUARGt"/>
@@ -444334,12 +443203,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM04051e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04051e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM04051c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04051c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -444348,7 +443217,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10965" sboTerm="SBO:0000185" id="MAR10965" name="Transport of TyrPhetyr, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10965" sboTerm="SBO:0000185" id="R_MAR10965" name="Transport of TyrPhetyr, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -444356,7 +443225,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10965">
+            <rdf:Description rdf:about="#R_MAR10965">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/TYRPHETYRt"/>
@@ -444367,12 +443236,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM04052e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04052e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM04052c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04052c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -444381,7 +443250,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10966" sboTerm="SBO:0000185" id="MAR10966" name="Transport of TyrThr, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10966" sboTerm="SBO:0000185" id="R_MAR10966" name="Transport of TyrThr, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -444389,7 +443258,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10966">
+            <rdf:Description rdf:about="#R_MAR10966">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/TYRTHRt"/>
@@ -444400,12 +443269,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM04053e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04053e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM04053c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04053c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -444414,7 +443283,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10967" sboTerm="SBO:0000185" id="MAR10967" name="Transport of TyrTrpPhe, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10967" sboTerm="SBO:0000185" id="R_MAR10967" name="Transport of TyrTrpPhe, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -444422,7 +443291,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10967">
+            <rdf:Description rdf:about="#R_MAR10967">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/TYRTRPPHEt"/>
@@ -444433,12 +443302,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM04054e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04054e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM04054c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04054c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -444447,7 +443316,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10968" sboTerm="SBO:0000185" id="MAR10968" name="Transport of Tyrtyr, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10968" sboTerm="SBO:0000185" id="R_MAR10968" name="Transport of Tyrtyr, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -444455,7 +443324,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10968">
+            <rdf:Description rdf:about="#R_MAR10968">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/TYRTYRt"/>
@@ -444466,12 +443335,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM04055e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04055e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM04055c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04055c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -444480,7 +443349,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10969" sboTerm="SBO:0000185" id="MAR10969" name="Transport of TyrValMet, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10969" sboTerm="SBO:0000185" id="R_MAR10969" name="Transport of TyrValMet, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -444488,7 +443357,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10969">
+            <rdf:Description rdf:about="#R_MAR10969">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/TYRVALMETt"/>
@@ -444499,12 +443368,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM04056e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04056e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM04056c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04056c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -444513,7 +443382,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10970" sboTerm="SBO:0000185" id="MAR10970" name="Transport of ValArgGly, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10970" sboTerm="SBO:0000185" id="R_MAR10970" name="Transport of ValArgGly, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -444521,7 +443390,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10970">
+            <rdf:Description rdf:about="#R_MAR10970">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/VALARGGLYt"/>
@@ -444532,12 +443401,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM04062e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04062e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM04062c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04062c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -444546,7 +443415,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10971" sboTerm="SBO:0000185" id="MAR10971" name="Transport of ValHisAsn, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10971" sboTerm="SBO:0000185" id="R_MAR10971" name="Transport of ValHisAsn, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -444554,7 +443423,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10971">
+            <rdf:Description rdf:about="#R_MAR10971">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/VALHISASNt"/>
@@ -444565,12 +443434,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM04063e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04063e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM04063c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04063c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -444579,7 +443448,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10972" sboTerm="SBO:0000185" id="MAR10972" name="Transport of ValLeuPhe, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10972" sboTerm="SBO:0000185" id="R_MAR10972" name="Transport of ValLeuPhe, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -444587,7 +443456,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10972">
+            <rdf:Description rdf:about="#R_MAR10972">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/VALLEUPHEt"/>
@@ -444598,12 +443467,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM04064e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04064e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM04064c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04064c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -444612,7 +443481,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10973" sboTerm="SBO:0000185" id="MAR10973" name="Transport of ValLystyr, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10973" sboTerm="SBO:0000185" id="R_MAR10973" name="Transport of ValLystyr, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -444620,7 +443489,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10973">
+            <rdf:Description rdf:about="#R_MAR10973">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/VALLYSTYRt"/>
@@ -444631,12 +443500,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM04065e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04065e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM04065c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04065c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -444645,7 +443514,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10974" sboTerm="SBO:0000185" id="MAR10974" name="Transport of ValPheArg, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10974" sboTerm="SBO:0000185" id="R_MAR10974" name="Transport of ValPheArg, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -444653,7 +443522,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10974">
+            <rdf:Description rdf:about="#R_MAR10974">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/VALPHEARGt"/>
@@ -444664,12 +443533,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM04066e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04066e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM04066c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04066c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -444678,7 +443547,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10975" sboTerm="SBO:0000185" id="MAR10975" name="Transport of ValProTrp, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10975" sboTerm="SBO:0000185" id="R_MAR10975" name="Transport of ValProTrp, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -444686,7 +443555,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10975">
+            <rdf:Description rdf:about="#R_MAR10975">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/VALPROTRPt"/>
@@ -444697,12 +443566,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM04067e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04067e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM04067c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04067c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -444711,7 +443580,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10976" sboTerm="SBO:0000185" id="MAR10976" name="Transport of ValSerArg, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10976" sboTerm="SBO:0000185" id="R_MAR10976" name="Transport of ValSerArg, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -444719,7 +443588,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10976">
+            <rdf:Description rdf:about="#R_MAR10976">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/VALSERARGt"/>
@@ -444730,12 +443599,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM04068e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04068e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM04068c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04068c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -444744,7 +443613,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10977" sboTerm="SBO:0000185" id="MAR10977" name="Transport of ValTrpPhe, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10977" sboTerm="SBO:0000185" id="R_MAR10977" name="Transport of ValTrpPhe, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -444752,7 +443621,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10977">
+            <rdf:Description rdf:about="#R_MAR10977">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/VALTRPPHEt"/>
@@ -444763,12 +443632,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM04069e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04069e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM04069c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04069c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -444777,7 +443646,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10978" sboTerm="SBO:0000185" id="MAR10978" name="Transport of ValTrpVal, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10978" sboTerm="SBO:0000185" id="R_MAR10978" name="Transport of ValTrpVal, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -444785,7 +443654,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10978">
+            <rdf:Description rdf:about="#R_MAR10978">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/VALTRPVALt"/>
@@ -444796,12 +443665,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM04070e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04070e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM04070c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04070c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -444810,7 +443679,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10979" sboTerm="SBO:0000185" id="MAR10979" name="Transport of ValVal, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10979" sboTerm="SBO:0000185" id="R_MAR10979" name="Transport of ValVal, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -444818,7 +443687,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10979">
+            <rdf:Description rdf:about="#R_MAR10979">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/VALVALt"/>
@@ -444829,12 +443698,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM04071e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04071e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM04071c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04071c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -444843,7 +443712,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10980" sboTerm="SBO:0000185" id="MAR10980" name="Transport of TrpGlyAsp, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10980" sboTerm="SBO:0000185" id="R_MAR10980" name="Transport of TrpGlyAsp, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -444851,7 +443720,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10980">
+            <rdf:Description rdf:about="#R_MAR10980">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/TRPGLYASPt"/>
@@ -444862,12 +443731,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM04016e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04016e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM04016c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04016c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -444876,7 +443745,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10981" sboTerm="SBO:0000176" id="MAR10981" name="Metabolism (Formation/Degradation) of AlaArgCys" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10981" sboTerm="SBO:0000176" id="R_MAR10981" name="Metabolism (Formation/Degradation) of AlaArgCys" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -444884,7 +443753,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10981">
+            <rdf:Description rdf:about="#R_MAR10981">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ALAARGCYSr"/>
@@ -444895,16 +443764,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03411c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03411c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01307c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01365c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01628c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01307c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01365c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01628c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10982" sboTerm="SBO:0000176" id="MAR10982" name="Metabolism (Formation/Degradation) of AlaArgGly" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10982" sboTerm="SBO:0000176" id="R_MAR10982" name="Metabolism (Formation/Degradation) of AlaArgGly" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -444912,7 +443781,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10982">
+            <rdf:Description rdf:about="#R_MAR10982">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ALAARGGLYr"/>
@@ -444923,16 +443792,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03412c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03412c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01307c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01365c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01986c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01307c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01365c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10983" sboTerm="SBO:0000176" id="MAR10983" name="Metabolism (Formation/Degradation) of AlaAsnLeu" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10983" sboTerm="SBO:0000176" id="R_MAR10983" name="Metabolism (Formation/Degradation) of AlaAsnLeu" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -444940,7 +443809,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10983">
+            <rdf:Description rdf:about="#R_MAR10983">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ALAASNLEUr"/>
@@ -444951,16 +443820,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03413c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03413c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01307c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01369c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02360c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01307c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01369c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02360c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10984" sboTerm="SBO:0000176" id="MAR10984" name="Metabolism (Formation/Degradation) of AlaGlyLys" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10984" sboTerm="SBO:0000176" id="R_MAR10984" name="Metabolism (Formation/Degradation) of AlaGlyLys" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -444968,7 +443837,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10984">
+            <rdf:Description rdf:about="#R_MAR10984">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ALAGLYLYSr"/>
@@ -444979,16 +443848,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03414c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03414c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01307c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01986c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02426c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01307c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02426c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10985" sboTerm="SBO:0000176" id="MAR10985" name="Metabolism (Formation/Degradation) of AlaHisAla" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10985" sboTerm="SBO:0000176" id="R_MAR10985" name="Metabolism (Formation/Degradation) of AlaHisAla" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -444996,7 +443865,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10985">
+            <rdf:Description rdf:about="#R_MAR10985">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ALAHISALAr"/>
@@ -445007,15 +443876,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03415c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03415c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01307c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02125c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01307c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02125c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10986" sboTerm="SBO:0000176" id="MAR10986" name="Metabolism (Formation/Degradation) of AlaLysThr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10986" sboTerm="SBO:0000176" id="R_MAR10986" name="Metabolism (Formation/Degradation) of AlaLysThr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -445023,7 +443892,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10986">
+            <rdf:Description rdf:about="#R_MAR10986">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ALALYSTHRr"/>
@@ -445034,16 +443903,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03416c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03416c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01307c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02426c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02993c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01307c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02426c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02993c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10987" sboTerm="SBO:0000176" id="MAR10987" name="Metabolism (Formation/Degradation) of ArgAlaAla" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10987" sboTerm="SBO:0000176" id="R_MAR10987" name="Metabolism (Formation/Degradation) of ArgAlaAla" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -445051,7 +443920,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10987">
+            <rdf:Description rdf:about="#R_MAR10987">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ARGALAALAr"/>
@@ -445063,15 +443932,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01365c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03164c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01365c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03164c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03435c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03435c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10988" sboTerm="SBO:0000176" id="MAR10988" name="Metabolism (Formation/Degradation) of ArgAlaPhe" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10988" sboTerm="SBO:0000176" id="R_MAR10988" name="Metabolism (Formation/Degradation) of ArgAlaPhe" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -445079,7 +443948,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10988">
+            <rdf:Description rdf:about="#R_MAR10988">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ARGALAPHEr"/>
@@ -445090,16 +443959,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03436c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03436c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01307c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01365c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02724c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01307c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01365c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02724c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10989" sboTerm="SBO:0000176" id="MAR10989" name="Metabolism (Formation/Degradation) of ArgAlaThr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10989" sboTerm="SBO:0000176" id="R_MAR10989" name="Metabolism (Formation/Degradation) of ArgAlaThr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -445107,7 +443976,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10989">
+            <rdf:Description rdf:about="#R_MAR10989">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ARGALATHRr"/>
@@ -445118,16 +443987,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03437c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03437c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01307c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01365c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02993c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01307c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01365c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02993c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10990" sboTerm="SBO:0000176" id="MAR10990" name="Metabolism (Formation/Degradation) of ArgArg" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10990" sboTerm="SBO:0000176" id="R_MAR10990" name="Metabolism (Formation/Degradation) of ArgArg" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -445135,7 +444004,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10990">
+            <rdf:Description rdf:about="#R_MAR10990">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ARGARGr"/>
@@ -445146,14 +444015,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03438c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03438c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01365c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01365c" stoichiometry="2" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10991" sboTerm="SBO:0000176" id="MAR10991" name="Metabolism (Formation/Degradation) of ArgArgLys" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10991" sboTerm="SBO:0000176" id="R_MAR10991" name="Metabolism (Formation/Degradation) of ArgArgLys" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -445161,7 +444030,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10991">
+            <rdf:Description rdf:about="#R_MAR10991">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ARGARGLYSr"/>
@@ -445172,15 +444041,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03439c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03439c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01365c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02426c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01365c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02426c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10992" sboTerm="SBO:0000176" id="MAR10992" name="Metabolism (Formation/Degradation) of ArgArgMet" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10992" sboTerm="SBO:0000176" id="R_MAR10992" name="Metabolism (Formation/Degradation) of ArgArgMet" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -445188,7 +444057,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10992">
+            <rdf:Description rdf:about="#R_MAR10992">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ARGARGMETr"/>
@@ -445199,15 +444068,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03440c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03440c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01365c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02471c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01365c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02471c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10993" sboTerm="SBO:0000176" id="MAR10993" name="Metabolism (Formation/Degradation) of ArgCysGly" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10993" sboTerm="SBO:0000176" id="R_MAR10993" name="Metabolism (Formation/Degradation) of ArgCysGly" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -445215,7 +444084,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10993">
+            <rdf:Description rdf:about="#R_MAR10993">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ARGCYSGLYr"/>
@@ -445226,16 +444095,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03441c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03441c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01365c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01628c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01986c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01365c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01628c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10994" sboTerm="SBO:0000176" id="MAR10994" name="Metabolism (Formation/Degradation) of ArgCysSer" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10994" sboTerm="SBO:0000176" id="R_MAR10994" name="Metabolism (Formation/Degradation) of ArgCysSer" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -445243,7 +444112,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10994">
+            <rdf:Description rdf:about="#R_MAR10994">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ARGCYSSERr"/>
@@ -445254,16 +444123,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03442c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03442c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01365c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01628c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02896c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01365c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01628c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02896c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10995" sboTerm="SBO:0000176" id="MAR10995" name="Metabolism (Formation/Degradation) of ArgGluGlu" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10995" sboTerm="SBO:0000176" id="R_MAR10995" name="Metabolism (Formation/Degradation) of ArgGluGlu" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -445271,7 +444140,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10995">
+            <rdf:Description rdf:about="#R_MAR10995">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ARGGLUGLUr"/>
@@ -445282,15 +444151,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03443c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03443c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01365c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01974c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01365c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01974c" stoichiometry="2" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10996" sboTerm="SBO:0000176" id="MAR10996" name="Metabolism (Formation/Degradation) of ArgGluPro" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10996" sboTerm="SBO:0000176" id="R_MAR10996" name="Metabolism (Formation/Degradation) of ArgGluPro" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -445298,7 +444167,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10996">
+            <rdf:Description rdf:about="#R_MAR10996">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ARGGLUPROr"/>
@@ -445309,16 +444178,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03444c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03444c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01365c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01974c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02770c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01365c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01974c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02770c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10997" sboTerm="SBO:0000176" id="MAR10997" name="Metabolism (Formation/Degradation) of ArgGlyGly" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10997" sboTerm="SBO:0000176" id="R_MAR10997" name="Metabolism (Formation/Degradation) of ArgGlyGly" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -445326,7 +444195,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10997">
+            <rdf:Description rdf:about="#R_MAR10997">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ARGGLYGLYr"/>
@@ -445337,15 +444206,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01365c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03621c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01365c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03621c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03445c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03445c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10998" sboTerm="SBO:0000176" id="MAR10998" name="Metabolism (Formation/Degradation) of ArgHisThr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10998" sboTerm="SBO:0000176" id="R_MAR10998" name="Metabolism (Formation/Degradation) of ArgHisThr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -445353,7 +444222,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10998">
+            <rdf:Description rdf:about="#R_MAR10998">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ARGHISTHRr"/>
@@ -445364,16 +444233,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03446c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03446c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01365c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02125c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02993c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01365c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02125c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02993c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10999" sboTerm="SBO:0000176" id="MAR10999" name="Metabolism (Formation/Degradation) of ArgLeuPhe" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10999" sboTerm="SBO:0000176" id="R_MAR10999" name="Metabolism (Formation/Degradation) of ArgLeuPhe" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -445381,7 +444250,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10999">
+            <rdf:Description rdf:about="#R_MAR10999">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ARGLEUPHEr"/>
@@ -445392,16 +444261,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03447c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03447c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01365c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02360c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02724c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01365c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02360c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02724c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11000" sboTerm="SBO:0000176" id="MAR11000" name="Metabolism (Formation/Degradation) of ArgLysAsp" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11000" sboTerm="SBO:0000176" id="R_MAR11000" name="Metabolism (Formation/Degradation) of ArgLysAsp" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -445409,7 +444278,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11000">
+            <rdf:Description rdf:about="#R_MAR11000">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ARGLYSASPr"/>
@@ -445420,16 +444289,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03448c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03448c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01365c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01370c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02426c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01365c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01370c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02426c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11001" sboTerm="SBO:0000176" id="MAR11001" name="Metabolism (Formation/Degradation) of ArgPheArg" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11001" sboTerm="SBO:0000176" id="R_MAR11001" name="Metabolism (Formation/Degradation) of ArgPheArg" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -445437,7 +444306,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11001">
+            <rdf:Description rdf:about="#R_MAR11001">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ARGPHEARGr"/>
@@ -445448,15 +444317,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03449c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03449c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01365c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02724c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01365c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02724c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11002" sboTerm="SBO:0000176" id="MAR11002" name="Metabolism (Formation/Degradation) of ArgProMet" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11002" sboTerm="SBO:0000176" id="R_MAR11002" name="Metabolism (Formation/Degradation) of ArgProMet" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -445464,7 +444333,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11002">
+            <rdf:Description rdf:about="#R_MAR11002">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ARGPROMETr"/>
@@ -445475,16 +444344,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03450c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03450c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01365c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02471c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02770c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01365c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02471c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02770c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11003" sboTerm="SBO:0000176" id="MAR11003" name="Metabolism (Formation/Degradation) of ArgProThr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11003" sboTerm="SBO:0000176" id="R_MAR11003" name="Metabolism (Formation/Degradation) of ArgProThr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -445492,7 +444361,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11003">
+            <rdf:Description rdf:about="#R_MAR11003">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ARGPROTHRr"/>
@@ -445503,16 +444372,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03451c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03451c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01365c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02770c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02993c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01365c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02770c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02993c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11004" sboTerm="SBO:0000176" id="MAR11004" name="Metabolism (Formation/Degradation) of ArgSerSer" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11004" sboTerm="SBO:0000176" id="R_MAR11004" name="Metabolism (Formation/Degradation) of ArgSerSer" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -445520,7 +444389,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11004">
+            <rdf:Description rdf:about="#R_MAR11004">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ARGSERSERr"/>
@@ -445531,15 +444400,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03452c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03452c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01365c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02896c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01365c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02896c" stoichiometry="2" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11005" sboTerm="SBO:0000176" id="MAR11005" name="Metabolism (Formation/Degradation) of ArgtyrVal" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11005" sboTerm="SBO:0000176" id="R_MAR11005" name="Metabolism (Formation/Degradation) of ArgtyrVal" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -445547,7 +444416,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11005">
+            <rdf:Description rdf:about="#R_MAR11005">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ARGTYRVALr"/>
@@ -445558,16 +444427,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03453c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03453c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01365c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03101c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03135c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01365c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03101c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03135c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11006" sboTerm="SBO:0000176" id="MAR11006" name="Metabolism (Formation/Degradation) of ArgValCys" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11006" sboTerm="SBO:0000176" id="R_MAR11006" name="Metabolism (Formation/Degradation) of ArgValCys" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -445575,7 +444444,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11006">
+            <rdf:Description rdf:about="#R_MAR11006">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ARGVALCYSr"/>
@@ -445586,16 +444455,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03454c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03454c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01365c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01628c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03135c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01365c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01628c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03135c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11007" sboTerm="SBO:0000176" id="MAR11007" name="Metabolism (Formation/Degradation) of ArgValTrp" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11007" sboTerm="SBO:0000176" id="R_MAR11007" name="Metabolism (Formation/Degradation) of ArgValTrp" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -445603,7 +444472,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11007">
+            <rdf:Description rdf:about="#R_MAR11007">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ARGVALTRPr"/>
@@ -445614,16 +444483,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03455c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03455c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01365c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03089c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03135c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01365c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03089c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03135c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11008" sboTerm="SBO:0000176" id="MAR11008" name="Metabolism (Formation/Degradation) of AsnAsnArg" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11008" sboTerm="SBO:0000176" id="R_MAR11008" name="Metabolism (Formation/Degradation) of AsnAsnArg" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -445631,7 +444500,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11008">
+            <rdf:Description rdf:about="#R_MAR11008">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ASNASNARGr"/>
@@ -445642,15 +444511,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03456c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03456c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01365c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01369c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01365c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01369c" stoichiometry="2" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11009" sboTerm="SBO:0000176" id="MAR11009" name="Metabolism (Formation/Degradation) of AsnCysCys" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11009" sboTerm="SBO:0000176" id="R_MAR11009" name="Metabolism (Formation/Degradation) of AsnCysCys" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -445658,7 +444527,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11009">
+            <rdf:Description rdf:about="#R_MAR11009">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ASNCYSCYSr"/>
@@ -445669,15 +444538,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03457c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03457c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01369c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01628c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01369c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01628c" stoichiometry="2" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11010" sboTerm="SBO:0000176" id="MAR11010" name="Metabolism (Formation/Degradation) of AsnMetPro" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11010" sboTerm="SBO:0000176" id="R_MAR11010" name="Metabolism (Formation/Degradation) of AsnMetPro" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -445685,7 +444554,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11010">
+            <rdf:Description rdf:about="#R_MAR11010">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ASNMETPROr"/>
@@ -445696,16 +444565,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03458c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03458c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01369c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02471c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02770c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01369c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02471c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02770c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11011" sboTerm="SBO:0000176" id="MAR11011" name="Metabolism (Formation/Degradation) of AsnPheAsp" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11011" sboTerm="SBO:0000176" id="R_MAR11011" name="Metabolism (Formation/Degradation) of AsnPheAsp" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -445713,7 +444582,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11011">
+            <rdf:Description rdf:about="#R_MAR11011">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ASNPHEASPr"/>
@@ -445724,16 +444593,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03459c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03459c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01369c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01370c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02724c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01369c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01370c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02724c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11012" sboTerm="SBO:0000176" id="MAR11012" name="Metabolism (Formation/Degradation) of AsnPheCys" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11012" sboTerm="SBO:0000176" id="R_MAR11012" name="Metabolism (Formation/Degradation) of AsnPheCys" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -445741,7 +444610,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11012">
+            <rdf:Description rdf:about="#R_MAR11012">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ASNPHECYSr"/>
@@ -445752,16 +444621,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03460c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03460c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01369c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01628c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02724c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01369c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01628c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02724c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11013" sboTerm="SBO:0000176" id="MAR11013" name="Metabolism (Formation/Degradation) of AsntyrGly" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11013" sboTerm="SBO:0000176" id="R_MAR11013" name="Metabolism (Formation/Degradation) of AsntyrGly" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -445769,7 +444638,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11013">
+            <rdf:Description rdf:about="#R_MAR11013">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ASNTYRGLYr"/>
@@ -445780,16 +444649,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03461c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03461c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01369c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01986c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03101c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01369c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03101c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11014" sboTerm="SBO:0000176" id="MAR11014" name="Metabolism (Formation/Degradation) of AsntyrPhe" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11014" sboTerm="SBO:0000176" id="R_MAR11014" name="Metabolism (Formation/Degradation) of AsntyrPhe" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -445797,7 +444666,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11014">
+            <rdf:Description rdf:about="#R_MAR11014">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ASNTYRPHEr"/>
@@ -445808,16 +444677,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03462c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03462c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01369c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02724c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03101c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01369c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02724c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03101c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11015" sboTerm="SBO:0000176" id="MAR11015" name="Metabolism (Formation/Degradation) of AsntyrThr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11015" sboTerm="SBO:0000176" id="R_MAR11015" name="Metabolism (Formation/Degradation) of AsntyrThr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -445825,7 +444694,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11015">
+            <rdf:Description rdf:about="#R_MAR11015">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ASNTYRTHRr"/>
@@ -445836,16 +444705,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03463c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03463c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01369c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02993c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03101c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01369c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02993c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03101c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11016" sboTerm="SBO:0000176" id="MAR11016" name="Metabolism (Formation/Degradation) of AspAlaArg" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11016" sboTerm="SBO:0000176" id="R_MAR11016" name="Metabolism (Formation/Degradation) of AspAlaArg" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -445853,7 +444722,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11016">
+            <rdf:Description rdf:about="#R_MAR11016">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ASPALAARGr"/>
@@ -445864,16 +444733,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03464c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03464c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01307c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01365c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01370c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01307c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01365c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01370c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11017" sboTerm="SBO:0000176" id="MAR11017" name="Metabolism (Formation/Degradation) of AspAsnGlu" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11017" sboTerm="SBO:0000176" id="R_MAR11017" name="Metabolism (Formation/Degradation) of AspAsnGlu" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -445881,7 +444750,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11017">
+            <rdf:Description rdf:about="#R_MAR11017">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ASPASNGLUr"/>
@@ -445892,16 +444761,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03465c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03465c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01369c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01370c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01974c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01369c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01370c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01974c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11018" sboTerm="SBO:0000176" id="MAR11018" name="Metabolism (Formation/Degradation) of AspGlu" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11018" sboTerm="SBO:0000176" id="R_MAR11018" name="Metabolism (Formation/Degradation) of AspGlu" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -445909,7 +444778,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11018">
+            <rdf:Description rdf:about="#R_MAR11018">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ASPGLUr"/>
@@ -445920,15 +444789,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03466c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03466c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01370c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01974c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01370c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01974c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11019" sboTerm="SBO:0000176" id="MAR11019" name="Metabolism (Formation/Degradation) of AspGluPro" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11019" sboTerm="SBO:0000176" id="R_MAR11019" name="Metabolism (Formation/Degradation) of AspGluPro" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -445936,7 +444805,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11019">
+            <rdf:Description rdf:about="#R_MAR11019">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ASPGLUPROr"/>
@@ -445947,16 +444816,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03467c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03467c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01370c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01974c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02770c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01370c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01974c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02770c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11020" sboTerm="SBO:0000176" id="MAR11020" name="Metabolism (Formation/Degradation) of AspGluTrp" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11020" sboTerm="SBO:0000176" id="R_MAR11020" name="Metabolism (Formation/Degradation) of AspGluTrp" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -445964,7 +444833,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11020">
+            <rdf:Description rdf:about="#R_MAR11020">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ASPGLUTRPr"/>
@@ -445975,16 +444844,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03468c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03468c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01370c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01974c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03089c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01370c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01974c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03089c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11021" sboTerm="SBO:0000176" id="MAR11021" name="Metabolism (Formation/Degradation) of AspHisCys" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11021" sboTerm="SBO:0000176" id="R_MAR11021" name="Metabolism (Formation/Degradation) of AspHisCys" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -445992,7 +444861,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11021">
+            <rdf:Description rdf:about="#R_MAR11021">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ASPHISCYSr"/>
@@ -446003,16 +444872,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03469c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03469c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01370c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01628c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02125c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01370c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01628c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02125c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11022" sboTerm="SBO:0000176" id="MAR11022" name="Metabolism (Formation/Degradation) of AspHisPro" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11022" sboTerm="SBO:0000176" id="R_MAR11022" name="Metabolism (Formation/Degradation) of AspHisPro" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -446020,7 +444889,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11022">
+            <rdf:Description rdf:about="#R_MAR11022">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ASPHISPROr"/>
@@ -446031,16 +444900,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03470c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03470c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01370c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02125c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02770c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01370c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02125c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02770c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11023" sboTerm="SBO:0000176" id="MAR11023" name="Metabolism (Formation/Degradation) of AspLysGlu" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11023" sboTerm="SBO:0000176" id="R_MAR11023" name="Metabolism (Formation/Degradation) of AspLysGlu" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -446048,7 +444917,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11023">
+            <rdf:Description rdf:about="#R_MAR11023">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ASPLYSGLUr"/>
@@ -446059,16 +444928,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03471c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03471c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01370c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01974c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02426c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01370c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01974c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02426c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11024" sboTerm="SBO:0000176" id="MAR11024" name="Metabolism (Formation/Degradation) of AspLysHis" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11024" sboTerm="SBO:0000176" id="R_MAR11024" name="Metabolism (Formation/Degradation) of AspLysHis" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -446076,7 +444945,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11024">
+            <rdf:Description rdf:about="#R_MAR11024">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ASPLYSHISr"/>
@@ -446087,16 +444956,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03472c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03472c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01370c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02125c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02426c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01370c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02125c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02426c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11025" sboTerm="SBO:0000176" id="MAR11025" name="Metabolism (Formation/Degradation) of AspMetAsp" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11025" sboTerm="SBO:0000176" id="R_MAR11025" name="Metabolism (Formation/Degradation) of AspMetAsp" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -446104,7 +444973,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11025">
+            <rdf:Description rdf:about="#R_MAR11025">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ASPMETASPr"/>
@@ -446115,15 +444984,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03473c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03473c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01370c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02471c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01370c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02471c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11026" sboTerm="SBO:0000176" id="MAR11026" name="Metabolism (Formation/Degradation) of AspProLys" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11026" sboTerm="SBO:0000176" id="R_MAR11026" name="Metabolism (Formation/Degradation) of AspProLys" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -446131,7 +445000,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11026">
+            <rdf:Description rdf:about="#R_MAR11026">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ASPPROLYSr"/>
@@ -446142,16 +445011,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03474c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03474c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01370c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02426c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02770c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01370c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02426c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02770c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11027" sboTerm="SBO:0000176" id="MAR11027" name="Metabolism (Formation/Degradation) of AspValAsn" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11027" sboTerm="SBO:0000176" id="R_MAR11027" name="Metabolism (Formation/Degradation) of AspValAsn" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -446159,7 +445028,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11027">
+            <rdf:Description rdf:about="#R_MAR11027">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ASPVALASNr"/>
@@ -446170,16 +445039,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03475c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03475c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01369c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01370c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03135c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01369c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01370c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03135c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11028" sboTerm="SBO:0000176" id="MAR11028" name="Metabolism (Formation/Degradation) of CysAsnMet" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11028" sboTerm="SBO:0000176" id="R_MAR11028" name="Metabolism (Formation/Degradation) of CysAsnMet" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -446187,7 +445056,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11028">
+            <rdf:Description rdf:about="#R_MAR11028">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CYSASNMETr"/>
@@ -446198,16 +445067,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03527c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03527c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01369c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01628c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02471c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01369c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01628c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02471c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11029" sboTerm="SBO:0000176" id="MAR11029" name="Metabolism (Formation/Degradation) of CysAspPhe" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11029" sboTerm="SBO:0000176" id="R_MAR11029" name="Metabolism (Formation/Degradation) of CysAspPhe" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -446215,7 +445084,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11029">
+            <rdf:Description rdf:about="#R_MAR11029">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CYSASPPHEr"/>
@@ -446226,16 +445095,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03528c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03528c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01370c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01628c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02724c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01370c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01628c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02724c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11030" sboTerm="SBO:0000176" id="MAR11030" name="Metabolism (Formation/Degradation) of CysCys" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11030" sboTerm="SBO:0000176" id="R_MAR11030" name="Metabolism (Formation/Degradation) of CysCys" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -446243,7 +445112,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11030">
+            <rdf:Description rdf:about="#R_MAR11030">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CYSCYSr"/>
@@ -446254,14 +445123,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03529c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03529c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01628c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01628c" stoichiometry="2" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11031" sboTerm="SBO:0000176" id="MAR11031" name="Metabolism (Formation/Degradation) of CysGlnMet" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11031" sboTerm="SBO:0000176" id="R_MAR11031" name="Metabolism (Formation/Degradation) of CysGlnMet" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -446269,7 +445138,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11031">
+            <rdf:Description rdf:about="#R_MAR11031">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CYSGLNMETr"/>
@@ -446280,16 +445149,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03530c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03530c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01628c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01975c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02471c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01628c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01975c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02471c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11032" sboTerm="SBO:0000176" id="MAR11032" name="Metabolism (Formation/Degradation) of CysGluHis" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11032" sboTerm="SBO:0000176" id="R_MAR11032" name="Metabolism (Formation/Degradation) of CysGluHis" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -446297,7 +445166,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11032">
+            <rdf:Description rdf:about="#R_MAR11032">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CYSGLUHISr"/>
@@ -446308,16 +445177,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03531c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03531c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01628c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01974c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02125c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01628c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01974c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02125c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11033" sboTerm="SBO:0000176" id="MAR11033" name="Metabolism (Formation/Degradation) of CysGluTrp" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11033" sboTerm="SBO:0000176" id="R_MAR11033" name="Metabolism (Formation/Degradation) of CysGluTrp" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -446325,7 +445194,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11033">
+            <rdf:Description rdf:about="#R_MAR11033">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CYSGLUTRPr"/>
@@ -446336,16 +445205,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03532c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03532c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01628c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01974c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03089c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01628c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01974c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03089c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11034" sboTerm="SBO:0000176" id="MAR11034" name="Metabolism (Formation/Degradation) of CysLeuThr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11034" sboTerm="SBO:0000176" id="R_MAR11034" name="Metabolism (Formation/Degradation) of CysLeuThr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -446353,7 +445222,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11034">
+            <rdf:Description rdf:about="#R_MAR11034">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CYSLEUTHRr"/>
@@ -446364,16 +445233,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03533c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03533c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01628c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02360c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02993c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01628c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02360c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02993c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11035" sboTerm="SBO:0000176" id="MAR11035" name="Metabolism (Formation/Degradation) of CysSerMet" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11035" sboTerm="SBO:0000176" id="R_MAR11035" name="Metabolism (Formation/Degradation) of CysSerMet" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -446381,7 +445250,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11035">
+            <rdf:Description rdf:about="#R_MAR11035">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CYSSERMETr"/>
@@ -446392,16 +445261,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03534c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03534c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01628c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02471c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02896c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01628c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02471c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02896c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11036" sboTerm="SBO:0000176" id="MAR11036" name="Metabolism (Formation/Degradation) of CystyrAsn" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11036" sboTerm="SBO:0000176" id="R_MAR11036" name="Metabolism (Formation/Degradation) of CystyrAsn" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -446409,7 +445278,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11036">
+            <rdf:Description rdf:about="#R_MAR11036">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CYSTYRASNr"/>
@@ -446420,16 +445289,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03535c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03535c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01369c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01628c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03101c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01369c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01628c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03101c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11037" sboTerm="SBO:0000176" id="MAR11037" name="Metabolism (Formation/Degradation) of GlnAsnGln" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11037" sboTerm="SBO:0000176" id="R_MAR11037" name="Metabolism (Formation/Degradation) of GlnAsnGln" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -446437,7 +445306,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11037">
+            <rdf:Description rdf:about="#R_MAR11037">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GLNASNGLNr"/>
@@ -446448,15 +445317,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03596c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03596c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01369c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01975c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01369c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01975c" stoichiometry="2" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11038" sboTerm="SBO:0000176" id="MAR11038" name="Metabolism (Formation/Degradation) of GlnHisHis" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11038" sboTerm="SBO:0000176" id="R_MAR11038" name="Metabolism (Formation/Degradation) of GlnHisHis" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -446464,7 +445333,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11038">
+            <rdf:Description rdf:about="#R_MAR11038">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GLNHISHISr"/>
@@ -446475,15 +445344,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03597c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01975c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02125c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01975c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02125c" stoichiometry="2" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11039" sboTerm="SBO:0000176" id="MAR11039" name="Metabolism (Formation/Degradation) of GlnHisLys" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11039" sboTerm="SBO:0000176" id="R_MAR11039" name="Metabolism (Formation/Degradation) of GlnHisLys" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -446491,7 +445360,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11039">
+            <rdf:Description rdf:about="#R_MAR11039">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GLNHISLYSr"/>
@@ -446502,16 +445371,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03598c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03598c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01975c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02125c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02426c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01975c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02125c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02426c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11040" sboTerm="SBO:0000176" id="MAR11040" name="Metabolism (Formation/Degradation) of GlnLysLys" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11040" sboTerm="SBO:0000176" id="R_MAR11040" name="Metabolism (Formation/Degradation) of GlnLysLys" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -446519,7 +445388,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11040">
+            <rdf:Description rdf:about="#R_MAR11040">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GLNLYSLYSr"/>
@@ -446530,15 +445399,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03599c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03599c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01975c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02426c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01975c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02426c" stoichiometry="2" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11041" sboTerm="SBO:0000176" id="MAR11041" name="Metabolism (Formation/Degradation) of GlnLysTrp" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11041" sboTerm="SBO:0000176" id="R_MAR11041" name="Metabolism (Formation/Degradation) of GlnLysTrp" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -446546,7 +445415,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11041">
+            <rdf:Description rdf:about="#R_MAR11041">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GLNLYSTRPr"/>
@@ -446557,16 +445426,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03600c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03600c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01975c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02426c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03089c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01975c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02426c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03089c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11042" sboTerm="SBO:0000176" id="MAR11042" name="Metabolism (Formation/Degradation) of GlnProGlu" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11042" sboTerm="SBO:0000176" id="R_MAR11042" name="Metabolism (Formation/Degradation) of GlnProGlu" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -446574,7 +445443,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11042">
+            <rdf:Description rdf:about="#R_MAR11042">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GLNPROGLUr"/>
@@ -446585,16 +445454,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03601c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03601c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01974c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01975c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02770c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01974c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01975c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02770c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11043" sboTerm="SBO:0000176" id="MAR11043" name="Metabolism (Formation/Degradation) of GlnTrpGlu" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11043" sboTerm="SBO:0000176" id="R_MAR11043" name="Metabolism (Formation/Degradation) of GlnTrpGlu" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -446602,7 +445471,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11043">
+            <rdf:Description rdf:about="#R_MAR11043">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GLNTRPGLUr"/>
@@ -446613,16 +445482,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03602c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03602c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01974c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01975c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03089c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01974c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01975c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03089c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11044" sboTerm="SBO:0000176" id="MAR11044" name="Metabolism (Formation/Degradation) of GlntyrLeu" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11044" sboTerm="SBO:0000176" id="R_MAR11044" name="Metabolism (Formation/Degradation) of GlntyrLeu" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -446630,7 +445499,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11044">
+            <rdf:Description rdf:about="#R_MAR11044">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GLNTYRLEUr"/>
@@ -446641,16 +445510,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03603c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03603c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01975c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02360c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03101c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01975c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02360c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03101c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11045" sboTerm="SBO:0000176" id="MAR11045" name="Metabolism (Formation/Degradation) of GluArgLeu" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11045" sboTerm="SBO:0000176" id="R_MAR11045" name="Metabolism (Formation/Degradation) of GluArgLeu" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -446658,7 +445527,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11045">
+            <rdf:Description rdf:about="#R_MAR11045">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GLUARGLEUr"/>
@@ -446669,16 +445538,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03606c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03606c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01365c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01974c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02360c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01365c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01974c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02360c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11046" sboTerm="SBO:0000176" id="MAR11046" name="Metabolism (Formation/Degradation) of GluAsnLeu" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11046" sboTerm="SBO:0000176" id="R_MAR11046" name="Metabolism (Formation/Degradation) of GluAsnLeu" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -446686,7 +445555,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11046">
+            <rdf:Description rdf:about="#R_MAR11046">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GLUASNLEUr"/>
@@ -446697,16 +445566,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03607c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03607c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01369c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01974c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02360c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01369c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01974c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02360c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11047" sboTerm="SBO:0000176" id="MAR11047" name="Metabolism (Formation/Degradation) of GluGlu" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11047" sboTerm="SBO:0000176" id="R_MAR11047" name="Metabolism (Formation/Degradation) of GluGlu" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -446714,7 +445583,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11047">
+            <rdf:Description rdf:about="#R_MAR11047">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GLUGLUr"/>
@@ -446725,14 +445594,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03608c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03608c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01974c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01974c" stoichiometry="2" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11048" sboTerm="SBO:0000176" id="MAR11048" name="Metabolism (Formation/Degradation) of GluIleLys" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11048" sboTerm="SBO:0000176" id="R_MAR11048" name="Metabolism (Formation/Degradation) of GluIleLys" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -446740,7 +445609,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11048">
+            <rdf:Description rdf:about="#R_MAR11048">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GLUILELYSr"/>
@@ -446751,16 +445620,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03609c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03609c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01974c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02184c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02426c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01974c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02184c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02426c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11049" sboTerm="SBO:0000176" id="MAR11049" name="Metabolism (Formation/Degradation) of GluLeu" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11049" sboTerm="SBO:0000176" id="R_MAR11049" name="Metabolism (Formation/Degradation) of GluLeu" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -446768,7 +445637,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11049">
+            <rdf:Description rdf:about="#R_MAR11049">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GLULEUr"/>
@@ -446779,15 +445648,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03610c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03610c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01974c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02360c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01974c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02360c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11050" sboTerm="SBO:0000176" id="MAR11050" name="Metabolism (Formation/Degradation) of GluMet" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11050" sboTerm="SBO:0000176" id="R_MAR11050" name="Metabolism (Formation/Degradation) of GluMet" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -446795,7 +445664,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11050">
+            <rdf:Description rdf:about="#R_MAR11050">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GLUMETr"/>
@@ -446806,15 +445675,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03611c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03611c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01974c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02471c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01974c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02471c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11051" sboTerm="SBO:0000176" id="MAR11051" name="Metabolism (Formation/Degradation) of GluMetHis" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11051" sboTerm="SBO:0000176" id="R_MAR11051" name="Metabolism (Formation/Degradation) of GluMetHis" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -446822,7 +445691,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11051">
+            <rdf:Description rdf:about="#R_MAR11051">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GLUMETHISr"/>
@@ -446833,16 +445702,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03612c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03612c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01974c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02125c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02471c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01974c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02125c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02471c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11052" sboTerm="SBO:0000176" id="MAR11052" name="Metabolism (Formation/Degradation) of GluThr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11052" sboTerm="SBO:0000176" id="R_MAR11052" name="Metabolism (Formation/Degradation) of GluThr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -446850,7 +445719,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11052">
+            <rdf:Description rdf:about="#R_MAR11052">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GLUTHRr"/>
@@ -446861,15 +445730,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03616c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03616c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01974c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02993c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01974c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02993c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11053" sboTerm="SBO:0000176" id="MAR11053" name="Metabolism (Formation/Degradation) of GluThrLys" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11053" sboTerm="SBO:0000176" id="R_MAR11053" name="Metabolism (Formation/Degradation) of GluThrLys" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -446877,7 +445746,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11053">
+            <rdf:Description rdf:about="#R_MAR11053">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GLUTHRLYSr"/>
@@ -446888,16 +445757,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03617c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03617c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01974c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02426c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02993c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01974c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02426c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02993c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11054" sboTerm="SBO:0000176" id="MAR11054" name="Metabolism (Formation/Degradation) of GluTrpAla" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11054" sboTerm="SBO:0000176" id="R_MAR11054" name="Metabolism (Formation/Degradation) of GluTrpAla" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -446905,7 +445774,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11054">
+            <rdf:Description rdf:about="#R_MAR11054">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GLUTRPALAr"/>
@@ -446916,16 +445785,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03618c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03618c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01307c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01974c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03089c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01307c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01974c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03089c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11055" sboTerm="SBO:0000176" id="MAR11055" name="Metabolism (Formation/Degradation) of GlyHisAsn" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11055" sboTerm="SBO:0000176" id="R_MAR11055" name="Metabolism (Formation/Degradation) of GlyHisAsn" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -446933,7 +445802,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11055">
+            <rdf:Description rdf:about="#R_MAR11055">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GLYHISASNr"/>
@@ -446944,16 +445813,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03624c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03624c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01369c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01986c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02125c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01369c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02125c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11056" sboTerm="SBO:0000176" id="MAR11056" name="Metabolism (Formation/Degradation) of GlyHisLys" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11056" sboTerm="SBO:0000176" id="R_MAR11056" name="Metabolism (Formation/Degradation) of GlyHisLys" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -446961,7 +445830,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11056">
+            <rdf:Description rdf:about="#R_MAR11056">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GLYHISLYSr"/>
@@ -446972,16 +445841,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03625c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03625c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01986c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02125c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02426c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02125c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02426c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11057" sboTerm="SBO:0000176" id="MAR11057" name="Metabolism (Formation/Degradation) of GlyLysCys" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11057" sboTerm="SBO:0000176" id="R_MAR11057" name="Metabolism (Formation/Degradation) of GlyLysCys" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -446989,7 +445858,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11057">
+            <rdf:Description rdf:about="#R_MAR11057">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GLYLYSCYSr"/>
@@ -447000,16 +445869,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03627c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03627c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01628c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01986c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02426c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01628c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02426c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11058" sboTerm="SBO:0000176" id="MAR11058" name="Metabolism (Formation/Degradation) of GlyLysPhe" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11058" sboTerm="SBO:0000176" id="R_MAR11058" name="Metabolism (Formation/Degradation) of GlyLysPhe" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -447017,7 +445886,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11058">
+            <rdf:Description rdf:about="#R_MAR11058">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GLYLYSPHEr"/>
@@ -447028,16 +445897,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03628c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03628c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01986c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02426c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02724c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02426c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02724c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11059" sboTerm="SBO:0000176" id="MAR11059" name="Metabolism (Formation/Degradation) of GlytyrLys" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11059" sboTerm="SBO:0000176" id="R_MAR11059" name="Metabolism (Formation/Degradation) of GlytyrLys" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -447045,7 +445914,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11059">
+            <rdf:Description rdf:about="#R_MAR11059">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GLYTYRLYSr"/>
@@ -447056,16 +445925,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03632c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03632c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01986c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02426c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03101c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02426c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03101c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11060" sboTerm="SBO:0000176" id="MAR11060" name="Metabolism (Formation/Degradation) of GlyValHis" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11060" sboTerm="SBO:0000176" id="R_MAR11060" name="Metabolism (Formation/Degradation) of GlyValHis" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -447073,7 +445942,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11060">
+            <rdf:Description rdf:about="#R_MAR11060">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GLYVALHISr"/>
@@ -447084,16 +445953,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03633c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03633c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01986c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02125c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03135c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02125c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03135c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11061" sboTerm="SBO:0000176" id="MAR11061" name="Metabolism (Formation/Degradation) of HisArgCys" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11061" sboTerm="SBO:0000176" id="R_MAR11061" name="Metabolism (Formation/Degradation) of HisArgCys" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -447101,7 +445970,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11061">
+            <rdf:Description rdf:about="#R_MAR11061">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/HISARGCYSr"/>
@@ -447112,16 +445981,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03662c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03662c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01365c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01628c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02125c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01365c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01628c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02125c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11062" sboTerm="SBO:0000176" id="MAR11062" name="Metabolism (Formation/Degradation) of HisArgSer" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11062" sboTerm="SBO:0000176" id="R_MAR11062" name="Metabolism (Formation/Degradation) of HisArgSer" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -447129,7 +445998,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11062">
+            <rdf:Description rdf:about="#R_MAR11062">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/HISARGSERr"/>
@@ -447140,16 +446009,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03663c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03663c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01365c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02125c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02896c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01365c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02125c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02896c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11063" sboTerm="SBO:0000176" id="MAR11063" name="Metabolism (Formation/Degradation) of HisAsp" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11063" sboTerm="SBO:0000176" id="R_MAR11063" name="Metabolism (Formation/Degradation) of HisAsp" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -447157,7 +446026,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11063">
+            <rdf:Description rdf:about="#R_MAR11063">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/HISASPr"/>
@@ -447168,15 +446037,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03664c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03664c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01370c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02125c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01370c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02125c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11064" sboTerm="SBO:0000176" id="MAR11064" name="Metabolism (Formation/Degradation) of HisCysCys" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11064" sboTerm="SBO:0000176" id="R_MAR11064" name="Metabolism (Formation/Degradation) of HisCysCys" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -447184,7 +446053,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11064">
+            <rdf:Description rdf:about="#R_MAR11064">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/HISCYSCYSr"/>
@@ -447195,15 +446064,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03665c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03665c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01628c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02125c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01628c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02125c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11065" sboTerm="SBO:0000176" id="MAR11065" name="Metabolism (Formation/Degradation) of HisGlnAla" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11065" sboTerm="SBO:0000176" id="R_MAR11065" name="Metabolism (Formation/Degradation) of HisGlnAla" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -447211,7 +446080,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11065">
+            <rdf:Description rdf:about="#R_MAR11065">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/HISGLNALAr"/>
@@ -447222,16 +446091,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03666c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03666c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01307c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01975c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02125c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01307c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01975c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02125c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11066" sboTerm="SBO:0000176" id="MAR11066" name="Metabolism (Formation/Degradation) of HisGlu" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11066" sboTerm="SBO:0000176" id="R_MAR11066" name="Metabolism (Formation/Degradation) of HisGlu" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -447239,7 +446108,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11066">
+            <rdf:Description rdf:about="#R_MAR11066">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/HISGLUr"/>
@@ -447250,15 +446119,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03667c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03667c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01974c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02125c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01974c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02125c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11067" sboTerm="SBO:0000176" id="MAR11067" name="Metabolism (Formation/Degradation) of HisGluGln" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11067" sboTerm="SBO:0000176" id="R_MAR11067" name="Metabolism (Formation/Degradation) of HisGluGln" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -447266,7 +446135,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11067">
+            <rdf:Description rdf:about="#R_MAR11067">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/HISGLUGLNr"/>
@@ -447277,16 +446146,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03668c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03668c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01974c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01975c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02125c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01974c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01975c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02125c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11068" sboTerm="SBO:0000176" id="MAR11068" name="Metabolism (Formation/Degradation) of HisGlyLys" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11068" sboTerm="SBO:0000176" id="R_MAR11068" name="Metabolism (Formation/Degradation) of HisGlyLys" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -447294,7 +446163,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11068">
+            <rdf:Description rdf:about="#R_MAR11068">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/HISGLYLYSr"/>
@@ -447305,16 +446174,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03669c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03669c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01986c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02125c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02426c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02125c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02426c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11069" sboTerm="SBO:0000176" id="MAR11069" name="Metabolism (Formation/Degradation) of HisHisLys" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11069" sboTerm="SBO:0000176" id="R_MAR11069" name="Metabolism (Formation/Degradation) of HisHisLys" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -447322,7 +446191,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11069">
+            <rdf:Description rdf:about="#R_MAR11069">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/HISHISLYSr"/>
@@ -447333,15 +446202,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03670c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03670c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02125c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02426c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02125c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02426c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11070" sboTerm="SBO:0000176" id="MAR11070" name="Metabolism (Formation/Degradation) of HisLysAla" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11070" sboTerm="SBO:0000176" id="R_MAR11070" name="Metabolism (Formation/Degradation) of HisLysAla" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -447349,7 +446218,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11070">
+            <rdf:Description rdf:about="#R_MAR11070">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/HISLYSALAr"/>
@@ -447360,16 +446229,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03671c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03671c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01307c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02125c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02426c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01307c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02125c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02426c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11071" sboTerm="SBO:0000176" id="MAR11071" name="Metabolism (Formation/Degradation) of HisLysGlu" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11071" sboTerm="SBO:0000176" id="R_MAR11071" name="Metabolism (Formation/Degradation) of HisLysGlu" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -447377,7 +446246,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11071">
+            <rdf:Description rdf:about="#R_MAR11071">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/HISLYSGLUr"/>
@@ -447388,16 +446257,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03672c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03672c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01974c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02125c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02426c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01974c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02125c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02426c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11072" sboTerm="SBO:0000176" id="MAR11072" name="Metabolism (Formation/Degradation) of HisLysIle" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11072" sboTerm="SBO:0000176" id="R_MAR11072" name="Metabolism (Formation/Degradation) of HisLysIle" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -447405,7 +446274,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11072">
+            <rdf:Description rdf:about="#R_MAR11072">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/HISLYSILEr"/>
@@ -447416,16 +446285,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03673c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03673c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02125c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02184c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02426c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02125c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02184c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02426c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11073" sboTerm="SBO:0000176" id="MAR11073" name="Metabolism (Formation/Degradation) of HisLysThr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11073" sboTerm="SBO:0000176" id="R_MAR11073" name="Metabolism (Formation/Degradation) of HisLysThr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -447433,7 +446302,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11073">
+            <rdf:Description rdf:about="#R_MAR11073">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/HISLYSTHRr"/>
@@ -447444,16 +446313,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03674c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03674c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02125c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02426c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02993c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02125c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02426c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02993c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11074" sboTerm="SBO:0000176" id="MAR11074" name="Metabolism (Formation/Degradation) of HisLysVal" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11074" sboTerm="SBO:0000176" id="R_MAR11074" name="Metabolism (Formation/Degradation) of HisLysVal" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -447461,7 +446330,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11074">
+            <rdf:Description rdf:about="#R_MAR11074">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/HISLYSVALr"/>
@@ -447472,16 +446341,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03675c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03675c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02125c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02426c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03135c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02125c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02426c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03135c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11075" sboTerm="SBO:0000176" id="MAR11075" name="Metabolism (Formation/Degradation) of HisMet" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11075" sboTerm="SBO:0000176" id="R_MAR11075" name="Metabolism (Formation/Degradation) of HisMet" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -447489,7 +446358,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11075">
+            <rdf:Description rdf:about="#R_MAR11075">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/HISMETr"/>
@@ -447500,15 +446369,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03676c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03676c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02125c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02471c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02125c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02471c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11076" sboTerm="SBO:0000176" id="MAR11076" name="Metabolism (Formation/Degradation) of HisMetGln" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11076" sboTerm="SBO:0000176" id="R_MAR11076" name="Metabolism (Formation/Degradation) of HisMetGln" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -447516,7 +446385,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11076">
+            <rdf:Description rdf:about="#R_MAR11076">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/HISMETGLNr"/>
@@ -447527,16 +446396,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03677c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03677c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01975c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02125c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02471c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01975c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02125c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02471c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11077" sboTerm="SBO:0000176" id="MAR11077" name="Metabolism (Formation/Degradation) of HisPheArg" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11077" sboTerm="SBO:0000176" id="R_MAR11077" name="Metabolism (Formation/Degradation) of HisPheArg" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -447544,7 +446413,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11077">
+            <rdf:Description rdf:about="#R_MAR11077">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/HISPHEARGr"/>
@@ -447555,16 +446424,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03678c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03678c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01365c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02125c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02724c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01365c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02125c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02724c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11078" sboTerm="SBO:0000176" id="MAR11078" name="Metabolism (Formation/Degradation) of HisProLys" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11078" sboTerm="SBO:0000176" id="R_MAR11078" name="Metabolism (Formation/Degradation) of HisProLys" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -447572,7 +446441,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11078">
+            <rdf:Description rdf:about="#R_MAR11078">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/HISPROLYSr"/>
@@ -447583,16 +446452,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03679c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03679c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02125c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02426c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02770c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02125c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02426c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02770c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11079" sboTerm="SBO:0000176" id="MAR11079" name="Metabolism (Formation/Degradation) of HisTrpHis" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11079" sboTerm="SBO:0000176" id="R_MAR11079" name="Metabolism (Formation/Degradation) of HisTrpHis" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -447600,7 +446469,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11079">
+            <rdf:Description rdf:about="#R_MAR11079">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/HISTRPHISr"/>
@@ -447611,15 +446480,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03680c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03680c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02125c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03089c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02125c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03089c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11080" sboTerm="SBO:0000176" id="MAR11080" name="Metabolism (Formation/Degradation) of IleArgIle" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11080" sboTerm="SBO:0000176" id="R_MAR11080" name="Metabolism (Formation/Degradation) of IleArgIle" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -447627,7 +446496,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11080">
+            <rdf:Description rdf:about="#R_MAR11080">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ILEARGILEr"/>
@@ -447638,15 +446507,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03693c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03693c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01365c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02184c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01365c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02184c" stoichiometry="2" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11081" sboTerm="SBO:0000176" id="MAR11081" name="Metabolism (Formation/Degradation) of IleAsnHis" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11081" sboTerm="SBO:0000176" id="R_MAR11081" name="Metabolism (Formation/Degradation) of IleAsnHis" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -447654,7 +446523,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11081">
+            <rdf:Description rdf:about="#R_MAR11081">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ILEASNHISr"/>
@@ -447665,16 +446534,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03694c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03694c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01369c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02125c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02184c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01369c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02125c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02184c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11082" sboTerm="SBO:0000176" id="MAR11082" name="Metabolism (Formation/Degradation) of IleAsp" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11082" sboTerm="SBO:0000176" id="R_MAR11082" name="Metabolism (Formation/Degradation) of IleAsp" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -447682,7 +446551,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11082">
+            <rdf:Description rdf:about="#R_MAR11082">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ILEASPr"/>
@@ -447693,15 +446562,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03695c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03695c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01370c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02184c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01370c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02184c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11083" sboTerm="SBO:0000176" id="MAR11083" name="Metabolism (Formation/Degradation) of IleGlnGlu" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11083" sboTerm="SBO:0000176" id="R_MAR11083" name="Metabolism (Formation/Degradation) of IleGlnGlu" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -447709,7 +446578,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11083">
+            <rdf:Description rdf:about="#R_MAR11083">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ILEGLNGLUr"/>
@@ -447720,16 +446589,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03696c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03696c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01974c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01975c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02184c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01974c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01975c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02184c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11084" sboTerm="SBO:0000176" id="MAR11084" name="Metabolism (Formation/Degradation) of IleGlyArg" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11084" sboTerm="SBO:0000176" id="R_MAR11084" name="Metabolism (Formation/Degradation) of IleGlyArg" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -447737,7 +446606,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11084">
+            <rdf:Description rdf:about="#R_MAR11084">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ILEGLYARGr"/>
@@ -447748,16 +446617,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03697c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03697c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01365c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01986c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02184c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01365c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02184c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11085" sboTerm="SBO:0000176" id="MAR11085" name="Metabolism (Formation/Degradation) of IleProLys" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11085" sboTerm="SBO:0000176" id="R_MAR11085" name="Metabolism (Formation/Degradation) of IleProLys" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -447765,7 +446634,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11085">
+            <rdf:Description rdf:about="#R_MAR11085">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ILEPROLYSr"/>
@@ -447776,16 +446645,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03698c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03698c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02184c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02426c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02770c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02184c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02426c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02770c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11086" sboTerm="SBO:0000176" id="MAR11086" name="Metabolism (Formation/Degradation) of IleSerArg" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11086" sboTerm="SBO:0000176" id="R_MAR11086" name="Metabolism (Formation/Degradation) of IleSerArg" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -447793,7 +446662,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11086">
+            <rdf:Description rdf:about="#R_MAR11086">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ILESERARGr"/>
@@ -447804,16 +446673,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03699c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03699c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01365c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02184c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02896c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01365c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02184c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02896c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11087" sboTerm="SBO:0000176" id="MAR11087" name="Metabolism (Formation/Degradation) of IleTrptyr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11087" sboTerm="SBO:0000176" id="R_MAR11087" name="Metabolism (Formation/Degradation) of IleTrptyr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -447821,7 +446690,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11087">
+            <rdf:Description rdf:about="#R_MAR11087">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ILETRPTYRr"/>
@@ -447832,16 +446701,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03700c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03700c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02184c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03089c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03101c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02184c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03089c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03101c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11088" sboTerm="SBO:0000176" id="MAR11088" name="Metabolism (Formation/Degradation) of LeuAlaArg" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11088" sboTerm="SBO:0000176" id="R_MAR11088" name="Metabolism (Formation/Degradation) of LeuAlaArg" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -447849,7 +446718,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11088">
+            <rdf:Description rdf:about="#R_MAR11088">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/LEUALAARGr"/>
@@ -447860,16 +446729,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03711c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03711c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01307c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01365c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02360c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01307c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01365c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02360c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11089" sboTerm="SBO:0000176" id="MAR11089" name="Metabolism (Formation/Degradation) of LeuAsnAsp" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11089" sboTerm="SBO:0000176" id="R_MAR11089" name="Metabolism (Formation/Degradation) of LeuAsnAsp" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -447877,7 +446746,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11089">
+            <rdf:Description rdf:about="#R_MAR11089">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/LEUASNASPr"/>
@@ -447888,16 +446757,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03712c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03712c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01369c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01370c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02360c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01369c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01370c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02360c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11090" sboTerm="SBO:0000176" id="MAR11090" name="Metabolism (Formation/Degradation) of LeuAspLys" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11090" sboTerm="SBO:0000176" id="R_MAR11090" name="Metabolism (Formation/Degradation) of LeuAspLys" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -447905,7 +446774,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11090">
+            <rdf:Description rdf:about="#R_MAR11090">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/LEUASPLYSr"/>
@@ -447916,16 +446785,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03713c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03713c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01370c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02360c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02426c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01370c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02360c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02426c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11091" sboTerm="SBO:0000176" id="MAR11091" name="Metabolism (Formation/Degradation) of LeuLeuTrp" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11091" sboTerm="SBO:0000176" id="R_MAR11091" name="Metabolism (Formation/Degradation) of LeuLeuTrp" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -447933,7 +446802,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11091">
+            <rdf:Description rdf:about="#R_MAR11091">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/LEULEUTRPr"/>
@@ -447944,15 +446813,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03716c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03716c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02360c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03089c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02360c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03089c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11092" sboTerm="SBO:0000176" id="MAR11092" name="Metabolism (Formation/Degradation) of LeuPro" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11092" sboTerm="SBO:0000176" id="R_MAR11092" name="Metabolism (Formation/Degradation) of LeuPro" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -447960,7 +446829,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11092">
+            <rdf:Description rdf:about="#R_MAR11092">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/LEUPROr"/>
@@ -447971,15 +446840,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03717c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03717c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02360c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02770c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02360c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02770c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11093" sboTerm="SBO:0000176" id="MAR11093" name="Metabolism (Formation/Degradation) of LeuProArg" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11093" sboTerm="SBO:0000176" id="R_MAR11093" name="Metabolism (Formation/Degradation) of LeuProArg" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -447987,7 +446856,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11093">
+            <rdf:Description rdf:about="#R_MAR11093">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/LEUPROARGr"/>
@@ -447998,16 +446867,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03718c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03718c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01365c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02360c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02770c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01365c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02360c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02770c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11094" sboTerm="SBO:0000176" id="MAR11094" name="Metabolism (Formation/Degradation) of LeuSerTrp" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11094" sboTerm="SBO:0000176" id="R_MAR11094" name="Metabolism (Formation/Degradation) of LeuSerTrp" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -448015,7 +446884,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11094">
+            <rdf:Description rdf:about="#R_MAR11094">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/LEUSERTRPr"/>
@@ -448026,16 +446895,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03719c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03719c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02360c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02896c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03089c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02360c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02896c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03089c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11095" sboTerm="SBO:0000176" id="MAR11095" name="Metabolism (Formation/Degradation) of LeuTrp" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11095" sboTerm="SBO:0000176" id="R_MAR11095" name="Metabolism (Formation/Degradation) of LeuTrp" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -448043,7 +446912,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11095">
+            <rdf:Description rdf:about="#R_MAR11095">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/LEUTRPr"/>
@@ -448054,15 +446923,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03720c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03720c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02360c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03089c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02360c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03089c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11096" sboTerm="SBO:0000176" id="MAR11096" name="Metabolism (Formation/Degradation) of LeuTrpArg" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11096" sboTerm="SBO:0000176" id="R_MAR11096" name="Metabolism (Formation/Degradation) of LeuTrpArg" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -448070,7 +446939,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11096">
+            <rdf:Description rdf:about="#R_MAR11096">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/LEUTRPARGr"/>
@@ -448081,16 +446950,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03721c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03721c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01365c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02360c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03089c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01365c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02360c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03089c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11097" sboTerm="SBO:0000176" id="MAR11097" name="Metabolism (Formation/Degradation) of Leutyrtyr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11097" sboTerm="SBO:0000176" id="R_MAR11097" name="Metabolism (Formation/Degradation) of Leutyrtyr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -448098,7 +446967,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11097">
+            <rdf:Description rdf:about="#R_MAR11097">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/LEUTYRTYRr"/>
@@ -448109,15 +446978,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03722c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03722c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02360c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03101c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02360c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03101c" stoichiometry="2" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11098" sboTerm="SBO:0000176" id="MAR11098" name="Metabolism (Formation/Degradation) of LeuVal" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11098" sboTerm="SBO:0000176" id="R_MAR11098" name="Metabolism (Formation/Degradation) of LeuVal" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -448125,7 +446994,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11098">
+            <rdf:Description rdf:about="#R_MAR11098">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/LEUVALr"/>
@@ -448136,15 +447005,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03723c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03723c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02360c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03135c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02360c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03135c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11099" sboTerm="SBO:0000176" id="MAR11099" name="Metabolism (Formation/Degradation) of LysArgLeu" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11099" sboTerm="SBO:0000176" id="R_MAR11099" name="Metabolism (Formation/Degradation) of LysArgLeu" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -448152,7 +447021,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11099">
+            <rdf:Description rdf:about="#R_MAR11099">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/LYSARGLEUr"/>
@@ -448163,17 +447032,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03738c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03738c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01365c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02360c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02426c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01365c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02360c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02426c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11100" sboTerm="SBO:0000176" id="MAR11100" name="Metabolism (Formation/Degradation) of LysCysHis" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11100" sboTerm="SBO:0000176" id="R_MAR11100" name="Metabolism (Formation/Degradation) of LysCysHis" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -448181,7 +447050,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11100">
+            <rdf:Description rdf:about="#R_MAR11100">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/LYSCYSHISr"/>
@@ -448192,16 +447061,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03739c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03739c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01628c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02125c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02426c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01628c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02125c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02426c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11101" sboTerm="SBO:0000176" id="MAR11101" name="Metabolism (Formation/Degradation) of LysGlnPhe" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11101" sboTerm="SBO:0000176" id="R_MAR11101" name="Metabolism (Formation/Degradation) of LysGlnPhe" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -448209,7 +447078,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11101">
+            <rdf:Description rdf:about="#R_MAR11101">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/LYSGLNPHEr"/>
@@ -448220,16 +447089,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03740c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03740c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01975c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02426c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02724c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01975c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02426c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02724c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11102" sboTerm="SBO:0000176" id="MAR11102" name="Metabolism (Formation/Degradation) of LysGluGlu" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11102" sboTerm="SBO:0000176" id="R_MAR11102" name="Metabolism (Formation/Degradation) of LysGluGlu" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -448237,7 +447106,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11102">
+            <rdf:Description rdf:about="#R_MAR11102">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/LYSGLUGLUr"/>
@@ -448248,15 +447117,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03741c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03741c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01974c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02426c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01974c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02426c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11103" sboTerm="SBO:0000176" id="MAR11103" name="Metabolism (Formation/Degradation) of LysLysLys" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11103" sboTerm="SBO:0000176" id="R_MAR11103" name="Metabolism (Formation/Degradation) of LysLysLys" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -448264,7 +447133,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11103">
+            <rdf:Description rdf:about="#R_MAR11103">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/LYSLYSLYSr"/>
@@ -448275,14 +447144,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03742c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03742c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02426c" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM02426c" stoichiometry="3" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11104" sboTerm="SBO:0000176" id="MAR11104" name="Metabolism (Formation/Degradation) of LysPheIle" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11104" sboTerm="SBO:0000176" id="R_MAR11104" name="Metabolism (Formation/Degradation) of LysPheIle" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -448290,7 +447159,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11104">
+            <rdf:Description rdf:about="#R_MAR11104">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/LYSPHEILEr"/>
@@ -448301,16 +447170,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03743c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03743c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02184c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02426c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02724c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02184c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02426c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02724c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11105" sboTerm="SBO:0000176" id="MAR11105" name="Metabolism (Formation/Degradation) of LysTrpArg" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11105" sboTerm="SBO:0000176" id="R_MAR11105" name="Metabolism (Formation/Degradation) of LysTrpArg" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -448318,7 +447187,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11105">
+            <rdf:Description rdf:about="#R_MAR11105">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/LYSTRPARGr"/>
@@ -448329,16 +447198,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03744c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03744c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01365c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02426c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03089c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01365c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02426c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03089c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11106" sboTerm="SBO:0000176" id="MAR11106" name="Metabolism (Formation/Degradation) of LystyrIle" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11106" sboTerm="SBO:0000176" id="R_MAR11106" name="Metabolism (Formation/Degradation) of LystyrIle" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -448346,7 +447215,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11106">
+            <rdf:Description rdf:about="#R_MAR11106">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/LYSTYRILEr"/>
@@ -448357,16 +447226,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03745c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03745c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02184c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02426c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03101c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02184c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02426c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03101c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11107" sboTerm="SBO:0000176" id="MAR11107" name="Metabolism (Formation/Degradation) of LysValPhe" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11107" sboTerm="SBO:0000176" id="R_MAR11107" name="Metabolism (Formation/Degradation) of LysValPhe" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -448374,7 +447243,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11107">
+            <rdf:Description rdf:about="#R_MAR11107">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/LYSVALPHEr"/>
@@ -448385,16 +447254,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03746c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03746c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02426c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02724c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03135c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02426c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02724c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03135c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11108" sboTerm="SBO:0000176" id="MAR11108" name="Metabolism (Formation/Degradation) of LysValTrp" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11108" sboTerm="SBO:0000176" id="R_MAR11108" name="Metabolism (Formation/Degradation) of LysValTrp" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -448402,7 +447271,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11108">
+            <rdf:Description rdf:about="#R_MAR11108">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/LYSVALTRPr"/>
@@ -448413,16 +447282,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03747c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03747c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02426c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03089c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03135c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02426c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03089c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03135c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11109" sboTerm="SBO:0000176" id="MAR11109" name="Metabolism (Formation/Degradation) of MetArgLeu" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11109" sboTerm="SBO:0000176" id="R_MAR11109" name="Metabolism (Formation/Degradation) of MetArgLeu" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -448430,7 +447299,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11109">
+            <rdf:Description rdf:about="#R_MAR11109">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/METARGLEUr"/>
@@ -448441,16 +447310,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03760c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03760c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01365c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02360c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02471c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01365c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02360c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02471c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11110" sboTerm="SBO:0000176" id="MAR11110" name="Metabolism (Formation/Degradation) of MetAsntyr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11110" sboTerm="SBO:0000176" id="R_MAR11110" name="Metabolism (Formation/Degradation) of MetAsntyr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -448458,7 +447327,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11110">
+            <rdf:Description rdf:about="#R_MAR11110">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/METASNTYRr"/>
@@ -448469,16 +447338,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03761c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03761c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01369c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02471c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03101c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01369c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02471c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03101c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11111" sboTerm="SBO:0000176" id="MAR11111" name="Metabolism (Formation/Degradation) of MetGlntyr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11111" sboTerm="SBO:0000176" id="R_MAR11111" name="Metabolism (Formation/Degradation) of MetGlntyr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -448486,7 +447355,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11111">
+            <rdf:Description rdf:about="#R_MAR11111">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/METGLNTYRr"/>
@@ -448497,16 +447366,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03762c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03762c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01975c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02471c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03101c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01975c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02471c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03101c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11112" sboTerm="SBO:0000176" id="MAR11112" name="Metabolism (Formation/Degradation) of MetGlyArg" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11112" sboTerm="SBO:0000176" id="R_MAR11112" name="Metabolism (Formation/Degradation) of MetGlyArg" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -448514,7 +447383,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11112">
+            <rdf:Description rdf:about="#R_MAR11112">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/METGLYARGr"/>
@@ -448525,16 +447394,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03763c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03763c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01365c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01986c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02471c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01365c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02471c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11113" sboTerm="SBO:0000176" id="MAR11113" name="Metabolism (Formation/Degradation) of MetHisLys" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11113" sboTerm="SBO:0000176" id="R_MAR11113" name="Metabolism (Formation/Degradation) of MetHisLys" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -448542,7 +447411,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11113">
+            <rdf:Description rdf:about="#R_MAR11113">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/METHISLYSr"/>
@@ -448553,16 +447422,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03764c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03764c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02125c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02426c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02471c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02125c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02426c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02471c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11114" sboTerm="SBO:0000176" id="MAR11114" name="Metabolism (Formation/Degradation) of MetMetIle" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11114" sboTerm="SBO:0000176" id="R_MAR11114" name="Metabolism (Formation/Degradation) of MetMetIle" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -448570,7 +447439,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11114">
+            <rdf:Description rdf:about="#R_MAR11114">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/METMETILEr"/>
@@ -448581,15 +447450,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03767c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03767c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02184c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02471c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02184c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02471c" stoichiometry="2" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11115" sboTerm="SBO:0000176" id="MAR11115" name="Metabolism (Formation/Degradation) of MetPheArg" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11115" sboTerm="SBO:0000176" id="R_MAR11115" name="Metabolism (Formation/Degradation) of MetPheArg" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -448597,7 +447466,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11115">
+            <rdf:Description rdf:about="#R_MAR11115">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/METPHEARGr"/>
@@ -448608,16 +447477,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03768c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03768c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01365c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02471c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02724c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01365c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02471c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02724c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11116" sboTerm="SBO:0000176" id="MAR11116" name="Metabolism (Formation/Degradation) of MetTrpPhe" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11116" sboTerm="SBO:0000176" id="R_MAR11116" name="Metabolism (Formation/Degradation) of MetTrpPhe" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -448625,7 +447494,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11116">
+            <rdf:Description rdf:about="#R_MAR11116">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/METTRPPHEr"/>
@@ -448636,16 +447505,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03769c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03769c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02471c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02724c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03089c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02471c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02724c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03089c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11117" sboTerm="SBO:0000176" id="MAR11117" name="Metabolism (Formation/Degradation) of PheAsnMet" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11117" sboTerm="SBO:0000176" id="R_MAR11117" name="Metabolism (Formation/Degradation) of PheAsnMet" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -448653,7 +447522,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11117">
+            <rdf:Description rdf:about="#R_MAR11117">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PHEASNMETr"/>
@@ -448664,16 +447533,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03864c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03864c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01369c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02471c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02724c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01369c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02471c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02724c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11118" sboTerm="SBO:0000176" id="MAR11118" name="Metabolism (Formation/Degradation) of PheAsp" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11118" sboTerm="SBO:0000176" id="R_MAR11118" name="Metabolism (Formation/Degradation) of PheAsp" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -448681,7 +447550,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11118">
+            <rdf:Description rdf:about="#R_MAR11118">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PHEASPr"/>
@@ -448692,15 +447561,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03865c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03865c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01370c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02724c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01370c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02724c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11119" sboTerm="SBO:0000176" id="MAR11119" name="Metabolism (Formation/Degradation) of PheGlnPhe" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11119" sboTerm="SBO:0000176" id="R_MAR11119" name="Metabolism (Formation/Degradation) of PheGlnPhe" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -448708,7 +447577,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11119">
+            <rdf:Description rdf:about="#R_MAR11119">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PHEGLNPHEr"/>
@@ -448719,15 +447588,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03866c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03866c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01975c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02724c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01975c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02724c" stoichiometry="2" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11120" sboTerm="SBO:0000176" id="MAR11120" name="Metabolism (Formation/Degradation) of PheLeu" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11120" sboTerm="SBO:0000176" id="R_MAR11120" name="Metabolism (Formation/Degradation) of PheLeu" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -448735,7 +447604,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11120">
+            <rdf:Description rdf:about="#R_MAR11120">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PHELEUr"/>
@@ -448746,15 +447615,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03867c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03867c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02360c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02724c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02360c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02724c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11121" sboTerm="SBO:0000176" id="MAR11121" name="Metabolism (Formation/Degradation) of PheLeuAsp" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11121" sboTerm="SBO:0000176" id="R_MAR11121" name="Metabolism (Formation/Degradation) of PheLeuAsp" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -448762,7 +447631,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11121">
+            <rdf:Description rdf:about="#R_MAR11121">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PHELEUASPr"/>
@@ -448773,16 +447642,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03868c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03868c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01370c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02360c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02724c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01370c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02360c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02724c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11122" sboTerm="SBO:0000176" id="MAR11122" name="Metabolism (Formation/Degradation) of PheLeuHis" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11122" sboTerm="SBO:0000176" id="R_MAR11122" name="Metabolism (Formation/Degradation) of PheLeuHis" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -448790,7 +447659,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11122">
+            <rdf:Description rdf:about="#R_MAR11122">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PHELEUHISr"/>
@@ -448801,16 +447670,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03869c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03869c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02125c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02360c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02724c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02125c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02360c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02724c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11123" sboTerm="SBO:0000176" id="MAR11123" name="Metabolism (Formation/Degradation) of PheLysAla" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11123" sboTerm="SBO:0000176" id="R_MAR11123" name="Metabolism (Formation/Degradation) of PheLysAla" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -448818,7 +447687,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11123">
+            <rdf:Description rdf:about="#R_MAR11123">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PHELYSALAr"/>
@@ -448829,16 +447698,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03870c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03870c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01307c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02426c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02724c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01307c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02426c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02724c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11124" sboTerm="SBO:0000176" id="MAR11124" name="Metabolism (Formation/Degradation) of PheLysPro" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11124" sboTerm="SBO:0000176" id="R_MAR11124" name="Metabolism (Formation/Degradation) of PheLysPro" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -448846,7 +447715,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11124">
+            <rdf:Description rdf:about="#R_MAR11124">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PHELYSPROr"/>
@@ -448857,16 +447726,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03871c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03871c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02426c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02724c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02770c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02426c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02724c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02770c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11125" sboTerm="SBO:0000176" id="MAR11125" name="Metabolism (Formation/Degradation) of PhePhe" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11125" sboTerm="SBO:0000176" id="R_MAR11125" name="Metabolism (Formation/Degradation) of PhePhe" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -448874,7 +447743,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11125">
+            <rdf:Description rdf:about="#R_MAR11125">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PHEPHEr"/>
@@ -448885,14 +447754,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03872c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03872c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02724c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02724c" stoichiometry="2" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11126" sboTerm="SBO:0000176" id="MAR11126" name="Metabolism (Formation/Degradation) of PhePheAsn" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11126" sboTerm="SBO:0000176" id="R_MAR11126" name="Metabolism (Formation/Degradation) of PhePheAsn" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -448900,7 +447769,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11126">
+            <rdf:Description rdf:about="#R_MAR11126">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PHEPHEASNr"/>
@@ -448911,15 +447780,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03873c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03873c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01369c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02724c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01369c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02724c" stoichiometry="2" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11127" sboTerm="SBO:0000176" id="MAR11127" name="Metabolism (Formation/Degradation) of PhePheThr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11127" sboTerm="SBO:0000176" id="R_MAR11127" name="Metabolism (Formation/Degradation) of PhePheThr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -448927,7 +447796,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11127">
+            <rdf:Description rdf:about="#R_MAR11127">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PHEPHETHRr"/>
@@ -448938,15 +447807,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03874c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03874c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02724c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02993c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02724c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02993c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11128" sboTerm="SBO:0000176" id="MAR11128" name="Metabolism (Formation/Degradation) of PheProArg" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11128" sboTerm="SBO:0000176" id="R_MAR11128" name="Metabolism (Formation/Degradation) of PheProArg" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -448954,7 +447823,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11128">
+            <rdf:Description rdf:about="#R_MAR11128">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PHEPROARGr"/>
@@ -448965,16 +447834,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03875c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03875c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01365c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02724c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02770c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01365c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02724c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02770c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11129" sboTerm="SBO:0000176" id="MAR11129" name="Metabolism (Formation/Degradation) of PheSerTrp" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11129" sboTerm="SBO:0000176" id="R_MAR11129" name="Metabolism (Formation/Degradation) of PheSerTrp" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -448982,7 +447851,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11129">
+            <rdf:Description rdf:about="#R_MAR11129">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PHESERTRPr"/>
@@ -448993,16 +447862,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03876c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03876c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02724c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02896c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03089c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02724c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02896c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03089c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11130" sboTerm="SBO:0000176" id="MAR11130" name="Metabolism (Formation/Degradation) of PheThrLys" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11130" sboTerm="SBO:0000176" id="R_MAR11130" name="Metabolism (Formation/Degradation) of PheThrLys" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -449010,7 +447879,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11130">
+            <rdf:Description rdf:about="#R_MAR11130">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PHETHRLYSr"/>
@@ -449021,16 +447890,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03877c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03877c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02426c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02724c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02993c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02426c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02724c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02993c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11131" sboTerm="SBO:0000176" id="MAR11131" name="Metabolism (Formation/Degradation) of PheTrpLeu" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11131" sboTerm="SBO:0000176" id="R_MAR11131" name="Metabolism (Formation/Degradation) of PheTrpLeu" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -449038,7 +447907,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11131">
+            <rdf:Description rdf:about="#R_MAR11131">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PHETRPLEUr"/>
@@ -449049,16 +447918,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03878c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03878c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02360c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02724c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03089c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02360c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02724c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03089c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11132" sboTerm="SBO:0000176" id="MAR11132" name="Metabolism (Formation/Degradation) of Phetyr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11132" sboTerm="SBO:0000176" id="R_MAR11132" name="Metabolism (Formation/Degradation) of Phetyr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -449066,7 +447935,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11132">
+            <rdf:Description rdf:about="#R_MAR11132">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PHETYRr"/>
@@ -449077,15 +447946,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03879c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03879c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02724c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03101c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02724c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03101c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11133" sboTerm="SBO:0000176" id="MAR11133" name="Metabolism (Formation/Degradation) of PhetyrGln" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11133" sboTerm="SBO:0000176" id="R_MAR11133" name="Metabolism (Formation/Degradation) of PhetyrGln" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -449093,7 +447962,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11133">
+            <rdf:Description rdf:about="#R_MAR11133">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PHETYRGLNr"/>
@@ -449104,16 +447973,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03880c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03880c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01975c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02724c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03101c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01975c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02724c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03101c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11134" sboTerm="SBO:0000176" id="MAR11134" name="Metabolism (Formation/Degradation) of PhetyrLys" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11134" sboTerm="SBO:0000176" id="R_MAR11134" name="Metabolism (Formation/Degradation) of PhetyrLys" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -449121,7 +447990,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11134">
+            <rdf:Description rdf:about="#R_MAR11134">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PHETYRLYSr"/>
@@ -449132,16 +448001,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03881c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03881c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02426c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02724c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03101c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02426c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02724c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03101c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11135" sboTerm="SBO:0000176" id="MAR11135" name="Metabolism (Formation/Degradation) of ProArgAsp" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11135" sboTerm="SBO:0000176" id="R_MAR11135" name="Metabolism (Formation/Degradation) of ProArgAsp" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -449149,7 +448018,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11135">
+            <rdf:Description rdf:about="#R_MAR11135">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PROARGASPr"/>
@@ -449160,16 +448029,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03888c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03888c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01365c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01370c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02770c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01365c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01370c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02770c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11136" sboTerm="SBO:0000176" id="MAR11136" name="Metabolism (Formation/Degradation) of ProArgCys" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11136" sboTerm="SBO:0000176" id="R_MAR11136" name="Metabolism (Formation/Degradation) of ProArgCys" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -449177,7 +448046,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11136">
+            <rdf:Description rdf:about="#R_MAR11136">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PROARGCYSr"/>
@@ -449188,16 +448057,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03889c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03889c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01365c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01628c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02770c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01365c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01628c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02770c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11137" sboTerm="SBO:0000176" id="MAR11137" name="Metabolism (Formation/Degradation) of ProAsnCys" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11137" sboTerm="SBO:0000176" id="R_MAR11137" name="Metabolism (Formation/Degradation) of ProAsnCys" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -449205,7 +448074,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11137">
+            <rdf:Description rdf:about="#R_MAR11137">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PROASNCYSr"/>
@@ -449216,16 +448085,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03890c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03890c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01369c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01628c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02770c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01369c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01628c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02770c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11138" sboTerm="SBO:0000176" id="MAR11138" name="Metabolism (Formation/Degradation) of ProCys" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11138" sboTerm="SBO:0000176" id="R_MAR11138" name="Metabolism (Formation/Degradation) of ProCys" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -449233,7 +448102,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11138">
+            <rdf:Description rdf:about="#R_MAR11138">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PROCYSr"/>
@@ -449244,15 +448113,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03891c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03891c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01628c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02770c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01628c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02770c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11139" sboTerm="SBO:0000176" id="MAR11139" name="Metabolism (Formation/Degradation) of ProGlnPro" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11139" sboTerm="SBO:0000176" id="R_MAR11139" name="Metabolism (Formation/Degradation) of ProGlnPro" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -449260,7 +448129,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11139">
+            <rdf:Description rdf:about="#R_MAR11139">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PROGLNPROr"/>
@@ -449271,15 +448140,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03894c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03894c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01975c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02770c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01975c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02770c" stoichiometry="2" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11140" sboTerm="SBO:0000176" id="MAR11140" name="Metabolism (Formation/Degradation) of ProGluLys" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11140" sboTerm="SBO:0000176" id="R_MAR11140" name="Metabolism (Formation/Degradation) of ProGluLys" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -449287,7 +448156,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11140">
+            <rdf:Description rdf:about="#R_MAR11140">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PROGLULYSr"/>
@@ -449298,16 +448167,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03895c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03895c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01974c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02426c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02770c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01974c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02426c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02770c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11141" sboTerm="SBO:0000176" id="MAR11141" name="Metabolism (Formation/Degradation) of ProHis" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11141" sboTerm="SBO:0000176" id="R_MAR11141" name="Metabolism (Formation/Degradation) of ProHis" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -449315,7 +448184,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11141">
+            <rdf:Description rdf:about="#R_MAR11141">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PROHISr"/>
@@ -449326,15 +448195,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03897c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03897c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02125c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02770c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02125c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02770c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11142" sboTerm="SBO:0000176" id="MAR11142" name="Metabolism (Formation/Degradation) of ProHistyr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11142" sboTerm="SBO:0000176" id="R_MAR11142" name="Metabolism (Formation/Degradation) of ProHistyr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -449342,7 +448211,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11142">
+            <rdf:Description rdf:about="#R_MAR11142">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PROHISTYRr"/>
@@ -449353,17 +448222,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03898c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03898c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02125c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02770c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03101c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02125c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02770c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03101c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11143" sboTerm="SBO:0000176" id="MAR11143" name="Metabolism (Formation/Degradation) of ProLeuArg" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11143" sboTerm="SBO:0000176" id="R_MAR11143" name="Metabolism (Formation/Degradation) of ProLeuArg" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -449371,7 +448240,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11143">
+            <rdf:Description rdf:about="#R_MAR11143">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PROLEUARGr"/>
@@ -449382,16 +448251,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03899c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03899c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01365c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02360c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02770c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01365c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02360c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02770c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11144" sboTerm="SBO:0000176" id="MAR11144" name="Metabolism (Formation/Degradation) of ProLysPro" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11144" sboTerm="SBO:0000176" id="R_MAR11144" name="Metabolism (Formation/Degradation) of ProLysPro" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -449399,7 +448268,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11144">
+            <rdf:Description rdf:about="#R_MAR11144">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PROLYSPROr"/>
@@ -449410,15 +448279,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03900c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03900c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02426c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02770c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02426c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02770c" stoichiometry="2" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11145" sboTerm="SBO:0000176" id="MAR11145" name="Metabolism (Formation/Degradation) of ProPhe" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11145" sboTerm="SBO:0000176" id="R_MAR11145" name="Metabolism (Formation/Degradation) of ProPhe" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -449426,7 +448295,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11145">
+            <rdf:Description rdf:about="#R_MAR11145">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PROPHEr"/>
@@ -449437,15 +448306,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03901c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03901c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02724c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02770c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02724c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02770c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11146" sboTerm="SBO:0000176" id="MAR11146" name="Metabolism (Formation/Degradation) of ProProArg" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11146" sboTerm="SBO:0000176" id="R_MAR11146" name="Metabolism (Formation/Degradation) of ProProArg" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -449453,7 +448322,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11146">
+            <rdf:Description rdf:about="#R_MAR11146">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PROPROARGr"/>
@@ -449464,15 +448333,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03902c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03902c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01365c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02770c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01365c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02770c" stoichiometry="2" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11147" sboTerm="SBO:0000176" id="MAR11147" name="Metabolism (Formation/Degradation) of ProProPro" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11147" sboTerm="SBO:0000176" id="R_MAR11147" name="Metabolism (Formation/Degradation) of ProProPro" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -449480,7 +448349,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11147">
+            <rdf:Description rdf:about="#R_MAR11147">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PROPROPROr"/>
@@ -449491,14 +448360,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03903c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03903c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02770c" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM02770c" stoichiometry="3" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11148" sboTerm="SBO:0000176" id="MAR11148" name="Metabolism (Formation/Degradation) of ProTrpLys" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11148" sboTerm="SBO:0000176" id="R_MAR11148" name="Metabolism (Formation/Degradation) of ProTrpLys" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -449506,7 +448375,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11148">
+            <rdf:Description rdf:about="#R_MAR11148">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PROTRPLYSr"/>
@@ -449517,16 +448386,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03904c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03904c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02426c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02770c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03089c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02426c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02770c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03089c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11149" sboTerm="SBO:0000176" id="MAR11149" name="Metabolism (Formation/Degradation) of ProTrpThr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11149" sboTerm="SBO:0000176" id="R_MAR11149" name="Metabolism (Formation/Degradation) of ProTrpThr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -449534,7 +448403,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11149">
+            <rdf:Description rdf:about="#R_MAR11149">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PROTRPTHRr"/>
@@ -449545,16 +448414,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03905c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03905c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02770c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02993c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03089c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02770c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02993c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03089c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11150" sboTerm="SBO:0000176" id="MAR11150" name="Metabolism (Formation/Degradation) of ProValGln" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11150" sboTerm="SBO:0000176" id="R_MAR11150" name="Metabolism (Formation/Degradation) of ProValGln" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -449562,7 +448431,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11150">
+            <rdf:Description rdf:about="#R_MAR11150">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PROVALGLNr"/>
@@ -449573,16 +448442,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03906c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03906c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01975c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02770c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03135c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01975c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02770c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03135c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11151" sboTerm="SBO:0000176" id="MAR11151" name="Metabolism (Formation/Degradation) of SerArgAla" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11151" sboTerm="SBO:0000176" id="R_MAR11151" name="Metabolism (Formation/Degradation) of SerArgAla" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -449590,7 +448459,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11151">
+            <rdf:Description rdf:about="#R_MAR11151">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/SERARGALAr"/>
@@ -449601,16 +448470,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03925c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03925c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01307c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01365c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02896c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01307c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01365c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02896c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11152" sboTerm="SBO:0000176" id="MAR11152" name="Metabolism (Formation/Degradation) of SerArgTrp" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11152" sboTerm="SBO:0000176" id="R_MAR11152" name="Metabolism (Formation/Degradation) of SerArgTrp" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -449618,7 +448487,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11152">
+            <rdf:Description rdf:about="#R_MAR11152">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/SERARGTRPr"/>
@@ -449629,16 +448498,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03926c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03926c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01365c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02896c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03089c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01365c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02896c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03089c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11153" sboTerm="SBO:0000176" id="MAR11153" name="Metabolism (Formation/Degradation) of SerCysArg" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11153" sboTerm="SBO:0000176" id="R_MAR11153" name="Metabolism (Formation/Degradation) of SerCysArg" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -449646,7 +448515,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11153">
+            <rdf:Description rdf:about="#R_MAR11153">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/SERCYSARGr"/>
@@ -449657,16 +448526,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03927c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03927c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01365c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01628c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02896c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01365c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01628c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02896c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11154" sboTerm="SBO:0000176" id="MAR11154" name="Metabolism (Formation/Degradation) of SerGlyGlu" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11154" sboTerm="SBO:0000176" id="R_MAR11154" name="Metabolism (Formation/Degradation) of SerGlyGlu" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -449674,7 +448543,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11154">
+            <rdf:Description rdf:about="#R_MAR11154">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/SERGLYGLUr"/>
@@ -449685,16 +448554,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03928c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03928c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01974c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01986c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02896c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01974c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02896c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11155" sboTerm="SBO:0000176" id="MAR11155" name="Metabolism (Formation/Degradation) of SerLysHis" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11155" sboTerm="SBO:0000176" id="R_MAR11155" name="Metabolism (Formation/Degradation) of SerLysHis" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -449702,7 +448571,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11155">
+            <rdf:Description rdf:about="#R_MAR11155">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/SERLYSHISr"/>
@@ -449713,16 +448582,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03929c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03929c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02125c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02426c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02896c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02125c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02426c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02896c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11156" sboTerm="SBO:0000176" id="MAR11156" name="Metabolism (Formation/Degradation) of SerPheLys" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11156" sboTerm="SBO:0000176" id="R_MAR11156" name="Metabolism (Formation/Degradation) of SerPheLys" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -449730,7 +448599,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11156">
+            <rdf:Description rdf:about="#R_MAR11156">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/SERPHELYSr"/>
@@ -449741,16 +448610,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03930c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03930c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02426c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02724c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02896c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02426c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02724c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02896c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11157" sboTerm="SBO:0000176" id="MAR11157" name="Metabolism (Formation/Degradation) of SerTrpHis" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11157" sboTerm="SBO:0000176" id="R_MAR11157" name="Metabolism (Formation/Degradation) of SerTrpHis" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -449758,7 +448627,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11157">
+            <rdf:Description rdf:about="#R_MAR11157">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/SERTRPHISr"/>
@@ -449769,16 +448638,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03931c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03931c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02125c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02896c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03089c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02125c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02896c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03089c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11158" sboTerm="SBO:0000176" id="MAR11158" name="Metabolism (Formation/Degradation) of ThrArgtyr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11158" sboTerm="SBO:0000176" id="R_MAR11158" name="Metabolism (Formation/Degradation) of ThrArgtyr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -449786,7 +448655,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11158">
+            <rdf:Description rdf:about="#R_MAR11158">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/THRARGTYRr"/>
@@ -449797,16 +448666,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03983c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03983c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01365c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02993c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03101c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01365c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02993c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03101c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11159" sboTerm="SBO:0000176" id="MAR11159" name="Metabolism (Formation/Degradation) of ThrAsntyr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11159" sboTerm="SBO:0000176" id="R_MAR11159" name="Metabolism (Formation/Degradation) of ThrAsntyr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -449814,7 +448683,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11159">
+            <rdf:Description rdf:about="#R_MAR11159">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/THRASNTYRr"/>
@@ -449825,16 +448694,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03984c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03984c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01369c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02993c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03101c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01369c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02993c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03101c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11160" sboTerm="SBO:0000176" id="MAR11160" name="Metabolism (Formation/Degradation) of ThrGlnGlu" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11160" sboTerm="SBO:0000176" id="R_MAR11160" name="Metabolism (Formation/Degradation) of ThrGlnGlu" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -449842,7 +448711,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11160">
+            <rdf:Description rdf:about="#R_MAR11160">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/THRGLNGLUr"/>
@@ -449853,16 +448722,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03986c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03986c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01974c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01975c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02993c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01974c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01975c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02993c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11161" sboTerm="SBO:0000176" id="MAR11161" name="Metabolism (Formation/Degradation) of ThrGlntyr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11161" sboTerm="SBO:0000176" id="R_MAR11161" name="Metabolism (Formation/Degradation) of ThrGlntyr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -449870,7 +448739,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11161">
+            <rdf:Description rdf:about="#R_MAR11161">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/THRGLNTYRr"/>
@@ -449881,16 +448750,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03987c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03987c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01975c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02993c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03101c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01975c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02993c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03101c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11162" sboTerm="SBO:0000176" id="MAR11162" name="Metabolism (Formation/Degradation) of ThrHisHis" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11162" sboTerm="SBO:0000176" id="R_MAR11162" name="Metabolism (Formation/Degradation) of ThrHisHis" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -449898,7 +448767,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11162">
+            <rdf:Description rdf:about="#R_MAR11162">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/THRHISHISr"/>
@@ -449909,15 +448778,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03988c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03988c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02125c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02993c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02125c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02993c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11163" sboTerm="SBO:0000176" id="MAR11163" name="Metabolism (Formation/Degradation) of ThrIleArg" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11163" sboTerm="SBO:0000176" id="R_MAR11163" name="Metabolism (Formation/Degradation) of ThrIleArg" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -449925,7 +448794,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11163">
+            <rdf:Description rdf:about="#R_MAR11163">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/THRILEARGr"/>
@@ -449936,16 +448805,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03989c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03989c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01365c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02184c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02993c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01365c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02184c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02993c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11164" sboTerm="SBO:0000176" id="MAR11164" name="Metabolism (Formation/Degradation) of ThrMetArg" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11164" sboTerm="SBO:0000176" id="R_MAR11164" name="Metabolism (Formation/Degradation) of ThrMetArg" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -449953,7 +448822,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11164">
+            <rdf:Description rdf:about="#R_MAR11164">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/THRMETARGr"/>
@@ -449964,16 +448833,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03990c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03990c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01365c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02471c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02993c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01365c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02471c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02993c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11165" sboTerm="SBO:0000176" id="MAR11165" name="Metabolism (Formation/Degradation) of ThrPheArg" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11165" sboTerm="SBO:0000176" id="R_MAR11165" name="Metabolism (Formation/Degradation) of ThrPheArg" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -449981,7 +448850,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11165">
+            <rdf:Description rdf:about="#R_MAR11165">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/THRPHEARGr"/>
@@ -449992,16 +448861,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03991c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03991c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01365c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02724c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02993c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01365c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02724c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02993c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11166" sboTerm="SBO:0000176" id="MAR11166" name="Metabolism (Formation/Degradation) of ThrSerArg" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11166" sboTerm="SBO:0000176" id="R_MAR11166" name="Metabolism (Formation/Degradation) of ThrSerArg" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -450009,7 +448878,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11166">
+            <rdf:Description rdf:about="#R_MAR11166">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/THRSERARGr"/>
@@ -450020,16 +448889,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03992c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03992c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01365c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02896c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02993c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01365c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02896c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02993c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11167" sboTerm="SBO:0000176" id="MAR11167" name="Metabolism (Formation/Degradation) of ThrThrArg" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11167" sboTerm="SBO:0000176" id="R_MAR11167" name="Metabolism (Formation/Degradation) of ThrThrArg" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -450037,7 +448906,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11167">
+            <rdf:Description rdf:about="#R_MAR11167">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/THRTHRARGr"/>
@@ -450048,15 +448917,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03993c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03993c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01365c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02993c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01365c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02993c" stoichiometry="2" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11168" sboTerm="SBO:0000176" id="MAR11168" name="Metabolism (Formation/Degradation) of ThrtyrMet" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11168" sboTerm="SBO:0000176" id="R_MAR11168" name="Metabolism (Formation/Degradation) of ThrtyrMet" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -450064,7 +448933,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11168">
+            <rdf:Description rdf:about="#R_MAR11168">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/THRTYRMETr"/>
@@ -450075,16 +448944,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03994c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03994c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02471c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02993c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03101c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02471c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02993c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03101c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11169" sboTerm="SBO:0000176" id="MAR11169" name="Metabolism (Formation/Degradation) of TrpAlaPro" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11169" sboTerm="SBO:0000176" id="R_MAR11169" name="Metabolism (Formation/Degradation) of TrpAlaPro" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -450092,7 +448961,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11169">
+            <rdf:Description rdf:about="#R_MAR11169">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/TRPALAPROr"/>
@@ -450103,16 +448972,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM04008c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM04008c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01307c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02770c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03089c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01307c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02770c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03089c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11170" sboTerm="SBO:0000176" id="MAR11170" name="Metabolism (Formation/Degradation) of TrpArgAla" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11170" sboTerm="SBO:0000176" id="R_MAR11170" name="Metabolism (Formation/Degradation) of TrpArgAla" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -450120,7 +448989,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11170">
+            <rdf:Description rdf:about="#R_MAR11170">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/TRPARGALAr"/>
@@ -450131,16 +449000,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM04009c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM04009c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01307c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01365c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03089c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01307c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01365c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03089c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11171" sboTerm="SBO:0000176" id="MAR11171" name="Metabolism (Formation/Degradation) of TrpAspAsp" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11171" sboTerm="SBO:0000176" id="R_MAR11171" name="Metabolism (Formation/Degradation) of TrpAspAsp" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -450148,7 +449017,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11171">
+            <rdf:Description rdf:about="#R_MAR11171">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/TRPASPASPr"/>
@@ -450159,15 +449028,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM04010c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM04010c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01370c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03089c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01370c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03089c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11172" sboTerm="SBO:0000176" id="MAR11172" name="Metabolism (Formation/Degradation) of TrpGlnGln" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11172" sboTerm="SBO:0000176" id="R_MAR11172" name="Metabolism (Formation/Degradation) of TrpGlnGln" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -450175,7 +449044,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11172">
+            <rdf:Description rdf:about="#R_MAR11172">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/TRPGLNGLNr"/>
@@ -450186,15 +449055,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM04011c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM04011c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01975c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03089c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01975c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03089c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11173" sboTerm="SBO:0000176" id="MAR11173" name="Metabolism (Formation/Degradation) of TrpGluGly" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11173" sboTerm="SBO:0000176" id="R_MAR11173" name="Metabolism (Formation/Degradation) of TrpGluGly" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -450202,7 +449071,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11173">
+            <rdf:Description rdf:about="#R_MAR11173">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/TRPGLUGLYr"/>
@@ -450213,16 +449082,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM04012c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM04012c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01974c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01986c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03089c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01974c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03089c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11174" sboTerm="SBO:0000176" id="MAR11174" name="Metabolism (Formation/Degradation) of TrpGluLeu" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11174" sboTerm="SBO:0000176" id="R_MAR11174" name="Metabolism (Formation/Degradation) of TrpGluLeu" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -450230,7 +449099,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11174">
+            <rdf:Description rdf:about="#R_MAR11174">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/TRPGLULEUr"/>
@@ -450241,16 +449110,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM04013c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM04013c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01974c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02360c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03089c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01974c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02360c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03089c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11175" sboTerm="SBO:0000176" id="MAR11175" name="Metabolism (Formation/Degradation) of TrpGluPro" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11175" sboTerm="SBO:0000176" id="R_MAR11175" name="Metabolism (Formation/Degradation) of TrpGluPro" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -450258,7 +449127,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11175">
+            <rdf:Description rdf:about="#R_MAR11175">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/TRPGLUPROr"/>
@@ -450269,16 +449138,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM04014c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM04014c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01974c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02770c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03089c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01974c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02770c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03089c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11176" sboTerm="SBO:0000176" id="MAR11176" name="Metabolism (Formation/Degradation) of TrpGlutyr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11176" sboTerm="SBO:0000176" id="R_MAR11176" name="Metabolism (Formation/Degradation) of TrpGlutyr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -450286,7 +449155,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11176">
+            <rdf:Description rdf:about="#R_MAR11176">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/TRPGLUTYRr"/>
@@ -450297,16 +449166,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM04015c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM04015c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01974c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03089c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03101c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01974c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03089c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03101c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11177" sboTerm="SBO:0000176" id="MAR11177" name="Metabolism (Formation/Degradation) of TrpGlyLeu" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11177" sboTerm="SBO:0000176" id="R_MAR11177" name="Metabolism (Formation/Degradation) of TrpGlyLeu" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -450314,7 +449183,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11177">
+            <rdf:Description rdf:about="#R_MAR11177">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/TRPGLYLEUr"/>
@@ -450325,15 +449194,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03089c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03626c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03089c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03626c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM04017c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04017c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11178" sboTerm="SBO:0000176" id="MAR11178" name="Metabolism (Formation/Degradation) of TrpGlyPhe" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11178" sboTerm="SBO:0000176" id="R_MAR11178" name="Metabolism (Formation/Degradation) of TrpGlyPhe" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -450341,7 +449210,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11178">
+            <rdf:Description rdf:about="#R_MAR11178">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/TRPGLYPHEr"/>
@@ -450352,15 +449221,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03089c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03629c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03089c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03629c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM04018c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04018c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11179" sboTerm="SBO:0000176" id="MAR11179" name="Metabolism (Formation/Degradation) of TrpGlyVal" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11179" sboTerm="SBO:0000176" id="R_MAR11179" name="Metabolism (Formation/Degradation) of TrpGlyVal" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -450368,7 +449237,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11179">
+            <rdf:Description rdf:about="#R_MAR11179">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/TRPGLYVALr"/>
@@ -450379,16 +449248,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM04019c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM04019c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01986c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03089c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03135c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03089c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03135c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11180" sboTerm="SBO:0000176" id="MAR11180" name="Metabolism (Formation/Degradation) of TrpHisMet" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11180" sboTerm="SBO:0000176" id="R_MAR11180" name="Metabolism (Formation/Degradation) of TrpHisMet" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -450396,7 +449265,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11180">
+            <rdf:Description rdf:about="#R_MAR11180">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/TRPHISMETr"/>
@@ -450407,16 +449276,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM04020c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM04020c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02125c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02471c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03089c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02125c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02471c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03089c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11181" sboTerm="SBO:0000176" id="MAR11181" name="Metabolism (Formation/Degradation) of TrpIleLys" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11181" sboTerm="SBO:0000176" id="R_MAR11181" name="Metabolism (Formation/Degradation) of TrpIleLys" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -450424,7 +449293,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11181">
+            <rdf:Description rdf:about="#R_MAR11181">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/TRPILELYSr"/>
@@ -450435,16 +449304,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM04021c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM04021c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02184c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02426c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03089c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02184c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02426c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03089c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11182" sboTerm="SBO:0000176" id="MAR11182" name="Metabolism (Formation/Degradation) of TrpIleTrp" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11182" sboTerm="SBO:0000176" id="R_MAR11182" name="Metabolism (Formation/Degradation) of TrpIleTrp" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -450452,7 +449321,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11182">
+            <rdf:Description rdf:about="#R_MAR11182">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/TRPILETRPr"/>
@@ -450463,15 +449332,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM04022c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM04022c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02184c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03089c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02184c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03089c" stoichiometry="2" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11183" sboTerm="SBO:0000176" id="MAR11183" name="Metabolism (Formation/Degradation) of TrpLeuVal" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11183" sboTerm="SBO:0000176" id="R_MAR11183" name="Metabolism (Formation/Degradation) of TrpLeuVal" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -450479,7 +449348,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11183">
+            <rdf:Description rdf:about="#R_MAR11183">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/TRPLEUVALr"/>
@@ -450490,16 +449359,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM04023c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM04023c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02360c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03089c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03135c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02360c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03089c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03135c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11184" sboTerm="SBO:0000176" id="MAR11184" name="Metabolism (Formation/Degradation) of TrpLys" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11184" sboTerm="SBO:0000176" id="R_MAR11184" name="Metabolism (Formation/Degradation) of TrpLys" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -450507,7 +449376,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11184">
+            <rdf:Description rdf:about="#R_MAR11184">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/TRPLYSr"/>
@@ -450518,15 +449387,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM04024c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04024c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02426c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03089c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02426c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03089c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11185" sboTerm="SBO:0000176" id="MAR11185" name="Metabolism (Formation/Degradation) of TrpMetArg" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11185" sboTerm="SBO:0000176" id="R_MAR11185" name="Metabolism (Formation/Degradation) of TrpMetArg" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -450534,7 +449403,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11185">
+            <rdf:Description rdf:about="#R_MAR11185">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/TRPMETARGr"/>
@@ -450545,16 +449414,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM04025c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM04025c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01365c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02471c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03089c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01365c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02471c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03089c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11186" sboTerm="SBO:0000176" id="MAR11186" name="Metabolism (Formation/Degradation) of TrpMetVal" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11186" sboTerm="SBO:0000176" id="R_MAR11186" name="Metabolism (Formation/Degradation) of TrpMetVal" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -450562,7 +449431,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11186">
+            <rdf:Description rdf:about="#R_MAR11186">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/TRPMETVALr"/>
@@ -450573,16 +449442,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM04026c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM04026c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02471c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03089c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03135c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02471c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03089c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03135c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11187" sboTerm="SBO:0000176" id="MAR11187" name="Metabolism (Formation/Degradation) of TrpPhe" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11187" sboTerm="SBO:0000176" id="R_MAR11187" name="Metabolism (Formation/Degradation) of TrpPhe" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -450590,7 +449459,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11187">
+            <rdf:Description rdf:about="#R_MAR11187">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/TRPPHEr"/>
@@ -450601,15 +449470,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM04027c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04027c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02724c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03089c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02724c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03089c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11188" sboTerm="SBO:0000176" id="MAR11188" name="Metabolism (Formation/Degradation) of TrpProGly" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11188" sboTerm="SBO:0000176" id="R_MAR11188" name="Metabolism (Formation/Degradation) of TrpProGly" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -450617,7 +449486,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11188">
+            <rdf:Description rdf:about="#R_MAR11188">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/TRPPROGLYr"/>
@@ -450628,16 +449497,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03089c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03896c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03089c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03896c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM04028c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04028c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11189" sboTerm="SBO:0000176" id="MAR11189" name="Metabolism (Formation/Degradation) of TrpProLeu" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11189" sboTerm="SBO:0000176" id="R_MAR11189" name="Metabolism (Formation/Degradation) of TrpProLeu" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -450645,7 +449514,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11189">
+            <rdf:Description rdf:about="#R_MAR11189">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/TRPPROLEUr"/>
@@ -450656,16 +449525,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM04029c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM04029c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02360c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02770c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03089c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02360c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02770c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03089c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11190" sboTerm="SBO:0000176" id="MAR11190" name="Metabolism (Formation/Degradation) of TrpProVal" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11190" sboTerm="SBO:0000176" id="R_MAR11190" name="Metabolism (Formation/Degradation) of TrpProVal" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -450673,7 +449542,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11190">
+            <rdf:Description rdf:about="#R_MAR11190">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/TRPPROVALr"/>
@@ -450684,16 +449553,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM04030c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM04030c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02770c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03089c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03135c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02770c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03089c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03135c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11191" sboTerm="SBO:0000176" id="MAR11191" name="Metabolism (Formation/Degradation) of TrpSertyr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11191" sboTerm="SBO:0000176" id="R_MAR11191" name="Metabolism (Formation/Degradation) of TrpSertyr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -450701,7 +449570,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11191">
+            <rdf:Description rdf:about="#R_MAR11191">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/TRPSERTYRr"/>
@@ -450712,16 +449581,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM04031c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM04031c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02896c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03089c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03101c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02896c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03089c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03101c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11192" sboTerm="SBO:0000176" id="MAR11192" name="Metabolism (Formation/Degradation) of TrpThrGlu" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11192" sboTerm="SBO:0000176" id="R_MAR11192" name="Metabolism (Formation/Degradation) of TrpThrGlu" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -450729,7 +449598,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11192">
+            <rdf:Description rdf:about="#R_MAR11192">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/TRPTHRGLUr"/>
@@ -450740,16 +449609,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM04032c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM04032c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01974c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02993c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03089c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01974c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02993c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03089c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11193" sboTerm="SBO:0000176" id="MAR11193" name="Metabolism (Formation/Degradation) of TrpThrIle" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11193" sboTerm="SBO:0000176" id="R_MAR11193" name="Metabolism (Formation/Degradation) of TrpThrIle" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -450757,7 +449626,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11193">
+            <rdf:Description rdf:about="#R_MAR11193">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/TRPTHRILEr"/>
@@ -450768,16 +449637,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM04033c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM04033c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02184c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02993c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03089c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02184c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02993c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03089c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11194" sboTerm="SBO:0000176" id="MAR11194" name="Metabolism (Formation/Degradation) of TrpThrtyr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11194" sboTerm="SBO:0000176" id="R_MAR11194" name="Metabolism (Formation/Degradation) of TrpThrtyr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -450785,7 +449654,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11194">
+            <rdf:Description rdf:about="#R_MAR11194">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/TRPTHRTYRr"/>
@@ -450796,16 +449665,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM04034c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM04034c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02993c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03089c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03101c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02993c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03089c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03101c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11195" sboTerm="SBO:0000176" id="MAR11195" name="Metabolism (Formation/Degradation) of TrptyrGln" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11195" sboTerm="SBO:0000176" id="R_MAR11195" name="Metabolism (Formation/Degradation) of TrptyrGln" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -450813,7 +449682,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11195">
+            <rdf:Description rdf:about="#R_MAR11195">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/TRPTYRGLNr"/>
@@ -450824,16 +449693,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM04035c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM04035c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01975c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03089c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03101c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01975c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03089c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03101c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11196" sboTerm="SBO:0000176" id="MAR11196" name="Metabolism (Formation/Degradation) of Trptyrtyr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11196" sboTerm="SBO:0000176" id="R_MAR11196" name="Metabolism (Formation/Degradation) of Trptyrtyr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -450841,7 +449710,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11196">
+            <rdf:Description rdf:about="#R_MAR11196">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/TRPTYRTYRr"/>
@@ -450852,15 +449721,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM04036c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM04036c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03089c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03101c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03089c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03101c" stoichiometry="2" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11197" sboTerm="SBO:0000176" id="MAR11197" name="Metabolism (Formation/Degradation) of TrpValAsp" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11197" sboTerm="SBO:0000176" id="R_MAR11197" name="Metabolism (Formation/Degradation) of TrpValAsp" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -450868,7 +449737,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11197">
+            <rdf:Description rdf:about="#R_MAR11197">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/TRPVALASPr"/>
@@ -450879,16 +449748,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM04037c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM04037c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01370c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03089c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03135c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01370c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03089c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03135c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11198" sboTerm="SBO:0000176" id="MAR11198" name="Metabolism (Formation/Degradation) of TyrAla" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11198" sboTerm="SBO:0000176" id="R_MAR11198" name="Metabolism (Formation/Degradation) of TyrAla" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -450896,7 +449765,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11198">
+            <rdf:Description rdf:about="#R_MAR11198">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/TYRALAr"/>
@@ -450907,15 +449776,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM04043c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04043c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01307c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03101c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01307c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03101c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11199" sboTerm="SBO:0000176" id="MAR11199" name="Metabolism (Formation/Degradation) of TyrAlaPhe" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11199" sboTerm="SBO:0000176" id="R_MAR11199" name="Metabolism (Formation/Degradation) of TyrAlaPhe" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -450923,7 +449792,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11199">
+            <rdf:Description rdf:about="#R_MAR11199">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/TYRALAPHEr"/>
@@ -450934,16 +449803,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM04044c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM04044c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01307c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02724c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03101c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01307c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02724c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03101c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11200" sboTerm="SBO:0000176" id="MAR11200" name="Metabolism (Formation/Degradation) of TyrArgGlu" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11200" sboTerm="SBO:0000176" id="R_MAR11200" name="Metabolism (Formation/Degradation) of TyrArgGlu" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -450951,7 +449820,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11200">
+            <rdf:Description rdf:about="#R_MAR11200">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/TYRARGGLUr"/>
@@ -450962,16 +449831,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM04045c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM04045c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01365c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01974c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03101c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01365c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01974c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03101c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11201" sboTerm="SBO:0000176" id="MAR11201" name="Metabolism (Formation/Degradation) of TyrArgSer" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11201" sboTerm="SBO:0000176" id="R_MAR11201" name="Metabolism (Formation/Degradation) of TyrArgSer" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -450979,7 +449848,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11201">
+            <rdf:Description rdf:about="#R_MAR11201">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/TYRARGSERr"/>
@@ -450990,16 +449859,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM04046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM04046c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01365c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02896c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03101c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01365c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02896c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03101c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11202" sboTerm="SBO:0000176" id="MAR11202" name="Metabolism (Formation/Degradation) of TyrAspArg" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11202" sboTerm="SBO:0000176" id="R_MAR11202" name="Metabolism (Formation/Degradation) of TyrAspArg" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -451007,7 +449876,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11202">
+            <rdf:Description rdf:about="#R_MAR11202">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/TYRASPARGr"/>
@@ -451018,16 +449887,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM04047c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM04047c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01365c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01370c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03101c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01365c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01370c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03101c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11203" sboTerm="SBO:0000176" id="MAR11203" name="Metabolism (Formation/Degradation) of TyrCysGly" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11203" sboTerm="SBO:0000176" id="R_MAR11203" name="Metabolism (Formation/Degradation) of TyrCysGly" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -451035,7 +449904,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11203">
+            <rdf:Description rdf:about="#R_MAR11203">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/TYRCYSGLYr"/>
@@ -451046,16 +449915,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM04048c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM04048c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01628c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01986c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03101c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01628c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03101c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11204" sboTerm="SBO:0000176" id="MAR11204" name="Metabolism (Formation/Degradation) of TyrCysThr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11204" sboTerm="SBO:0000176" id="R_MAR11204" name="Metabolism (Formation/Degradation) of TyrCysThr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -451063,7 +449932,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11204">
+            <rdf:Description rdf:about="#R_MAR11204">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/TYRCYSTHRr"/>
@@ -451074,16 +449943,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM04049c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM04049c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01628c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02993c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03101c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01628c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02993c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03101c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11205" sboTerm="SBO:0000176" id="MAR11205" name="Metabolism (Formation/Degradation) of TyrGlu" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11205" sboTerm="SBO:0000176" id="R_MAR11205" name="Metabolism (Formation/Degradation) of TyrGlu" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -451091,7 +449960,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11205">
+            <rdf:Description rdf:about="#R_MAR11205">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/TYRGLUr"/>
@@ -451102,15 +449971,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM04050c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04050c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01974c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03101c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01974c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03101c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11206" sboTerm="SBO:0000176" id="MAR11206" name="Metabolism (Formation/Degradation) of TyrLeuArg" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11206" sboTerm="SBO:0000176" id="R_MAR11206" name="Metabolism (Formation/Degradation) of TyrLeuArg" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -451118,7 +449987,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11206">
+            <rdf:Description rdf:about="#R_MAR11206">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/TYRLEUARGr"/>
@@ -451129,16 +449998,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM04051c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM04051c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01365c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02360c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03101c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01365c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02360c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03101c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11207" sboTerm="SBO:0000176" id="MAR11207" name="Metabolism (Formation/Degradation) of TyrPhetyr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11207" sboTerm="SBO:0000176" id="R_MAR11207" name="Metabolism (Formation/Degradation) of TyrPhetyr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -451146,7 +450015,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11207">
+            <rdf:Description rdf:about="#R_MAR11207">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/TYRPHETYRr"/>
@@ -451157,15 +450026,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM04052c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM04052c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02724c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03101c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02724c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03101c" stoichiometry="2" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11208" sboTerm="SBO:0000176" id="MAR11208" name="Metabolism (Formation/Degradation) of TyrThr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11208" sboTerm="SBO:0000176" id="R_MAR11208" name="Metabolism (Formation/Degradation) of TyrThr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -451173,7 +450042,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11208">
+            <rdf:Description rdf:about="#R_MAR11208">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/TYRTHRr"/>
@@ -451184,15 +450053,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM04053c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04053c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02993c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03101c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02993c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03101c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11209" sboTerm="SBO:0000176" id="MAR11209" name="Metabolism (Formation/Degradation) of TyrTrpPhe" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11209" sboTerm="SBO:0000176" id="R_MAR11209" name="Metabolism (Formation/Degradation) of TyrTrpPhe" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -451200,7 +450069,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11209">
+            <rdf:Description rdf:about="#R_MAR11209">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/TYRTRPPHEr"/>
@@ -451211,16 +450080,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM04054c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM04054c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02724c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03089c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03101c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02724c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03089c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03101c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11210" sboTerm="SBO:0000176" id="MAR11210" name="Metabolism (Formation/Degradation) of Tyrtyr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11210" sboTerm="SBO:0000176" id="R_MAR11210" name="Metabolism (Formation/Degradation) of Tyrtyr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -451228,7 +450097,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11210">
+            <rdf:Description rdf:about="#R_MAR11210">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/TYRTYRr"/>
@@ -451239,14 +450108,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM04055c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04055c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03101c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03101c" stoichiometry="2" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11211" sboTerm="SBO:0000176" id="MAR11211" name="Metabolism (Formation/Degradation) of TyrValMet" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11211" sboTerm="SBO:0000176" id="R_MAR11211" name="Metabolism (Formation/Degradation) of TyrValMet" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -451254,7 +450123,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11211">
+            <rdf:Description rdf:about="#R_MAR11211">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/TYRVALMETr"/>
@@ -451265,16 +450134,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM04056c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM04056c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02471c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03101c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03135c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02471c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03101c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03135c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11212" sboTerm="SBO:0000176" id="MAR11212" name="Metabolism (Formation/Degradation) of ValArgGly" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11212" sboTerm="SBO:0000176" id="R_MAR11212" name="Metabolism (Formation/Degradation) of ValArgGly" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -451282,7 +450151,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11212">
+            <rdf:Description rdf:about="#R_MAR11212">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/VALARGGLYr"/>
@@ -451293,16 +450162,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM04062c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM04062c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01365c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01986c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03135c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01365c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03135c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11213" sboTerm="SBO:0000176" id="MAR11213" name="Metabolism (Formation/Degradation) of ValHisAsn" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11213" sboTerm="SBO:0000176" id="R_MAR11213" name="Metabolism (Formation/Degradation) of ValHisAsn" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -451310,7 +450179,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11213">
+            <rdf:Description rdf:about="#R_MAR11213">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/VALHISASNr"/>
@@ -451321,16 +450190,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM04063c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM04063c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01369c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02125c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03135c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01369c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02125c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03135c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11214" sboTerm="SBO:0000176" id="MAR11214" name="Metabolism (Formation/Degradation) of ValLeuPhe" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11214" sboTerm="SBO:0000176" id="R_MAR11214" name="Metabolism (Formation/Degradation) of ValLeuPhe" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -451338,7 +450207,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11214">
+            <rdf:Description rdf:about="#R_MAR11214">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/VALLEUPHEr"/>
@@ -451349,16 +450218,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM04064c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM04064c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02360c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02724c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03135c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02360c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02724c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03135c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11215" sboTerm="SBO:0000176" id="MAR11215" name="Metabolism (Formation/Degradation) of ValLystyr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11215" sboTerm="SBO:0000176" id="R_MAR11215" name="Metabolism (Formation/Degradation) of ValLystyr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -451366,7 +450235,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11215">
+            <rdf:Description rdf:about="#R_MAR11215">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/VALLYSTYRr"/>
@@ -451377,16 +450246,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM04065c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM04065c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02426c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03101c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03135c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02426c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03101c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03135c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11216" sboTerm="SBO:0000176" id="MAR11216" name="Metabolism (Formation/Degradation) of ValPheArg" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11216" sboTerm="SBO:0000176" id="R_MAR11216" name="Metabolism (Formation/Degradation) of ValPheArg" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -451394,7 +450263,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11216">
+            <rdf:Description rdf:about="#R_MAR11216">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/VALPHEARGr"/>
@@ -451405,16 +450274,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM04066c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM04066c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01365c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02724c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03135c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01365c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02724c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03135c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11217" sboTerm="SBO:0000176" id="MAR11217" name="Metabolism (Formation/Degradation) of ValProTrp" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11217" sboTerm="SBO:0000176" id="R_MAR11217" name="Metabolism (Formation/Degradation) of ValProTrp" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -451422,7 +450291,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11217">
+            <rdf:Description rdf:about="#R_MAR11217">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/VALPROTRPr"/>
@@ -451433,16 +450302,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM04067c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM04067c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02770c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03089c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03135c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02770c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03089c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03135c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11218" sboTerm="SBO:0000176" id="MAR11218" name="Metabolism (Formation/Degradation) of ValSerArg" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11218" sboTerm="SBO:0000176" id="R_MAR11218" name="Metabolism (Formation/Degradation) of ValSerArg" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -451450,7 +450319,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11218">
+            <rdf:Description rdf:about="#R_MAR11218">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/VALSERARGr"/>
@@ -451461,16 +450330,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM04068c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM04068c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01365c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02896c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03135c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01365c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02896c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03135c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11219" sboTerm="SBO:0000176" id="MAR11219" name="Metabolism (Formation/Degradation) of ValTrpPhe" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11219" sboTerm="SBO:0000176" id="R_MAR11219" name="Metabolism (Formation/Degradation) of ValTrpPhe" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -451478,7 +450347,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11219">
+            <rdf:Description rdf:about="#R_MAR11219">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/VALTRPPHEr"/>
@@ -451489,16 +450358,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM04069c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM04069c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02724c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03089c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03135c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02724c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03089c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03135c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11220" sboTerm="SBO:0000176" id="MAR11220" name="Metabolism (Formation/Degradation) of ValTrpVal" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11220" sboTerm="SBO:0000176" id="R_MAR11220" name="Metabolism (Formation/Degradation) of ValTrpVal" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -451506,7 +450375,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11220">
+            <rdf:Description rdf:about="#R_MAR11220">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/VALTRPVALr"/>
@@ -451517,15 +450386,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM04070c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM04070c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03089c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03135c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03089c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03135c" stoichiometry="2" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11221" sboTerm="SBO:0000176" id="MAR11221" name="Metabolism (Formation/Degradation) of ValVal" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11221" sboTerm="SBO:0000176" id="R_MAR11221" name="Metabolism (Formation/Degradation) of ValVal" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -451533,7 +450402,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11221">
+            <rdf:Description rdf:about="#R_MAR11221">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/VALVALr"/>
@@ -451544,14 +450413,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM04071c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04071c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03135c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03135c" stoichiometry="2" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11222" sboTerm="SBO:0000176" id="MAR11222" name="Metabolism (Formation/Degradation) of TrpGlyAsp" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11222" sboTerm="SBO:0000176" id="R_MAR11222" name="Metabolism (Formation/Degradation) of TrpGlyAsp" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -451559,7 +450428,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11222">
+            <rdf:Description rdf:about="#R_MAR11222">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/TRPGLYASPr"/>
@@ -451570,16 +450439,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM04016c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM04016c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01370c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01986c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03089c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01370c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03089c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11223" sboTerm="SBO:0000185" id="MAR11223" name="Transport of Homovanillate by Oat3" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11223" sboTerm="SBO:0000185" id="R_MAR11223" name="Transport of Homovanillate by Oat3" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -451588,7 +450457,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11223">
+            <rdf:Description rdf:about="#R_MAR11223">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/HOMOVALte"/>
@@ -451599,18 +450468,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01306e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02137c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01306e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02137c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01306c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02137e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01306c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02137e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG3168"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR11224" sboTerm="SBO:0000176" id="MAR11224" name="Formation of Tyraminium" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11224" sboTerm="SBO:0000176" id="R_MAR11224" name="Formation of Tyraminium" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -451619,7 +450488,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11224">
+            <rdf:Description rdf:about="#R_MAR11224">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/TYMc"/>
@@ -451630,18 +450499,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02718c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02718c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03099c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03099c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11225" sboTerm="SBO:0000176" id="MAR11225" name="Formation of Dopamine" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11225" sboTerm="SBO:0000176" id="R_MAR11225" name="Formation of Dopamine" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -451650,7 +450519,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11225">
+            <rdf:Description rdf:about="#R_MAR11225">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/DOPAc"/>
@@ -451661,18 +450530,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03099c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03099c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01736c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01736c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11226" sboTerm="SBO:0000185" id="MAR11226" name="Transport of 2-Palmitoylglycerophosphocholine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11226" sboTerm="SBO:0000185" id="R_MAR11226" name="Transport of 2-Palmitoylglycerophosphocholine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -451680,7 +450549,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11226">
+            <rdf:Description rdf:about="#R_MAR11226">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PCHOL2PALM_HSte"/>
@@ -451691,13 +450560,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03807e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03807e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03807c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03807c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11227" sboTerm="SBO:0000185" id="MAR11227" name="Transport of 1-Gamma-Linolenoyl-Cholesterol, Cholesterol-Ester (18:3, Delta 6, 9, 12)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11227" sboTerm="SBO:0000185" id="R_MAR11227" name="Transport of 1-Gamma-Linolenoyl-Cholesterol, Cholesterol-Ester (18:3, Delta 6, 9, 12)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -451705,7 +450574,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11227">
+            <rdf:Description rdf:about="#R_MAR11227">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/XOLEST183te"/>
@@ -451716,13 +450585,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM04077e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04077e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM04077c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04077c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11228" sboTerm="SBO:0000185" id="MAR11228" name="Transport of 1-Gamma-Linolenoyl-Cholesterol, Cholesterol-Ester (18:2, Delta 9, 12)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11228" sboTerm="SBO:0000185" id="R_MAR11228" name="Transport of 1-Gamma-Linolenoyl-Cholesterol, Cholesterol-Ester (18:2, Delta 9, 12)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -451730,7 +450599,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11228">
+            <rdf:Description rdf:about="#R_MAR11228">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/XOLEST182_HSte"/>
@@ -451741,13 +450610,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM04076e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04076e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM04076c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04076c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11229" sboTerm="SBO:0000185" id="MAR11229" name="Transport of 1-Vaccenoyl-Cholesterol, Cholesterol-Ester (18:1, Delta 11)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11229" sboTerm="SBO:0000185" id="R_MAR11229" name="Transport of 1-Vaccenoyl-Cholesterol, Cholesterol-Ester (18:1, Delta 11)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -451755,7 +450624,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11229">
+            <rdf:Description rdf:about="#R_MAR11229">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/XOLEST181_HSte"/>
@@ -451765,13 +450634,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM04075e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04075e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM04075c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04075c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11230" sboTerm="SBO:0000185" id="MAR11230" name="Transport of 1-Timnodnoyl-Cholesterol, Cholesterol-Ester (20:5, Delta 5, 8, 11, 14, 17)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11230" sboTerm="SBO:0000185" id="R_MAR11230" name="Transport of 1-Timnodnoyl-Cholesterol, Cholesterol-Ester (20:5, Delta 5, 8, 11, 14, 17)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -451779,7 +450648,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11230">
+            <rdf:Description rdf:about="#R_MAR11230">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/XOLEST205_HSte"/>
@@ -451790,13 +450659,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM04079e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04079e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM04079c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04079c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11231" sboTerm="SBO:0000185" id="MAR11231" name="Transport of Cholesteryl Arachidonate, Cholesterol-Ester (20:4, Delta 5, 8, 11, 14)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11231" sboTerm="SBO:0000185" id="R_MAR11231" name="Transport of Cholesteryl Arachidonate, Cholesterol-Ester (20:4, Delta 5, 8, 11, 14)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -451804,7 +450673,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11231">
+            <rdf:Description rdf:about="#R_MAR11231">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/XOLEST204_HSte"/>
@@ -451814,13 +450683,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM04078e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04078e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM04078c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04078c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11232" sboTerm="SBO:0000185" id="MAR11232" name="Transport of Cholesteryl Docosahexanoate, Cholesterol-Ester (22:6, Delta 4, 7, 10, 13, 16, 19)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11232" sboTerm="SBO:0000185" id="R_MAR11232" name="Transport of Cholesteryl Docosahexanoate, Cholesterol-Ester (22:6, Delta 4, 7, 10, 13, 16, 19)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -451828,7 +450697,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11232">
+            <rdf:Description rdf:about="#R_MAR11232">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/XOLEST226_HSte"/>
@@ -451839,13 +450708,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM04080e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04080e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM04080c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04080c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11233" sboTerm="SBO:0000185" id="MAR11233" name="Transport of 1-Docosatetraenoyglycerophosphoethanolamine (22:4, Delta 7, 10, 13, 16)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11233" sboTerm="SBO:0000185" id="R_MAR11233" name="Transport of 1-Docosatetraenoyglycerophosphoethanolamine (22:4, Delta 7, 10, 13, 16)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -451853,7 +450722,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11233">
+            <rdf:Description rdf:about="#R_MAR11233">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PE224_HSte"/>
@@ -451864,13 +450733,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03845e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03845e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03845c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03845c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11234" sboTerm="SBO:0000185" id="MAR11234" name="Transport of Lysopc A C26:1 (Delta 5)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11234" sboTerm="SBO:0000185" id="R_MAR11234" name="Transport of Lysopc A C26:1 (Delta 5)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -451878,7 +450747,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11234">
+            <rdf:Description rdf:about="#R_MAR11234">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PCHOLN261_HSte"/>
@@ -451889,13 +450758,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03829e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03829e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03829c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03829c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11235" sboTerm="SBO:0000185" id="MAR11235" name="Transport of Lysopc A C28:1 (Delta 5)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11235" sboTerm="SBO:0000185" id="R_MAR11235" name="Transport of Lysopc A C28:1 (Delta 5)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -451903,7 +450772,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11235">
+            <rdf:Description rdf:about="#R_MAR11235">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PCHOLN281_HSte"/>
@@ -451914,13 +450783,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03830e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03830e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03830c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03830c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11236" sboTerm="SBO:0000185" id="MAR11236" name="Transport of Lysopc A C28:0" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11236" sboTerm="SBO:0000185" id="R_MAR11236" name="Transport of Lysopc A C28:0" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -451928,7 +450797,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11236">
+            <rdf:Description rdf:about="#R_MAR11236">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PCHOLN28_HSte"/>
@@ -451939,23 +450808,27 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03831e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03831e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03831c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03831c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11237" sboTerm="SBO:0000185" id="MAR11237" name="Transport of 3-Hydroxy Butyryl Carnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11237" sboTerm="SBO:0000185" id="R_MAR11237" name="Transport of 3-Hydroxy Butyryl Carnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
+            <p>AUTHORS: PMID:11489939;PMID:17347912;PMID:20157782</p>
           </body>
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11237">
+            <rdf:Description rdf:about="#R_MAR11237">
               <bqbiol:is>
                 <rdf:Bag>
+                  <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/BCRNe"/>
+                  <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR96226"/>
+                  <rdf:li rdf:resource="https://identifiers.org/vmhreaction/BCRNe"/>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/3BCRNtr"/>
                 </rdf:Bag>
               </bqbiol:is>
@@ -451963,23 +450836,27 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03201e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03201e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03201c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03201c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11238" sboTerm="SBO:0000185" id="MAR11238" name="Transport of 3-Hydroxydodecanoylcarnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11238" sboTerm="SBO:0000185" id="R_MAR11238" name="Transport of 3-Hydroxydodecanoylcarnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
+            <p>AUTHORS: PMID:15535801</p>
           </body>
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11238">
+            <rdf:Description rdf:about="#R_MAR11238">
               <bqbiol:is>
                 <rdf:Bag>
+                  <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/DDCRNe"/>
+                  <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR97212"/>
+                  <rdf:li rdf:resource="https://identifiers.org/vmhreaction/DDCRNe"/>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/3DDCRNtr"/>
                 </rdf:Bag>
               </bqbiol:is>
@@ -451987,23 +450864,27 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03202e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03202e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03202c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03202c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11239" sboTerm="SBO:0000185" id="MAR11239" name="Transport of 3-Hydroxydecanoylcarnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11239" sboTerm="SBO:0000185" id="R_MAR11239" name="Transport of 3-Hydroxydecanoylcarnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
+            <p>AUTHORS: PMID:19720082</p>
           </body>
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11239">
+            <rdf:Description rdf:about="#R_MAR11239">
               <bqbiol:is>
                 <rdf:Bag>
+                  <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/DECCRNe"/>
+                  <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR97224"/>
+                  <rdf:li rdf:resource="https://identifiers.org/vmhreaction/DECCRNe"/>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/3DECCRNtr"/>
                 </rdf:Bag>
               </bqbiol:is>
@@ -452011,23 +450892,26 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03204e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03204e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03204c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03204c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11240" sboTerm="SBO:0000185" id="MAR11240" name="Transport of 3-Hydroxyhexadecenoylcarnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11240" sboTerm="SBO:0000185" id="R_MAR11240" name="Transport of 3-Hydroxyhexadecenoylcarnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
+            <p>AUTHORS: PMID:19720082</p>
           </body>
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11240">
+            <rdf:Description rdf:about="#R_MAR11240">
               <bqbiol:is>
                 <rdf:Bag>
+                  <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/HEDCECRNe"/>
+                  <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HEDCECRNe"/>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/3HDECECRNtr"/>
                 </rdf:Bag>
               </bqbiol:is>
@@ -452035,23 +450919,27 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03217e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03217e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03217c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03217c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11241" sboTerm="SBO:0000185" id="MAR11241" name="Transport of 3-Hydroxyhexadecanoylcarnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11241" sboTerm="SBO:0000185" id="R_MAR11241" name="Transport of 3-Hydroxyhexadecanoylcarnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
+            <p>AUTHORS: PMID:19720082</p>
           </body>
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11241">
+            <rdf:Description rdf:about="#R_MAR11241">
               <bqbiol:is>
                 <rdf:Bag>
+                  <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/HEXDCRNe"/>
+                  <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR100618"/>
+                  <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HEXDCRNe"/>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/3HEXDCRNtr"/>
                 </rdf:Bag>
               </bqbiol:is>
@@ -452059,23 +450947,26 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03219e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03219e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03219c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03219c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11242" sboTerm="SBO:0000185" id="MAR11242" name="Transport of 3-Hydroxy-Isovaleryl Carnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11242" sboTerm="SBO:0000185" id="R_MAR11242" name="Transport of 3-Hydroxy-Isovaleryl Carnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
+            <p>AUTHORS: PMID:19720082</p>
           </body>
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11242">
+            <rdf:Description rdf:about="#R_MAR11242">
               <bqbiol:is>
                 <rdf:Bag>
+                  <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/HIVCRNe"/>
+                  <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HIVCRNe"/>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/3IVCRNtr"/>
                 </rdf:Bag>
               </bqbiol:is>
@@ -452083,13 +450974,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03243e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03243e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03243c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03243c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11243" sboTerm="SBO:0000185" id="MAR11243" name="Transport of 3-Hydroxyoctadecadienoylcarnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11243" sboTerm="SBO:0000185" id="R_MAR11243" name="Transport of 3-Hydroxyoctadecadienoylcarnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -452097,9 +450988,11 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11243">
+            <rdf:Description rdf:about="#R_MAR11243">
               <bqbiol:is>
                 <rdf:Bag>
+                  <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/HOCTDEC2CRNe"/>
+                  <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HOCTDEC2CRNe"/>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/3OCTDEC2CRNtr"/>
                 </rdf:Bag>
               </bqbiol:is>
@@ -452107,23 +451000,26 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03250e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03250e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03250c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03250c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11244" sboTerm="SBO:0000185" id="MAR11244" name="Transport of 3-Hydroxyoctadecanoyl Carnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11244" sboTerm="SBO:0000185" id="R_MAR11244" name="Transport of 3-Hydroxyoctadecanoyl Carnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
+            <p>AUTHORS: PMID:19720082</p>
           </body>
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11244">
+            <rdf:Description rdf:about="#R_MAR11244">
               <bqbiol:is>
                 <rdf:Bag>
+                  <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/HOCTDECCRNe"/>
+                  <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HOCTDECCRNe"/>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/3OCTDECCRNtr"/>
                 </rdf:Bag>
               </bqbiol:is>
@@ -452131,23 +451027,26 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03251e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03251e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03251c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03251c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11245" sboTerm="SBO:0000185" id="MAR11245" name="Transport of 3-Hydroxy-Octadecenoyl Carnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11245" sboTerm="SBO:0000185" id="R_MAR11245" name="Transport of 3-Hydroxy-Octadecenoyl Carnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
+            <p>AUTHORS: PMID:19720082</p>
           </body>
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11245">
+            <rdf:Description rdf:about="#R_MAR11245">
               <bqbiol:is>
                 <rdf:Bag>
+                  <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/OCTDECE1CRNe"/>
+                  <rdf:li rdf:resource="https://identifiers.org/vmhreaction/OCTDECE1CRNe"/>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/3OCTDECE1CRNtr"/>
                 </rdf:Bag>
               </bqbiol:is>
@@ -452155,23 +451054,27 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03253e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03253e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03253c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03253c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11246" sboTerm="SBO:0000185" id="MAR11246" name="Transport of 3-Hydroxy-Tetradecanoyl Carnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11246" sboTerm="SBO:0000185" id="R_MAR11246" name="Transport of 3-Hydroxy-Tetradecanoyl Carnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
+            <p>AUTHORS: PMID:20583174</p>
           </body>
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11246">
+            <rdf:Description rdf:about="#R_MAR11246">
               <bqbiol:is>
                 <rdf:Bag>
+                  <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/HTDCRNe"/>
+                  <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR100744"/>
+                  <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HTDCRNe"/>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/3TDCRNtr"/>
                 </rdf:Bag>
               </bqbiol:is>
@@ -452179,23 +451082,26 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03262e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03262e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03262c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03262c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11247" sboTerm="SBO:0000185" id="MAR11247" name="Transport of 3-Hydroxy Tetradecenoyl-7-Carnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11247" sboTerm="SBO:0000185" id="R_MAR11247" name="Transport of 3-Hydroxy Tetradecenoyl-7-Carnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
+            <p>AUTHORS: PMID:21281499</p>
           </body>
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11247">
+            <rdf:Description rdf:about="#R_MAR11247">
               <bqbiol:is>
                 <rdf:Bag>
+                  <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/C141OHe"/>
+                  <rdf:li rdf:resource="https://identifiers.org/vmhreaction/C141OHe"/>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/3TETD7ECOACRNtr"/>
                 </rdf:Bag>
               </bqbiol:is>
@@ -452203,23 +451109,26 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03264e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03264e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03264c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03264c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11248" sboTerm="SBO:0000185" id="MAR11248" name="Transport of 3-Hydroxy Trans7, 10-Hexadecadienoyl Carnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11248" sboTerm="SBO:0000185" id="R_MAR11248" name="Transport of 3-Hydroxy Trans7, 10-Hexadecadienoyl Carnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
+            <p>AUTHORS: PMID:21281499</p>
           </body>
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11248">
+            <rdf:Description rdf:about="#R_MAR11248">
               <bqbiol:is>
                 <rdf:Bag>
+                  <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/C162OHe"/>
+                  <rdf:li rdf:resource="https://identifiers.org/vmhreaction/C162OHe"/>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/3THEXDDCOACRNtr"/>
                 </rdf:Bag>
               </bqbiol:is>
@@ -452227,23 +451136,26 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03266e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03266e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03266c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03266c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11249" sboTerm="SBO:0000185" id="MAR11249" name="Transport of 3-Hydroxy Trans5, 8Tetradecadienoyl Carnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11249" sboTerm="SBO:0000185" id="R_MAR11249" name="Transport of 3-Hydroxy Trans5, 8Tetradecadienoyl Carnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
+            <p>AUTHORS: PMID:21281499</p>
           </body>
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11249">
+            <rdf:Description rdf:about="#R_MAR11249">
               <bqbiol:is>
                 <rdf:Bag>
+                  <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/C142OHe"/>
+                  <rdf:li rdf:resource="https://identifiers.org/vmhreaction/C142OHe"/>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/3TTETDDCOACRNtr"/>
                 </rdf:Bag>
               </bqbiol:is>
@@ -452251,13 +451163,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03268e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03268e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03268c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03268c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11250" sboTerm="SBO:0000185" id="MAR11250" name="Transport of Acetyl Carnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11250" sboTerm="SBO:0000185" id="R_MAR11250" name="Transport of Acetyl Carnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -452265,7 +451177,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11250">
+            <rdf:Description rdf:about="#R_MAR11250">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ACRNtr"/>
@@ -452276,23 +451188,26 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02634e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02634e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02634c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02634c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11251" sboTerm="SBO:0000185" id="MAR11251" name="Transport of Decenoyl Carnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11251" sboTerm="SBO:0000185" id="R_MAR11251" name="Transport of Decenoyl Carnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
+            <p>AUTHORS: PMID:19720082</p>
           </body>
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11251">
+            <rdf:Description rdf:about="#R_MAR11251">
               <bqbiol:is>
                 <rdf:Bag>
+                  <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/C101CRNe"/>
+                  <rdf:li rdf:resource="https://identifiers.org/vmhreaction/C101CRNe"/>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/C101CRNtr"/>
                 </rdf:Bag>
               </bqbiol:is>
@@ -452300,23 +451215,26 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03487e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03487e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03487c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03487c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11252" sboTerm="SBO:0000185" id="MAR11252" name="Transport of Decanoyl Carnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11252" sboTerm="SBO:0000185" id="R_MAR11252" name="Transport of Decanoyl Carnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
+            <p>AUTHORS: PMID:19720082</p>
           </body>
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11252">
+            <rdf:Description rdf:about="#R_MAR11252">
               <bqbiol:is>
                 <rdf:Bag>
+                  <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/C10CRNe"/>
+                  <rdf:li rdf:resource="https://identifiers.org/vmhreaction/C10CRNe"/>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/C10CRNtr"/>
                 </rdf:Bag>
               </bqbiol:is>
@@ -452324,23 +451242,27 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03488e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03488e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03488c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03488c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11253" sboTerm="SBO:0000185" id="MAR11253" name="Transport of Sebacoyl Carnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11253" sboTerm="SBO:0000185" id="R_MAR11253" name="Transport of Sebacoyl Carnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
+            <p>AUTHORS: PMID:3119938;PMID:6959231</p>
           </body>
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11253">
+            <rdf:Description rdf:about="#R_MAR11253">
               <bqbiol:is>
                 <rdf:Bag>
+                  <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/C10DCe"/>
+                  <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR96374"/>
+                  <rdf:li rdf:resource="https://identifiers.org/vmhreaction/C10DCe"/>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/C10DCtr"/>
                 </rdf:Bag>
               </bqbiol:is>
@@ -452348,23 +451270,26 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03489e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03489e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03489c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03489c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11254" sboTerm="SBO:0000185" id="MAR11254" name="Transport of Dodecanedioyl Carnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11254" sboTerm="SBO:0000185" id="R_MAR11254" name="Transport of Dodecanedioyl Carnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
+            <p>AUTHORS: PMID:16146704</p>
           </body>
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11254">
+            <rdf:Description rdf:about="#R_MAR11254">
               <bqbiol:is>
                 <rdf:Bag>
+                  <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/C12DCe"/>
+                  <rdf:li rdf:resource="https://identifiers.org/vmhreaction/C12DCe"/>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/C12DCtr"/>
                 </rdf:Bag>
               </bqbiol:is>
@@ -452372,23 +451297,26 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03490e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03490e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03490c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03490c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11255" sboTerm="SBO:0000185" id="MAR11255" name="Transport of Hexadecanedioic Acid Mono-L-Carnitine Ester" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11255" sboTerm="SBO:0000185" id="R_MAR11255" name="Transport of Hexadecanedioic Acid Mono-L-Carnitine Ester" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
+            <p>AUTHORS: PMID:2064600</p>
           </body>
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11255">
+            <rdf:Description rdf:about="#R_MAR11255">
               <bqbiol:is>
                 <rdf:Bag>
+                  <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/C16DCe"/>
+                  <rdf:li rdf:resource="https://identifiers.org/vmhreaction/C16DCe"/>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/C16DCtr"/>
                 </rdf:Bag>
               </bqbiol:is>
@@ -452396,23 +451324,26 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03493e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03493e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03493c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03493c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11256" sboTerm="SBO:0000185" id="MAR11256" name="Transport of Malonyl Carnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11256" sboTerm="SBO:0000185" id="R_MAR11256" name="Transport of Malonyl Carnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
+            <p>AUTHORS: PMID:19720082</p>
           </body>
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11256">
+            <rdf:Description rdf:about="#R_MAR11256">
               <bqbiol:is>
                 <rdf:Bag>
+                  <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/C3DCe"/>
+                  <rdf:li rdf:resource="https://identifiers.org/vmhreaction/C3DCe"/>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/C3DCtr"/>
                 </rdf:Bag>
               </bqbiol:is>
@@ -452420,23 +451351,28 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03494e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03494e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03494c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03494c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11257" sboTerm="SBO:0000185" id="MAR11257" name="Transport of Butyryl Carnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11257" sboTerm="SBO:0000185" id="R_MAR11257" name="Transport of Butyryl Carnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
+            <p>AUTHORS: PMID:19720082</p>
           </body>
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11257">
+            <rdf:Description rdf:about="#R_MAR11257">
               <bqbiol:is>
                 <rdf:Bag>
+                  <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.62"/>
+                  <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/C4CRNe"/>
+                  <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR96415"/>
+                  <rdf:li rdf:resource="https://identifiers.org/vmhreaction/C4CRNe"/>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/C4CRNtr"/>
                 </rdf:Bag>
               </bqbiol:is>
@@ -452444,23 +451380,27 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02635e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02635e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02635c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02635c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11258" sboTerm="SBO:0000185" id="MAR11258" name="Transport of Succinyl Carnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11258" sboTerm="SBO:0000185" id="R_MAR11258" name="Transport of Succinyl Carnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
+            <p>AUTHORS: PMID:9266369</p>
           </body>
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11258">
+            <rdf:Description rdf:about="#R_MAR11258">
               <bqbiol:is>
                 <rdf:Bag>
+                  <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/C4DCe"/>
+                  <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR96416"/>
+                  <rdf:li rdf:resource="https://identifiers.org/vmhreaction/C4DCe"/>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/C4DCtr"/>
                 </rdf:Bag>
               </bqbiol:is>
@@ -452468,23 +451408,27 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03495e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03495e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03495c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03495c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11259" sboTerm="SBO:0000185" id="MAR11259" name="Transport of Tiglyl Carnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11259" sboTerm="SBO:0000185" id="R_MAR11259" name="Transport of Tiglyl Carnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
+            <p>AUTHORS: PMID:20157782</p>
           </body>
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11259">
+            <rdf:Description rdf:about="#R_MAR11259">
               <bqbiol:is>
                 <rdf:Bag>
+                  <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/TIGCRNe"/>
+                  <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR104864"/>
+                  <rdf:li rdf:resource="https://identifiers.org/vmhreaction/TIGCRNe"/>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/C51CRNtr"/>
                 </rdf:Bag>
               </bqbiol:is>
@@ -452492,23 +451436,26 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03496e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03496e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03496c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03496c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11260" sboTerm="SBO:0000185" id="MAR11260" name="Transport of Glutaryl Carnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11260" sboTerm="SBO:0000185" id="R_MAR11260" name="Transport of Glutaryl Carnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
+            <p>AUTHORS: PMID:19720082</p>
           </body>
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11260">
+            <rdf:Description rdf:about="#R_MAR11260">
               <bqbiol:is>
                 <rdf:Bag>
+                  <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/C5DCe"/>
+                  <rdf:li rdf:resource="https://identifiers.org/vmhreaction/C5DCe"/>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/C5DCtr"/>
                 </rdf:Bag>
               </bqbiol:is>
@@ -452516,23 +451463,26 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03497e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03497e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03497c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03497c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11261" sboTerm="SBO:0000185" id="MAR11261" name="Transport of Hexanoyl Carnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11261" sboTerm="SBO:0000185" id="R_MAR11261" name="Transport of Hexanoyl Carnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
+            <p>AUTHORS: PMID:19720082</p>
           </body>
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11261">
+            <rdf:Description rdf:about="#R_MAR11261">
               <bqbiol:is>
                 <rdf:Bag>
+                  <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/C6CRNe"/>
+                  <rdf:li rdf:resource="https://identifiers.org/vmhreaction/C6CRNe"/>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/C6CRNtr"/>
                 </rdf:Bag>
               </bqbiol:is>
@@ -452540,23 +451490,27 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03498e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03498e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03498c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03498c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11262" sboTerm="SBO:0000185" id="MAR11262" name="Transport of Adipoyl Carnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11262" sboTerm="SBO:0000185" id="R_MAR11262" name="Transport of Adipoyl Carnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
+            <p>AUTHORS: PMID:19720082</p>
           </body>
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11262">
+            <rdf:Description rdf:about="#R_MAR11262">
               <bqbiol:is>
                 <rdf:Bag>
+                  <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/C6DCe"/>
+                  <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR96424"/>
+                  <rdf:li rdf:resource="https://identifiers.org/vmhreaction/C6DCe"/>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/C6DCtr"/>
                 </rdf:Bag>
               </bqbiol:is>
@@ -452564,23 +451518,26 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03499e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03499e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03499c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03499c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11263" sboTerm="SBO:0000185" id="MAR11263" name="Transport of Octenoyl Carnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11263" sboTerm="SBO:0000185" id="R_MAR11263" name="Transport of Octenoyl Carnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
+            <p>AUTHORS: PMID:12828998</p>
           </body>
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11263">
+            <rdf:Description rdf:about="#R_MAR11263">
               <bqbiol:is>
                 <rdf:Bag>
+                  <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/C81CRNe"/>
+                  <rdf:li rdf:resource="https://identifiers.org/vmhreaction/C81CRNe"/>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/C81CRNtr"/>
                 </rdf:Bag>
               </bqbiol:is>
@@ -452588,23 +451545,27 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03501e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03501e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03501c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03501c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11264" sboTerm="SBO:0000185" id="MAR11264" name="Transport of Octanoyl Carnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11264" sboTerm="SBO:0000185" id="R_MAR11264" name="Transport of Octanoyl Carnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
+            <p>AUTHORS: PMID:19720082</p>
           </body>
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11264">
+            <rdf:Description rdf:about="#R_MAR11264">
               <bqbiol:is>
                 <rdf:Bag>
+                  <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/C8CRNe"/>
+                  <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR96429"/>
+                  <rdf:li rdf:resource="https://identifiers.org/vmhreaction/C8CRNe"/>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/C8CRNtr"/>
                 </rdf:Bag>
               </bqbiol:is>
@@ -452612,23 +451573,27 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02409e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02409e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02409c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02409c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11265" sboTerm="SBO:0000185" id="MAR11265" name="Transport of Suberyl Carnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11265" sboTerm="SBO:0000185" id="R_MAR11265" name="Transport of Suberyl Carnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
+            <p>AUTHORS: PMID:6959231</p>
           </body>
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11265">
+            <rdf:Description rdf:about="#R_MAR11265">
               <bqbiol:is>
                 <rdf:Bag>
+                  <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/C8DCe"/>
+                  <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR96431"/>
+                  <rdf:li rdf:resource="https://identifiers.org/vmhreaction/C8DCe"/>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/C8DCtr"/>
                 </rdf:Bag>
               </bqbiol:is>
@@ -452636,23 +451601,26 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03502e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03502e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03502c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03502c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11266" sboTerm="SBO:0000185" id="MAR11266" name="Transport of Lauroyl Carnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11266" sboTerm="SBO:0000185" id="R_MAR11266" name="Transport of Lauroyl Carnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
+            <p>AUTHORS: PMID:12828998;PMID:20026021;PMID:21463612;PMID:9498103</p>
           </body>
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11266">
+            <rdf:Description rdf:about="#R_MAR11266">
               <bqbiol:is>
                 <rdf:Bag>
+                  <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/DDECCRNe"/>
+                  <rdf:li rdf:resource="https://identifiers.org/vmhreaction/DDECCRNe"/>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/DDECCRNtr"/>
                 </rdf:Bag>
               </bqbiol:is>
@@ -452660,23 +451628,26 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03540e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03540e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03540c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03540c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11267" sboTerm="SBO:0000185" id="MAR11267" name="Transport of Dodecenoyl Carnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11267" sboTerm="SBO:0000185" id="R_MAR11267" name="Transport of Dodecenoyl Carnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
+            <p>AUTHORS: PMID:20026021</p>
           </body>
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11267">
+            <rdf:Description rdf:about="#R_MAR11267">
               <bqbiol:is>
                 <rdf:Bag>
+                  <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/DDECE1CRNe"/>
+                  <rdf:li rdf:resource="https://identifiers.org/vmhreaction/DDECE1CRNe"/>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/DDECE1CRNtr"/>
                 </rdf:Bag>
               </bqbiol:is>
@@ -452684,23 +451655,26 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03541e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03541e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03541c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03541c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11268" sboTerm="SBO:0000185" id="MAR11268" name="Transport of Decadienoyl Carnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11268" sboTerm="SBO:0000185" id="R_MAR11268" name="Transport of Decadienoyl Carnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
+            <p>AUTHORS: PMID:21215187</p>
           </body>
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11268">
+            <rdf:Description rdf:about="#R_MAR11268">
               <bqbiol:is>
                 <rdf:Bag>
+                  <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/DECDICRNe"/>
+                  <rdf:li rdf:resource="https://identifiers.org/vmhreaction/DECDICRNe"/>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/DECDICRNtr"/>
                 </rdf:Bag>
               </bqbiol:is>
@@ -452708,13 +451682,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03544e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03544e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03544c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03544c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11270" sboTerm="SBO:0000185" id="MAR11270" name="Transport of Palmitoleoyl-Carnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11270" sboTerm="SBO:0000185" id="R_MAR11270" name="Transport of Palmitoleoyl-Carnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -452722,7 +451696,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11270">
+            <rdf:Description rdf:about="#R_MAR11270">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/HDCECRNtr"/>
@@ -452733,23 +451707,27 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02676e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02676e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02676c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02676c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11271" sboTerm="SBO:0000185" id="MAR11271" name="Transport of Isovaleryl Carnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11271" sboTerm="SBO:0000185" id="R_MAR11271" name="Transport of Isovaleryl Carnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
+            <p>AUTHORS: PMID:19720082</p>
           </body>
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11271">
+            <rdf:Description rdf:about="#R_MAR11271">
               <bqbiol:is>
                 <rdf:Bag>
+                  <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/IVCRNe"/>
+                  <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR100895"/>
+                  <rdf:li rdf:resource="https://identifiers.org/vmhreaction/IVCRNe"/>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/IVCRNtr"/>
                 </rdf:Bag>
               </bqbiol:is>
@@ -452757,13 +451735,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03706e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03706e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03706c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03706c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11272" sboTerm="SBO:0000185" id="MAR11272" name="Transport of 6Z,9Z-Octadecadienoylcarnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11272" sboTerm="SBO:0000185" id="R_MAR11272" name="Transport of 6Z,9Z-Octadecadienoylcarnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -452771,7 +451749,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11272">
+            <rdf:Description rdf:about="#R_MAR11272">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/LNELDCCRNtr"/>
@@ -452782,13 +451760,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00105e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00105e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00105c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00105c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11274" sboTerm="SBO:0000185" id="MAR11274" name="Transport of L-Oleoylcarnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11274" sboTerm="SBO:0000185" id="R_MAR11274" name="Transport of L-Oleoylcarnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -452796,7 +451774,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11274">
+            <rdf:Description rdf:about="#R_MAR11274">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ODECRNtr"/>
@@ -452807,13 +451785,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02639e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02639e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02639c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02639c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11276" sboTerm="SBO:0000185" id="MAR11276" name="Transport of L-Palmitoylcarnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11276" sboTerm="SBO:0000185" id="R_MAR11276" name="Transport of L-Palmitoylcarnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -452821,7 +451799,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11276">
+            <rdf:Description rdf:about="#R_MAR11276">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PMTCRNtr"/>
@@ -452832,13 +451810,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02411e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02411e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02411c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02411c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11277" sboTerm="SBO:0000185" id="MAR11277" name="Transport of O-Octadecanoyl-R-Carnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11277" sboTerm="SBO:0000185" id="R_MAR11277" name="Transport of O-Octadecanoyl-R-Carnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -452846,7 +451824,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11277">
+            <rdf:Description rdf:about="#R_MAR11277">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/STCRNtr"/>
@@ -452857,23 +451835,26 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02940e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02940e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02940c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02940c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11278" sboTerm="SBO:0000185" id="MAR11278" name="Transport of Tetradecadienoyl Carnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11278" sboTerm="SBO:0000185" id="R_MAR11278" name="Transport of Tetradecadienoyl Carnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
+            <p>AUTHORS: PMID:19720082</p>
           </body>
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11278">
+            <rdf:Description rdf:about="#R_MAR11278">
               <bqbiol:is>
                 <rdf:Bag>
+                  <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/TETDEC2CRNe"/>
+                  <rdf:li rdf:resource="https://identifiers.org/vmhreaction/TETDEC2CRNe"/>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/TETDEC2CRntr"/>
                 </rdf:Bag>
               </bqbiol:is>
@@ -452881,23 +451862,26 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03975e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03975e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03975c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03975c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11279" sboTerm="SBO:0000185" id="MAR11279" name="Transport of Tetradecenoyl Carnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11279" sboTerm="SBO:0000185" id="R_MAR11279" name="Transport of Tetradecenoyl Carnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
+            <p>AUTHORS: PMID:19720082</p>
           </body>
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11279">
+            <rdf:Description rdf:about="#R_MAR11279">
               <bqbiol:is>
                 <rdf:Bag>
+                  <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/TETDECE1CRNe"/>
+                  <rdf:li rdf:resource="https://identifiers.org/vmhreaction/TETDECE1CRNe"/>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/TETDECE1CRNtr"/>
                 </rdf:Bag>
               </bqbiol:is>
@@ -452905,23 +451889,27 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03980e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03980e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03980c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03980c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11280" sboTerm="SBO:0000185" id="MAR11280" name="Transport of Tetradecanoyl Carnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11280" sboTerm="SBO:0000185" id="R_MAR11280" name="Transport of Tetradecanoyl Carnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
+            <p>AUTHORS: PMID:19720082</p>
           </body>
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11280">
+            <rdf:Description rdf:about="#R_MAR11280">
               <bqbiol:is>
                 <rdf:Bag>
+                  <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/TDCRNe"/>
+                  <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR104751"/>
+                  <rdf:li rdf:resource="https://identifiers.org/vmhreaction/TDCRNe"/>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/TTDCRNtr"/>
                 </rdf:Bag>
               </bqbiol:is>
@@ -452929,13 +451917,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02974e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02974e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02974c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02974c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11281" sboTerm="SBO:0000627" id="MAR11281" name="Exchange of Sphingomyelin" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11281" sboTerm="SBO:0000627" id="R_MAR11281" name="Exchange of Sphingomyelin" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -452943,7 +451931,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11281">
+            <rdf:Description rdf:about="#R_MAR11281">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_sphmyln_hs_e"/>
@@ -452954,10 +451942,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02908e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02908e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR11282" sboTerm="SBO:0000185" id="MAR11282" name="Intracellular Transport of 1-Gamma-Linolenoyl-Cholesterol, Cholesterol-Ester (18:3, Delta 6, 9, 12)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11282" sboTerm="SBO:0000185" id="R_MAR11282" name="Intracellular Transport of 1-Gamma-Linolenoyl-Cholesterol, Cholesterol-Ester (18:3, Delta 6, 9, 12)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -452965,7 +451953,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11282">
+            <rdf:Description rdf:about="#R_MAR11282">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/XOLEST183tl"/>
@@ -452976,13 +451964,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM04077c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04077c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM04077l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04077l" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11283" sboTerm="SBO:0000185" id="MAR11283" name="Intracellular Transport of 1-Linoleoyl-Cholesterol, Cholesterol-Ester (18:2, Delta 9, 12)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11283" sboTerm="SBO:0000185" id="R_MAR11283" name="Intracellular Transport of 1-Linoleoyl-Cholesterol, Cholesterol-Ester (18:2, Delta 9, 12)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -452990,7 +451978,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11283">
+            <rdf:Description rdf:about="#R_MAR11283">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/XOLEST182tl"/>
@@ -453001,13 +451989,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM04076c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04076c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM04076l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04076l" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11284" sboTerm="SBO:0000185" id="MAR11284" name="Intracellular Transport of 1-Vaccenoyl-Cholesterol, Cholesterol-Ester (18:1, Delta 11)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11284" sboTerm="SBO:0000185" id="R_MAR11284" name="Intracellular Transport of 1-Vaccenoyl-Cholesterol, Cholesterol-Ester (18:1, Delta 11)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -453015,7 +452003,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11284">
+            <rdf:Description rdf:about="#R_MAR11284">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/XOLEST181tl"/>
@@ -453025,13 +452013,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM04075c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04075c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM04075l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04075l" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11285" sboTerm="SBO:0000185" id="MAR11285" name="Intracellular Transport of 1-Timnodnoyl-Cholesterol, Cholesterol-Ester (20:5, Delta 5, 8, 11, 14, 17)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11285" sboTerm="SBO:0000185" id="R_MAR11285" name="Intracellular Transport of 1-Timnodnoyl-Cholesterol, Cholesterol-Ester (20:5, Delta 5, 8, 11, 14, 17)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -453039,7 +452027,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11285">
+            <rdf:Description rdf:about="#R_MAR11285">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/XOLEST205tl"/>
@@ -453050,13 +452038,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM04079c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04079c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM04079l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04079l" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11286" sboTerm="SBO:0000185" id="MAR11286" name="Intracellular Transport of Cholesteryl Arachidonate, Cholesterol-Ester (20:4, Delta 5, 8, 11, 14)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11286" sboTerm="SBO:0000185" id="R_MAR11286" name="Intracellular Transport of Cholesteryl Arachidonate, Cholesterol-Ester (20:4, Delta 5, 8, 11, 14)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -453064,7 +452052,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11286">
+            <rdf:Description rdf:about="#R_MAR11286">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/XOLEST204tl"/>
@@ -453074,13 +452062,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM04078c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04078c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM04078l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04078l" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11287" sboTerm="SBO:0000185" id="MAR11287" name="Intracellular Transport of Cholesteryl Docosahexanoate, Cholesterol-Ester (22:6, Delta 4, 7, 10, 13, 16, 19)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11287" sboTerm="SBO:0000185" id="R_MAR11287" name="Intracellular Transport of Cholesteryl Docosahexanoate, Cholesterol-Ester (22:6, Delta 4, 7, 10, 13, 16, 19)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -453088,7 +452076,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11287">
+            <rdf:Description rdf:about="#R_MAR11287">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/XOLEST226tl"/>
@@ -453099,13 +452087,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM04080c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04080c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM04080l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04080l" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11288" sboTerm="SBO:0000185" id="MAR11288" name="Intracellular Transport for Benzoyl-Glycine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11288" sboTerm="SBO:0000185" id="R_MAR11288" name="Intracellular Transport for Benzoyl-Glycine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -453113,7 +452101,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11288">
+            <rdf:Description rdf:about="#R_MAR11288">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/BGLYtm"/>
@@ -453124,13 +452112,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02123m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02123m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02123c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02123c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11289" sboTerm="SBO:0000185" id="MAR11289" name="Transport of Phenylacetylglycine, Mitochondrial" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11289" sboTerm="SBO:0000185" id="R_MAR11289" name="Transport of Phenylacetylglycine, Mitochondrial" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -453138,7 +452126,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11289">
+            <rdf:Description rdf:about="#R_MAR11289">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PHEACGLYtm"/>
@@ -453150,13 +452138,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02723m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02723m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02723c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02723c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11290" sboTerm="SBO:0000185" id="MAR11290" name="Transport of Hexanoate (N-C6:0), Mitochondrial" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11290" sboTerm="SBO:0000185" id="R_MAR11290" name="Transport of Hexanoate (N-C6:0), Mitochondrial" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -453164,7 +452152,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11290">
+            <rdf:Description rdf:about="#R_MAR11290">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/HXAt1"/>
@@ -453175,13 +452163,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03684m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03684m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03684c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03684c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11291" sboTerm="SBO:0000185" id="MAR11291" name="Transport of Hexanoate (N-C6:0), Peroxisome" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11291" sboTerm="SBO:0000185" id="R_MAR11291" name="Transport of Hexanoate (N-C6:0), Peroxisome" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -453189,7 +452177,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11291">
+            <rdf:Description rdf:about="#R_MAR11291">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/HXAt2"/>
@@ -453200,13 +452188,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03684x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03684x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03684c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03684c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11292" sboTerm="SBO:0000185" id="MAR11292" name="Transport of Hexanoate (N-C6:0), Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11292" sboTerm="SBO:0000185" id="R_MAR11292" name="Transport of Hexanoate (N-C6:0), Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -453214,7 +452202,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11292">
+            <rdf:Description rdf:about="#R_MAR11292">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/HXAt3"/>
@@ -453225,13 +452213,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03684c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03684c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03684e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03684e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11293" sboTerm="SBO:0000627" id="MAR11293" name="Exchange of Hexanoate (N-C6:0)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11293" sboTerm="SBO:0000627" id="R_MAR11293" name="Exchange of Hexanoate (N-C6:0)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -453239,7 +452227,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11293">
+            <rdf:Description rdf:about="#R_MAR11293">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_hxa_e"/>
@@ -453251,10 +452239,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03684e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03684e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR11295" sboTerm="SBO:0000176" id="MAR11295" name="Phenylacetate Coenzyme A Ligase, Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11295" sboTerm="SBO:0000176" id="R_MAR11295" name="Phenylacetate Coenzyme A Ligase, Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -453262,7 +452250,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11295">
+            <rdf:Description rdf:about="#R_MAR11295">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PACCOALm"/>
@@ -453273,17 +452261,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02720m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02720m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01334m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02721m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02721m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11296" sboTerm="SBO:0000185" id="MAR11296" name="Intracellular Transport of Pacald" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11296" sboTerm="SBO:0000185" id="R_MAR11296" name="Intracellular Transport of Pacald" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -453291,7 +452279,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11296">
+            <rdf:Description rdf:about="#R_MAR11296">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PACALDtm"/>
@@ -453303,13 +452291,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02719c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02719c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02719m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02719m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11297" sboTerm="SBO:0000185" id="MAR11297" name="Intracellular Transport of Benzoate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11297" sboTerm="SBO:0000185" id="R_MAR11297" name="Intracellular Transport of Benzoate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -453317,7 +452305,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11297">
+            <rdf:Description rdf:about="#R_MAR11297">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/BZtm"/>
@@ -453330,13 +452318,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01380c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01380c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01380m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01380m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11298" sboTerm="SBO:0000185" id="MAR11298" name="Extracellular Transport of gncore  1" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11298" sboTerm="SBO:0000185" id="R_MAR11298" name="Extracellular Transport of gncore  1" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -453344,7 +452332,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11298">
+            <rdf:Description rdf:about="#R_MAR11298">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GNCORE1te"/>
@@ -453355,13 +452343,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01954c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01954c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01954e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01954e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11299" sboTerm="SBO:0000176" id="MAR11299" name="Formation of Homocystine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11299" sboTerm="SBO:0000176" id="R_MAR11299" name="Formation of Homocystine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -453370,7 +452358,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11299">
+            <rdf:Description rdf:about="#R_MAR11299">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/LHCYSTIN"/>
@@ -453381,15 +452369,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02026c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03394c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03394c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02027c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02133c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02027c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02133c" stoichiometry="2" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11300" sboTerm="SBO:0000185" id="MAR11300" name="Transport of Homocystine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11300" sboTerm="SBO:0000185" id="R_MAR11300" name="Transport of Homocystine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -453397,7 +452385,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11300">
+            <rdf:Description rdf:about="#R_MAR11300">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/LHCYSTINt"/>
@@ -453408,13 +452396,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03394c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03394c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03394e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03394e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11301" sboTerm="SBO:0000627" id="MAR11301" name="Exchange of Homocystine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11301" sboTerm="SBO:0000627" id="R_MAR11301" name="Exchange of Homocystine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -453422,7 +452410,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11301">
+            <rdf:Description rdf:about="#R_MAR11301">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_Lhcystin_e"/>
@@ -453433,10 +452421,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03394e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03394e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR11302" sboTerm="SBO:0000185" id="MAR11302" name="Transport of Phosphatidate, Mitochondrial" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11302" sboTerm="SBO:0000185" id="R_MAR11302" name="Transport of Phosphatidate, Mitochondrial" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -453445,7 +452433,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11302">
+            <rdf:Description rdf:about="#R_MAR11302">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.2.1.18"/>
@@ -453457,13 +452445,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02733c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02733c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02733m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02733m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11303" sboTerm="SBO:0000185" id="MAR11303" name="Transport of Hexadecenoate (N-C16:1) via Carnitine Antiport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11303" sboTerm="SBO:0000185" id="R_MAR11303" name="Transport of Hexadecenoate (N-C16:1) via Carnitine Antiport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -453472,7 +452460,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11303">
+            <rdf:Description rdf:about="#R_MAR11303">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.8.27"/>
@@ -453484,15 +452472,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02348e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02675c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02675c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02675e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02675e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11304" sboTerm="SBO:0000185" id="MAR11304" name="Transport of Hexadecenoate (N-C16:1) via Carnitine Antiport, Mitochondrial" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11304" sboTerm="SBO:0000185" id="R_MAR11304" name="Transport of Hexadecenoate (N-C16:1) via Carnitine Antiport, Mitochondrial" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -453501,7 +452489,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11304">
+            <rdf:Description rdf:about="#R_MAR11304">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.1.91"/>
@@ -453513,15 +452501,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02348m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02675c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02675c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02675m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02675m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11305" sboTerm="SBO:0000176" id="MAR11305" name="Fas180" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11305" sboTerm="SBO:0000176" id="R_MAR11305" name="Fas180" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -453530,7 +452518,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11305">
+            <rdf:Description rdf:about="#R_MAR11305">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.1.91"/>
@@ -453543,20 +452531,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM02444c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02674c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM02444c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02674c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01596c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02938c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01596c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02938c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11306" sboTerm="SBO:0000185" id="MAR11306" name="3-Methoxytyramine Secretion via Secretory Vesicle (ATP Driven)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11306" sboTerm="SBO:0000185" id="R_MAR11306" name="3-Methoxytyramine Secretion via Secretory Vesicle (ATP Driven)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -453565,7 +452553,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11306">
+            <rdf:Description rdf:about="#R_MAR11306">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/3MOXTYRESSte"/>
@@ -453577,18 +452565,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00821c" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM01371c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM00821c" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM00821e" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM00821e" stoichiometry="3" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11307" sboTerm="SBO:0000185" id="MAR11307" name="5-Aminolevulinate Transport in via Proton Symport" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11307" sboTerm="SBO:0000185" id="R_MAR11307" name="5-Aminolevulinate Transport in via Proton Symport" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -453597,7 +452585,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11307">
+            <rdf:Description rdf:about="#R_MAR11307">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/5AOPt2"/>
@@ -453609,15 +452597,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01074e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01074e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01074c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01074c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11308" sboTerm="SBO:0000185" id="MAR11308" name="N-Acetylneuraminate Proton Symport" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11308" sboTerm="SBO:0000185" id="R_MAR11308" name="N-Acetylneuraminate Proton Symport" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -453626,7 +452614,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11308">
+            <rdf:Description rdf:about="#R_MAR11308">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.4.12"/>
@@ -453641,15 +452629,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02543e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02543e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02543c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02543c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11309" sboTerm="SBO:0000176" id="MAR11309" name="Band Membrane Protein-Methyltransferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11309" sboTerm="SBO:0000176" id="R_MAR11309" name="Band Membrane Protein-Methyltransferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -453658,7 +452646,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11309">
+            <rdf:Description rdf:about="#R_MAR11309">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/BANDMT"/>
@@ -453670,16 +452658,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02877c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03481c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02877c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03481c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02871c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03482c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02871c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03482c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11310" sboTerm="SBO:0000176" id="MAR11310" name="Carnitine Octadecenoyl Transferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11310" sboTerm="SBO:0000176" id="R_MAR11310" name="Carnitine Octadecenoyl Transferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -453688,7 +452676,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11310">
+            <rdf:Description rdf:about="#R_MAR11310">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/C181CPT2rbc"/>
@@ -453700,15 +452688,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02639c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02639c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02348c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02647c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02647c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11311" sboTerm="SBO:0000185" id="MAR11311" name="Calcium (Ca+2) Transport via Diffusion (Extracellular to Cytosol)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11311" sboTerm="SBO:0000185" id="R_MAR11311" name="Calcium (Ca+2) Transport via Diffusion (Extracellular to Cytosol)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -453717,7 +452705,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11311">
+            <rdf:Description rdf:about="#R_MAR11311">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CA2t"/>
@@ -453729,13 +452717,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01413e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01413e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01413c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01413c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11312" sboTerm="SBO:0000185" id="MAR11312" name="Oxidized Glutathione Irreversible Active Transport (Rbc)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11312" sboTerm="SBO:0000185" id="R_MAR11312" name="Oxidized Glutathione Irreversible Active Transport (Rbc)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -453744,7 +452732,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11312">
+            <rdf:Description rdf:about="#R_MAR11312">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GTHOXti2"/>
@@ -453756,18 +452744,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02027c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02027c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02027e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02027e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11313" sboTerm="SBO:0000185" id="MAR11313" name="Homocysteine Transport, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11313" sboTerm="SBO:0000185" id="R_MAR11313" name="Homocysteine Transport, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -453776,7 +452764,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11313">
+            <rdf:Description rdf:about="#R_MAR11313">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/HCYSte"/>
@@ -453788,13 +452776,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02133e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02133e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02133c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02133c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11314" sboTerm="SBO:0000185" id="MAR11314" name="L-Normetanephrine Seceretion via Secretory Vesicle (ATP Driven)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11314" sboTerm="SBO:0000185" id="R_MAR11314" name="L-Normetanephrine Seceretion via Secretory Vesicle (ATP Driven)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -453803,7 +452791,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11314">
+            <rdf:Description rdf:about="#R_MAR11314">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/NORMETEVESSte"/>
@@ -453815,18 +452803,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02622c" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02622c" stoichiometry="3" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02622e" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02622e" stoichiometry="3" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11315" sboTerm="SBO:0000185" id="MAR11315" name="Orotate Transporter" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11315" sboTerm="SBO:0000185" id="R_MAR11315" name="Orotate Transporter" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -453835,7 +452823,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11315">
+            <rdf:Description rdf:about="#R_MAR11315">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/OROATP"/>
@@ -453847,15 +452835,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02659e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02659e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02659c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02659c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11316" sboTerm="SBO:0000176" id="MAR11316" name="Protoporphyrinogen Oxidase (Aerobic)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11316" sboTerm="SBO:0000176" id="R_MAR11316" name="Protoporphyrinogen Oxidase (Aerobic)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -453864,7 +452852,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11316">
+            <rdf:Description rdf:about="#R_MAR11316">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PPPGO"/>
@@ -453876,15 +452864,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02630c" stoichiometry="1.5" constant="true"/>
-          <speciesReference species="MAM02804c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1.5" constant="true"/>
+          <speciesReference species="M_MAM02804c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040c" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM02803c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM02803c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11317" sboTerm="SBO:0000185" id="MAR11317" name="Spermine Transport via Proton Antiport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11317" sboTerm="SBO:0000185" id="R_MAR11317" name="Spermine Transport via Proton Antiport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -453893,7 +452881,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11317">
+            <rdf:Description rdf:about="#R_MAR11317">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/SPRMt2i"/>
@@ -453905,15 +452893,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02926e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02926e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02926c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02926c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11318" sboTerm="SBO:0000185" id="MAR11318" name="Proton Diffusion" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11318" sboTerm="SBO:0000185" id="R_MAR11318" name="Proton Diffusion" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -453922,7 +452910,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11318">
+            <rdf:Description rdf:about="#R_MAR11318">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/Ht"/>
@@ -453936,13 +452924,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11319" sboTerm="SBO:0000185" id="MAR11319" name="Thiamine Monophosphate Transport (Passive - Red Blood Cell)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11319" sboTerm="SBO:0000185" id="R_MAR11319" name="Thiamine Monophosphate Transport (Passive - Red Blood Cell)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -453951,7 +452939,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11319">
+            <rdf:Description rdf:about="#R_MAR11319">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/THMMPtrbc"/>
@@ -453963,13 +452951,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02983e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02983e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02983c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02983c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11320" sboTerm="SBO:0000185" id="MAR11320" name="Thiamine Transprot (Passive - Red Blood Cell)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11320" sboTerm="SBO:0000185" id="R_MAR11320" name="Thiamine Transprot (Passive - Red Blood Cell)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -453978,7 +452966,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11320">
+            <rdf:Description rdf:about="#R_MAR11320">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/THMtrbc"/>
@@ -453990,13 +452978,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02982e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02982e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02982c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02982c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11321" sboTerm="SBO:0000176" id="MAR11321" name="UDP-Glucuronosyltransferase 1-10 Precursor, Cytosol" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11321" sboTerm="SBO:0000176" id="R_MAR11321" name="UDP-Glucuronosyltransferase 1-10 Precursor, Cytosol" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -454005,7 +452993,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11321">
+            <rdf:Description rdf:about="#R_MAR11321">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/UGT1A10c"/>
@@ -454016,15 +453004,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01396c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03109c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01396c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03109c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01398c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01398c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11322" sboTerm="SBO:0000185" id="MAR11322" name="N-Acetylgalactosamine Export" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11322" sboTerm="SBO:0000185" id="R_MAR11322" name="N-Acetylgalactosamine Export" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -454033,7 +453021,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11322">
+            <rdf:Description rdf:about="#R_MAR11322">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ACGALtr"/>
@@ -454044,13 +453032,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02525c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02525c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02525e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02525e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11323" sboTerm="SBO:0000185" id="MAR11323" name="N-Acetylneuraminate Export" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11323" sboTerm="SBO:0000185" id="R_MAR11323" name="N-Acetylneuraminate Export" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -454059,7 +453047,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11323">
+            <rdf:Description rdf:about="#R_MAR11323">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ACNAMtr"/>
@@ -454072,13 +453060,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02543c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02543c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02543e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02543e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11324" sboTerm="SBO:0000185" id="MAR11324" name="Core4 (Mucin O-Glycan) Export" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11324" sboTerm="SBO:0000185" id="R_MAR11324" name="Core4 (Mucin O-Glycan) Export" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -454087,7 +453075,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11324">
+            <rdf:Description rdf:about="#R_MAR11324">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CORE4t"/>
@@ -454098,13 +453086,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01609g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01609g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01609e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01609e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11325" sboTerm="SBO:0000185" id="MAR11325" name="Core5 (Mucin O-Glycan) Export" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11325" sboTerm="SBO:0000185" id="R_MAR11325" name="Core5 (Mucin O-Glycan) Export" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -454113,7 +453101,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11325">
+            <rdf:Description rdf:about="#R_MAR11325">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CORE5t"/>
@@ -454124,13 +453112,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01610g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01610g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01610e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01610e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11326" sboTerm="SBO:0000185" id="MAR11326" name="Core7 (Mucin O-Glycan) Export" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11326" sboTerm="SBO:0000185" id="R_MAR11326" name="Core7 (Mucin O-Glycan) Export" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -454139,7 +453127,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11326">
+            <rdf:Description rdf:about="#R_MAR11326">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CORE7t"/>
@@ -454150,13 +453138,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01612g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01612g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01612e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01612e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11327" sboTerm="SBO:0000185" id="MAR11327" name="Core8 (Mucin O-Glycan) Export" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11327" sboTerm="SBO:0000185" id="R_MAR11327" name="Core8 (Mucin O-Glycan) Export" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -454165,7 +453153,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11327">
+            <rdf:Description rdf:about="#R_MAR11327">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CORE8t"/>
@@ -454176,13 +453164,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01613g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01613g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01613e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01613e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11328" sboTerm="SBO:0000185" id="MAR11328" name="Dst_Antigen (Mucin O-Glycan) Export" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11328" sboTerm="SBO:0000185" id="R_MAR11328" name="Dst_Antigen (Mucin O-Glycan) Export" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -454191,7 +453179,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11328">
+            <rdf:Description rdf:about="#R_MAR11328">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/DST_ANTIGENt"/>
@@ -454202,13 +453190,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01712g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01712g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01712e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01712e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11329" sboTerm="SBO:0000185" id="MAR11329" name="Galactosamine Import" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11329" sboTerm="SBO:0000185" id="R_MAR11329" name="Galactosamine Import" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -454217,7 +453205,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11329">
+            <rdf:Description rdf:about="#R_MAR11329">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GALAMtr"/>
@@ -454228,13 +453216,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03585e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03585e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03585c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03585c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11330" sboTerm="SBO:0000185" id="MAR11330" name="Menaquinone Secretion/ Uptake (Menaquinone 10)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11330" sboTerm="SBO:0000185" id="R_MAR11330" name="Menaquinone Secretion/ Uptake (Menaquinone 10)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -454243,7 +453231,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11330">
+            <rdf:Description rdf:about="#R_MAR11330">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/MK10t"/>
@@ -454254,13 +453242,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03772c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03772c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03772e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03772e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11331" sboTerm="SBO:0000185" id="MAR11331" name="Menaquinone Secretion/ Uptake (Menaquinone 11)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11331" sboTerm="SBO:0000185" id="R_MAR11331" name="Menaquinone Secretion/ Uptake (Menaquinone 11)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -454269,7 +453257,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11331">
+            <rdf:Description rdf:about="#R_MAR11331">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/MK11t"/>
@@ -454280,13 +453268,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03773c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03773c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03773e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03773e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11332" sboTerm="SBO:0000185" id="MAR11332" name="Menaquinone Secretion/ Uptake (Menaquinone 7)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11332" sboTerm="SBO:0000185" id="R_MAR11332" name="Menaquinone Secretion/ Uptake (Menaquinone 7)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -454295,7 +453283,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11332">
+            <rdf:Description rdf:about="#R_MAR11332">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/MK7t"/>
@@ -454306,13 +453294,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03774c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03774c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03774e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03774e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11333" sboTerm="SBO:0000185" id="MAR11333" name="Menaquinone Secretion/ Uptake (Menaquinone 9)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11333" sboTerm="SBO:0000185" id="R_MAR11333" name="Menaquinone Secretion/ Uptake (Menaquinone 9)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -454321,7 +453309,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11333">
+            <rdf:Description rdf:about="#R_MAR11333">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/MK9t"/>
@@ -454332,13 +453320,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03776c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03776c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03776e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03776e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11334" sboTerm="SBO:0000185" id="MAR11334" name="De-Fuc Form of Pa6 (W/O Peptide Linkage) Transport, Lysosome to Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11334" sboTerm="SBO:0000185" id="R_MAR11334" name="De-Fuc Form of Pa6 (W/O Peptide Linkage) Transport, Lysosome to Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -454347,7 +453335,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11334">
+            <rdf:Description rdf:about="#R_MAR11334">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/S2L2N2M2Mt"/>
@@ -454358,13 +453346,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01651e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01651e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01651c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01651c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11335" sboTerm="SBO:0000185" id="MAR11335" name="Stn_Antigen (Mucin O-Glycan) Export" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11335" sboTerm="SBO:0000185" id="R_MAR11335" name="Stn_Antigen (Mucin O-Glycan) Export" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -454373,7 +453361,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11335">
+            <rdf:Description rdf:about="#R_MAR11335">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/STN_ANTIGENt"/>
@@ -454384,13 +453372,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02907g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02907g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02907e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02907e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11336" sboTerm="SBO:0000627" id="MAR11336" name="Exchange of Core 4 (Mucin O-Glycan)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11336" sboTerm="SBO:0000627" id="R_MAR11336" name="Exchange of Core 4 (Mucin O-Glycan)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -454398,7 +453386,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11336">
+            <rdf:Description rdf:about="#R_MAR11336">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_core4_e"/>
@@ -454409,10 +453397,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01609e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01609e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR11337" sboTerm="SBO:0000627" id="MAR11337" name="Exchange of F1Alpha (Mucin O-Glycan)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11337" sboTerm="SBO:0000627" id="R_MAR11337" name="Exchange of F1Alpha (Mucin O-Glycan)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -454420,7 +453408,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11337">
+            <rdf:Description rdf:about="#R_MAR11337">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_f1a_e"/>
@@ -454431,10 +453419,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01801e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01801e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR11338" sboTerm="SBO:0000627" id="MAR11338" name="Exchange of Galactosamine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11338" sboTerm="SBO:0000627" id="R_MAR11338" name="Exchange of Galactosamine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -454442,7 +453430,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11338">
+            <rdf:Description rdf:about="#R_MAR11338">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_galam_e"/>
@@ -454454,10 +453442,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03585e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03585e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR11339" sboTerm="SBO:0000627" id="MAR11339" name="Exchange of gncore 1 (Mucin O-Glycan)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11339" sboTerm="SBO:0000627" id="R_MAR11339" name="Exchange of gncore 1 (Mucin O-Glycan)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -454465,7 +453453,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11339">
+            <rdf:Description rdf:about="#R_MAR11339">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_gncore1_e"/>
@@ -454476,10 +453464,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01954e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01954e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR11340" sboTerm="SBO:0000627" id="MAR11340" name="Exchange of Menaquinone 10" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11340" sboTerm="SBO:0000627" id="R_MAR11340" name="Exchange of Menaquinone 10" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -454487,7 +453475,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11340">
+            <rdf:Description rdf:about="#R_MAR11340">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_mqn10_e"/>
@@ -454498,10 +453486,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03772e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03772e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR11341" sboTerm="SBO:0000627" id="MAR11341" name="Exchange of Menaquinone 11" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11341" sboTerm="SBO:0000627" id="R_MAR11341" name="Exchange of Menaquinone 11" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -454509,7 +453497,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11341">
+            <rdf:Description rdf:about="#R_MAR11341">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_mqn11_e"/>
@@ -454520,10 +453508,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03773e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03773e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR11342" sboTerm="SBO:0000627" id="MAR11342" name="Exchange of Menaquinone 7" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11342" sboTerm="SBO:0000627" id="R_MAR11342" name="Exchange of Menaquinone 7" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -454531,7 +453519,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11342">
+            <rdf:Description rdf:about="#R_MAR11342">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_mqn7_e"/>
@@ -454542,10 +453530,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03774e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03774e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR11343" sboTerm="SBO:0000627" id="MAR11343" name="Exchange of Menaquinone 9" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11343" sboTerm="SBO:0000627" id="R_MAR11343" name="Exchange of Menaquinone 9" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -454553,7 +453541,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11343">
+            <rdf:Description rdf:about="#R_MAR11343">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_mqn9_e"/>
@@ -454564,10 +453552,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03776e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03776e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR11344" sboTerm="SBO:0000627" id="MAR11344" name="Exchange of De-Fuc Form of Pa6 (W/O Peptide Linkage)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11344" sboTerm="SBO:0000627" id="R_MAR11344" name="Exchange of De-Fuc Form of Pa6 (W/O Peptide Linkage)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -454575,7 +453563,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11344">
+            <rdf:Description rdf:about="#R_MAR11344">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_s2l2n2m2m_e"/>
@@ -454586,10 +453574,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01651e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01651e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR11345" sboTerm="SBO:0000627" id="MAR11345" name="Exchange of Lipoamide" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11345" sboTerm="SBO:0000627" id="R_MAR11345" name="Exchange of Lipoamide" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -454597,7 +453585,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11345">
+            <rdf:Description rdf:about="#R_MAR11345">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_lpam_e"/>
@@ -454608,10 +453596,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02393e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02393e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR11346" sboTerm="SBO:0000185" id="MAR11346" name="Lipoamide Transport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11346" sboTerm="SBO:0000185" id="R_MAR11346" name="Lipoamide Transport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -454620,7 +453608,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11346">
+            <rdf:Description rdf:about="#R_MAR11346">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.23"/>
@@ -454632,15 +453620,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02393e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02393e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02393c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02393c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11347" sboTerm="SBO:0000627" id="MAR11347" name="Exchange of N-Acetylgalactosamine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11347" sboTerm="SBO:0000627" id="R_MAR11347" name="Exchange of N-Acetylgalactosamine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -454648,7 +453636,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11347">
+            <rdf:Description rdf:about="#R_MAR11347">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_acgal_e"/>
@@ -454660,10 +453648,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02525e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02525e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR11348" sboTerm="SBO:0000627" id="MAR11348" name="Exchange of N-Acetylneuraminate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11348" sboTerm="SBO:0000627" id="R_MAR11348" name="Exchange of N-Acetylneuraminate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -454671,7 +453659,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11348">
+            <rdf:Description rdf:about="#R_MAR11348">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_acnam_e"/>
@@ -454683,10 +453671,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02543e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02543e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR11349" sboTerm="SBO:0000627" id="MAR11349" name="Exchange of Phosphocreatine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11349" sboTerm="SBO:0000627" id="R_MAR11349" name="Exchange of Phosphocreatine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -454694,7 +453682,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11349">
+            <rdf:Description rdf:about="#R_MAR11349">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_pcreat_e"/>
@@ -454705,10 +453693,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01620e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01620e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR11350" sboTerm="SBO:0000627" id="MAR11350" name="Exchange of Cis-Aconitate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11350" sboTerm="SBO:0000627" id="R_MAR11350" name="Exchange of Cis-Aconitate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -454716,7 +453704,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11350">
+            <rdf:Description rdf:about="#R_MAR11350">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_HC00342_e"/>
@@ -454727,10 +453715,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01580e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01580e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR11351" sboTerm="SBO:0000627" id="MAR11351" name="Exchange of Azelaic Acid" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11351" sboTerm="SBO:0000627" id="R_MAR11351" name="Exchange of Azelaic Acid" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -454738,7 +453726,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11351">
+            <rdf:Description rdf:about="#R_MAR11351">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/EX_C08261[e]"/>
@@ -454748,10 +453736,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01372e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01372e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR11352" sboTerm="SBO:0000627" id="MAR11352" name="Exchange of Phosphatidate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11352" sboTerm="SBO:0000627" id="R_MAR11352" name="Exchange of Phosphatidate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -454759,7 +453747,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11352">
+            <rdf:Description rdf:about="#R_MAR11352">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_pa_hs_e"/>
@@ -454770,10 +453758,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02733e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02733e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR11353" sboTerm="SBO:0000627" id="MAR11353" name="Exchange of O-Methylhippurate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11353" sboTerm="SBO:0000627" id="R_MAR11353" name="Exchange of O-Methylhippurate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -454781,7 +453769,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11353">
+            <rdf:Description rdf:about="#R_MAR11353">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_CE2934_e"/>
@@ -454792,10 +453780,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02654e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02654e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR11354" sboTerm="SBO:0000185" id="MAR11354" name="Transport of F1Alpha, Lysosomal" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11354" sboTerm="SBO:0000185" id="R_MAR11354" name="Transport of F1Alpha, Lysosomal" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -454803,7 +453791,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11354">
+            <rdf:Description rdf:about="#R_MAR11354">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.2"/>
@@ -454815,13 +453803,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01801e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01801e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01801l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01801l" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11355" sboTerm="SBO:0000185" id="MAR11355" name="Transport of F1Alpha, Golgi Apparatus" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11355" sboTerm="SBO:0000185" id="R_MAR11355" name="Transport of F1Alpha, Golgi Apparatus" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -454829,7 +453817,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11355">
+            <rdf:Description rdf:about="#R_MAR11355">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/F1Ate2"/>
@@ -454840,13 +453828,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01801e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01801e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01801g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01801g" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11356" sboTerm="SBO:0000185" id="MAR11356" name="Transport of gncore  1, Golgi Apparatus" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11356" sboTerm="SBO:0000185" id="R_MAR11356" name="Transport of gncore  1, Golgi Apparatus" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -454854,7 +453842,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11356">
+            <rdf:Description rdf:about="#R_MAR11356">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GNCORE1t"/>
@@ -454867,13 +453855,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01954g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01954g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01954c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01954c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11357" sboTerm="SBO:0000185" id="MAR11357" name="Transport of 3-(4-Hydroxyphenyl)Lactate, Mitochondrial" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11357" sboTerm="SBO:0000185" id="R_MAR11357" name="Transport of 3-(4-Hydroxyphenyl)Lactate, Mitochondrial" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -454881,7 +453869,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11357">
+            <rdf:Description rdf:about="#R_MAR11357">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/34HPLtm"/>
@@ -454892,15 +453880,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01004c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01004c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01004m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01004m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11358" sboTerm="SBO:0000185" id="MAR11358" name="Transport of 3-Hydroxy-Isobutyrate, Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11358" sboTerm="SBO:0000185" id="R_MAR11358" name="Transport of 3-Hydroxy-Isobutyrate, Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -454908,7 +453896,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11358">
+            <rdf:Description rdf:about="#R_MAR11358">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/3HMPtm"/>
@@ -454919,13 +453907,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00784m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00784m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00784c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00784c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11359" sboTerm="SBO:0000185" id="MAR11359" name="Transport of 3-Hydroxypropionate, Mitochondrial" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11359" sboTerm="SBO:0000185" id="R_MAR11359" name="Transport of 3-Hydroxypropionate, Mitochondrial" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -454933,7 +453921,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11359">
+            <rdf:Description rdf:about="#R_MAR11359">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/3HPPtm"/>
@@ -454946,13 +453934,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02142c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02142c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02142m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02142m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11360" sboTerm="SBO:0000185" id="MAR11360" name="Transport of N-Acetyl-L-Glutamate, Mitochondrial" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11360" sboTerm="SBO:0000185" id="R_MAR11360" name="Transport of N-Acetyl-L-Glutamate, Mitochondrial" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -454960,7 +453948,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11360">
+            <rdf:Description rdf:about="#R_MAR11360">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.2"/>
@@ -454972,13 +453960,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02536c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02536c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02536m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02536m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11361" sboTerm="SBO:0000185" id="MAR11361" name="Transport of Lipoamide, Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11361" sboTerm="SBO:0000185" id="R_MAR11361" name="Transport of Lipoamide, Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -454986,7 +453974,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11361">
+            <rdf:Description rdf:about="#R_MAR11361">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/LPAMtm"/>
@@ -454997,15 +453985,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02393c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039i" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02393c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039i" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02393m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02393m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11362" sboTerm="SBO:0000185" id="MAR11362" name="Transport of L-Homoserine, Mitochondrial" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11362" sboTerm="SBO:0000185" id="R_MAR11362" name="Transport of L-Homoserine, Mitochondrial" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -455013,7 +454001,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11362">
+            <rdf:Description rdf:about="#R_MAR11362">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/r2535m"/>
@@ -455026,13 +454014,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02136m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02136m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02136c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02136c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11363" sboTerm="SBO:0000185" id="MAR11363" name="Transport of Phosphatidyl Glycerol Phosphate, Mitochondrial" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11363" sboTerm="SBO:0000185" id="R_MAR11363" name="Transport of Phosphatidyl Glycerol Phosphate, Mitochondrial" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -455040,7 +454028,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11363">
+            <rdf:Description rdf:about="#R_MAR11363">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.2"/>
@@ -455052,13 +454040,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02717m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02717m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02717c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02717c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11364" sboTerm="SBO:0000185" id="MAR11364" name="Transport of O-Methylhippurate, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11364" sboTerm="SBO:0000185" id="R_MAR11364" name="Transport of O-Methylhippurate, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -455067,7 +454055,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11364">
+            <rdf:Description rdf:about="#R_MAR11364">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CE2934t"/>
@@ -455078,13 +454066,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02654c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02654c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02654e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02654e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11365" sboTerm="SBO:0000185" id="MAR11365" name="Transprot of Taurolithocholate, Peroxisomal" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11365" sboTerm="SBO:0000185" id="R_MAR11365" name="Transprot of Taurolithocholate, Peroxisomal" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -455092,7 +454080,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11365">
+            <rdf:Description rdf:about="#R_MAR11365">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/C02592tx"/>
@@ -455105,13 +454093,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02965c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02965c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02965x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02965x" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11366" sboTerm="SBO:0000185" id="MAR11366" name="Transport of Prostaglandin E2, Endoplasmatic Reticulum" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11366" sboTerm="SBO:0000185" id="R_MAR11366" name="Transport of Prostaglandin E2, Endoplasmatic Reticulum" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -455119,7 +454107,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11366">
+            <rdf:Description rdf:about="#R_MAR11366">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.2"/>
@@ -455133,13 +454121,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02786r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02786r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02786c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02786c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11367" sboTerm="SBO:0000185" id="MAR11367" name="Transport of Prostaglandin E2, Mitochondrial" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11367" sboTerm="SBO:0000185" id="R_MAR11367" name="Transport of Prostaglandin E2, Mitochondrial" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -455147,7 +454135,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11367">
+            <rdf:Description rdf:about="#R_MAR11367">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PROSTGE2t2m"/>
@@ -455160,13 +454148,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02786m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02786m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02786c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02786c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11368" sboTerm="SBO:0000176" id="MAR11368" name="ESTRr" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11368" sboTerm="SBO:0000176" id="R_MAR11368" name="ESTRr" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -455174,7 +454162,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11368">
+            <rdf:Description rdf:about="#R_MAR11368">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ESTRr"/>
@@ -455187,18 +454175,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01787r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01787r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01788r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01788r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11369" sboTerm="SBO:0000176" id="MAR11369" name="ESTR2r" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11369" sboTerm="SBO:0000176" id="R_MAR11369" name="ESTR2r" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -455206,7 +454194,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11369">
+            <rdf:Description rdf:about="#R_MAR11369">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.2"/>
@@ -455218,16 +454206,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00400r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00400r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01788r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01788r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11370" sboTerm="SBO:0000185" id="MAR11370" name="Transport of 5Alpha-Cholest-7-En-3Beta-Ol, Endoplasmatic Reticulum" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11370" sboTerm="SBO:0000185" id="R_MAR11370" name="Transport of 5Alpha-Cholest-7-En-3Beta-Ol, Endoplasmatic Reticulum" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -455235,7 +454223,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11370">
+            <rdf:Description rdf:about="#R_MAR11370">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/LTHSTRLtr"/>
@@ -455246,13 +454234,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02343c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02343c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02343r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02343r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11371" sboTerm="SBO:0000185" id="MAR11371" name="Transport of Phosphatidylglycerol, Endoplasmatic Reticulum" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11371" sboTerm="SBO:0000185" id="R_MAR11371" name="Transport of Phosphatidylglycerol, Endoplasmatic Reticulum" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -455260,7 +454248,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11371">
+            <rdf:Description rdf:about="#R_MAR11371">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PGLYCtm"/>
@@ -455273,13 +454261,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02715m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02715m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02715c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02715c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11372" sboTerm="SBO:0000185" id="MAR11372" name="Transport of Phosphorylase-Limit Dextrin" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11372" sboTerm="SBO:0000185" id="R_MAR11372" name="Transport of Phosphorylase-Limit Dextrin" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -455287,7 +454275,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11372">
+            <rdf:Description rdf:about="#R_MAR11372">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/DXTRNt"/>
@@ -455298,13 +454286,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01991c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01991c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01991e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01991e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11373" sboTerm="SBO:0000627" id="MAR11373" name="Exchange of Phosphorylase-Limit Dextrin" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11373" sboTerm="SBO:0000627" id="R_MAR11373" name="Exchange of Phosphorylase-Limit Dextrin" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -455312,7 +454300,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11373">
+            <rdf:Description rdf:about="#R_MAR11373">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_dxtrn_e"/>
@@ -455323,10 +454311,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01991e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01991e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR11374" sboTerm="SBO:0000185" id="MAR11374" name="Transport of 3Alpha, 7Alpha-Dihydroxy-5Beta-Cholestanate, Active Transport" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11374" sboTerm="SBO:0000185" id="R_MAR11374" name="Transport of 3Alpha, 7Alpha-Dihydroxy-5Beta-Cholestanate, Active Transport" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -455335,7 +454323,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11374">
+            <rdf:Description rdf:about="#R_MAR11374">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/DHCHOLESTANATEATP"/>
@@ -455346,15 +454334,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00758c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00758c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00758e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00758e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -455363,7 +454351,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR11375" sboTerm="SBO:0000185" id="MAR11375" name="Transport of 3Alpha, 7Alpha-Dihydroxy-5Beta-Cholestanate, Sodium Symport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11375" sboTerm="SBO:0000185" id="R_MAR11375" name="Transport of 3Alpha, 7Alpha-Dihydroxy-5Beta-Cholestanate, Sodium Symport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -455372,7 +454360,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11375">
+            <rdf:Description rdf:about="#R_MAR11375">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/DHCHOLESTANATEt"/>
@@ -455383,18 +454371,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00758c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00758c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00758e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00758e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG11655"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR11376" sboTerm="SBO:0000627" id="MAR11376" name="Exchange of 3Alpha, 7Alpha-Dihydroxy-5Beta-Cholestanate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11376" sboTerm="SBO:0000627" id="R_MAR11376" name="Exchange of 3Alpha, 7Alpha-Dihydroxy-5Beta-Cholestanate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -455402,7 +454390,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11376">
+            <rdf:Description rdf:about="#R_MAR11376">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_dhcholestanate_e"/>
@@ -455413,10 +454401,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00758e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00758e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR11377" sboTerm="SBO:0000185" id="MAR11377" name="Transport of 3Alpha, 7Alpha, 12Alpha-Trihydroxy-5Beta-Cholestanoate, Active Transport" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11377" sboTerm="SBO:0000185" id="R_MAR11377" name="Transport of 3Alpha, 7Alpha, 12Alpha-Trihydroxy-5Beta-Cholestanoate, Active Transport" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -455425,7 +454413,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11377">
+            <rdf:Description rdf:about="#R_MAR11377">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/THCHOLSTOICATP"/>
@@ -455436,15 +454424,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00752c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00752c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00752e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00752e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -455453,7 +454441,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR11378" sboTerm="SBO:0000185" id="MAR11378" name="Transport of 3Alpha, 7Alpha, 12Alpha-Trihydroxy-5Beta-Cholestanoate, Sodium Symport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11378" sboTerm="SBO:0000185" id="R_MAR11378" name="Transport of 3Alpha, 7Alpha, 12Alpha-Trihydroxy-5Beta-Cholestanoate, Sodium Symport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -455462,7 +454450,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11378">
+            <rdf:Description rdf:about="#R_MAR11378">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/THCHOLSTOICt"/>
@@ -455473,18 +454461,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00752c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00752c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00752e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00752e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG11655"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR11379" sboTerm="SBO:0000627" id="MAR11379" name="Exchange of 3Alpha, 7Alpha, 12Alpha-Trihydroxy-5Beta-Cholestanoate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11379" sboTerm="SBO:0000627" id="R_MAR11379" name="Exchange of 3Alpha, 7Alpha, 12Alpha-Trihydroxy-5Beta-Cholestanoate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -455492,7 +454480,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11379">
+            <rdf:Description rdf:about="#R_MAR11379">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_thcholstoic_e"/>
@@ -455503,10 +454491,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00752e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00752e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR11380" sboTerm="SBO:0000185" id="MAR11380" name="Transport of 5Beta-Cholestane-3Alpha, 7Alpha, 26-Triol, Active Transport" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11380" sboTerm="SBO:0000185" id="R_MAR11380" name="Transport of 5Beta-Cholestane-3Alpha, 7Alpha, 26-Triol, Active Transport" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -455515,7 +454503,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11380">
+            <rdf:Description rdf:about="#R_MAR11380">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/XOL7AH3ATP"/>
@@ -455526,15 +454514,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01093c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01093c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01093e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01093e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -455543,7 +454531,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR11381" sboTerm="SBO:0000185" id="MAR11381" name="Transport of 5Beta-Cholestane-3Alpha, 7Alpha, 26-Triol, Sodium Symport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11381" sboTerm="SBO:0000185" id="R_MAR11381" name="Transport of 5Beta-Cholestane-3Alpha, 7Alpha, 26-Triol, Sodium Symport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -455552,7 +454540,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11381">
+            <rdf:Description rdf:about="#R_MAR11381">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/XOL7AH3t"/>
@@ -455563,18 +454551,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01093c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01093c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01093e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01093e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG11655"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR11382" sboTerm="SBO:0000627" id="MAR11382" name="Exchange of 5Beta-Cholestane-3Alpha, 7Alpha, 26-Triol" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11382" sboTerm="SBO:0000627" id="R_MAR11382" name="Exchange of 5Beta-Cholestane-3Alpha, 7Alpha, 26-Triol" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -455582,7 +454570,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11382">
+            <rdf:Description rdf:about="#R_MAR11382">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_xol7ah3_e"/>
@@ -455593,10 +454581,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01093e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01093e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR11383" sboTerm="SBO:0000185" id="MAR11383" name="Transport of 7Alpha-Hydroxycholest-4-En-3-One, Active Transport" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11383" sboTerm="SBO:0000185" id="R_MAR11383" name="Transport of 7Alpha-Hydroxycholest-4-En-3-One, Active Transport" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -455605,7 +454593,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11383">
+            <rdf:Description rdf:about="#R_MAR11383">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/XOL7AONEATP"/>
@@ -455616,15 +454604,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01182c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01182c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01182e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01182e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -455633,7 +454621,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR11384" sboTerm="SBO:0000185" id="MAR11384" name="Transport of 7Alpha-Hydroxycholest-4-En-3-One, Sodium Symport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11384" sboTerm="SBO:0000185" id="R_MAR11384" name="Transport of 7Alpha-Hydroxycholest-4-En-3-One, Sodium Symport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -455642,7 +454630,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11384">
+            <rdf:Description rdf:about="#R_MAR11384">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/XOL7AONEt"/>
@@ -455653,18 +454641,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01182c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01182c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01182e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01182e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG11655"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR11385" sboTerm="SBO:0000627" id="MAR11385" name="Exchange of 7Alpha-Hydroxycholest-4-En-3-One" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11385" sboTerm="SBO:0000627" id="R_MAR11385" name="Exchange of 7Alpha-Hydroxycholest-4-En-3-One" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -455672,7 +454660,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11385">
+            <rdf:Description rdf:about="#R_MAR11385">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_xol7aone_e"/>
@@ -455683,10 +454671,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01182e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01182e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR11386" sboTerm="SBO:0000185" id="MAR11386" name="Transport of 7Alpha, 12Alpha-Dihydroxycholest-4-En-3-One, Active Transport" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11386" sboTerm="SBO:0000185" id="R_MAR11386" name="Transport of 7Alpha, 12Alpha-Dihydroxycholest-4-En-3-One, Active Transport" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -455695,7 +454683,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11386">
+            <rdf:Description rdf:about="#R_MAR11386">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/XOLDIOLONEATP"/>
@@ -455706,15 +454694,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01178c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01178c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01178e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01178e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -455723,7 +454711,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR11387" sboTerm="SBO:0000627" id="MAR11387" name="Exchange of 7Alpha, 12Alpha-Dihydroxycholest-4-En-3-One" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11387" sboTerm="SBO:0000627" id="R_MAR11387" name="Exchange of 7Alpha, 12Alpha-Dihydroxycholest-4-En-3-One" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -455731,7 +454719,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11387">
+            <rdf:Description rdf:about="#R_MAR11387">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_xoldiolone_e"/>
@@ -455742,10 +454730,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01178e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01178e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR11388" sboTerm="SBO:0000185" id="MAR11388" name="Transport of 7-Ketolithocholate, Active Transport" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11388" sboTerm="SBO:0000185" id="R_MAR11388" name="Transport of 7-Ketolithocholate, Active Transport" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -455754,7 +454742,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11388">
+            <rdf:Description rdf:about="#R_MAR11388">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/7KILTCHOLATP"/>
@@ -455765,15 +454753,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03313c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03313c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03313e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03313e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -455782,7 +454770,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR11389" sboTerm="SBO:0000185" id="MAR11389" name="Transport of 7-Ketolithocholate, Sodium Symport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11389" sboTerm="SBO:0000185" id="R_MAR11389" name="Transport of 7-Ketolithocholate, Sodium Symport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -455791,7 +454779,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11389">
+            <rdf:Description rdf:about="#R_MAR11389">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/7KILTCHOLt"/>
@@ -455802,18 +454790,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03313c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03313c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03313e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03313e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG11655"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR11390" sboTerm="SBO:0000627" id="MAR11390" name="Exchange of 7-Ketolithocholate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11390" sboTerm="SBO:0000627" id="R_MAR11390" name="Exchange of 7-Ketolithocholate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -455821,7 +454809,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11390">
+            <rdf:Description rdf:about="#R_MAR11390">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_7klitchol_e"/>
@@ -455832,10 +454820,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03313e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03313e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR11391" sboTerm="SBO:0000627" id="MAR11391" name="Exchange of 2-Oxobutanoate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11391" sboTerm="SBO:0000627" id="R_MAR11391" name="Exchange of 2-Oxobutanoate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -455843,7 +454831,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11391">
+            <rdf:Description rdf:about="#R_MAR11391">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_2obut_e"/>
@@ -455855,10 +454843,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00671e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00671e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR11392" sboTerm="SBO:0000627" id="MAR11392" name="Exchange of Glutarate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11392" sboTerm="SBO:0000627" id="R_MAR11392" name="Exchange of Glutarate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -455866,7 +454854,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11392">
+            <rdf:Description rdf:about="#R_MAR11392">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/EX_glutar[e]"/>
@@ -455876,10 +454864,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03614e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03614e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR11393" sboTerm="SBO:0000627" id="MAR11393" name="Exchange of D-Gluconate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11393" sboTerm="SBO:0000627" id="R_MAR11393" name="Exchange of D-Gluconate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -455887,7 +454875,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11393">
+            <rdf:Description rdf:about="#R_MAR11393">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_glcn_e"/>
@@ -455899,10 +454887,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01683e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01683e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR11394" sboTerm="SBO:0000176" id="MAR11394" name="Acetate Coenzyme A Ligase (ADP-Forming)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11394" sboTerm="SBO:0000176" id="R_MAR11394" name="Acetate Coenzyme A Ligase (ADP-Forming)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -455911,7 +454899,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11394">
+            <rdf:Description rdf:about="#R_MAR11394">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.13"/>
@@ -455926,20 +454914,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02772c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02772c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02774c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02774c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="AcCoAS"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR11395" sboTerm="SBO:0000185" id="MAR11395" name="Adenosine Transport Cnt3" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11395" sboTerm="SBO:0000185" id="R_MAR11395" name="Adenosine Transport Cnt3" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -455947,7 +454935,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11395">
+            <rdf:Description rdf:about="#R_MAR11395">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ADNt2"/>
@@ -455961,12 +454949,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01280e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01280e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01280c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01280c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -455975,7 +454963,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR11396" sboTerm="SBO:0000185" id="MAR11396" name="Butyrate Transport via Proton Symport, Reversible" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11396" sboTerm="SBO:0000185" id="R_MAR11396" name="Butyrate Transport via Proton Symport, Reversible" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -455984,7 +454972,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11396">
+            <rdf:Description rdf:about="#R_MAR11396">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/BUTt2r"/>
@@ -455996,18 +454984,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01410e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01410e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01410c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01410c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="hrm"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR11397" sboTerm="SBO:0000185" id="MAR11397" name="Cytidine Transport in via Proton Symport, Reversible" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11397" sboTerm="SBO:0000185" id="R_MAR11397" name="Cytidine Transport in via Proton Symport, Reversible" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -456015,7 +455003,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11397">
+            <rdf:Description rdf:about="#R_MAR11397">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CYTDt2"/>
@@ -456029,18 +455017,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01630e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01630e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01630c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CNT1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR11398" sboTerm="SBO:0000176" id="MAR11398" name="DUTP Diphosphatase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11398" sboTerm="SBO:0000176" id="R_MAR11398" name="DUTP Diphosphatase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -456048,7 +455036,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11398">
+            <rdf:Description rdf:about="#R_MAR11398">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/DUTPDP"/>
@@ -456062,16 +455050,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01756c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01756c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01755c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01755c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11399" sboTerm="SBO:0000176" id="MAR11399" name="L-Erythro-4-Hydroxyglutamate:2-Oxoglutarate Aminotransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11399" sboTerm="SBO:0000176" id="R_MAR11399" name="L-Erythro-4-Hydroxyglutamate:2-Oxoglutarate Aminotransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -456080,7 +455068,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11399">
+            <rdf:Description rdf:about="#R_MAR11399">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.6.1.1"/>
@@ -456093,18 +455081,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01306c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02358c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01306c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02358c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01974c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00989c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01974c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00989c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Got1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR11400" sboTerm="SBO:0000627" id="MAR11400" name="Exchange of Fumarate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11400" sboTerm="SBO:0000627" id="R_MAR11400" name="Exchange of Fumarate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -456112,7 +455100,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11400">
+            <rdf:Description rdf:about="#R_MAR11400">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_fum_e"/>
@@ -456124,10 +455112,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01862e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01862e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR11401" sboTerm="SBO:0000627" id="MAR11401" name="Exchange of Glycylleucine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11401" sboTerm="SBO:0000627" id="R_MAR11401" name="Exchange of Glycylleucine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -456135,7 +455123,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11401">
+            <rdf:Description rdf:about="#R_MAR11401">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_glyleu_e"/>
@@ -456147,10 +455135,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03626e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03626e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR11402" sboTerm="SBO:0000627" id="MAR11402" name="Exchange of Glycylphenylalaine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11402" sboTerm="SBO:0000627" id="R_MAR11402" name="Exchange of Glycylphenylalaine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -456158,7 +455146,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11402">
+            <rdf:Description rdf:about="#R_MAR11402">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_glyphe_e"/>
@@ -456170,10 +455158,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03629e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03629e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR11403" sboTerm="SBO:0000627" id="MAR11403" name="Exchange of Glypro" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11403" sboTerm="SBO:0000627" id="R_MAR11403" name="Exchange of Glypro" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -456181,7 +455169,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11403">
+            <rdf:Description rdf:about="#R_MAR11403">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_glypro_e"/>
@@ -456193,10 +455181,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03630e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03630e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR11404" sboTerm="SBO:0000627" id="MAR11404" name="Exchange of L-Malate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11404" sboTerm="SBO:0000627" id="R_MAR11404" name="Exchange of L-Malate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -456204,7 +455192,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11404">
+            <rdf:Description rdf:about="#R_MAR11404">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_mal__L_e"/>
@@ -456216,10 +455204,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02439e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02439e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR11405" sboTerm="SBO:0000627" id="MAR11405" name="Exchange of Ppi" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11405" sboTerm="SBO:0000627" id="R_MAR11405" name="Exchange of Ppi" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -456227,7 +455215,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11405">
+            <rdf:Description rdf:about="#R_MAR11405">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_ppi_e"/>
@@ -456239,10 +455227,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02759e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR11406" sboTerm="SBO:0000176" id="MAR11406" name="Ferrochelatase, Cytosol" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11406" sboTerm="SBO:0000176" id="R_MAR11406" name="Ferrochelatase, Cytosol" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -456251,7 +455239,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11406">
+            <rdf:Description rdf:about="#R_MAR11406">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FCLT"/>
@@ -456263,15 +455251,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01821c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02803c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01821c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02803c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02049c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02049c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11407" sboTerm="SBO:0000176" id="MAR11407" name="Ferroxidase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11407" sboTerm="SBO:0000176" id="R_MAR11407" name="Ferroxidase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -456280,7 +455268,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11407">
+            <rdf:Description rdf:about="#R_MAR11407">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FERO"/>
@@ -456292,13 +455280,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01821c" stoichiometry="4" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="4" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01821c" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01822c" stoichiometry="4" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01822c" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -456307,7 +455295,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR11408" sboTerm="SBO:0000176" id="MAR11408" name="Farnesyltranstransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11408" sboTerm="SBO:0000176" id="R_MAR11408" name="Farnesyltranstransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -456316,7 +455304,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11408">
+            <rdf:Description rdf:about="#R_MAR11408">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.5.1.29"/>
@@ -456329,18 +455317,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01806c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02187c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01806c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02187c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02759c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03590c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03590c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="qm"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR11409" sboTerm="SBO:0000176" id="MAR11409" name="Farnesyltranstransferase (Trans, Trans, Cis-Geranylgeranyl Diphosphate-Generating)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11409" sboTerm="SBO:0000176" id="R_MAR11409" name="Farnesyltranstransferase (Trans, Trans, Cis-Geranylgeranyl Diphosphate-Generating)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -456348,7 +455336,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11409">
+            <rdf:Description rdf:about="#R_MAR11409">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.3.2.17"/>
@@ -456361,15 +455349,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01806c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02187c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01806c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02187c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02759c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03026c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03026c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11411" sboTerm="SBO:0000176" id="MAR11411" name="Hydrolysis of Glycylleucine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11411" sboTerm="SBO:0000176" id="R_MAR11411" name="Hydrolysis of Glycylleucine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -456378,7 +455366,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11411">
+            <rdf:Description rdf:about="#R_MAR11411">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GLYLEUHYDROc"/>
@@ -456390,18 +455378,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03626c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03626c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01986c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02360c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02360c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG6154"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR11412" sboTerm="SBO:0000185" id="MAR11412" name="Transport of Glycylleucine by the Apical Pept1 Amino Acid Transporters" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11412" sboTerm="SBO:0000185" id="R_MAR11412" name="Transport of Glycylleucine by the Apical Pept1 Amino Acid Transporters" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -456410,7 +455398,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11412">
+            <rdf:Description rdf:about="#R_MAR11412">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GLYLEUPEPT1tc"/>
@@ -456422,18 +455410,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03626e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03626e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03626c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03626c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG2930"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR11413" sboTerm="SBO:0000176" id="MAR11413" name="Hydrolysis of Glycylphenylalanine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11413" sboTerm="SBO:0000176" id="R_MAR11413" name="Hydrolysis of Glycylphenylalanine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -456442,7 +455430,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11413">
+            <rdf:Description rdf:about="#R_MAR11413">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GLYPHEHYc"/>
@@ -456454,15 +455442,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03629c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03629c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01986c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02724c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02724c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11414" sboTerm="SBO:0000176" id="MAR11414" name="Hydrolysis of Prolylglycine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11414" sboTerm="SBO:0000176" id="R_MAR11414" name="Hydrolysis of Prolylglycine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -456471,7 +455459,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11414">
+            <rdf:Description rdf:about="#R_MAR11414">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GLYPROPRO1c"/>
@@ -456483,15 +455471,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01986c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02770c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02770c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11415" sboTerm="SBO:0000185" id="MAR11415" name="Inosine Transport in via Proton Symport, Reversible" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11415" sboTerm="SBO:0000185" id="R_MAR11415" name="Inosine Transport in via Proton Symport, Reversible" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -456499,7 +455487,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11415">
+            <rdf:Description rdf:about="#R_MAR11415">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/INSt2"/>
@@ -456513,18 +455501,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02170e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02170e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02170c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02170c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CNT1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR11416" sboTerm="SBO:0000176" id="MAR11416" name="Phosphopantothenate-Cysteine Ligase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11416" sboTerm="SBO:0000176" id="R_MAR11416" name="Phosphopantothenate-Cysteine Ligase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -456532,7 +455520,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11416">
+            <rdf:Description rdf:about="#R_MAR11416">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.3.4"/>
@@ -456545,21 +455533,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01628c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01636c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01628c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01636c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00163c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01334c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00163c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Ppcs"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR11417" sboTerm="SBO:0000185" id="MAR11417" name="Thymidine Transport in via Proton Symport Reversible" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11417" sboTerm="SBO:0000185" id="R_MAR11417" name="Thymidine Transport in via Proton Symport Reversible" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -456567,7 +455555,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11417">
+            <rdf:Description rdf:about="#R_MAR11417">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/THMDt2"/>
@@ -456581,18 +455569,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02996e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02996e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02996c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02996c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CNT1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR11418" sboTerm="SBO:0000185" id="MAR11418" name="Uridine Transport in via Proton Symport Reversible" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11418" sboTerm="SBO:0000185" id="R_MAR11418" name="Uridine Transport in via Proton Symport Reversible" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -456600,7 +455588,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11418">
+            <rdf:Description rdf:about="#R_MAR11418">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/URIt2"/>
@@ -456614,18 +455602,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03123e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03123e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03123c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03123c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CNT1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR11419" sboTerm="SBO:0000627" id="MAR11419" name="Exchange of Indole-3-Acetate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11419" sboTerm="SBO:0000627" id="R_MAR11419" name="Exchange of Indole-3-Acetate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -456633,7 +455621,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11419">
+            <rdf:Description rdf:about="#R_MAR11419">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_ind3ac_e"/>
@@ -456645,10 +455633,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02169e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02169e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR11420" sboTerm="SBO:0000627" id="MAR11420" name="Exchange of Ammonia" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11420" sboTerm="SBO:0000627" id="R_MAR11420" name="Exchange of Ammonia" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -456656,7 +455644,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11420">
+            <rdf:Description rdf:about="#R_MAR11420">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_nh4_e"/>
@@ -456668,10 +455656,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02579e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02579e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR11422" sboTerm="SBO:0000627" id="MAR11422" name="Exchange of Galactitol" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11422" sboTerm="SBO:0000627" id="R_MAR11422" name="Exchange of Galactitol" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -456679,7 +455667,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11422">
+            <rdf:Description rdf:about="#R_MAR11422">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_galt_e"/>
@@ -456691,10 +455679,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01909e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01909e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR11423" sboTerm="SBO:0000627" id="MAR11423" name="Exchange of Glcr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11423" sboTerm="SBO:0000627" id="R_MAR11423" name="Exchange of Glcr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -456702,7 +455690,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11423">
+            <rdf:Description rdf:about="#R_MAR11423">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_glcr_e"/>
@@ -456714,10 +455702,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01681e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01681e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR11424" sboTerm="SBO:0000627" id="MAR11424" name="Exchange of D-Glucuronate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11424" sboTerm="SBO:0000627" id="R_MAR11424" name="Exchange of D-Glucuronate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -456725,7 +455713,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11424">
+            <rdf:Description rdf:about="#R_MAR11424">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_glcur_e"/>
@@ -456737,10 +455725,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01973e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01973e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR11425" sboTerm="SBO:0000627" id="MAR11425" name="Exchange of Maltohexaose" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11425" sboTerm="SBO:0000627" id="R_MAR11425" name="Exchange of Maltohexaose" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -456748,7 +455736,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11425">
+            <rdf:Description rdf:about="#R_MAR11425">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_malthx_e"/>
@@ -456762,10 +455750,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02447e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02447e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR11426" sboTerm="SBO:0000627" id="MAR11426" name="Exchange of 1, 4-Butanediammonium" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11426" sboTerm="SBO:0000627" id="R_MAR11426" name="Exchange of 1, 4-Butanediammonium" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -456773,7 +455761,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11426">
+            <rdf:Description rdf:about="#R_MAR11426">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_ptrc_e"/>
@@ -456785,10 +455773,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02812e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02812e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR11427" sboTerm="SBO:0000627" id="MAR11427" name="Exchange of Spermidine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11427" sboTerm="SBO:0000627" id="R_MAR11427" name="Exchange of Spermidine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -456796,7 +455784,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11427">
+            <rdf:Description rdf:about="#R_MAR11427">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_spmd_e"/>
@@ -456808,10 +455796,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02923e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02923e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR11428" sboTerm="SBO:0000627" id="MAR11428" name="Exchange of Xanthine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11428" sboTerm="SBO:0000627" id="R_MAR11428" name="Exchange of Xanthine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -456819,7 +455807,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11428">
+            <rdf:Description rdf:about="#R_MAR11428">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_xan_e"/>
@@ -456831,10 +455819,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03148e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03148e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR11429" sboTerm="SBO:0000176" id="MAR11429" name="2-Methylisocitrate Dehydratase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11429" sboTerm="SBO:0000176" id="R_MAR11429" name="2-Methylisocitrate Dehydratase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -456843,7 +455831,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11429">
+            <rdf:Description rdf:about="#R_MAR11429">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.99"/>
@@ -456856,14 +455844,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03193c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03193c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03771c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03771c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11430" sboTerm="SBO:0000176" id="MAR11430" name="Oxaloacetate Decarboxylase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11430" sboTerm="SBO:0000176" id="R_MAR11430" name="Oxaloacetate Decarboxylase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -456871,7 +455859,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11430">
+            <rdf:Description rdf:about="#R_MAR11430">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/OAADC"/>
@@ -456885,15 +455873,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02633c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02633c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01596c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02819c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01596c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02819c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11431" sboTerm="SBO:0000627" id="MAR11431" name="Exchange of 4-Hydroxybenzoate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11431" sboTerm="SBO:0000627" id="R_MAR11431" name="Exchange of 4-Hydroxybenzoate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -456901,7 +455889,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11431">
+            <rdf:Description rdf:about="#R_MAR11431">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_4hbz_e"/>
@@ -456913,10 +455901,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00995e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00995e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR11432" sboTerm="SBO:0000627" id="MAR11432" name="Exchange of 34Dhpha" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11432" sboTerm="SBO:0000627" id="R_MAR11432" name="Exchange of 34Dhpha" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -456924,7 +455912,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11432">
+            <rdf:Description rdf:about="#R_MAR11432">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_34dhpha_e"/>
@@ -456935,10 +455923,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00729e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00729e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR11433" sboTerm="SBO:0000185" id="MAR11433" name="Thiamine Transport in via Proton Antiport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11433" sboTerm="SBO:0000185" id="R_MAR11433" name="Thiamine Transport in via Proton Antiport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -456946,7 +455934,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11433">
+            <rdf:Description rdf:about="#R_MAR11433">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/THMt3"/>
@@ -456958,12 +455946,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02982e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02982e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02982c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02982c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -456972,7 +455960,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR11434" sboTerm="SBO:0000627" id="MAR11434" name="Exchange of Menaquinone 8" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11434" sboTerm="SBO:0000627" id="R_MAR11434" name="Exchange of Menaquinone 8" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -456980,7 +455968,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11434">
+            <rdf:Description rdf:about="#R_MAR11434">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_mqn8_e"/>
@@ -456991,10 +455979,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03775e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03775e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR11435" sboTerm="SBO:0000185" id="MAR11435" name="Menaquinone Secretion/ Uptake (Menaquinone 8)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11435" sboTerm="SBO:0000185" id="R_MAR11435" name="Menaquinone Secretion/ Uptake (Menaquinone 8)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -457003,7 +455991,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11435">
+            <rdf:Description rdf:about="#R_MAR11435">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/MK8t"/>
@@ -457014,13 +456002,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03775c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03775c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03775e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03775e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11436" sboTerm="SBO:0000627" id="MAR11436" name="Exchange of Indole" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11436" sboTerm="SBO:0000627" id="R_MAR11436" name="Exchange of Indole" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -457028,7 +456016,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11436">
+            <rdf:Description rdf:about="#R_MAR11436">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/EX_indole[e]"/>
@@ -457038,10 +456026,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03701e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03701e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR11437" sboTerm="SBO:0000627" id="MAR11437" name="Exchange of Methanethiol" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11437" sboTerm="SBO:0000627" id="R_MAR11437" name="Exchange of Methanethiol" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -457049,7 +456037,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11437">
+            <rdf:Description rdf:about="#R_MAR11437">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/EX_ch4s[e]"/>
@@ -457059,10 +456047,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03510e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03510e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR11438" sboTerm="SBO:0000627" id="MAR11438" name="Exchange of Phenylpyruvate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11438" sboTerm="SBO:0000627" id="R_MAR11438" name="Exchange of Phenylpyruvate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -457070,7 +456058,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11438">
+            <rdf:Description rdf:about="#R_MAR11438">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_phpyr_e"/>
@@ -457081,10 +456069,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02725e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02725e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR11439" sboTerm="SBO:0000627" id="MAR11439" name="Exchange of Tyramine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11439" sboTerm="SBO:0000627" id="R_MAR11439" name="Exchange of Tyramine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -457092,7 +456080,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11439">
+            <rdf:Description rdf:about="#R_MAR11439">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_tym_e"/>
@@ -457104,10 +456092,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03099e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03099e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR11440" sboTerm="SBO:0000627" id="MAR11440" name="2-Hydroxyphenylacetate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11440" sboTerm="SBO:0000627" id="R_MAR11440" name="2-Hydroxyphenylacetate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -457115,7 +456103,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11440">
+            <rdf:Description rdf:about="#R_MAR11440">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_2hyoxplac_e"/>
@@ -457126,10 +456114,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00654e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00654e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR11441" sboTerm="SBO:0000627" id="MAR11441" name="Exchange of Lanosterol" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11441" sboTerm="SBO:0000627" id="R_MAR11441" name="Exchange of Lanosterol" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -457137,7 +456125,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11441">
+            <rdf:Description rdf:about="#R_MAR11441">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_lanost_e"/>
@@ -457149,10 +456137,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02336e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02336e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR11442" sboTerm="SBO:0000185" id="MAR11442" name="Transport of Phenylpyruvate via Proton Symport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11442" sboTerm="SBO:0000185" id="R_MAR11442" name="Transport of Phenylpyruvate via Proton Symport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -457161,7 +456149,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11442">
+            <rdf:Description rdf:about="#R_MAR11442">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PHPYRte"/>
@@ -457172,18 +456160,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02725e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02725e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02725c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02725c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="hrm"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR11443" sboTerm="SBO:0000185" id="MAR11443" name="Transport of Phenylpyruvate via Proton Symport, Mitochondrial" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11443" sboTerm="SBO:0000185" id="R_MAR11443" name="Transport of Phenylpyruvate via Proton Symport, Mitochondrial" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -457192,7 +456180,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11443">
+            <rdf:Description rdf:about="#R_MAR11443">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PHPYRtm"/>
@@ -457203,12 +456191,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02725m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02725m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02725c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02725c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:and>
@@ -457220,7 +456208,7 @@
           </fbc:and>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR11444" sboTerm="SBO:0000185" id="MAR11444" name="Transport of 3-Methoxy-4-Hydroxymandelate, Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11444" sboTerm="SBO:0000185" id="R_MAR11444" name="Transport of 3-Methoxy-4-Hydroxymandelate, Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -457229,7 +456217,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11444">
+            <rdf:Description rdf:about="#R_MAR11444">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/3MOX4HOXMtm"/>
@@ -457239,13 +456227,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03136m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03136m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03136c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03136c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11445" sboTerm="SBO:0000185" id="MAR11445" name="Transport 3-Methoxy-4-Hydroxymandelate, Extracellular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11445" sboTerm="SBO:0000185" id="R_MAR11445" name="Transport 3-Methoxy-4-Hydroxymandelate, Extracellular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -457254,7 +456242,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11445">
+            <rdf:Description rdf:about="#R_MAR11445">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/3MOX4HOXMte"/>
@@ -457265,13 +456253,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03136c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03136c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03136e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03136e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11446" sboTerm="SBO:0000627" id="MAR11446" name="Exchange of 3-Methoxy-4-Hydroxymandelate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11446" sboTerm="SBO:0000627" id="R_MAR11446" name="Exchange of 3-Methoxy-4-Hydroxymandelate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -457279,7 +456267,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11446">
+            <rdf:Description rdf:about="#R_MAR11446">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_3mox4hoxm_e"/>
@@ -457290,10 +456278,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03136e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03136e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR11447" sboTerm="SBO:0000185" id="MAR11447" name="Transport of Glyoxylate, Extracellular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11447" sboTerm="SBO:0000185" id="R_MAR11447" name="Transport of Glyoxylate, Extracellular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -457302,7 +456290,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11447">
+            <rdf:Description rdf:about="#R_MAR11447">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GLXt"/>
@@ -457314,13 +456302,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02007c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02007c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02007e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02007e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11448" sboTerm="SBO:0000627" id="MAR11448" name="Exchange of Glyoxylate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11448" sboTerm="SBO:0000627" id="R_MAR11448" name="Exchange of Glyoxylate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -457328,7 +456316,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11448">
+            <rdf:Description rdf:about="#R_MAR11448">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_glx_e"/>
@@ -457340,10 +456328,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02007e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02007e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR11449" sboTerm="SBO:0000185" id="MAR11449" name="2-Methylbutyrylglycine Transport, Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11449" sboTerm="SBO:0000185" id="R_MAR11449" name="2-Methylbutyrylglycine Transport, Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -457351,7 +456339,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11449">
+            <rdf:Description rdf:about="#R_MAR11449">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CE4970tm"/>
@@ -457362,13 +456350,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00664m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00664m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00664c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00664c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11450" sboTerm="SBO:0000185" id="MAR11450" name="2-Methylbutyrylglycine Transport, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11450" sboTerm="SBO:0000185" id="R_MAR11450" name="2-Methylbutyrylglycine Transport, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -457377,7 +456365,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11450">
+            <rdf:Description rdf:about="#R_MAR11450">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CE4970te"/>
@@ -457388,20 +456376,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01442c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM00664c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01442c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM00664c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01442e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM00664e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01442e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM00664e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="GlyT"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR11451" sboTerm="SBO:0000627" id="MAR11451" name="Exchange of 2-Methylbutyrylglycine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11451" sboTerm="SBO:0000627" id="R_MAR11451" name="Exchange of 2-Methylbutyrylglycine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -457409,7 +456397,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11451">
+            <rdf:Description rdf:about="#R_MAR11451">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_CE4970_e"/>
@@ -457420,10 +456408,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00664e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00664e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR11452" sboTerm="SBO:0000185" id="MAR11452" name="3-Methyl-Crotonyl-Glycine Transport, Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11452" sboTerm="SBO:0000185" id="R_MAR11452" name="3-Methyl-Crotonyl-Glycine Transport, Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -457431,7 +456419,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11452">
+            <rdf:Description rdf:about="#R_MAR11452">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CE2026tm"/>
@@ -457442,13 +456430,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00825m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00825m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00825c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00825c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11453" sboTerm="SBO:0000185" id="MAR11453" name="3-Methyl-Crotonyl-Glycine Transport, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11453" sboTerm="SBO:0000185" id="R_MAR11453" name="3-Methyl-Crotonyl-Glycine Transport, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -457457,7 +456445,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11453">
+            <rdf:Description rdf:about="#R_MAR11453">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CE2026te"/>
@@ -457468,20 +456456,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01442c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM00825c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01442c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM00825c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01442e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM00825e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01442e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM00825e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="GlyT"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR11454" sboTerm="SBO:0000627" id="MAR11454" name="Exchange of 3-Methyl-Crotonyl-Glycine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11454" sboTerm="SBO:0000627" id="R_MAR11454" name="Exchange of 3-Methyl-Crotonyl-Glycine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -457489,7 +456477,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11454">
+            <rdf:Description rdf:about="#R_MAR11454">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_CE2026_e"/>
@@ -457500,10 +456488,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00825e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00825e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR11455" sboTerm="SBO:0000185" id="MAR11455" name="Isovalerylglycine Transport, Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11455" sboTerm="SBO:0000185" id="R_MAR11455" name="Isovalerylglycine Transport, Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -457511,7 +456499,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11455">
+            <rdf:Description rdf:about="#R_MAR11455">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CE4968tm"/>
@@ -457522,13 +456510,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02190m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02190m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02190c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02190c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11456" sboTerm="SBO:0000185" id="MAR11456" name="Isovalerylglycine Transport, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11456" sboTerm="SBO:0000185" id="R_MAR11456" name="Isovalerylglycine Transport, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -457537,7 +456525,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11456">
+            <rdf:Description rdf:about="#R_MAR11456">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CE4968te"/>
@@ -457548,20 +456536,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01442c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM02190c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01442c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM02190c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01442e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM02190e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01442e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM02190e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="GlyT"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR11457" sboTerm="SBO:0000627" id="MAR11457" name="Exchange of Isovalerylglycine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11457" sboTerm="SBO:0000627" id="R_MAR11457" name="Exchange of Isovalerylglycine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -457569,7 +456557,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11457">
+            <rdf:Description rdf:about="#R_MAR11457">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_CE4968_e"/>
@@ -457580,10 +456568,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02190e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02190e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR11458" sboTerm="SBO:0000176" id="MAR11458" name="Acetylation of Tyrosine" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11458" sboTerm="SBO:0000176" id="R_MAR11458" name="Acetylation of Tyrosine" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -457592,7 +456580,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11458">
+            <rdf:Description rdf:about="#R_MAR11458">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.1"/>
@@ -457604,16 +456592,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01261m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03101m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03101m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03407m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03407m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11459" sboTerm="SBO:0000185" id="MAR11459" name="Transport of N-Acetyl-Tyrosine into Cytosol" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11459" sboTerm="SBO:0000185" id="R_MAR11459" name="Transport of N-Acetyl-Tyrosine into Cytosol" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -457622,7 +456610,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11459">
+            <rdf:Description rdf:about="#R_MAR11459">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ACTYRtc"/>
@@ -457633,13 +456621,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03407m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03407m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03407c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03407c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11460" sboTerm="SBO:0000185" id="MAR11460" name="Secretion of N-Acetyl-Tyrosine" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11460" sboTerm="SBO:0000185" id="R_MAR11460" name="Secretion of N-Acetyl-Tyrosine" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -457648,7 +456636,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11460">
+            <rdf:Description rdf:about="#R_MAR11460">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ACTYRte"/>
@@ -457659,13 +456647,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03407c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03407c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03407e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03407e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11461" sboTerm="SBO:0000627" id="MAR11461" name="Exchange of N-Acetyl-Tyrosine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11461" sboTerm="SBO:0000627" id="R_MAR11461" name="Exchange of N-Acetyl-Tyrosine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -457673,7 +456661,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11461">
+            <rdf:Description rdf:about="#R_MAR11461">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_actyr_e"/>
@@ -457684,10 +456672,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03407e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03407e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR11462" sboTerm="SBO:0000176" id="MAR11462" name="Alternative Route for Formation of Succinylacetone, from Fumarylacetoacetate" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11462" sboTerm="SBO:0000176" id="R_MAR11462" name="Alternative Route for Formation of Succinylacetone, from Fumarylacetoacetate" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -457696,7 +456684,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11462">
+            <rdf:Description rdf:about="#R_MAR11462">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/SUCACETATc"/>
@@ -457707,16 +456695,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01863c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01863c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02552c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03956c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03956c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11463" sboTerm="SBO:0000176" id="MAR11463" name="Alternative Route for Formation of Succinylacetone, from Maleylacetoacetate" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11463" sboTerm="SBO:0000176" id="R_MAR11463" name="Alternative Route for Formation of Succinylacetone, from Maleylacetoacetate" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -457725,7 +456713,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11463">
+            <rdf:Description rdf:about="#R_MAR11463">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/SUCACETATALTc"/>
@@ -457736,16 +456724,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01010c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01010c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02552c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03956c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03956c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11464" sboTerm="SBO:0000176" id="MAR11464" name="Alternative Route for Formation of Succinylacetone, from Succinyl-Acetoacetate" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11464" sboTerm="SBO:0000176" id="R_MAR11464" name="Alternative Route for Formation of Succinylacetone, from Succinyl-Acetoacetate" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -457754,7 +456742,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11464">
+            <rdf:Description rdf:about="#R_MAR11464">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/SUCACETOc"/>
@@ -457765,15 +456753,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03956c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03956c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01596c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03957c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01596c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03957c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11465" sboTerm="SBO:0000185" id="MAR11465" name="Transport of Succinylacetone" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11465" sboTerm="SBO:0000185" id="R_MAR11465" name="Transport of Succinylacetone" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -457782,7 +456770,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11465">
+            <rdf:Description rdf:about="#R_MAR11465">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/SUCACETOte"/>
@@ -457793,13 +456781,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03957c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03957c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03957e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03957e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11466" sboTerm="SBO:0000627" id="MAR11466" name="Exchange of Succinylacetone" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11466" sboTerm="SBO:0000627" id="R_MAR11466" name="Exchange of Succinylacetone" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -457807,7 +456795,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11466">
+            <rdf:Description rdf:about="#R_MAR11466">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_sucaceto_e"/>
@@ -457818,10 +456806,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03957e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03957e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR11467" sboTerm="SBO:0000176" id="MAR11467" name="Formation of Vanilpyruvic Acid from Vanilalanine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11467" sboTerm="SBO:0000176" id="R_MAR11467" name="Formation of Vanilpyruvic Acid from Vanilalanine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -457829,7 +456817,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11467">
+            <rdf:Description rdf:about="#R_MAR11467">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.6.1.2"/>
@@ -457841,18 +456829,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00830c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01306c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00830c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01306c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01974c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM04073c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01974c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04073c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG1640"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR11468" sboTerm="SBO:0000176" id="MAR11468" name="Formation of Vanil-Lactate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11468" sboTerm="SBO:0000176" id="R_MAR11468" name="Formation of Vanil-Lactate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -457860,7 +456848,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11468">
+            <rdf:Description rdf:about="#R_MAR11468">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/VANILLACc"/>
@@ -457871,16 +456859,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM04073c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04073c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02552c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM04072c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04072c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11469" sboTerm="SBO:0000185" id="MAR11469" name="Transport of 3-Methoxy-Tyrosine into Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11469" sboTerm="SBO:0000185" id="R_MAR11469" name="Transport of 3-Methoxy-Tyrosine into Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -457888,7 +456876,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11469">
+            <rdf:Description rdf:about="#R_MAR11469">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CE2176tm"/>
@@ -457899,13 +456887,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00830c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00830c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00830m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00830m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11470" sboTerm="SBO:0000176" id="MAR11470" name="Acetylation of 3-Methoxy-Tyrosine" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11470" sboTerm="SBO:0000176" id="R_MAR11470" name="Acetylation of 3-Methoxy-Tyrosine" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -457913,7 +456901,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11470">
+            <rdf:Description rdf:about="#R_MAR11470">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/NACVANALAm"/>
@@ -457924,16 +456912,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01261m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00830m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00830m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03778m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03778m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11471" sboTerm="SBO:0000185" id="MAR11471" name="Transport of Acetyl-Vanilalanine" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11471" sboTerm="SBO:0000185" id="R_MAR11471" name="Transport of Acetyl-Vanilalanine" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -457941,7 +456929,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11471">
+            <rdf:Description rdf:about="#R_MAR11471">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/NACVANALAtm"/>
@@ -457952,13 +456940,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03778m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03778m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03778c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03778c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11472" sboTerm="SBO:0000185" id="MAR11472" name="Secretion of Acetyl-Vanilalanine" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11472" sboTerm="SBO:0000185" id="R_MAR11472" name="Secretion of Acetyl-Vanilalanine" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -457966,7 +456954,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11472">
+            <rdf:Description rdf:about="#R_MAR11472">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/NACVANALAte"/>
@@ -457977,13 +456965,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03778c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03778c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03778e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03778e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11473" sboTerm="SBO:0000185" id="MAR11473" name="Secretion of Vanil-Lactate" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11473" sboTerm="SBO:0000185" id="R_MAR11473" name="Secretion of Vanil-Lactate" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -457991,7 +456979,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11473">
+            <rdf:Description rdf:about="#R_MAR11473">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/VANILLACte"/>
@@ -458002,13 +456990,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM04072c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04072c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM04072e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04072e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11474" sboTerm="SBO:0000627" id="MAR11474" name="Exchange of Vanil-Lactate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11474" sboTerm="SBO:0000627" id="R_MAR11474" name="Exchange of Vanil-Lactate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -458016,7 +457004,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11474">
+            <rdf:Description rdf:about="#R_MAR11474">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_vanillac_e"/>
@@ -458027,10 +457015,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM04072e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04072e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR11475" sboTerm="SBO:0000627" id="MAR11475" name="Exchange of Acetyl-Vanilalanine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11475" sboTerm="SBO:0000627" id="R_MAR11475" name="Exchange of Acetyl-Vanilalanine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -458038,7 +457026,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11475">
+            <rdf:Description rdf:about="#R_MAR11475">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_nacvanala_e"/>
@@ -458049,10 +457037,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03778e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03778e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR11476" sboTerm="SBO:0000176" id="MAR11476" name="Formation of 2-Hydroxy-3-Methyl-Valerate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11476" sboTerm="SBO:0000176" id="R_MAR11476" name="Formation of 2-Hydroxy-3-Methyl-Valerate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -458062,7 +457050,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11476">
+            <rdf:Description rdf:about="#R_MAR11476">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.27"/>
@@ -458074,13 +457062,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00669c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00669c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02552c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03176c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03176c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -458089,7 +457077,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR11477" sboTerm="SBO:0000185" id="MAR11477" name="Transport of 2-Hydroxy-3-Methyl-Valerate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11477" sboTerm="SBO:0000185" id="R_MAR11477" name="Transport of 2-Hydroxy-3-Methyl-Valerate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -458097,7 +457085,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11477">
+            <rdf:Description rdf:about="#R_MAR11477">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/2H3MVte"/>
@@ -458108,13 +457096,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03176c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03176c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03176e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03176e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11478" sboTerm="SBO:0000627" id="MAR11478" name="Exchange of 2-Hydroxy-3-Methyl-Valerate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11478" sboTerm="SBO:0000627" id="R_MAR11478" name="Exchange of 2-Hydroxy-3-Methyl-Valerate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -458122,7 +457110,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11478">
+            <rdf:Description rdf:about="#R_MAR11478">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_2h3mv_e"/>
@@ -458133,10 +457121,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03176e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03176e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR11479" sboTerm="SBO:0000176" id="MAR11479" name="Formation of 2-Hydroxy-Isovalerate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11479" sboTerm="SBO:0000176" id="R_MAR11479" name="Formation of 2-Hydroxy-Isovalerate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -458146,7 +457134,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11479">
+            <rdf:Description rdf:about="#R_MAR11479">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.27"/>
@@ -458158,13 +457146,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00824c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00824c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02552c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03186c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03186c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -458173,7 +457161,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR11480" sboTerm="SBO:0000185" id="MAR11480" name="Transport of 2-Hydroxy-Isovalerate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11480" sboTerm="SBO:0000185" id="R_MAR11480" name="Transport of 2-Hydroxy-Isovalerate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -458181,7 +457169,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11480">
+            <rdf:Description rdf:about="#R_MAR11480">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/2HIVte"/>
@@ -458192,13 +457180,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03186c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03186c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03186e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03186e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11481" sboTerm="SBO:0000627" id="MAR11481" name="Exchange of 2-Hydroxy-Isovalerate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11481" sboTerm="SBO:0000627" id="R_MAR11481" name="Exchange of 2-Hydroxy-Isovalerate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -458206,7 +457194,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11481">
+            <rdf:Description rdf:about="#R_MAR11481">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_2hiv_e"/>
@@ -458217,10 +457205,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03186e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03186e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR11482" sboTerm="SBO:0000176" id="MAR11482" name="Formation of 2-Methyl-3-Hydroxy-Butyrate" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11482" sboTerm="SBO:0000176" id="R_MAR11482" name="Formation of 2-Methyl-3-Hydroxy-Butyrate" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -458230,7 +457218,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11482">
+            <rdf:Description rdf:about="#R_MAR11482">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/2M3HBUc"/>
@@ -458241,16 +457229,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00171m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00171m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03189m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03189m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11483" sboTerm="SBO:0000185" id="MAR11483" name="Transport of 2-Methyl-3-Hydroxy-Butyrate, Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11483" sboTerm="SBO:0000185" id="R_MAR11483" name="Transport of 2-Methyl-3-Hydroxy-Butyrate, Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -458258,7 +457246,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11483">
+            <rdf:Description rdf:about="#R_MAR11483">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/2M3HBUtm"/>
@@ -458269,13 +457257,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03189m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03189m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03189c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03189c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11484" sboTerm="SBO:0000185" id="MAR11484" name="Transport of 2-Methyl-3-Hydroxy-Butyrate, Extracellular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11484" sboTerm="SBO:0000185" id="R_MAR11484" name="Transport of 2-Methyl-3-Hydroxy-Butyrate, Extracellular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -458283,7 +457271,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11484">
+            <rdf:Description rdf:about="#R_MAR11484">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/2M3HBUte"/>
@@ -458294,13 +457282,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03189c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03189c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03189e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03189e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11485" sboTerm="SBO:0000627" id="MAR11485" name="Exchange of 2-Methyl-3-Hydroxy-Butyrate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11485" sboTerm="SBO:0000627" id="R_MAR11485" name="Exchange of 2-Methyl-3-Hydroxy-Butyrate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -458308,7 +457296,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11485">
+            <rdf:Description rdf:about="#R_MAR11485">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_2m3hbu_e"/>
@@ -458319,10 +457307,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03189e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03189e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR11486" sboTerm="SBO:0000176" id="MAR11486" name="Formation of 2-Methyl-3-Oxo-Valeryl Coa" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11486" sboTerm="SBO:0000176" id="R_MAR11486" name="Formation of 2-Methyl-3-Oxo-Valeryl Coa" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -458330,7 +457318,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11486">
+            <rdf:Description rdf:about="#R_MAR11486">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.9"/>
@@ -458342,17 +457330,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02774m" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02774m" stoichiometry="2" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03192m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03192m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG10932"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR11487" sboTerm="SBO:0000176" id="MAR11487" name="Formation of 2-Methyl-3-Oxo-Valerate" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11487" sboTerm="SBO:0000176" id="R_MAR11487" name="Formation of 2-Methyl-3-Oxo-Valerate" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -458360,7 +457348,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11487">
+            <rdf:Description rdf:about="#R_MAR11487">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/2M3OVACm"/>
@@ -458371,16 +457359,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03192m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03192m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03191m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03191m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11488" sboTerm="SBO:0000185" id="MAR11488" name="Transport of 2-Methyl-3-Oxo-Valerate, Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11488" sboTerm="SBO:0000185" id="R_MAR11488" name="Transport of 2-Methyl-3-Oxo-Valerate, Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -458388,7 +457376,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11488">
+            <rdf:Description rdf:about="#R_MAR11488">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/2M3OVACtm"/>
@@ -458399,13 +457387,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03191m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03191m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03191c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03191c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11489" sboTerm="SBO:0000176" id="MAR11489" name="Formation of 2-Methyl-3-Hydroxy-Valerate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11489" sboTerm="SBO:0000176" id="R_MAR11489" name="Formation of 2-Methyl-3-Hydroxy-Valerate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -458413,7 +457401,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11489">
+            <rdf:Description rdf:about="#R_MAR11489">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/2M3HVACc"/>
@@ -458424,16 +457412,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03191c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03191c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02552c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03190c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03190c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11490" sboTerm="SBO:0000185" id="MAR11490" name="Transport of 2-Methyl-3-Hydroxy-Valerate" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11490" sboTerm="SBO:0000185" id="R_MAR11490" name="Transport of 2-Methyl-3-Hydroxy-Valerate" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -458441,7 +457429,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11490">
+            <rdf:Description rdf:about="#R_MAR11490">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/2M3HVACte"/>
@@ -458452,13 +457440,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03190c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03190c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03190e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03190e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11491" sboTerm="SBO:0000627" id="MAR11491" name="Exchange of 2-Methyl-3-Hydroxy-Valerate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11491" sboTerm="SBO:0000627" id="R_MAR11491" name="Exchange of 2-Methyl-3-Hydroxy-Valerate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -458466,7 +457454,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11491">
+            <rdf:Description rdf:about="#R_MAR11491">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_2m3hvac_e"/>
@@ -458477,10 +457465,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03190e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03190e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR11492" sboTerm="SBO:0000176" id="MAR11492" name="Formation of 3-Hydroxy-3-Methyl-Glutarate" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11492" sboTerm="SBO:0000176" id="R_MAR11492" name="Formation of 3-Hydroxy-3-Methyl-Glutarate" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -458490,7 +457478,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11492">
+            <rdf:Description rdf:about="#R_MAR11492">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/3H3MGLTc"/>
@@ -458501,16 +457489,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02131c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02131c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03212c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03212c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11493" sboTerm="SBO:0000185" id="MAR11493" name="Transport of 3-Hydroxy-3-Methyl-Glutarate" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11493" sboTerm="SBO:0000185" id="R_MAR11493" name="Transport of 3-Hydroxy-3-Methyl-Glutarate" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -458518,7 +457506,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11493">
+            <rdf:Description rdf:about="#R_MAR11493">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/3H3MGLTte"/>
@@ -458529,13 +457517,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03212c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03212c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03212e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03212e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11494" sboTerm="SBO:0000627" id="MAR11494" name="Exchange of 3-Hydroxy-3-Methyl-Glutarate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11494" sboTerm="SBO:0000627" id="R_MAR11494" name="Exchange of 3-Hydroxy-3-Methyl-Glutarate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -458543,7 +457531,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11494">
+            <rdf:Description rdf:about="#R_MAR11494">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_3h3mglt_e"/>
@@ -458554,10 +457542,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03212e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03212e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR11495" sboTerm="SBO:0000176" id="MAR11495" name="Formation of 3-Methyl-Glutaconate" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11495" sboTerm="SBO:0000176" id="R_MAR11495" name="Formation of 3-Methyl-Glutaconate" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -458567,7 +457555,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11495">
+            <rdf:Description rdf:about="#R_MAR11495">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/3MGLUTACc"/>
@@ -458578,16 +457566,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00827m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00827m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03245m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03245m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11496" sboTerm="SBO:0000185" id="MAR11496" name="Transport of 3-Methyl-Glutaconate, Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11496" sboTerm="SBO:0000185" id="R_MAR11496" name="Transport of 3-Methyl-Glutaconate, Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -458595,7 +457583,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11496">
+            <rdf:Description rdf:about="#R_MAR11496">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/3MGLUTACtm"/>
@@ -458606,13 +457594,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03245m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03245m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03245c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03245c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11497" sboTerm="SBO:0000185" id="MAR11497" name="Transport of 3-Methyl-Glutaconate, Extracellular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11497" sboTerm="SBO:0000185" id="R_MAR11497" name="Transport of 3-Methyl-Glutaconate, Extracellular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -458620,7 +457608,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11497">
+            <rdf:Description rdf:about="#R_MAR11497">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/3MGLUTACte"/>
@@ -458631,13 +457619,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03245c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03245c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03245e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03245e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11498" sboTerm="SBO:0000627" id="MAR11498" name="Exchange of 3-Methyl-Glutaconate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11498" sboTerm="SBO:0000627" id="R_MAR11498" name="Exchange of 3-Methyl-Glutaconate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -458645,7 +457633,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11498">
+            <rdf:Description rdf:about="#R_MAR11498">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_3mglutac_e"/>
@@ -458656,10 +457644,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03245e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03245e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR11499" sboTerm="SBO:0000176" id="MAR11499" name="Formation of 3-Methyl-Glutarate" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11499" sboTerm="SBO:0000176" id="R_MAR11499" name="Formation of 3-Methyl-Glutarate" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -458669,7 +457657,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11499">
+            <rdf:Description rdf:about="#R_MAR11499">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/3MGLUTRc"/>
@@ -458680,16 +457668,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03245c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03245c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03246c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03246c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11500" sboTerm="SBO:0000185" id="MAR11500" name="Transport of 3-Methyl-Glutarate" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11500" sboTerm="SBO:0000185" id="R_MAR11500" name="Transport of 3-Methyl-Glutarate" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -458697,7 +457685,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11500">
+            <rdf:Description rdf:about="#R_MAR11500">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/3MGLUTRte"/>
@@ -458708,13 +457696,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03246c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03246c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03246e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03246e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11501" sboTerm="SBO:0000627" id="MAR11501" name="Exchange of 3-Methyl-Glutarate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11501" sboTerm="SBO:0000627" id="R_MAR11501" name="Exchange of 3-Methyl-Glutarate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -458722,7 +457710,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11501">
+            <rdf:Description rdf:about="#R_MAR11501">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_3mglutr_e"/>
@@ -458733,10 +457721,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03246e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03246e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR11502" sboTerm="SBO:0000176" id="MAR11502" name="Formation of Propionyl-Glycine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11502" sboTerm="SBO:0000176" id="R_MAR11502" name="Formation of Propionyl-Glycine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -458745,7 +457733,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11502">
+            <rdf:Description rdf:about="#R_MAR11502">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.13"/>
@@ -458757,19 +457745,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01986m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02774m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02774m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03886m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03886m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG5783"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR11503" sboTerm="SBO:0000185" id="MAR11503" name="Transport of Propionyl-Glycine, Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11503" sboTerm="SBO:0000185" id="R_MAR11503" name="Transport of Propionyl-Glycine, Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -458777,7 +457765,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11503">
+            <rdf:Description rdf:about="#R_MAR11503">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PPIOGLYtm"/>
@@ -458788,13 +457776,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03886m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03886m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03886c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03886c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11504" sboTerm="SBO:0000185" id="MAR11504" name="Transport of Propionyl-Glycine, Extracellular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11504" sboTerm="SBO:0000185" id="R_MAR11504" name="Transport of Propionyl-Glycine, Extracellular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -458802,7 +457790,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11504">
+            <rdf:Description rdf:about="#R_MAR11504">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PPIOGLYte"/>
@@ -458813,13 +457801,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03886c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03886c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03886e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03886e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11505" sboTerm="SBO:0000627" id="MAR11505" name="Exchange of Propionyl-Glycine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11505" sboTerm="SBO:0000627" id="R_MAR11505" name="Exchange of Propionyl-Glycine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -458827,7 +457815,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11505">
+            <rdf:Description rdf:about="#R_MAR11505">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_ppiogly_e"/>
@@ -458838,10 +457826,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03886e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03886e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR11506" sboTerm="SBO:0000176" id="MAR11506" name="Formation of Mevalonate-Lactone" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11506" sboTerm="SBO:0000176" id="R_MAR11506" name="Formation of Mevalonate-Lactone" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -458850,7 +457838,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11506">
+            <rdf:Description rdf:about="#R_MAR11506">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/MVLACc"/>
@@ -458861,15 +457849,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00167c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00167c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03777c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03777c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11507" sboTerm="SBO:0000185" id="MAR11507" name="Transport of Mevalonate-Lactone" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11507" sboTerm="SBO:0000185" id="R_MAR11507" name="Transport of Mevalonate-Lactone" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -458878,7 +457866,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11507">
+            <rdf:Description rdf:about="#R_MAR11507">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/MVLACte"/>
@@ -458889,13 +457877,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03777c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03777c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03777e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03777e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11508" sboTerm="SBO:0000627" id="MAR11508" name="Exchange of Mevalonate-Lactone" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11508" sboTerm="SBO:0000627" id="R_MAR11508" name="Exchange of Mevalonate-Lactone" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -458903,7 +457891,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11508">
+            <rdf:Description rdf:about="#R_MAR11508">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_mvlac_e"/>
@@ -458914,10 +457902,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03777e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03777e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR11509" sboTerm="SBO:0000176" id="MAR11509" name="Formation of Tiglylglycine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11509" sboTerm="SBO:0000176" id="R_MAR11509" name="Formation of Tiglylglycine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -458926,7 +457914,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11509">
+            <rdf:Description rdf:about="#R_MAR11509">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.13"/>
@@ -458938,19 +457926,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01986m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02999m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02999m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03997m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03997m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG5783"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR11510" sboTerm="SBO:0000185" id="MAR11510" name="Transport of Tiglylglycine, Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11510" sboTerm="SBO:0000185" id="R_MAR11510" name="Transport of Tiglylglycine, Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -458958,7 +457946,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11510">
+            <rdf:Description rdf:about="#R_MAR11510">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/TIGGLYtm"/>
@@ -458969,13 +457957,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03997m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03997m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03997c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03997c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11511" sboTerm="SBO:0000185" id="MAR11511" name="Transport of Tiglylglycine, Extracellular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11511" sboTerm="SBO:0000185" id="R_MAR11511" name="Transport of Tiglylglycine, Extracellular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -458983,7 +457971,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11511">
+            <rdf:Description rdf:about="#R_MAR11511">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/TIGGLYte"/>
@@ -458994,13 +457982,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03997c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03997c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03997e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03997e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11512" sboTerm="SBO:0000627" id="MAR11512" name="Exchange of Tiglylglycine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11512" sboTerm="SBO:0000627" id="R_MAR11512" name="Exchange of Tiglylglycine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -459008,7 +457996,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11512">
+            <rdf:Description rdf:about="#R_MAR11512">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_tiggly_e"/>
@@ -459019,10 +458007,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03997e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03997e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR11513" sboTerm="SBO:0000176" id="MAR11513" name="Acyl Coenzyme A Dehydrogenase for Glutaryl Coenzyme A, Forming Trans-Delta-2-Glutaryl Coenzyme A" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11513" sboTerm="SBO:0000176" id="R_MAR11513" name="Acyl Coenzyme A Dehydrogenase for Glutaryl Coenzyme A, Forming Trans-Delta-2-Glutaryl Coenzyme A" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -459032,7 +458020,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11513">
+            <rdf:Description rdf:about="#R_MAR11513">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/TD2GLTRCOAm"/>
@@ -459043,15 +458031,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01802m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01977m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01802m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01977m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01803m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03964m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01803m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03964m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11514" sboTerm="SBO:0000176" id="MAR11514" name="Acyl Coenzyme A Dehydrogenase for Glutaryl Coenzyme A, Forming 3-Hydroxy-Glutaryl Coenzyme A" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11514" sboTerm="SBO:0000176" id="R_MAR11514" name="Acyl Coenzyme A Dehydrogenase for Glutaryl Coenzyme A, Forming 3-Hydroxy-Glutaryl Coenzyme A" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -459061,7 +458049,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11514">
+            <rdf:Description rdf:about="#R_MAR11514">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/3HGLUTCOAm"/>
@@ -459072,14 +458060,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03964m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03964m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03222m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03222m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11515" sboTerm="SBO:0000176" id="MAR11515" name="Formation of 3-Hydroxy-Glutarate" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11515" sboTerm="SBO:0000176" id="R_MAR11515" name="Formation of 3-Hydroxy-Glutarate" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -459089,7 +458077,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11515">
+            <rdf:Description rdf:about="#R_MAR11515">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/3OHGLUTACm"/>
@@ -459100,16 +458088,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03222m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03222m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03257m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03257m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11516" sboTerm="SBO:0000185" id="MAR11516" name="Transport of 3-Hydroxy-Glutarate, Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11516" sboTerm="SBO:0000185" id="R_MAR11516" name="Transport of 3-Hydroxy-Glutarate, Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -459119,7 +458107,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11516">
+            <rdf:Description rdf:about="#R_MAR11516">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/3OHGLUTACtm"/>
@@ -459130,13 +458118,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03257m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03257m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03257c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03257c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11517" sboTerm="SBO:0000185" id="MAR11517" name="Transport of 3-Hydroxy-Glutarate, Extracellular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11517" sboTerm="SBO:0000185" id="R_MAR11517" name="Transport of 3-Hydroxy-Glutarate, Extracellular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -459146,7 +458134,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11517">
+            <rdf:Description rdf:about="#R_MAR11517">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/3OHGLUTACte"/>
@@ -459157,13 +458145,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03257c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03257c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03257e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03257e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11518" sboTerm="SBO:0000185" id="MAR11518" name="Transport of 3-Hydroxy-Glutarate, Extracellular, Antiport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11518" sboTerm="SBO:0000185" id="R_MAR11518" name="Transport of 3-Hydroxy-Glutarate, Extracellular, Antiport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -459171,7 +458159,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11518">
+            <rdf:Description rdf:about="#R_MAR11518">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/3OHGLUTACOAT3t"/>
@@ -459182,18 +458170,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01306e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03257c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01306e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03257c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01306c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03257e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01306c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03257e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG3168"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR11519" sboTerm="SBO:0000627" id="MAR11519" name="Excahnge of 3-Hydroxy-Glutarate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11519" sboTerm="SBO:0000627" id="R_MAR11519" name="Excahnge of 3-Hydroxy-Glutarate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -459201,7 +458189,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11519">
+            <rdf:Description rdf:about="#R_MAR11519">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_3ohglutac_e"/>
@@ -459212,10 +458200,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03257e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03257e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR11520" sboTerm="SBO:0000176" id="MAR11520" name="Formation of Glutaconyl Coenzyme A" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11520" sboTerm="SBO:0000176" id="R_MAR11520" name="Formation of Glutaconyl Coenzyme A" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -459225,7 +458213,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11520">
+            <rdf:Description rdf:about="#R_MAR11520">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GLUTACOAm"/>
@@ -459236,15 +458224,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01802m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01977m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01802m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01977m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01803m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03613m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01803m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03613m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11521" sboTerm="SBO:0000176" id="MAR11521" name="Formation of Glutaconic Acid" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11521" sboTerm="SBO:0000176" id="R_MAR11521" name="Formation of Glutaconic Acid" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -459254,7 +458242,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11521">
+            <rdf:Description rdf:about="#R_MAR11521">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GLUTCONm"/>
@@ -459265,16 +458253,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03613m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03613m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03615m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03615m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11522" sboTerm="SBO:0000185" id="MAR11522" name="Transport of Glutaconate, Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11522" sboTerm="SBO:0000185" id="R_MAR11522" name="Transport of Glutaconate, Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -459284,7 +458272,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11522">
+            <rdf:Description rdf:about="#R_MAR11522">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GLUTCONtm"/>
@@ -459295,13 +458283,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03615m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03615m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03615c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03615c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11523" sboTerm="SBO:0000185" id="MAR11523" name="Transport of Glutaconate, Extracellular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11523" sboTerm="SBO:0000185" id="R_MAR11523" name="Transport of Glutaconate, Extracellular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -459311,7 +458299,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11523">
+            <rdf:Description rdf:about="#R_MAR11523">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GLUTCONte"/>
@@ -459322,13 +458310,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03615c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03615c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03615e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03615e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11524" sboTerm="SBO:0000627" id="MAR11524" name="Exchange of Glutaconate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11524" sboTerm="SBO:0000627" id="R_MAR11524" name="Exchange of Glutaconate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -459336,7 +458324,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11524">
+            <rdf:Description rdf:about="#R_MAR11524">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_glutcon_e"/>
@@ -459347,10 +458335,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03615e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03615e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR11525" sboTerm="SBO:0000176" id="MAR11525" name="Formation of 3-Hydroxy-Isovalerate" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11525" sboTerm="SBO:0000176" id="R_MAR11525" name="Formation of 3-Hydroxy-Isovalerate" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -459360,7 +458348,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11525">
+            <rdf:Description rdf:about="#R_MAR11525">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/3HIVAcm"/>
@@ -459371,16 +458359,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03242m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03242m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03227m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03227m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11526" sboTerm="SBO:0000185" id="MAR11526" name="Transport of 3-Hydroxy-Isovalerate, Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11526" sboTerm="SBO:0000185" id="R_MAR11526" name="Transport of 3-Hydroxy-Isovalerate, Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -459390,7 +458378,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11526">
+            <rdf:Description rdf:about="#R_MAR11526">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/3HIVActm"/>
@@ -459401,13 +458389,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03227m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03227m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03227c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03227c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11527" sboTerm="SBO:0000185" id="MAR11527" name="Transport of 3-Hydroxy-Isovalerate, Extracellular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11527" sboTerm="SBO:0000185" id="R_MAR11527" name="Transport of 3-Hydroxy-Isovalerate, Extracellular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -459417,7 +458405,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11527">
+            <rdf:Description rdf:about="#R_MAR11527">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/3HIVActe"/>
@@ -459428,13 +458416,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03227c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03227c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03227e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03227e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11528" sboTerm="SBO:0000627" id="MAR11528" name="Exchange of 3-Hydroxy-Isovalerate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11528" sboTerm="SBO:0000627" id="R_MAR11528" name="Exchange of 3-Hydroxy-Isovalerate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -459442,7 +458430,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11528">
+            <rdf:Description rdf:about="#R_MAR11528">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_3hivac_e"/>
@@ -459453,10 +458441,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03227e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03227e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR11529" sboTerm="SBO:0000176" id="MAR11529" name="Formation of 3-Hydroxy-Adipoyl Coa" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11529" sboTerm="SBO:0000176" id="R_MAR11529" name="Formation of 3-Hydroxy-Adipoyl Coa" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -459466,7 +458454,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11529">
+            <rdf:Description rdf:about="#R_MAR11529">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.3.6"/>
@@ -459479,13 +458467,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03409x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03409x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02041x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03213x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03213x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -459497,7 +458485,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR11530" sboTerm="SBO:0000176" id="MAR11530" name="Formation of 3-Hydroxy-Adipate" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11530" sboTerm="SBO:0000176" id="R_MAR11530" name="Formation of 3-Hydroxy-Adipate" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -459507,7 +458495,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11530">
+            <rdf:Description rdf:about="#R_MAR11530">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/3HADPACx"/>
@@ -459518,16 +458506,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03213x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03213x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01597x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03214x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03214x" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11531" sboTerm="SBO:0000185" id="MAR11531" name="Transport of 3-Hydroxy-Adipate, Peroxisomal" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11531" sboTerm="SBO:0000185" id="R_MAR11531" name="Transport of 3-Hydroxy-Adipate, Peroxisomal" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -459537,7 +458525,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11531">
+            <rdf:Description rdf:about="#R_MAR11531">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/3HADPACtxc"/>
@@ -459548,13 +458536,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03214x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03214x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03214c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03214c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11532" sboTerm="SBO:0000185" id="MAR11532" name="Transport of 3-Hydroxy-Adipate, Extracellular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11532" sboTerm="SBO:0000185" id="R_MAR11532" name="Transport of 3-Hydroxy-Adipate, Extracellular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -459564,7 +458552,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11532">
+            <rdf:Description rdf:about="#R_MAR11532">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/3HADPACte"/>
@@ -459575,13 +458563,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03214c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03214c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03214e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03214e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11533" sboTerm="SBO:0000627" id="MAR11533" name="Exchange of 3-Hydroxy-Adipate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11533" sboTerm="SBO:0000627" id="R_MAR11533" name="Exchange of 3-Hydroxy-Adipate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -459589,7 +458577,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11533">
+            <rdf:Description rdf:about="#R_MAR11533">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_3hadpac_e"/>
@@ -459600,10 +458588,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03214e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03214e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR11534" sboTerm="SBO:0000176" id="MAR11534" name="Formation of 3-Hydroxy-Sebacoyl Coa" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11534" sboTerm="SBO:0000176" id="R_MAR11534" name="Formation of 3-Hydroxy-Sebacoyl Coa" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -459612,7 +458600,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11534">
+            <rdf:Description rdf:about="#R_MAR11534">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.3.6"/>
@@ -459625,13 +458613,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03924x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03924x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02041x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03259x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03259x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -459643,7 +458631,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR11535" sboTerm="SBO:0000176" id="MAR11535" name="Formation of 3-Hydroxy-Sebacic Acid" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11535" sboTerm="SBO:0000176" id="R_MAR11535" name="Formation of 3-Hydroxy-Sebacic Acid" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -459652,7 +458640,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11535">
+            <rdf:Description rdf:about="#R_MAR11535">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/3OHSEBACx"/>
@@ -459663,16 +458651,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03259x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03259x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01597x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03258x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03258x" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11536" sboTerm="SBO:0000185" id="MAR11536" name="Transportof 3-Hydroxy-Sebacic Acid, Peroxisomal" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11536" sboTerm="SBO:0000185" id="R_MAR11536" name="Transportof 3-Hydroxy-Sebacic Acid, Peroxisomal" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -459681,7 +458669,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11536">
+            <rdf:Description rdf:about="#R_MAR11536">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/3OHSEBACtxc"/>
@@ -459692,13 +458680,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03258x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03258x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03258c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03258c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11537" sboTerm="SBO:0000185" id="MAR11537" name="Transport of 3-Hydroxy-Sebacic Acid, Extracellular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11537" sboTerm="SBO:0000185" id="R_MAR11537" name="Transport of 3-Hydroxy-Sebacic Acid, Extracellular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -459707,7 +458695,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11537">
+            <rdf:Description rdf:about="#R_MAR11537">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.1"/>
@@ -459719,13 +458707,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03258c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03258c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03258e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03258e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11538" sboTerm="SBO:0000627" id="MAR11538" name="Exchange of 3-Hydroxy-Sebacic Acid" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11538" sboTerm="SBO:0000627" id="R_MAR11538" name="Exchange of 3-Hydroxy-Sebacic Acid" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -459733,7 +458721,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11538">
+            <rdf:Description rdf:about="#R_MAR11538">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_3ohsebac_e"/>
@@ -459744,10 +458732,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03258e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03258e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR11539" sboTerm="SBO:0000176" id="MAR11539" name="Formation of 3-Hydoxy-Suberyl Coa" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11539" sboTerm="SBO:0000176" id="R_MAR11539" name="Formation of 3-Hydoxy-Suberyl Coa" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -459755,7 +458743,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11539">
+            <rdf:Description rdf:about="#R_MAR11539">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.3.6"/>
@@ -459768,13 +458756,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03922x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03922x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02041x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03261x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03261x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -459786,7 +458774,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR11540" sboTerm="SBO:0000176" id="MAR11540" name="Formation of 3-Hydoxy-Suberic Acid" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11540" sboTerm="SBO:0000176" id="R_MAR11540" name="Formation of 3-Hydoxy-Suberic Acid" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -459794,7 +458782,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11540">
+            <rdf:Description rdf:about="#R_MAR11540">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/3OHSUBACx"/>
@@ -459805,16 +458793,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03261x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03261x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01597x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03260x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03260x" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11541" sboTerm="SBO:0000185" id="MAR11541" name="Transport of 3-Hydoxy-Suberic Acid, Peroxisomal" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11541" sboTerm="SBO:0000185" id="R_MAR11541" name="Transport of 3-Hydoxy-Suberic Acid, Peroxisomal" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -459824,7 +458812,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11541">
+            <rdf:Description rdf:about="#R_MAR11541">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/3OHSUBACtxc"/>
@@ -459835,13 +458823,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03260x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03260x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03260c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03260c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11542" sboTerm="SBO:0000185" id="MAR11542" name="Transport of 3-Hydoxy-Suberic Acid, Extracellular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11542" sboTerm="SBO:0000185" id="R_MAR11542" name="Transport of 3-Hydoxy-Suberic Acid, Extracellular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -459851,7 +458839,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11542">
+            <rdf:Description rdf:about="#R_MAR11542">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/3OHSUBACte"/>
@@ -459862,13 +458850,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03260c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03260c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03260e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03260e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11543" sboTerm="SBO:0000627" id="MAR11543" name="Exchange of 3-Hydoxy-Suberic Acid" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11543" sboTerm="SBO:0000627" id="R_MAR11543" name="Exchange of 3-Hydoxy-Suberic Acid" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -459876,7 +458864,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11543">
+            <rdf:Description rdf:about="#R_MAR11543">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_3ohsubac_e"/>
@@ -459887,10 +458875,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03260e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03260e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR11544" sboTerm="SBO:0000176" id="MAR11544" name="Formation of Hexanoic Acid" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11544" sboTerm="SBO:0000176" id="R_MAR11544" name="Formation of Hexanoic Acid" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -459900,7 +458888,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11544">
+            <rdf:Description rdf:about="#R_MAR11544">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CAPROICc"/>
@@ -459911,16 +458899,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02122c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02122c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02120c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02120c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11545" sboTerm="SBO:0000176" id="MAR11545" name="Formation of 5-Hydroxy-Hexanoate" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11545" sboTerm="SBO:0000176" id="R_MAR11545" name="Formation of 5-Hydroxy-Hexanoate" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -459930,7 +458918,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11545">
+            <rdf:Description rdf:about="#R_MAR11545">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/5OHHEXAc"/>
@@ -459941,18 +458929,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02120c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02120c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03287c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03287c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11546" sboTerm="SBO:0000185" id="MAR11546" name="Transport of 5-Hydroxy-Hexanoate, Extracellular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11546" sboTerm="SBO:0000185" id="R_MAR11546" name="Transport of 5-Hydroxy-Hexanoate, Extracellular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -459962,7 +458950,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11546">
+            <rdf:Description rdf:about="#R_MAR11546">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.6.1.2"/>
@@ -459974,13 +458962,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03287c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03287c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03287e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03287e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11547" sboTerm="SBO:0000627" id="MAR11547" name="Exchange of 5-Hydroxy-Hexanoate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11547" sboTerm="SBO:0000627" id="R_MAR11547" name="Exchange of 5-Hydroxy-Hexanoate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -459988,7 +458976,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11547">
+            <rdf:Description rdf:about="#R_MAR11547">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_5ohhexa_e"/>
@@ -459999,10 +458987,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03287e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03287e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR11548" sboTerm="SBO:0000176" id="MAR11548" name="Formation of 7-Hydroxy-Octanoate" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11548" sboTerm="SBO:0000176" id="R_MAR11548" name="Formation of 7-Hydroxy-Octanoate" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -460011,7 +458999,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11548">
+            <rdf:Description rdf:about="#R_MAR11548">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/7OHOCTAc"/>
@@ -460022,18 +459010,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02642c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02642c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03314c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03314c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11549" sboTerm="SBO:0000185" id="MAR11549" name="Transport of 7-Hydroxy-Octanoate, Extracellular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11549" sboTerm="SBO:0000185" id="R_MAR11549" name="Transport of 7-Hydroxy-Octanoate, Extracellular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -460042,7 +459030,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11549">
+            <rdf:Description rdf:about="#R_MAR11549">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/7OHOCTAte"/>
@@ -460053,13 +459041,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03314c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03314c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03314e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03314e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11550" sboTerm="SBO:0000627" id="MAR11550" name="Exchange of 7-Hydroxy-Octanoate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11550" sboTerm="SBO:0000627" id="R_MAR11550" name="Exchange of 7-Hydroxy-Octanoate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -460067,7 +459055,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11550">
+            <rdf:Description rdf:about="#R_MAR11550">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_7ohocata_e"/>
@@ -460078,10 +459066,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03314e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03314e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR11551" sboTerm="SBO:0000176" id="MAR11551" name="Formation of Ethylmalonyl Coa" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11551" sboTerm="SBO:0000176" id="R_MAR11551" name="Formation of Ethylmalonyl Coa" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -460090,7 +459078,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11551">
+            <rdf:Description rdf:about="#R_MAR11551">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ETHMALCOAc"/>
@@ -460101,15 +459089,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01412c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01596c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01412c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01596c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03576c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03576c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11552" sboTerm="SBO:0000176" id="MAR11552" name="Formation of Ethylmalonic Acid" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11552" sboTerm="SBO:0000176" id="R_MAR11552" name="Formation of Ethylmalonic Acid" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -460118,7 +459106,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11552">
+            <rdf:Description rdf:about="#R_MAR11552">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ETHMALACc"/>
@@ -460129,16 +459117,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03576c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03576c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03575c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03575c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11553" sboTerm="SBO:0000185" id="MAR11553" name="Transport of Ethylmalonic Acid" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11553" sboTerm="SBO:0000185" id="R_MAR11553" name="Transport of Ethylmalonic Acid" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -460147,7 +459135,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11553">
+            <rdf:Description rdf:about="#R_MAR11553">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ETHMALACte"/>
@@ -460158,13 +459146,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03575c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03575c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03575e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03575e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11554" sboTerm="SBO:0000627" id="MAR11554" name="Exchange of Ethylmalonic Acid" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11554" sboTerm="SBO:0000627" id="R_MAR11554" name="Exchange of Ethylmalonic Acid" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -460172,7 +459160,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11554">
+            <rdf:Description rdf:about="#R_MAR11554">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_ethmalac_e"/>
@@ -460183,10 +459171,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03575e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03575e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR11555" sboTerm="SBO:0000176" id="MAR11555" name="Formation of Hexanoyl-Glycine" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11555" sboTerm="SBO:0000176" id="R_MAR11555" name="Formation of Hexanoyl-Glycine" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -460195,7 +459183,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11555">
+            <rdf:Description rdf:about="#R_MAR11555">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.13"/>
@@ -460207,19 +459195,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01986c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02122c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02122c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03660c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03660c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG5783"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR11556" sboTerm="SBO:0000185" id="MAR11556" name="Transport of Hexanoyl-Glycine" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11556" sboTerm="SBO:0000185" id="R_MAR11556" name="Transport of Hexanoyl-Glycine" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -460228,7 +459216,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11556">
+            <rdf:Description rdf:about="#R_MAR11556">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/HEXGLYte"/>
@@ -460239,13 +459227,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03660c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03660c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03660e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03660e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11557" sboTerm="SBO:0000627" id="MAR11557" name="Exchange of Hexanoyl-Glycine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11557" sboTerm="SBO:0000627" id="R_MAR11557" name="Exchange of Hexanoyl-Glycine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -460253,7 +459241,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11557">
+            <rdf:Description rdf:about="#R_MAR11557">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_hexgly_e"/>
@@ -460264,10 +459252,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03660e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03660e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR11558" sboTerm="SBO:0000176" id="MAR11558" name="Formation of Methyl-Succinyl Coa" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11558" sboTerm="SBO:0000176" id="R_MAR11558" name="Formation of Methyl-Succinyl Coa" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -460276,7 +459264,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11558">
+            <rdf:Description rdf:about="#R_MAR11558">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.27"/>
@@ -460288,13 +459276,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03576c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03576c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03766c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03766c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11559" sboTerm="SBO:0000176" id="MAR11559" name="Formation of Methyl-Succinate" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11559" sboTerm="SBO:0000176" id="R_MAR11559" name="Formation of Methyl-Succinate" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -460303,7 +459291,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11559">
+            <rdf:Description rdf:about="#R_MAR11559">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/METHSUCC"/>
@@ -460314,16 +459302,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03766c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03766c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03765c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03765c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11560" sboTerm="SBO:0000185" id="MAR11560" name="Transport of Methyl-Succinate" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11560" sboTerm="SBO:0000185" id="R_MAR11560" name="Transport of Methyl-Succinate" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -460332,7 +459320,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11560">
+            <rdf:Description rdf:about="#R_MAR11560">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/METHSUCCte"/>
@@ -460343,13 +459331,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03765c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03765c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03765e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03765e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11561" sboTerm="SBO:0000627" id="MAR11561" name="Exchange of Methyl-Succinate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11561" sboTerm="SBO:0000627" id="R_MAR11561" name="Exchange of Methyl-Succinate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -460357,7 +459345,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11561">
+            <rdf:Description rdf:about="#R_MAR11561">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_methsucc_e"/>
@@ -460368,10 +459356,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03765e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03765e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR11562" sboTerm="SBO:0000176" id="MAR11562" name="Formation of Suberyl-Glycine" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11562" sboTerm="SBO:0000176" id="R_MAR11562" name="Formation of Suberyl-Glycine" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -460380,7 +459368,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11562">
+            <rdf:Description rdf:about="#R_MAR11562">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.13"/>
@@ -460392,19 +459380,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01986c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03922c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03922c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03955c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03955c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG5783"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR11563" sboTerm="SBO:0000185" id="MAR11563" name="Transport of Suberyl-Glycine" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11563" sboTerm="SBO:0000185" id="R_MAR11563" name="Transport of Suberyl-Glycine" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -460413,7 +459401,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11563">
+            <rdf:Description rdf:about="#R_MAR11563">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/SUBGLYte"/>
@@ -460424,13 +459412,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03955c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03955c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03955e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03955e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11564" sboTerm="SBO:0000627" id="MAR11564" name="Exchange of Suberyl-Glycine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11564" sboTerm="SBO:0000627" id="R_MAR11564" name="Exchange of Suberyl-Glycine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -460438,7 +459426,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11564">
+            <rdf:Description rdf:about="#R_MAR11564">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_subgly_e"/>
@@ -460449,10 +459437,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03955e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03955e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR11565" sboTerm="SBO:0000176" id="MAR11565" name="Formation of 4-Hydroxy-Butyrate" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11565" sboTerm="SBO:0000176" id="R_MAR11565" name="Formation of 4-Hydroxy-Butyrate" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -460461,7 +459449,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11565">
+            <rdf:Description rdf:about="#R_MAR11565">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.9"/>
@@ -460473,16 +459461,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02942m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02942m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02552m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03277m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03277m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11566" sboTerm="SBO:0000185" id="MAR11566" name="Transport of 4-Hydroxy-Butyrate, Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11566" sboTerm="SBO:0000185" id="R_MAR11566" name="Transport of 4-Hydroxy-Butyrate, Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -460491,7 +459479,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11566">
+            <rdf:Description rdf:about="#R_MAR11566">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/4OHBUTtmc"/>
@@ -460502,13 +459490,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03277m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03277m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03277c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03277c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11567" sboTerm="SBO:0000185" id="MAR11567" name="Transport of 4-Hydroxy-Butyrate, Extracellular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11567" sboTerm="SBO:0000185" id="R_MAR11567" name="Transport of 4-Hydroxy-Butyrate, Extracellular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -460517,7 +459505,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11567">
+            <rdf:Description rdf:about="#R_MAR11567">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/4OHBUTtce"/>
@@ -460528,13 +459516,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03277c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03277c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03277e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03277e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11568" sboTerm="SBO:0000627" id="MAR11568" name="Exchange of 4-Hydroxy-Butyrate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11568" sboTerm="SBO:0000627" id="R_MAR11568" name="Exchange of 4-Hydroxy-Butyrate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -460542,7 +459530,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11568">
+            <rdf:Description rdf:about="#R_MAR11568">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_4ohbut_e"/>
@@ -460553,10 +459541,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03277e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03277e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR11569" sboTerm="SBO:0000185" id="MAR11569" name="Transport of 12-Hydroperoxyeicosa-5, 8, 10, 14-Tetraenoate, by Diffusion" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11569" sboTerm="SBO:0000185" id="R_MAR11569" name="Transport of 12-Hydroperoxyeicosa-5, 8, 10, 14-Tetraenoate, by Diffusion" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -460565,7 +459553,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11569">
+            <rdf:Description rdf:about="#R_MAR11569">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/12HPETUPKt"/>
@@ -460576,13 +459564,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00309e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00309e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00309c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00309c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11570" sboTerm="SBO:0000185" id="MAR11570" name="Transport of 15(S)-HPETE, Diffusion" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11570" sboTerm="SBO:0000185" id="R_MAR11570" name="Transport of 15(S)-HPETE, Diffusion" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -460591,7 +459579,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11570">
+            <rdf:Description rdf:about="#R_MAR11570">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/15HPETUPKt"/>
@@ -460602,13 +459590,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00380e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00380e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00380c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00380c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11571" sboTerm="SBO:0000185" id="MAR11571" name="3-Amino-Isobutyrate Transport, Sodium Symport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11571" sboTerm="SBO:0000185" id="R_MAR11571" name="3-Amino-Isobutyrate Transport, Sodium Symport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -460617,7 +459605,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11571">
+            <rdf:Description rdf:about="#R_MAR11571">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/3AIBSYMPt"/>
@@ -460628,15 +459616,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02325e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02325e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="2" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02325c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02325c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="2" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11572" sboTerm="SBO:0000185" id="MAR11572" name="1-Alkyl 2-Acylglycerol 3-Phosphocholine Transport" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11572" sboTerm="SBO:0000185" id="R_MAR11572" name="1-Alkyl 2-Acylglycerol 3-Phosphocholine Transport" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -460645,7 +459633,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11572">
+            <rdf:Description rdf:about="#R_MAR11572">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.6.3.44"/>
@@ -460658,15 +459646,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00516c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00516c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00516e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00516e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -460676,7 +459664,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR11573" sboTerm="SBO:0000185" id="MAR11573" name="Hydroxyprogesterone Transport, Active" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11573" sboTerm="SBO:0000185" id="R_MAR11573" name="Hydroxyprogesterone Transport, Active" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -460685,7 +459673,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11573">
+            <rdf:Description rdf:about="#R_MAR11573">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/APRGSTRNABCt"/>
@@ -460696,20 +459684,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00580e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00580e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00580c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00580c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11574" sboTerm="SBO:0000185" id="MAR11574" name="Transport of 11, 12-EET, Diffusion" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11574" sboTerm="SBO:0000185" id="R_MAR11574" name="Transport of 11, 12-EET, Diffusion" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -460718,7 +459706,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11574">
+            <rdf:Description rdf:about="#R_MAR11574">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/C14770UPKt"/>
@@ -460729,13 +459717,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00279e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00279e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00279c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00279c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11575" sboTerm="SBO:0000185" id="MAR11575" name="Transport of 14, 15-EET, Diffusion" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11575" sboTerm="SBO:0000185" id="R_MAR11575" name="Transport of 14, 15-EET, Diffusion" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -460744,7 +459732,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11575">
+            <rdf:Description rdf:about="#R_MAR11575">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/C14771UPKt"/>
@@ -460755,13 +459743,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00366e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00366e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00366c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00366c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11576" sboTerm="SBO:0000185" id="MAR11576" name="Transport of 12S-HHT by Diffusion" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11576" sboTerm="SBO:0000185" id="R_MAR11576" name="Transport of 12S-HHT by Diffusion" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -460770,7 +459758,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11576">
+            <rdf:Description rdf:about="#R_MAR11576">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CE1243UPKt"/>
@@ -460781,13 +459769,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00308e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00308e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00308c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00308c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11577" sboTerm="SBO:0000185" id="MAR11577" name="Transport of 11-Cis-Eicosenoate, Active" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11577" sboTerm="SBO:0000185" id="R_MAR11577" name="Transport of 11-Cis-Eicosenoate, Active" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -460796,7 +459784,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11577">
+            <rdf:Description rdf:about="#R_MAR11577">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CE2510ABCt"/>
@@ -460807,15 +459795,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01584e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01584e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01584c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01584c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -460824,7 +459812,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR11578" sboTerm="SBO:0000185" id="MAR11578" name="Transport of 15-Hydroxy- (8Z, 11Z, 13E)-Eicosatrienoate, Active" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11578" sboTerm="SBO:0000185" id="R_MAR11578" name="Transport of 15-Hydroxy- (8Z, 11Z, 13E)-Eicosatrienoate, Active" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -460833,7 +459821,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11578">
+            <rdf:Description rdf:about="#R_MAR11578">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CE2537ABCt"/>
@@ -460844,15 +459832,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00378e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00378e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00378c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00378c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -460861,7 +459849,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR11579" sboTerm="SBO:0000185" id="MAR11579" name="Transport of 15(S)-HEPE, Diffusion" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11579" sboTerm="SBO:0000185" id="R_MAR11579" name="Transport of 15(S)-HEPE, Diffusion" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -460870,7 +459858,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11579">
+            <rdf:Description rdf:about="#R_MAR11579">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CE7082UPKt"/>
@@ -460881,13 +459869,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00376e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00376e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00376c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00376c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11580" sboTerm="SBO:0000185" id="MAR11580" name="Transport of 14, 15-DIHETE, Diffusion" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11580" sboTerm="SBO:0000185" id="R_MAR11580" name="Transport of 14, 15-DIHETE, Diffusion" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -460896,7 +459884,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11580">
+            <rdf:Description rdf:about="#R_MAR11580">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CE7172UPKt"/>
@@ -460907,13 +459895,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00365e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00365e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00365c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00365c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11581" sboTerm="SBO:0000185" id="MAR11581" name="Transport of 15-Tetracosenoate, Diffusion" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11581" sboTerm="SBO:0000185" id="R_MAR11581" name="Transport of 15-Tetracosenoate, Diffusion" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -460922,7 +459910,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11581">
+            <rdf:Description rdf:about="#R_MAR11581">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/NRVNCABCt"/>
@@ -460933,15 +459921,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02564e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02564e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02564c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02564c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -460950,7 +459938,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR11582" sboTerm="SBO:0000185" id="MAR11582" name="Transport of 1-Alkyl 2-Acteylglycerol 3-Phosphocholine" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11582" sboTerm="SBO:0000185" id="R_MAR11582" name="Transport of 1-Alkyl 2-Acteylglycerol 3-Phosphocholine" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -460959,7 +459947,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11582">
+            <rdf:Description rdf:about="#R_MAR11582">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.6.3.44"/>
@@ -460972,15 +459960,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00626c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00626c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00626e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00626e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -460990,7 +459978,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR11583" sboTerm="SBO:0000185" id="MAR11583" name="Transport of 1-Phosphatidyl-1D-Myo-Inositol" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11583" sboTerm="SBO:0000185" id="R_MAR11583" name="Transport of 1-Phosphatidyl-1D-Myo-Inositol" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -460999,7 +459987,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11583">
+            <rdf:Description rdf:about="#R_MAR11583">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PAIL_hs_SECt"/>
@@ -461010,13 +459998,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02750c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02750c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02750e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02750e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11584" sboTerm="SBO:0000185" id="MAR11584" name="Transport of 1-Palmitoylglycerophosphoinositol" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11584" sboTerm="SBO:0000185" id="R_MAR11584" name="Transport of 1-Palmitoylglycerophosphoinositol" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -461025,7 +460013,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11584">
+            <rdf:Description rdf:about="#R_MAR11584">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PAILPALM_HSSECt"/>
@@ -461036,13 +460024,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03803c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03803c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03803e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03803e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11585" sboTerm="SBO:0000185" id="MAR11585" name="Transport of 1-Arachidonoylglycerophosphoinositol" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11585" sboTerm="SBO:0000185" id="R_MAR11585" name="Transport of 1-Arachidonoylglycerophosphoinositol" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -461051,7 +460039,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11585">
+            <rdf:Description rdf:about="#R_MAR11585">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PAILR_HSSECt"/>
@@ -461062,13 +460050,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03802c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03802c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03802e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03802e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11586" sboTerm="SBO:0000185" id="MAR11586" name="Transport of 1-Stearoylglycerophosphoinositol" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11586" sboTerm="SBO:0000185" id="R_MAR11586" name="Transport of 1-Stearoylglycerophosphoinositol" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -461077,7 +460065,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11586">
+            <rdf:Description rdf:about="#R_MAR11586">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/PAILSTE_HSSECt"/>
@@ -461087,13 +460075,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03804c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03804c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03804e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03804e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11587" sboTerm="SBO:0000185" id="MAR11587" name="Transport of 1-Docosahexenoylglycerophosphocholine (Delta 4, 7, 10, 13, 16, 19), Sn1-Lpc (22:6)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11587" sboTerm="SBO:0000185" id="R_MAR11587" name="Transport of 1-Docosahexenoylglycerophosphocholine (Delta 4, 7, 10, 13, 16, 19), Sn1-Lpc (22:6)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -461102,7 +460090,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11587">
+            <rdf:Description rdf:about="#R_MAR11587">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.6.3.44"/>
@@ -461115,15 +460103,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03827c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03827c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03827e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03827e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -461133,7 +460121,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR11588" sboTerm="SBO:0000185" id="MAR11588" name="Transport of 2-Linoleoylglycerophosphocholine" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11588" sboTerm="SBO:0000185" id="R_MAR11588" name="Transport of 2-Linoleoylglycerophosphocholine" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -461142,7 +460130,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11588">
+            <rdf:Description rdf:about="#R_MAR11588">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.6.3.44"/>
@@ -461155,15 +460143,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03805c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03805c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03805e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03805e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -461173,7 +460161,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR11589" sboTerm="SBO:0000185" id="MAR11589" name="Transport of 2-Oleoylglycerophosphocholine" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11589" sboTerm="SBO:0000185" id="R_MAR11589" name="Transport of 2-Oleoylglycerophosphocholine" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -461182,7 +460170,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11589">
+            <rdf:Description rdf:about="#R_MAR11589">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.6.3.44"/>
@@ -461195,15 +460183,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03806c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03806c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03806e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03806e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -461213,7 +460201,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR11590" sboTerm="SBO:0000185" id="MAR11590" name="Transport of 2-Stearoylglycerophosphocholine" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11590" sboTerm="SBO:0000185" id="R_MAR11590" name="Transport of 2-Stearoylglycerophosphocholine" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -461222,7 +460210,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11590">
+            <rdf:Description rdf:about="#R_MAR11590">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.6.3.44"/>
@@ -461235,15 +460223,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03808c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03808c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03808e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03808e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -461253,7 +460241,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR11591" sboTerm="SBO:0000185" id="MAR11591" name="Transport of 1-Arachidonoyl-Glycero-3-Phosphocholine" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11591" sboTerm="SBO:0000185" id="R_MAR11591" name="Transport of 1-Arachidonoyl-Glycero-3-Phosphocholine" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -461262,7 +460250,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11591">
+            <rdf:Description rdf:about="#R_MAR11591">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.6.3.44"/>
@@ -461275,15 +460263,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03809c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03809c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03809e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03809e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -461293,7 +460281,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR11592" sboTerm="SBO:0000185" id="MAR11592" name="Transport of 1-Docosahexaenoylglycerophosphocholine" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11592" sboTerm="SBO:0000185" id="R_MAR11592" name="Transport of 1-Docosahexaenoylglycerophosphocholine" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -461302,7 +460290,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11592">
+            <rdf:Description rdf:about="#R_MAR11592">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.6.3.44"/>
@@ -461315,15 +460303,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03810c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03810c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03810e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03810e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -461333,7 +460321,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR11593" sboTerm="SBO:0000185" id="MAR11593" name="Transport of 1-Eicosadienoylglycerophosphocholine (Delta 11, 14)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11593" sboTerm="SBO:0000185" id="R_MAR11593" name="Transport of 1-Eicosadienoylglycerophosphocholine (Delta 11, 14)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -461342,7 +460330,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11593">
+            <rdf:Description rdf:about="#R_MAR11593">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.6.3.44"/>
@@ -461355,15 +460343,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03811c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03811c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03811e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03811e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -461373,7 +460361,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR11594" sboTerm="SBO:0000185" id="MAR11594" name="Transport of 1-Eicosatrienoylglycerophosphocholine (Delta 11, 14, 17)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11594" sboTerm="SBO:0000185" id="R_MAR11594" name="Transport of 1-Eicosatrienoylglycerophosphocholine (Delta 11, 14, 17)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -461382,7 +460370,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11594">
+            <rdf:Description rdf:about="#R_MAR11594">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.6.3.44"/>
@@ -461395,15 +460383,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03812c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03812c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03812e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03812e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -461413,7 +460401,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR11595" sboTerm="SBO:0000185" id="MAR11595" name="Transport of 1-Heptadecanoylglycerophosphocholine" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11595" sboTerm="SBO:0000185" id="R_MAR11595" name="Transport of 1-Heptadecanoylglycerophosphocholine" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -461422,7 +460410,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11595">
+            <rdf:Description rdf:about="#R_MAR11595">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.6.3.44"/>
@@ -461435,15 +460423,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03813c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03813c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03813e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03813e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -461453,7 +460441,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR11596" sboTerm="SBO:0000185" id="MAR11596" name="Transport of 1-Linoleoylglycerophosphocholine (Delta 9, 12)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11596" sboTerm="SBO:0000185" id="R_MAR11596" name="Transport of 1-Linoleoylglycerophosphocholine (Delta 9, 12)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -461462,7 +460450,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11596">
+            <rdf:Description rdf:about="#R_MAR11596">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.6.3.44"/>
@@ -461475,15 +460463,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03814c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03814c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03814e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03814e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -461493,7 +460481,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR11597" sboTerm="SBO:0000185" id="MAR11597" name="Transport of 1-Myristoylglycerophosphocholine" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11597" sboTerm="SBO:0000185" id="R_MAR11597" name="Transport of 1-Myristoylglycerophosphocholine" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -461502,7 +460490,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11597">
+            <rdf:Description rdf:about="#R_MAR11597">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.6.3.44"/>
@@ -461515,15 +460503,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03815c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03815c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03815e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03815e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -461533,7 +460521,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR11598" sboTerm="SBO:0000185" id="MAR11598" name="Transport of 1-Pentadecanoylglycerophosphocholine, Sn1-Lpc (15:0)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11598" sboTerm="SBO:0000185" id="R_MAR11598" name="Transport of 1-Pentadecanoylglycerophosphocholine, Sn1-Lpc (15:0)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -461542,7 +460530,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11598">
+            <rdf:Description rdf:about="#R_MAR11598">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.6.3.44"/>
@@ -461555,15 +460543,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03816c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03816c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03816e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03816e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -461573,7 +460561,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR11599" sboTerm="SBO:0000185" id="MAR11599" name="Transport of 1-Octadeca-Trienoylglycerophosphocholine, Sn1-Lpc (18:3, Delta 9, 12, 15)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11599" sboTerm="SBO:0000185" id="R_MAR11599" name="Transport of 1-Octadeca-Trienoylglycerophosphocholine, Sn1-Lpc (18:3, Delta 9, 12, 15)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -461582,7 +460570,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11599">
+            <rdf:Description rdf:about="#R_MAR11599">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.6.3.44"/>
@@ -461595,15 +460583,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03818c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03818c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03818e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03818e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -461613,7 +460601,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR11600" sboTerm="SBO:0000185" id="MAR11600" name="Transport of 1-Octadeca-Trienoylglycerophosphocholine, Sn1-Lpc (18:3, Delta 6, 9, 12)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11600" sboTerm="SBO:0000185" id="R_MAR11600" name="Transport of 1-Octadeca-Trienoylglycerophosphocholine, Sn1-Lpc (18:3, Delta 6, 9, 12)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -461622,7 +460610,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11600">
+            <rdf:Description rdf:about="#R_MAR11600">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.6.3.44"/>
@@ -461635,15 +460623,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03817c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03817c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03817e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03817e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -461653,7 +460641,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR11601" sboTerm="SBO:0000185" id="MAR11601" name="Transport of 1-NoNADecanoylglycerophosphocholine, Sn1-Lpc (19:0)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11601" sboTerm="SBO:0000185" id="R_MAR11601" name="Transport of 1-NoNADecanoylglycerophosphocholine, Sn1-Lpc (19:0)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -461662,7 +460650,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11601">
+            <rdf:Description rdf:about="#R_MAR11601">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.6.3.44"/>
@@ -461675,15 +460663,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03819c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03819c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03819e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03819e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -461693,7 +460681,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR11602" sboTerm="SBO:0000185" id="MAR11602" name="Transport of 1-Eicosenoylglycerophosphocholine (Delta 11) , Sn1-Lpc (20:1)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11602" sboTerm="SBO:0000185" id="R_MAR11602" name="Transport of 1-Eicosenoylglycerophosphocholine (Delta 11) , Sn1-Lpc (20:1)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -461702,7 +460690,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11602">
+            <rdf:Description rdf:about="#R_MAR11602">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.6.3.44"/>
@@ -461715,15 +460703,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03820c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03820c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03820e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03820e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -461733,7 +460721,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR11603" sboTerm="SBO:0000185" id="MAR11603" name="Transport of 1-Dihomo-Linolenoylglycerophosphocholine (20:3, Delta 8, 11, 14), Lysopc A C20:3" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11603" sboTerm="SBO:0000185" id="R_MAR11603" name="Transport of 1-Dihomo-Linolenoylglycerophosphocholine (20:3, Delta 8, 11, 14), Lysopc A C20:3" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -461742,7 +460730,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11603">
+            <rdf:Description rdf:about="#R_MAR11603">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.6.3.44"/>
@@ -461755,15 +460743,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03821c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03821c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03821e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03821e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -461773,7 +460761,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR11604" sboTerm="SBO:0000185" id="MAR11604" name="Transport of 1-Eicosatetraenoylglycerophosphocholine (Delta 8, 11, 14, 17), Sn1-Lpc (20:4)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11604" sboTerm="SBO:0000185" id="R_MAR11604" name="Transport of 1-Eicosatetraenoylglycerophosphocholine (Delta 8, 11, 14, 17), Sn1-Lpc (20:4)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -461782,7 +460770,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11604">
+            <rdf:Description rdf:about="#R_MAR11604">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.6.3.44"/>
@@ -461795,15 +460783,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03822c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03822c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03822e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03822e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -461813,7 +460801,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR11605" sboTerm="SBO:0000185" id="MAR11605" name="Transport of 1-Eicosapentenoylglycerophosphocholine (Delta 5, 8, 11, 14, 17), Sn1-Lpc (20:5)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11605" sboTerm="SBO:0000185" id="R_MAR11605" name="Transport of 1-Eicosapentenoylglycerophosphocholine (Delta 5, 8, 11, 14, 17), Sn1-Lpc (20:5)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -461822,7 +460810,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11605">
+            <rdf:Description rdf:about="#R_MAR11605">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.6.3.44"/>
@@ -461835,15 +460823,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03823c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03823c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03823e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03823e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -461853,7 +460841,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR11606" sboTerm="SBO:0000185" id="MAR11606" name="Transport of 1-Docosatetraenoylglycerophosphocholine (Delta 7, 10, 13, 16), Sn1-Lpc (22:4)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11606" sboTerm="SBO:0000185" id="R_MAR11606" name="Transport of 1-Docosatetraenoylglycerophosphocholine (Delta 7, 10, 13, 16), Sn1-Lpc (22:4)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -461862,7 +460850,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11606">
+            <rdf:Description rdf:about="#R_MAR11606">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.6.3.44"/>
@@ -461875,15 +460863,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03824c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03824c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03824e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03824e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -461893,7 +460881,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR11607" sboTerm="SBO:0000185" id="MAR11607" name="Transport of 1-Docosapentenoylglycerophosphocholine (Delta 7, 10, 13, 16, 19), Sn1-Lpc (22:5)-W3" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11607" sboTerm="SBO:0000185" id="R_MAR11607" name="Transport of 1-Docosapentenoylglycerophosphocholine (Delta 7, 10, 13, 16, 19), Sn1-Lpc (22:5)-W3" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -461902,7 +460890,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11607">
+            <rdf:Description rdf:about="#R_MAR11607">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.6.3.44"/>
@@ -461915,15 +460903,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03826c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03826c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03826e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03826e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -461933,7 +460921,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR11608" sboTerm="SBO:0000185" id="MAR11608" name="Transport of 1-Docosapentenoylglycerophosphocholine (Delta 4, 7, 10, 13, 16), Sn1-Lpc (22:5)-W6" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11608" sboTerm="SBO:0000185" id="R_MAR11608" name="Transport of 1-Docosapentenoylglycerophosphocholine (Delta 4, 7, 10, 13, 16), Sn1-Lpc (22:5)-W6" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -461942,7 +460930,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11608">
+            <rdf:Description rdf:about="#R_MAR11608">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.6.3.44"/>
@@ -461955,15 +460943,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03825c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03825c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03825e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03825e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -461973,7 +460961,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR11609" sboTerm="SBO:0000185" id="MAR11609" name="Transport of 1-Lignocericylglycerophosphocholine (24:0), Lysopc A C24" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11609" sboTerm="SBO:0000185" id="R_MAR11609" name="Transport of 1-Lignocericylglycerophosphocholine (24:0), Lysopc A C24" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -461982,7 +460970,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11609">
+            <rdf:Description rdf:about="#R_MAR11609">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.6.3.44"/>
@@ -461995,15 +460983,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03828c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03828c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03828e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03828e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -462013,7 +461001,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR11610" sboTerm="SBO:0000185" id="MAR11610" name="Transport of 1-Oleoylglycerophosphocholine (Delta 9)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11610" sboTerm="SBO:0000185" id="R_MAR11610" name="Transport of 1-Oleoylglycerophosphocholine (Delta 9)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -462022,7 +461010,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11610">
+            <rdf:Description rdf:about="#R_MAR11610">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.6.3.44"/>
@@ -462035,15 +461023,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03832c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03832c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03832e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03832e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -462053,7 +461041,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR11611" sboTerm="SBO:0000185" id="MAR11611" name="Transport of 1-Palmitoleoylglycerophosphocholine (Delta 9)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11611" sboTerm="SBO:0000185" id="R_MAR11611" name="Transport of 1-Palmitoleoylglycerophosphocholine (Delta 9)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -462062,7 +461050,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11611">
+            <rdf:Description rdf:about="#R_MAR11611">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.6.3.44"/>
@@ -462075,15 +461063,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03834c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03834c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03834e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03834e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -462093,7 +461081,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR11612" sboTerm="SBO:0000185" id="MAR11612" name="Transport of 1-Stearoylglycerophosphocholine" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11612" sboTerm="SBO:0000185" id="R_MAR11612" name="Transport of 1-Stearoylglycerophosphocholine" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -462102,7 +461090,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11612">
+            <rdf:Description rdf:about="#R_MAR11612">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.6.3.44"/>
@@ -462115,15 +461103,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03835c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03835c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03835e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03835e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -462133,7 +461121,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR11613" sboTerm="SBO:0000185" id="MAR11613" name="Transport of 1-Didecanoylglycerophosphoethanolamine (C12:0 Pe)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11613" sboTerm="SBO:0000185" id="R_MAR11613" name="Transport of 1-Didecanoylglycerophosphoethanolamine (C12:0 Pe)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -462142,7 +461130,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11613">
+            <rdf:Description rdf:about="#R_MAR11613">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.6.3.1"/>
@@ -462154,15 +461142,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03838c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03838c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03838e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03838e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -462171,7 +461159,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR11614" sboTerm="SBO:0000185" id="MAR11614" name="Transport of 1-Tridecanoylglycerophosphoethanolamine (C13:0 Pe)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11614" sboTerm="SBO:0000185" id="R_MAR11614" name="Transport of 1-Tridecanoylglycerophosphoethanolamine (C13:0 Pe)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -462180,7 +461168,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11614">
+            <rdf:Description rdf:about="#R_MAR11614">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.6.3.1"/>
@@ -462192,15 +461180,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03839c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03839c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03839e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03839e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -462209,7 +461197,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR11615" sboTerm="SBO:0000185" id="MAR11615" name="Transport of 1-Myristoylglycerophosphoethanolamine (C14:0 Pe)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11615" sboTerm="SBO:0000185" id="R_MAR11615" name="Transport of 1-Myristoylglycerophosphoethanolamine (C14:0 Pe)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -462218,7 +461206,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11615">
+            <rdf:Description rdf:about="#R_MAR11615">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.6.3.1"/>
@@ -462230,15 +461218,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03840c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03840c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03840e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03840e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -462247,7 +461235,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR11616" sboTerm="SBO:0000185" id="MAR11616" name="Transport of 1-Pentadecanoylglycerophosphoethanolamine (C15:0 Pe)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11616" sboTerm="SBO:0000185" id="R_MAR11616" name="Transport of 1-Pentadecanoylglycerophosphoethanolamine (C15:0 Pe)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -462256,7 +461244,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11616">
+            <rdf:Description rdf:about="#R_MAR11616">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.6.3.1"/>
@@ -462268,15 +461256,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03841c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03841c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03841e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03841e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -462285,7 +461273,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR11617" sboTerm="SBO:0000185" id="MAR11617" name="Transport of 1-Hexadecenoylglycerophosphoethanolamine (C16:1 Pe, Delta 9)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11617" sboTerm="SBO:0000185" id="R_MAR11617" name="Transport of 1-Hexadecenoylglycerophosphoethanolamine (C16:1 Pe, Delta 9)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -462294,7 +461282,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11617">
+            <rdf:Description rdf:about="#R_MAR11617">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.6.3.1"/>
@@ -462306,15 +461294,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03842c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03842c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03842e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03842e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -462323,7 +461311,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR11618" sboTerm="SBO:0000185" id="MAR11618" name="Transport of 1-Heptadecanoylglycerophosphoethanolamine (C17:0 Pe)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11618" sboTerm="SBO:0000185" id="R_MAR11618" name="Transport of 1-Heptadecanoylglycerophosphoethanolamine (C17:0 Pe)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -462332,7 +461320,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11618">
+            <rdf:Description rdf:about="#R_MAR11618">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.6.3.1"/>
@@ -462344,15 +461332,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03843c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03843c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03843e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03843e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -462361,7 +461349,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR11619" sboTerm="SBO:0000185" id="MAR11619" name="1-Eicosatrienoylglycerophosphoethanolamine (Delta 11, 14, 17), Lpe (20:3)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11619" sboTerm="SBO:0000185" id="R_MAR11619" name="1-Eicosatrienoylglycerophosphoethanolamine (Delta 11, 14, 17), Lpe (20:3)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -462370,7 +461358,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11619">
+            <rdf:Description rdf:about="#R_MAR11619">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.6.3.1"/>
@@ -462382,15 +461370,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03844c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03844c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03844e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03844e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -462399,7 +461387,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR11620" sboTerm="SBO:0000185" id="MAR11620" name="Transport of 1-Docosahexenoylglyceroethanolamine (Delta 4, 7, 10, 13, 16, 19), Lpe (22:6)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11620" sboTerm="SBO:0000185" id="R_MAR11620" name="Transport of 1-Docosahexenoylglyceroethanolamine (Delta 4, 7, 10, 13, 16, 19), Lpe (22:6)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -462408,7 +461396,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11620">
+            <rdf:Description rdf:about="#R_MAR11620">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.6.3.1"/>
@@ -462420,15 +461408,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03846c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03846c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03846e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03846e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -462437,7 +461425,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR11621" sboTerm="SBO:0000185" id="MAR11621" name="Transport of 2-Linoleoylglycerophosphoethanolamine" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11621" sboTerm="SBO:0000185" id="R_MAR11621" name="Transport of 2-Linoleoylglycerophosphoethanolamine" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -462446,7 +461434,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11621">
+            <rdf:Description rdf:about="#R_MAR11621">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.6.3.1"/>
@@ -462458,15 +461446,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03847c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03847c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03847e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03847e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -462475,7 +461463,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR11622" sboTerm="SBO:0000185" id="MAR11622" name="Transport of 1-Arachidonoyl-Sn-Glycero-3-Phosphoethanolamine" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11622" sboTerm="SBO:0000185" id="R_MAR11622" name="Transport of 1-Arachidonoyl-Sn-Glycero-3-Phosphoethanolamine" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -462484,7 +461472,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11622">
+            <rdf:Description rdf:about="#R_MAR11622">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.6.3.1"/>
@@ -462496,15 +461484,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03848c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03848c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03848e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03848e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -462513,7 +461501,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR11623" sboTerm="SBO:0000185" id="MAR11623" name="Transport of 1-Dihomo-Linolenoylglycerophosphoethanolamine (20:3, Delta 8, 11, 14)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11623" sboTerm="SBO:0000185" id="R_MAR11623" name="Transport of 1-Dihomo-Linolenoylglycerophosphoethanolamine (20:3, Delta 8, 11, 14)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -462522,7 +461510,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11623">
+            <rdf:Description rdf:about="#R_MAR11623">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.6.3.1"/>
@@ -462534,15 +461522,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03855c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03855c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03855e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03855e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -462551,7 +461539,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR11624" sboTerm="SBO:0000185" id="MAR11624" name="Transport of 1-Linoleoylglycerophosphoethanolamine (Delta 9, 12)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11624" sboTerm="SBO:0000185" id="R_MAR11624" name="Transport of 1-Linoleoylglycerophosphoethanolamine (Delta 9, 12)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -462560,7 +461548,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11624">
+            <rdf:Description rdf:about="#R_MAR11624">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.6.3.1"/>
@@ -462572,15 +461560,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03856c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03856c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03856e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03856e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -462589,7 +461577,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR11625" sboTerm="SBO:0000185" id="MAR11625" name="Transport of 1-Palmitoylglycerophosphoethanolamine" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11625" sboTerm="SBO:0000185" id="R_MAR11625" name="Transport of 1-Palmitoylglycerophosphoethanolamine" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -462598,7 +461586,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11625">
+            <rdf:Description rdf:about="#R_MAR11625">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.6.3.1"/>
@@ -462610,15 +461598,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03860c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03860c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03860e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03860e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -462627,7 +461615,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR11626" sboTerm="SBO:0000185" id="MAR11626" name="Transport of 1-Oleoylglycerophosphoethanolamine (Delta 9)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11626" sboTerm="SBO:0000185" id="R_MAR11626" name="Transport of 1-Oleoylglycerophosphoethanolamine (Delta 9)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -462636,7 +461624,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11626">
+            <rdf:Description rdf:about="#R_MAR11626">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.6.3.1"/>
@@ -462648,15 +461636,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03859c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03859c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03859e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03859e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -462665,7 +461653,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR11627" sboTerm="SBO:0000185" id="MAR11627" name="Transport of 1-Palmitoylglycerophosphocholine" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11627" sboTerm="SBO:0000185" id="R_MAR11627" name="Transport of 1-Palmitoylglycerophosphocholine" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -462674,7 +461662,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11627">
+            <rdf:Description rdf:about="#R_MAR11627">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.6.3.44"/>
@@ -462687,15 +461675,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03833c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03833c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03833e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03833e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -462705,7 +461693,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR11628" sboTerm="SBO:0000185" id="MAR11628" name="Transport of 1-Stearoylglycerophosphoethanolamine" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11628" sboTerm="SBO:0000185" id="R_MAR11628" name="Transport of 1-Stearoylglycerophosphoethanolamine" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -462714,7 +461702,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11628">
+            <rdf:Description rdf:about="#R_MAR11628">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.6.3.1"/>
@@ -462726,15 +461714,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03861c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03861c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03861e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03861e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -462743,7 +461731,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR11629" sboTerm="SBO:0000185" id="MAR11629" name="Transport of Sphingomyeline" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11629" sboTerm="SBO:0000185" id="R_MAR11629" name="Transport of Sphingomyeline" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -462751,7 +461739,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11629">
+            <rdf:Description rdf:about="#R_MAR11629">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/SPHMYLN_HsSECt"/>
@@ -462762,13 +461750,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02908c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02908c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02908e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02908e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11630" sboTerm="SBO:0000185" id="MAR11630" name="Transport of Sphingomyelin (D18:0/24:1)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11630" sboTerm="SBO:0000185" id="R_MAR11630" name="Transport of Sphingomyelin (D18:0/24:1)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -462776,7 +461764,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11630">
+            <rdf:Description rdf:about="#R_MAR11630">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/SPHMYLN180241_hs_SECt"/>
@@ -462787,13 +461775,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03936c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03936c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03936e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03936e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11631" sboTerm="SBO:0000185" id="MAR11631" name="Transport of Sphingomyelin (D18:1/14:0)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11631" sboTerm="SBO:0000185" id="R_MAR11631" name="Transport of Sphingomyelin (D18:1/14:0)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -462801,7 +461789,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11631">
+            <rdf:Description rdf:about="#R_MAR11631">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/SPHMYLN18114_hs_SECt"/>
@@ -462812,13 +461800,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03937c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03937c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03937e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03937e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11632" sboTerm="SBO:0000185" id="MAR11632" name="Transport of Sphingomyelin (D18:1/15:0)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11632" sboTerm="SBO:0000185" id="R_MAR11632" name="Transport of Sphingomyelin (D18:1/15:0)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -462826,7 +461814,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11632">
+            <rdf:Description rdf:about="#R_MAR11632">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/SPHMYLN18115_hs_SECt"/>
@@ -462837,13 +461825,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03938c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03938c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03938e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03938e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11633" sboTerm="SBO:0000185" id="MAR11633" name="Transport of Sphingomyelin (D18:1/16:0)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11633" sboTerm="SBO:0000185" id="R_MAR11633" name="Transport of Sphingomyelin (D18:1/16:0)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -462851,7 +461839,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11633">
+            <rdf:Description rdf:about="#R_MAR11633">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/SPHMYLN18116_hs_SECt"/>
@@ -462862,13 +461850,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03940c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03940c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03940e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03940e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11634" sboTerm="SBO:0000185" id="MAR11634" name="Transport of Sphingomyelin (D18:1/16:1)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11634" sboTerm="SBO:0000185" id="R_MAR11634" name="Transport of Sphingomyelin (D18:1/16:1)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -462876,7 +461864,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11634">
+            <rdf:Description rdf:about="#R_MAR11634">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/SPHMYLN181161_hs_SECt"/>
@@ -462887,13 +461875,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03939c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03939c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03939e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03939e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11635" sboTerm="SBO:0000185" id="MAR11635" name="Transport of Sphingomyelin (D18:1/17:0)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11635" sboTerm="SBO:0000185" id="R_MAR11635" name="Transport of Sphingomyelin (D18:1/17:0)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -462901,7 +461889,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11635">
+            <rdf:Description rdf:about="#R_MAR11635">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.13"/>
@@ -462913,13 +461901,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03941c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03941c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03941e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03941e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11636" sboTerm="SBO:0000185" id="MAR11636" name="Transport of Sphingomyelin (D18:1/18:0)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11636" sboTerm="SBO:0000185" id="R_MAR11636" name="Transport of Sphingomyelin (D18:1/18:0)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -462927,7 +461915,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11636">
+            <rdf:Description rdf:about="#R_MAR11636">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/SPHMYLN18118_hs_SECt"/>
@@ -462938,13 +461926,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03943c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03943c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03943e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03943e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11637" sboTerm="SBO:0000185" id="MAR11637" name="Transport of Sphingomyelin (D18:1/18:1)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11637" sboTerm="SBO:0000185" id="R_MAR11637" name="Transport of Sphingomyelin (D18:1/18:1)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -462952,7 +461940,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11637">
+            <rdf:Description rdf:about="#R_MAR11637">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/SPHMYLN181181_hs_SECt"/>
@@ -462963,13 +461951,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03942c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03942c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03942e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03942e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11638" sboTerm="SBO:0000185" id="MAR11638" name="Transport of Sphingomyelin (D18:1/20:0)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11638" sboTerm="SBO:0000185" id="R_MAR11638" name="Transport of Sphingomyelin (D18:1/20:0)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -462977,7 +461965,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11638">
+            <rdf:Description rdf:about="#R_MAR11638">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/SPHMYLN18120_hs_SECt"/>
@@ -462988,13 +461976,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03945c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03945c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03945e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03945e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11639" sboTerm="SBO:0000185" id="MAR11639" name="Transport of Sphingomyelin (D18:1/20:1)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11639" sboTerm="SBO:0000185" id="R_MAR11639" name="Transport of Sphingomyelin (D18:1/20:1)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -463002,7 +461990,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11639">
+            <rdf:Description rdf:about="#R_MAR11639">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/SPHMYLN181201_hs_SECt"/>
@@ -463013,13 +462001,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03944c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03944c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03944e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03944e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11640" sboTerm="SBO:0000185" id="MAR11640" name="Transport of Sphingomyelin (D18:1/21:0)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11640" sboTerm="SBO:0000185" id="R_MAR11640" name="Transport of Sphingomyelin (D18:1/21:0)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -463027,7 +462015,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11640">
+            <rdf:Description rdf:about="#R_MAR11640">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/SPHMYLN18121_hs_SECt"/>
@@ -463038,13 +462026,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03946c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03946c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03946e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03946e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11641" sboTerm="SBO:0000185" id="MAR11641" name="Transport of Sphingomyelin (D18:1/22:0)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11641" sboTerm="SBO:0000185" id="R_MAR11641" name="Transport of Sphingomyelin (D18:1/22:0)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -463052,7 +462040,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11641">
+            <rdf:Description rdf:about="#R_MAR11641">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/SPHMYLN18122_hs_SECt"/>
@@ -463063,13 +462051,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03948c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03948c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03948e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03948e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11642" sboTerm="SBO:0000185" id="MAR11642" name="Transport of Sphingomyelin (D18:1/22:1)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11642" sboTerm="SBO:0000185" id="R_MAR11642" name="Transport of Sphingomyelin (D18:1/22:1)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -463077,7 +462065,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11642">
+            <rdf:Description rdf:about="#R_MAR11642">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.13"/>
@@ -463089,13 +462077,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03947c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03947c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03947e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03947e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11643" sboTerm="SBO:0000185" id="MAR11643" name="Transport of Sphingomyelin (D18:1/23:0)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11643" sboTerm="SBO:0000185" id="R_MAR11643" name="Transport of Sphingomyelin (D18:1/23:0)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -463103,7 +462091,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11643">
+            <rdf:Description rdf:about="#R_MAR11643">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/SPHMYLN18123_hs_SECt"/>
@@ -463114,13 +462102,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03949c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03949c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03949e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03949e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11644" sboTerm="SBO:0000185" id="MAR11644" name="Transport of Sphingomyelin (D18:0/24:0)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11644" sboTerm="SBO:0000185" id="R_MAR11644" name="Transport of Sphingomyelin (D18:0/24:0)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -463128,7 +462116,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11644">
+            <rdf:Description rdf:about="#R_MAR11644">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/SPHMYLN1824_hs_SECt"/>
@@ -463139,13 +462127,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03950c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03950c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03950e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03950e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11645" sboTerm="SBO:0000185" id="MAR11645" name="Transport of Sphingomyelin (D18:0/25:0)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11645" sboTerm="SBO:0000185" id="R_MAR11645" name="Transport of Sphingomyelin (D18:0/25:0)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -463153,7 +462141,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11645">
+            <rdf:Description rdf:about="#R_MAR11645">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/SPHMYLN1825_hs_SECt"/>
@@ -463164,13 +462152,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03951c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03951c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03951e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03951e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11646" sboTerm="SBO:0000185" id="MAR11646" name="3-Amino-Isobutyrate Transport, Proton Symport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11646" sboTerm="SBO:0000185" id="R_MAR11646" name="3-Amino-Isobutyrate Transport, Proton Symport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -463179,7 +462167,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11646">
+            <rdf:Description rdf:about="#R_MAR11646">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/3AIBt1"/>
@@ -463190,15 +462178,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02325e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02325e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02325c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02325c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11647" sboTerm="SBO:0000185" id="MAR11647" name="Hydroxyprogesterone Transport, Antiport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11647" sboTerm="SBO:0000185" id="R_MAR11647" name="Hydroxyprogesterone Transport, Antiport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -463207,7 +462195,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11647">
+            <rdf:Description rdf:about="#R_MAR11647">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/APRGSTRNt1e"/>
@@ -463218,12 +462206,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00580e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02147c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00580e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02147c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00580c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02147e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00580c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02147e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -463232,7 +462220,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR11648" sboTerm="SBO:0000185" id="MAR11648" name="Extracellular Transport of Digalactosylceramidesulfate, Active Transport" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11648" sboTerm="SBO:0000185" id="R_MAR11648" name="Extracellular Transport of Digalactosylceramidesulfate, Active Transport" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -463240,7 +462228,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11648">
+            <rdf:Description rdf:about="#R_MAR11648">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.6.3.44"/>
@@ -463252,15 +462240,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01695c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01695c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01695e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01695e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -463269,7 +462257,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR11649" sboTerm="SBO:0000185" id="MAR11649" name="Transport of 1-Phosphatidyl-1D-Myo-Inositol, Vescicular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11649" sboTerm="SBO:0000185" id="R_MAR11649" name="Transport of 1-Phosphatidyl-1D-Myo-Inositol, Vescicular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -463278,7 +462266,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11649">
+            <rdf:Description rdf:about="#R_MAR11649">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.6.3.44"/>
@@ -463290,13 +462278,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02750e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02750e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02750c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02750c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11650" sboTerm="SBO:0000185" id="MAR11650" name="Transport of 1-Arachidonoylglycerophosphoinositol, Vescicular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11650" sboTerm="SBO:0000185" id="R_MAR11650" name="Transport of 1-Arachidonoylglycerophosphoinositol, Vescicular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -463305,7 +462293,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11650">
+            <rdf:Description rdf:about="#R_MAR11650">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/PAILR_HSt1e"/>
@@ -463315,13 +462303,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03802e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03802e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03802c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03802c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11651" sboTerm="SBO:0000185" id="MAR11651" name="Transport of 1-Palmitoylglycerophosphoinositol, Vescicular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11651" sboTerm="SBO:0000185" id="R_MAR11651" name="Transport of 1-Palmitoylglycerophosphoinositol, Vescicular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -463330,7 +462318,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11651">
+            <rdf:Description rdf:about="#R_MAR11651">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/PAILPALM_HSt1e"/>
@@ -463340,13 +462328,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03803e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03803e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03803c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03803c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11652" sboTerm="SBO:0000185" id="MAR11652" name="Transport of 1-Stearoylglycerophosphoinositol, Vescicular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11652" sboTerm="SBO:0000185" id="R_MAR11652" name="Transport of 1-Stearoylglycerophosphoinositol, Vescicular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -463355,7 +462343,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11652">
+            <rdf:Description rdf:about="#R_MAR11652">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/PAILSTE_HSt1e"/>
@@ -463365,13 +462353,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03804e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03804e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03804c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03804c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11653" sboTerm="SBO:0000185" id="MAR11653" name="Transport of 2-Linoleoylglycerophosphocholine, Vescicular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11653" sboTerm="SBO:0000185" id="R_MAR11653" name="Transport of 2-Linoleoylglycerophosphocholine, Vescicular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -463380,7 +462368,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11653">
+            <rdf:Description rdf:about="#R_MAR11653">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PCHOL2LINL_HSt1e"/>
@@ -463391,13 +462379,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03805e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03805e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03805c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03805c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11654" sboTerm="SBO:0000185" id="MAR11654" name="Transport of 2-Oleoylglycerophosphocholine, Vescicular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11654" sboTerm="SBO:0000185" id="R_MAR11654" name="Transport of 2-Oleoylglycerophosphocholine, Vescicular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -463406,7 +462394,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11654">
+            <rdf:Description rdf:about="#R_MAR11654">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PCHOL2OLE_HSt1e"/>
@@ -463417,13 +462405,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03806e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03806e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03806c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03806c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11655" sboTerm="SBO:0000185" id="MAR11655" name="Transport of 2-Stearoylglycerophosphocholine, Vescicular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11655" sboTerm="SBO:0000185" id="R_MAR11655" name="Transport of 2-Stearoylglycerophosphocholine, Vescicular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -463432,7 +462420,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11655">
+            <rdf:Description rdf:about="#R_MAR11655">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PCHOL2STE_HSt1e"/>
@@ -463443,13 +462431,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03808e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03808e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03808c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03808c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11656" sboTerm="SBO:0000185" id="MAR11656" name="Transport of 1-Arachidonoyl-Glycero-3-Phosphocholine, Vescicular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11656" sboTerm="SBO:0000185" id="R_MAR11656" name="Transport of 1-Arachidonoyl-Glycero-3-Phosphocholine, Vescicular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -463458,7 +462446,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11656">
+            <rdf:Description rdf:about="#R_MAR11656">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PCHOLAR_HSt1e"/>
@@ -463469,13 +462457,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03809e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03809e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03809c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03809c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11657" sboTerm="SBO:0000185" id="MAR11657" name="Transport of 1-Docosahexaenoylglycerophosphocholine, Vescicular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11657" sboTerm="SBO:0000185" id="R_MAR11657" name="Transport of 1-Docosahexaenoylglycerophosphocholine, Vescicular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -463484,7 +462472,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11657">
+            <rdf:Description rdf:about="#R_MAR11657">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PCHOLDOC_HSt1e"/>
@@ -463495,13 +462483,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03810e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03810e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03810c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03810c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11658" sboTerm="SBO:0000185" id="MAR11658" name="Transport of 1-Eicosadienoylglycerophosphocholine (Delta 11, 14), Vescicular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11658" sboTerm="SBO:0000185" id="R_MAR11658" name="Transport of 1-Eicosadienoylglycerophosphocholine (Delta 11, 14), Vescicular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -463510,7 +462498,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11658">
+            <rdf:Description rdf:about="#R_MAR11658">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PCHOLEIC_HSt1e"/>
@@ -463521,13 +462509,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03811e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03811e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03811c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03811c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11659" sboTerm="SBO:0000185" id="MAR11659" name="Transport of 1-Eicosatrienoylglycerophosphocholine (Delta 11, 14, 17), Vescicular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11659" sboTerm="SBO:0000185" id="R_MAR11659" name="Transport of 1-Eicosatrienoylglycerophosphocholine (Delta 11, 14, 17), Vescicular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -463536,7 +462524,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11659">
+            <rdf:Description rdf:about="#R_MAR11659">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PCHOLET_HSt1e"/>
@@ -463547,13 +462535,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03812e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03812e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03812c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03812c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11660" sboTerm="SBO:0000185" id="MAR11660" name="Transport of 1-Heptadecanoylglycerophosphocholine, Vescicular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11660" sboTerm="SBO:0000185" id="R_MAR11660" name="Transport of 1-Heptadecanoylglycerophosphocholine, Vescicular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -463562,7 +462550,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11660">
+            <rdf:Description rdf:about="#R_MAR11660">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PCHOLHEP_HSt1e"/>
@@ -463573,13 +462561,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03813e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03813e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03813c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03813c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11661" sboTerm="SBO:0000185" id="MAR11661" name="Transport of 1-Linoleoylglycerophosphocholine (Delta 9, 12), Vescicular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11661" sboTerm="SBO:0000185" id="R_MAR11661" name="Transport of 1-Linoleoylglycerophosphocholine (Delta 9, 12), Vescicular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -463588,7 +462576,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11661">
+            <rdf:Description rdf:about="#R_MAR11661">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.6.3.44"/>
@@ -463601,13 +462589,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03814e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03814e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03814c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03814c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11662" sboTerm="SBO:0000185" id="MAR11662" name="Transport of 1-Myristoylglycerophosphocholine, Vescicular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11662" sboTerm="SBO:0000185" id="R_MAR11662" name="Transport of 1-Myristoylglycerophosphocholine, Vescicular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -463616,7 +462604,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11662">
+            <rdf:Description rdf:about="#R_MAR11662">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PCHOLMYR_Hst1e"/>
@@ -463627,13 +462615,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03815e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03815e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03815c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03815c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11663" sboTerm="SBO:0000185" id="MAR11663" name="Transport of 1-Pentadecanoylglycerophosphocholine, Sn1-Lpc (15:0), Vescicular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11663" sboTerm="SBO:0000185" id="R_MAR11663" name="Transport of 1-Pentadecanoylglycerophosphocholine, Sn1-Lpc (15:0), Vescicular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -463642,7 +462630,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11663">
+            <rdf:Description rdf:about="#R_MAR11663">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PCHOLN15_HSt1e"/>
@@ -463653,13 +462641,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03816e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03816e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03816c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03816c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11664" sboTerm="SBO:0000185" id="MAR11664" name="Transport of 1-Octadeca-Trienoylglycerophosphocholine, Sn1-Lpc (18:3, Delta 9, 12, 15), Vescicular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11664" sboTerm="SBO:0000185" id="R_MAR11664" name="Transport of 1-Octadeca-Trienoylglycerophosphocholine, Sn1-Lpc (18:3, Delta 9, 12, 15), Vescicular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -463668,7 +462656,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11664">
+            <rdf:Description rdf:about="#R_MAR11664">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PCHOLN183_HSt1e"/>
@@ -463679,13 +462667,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03818e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03818e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03818c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03818c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11665" sboTerm="SBO:0000185" id="MAR11665" name="Transport of 1-Octadeca-Trienoylglycerophosphocholine, Sn1-Lpc (18:3, Delta 6, 9, 12), Vescicular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11665" sboTerm="SBO:0000185" id="R_MAR11665" name="Transport of 1-Octadeca-Trienoylglycerophosphocholine, Sn1-Lpc (18:3, Delta 6, 9, 12), Vescicular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -463694,7 +462682,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11665">
+            <rdf:Description rdf:about="#R_MAR11665">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PCHOLN1836_HSt1e"/>
@@ -463705,13 +462693,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03817e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03817e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03817c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03817c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11666" sboTerm="SBO:0000185" id="MAR11666" name="Transport of 1-NoNADecanoylglycerophosphocholine, Sn1-Lpc (19:0), Vescicular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11666" sboTerm="SBO:0000185" id="R_MAR11666" name="Transport of 1-NoNADecanoylglycerophosphocholine, Sn1-Lpc (19:0), Vescicular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -463720,7 +462708,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11666">
+            <rdf:Description rdf:about="#R_MAR11666">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.6.3.44"/>
@@ -463733,13 +462721,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03819e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03819e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03819c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03819c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11667" sboTerm="SBO:0000185" id="MAR11667" name="Transport of 1-Eicosenoylglycerophosphocholine (Delta 11) , Sn1-Lpc (20:1), Vescicular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11667" sboTerm="SBO:0000185" id="R_MAR11667" name="Transport of 1-Eicosenoylglycerophosphocholine (Delta 11) , Sn1-Lpc (20:1), Vescicular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -463748,7 +462736,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11667">
+            <rdf:Description rdf:about="#R_MAR11667">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.6.3.44"/>
@@ -463761,13 +462749,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03820e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03820e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03820c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03820c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11668" sboTerm="SBO:0000185" id="MAR11668" name="Transport of 1-Dihomo-Linolenoylglycerophosphocholine (20:3, Delta 8, 11, 14), Lysopc A C20:3, Vescicular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11668" sboTerm="SBO:0000185" id="R_MAR11668" name="Transport of 1-Dihomo-Linolenoylglycerophosphocholine (20:3, Delta 8, 11, 14), Lysopc A C20:3, Vescicular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -463776,7 +462764,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11668">
+            <rdf:Description rdf:about="#R_MAR11668">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.6.3.44"/>
@@ -463789,13 +462777,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03821e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03821e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03821c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03821c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11669" sboTerm="SBO:0000185" id="MAR11669" name="Transport of 1-Eicosatetraenoylglycerophosphocholine (Delta 8, 11, 14, 17), Sn1-Lpc (20:4), Vescicular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11669" sboTerm="SBO:0000185" id="R_MAR11669" name="Transport of 1-Eicosatetraenoylglycerophosphocholine (Delta 8, 11, 14, 17), Sn1-Lpc (20:4), Vescicular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -463804,7 +462792,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11669">
+            <rdf:Description rdf:about="#R_MAR11669">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.6.3.44"/>
@@ -463817,13 +462805,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03822e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03822e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03822c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03822c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11670" sboTerm="SBO:0000185" id="MAR11670" name="Transport of 1-Eicosapentenoylglycerophosphocholine (Delta 5, 8, 11, 14, 17), Sn1-Lpc (20:5), Vescicular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11670" sboTerm="SBO:0000185" id="R_MAR11670" name="Transport of 1-Eicosapentenoylglycerophosphocholine (Delta 5, 8, 11, 14, 17), Sn1-Lpc (20:5), Vescicular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -463832,7 +462820,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11670">
+            <rdf:Description rdf:about="#R_MAR11670">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.6.3.44"/>
@@ -463845,13 +462833,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03823e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03823e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03823c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03823c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11671" sboTerm="SBO:0000185" id="MAR11671" name="Transport of 1-Docosatetraenoylglycerophosphocholine (Delta 7, 10, 13, 16), Sn1-Lpc (22:4), Vescicular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11671" sboTerm="SBO:0000185" id="R_MAR11671" name="Transport of 1-Docosatetraenoylglycerophosphocholine (Delta 7, 10, 13, 16), Sn1-Lpc (22:4), Vescicular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -463860,7 +462848,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11671">
+            <rdf:Description rdf:about="#R_MAR11671">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.6.3.44"/>
@@ -463873,13 +462861,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03824e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03824e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03824c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03824c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11672" sboTerm="SBO:0000185" id="MAR11672" name="Transport of 1-Docosapentenoylglycerophosphocholine (Delta 7, 10, 13, 16, 19), Sn1-Lpc (22:5)-W3, Vescicular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11672" sboTerm="SBO:0000185" id="R_MAR11672" name="Transport of 1-Docosapentenoylglycerophosphocholine (Delta 7, 10, 13, 16, 19), Sn1-Lpc (22:5)-W3, Vescicular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -463888,7 +462876,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11672">
+            <rdf:Description rdf:about="#R_MAR11672">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.6.3.44"/>
@@ -463901,13 +462889,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03826e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03826e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03826c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03826c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11673" sboTerm="SBO:0000185" id="MAR11673" name="Transport of 1-Docosapentenoylglycerophosphocholine (Delta 4, 7, 10, 13, 16), Sn1-Lpc (22:5)-W6, Vescicular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11673" sboTerm="SBO:0000185" id="R_MAR11673" name="Transport of 1-Docosapentenoylglycerophosphocholine (Delta 4, 7, 10, 13, 16), Sn1-Lpc (22:5)-W6, Vescicular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -463916,7 +462904,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11673">
+            <rdf:Description rdf:about="#R_MAR11673">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.6.3.44"/>
@@ -463929,13 +462917,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03825e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03825e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03825c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03825c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11674" sboTerm="SBO:0000185" id="MAR11674" name="Transport of 1-Docosahexenoylglycerophosphocholine (Delta 4, 7, 10, 13, 16, 19), Sn1-Lpc (22:6), Vescicular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11674" sboTerm="SBO:0000185" id="R_MAR11674" name="Transport of 1-Docosahexenoylglycerophosphocholine (Delta 4, 7, 10, 13, 16, 19), Sn1-Lpc (22:6), Vescicular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -463944,7 +462932,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11674">
+            <rdf:Description rdf:about="#R_MAR11674">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.6.3.44"/>
@@ -463957,13 +462945,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03827e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03827e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03827c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03827c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11675" sboTerm="SBO:0000185" id="MAR11675" name="Transport of 1-Lignocericylglycerophosphocholine (24:0), Lysopc A C24, Vescicular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11675" sboTerm="SBO:0000185" id="R_MAR11675" name="Transport of 1-Lignocericylglycerophosphocholine (24:0), Lysopc A C24, Vescicular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -463972,7 +462960,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11675">
+            <rdf:Description rdf:about="#R_MAR11675">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.6.3.44"/>
@@ -463985,13 +462973,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03828e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03828e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03828c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03828c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11676" sboTerm="SBO:0000185" id="MAR11676" name="Transport of 1-Oleoylglycerophosphocholine (Delta 9), Vescicular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11676" sboTerm="SBO:0000185" id="R_MAR11676" name="Transport of 1-Oleoylglycerophosphocholine (Delta 9), Vescicular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -464000,7 +462988,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11676">
+            <rdf:Description rdf:about="#R_MAR11676">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.6.3.44"/>
@@ -464013,13 +463001,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03832e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03832e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03832c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03832c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11677" sboTerm="SBO:0000185" id="MAR11677" name="Transport of 1-Palmitoylglycerophosphocholine, Vescicular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11677" sboTerm="SBO:0000185" id="R_MAR11677" name="Transport of 1-Palmitoylglycerophosphocholine, Vescicular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -464028,7 +463016,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11677">
+            <rdf:Description rdf:about="#R_MAR11677">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.6.3.44"/>
@@ -464041,13 +463029,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03833e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03833e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03833c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03833c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11678" sboTerm="SBO:0000185" id="MAR11678" name="Transport of 1-Palmitoleoylglycerophosphocholine (Delta 9), Vescicular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11678" sboTerm="SBO:0000185" id="R_MAR11678" name="Transport of 1-Palmitoleoylglycerophosphocholine (Delta 9), Vescicular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -464056,7 +463044,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11678">
+            <rdf:Description rdf:about="#R_MAR11678">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.6.3.44"/>
@@ -464069,13 +463057,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03834e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03834e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03834c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03834c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11679" sboTerm="SBO:0000185" id="MAR11679" name="Transport of 1-Stearoylglycerophosphocholine, Vescicular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11679" sboTerm="SBO:0000185" id="R_MAR11679" name="Transport of 1-Stearoylglycerophosphocholine, Vescicular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -464084,7 +463072,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11679">
+            <rdf:Description rdf:about="#R_MAR11679">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.6.3.44"/>
@@ -464097,13 +463085,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03835e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03835e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03835c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03835c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11680" sboTerm="SBO:0000185" id="MAR11680" name="Transport of 1-Didecanoylglycerophosphoethanolamine (C12:0 Pe), Vescicular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11680" sboTerm="SBO:0000185" id="R_MAR11680" name="Transport of 1-Didecanoylglycerophosphoethanolamine (C12:0 Pe), Vescicular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -464112,7 +463100,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11680">
+            <rdf:Description rdf:about="#R_MAR11680">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.6.3.44"/>
@@ -464125,13 +463113,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03838e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03838e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03838c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03838c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11681" sboTerm="SBO:0000185" id="MAR11681" name="Transport of 1-Tridecanoylglycerophosphoethanolamine (C13:0 Pe), Vescicular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11681" sboTerm="SBO:0000185" id="R_MAR11681" name="Transport of 1-Tridecanoylglycerophosphoethanolamine (C13:0 Pe), Vescicular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -464140,7 +463128,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11681">
+            <rdf:Description rdf:about="#R_MAR11681">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.6.3.44"/>
@@ -464153,13 +463141,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03839e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03839e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03839c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03839c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11682" sboTerm="SBO:0000185" id="MAR11682" name="Transport of 1-Myristoylglycerophosphoethanolamine (C14:0 Pe), Vescicular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11682" sboTerm="SBO:0000185" id="R_MAR11682" name="Transport of 1-Myristoylglycerophosphoethanolamine (C14:0 Pe), Vescicular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -464168,7 +463156,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11682">
+            <rdf:Description rdf:about="#R_MAR11682">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.6.3.44"/>
@@ -464181,13 +463169,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03840e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03840e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03840c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03840c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11683" sboTerm="SBO:0000185" id="MAR11683" name="Transport of 1-Pentadecanoylglycerophosphoethanolamine (C15:0 Pe), Vescicular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11683" sboTerm="SBO:0000185" id="R_MAR11683" name="Transport of 1-Pentadecanoylglycerophosphoethanolamine (C15:0 Pe), Vescicular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -464196,7 +463184,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11683">
+            <rdf:Description rdf:about="#R_MAR11683">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.6.3.44"/>
@@ -464209,13 +463197,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03841e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03841e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03841c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03841c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11684" sboTerm="SBO:0000185" id="MAR11684" name="Transport of 1-Hexadecenoylglycerophosphoethanolamine (C16:1 Pe, Delta 9), Vescicular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11684" sboTerm="SBO:0000185" id="R_MAR11684" name="Transport of 1-Hexadecenoylglycerophosphoethanolamine (C16:1 Pe, Delta 9), Vescicular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -464224,7 +463212,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11684">
+            <rdf:Description rdf:about="#R_MAR11684">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.6.3.44"/>
@@ -464237,13 +463225,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03842e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03842e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03842c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03842c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11685" sboTerm="SBO:0000185" id="MAR11685" name="Transport of 1-Heptadecanoylglycerophosphoethanolamine (C17:0 Pe), Vescicular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11685" sboTerm="SBO:0000185" id="R_MAR11685" name="Transport of 1-Heptadecanoylglycerophosphoethanolamine (C17:0 Pe), Vescicular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -464252,7 +463240,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11685">
+            <rdf:Description rdf:about="#R_MAR11685">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.6.3.44"/>
@@ -464265,13 +463253,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03843e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03843e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03843c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03843c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11686" sboTerm="SBO:0000185" id="MAR11686" name="1-Eicosatrienoylglycerophosphoethanolamine (Delta 11, 14, 17), Lpe (20:3), Vescicular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11686" sboTerm="SBO:0000185" id="R_MAR11686" name="1-Eicosatrienoylglycerophosphoethanolamine (Delta 11, 14, 17), Lpe (20:3), Vescicular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -464280,7 +463268,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11686">
+            <rdf:Description rdf:about="#R_MAR11686">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.6.3.44"/>
@@ -464293,13 +463281,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03844e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03844e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03844c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03844c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11687" sboTerm="SBO:0000185" id="MAR11687" name="Transport of 1-Docosahexenoylglyceroethanolamine (Delta 4, 7, 10, 13, 16, 19), Lpe (22:6), Vescicular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11687" sboTerm="SBO:0000185" id="R_MAR11687" name="Transport of 1-Docosahexenoylglyceroethanolamine (Delta 4, 7, 10, 13, 16, 19), Lpe (22:6), Vescicular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -464308,7 +463296,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11687">
+            <rdf:Description rdf:about="#R_MAR11687">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.6.3.44"/>
@@ -464321,13 +463309,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03846e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03846e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03846c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03846c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11688" sboTerm="SBO:0000185" id="MAR11688" name="Transport of 2-Linoleoylglycerophosphoethanolamine, Vescicular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11688" sboTerm="SBO:0000185" id="R_MAR11688" name="Transport of 2-Linoleoylglycerophosphoethanolamine, Vescicular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -464336,7 +463324,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11688">
+            <rdf:Description rdf:about="#R_MAR11688">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.6.3.44"/>
@@ -464349,13 +463337,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03847e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03847e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03847c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03847c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11689" sboTerm="SBO:0000185" id="MAR11689" name="Transport of 1-Arachidonoyl-Sn-Glycero-3-Phosphoethanolamine, Vescicular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11689" sboTerm="SBO:0000185" id="R_MAR11689" name="Transport of 1-Arachidonoyl-Sn-Glycero-3-Phosphoethanolamine, Vescicular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -464364,7 +463352,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11689">
+            <rdf:Description rdf:about="#R_MAR11689">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.6.3.44"/>
@@ -464377,13 +463365,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03848e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03848e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03848c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03848c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11690" sboTerm="SBO:0000185" id="MAR11690" name="Transport of 1-Dihomo-Linolenoylglycerophosphoethanolamine (20:3, Delta 8, 11, 14), Vescicular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11690" sboTerm="SBO:0000185" id="R_MAR11690" name="Transport of 1-Dihomo-Linolenoylglycerophosphoethanolamine (20:3, Delta 8, 11, 14), Vescicular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -464392,7 +463380,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11690">
+            <rdf:Description rdf:about="#R_MAR11690">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.6.3.44"/>
@@ -464405,13 +463393,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03855e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03855e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03855c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03855c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11691" sboTerm="SBO:0000185" id="MAR11691" name="Transport of 1-Linoleoylglycerophosphoethanolamine (Delta 9, 12), Vescicular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11691" sboTerm="SBO:0000185" id="R_MAR11691" name="Transport of 1-Linoleoylglycerophosphoethanolamine (Delta 9, 12), Vescicular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -464420,7 +463408,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11691">
+            <rdf:Description rdf:about="#R_MAR11691">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.6.3.44"/>
@@ -464433,13 +463421,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03856e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03856e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03856c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03856c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11692" sboTerm="SBO:0000185" id="MAR11692" name="Transport of 1-Oleoylglycerophosphoethanolamine (Delta 9), Vescicular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11692" sboTerm="SBO:0000185" id="R_MAR11692" name="Transport of 1-Oleoylglycerophosphoethanolamine (Delta 9), Vescicular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -464448,7 +463436,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11692">
+            <rdf:Description rdf:about="#R_MAR11692">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.6.3.1"/>
@@ -464460,13 +463448,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03859e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03859e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03859c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03859c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11693" sboTerm="SBO:0000185" id="MAR11693" name="Transport of 1-Palmitoylglycerophosphoethanolamine, Vescicular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11693" sboTerm="SBO:0000185" id="R_MAR11693" name="Transport of 1-Palmitoylglycerophosphoethanolamine, Vescicular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -464475,7 +463463,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11693">
+            <rdf:Description rdf:about="#R_MAR11693">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.6.3.1"/>
@@ -464487,13 +463475,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03860e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03860e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03860c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03860c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11694" sboTerm="SBO:0000185" id="MAR11694" name="Transport of 1-Stearoylglycerophosphoethanolamine, Vescicular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11694" sboTerm="SBO:0000185" id="R_MAR11694" name="Transport of 1-Stearoylglycerophosphoethanolamine, Vescicular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -464502,7 +463490,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11694">
+            <rdf:Description rdf:about="#R_MAR11694">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.6.3.1"/>
@@ -464514,13 +463502,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03861e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03861e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03861c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03861c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11695" sboTerm="SBO:0000185" id="MAR11695" name="Extracellular Transport of Sphingomyeline, Active Transport" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11695" sboTerm="SBO:0000185" id="R_MAR11695" name="Extracellular Transport of Sphingomyeline, Active Transport" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -464528,7 +463516,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11695">
+            <rdf:Description rdf:about="#R_MAR11695">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.6.3.44"/>
@@ -464540,15 +463528,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02908c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02908c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02908e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02908e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -464557,7 +463545,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR11696" sboTerm="SBO:0000185" id="MAR11696" name="Transport of Sphingomyelin (D18:0/24:1), Active Transport" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11696" sboTerm="SBO:0000185" id="R_MAR11696" name="Transport of Sphingomyelin (D18:0/24:1), Active Transport" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -464565,7 +463553,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11696">
+            <rdf:Description rdf:about="#R_MAR11696">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.6.3.44"/>
@@ -464577,15 +463565,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03936c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03936c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03936e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03936e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -464594,7 +463582,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR11697" sboTerm="SBO:0000185" id="MAR11697" name="Transport of Sphingomyelin (D18:0/24:1) Vescicular Transport" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11697" sboTerm="SBO:0000185" id="R_MAR11697" name="Transport of Sphingomyelin (D18:0/24:1) Vescicular Transport" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -464603,7 +463591,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11697">
+            <rdf:Description rdf:about="#R_MAR11697">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.6.3.1"/>
@@ -464614,13 +463602,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03936e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03936e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03936c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03936c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11698" sboTerm="SBO:0000185" id="MAR11698" name="Transport of Sphingomyelin (D18:1/14:0), Active Transport" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11698" sboTerm="SBO:0000185" id="R_MAR11698" name="Transport of Sphingomyelin (D18:1/14:0), Active Transport" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -464628,7 +463616,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11698">
+            <rdf:Description rdf:about="#R_MAR11698">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.6.3.44"/>
@@ -464640,15 +463628,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03937c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03937c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03937e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03937e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -464657,7 +463645,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR11699" sboTerm="SBO:0000185" id="MAR11699" name="Transport of Sphingomyelin (D18:1/14:0), Vescicular Transport" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11699" sboTerm="SBO:0000185" id="R_MAR11699" name="Transport of Sphingomyelin (D18:1/14:0), Vescicular Transport" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -464666,7 +463654,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11699">
+            <rdf:Description rdf:about="#R_MAR11699">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.6.3.1"/>
@@ -464677,13 +463665,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03937e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03937e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03937c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03937c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11700" sboTerm="SBO:0000185" id="MAR11700" name="Transport of Sphingomyelin (D18:1/15:0), Active Transport" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11700" sboTerm="SBO:0000185" id="R_MAR11700" name="Transport of Sphingomyelin (D18:1/15:0), Active Transport" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -464691,7 +463679,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11700">
+            <rdf:Description rdf:about="#R_MAR11700">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.6.3.44"/>
@@ -464703,15 +463691,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03938c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03938c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03938e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03938e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -464720,7 +463708,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR11701" sboTerm="SBO:0000185" id="MAR11701" name="Transport of Sphingomyelin (D18:1/15:0), Vescicular Transport" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11701" sboTerm="SBO:0000185" id="R_MAR11701" name="Transport of Sphingomyelin (D18:1/15:0), Vescicular Transport" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -464729,7 +463717,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11701">
+            <rdf:Description rdf:about="#R_MAR11701">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.6.3.1"/>
@@ -464740,13 +463728,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03938e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03938e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03938c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03938c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11702" sboTerm="SBO:0000185" id="MAR11702" name="Transport of Sphingomyelin (D18:1/16:0), Active Transport" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11702" sboTerm="SBO:0000185" id="R_MAR11702" name="Transport of Sphingomyelin (D18:1/16:0), Active Transport" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -464754,7 +463742,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11702">
+            <rdf:Description rdf:about="#R_MAR11702">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.6.3.44"/>
@@ -464766,15 +463754,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03940c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03940c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03940e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03940e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -464783,7 +463771,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR11703" sboTerm="SBO:0000185" id="MAR11703" name="Transport of Sphingomyelin (D18:1/16:0), Vescicular Transport" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11703" sboTerm="SBO:0000185" id="R_MAR11703" name="Transport of Sphingomyelin (D18:1/16:0), Vescicular Transport" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -464792,7 +463780,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11703">
+            <rdf:Description rdf:about="#R_MAR11703">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.6.3.1"/>
@@ -464803,13 +463791,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03940e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03940e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03940c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03940c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11704" sboTerm="SBO:0000185" id="MAR11704" name="Transport of Sphingomyelin (D18:1/16:1), Active Transport" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11704" sboTerm="SBO:0000185" id="R_MAR11704" name="Transport of Sphingomyelin (D18:1/16:1), Active Transport" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -464817,7 +463805,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11704">
+            <rdf:Description rdf:about="#R_MAR11704">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.6.3.44"/>
@@ -464829,15 +463817,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03939c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03939c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03939e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03939e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -464846,7 +463834,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR11705" sboTerm="SBO:0000185" id="MAR11705" name="Transport of Sphingomyelin (D18:1/16:1), Vescicular Transport" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11705" sboTerm="SBO:0000185" id="R_MAR11705" name="Transport of Sphingomyelin (D18:1/16:1), Vescicular Transport" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -464855,7 +463843,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11705">
+            <rdf:Description rdf:about="#R_MAR11705">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.6.3.1"/>
@@ -464866,13 +463854,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03939e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03939e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03939c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03939c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11706" sboTerm="SBO:0000185" id="MAR11706" name="Transport of Sphingomyelin (D18:1/17:0), Active" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11706" sboTerm="SBO:0000185" id="R_MAR11706" name="Transport of Sphingomyelin (D18:1/17:0), Active" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -464880,7 +463868,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11706">
+            <rdf:Description rdf:about="#R_MAR11706">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.6.3.44"/>
@@ -464892,15 +463880,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03941c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03941c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03941e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03941e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -464909,7 +463897,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR11707" sboTerm="SBO:0000185" id="MAR11707" name="Transport of Sphingomyelin (D18:1/17:0), Vescicular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11707" sboTerm="SBO:0000185" id="R_MAR11707" name="Transport of Sphingomyelin (D18:1/17:0), Vescicular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -464918,7 +463906,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11707">
+            <rdf:Description rdf:about="#R_MAR11707">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.6.3.1"/>
@@ -464929,13 +463917,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03941e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03941e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03941c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03941c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11708" sboTerm="SBO:0000185" id="MAR11708" name="Transport of Sphingomyelin (D18:1/18:0), Active" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11708" sboTerm="SBO:0000185" id="R_MAR11708" name="Transport of Sphingomyelin (D18:1/18:0), Active" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -464943,7 +463931,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11708">
+            <rdf:Description rdf:about="#R_MAR11708">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.6.3.44"/>
@@ -464955,15 +463943,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03943c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03943c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03943e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03943e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -464972,7 +463960,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR11709" sboTerm="SBO:0000185" id="MAR11709" name="Transport of Sphingomyelin (D18:1/18:0), Vescicular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11709" sboTerm="SBO:0000185" id="R_MAR11709" name="Transport of Sphingomyelin (D18:1/18:0), Vescicular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -464981,7 +463969,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11709">
+            <rdf:Description rdf:about="#R_MAR11709">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/SPHMYLN18118_hs_t1"/>
@@ -464991,13 +463979,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03943e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03943e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03943c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03943c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11710" sboTerm="SBO:0000185" id="MAR11710" name="Transport of Sphingomyelin (D18:1/18:1), Active" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11710" sboTerm="SBO:0000185" id="R_MAR11710" name="Transport of Sphingomyelin (D18:1/18:1), Active" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -465005,7 +463993,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11710">
+            <rdf:Description rdf:about="#R_MAR11710">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.6.3.44"/>
@@ -465017,15 +464005,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03942c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03942c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03942e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03942e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -465034,7 +464022,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR11711" sboTerm="SBO:0000185" id="MAR11711" name="Transport of Sphingomyelin (D18:1/18:1), Vescicular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11711" sboTerm="SBO:0000185" id="R_MAR11711" name="Transport of Sphingomyelin (D18:1/18:1), Vescicular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -465043,7 +464031,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11711">
+            <rdf:Description rdf:about="#R_MAR11711">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/SPHMYLN181181_hs_t1"/>
@@ -465053,13 +464041,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03942e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03942e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03942c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03942c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11712" sboTerm="SBO:0000185" id="MAR11712" name="Transport of Sphingomyelin (D18:1/20:0), Active" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11712" sboTerm="SBO:0000185" id="R_MAR11712" name="Transport of Sphingomyelin (D18:1/20:0), Active" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -465067,7 +464055,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11712">
+            <rdf:Description rdf:about="#R_MAR11712">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.6.3.44"/>
@@ -465079,15 +464067,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03945c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03945c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03945e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03945e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -465096,7 +464084,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR11713" sboTerm="SBO:0000185" id="MAR11713" name="Transport of Sphingomyelin (D18:1/20:0), Vescicular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11713" sboTerm="SBO:0000185" id="R_MAR11713" name="Transport of Sphingomyelin (D18:1/20:0), Vescicular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -465105,7 +464093,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11713">
+            <rdf:Description rdf:about="#R_MAR11713">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/SPHMYLN18120_hs_t1"/>
@@ -465115,13 +464103,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03945e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03945e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03945c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03945c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11714" sboTerm="SBO:0000185" id="MAR11714" name="Transport of Sphingomyelin (D18:1/20:1), Active" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11714" sboTerm="SBO:0000185" id="R_MAR11714" name="Transport of Sphingomyelin (D18:1/20:1), Active" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -465129,7 +464117,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11714">
+            <rdf:Description rdf:about="#R_MAR11714">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.6.3.44"/>
@@ -465141,15 +464129,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03944c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03944c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03944e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03944e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -465158,7 +464146,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR11715" sboTerm="SBO:0000185" id="MAR11715" name="Transport of Sphingomyelin (D18:1/20:1), Vescicular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11715" sboTerm="SBO:0000185" id="R_MAR11715" name="Transport of Sphingomyelin (D18:1/20:1), Vescicular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -465167,7 +464155,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11715">
+            <rdf:Description rdf:about="#R_MAR11715">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/SPHMYLN181201_hs_t1"/>
@@ -465177,13 +464165,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03944e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03944e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03944c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03944c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11716" sboTerm="SBO:0000185" id="MAR11716" name="Transport of Sphingomyelin (D18:1/21:0), Active" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11716" sboTerm="SBO:0000185" id="R_MAR11716" name="Transport of Sphingomyelin (D18:1/21:0), Active" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -465191,7 +464179,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11716">
+            <rdf:Description rdf:about="#R_MAR11716">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.6.3.44"/>
@@ -465203,15 +464191,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03946c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03946c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03946e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03946e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -465220,7 +464208,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR11717" sboTerm="SBO:0000185" id="MAR11717" name="Transport of Sphingomyelin (D18:1/21:0), Vescicular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11717" sboTerm="SBO:0000185" id="R_MAR11717" name="Transport of Sphingomyelin (D18:1/21:0), Vescicular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -465229,7 +464217,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11717">
+            <rdf:Description rdf:about="#R_MAR11717">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/SPHMYLN18121_hs_t1"/>
@@ -465239,13 +464227,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03946e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03946e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03946c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03946c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11718" sboTerm="SBO:0000185" id="MAR11718" name="Transport of Sphingomyelin (D18:1/22:0), Active Transport" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11718" sboTerm="SBO:0000185" id="R_MAR11718" name="Transport of Sphingomyelin (D18:1/22:0), Active Transport" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -465253,7 +464241,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11718">
+            <rdf:Description rdf:about="#R_MAR11718">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.6.3.44"/>
@@ -465265,15 +464253,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03948c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03948c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03948e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03948e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -465282,7 +464270,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR11719" sboTerm="SBO:0000185" id="MAR11719" name="Transport of Sphingomyelin (D18:1/22:0), Vescicular Transport" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11719" sboTerm="SBO:0000185" id="R_MAR11719" name="Transport of Sphingomyelin (D18:1/22:0), Vescicular Transport" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -465291,7 +464279,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11719">
+            <rdf:Description rdf:about="#R_MAR11719">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/SPHMYLN18122_hs_t1"/>
@@ -465301,13 +464289,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03948e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03948e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03948c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03948c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11720" sboTerm="SBO:0000185" id="MAR11720" name="Transport of Sphingomyelin (D18:1/22:1), Active" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11720" sboTerm="SBO:0000185" id="R_MAR11720" name="Transport of Sphingomyelin (D18:1/22:1), Active" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -465315,7 +464303,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11720">
+            <rdf:Description rdf:about="#R_MAR11720">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.6.3.44"/>
@@ -465327,15 +464315,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03947c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03947c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03947e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03947e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -465344,7 +464332,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR11721" sboTerm="SBO:0000185" id="MAR11721" name="Transport of Sphingomyelin (D18:1/22:1), Vescicular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11721" sboTerm="SBO:0000185" id="R_MAR11721" name="Transport of Sphingomyelin (D18:1/22:1), Vescicular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -465353,7 +464341,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11721">
+            <rdf:Description rdf:about="#R_MAR11721">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/SPHMYLN181221_hs_t1"/>
@@ -465363,13 +464351,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03947e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03947e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03947c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03947c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11722" sboTerm="SBO:0000185" id="MAR11722" name="Transport of Sphingomyelin (D18:1/23:0), Active" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11722" sboTerm="SBO:0000185" id="R_MAR11722" name="Transport of Sphingomyelin (D18:1/23:0), Active" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -465377,7 +464365,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11722">
+            <rdf:Description rdf:about="#R_MAR11722">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.6.3.44"/>
@@ -465389,15 +464377,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03949c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03949c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03949e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03949e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -465406,7 +464394,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR11723" sboTerm="SBO:0000185" id="MAR11723" name="Transport of Sphingomyelin (D18:1/23:0), Vescicular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11723" sboTerm="SBO:0000185" id="R_MAR11723" name="Transport of Sphingomyelin (D18:1/23:0), Vescicular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -465415,7 +464403,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11723">
+            <rdf:Description rdf:about="#R_MAR11723">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/SPHMYLN18123_hs_t1"/>
@@ -465425,13 +464413,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03949e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03949e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03949c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03949c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11724" sboTerm="SBO:0000185" id="MAR11724" name="Transport of Sphingomyelin (D18:0/24:0), Active Transport" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11724" sboTerm="SBO:0000185" id="R_MAR11724" name="Transport of Sphingomyelin (D18:0/24:0), Active Transport" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -465439,7 +464427,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11724">
+            <rdf:Description rdf:about="#R_MAR11724">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.6.3.44"/>
@@ -465451,15 +464439,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03950c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03950c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03950e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03950e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -465468,7 +464456,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR11725" sboTerm="SBO:0000185" id="MAR11725" name="Transport of Sphingomyelin (D18:0/24:0), Vescicular Transport" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11725" sboTerm="SBO:0000185" id="R_MAR11725" name="Transport of Sphingomyelin (D18:0/24:0), Vescicular Transport" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -465477,7 +464465,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11725">
+            <rdf:Description rdf:about="#R_MAR11725">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/SPHMYLN1824_hs_t1"/>
@@ -465487,13 +464475,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03950e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03950e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03950c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03950c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11726" sboTerm="SBO:0000185" id="MAR11726" name="Transport of Sphingomyelin (D18:0/25:0), Active Transport" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11726" sboTerm="SBO:0000185" id="R_MAR11726" name="Transport of Sphingomyelin (D18:0/25:0), Active Transport" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -465501,7 +464489,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11726">
+            <rdf:Description rdf:about="#R_MAR11726">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.6.3.44"/>
@@ -465513,15 +464501,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03951c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03951c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03951e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03951e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -465530,7 +464518,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR11727" sboTerm="SBO:0000185" id="MAR11727" name="Transport of Sphingomyelin (D18:0/25:0), Vescicular Transport" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11727" sboTerm="SBO:0000185" id="R_MAR11727" name="Transport of Sphingomyelin (D18:0/25:0), Vescicular Transport" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -465539,7 +464527,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11727">
+            <rdf:Description rdf:about="#R_MAR11727">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/SPHMYLN1825_hs_t1"/>
@@ -465549,13 +464537,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03951e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03951e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03951c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03951c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11728" sboTerm="SBO:0000185" id="MAR11728" name="Transport of 2-Hydroxy-Isocaproate, Extracellular, Uptake" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11728" sboTerm="SBO:0000185" id="R_MAR11728" name="Transport of 2-Hydroxy-Isocaproate, Extracellular, Uptake" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -465563,7 +464551,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11728">
+            <rdf:Description rdf:about="#R_MAR11728">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.6.3.44"/>
@@ -465574,13 +464562,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03187e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03187e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03187c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03187c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11729" sboTerm="SBO:0000185" id="MAR11729" name="Transport of 2-Hydroxy-Isocaproate, Extracellular, Secretion" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11729" sboTerm="SBO:0000185" id="R_MAR11729" name="Transport of 2-Hydroxy-Isocaproate, Extracellular, Secretion" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -465588,7 +464576,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11729">
+            <rdf:Description rdf:about="#R_MAR11729">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/2HXIC_Lt2e"/>
@@ -465598,13 +464586,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03187c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03187c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03187e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03187e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11730" sboTerm="SBO:0000627" id="MAR11730" name="Exchange of 2-Hydroxy-Isocaproate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11730" sboTerm="SBO:0000627" id="R_MAR11730" name="Exchange of 2-Hydroxy-Isocaproate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -465612,7 +464600,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11730">
+            <rdf:Description rdf:about="#R_MAR11730">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/EX_2hxic_L[e]"/>
@@ -465622,10 +464610,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03187e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03187e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR11731" sboTerm="SBO:0000185" id="MAR11731" name="Transport of 2-Hydroxy-Glutarate, Extracellular, Antiport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11731" sboTerm="SBO:0000185" id="R_MAR11731" name="Transport of 2-Hydroxy-Glutarate, Extracellular, Antiport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -465633,7 +464621,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11731">
+            <rdf:Description rdf:about="#R_MAR11731">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/2HYDOGOAT3t"/>
@@ -465644,18 +464632,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01306e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03188c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01306e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03188c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01306c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03188e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01306c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03188e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG3168"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR11732" sboTerm="SBO:0000627" id="MAR11732" name="Exchnage of 2-Hydroxy-Glutarate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11732" sboTerm="SBO:0000627" id="R_MAR11732" name="Exchnage of 2-Hydroxy-Glutarate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -465663,7 +464651,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11732">
+            <rdf:Description rdf:about="#R_MAR11732">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/EX_2hydog[e]"/>
@@ -465673,10 +464661,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03188e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03188e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR11733" sboTerm="SBO:0000185" id="MAR11733" name="Transport of 2-Hydroxy-Glutarate, Extracellular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11733" sboTerm="SBO:0000185" id="R_MAR11733" name="Transport of 2-Hydroxy-Glutarate, Extracellular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -465685,7 +464673,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11733">
+            <rdf:Description rdf:about="#R_MAR11733">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/2HYDOGte"/>
@@ -465696,13 +464684,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03188c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03188c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03188e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03188e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11734" sboTerm="SBO:0000185" id="MAR11734" name="Transport of Glutarate, Extracellular, Antiport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11734" sboTerm="SBO:0000185" id="R_MAR11734" name="Transport of Glutarate, Extracellular, Antiport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -465710,7 +464698,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11734">
+            <rdf:Description rdf:about="#R_MAR11734">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GLUTAROAT3t"/>
@@ -465721,18 +464709,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01306e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03614c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01306e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03614c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01306c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03614e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01306c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03614e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG3168"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR11735" sboTerm="SBO:0000185" id="MAR11735" name="Transport of Glutarate, Extracellular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11735" sboTerm="SBO:0000185" id="R_MAR11735" name="Transport of Glutarate, Extracellular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -465740,7 +464728,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11735">
+            <rdf:Description rdf:about="#R_MAR11735">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GLUTARte"/>
@@ -465751,13 +464739,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03614c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03614c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03614e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03614e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11736" sboTerm="SBO:0000176" id="MAR11736" name="Hydrolysis of Trans7, 10-Hexadecadienoylcoa to 7Z, 10Z-Hexadecadienoic Acid" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11736" sboTerm="SBO:0000176" id="R_MAR11736" name="Hydrolysis of Trans7, 10-Hexadecadienoylcoa to 7Z, 10Z-Hexadecadienoic Acid" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -465766,7 +464754,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11736">
+            <rdf:Description rdf:about="#R_MAR11736">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.2.2"/>
@@ -465778,13 +464766,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03982m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03982m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03981m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03981m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -465793,7 +464781,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR11738" sboTerm="SBO:0000185" id="MAR11738" name="Transport of 7Z, 10Z-Hexadecadienoic Acid into Extracellular Space" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11738" sboTerm="SBO:0000185" id="R_MAR11738" name="Transport of 7Z, 10Z-Hexadecadienoic Acid into Extracellular Space" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -465802,7 +464790,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11738">
+            <rdf:Description rdf:about="#R_MAR11738">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/THEXDDte"/>
@@ -465813,18 +464801,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03981c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03981c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03981e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03981e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11739" sboTerm="SBO:0000627" id="MAR11739" name="Exchange of 7Z, 10Z-Hexadecadienoic Acid" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11739" sboTerm="SBO:0000627" id="R_MAR11739" name="Exchange of 7Z, 10Z-Hexadecadienoic Acid" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -465832,7 +464820,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11739">
+            <rdf:Description rdf:about="#R_MAR11739">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_thexdd_e"/>
@@ -465843,10 +464831,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03981e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03981e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR11740" sboTerm="SBO:0000176" id="MAR11740" name="Hydrolysis of 7, 10, 13-Hexadecatrienoylcoa to 7, 10, 13-Hexadecatrienoic Acid" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11740" sboTerm="SBO:0000176" id="R_MAR11740" name="Hydrolysis of 7, 10, 13-Hexadecatrienoylcoa to 7, 10, 13-Hexadecatrienoic Acid" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -465855,7 +464843,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11740">
+            <rdf:Description rdf:about="#R_MAR11740">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.2.2"/>
@@ -465867,13 +464855,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03658m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03658m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03657m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03657m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -465882,7 +464870,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR11742" sboTerm="SBO:0000185" id="MAR11742" name="Transport of 7, 10, 13-Hexadecatrienoic Acid into Extracellular Space" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11742" sboTerm="SBO:0000185" id="R_MAR11742" name="Transport of 7, 10, 13-Hexadecatrienoic Acid into Extracellular Space" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -465891,7 +464879,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11742">
+            <rdf:Description rdf:about="#R_MAR11742">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/HEXDTRte"/>
@@ -465902,18 +464890,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03657c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03657c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03657e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03657e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11743" sboTerm="SBO:0000627" id="MAR11743" name="Exchange of 7, 10, 13-Hexadecatrienoic Acid" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11743" sboTerm="SBO:0000627" id="R_MAR11743" name="Exchange of 7, 10, 13-Hexadecatrienoic Acid" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -465921,7 +464909,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11743">
+            <rdf:Description rdf:about="#R_MAR11743">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_hexdtr_e"/>
@@ -465932,10 +464920,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03657e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03657e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR11745" sboTerm="SBO:0000176" id="MAR11745" name="Hydrolysis of Heptadecenoyl Coa" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11745" sboTerm="SBO:0000176" id="R_MAR11745" name="Hydrolysis of Heptadecenoyl Coa" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -465944,7 +464932,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11745">
+            <rdf:Description rdf:about="#R_MAR11745">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.2.2"/>
@@ -465956,13 +464944,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03683m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03683m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03682m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03682m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -465971,7 +464959,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR11747" sboTerm="SBO:0000185" id="MAR11747" name="Transport of Trans-Delta-2-Heptadecanoic Acid, Extracellular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11747" sboTerm="SBO:0000185" id="R_MAR11747" name="Transport of Trans-Delta-2-Heptadecanoic Acid, Extracellular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -465980,7 +464968,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11747">
+            <rdf:Description rdf:about="#R_MAR11747">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/HPDECEte"/>
@@ -465991,18 +464979,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03682c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03682c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03682e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03682e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11748" sboTerm="SBO:0000627" id="MAR11748" name="Exchange of Trans-Delta-2-Heptadecanoic Acid" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11748" sboTerm="SBO:0000627" id="R_MAR11748" name="Exchange of Trans-Delta-2-Heptadecanoic Acid" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -466010,7 +464998,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11748">
+            <rdf:Description rdf:about="#R_MAR11748">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_hpdece_e"/>
@@ -466021,10 +465009,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03682e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03682e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR11749" sboTerm="SBO:0000176" id="MAR11749" name="Hydrolysis of Trans, Cis, Cis-2, 11, 14-Eicosatrienoyl Coenzyme A to Trans, Cis, Cis-2, 11, 14-Eicosatrienoic Acid" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11749" sboTerm="SBO:0000176" id="R_MAR11749" name="Hydrolysis of Trans, Cis, Cis-2, 11, 14-Eicosatrienoyl Coenzyme A to Trans, Cis, Cis-2, 11, 14-Eicosatrienoic Acid" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -466033,7 +465021,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11749">
+            <rdf:Description rdf:about="#R_MAR11749">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.2.2"/>
@@ -466045,13 +465033,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03007c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03007c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03568c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03568c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -466060,7 +465048,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR11750" sboTerm="SBO:0000185" id="MAR11750" name="Transport of Trans, Cis, Cis-2, 11, 14-Eicosatrienoic Acid" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11750" sboTerm="SBO:0000185" id="R_MAR11750" name="Transport of Trans, Cis, Cis-2, 11, 14-Eicosatrienoic Acid" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -466068,7 +465056,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11750">
+            <rdf:Description rdf:about="#R_MAR11750">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EIC21114TRte"/>
@@ -466079,18 +465067,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03568c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03568c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03568e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03568e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11751" sboTerm="SBO:0000627" id="MAR11751" name="Exchange of Trans, Cis, Cis-2, 11, 14-Eicosatrienoic Acid" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11751" sboTerm="SBO:0000627" id="R_MAR11751" name="Exchange of Trans, Cis, Cis-2, 11, 14-Eicosatrienoic Acid" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -466098,7 +465086,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11751">
+            <rdf:Description rdf:about="#R_MAR11751">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_eic21114tr_e"/>
@@ -466109,10 +465097,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03568e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03568e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR11752" sboTerm="SBO:0000176" id="MAR11752" name="Hydrolysis of 5, 8, 11, 14, 17-Eicosapentenoylcoa to 5, 8, 11, 14, 17-Eicosapentenoic Acid" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11752" sboTerm="SBO:0000176" id="R_MAR11752" name="Hydrolysis of 5, 8, 11, 14, 17-Eicosapentenoylcoa to 5, 8, 11, 14, 17-Eicosapentenoic Acid" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -466121,7 +465109,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11752">
+            <rdf:Description rdf:about="#R_MAR11752">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.2.2"/>
@@ -466133,13 +465121,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03284m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03284m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01597m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03283m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03283m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -466148,7 +465136,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR11754" sboTerm="SBO:0000185" id="MAR11754" name="Transport of 5, 8, 11, 14, 17-Eicosapentenoic Acid, Extracellular Space" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11754" sboTerm="SBO:0000185" id="R_MAR11754" name="Transport of 5, 8, 11, 14, 17-Eicosapentenoic Acid, Extracellular Space" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -466157,7 +465145,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11754">
+            <rdf:Description rdf:about="#R_MAR11754">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/5EIPENCte"/>
@@ -466168,18 +465156,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03283c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03283c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03283e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03283e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11755" sboTerm="SBO:0000627" id="MAR11755" name="Exchange of 5, 8, 11, 14, 17-Eicosapentenoic Acid" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11755" sboTerm="SBO:0000627" id="R_MAR11755" name="Exchange of 5, 8, 11, 14, 17-Eicosapentenoic Acid" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -466187,7 +465175,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11755">
+            <rdf:Description rdf:about="#R_MAR11755">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_5eipenc_e"/>
@@ -466198,10 +465186,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03283e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03283e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR11756" sboTerm="SBO:0000185" id="MAR11756" name="Transport of Trans-4-Coumarate, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11756" sboTerm="SBO:0000185" id="R_MAR11756" name="Transport of Trans-4-Coumarate, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -466210,7 +465198,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11756">
+            <rdf:Description rdf:about="#R_MAR11756">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/T4HCINNMte"/>
@@ -466221,12 +465209,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00981c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02147e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00981c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02147e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02147c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00981e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02147c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00981e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -466246,7 +465234,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR11757" sboTerm="SBO:0000185" id="MAR11757" name="Transport of Androst-4-Ene-3, 17-Dione, Extracellular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11757" sboTerm="SBO:0000185" id="R_MAR11757" name="Transport of Androst-4-Ene-3, 17-Dione, Extracellular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -466255,7 +465243,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11757">
+            <rdf:Description rdf:about="#R_MAR11757">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ANDRSTNDNte"/>
@@ -466266,21 +465254,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00971c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00971c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00971e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00971e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Mdr50"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR11758" sboTerm="SBO:0000185" id="MAR11758" name="Transport of 16Alpha-Hydroxydehydroepiandrosterone, Extracellular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11758" sboTerm="SBO:0000185" id="R_MAR11758" name="Transport of 16Alpha-Hydroxydehydroepiandrosterone, Extracellular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -466289,7 +465277,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11758">
+            <rdf:Description rdf:about="#R_MAR11758">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EANDRSTRNte"/>
@@ -466300,21 +465288,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00399c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00399c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00399e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00399e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Mdr50"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR11759" sboTerm="SBO:0000185" id="MAR11759" name="Transport of 3Alpha-Hydroxy-5Beta-Androstan-17-One, Extracellular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11759" sboTerm="SBO:0000185" id="R_MAR11759" name="Transport of 3Alpha-Hydroxy-5Beta-Androstan-17-One, Extracellular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -466323,7 +465311,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11759">
+            <rdf:Description rdf:about="#R_MAR11759">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/AHANDROSTANte"/>
@@ -466334,21 +465322,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01800c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01800c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01800e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01800e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Mdr50"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR11760" sboTerm="SBO:0000185" id="MAR11760" name="Transport of 5Alpha-Androstane-3, 17-Dione, Extracellular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11760" sboTerm="SBO:0000185" id="R_MAR11760" name="Transport of 5Alpha-Androstane-3, 17-Dione, Extracellular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -466357,7 +465345,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11760">
+            <rdf:Description rdf:about="#R_MAR11760">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ANDRSTANDRte"/>
@@ -466368,21 +465356,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01064c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01064c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01064e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01064e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Mdr50"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR11761" sboTerm="SBO:0000185" id="MAR11761" name="Transport of 5Alpha-Androstane-3Alpha, 17Beta-Diol, Extracellular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11761" sboTerm="SBO:0000185" id="R_MAR11761" name="Transport of 5Alpha-Androstane-3Alpha, 17Beta-Diol, Extracellular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -466391,7 +465379,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11761">
+            <rdf:Description rdf:about="#R_MAR11761">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CE2209te"/>
@@ -466402,21 +465390,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01065c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01065c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01065e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01065e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Mdr50"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR11762" sboTerm="SBO:0000185" id="MAR11762" name="Transport of 2-Hydroxyestradiol-17Beta, Extracellular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11762" sboTerm="SBO:0000185" id="R_MAR11762" name="Transport of 2-Hydroxyestradiol-17Beta, Extracellular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -466425,7 +465413,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11762">
+            <rdf:Description rdf:about="#R_MAR11762">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/C05301te"/>
@@ -466436,21 +465424,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00649c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00649c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00649e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00649e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Mdr50"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR11763" sboTerm="SBO:0000185" id="MAR11763" name="Transport of 2-Methoxyestrone, Extracellular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11763" sboTerm="SBO:0000185" id="R_MAR11763" name="Transport of 2-Methoxyestrone, Extracellular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -466459,7 +465447,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11763">
+            <rdf:Description rdf:about="#R_MAR11763">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/C05299te"/>
@@ -466470,21 +465458,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00660c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00660c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00660e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00660e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Mdr50"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR11764" sboTerm="SBO:0000185" id="MAR11764" name="Transport of 2-Methoxyestradiol-17Beta, Extracellular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11764" sboTerm="SBO:0000185" id="R_MAR11764" name="Transport of 2-Methoxyestradiol-17Beta, Extracellular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -466493,7 +465481,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11764">
+            <rdf:Description rdf:about="#R_MAR11764">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/C05302te"/>
@@ -466504,21 +465492,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00659c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00659c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00659e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00659e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Mdr50"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR11765" sboTerm="SBO:0000185" id="MAR11765" name="Transport of 21-Hydroxyallopregnanolone, Extracellular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11765" sboTerm="SBO:0000185" id="R_MAR11765" name="Transport of 21-Hydroxyallopregnanolone, Extracellular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -466527,7 +465515,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11765">
+            <rdf:Description rdf:about="#R_MAR11765">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CE5072te"/>
@@ -466538,21 +465526,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00604c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00604c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00604e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00604e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Mdr50"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR11766" sboTerm="SBO:0000185" id="MAR11766" name="Transport of 11-Deoxycortisol, Extracellular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11766" sboTerm="SBO:0000185" id="R_MAR11766" name="Transport of 11-Deoxycortisol, Extracellular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -466561,7 +465549,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11766">
+            <rdf:Description rdf:about="#R_MAR11766">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/11DOCRTSLte"/>
@@ -466572,21 +465560,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00295c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00295c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00295e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00295e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Mdr50"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR11767" sboTerm="SBO:0000185" id="MAR11767" name="Transport of 11-Deoxycorticosterone, Extracellular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11767" sboTerm="SBO:0000185" id="R_MAR11767" name="Transport of 11-Deoxycorticosterone, Extracellular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -466595,7 +465583,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11767">
+            <rdf:Description rdf:about="#R_MAR11767">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/11DOCRTSTRNte"/>
@@ -466606,21 +465594,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00294c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00294c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00294e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00294e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Mdr50"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR11768" sboTerm="SBO:0000185" id="MAR11768" name="Transport of Pregnenolone, Extracellular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11768" sboTerm="SBO:0000185" id="R_MAR11768" name="Transport of Pregnenolone, Extracellular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -466629,7 +465617,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11768">
+            <rdf:Description rdf:about="#R_MAR11768">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PRGNLONEte"/>
@@ -466640,21 +465628,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02763c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02763c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02763e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02763e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Mdr50"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR11769" sboTerm="SBO:0000185" id="MAR11769" name="Transport of Allopregnanolone, Extracellular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11769" sboTerm="SBO:0000185" id="R_MAR11769" name="Transport of Allopregnanolone, Extracellular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -466663,7 +465651,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11769">
+            <rdf:Description rdf:about="#R_MAR11769">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CE2211te"/>
@@ -466674,21 +465662,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01314c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01314c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01314e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01314e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Mdr50"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR11770" sboTerm="SBO:0000185" id="MAR11770" name="Transport of 17Alpha-Hydroxyprogesterone, Extracellular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11770" sboTerm="SBO:0000185" id="R_MAR11770" name="Transport of 17Alpha-Hydroxyprogesterone, Extracellular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -466697,7 +465685,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11770">
+            <rdf:Description rdf:about="#R_MAR11770">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/17AHPRGSTRNte"/>
@@ -466708,21 +465696,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00409c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00409c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00409e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00409e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Mdr50"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR11771" sboTerm="SBO:0000185" id="MAR11771" name="Transport of 17Alpha-Hydroxypregnenolone, Extracellular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11771" sboTerm="SBO:0000185" id="R_MAR11771" name="Transport of 17Alpha-Hydroxypregnenolone, Extracellular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -466731,7 +465719,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11771">
+            <rdf:Description rdf:about="#R_MAR11771">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/17AHPRGNLONEte"/>
@@ -466742,21 +465730,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00408c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00408c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00408e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00408e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Mdr50"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR11772" sboTerm="SBO:0000185" id="MAR11772" name="Transport of 5Alpha-Pregnane-3, 20-Dione, Extracellular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11772" sboTerm="SBO:0000185" id="R_MAR11772" name="Transport of 5Alpha-Pregnane-3, 20-Dione, Extracellular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -466765,7 +465753,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11772">
+            <rdf:Description rdf:about="#R_MAR11772">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/C03681te"/>
@@ -466776,21 +465764,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01072c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01072c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01072e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01072e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Mdr50"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR11773" sboTerm="SBO:0000185" id="MAR11773" name="Transport of Pregnenolone Sulfate, Extracellular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11773" sboTerm="SBO:0000185" id="R_MAR11773" name="Transport of Pregnenolone Sulfate, Extracellular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -466799,7 +465787,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11773">
+            <rdf:Description rdf:about="#R_MAR11773">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PRGNLONESte"/>
@@ -466810,21 +465798,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02762c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02762c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02762e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02762e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Mdr50"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR11774" sboTerm="SBO:0000185" id="MAR11774" name="Transport of 17Alpha-Hydroxypregnenolone Sulfate, Extracellular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11774" sboTerm="SBO:0000185" id="R_MAR11774" name="Transport of 17Alpha-Hydroxypregnenolone Sulfate, Extracellular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -466833,7 +465821,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11774">
+            <rdf:Description rdf:about="#R_MAR11774">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CE1352te"/>
@@ -466844,21 +465832,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00407c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00407c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00407e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00407e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Mdr50"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR11775" sboTerm="SBO:0000185" id="MAR11775" name="Facilitated Diffusion via Aquaporin into Extracellular Space" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11775" sboTerm="SBO:0000185" id="R_MAR11775" name="Facilitated Diffusion via Aquaporin into Extracellular Space" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -466867,7 +465855,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11775">
+            <rdf:Description rdf:about="#R_MAR11775">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.6.3.44"/>
@@ -466879,16 +465867,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02473c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02473c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02473e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02473e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Eglp3"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR11776" sboTerm="SBO:0000185" id="MAR11776" name="Transport by Atb Binding Cassette Transporter ABCc2 into Extracellular Space" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11776" sboTerm="SBO:0000185" id="R_MAR11776" name="Transport by Atb Binding Cassette Transporter ABCc2 into Extracellular Space" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -466897,7 +465885,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11776">
+            <rdf:Description rdf:about="#R_MAR11776">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.6.3.44"/>
@@ -466909,21 +465897,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01603c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01603c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01603e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01603e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="MRP"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR11778" sboTerm="SBO:0000185" id="MAR11778" name="Transport (ATP-Dependent) into Extracellular Space" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11778" sboTerm="SBO:0000185" id="R_MAR11778" name="Transport (ATP-Dependent) into Extracellular Space" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -466932,7 +465920,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11778">
+            <rdf:Description rdf:about="#R_MAR11778">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.6.3.44"/>
@@ -466944,21 +465932,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00988c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00988c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00988e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00988e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="MRP"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR11779" sboTerm="SBO:0000185" id="MAR11779" name="Transport by Glut-5 Transporter into Extracellular Space" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11779" sboTerm="SBO:0000185" id="R_MAR11779" name="Transport by Glut-5 Transporter into Extracellular Space" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -466967,7 +465955,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11779">
+            <rdf:Description rdf:about="#R_MAR11779">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GLCRt1"/>
@@ -466980,10 +465968,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01681e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01681e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01681c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01681c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -466994,7 +465982,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR11780" sboTerm="SBO:0000185" id="MAR11780" name="2-Hydroxyphenylacetate Proton Symport, Cytosol" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11780" sboTerm="SBO:0000185" id="R_MAR11780" name="2-Hydroxyphenylacetate Proton Symport, Cytosol" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -467003,7 +465991,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11780">
+            <rdf:Description rdf:about="#R_MAR11780">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.6.3.44"/>
@@ -467015,18 +466003,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00654c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00654c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00654e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00654e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="hrm"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR11781" sboTerm="SBO:0000185" id="MAR11781" name="N (8)-Acetylspermidinium Transport, Cytosol" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11781" sboTerm="SBO:0000185" id="R_MAR11781" name="N (8)-Acetylspermidinium Transport, Cytosol" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -467035,7 +466023,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11781">
+            <rdf:Description rdf:about="#R_MAR11781">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/N8ASPMDte"/>
@@ -467046,16 +466034,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02518c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02518c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02518e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02518e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG6126"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR11782" sboTerm="SBO:0000185" id="MAR11782" name="Facilitated Diffusion Through Uniport Oct1 into Extracellular Space" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11782" sboTerm="SBO:0000185" id="R_MAR11782" name="Facilitated Diffusion Through Uniport Oct1 into Extracellular Space" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -467064,7 +466052,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11782">
+            <rdf:Description rdf:about="#R_MAR11782">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.6.3.44"/>
@@ -467076,16 +466064,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02601c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02601c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02601e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02601e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG6126"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR11783" sboTerm="SBO:0000185" id="MAR11783" name="Facilitated Diffusion Through Uniport Oct2 into Extracellular Space" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11783" sboTerm="SBO:0000185" id="R_MAR11783" name="Facilitated Diffusion Through Uniport Oct2 into Extracellular Space" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -467094,7 +466082,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11783">
+            <rdf:Description rdf:about="#R_MAR11783">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CE4890te2"/>
@@ -467105,16 +466093,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02603c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02603c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02603e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02603e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG6126"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR11784" sboTerm="SBO:0000185" id="MAR11784" name="Facilitated Diffusion Through Uniport Oct2 into Extracellular Space" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11784" sboTerm="SBO:0000185" id="R_MAR11784" name="Facilitated Diffusion Through Uniport Oct2 into Extracellular Space" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -467123,7 +466111,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11784">
+            <rdf:Description rdf:about="#R_MAR11784">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.6.3.44"/>
@@ -467135,16 +466123,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02875c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02875c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02875e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02875e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG6126"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR11785" sboTerm="SBO:0000185" id="MAR11785" name="Transport by Monocarboxylate Transporter-2 into Extracellular Space" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11785" sboTerm="SBO:0000185" id="R_MAR11785" name="Transport by Monocarboxylate Transporter-2 into Extracellular Space" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -467153,7 +466141,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11785">
+            <rdf:Description rdf:about="#R_MAR11785">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/2OBUTt"/>
@@ -467164,18 +466152,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00671e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00671e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00671c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00671c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="hrm"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR11786" sboTerm="SBO:0000185" id="MAR11786" name="Transport by ABCg2 into Extracellular Space" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11786" sboTerm="SBO:0000185" id="R_MAR11786" name="Transport by ABCg2 into Extracellular Space" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -467184,7 +466172,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11786">
+            <rdf:Description rdf:about="#R_MAR11786">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.6.3.44"/>
@@ -467196,21 +466184,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02803c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02803c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02803e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02803e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="w"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR11787" sboTerm="SBO:0000185" id="MAR11787" name="Transport by Pcet into Extracellular Space" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11787" sboTerm="SBO:0000185" id="R_MAR11787" name="Transport by Pcet into Extracellular Space" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -467219,7 +466207,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11787">
+            <rdf:Description rdf:about="#R_MAR11787">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/MLTHFte"/>
@@ -467230,18 +466218,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01045e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01045e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01045c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01045c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG30345"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR11788" sboTerm="SBO:0000185" id="MAR11788" name="Tyraminium Proton Symport, Cytosol" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11788" sboTerm="SBO:0000185" id="R_MAR11788" name="Tyraminium Proton Symport, Cytosol" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -467250,7 +466238,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11788">
+            <rdf:Description rdf:about="#R_MAR11788">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.6.3.44"/>
@@ -467262,18 +466250,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03099c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03099c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03099e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03099e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Ent3"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR11789" sboTerm="SBO:0000185" id="MAR11789" name="Tryptaminium Transport, Cytosol" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11789" sboTerm="SBO:0000185" id="R_MAR11789" name="Tryptaminium Transport, Cytosol" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -467282,7 +466270,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11789">
+            <rdf:Description rdf:about="#R_MAR11789">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/TRYPTAte"/>
@@ -467293,18 +466281,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03088c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03088c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03088e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03088e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Ent3"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR11790" sboTerm="SBO:0000185" id="MAR11790" name="Transport by Pmat Transporter into Extracellular Space" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11790" sboTerm="SBO:0000185" id="R_MAR11790" name="Transport by Pmat Transporter into Extracellular Space" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -467313,7 +466301,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11790">
+            <rdf:Description rdf:about="#R_MAR11790">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.6.3.44"/>
@@ -467325,18 +466313,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02603c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02603c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02603e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02603e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Ent3"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR11791" sboTerm="SBO:0000185" id="MAR11791" name="Transport in via Sodium Symport into Extracellular Space" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11791" sboTerm="SBO:0000185" id="R_MAR11791" name="Transport in via Sodium Symport into Extracellular Space" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -467345,7 +466333,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11791">
+            <rdf:Description rdf:about="#R_MAR11791">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/SELMETHte"/>
@@ -467356,12 +466344,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02891e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02891e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02891c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02891c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -467372,7 +466360,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR11792" sboTerm="SBO:0000185" id="MAR11792" name="Transport (ATP-Dependent) into Extracellular Space" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11792" sboTerm="SBO:0000185" id="R_MAR11792" name="Transport (ATP-Dependent) into Extracellular Space" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -467381,7 +466369,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11792">
+            <rdf:Description rdf:about="#R_MAR11792">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.6.3.44"/>
@@ -467393,15 +466381,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00028c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00028c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00028e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00028e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -467411,7 +466399,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR11793" sboTerm="SBO:0000185" id="MAR11793" name="Transport (ATP-Dependent) into Extracellular Space" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11793" sboTerm="SBO:0000185" id="R_MAR11793" name="Transport (ATP-Dependent) into Extracellular Space" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -467420,7 +466408,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11793">
+            <rdf:Description rdf:about="#R_MAR11793">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CE7085te"/>
@@ -467431,15 +466419,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01039e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -467449,7 +466437,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR11794" sboTerm="SBO:0000185" id="MAR11794" name="Transport (ATP-Dependent) into Extracellular Space" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11794" sboTerm="SBO:0000185" id="R_MAR11794" name="Transport (ATP-Dependent) into Extracellular Space" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -467458,7 +466446,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11794">
+            <rdf:Description rdf:about="#R_MAR11794">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.6.3.44"/>
@@ -467470,15 +466458,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01050c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01050c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01050e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01050e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -467488,7 +466476,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR11795" sboTerm="SBO:0000185" id="MAR11795" name="Transport (ATP-Dependent) into Extracellular Space" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11795" sboTerm="SBO:0000185" id="R_MAR11795" name="Transport (ATP-Dependent) into Extracellular Space" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -467497,7 +466485,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11795">
+            <rdf:Description rdf:about="#R_MAR11795">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CE4877te"/>
@@ -467508,15 +466496,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00385c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00385c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00385e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00385e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -467526,7 +466514,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR11796" sboTerm="SBO:0000185" id="MAR11796" name="Transport (ATP-Dependent) into Extracellular Space" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11796" sboTerm="SBO:0000185" id="R_MAR11796" name="Transport (ATP-Dependent) into Extracellular Space" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -467535,7 +466523,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11796">
+            <rdf:Description rdf:about="#R_MAR11796">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.6.3.44"/>
@@ -467547,15 +466535,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00293c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00293c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00293e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00293e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -467565,7 +466553,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR11797" sboTerm="SBO:0000185" id="MAR11797" name="Transport by OATP1B Carriers into Extracellular Space" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11797" sboTerm="SBO:0000185" id="R_MAR11797" name="Transport by OATP1B Carriers into Extracellular Space" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -467574,7 +466562,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11797">
+            <rdf:Description rdf:about="#R_MAR11797">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/C05769te3"/>
@@ -467585,12 +466573,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01603e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01603e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01603c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01603c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -467602,7 +466590,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR11798" sboTerm="SBO:0000185" id="MAR11798" name="Transport by OATP1B Carriers into Extracellular Space" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11798" sboTerm="SBO:0000185" id="R_MAR11798" name="Transport by OATP1B Carriers into Extracellular Space" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -467611,7 +466599,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11798">
+            <rdf:Description rdf:about="#R_MAR11798">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.6.3.44"/>
@@ -467623,12 +466611,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01604e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01604e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01604c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01604c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -467640,7 +466628,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR11799" sboTerm="SBO:0000185" id="MAR11799" name="Transport by Atb Binding Cassette Transporter ABCc2 into Extracellular Space" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11799" sboTerm="SBO:0000185" id="R_MAR11799" name="Transport by Atb Binding Cassette Transporter ABCc2 into Extracellular Space" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -467649,7 +466637,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11799">
+            <rdf:Description rdf:about="#R_MAR11799">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/C05770te"/>
@@ -467660,15 +466648,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01604c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01604c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01604e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01604e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -467676,7 +466664,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR11801" sboTerm="SBO:0000185" id="MAR11801" name="Transport by Ent1/Ent2 into Extracellular Space" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11801" sboTerm="SBO:0000185" id="R_MAR11801" name="Transport by Ent1/Ent2 into Extracellular Space" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -467685,7 +466673,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11801">
+            <rdf:Description rdf:about="#R_MAR11801">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CE2705t"/>
@@ -467696,16 +466684,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02823e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02823e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02823c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02823c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Ent1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR11802" sboTerm="SBO:0000185" id="MAR11802" name="Export Mediated by ATP Binding Cassette (ABC) Transporters" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11802" sboTerm="SBO:0000185" id="R_MAR11802" name="Export Mediated by ATP Binding Cassette (ABC) Transporters" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -467713,7 +466701,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11802">
+            <rdf:Description rdf:about="#R_MAR11802">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.6.3.44"/>
@@ -467725,21 +466713,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02930c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02930c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02930e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02930e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="MRP"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR11803" sboTerm="SBO:0000185" id="MAR11803" name="Transport via Proton Antiport (Ammonium Transporter Rh Type C Or Type B) into Extracellular Space" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11803" sboTerm="SBO:0000185" id="R_MAR11803" name="Transport via Proton Antiport (Ammonium Transporter Rh Type C Or Type B) into Extracellular Space" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -467747,7 +466735,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11803">
+            <rdf:Description rdf:about="#R_MAR11803">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/MMAte"/>
@@ -467758,18 +466746,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02473e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02473e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02473c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02473c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Rh50"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR11804" sboTerm="SBO:0000185" id="MAR11804" name="Putrescine Export via Putrescine/Arginine Exchanger" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11804" sboTerm="SBO:0000185" id="R_MAR11804" name="Putrescine Export via Putrescine/Arginine Exchanger" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -467777,7 +466765,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11804">
+            <rdf:Description rdf:about="#R_MAR11804">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.6.3.44"/>
@@ -467789,12 +466777,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01365e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02812c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01365e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02812c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01365c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02812e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01365c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02812e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:and>
@@ -467806,7 +466794,7 @@
           </fbc:and>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR11805" sboTerm="SBO:0000185" id="MAR11805" name="Transport by Rfc into Extracellular Space" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11805" sboTerm="SBO:0000185" id="R_MAR11805" name="Transport by Rfc into Extracellular Space" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -467815,7 +466803,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11805">
+            <rdf:Description rdf:about="#R_MAR11805">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/MLTHFte2"/>
@@ -467826,12 +466814,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02147c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01045e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02147c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01045e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01045c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02147e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01045c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02147e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -467840,7 +466828,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR11806" sboTerm="SBO:0000185" id="MAR11806" name="Tyraminium Transport, Cytosol" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11806" sboTerm="SBO:0000185" id="R_MAR11806" name="Tyraminium Transport, Cytosol" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -467849,7 +466837,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11806">
+            <rdf:Description rdf:about="#R_MAR11806">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.6.3.44"/>
@@ -467861,16 +466849,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03099c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03099c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03099e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03099e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG6126"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR11807" sboTerm="SBO:0000185" id="MAR11807" name="Facilitated Diffusion Through Uniport Octs Transporters into Extracellular Space" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11807" sboTerm="SBO:0000185" id="R_MAR11807" name="Facilitated Diffusion Through Uniport Octs Transporters into Extracellular Space" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -467879,7 +466867,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11807">
+            <rdf:Description rdf:about="#R_MAR11807">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/13DAMPPte"/>
@@ -467890,16 +466878,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00248c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00248c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00248e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00248e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG6126"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR11808" sboTerm="SBO:0000185" id="MAR11808" name="Uptake via Octn2 Transporter into Extracellular Space" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11808" sboTerm="SBO:0000185" id="R_MAR11808" name="Uptake via Octn2 Transporter into Extracellular Space" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -467908,7 +466896,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11808">
+            <rdf:Description rdf:about="#R_MAR11808">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/HDD2CRNte2"/>
@@ -467919,12 +466907,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02117e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02117e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02117c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02117c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -467933,7 +466921,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR11809" sboTerm="SBO:0000185" id="MAR11809" name="Transport by ABCa11 into Extracellular Space" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11809" sboTerm="SBO:0000185" id="R_MAR11809" name="Transport by ABCa11 into Extracellular Space" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -467942,7 +466930,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11809">
+            <rdf:Description rdf:about="#R_MAR11809">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/MLTHFte1"/>
@@ -467953,15 +466941,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01045c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01045c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01045e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01045e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -467973,7 +466961,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR11810" sboTerm="SBO:0000185" id="MAR11810" name="Transport by Y+Lat-2 into Extracellular Space" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11810" sboTerm="SBO:0000185" id="R_MAR11810" name="Transport by Y+Lat-2 into Extracellular Space" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -467982,7 +466970,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11810">
+            <rdf:Description rdf:about="#R_MAR11810">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ARGN1ASPMDte"/>
@@ -467993,12 +466981,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01365e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02503c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01365e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02503c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01365c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02503e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01365c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02503e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:and>
@@ -468010,7 +466998,7 @@
           </fbc:and>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR11811" sboTerm="SBO:0000185" id="MAR11811" name="Transport by Oat1/Oat3 into Extracellular Space" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11811" sboTerm="SBO:0000185" id="R_MAR11811" name="Transport by Oat1/Oat3 into Extracellular Space" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -468019,7 +467007,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11811">
+            <rdf:Description rdf:about="#R_MAR11811">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CE1918te"/>
@@ -468030,12 +467018,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01306c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01110e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01306c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01110e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01110c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01306e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01110c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01306e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -468044,7 +467032,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR11812" sboTerm="SBO:0000185" id="MAR11812" name=" (3, 4-Dihydroxyphenyl)Acetate (Dopac) Transport, Cytosol" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11812" sboTerm="SBO:0000185" id="R_MAR11812" name=" (3, 4-Dihydroxyphenyl)Acetate (Dopac) Transport, Cytosol" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -468053,7 +467041,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11812">
+            <rdf:Description rdf:about="#R_MAR11812">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/34DHPHAte"/>
@@ -468064,10 +467052,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00729c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00729c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00729e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00729e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -468076,7 +467064,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR11813" sboTerm="SBO:0000185" id="MAR11813" name="3, 4-Dihydroxymandelate Transport, Cytosol" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11813" sboTerm="SBO:0000185" id="R_MAR11813" name="3, 4-Dihydroxymandelate Transport, Cytosol" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -468085,7 +467073,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11813">
+            <rdf:Description rdf:about="#R_MAR11813">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/34DHOXMANDte"/>
@@ -468096,10 +467084,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00727c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00727c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00727e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00727e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -468108,7 +467096,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR11814" sboTerm="SBO:0000185" id="MAR11814" name="5-Methoxytryptophol Transport, Cytosol" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11814" sboTerm="SBO:0000185" id="R_MAR11814" name="5-Methoxytryptophol Transport, Cytosol" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -468117,7 +467105,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11814">
+            <rdf:Description rdf:about="#R_MAR11814">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CE6205te"/>
@@ -468128,10 +467116,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01113c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01113c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01113e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01113e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -468140,7 +467128,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR11815" sboTerm="SBO:0000185" id="MAR11815" name="Transport As Vitamin D" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11815" sboTerm="SBO:0000185" id="R_MAR11815" name="Transport As Vitamin D" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -468148,7 +467136,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11815">
+            <rdf:Description rdf:about="#R_MAR11815">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/1A25DHVITD3te"/>
@@ -468159,10 +467147,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01417e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01417e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01417c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01417c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -468174,7 +467162,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR11816" sboTerm="SBO:0000185" id="MAR11816" name="Transport of Isobutyrylglycine into Cytosol" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11816" sboTerm="SBO:0000185" id="R_MAR11816" name="Transport of Isobutyrylglycine into Cytosol" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -468183,7 +467171,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11816">
+            <rdf:Description rdf:about="#R_MAR11816">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ISOBUTtm"/>
@@ -468194,13 +467182,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02181m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02181m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02181c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02181c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11817" sboTerm="SBO:0000185" id="MAR11817" name="Transport of Isobutyrylglycine into Extracellular Space" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11817" sboTerm="SBO:0000185" id="R_MAR11817" name="Transport of Isobutyrylglycine into Extracellular Space" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -468209,7 +467197,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11817">
+            <rdf:Description rdf:about="#R_MAR11817">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.2.2"/>
@@ -468221,13 +467209,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02181c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02181c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02181e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02181e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11818" sboTerm="SBO:0000627" id="MAR11818" name="Exchange of Isobutyrylglycine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11818" sboTerm="SBO:0000627" id="R_MAR11818" name="Exchange of Isobutyrylglycine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -468235,7 +467223,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11818">
+            <rdf:Description rdf:about="#R_MAR11818">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_CE4969_e"/>
@@ -468246,10 +467234,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02181e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02181e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR11819" sboTerm="SBO:0000185" id="MAR11819" name="Transport of N-Acetyl-L-Cysteine into Cytosol" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11819" sboTerm="SBO:0000185" id="R_MAR11819" name="Transport of N-Acetyl-L-Cysteine into Cytosol" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -468257,7 +467245,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11819">
+            <rdf:Description rdf:about="#R_MAR11819">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/NACCYStm"/>
@@ -468268,13 +467256,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02534m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02534m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02534c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02534c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11820" sboTerm="SBO:0000185" id="MAR11820" name="Transport of N-Acetyl-L-Cysteine into Extracellular Space" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11820" sboTerm="SBO:0000185" id="R_MAR11820" name="Transport of N-Acetyl-L-Cysteine into Extracellular Space" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -468282,7 +467270,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11820">
+            <rdf:Description rdf:about="#R_MAR11820">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/NACCYSte"/>
@@ -468293,13 +467281,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02534c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02534c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02534e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02534e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11821" sboTerm="SBO:0000627" id="MAR11821" name="Exchange of N-Acetyl-L-Cysteine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11821" sboTerm="SBO:0000627" id="R_MAR11821" name="Exchange of N-Acetyl-L-Cysteine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -468307,7 +467295,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11821">
+            <rdf:Description rdf:about="#R_MAR11821">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_CE1310_e"/>
@@ -468318,10 +467306,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02534e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02534e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR11822" sboTerm="SBO:0000185" id="MAR11822" name="Transport of Trans-4-Coumarate, Mitochondrial" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11822" sboTerm="SBO:0000185" id="R_MAR11822" name="Transport of Trans-4-Coumarate, Mitochondrial" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -468329,7 +467317,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11822">
+            <rdf:Description rdf:about="#R_MAR11822">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/T4HCINNMtm"/>
@@ -468340,13 +467328,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00981m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00981m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00981c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00981c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11823" sboTerm="SBO:0000627" id="MAR11823" name="Exchange of Trans-4-Coumarate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11823" sboTerm="SBO:0000627" id="R_MAR11823" name="Exchange of Trans-4-Coumarate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -468354,7 +467342,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11823">
+            <rdf:Description rdf:about="#R_MAR11823">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_T4hcinnm_e"/>
@@ -468366,10 +467354,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00981e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00981e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR11824" sboTerm="SBO:0000185" id="MAR11824" name="Transport of 4-Hydroxybenzoate, Extracellular Space" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11824" sboTerm="SBO:0000185" id="R_MAR11824" name="Transport of 4-Hydroxybenzoate, Extracellular Space" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -468377,7 +467365,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11824">
+            <rdf:Description rdf:about="#R_MAR11824">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/4HBZte"/>
@@ -468388,13 +467376,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00995c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00995c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00995e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00995e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11825" sboTerm="SBO:0000185" id="MAR11825" name="Transport of Succinic Semialdehyde, Mitochondrial" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11825" sboTerm="SBO:0000185" id="R_MAR11825" name="Transport of Succinic Semialdehyde, Mitochondrial" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -468402,7 +467390,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11825">
+            <rdf:Description rdf:about="#R_MAR11825">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/SUCSALtm"/>
@@ -468413,13 +467401,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02942m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02942m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02942c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02942c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11826" sboTerm="SBO:0000185" id="MAR11826" name="Transport of Succinic Semialdehyde, Extracellular Space" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11826" sboTerm="SBO:0000185" id="R_MAR11826" name="Transport of Succinic Semialdehyde, Extracellular Space" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -468427,7 +467415,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11826">
+            <rdf:Description rdf:about="#R_MAR11826">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.2.2"/>
@@ -468439,13 +467427,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02942c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02942c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02942e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02942e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11827" sboTerm="SBO:0000627" id="MAR11827" name="Exchange of Succinic Semialdehyde" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11827" sboTerm="SBO:0000627" id="R_MAR11827" name="Exchange of Succinic Semialdehyde" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -468453,7 +467441,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11827">
+            <rdf:Description rdf:about="#R_MAR11827">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_sucsal_e"/>
@@ -468464,10 +467452,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02942e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02942e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR11828" sboTerm="SBO:0000185" id="MAR11828" name="Transport of 15(R)-HEPE, Endoplasmatic Reticulum, Active Transport" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11828" sboTerm="SBO:0000185" id="R_MAR11828" name="Transport of 15(R)-HEPE, Endoplasmatic Reticulum, Active Transport" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -468476,7 +467464,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11828">
+            <rdf:Description rdf:about="#R_MAR11828">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CE7081tr"/>
@@ -468487,18 +467475,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00373r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00373r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00373c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01285r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00373c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11829" sboTerm="SBO:0000185" id="MAR11829" name="Transport of 15(R)-HEPE, Extracellular Space, Active Transport" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11829" sboTerm="SBO:0000185" id="R_MAR11829" name="Transport of 15(R)-HEPE, Extracellular Space, Active Transport" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -468507,7 +467495,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11829">
+            <rdf:Description rdf:about="#R_MAR11829">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.2.2"/>
@@ -468519,18 +467507,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00373c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00373c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00373e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00373e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11830" sboTerm="SBO:0000627" id="MAR11830" name="Exchange of 15(R)-HEPE" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11830" sboTerm="SBO:0000627" id="R_MAR11830" name="Exchange of 15(R)-HEPE" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -468538,7 +467526,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11830">
+            <rdf:Description rdf:about="#R_MAR11830">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_CE7081_e"/>
@@ -468549,10 +467537,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00373e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00373e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR11831" sboTerm="SBO:0000185" id="MAR11831" name="Transport of Succinic Semialdehyde, Mitochondrial" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11831" sboTerm="SBO:0000185" id="R_MAR11831" name="Transport of Succinic Semialdehyde, Mitochondrial" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -468560,7 +467548,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11831">
+            <rdf:Description rdf:about="#R_MAR11831">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EGMEtr"/>
@@ -468571,13 +467559,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01767r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01767r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01767c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01767c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11832" sboTerm="SBO:0000185" id="MAR11832" name="Transport of Succinic Semialdehyde, Extracellular Space" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11832" sboTerm="SBO:0000185" id="R_MAR11832" name="Transport of Succinic Semialdehyde, Extracellular Space" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -468585,7 +467573,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11832">
+            <rdf:Description rdf:about="#R_MAR11832">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EGMEte"/>
@@ -468596,13 +467584,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01767c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01767c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01767e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01767e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11833" sboTerm="SBO:0000627" id="MAR11833" name="Exchange of Succinic Semialdehyde" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11833" sboTerm="SBO:0000627" id="R_MAR11833" name="Exchange of Succinic Semialdehyde" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -468610,7 +467598,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11833">
+            <rdf:Description rdf:about="#R_MAR11833">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_egme_e"/>
@@ -468621,10 +467609,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01767e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01767e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR11834" sboTerm="SBO:0000185" id="MAR11834" name="Transport of 12 Hydroxy Arachidonic Acid, Endoplasmatic Reticulum, Active Transport" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11834" sboTerm="SBO:0000185" id="R_MAR11834" name="Transport of 12 Hydroxy Arachidonic Acid, Endoplasmatic Reticulum, Active Transport" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -468633,7 +467621,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11834">
+            <rdf:Description rdf:about="#R_MAR11834">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/12HARACHDtr"/>
@@ -468644,18 +467632,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00324r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00324r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00324c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00324c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11835" sboTerm="SBO:0000185" id="MAR11835" name="Transport of 12 Hydroxy Arachidonic Acid, Extracellular Space, Active Transport" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11835" sboTerm="SBO:0000185" id="R_MAR11835" name="Transport of 12 Hydroxy Arachidonic Acid, Extracellular Space, Active Transport" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -468664,7 +467652,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11835">
+            <rdf:Description rdf:about="#R_MAR11835">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/12HARACHDte"/>
@@ -468675,18 +467663,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00324c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00324c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00324e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00324e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11836" sboTerm="SBO:0000627" id="MAR11836" name="Exchange of 12 Hydroxy Arachidonic Acid" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11836" sboTerm="SBO:0000627" id="R_MAR11836" name="Exchange of 12 Hydroxy Arachidonic Acid" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -468694,7 +467682,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11836">
+            <rdf:Description rdf:about="#R_MAR11836">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_12harachd_e"/>
@@ -468705,10 +467693,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00324e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00324e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR11837" sboTerm="SBO:0000185" id="MAR11837" name="Transport of 18 Hydroxy Arachidonic Acid, Endoplasmatic Reticulum, Active Transport" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11837" sboTerm="SBO:0000185" id="R_MAR11837" name="Transport of 18 Hydroxy Arachidonic Acid, Endoplasmatic Reticulum, Active Transport" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -468717,7 +467705,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11837">
+            <rdf:Description rdf:about="#R_MAR11837">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/18HARACHDtr"/>
@@ -468728,18 +467716,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00428r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00428r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00428c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00428c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11838" sboTerm="SBO:0000185" id="MAR11838" name="Transport of 18 Hydroxy Arachidonic Acid, Extracellular Space, Active Transport" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11838" sboTerm="SBO:0000185" id="R_MAR11838" name="Transport of 18 Hydroxy Arachidonic Acid, Extracellular Space, Active Transport" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -468748,7 +467736,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11838">
+            <rdf:Description rdf:about="#R_MAR11838">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/18HARACHDte"/>
@@ -468759,18 +467747,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00428c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00428c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00428e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00428e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11839" sboTerm="SBO:0000627" id="MAR11839" name="Exchange of 18 Hydroxy Arachidonic Acid" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11839" sboTerm="SBO:0000627" id="R_MAR11839" name="Exchange of 18 Hydroxy Arachidonic Acid" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -468778,7 +467766,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11839">
+            <rdf:Description rdf:about="#R_MAR11839">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_18harachd_e"/>
@@ -468789,10 +467777,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00428e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00428e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR11840" sboTerm="SBO:0000185" id="MAR11840" name="Transport of Squalene, Endoplasmatic Reticulum, within Chylomicron" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11840" sboTerm="SBO:0000185" id="R_MAR11840" name="Transport of Squalene, Endoplasmatic Reticulum, within Chylomicron" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -468801,7 +467789,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11840">
+            <rdf:Description rdf:about="#R_MAR11840">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/SQLter"/>
@@ -468813,13 +467801,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02933r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02933r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02933c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02933c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11841" sboTerm="SBO:0000185" id="MAR11841" name="Transport of Squalene, Extracellular Space, within Chylomicron" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11841" sboTerm="SBO:0000185" id="R_MAR11841" name="Transport of Squalene, Extracellular Space, within Chylomicron" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -468828,7 +467816,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11841">
+            <rdf:Description rdf:about="#R_MAR11841">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/SQLte"/>
@@ -468839,13 +467827,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02933c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02933c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02933e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02933e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11842" sboTerm="SBO:0000627" id="MAR11842" name="Exchange of Squalene" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11842" sboTerm="SBO:0000627" id="R_MAR11842" name="Exchange of Squalene" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -468853,7 +467841,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11842">
+            <rdf:Description rdf:about="#R_MAR11842">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_sql_e"/>
@@ -468864,10 +467852,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02933e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02933e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR11843" sboTerm="SBO:0000185" id="MAR11843" name="Transport of Ornithine, Peroxisomal" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11843" sboTerm="SBO:0000185" id="R_MAR11843" name="Transport of Ornithine, Peroxisomal" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -468876,7 +467864,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11843">
+            <rdf:Description rdf:about="#R_MAR11843">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ORN_Dtx"/>
@@ -468887,15 +467875,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01740x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01740x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01740c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01740c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039x" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11844" sboTerm="SBO:0000185" id="MAR11844" name="Transport of Ornithine, Extracellular Space" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11844" sboTerm="SBO:0000185" id="R_MAR11844" name="Transport of Ornithine, Extracellular Space" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -468904,7 +467892,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11844">
+            <rdf:Description rdf:about="#R_MAR11844">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ORN_Dte"/>
@@ -468915,15 +467903,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01740c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01740c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01740e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01740e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11845" sboTerm="SBO:0000185" id="MAR11845" name="Transport of 5-Guanidino-2-Oxopentanoic Acid, Peroxisomal" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11845" sboTerm="SBO:0000185" id="R_MAR11845" name="Transport of 5-Guanidino-2-Oxopentanoic Acid, Peroxisomal" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -468931,7 +467919,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11845">
+            <rdf:Description rdf:about="#R_MAR11845">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/5G2OXPTtx"/>
@@ -468942,13 +467930,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01101x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01101x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01101c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01101c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11846" sboTerm="SBO:0000185" id="MAR11846" name="Transport of 5-Guanidino-2-Oxopentanoic Acid, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11846" sboTerm="SBO:0000185" id="R_MAR11846" name="Transport of 5-Guanidino-2-Oxopentanoic Acid, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -468956,7 +467944,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11846">
+            <rdf:Description rdf:about="#R_MAR11846">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/5G2OXPTte"/>
@@ -468967,13 +467955,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01101c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01101c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01101e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01101e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11847" sboTerm="SBO:0000627" id="MAR11847" name="Exchange of 5-Guanidino-2-Oxopentanoic Acid" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11847" sboTerm="SBO:0000627" id="R_MAR11847" name="Exchange of 5-Guanidino-2-Oxopentanoic Acid" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -468981,7 +467969,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11847">
+            <rdf:Description rdf:about="#R_MAR11847">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_5g2oxpt_e"/>
@@ -468992,10 +467980,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01101e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01101e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR11848" sboTerm="SBO:0000627" id="MAR11848" name="Exchange of Androst-4-Ene-3, 17-Dione" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11848" sboTerm="SBO:0000627" id="R_MAR11848" name="Exchange of Androst-4-Ene-3, 17-Dione" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -469003,7 +467991,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11848">
+            <rdf:Description rdf:about="#R_MAR11848">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_andrstndn_e"/>
@@ -469014,10 +468002,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00971e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00971e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR11849" sboTerm="SBO:0000185" id="MAR11849" name="Transport of 3Beta-Hydroxyandrost-5-En-17-One" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11849" sboTerm="SBO:0000185" id="R_MAR11849" name="Transport of 3Beta-Hydroxyandrost-5-En-17-One" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -469026,7 +468014,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11849">
+            <rdf:Description rdf:about="#R_MAR11849">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/DHEAte"/>
@@ -469037,18 +468025,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01660c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01660c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01660e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01660e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11850" sboTerm="SBO:0000627" id="MAR11850" name="Exchange of 3Beta-Hydroxyandrost-5-En-17-One" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11850" sboTerm="SBO:0000627" id="R_MAR11850" name="Exchange of 3Beta-Hydroxyandrost-5-En-17-One" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -469056,7 +468044,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11850">
+            <rdf:Description rdf:about="#R_MAR11850">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_dhea_e"/>
@@ -469067,10 +468055,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01660e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01660e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR11851" sboTerm="SBO:0000185" id="MAR11851" name="Transport of 16Alpha-Hydroxydehydroepiandrosterone, Endoplasmatic Reticulum" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11851" sboTerm="SBO:0000185" id="R_MAR11851" name="Transport of 16Alpha-Hydroxydehydroepiandrosterone, Endoplasmatic Reticulum" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -469079,7 +468067,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11851">
+            <rdf:Description rdf:about="#R_MAR11851">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EANDRSTRNtr"/>
@@ -469090,18 +468078,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00399r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00399r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00399c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00399c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11852" sboTerm="SBO:0000627" id="MAR11852" name="Exchange of 16Alpha-Hydroxydehydroepiandrosterone" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11852" sboTerm="SBO:0000627" id="R_MAR11852" name="Exchange of 16Alpha-Hydroxydehydroepiandrosterone" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -469109,7 +468097,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11852">
+            <rdf:Description rdf:about="#R_MAR11852">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_eandrstrn_e"/>
@@ -469120,10 +468108,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00399e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00399e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR11853" sboTerm="SBO:0000185" id="MAR11853" name="Transport of 3Alpha-Hydroxy-5Beta-Androstan-17-One, Endoplasmatic Reticulum" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11853" sboTerm="SBO:0000185" id="R_MAR11853" name="Transport of 3Alpha-Hydroxy-5Beta-Androstan-17-One, Endoplasmatic Reticulum" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -469132,7 +468120,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11853">
+            <rdf:Description rdf:about="#R_MAR11853">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/AHANDROSTANtr"/>
@@ -469143,18 +468131,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01800r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01800r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01800c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01800c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11854" sboTerm="SBO:0000185" id="MAR11854" name="Transport of 5Alpha-Androstane-3, 17-Dione, Endoplasmatic Reticulum" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11854" sboTerm="SBO:0000185" id="R_MAR11854" name="Transport of 5Alpha-Androstane-3, 17-Dione, Endoplasmatic Reticulum" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -469163,7 +468151,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11854">
+            <rdf:Description rdf:about="#R_MAR11854">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ANDRSTANDRtr"/>
@@ -469174,18 +468162,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01064r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01064r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01064c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01064c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11855" sboTerm="SBO:0000627" id="MAR11855" name="Exchange of 5Alpha-Androstane-3, 17-Dione" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11855" sboTerm="SBO:0000627" id="R_MAR11855" name="Exchange of 5Alpha-Androstane-3, 17-Dione" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -469193,7 +468181,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11855">
+            <rdf:Description rdf:about="#R_MAR11855">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_andrstandn_e"/>
@@ -469204,10 +468192,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01064e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01064e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR11856" sboTerm="SBO:0000627" id="MAR11856" name="Exchange of 5Alpha-Androstane-3Alpha, 17Beta-Diol" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11856" sboTerm="SBO:0000627" id="R_MAR11856" name="Exchange of 5Alpha-Androstane-3Alpha, 17Beta-Diol" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -469215,7 +468203,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11856">
+            <rdf:Description rdf:about="#R_MAR11856">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_CE2209_e"/>
@@ -469226,10 +468214,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01065e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01065e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR11857" sboTerm="SBO:0000185" id="MAR11857" name="Transport of Estrone, Extracellular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11857" sboTerm="SBO:0000185" id="R_MAR11857" name="Transport of Estrone, Extracellular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -469238,7 +468226,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11857">
+            <rdf:Description rdf:about="#R_MAR11857">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ESTRONEte"/>
@@ -469249,18 +468237,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01790c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01790c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01790e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01790e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11858" sboTerm="SBO:0000627" id="MAR11858" name="Exchange of Estrone" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11858" sboTerm="SBO:0000627" id="R_MAR11858" name="Exchange of Estrone" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -469268,7 +468256,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11858">
+            <rdf:Description rdf:about="#R_MAR11858">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_estrone_e"/>
@@ -469279,10 +468267,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01790e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01790e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR11859" sboTerm="SBO:0000185" id="MAR11859" name="Transport of 2-Hydroxyestrone, Extracellular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11859" sboTerm="SBO:0000185" id="R_MAR11859" name="Transport of 2-Hydroxyestrone, Extracellular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -469291,7 +468279,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11859">
+            <rdf:Description rdf:about="#R_MAR11859">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/C05298te"/>
@@ -469302,18 +468290,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00650c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00650c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00650e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00650e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11860" sboTerm="SBO:0000627" id="MAR11860" name="Exchange of 2-Hydroxyestrone" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11860" sboTerm="SBO:0000627" id="R_MAR11860" name="Exchange of 2-Hydroxyestrone" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -469321,7 +468309,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11860">
+            <rdf:Description rdf:about="#R_MAR11860">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_C05298_e"/>
@@ -469332,10 +468320,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00650e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00650e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR11861" sboTerm="SBO:0000627" id="MAR11861" name="Exchange of 2-Hydroxyestradiol-17Beta" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11861" sboTerm="SBO:0000627" id="R_MAR11861" name="Exchange of 2-Hydroxyestradiol-17Beta" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -469343,7 +468331,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11861">
+            <rdf:Description rdf:about="#R_MAR11861">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_C05301_e"/>
@@ -469354,10 +468342,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00649e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00649e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR11862" sboTerm="SBO:0000627" id="MAR11862" name="Exchange of 2-Methoxyestrone" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11862" sboTerm="SBO:0000627" id="R_MAR11862" name="Exchange of 2-Methoxyestrone" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -469365,7 +468353,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11862">
+            <rdf:Description rdf:about="#R_MAR11862">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_C05299_e"/>
@@ -469376,10 +468364,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00660e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00660e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR11863" sboTerm="SBO:0000627" id="MAR11863" name="Exchange of 2-Methoxyestradiol-17Beta" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11863" sboTerm="SBO:0000627" id="R_MAR11863" name="Exchange of 2-Methoxyestradiol-17Beta" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -469387,7 +468375,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11863">
+            <rdf:Description rdf:about="#R_MAR11863">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_C05302_e"/>
@@ -469398,10 +468386,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00659e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00659e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR11864" sboTerm="SBO:0000627" id="MAR11864" name="Exchange of 21-Hydroxyallopregnanolone" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11864" sboTerm="SBO:0000627" id="R_MAR11864" name="Exchange of 21-Hydroxyallopregnanolone" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -469409,7 +468397,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11864">
+            <rdf:Description rdf:about="#R_MAR11864">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_CE5072_e"/>
@@ -469420,10 +468408,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00604e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00604e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR11865" sboTerm="SBO:0000627" id="MAR11865" name="Exchange of 11-Deoxycortisol" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11865" sboTerm="SBO:0000627" id="R_MAR11865" name="Exchange of 11-Deoxycortisol" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -469431,7 +468419,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11865">
+            <rdf:Description rdf:about="#R_MAR11865">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_11docrtsl_e"/>
@@ -469442,10 +468430,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00295e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00295e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR11866" sboTerm="SBO:0000627" id="MAR11866" name="Exchange of 11-Deoxycorticosterone" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11866" sboTerm="SBO:0000627" id="R_MAR11866" name="Exchange of 11-Deoxycorticosterone" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -469453,7 +468441,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11866">
+            <rdf:Description rdf:about="#R_MAR11866">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_11docrtstrn_e"/>
@@ -469464,10 +468452,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00294e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00294e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR11867" sboTerm="SBO:0000627" id="MAR11867" name="Exchange of Pregnenolone" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11867" sboTerm="SBO:0000627" id="R_MAR11867" name="Exchange of Pregnenolone" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -469475,7 +468463,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11867">
+            <rdf:Description rdf:about="#R_MAR11867">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_prgnlone_e"/>
@@ -469486,10 +468474,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02763e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02763e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR11868" sboTerm="SBO:0000627" id="MAR11868" name="Exchange of Allopregnanolone" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11868" sboTerm="SBO:0000627" id="R_MAR11868" name="Exchange of Allopregnanolone" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -469497,7 +468485,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11868">
+            <rdf:Description rdf:about="#R_MAR11868">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_CE2211_e"/>
@@ -469508,10 +468496,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01314e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01314e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR11869" sboTerm="SBO:0000627" id="MAR11869" name="Exchange of 17Alpha-Hydroxyprogesterone" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11869" sboTerm="SBO:0000627" id="R_MAR11869" name="Exchange of 17Alpha-Hydroxyprogesterone" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -469519,7 +468507,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11869">
+            <rdf:Description rdf:about="#R_MAR11869">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_17ahprgstrn_e"/>
@@ -469530,10 +468518,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00409e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00409e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR11870" sboTerm="SBO:0000627" id="MAR11870" name="Exchange of 17Alpha-Hydroxypregnenolone" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11870" sboTerm="SBO:0000627" id="R_MAR11870" name="Exchange of 17Alpha-Hydroxypregnenolone" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -469541,7 +468529,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11870">
+            <rdf:Description rdf:about="#R_MAR11870">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_17ahprgnlone_e"/>
@@ -469552,10 +468540,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00408e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00408e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR11871" sboTerm="SBO:0000627" id="MAR11871" name="Exchange of 5Alpha-Pregnane-3, 20-Dione" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11871" sboTerm="SBO:0000627" id="R_MAR11871" name="Exchange of 5Alpha-Pregnane-3, 20-Dione" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -469563,7 +468551,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11871">
+            <rdf:Description rdf:about="#R_MAR11871">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_C03681_e"/>
@@ -469574,10 +468562,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01072e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01072e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR11872" sboTerm="SBO:0000185" id="MAR11872" name="Transport of Cholesterol-Ester-Palm, Endoplasmatic Reticulum, within Lipoproteins" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11872" sboTerm="SBO:0000185" id="R_MAR11872" name="Transport of Cholesterol-Ester-Palm, Endoplasmatic Reticulum, within Lipoproteins" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -469586,7 +468574,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11872">
+            <rdf:Description rdf:about="#R_MAR11872">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/HC02020tr"/>
@@ -469597,13 +468585,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01504r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01504r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01504c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01504c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11873" sboTerm="SBO:0000185" id="MAR11873" name="Transport of Cholesterol-Ester-Palm, Extracellular Space, within Lipoproteins" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11873" sboTerm="SBO:0000185" id="R_MAR11873" name="Transport of Cholesterol-Ester-Palm, Extracellular Space, within Lipoproteins" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -469612,7 +468600,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11873">
+            <rdf:Description rdf:about="#R_MAR11873">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/HC02020te"/>
@@ -469623,13 +468611,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01504c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01504c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01504e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01504e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11874" sboTerm="SBO:0000627" id="MAR11874" name="Exchange of Cholesterol-Ester-Palm" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11874" sboTerm="SBO:0000627" id="R_MAR11874" name="Exchange of Cholesterol-Ester-Palm" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -469637,7 +468625,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11874">
+            <rdf:Description rdf:about="#R_MAR11874">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_HC02020_e"/>
@@ -469648,10 +468636,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01504e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01504e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR11875" sboTerm="SBO:0000627" id="MAR11875" name="Exchange of Pregnenolone Sulfate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11875" sboTerm="SBO:0000627" id="R_MAR11875" name="Exchange of Pregnenolone Sulfate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -469659,7 +468647,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11875">
+            <rdf:Description rdf:about="#R_MAR11875">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_prgnlones_e"/>
@@ -469670,10 +468658,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02762e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02762e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR11876" sboTerm="SBO:0000627" id="MAR11876" name="Exchange of 17Alpha-Hydroxypregnenolone Sulfate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11876" sboTerm="SBO:0000627" id="R_MAR11876" name="Exchange of 17Alpha-Hydroxypregnenolone Sulfate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -469681,7 +468669,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11876">
+            <rdf:Description rdf:about="#R_MAR11876">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_CE1352_e"/>
@@ -469692,10 +468680,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00407e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00407e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR11877" sboTerm="SBO:0000185" id="MAR11877" name="Transport of (24S)-24-Hydroxycholesterol, Endoplasmatic Reticulum, within Lipoproteins" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11877" sboTerm="SBO:0000185" id="R_MAR11877" name="Transport of (24S)-24-Hydroxycholesterol, Endoplasmatic Reticulum, within Lipoproteins" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -469704,7 +468692,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11877">
+            <rdf:Description rdf:about="#R_MAR11877">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/XOL24OHtr"/>
@@ -469715,13 +468703,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00610r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00610r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00610c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00610c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11878" sboTerm="SBO:0000185" id="MAR11878" name="Transport of (24S)-24-Hydroxycholesterol, Extracellular Space, within Lipoproteins" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11878" sboTerm="SBO:0000185" id="R_MAR11878" name="Transport of (24S)-24-Hydroxycholesterol, Extracellular Space, within Lipoproteins" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -469730,7 +468718,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11878">
+            <rdf:Description rdf:about="#R_MAR11878">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/XOL24OHte"/>
@@ -469741,13 +468729,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00610c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00610c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00610e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00610e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11879" sboTerm="SBO:0000627" id="MAR11879" name="Exchange of (24S)-24-Hydroxycholesterol" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11879" sboTerm="SBO:0000627" id="R_MAR11879" name="Exchange of (24S)-24-Hydroxycholesterol" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -469755,7 +468743,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11879">
+            <rdf:Description rdf:about="#R_MAR11879">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_xol24oh_e"/>
@@ -469766,10 +468754,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00610e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00610e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR11880" sboTerm="SBO:0000185" id="MAR11880" name="Transport of 26-Hydroxycholesterol, Extracellular Space, within Lipoproteins" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11880" sboTerm="SBO:0000185" id="R_MAR11880" name="Transport of 26-Hydroxycholesterol, Extracellular Space, within Lipoproteins" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -469778,7 +468766,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11880">
+            <rdf:Description rdf:about="#R_MAR11880">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/XOL27OHte"/>
@@ -469789,13 +468777,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00623c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00623c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00623e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00623e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11881" sboTerm="SBO:0000627" id="MAR11881" name="Exchange of 26-Hydroxycholesterol" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11881" sboTerm="SBO:0000627" id="R_MAR11881" name="Exchange of 26-Hydroxycholesterol" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -469803,7 +468791,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11881">
+            <rdf:Description rdf:about="#R_MAR11881">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_xol27oh_e"/>
@@ -469814,10 +468802,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00623e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00623e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR11882" sboTerm="SBO:0000185" id="MAR11882" name="Transport of 25-Hydroxycholesterol, Endoplasmatic Reticulum, within Lipoproteins" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11882" sboTerm="SBO:0000185" id="R_MAR11882" name="Transport of 25-Hydroxycholesterol, Endoplasmatic Reticulum, within Lipoproteins" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -469826,7 +468814,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11882">
+            <rdf:Description rdf:about="#R_MAR11882">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/XOL25OHtr"/>
@@ -469837,13 +468825,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00619r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00619r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00619c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00619c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11883" sboTerm="SBO:0000185" id="MAR11883" name="Transport of 25-Hydroxycholesterol, Extracellular Space, within Lipoproteins" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11883" sboTerm="SBO:0000185" id="R_MAR11883" name="Transport of 25-Hydroxycholesterol, Extracellular Space, within Lipoproteins" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -469852,7 +468840,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11883">
+            <rdf:Description rdf:about="#R_MAR11883">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/XOL25OHte"/>
@@ -469863,13 +468851,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00619c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00619c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00619e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00619e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11884" sboTerm="SBO:0000627" id="MAR11884" name="Exchange of 25-Hydroxycholesterol" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11884" sboTerm="SBO:0000627" id="R_MAR11884" name="Exchange of 25-Hydroxycholesterol" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -469877,7 +468865,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11884">
+            <rdf:Description rdf:about="#R_MAR11884">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_xol25oh_e"/>
@@ -469888,10 +468876,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00619e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00619e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR11885" sboTerm="SBO:0000185" id="MAR11885" name="Transport of Desmosterol, Endoplasmatic Reticulum, within Lipoproteins" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11885" sboTerm="SBO:0000185" id="R_MAR11885" name="Transport of Desmosterol, Endoplasmatic Reticulum, within Lipoproteins" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -469900,7 +468888,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11885">
+            <rdf:Description rdf:about="#R_MAR11885">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/DSMSTEROLtr"/>
@@ -469911,13 +468899,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01675r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01675r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01675c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01675c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11886" sboTerm="SBO:0000185" id="MAR11886" name="Transport of Desmosterol, Extracellular Space, within Lipoproteins" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11886" sboTerm="SBO:0000185" id="R_MAR11886" name="Transport of Desmosterol, Extracellular Space, within Lipoproteins" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -469926,7 +468914,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11886">
+            <rdf:Description rdf:about="#R_MAR11886">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/DSMSTEROLte"/>
@@ -469937,13 +468925,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01675c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01675c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01675e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01675e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11887" sboTerm="SBO:0000627" id="MAR11887" name="Exchange of Desmosterol" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11887" sboTerm="SBO:0000627" id="R_MAR11887" name="Exchange of Desmosterol" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -469951,7 +468939,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11887">
+            <rdf:Description rdf:about="#R_MAR11887">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_dsmsterol_e"/>
@@ -469962,10 +468950,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01675e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01675e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR11888" sboTerm="SBO:0000185" id="MAR11888" name="Transport of Cholesterol Sulfate, Extracellular Space, within Lipoproteins" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11888" sboTerm="SBO:0000185" id="R_MAR11888" name="Transport of Cholesterol Sulfate, Extracellular Space, within Lipoproteins" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -469974,7 +468962,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11888">
+            <rdf:Description rdf:about="#R_MAR11888">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CHSTEROLSte"/>
@@ -469985,13 +468973,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01512c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01512c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01512e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01512e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11889" sboTerm="SBO:0000627" id="MAR11889" name="Exchange of Cholesterol Sulfate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11889" sboTerm="SBO:0000627" id="R_MAR11889" name="Exchange of Cholesterol Sulfate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -469999,7 +468987,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11889">
+            <rdf:Description rdf:about="#R_MAR11889">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_chsterols_e"/>
@@ -470010,10 +468998,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01512e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01512e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR11890" sboTerm="SBO:0000185" id="MAR11890" name="Transport of 3-Iodo-L-Tyrosine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11890" sboTerm="SBO:0000185" id="R_MAR11890" name="Transport of 3-Iodo-L-Tyrosine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -470021,7 +469009,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11890">
+            <rdf:Description rdf:about="#R_MAR11890">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/3ITYR_Lte"/>
@@ -470032,15 +469020,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00807c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00807c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00807e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00807e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11891" sboTerm="SBO:0000627" id="MAR11891" name="Exchange of 3-Iodo-L-Tyrosine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11891" sboTerm="SBO:0000627" id="R_MAR11891" name="Exchange of 3-Iodo-L-Tyrosine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -470048,7 +469036,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11891">
+            <rdf:Description rdf:about="#R_MAR11891">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_3ityr__L_e"/>
@@ -470059,10 +469047,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00807e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00807e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR11892" sboTerm="SBO:0000185" id="MAR11892" name="Transport of 3, 5-Diiodo-L-Tyrosine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11892" sboTerm="SBO:0000185" id="R_MAR11892" name="Transport of 3, 5-Diiodo-L-Tyrosine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -470070,7 +469058,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11892">
+            <rdf:Description rdf:about="#R_MAR11892">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/35DIODTYRte"/>
@@ -470081,15 +469069,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00739c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00739c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00739e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00739e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11893" sboTerm="SBO:0000627" id="MAR11893" name="Exchange of 3, 5-Diiodo-L-Tyrosine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11893" sboTerm="SBO:0000627" id="R_MAR11893" name="Exchange of 3, 5-Diiodo-L-Tyrosine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -470097,7 +469085,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11893">
+            <rdf:Description rdf:about="#R_MAR11893">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_35diotyr_e"/>
@@ -470108,10 +469096,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00739e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00739e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR11894" sboTerm="SBO:0000185" id="MAR11894" name="Transport of 13-Cis-Retinoate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11894" sboTerm="SBO:0000185" id="R_MAR11894" name="Transport of 13-Cis-Retinoate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -470119,7 +469107,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11894">
+            <rdf:Description rdf:about="#R_MAR11894">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/13_CIS_RETNte"/>
@@ -470130,13 +469118,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00350c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00350c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00350e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00350e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11895" sboTerm="SBO:0000627" id="MAR11895" name="Exchange of 13-Cis-Retinoate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11895" sboTerm="SBO:0000627" id="R_MAR11895" name="Exchange of 13-Cis-Retinoate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -470144,7 +469132,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11895">
+            <rdf:Description rdf:about="#R_MAR11895">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_13_cis_retn_e"/>
@@ -470155,10 +469143,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00350e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00350e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR11896" sboTerm="SBO:0000185" id="MAR11896" name="Transport of 9-Cis-Retinoate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11896" sboTerm="SBO:0000185" id="R_MAR11896" name="Transport of 9-Cis-Retinoate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -470166,7 +469154,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11896">
+            <rdf:Description rdf:about="#R_MAR11896">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CE1617te"/>
@@ -470177,13 +469165,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01231c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01231c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01231e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01231e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11897" sboTerm="SBO:0000627" id="MAR11897" name="Exchange of 9-Cis-Retinoate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11897" sboTerm="SBO:0000627" id="R_MAR11897" name="Exchange of 9-Cis-Retinoate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -470191,7 +469179,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11897">
+            <rdf:Description rdf:about="#R_MAR11897">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_CE1617_e"/>
@@ -470202,10 +469190,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01231e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01231e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR11898" sboTerm="SBO:0000185" id="MAR11898" name="Secretion of VLDL" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11898" sboTerm="SBO:0000185" id="R_MAR11898" name="Secretion of VLDL" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -470215,7 +469203,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11898">
+            <rdf:Description rdf:about="#R_MAR11898">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/VLDL_HSSEC"/>
@@ -470225,13 +469213,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM04074c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04074c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM04074e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04074e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11899" sboTerm="SBO:0000185" id="MAR11899" name="Secretion of Chylomicron" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11899" sboTerm="SBO:0000185" id="R_MAR11899" name="Secretion of Chylomicron" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -470241,7 +469229,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11899">
+            <rdf:Description rdf:about="#R_MAR11899">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/CHYLO_HSSEC"/>
@@ -470251,13 +469239,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03511c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03511c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03511e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03511e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11900" sboTerm="SBO:0000185" id="MAR11900" name="2, 5-Dihydroxybenzoate Diffusion, Cytosol" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11900" sboTerm="SBO:0000185" id="R_MAR11900" name="2, 5-Dihydroxybenzoate Diffusion, Cytosol" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -470265,7 +469253,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11900">
+            <rdf:Description rdf:about="#R_MAR11900">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/HC00460te"/>
@@ -470276,13 +469264,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00576c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00576c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00576e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00576e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11901" sboTerm="SBO:0000627" id="MAR11901" name="Exchange of 2,5-Dihydroxybenzoate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11901" sboTerm="SBO:0000627" id="R_MAR11901" name="Exchange of 2,5-Dihydroxybenzoate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -470290,7 +469278,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11901">
+            <rdf:Description rdf:about="#R_MAR11901">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_HC00460_e"/>
@@ -470301,10 +469289,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00576e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00576e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR11902" sboTerm="SBO:0000627" id="MAR11902" name="Exchange of 3,4-Dihydroxymandelate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11902" sboTerm="SBO:0000627" id="R_MAR11902" name="Exchange of 3,4-Dihydroxymandelate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -470312,7 +469300,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11902">
+            <rdf:Description rdf:about="#R_MAR11902">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_34dhoxmand_e"/>
@@ -470323,10 +469311,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00727e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00727e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR11903" sboTerm="SBO:0000185" id="MAR11903" name="Formyl-N-Acetyl-5-Methoxykynurenamine Diffusion, Cytosol" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11903" sboTerm="SBO:0000185" id="R_MAR11903" name="Formyl-N-Acetyl-5-Methoxykynurenamine Diffusion, Cytosol" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -470334,7 +469322,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11903">
+            <rdf:Description rdf:about="#R_MAR11903">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FNA5MOXAMte"/>
@@ -470345,13 +469333,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01839c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01839c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01839e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01839e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11904" sboTerm="SBO:0000627" id="MAR11904" name="Exchange of Formyl-N-Acetyl-5-Methoxykynurenamine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11904" sboTerm="SBO:0000627" id="R_MAR11904" name="Exchange of Formyl-N-Acetyl-5-Methoxykynurenamine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -470359,7 +469347,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11904">
+            <rdf:Description rdf:about="#R_MAR11904">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_fna5moxam_e"/>
@@ -470370,10 +469358,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01839e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01839e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR11905" sboTerm="SBO:0000185" id="MAR11905" name="Peroxynitrite Diffusion, Cytosol" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11905" sboTerm="SBO:0000185" id="R_MAR11905" name="Peroxynitrite Diffusion, Cytosol" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -470382,7 +469370,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11905">
+            <rdf:Description rdf:about="#R_MAR11905">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CE5643te"/>
@@ -470393,13 +469381,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02714c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02714c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02714e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02714e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11906" sboTerm="SBO:0000627" id="MAR11906" name="Exchange of Peroxynitrite" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11906" sboTerm="SBO:0000627" id="R_MAR11906" name="Exchange of Peroxynitrite" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -470407,7 +469395,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11906">
+            <rdf:Description rdf:about="#R_MAR11906">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_CE5643_e"/>
@@ -470418,10 +469406,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02714e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02714e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR11907" sboTerm="SBO:0000627" id="MAR11907" name="Exchange of 18R-Hydroxy-5Z,8Z,11Z,14Z,16E-Eicosapentaenoic Acid" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11907" sboTerm="SBO:0000627" id="R_MAR11907" name="Exchange of 18R-Hydroxy-5Z,8Z,11Z,14Z,16E-Eicosapentaenoic Acid" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -470429,7 +469417,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11907">
+            <rdf:Description rdf:about="#R_MAR11907">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_CE7090_e"/>
@@ -470440,10 +469428,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00028e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00028e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR11908" sboTerm="SBO:0000627" id="MAR11908" name="Exchange of (+-)-5-Hydroxy-6E,8Z,11Z,14Z,17Z-Eicosapentaenoic Acid" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11908" sboTerm="SBO:0000627" id="R_MAR11908" name="Exchange of (+-)-5-Hydroxy-6E,8Z,11Z,14Z,17Z-Eicosapentaenoic Acid" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -470451,7 +469439,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11908">
+            <rdf:Description rdf:about="#R_MAR11908">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_CE7085_e"/>
@@ -470462,10 +469450,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01039e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR11909" sboTerm="SBO:0000627" id="MAR11909" name="Exchange of 5,15-Dihydroxyeicosatetraenoic Acid" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11909" sboTerm="SBO:0000627" id="R_MAR11909" name="Exchange of 5,15-Dihydroxyeicosatetraenoic Acid" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -470473,7 +469461,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11909">
+            <rdf:Description rdf:about="#R_MAR11909">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_CE7096_e"/>
@@ -470484,10 +469472,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01050e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01050e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR11910" sboTerm="SBO:0000627" id="MAR11910" name="Exchange of 15-Deoxy-Prostaglandin J2" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11910" sboTerm="SBO:0000627" id="R_MAR11910" name="Exchange of 15-Deoxy-Prostaglandin J2" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -470495,7 +469483,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11910">
+            <rdf:Description rdf:about="#R_MAR11910">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_CE4877_e"/>
@@ -470506,10 +469494,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00385e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00385e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR11911" sboTerm="SBO:0000627" id="MAR11911" name="Exchange of 11-Dehydrothromboxane B2" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11911" sboTerm="SBO:0000627" id="R_MAR11911" name="Exchange of 11-Dehydrothromboxane B2" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -470517,7 +469505,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11911">
+            <rdf:Description rdf:about="#R_MAR11911">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_CE1447_e"/>
@@ -470528,10 +469516,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00293e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00293e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR11912" sboTerm="SBO:0000627" id="MAR11912" name="Exchange of 4-Hydroxy-2-Nonenal" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11912" sboTerm="SBO:0000627" id="R_MAR11912" name="Exchange of 4-Hydroxy-2-Nonenal" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -470539,7 +469527,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11912">
+            <rdf:Description rdf:about="#R_MAR11912">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_CE2006_e"/>
@@ -470550,10 +469538,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00988e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00988e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR11913" sboTerm="SBO:0000185" id="MAR11913" name="Transport of HomocysteineThiolactone" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11913" sboTerm="SBO:0000185" id="R_MAR11913" name="Transport of HomocysteineThiolactone" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -470562,7 +469550,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11913">
+            <rdf:Description rdf:about="#R_MAR11913">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CE1401te"/>
@@ -470573,13 +469561,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02134c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02134c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02134e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02134e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11914" sboTerm="SBO:0000627" id="MAR11914" name="Exchange of Homocysteine Thiolactone" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11914" sboTerm="SBO:0000627" id="R_MAR11914" name="Exchange of Homocysteine Thiolactone" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -470587,7 +469575,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11914">
+            <rdf:Description rdf:about="#R_MAR11914">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_CE1401_e"/>
@@ -470598,10 +469586,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02134e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02134e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR11915" sboTerm="SBO:0000185" id="MAR11915" name="Transport (ATP-Dependent) into Extracellular Space" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11915" sboTerm="SBO:0000185" id="R_MAR11915" name="Transport (ATP-Dependent) into Extracellular Space" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -470610,7 +469598,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11915">
+            <rdf:Description rdf:about="#R_MAR11915">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GLUCYSte"/>
@@ -470621,18 +469609,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01927c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01927c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01927e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01927e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11916" sboTerm="SBO:0000627" id="MAR11916" name="Exchange of Gamma-L-Glutamyl-L-Cysteine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11916" sboTerm="SBO:0000627" id="R_MAR11916" name="Exchange of Gamma-L-Glutamyl-L-Cysteine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -470640,7 +469628,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11916">
+            <rdf:Description rdf:about="#R_MAR11916">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_glucys_e"/>
@@ -470651,10 +469639,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01927e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01927e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR11917" sboTerm="SBO:0000627" id="MAR11917" name="Exchange of N(8)-Acetylspermidine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11917" sboTerm="SBO:0000627" id="R_MAR11917" name="Exchange of N(8)-Acetylspermidine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -470662,7 +469650,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11917">
+            <rdf:Description rdf:about="#R_MAR11917">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_n8aspmd_e"/>
@@ -470673,10 +469661,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02518e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02518e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR11918" sboTerm="SBO:0000627" id="MAR11918" name="Exchange of 5-Methoxytryptophol" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11918" sboTerm="SBO:0000627" id="R_MAR11918" name="Exchange of 5-Methoxytryptophol" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -470684,7 +469672,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11918">
+            <rdf:Description rdf:about="#R_MAR11918">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_CE6205_e"/>
@@ -470695,10 +469683,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01113e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01113e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR11919" sboTerm="SBO:0000185" id="MAR11919" name="Melatonin Diffusion, Cytosol" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11919" sboTerm="SBO:0000185" id="R_MAR11919" name="Melatonin Diffusion, Cytosol" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -470707,7 +469695,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11919">
+            <rdf:Description rdf:about="#R_MAR11919">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/MELATNte"/>
@@ -470718,13 +469706,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02460c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02460c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02460e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02460e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11920" sboTerm="SBO:0000627" id="MAR11920" name="Exchange of Melatonine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11920" sboTerm="SBO:0000627" id="R_MAR11920" name="Exchange of Melatonine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -470732,7 +469720,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11920">
+            <rdf:Description rdf:about="#R_MAR11920">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_melatn_e"/>
@@ -470743,10 +469731,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02460e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02460e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR11921" sboTerm="SBO:0000185" id="MAR11921" name="6-Hydroxymelatonin Diffusion, Cytosol" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11921" sboTerm="SBO:0000185" id="R_MAR11921" name="6-Hydroxymelatonin Diffusion, Cytosol" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -470754,7 +469742,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11921">
+            <rdf:Description rdf:about="#R_MAR11921">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/6HOXMELATNte"/>
@@ -470765,13 +469753,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01161c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01161c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01161e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01161e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11922" sboTerm="SBO:0000627" id="MAR11922" name="Exchange of 6-Hydroxymelatonin" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11922" sboTerm="SBO:0000627" id="R_MAR11922" name="Exchange of 6-Hydroxymelatonin" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -470779,7 +469767,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11922">
+            <rdf:Description rdf:about="#R_MAR11922">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_6hoxmelatn_e"/>
@@ -470790,10 +469778,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01161e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01161e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR11923" sboTerm="SBO:0000627" id="MAR11923" name="Exchange of Tryptamine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11923" sboTerm="SBO:0000627" id="R_MAR11923" name="Exchange of Tryptamine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -470801,7 +469789,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11923">
+            <rdf:Description rdf:about="#R_MAR11923">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_trypta_e"/>
@@ -470812,10 +469800,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03088e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03088e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR11924" sboTerm="SBO:0000185" id="MAR11924" name="Assumed Passive Diffusion into Extracellular Space" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11924" sboTerm="SBO:0000185" id="R_MAR11924" name="Assumed Passive Diffusion into Extracellular Space" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -470823,7 +469811,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11924">
+            <rdf:Description rdf:about="#R_MAR11924">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/C10164te"/>
@@ -470834,13 +469822,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02752c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02752c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02752e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02752e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11925" sboTerm="SBO:0000627" id="MAR11925" name="Exchange of Picolinic Acid" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11925" sboTerm="SBO:0000627" id="R_MAR11925" name="Exchange of Picolinic Acid" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -470848,7 +469836,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11925">
+            <rdf:Description rdf:about="#R_MAR11925">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_C10164_e"/>
@@ -470859,10 +469847,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02752e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02752e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR11926" sboTerm="SBO:0000627" id="MAR11926" name="Exchange of N-Methylsalsolinol" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11926" sboTerm="SBO:0000627" id="R_MAR11926" name="Exchange of N-Methylsalsolinol" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -470870,7 +469858,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11926">
+            <rdf:Description rdf:about="#R_MAR11926">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_CE4890_e"/>
@@ -470881,10 +469869,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02603e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02603e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR11927" sboTerm="SBO:0000627" id="MAR11927" name="Exchange of (-)-Salsolinol" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11927" sboTerm="SBO:0000627" id="R_MAR11927" name="Exchange of (-)-Salsolinol" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -470892,7 +469880,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11927">
+            <rdf:Description rdf:about="#R_MAR11927">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_C09642_e"/>
@@ -470903,10 +469891,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02875e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02875e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR11928" sboTerm="SBO:0000185" id="MAR11928" name="Assumed Passive Diffusion into Extracellular Space" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11928" sboTerm="SBO:0000185" id="R_MAR11928" name="Assumed Passive Diffusion into Extracellular Space" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -470914,7 +469902,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11928">
+            <rdf:Description rdf:about="#R_MAR11928">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/C05767te"/>
@@ -470925,13 +469913,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03125c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03125c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03125e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03125e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11929" sboTerm="SBO:0000627" id="MAR11929" name="Exchange of Uroporphyrin I" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11929" sboTerm="SBO:0000627" id="R_MAR11929" name="Exchange of Uroporphyrin I" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -470939,7 +469927,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11929">
+            <rdf:Description rdf:about="#R_MAR11929">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_C05767_e"/>
@@ -470950,10 +469938,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03125e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03125e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR11930" sboTerm="SBO:0000627" id="MAR11930" name="Exchange of N(Tele)-Methylhistaminium" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11930" sboTerm="SBO:0000627" id="R_MAR11930" name="Exchange of N(Tele)-Methylhistaminium" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -470961,7 +469949,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11930">
+            <rdf:Description rdf:about="#R_MAR11930">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_mhista_e"/>
@@ -470972,10 +469960,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02601e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02601e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR11931" sboTerm="SBO:0000185" id="MAR11931" name="Assumed Passive Diffusion into Extracellular Space" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11931" sboTerm="SBO:0000185" id="R_MAR11931" name="Assumed Passive Diffusion into Extracellular Space" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -470983,7 +469971,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11931">
+            <rdf:Description rdf:about="#R_MAR11931">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PPBNGte"/>
@@ -470994,13 +469982,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02756c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02756c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02756e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02756e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11932" sboTerm="SBO:0000627" id="MAR11932" name="Exchange of Porphobilinogen" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11932" sboTerm="SBO:0000627" id="R_MAR11932" name="Exchange of Porphobilinogen" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -471008,7 +469996,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11932">
+            <rdf:Description rdf:about="#R_MAR11932">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_ppbng_e"/>
@@ -471019,10 +470007,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02756e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02756e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR11933" sboTerm="SBO:0000627" id="MAR11933" name="Exchange of Trimethylenediaminium" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11933" sboTerm="SBO:0000627" id="R_MAR11933" name="Exchange of Trimethylenediaminium" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -471030,7 +470018,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11933">
+            <rdf:Description rdf:about="#R_MAR11933">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_13dampp_e"/>
@@ -471041,10 +470029,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00248e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00248e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR11934" sboTerm="SBO:0000627" id="MAR11934" name="Exchange of Methylammonium" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11934" sboTerm="SBO:0000627" id="R_MAR11934" name="Exchange of Methylammonium" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -471052,7 +470040,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11934">
+            <rdf:Description rdf:about="#R_MAR11934">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_mma_e"/>
@@ -471064,10 +470052,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02473e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02473e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR11935" sboTerm="SBO:0000185" id="MAR11935" name="Assumed Passive Diffusion into Extracellular Space" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11935" sboTerm="SBO:0000185" id="R_MAR11935" name="Assumed Passive Diffusion into Extracellular Space" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -471075,7 +470063,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11935">
+            <rdf:Description rdf:about="#R_MAR11935">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/12PPDRte"/>
@@ -471086,13 +470074,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02771c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02771c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02771e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02771e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11936" sboTerm="SBO:0000627" id="MAR11936" name="Exchange of (R)-Propane-1,2-Diol" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11936" sboTerm="SBO:0000627" id="R_MAR11936" name="Exchange of (R)-Propane-1,2-Diol" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -471100,7 +470088,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11936">
+            <rdf:Description rdf:about="#R_MAR11936">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_12ppd__R_e"/>
@@ -471112,10 +470100,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02771e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02771e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR11937" sboTerm="SBO:0000185" id="MAR11937" name="Assumed Passive Diffusion into Extracellular Space" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11937" sboTerm="SBO:0000185" id="R_MAR11937" name="Assumed Passive Diffusion into Extracellular Space" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -471124,7 +470112,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11937">
+            <rdf:Description rdf:about="#R_MAR11937">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/AMETAMte"/>
@@ -471135,13 +470123,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02870c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02870c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02870e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02870e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11938" sboTerm="SBO:0000627" id="MAR11938" name="Exchange of S-Adenosylmethioninamine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11938" sboTerm="SBO:0000627" id="R_MAR11938" name="Exchange of S-Adenosylmethioninamine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -471149,7 +470137,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11938">
+            <rdf:Description rdf:about="#R_MAR11938">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_ametam_e"/>
@@ -471160,10 +470148,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02870e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02870e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR11939" sboTerm="SBO:0000185" id="MAR11939" name="Assumed Passive Diffusion into Extracellular Space" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11939" sboTerm="SBO:0000185" id="R_MAR11939" name="Assumed Passive Diffusion into Extracellular Space" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -471171,7 +470159,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11939">
+            <rdf:Description rdf:about="#R_MAR11939">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/XYLULte"/>
@@ -471182,13 +470170,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02425c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02425c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02425e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02425e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11940" sboTerm="SBO:0000627" id="MAR11940" name="Exchange of L-Xylulose" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11940" sboTerm="SBO:0000627" id="R_MAR11940" name="Exchange of L-Xylulose" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -471196,7 +470184,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11940">
+            <rdf:Description rdf:about="#R_MAR11940">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_xylu__L_e"/>
@@ -471208,10 +470196,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02425e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02425e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR11941" sboTerm="SBO:0000185" id="MAR11941" name="Assumed Passive Diffusion into Extracellular Space" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11941" sboTerm="SBO:0000185" id="R_MAR11941" name="Assumed Passive Diffusion into Extracellular Space" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -471219,7 +470207,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11941">
+            <rdf:Description rdf:about="#R_MAR11941">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/XYLUDte"/>
@@ -471230,13 +470218,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01759c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01759e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01759e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11942" sboTerm="SBO:0000627" id="MAR11942" name="Exchange of Xylu_D" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11942" sboTerm="SBO:0000627" id="R_MAR11942" name="Exchange of Xylu_D" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -471244,7 +470232,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11942">
+            <rdf:Description rdf:about="#R_MAR11942">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_xylu__D_e"/>
@@ -471255,10 +470243,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01759e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01759e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR11943" sboTerm="SBO:0000185" id="MAR11943" name="Assumed Passive Diffusion into Extracellular Space" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11943" sboTerm="SBO:0000185" id="R_MAR11943" name="Assumed Passive Diffusion into Extracellular Space" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -471266,7 +470254,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11943">
+            <rdf:Description rdf:about="#R_MAR11943">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GLCNte"/>
@@ -471277,13 +470265,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01683c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01683c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01683e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01683e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11944" sboTerm="SBO:0000185" id="MAR11944" name="Assumed Passive Diffusion into Extracellular Space" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11944" sboTerm="SBO:0000185" id="R_MAR11944" name="Assumed Passive Diffusion into Extracellular Space" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -471292,7 +470280,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11944">
+            <rdf:Description rdf:about="#R_MAR11944">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CE0737te"/>
@@ -471303,13 +470291,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02441c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02441c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02441e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02441e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11945" sboTerm="SBO:0000627" id="MAR11945" name="Exchange of Malonic Dialdehyde" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11945" sboTerm="SBO:0000627" id="R_MAR11945" name="Exchange of Malonic Dialdehyde" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -471317,7 +470305,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11945">
+            <rdf:Description rdf:about="#R_MAR11945">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_CE0737_e"/>
@@ -471328,10 +470316,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02441e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02441e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR11946" sboTerm="SBO:0000185" id="MAR11946" name="Assumed Passive Diffusion into Extracellular Space" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11946" sboTerm="SBO:0000185" id="R_MAR11946" name="Assumed Passive Diffusion into Extracellular Space" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -471339,7 +470327,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11946">
+            <rdf:Description rdf:about="#R_MAR11946">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/CH4Ste"/>
@@ -471349,13 +470337,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03510c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03510c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03510e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03510e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11947" sboTerm="SBO:0000627" id="MAR11947" name="Exchange of Sphingosine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11947" sboTerm="SBO:0000627" id="R_MAR11947" name="Exchange of Sphingosine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -471363,7 +470351,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11947">
+            <rdf:Description rdf:about="#R_MAR11947">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_sphings_e"/>
@@ -471374,10 +470362,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02929e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02929e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR11948" sboTerm="SBO:0000185" id="MAR11948" name="Passive Diffusion into Extracellular Space" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11948" sboTerm="SBO:0000185" id="R_MAR11948" name="Passive Diffusion into Extracellular Space" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -471386,7 +470374,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11948">
+            <rdf:Description rdf:about="#R_MAR11948">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/HDD2CRNte"/>
@@ -471397,13 +470385,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02117c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02117c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02117e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02117e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11949" sboTerm="SBO:0000627" id="MAR11949" name="Exchange of Trans-Hexadec-2-Enoyl Carnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11949" sboTerm="SBO:0000627" id="R_MAR11949" name="Exchange of Trans-Hexadec-2-Enoyl Carnitine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -471411,7 +470399,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11949">
+            <rdf:Description rdf:about="#R_MAR11949">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_hdd2crn_e"/>
@@ -471422,10 +470410,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02117e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02117e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR11950" sboTerm="SBO:0000185" id="MAR11950" name="Assumed Passive Diffusion into Extracellular Space" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11950" sboTerm="SBO:0000185" id="R_MAR11950" name="Assumed Passive Diffusion into Extracellular Space" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -471433,7 +470421,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11950">
+            <rdf:Description rdf:about="#R_MAR11950">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/IM4ACte"/>
@@ -471444,13 +470432,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02166e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02166e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02166c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02166c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11951" sboTerm="SBO:0000627" id="MAR11951" name="Exchange of Imidazol-4-Ylacetate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11951" sboTerm="SBO:0000627" id="R_MAR11951" name="Exchange of Imidazol-4-Ylacetate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -471458,7 +470446,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11951">
+            <rdf:Description rdf:about="#R_MAR11951">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_im4ac_e"/>
@@ -471469,10 +470457,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02166e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02166e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR11952" sboTerm="SBO:0000627" id="MAR11952" name="Exchange of 5-Hydroxytryptophol" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11952" sboTerm="SBO:0000627" id="R_MAR11952" name="Exchange of 5-Hydroxytryptophol" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -471480,7 +470468,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11952">
+            <rdf:Description rdf:about="#R_MAR11952">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_CE1918_e"/>
@@ -471491,10 +470479,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01110e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01110e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR11953" sboTerm="SBO:0000627" id="MAR11953" name="Exchange of 5,10-Methylenetetrahydrofolate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11953" sboTerm="SBO:0000627" id="R_MAR11953" name="Exchange of 5,10-Methylenetetrahydrofolate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -471502,7 +470490,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11953">
+            <rdf:Description rdf:about="#R_MAR11953">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_mlthf_e"/>
@@ -471513,10 +470501,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01045e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01045e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR11954" sboTerm="SBO:0000627" id="MAR11954" name="Exchange of Protoporphyrin" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11954" sboTerm="SBO:0000627" id="R_MAR11954" name="Exchange of Protoporphyrin" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -471524,7 +470512,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11954">
+            <rdf:Description rdf:about="#R_MAR11954">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_ppp9_e"/>
@@ -471535,10 +470523,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02803e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02803e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR11955" sboTerm="SBO:0000185" id="MAR11955" name="Assumed Passive Diffusion into Extracellular Space" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11955" sboTerm="SBO:0000185" id="R_MAR11955" name="Assumed Passive Diffusion into Extracellular Space" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -471546,7 +470534,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11955">
+            <rdf:Description rdf:about="#R_MAR11955">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/AACTte"/>
@@ -471557,13 +470545,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01332e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01332e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01332c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01332c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11956" sboTerm="SBO:0000627" id="MAR11956" name="Exchange of Ammonioacetone" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11956" sboTerm="SBO:0000627" id="R_MAR11956" name="Exchange of Ammonioacetone" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -471571,7 +470559,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11956">
+            <rdf:Description rdf:about="#R_MAR11956">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_aact_e"/>
@@ -471582,10 +470570,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01332e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01332e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR11957" sboTerm="SBO:0000627" id="MAR11957" name="Exchange of Quinonoid Dihydrobiopterin" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11957" sboTerm="SBO:0000627" id="R_MAR11957" name="Exchange of Quinonoid Dihydrobiopterin" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -471593,7 +470581,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11957">
+            <rdf:Description rdf:about="#R_MAR11957">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_CE2705_e"/>
@@ -471604,10 +470592,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02823e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02823e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR11958" sboTerm="SBO:0000185" id="MAR11958" name="Passive Diffusion into Extracellular Space" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11958" sboTerm="SBO:0000185" id="R_MAR11958" name="Passive Diffusion into Extracellular Space" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -471616,7 +470604,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11958">
+            <rdf:Description rdf:about="#R_MAR11958">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/SPHGNte"/>
@@ -471627,13 +470615,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02927e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02927e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02927c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02927c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11959" sboTerm="SBO:0000627" id="MAR11959" name="Exchange of Sphinganine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11959" sboTerm="SBO:0000627" id="R_MAR11959" name="Exchange of Sphinganine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -471641,7 +470629,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11959">
+            <rdf:Description rdf:about="#R_MAR11959">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_sphgn_e"/>
@@ -471652,10 +470640,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02927e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02927e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR11960" sboTerm="SBO:0000185" id="MAR11960" name="Assumed Passive Diffusion into Extracellular Space" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11960" sboTerm="SBO:0000185" id="R_MAR11960" name="Assumed Passive Diffusion into Extracellular Space" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -471663,7 +470651,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11960">
+            <rdf:Description rdf:about="#R_MAR11960">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/SELMETHt2e"/>
@@ -471674,13 +470662,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02891e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02891e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02891c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02891c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11961" sboTerm="SBO:0000627" id="MAR11961" name="Exchange of Selenomethionine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11961" sboTerm="SBO:0000627" id="R_MAR11961" name="Exchange of Selenomethionine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -471688,7 +470676,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11961">
+            <rdf:Description rdf:about="#R_MAR11961">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/EX_selmeth[e]"/>
@@ -471698,10 +470686,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02891e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02891e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR11962" sboTerm="SBO:0000627" id="MAR11962" name="Exchange of N(1)-Acetylspermidine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11962" sboTerm="SBO:0000627" id="R_MAR11962" name="Exchange of N(1)-Acetylspermidine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -471709,7 +470697,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11962">
+            <rdf:Description rdf:about="#R_MAR11962">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_N1aspmd_e"/>
@@ -471720,10 +470708,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02503e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02503e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR11963" sboTerm="SBO:0000185" id="MAR11963" name="Assumed Passive Diffusion into Extracellular Space" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11963" sboTerm="SBO:0000185" id="R_MAR11963" name="Assumed Passive Diffusion into Extracellular Space" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -471732,7 +470720,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11963">
+            <rdf:Description rdf:about="#R_MAR11963">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/C13856te"/>
@@ -471743,13 +470731,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00635c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00635c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00635e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00635e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11964" sboTerm="SBO:0000185" id="MAR11964" name="Assumed Passive Diffusion into Extracellular Space" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11964" sboTerm="SBO:0000185" id="R_MAR11964" name="Assumed Passive Diffusion into Extracellular Space" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -471757,7 +470745,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11964">
+            <rdf:Description rdf:about="#R_MAR11964">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/1A25DHVITD3t2e"/>
@@ -471767,13 +470755,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01417c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01417c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01417e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01417e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11965" sboTerm="SBO:0000627" id="MAR11965" name="Exchange of Calcitriol" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11965" sboTerm="SBO:0000627" id="R_MAR11965" name="Exchange of Calcitriol" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -471781,7 +470769,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11965">
+            <rdf:Description rdf:about="#R_MAR11965">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_1a25dhvitd3_e"/>
@@ -471792,10 +470780,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01417e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01417e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR11966" sboTerm="SBO:0000185" id="MAR11966" name="Transport (ATP-Dependent) into Extracellular Space" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11966" sboTerm="SBO:0000185" id="R_MAR11966" name="Transport (ATP-Dependent) into Extracellular Space" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -471804,7 +470792,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11966">
+            <rdf:Description rdf:about="#R_MAR11966">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PRISTte"/>
@@ -471815,18 +470803,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02766c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02766c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02766e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02766e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11967" sboTerm="SBO:0000627" id="MAR11967" name="Exchange of Pristanic Acid" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11967" sboTerm="SBO:0000627" id="R_MAR11967" name="Exchange of Pristanic Acid" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -471834,7 +470822,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11967">
+            <rdf:Description rdf:about="#R_MAR11967">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_prist_e"/>
@@ -471845,10 +470833,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02766e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02766e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR11968" sboTerm="SBO:0000185" id="MAR11968" name="Transport (ATP-Dependent) into Extracellular Space" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11968" sboTerm="SBO:0000185" id="R_MAR11968" name="Transport (ATP-Dependent) into Extracellular Space" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -471857,7 +470845,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11968">
+            <rdf:Description rdf:about="#R_MAR11968">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CE2049te"/>
@@ -471868,18 +470856,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00314c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00314c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00314e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00314e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11969" sboTerm="SBO:0000627" id="MAR11969" name="Exchange of 12,13-Hydroxyoctadec-9(Z)-Enoate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11969" sboTerm="SBO:0000627" id="R_MAR11969" name="Exchange of 12,13-Hydroxyoctadec-9(Z)-Enoate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -471887,7 +470875,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11969">
+            <rdf:Description rdf:about="#R_MAR11969">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_CE2049_e"/>
@@ -471898,10 +470886,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00314e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00314e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR11970" sboTerm="SBO:0000185" id="MAR11970" name="Transport (ATP-Dependent) into Extracellular Space" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11970" sboTerm="SBO:0000185" id="R_MAR11970" name="Transport (ATP-Dependent) into Extracellular Space" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -471910,7 +470898,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11970">
+            <rdf:Description rdf:about="#R_MAR11970">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CE2047te"/>
@@ -471921,18 +470909,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01220c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01220c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01220e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01220e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11971" sboTerm="SBO:0000627" id="MAR11971" name="Exchange of 9,10-Hydroxyoctadec-12(Z)-Enoate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11971" sboTerm="SBO:0000627" id="R_MAR11971" name="Exchange of 9,10-Hydroxyoctadec-12(Z)-Enoate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -471940,7 +470928,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11971">
+            <rdf:Description rdf:about="#R_MAR11971">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_CE2047_e"/>
@@ -471951,10 +470939,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01220e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01220e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR11972" sboTerm="SBO:0000185" id="MAR11972" name="Transport of Lanosterol" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11972" sboTerm="SBO:0000185" id="R_MAR11972" name="Transport of Lanosterol" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -471963,7 +470951,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11972">
+            <rdf:Description rdf:about="#R_MAR11972">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/LANOSTt"/>
@@ -471975,13 +470963,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02336c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02336c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02336e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02336e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11973" sboTerm="SBO:0000185" id="MAR11973" name="Transport to Extracellular Space" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11973" sboTerm="SBO:0000185" id="R_MAR11973" name="Transport to Extracellular Space" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -471989,7 +470977,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11973">
+            <rdf:Description rdf:about="#R_MAR11973">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FDPte"/>
@@ -472000,13 +470988,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01841c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01841c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01841e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01841e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11974" sboTerm="SBO:0000627" id="MAR11974" name="Exchange of D-Fructose 1,6-Bisphosphate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11974" sboTerm="SBO:0000627" id="R_MAR11974" name="Exchange of D-Fructose 1,6-Bisphosphate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -472014,7 +471002,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11974">
+            <rdf:Description rdf:about="#R_MAR11974">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_fdp_e"/>
@@ -472025,10 +471013,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01841e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01841e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR11975" sboTerm="SBO:0000627" id="MAR11975" name="Exchange of Cocaine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11975" sboTerm="SBO:0000627" id="R_MAR11975" name="Exchange of Cocaine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -472036,7 +471024,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11975">
+            <rdf:Description rdf:about="#R_MAR11975">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_coke_e"/>
@@ -472047,10 +471035,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01601e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01601e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR11976" sboTerm="SBO:0000185" id="MAR11976" name="Transport of Cocaine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11976" sboTerm="SBO:0000185" id="R_MAR11976" name="Transport of Cocaine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -472058,7 +471046,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11976">
+            <rdf:Description rdf:about="#R_MAR11976">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/COKEte"/>
@@ -472069,13 +471057,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01601e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01601e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01601c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01601c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11977" sboTerm="SBO:0000185" id="MAR11977" name="Transport of Cocaine, Endoplasmic Reticulum" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11977" sboTerm="SBO:0000185" id="R_MAR11977" name="Transport of Cocaine, Endoplasmic Reticulum" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -472083,7 +471071,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11977">
+            <rdf:Description rdf:about="#R_MAR11977">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/COKEtr"/>
@@ -472094,13 +471082,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01601c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01601c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01601r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01601r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11978" sboTerm="SBO:0000627" id="MAR11978" name="Exchange of 5-Amino-2-Oxopentanoic Acid" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11978" sboTerm="SBO:0000627" id="R_MAR11978" name="Exchange of 5-Amino-2-Oxopentanoic Acid" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -472108,7 +471096,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11978">
+            <rdf:Description rdf:about="#R_MAR11978">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_5a2opntn_e"/>
@@ -472119,10 +471107,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01073e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01073e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR11979" sboTerm="SBO:0000185" id="MAR11979" name="Transport of 5-Amino-2-Oxopentanoic Acid, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11979" sboTerm="SBO:0000185" id="R_MAR11979" name="Transport of 5-Amino-2-Oxopentanoic Acid, Extracellular" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -472130,7 +471118,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11979">
+            <rdf:Description rdf:about="#R_MAR11979">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/5A2OPNTNte"/>
@@ -472141,13 +471129,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01073c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01073c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01073e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01073e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11980" sboTerm="SBO:0000185" id="MAR11980" name="Transport of 5-Amino-2-Oxopentanoic Acid, Peroxisome" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11980" sboTerm="SBO:0000185" id="R_MAR11980" name="Transport of 5-Amino-2-Oxopentanoic Acid, Peroxisome" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -472155,7 +471143,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11980">
+            <rdf:Description rdf:about="#R_MAR11980">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/5A2OPNTNtx"/>
@@ -472166,13 +471154,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01073x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01073x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01073c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01073c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11981" sboTerm="SBO:0000185" id="MAR11981" name="Transport of Lanosterol, Endoplasmic Reticulum" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11981" sboTerm="SBO:0000185" id="R_MAR11981" name="Transport of Lanosterol, Endoplasmic Reticulum" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -472180,7 +471168,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11981">
+            <rdf:Description rdf:about="#R_MAR11981">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/LANOSTtr"/>
@@ -472191,13 +471179,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02336r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02336r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02336c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02336c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11982" sboTerm="SBO:0000627" id="MAR11982" name="Exchange of VLDL_Hs" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11982" sboTerm="SBO:0000627" id="R_MAR11982" name="Exchange of VLDL_Hs" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -472205,7 +471193,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11982">
+            <rdf:Description rdf:about="#R_MAR11982">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/EX_vldl_hs[e]"/>
@@ -472215,10 +471203,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM04074e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04074e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR11983" sboTerm="SBO:0000627" id="MAR11983" name="Exchange of IDL_Hs" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11983" sboTerm="SBO:0000627" id="R_MAR11983" name="Exchange of IDL_Hs" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -472226,7 +471214,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11983">
+            <rdf:Description rdf:about="#R_MAR11983">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_idl_hs_e"/>
@@ -472237,10 +471225,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03692e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03692e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR11984" sboTerm="SBO:0000627" id="MAR11984" name="Exchange of LDL_Hs" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11984" sboTerm="SBO:0000627" id="R_MAR11984" name="Exchange of LDL_Hs" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -472248,7 +471236,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11984">
+            <rdf:Description rdf:about="#R_MAR11984">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_ldl_hs_e"/>
@@ -472259,10 +471247,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03710e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03710e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR11985" sboTerm="SBO:0000627" id="MAR11985" name="Exchange of HDL_Hs" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11985" sboTerm="SBO:0000627" id="R_MAR11985" name="Exchange of HDL_Hs" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -472270,7 +471258,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11985">
+            <rdf:Description rdf:about="#R_MAR11985">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_hdl_hs_e"/>
@@ -472281,10 +471269,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03647e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03647e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR11986" sboTerm="SBO:0000185" id="MAR11986" name="Transport of Apo B, Extracellular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11986" sboTerm="SBO:0000185" id="R_MAR11986" name="Transport of Apo B, Extracellular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -472292,7 +471280,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11986">
+            <rdf:Description rdf:about="#R_MAR11986">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HC00005te"/>
@@ -472302,13 +471290,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01351c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01351c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01351e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01351e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11987" sboTerm="SBO:0000627" id="MAR11987" name="Exchange of ApoB100" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11987" sboTerm="SBO:0000627" id="R_MAR11987" name="Exchange of ApoB100" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -472316,7 +471304,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11987">
+            <rdf:Description rdf:about="#R_MAR11987">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_HC00005_e"/>
@@ -472327,10 +471315,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01351e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01351e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR11988" sboTerm="SBO:0000185" id="MAR11988" name="Transport of Apo B, Extracellular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11988" sboTerm="SBO:0000185" id="R_MAR11988" name="Transport of Apo B, Extracellular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -472338,7 +471326,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11988">
+            <rdf:Description rdf:about="#R_MAR11988">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HC00005t1e"/>
@@ -472348,13 +471336,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01351e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01351e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01351c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01351c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11989" sboTerm="SBO:0000185" id="MAR11989" name="Transport of Apo C1, Extracellular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11989" sboTerm="SBO:0000185" id="R_MAR11989" name="Transport of Apo C1, Extracellular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -472362,7 +471350,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11989">
+            <rdf:Description rdf:about="#R_MAR11989">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HC00006te"/>
@@ -472372,13 +471360,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01353c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01353c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01353e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01353e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11990" sboTerm="SBO:0000627" id="MAR11990" name="Exchange of Apo C1" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11990" sboTerm="SBO:0000627" id="R_MAR11990" name="Exchange of Apo C1" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -472386,7 +471374,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11990">
+            <rdf:Description rdf:about="#R_MAR11990">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_HC00006_e"/>
@@ -472397,10 +471385,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01353e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01353e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR11991" sboTerm="SBO:0000185" id="MAR11991" name="Transport of Apo C1, Extracellular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11991" sboTerm="SBO:0000185" id="R_MAR11991" name="Transport of Apo C1, Extracellular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -472408,7 +471396,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11991">
+            <rdf:Description rdf:about="#R_MAR11991">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HC00006t1e"/>
@@ -472418,13 +471406,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01353e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01353e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01353c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01353c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11992" sboTerm="SBO:0000185" id="MAR11992" name="Transport of Apo C2, Extracellular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11992" sboTerm="SBO:0000185" id="R_MAR11992" name="Transport of Apo C2, Extracellular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -472432,7 +471420,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11992">
+            <rdf:Description rdf:about="#R_MAR11992">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HC00007te"/>
@@ -472442,13 +471430,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01354c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01354c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01354e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01354e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11993" sboTerm="SBO:0000627" id="MAR11993" name="Exchange of Apo C2" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11993" sboTerm="SBO:0000627" id="R_MAR11993" name="Exchange of Apo C2" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -472456,7 +471444,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11993">
+            <rdf:Description rdf:about="#R_MAR11993">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_HC00007_e"/>
@@ -472467,10 +471455,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01354e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01354e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR11994" sboTerm="SBO:0000185" id="MAR11994" name="Transport of Apo C2, Extracellular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11994" sboTerm="SBO:0000185" id="R_MAR11994" name="Transport of Apo C2, Extracellular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -472478,7 +471466,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11994">
+            <rdf:Description rdf:about="#R_MAR11994">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HC00007t1e"/>
@@ -472488,13 +471476,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01354e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01354e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01354c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01354c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11995" sboTerm="SBO:0000185" id="MAR11995" name="Transport of Apo C3, Extracellular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11995" sboTerm="SBO:0000185" id="R_MAR11995" name="Transport of Apo C3, Extracellular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -472502,7 +471490,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11995">
+            <rdf:Description rdf:about="#R_MAR11995">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HC00008te"/>
@@ -472512,13 +471500,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01355c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01355c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01355e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01355e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11996" sboTerm="SBO:0000627" id="MAR11996" name="Exchange of Apo C3" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11996" sboTerm="SBO:0000627" id="R_MAR11996" name="Exchange of Apo C3" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -472526,7 +471514,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11996">
+            <rdf:Description rdf:about="#R_MAR11996">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_HC00008_e"/>
@@ -472537,10 +471525,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01355e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01355e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR11997" sboTerm="SBO:0000185" id="MAR11997" name="Transport of Apo C3, Extracellular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11997" sboTerm="SBO:0000185" id="R_MAR11997" name="Transport of Apo C3, Extracellular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -472548,7 +471536,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11997">
+            <rdf:Description rdf:about="#R_MAR11997">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HC00008t1e"/>
@@ -472558,13 +471546,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01355e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01355e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01355c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01355c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11998" sboTerm="SBO:0000185" id="MAR11998" name="Transport of Apo E, Extracellular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11998" sboTerm="SBO:0000185" id="R_MAR11998" name="Transport of Apo E, Extracellular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -472572,7 +471560,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11998">
+            <rdf:Description rdf:about="#R_MAR11998">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HC00009te"/>
@@ -472582,13 +471570,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01359c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01359c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01359e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01359e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR11999" sboTerm="SBO:0000627" id="MAR11999" name="Exchange of Apo E" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR11999" sboTerm="SBO:0000627" id="R_MAR11999" name="Exchange of Apo E" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -472596,7 +471584,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR11999">
+            <rdf:Description rdf:about="#R_MAR11999">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_HC00009_e"/>
@@ -472607,10 +471595,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01359e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01359e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12000" sboTerm="SBO:0000185" id="MAR12000" name="Transport of Apo E, Extracellular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12000" sboTerm="SBO:0000185" id="R_MAR12000" name="Transport of Apo E, Extracellular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -472618,7 +471606,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12000">
+            <rdf:Description rdf:about="#R_MAR12000">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HC00009t1e"/>
@@ -472628,13 +471616,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01359e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01359e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01359c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01359c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12001" sboTerm="SBO:0000176" id="MAR12001" name="Dopamine 4-O-Sulfotransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12001" sboTerm="SBO:0000176" id="R_MAR12001" name="Dopamine 4-O-Sulfotransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -472643,7 +471631,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12001">
+            <rdf:Description rdf:about="#R_MAR12001">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.8.2.1"/>
@@ -472655,19 +471643,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01736c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02682c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01736c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02682c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02681c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03565c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02681c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03565c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="St1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12002" sboTerm="SBO:0000176" id="MAR12002" name="Dopamine 4-O-Glucuronidation" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12002" sboTerm="SBO:0000176" id="R_MAR12002" name="Dopamine 4-O-Glucuronidation" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -472676,7 +471664,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12002">
+            <rdf:Description rdf:about="#R_MAR12002">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.17"/>
@@ -472688,13 +471676,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01736c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03109c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01736c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03109c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03564c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03564c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -472707,7 +471695,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12003" sboTerm="SBO:0000176" id="MAR12003" name="Dopamine 3-O-Glucuronidation" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12003" sboTerm="SBO:0000176" id="R_MAR12003" name="Dopamine 3-O-Glucuronidation" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -472716,7 +471704,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12003">
+            <rdf:Description rdf:about="#R_MAR12003">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.17"/>
@@ -472728,13 +471716,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01736c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03109c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01736c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03109c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03563c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03563c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -472747,7 +471735,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12005" sboTerm="SBO:0000176" id="MAR12005" name="3, 4-Dihydroxyphenylethanol:NADP+ Reductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12005" sboTerm="SBO:0000176" id="R_MAR12005" name="3, 4-Dihydroxyphenylethanol:NADP+ Reductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -472756,7 +471744,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12005">
+            <rdf:Description rdf:about="#R_MAR12005">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.2"/>
@@ -472768,19 +471756,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00728c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00728c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03197c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03197c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG2767"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12006" sboTerm="SBO:0000185" id="MAR12006" name="Dopamine 4-0-Sulfate Transport (Diffusion)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12006" sboTerm="SBO:0000185" id="R_MAR12006" name="Dopamine 4-0-Sulfate Transport (Diffusion)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -472789,7 +471777,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12006">
+            <rdf:Description rdf:about="#R_MAR12006">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/DOPA4SFt"/>
@@ -472800,13 +471788,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03565c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03565c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03565e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03565e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12007" sboTerm="SBO:0000627" id="MAR12007" name="Exchange of Dopamine 4-O-Sulfate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12007" sboTerm="SBO:0000627" id="R_MAR12007" name="Exchange of Dopamine 4-O-Sulfate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -472814,7 +471802,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12007">
+            <rdf:Description rdf:about="#R_MAR12007">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_dopa4sf_e"/>
@@ -472825,10 +471813,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03565e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03565e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12008" sboTerm="SBO:0000185" id="MAR12008" name="Dopamine 4-O-Glucuronide Transport" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12008" sboTerm="SBO:0000185" id="R_MAR12008" name="Dopamine 4-O-Glucuronide Transport" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -472836,7 +471824,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12008">
+            <rdf:Description rdf:about="#R_MAR12008">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.6.3.44"/>
@@ -472848,21 +471836,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03564c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03564c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03564e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03564e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="MRP"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12009" sboTerm="SBO:0000627" id="MAR12009" name="Exchange of Dopamine 4-O-Glucuronide" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12009" sboTerm="SBO:0000627" id="R_MAR12009" name="Exchange of Dopamine 4-O-Glucuronide" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -472870,7 +471858,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12009">
+            <rdf:Description rdf:about="#R_MAR12009">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_dopa4glcur_e"/>
@@ -472881,10 +471869,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03564e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03564e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12010" sboTerm="SBO:0000185" id="MAR12010" name="Dopamine 3-O-Glucuronide Transport" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12010" sboTerm="SBO:0000185" id="R_MAR12010" name="Dopamine 3-O-Glucuronide Transport" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -472893,7 +471881,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12010">
+            <rdf:Description rdf:about="#R_MAR12010">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.6.3.44"/>
@@ -472905,21 +471893,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03563c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03563c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03563e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03563e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="MRP"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12011" sboTerm="SBO:0000627" id="MAR12011" name="Exchange of Dopamine 3-O-Glucuronide" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12011" sboTerm="SBO:0000627" id="R_MAR12011" name="Exchange of Dopamine 3-O-Glucuronide" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -472927,7 +471915,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12011">
+            <rdf:Description rdf:about="#R_MAR12011">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_dopa3glcur_e"/>
@@ -472938,10 +471926,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03563e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03563e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12012" sboTerm="SBO:0000176" id="MAR12012" name="L-Dopachrome Decarboxylation" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12012" sboTerm="SBO:0000176" id="R_MAR12012" name="L-Dopachrome Decarboxylation" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -472950,7 +471938,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12012">
+            <rdf:Description rdf:about="#R_MAR12012">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/DOPACHRMDC"/>
@@ -472961,15 +471949,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02355c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02355c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01596c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01739c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01596c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01739c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12013" sboTerm="SBO:0000185" id="MAR12013" name="Transport of 5-S-Glutathionyl-L-Dopa" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12013" sboTerm="SBO:0000185" id="R_MAR12013" name="Transport of 5-S-Glutathionyl-L-Dopa" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -472978,7 +471966,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12013">
+            <rdf:Description rdf:about="#R_MAR12013">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.6.3.44"/>
@@ -472990,15 +471978,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01139c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01139c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01139e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01139e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -473007,7 +471995,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12014" sboTerm="SBO:0000176" id="MAR12014" name="Gamma-Glutamyltransferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12014" sboTerm="SBO:0000176" id="R_MAR12014" name="Gamma-Glutamyltransferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -473016,7 +472004,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12014">
+            <rdf:Description rdf:about="#R_MAR12014">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.2.2"/>
@@ -473028,18 +472016,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01139e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01139e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01974e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03282e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01974e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03282e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG1492"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12015" sboTerm="SBO:0000176" id="MAR12015" name="Cysteinylglycine Dipeptidase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12015" sboTerm="SBO:0000176" id="R_MAR12015" name="Cysteinylglycine Dipeptidase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -473048,7 +472036,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12015">
+            <rdf:Description rdf:about="#R_MAR12015">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CYSGLYPTASEe_1"/>
@@ -473059,15 +472047,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03282e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03282e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01986e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01134e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01134e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12016" sboTerm="SBO:0000185" id="MAR12016" name="Transport of 5-S-Cysteinyldopa" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12016" sboTerm="SBO:0000185" id="R_MAR12016" name="Transport of 5-S-Cysteinyldopa" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -473075,7 +472063,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12016">
+            <rdf:Description rdf:about="#R_MAR12016">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CE1261t"/>
@@ -473086,13 +472074,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01134c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01134c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01134e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01134e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12017" sboTerm="SBO:0000176" id="MAR12017" name="Dopamine-O-Quinone Oxidase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12017" sboTerm="SBO:0000176" id="R_MAR12017" name="Dopamine-O-Quinone Oxidase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -473101,7 +472089,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12017">
+            <rdf:Description rdf:about="#R_MAR12017">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/DOPAOQNOX"/>
@@ -473112,15 +472100,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01738c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02041c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01738c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03295c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03295c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12018" sboTerm="SBO:0000176" id="MAR12018" name="Dopamine-O-Quinone Cysteine Addition" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12018" sboTerm="SBO:0000176" id="R_MAR12018" name="Dopamine-O-Quinone Cysteine Addition" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -473129,7 +472117,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12018">
+            <rdf:Description rdf:about="#R_MAR12018">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/DOPAOQCYS"/>
@@ -473140,14 +472128,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01628c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01738c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01628c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01738c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03281c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03281c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12019" sboTerm="SBO:0000176" id="MAR12019" name="Leukoaminochrome Autoxidation" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12019" sboTerm="SBO:0000176" id="R_MAR12019" name="Leukoaminochrome Autoxidation" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -473156,7 +472144,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12019">
+            <rdf:Description rdf:about="#R_MAR12019">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/LACROX"/>
@@ -473167,15 +472155,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02361c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02361c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02041c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02160c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02160c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12022" sboTerm="SBO:0000176" id="MAR12022" name="2, 3-Dihydro-1H-Indole-5, 6-Dione Tautomerization" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12022" sboTerm="SBO:0000176" id="R_MAR12022" name="2, 3-Dihydro-1H-Indole-5, 6-Dione Tautomerization" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -473183,7 +472171,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12022">
+            <rdf:Description rdf:about="#R_MAR12022">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/DACT"/>
@@ -473194,13 +472182,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02160c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02160c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01739c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01739c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12025" sboTerm="SBO:0000185" id="MAR12025" name="Transport of 4-S-Glutathionyl-5, 6-Dihydroxyindoline" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12025" sboTerm="SBO:0000185" id="R_MAR12025" name="Transport of 4-S-Glutathionyl-5, 6-Dihydroxyindoline" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -473208,7 +472196,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12025">
+            <rdf:Description rdf:about="#R_MAR12025">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/4GLU56DIHDINDt"/>
@@ -473219,18 +472207,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03270c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03270c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03270e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03270e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12026" sboTerm="SBO:0000627" id="MAR12026" name="Exchange of 4-S-Glutathionyl-5, 6-Dihydroxyindoline" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12026" sboTerm="SBO:0000627" id="R_MAR12026" name="Exchange of 4-S-Glutathionyl-5, 6-Dihydroxyindoline" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -473238,7 +472226,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12026">
+            <rdf:Description rdf:about="#R_MAR12026">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_4glu56dihdind_e"/>
@@ -473249,10 +472237,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03270e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03270e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12027" sboTerm="SBO:0000185" id="MAR12027" name="Transport of 5-S-Cysteinyldopamine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12027" sboTerm="SBO:0000185" id="R_MAR12027" name="Transport of 5-S-Cysteinyldopamine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -473260,7 +472248,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12027">
+            <rdf:Description rdf:about="#R_MAR12027">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/5CYSDOPAt"/>
@@ -473271,13 +472259,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03281c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03281c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03281e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03281e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12028" sboTerm="SBO:0000627" id="MAR12028" name="Exchange of 5-S-Cysteinyldopamine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12028" sboTerm="SBO:0000627" id="R_MAR12028" name="Exchange of 5-S-Cysteinyldopamine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -473285,7 +472273,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12028">
+            <rdf:Description rdf:about="#R_MAR12028">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_5cysdopa_e"/>
@@ -473296,10 +472284,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03281e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03281e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12029" sboTerm="SBO:0000185" id="MAR12029" name="Transport of 5-S-Glutathionyl-Dopamine" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12029" sboTerm="SBO:0000185" id="R_MAR12029" name="Transport of 5-S-Glutathionyl-Dopamine" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -473307,7 +472295,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12029">
+            <rdf:Description rdf:about="#R_MAR12029">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.6.3.44"/>
@@ -473319,15 +472307,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01138c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01138c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01138e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01138e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -473336,7 +472324,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12030" sboTerm="SBO:0000627" id="MAR12030" name="Exchange of 5-S-Glutathionyl-Dopamine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12030" sboTerm="SBO:0000627" id="R_MAR12030" name="Exchange of 5-S-Glutathionyl-Dopamine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -473344,7 +472332,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12030">
+            <rdf:Description rdf:about="#R_MAR12030">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_CE5025_e"/>
@@ -473355,10 +472343,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01138e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01138e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12031" sboTerm="SBO:0000185" id="MAR12031" name="Transport of 6, 7-Dihydroxy-1, 2, 3, 4-Tetrahydroisoquinoline" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12031" sboTerm="SBO:0000185" id="R_MAR12031" name="Transport of 6, 7-Dihydroxy-1, 2, 3, 4-Tetrahydroisoquinoline" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -473367,7 +472355,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12031">
+            <rdf:Description rdf:about="#R_MAR12031">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CE2172t"/>
@@ -473378,13 +472366,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01154c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01154c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01154e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01154e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12032" sboTerm="SBO:0000627" id="MAR12032" name="Exchange of 6, 7-Dihydroxy-1, 2, 3, 4-Tetrahydroisoquinoline" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12032" sboTerm="SBO:0000627" id="R_MAR12032" name="Exchange of 6, 7-Dihydroxy-1, 2, 3, 4-Tetrahydroisoquinoline" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -473392,7 +472380,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12032">
+            <rdf:Description rdf:about="#R_MAR12032">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_CE2172_e"/>
@@ -473403,10 +472391,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01154e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01154e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12033" sboTerm="SBO:0000185" id="MAR12033" name="Transport of 6, 7-Dihydroxy-1, 2, 3, 4-Tetrahydroisoquinoline" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12033" sboTerm="SBO:0000185" id="R_MAR12033" name="Transport of 6, 7-Dihydroxy-1, 2, 3, 4-Tetrahydroisoquinoline" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -473415,7 +472403,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12033">
+            <rdf:Description rdf:about="#R_MAR12033">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CE5629t"/>
@@ -473426,13 +472414,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00231c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00231c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00231e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00231e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12034" sboTerm="SBO:0000627" id="MAR12034" name="Exchange of 6, 7-Dihydroxy-1, 2, 3, 4-Tetrahydroisoquinoline" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12034" sboTerm="SBO:0000627" id="R_MAR12034" name="Exchange of 6, 7-Dihydroxy-1, 2, 3, 4-Tetrahydroisoquinoline" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -473440,7 +472428,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12034">
+            <rdf:Description rdf:about="#R_MAR12034">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_CE5629_e"/>
@@ -473451,10 +472439,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00231e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00231e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12035" sboTerm="SBO:0000176" id="MAR12035" name="Beta-Galactosidase, Plasma Membrane" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12035" sboTerm="SBO:0000176" id="R_MAR12035" name="Beta-Galactosidase, Plasma Membrane" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -473462,7 +472450,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12035">
+            <rdf:Description rdf:about="#R_MAR12035">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/BGAL1e"/>
@@ -473473,18 +472461,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03586e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03586e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01910e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01972e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01910e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01972e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Ect3"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12036" sboTerm="SBO:0000176" id="MAR12036" name="Beta-Galactosidase, Lysosomal" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12036" sboTerm="SBO:0000176" id="R_MAR12036" name="Beta-Galactosidase, Lysosomal" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -473492,7 +472480,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12036">
+            <rdf:Description rdf:about="#R_MAR12036">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/BGAL1l"/>
@@ -473503,15 +472491,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03635l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03635l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01910l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02011l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01910l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02011l" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12037" sboTerm="SBO:0000176" id="MAR12037" name="Beta-Galactosidase, Lysosomal" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12037" sboTerm="SBO:0000176" id="R_MAR12037" name="Beta-Galactosidase, Lysosomal" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -473519,7 +472507,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12037">
+            <rdf:Description rdf:about="#R_MAR12037">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/BGAL2l"/>
@@ -473530,15 +472518,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01904l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01904l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01910l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01905l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01910l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01905l" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12038" sboTerm="SBO:0000176" id="MAR12038" name="Beta-Galactosidase, Lysosomal" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12038" sboTerm="SBO:0000176" id="R_MAR12038" name="Beta-Galactosidase, Lysosomal" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -473546,7 +472534,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12038">
+            <rdf:Description rdf:about="#R_MAR12038">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/BGAL3l"/>
@@ -473557,18 +472545,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01943l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01943l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01910l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01946l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01910l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01946l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Ect3"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12039" sboTerm="SBO:0000176" id="MAR12039" name="Beta-Galactosidase Lysosomal" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12039" sboTerm="SBO:0000176" id="R_MAR12039" name="Beta-Galactosidase Lysosomal" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -473576,7 +472564,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12039">
+            <rdf:Description rdf:about="#R_MAR12039">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/BGAL4l"/>
@@ -473586,18 +472574,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02009l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02009l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01910l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02014l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01910l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02014l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Ect3"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12040" sboTerm="SBO:0000185" id="MAR12040" name="Ceramide Diffusion" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12040" sboTerm="SBO:0000185" id="R_MAR12040" name="Ceramide Diffusion" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -473605,7 +472593,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12040">
+            <rdf:Description rdf:about="#R_MAR12040">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CRMte"/>
@@ -473616,13 +472604,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01430e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01430e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01430c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01430c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12041" sboTerm="SBO:0000176" id="MAR12041" name="Sphingolipid C-4 Hydroxylase (Des2)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12041" sboTerm="SBO:0000176" id="R_MAR12041" name="Sphingolipid C-4 Hydroxylase (Des2)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -473630,7 +472618,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12041">
+            <rdf:Description rdf:about="#R_MAR12041">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/DES21"/>
@@ -473641,21 +472629,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01699c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01699c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03863c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03863c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="ifc"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12042" sboTerm="SBO:0000627" id="MAR12042" name="Exchange/Demand Reaction" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12042" sboTerm="SBO:0000627" id="R_MAR12042" name="Exchange/Demand Reaction" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -473663,7 +472651,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12042">
+            <rdf:Description rdf:about="#R_MAR12042">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_gd3_hs_e"/>
@@ -473674,10 +472662,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01947e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01947e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12043" sboTerm="SBO:0000627" id="MAR12043" name="Exchange/Demand Reaction" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12043" sboTerm="SBO:0000627" id="R_MAR12043" name="Exchange/Demand Reaction" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -473685,7 +472673,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12043">
+            <rdf:Description rdf:about="#R_MAR12043">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_gluside_hs_e"/>
@@ -473696,10 +472684,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01972e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01972e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12044" sboTerm="SBO:0000627" id="MAR12044" name="Exchange/Demand Reaction" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12044" sboTerm="SBO:0000627" id="R_MAR12044" name="Exchange/Demand Reaction" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -473707,7 +472695,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12044">
+            <rdf:Description rdf:about="#R_MAR12044">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_gm3_hs_e"/>
@@ -473718,10 +472706,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02015e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02015e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12045" sboTerm="SBO:0000185" id="MAR12045" name="Ganglioside Ga1 (Asialo Gm1) Endocytosis" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12045" sboTerm="SBO:0000185" id="R_MAR12045" name="Ganglioside Ga1 (Asialo Gm1) Endocytosis" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -473729,7 +472717,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12045">
+            <rdf:Description rdf:about="#R_MAR12045">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GA1tl"/>
@@ -473740,13 +472728,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01904e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01904e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01904l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01904l" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12046" sboTerm="SBO:0000185" id="MAR12046" name="Ganglioside Gm1A Endocytosis" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12046" sboTerm="SBO:0000185" id="R_MAR12046" name="Ganglioside Gm1A Endocytosis" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -473754,7 +472742,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12046">
+            <rdf:Description rdf:about="#R_MAR12046">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/GM1Atl"/>
@@ -473764,13 +472752,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02009e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02009e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02009l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02009l" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12047" sboTerm="SBO:0000185" id="MAR12047" name="Ganglioside Gm2A Endocytosis" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12047" sboTerm="SBO:0000185" id="R_MAR12047" name="Ganglioside Gm2A Endocytosis" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -473778,7 +472766,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12047">
+            <rdf:Description rdf:about="#R_MAR12047">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/GM2Atl"/>
@@ -473788,13 +472776,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02014e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02014e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02014l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02014l" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12048" sboTerm="SBO:0000185" id="MAR12048" name="Lactosylceramide Endocytosis" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12048" sboTerm="SBO:0000185" id="R_MAR12048" name="Lactosylceramide Endocytosis" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -473802,7 +472790,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12048">
+            <rdf:Description rdf:about="#R_MAR12048">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GALGLUSIDEtg2"/>
@@ -473813,13 +472801,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03586e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03586e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03586g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03586g" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12049" sboTerm="SBO:0000185" id="MAR12049" name="Lactosylceramide Endocytosis" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12049" sboTerm="SBO:0000185" id="R_MAR12049" name="Lactosylceramide Endocytosis" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -473827,7 +472815,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12049">
+            <rdf:Description rdf:about="#R_MAR12049">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GALGLUSIDEtl2"/>
@@ -473838,13 +472826,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03586e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03586e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03586l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03586l" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12050" sboTerm="SBO:0000176" id="MAR12050" name="Beta-Glucosidase, Plasma Membrane (Gba2)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12050" sboTerm="SBO:0000176" id="R_MAR12050" name="Beta-Glucosidase, Plasma Membrane (Gba2)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -473852,7 +472840,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12050">
+            <rdf:Description rdf:about="#R_MAR12050">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GBA2e"/>
@@ -473863,18 +472851,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01972e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01972e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01965e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01430e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01965e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01430e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG33090"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12051" sboTerm="SBO:0000185" id="MAR12051" name="Ganglioside Gd3 Endocytosis" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12051" sboTerm="SBO:0000185" id="R_MAR12051" name="Ganglioside Gd3 Endocytosis" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -473882,7 +472870,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12051">
+            <rdf:Description rdf:about="#R_MAR12051">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GD3tg"/>
@@ -473893,13 +472881,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01947e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01947e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01947g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01947g" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12052" sboTerm="SBO:0000185" id="MAR12052" name="Ganglioside Gd3 Endocytosis" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12052" sboTerm="SBO:0000185" id="R_MAR12052" name="Ganglioside Gd3 Endocytosis" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -473907,7 +472895,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12052">
+            <rdf:Description rdf:about="#R_MAR12052">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GD3tl"/>
@@ -473918,13 +472906,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01947e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01947e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01947l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01947l" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12053" sboTerm="SBO:0000176" id="MAR12053" name="Alpha-Galactosidase, Lysosomal" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12053" sboTerm="SBO:0000176" id="R_MAR12053" name="Alpha-Galactosidase, Lysosomal" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -473932,7 +472920,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12053">
+            <rdf:Description rdf:about="#R_MAR12053">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GLA2l"/>
@@ -473943,15 +472931,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01960l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01960l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01910l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03586l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01910l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03586l" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12054" sboTerm="SBO:0000185" id="MAR12054" name="Vesicle Transport of Glucosylceramide from Golgi to Extracellular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12054" sboTerm="SBO:0000185" id="R_MAR12054" name="Vesicle Transport of Glucosylceramide from Golgi to Extracellular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -473959,7 +472947,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12054">
+            <rdf:Description rdf:about="#R_MAR12054">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GLUSIDEte"/>
@@ -473970,13 +472958,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01972g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01972g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01972e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01972e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12055" sboTerm="SBO:0000185" id="MAR12055" name="Endocytosis of Glucosylceramide" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12055" sboTerm="SBO:0000185" id="R_MAR12055" name="Endocytosis of Glucosylceramide" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -473984,7 +472972,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12055">
+            <rdf:Description rdf:about="#R_MAR12055">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GLUSIDEtg"/>
@@ -473995,18 +472983,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01972e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01972e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01972g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01972g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751g" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12056" sboTerm="SBO:0000185" id="MAR12056" name="Endocytosis of Glucosylceramide" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12056" sboTerm="SBO:0000185" id="R_MAR12056" name="Endocytosis of Glucosylceramide" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -474014,7 +473002,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12056">
+            <rdf:Description rdf:about="#R_MAR12056">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GLUSIDEtl"/>
@@ -474025,18 +473013,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01972e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01972e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01972l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01972l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751l" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12057" sboTerm="SBO:0000185" id="MAR12057" name="Ganglioside Gm1 Endocytosis" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12057" sboTerm="SBO:0000185" id="R_MAR12057" name="Ganglioside Gm1 Endocytosis" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -474044,7 +473032,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12057">
+            <rdf:Description rdf:about="#R_MAR12057">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GM1tg"/>
@@ -474055,13 +473043,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03635e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03635e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03635g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03635g" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12058" sboTerm="SBO:0000185" id="MAR12058" name="Ganglioside Gm1 Endocytosis" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12058" sboTerm="SBO:0000185" id="R_MAR12058" name="Ganglioside Gm1 Endocytosis" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -474069,7 +473057,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12058">
+            <rdf:Description rdf:about="#R_MAR12058">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GM1tl"/>
@@ -474080,13 +473068,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03635e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03635e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03635l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03635l" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12059" sboTerm="SBO:0000185" id="MAR12059" name="Ganglioside Gm2 Endocytosis" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12059" sboTerm="SBO:0000185" id="R_MAR12059" name="Ganglioside Gm2 Endocytosis" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -474094,7 +473082,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12059">
+            <rdf:Description rdf:about="#R_MAR12059">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GM2tg"/>
@@ -474105,13 +473093,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02011e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02011e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02011g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02011g" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12060" sboTerm="SBO:0000185" id="MAR12060" name="Ganglioside Gm2 Endocytosis" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12060" sboTerm="SBO:0000185" id="R_MAR12060" name="Ganglioside Gm2 Endocytosis" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -474119,7 +473107,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12060">
+            <rdf:Description rdf:about="#R_MAR12060">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GM2tl"/>
@@ -474130,13 +473118,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02011e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02011e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02011l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02011l" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12061" sboTerm="SBO:0000176" id="MAR12061" name="Hexosaminidase A, Lysosomal" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12061" sboTerm="SBO:0000176" id="R_MAR12061" name="Hexosaminidase A, Lysosomal" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -474144,7 +473132,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12061">
+            <rdf:Description rdf:about="#R_MAR12061">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/HEXA1l"/>
@@ -474155,12 +473143,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02011l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02011l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02015l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02525l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02015l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02525l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -474170,7 +473158,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12062" sboTerm="SBO:0000176" id="MAR12062" name="Hexosaminidase A, Lysosomal" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12062" sboTerm="SBO:0000176" id="R_MAR12062" name="Hexosaminidase A, Lysosomal" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -474178,7 +473166,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12062">
+            <rdf:Description rdf:about="#R_MAR12062">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/HEXA2l"/>
@@ -474189,12 +473177,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01946l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01946l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02525l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01947l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02525l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01947l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -474204,7 +473192,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12063" sboTerm="SBO:0000176" id="MAR12063" name="Hexosaminidase A, Plasma Membrane" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12063" sboTerm="SBO:0000176" id="R_MAR12063" name="Hexosaminidase A, Plasma Membrane" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -474212,7 +473200,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12063">
+            <rdf:Description rdf:about="#R_MAR12063">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/HEXA3e"/>
@@ -474223,12 +473211,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02011e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02011e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02525e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02015e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02525e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02015e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -474238,7 +473226,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12064" sboTerm="SBO:0000176" id="MAR12064" name="Hexosaminidase A;Lysosomal Or Hexosaminidase B;Lysosomal" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12064" sboTerm="SBO:0000176" id="R_MAR12064" name="Hexosaminidase A;Lysosomal Or Hexosaminidase B;Lysosomal" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -474246,7 +473234,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12064">
+            <rdf:Description rdf:about="#R_MAR12064">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/HEXAHBl"/>
@@ -474257,12 +473245,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01905l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01905l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02525l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03586l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02525l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03586l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -474272,7 +473260,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12065" sboTerm="SBO:0000176" id="MAR12065" name="Sialidase, Lysosomal (Neu1)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12065" sboTerm="SBO:0000176" id="R_MAR12065" name="Sialidase, Lysosomal (Neu1)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -474280,7 +473268,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12065">
+            <rdf:Description rdf:about="#R_MAR12065">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/NEU11l"/>
@@ -474291,18 +473279,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02015l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02015l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02543l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03586l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02543l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03586l" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Ect3"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12069" sboTerm="SBO:0000176" id="MAR12069" name="Sialidase, Plasma Membrane (Neu3)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12069" sboTerm="SBO:0000176" id="R_MAR12069" name="Sialidase, Plasma Membrane (Neu3)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -474310,7 +473298,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12069">
+            <rdf:Description rdf:about="#R_MAR12069">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/NEU310e"/>
@@ -474321,15 +473309,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01945e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01945e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02543e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02010e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02543e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02010e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12080" sboTerm="SBO:0000176" id="MAR12080" name="Sphingomyelin Synthase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12080" sboTerm="SBO:0000176" id="R_MAR12080" name="Sphingomyelin Synthase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -474337,7 +473325,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12080">
+            <rdf:Description rdf:about="#R_MAR12080">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/SMSn"/>
@@ -474348,15 +473336,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01430n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02684n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01430n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02684n" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02908n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00235n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02908n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00235n" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12081" sboTerm="SBO:0000176" id="MAR12081" name="Sphingosine Kinase 1" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12081" sboTerm="SBO:0000176" id="R_MAR12081" name="Sphingosine Kinase 1" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -474364,7 +473352,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12081">
+            <rdf:Description rdf:about="#R_MAR12081">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/SPHK11"/>
@@ -474375,19 +473363,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02749c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02749c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03883c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03883c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Sk1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12082" sboTerm="SBO:0000176" id="MAR12082" name="Sphingosine Kinase 2" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12082" sboTerm="SBO:0000176" id="R_MAR12082" name="Sphingosine Kinase 2" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -474395,7 +473383,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12082">
+            <rdf:Description rdf:about="#R_MAR12082">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/SPHK21n"/>
@@ -474406,13 +473394,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02929n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02929n" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02930n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02930n" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -474421,7 +473409,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12083" sboTerm="SBO:0000176" id="MAR12083" name="Sphingosine Kinase 2" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12083" sboTerm="SBO:0000176" id="R_MAR12083" name="Sphingosine Kinase 2" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -474429,7 +473417,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12083">
+            <rdf:Description rdf:about="#R_MAR12083">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/SPHK22n"/>
@@ -474440,13 +473428,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02927n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02927n" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039n" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02928n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02928n" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -474455,7 +473443,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12084" sboTerm="SBO:0000185" id="MAR12084" name="Vesicle Transport of Sphingomyelin from Golgi to Extracellular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12084" sboTerm="SBO:0000185" id="R_MAR12084" name="Vesicle Transport of Sphingomyelin from Golgi to Extracellular" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -474463,7 +473451,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12084">
+            <rdf:Description rdf:about="#R_MAR12084">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/SPHMYLNte"/>
@@ -474474,13 +473462,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02908g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02908g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02908e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02908e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12085" sboTerm="SBO:0000185" id="MAR12085" name="Endocytosis of Sphingomyelin" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12085" sboTerm="SBO:0000185" id="R_MAR12085" name="Endocytosis of Sphingomyelin" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -474488,7 +473476,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12085">
+            <rdf:Description rdf:about="#R_MAR12085">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/SPHMYLNtl2"/>
@@ -474499,18 +473487,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02908e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02908e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751l" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02908l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02908l" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12088" sboTerm="SBO:0000185" id="MAR12088" name="Nitrite Dioxide Transport, Assumed Diffusion" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12088" sboTerm="SBO:0000185" id="R_MAR12088" name="Nitrite Dioxide Transport, Assumed Diffusion" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -474518,7 +473506,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12088">
+            <rdf:Description rdf:about="#R_MAR12088">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/NO2t2r"/>
@@ -474532,15 +473520,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02588e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02588e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02588c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02588c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12089" sboTerm="SBO:0000185" id="MAR12089" name="Ammonia Er Transport, Diffusion" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12089" sboTerm="SBO:0000185" id="R_MAR12089" name="Ammonia Er Transport, Diffusion" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -474548,7 +473536,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12089">
+            <rdf:Description rdf:about="#R_MAR12089">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/NH4tr"/>
@@ -474561,13 +473549,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02579c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02579c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02579r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02579r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12090" sboTerm="SBO:0000185" id="MAR12090" name="Omega Hydroxy Testosterone Transport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12090" sboTerm="SBO:0000185" id="R_MAR12090" name="Omega Hydroxy Testosterone Transport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -474575,7 +473563,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12090">
+            <rdf:Description rdf:about="#R_MAR12090">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/WHTSTSTERONEtr"/>
@@ -474586,13 +473574,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00432c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00432c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00432r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00432r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12091" sboTerm="SBO:0000185" id="MAR12091" name="UDPgalactose Transport (Nuclear)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12091" sboTerm="SBO:0000185" id="R_MAR12091" name="UDPgalactose Transport (Nuclear)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -474600,7 +473588,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12091">
+            <rdf:Description rdf:about="#R_MAR12091">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/UDPGALt2n"/>
@@ -474611,13 +473599,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03107c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03107c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03107n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03107n" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12092" sboTerm="SBO:0000185" id="MAR12092" name="UDPgalactose Transport, Endoplasmatic Reticulum" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12092" sboTerm="SBO:0000185" id="R_MAR12092" name="UDPgalactose Transport, Endoplasmatic Reticulum" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -474625,7 +473613,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12092">
+            <rdf:Description rdf:about="#R_MAR12092">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/UDPGALt2r"/>
@@ -474636,13 +473624,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03107c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03107c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03107r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03107r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12093" sboTerm="SBO:0000185" id="MAR12093" name="Fatty Acid Intracellular Transport, Mitochondrial" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12093" sboTerm="SBO:0000185" id="R_MAR12093" name="Fatty Acid Intracellular Transport, Mitochondrial" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -474650,7 +473638,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12093">
+            <rdf:Description rdf:about="#R_MAR12093">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/TETTET6COAtm"/>
@@ -474661,13 +473649,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00131c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00131c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00131m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00131m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12094" sboTerm="SBO:0000185" id="MAR12094" name="Fatty Acid Intracellular Transport, Mitochondrial" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12094" sboTerm="SBO:0000185" id="R_MAR12094" name="Fatty Acid Intracellular Transport, Mitochondrial" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -474675,7 +473663,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12094">
+            <rdf:Description rdf:about="#R_MAR12094">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/TETPENT6COAtm"/>
@@ -474686,13 +473674,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00110c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00110c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00110m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00110m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12095" sboTerm="SBO:0000185" id="MAR12095" name="Fatty Acid Intracellular Transport, Mitochondrial" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12095" sboTerm="SBO:0000185" id="R_MAR12095" name="Fatty Acid Intracellular Transport, Mitochondrial" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -474700,7 +473688,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12095">
+            <rdf:Description rdf:about="#R_MAR12095">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/TETPENT3COAtm"/>
@@ -474711,13 +473699,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00134c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00134c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00134m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00134m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12096" sboTerm="SBO:0000185" id="MAR12096" name="Phosphatidylcholine Scramblase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12096" sboTerm="SBO:0000185" id="R_MAR12096" name="Phosphatidylcholine Scramblase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -474725,7 +473713,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12096">
+            <rdf:Description rdf:about="#R_MAR12096">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PCHOL_HStn"/>
@@ -474736,13 +473724,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02684c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02684c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02684n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02684n" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12097" sboTerm="SBO:0000185" id="MAR12097" name="Choline Phosphate Intracellular Transport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12097" sboTerm="SBO:0000185" id="R_MAR12097" name="Choline Phosphate Intracellular Transport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -474750,7 +473738,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12097">
+            <rdf:Description rdf:about="#R_MAR12097">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CHOLPtn"/>
@@ -474761,13 +473749,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02738c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02738c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02738n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02738n" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12098" sboTerm="SBO:0000185" id="MAR12098" name="Phytoceramide Transport, Golgi Apparatus" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12098" sboTerm="SBO:0000185" id="R_MAR12098" name="Phytoceramide Transport, Golgi Apparatus" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -474775,7 +473763,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12098">
+            <rdf:Description rdf:about="#R_MAR12098">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PHCRMtg"/>
@@ -474786,13 +473774,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03863c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03863c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03863g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03863g" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12099" sboTerm="SBO:0000185" id="MAR12099" name="Phytoceramide Transport, Endoplasmatic Reticulum" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12099" sboTerm="SBO:0000185" id="R_MAR12099" name="Phytoceramide Transport, Endoplasmatic Reticulum" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -474800,7 +473788,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12099">
+            <rdf:Description rdf:about="#R_MAR12099">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PHCRMter"/>
@@ -474811,13 +473799,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03863c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03863c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03863r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03863r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12100" sboTerm="SBO:0000185" id="MAR12100" name="Sphinganine Intracellular Transport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12100" sboTerm="SBO:0000185" id="R_MAR12100" name="Sphinganine Intracellular Transport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -474825,7 +473813,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12100">
+            <rdf:Description rdf:about="#R_MAR12100">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/SPHGNtn"/>
@@ -474836,13 +473824,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02927c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02927c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02927n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02927n" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12101" sboTerm="SBO:0000185" id="MAR12101" name="Sphinganine Intracellular Transport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12101" sboTerm="SBO:0000185" id="R_MAR12101" name="Sphinganine Intracellular Transport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -474850,7 +473838,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12101">
+            <rdf:Description rdf:about="#R_MAR12101">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/SPHGNtg"/>
@@ -474861,13 +473849,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02927c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02927c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02927g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02927g" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12102" sboTerm="SBO:0000185" id="MAR12102" name="Sphingosine Intracellular Transport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12102" sboTerm="SBO:0000185" id="R_MAR12102" name="Sphingosine Intracellular Transport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -474875,7 +473863,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12102">
+            <rdf:Description rdf:about="#R_MAR12102">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/SPHINGStn"/>
@@ -474886,13 +473874,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02929c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02929c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02929n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02929n" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12103" sboTerm="SBO:0000185" id="MAR12103" name="Sphingosine Intracellular Transport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12103" sboTerm="SBO:0000185" id="R_MAR12103" name="Sphingosine Intracellular Transport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -474900,7 +473888,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12103">
+            <rdf:Description rdf:about="#R_MAR12103">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/SPHINGStg"/>
@@ -474911,13 +473899,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02929c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02929c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02929g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02929g" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12104" sboTerm="SBO:0000627" id="MAR12104" name="Exchange of CMP-N-Acetyl-Beta-Neuraminate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12104" sboTerm="SBO:0000627" id="R_MAR12104" name="Exchange of CMP-N-Acetyl-Beta-Neuraminate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -474925,7 +473913,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12104">
+            <rdf:Description rdf:about="#R_MAR12104">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_cmpacna_e"/>
@@ -474936,10 +473924,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01592e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01592e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12105" sboTerm="SBO:0000627" id="MAR12105" name="Exchange of Gd2" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12105" sboTerm="SBO:0000627" id="R_MAR12105" name="Exchange of Gd2" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -474947,7 +473935,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12105">
+            <rdf:Description rdf:about="#R_MAR12105">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_gd2_hs_e"/>
@@ -474958,10 +473946,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01946e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01946e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12106" sboTerm="SBO:0000627" id="MAR12106" name="Exchange of Gd1A" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12106" sboTerm="SBO:0000627" id="R_MAR12106" name="Exchange of Gd1A" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -474969,7 +473957,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12106">
+            <rdf:Description rdf:about="#R_MAR12106">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_gd1a_hs_e"/>
@@ -474980,10 +473968,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01941e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01941e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12107" sboTerm="SBO:0000185" id="MAR12107" name="Dihydroceramide Transport, Golgi Apparatus" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12107" sboTerm="SBO:0000185" id="R_MAR12107" name="Dihydroceramide Transport, Golgi Apparatus" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -474991,7 +473979,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12107">
+            <rdf:Description rdf:about="#R_MAR12107">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/DHCRMtg"/>
@@ -475002,13 +473990,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01699c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01699c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01699g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01699g" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12108" sboTerm="SBO:0000185" id="MAR12108" name="Dihydroceramide Transport, Endoplasmatic Reticulum" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12108" sboTerm="SBO:0000185" id="R_MAR12108" name="Dihydroceramide Transport, Endoplasmatic Reticulum" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -475016,7 +474004,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12108">
+            <rdf:Description rdf:about="#R_MAR12108">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/DHCRMter"/>
@@ -475027,13 +474015,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01699c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01699c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01699r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01699r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12109" sboTerm="SBO:0000185" id="MAR12109" name="Phytosphingosine Transport, from Golgi to Cytosol (Flippase?)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12109" sboTerm="SBO:0000185" id="R_MAR12109" name="Phytosphingosine Transport, from Golgi to Cytosol (Flippase?)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -475041,7 +474029,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12109">
+            <rdf:Description rdf:about="#R_MAR12109">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PHSPHINGStg"/>
@@ -475052,13 +474040,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02749g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02749g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02749c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02749c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12110" sboTerm="SBO:0000185" id="MAR12110" name="Phytosphingosine Transport, from Er to Cytosol (Flippase?)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12110" sboTerm="SBO:0000185" id="R_MAR12110" name="Phytosphingosine Transport, from Er to Cytosol (Flippase?)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -475066,7 +474054,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12110">
+            <rdf:Description rdf:about="#R_MAR12110">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PHSPHINGStr"/>
@@ -475077,13 +474065,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02749r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02749r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02749c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02749c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12111" sboTerm="SBO:0000176" id="MAR12111" name="Sphingosine-1-Phosphate Lyase 1 (Phytosphingosine-1-Phosphate, Cytosol)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12111" sboTerm="SBO:0000176" id="R_MAR12111" name="Sphingosine-1-Phosphate Lyase 1 (Phytosphingosine-1-Phosphate, Cytosol)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -475091,7 +474079,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12111">
+            <rdf:Description rdf:about="#R_MAR12111">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PHSGPL11c"/>
@@ -475102,14 +474090,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03883c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03883c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01798c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03661c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01798c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03661c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12112" sboTerm="SBO:0000185" id="MAR12112" name="Transport of L-Cysteate, Diffusion" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12112" sboTerm="SBO:0000185" id="R_MAR12112" name="Transport of L-Cysteate, Diffusion" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -475117,7 +474105,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12112">
+            <rdf:Description rdf:about="#R_MAR12112">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/LCYSTtm"/>
@@ -475127,13 +474115,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02350c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02350c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02350m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02350m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12113" sboTerm="SBO:0000185" id="MAR12113" name="Transport of 3, 4-Dihydroxyphenylethanol via Passive Diffusion" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12113" sboTerm="SBO:0000185" id="R_MAR12113" name="Transport of 3, 4-Dihydroxyphenylethanol via Passive Diffusion" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -475141,7 +474129,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12113">
+            <rdf:Description rdf:about="#R_MAR12113">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/34DHPEt"/>
@@ -475152,13 +474140,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03197e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03197e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03197c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03197c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12114" sboTerm="SBO:0000627" id="MAR12114" name="Exchange of 3, 4-Dihydroxyphenylethanol" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12114" sboTerm="SBO:0000627" id="R_MAR12114" name="Exchange of 3, 4-Dihydroxyphenylethanol" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -475166,7 +474154,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12114">
+            <rdf:Description rdf:about="#R_MAR12114">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_34dhpe_e"/>
@@ -475177,10 +474165,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03197e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03197e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12115" sboTerm="SBO:0000185" id="MAR12115" name="Galactocerebroside Intracellular Transport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12115" sboTerm="SBO:0000185" id="R_MAR12115" name="Galactocerebroside Intracellular Transport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -475188,7 +474176,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12115">
+            <rdf:Description rdf:about="#R_MAR12115">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GALSIDEter"/>
@@ -475199,13 +474187,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01679c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01679c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01679r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01679r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12116" sboTerm="SBO:0000185" id="MAR12116" name="Galactocerebroside Intracellular Transport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12116" sboTerm="SBO:0000185" id="R_MAR12116" name="Galactocerebroside Intracellular Transport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -475213,7 +474201,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12116">
+            <rdf:Description rdf:about="#R_MAR12116">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GALSIDEtn"/>
@@ -475224,13 +474212,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01679c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01679c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01679n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01679n" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12117" sboTerm="SBO:0000185" id="MAR12117" name="Ceramide Transport Protei" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12117" sboTerm="SBO:0000185" id="R_MAR12117" name="Ceramide Transport Protei" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -475238,7 +474226,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12117">
+            <rdf:Description rdf:about="#R_MAR12117">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CERT1tn"/>
@@ -475249,13 +474237,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01430c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01430c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01430n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01430n" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12118" sboTerm="SBO:0000185" id="MAR12118" name="Transport of Gd1A" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12118" sboTerm="SBO:0000185" id="R_MAR12118" name="Transport of Gd1A" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -475263,7 +474251,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12118">
+            <rdf:Description rdf:about="#R_MAR12118">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GD1Atg"/>
@@ -475274,13 +474262,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01941g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01941g" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01941c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01941c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12119" sboTerm="SBO:0000185" id="MAR12119" name="Transport of Gd1A" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12119" sboTerm="SBO:0000185" id="R_MAR12119" name="Transport of Gd1A" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -475288,7 +474276,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12119">
+            <rdf:Description rdf:about="#R_MAR12119">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GD1Atn"/>
@@ -475300,13 +474288,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01941c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01941c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01941n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01941n" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12120" sboTerm="SBO:0000185" id="MAR12120" name="ADP/ATP Transporter, Golgi" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12120" sboTerm="SBO:0000185" id="R_MAR12120" name="ADP/ATP Transporter, Golgi" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -475314,7 +474302,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12120">
+            <rdf:Description rdf:about="#R_MAR12120">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ATPtg"/>
@@ -475325,15 +474313,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01285g" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371g" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12121" sboTerm="SBO:0000185" id="MAR12121" name="Transport of Gd1B" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12121" sboTerm="SBO:0000185" id="R_MAR12121" name="Transport of Gd1B" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -475341,7 +474329,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12121">
+            <rdf:Description rdf:about="#R_MAR12121">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GD1Btl"/>
@@ -475352,13 +474340,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01943c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01943c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01943l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01943l" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12122" sboTerm="SBO:0000185" id="MAR12122" name="Transport of Gd3, Lysosomal" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12122" sboTerm="SBO:0000185" id="R_MAR12122" name="Transport of Gd3, Lysosomal" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -475366,7 +474354,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12122">
+            <rdf:Description rdf:about="#R_MAR12122">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GD3tlc"/>
@@ -475377,13 +474365,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01947l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01947l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01947c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01947c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12123" sboTerm="SBO:0000185" id="MAR12123" name="Transport of Gd3, Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12123" sboTerm="SBO:0000185" id="R_MAR12123" name="Transport of Gd3, Mitochondrial" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -475391,7 +474379,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12123">
+            <rdf:Description rdf:about="#R_MAR12123">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GD3tm"/>
@@ -475402,13 +474390,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01947c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01947c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01947m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01947m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12124" sboTerm="SBO:0000185" id="MAR12124" name="Adenosine 3&apos;, 5&apos;-Bisphosphate Lysosome Transport" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12124" sboTerm="SBO:0000185" id="R_MAR12124" name="Adenosine 3&apos;, 5&apos;-Bisphosphate Lysosome Transport" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -475416,7 +474404,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12124">
+            <rdf:Description rdf:about="#R_MAR12124">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/PAPtl"/>
@@ -475426,13 +474414,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02681l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02681l" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02681c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02681c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12125" sboTerm="SBO:0000176" id="MAR12125" name="Catalase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12125" sboTerm="SBO:0000176" id="R_MAR12125" name="Catalase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -475440,7 +474428,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12125">
+            <rdf:Description rdf:about="#R_MAR12125">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CATr"/>
@@ -475453,14 +474441,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02041r" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02041r" stoichiometry="2" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040r" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02630r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02630r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12126" sboTerm="SBO:0000185" id="MAR12126" name="Transport of De-Fuc Form of Pa6, Lysosomal" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12126" sboTerm="SBO:0000185" id="R_MAR12126" name="Transport of De-Fuc Form of Pa6, Lysosomal" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -475468,7 +474456,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12126">
+            <rdf:Description rdf:about="#R_MAR12126">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/S2L2N2M2Mtl"/>
@@ -475479,13 +474467,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01651c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01651c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01651l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01651l" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12127" sboTerm="SBO:0000627" id="MAR12127" name="Exchange of 1-Phosphatidyl-1D-Myo-Inositol" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12127" sboTerm="SBO:0000627" id="R_MAR12127" name="Exchange of 1-Phosphatidyl-1D-Myo-Inositol" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -475493,7 +474481,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12127">
+            <rdf:Description rdf:about="#R_MAR12127">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_pail_hs_e"/>
@@ -475504,10 +474492,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02750e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02750e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12128" sboTerm="SBO:0000627" id="MAR12128" name="Exchange of (12S)-12-hydroxyheptadeca-5,8,10-trienoic acid (12S-HHT)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12128" sboTerm="SBO:0000627" id="R_MAR12128" name="Exchange of (12S)-12-hydroxyheptadeca-5,8,10-trienoic acid (12S-HHT)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -475515,7 +474503,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12128">
+            <rdf:Description rdf:about="#R_MAR12128">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_CE1243_e"/>
@@ -475526,10 +474514,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00308e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00308e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12129" sboTerm="SBO:0000627" id="MAR12129" name="Exchange of 5-S-Glutathionyl-L-Dopa" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12129" sboTerm="SBO:0000627" id="R_MAR12129" name="Exchange of 5-S-Glutathionyl-L-Dopa" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -475537,7 +474525,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12129">
+            <rdf:Description rdf:about="#R_MAR12129">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_CE5026_e"/>
@@ -475548,10 +474536,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01139e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01139e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12130" sboTerm="SBO:0000627" id="MAR12130" name="Exchange of 5-S-Cysteinylglycine Dopa" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12130" sboTerm="SBO:0000627" id="R_MAR12130" name="Exchange of 5-S-Cysteinylglycine Dopa" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -475559,7 +474547,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12130">
+            <rdf:Description rdf:about="#R_MAR12130">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_5cysgly34dhphe_e"/>
@@ -475570,10 +474558,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03282e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03282e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12131" sboTerm="SBO:0000627" id="MAR12131" name="Exchange of 5-S-Cysteinyldopa" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12131" sboTerm="SBO:0000627" id="R_MAR12131" name="Exchange of 5-S-Cysteinyldopa" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -475581,7 +474569,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12131">
+            <rdf:Description rdf:about="#R_MAR12131">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_CE1261_e"/>
@@ -475592,10 +474580,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01134e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01134e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12132" sboTerm="SBO:0000627" id="MAR12132" name="Exchange of Galactosyl Glucosyl Ceramide" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12132" sboTerm="SBO:0000627" id="R_MAR12132" name="Exchange of Galactosyl Glucosyl Ceramide" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -475603,7 +474591,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12132">
+            <rdf:Description rdf:about="#R_MAR12132">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_galgluside_hs_e"/>
@@ -475614,10 +474602,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03586e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03586e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12133" sboTerm="SBO:0000627" id="MAR12133" name="Exchange of Gibberellin A1" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12133" sboTerm="SBO:0000627" id="R_MAR12133" name="Exchange of Gibberellin A1" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -475625,7 +474613,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12133">
+            <rdf:Description rdf:about="#R_MAR12133">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_ga1_hs_e"/>
@@ -475636,10 +474624,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01904e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01904e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12134" sboTerm="SBO:0000627" id="MAR12134" name="Exchange of Gm1Alpha" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12134" sboTerm="SBO:0000627" id="R_MAR12134" name="Exchange of Gm1Alpha" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -475647,7 +474635,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12134">
+            <rdf:Description rdf:about="#R_MAR12134">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/EX_gm1a_hs[e]"/>
@@ -475657,10 +474645,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02009e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02009e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12135" sboTerm="SBO:0000627" id="MAR12135" name="Exchange of Gm2Alpha" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12135" sboTerm="SBO:0000627" id="R_MAR12135" name="Exchange of Gm2Alpha" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -475668,7 +474656,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12135">
+            <rdf:Description rdf:about="#R_MAR12135">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/EX_gm2a_hs[e]"/>
@@ -475678,10 +474666,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02014e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02014e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12136" sboTerm="SBO:0000627" id="MAR12136" name="Exchange of Ganglioside Gm1" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12136" sboTerm="SBO:0000627" id="R_MAR12136" name="Exchange of Ganglioside Gm1" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -475689,7 +474677,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12136">
+            <rdf:Description rdf:about="#R_MAR12136">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_gm1_hs_e"/>
@@ -475700,10 +474688,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03635e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03635e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12137" sboTerm="SBO:0000627" id="MAR12137" name="Exchange of Gm1B" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12137" sboTerm="SBO:0000627" id="R_MAR12137" name="Exchange of Gm1B" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -475711,7 +474699,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12137">
+            <rdf:Description rdf:about="#R_MAR12137">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_gm1b_hs_e"/>
@@ -475722,10 +474710,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02010e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02010e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12138" sboTerm="SBO:0000627" id="MAR12138" name="Exchange of Gd1B" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12138" sboTerm="SBO:0000627" id="R_MAR12138" name="Exchange of Gd1B" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -475733,7 +474721,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12138">
+            <rdf:Description rdf:about="#R_MAR12138">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_gd1b_hs_e"/>
@@ -475744,10 +474732,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01943e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01943e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12139" sboTerm="SBO:0000627" id="MAR12139" name="Exchange of Gt1B" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12139" sboTerm="SBO:0000627" id="R_MAR12139" name="Exchange of Gt1B" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -475755,7 +474743,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12139">
+            <rdf:Description rdf:about="#R_MAR12139">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_gt1b_hs_e"/>
@@ -475766,10 +474754,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02030e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02030e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12140" sboTerm="SBO:0000629" id="MAR12140" name="HMR Biomass Renal Cancer Reaction" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB2N0">
+      <reaction metaid="R_MAR12140" sboTerm="SBO:0000629" id="R_MAR12140" name="HMR Biomass Renal Cancer Reaction" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB2N0">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -475777,7 +474765,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12140">
+            <rdf:Description rdf:about="#R_MAR12140">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.5.1.18"/>
@@ -475787,49 +474775,49 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00240c" stoichiometry="0.0031466" constant="true"/>
-          <speciesReference species="MAM00656c" stoichiometry="0.0012642" constant="true"/>
-          <speciesReference species="MAM01307c" stoichiometry="0.11871" constant="true"/>
-          <speciesReference species="MAM01365c" stoichiometry="0.0009274" constant="true"/>
-          <speciesReference species="MAM01369c" stoichiometry="0.012056" constant="true"/>
-          <speciesReference species="MAM01370c" stoichiometry="0.69277" constant="true"/>
-          <speciesReference species="MAM01450c" stoichiometry="0.0082708" constant="true"/>
-          <speciesReference species="MAM01451r" stoichiometry="0.0065713" constant="true"/>
-          <speciesReference species="MAM01589c" stoichiometry="0.00057356" constant="true"/>
-          <speciesReference species="MAM01628c" stoichiometry="0.0012056" constant="true"/>
-          <speciesReference species="MAM01721n" stoichiometry="0.007581" constant="true"/>
-          <speciesReference species="MAM01974c" stoichiometry="0.16786" constant="true"/>
-          <speciesReference species="MAM01975c" stoichiometry="0.19104" constant="true"/>
-          <speciesReference species="MAM01986c" stoichiometry="0.13911" constant="true"/>
-          <speciesReference species="MAM02125c" stoichiometry="0.028749" constant="true"/>
-          <speciesReference species="MAM02184c" stoichiometry="0.0037096" constant="true"/>
-          <speciesReference species="MAM02360c" stoichiometry="0.011129" constant="true"/>
-          <speciesReference species="MAM02426c" stoichiometry="0.009274" constant="true"/>
-          <speciesReference species="MAM02471c" stoichiometry="0.0018548" constant="true"/>
-          <speciesReference species="MAM02684c" stoichiometry="0.017171" constant="true"/>
-          <speciesReference species="MAM02685c" stoichiometry="0.020051" constant="true"/>
-          <speciesReference species="MAM02724c" stoichiometry="0.0037096" constant="true"/>
-          <speciesReference species="MAM02733c" stoichiometry="0.016414" constant="true"/>
-          <speciesReference species="MAM02750c" stoichiometry="0.0030972" constant="true"/>
-          <speciesReference species="MAM02770c" stoichiometry="0.017992" constant="true"/>
-          <speciesReference species="MAM02808c" stoichiometry="0.005891" constant="true"/>
-          <speciesReference species="MAM02847c" stoichiometry="0.0308145" constant="true"/>
-          <speciesReference species="MAM02896c" stoichiometry="0.037096" constant="true"/>
-          <speciesReference species="MAM02908c" stoichiometry="0.0024143" constant="true"/>
-          <speciesReference species="MAM02958c" stoichiometry="0.027482" constant="true"/>
-          <speciesReference species="MAM02993c" stoichiometry="0.020403" constant="true"/>
-          <speciesReference species="MAM03089c" stoichiometry="0.0009274" constant="true"/>
-          <speciesReference species="MAM03101c" stoichiometry="0.0055644" constant="true"/>
-          <speciesReference species="MAM03135c" stoichiometry="0.012056" constant="true"/>
-          <speciesReference species="MAM03161c" stoichiometry="0.26551" constant="true"/>
-          <speciesReference species="MAM01602c" stoichiometry="0.001" constant="true"/>
-          <speciesReference species="MAM10006c" stoichiometry="0.0038601" constant="true"/>
+          <speciesReference species="M_MAM00240c" stoichiometry="0.0031466" constant="true"/>
+          <speciesReference species="M_MAM00656c" stoichiometry="0.0012642" constant="true"/>
+          <speciesReference species="M_MAM01307c" stoichiometry="0.11871" constant="true"/>
+          <speciesReference species="M_MAM01365c" stoichiometry="0.0009274" constant="true"/>
+          <speciesReference species="M_MAM01369c" stoichiometry="0.012056" constant="true"/>
+          <speciesReference species="M_MAM01370c" stoichiometry="0.69277" constant="true"/>
+          <speciesReference species="M_MAM01450c" stoichiometry="0.0082708" constant="true"/>
+          <speciesReference species="M_MAM01451r" stoichiometry="0.0065713" constant="true"/>
+          <speciesReference species="M_MAM01589c" stoichiometry="0.00057356" constant="true"/>
+          <speciesReference species="M_MAM01628c" stoichiometry="0.0012056" constant="true"/>
+          <speciesReference species="M_MAM01721n" stoichiometry="0.007581" constant="true"/>
+          <speciesReference species="M_MAM01974c" stoichiometry="0.16786" constant="true"/>
+          <speciesReference species="M_MAM01975c" stoichiometry="0.19104" constant="true"/>
+          <speciesReference species="M_MAM01986c" stoichiometry="0.13911" constant="true"/>
+          <speciesReference species="M_MAM02125c" stoichiometry="0.028749" constant="true"/>
+          <speciesReference species="M_MAM02184c" stoichiometry="0.0037096" constant="true"/>
+          <speciesReference species="M_MAM02360c" stoichiometry="0.011129" constant="true"/>
+          <speciesReference species="M_MAM02426c" stoichiometry="0.009274" constant="true"/>
+          <speciesReference species="M_MAM02471c" stoichiometry="0.0018548" constant="true"/>
+          <speciesReference species="M_MAM02684c" stoichiometry="0.017171" constant="true"/>
+          <speciesReference species="M_MAM02685c" stoichiometry="0.020051" constant="true"/>
+          <speciesReference species="M_MAM02724c" stoichiometry="0.0037096" constant="true"/>
+          <speciesReference species="M_MAM02733c" stoichiometry="0.016414" constant="true"/>
+          <speciesReference species="M_MAM02750c" stoichiometry="0.0030972" constant="true"/>
+          <speciesReference species="M_MAM02770c" stoichiometry="0.017992" constant="true"/>
+          <speciesReference species="M_MAM02808c" stoichiometry="0.005891" constant="true"/>
+          <speciesReference species="M_MAM02847c" stoichiometry="0.0308145" constant="true"/>
+          <speciesReference species="M_MAM02896c" stoichiometry="0.037096" constant="true"/>
+          <speciesReference species="M_MAM02908c" stoichiometry="0.0024143" constant="true"/>
+          <speciesReference species="M_MAM02958c" stoichiometry="0.027482" constant="true"/>
+          <speciesReference species="M_MAM02993c" stoichiometry="0.020403" constant="true"/>
+          <speciesReference species="M_MAM03089c" stoichiometry="0.0009274" constant="true"/>
+          <speciesReference species="M_MAM03101c" stoichiometry="0.0055644" constant="true"/>
+          <speciesReference species="M_MAM03135c" stoichiometry="0.012056" constant="true"/>
+          <speciesReference species="M_MAM03161c" stoichiometry="0.26551" constant="true"/>
+          <speciesReference species="M_MAM01602c" stoichiometry="0.001" constant="true"/>
+          <speciesReference species="M_MAM10006c" stoichiometry="0.0038601" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03970c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03970c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12141" sboTerm="SBO:0000627" id="MAR12141" name="Exchange of Nicotinamide Adenine Dinucleotide - Reduced" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12141" sboTerm="SBO:0000627" id="R_MAR12141" name="Exchange of Nicotinamide Adenine Dinucleotide - Reduced" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -475837,7 +474825,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12141">
+            <rdf:Description rdf:about="#R_MAR12141">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_nadh_e"/>
@@ -475848,10 +474836,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02553e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12142" sboTerm="SBO:0000185" id="MAR12142" name="12-Dehydrocholic acid ABC bile acid transporter" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12142" sboTerm="SBO:0000185" id="R_MAR12142" name="12-Dehydrocholic acid ABC bile acid transporter" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -475860,7 +474848,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12142">
+            <rdf:Description rdf:about="#R_MAR12142">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/12DHCHOLabc"/>
@@ -475871,15 +474859,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00517c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00517c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00517e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00517e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -475890,7 +474878,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12143" sboTerm="SBO:0000185" id="MAR12143" name="12-Dehydrocholic acid transport via bicarbonate countertransport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12143" sboTerm="SBO:0000185" id="R_MAR12143" name="12-Dehydrocholic acid transport via bicarbonate countertransport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -475899,7 +474887,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12143">
+            <rdf:Description rdf:about="#R_MAR12143">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/12DHCHOLt"/>
@@ -475910,12 +474898,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00517e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00517e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00517c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00517c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -475928,7 +474916,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12144" sboTerm="SBO:0000185" id="MAR12144" name="12-Dehydrocholic acid transport via sodium cotransport" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12144" sboTerm="SBO:0000185" id="R_MAR12144" name="12-Dehydrocholic acid transport via sodium cotransport" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -475937,7 +474925,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12144">
+            <rdf:Description rdf:about="#R_MAR12144">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/12DHCHOLt2"/>
@@ -475948,12 +474936,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02519e" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM00517e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM00517e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02519c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM00517c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM00517c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -475962,7 +474950,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12145" sboTerm="SBO:0000176" id="MAR12145" name="3-dehydrocholic acid formation" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12145" sboTerm="SBO:0000176" id="R_MAR12145" name="3-dehydrocholic acid formation" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -475971,7 +474959,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12145">
+            <rdf:Description rdf:about="#R_MAR12145">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.13.97"/>
@@ -475983,15 +474971,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01445c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01445c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03207c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03207c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -476000,7 +474988,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12146" sboTerm="SBO:0000176" id="MAR12146" name="3-dehydro-chenodehydroxycholic acid formation" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12146" sboTerm="SBO:0000176" id="R_MAR12146" name="3-dehydro-chenodehydroxycholic acid formation" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -476009,7 +474997,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12146">
+            <rdf:Description rdf:about="#R_MAR12146">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.13.97"/>
@@ -476021,15 +475009,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03318c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03318c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03206c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03206c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -476038,7 +475026,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12147" sboTerm="SBO:0000185" id="MAR12147" name="3-Dehydrochenodeoxycholic acid ABC bile acid transporter" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12147" sboTerm="SBO:0000185" id="R_MAR12147" name="3-Dehydrochenodeoxycholic acid ABC bile acid transporter" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -476047,7 +475035,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12147">
+            <rdf:Description rdf:about="#R_MAR12147">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/3DHCDCHOLabc"/>
@@ -476058,15 +475046,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03206c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03206c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03206e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03206e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -476077,7 +475065,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12148" sboTerm="SBO:0000185" id="MAR12148" name="3-Dehydrochenodeoxycholic acid transport via bicarbonate countertransport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12148" sboTerm="SBO:0000185" id="R_MAR12148" name="3-Dehydrochenodeoxycholic acid transport via bicarbonate countertransport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -476086,7 +475074,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12148">
+            <rdf:Description rdf:about="#R_MAR12148">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/3DHCDCHOLt"/>
@@ -476097,12 +475085,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03206e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03206e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03206c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03206c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -476115,7 +475103,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12149" sboTerm="SBO:0000185" id="MAR12149" name="3-Dehydrochenodeoxycholic acid transport via sodium cotransport" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12149" sboTerm="SBO:0000185" id="R_MAR12149" name="3-Dehydrochenodeoxycholic acid transport via sodium cotransport" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -476124,7 +475112,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12149">
+            <rdf:Description rdf:about="#R_MAR12149">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/3DHCDCHOLt2"/>
@@ -476135,12 +475123,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02519e" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03206e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03206e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02519c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03206c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03206c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -476149,7 +475137,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12150" sboTerm="SBO:0000185" id="MAR12150" name="3-Dehydrocholic acid  ABC bile acid transporter" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12150" sboTerm="SBO:0000185" id="R_MAR12150" name="3-Dehydrocholic acid  ABC bile acid transporter" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -476158,7 +475146,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12150">
+            <rdf:Description rdf:about="#R_MAR12150">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/3DHCHOLabc"/>
@@ -476169,15 +475157,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03207c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03207c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03207e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03207e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -476188,7 +475176,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12151" sboTerm="SBO:0000185" id="MAR12151" name="3-Dehydrocholic acid  transport via bicarbonate countertransport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12151" sboTerm="SBO:0000185" id="R_MAR12151" name="3-Dehydrocholic acid  transport via bicarbonate countertransport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -476197,7 +475185,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12151">
+            <rdf:Description rdf:about="#R_MAR12151">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/3DHCHOLt"/>
@@ -476208,12 +475196,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03207e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03207e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03207c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03207c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -476226,7 +475214,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12152" sboTerm="SBO:0000185" id="MAR12152" name="3-Dehydrocholic acid  transport via sodium cotransport" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12152" sboTerm="SBO:0000185" id="R_MAR12152" name="3-Dehydrocholic acid  transport via sodium cotransport" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -476235,7 +475223,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12152">
+            <rdf:Description rdf:about="#R_MAR12152">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/3DHCHOLt2"/>
@@ -476246,12 +475234,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02519e" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03207e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03207e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02519c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03207c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03207c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -476260,7 +475248,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12153" sboTerm="SBO:0000185" id="MAR12153" name="3-dehydro-deoxycholic acid ABC bile acid transporter" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12153" sboTerm="SBO:0000185" id="R_MAR12153" name="3-dehydro-deoxycholic acid ABC bile acid transporter" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -476269,7 +475257,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12153">
+            <rdf:Description rdf:about="#R_MAR12153">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/3DHDCAabc"/>
@@ -476280,15 +475268,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03208c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03208c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03208e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03208e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -476297,7 +475285,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12154" sboTerm="SBO:0000176" id="MAR12154" name="3-dehydro-deoxycholic acid formation" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12154" sboTerm="SBO:0000176" id="R_MAR12154" name="3-dehydro-deoxycholic acid formation" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -476306,7 +475294,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12154">
+            <rdf:Description rdf:about="#R_MAR12154">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.13.97"/>
@@ -476318,15 +475306,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00745c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00745c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03208c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03208c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -476335,7 +475323,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12155" sboTerm="SBO:0000185" id="MAR12155" name="3-dehydro-deoxycholic acid transport via bicarbonate countertransport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12155" sboTerm="SBO:0000185" id="R_MAR12155" name="3-dehydro-deoxycholic acid transport via bicarbonate countertransport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -476344,7 +475332,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12155">
+            <rdf:Description rdf:about="#R_MAR12155">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/3DHDCAt"/>
@@ -476355,12 +475343,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03208e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03208e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03208c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03208c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -476373,7 +475361,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12156" sboTerm="SBO:0000185" id="MAR12156" name="3-dehydro-deoxycholic acid transport via sodium cotransport" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12156" sboTerm="SBO:0000185" id="R_MAR12156" name="3-dehydro-deoxycholic acid transport via sodium cotransport" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -476382,7 +475370,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12156">
+            <rdf:Description rdf:about="#R_MAR12156">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/3DHDCAt2"/>
@@ -476393,12 +475381,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02519e" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03208e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03208e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02519c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03208c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03208c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -476407,7 +475395,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12157" sboTerm="SBO:0000185" id="MAR12157" name="3-dehydro-lithocholic acid ABC bile acid transporter" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12157" sboTerm="SBO:0000185" id="R_MAR12157" name="3-dehydro-lithocholic acid ABC bile acid transporter" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -476416,7 +475404,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12157">
+            <rdf:Description rdf:about="#R_MAR12157">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/3DHLCAabc"/>
@@ -476427,15 +475415,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03209c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03209c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03209e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03209e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -476444,7 +475432,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12158" sboTerm="SBO:0000176" id="MAR12158" name="3-dehydro-lithocholic acid formation" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12158" sboTerm="SBO:0000176" id="R_MAR12158" name="3-dehydro-lithocholic acid formation" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -476453,7 +475441,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12158">
+            <rdf:Description rdf:about="#R_MAR12158">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.13.97"/>
@@ -476465,15 +475453,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02402c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02402c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03209c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03209c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -476482,7 +475470,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12159" sboTerm="SBO:0000185" id="MAR12159" name="3-dehydro-lithocholic acid transport via bicarbonate countertransport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12159" sboTerm="SBO:0000185" id="R_MAR12159" name="3-dehydro-lithocholic acid transport via bicarbonate countertransport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -476491,7 +475479,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12159">
+            <rdf:Description rdf:about="#R_MAR12159">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/3DHLCAt"/>
@@ -476502,12 +475490,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03209e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03209e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03209c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03209c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -476520,7 +475508,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12160" sboTerm="SBO:0000185" id="MAR12160" name="3-dehydro-lithocholic acid transport via sodium cotransport" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12160" sboTerm="SBO:0000185" id="R_MAR12160" name="3-dehydro-lithocholic acid transport via sodium cotransport" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -476529,7 +475517,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12160">
+            <rdf:Description rdf:about="#R_MAR12160">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/3DHLCAt2"/>
@@ -476540,12 +475528,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02519e" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03209e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03209e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02519c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03209c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03209c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -476554,7 +475542,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12161" sboTerm="SBO:0000185" id="MAR12161" name="7-Dehydrochenodeoxycholic acid ABC bile acid transporter" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12161" sboTerm="SBO:0000185" id="R_MAR12161" name="7-Dehydrochenodeoxycholic acid ABC bile acid transporter" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -476563,7 +475551,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12161">
+            <rdf:Description rdf:about="#R_MAR12161">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/7DHCDCHOLabc"/>
@@ -476574,15 +475562,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03310c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03310c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03310e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03310e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -476593,7 +475581,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12162" sboTerm="SBO:0000185" id="MAR12162" name="7-Dehydrochenodeoxycholic acid transport via bicarbonate countertransport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12162" sboTerm="SBO:0000185" id="R_MAR12162" name="7-Dehydrochenodeoxycholic acid transport via bicarbonate countertransport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -476602,7 +475590,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12162">
+            <rdf:Description rdf:about="#R_MAR12162">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/7DHCDCHOLt"/>
@@ -476613,12 +475601,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03310e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03310e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03310c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03310c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -476631,7 +475619,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12163" sboTerm="SBO:0000185" id="MAR12163" name="7-Dehydrochenodeoxycholic acid transport via sodium cotransport" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12163" sboTerm="SBO:0000185" id="R_MAR12163" name="7-Dehydrochenodeoxycholic acid transport via sodium cotransport" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -476640,7 +475628,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12163">
+            <rdf:Description rdf:about="#R_MAR12163">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/7DHCDCHOLt2"/>
@@ -476651,12 +475639,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02519e" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03310e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03310e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02519c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03310c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03310c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -476665,7 +475653,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12164" sboTerm="SBO:0000185" id="MAR12164" name="7-Dehydrocholic acid ABC bile acid transporter" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12164" sboTerm="SBO:0000185" id="R_MAR12164" name="7-Dehydrocholic acid ABC bile acid transporter" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -476674,7 +475662,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12164">
+            <rdf:Description rdf:about="#R_MAR12164">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/7DHCHOLabc"/>
@@ -476685,15 +475673,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03311c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03311c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03311e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03311e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -476704,7 +475692,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12165" sboTerm="SBO:0000185" id="MAR12165" name="7-Dehydrocholic acid transport via bicarbonate countertransport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12165" sboTerm="SBO:0000185" id="R_MAR12165" name="7-Dehydrocholic acid transport via bicarbonate countertransport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -476713,7 +475701,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12165">
+            <rdf:Description rdf:about="#R_MAR12165">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/7DHCHOLt"/>
@@ -476724,12 +475712,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03311e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03311e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03311c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03311c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -476742,7 +475730,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12166" sboTerm="SBO:0000185" id="MAR12166" name="7-Dehydrocholic acid transport via sodium cotransport" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12166" sboTerm="SBO:0000185" id="R_MAR12166" name="7-Dehydrocholic acid transport via sodium cotransport" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -476751,7 +475739,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12166">
+            <rdf:Description rdf:about="#R_MAR12166">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/7DHCHOLt2"/>
@@ -476762,12 +475750,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02519e" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03311e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03311e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02519c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03311c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03311c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -476776,7 +475764,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12169" sboTerm="SBO:0000185" id="MAR12169" name="Glucuronidated bile acid excretion (CA-24G)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12169" sboTerm="SBO:0000185" id="R_MAR12169" name="Glucuronidated bile acid excretion (CA-24G)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -476785,7 +475773,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12169">
+            <rdf:Description rdf:about="#R_MAR12169">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CA24Gte"/>
@@ -476796,15 +475784,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03503c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03503c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03503e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03503e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -476813,7 +475801,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12170" sboTerm="SBO:0000185" id="MAR12170" name="Glucuronidated Compound Transport (CA-24G)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12170" sboTerm="SBO:0000185" id="R_MAR12170" name="Glucuronidated Compound Transport (CA-24G)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -476821,7 +475809,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12170">
+            <rdf:Description rdf:about="#R_MAR12170">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CA24Gtr"/>
@@ -476832,13 +475820,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03503c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03503c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03503r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03503r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12171" sboTerm="SBO:0000185" id="MAR12171" name="Cholic acid 3-sulfate ABC bile acid transporter" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12171" sboTerm="SBO:0000185" id="R_MAR12171" name="Cholic acid 3-sulfate ABC bile acid transporter" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -476847,7 +475835,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12171">
+            <rdf:Description rdf:about="#R_MAR12171">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CA3Sabc"/>
@@ -476858,15 +475846,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03504c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03504c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03504e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03504e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -476877,7 +475865,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12172" sboTerm="SBO:0000185" id="MAR12172" name="Cholic acid 3-sulfate transport via bicarbonate countertransport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12172" sboTerm="SBO:0000185" id="R_MAR12172" name="Cholic acid 3-sulfate transport via bicarbonate countertransport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -476886,7 +475874,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12172">
+            <rdf:Description rdf:about="#R_MAR12172">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CA3St"/>
@@ -476897,12 +475885,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03504e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03504e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03504c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03504c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -476914,7 +475902,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12173" sboTerm="SBO:0000176" id="MAR12173" name="Cholic acid sulfotransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12173" sboTerm="SBO:0000176" id="R_MAR12173" name="Cholic acid sulfotransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -476923,7 +475911,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12173">
+            <rdf:Description rdf:about="#R_MAR12173">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.8.2.14"/>
@@ -476935,19 +475923,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01445c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02682c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01445c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02682c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02681c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03504c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02681c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03504c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="St2"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12174" sboTerm="SBO:0000176" id="MAR12174" name="UDP-Glucuronosyltransferase (UGT) cytosolic (chenodeoxycholic acid)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12174" sboTerm="SBO:0000176" id="R_MAR12174" name="UDP-Glucuronosyltransferase (UGT) cytosolic (chenodeoxycholic acid)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -476956,7 +475944,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12174">
+            <rdf:Description rdf:about="#R_MAR12174">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.17"/>
@@ -476968,12 +475956,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03109c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03318c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03109c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03318c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03106c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03508c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03508c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -476990,7 +475978,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12175" sboTerm="SBO:0000176" id="MAR12175" name="UDP-Glucuronosyltransferase (UGT) (chenodeoxycholic acid)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12175" sboTerm="SBO:0000176" id="R_MAR12175" name="UDP-Glucuronosyltransferase (UGT) (chenodeoxycholic acid)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -476999,7 +475987,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12175">
+            <rdf:Description rdf:about="#R_MAR12175">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.17"/>
@@ -477011,12 +475999,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03109r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03318r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03109r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03318r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03106r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03508r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03508r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -477033,7 +476021,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12176" sboTerm="SBO:0000185" id="MAR12176" name="Glucuronidated bile acid excretion (CDCA-24G)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12176" sboTerm="SBO:0000185" id="R_MAR12176" name="Glucuronidated bile acid excretion (CDCA-24G)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -477042,7 +476030,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12176">
+            <rdf:Description rdf:about="#R_MAR12176">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CDCA24Gte"/>
@@ -477053,15 +476041,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03508c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03508c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03508e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03508e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -477071,7 +476059,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12177" sboTerm="SBO:0000185" id="MAR12177" name="Glucuronidated Compound Transport (CDCA-24G)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12177" sboTerm="SBO:0000185" id="R_MAR12177" name="Glucuronidated Compound Transport (CDCA-24G)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -477079,7 +476067,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12177">
+            <rdf:Description rdf:about="#R_MAR12177">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CDCA24Gtr"/>
@@ -477090,13 +476078,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03508c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03508c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03508r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03508r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12178" sboTerm="SBO:0000176" id="MAR12178" name="UDP-Glucuronosyltransferase (UGT) cytosolic (chenodeoxycholic acid)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12178" sboTerm="SBO:0000176" id="R_MAR12178" name="UDP-Glucuronosyltransferase (UGT) cytosolic (chenodeoxycholic acid)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -477105,7 +476093,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12178">
+            <rdf:Description rdf:about="#R_MAR12178">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.17"/>
@@ -477117,12 +476105,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03109c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03318c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03109c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03318c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03106c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03509c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03509c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -477133,7 +476121,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12179" sboTerm="SBO:0000176" id="MAR12179" name="UDP-Glucuronosyltransferase (UGT) ER (chenodeoxycholic acid)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12179" sboTerm="SBO:0000176" id="R_MAR12179" name="UDP-Glucuronosyltransferase (UGT) ER (chenodeoxycholic acid)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -477142,7 +476130,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12179">
+            <rdf:Description rdf:about="#R_MAR12179">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.17"/>
@@ -477154,12 +476142,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03109r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03318r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03109r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03318r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03106r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03509r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03509r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -477170,7 +476158,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12180" sboTerm="SBO:0000185" id="MAR12180" name="Glucuronidated bile acid excretion (CDCA-3G)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12180" sboTerm="SBO:0000185" id="R_MAR12180" name="Glucuronidated bile acid excretion (CDCA-3G)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -477179,7 +476167,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12180">
+            <rdf:Description rdf:about="#R_MAR12180">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CDCA3Gte"/>
@@ -477190,15 +476178,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03509c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03509c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03509e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03509e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -477208,7 +476196,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12181" sboTerm="SBO:0000185" id="MAR12181" name="Glucuronidated Compound Transport (CDCA-3G)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12181" sboTerm="SBO:0000185" id="R_MAR12181" name="Glucuronidated Compound Transport (CDCA-3G)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -477216,7 +476204,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12181">
+            <rdf:Description rdf:about="#R_MAR12181">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CDCA3Gtr"/>
@@ -477227,13 +476215,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03509c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03509c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03509r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03509r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12182" sboTerm="SBO:0000185" id="MAR12182" name="Chenodeoxycholic acid 3-sulfate transport via bicarbonate countertransport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12182" sboTerm="SBO:0000185" id="R_MAR12182" name="Chenodeoxycholic acid 3-sulfate transport via bicarbonate countertransport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -477242,7 +476230,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12182">
+            <rdf:Description rdf:about="#R_MAR12182">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/HC02220t"/>
@@ -477253,12 +476241,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02950e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02950e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02950c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02950c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -477270,7 +476258,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12183" sboTerm="SBO:0000176" id="MAR12183" name="Chenodeoxycholic acid 6alpha-hydroxylase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12183" sboTerm="SBO:0000176" id="R_MAR12183" name="Chenodeoxycholic acid 6alpha-hydroxylase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -477279,7 +476267,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12183">
+            <rdf:Description rdf:about="#R_MAR12183">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.13.97"/>
@@ -477291,15 +476279,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03318c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03318c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03685c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03685c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -477308,7 +476296,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12184" sboTerm="SBO:0000185" id="MAR12184" name="Coprostanol ABC bile acid transporter" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12184" sboTerm="SBO:0000185" id="R_MAR12184" name="Coprostanol ABC bile acid transporter" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -477317,7 +476305,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12184">
+            <rdf:Description rdf:about="#R_MAR12184">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/COPROSTabc"/>
@@ -477328,15 +476316,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03512c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03512c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03512e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03512e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -477347,7 +476335,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12185" sboTerm="SBO:0000185" id="MAR12185" name="Coprostanol transport via bicarbonate countertransport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12185" sboTerm="SBO:0000185" id="R_MAR12185" name="Coprostanol transport via bicarbonate countertransport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -477356,7 +476344,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12185">
+            <rdf:Description rdf:about="#R_MAR12185">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/COPROSTt"/>
@@ -477367,12 +476355,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03512e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03512e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03512c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03512c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -477385,7 +476373,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12186" sboTerm="SBO:0000185" id="MAR12186" name="Coprostanol transport via sodium cotransport" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12186" sboTerm="SBO:0000185" id="R_MAR12186" name="Coprostanol transport via sodium cotransport" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -477394,7 +476382,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12186">
+            <rdf:Description rdf:about="#R_MAR12186">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/COPROSTt2"/>
@@ -477405,12 +476393,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02519e" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03512e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03512e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02519c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03512c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03512c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -477419,7 +476407,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12187" sboTerm="SBO:0000176" id="MAR12187" name="UDP-Glucuronosyltransferase (UGT) cytosolic (deoxycholic acid)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12187" sboTerm="SBO:0000176" id="R_MAR12187" name="UDP-Glucuronosyltransferase (UGT) cytosolic (deoxycholic acid)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -477428,7 +476416,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12187">
+            <rdf:Description rdf:about="#R_MAR12187">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.17"/>
@@ -477440,18 +476428,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00745c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03109c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00745c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03109c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03106c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03536c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03536c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Ugt302E1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12188" sboTerm="SBO:0000176" id="MAR12188" name="UDP-Glucuronosyltransferase (UGT) ER (deoxycholic acid)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12188" sboTerm="SBO:0000176" id="R_MAR12188" name="UDP-Glucuronosyltransferase (UGT) ER (deoxycholic acid)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -477460,7 +476448,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12188">
+            <rdf:Description rdf:about="#R_MAR12188">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.17"/>
@@ -477472,18 +476460,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00745r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03109r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00745r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03109r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03106r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03536r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03536r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Ugt302E1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12189" sboTerm="SBO:0000185" id="MAR12189" name="Glucuronidated bile acid excretion (DCA-24g)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12189" sboTerm="SBO:0000185" id="R_MAR12189" name="Glucuronidated bile acid excretion (DCA-24g)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -477492,7 +476480,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12189">
+            <rdf:Description rdf:about="#R_MAR12189">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/DCA24Gte"/>
@@ -477503,15 +476491,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03536c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03536c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03536e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03536e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -477521,7 +476509,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12190" sboTerm="SBO:0000185" id="MAR12190" name="Glucuronidated Compound Transport (DCA-24g)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12190" sboTerm="SBO:0000185" id="R_MAR12190" name="Glucuronidated Compound Transport (DCA-24g)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -477529,7 +476517,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12190">
+            <rdf:Description rdf:about="#R_MAR12190">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/DCA24Gtr"/>
@@ -477540,13 +476528,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03536c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03536c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03536r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03536r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12191" sboTerm="SBO:0000176" id="MAR12191" name="UDP-Glucuronosyltransferase (UGT) cytosolic (deoxycholic acid)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12191" sboTerm="SBO:0000176" id="R_MAR12191" name="UDP-Glucuronosyltransferase (UGT) cytosolic (deoxycholic acid)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -477555,7 +476543,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12191">
+            <rdf:Description rdf:about="#R_MAR12191">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.17"/>
@@ -477567,18 +476555,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00745c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03109c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00745c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03109c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03106c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03537c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03537c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Ugt302E1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12192" sboTerm="SBO:0000176" id="MAR12192" name="UDP-Glucuronosyltransferase (UGT) ER (deoxycholic acid)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12192" sboTerm="SBO:0000176" id="R_MAR12192" name="UDP-Glucuronosyltransferase (UGT) ER (deoxycholic acid)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -477587,7 +476575,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12192">
+            <rdf:Description rdf:about="#R_MAR12192">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.17"/>
@@ -477599,18 +476587,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00745r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03109r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00745r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03109r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03106r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03537r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03537r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Ugt302E1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12193" sboTerm="SBO:0000185" id="MAR12193" name="Glucuronidated bile acid excretion (DCA-3G)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12193" sboTerm="SBO:0000185" id="R_MAR12193" name="Glucuronidated bile acid excretion (DCA-3G)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -477619,7 +476607,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12193">
+            <rdf:Description rdf:about="#R_MAR12193">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/DCA3Gte"/>
@@ -477630,15 +476618,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03537c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03537c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03537e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03537e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -477648,7 +476636,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12194" sboTerm="SBO:0000185" id="MAR12194" name="Glucuronidated Compound Transport (DCA-3G)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12194" sboTerm="SBO:0000185" id="R_MAR12194" name="Glucuronidated Compound Transport (DCA-3G)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -477656,7 +476644,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12194">
+            <rdf:Description rdf:about="#R_MAR12194">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/DCA3Gtr"/>
@@ -477667,13 +476655,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03537c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03537c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03537r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03537r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12195" sboTerm="SBO:0000185" id="MAR12195" name="Deoxycholic acid 3-sulfate ABC bile acid transporter" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12195" sboTerm="SBO:0000185" id="R_MAR12195" name="Deoxycholic acid 3-sulfate ABC bile acid transporter" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -477682,7 +476670,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12195">
+            <rdf:Description rdf:about="#R_MAR12195">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/DCA3Sabc"/>
@@ -477693,15 +476681,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03538c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03538c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03538e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03538e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -477712,7 +476700,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12196" sboTerm="SBO:0000185" id="MAR12196" name="Deoxycholic acid 3-sulfate transport via bicarbonate countertransport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12196" sboTerm="SBO:0000185" id="R_MAR12196" name="Deoxycholic acid 3-sulfate transport via bicarbonate countertransport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -477721,7 +476709,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12196">
+            <rdf:Description rdf:about="#R_MAR12196">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/DCA3St"/>
@@ -477732,12 +476720,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03538e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03538e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03538c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03538c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -477749,7 +476737,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12197" sboTerm="SBO:0000176" id="MAR12197" name="Deoxycholic acid sulfotransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12197" sboTerm="SBO:0000176" id="R_MAR12197" name="Deoxycholic acid sulfotransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -477758,7 +476746,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12197">
+            <rdf:Description rdf:about="#R_MAR12197">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.8.2.14"/>
@@ -477770,19 +476758,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00745c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02682c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00745c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02682c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02681c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03538c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02681c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03538c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="St2"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12198" sboTerm="SBO:0000627" id="MAR12198" name="EX_12dhchol(e)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12198" sboTerm="SBO:0000627" id="R_MAR12198" name="EX_12dhchol(e)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -477790,7 +476778,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12198">
+            <rdf:Description rdf:about="#R_MAR12198">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_12dhchol_e"/>
@@ -477801,10 +476789,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00517e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00517e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12199" sboTerm="SBO:0000627" id="MAR12199" name="EX_3dhcdchol(e)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12199" sboTerm="SBO:0000627" id="R_MAR12199" name="EX_3dhcdchol(e)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -477812,7 +476800,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12199">
+            <rdf:Description rdf:about="#R_MAR12199">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_3dhcdchol_e"/>
@@ -477823,10 +476811,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03206e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03206e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12200" sboTerm="SBO:0000627" id="MAR12200" name="EX_3dhchol(e)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12200" sboTerm="SBO:0000627" id="R_MAR12200" name="EX_3dhchol(e)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -477834,7 +476822,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12200">
+            <rdf:Description rdf:about="#R_MAR12200">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_3dhchol_e"/>
@@ -477845,10 +476833,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03207e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03207e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12201" sboTerm="SBO:0000627" id="MAR12201" name="EX_3dhdchol(e)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12201" sboTerm="SBO:0000627" id="R_MAR12201" name="EX_3dhdchol(e)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -477856,7 +476844,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12201">
+            <rdf:Description rdf:about="#R_MAR12201">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_3dhdchol_e"/>
@@ -477867,10 +476855,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03208e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03208e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12202" sboTerm="SBO:0000627" id="MAR12202" name="EX_3dhlchol(e)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12202" sboTerm="SBO:0000627" id="R_MAR12202" name="EX_3dhlchol(e)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -477878,7 +476866,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12202">
+            <rdf:Description rdf:about="#R_MAR12202">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_3dhlchol_e"/>
@@ -477889,10 +476877,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03209e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03209e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12203" sboTerm="SBO:0000627" id="MAR12203" name="EX_7dhcdchol(e)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12203" sboTerm="SBO:0000627" id="R_MAR12203" name="EX_7dhcdchol(e)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -477900,7 +476888,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12203">
+            <rdf:Description rdf:about="#R_MAR12203">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_7dhcdchol_e"/>
@@ -477911,10 +476899,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03310e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03310e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12204" sboTerm="SBO:0000627" id="MAR12204" name="EX_7dhchol(e)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12204" sboTerm="SBO:0000627" id="R_MAR12204" name="EX_7dhchol(e)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -477922,7 +476910,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12204">
+            <rdf:Description rdf:about="#R_MAR12204">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_7dhchol_e"/>
@@ -477933,10 +476921,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03311e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03311e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12205" sboTerm="SBO:0000627" id="MAR12205" name="EX_ca24g(e)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12205" sboTerm="SBO:0000627" id="R_MAR12205" name="EX_ca24g(e)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -477944,7 +476932,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12205">
+            <rdf:Description rdf:about="#R_MAR12205">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_ca24g_e"/>
@@ -477955,10 +476943,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03503e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03503e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12206" sboTerm="SBO:0000627" id="MAR12206" name="EX_ca3s(e)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12206" sboTerm="SBO:0000627" id="R_MAR12206" name="EX_ca3s(e)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -477966,7 +476954,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12206">
+            <rdf:Description rdf:about="#R_MAR12206">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_ca3s_e"/>
@@ -477977,10 +476965,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03504e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03504e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12207" sboTerm="SBO:0000627" id="MAR12207" name="EX_cdca24g(e)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12207" sboTerm="SBO:0000627" id="R_MAR12207" name="EX_cdca24g(e)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -477988,7 +476976,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12207">
+            <rdf:Description rdf:about="#R_MAR12207">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_cdca24g_e"/>
@@ -477999,10 +476987,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03508e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03508e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12208" sboTerm="SBO:0000627" id="MAR12208" name="EX_cdca3g(e)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12208" sboTerm="SBO:0000627" id="R_MAR12208" name="EX_cdca3g(e)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -478010,7 +476998,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12208">
+            <rdf:Description rdf:about="#R_MAR12208">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_cdca3g_e"/>
@@ -478021,10 +477009,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03509e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03509e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12209" sboTerm="SBO:0000627" id="MAR12209" name="EX_coprost(e)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12209" sboTerm="SBO:0000627" id="R_MAR12209" name="EX_coprost(e)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -478032,7 +477020,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12209">
+            <rdf:Description rdf:about="#R_MAR12209">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_coprost_e"/>
@@ -478043,10 +477031,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03512e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03512e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12210" sboTerm="SBO:0000627" id="MAR12210" name="EX_dca24g(e)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12210" sboTerm="SBO:0000627" id="R_MAR12210" name="EX_dca24g(e)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -478054,7 +477042,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12210">
+            <rdf:Description rdf:about="#R_MAR12210">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_dca24g_e"/>
@@ -478065,10 +477053,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03536e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03536e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12211" sboTerm="SBO:0000627" id="MAR12211" name="EX_dca3g(e)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12211" sboTerm="SBO:0000627" id="R_MAR12211" name="EX_dca3g(e)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -478076,7 +477064,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12211">
+            <rdf:Description rdf:about="#R_MAR12211">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_dca3g_e"/>
@@ -478087,10 +477075,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03537e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03537e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12212" sboTerm="SBO:0000627" id="MAR12212" name="EX_dca3s(e)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12212" sboTerm="SBO:0000627" id="R_MAR12212" name="EX_dca3s(e)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -478098,7 +477086,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12212">
+            <rdf:Description rdf:about="#R_MAR12212">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_dca3s_e"/>
@@ -478109,10 +477097,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03538e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03538e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12213" sboTerm="SBO:0000627" id="MAR12213" name="EX_gca3s(e)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12213" sboTerm="SBO:0000627" id="R_MAR12213" name="EX_gca3s(e)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -478120,7 +477108,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12213">
+            <rdf:Description rdf:about="#R_MAR12213">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_gca3s_e"/>
@@ -478131,10 +477119,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03587e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03587e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12214" sboTerm="SBO:0000627" id="MAR12214" name="EX_gcdca3s(e)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12214" sboTerm="SBO:0000627" id="R_MAR12214" name="EX_gcdca3s(e)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -478142,7 +477130,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12214">
+            <rdf:Description rdf:about="#R_MAR12214">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_gcdca3s_e"/>
@@ -478153,10 +477141,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03588e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03588e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12215" sboTerm="SBO:0000627" id="MAR12215" name="EX_gdca3s(e)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12215" sboTerm="SBO:0000627" id="R_MAR12215" name="EX_gdca3s(e)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -478164,7 +477152,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12215">
+            <rdf:Description rdf:about="#R_MAR12215">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_gdca3s_e"/>
@@ -478175,10 +477163,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03589e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03589e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12216" sboTerm="SBO:0000627" id="MAR12216" name="EX_gudca3s(e)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12216" sboTerm="SBO:0000627" id="R_MAR12216" name="EX_gudca3s(e)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -478186,7 +477174,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12216">
+            <rdf:Description rdf:about="#R_MAR12216">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_gudca3s_e"/>
@@ -478197,10 +477185,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03637e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03637e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12217" sboTerm="SBO:0000627" id="MAR12217" name="EX_hca24g(e)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12217" sboTerm="SBO:0000627" id="R_MAR12217" name="EX_hca24g(e)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -478208,7 +477196,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12217">
+            <rdf:Description rdf:about="#R_MAR12217">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_hca24g_e"/>
@@ -478219,10 +477207,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03642e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03642e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12218" sboTerm="SBO:0000627" id="MAR12218" name="EX_hca6g(e)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12218" sboTerm="SBO:0000627" id="R_MAR12218" name="EX_hca6g(e)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -478230,7 +477218,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12218">
+            <rdf:Description rdf:about="#R_MAR12218">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_hca6g_e"/>
@@ -478241,10 +477229,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03643e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03643e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12219" sboTerm="SBO:0000627" id="MAR12219" name="EX_hdca24g(e)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12219" sboTerm="SBO:0000627" id="R_MAR12219" name="EX_hdca24g(e)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -478252,7 +477240,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12219">
+            <rdf:Description rdf:about="#R_MAR12219">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_hdca24g_e"/>
@@ -478263,10 +477251,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03644e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03644e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12220" sboTerm="SBO:0000627" id="MAR12220" name="EX_hdca6g(e)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12220" sboTerm="SBO:0000627" id="R_MAR12220" name="EX_hdca6g(e)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -478274,7 +477262,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12220">
+            <rdf:Description rdf:about="#R_MAR12220">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_hdca6g_e"/>
@@ -478285,10 +477273,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03645e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03645e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12221" sboTerm="SBO:0000627" id="MAR12221" name="EX_hyochol(e)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12221" sboTerm="SBO:0000627" id="R_MAR12221" name="EX_hyochol(e)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -478296,7 +477284,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12221">
+            <rdf:Description rdf:about="#R_MAR12221">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_hyochol_e"/>
@@ -478307,10 +477295,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03685e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03685e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12222" sboTerm="SBO:0000627" id="MAR12222" name="EX_icdchol(e)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12222" sboTerm="SBO:0000627" id="R_MAR12222" name="EX_icdchol(e)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -478318,7 +477306,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12222">
+            <rdf:Description rdf:about="#R_MAR12222">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_icdchol_e"/>
@@ -478329,10 +477317,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03691e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03691e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12223" sboTerm="SBO:0000627" id="MAR12223" name="EX_isochol(e)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12223" sboTerm="SBO:0000627" id="R_MAR12223" name="EX_isochol(e)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -478340,7 +477328,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12223">
+            <rdf:Description rdf:about="#R_MAR12223">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_isochol_e"/>
@@ -478351,10 +477339,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03704e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03704e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12224" sboTerm="SBO:0000627" id="MAR12224" name="EX_lca24g(e)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12224" sboTerm="SBO:0000627" id="R_MAR12224" name="EX_lca24g(e)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -478362,7 +477350,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12224">
+            <rdf:Description rdf:about="#R_MAR12224">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_lca24g_e"/>
@@ -478373,10 +477361,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03707e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03707e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12225" sboTerm="SBO:0000627" id="MAR12225" name="EX_lca3g(e)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12225" sboTerm="SBO:0000627" id="R_MAR12225" name="EX_lca3g(e)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -478384,7 +477372,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12225">
+            <rdf:Description rdf:about="#R_MAR12225">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_lca3g_e"/>
@@ -478395,10 +477383,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03708e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03708e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12226" sboTerm="SBO:0000627" id="MAR12226" name="EX_lca3s(e)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12226" sboTerm="SBO:0000627" id="R_MAR12226" name="EX_lca3s(e)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -478406,7 +477394,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12226">
+            <rdf:Description rdf:about="#R_MAR12226">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_lca3s_e"/>
@@ -478417,10 +477405,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03709e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03709e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12227" sboTerm="SBO:0000627" id="MAR12227" name="EX_tca3s(e)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12227" sboTerm="SBO:0000627" id="R_MAR12227" name="EX_tca3s(e)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -478428,7 +477416,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12227">
+            <rdf:Description rdf:about="#R_MAR12227">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_tca3s_e"/>
@@ -478439,10 +477427,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03962e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03962e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12228" sboTerm="SBO:0000627" id="MAR12228" name="EX_tcdca3s(e)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12228" sboTerm="SBO:0000627" id="R_MAR12228" name="EX_tcdca3s(e)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -478450,7 +477438,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12228">
+            <rdf:Description rdf:about="#R_MAR12228">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_tcdca3s_e"/>
@@ -478461,10 +477449,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03963e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03963e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12229" sboTerm="SBO:0000627" id="MAR12229" name="EX_tdca3s(e)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12229" sboTerm="SBO:0000627" id="R_MAR12229" name="EX_tdca3s(e)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -478472,7 +477460,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12229">
+            <rdf:Description rdf:about="#R_MAR12229">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_tdca3s_e"/>
@@ -478483,10 +477471,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03965e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03965e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12230" sboTerm="SBO:0000627" id="MAR12230" name="EX_thyochol(e)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12230" sboTerm="SBO:0000627" id="R_MAR12230" name="EX_thyochol(e)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -478494,7 +477482,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12230">
+            <rdf:Description rdf:about="#R_MAR12230">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_thyochol_e"/>
@@ -478505,10 +477493,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03996e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03996e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12231" sboTerm="SBO:0000627" id="MAR12231" name="EX_tudca3s(e)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12231" sboTerm="SBO:0000627" id="R_MAR12231" name="EX_tudca3s(e)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -478516,7 +477504,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12231">
+            <rdf:Description rdf:about="#R_MAR12231">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_tudca3s_e"/>
@@ -478527,10 +477515,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM04042e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04042e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12232" sboTerm="SBO:0000627" id="MAR12232" name="EX_uchol(e)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12232" sboTerm="SBO:0000627" id="R_MAR12232" name="EX_uchol(e)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -478538,7 +477526,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12232">
+            <rdf:Description rdf:about="#R_MAR12232">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_uchol_e"/>
@@ -478549,10 +477537,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM04057e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04057e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12233" sboTerm="SBO:0000627" id="MAR12233" name="EX_udca3s(e)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12233" sboTerm="SBO:0000627" id="R_MAR12233" name="EX_udca3s(e)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -478560,7 +477548,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12233">
+            <rdf:Description rdf:about="#R_MAR12233">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_udca3s_e"/>
@@ -478571,10 +477559,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM04058e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04058e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12234" sboTerm="SBO:0000185" id="MAR12234" name="Glycocholic acid 3-sulfate ABC bile acid transporter" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12234" sboTerm="SBO:0000185" id="R_MAR12234" name="Glycocholic acid 3-sulfate ABC bile acid transporter" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -478583,7 +477571,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12234">
+            <rdf:Description rdf:about="#R_MAR12234">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GCA3Sabc"/>
@@ -478594,15 +477582,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03587c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03587c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03587e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03587e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -478613,7 +477601,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12235" sboTerm="SBO:0000185" id="MAR12235" name="Glycocholic acid 3-sulfate transport via bicarbonate countertransport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12235" sboTerm="SBO:0000185" id="R_MAR12235" name="Glycocholic acid 3-sulfate transport via bicarbonate countertransport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -478622,7 +477610,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12235">
+            <rdf:Description rdf:about="#R_MAR12235">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GCA3St"/>
@@ -478633,12 +477621,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03587e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03587e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03587c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03587c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -478650,7 +477638,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12236" sboTerm="SBO:0000176" id="MAR12236" name="Glycocholic acid sulfotransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12236" sboTerm="SBO:0000176" id="R_MAR12236" name="Glycocholic acid sulfotransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -478659,7 +477647,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12236">
+            <rdf:Description rdf:about="#R_MAR12236">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.8.2.14"/>
@@ -478671,19 +477659,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01988c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02682c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01988c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02682c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02681c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03587c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02681c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03587c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="St2"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12237" sboTerm="SBO:0000185" id="MAR12237" name="Glycochenodeoxycholic acid 3-sulfate ABC bile acid transporter" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12237" sboTerm="SBO:0000185" id="R_MAR12237" name="Glycochenodeoxycholic acid 3-sulfate ABC bile acid transporter" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -478692,7 +477680,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12237">
+            <rdf:Description rdf:about="#R_MAR12237">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GCDCA3Sabc"/>
@@ -478703,15 +477691,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03588c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03588c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03588e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03588e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -478722,7 +477710,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12238" sboTerm="SBO:0000185" id="MAR12238" name="Glycochenodeoxycholic acid 3-sulfate via bicarbonate countertransport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12238" sboTerm="SBO:0000185" id="R_MAR12238" name="Glycochenodeoxycholic acid 3-sulfate via bicarbonate countertransport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -478731,7 +477719,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12238">
+            <rdf:Description rdf:about="#R_MAR12238">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GCDCA3St"/>
@@ -478742,12 +477730,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03588e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03588e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03588c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03588c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -478759,7 +477747,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12239" sboTerm="SBO:0000176" id="MAR12239" name="Glycochenodeoxycholic acid sulfotransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12239" sboTerm="SBO:0000176" id="R_MAR12239" name="Glycochenodeoxycholic acid sulfotransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -478768,7 +477756,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12239">
+            <rdf:Description rdf:about="#R_MAR12239">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.8.2.14"/>
@@ -478780,19 +477768,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01987c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02682c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01987c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02682c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02681c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03588c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02681c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03588c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="St2"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12240" sboTerm="SBO:0000185" id="MAR12240" name="Glycodeoxycholic acid 3-sulfate ABC bile acid transporter" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12240" sboTerm="SBO:0000185" id="R_MAR12240" name="Glycodeoxycholic acid 3-sulfate ABC bile acid transporter" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -478801,7 +477789,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12240">
+            <rdf:Description rdf:about="#R_MAR12240">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GDCA3Sabc"/>
@@ -478812,15 +477800,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03589c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03589c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03589e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03589e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -478831,7 +477819,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12241" sboTerm="SBO:0000185" id="MAR12241" name="Glycodeoxycholic acid 3-sulfate via bicarbonate countertransport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12241" sboTerm="SBO:0000185" id="R_MAR12241" name="Glycodeoxycholic acid 3-sulfate via bicarbonate countertransport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -478840,7 +477828,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12241">
+            <rdf:Description rdf:about="#R_MAR12241">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GDCA3St"/>
@@ -478851,12 +477839,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03589e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03589e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03589c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03589c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -478868,7 +477856,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12242" sboTerm="SBO:0000176" id="MAR12242" name="Glycodeoxycholic acid sulfotransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12242" sboTerm="SBO:0000176" id="R_MAR12242" name="Glycodeoxycholic acid sulfotransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -478877,7 +477865,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12242">
+            <rdf:Description rdf:about="#R_MAR12242">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.8.2.14"/>
@@ -478889,19 +477877,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01989c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02682c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01989c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02682c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02681c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03589c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02681c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03589c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="St2"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12243" sboTerm="SBO:0000185" id="MAR12243" name="Glycoursodeoxycholic acid 3-sulfate ABC bile acid transporter" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12243" sboTerm="SBO:0000185" id="R_MAR12243" name="Glycoursodeoxycholic acid 3-sulfate ABC bile acid transporter" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -478910,7 +477898,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12243">
+            <rdf:Description rdf:about="#R_MAR12243">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GUDCA3Sabc"/>
@@ -478921,15 +477909,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03637c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03637c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03637e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03637e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -478940,7 +477928,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12244" sboTerm="SBO:0000185" id="MAR12244" name="Glycoursodeoxycholic acid 3-sulfate via bicarbonate countertransport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12244" sboTerm="SBO:0000185" id="R_MAR12244" name="Glycoursodeoxycholic acid 3-sulfate via bicarbonate countertransport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -478949,7 +477937,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12244">
+            <rdf:Description rdf:about="#R_MAR12244">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GUDCA3St"/>
@@ -478960,12 +477948,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03637e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03637e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03637c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03637c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -478977,7 +477965,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12245" sboTerm="SBO:0000176" id="MAR12245" name="Glycoursodeoxycholic acid sulfotransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12245" sboTerm="SBO:0000176" id="R_MAR12245" name="Glycoursodeoxycholic acid sulfotransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -478986,7 +477974,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12245">
+            <rdf:Description rdf:about="#R_MAR12245">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.8.2.14"/>
@@ -478998,19 +477986,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02004c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02682c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02004c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02682c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02681c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03637c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02681c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03637c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="St2"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12246" sboTerm="SBO:0000176" id="MAR12246" name="UDP-Glucuronosyltransferase (UGT) cytosolic (hyocholic acid)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12246" sboTerm="SBO:0000176" id="R_MAR12246" name="UDP-Glucuronosyltransferase (UGT) cytosolic (hyocholic acid)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -479019,7 +478007,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12246">
+            <rdf:Description rdf:about="#R_MAR12246">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.17"/>
@@ -479031,12 +478019,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03109c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03685c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03109c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03685c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03106c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03642c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03642c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -479047,7 +478035,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12247" sboTerm="SBO:0000176" id="MAR12247" name="UDP-Glucuronosyltransferase (UGT) (hyocholic acid)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12247" sboTerm="SBO:0000176" id="R_MAR12247" name="UDP-Glucuronosyltransferase (UGT) (hyocholic acid)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -479056,7 +478044,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12247">
+            <rdf:Description rdf:about="#R_MAR12247">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.17"/>
@@ -479068,12 +478056,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03109r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03685r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03109r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03685r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03106r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03642r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03642r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -479084,7 +478072,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12248" sboTerm="SBO:0000185" id="MAR12248" name="Glucuronidated bile acid excretion (HCA-24G)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12248" sboTerm="SBO:0000185" id="R_MAR12248" name="Glucuronidated bile acid excretion (HCA-24G)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -479093,7 +478081,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12248">
+            <rdf:Description rdf:about="#R_MAR12248">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/HCA24Gte"/>
@@ -479104,15 +478092,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03642c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03642c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03642e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03642e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -479122,7 +478110,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12249" sboTerm="SBO:0000185" id="MAR12249" name="Glucuronidated Compound Transport (HCA-24G)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12249" sboTerm="SBO:0000185" id="R_MAR12249" name="Glucuronidated Compound Transport (HCA-24G)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -479130,7 +478118,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12249">
+            <rdf:Description rdf:about="#R_MAR12249">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/HCA24Gtr"/>
@@ -479141,13 +478129,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03642c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03642c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03642r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03642r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12250" sboTerm="SBO:0000176" id="MAR12250" name="UDP-Glucuronosyltransferase (UGT) cytosolic (hyocholic acid)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12250" sboTerm="SBO:0000176" id="R_MAR12250" name="UDP-Glucuronosyltransferase (UGT) cytosolic (hyocholic acid)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -479156,7 +478144,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12250">
+            <rdf:Description rdf:about="#R_MAR12250">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.17"/>
@@ -479168,12 +478156,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03109c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03685c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03109c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03685c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03106c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03643c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03643c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -479183,7 +478171,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12251" sboTerm="SBO:0000176" id="MAR12251" name="UDP-Glucuronosyltransferase (UGT) ER (hyocholic acid)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12251" sboTerm="SBO:0000176" id="R_MAR12251" name="UDP-Glucuronosyltransferase (UGT) ER (hyocholic acid)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -479192,7 +478180,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12251">
+            <rdf:Description rdf:about="#R_MAR12251">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.17"/>
@@ -479204,12 +478192,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03109r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03685r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03109r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03685r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03106r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03643r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03643r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -479219,7 +478207,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12252" sboTerm="SBO:0000185" id="MAR12252" name="Glucuronidated bile acid excretion (HCA-6G)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12252" sboTerm="SBO:0000185" id="R_MAR12252" name="Glucuronidated bile acid excretion (HCA-6G)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -479228,7 +478216,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12252">
+            <rdf:Description rdf:about="#R_MAR12252">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/HCA6Gte"/>
@@ -479239,15 +478227,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03643c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03643c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03643e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03643e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -479257,7 +478245,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12253" sboTerm="SBO:0000185" id="MAR12253" name="Glucuronidated Compound Transport (HCA-6G)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12253" sboTerm="SBO:0000185" id="R_MAR12253" name="Glucuronidated Compound Transport (HCA-6G)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -479265,7 +478253,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12253">
+            <rdf:Description rdf:about="#R_MAR12253">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/HCA6Gtr"/>
@@ -479276,13 +478264,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03643c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03643c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03643r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03643r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12254" sboTerm="SBO:0000176" id="MAR12254" name="UDP-Glucuronosyltransferase (UGT) cytosolic (hyodeoxycholic acid)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12254" sboTerm="SBO:0000176" id="R_MAR12254" name="UDP-Glucuronosyltransferase (UGT) cytosolic (hyodeoxycholic acid)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -479291,7 +478279,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12254">
+            <rdf:Description rdf:about="#R_MAR12254">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.17"/>
@@ -479303,13 +478291,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02155c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03109c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02155c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03109c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03644c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03644c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -479326,7 +478314,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12255" sboTerm="SBO:0000176" id="MAR12255" name="UDP-Glucuronosyltransferase (UGT) (hyodeoxycholic acid)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12255" sboTerm="SBO:0000176" id="R_MAR12255" name="UDP-Glucuronosyltransferase (UGT) (hyodeoxycholic acid)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -479335,7 +478323,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12255">
+            <rdf:Description rdf:about="#R_MAR12255">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.17"/>
@@ -479347,13 +478335,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03109r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02155r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03109r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02155r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03644r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03644r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -479370,7 +478358,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12256" sboTerm="SBO:0000185" id="MAR12256" name="Glucuronidated bile acid excretion (HDCA-24G)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12256" sboTerm="SBO:0000185" id="R_MAR12256" name="Glucuronidated bile acid excretion (HDCA-24G)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -479379,7 +478367,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12256">
+            <rdf:Description rdf:about="#R_MAR12256">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/HDCA24Gte"/>
@@ -479390,15 +478378,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03644c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03644c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03644e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03644e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -479408,7 +478396,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12257" sboTerm="SBO:0000185" id="MAR12257" name="Glucuronidated Compound Transport (HDCA-24G)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12257" sboTerm="SBO:0000185" id="R_MAR12257" name="Glucuronidated Compound Transport (HDCA-24G)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -479416,7 +478404,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12257">
+            <rdf:Description rdf:about="#R_MAR12257">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/HDCA24Gtr"/>
@@ -479427,13 +478415,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03644c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03644c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03644r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03644r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12258" sboTerm="SBO:0000176" id="MAR12258" name="UDP-Glucuronosyltransferase (UGT) cytosolic (hyodeoxycholic acid)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12258" sboTerm="SBO:0000176" id="R_MAR12258" name="UDP-Glucuronosyltransferase (UGT) cytosolic (hyodeoxycholic acid)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -479442,7 +478430,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12258">
+            <rdf:Description rdf:about="#R_MAR12258">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.17"/>
@@ -479454,13 +478442,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02155c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03109c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02155c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03109c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03645c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03645c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -479471,7 +478459,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12259" sboTerm="SBO:0000176" id="MAR12259" name="UDP-Glucuronosyltransferase (UGT) ER (hyodeoxycholic acid)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12259" sboTerm="SBO:0000176" id="R_MAR12259" name="UDP-Glucuronosyltransferase (UGT) ER (hyodeoxycholic acid)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -479480,7 +478468,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12259">
+            <rdf:Description rdf:about="#R_MAR12259">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.17"/>
@@ -479492,13 +478480,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03109r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02155r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03109r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02155r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03645r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03645r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -479509,7 +478497,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12260" sboTerm="SBO:0000185" id="MAR12260" name="Glucuronidated bile acid excretion (HDCA-6G)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12260" sboTerm="SBO:0000185" id="R_MAR12260" name="Glucuronidated bile acid excretion (HDCA-6G)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -479518,7 +478506,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12260">
+            <rdf:Description rdf:about="#R_MAR12260">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/HDCA6Gte"/>
@@ -479529,15 +478517,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03645c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03645c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03645e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03645e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -479547,7 +478535,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12261" sboTerm="SBO:0000185" id="MAR12261" name="Glucuronidated Compound Transport (HDCA-6G)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12261" sboTerm="SBO:0000185" id="R_MAR12261" name="Glucuronidated Compound Transport (HDCA-6G)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -479555,7 +478543,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12261">
+            <rdf:Description rdf:about="#R_MAR12261">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/HDCA6Gtr"/>
@@ -479566,13 +478554,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03645c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03645c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03645r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03645r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12262" sboTerm="SBO:0000185" id="MAR12262" name="hyocholic acid ABC bile acid transporter" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12262" sboTerm="SBO:0000185" id="R_MAR12262" name="hyocholic acid ABC bile acid transporter" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -479581,7 +478569,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12262">
+            <rdf:Description rdf:about="#R_MAR12262">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/HYOCHOLabc"/>
@@ -479592,15 +478580,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03685c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03685c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03685e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03685e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -479609,7 +478597,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12263" sboTerm="SBO:0000185" id="MAR12263" name="hyocholic acid transport via bicarbonate countertransport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12263" sboTerm="SBO:0000185" id="R_MAR12263" name="hyocholic acid transport via bicarbonate countertransport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -479618,7 +478606,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12263">
+            <rdf:Description rdf:about="#R_MAR12263">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/HYOCHOLt"/>
@@ -479629,12 +478617,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03685e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03685e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03685c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03685c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -479647,7 +478635,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12264" sboTerm="SBO:0000185" id="MAR12264" name="hyocholic acid transport via sodium cotransport" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12264" sboTerm="SBO:0000185" id="R_MAR12264" name="hyocholic acid transport via sodium cotransport" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -479656,7 +478644,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12264">
+            <rdf:Description rdf:about="#R_MAR12264">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/HYOCHOLt2"/>
@@ -479667,12 +478655,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02519e" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03685e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03685e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02519c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03685c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03685c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -479681,7 +478669,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12265" sboTerm="SBO:0000185" id="MAR12265" name="Bile salt transport (hyocholic acid)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12265" sboTerm="SBO:0000185" id="R_MAR12265" name="Bile salt transport (hyocholic acid)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -479690,7 +478678,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12265">
+            <rdf:Description rdf:about="#R_MAR12265">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/HYOCHOLtr"/>
@@ -479701,13 +478689,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03685c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03685c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03685r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03685r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12266" sboTerm="SBO:0000185" id="MAR12266" name="Isochenodeoxycholic acid ABC bile acid transporter" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12266" sboTerm="SBO:0000185" id="R_MAR12266" name="Isochenodeoxycholic acid ABC bile acid transporter" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -479716,7 +478704,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12266">
+            <rdf:Description rdf:about="#R_MAR12266">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ICDCHOLabc"/>
@@ -479727,15 +478715,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03691c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03691c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03691e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03691e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -479746,7 +478734,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12267" sboTerm="SBO:0000185" id="MAR12267" name="Isochenodeoxycholic acid transport via bicarbonate countertransport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12267" sboTerm="SBO:0000185" id="R_MAR12267" name="Isochenodeoxycholic acid transport via bicarbonate countertransport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -479755,7 +478743,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12267">
+            <rdf:Description rdf:about="#R_MAR12267">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ICDCHOLt"/>
@@ -479766,12 +478754,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03691e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03691e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03691c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03691c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -479784,7 +478772,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12268" sboTerm="SBO:0000185" id="MAR12268" name="Isochenodeoxycholic acid transport via sodium cotransport" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12268" sboTerm="SBO:0000185" id="R_MAR12268" name="Isochenodeoxycholic acid transport via sodium cotransport" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -479793,7 +478781,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12268">
+            <rdf:Description rdf:about="#R_MAR12268">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ICDCHOLt2"/>
@@ -479804,12 +478792,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02519e" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03691e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03691e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02519c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03691c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03691c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -479818,7 +478806,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12269" sboTerm="SBO:0000185" id="MAR12269" name="Isocholic acid ABC bile acid transporter" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12269" sboTerm="SBO:0000185" id="R_MAR12269" name="Isocholic acid ABC bile acid transporter" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -479827,7 +478815,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12269">
+            <rdf:Description rdf:about="#R_MAR12269">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ISOCHOLabc"/>
@@ -479838,15 +478826,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03704c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03704c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03704e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03704e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -479857,7 +478845,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12270" sboTerm="SBO:0000185" id="MAR12270" name="Isocholic acid transport via bicarbonate countertransport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12270" sboTerm="SBO:0000185" id="R_MAR12270" name="Isocholic acid transport via bicarbonate countertransport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -479866,7 +478854,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12270">
+            <rdf:Description rdf:about="#R_MAR12270">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ISOCHOLt"/>
@@ -479877,12 +478865,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03704e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03704e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03704c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03704c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -479895,7 +478883,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12271" sboTerm="SBO:0000185" id="MAR12271" name="Isocholic acid transport via sodium cotransport" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12271" sboTerm="SBO:0000185" id="R_MAR12271" name="Isocholic acid transport via sodium cotransport" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -479904,7 +478892,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12271">
+            <rdf:Description rdf:about="#R_MAR12271">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ISOCHOLt2"/>
@@ -479915,12 +478903,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02519e" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03704e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03704e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02519c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03704c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03704c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -479929,7 +478917,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12272" sboTerm="SBO:0000176" id="MAR12272" name="UDP-Glucuronosyltransferase (UGT) cytosolic (lithocholic acid)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12272" sboTerm="SBO:0000176" id="R_MAR12272" name="UDP-Glucuronosyltransferase (UGT) cytosolic (lithocholic acid)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -479938,7 +478926,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12272">
+            <rdf:Description rdf:about="#R_MAR12272">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.17"/>
@@ -479950,12 +478938,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02402c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03109c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02402c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03109c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03106c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03707c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03707c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -479973,7 +478961,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12273" sboTerm="SBO:0000176" id="MAR12273" name="UDP-Glucuronosyltransferase (UGT) ER (lithocholic acid)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12273" sboTerm="SBO:0000176" id="R_MAR12273" name="UDP-Glucuronosyltransferase (UGT) ER (lithocholic acid)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -479982,7 +478970,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12273">
+            <rdf:Description rdf:about="#R_MAR12273">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.17"/>
@@ -479994,12 +478982,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02402r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03109r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02402r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03109r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03106r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03707r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03707r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -480017,7 +479005,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12274" sboTerm="SBO:0000185" id="MAR12274" name="Glucuronidated bile acid excretion (LCA-24G)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12274" sboTerm="SBO:0000185" id="R_MAR12274" name="Glucuronidated bile acid excretion (LCA-24G)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -480026,7 +479014,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12274">
+            <rdf:Description rdf:about="#R_MAR12274">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/LCA24Gte"/>
@@ -480037,15 +479025,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03707c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03707c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03707e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03707e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -480055,7 +479043,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12275" sboTerm="SBO:0000185" id="MAR12275" name="Glucuronidated Compound Transport (LCA-24G)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12275" sboTerm="SBO:0000185" id="R_MAR12275" name="Glucuronidated Compound Transport (LCA-24G)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -480063,7 +479051,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12275">
+            <rdf:Description rdf:about="#R_MAR12275">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/LCA24Gtr"/>
@@ -480074,13 +479062,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03707c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03707c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03707r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03707r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12276" sboTerm="SBO:0000176" id="MAR12276" name="UDP-Glucuronosyltransferase (UGT) cytosolic (lithocholic acid)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12276" sboTerm="SBO:0000176" id="R_MAR12276" name="UDP-Glucuronosyltransferase (UGT) cytosolic (lithocholic acid)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -480089,7 +479077,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12276">
+            <rdf:Description rdf:about="#R_MAR12276">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.17"/>
@@ -480101,12 +479089,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02402c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03109c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02402c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03109c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03106c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03708c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03708c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -480117,7 +479105,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12277" sboTerm="SBO:0000176" id="MAR12277" name="UDP-Glucuronosyltransferase (UGT) ER (lithocholic acid)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12277" sboTerm="SBO:0000176" id="R_MAR12277" name="UDP-Glucuronosyltransferase (UGT) ER (lithocholic acid)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -480126,7 +479114,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12277">
+            <rdf:Description rdf:about="#R_MAR12277">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.17"/>
@@ -480138,12 +479126,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02402r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03109r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02402r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03109r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03106r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03708r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03708r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -480154,7 +479142,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12278" sboTerm="SBO:0000185" id="MAR12278" name="Glucuronidated bile acid excretion (LCA-3G)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12278" sboTerm="SBO:0000185" id="R_MAR12278" name="Glucuronidated bile acid excretion (LCA-3G)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -480163,7 +479151,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12278">
+            <rdf:Description rdf:about="#R_MAR12278">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/LCA3Gte"/>
@@ -480174,15 +479162,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03708c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03708c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03708e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03708e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -480192,7 +479180,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12279" sboTerm="SBO:0000185" id="MAR12279" name="Glucuronidated Compound Transport (LCA-3G)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12279" sboTerm="SBO:0000185" id="R_MAR12279" name="Glucuronidated Compound Transport (LCA-3G)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -480200,7 +479188,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12279">
+            <rdf:Description rdf:about="#R_MAR12279">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/LCA3Gtr"/>
@@ -480211,13 +479199,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03708c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03708c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03708r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03708r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12280" sboTerm="SBO:0000185" id="MAR12280" name="Lithocholic acid 3-sulfate ABC bile acid transporter" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12280" sboTerm="SBO:0000185" id="R_MAR12280" name="Lithocholic acid 3-sulfate ABC bile acid transporter" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -480226,7 +479214,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12280">
+            <rdf:Description rdf:about="#R_MAR12280">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/LCA3Sabc"/>
@@ -480237,15 +479225,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03709c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03709c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03709e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03709e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -480256,7 +479244,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12281" sboTerm="SBO:0000185" id="MAR12281" name="Lithocholic acid 3-sulfate transport via bicarbonate countertransport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12281" sboTerm="SBO:0000185" id="R_MAR12281" name="Lithocholic acid 3-sulfate transport via bicarbonate countertransport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -480265,7 +479253,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12281">
+            <rdf:Description rdf:about="#R_MAR12281">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/LCA3St"/>
@@ -480276,12 +479264,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03709e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03709e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03709c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03709c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -480293,7 +479281,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12282" sboTerm="SBO:0000176" id="MAR12282" name="Lithocholic acid sulfotransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12282" sboTerm="SBO:0000176" id="R_MAR12282" name="Lithocholic acid sulfotransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -480302,7 +479290,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12282">
+            <rdf:Description rdf:about="#R_MAR12282">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.8.2.14"/>
@@ -480314,19 +479302,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02402c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02682c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02402c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02682c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02681c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03709c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02681c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03709c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="St2"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12283" sboTerm="SBO:0000185" id="MAR12283" name="Bile salt transport (hyodeoxycholic acid)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12283" sboTerm="SBO:0000185" id="R_MAR12283" name="Bile salt transport (hyodeoxycholic acid)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -480335,7 +479323,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12283">
+            <rdf:Description rdf:about="#R_MAR12283">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/M02155tr"/>
@@ -480346,13 +479334,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02155c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02155c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02155r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02155r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12284" sboTerm="SBO:0000185" id="MAR12284" name="Taurocholic acid 3-sulfate ABC bile acid transporter" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12284" sboTerm="SBO:0000185" id="R_MAR12284" name="Taurocholic acid 3-sulfate ABC bile acid transporter" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -480361,7 +479349,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12284">
+            <rdf:Description rdf:about="#R_MAR12284">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/TCA3Sabc"/>
@@ -480372,15 +479360,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03962c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03962c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03962e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03962e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -480391,7 +479379,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12285" sboTerm="SBO:0000185" id="MAR12285" name="Taurocholic acid 3-sulfate transport via bicarbonate countertransport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12285" sboTerm="SBO:0000185" id="R_MAR12285" name="Taurocholic acid 3-sulfate transport via bicarbonate countertransport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -480400,7 +479388,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12285">
+            <rdf:Description rdf:about="#R_MAR12285">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/TCA3St"/>
@@ -480411,12 +479399,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03962e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03962e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03962c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03962c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -480428,7 +479416,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12286" sboTerm="SBO:0000176" id="MAR12286" name="Taurocholic acid sulfotransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12286" sboTerm="SBO:0000176" id="R_MAR12286" name="Taurocholic acid sulfotransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -480437,7 +479425,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12286">
+            <rdf:Description rdf:about="#R_MAR12286">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.8.2.14"/>
@@ -480449,19 +479437,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02682c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02963c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02682c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02963c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02681c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03962c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02681c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03962c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="St2"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12287" sboTerm="SBO:0000185" id="MAR12287" name="Taurochenodeoxycholic acid 3-sulfate ABC bile acid transporter" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12287" sboTerm="SBO:0000185" id="R_MAR12287" name="Taurochenodeoxycholic acid 3-sulfate ABC bile acid transporter" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -480470,7 +479458,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12287">
+            <rdf:Description rdf:about="#R_MAR12287">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/TCDCA3Sabc"/>
@@ -480481,15 +479469,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03963c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03963c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03963e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03963e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -480500,7 +479488,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12288" sboTerm="SBO:0000185" id="MAR12288" name="Taurochenodeoxycholic acid 3-sulfate transport via bicarbonate countertransport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12288" sboTerm="SBO:0000185" id="R_MAR12288" name="Taurochenodeoxycholic acid 3-sulfate transport via bicarbonate countertransport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -480509,7 +479497,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12288">
+            <rdf:Description rdf:about="#R_MAR12288">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/TCDCA3St"/>
@@ -480520,12 +479508,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03963e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03963e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03963c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03963c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -480537,7 +479525,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12289" sboTerm="SBO:0000176" id="MAR12289" name="Taurochenodeoxycholic acid 6alpha-hydroxylase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12289" sboTerm="SBO:0000176" id="R_MAR12289" name="Taurochenodeoxycholic acid 6alpha-hydroxylase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -480546,7 +479534,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12289">
+            <rdf:Description rdf:about="#R_MAR12289">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.13.97"/>
@@ -480558,14 +479546,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02962c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02962c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03996c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03996c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -480574,7 +479562,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12290" sboTerm="SBO:0000176" id="MAR12290" name="Taurochenodeoxycholic acid sulfotransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12290" sboTerm="SBO:0000176" id="R_MAR12290" name="Taurochenodeoxycholic acid sulfotransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -480583,7 +479571,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12290">
+            <rdf:Description rdf:about="#R_MAR12290">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.8.2.14"/>
@@ -480595,19 +479583,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02682c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02962c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02682c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02962c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02681c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03963c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02681c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03963c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="St2"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12291" sboTerm="SBO:0000185" id="MAR12291" name="Taurodeoxycholic acid 3-sulfate ABC bile acid transporter" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12291" sboTerm="SBO:0000185" id="R_MAR12291" name="Taurodeoxycholic acid 3-sulfate ABC bile acid transporter" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -480616,7 +479604,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12291">
+            <rdf:Description rdf:about="#R_MAR12291">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/TDCA3Sabc"/>
@@ -480627,15 +479615,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03965c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03965c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03965e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03965e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -480646,7 +479634,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12292" sboTerm="SBO:0000185" id="MAR12292" name="Taurodeoxycholic acid 3-sulfate transport via bicarbonate countertransport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12292" sboTerm="SBO:0000185" id="R_MAR12292" name="Taurodeoxycholic acid 3-sulfate transport via bicarbonate countertransport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -480655,7 +479643,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12292">
+            <rdf:Description rdf:about="#R_MAR12292">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/TDCA3St"/>
@@ -480666,12 +479654,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03965e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03965e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03965c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03965c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -480683,7 +479671,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12293" sboTerm="SBO:0000176" id="MAR12293" name="Taurodeoxycholic acid sulfotransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12293" sboTerm="SBO:0000176" id="R_MAR12293" name="Taurodeoxycholic acid sulfotransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -480692,7 +479680,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12293">
+            <rdf:Description rdf:about="#R_MAR12293">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.8.2.14"/>
@@ -480704,19 +479692,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02682c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02964c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02682c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02964c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02681c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03965c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02681c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03965c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="St2"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12294" sboTerm="SBO:0000185" id="MAR12294" name="taurohyocholic acid ABC bile acid transporter" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12294" sboTerm="SBO:0000185" id="R_MAR12294" name="taurohyocholic acid ABC bile acid transporter" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -480725,7 +479713,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12294">
+            <rdf:Description rdf:about="#R_MAR12294">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/THYOCHOLabc"/>
@@ -480736,15 +479724,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03996c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03996c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03996e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03996e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -480753,7 +479741,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12295" sboTerm="SBO:0000185" id="MAR12295" name="taurohyocholic acid transport via bicarbonate countertransport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12295" sboTerm="SBO:0000185" id="R_MAR12295" name="taurohyocholic acid transport via bicarbonate countertransport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -480762,7 +479750,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12295">
+            <rdf:Description rdf:about="#R_MAR12295">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/THYOCHOLt"/>
@@ -480773,12 +479761,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03996e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03996e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03996c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03996c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -480791,7 +479779,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12296" sboTerm="SBO:0000185" id="MAR12296" name="taurohyocholic acid transport via sodium cotransport" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12296" sboTerm="SBO:0000185" id="R_MAR12296" name="taurohyocholic acid transport via sodium cotransport" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -480800,7 +479788,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12296">
+            <rdf:Description rdf:about="#R_MAR12296">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/THYOCHOLt2"/>
@@ -480811,12 +479799,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02519e" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03996e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03996e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02519c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03996c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03996c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -480825,7 +479813,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12297" sboTerm="SBO:0000185" id="MAR12297" name="Tauroursodeoxycholic acid 3-sulfate ABC bile acid transporter" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12297" sboTerm="SBO:0000185" id="R_MAR12297" name="Tauroursodeoxycholic acid 3-sulfate ABC bile acid transporter" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -480834,7 +479822,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12297">
+            <rdf:Description rdf:about="#R_MAR12297">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/TUDCA3Sabc"/>
@@ -480845,15 +479833,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM04042c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04042c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM04042e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04042e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -480864,7 +479852,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12298" sboTerm="SBO:0000185" id="MAR12298" name="Tauroursodeoxycholic acid 3-sulfate transport via bicarbonate countertransport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12298" sboTerm="SBO:0000185" id="R_MAR12298" name="Tauroursodeoxycholic acid 3-sulfate transport via bicarbonate countertransport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -480873,7 +479861,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12298">
+            <rdf:Description rdf:about="#R_MAR12298">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/TUDCA3St"/>
@@ -480884,12 +479872,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM04042e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04042e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM04042c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04042c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -480901,7 +479889,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12299" sboTerm="SBO:0000176" id="MAR12299" name="Tauroursodeoxycholic acid sulfotransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12299" sboTerm="SBO:0000176" id="R_MAR12299" name="Tauroursodeoxycholic acid sulfotransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -480910,7 +479898,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12299">
+            <rdf:Description rdf:about="#R_MAR12299">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.8.2.14"/>
@@ -480922,19 +479910,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02682c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02966c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02682c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02966c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02681c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM04042c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02681c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04042c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="St2"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12300" sboTerm="SBO:0000185" id="MAR12300" name="Ursocholic acid ABC bile acid transporter" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12300" sboTerm="SBO:0000185" id="R_MAR12300" name="Ursocholic acid ABC bile acid transporter" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -480943,7 +479931,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12300">
+            <rdf:Description rdf:about="#R_MAR12300">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/UCHOLabc"/>
@@ -480954,15 +479942,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM04057c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04057c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM04057e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04057e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -480973,7 +479961,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12301" sboTerm="SBO:0000185" id="MAR12301" name="Ursocholic acid transport via bicarbonate countertransport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12301" sboTerm="SBO:0000185" id="R_MAR12301" name="Ursocholic acid transport via bicarbonate countertransport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -480982,7 +479970,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12301">
+            <rdf:Description rdf:about="#R_MAR12301">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/UCHOLt"/>
@@ -480993,12 +479981,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM04057e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04057e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM04057c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04057c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -481011,7 +479999,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12302" sboTerm="SBO:0000185" id="MAR12302" name="Ursocholic acid transport via sodium cotransport" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12302" sboTerm="SBO:0000185" id="R_MAR12302" name="Ursocholic acid transport via sodium cotransport" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -481020,7 +480008,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12302">
+            <rdf:Description rdf:about="#R_MAR12302">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/UCHOLt2"/>
@@ -481031,12 +480019,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02519e" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM04057e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM04057e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02519c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM04057c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM04057c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -481045,7 +480033,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12303" sboTerm="SBO:0000185" id="MAR12303" name="Ursodeoxycholic acid 3-sulfate ABC bile acid transporter" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12303" sboTerm="SBO:0000185" id="R_MAR12303" name="Ursodeoxycholic acid 3-sulfate ABC bile acid transporter" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -481054,7 +480042,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12303">
+            <rdf:Description rdf:about="#R_MAR12303">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/UDCA3Sabc"/>
@@ -481065,15 +480053,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM04058c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04058c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM04058e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04058e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -481084,7 +480072,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12304" sboTerm="SBO:0000185" id="MAR12304" name="Ursodeoxycholic acid 3-sulfate transport via bicarbonate countertransport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12304" sboTerm="SBO:0000185" id="R_MAR12304" name="Ursodeoxycholic acid 3-sulfate transport via bicarbonate countertransport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -481093,7 +480081,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12304">
+            <rdf:Description rdf:about="#R_MAR12304">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/UDCA3St"/>
@@ -481104,12 +480092,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM04058e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04058e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM04058c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04058c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -481121,7 +480109,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12305" sboTerm="SBO:0000176" id="MAR12305" name="Ursodeoxycholic acid sulfotransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12305" sboTerm="SBO:0000176" id="R_MAR12305" name="Ursodeoxycholic acid sulfotransferase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -481130,7 +480118,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12305">
+            <rdf:Description rdf:about="#R_MAR12305">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.8.2.14"/>
@@ -481142,19 +480130,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02682c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03129c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02682c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03129c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02681c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM04058c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02681c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04058c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="St2"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12306" sboTerm="SBO:0000185" id="MAR12306" name="Ursodeoxycholic acid transport via bicarbonate countertransport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12306" sboTerm="SBO:0000185" id="R_MAR12306" name="Ursodeoxycholic acid transport via bicarbonate countertransport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -481163,7 +480151,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12306">
+            <rdf:Description rdf:about="#R_MAR12306">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/UDCHOLt"/>
@@ -481174,12 +480162,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03129e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03129e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03129c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03129c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -481192,7 +480180,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12307" sboTerm="SBO:0000185" id="MAR12307" name="Ursodeoxycholic acid transport via sodium cotransport" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12307" sboTerm="SBO:0000185" id="R_MAR12307" name="Ursodeoxycholic acid transport via sodium cotransport" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -481201,7 +480189,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12307">
+            <rdf:Description rdf:about="#R_MAR12307">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/UDCHOLt2"/>
@@ -481212,12 +480200,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02519e" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03129e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03129e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02519c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03129c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03129c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -481226,7 +480214,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12308" sboTerm="SBO:0000176" id="MAR12308" name="oxidation of tacrolimus in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12308" sboTerm="SBO:0000176" id="R_MAR12308" name="oxidation of tacrolimus in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -481235,7 +480223,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12308">
+            <rdf:Description rdf:about="#R_MAR12308">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.13.-"/>
@@ -481248,15 +480236,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03959r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03959r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01817r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01817r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -481265,7 +480253,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12309" sboTerm="SBO:0000185" id="MAR12309" name="efflux of 12-hydroxy tacrolimus into intestinal lumen by ABC transporter" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12309" sboTerm="SBO:0000185" id="R_MAR12309" name="efflux of 12-hydroxy tacrolimus into intestinal lumen by ABC transporter" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -481274,7 +480262,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12309">
+            <rdf:Description rdf:about="#R_MAR12309">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/12HTACRtu"/>
@@ -481285,18 +480273,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01817c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01817c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01817e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01817e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12310" sboTerm="SBO:0000185" id="MAR12310" name="exit of 12-hydroxy tacrolimus into portal blood" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12310" sboTerm="SBO:0000185" id="R_MAR12310" name="exit of 12-hydroxy tacrolimus into portal blood" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -481305,7 +480293,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12310">
+            <rdf:Description rdf:about="#R_MAR12310">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/12HTACRtep"/>
@@ -481316,13 +480304,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01817c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01817c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01817e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01817e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12311" sboTerm="SBO:0000176" id="MAR12311" name="demethylation of 13-O-desmethyl-tacrolimus to 13,31-O-Didesmethyl-tacrolimus in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12311" sboTerm="SBO:0000176" id="R_MAR12311" name="demethylation of 13-O-desmethyl-tacrolimus to 13,31-O-Didesmethyl-tacrolimus in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -481331,7 +480319,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12311">
+            <rdf:Description rdf:about="#R_MAR12311">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/1331TAALThr"/>
@@ -481342,16 +480330,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02871r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01875r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02871r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01875r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02877r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01818r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02877r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01818r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12312" sboTerm="SBO:0000176" id="MAR12312" name="demethylation of 31-O-desmethyl-tacrolimus to 13,31-O-Didesmethyl-tacrolimus in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12312" sboTerm="SBO:0000176" id="R_MAR12312" name="demethylation of 31-O-desmethyl-tacrolimus to 13,31-O-Didesmethyl-tacrolimus in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -481360,7 +480348,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12312">
+            <rdf:Description rdf:about="#R_MAR12312">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/1331TACRhr"/>
@@ -481371,16 +480359,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02871r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03196r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02871r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03196r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02877r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01818r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02877r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01818r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12313" sboTerm="SBO:0000185" id="MAR12313" name="efflux of 13,31-O-Didesmethyl-tacrolimus into bile" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12313" sboTerm="SBO:0000185" id="R_MAR12313" name="efflux of 13,31-O-Didesmethyl-tacrolimus into bile" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -481389,7 +480377,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12313">
+            <rdf:Description rdf:about="#R_MAR12313">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/1331TACRteb"/>
@@ -481400,18 +480388,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01818c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01818c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01818e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01818e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12314" sboTerm="SBO:0000185" id="MAR12314" name="exit of 13,31-O-Didesmethyl-tacrolimus into hepatic vein" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12314" sboTerm="SBO:0000185" id="R_MAR12314" name="exit of 13,31-O-Didesmethyl-tacrolimus into hepatic vein" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -481420,7 +480408,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12314">
+            <rdf:Description rdf:about="#R_MAR12314">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/1331TACRtev"/>
@@ -481431,13 +480419,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01818c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01818c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01818e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01818e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12315" sboTerm="SBO:0000176" id="MAR12315" name="demthylation of tacrolimus to 13-O-desmethyl tacrolimus in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12315" sboTerm="SBO:0000176" id="R_MAR12315" name="demthylation of tacrolimus to 13-O-desmethyl tacrolimus in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -481446,7 +480434,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12315">
+            <rdf:Description rdf:about="#R_MAR12315">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/13DMThr"/>
@@ -481457,16 +480445,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02871r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03959r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02871r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03959r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02877r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01875r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02877r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01875r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12316" sboTerm="SBO:0000185" id="MAR12316" name="efflux of 13-O-desmethyl tacrolimus into intestinal lumen by ABC transporter" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12316" sboTerm="SBO:0000185" id="R_MAR12316" name="efflux of 13-O-desmethyl tacrolimus into intestinal lumen by ABC transporter" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -481475,7 +480463,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12316">
+            <rdf:Description rdf:about="#R_MAR12316">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/13DMTtu"/>
@@ -481486,18 +480474,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01875c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01875c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01875e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01875e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12317" sboTerm="SBO:0000185" id="MAR12317" name="exit of 13-O-desmethyl tacrolimus into portal blood" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12317" sboTerm="SBO:0000185" id="R_MAR12317" name="exit of 13-O-desmethyl tacrolimus into portal blood" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -481506,7 +480494,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12317">
+            <rdf:Description rdf:about="#R_MAR12317">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/13DMTtep"/>
@@ -481517,13 +480505,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01875c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01875c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01875e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01875e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12318" sboTerm="SBO:0000176" id="MAR12318" name="oxidation of 4-OH-midazolam to 1,4-Dihydroxy-midazolam in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12318" sboTerm="SBO:0000176" id="R_MAR12318" name="oxidation of 4-OH-midazolam to 1,4-Dihydroxy-midazolam in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -481532,7 +480520,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12318">
+            <rdf:Description rdf:about="#R_MAR12318">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.13.-"/>
@@ -481545,15 +480533,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03278r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03278r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01888r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01888r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -481562,7 +480550,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12319" sboTerm="SBO:0000176" id="MAR12319" name="oxidation of 1-OH-midazolam to 1,4-Dihydroxy-midazolam in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12319" sboTerm="SBO:0000176" id="R_MAR12319" name="oxidation of 1-OH-midazolam to 1,4-Dihydroxy-midazolam in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -481571,7 +480559,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12319">
+            <rdf:Description rdf:about="#R_MAR12319">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.13.-"/>
@@ -481584,15 +480572,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01903r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01903r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01888r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01888r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -481601,7 +480589,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12320" sboTerm="SBO:0000185" id="MAR12320" name="efflux of 1,4-Dihydroxy-midazolam into hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12320" sboTerm="SBO:0000185" id="R_MAR12320" name="efflux of 1,4-Dihydroxy-midazolam into hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -481610,7 +480598,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12320">
+            <rdf:Description rdf:about="#R_MAR12320">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/14MDZtev"/>
@@ -481621,13 +480609,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01888c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01888c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01888e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01888e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12321" sboTerm="SBO:0000176" id="MAR12321" name="demthylation of 15-O-desmethyl tacrolimus to 13,15-O-didesmethyl tacrolimus in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12321" sboTerm="SBO:0000176" id="R_MAR12321" name="demthylation of 15-O-desmethyl tacrolimus to 13,15-O-didesmethyl tacrolimus in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -481636,7 +480624,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12321">
+            <rdf:Description rdf:about="#R_MAR12321">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/1513DTALThr"/>
@@ -481647,16 +480635,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02871r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01891r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02871r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01891r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02877r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01889r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02877r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01889r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12322" sboTerm="SBO:0000176" id="MAR12322" name="demthylation of 13-O-desmethyl tacrolimus to 13,15-O-didesmethyl tacrolimus in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12322" sboTerm="SBO:0000176" id="R_MAR12322" name="demthylation of 13-O-desmethyl tacrolimus to 13,15-O-didesmethyl tacrolimus in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -481665,7 +480653,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12322">
+            <rdf:Description rdf:about="#R_MAR12322">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/1513DTACRhr"/>
@@ -481676,16 +480664,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02871r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01875r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02871r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01875r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02877r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01889r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02877r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01889r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12323" sboTerm="SBO:0000185" id="MAR12323" name="efflux of 13,15-O-didesmethyl tacrolimus into intestinal lumen by ABC transporter" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12323" sboTerm="SBO:0000185" id="R_MAR12323" name="efflux of 13,15-O-didesmethyl tacrolimus into intestinal lumen by ABC transporter" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -481694,7 +480682,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12323">
+            <rdf:Description rdf:about="#R_MAR12323">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/1513TACRtu"/>
@@ -481705,18 +480693,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01889c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01889c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01889e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01889e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12324" sboTerm="SBO:0000185" id="MAR12324" name="exit of 13,15-O-didesmethyl tacrolimus into portal blood" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12324" sboTerm="SBO:0000185" id="R_MAR12324" name="exit of 13,15-O-didesmethyl tacrolimus into portal blood" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -481725,7 +480713,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12324">
+            <rdf:Description rdf:about="#R_MAR12324">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/1513TACRtep"/>
@@ -481736,13 +480724,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01889c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01889c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01889e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01889e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12325" sboTerm="SBO:0000176" id="MAR12325" name="demethylation of 15-O-desmethyl tacrolimus to 15, 31-O-Didesmethyl-tacrolimus in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12325" sboTerm="SBO:0000176" id="R_MAR12325" name="demethylation of 15-O-desmethyl tacrolimus to 15, 31-O-Didesmethyl-tacrolimus in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -481751,7 +480739,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12325">
+            <rdf:Description rdf:about="#R_MAR12325">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/1531TACRhr"/>
@@ -481762,16 +480750,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02871r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01891r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02871r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01891r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02877r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01890r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02877r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01890r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12326" sboTerm="SBO:0000185" id="MAR12326" name="efflux of 15, 31-O-Didesmethyl-tacrolimus into bile" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12326" sboTerm="SBO:0000185" id="R_MAR12326" name="efflux of 15, 31-O-Didesmethyl-tacrolimus into bile" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -481780,7 +480768,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12326">
+            <rdf:Description rdf:about="#R_MAR12326">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/1531TACRteb"/>
@@ -481791,18 +480779,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01890c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01890c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01890e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01890e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12327" sboTerm="SBO:0000185" id="MAR12327" name="exit of 15, 31-O-Didesmethyl-tacrolimus into hepatic vein" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12327" sboTerm="SBO:0000185" id="R_MAR12327" name="exit of 15, 31-O-Didesmethyl-tacrolimus into hepatic vein" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -481811,7 +480799,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12327">
+            <rdf:Description rdf:about="#R_MAR12327">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/1531TACRtev"/>
@@ -481822,13 +480810,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01890c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01890c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01890e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01890e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12328" sboTerm="SBO:0000176" id="MAR12328" name="demethylation of 31-O-desmethyl tacrolimus to 15, 31-O-Didesmethyl-tacrolimus in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12328" sboTerm="SBO:0000176" id="R_MAR12328" name="demethylation of 31-O-desmethyl tacrolimus to 15, 31-O-Didesmethyl-tacrolimus in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -481837,7 +480825,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12328">
+            <rdf:Description rdf:about="#R_MAR12328">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/1531TALThr"/>
@@ -481848,16 +480836,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02871r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03196r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02871r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03196r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02877r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01890r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02877r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01890r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12329" sboTerm="SBO:0000176" id="MAR12329" name="demethylation of tacrolimus to 15-O-desmethyl tacrolimus in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12329" sboTerm="SBO:0000176" id="R_MAR12329" name="demethylation of tacrolimus to 15-O-desmethyl tacrolimus in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -481866,7 +480854,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12329">
+            <rdf:Description rdf:about="#R_MAR12329">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/15DMThr"/>
@@ -481877,16 +480865,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02871r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03959r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02871r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03959r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02877r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01891r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02877r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01891r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12330" sboTerm="SBO:0000185" id="MAR12330" name="efflux of 15-O-desmethyl tacrolimus into intestinal lumen by ABC transporter" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12330" sboTerm="SBO:0000185" id="R_MAR12330" name="efflux of 15-O-desmethyl tacrolimus into intestinal lumen by ABC transporter" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -481895,7 +480883,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12330">
+            <rdf:Description rdf:about="#R_MAR12330">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/15DMTtu"/>
@@ -481906,18 +480894,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01891c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01891c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01891e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01891e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12331" sboTerm="SBO:0000185" id="MAR12331" name="exit of 15-O-desmethyl tacrolimus into portal blood" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12331" sboTerm="SBO:0000185" id="R_MAR12331" name="exit of 15-O-desmethyl tacrolimus into portal blood" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -481926,7 +480914,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12331">
+            <rdf:Description rdf:about="#R_MAR12331">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/15DMTtep"/>
@@ -481937,13 +480925,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01891c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01891c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01891e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01891e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12332" sboTerm="SBO:0000185" id="MAR12332" name="release of 1-hydroxy S-ibuprofen-glucuronide into hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12332" sboTerm="SBO:0000185" id="R_MAR12332" name="release of 1-hydroxy S-ibuprofen-glucuronide into hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -481952,7 +480940,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12332">
+            <rdf:Description rdf:about="#R_MAR12332">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/1HIBUPGLUC_Sthv"/>
@@ -481963,13 +480951,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01901c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01901c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01901e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01901e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12333" sboTerm="SBO:0000176" id="MAR12333" name="glucuronidation of 1-hydroxy ibuprofen" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12333" sboTerm="SBO:0000176" id="R_MAR12333" name="glucuronidation of 1-hydroxy ibuprofen" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -481978,7 +480966,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12333">
+            <rdf:Description rdf:about="#R_MAR12333">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.17"/>
@@ -481990,12 +480978,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03109r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01894r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03109r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01894r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03106r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01901r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01901r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -482010,7 +480998,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12334" sboTerm="SBO:0000185" id="MAR12334" name="release of 1-hydroxy-ibuprofen into hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12334" sboTerm="SBO:0000185" id="R_MAR12334" name="release of 1-hydroxy-ibuprofen into hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -482019,7 +481007,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12334">
+            <rdf:Description rdf:about="#R_MAR12334">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/1HIBUP_Sthv"/>
@@ -482030,13 +481018,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01894c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01894c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01894e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01894e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12335" sboTerm="SBO:0000176" id="MAR12335" name="glucuronidation of 1-OH-midazolam in enterocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12335" sboTerm="SBO:0000176" id="R_MAR12335" name="glucuronidation of 1-OH-midazolam in enterocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -482045,7 +481033,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12335">
+            <rdf:Description rdf:about="#R_MAR12335">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/1HMDGLUChr"/>
@@ -482056,13 +481044,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03109r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01903r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03109r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01903r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01902r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01902r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -482079,7 +481067,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12336" sboTerm="SBO:0000185" id="MAR12336" name="uptake of 1-OH-midazolam-glucuronide into hepatocytes" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12336" sboTerm="SBO:0000185" id="R_MAR12336" name="uptake of 1-OH-midazolam-glucuronide into hepatocytes" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -482088,7 +481076,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12336">
+            <rdf:Description rdf:about="#R_MAR12336">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/1HMDZGLUChc"/>
@@ -482099,13 +481087,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01902e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01902e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01902c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01902c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12337" sboTerm="SBO:0000176" id="MAR12337" name="oxidation of midazolam to 1-OH-midazolam in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12337" sboTerm="SBO:0000176" id="R_MAR12337" name="oxidation of midazolam to 1-OH-midazolam in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -482114,7 +481102,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12337">
+            <rdf:Description rdf:about="#R_MAR12337">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.13.-"/>
@@ -482127,15 +481115,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03756r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03756r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01903r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01903r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -482144,7 +481132,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12338" sboTerm="SBO:0000185" id="MAR12338" name="efflux of 1-OH-midazolam into portal blood" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12338" sboTerm="SBO:0000185" id="R_MAR12338" name="efflux of 1-OH-midazolam into portal blood" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -482153,7 +481141,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12338">
+            <rdf:Description rdf:about="#R_MAR12338">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/1OHMDZtep"/>
@@ -482164,13 +481152,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01903c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01903c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01903e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01903e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12339" sboTerm="SBO:0000176" id="MAR12339" name="conversion of 2-hydroxy-atorvastatin-acid to its lactone form in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12339" sboTerm="SBO:0000176" id="R_MAR12339" name="conversion of 2-hydroxy-atorvastatin-acid to its lactone form in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -482179,7 +481167,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12339">
+            <rdf:Description rdf:about="#R_MAR12339">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/2HATVLAChc"/>
@@ -482190,16 +481178,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03177c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03177c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01334c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03179c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03179c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12340" sboTerm="SBO:0000176" id="MAR12340" name="glucuronidation of 2-hydroxy-atorvastatin-acid in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12340" sboTerm="SBO:0000176" id="R_MAR12340" name="glucuronidation of 2-hydroxy-atorvastatin-acid in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -482208,7 +481196,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12340">
+            <rdf:Description rdf:about="#R_MAR12340">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.17"/>
@@ -482220,12 +481208,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03109r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03177r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03109r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03177r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03106r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03178r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03178r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -482239,7 +481227,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12341" sboTerm="SBO:0000185" id="MAR12341" name="efflux of 2-hydroxy-atorvastatin-acyl-glucuronide into bile" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12341" sboTerm="SBO:0000185" id="R_MAR12341" name="efflux of 2-hydroxy-atorvastatin-acyl-glucuronide into bile" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -482248,7 +481236,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12341">
+            <rdf:Description rdf:about="#R_MAR12341">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/2HATVACIDGLUCteb"/>
@@ -482259,15 +481247,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03178c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03178c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03178e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03178e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -482276,7 +481264,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12342" sboTerm="SBO:0000176" id="MAR12342" name="oxidation of atorvastatin acid to 2-hydroxy-atorvastatin-acid in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12342" sboTerm="SBO:0000176" id="R_MAR12342" name="oxidation of atorvastatin acid to 2-hydroxy-atorvastatin-acid in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -482285,7 +481273,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12342">
+            <rdf:Description rdf:about="#R_MAR12342">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.13.-"/>
@@ -482298,15 +481286,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03476r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03476r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03177r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03177r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -482316,7 +481304,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12344" sboTerm="SBO:0000185" id="MAR12344" name="efflux of 2-hydroxy-atorvastatin-acid into bile" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12344" sboTerm="SBO:0000185" id="R_MAR12344" name="efflux of 2-hydroxy-atorvastatin-acid into bile" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -482325,7 +481313,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12344">
+            <rdf:Description rdf:about="#R_MAR12344">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/2HATVACIDteb"/>
@@ -482336,15 +481324,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03177c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03177c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03177e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03177e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -482353,7 +481341,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12345" sboTerm="SBO:0000185" id="MAR12345" name="efflux of 2-hydroxy-atorvastatin-acid into portal blood" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12345" sboTerm="SBO:0000185" id="R_MAR12345" name="efflux of 2-hydroxy-atorvastatin-acid into portal blood" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -482362,7 +481350,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12345">
+            <rdf:Description rdf:about="#R_MAR12345">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/2HATVACIDtep"/>
@@ -482373,13 +481361,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03177c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03177c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03177e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03177e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12346" sboTerm="SBO:0000185" id="MAR12346" name="uptake of 2-hydroxy-atorvastatin-acid into hepatocytes" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12346" sboTerm="SBO:0000185" id="R_MAR12346" name="uptake of 2-hydroxy-atorvastatin-acid into hepatocytes" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -482388,7 +481376,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12346">
+            <rdf:Description rdf:about="#R_MAR12346">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/2HATVACIDthc"/>
@@ -482399,12 +481387,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03177e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03177e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03177c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03177c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -482416,7 +481404,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12347" sboTerm="SBO:0000176" id="MAR12347" name="glucuronidation of 2-hydroxy-atorvastatin-lactone in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12347" sboTerm="SBO:0000176" id="R_MAR12347" name="glucuronidation of 2-hydroxy-atorvastatin-lactone in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -482425,7 +481413,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12347">
+            <rdf:Description rdf:about="#R_MAR12347">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.17"/>
@@ -482437,13 +481425,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03109r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03179r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03109r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03179r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03180r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03180r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -482457,7 +481445,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12348" sboTerm="SBO:0000185" id="MAR12348" name="efflux of 2-hydroxy-atorvastatin-lactone-glucuronide into bile" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12348" sboTerm="SBO:0000185" id="R_MAR12348" name="efflux of 2-hydroxy-atorvastatin-lactone-glucuronide into bile" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -482466,7 +481454,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12348">
+            <rdf:Description rdf:about="#R_MAR12348">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/2HATVLACGLUCteb"/>
@@ -482477,15 +481465,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03180c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03180c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03180e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03180e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -482494,7 +481482,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12349" sboTerm="SBO:0000176" id="MAR12349" name="oxidation of atorvastatin lactone to 2-hydroxy-atorvastatin-lactone in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12349" sboTerm="SBO:0000176" id="R_MAR12349" name="oxidation of atorvastatin lactone to 2-hydroxy-atorvastatin-lactone in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -482503,7 +481491,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12349">
+            <rdf:Description rdf:about="#R_MAR12349">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.13.-"/>
@@ -482516,15 +481504,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03479r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03479r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03179r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03179r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -482533,7 +481521,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12350" sboTerm="SBO:0000185" id="MAR12350" name="efflux of 2-hydroxy-atorvastatin-lactone into bile" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12350" sboTerm="SBO:0000185" id="R_MAR12350" name="efflux of 2-hydroxy-atorvastatin-lactone into bile" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -482542,7 +481530,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12350">
+            <rdf:Description rdf:about="#R_MAR12350">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/2HATVLACteb"/>
@@ -482553,15 +481541,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03179c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03179c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03179e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03179e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -482570,7 +481558,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12351" sboTerm="SBO:0000185" id="MAR12351" name="efflux of 2-hydroxy-atorvastatin-lactone into portal blood" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12351" sboTerm="SBO:0000185" id="R_MAR12351" name="efflux of 2-hydroxy-atorvastatin-lactone into portal blood" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -482579,7 +481567,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12351">
+            <rdf:Description rdf:about="#R_MAR12351">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/2HATVLACtep"/>
@@ -482590,13 +481578,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03179c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03179c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03179e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03179e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12352" sboTerm="SBO:0000185" id="MAR12352" name="uptake of 2-hydroxy-atorvastatin-lactone into hepatocytes" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12352" sboTerm="SBO:0000185" id="R_MAR12352" name="uptake of 2-hydroxy-atorvastatin-lactone into hepatocytes" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -482605,7 +481593,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12352">
+            <rdf:Description rdf:about="#R_MAR12352">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/2HATVLACthc"/>
@@ -482616,12 +481604,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03179e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03179e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03179c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03179c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -482633,7 +481621,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12353" sboTerm="SBO:0000185" id="MAR12353" name="release of 2-hydroxy S-ibuprofen-glucuronide into hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12353" sboTerm="SBO:0000185" id="R_MAR12353" name="release of 2-hydroxy S-ibuprofen-glucuronide into hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -482642,7 +481630,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12353">
+            <rdf:Description rdf:about="#R_MAR12353">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/2HIBUPGLUC_Sthv"/>
@@ -482653,13 +481641,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03185c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03185c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03185e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03185e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12354" sboTerm="SBO:0000185" id="MAR12354" name="release of R-2-hydroxy-ibuprofen into hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12354" sboTerm="SBO:0000185" id="R_MAR12354" name="release of R-2-hydroxy-ibuprofen into hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -482668,7 +481656,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12354">
+            <rdf:Description rdf:about="#R_MAR12354">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/2HIBUP_Rthv"/>
@@ -482679,13 +481667,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03183c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03183c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03183e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03183e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12355" sboTerm="SBO:0000176" id="MAR12355" name="glucuronidation of S-2-hydroxy ibuprofen" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12355" sboTerm="SBO:0000176" id="R_MAR12355" name="glucuronidation of S-2-hydroxy ibuprofen" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -482694,7 +481682,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12355">
+            <rdf:Description rdf:about="#R_MAR12355">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.17"/>
@@ -482706,12 +481694,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03109r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03184r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03109r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03184r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03106r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03185r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03185r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -482726,7 +481714,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12356" sboTerm="SBO:0000185" id="MAR12356" name="release of S-2-hydroxy-ibuprofen into hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12356" sboTerm="SBO:0000185" id="R_MAR12356" name="release of S-2-hydroxy-ibuprofen into hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -482735,7 +481723,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12356">
+            <rdf:Description rdf:about="#R_MAR12356">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/2HIBUP_Sthv"/>
@@ -482746,13 +481734,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03184c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03184c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03184e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03184e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12357" sboTerm="SBO:0000176" id="MAR12357" name="demethylation of tacrolimus to 31-O-desmethyl tacrolimus in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12357" sboTerm="SBO:0000176" id="R_MAR12357" name="demethylation of tacrolimus to 31-O-desmethyl tacrolimus in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -482761,7 +481749,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12357">
+            <rdf:Description rdf:about="#R_MAR12357">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/31DMThr"/>
@@ -482772,16 +481760,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02871r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03959r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02871r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03959r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02877r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03196r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02877r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03196r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12358" sboTerm="SBO:0000185" id="MAR12358" name="efflux of 31-O-desmethyl tacrolimus into intestinal lumen by ABC transporter" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12358" sboTerm="SBO:0000185" id="R_MAR12358" name="efflux of 31-O-desmethyl tacrolimus into intestinal lumen by ABC transporter" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -482790,7 +481778,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12358">
+            <rdf:Description rdf:about="#R_MAR12358">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/31DMTtu"/>
@@ -482801,18 +481789,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03196c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03196c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03196e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03196e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12359" sboTerm="SBO:0000185" id="MAR12359" name="exit of 31-O-desmethyl tacrolimus into portal blood" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12359" sboTerm="SBO:0000185" id="R_MAR12359" name="exit of 31-O-desmethyl tacrolimus into portal blood" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -482821,7 +481809,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12359">
+            <rdf:Description rdf:about="#R_MAR12359">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/31DMTtep"/>
@@ -482832,13 +481820,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03196c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03196c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03196e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03196e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12360" sboTerm="SBO:0000176" id="MAR12360" name="conversion of pravastatin to 3-alpha-5-beta-dihydroxy pravastatin in entercoytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12360" sboTerm="SBO:0000176" id="R_MAR12360" name="conversion of pravastatin to 3-alpha-5-beta-dihydroxy pravastatin in entercoytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -482847,7 +481835,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12360">
+            <rdf:Description rdf:about="#R_MAR12360">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.13.-"/>
@@ -482859,15 +481847,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555r" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02630r" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03916r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555r" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02630r" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03916r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040r" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02554r" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03198r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02554r" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03198r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -482876,7 +481864,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12361" sboTerm="SBO:0000185" id="MAR12361" name="3-alpha-5-beta-dihydroxy pravastatin exit into portal blood" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12361" sboTerm="SBO:0000185" id="R_MAR12361" name="3-alpha-5-beta-dihydroxy pravastatin exit into portal blood" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -482885,7 +481873,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12361">
+            <rdf:Description rdf:about="#R_MAR12361">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/35DHPVStep"/>
@@ -482896,13 +481884,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03198c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03198c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03198e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03198e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12362" sboTerm="SBO:0000185" id="MAR12362" name="uptake of 3-alpha-5-beta-dihydroxy pravastatin by hepatocytes" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12362" sboTerm="SBO:0000185" id="R_MAR12362" name="uptake of 3-alpha-5-beta-dihydroxy pravastatin by hepatocytes" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -482911,7 +481899,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12362">
+            <rdf:Description rdf:about="#R_MAR12362">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/35DHPVSthc"/>
@@ -482922,12 +481910,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03198e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03198e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03198c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03198c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -482939,7 +481927,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12363" sboTerm="SBO:0000176" id="MAR12363" name="formation of 3,5-dihydrodoil simvastatin" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12363" sboTerm="SBO:0000176" id="R_MAR12363" name="formation of 3,5-dihydrodoil simvastatin" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -482948,7 +481936,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12363">
+            <rdf:Description rdf:about="#R_MAR12363">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.13.-"/>
@@ -482961,14 +481949,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03934r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03934r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02554r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03199r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03199r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -482978,7 +481966,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12364" sboTerm="SBO:0000185" id="MAR12364" name="efflux of 3,5-dihydrodiol-simvastatin-lactone form into bile" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12364" sboTerm="SBO:0000185" id="R_MAR12364" name="efflux of 3,5-dihydrodiol-simvastatin-lactone form into bile" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -482988,7 +481976,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12364">
+            <rdf:Description rdf:about="#R_MAR12364">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/35DSMVteb"/>
@@ -482999,18 +481987,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03199c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03199c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03199e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03199e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12365" sboTerm="SBO:0000185" id="MAR12365" name="release of 3-hydroxy S-ibuprofen-glucuronide into hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12365" sboTerm="SBO:0000185" id="R_MAR12365" name="release of 3-hydroxy S-ibuprofen-glucuronide into hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -483019,7 +482007,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12365">
+            <rdf:Description rdf:about="#R_MAR12365">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/3HIBUPGLUC_Sthv"/>
@@ -483030,13 +482018,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03225c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03225c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03225e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03225e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12366" sboTerm="SBO:0000185" id="MAR12366" name="release of R-3-hydroxy-ibuprofen into hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12366" sboTerm="SBO:0000185" id="R_MAR12366" name="release of R-3-hydroxy-ibuprofen into hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -483045,7 +482033,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12366">
+            <rdf:Description rdf:about="#R_MAR12366">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/3HIBUP_Rthv"/>
@@ -483056,13 +482044,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03223c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03223c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03223e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03223e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12367" sboTerm="SBO:0000176" id="MAR12367" name="glucuronidation of S-3-hydroxy ibuprofen" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12367" sboTerm="SBO:0000176" id="R_MAR12367" name="glucuronidation of S-3-hydroxy ibuprofen" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -483071,7 +482059,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12367">
+            <rdf:Description rdf:about="#R_MAR12367">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.17"/>
@@ -483083,12 +482071,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03109r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03224r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03109r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03224r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03106r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03225r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03225r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -483103,7 +482091,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12368" sboTerm="SBO:0000185" id="MAR12368" name="release of S-3-hydroxy-ibuprofen into hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12368" sboTerm="SBO:0000185" id="R_MAR12368" name="release of S-3-hydroxy-ibuprofen into hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -483112,7 +482100,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12368">
+            <rdf:Description rdf:about="#R_MAR12368">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/3HIBUP_Sthv"/>
@@ -483123,13 +482111,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03224c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03224c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03224e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03224e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12370" sboTerm="SBO:0000185" id="MAR12370" name="release of 3-hydroxy-lovastatin acid form into bile" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12370" sboTerm="SBO:0000185" id="R_MAR12370" name="release of 3-hydroxy-lovastatin acid form into bile" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -483138,7 +482126,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12370">
+            <rdf:Description rdf:about="#R_MAR12370">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/3HLVSTACtbc"/>
@@ -483149,18 +482137,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03229c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03229c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03229e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03229e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12371" sboTerm="SBO:0000176" id="MAR12371" name="beta oxidation of 3-S-hydroxy-pravastatin-CoA to tatranor-CoA derivative in hepatocytes, mitochondria" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12371" sboTerm="SBO:0000176" id="R_MAR12371" name="beta oxidation of 3-S-hydroxy-pravastatin-CoA to tatranor-CoA derivative in hepatocytes, mitochondria" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -483169,7 +482157,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12371">
+            <rdf:Description rdf:about="#R_MAR12371">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.99.-"/>
@@ -483184,22 +482172,22 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597m" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM01802m" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03236m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597m" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01802m" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03236m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261m" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM01803m" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02630m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03238m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261m" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01803m" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02630m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03238m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12372" sboTerm="SBO:0000176" id="MAR12372" name="beta oxidation of 3-S-hydroxy-pravastatin-CoA to tetranor-CoA in hepatocytes, peroxisomes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12372" sboTerm="SBO:0000176" id="R_MAR12372" name="beta oxidation of 3-S-hydroxy-pravastatin-CoA to tetranor-CoA in hepatocytes, peroxisomes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -483208,7 +482196,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12372">
+            <rdf:Description rdf:about="#R_MAR12372">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.3.6"/>
@@ -483223,18 +482211,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597x" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02040x" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02552x" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02630x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03236x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597x" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02040x" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02552x" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02630x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03236x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261x" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02039x" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02041x" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02553x" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03238x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261x" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02039x" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02041x" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02553x" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03238x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -483243,7 +482231,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12373" sboTerm="SBO:0000185" id="MAR12373" name="efflux of 3-S-hydroxy-pravastatin-tetranor into bile" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12373" sboTerm="SBO:0000185" id="R_MAR12373" name="efflux of 3-S-hydroxy-pravastatin-tetranor into bile" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -483252,7 +482240,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12373">
+            <rdf:Description rdf:about="#R_MAR12373">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/3HPVSTETteb"/>
@@ -483263,15 +482251,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03237c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03237c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03237e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03237e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -483281,7 +482269,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12374" sboTerm="SBO:0000185" id="MAR12374" name="exit of 3-S-hydroxy-pravastatin-tetranor into hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12374" sboTerm="SBO:0000185" id="R_MAR12374" name="exit of 3-S-hydroxy-pravastatin-tetranor into hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -483290,7 +482278,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12374">
+            <rdf:Description rdf:about="#R_MAR12374">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/3HPVSTETtev"/>
@@ -483301,13 +482289,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03237c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03237c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03237e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03237e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12375" sboTerm="SBO:0000176" id="MAR12375" name="oxidation of pravastatin to 3-hydroxy pravastatin in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12375" sboTerm="SBO:0000176" id="R_MAR12375" name="oxidation of pravastatin to 3-hydroxy pravastatin in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -483316,7 +482304,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12375">
+            <rdf:Description rdf:about="#R_MAR12375">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.13.-"/>
@@ -483329,15 +482317,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03916r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03916r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03235r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03235r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -483346,7 +482334,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12376" sboTerm="SBO:0000185" id="MAR12376" name="efflux of 3-S-hydroxy-pravastatin into bile" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12376" sboTerm="SBO:0000185" id="R_MAR12376" name="efflux of 3-S-hydroxy-pravastatin into bile" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -483355,7 +482343,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12376">
+            <rdf:Description rdf:about="#R_MAR12376">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/3HPVSteb"/>
@@ -483366,15 +482354,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03235c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03235c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03235e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03235e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -483384,7 +482372,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12377" sboTerm="SBO:0000185" id="MAR12377" name="3-hydroxy pravastatin exit into portal blood" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12377" sboTerm="SBO:0000185" id="R_MAR12377" name="3-hydroxy pravastatin exit into portal blood" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -483393,7 +482381,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12377">
+            <rdf:Description rdf:about="#R_MAR12377">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/3HPVStep"/>
@@ -483404,13 +482392,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03235c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03235c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03235e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03235e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12378" sboTerm="SBO:0000185" id="MAR12378" name="uptake of 3-hydroxy pravastatin by hepatocytes" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12378" sboTerm="SBO:0000185" id="R_MAR12378" name="uptake of 3-hydroxy pravastatin by hepatocytes" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -483419,7 +482407,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12378">
+            <rdf:Description rdf:about="#R_MAR12378">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/3HPVSthc"/>
@@ -483430,12 +482418,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03235e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03235e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03235c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03235c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -483447,7 +482435,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12380" sboTerm="SBO:0000185" id="MAR12380" name="efflux of 3-hydroxy-simvastatin-acid form into bile" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12380" sboTerm="SBO:0000185" id="R_MAR12380" name="efflux of 3-hydroxy-simvastatin-acid form into bile" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -483457,7 +482445,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12380">
+            <rdf:Description rdf:about="#R_MAR12380">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/3HSMVACIDteb"/>
@@ -483468,18 +482456,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03240c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03240c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03240e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03240e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12381" sboTerm="SBO:0000176" id="MAR12381" name="acid catalyzed rearrangement of 6-beta-hydroxy-simvastatin to 3-hydroxy simvastatin" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12381" sboTerm="SBO:0000176" id="R_MAR12381" name="acid catalyzed rearrangement of 6-beta-hydroxy-simvastatin to 3-hydroxy simvastatin" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -483488,7 +482476,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12381">
+            <rdf:Description rdf:about="#R_MAR12381">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.13.-"/>
@@ -483501,10 +482489,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03300r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03300r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03239r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03239r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -483514,7 +482502,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12382" sboTerm="SBO:0000176" id="MAR12382" name="isomerization of pravastatin to 3-alpha-iso-pravastatin in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12382" sboTerm="SBO:0000176" id="R_MAR12382" name="isomerization of pravastatin to 3-alpha-iso-pravastatin in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -483523,7 +482511,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12382">
+            <rdf:Description rdf:about="#R_MAR12382">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/3ISPVShc"/>
@@ -483534,13 +482522,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03916c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03916c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03241c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03241c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12383" sboTerm="SBO:0000185" id="MAR12383" name="efflux of 3-alpha-iso-pravastatin into bile" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12383" sboTerm="SBO:0000185" id="R_MAR12383" name="efflux of 3-alpha-iso-pravastatin into bile" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -483549,7 +482537,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12383">
+            <rdf:Description rdf:about="#R_MAR12383">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/3ISPVSteb"/>
@@ -483560,15 +482548,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03241c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03241c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03241e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03241e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -483578,7 +482566,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12384" sboTerm="SBO:0000185" id="MAR12384" name="3-alpha-iso-pravastatin exit into portal blood" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12384" sboTerm="SBO:0000185" id="R_MAR12384" name="3-alpha-iso-pravastatin exit into portal blood" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -483587,7 +482575,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12384">
+            <rdf:Description rdf:about="#R_MAR12384">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/3ISPVStep"/>
@@ -483598,13 +482586,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03241c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03241c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03241e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03241e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12385" sboTerm="SBO:0000185" id="MAR12385" name="uptake of 3-alpha-iso-pravastatin by hepatocytes" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12385" sboTerm="SBO:0000185" id="R_MAR12385" name="uptake of 3-alpha-iso-pravastatin by hepatocytes" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -483613,7 +482601,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12385">
+            <rdf:Description rdf:about="#R_MAR12385">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/3ISPVSthc"/>
@@ -483624,12 +482612,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03241e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03241e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03241c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03241c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -483641,7 +482629,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12386" sboTerm="SBO:0000176" id="MAR12386" name="formation of 3-methoxy-acetaminophen in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12386" sboTerm="SBO:0000176" id="R_MAR12386" name="formation of 3-methoxy-acetaminophen in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -483650,7 +482638,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12386">
+            <rdf:Description rdf:about="#R_MAR12386">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/3MEACMPhc"/>
@@ -483661,16 +482649,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02877c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03256c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02877c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03256c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02871c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03244c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02871c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03244c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12387" sboTerm="SBO:0000176" id="MAR12387" name="oxidation of acetaminophen to 3-OH-acetaminophen in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12387" sboTerm="SBO:0000176" id="R_MAR12387" name="oxidation of acetaminophen to 3-OH-acetaminophen in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -483679,7 +482667,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12387">
+            <rdf:Description rdf:about="#R_MAR12387">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.13.-"/>
@@ -483691,21 +482679,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03402r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03402r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03256r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03256r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Cyp18a1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12388" sboTerm="SBO:0000185" id="MAR12388" name="efflux of 3-OH-acetaminophen into hepatic vein" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12388" sboTerm="SBO:0000185" id="R_MAR12388" name="efflux of 3-OH-acetaminophen into hepatic vein" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -483714,7 +482702,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12388">
+            <rdf:Description rdf:about="#R_MAR12388">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/3OHACMPtev"/>
@@ -483725,18 +482713,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03256c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03256c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03256e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03256e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12389" sboTerm="SBO:0000185" id="MAR12389" name="excretion of 4-beta-OH-gliclazide into bile" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12389" sboTerm="SBO:0000185" id="R_MAR12389" name="excretion of 4-beta-OH-gliclazide into bile" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -483746,7 +482734,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12389">
+            <rdf:Description rdf:about="#R_MAR12389">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/4BHGLZABCt"/>
@@ -483757,18 +482745,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03269c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03269c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03269e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03269e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12390" sboTerm="SBO:0000176" id="MAR12390" name="oxidation of gliclazide to 4-beta-OH-gliclazide in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12390" sboTerm="SBO:0000176" id="R_MAR12390" name="oxidation of gliclazide to 4-beta-OH-gliclazide in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -483777,7 +482765,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12390">
+            <rdf:Description rdf:about="#R_MAR12390">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/4BHGLZhr"/>
@@ -483788,18 +482776,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03634r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03634r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03269r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03269r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12391" sboTerm="SBO:0000185" id="MAR12391" name="excretion of 4-beta-OH-gliclazide into hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12391" sboTerm="SBO:0000185" id="R_MAR12391" name="excretion of 4-beta-OH-gliclazide into hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -483808,7 +482796,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12391">
+            <rdf:Description rdf:about="#R_MAR12391">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/4BHGLZtev"/>
@@ -483819,13 +482807,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03269c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03269c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03269e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03269e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12392" sboTerm="SBO:0000176" id="MAR12392" name="oxidation of atorvastatin acid to 4-hydroxy-atorvastatin-acid in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12392" sboTerm="SBO:0000176" id="R_MAR12392" name="oxidation of atorvastatin acid to 4-hydroxy-atorvastatin-acid in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -483834,7 +482822,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12392">
+            <rdf:Description rdf:about="#R_MAR12392">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.13.-"/>
@@ -483847,15 +482835,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03476r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03476r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03271r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03271r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -483865,7 +482853,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12394" sboTerm="SBO:0000185" id="MAR12394" name="efflux of 4-hydroxy-atorvastatin-acid into bile" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12394" sboTerm="SBO:0000185" id="R_MAR12394" name="efflux of 4-hydroxy-atorvastatin-acid into bile" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -483874,7 +482862,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12394">
+            <rdf:Description rdf:about="#R_MAR12394">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/4HATVACIDteb"/>
@@ -483885,15 +482873,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03271c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03271c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03271e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03271e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -483902,7 +482890,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12395" sboTerm="SBO:0000185" id="MAR12395" name="efflux of 4-hydroxy-atorvastatin-acid into portal blood" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12395" sboTerm="SBO:0000185" id="R_MAR12395" name="efflux of 4-hydroxy-atorvastatin-acid into portal blood" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -483911,7 +482899,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12395">
+            <rdf:Description rdf:about="#R_MAR12395">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/4HATVACIDtep"/>
@@ -483922,13 +482910,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03271c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03271c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03271e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03271e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12396" sboTerm="SBO:0000185" id="MAR12396" name="uptake of 4-hydroxy-atorvastatin-acid into hepatocytes" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12396" sboTerm="SBO:0000185" id="R_MAR12396" name="uptake of 4-hydroxy-atorvastatin-acid into hepatocytes" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -483937,7 +482925,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12396">
+            <rdf:Description rdf:about="#R_MAR12396">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/4HATVACIDthc"/>
@@ -483948,12 +482936,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03271e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03271e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03271c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03271c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -483965,7 +482953,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12397" sboTerm="SBO:0000176" id="MAR12397" name="oxidation of atorvastatin lactone to 4-hydroxy-atorvastatin-lactone in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12397" sboTerm="SBO:0000176" id="R_MAR12397" name="oxidation of atorvastatin lactone to 4-hydroxy-atorvastatin-lactone in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -483974,7 +482962,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12397">
+            <rdf:Description rdf:about="#R_MAR12397">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.13.-"/>
@@ -483987,15 +482975,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03479r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03479r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03272r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03272r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -484004,7 +482992,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12398" sboTerm="SBO:0000176" id="MAR12398" name="conversion of 4-hydroxy-atorvastatin-lactone to its acid form in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12398" sboTerm="SBO:0000176" id="R_MAR12398" name="conversion of 4-hydroxy-atorvastatin-lactone to its acid form in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -484013,7 +483001,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12398">
+            <rdf:Description rdf:about="#R_MAR12398">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/4HATVLAChc"/>
@@ -484024,16 +483012,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03271c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03271c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01334c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03272c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03272c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12399" sboTerm="SBO:0000185" id="MAR12399" name="efflux of 4-hydroxy-atorvastatin-lactone into bile" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12399" sboTerm="SBO:0000185" id="R_MAR12399" name="efflux of 4-hydroxy-atorvastatin-lactone into bile" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -484042,7 +483030,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12399">
+            <rdf:Description rdf:about="#R_MAR12399">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/4HATVLACteb"/>
@@ -484053,15 +483041,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03272c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03272c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03272e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03272e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -484070,7 +483058,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12400" sboTerm="SBO:0000185" id="MAR12400" name="efflux of 4-hydroxy-atorvastatin-lactone into portal blood" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12400" sboTerm="SBO:0000185" id="R_MAR12400" name="efflux of 4-hydroxy-atorvastatin-lactone into portal blood" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -484079,7 +483067,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12400">
+            <rdf:Description rdf:about="#R_MAR12400">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/4HATVLACtep"/>
@@ -484090,13 +483078,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03272c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03272c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03272e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03272e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12401" sboTerm="SBO:0000185" id="MAR12401" name="uptake of 4-hydroxy-atorvastatin-lactone into hepatocytes" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12401" sboTerm="SBO:0000185" id="R_MAR12401" name="uptake of 4-hydroxy-atorvastatin-lactone into hepatocytes" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -484105,7 +483093,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12401">
+            <rdf:Description rdf:about="#R_MAR12401">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/4HATVLACthc"/>
@@ -484116,12 +483104,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03272e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03272e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03272c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03272c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -484133,7 +483121,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12402" sboTerm="SBO:0000185" id="MAR12402" name="efflux of 4-OH-midazolam-glucuronide into hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12402" sboTerm="SBO:0000185" id="R_MAR12402" name="efflux of 4-OH-midazolam-glucuronide into hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -484142,7 +483130,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12402">
+            <rdf:Description rdf:about="#R_MAR12402">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/4HMDGLUCtev"/>
@@ -484153,13 +483141,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03275c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03275c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03275e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03275e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12403" sboTerm="SBO:0000176" id="MAR12403" name="glucuronidation of 4-OH-midazolam in enterocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12403" sboTerm="SBO:0000176" id="R_MAR12403" name="glucuronidation of 4-OH-midazolam in enterocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -484168,7 +483156,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12403">
+            <rdf:Description rdf:about="#R_MAR12403">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/4HMDZGLUChr"/>
@@ -484179,13 +483167,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03109r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03278r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03109r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03278r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03275r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03275r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -484202,7 +483190,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12404" sboTerm="SBO:0000176" id="MAR12404" name="oxidation of midazolam to 4-OH-midazolam in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12404" sboTerm="SBO:0000176" id="R_MAR12404" name="oxidation of midazolam to 4-OH-midazolam in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -484211,7 +483199,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12404">
+            <rdf:Description rdf:about="#R_MAR12404">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.13.-"/>
@@ -484224,15 +483212,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03756r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03756r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03278r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03278r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -484241,7 +483229,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12405" sboTerm="SBO:0000185" id="MAR12405" name="efflux of 4-OH-midazolam into hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12405" sboTerm="SBO:0000185" id="R_MAR12405" name="efflux of 4-OH-midazolam into hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -484250,7 +483238,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12405">
+            <rdf:Description rdf:about="#R_MAR12405">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/4OHMDZtev"/>
@@ -484261,13 +483249,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03278c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03278c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03278e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03278e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12406" sboTerm="SBO:0000176" id="MAR12406" name="oxidation of triol metabolite to 3-keto-5,6,-dihydroxy-pravastatin in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12406" sboTerm="SBO:0000176" id="R_MAR12406" name="oxidation of triol metabolite to 3-keto-5,6,-dihydroxy-pravastatin in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -484276,7 +483264,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12406">
+            <rdf:Description rdf:about="#R_MAR12406">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.13.-"/>
@@ -484288,15 +483276,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM04007r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04007r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040r" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02554r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03279r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02554r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03279r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -484305,7 +483293,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12407" sboTerm="SBO:0000185" id="MAR12407" name="efflux of 3-keto-5,6,-dihydroxy-pravastatin into bile" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12407" sboTerm="SBO:0000185" id="R_MAR12407" name="efflux of 3-keto-5,6,-dihydroxy-pravastatin into bile" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -484314,7 +483302,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12407">
+            <rdf:Description rdf:about="#R_MAR12407">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/56DHPVSteb"/>
@@ -484325,15 +483313,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03279c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03279c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03279e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03279e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -484343,7 +483331,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12408" sboTerm="SBO:0000185" id="MAR12408" name="exit of 3-keto-5,6,-dihydroxy-pravastatin into hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12408" sboTerm="SBO:0000185" id="R_MAR12408" name="exit of 3-keto-5,6,-dihydroxy-pravastatin into hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -484352,7 +483340,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12408">
+            <rdf:Description rdf:about="#R_MAR12408">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/56DHPVStev"/>
@@ -484363,13 +483351,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03279c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03279c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03279e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03279e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12409" sboTerm="SBO:0000176" id="MAR12409" name="oxidation of 3-alpha-iso-pravastatin to 5,6-epoxy-3-alpha-iso-pravastatin in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12409" sboTerm="SBO:0000176" id="R_MAR12409" name="oxidation of 3-alpha-iso-pravastatin to 5,6-epoxy-3-alpha-iso-pravastatin in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -484378,7 +483366,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12409">
+            <rdf:Description rdf:about="#R_MAR12409">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.13.-"/>
@@ -484390,15 +483378,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03241r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03241r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03280r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03280r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -484407,7 +483395,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12410" sboTerm="SBO:0000185" id="MAR12410" name="efflux of 5,6-epoxy-3-alpha-iso-pravastatin into bile" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12410" sboTerm="SBO:0000185" id="R_MAR12410" name="efflux of 5,6-epoxy-3-alpha-iso-pravastatin into bile" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -484416,7 +483404,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12410">
+            <rdf:Description rdf:about="#R_MAR12410">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/56EPPVSteb"/>
@@ -484427,15 +483415,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03280c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03280c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03280e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03280e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -484445,7 +483433,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12411" sboTerm="SBO:0000185" id="MAR12411" name="exit of 5,6-epoxy-3-alpha-iso-pravastatin into hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12411" sboTerm="SBO:0000185" id="R_MAR12411" name="exit of 5,6-epoxy-3-alpha-iso-pravastatin into hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -484454,7 +483442,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12411">
+            <rdf:Description rdf:about="#R_MAR12411">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/56EPPVStev"/>
@@ -484465,13 +483453,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03280c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03280c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03280e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03280e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12412" sboTerm="SBO:0000176" id="MAR12412" name="glucuronidation of 5-hydroxy-fluvastatin" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12412" sboTerm="SBO:0000176" id="R_MAR12412" name="glucuronidation of 5-hydroxy-fluvastatin" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -484480,7 +483468,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12412">
+            <rdf:Description rdf:about="#R_MAR12412">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/5OHFVSGLUhc"/>
@@ -484491,16 +483479,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03109r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03285r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03109r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03285r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03286r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03286r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12413" sboTerm="SBO:0000185" id="MAR12413" name="exit of 5-hydroxy-fluvastatin-glucuronide into hepatic vein for excretion in urine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12413" sboTerm="SBO:0000185" id="R_MAR12413" name="exit of 5-hydroxy-fluvastatin-glucuronide into hepatic vein for excretion in urine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -484509,7 +483497,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12413">
+            <rdf:Description rdf:about="#R_MAR12413">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/5OHFVSGLUtev"/>
@@ -484520,13 +483508,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03286c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03286c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03286e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03286e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12414" sboTerm="SBO:0000176" id="MAR12414" name="oxidation of fluvastatin to 5-hydroxy-fluvastatin in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12414" sboTerm="SBO:0000176" id="R_MAR12414" name="oxidation of fluvastatin to 5-hydroxy-fluvastatin in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -484535,7 +483523,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12414">
+            <rdf:Description rdf:about="#R_MAR12414">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.13.-"/>
@@ -484548,15 +483536,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03579r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03579r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03285r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03285r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -484566,7 +483554,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12415" sboTerm="SBO:0000185" id="MAR12415" name="efflux of 5-hydroxy-fluvastatin into bile for excretion into faeces" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12415" sboTerm="SBO:0000185" id="R_MAR12415" name="efflux of 5-hydroxy-fluvastatin into bile for excretion into faeces" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -484576,7 +483564,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12415">
+            <rdf:Description rdf:about="#R_MAR12415">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/5OHFVSteb"/>
@@ -484587,18 +483575,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03285c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03285e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03285e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12416" sboTerm="SBO:0000185" id="MAR12416" name="excretion of 6-alpha-OH-gliclazide into bile" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12416" sboTerm="SBO:0000185" id="R_MAR12416" name="excretion of 6-alpha-OH-gliclazide into bile" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -484608,7 +483596,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12416">
+            <rdf:Description rdf:about="#R_MAR12416">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/6AHGLZABCt"/>
@@ -484619,18 +483607,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03289c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03289c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03289e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03289e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12417" sboTerm="SBO:0000176" id="MAR12417" name="oxidation of gliclazide to 6-alpha-OH-gliclazide in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12417" sboTerm="SBO:0000176" id="R_MAR12417" name="oxidation of gliclazide to 6-alpha-OH-gliclazide in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -484639,7 +483627,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12417">
+            <rdf:Description rdf:about="#R_MAR12417">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/6AHGLZhr"/>
@@ -484650,18 +483638,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03634r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03634r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03289r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03289r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12418" sboTerm="SBO:0000185" id="MAR12418" name="excretion of 6-alpha-OH-gliclazide into hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12418" sboTerm="SBO:0000185" id="R_MAR12418" name="excretion of 6-alpha-OH-gliclazide into hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -484670,7 +483658,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12418">
+            <rdf:Description rdf:about="#R_MAR12418">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/6AHGLZtev"/>
@@ -484681,13 +483669,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03289c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03289c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03289e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03289e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12419" sboTerm="SBO:0000185" id="MAR12419" name="excretion of 6-beta-OH-gliclazide into bile" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12419" sboTerm="SBO:0000185" id="R_MAR12419" name="excretion of 6-beta-OH-gliclazide into bile" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -484697,7 +483685,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12419">
+            <rdf:Description rdf:about="#R_MAR12419">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/6BHGLZABCt"/>
@@ -484708,18 +483696,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03290c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03290c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03290e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03290e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12420" sboTerm="SBO:0000185" id="MAR12420" name="excretion of 6-beta-OH-gliclazide-glucuronide into bile" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12420" sboTerm="SBO:0000185" id="R_MAR12420" name="excretion of 6-beta-OH-gliclazide-glucuronide into bile" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -484729,7 +483717,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12420">
+            <rdf:Description rdf:about="#R_MAR12420">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/6BHGLZGLCABCt"/>
@@ -484740,18 +483728,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03291c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03291c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03291e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03291e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12421" sboTerm="SBO:0000176" id="MAR12421" name="glucuronidation of 6-beta-OH-gliclazide-glucuronide in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12421" sboTerm="SBO:0000176" id="R_MAR12421" name="glucuronidation of 6-beta-OH-gliclazide-glucuronide in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -484760,7 +483748,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12421">
+            <rdf:Description rdf:about="#R_MAR12421">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/6BHGLZGLChr"/>
@@ -484771,16 +483759,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03109r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03290r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03109r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03290r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03291r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03291r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12422" sboTerm="SBO:0000185" id="MAR12422" name="excretion of 6-beta-OH-gliclazide-glucuronide into hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12422" sboTerm="SBO:0000185" id="R_MAR12422" name="excretion of 6-beta-OH-gliclazide-glucuronide into hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -484789,7 +483777,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12422">
+            <rdf:Description rdf:about="#R_MAR12422">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/6BHGLZGLCtev"/>
@@ -484800,13 +483788,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03291c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03291c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03291e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03291e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12423" sboTerm="SBO:0000176" id="MAR12423" name="oxidation of gliclazide to 6-beta-OH-gliclazide in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12423" sboTerm="SBO:0000176" id="R_MAR12423" name="oxidation of gliclazide to 6-beta-OH-gliclazide in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -484815,7 +483803,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12423">
+            <rdf:Description rdf:about="#R_MAR12423">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.13.-"/>
@@ -484828,21 +483816,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03634r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03634r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03290r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03290r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Cyp18a1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12424" sboTerm="SBO:0000185" id="MAR12424" name="excretion of 6-beta-OH-gliclazide into hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12424" sboTerm="SBO:0000185" id="R_MAR12424" name="excretion of 6-beta-OH-gliclazide into hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -484851,7 +483839,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12424">
+            <rdf:Description rdf:about="#R_MAR12424">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/6BHGLZtev"/>
@@ -484862,13 +483850,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03290c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03290c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03290e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03290e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12426" sboTerm="SBO:0000185" id="MAR12426" name="efflux of 6-beta-carboxy-simvastatin-acid form into bile" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12426" sboTerm="SBO:0000185" id="R_MAR12426" name="efflux of 6-beta-carboxy-simvastatin-acid form into bile" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -484878,7 +483866,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12426">
+            <rdf:Description rdf:about="#R_MAR12426">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/6CSMVACIDteb"/>
@@ -484889,18 +483877,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03293c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03293c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03293e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03293e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12427" sboTerm="SBO:0000176" id="MAR12427" name="oxidation of 6-exomethylene simvastatin to 6-beta-hydroxy carboxy simvastatin lactone form" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12427" sboTerm="SBO:0000176" id="R_MAR12427" name="oxidation of 6-exomethylene simvastatin to 6-beta-hydroxy carboxy simvastatin lactone form" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -484909,7 +483897,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12427">
+            <rdf:Description rdf:about="#R_MAR12427">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.13.-"/>
@@ -484922,14 +483910,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02555r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630r" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03304r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630r" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03304r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02041r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03292r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03292r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -484939,7 +483927,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12428" sboTerm="SBO:0000185" id="MAR12428" name="efflux of 6-epipravastatin into bile" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12428" sboTerm="SBO:0000185" id="R_MAR12428" name="efflux of 6-epipravastatin into bile" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -484948,7 +483936,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12428">
+            <rdf:Description rdf:about="#R_MAR12428">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/6EPSteb"/>
@@ -484959,15 +483947,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03294c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03294c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03294e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03294e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -484977,7 +483965,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12429" sboTerm="SBO:0000185" id="MAR12429" name="6-epi-pravastatin exit into portal blood" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12429" sboTerm="SBO:0000185" id="R_MAR12429" name="6-epi-pravastatin exit into portal blood" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -484986,7 +483974,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12429">
+            <rdf:Description rdf:about="#R_MAR12429">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/6EPVStep"/>
@@ -484997,13 +483985,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03294c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03294c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03294e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03294e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12430" sboTerm="SBO:0000176" id="MAR12430" name="isomerization of pravastatin to 6-epi-pravastatin in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12430" sboTerm="SBO:0000176" id="R_MAR12430" name="isomerization of pravastatin to 6-epi-pravastatin in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -485012,7 +484000,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12430">
+            <rdf:Description rdf:about="#R_MAR12430">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/6EPVShc"/>
@@ -485023,13 +484011,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03916c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03916c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03294c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03294c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12431" sboTerm="SBO:0000185" id="MAR12431" name="uptake of 6-epi-pravastatin by hepatocytes" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12431" sboTerm="SBO:0000185" id="R_MAR12431" name="uptake of 6-epi-pravastatin by hepatocytes" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -485038,7 +484026,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12431">
+            <rdf:Description rdf:about="#R_MAR12431">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/6EPVSthc"/>
@@ -485049,12 +484037,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03294e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03294e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03294c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03294c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -485066,7 +484054,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12433" sboTerm="SBO:0000185" id="MAR12433" name="uptake of 6-beta-hydroxy-lovastatin by hepatocytes" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12433" sboTerm="SBO:0000185" id="R_MAR12433" name="uptake of 6-beta-hydroxy-lovastatin by hepatocytes" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -485075,7 +484063,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12433">
+            <rdf:Description rdf:about="#R_MAR12433">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/6HLVSTthep"/>
@@ -485086,13 +484074,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03296e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03296e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03296c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03296c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12435" sboTerm="SBO:0000185" id="MAR12435" name="efflux of 6-beta-hydroxy-methyl-simvastatin-acid into bile" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12435" sboTerm="SBO:0000185" id="R_MAR12435" name="efflux of 6-beta-hydroxy-methyl-simvastatin-acid into bile" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -485102,7 +484090,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12435">
+            <rdf:Description rdf:about="#R_MAR12435">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/6HMSMVACIDteb"/>
@@ -485113,18 +484101,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03299c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03299c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03299e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03299e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12436" sboTerm="SBO:0000176" id="MAR12436" name="oxidation of 6-exomethylene simvastatin to 6-beta-hydroxy methyl simvastatin" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12436" sboTerm="SBO:0000176" id="R_MAR12436" name="oxidation of 6-exomethylene simvastatin to 6-beta-hydroxy methyl simvastatin" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -485133,7 +484121,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12436">
+            <rdf:Description rdf:about="#R_MAR12436">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.13.-"/>
@@ -485146,16 +484134,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03304r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03304r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02041r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03298r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03298r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -485165,7 +484153,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12438" sboTerm="SBO:0000185" id="MAR12438" name="efflux of 6-beta-hydroxy simvastatin acid into bile" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12438" sboTerm="SBO:0000185" id="R_MAR12438" name="efflux of 6-beta-hydroxy simvastatin acid into bile" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -485175,7 +484163,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12438">
+            <rdf:Description rdf:about="#R_MAR12438">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/6HSMVACIDteb"/>
@@ -485186,18 +484174,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03301c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03301c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03301e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03301e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12439" sboTerm="SBO:0000176" id="MAR12439" name="oxidation of simvastatin to 6-beta-hydroxy simvastatin" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12439" sboTerm="SBO:0000176" id="R_MAR12439" name="oxidation of simvastatin to 6-beta-hydroxy simvastatin" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -485206,7 +484194,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12439">
+            <rdf:Description rdf:about="#R_MAR12439">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.13.-"/>
@@ -485219,15 +484207,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03934r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03934r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03300r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03300r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -485237,7 +484225,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12441" sboTerm="SBO:0000185" id="MAR12441" name="release of 6-exomethylene-lovastatin-acid form into bile" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12441" sboTerm="SBO:0000185" id="R_MAR12441" name="release of 6-exomethylene-lovastatin-acid form into bile" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -485245,7 +484233,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12441">
+            <rdf:Description rdf:about="#R_MAR12441">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/6MELVACtbc"/>
@@ -485256,21 +484244,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03302c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03302c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03302e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03302e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Mdr50"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12442" sboTerm="SBO:0000185" id="MAR12442" name="uptake of 6-exomethylene-lovastatin by hepatocytes" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12442" sboTerm="SBO:0000185" id="R_MAR12442" name="uptake of 6-exomethylene-lovastatin by hepatocytes" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -485279,7 +484267,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12442">
+            <rdf:Description rdf:about="#R_MAR12442">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/6MELVSTthep"/>
@@ -485290,13 +484278,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03303e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03303e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03303c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03303c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12443" sboTerm="SBO:0000176" id="MAR12443" name="oxidation of simvastatin to 6-exomethylene lactone form" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12443" sboTerm="SBO:0000176" id="R_MAR12443" name="oxidation of simvastatin to 6-exomethylene lactone form" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -485305,7 +484293,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12443">
+            <rdf:Description rdf:about="#R_MAR12443">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.13.-"/>
@@ -485318,15 +484306,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03934r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03934r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040r" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02554r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03304r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02554r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03304r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -485336,7 +484324,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12444" sboTerm="SBO:0000176" id="MAR12444" name="glucuronidation of 6-hydroxy-fluvastatin" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12444" sboTerm="SBO:0000176" id="R_MAR12444" name="glucuronidation of 6-hydroxy-fluvastatin" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -485345,7 +484333,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12444">
+            <rdf:Description rdf:about="#R_MAR12444">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/6OHFVSGLUhc"/>
@@ -485356,16 +484344,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03109r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03285r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03109r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03285r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03306r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03306r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12445" sboTerm="SBO:0000185" id="MAR12445" name="exit of 6-hydroxy-fluvastatin-glucuronide into hepatic vein for excretion in urine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12445" sboTerm="SBO:0000185" id="R_MAR12445" name="exit of 6-hydroxy-fluvastatin-glucuronide into hepatic vein for excretion in urine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -485374,7 +484362,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12445">
+            <rdf:Description rdf:about="#R_MAR12445">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/6OHFVSGLUtev"/>
@@ -485385,13 +484373,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03306c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03306c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03306e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03306e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12446" sboTerm="SBO:0000176" id="MAR12446" name="oxidation of fluvastatin to 6-hydroxy-fluvastatin in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12446" sboTerm="SBO:0000176" id="R_MAR12446" name="oxidation of fluvastatin to 6-hydroxy-fluvastatin in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -485400,7 +484388,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12446">
+            <rdf:Description rdf:about="#R_MAR12446">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.13.-"/>
@@ -485412,21 +484400,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03579r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03579r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03305r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03305r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Cyp18a1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12447" sboTerm="SBO:0000185" id="MAR12447" name="efflux of 6-hydroxy-fluvastatin into bile for excretion into faeces" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12447" sboTerm="SBO:0000185" id="R_MAR12447" name="efflux of 6-hydroxy-fluvastatin into bile for excretion into faeces" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -485436,7 +484424,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12447">
+            <rdf:Description rdf:about="#R_MAR12447">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/6OHFVSteb"/>
@@ -485447,18 +484435,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03305c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03305c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03305e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03305e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12448" sboTerm="SBO:0000185" id="MAR12448" name="excretion of 7-alpha-OH-gliclazide into bile" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12448" sboTerm="SBO:0000185" id="R_MAR12448" name="excretion of 7-alpha-OH-gliclazide into bile" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -485468,7 +484456,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12448">
+            <rdf:Description rdf:about="#R_MAR12448">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/7AHGLZABCt"/>
@@ -485479,18 +484467,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03307c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03307c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03307e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03307e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12449" sboTerm="SBO:0000176" id="MAR12449" name="oxidation of gliclazide to 7-alpha-OH-gliclazide in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12449" sboTerm="SBO:0000176" id="R_MAR12449" name="oxidation of gliclazide to 7-alpha-OH-gliclazide in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -485499,7 +484487,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12449">
+            <rdf:Description rdf:about="#R_MAR12449">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/7AHGLZhr"/>
@@ -485510,18 +484498,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03634r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03634r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03307r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03307r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12450" sboTerm="SBO:0000185" id="MAR12450" name="excretion of 7-alpha-OH-gliclazide into hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12450" sboTerm="SBO:0000185" id="R_MAR12450" name="excretion of 7-alpha-OH-gliclazide into hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -485530,7 +484518,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12450">
+            <rdf:Description rdf:about="#R_MAR12450">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/7AHGLZtev"/>
@@ -485541,13 +484529,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03307c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03307c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03307e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03307e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12451" sboTerm="SBO:0000185" id="MAR12451" name="excretion of 7-beta-OH-gliclazide into bile" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12451" sboTerm="SBO:0000185" id="R_MAR12451" name="excretion of 7-beta-OH-gliclazide into bile" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -485557,7 +484545,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12451">
+            <rdf:Description rdf:about="#R_MAR12451">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/7BHGLZABCt"/>
@@ -485568,18 +484556,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03308c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03308c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03308e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03308e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12452" sboTerm="SBO:0000185" id="MAR12452" name="excretion of 7-beta-OH-gliclazide-glucuronide into bile" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12452" sboTerm="SBO:0000185" id="R_MAR12452" name="excretion of 7-beta-OH-gliclazide-glucuronide into bile" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -485589,7 +484577,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12452">
+            <rdf:Description rdf:about="#R_MAR12452">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/7BHGLZGLCABCt"/>
@@ -485600,18 +484588,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03309c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03309c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03309e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03309e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12453" sboTerm="SBO:0000176" id="MAR12453" name="glucuronidation of 7-beta-OH-gliclazide-glucuronide in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12453" sboTerm="SBO:0000176" id="R_MAR12453" name="glucuronidation of 7-beta-OH-gliclazide-glucuronide in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -485620,7 +484608,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12453">
+            <rdf:Description rdf:about="#R_MAR12453">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/7BHGLZGLChr"/>
@@ -485631,16 +484619,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03109r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03308r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03109r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03308r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03309r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03309r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12454" sboTerm="SBO:0000185" id="MAR12454" name="excretion of 7-beta-OH-gliclazide-glucuronide into hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12454" sboTerm="SBO:0000185" id="R_MAR12454" name="excretion of 7-beta-OH-gliclazide-glucuronide into hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -485649,7 +484637,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12454">
+            <rdf:Description rdf:about="#R_MAR12454">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/7BHGLZGLCtev"/>
@@ -485660,13 +484648,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03309c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03309c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03309e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03309e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12455" sboTerm="SBO:0000176" id="MAR12455" name="oxidation of gliclazide to 7-beta-OH-gliclazide in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12455" sboTerm="SBO:0000176" id="R_MAR12455" name="oxidation of gliclazide to 7-beta-OH-gliclazide in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -485675,7 +484663,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12455">
+            <rdf:Description rdf:about="#R_MAR12455">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.13.-"/>
@@ -485688,21 +484676,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03634r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03634r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03308r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03308r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Cyp18a1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12456" sboTerm="SBO:0000185" id="MAR12456" name="excretion of 7-beta-OH-gliclazide into hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12456" sboTerm="SBO:0000185" id="R_MAR12456" name="excretion of 7-beta-OH-gliclazide into hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -485711,7 +484699,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12456">
+            <rdf:Description rdf:about="#R_MAR12456">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/7BHGLZtev"/>
@@ -485722,13 +484710,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03308c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03308c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03308e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03308e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12457" sboTerm="SBO:0000176" id="MAR12457" name="oxidation of 3-alpha-iso-pravastatin to 7-hydroxy-3-alpha-iso-pravastatin in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12457" sboTerm="SBO:0000176" id="R_MAR12457" name="oxidation of 3-alpha-iso-pravastatin to 7-hydroxy-3-alpha-iso-pravastatin in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -485737,7 +484725,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12457">
+            <rdf:Description rdf:about="#R_MAR12457">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.13.-"/>
@@ -485749,15 +484737,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03241r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03241r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03312r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03312r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -485766,7 +484754,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12458" sboTerm="SBO:0000185" id="MAR12458" name="efflux of 7-hydroxy-3-alpha-iso-pravastatin into bile" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12458" sboTerm="SBO:0000185" id="R_MAR12458" name="efflux of 7-hydroxy-3-alpha-iso-pravastatin into bile" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -485775,7 +484763,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12458">
+            <rdf:Description rdf:about="#R_MAR12458">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/7HPVSteb"/>
@@ -485786,15 +484774,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03312c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03312c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03312e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03312e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -485804,7 +484792,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12459" sboTerm="SBO:0000185" id="MAR12459" name="exit of 7-hydroxy-3-alpha-iso-pravastatin into hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12459" sboTerm="SBO:0000185" id="R_MAR12459" name="exit of 7-hydroxy-3-alpha-iso-pravastatin into hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -485813,7 +484801,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12459">
+            <rdf:Description rdf:about="#R_MAR12459">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/7HPVStev"/>
@@ -485824,13 +484812,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03312c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03312c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03312e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03312e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12460" sboTerm="SBO:0000185" id="MAR12460" name="uptake of allopurinol by the enterocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12460" sboTerm="SBO:0000185" id="R_MAR12460" name="uptake of allopurinol by the enterocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -485839,7 +484827,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12460">
+            <rdf:Description rdf:about="#R_MAR12460">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ALLOP2tu"/>
@@ -485850,18 +484838,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03418e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03418e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03418c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03418c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CNT1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12461" sboTerm="SBO:0000185" id="MAR12461" name="efflux of acetaminophen by P-gp from the enterocytes into lumen" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12461" sboTerm="SBO:0000185" id="R_MAR12461" name="efflux of acetaminophen by P-gp from the enterocytes into lumen" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -485870,7 +484858,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12461">
+            <rdf:Description rdf:about="#R_MAR12461">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.6.3.44"/>
@@ -485882,21 +484870,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03402c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03402c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03402e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03402e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Mdr50"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12462" sboTerm="SBO:0000176" id="MAR12462" name="glucuronidation of acetaminophen in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12462" sboTerm="SBO:0000176" id="R_MAR12462" name="glucuronidation of acetaminophen in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -485905,7 +484893,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12462">
+            <rdf:Description rdf:about="#R_MAR12462">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.17"/>
@@ -485917,13 +484905,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03109r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03402r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03109r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03402r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03403r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03403r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -485939,7 +484927,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12463" sboTerm="SBO:0000185" id="MAR12463" name="uptake of acetaminophen-glutathione-conjugate into the enterocytes" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12463" sboTerm="SBO:0000185" id="R_MAR12463" name="uptake of acetaminophen-glutathione-conjugate into the enterocytes" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -485948,7 +484936,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12463">
+            <rdf:Description rdf:about="#R_MAR12463">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ACMPGLUTdt"/>
@@ -485959,13 +484947,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03404e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03404e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03404c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03404c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12464" sboTerm="SBO:0000185" id="MAR12464" name="efflux of acetaminophen-glutathione-conjugate from enterocytes into portal blood" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12464" sboTerm="SBO:0000185" id="R_MAR12464" name="efflux of acetaminophen-glutathione-conjugate from enterocytes into portal blood" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -485974,7 +484962,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12464">
+            <rdf:Description rdf:about="#R_MAR12464">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ACMPGLUTtep"/>
@@ -485985,21 +484973,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03404c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03404c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03404e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03404e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="MRP"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12465" sboTerm="SBO:0000185" id="MAR12465" name="uptake of acetaminophen-glutathione-conjugate by the hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12465" sboTerm="SBO:0000185" id="R_MAR12465" name="uptake of acetaminophen-glutathione-conjugate by the hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -486008,7 +484996,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12465">
+            <rdf:Description rdf:about="#R_MAR12465">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ACMPGLUTthc"/>
@@ -486019,21 +485007,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03404e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03404e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03404c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03404c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="MRP"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12466" sboTerm="SBO:0000185" id="MAR12466" name="efflux of acetaminophen-glucuronide-conjugate from enterocytes into portal blood" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12466" sboTerm="SBO:0000185" id="R_MAR12466" name="efflux of acetaminophen-glucuronide-conjugate from enterocytes into portal blood" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -486042,7 +485030,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12466">
+            <rdf:Description rdf:about="#R_MAR12466">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ACMPGLUtep"/>
@@ -486053,21 +485041,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03403c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03403c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03403e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03403e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="MRP"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12467" sboTerm="SBO:0000185" id="MAR12467" name="uptake of acetaminophen-glucuronide-conjugate by the hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12467" sboTerm="SBO:0000185" id="R_MAR12467" name="uptake of acetaminophen-glucuronide-conjugate by the hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -486076,7 +485064,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12467">
+            <rdf:Description rdf:about="#R_MAR12467">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ACMPGLUthc"/>
@@ -486087,21 +485075,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03403e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03403e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03403c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03403c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="MRP"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12468" sboTerm="SBO:0000176" id="MAR12468" name="sulphation of acetaminophen in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12468" sboTerm="SBO:0000176" id="R_MAR12468" name="sulphation of acetaminophen in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -486110,7 +485098,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12468">
+            <rdf:Description rdf:about="#R_MAR12468">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.8.2.1"/>
@@ -486122,19 +485110,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02682c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03402c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02682c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03402c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02681c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03958c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02681c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03958c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="St1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12469" sboTerm="SBO:0000185" id="MAR12469" name="uptake of acetaminophen by enterocytes" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12469" sboTerm="SBO:0000185" id="R_MAR12469" name="uptake of acetaminophen by enterocytes" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -486143,7 +485131,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12469">
+            <rdf:Description rdf:about="#R_MAR12469">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ACMPdt"/>
@@ -486154,13 +485142,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03402e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03402e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03402c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03402c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12470" sboTerm="SBO:0000185" id="MAR12470" name="uptake of acetaminophen by the hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12470" sboTerm="SBO:0000185" id="R_MAR12470" name="uptake of acetaminophen by the hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -486169,7 +485157,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12470">
+            <rdf:Description rdf:about="#R_MAR12470">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ACMPthc"/>
@@ -486180,21 +485168,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03402e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03402e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03402c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03402c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="MRP"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12471" sboTerm="SBO:0000185" id="MAR12471" name="uptake of allopurinol by the enterocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12471" sboTerm="SBO:0000185" id="R_MAR12471" name="uptake of allopurinol by the enterocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -486203,7 +485191,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12471">
+            <rdf:Description rdf:about="#R_MAR12471">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ALLOP1tu"/>
@@ -486214,12 +485202,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03418e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03418e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03418c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03418c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -486228,7 +485216,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12472" sboTerm="SBO:0000176" id="MAR12472" name="oxidation of allopurinol to oxypurinol in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12472" sboTerm="SBO:0000176" id="R_MAR12472" name="oxidation of allopurinol to oxypurinol in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -486237,7 +485225,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12472">
+            <rdf:Description rdf:about="#R_MAR12472">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.17.3.2"/>
@@ -486250,19 +485238,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03418c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03418c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02041c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03801c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03801c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="ry"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12473" sboTerm="SBO:0000185" id="MAR12473" name="uptake of allopurinol by the hepatocytes" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12473" sboTerm="SBO:0000185" id="R_MAR12473" name="uptake of allopurinol by the hepatocytes" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -486272,7 +485260,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12473">
+            <rdf:Description rdf:about="#R_MAR12473">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ALLOPtepvb"/>
@@ -486283,16 +485271,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03418e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03418e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03418c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03418c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG3168"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12474" sboTerm="SBO:0000176" id="MAR12474" name="alternative pathway for formation of AM19 from AM1 in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12474" sboTerm="SBO:0000176" id="R_MAR12474" name="alternative pathway for formation of AM19 from AM1 in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -486301,7 +485289,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12474">
+            <rdf:Description rdf:about="#R_MAR12474">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.13.-"/>
@@ -486314,15 +485302,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03429r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03429r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03420r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03420r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -486331,7 +485319,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12475" sboTerm="SBO:0000176" id="MAR12475" name="oxidation of AM9 to AM19 (cyclosporine) in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12475" sboTerm="SBO:0000176" id="R_MAR12475" name="oxidation of AM9 to AM19 (cyclosporine) in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -486340,7 +485328,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12475">
+            <rdf:Description rdf:about="#R_MAR12475">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/AM19CShr"/>
@@ -486351,18 +485339,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03432r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03432r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03420r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03420r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12476" sboTerm="SBO:0000185" id="MAR12476" name="efflux of AM19-cyclosporine into bile" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12476" sboTerm="SBO:0000185" id="R_MAR12476" name="efflux of AM19-cyclosporine into bile" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -486372,7 +485360,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12476">
+            <rdf:Description rdf:about="#R_MAR12476">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/AM19CSteb"/>
@@ -486383,18 +485371,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03420c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03420c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03420e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03420e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12477" sboTerm="SBO:0000176" id="MAR12477" name="demethylation of AM1A to AM1A4N in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12477" sboTerm="SBO:0000176" id="R_MAR12477" name="demethylation of AM1A to AM1A4N in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -486403,7 +485391,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12477">
+            <rdf:Description rdf:about="#R_MAR12477">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/AM1A4NCShc"/>
@@ -486414,16 +485402,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02871c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03423c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02871c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03423c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02877c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03421c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02877c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03421c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12478" sboTerm="SBO:0000185" id="MAR12478" name="efflux of AM1A4N-cyclosporine into bile" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12478" sboTerm="SBO:0000185" id="R_MAR12478" name="efflux of AM1A4N-cyclosporine into bile" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -486433,7 +485421,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12478">
+            <rdf:Description rdf:about="#R_MAR12478">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/AM1A4NCSteb"/>
@@ -486444,18 +485432,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03421c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03421c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03421e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03421e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12479" sboTerm="SBO:0000176" id="MAR12479" name="oxidation of AM1c to AM1Ac in hepatocytes (alternative mechanism)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12479" sboTerm="SBO:0000176" id="R_MAR12479" name="oxidation of AM1c to AM1Ac in hepatocytes (alternative mechanism)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -486464,7 +485452,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12479">
+            <rdf:Description rdf:about="#R_MAR12479">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/AM1ACCShr"/>
@@ -486475,16 +485463,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02630r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03427r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03427r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03422r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03422r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12480" sboTerm="SBO:0000185" id="MAR12480" name="efflux of AM1Ac-cyclosporine into hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12480" sboTerm="SBO:0000185" id="R_MAR12480" name="efflux of AM1Ac-cyclosporine into hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -486494,7 +485482,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12480">
+            <rdf:Description rdf:about="#R_MAR12480">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/AM1ACCStev"/>
@@ -486505,13 +485493,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03422c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03422c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03422e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03422e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12481" sboTerm="SBO:0000176" id="MAR12481" name="formation of AM1A-cyclosporine in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12481" sboTerm="SBO:0000176" id="R_MAR12481" name="formation of AM1A-cyclosporine in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -486520,7 +485508,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12481">
+            <rdf:Description rdf:about="#R_MAR12481">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/AM1ACShr"/>
@@ -486531,17 +485519,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02555r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03424r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03424r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03423r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03423r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12482" sboTerm="SBO:0000185" id="MAR12482" name="efflux of AM1A-cyclosporine into bile" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12482" sboTerm="SBO:0000185" id="R_MAR12482" name="efflux of AM1A-cyclosporine into bile" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -486551,7 +485539,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12482">
+            <rdf:Description rdf:about="#R_MAR12482">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/AM1ACSteb"/>
@@ -486562,18 +485550,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03423c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03423c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03423e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03423e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12483" sboTerm="SBO:0000185" id="MAR12483" name="efflux of AM1A (cyclosporine) into portal blood" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12483" sboTerm="SBO:0000185" id="R_MAR12483" name="efflux of AM1A (cyclosporine) into portal blood" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -486582,7 +485570,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12483">
+            <rdf:Description rdf:about="#R_MAR12483">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/AM1ACStep"/>
@@ -486593,13 +485581,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03423c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03423c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03423e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03423e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12484" sboTerm="SBO:0000176" id="MAR12484" name="formation of AM1AL-cyclosporine in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12484" sboTerm="SBO:0000176" id="R_MAR12484" name="formation of AM1AL-cyclosporine in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -486608,7 +485596,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12484">
+            <rdf:Description rdf:about="#R_MAR12484">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/AM1ALCShr"/>
@@ -486619,16 +485607,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03429c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03429c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03424c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03424c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12485" sboTerm="SBO:0000185" id="MAR12485" name="efflux of AM1AL-cyclosporine into bile" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12485" sboTerm="SBO:0000185" id="R_MAR12485" name="efflux of AM1AL-cyclosporine into bile" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -486638,7 +485626,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12485">
+            <rdf:Description rdf:about="#R_MAR12485">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/AM1ALCSteb"/>
@@ -486649,18 +485637,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03424c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03424c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03424e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03424e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12486" sboTerm="SBO:0000185" id="MAR12486" name="efflux of AM1AL (cyclosporine) into portal blood" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12486" sboTerm="SBO:0000185" id="R_MAR12486" name="efflux of AM1AL (cyclosporine) into portal blood" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -486669,7 +485657,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12486">
+            <rdf:Description rdf:about="#R_MAR12486">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/AM1ALCStep"/>
@@ -486680,13 +485668,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03424c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03424c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03424e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03424e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12487" sboTerm="SBO:0000176" id="MAR12487" name="demethylation of AM1c9 to AM1c4N9 in hepatocytes (alternative mechanism)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12487" sboTerm="SBO:0000176" id="R_MAR12487" name="demethylation of AM1c9 to AM1c4N9 in hepatocytes (alternative mechanism)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -486695,7 +485683,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12487">
+            <rdf:Description rdf:about="#R_MAR12487">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/AM1C4N9CShc"/>
@@ -486706,16 +485694,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02871c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03426c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02871c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03426c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02877c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03425c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02877c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03425c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12488" sboTerm="SBO:0000185" id="MAR12488" name="efflux of AM1c4N9-cyclosporine into bile" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12488" sboTerm="SBO:0000185" id="R_MAR12488" name="efflux of AM1c4N9-cyclosporine into bile" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -486725,7 +485713,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12488">
+            <rdf:Description rdf:about="#R_MAR12488">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/AM1C4N9CSteb"/>
@@ -486736,18 +485724,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03425c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03425c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03425e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03425e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12489" sboTerm="SBO:0000176" id="MAR12489" name="oxidation of AM1c to AM1c9 in hepatocytes (alternative mechanism)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12489" sboTerm="SBO:0000176" id="R_MAR12489" name="oxidation of AM1c to AM1c9 in hepatocytes (alternative mechanism)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -486756,7 +485744,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12489">
+            <rdf:Description rdf:about="#R_MAR12489">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/AM1C9CShr"/>
@@ -486767,18 +485755,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03427r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03427r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03426r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03426r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12490" sboTerm="SBO:0000185" id="MAR12490" name="efflux of AM1c9-cyclosporine into bile" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12490" sboTerm="SBO:0000185" id="R_MAR12490" name="efflux of AM1c9-cyclosporine into bile" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -486788,7 +485776,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12490">
+            <rdf:Description rdf:about="#R_MAR12490">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/AM1C9CSteb"/>
@@ -486799,18 +485787,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03426c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03426c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03426e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03426e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12491" sboTerm="SBO:0000185" id="MAR12491" name="efflux of AM1c9-cyclosporine into hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12491" sboTerm="SBO:0000185" id="R_MAR12491" name="efflux of AM1c9-cyclosporine into hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -486820,7 +485808,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12491">
+            <rdf:Description rdf:about="#R_MAR12491">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/AM1C9CStev"/>
@@ -486831,13 +485819,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03426c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03426c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03426e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03426e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12492" sboTerm="SBO:0000176" id="MAR12492" name="oxidation of cyclosporine to AM1c in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12492" sboTerm="SBO:0000176" id="R_MAR12492" name="oxidation of cyclosporine to AM1c in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -486846,7 +485834,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12492">
+            <rdf:Description rdf:about="#R_MAR12492">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/AM1CCShr"/>
@@ -486857,18 +485845,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03520r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03520r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03427r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03427r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12493" sboTerm="SBO:0000185" id="MAR12493" name="efflux of AM1c-cyclosporine into bile" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12493" sboTerm="SBO:0000185" id="R_MAR12493" name="efflux of AM1c-cyclosporine into bile" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -486878,7 +485866,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12493">
+            <rdf:Description rdf:about="#R_MAR12493">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/AM1CCSteb"/>
@@ -486889,18 +485877,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03427c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03427c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03427e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03427e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12494" sboTerm="SBO:0000185" id="MAR12494" name="efflux of AM1c-cyclosporine into hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12494" sboTerm="SBO:0000185" id="R_MAR12494" name="efflux of AM1c-cyclosporine into hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -486910,7 +485898,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12494">
+            <rdf:Description rdf:about="#R_MAR12494">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/AM1CCStev"/>
@@ -486921,13 +485909,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03427c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03427c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03427e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03427e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12495" sboTerm="SBO:0000176" id="MAR12495" name="glucuronidation of AM1c in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12495" sboTerm="SBO:0000176" id="R_MAR12495" name="glucuronidation of AM1c in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -486936,7 +485924,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12495">
+            <rdf:Description rdf:about="#R_MAR12495">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/AM1CGLChr"/>
@@ -486947,16 +485935,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03109r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03427r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03109r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03427r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03428r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03428r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12496" sboTerm="SBO:0000185" id="MAR12496" name="efflux of AM1c-glucuronide into bile" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12496" sboTerm="SBO:0000185" id="R_MAR12496" name="efflux of AM1c-glucuronide into bile" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -486966,7 +485954,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12496">
+            <rdf:Description rdf:about="#R_MAR12496">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/AM1CGLCteb"/>
@@ -486977,18 +485965,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03428c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03428c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03428e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03428e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12497" sboTerm="SBO:0000176" id="MAR12497" name="oxidation of cyclosporine to AM1 in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12497" sboTerm="SBO:0000176" id="R_MAR12497" name="oxidation of cyclosporine to AM1 in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -486997,7 +485985,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12497">
+            <rdf:Description rdf:about="#R_MAR12497">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.13.-"/>
@@ -487010,15 +485998,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03520r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03520r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03429r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03429r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -487027,7 +486015,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12498" sboTerm="SBO:0000185" id="MAR12498" name="efflux of AM1 (cyclosporine) into portal blood" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12498" sboTerm="SBO:0000185" id="R_MAR12498" name="efflux of AM1 (cyclosporine) into portal blood" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -487036,7 +486024,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12498">
+            <rdf:Description rdf:about="#R_MAR12498">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/AM1CSAtep"/>
@@ -487047,13 +486035,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03429c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03429c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03429e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03429e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12499" sboTerm="SBO:0000176" id="MAR12499" name="demethylation of AM9 to AM4N9 in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12499" sboTerm="SBO:0000176" id="R_MAR12499" name="demethylation of AM9 to AM4N9 in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -487062,7 +486050,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12499">
+            <rdf:Description rdf:about="#R_MAR12499">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/AM4N9CShc"/>
@@ -487073,16 +486061,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02871c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03432c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02871c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03432c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02877c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03430c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02877c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03430c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12500" sboTerm="SBO:0000176" id="MAR12500" name="oxidation of AM4N to AM4N9 in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12500" sboTerm="SBO:0000176" id="R_MAR12500" name="oxidation of AM4N to AM4N9 in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -487091,7 +486079,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12500">
+            <rdf:Description rdf:about="#R_MAR12500">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/AM4N9CShr"/>
@@ -487102,18 +486090,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03431r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03431r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03430r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03430r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12501" sboTerm="SBO:0000185" id="MAR12501" name="efflux of AM4N9-cyclosporine into hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12501" sboTerm="SBO:0000185" id="R_MAR12501" name="efflux of AM4N9-cyclosporine into hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -487123,7 +486111,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12501">
+            <rdf:Description rdf:about="#R_MAR12501">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/AM4N9CStev"/>
@@ -487134,13 +486122,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03430c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03430c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03430e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03430e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12502" sboTerm="SBO:0000185" id="MAR12502" name="efflux of AM4N9-cyclosporine into bile" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12502" sboTerm="SBO:0000185" id="R_MAR12502" name="efflux of AM4N9-cyclosporine into bile" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -487150,7 +486138,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12502">
+            <rdf:Description rdf:about="#R_MAR12502">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/AM4NC9CSteb"/>
@@ -487161,18 +486149,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03430c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03430c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03430e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03430e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12503" sboTerm="SBO:0000176" id="MAR12503" name="demethylation of cyclosporine to AM4N in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12503" sboTerm="SBO:0000176" id="R_MAR12503" name="demethylation of cyclosporine to AM4N in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -487181,7 +486169,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12503">
+            <rdf:Description rdf:about="#R_MAR12503">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/AM4NCShr"/>
@@ -487192,16 +486180,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02871c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03520c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02871c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03520c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02877c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03431c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02877c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03431c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12504" sboTerm="SBO:0000185" id="MAR12504" name="efflux of AM4N-cyclosporine into bile" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12504" sboTerm="SBO:0000185" id="R_MAR12504" name="efflux of AM4N-cyclosporine into bile" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -487211,7 +486199,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12504">
+            <rdf:Description rdf:about="#R_MAR12504">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/AM4NCSteb"/>
@@ -487222,18 +486210,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03431c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03431c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03431e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03431e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12505" sboTerm="SBO:0000185" id="MAR12505" name="efflux of AM4N (cyclosporine) into portal blood" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12505" sboTerm="SBO:0000185" id="R_MAR12505" name="efflux of AM4N (cyclosporine) into portal blood" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -487242,7 +486230,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12505">
+            <rdf:Description rdf:about="#R_MAR12505">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/AM4NCStep"/>
@@ -487253,13 +486241,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03431c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03431c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03431e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03431e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12506" sboTerm="SBO:0000176" id="MAR12506" name="oxidation of cyclosporine to AM9 in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12506" sboTerm="SBO:0000176" id="R_MAR12506" name="oxidation of cyclosporine to AM9 in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -487268,7 +486256,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12506">
+            <rdf:Description rdf:about="#R_MAR12506">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.13.-"/>
@@ -487281,15 +486269,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03520r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03520r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03432r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03432r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -487298,7 +486286,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12507" sboTerm="SBO:0000185" id="MAR12507" name="efflux of AM9-cyclosporine into bile" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12507" sboTerm="SBO:0000185" id="R_MAR12507" name="efflux of AM9-cyclosporine into bile" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -487308,7 +486296,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12507">
+            <rdf:Description rdf:about="#R_MAR12507">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/AM9CSAteb"/>
@@ -487319,18 +486307,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03432c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03432c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03432e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03432e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12508" sboTerm="SBO:0000185" id="MAR12508" name="efflux of AM9 (cyclosporine) into portal blood" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12508" sboTerm="SBO:0000185" id="R_MAR12508" name="efflux of AM9 (cyclosporine) into portal blood" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -487339,7 +486327,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12508">
+            <rdf:Description rdf:about="#R_MAR12508">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/AM9CSAtep"/>
@@ -487350,13 +486338,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03432c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03432c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03432e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03432e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12509" sboTerm="SBO:0000185" id="MAR12509" name="uptake of atorvastatin by enterocytes by MCT1" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12509" sboTerm="SBO:0000185" id="R_MAR12509" name="uptake of atorvastatin by enterocytes by MCT1" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -487365,7 +486353,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12509">
+            <rdf:Description rdf:about="#R_MAR12509">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ATVACIDMCTtu"/>
@@ -487376,18 +486364,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03476e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03476e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03476c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03476c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="hrm"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12510" sboTerm="SBO:0000185" id="MAR12510" name="uptake of atorvastatin by enterocytes" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12510" sboTerm="SBO:0000185" id="R_MAR12510" name="uptake of atorvastatin by enterocytes" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -487396,7 +486384,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12510">
+            <rdf:Description rdf:about="#R_MAR12510">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ATVACIDOATPtu"/>
@@ -487407,12 +486395,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03476e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03476e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03476c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03476c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -487424,7 +486412,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12512" sboTerm="SBO:0000176" id="MAR12512" name="spontaneous conversion of atorvastatin ether glucuronide (G1) to atorvastatin-acid" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12512" sboTerm="SBO:0000176" id="R_MAR12512" name="spontaneous conversion of atorvastatin ether glucuronide (G1) to atorvastatin-acid" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -487433,7 +486421,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12512">
+            <rdf:Description rdf:about="#R_MAR12512">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ATVACIDhr"/>
@@ -487444,15 +486432,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040r" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03478r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03478r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01973r" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03476r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01973r" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03476r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12513" sboTerm="SBO:0000185" id="MAR12513" name="passive diffusion of atorvastatin into enterocytes" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12513" sboTerm="SBO:0000185" id="R_MAR12513" name="passive diffusion of atorvastatin into enterocytes" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -487461,7 +486449,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12513">
+            <rdf:Description rdf:about="#R_MAR12513">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ATVACIDtdu"/>
@@ -487472,13 +486460,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03476e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03476e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03476c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03476c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12514" sboTerm="SBO:0000185" id="MAR12514" name="efflux of atorvastatin acid by P-gp from the enterocytes into lumen" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12514" sboTerm="SBO:0000185" id="R_MAR12514" name="efflux of atorvastatin acid by P-gp from the enterocytes into lumen" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -487487,7 +486475,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12514">
+            <rdf:Description rdf:about="#R_MAR12514">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.6.3.44"/>
@@ -487499,21 +486487,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03476c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03476c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03476e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03476e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Mdr50"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12515" sboTerm="SBO:0000176" id="MAR12515" name="glucuronidation of atorvastatin to atorvastatin acyl glucuronide (G2) in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12515" sboTerm="SBO:0000176" id="R_MAR12515" name="glucuronidation of atorvastatin to atorvastatin acyl glucuronide (G2) in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -487522,7 +486510,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12515">
+            <rdf:Description rdf:about="#R_MAR12515">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.17"/>
@@ -487534,12 +486522,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03109r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03476r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03109r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03476r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03106r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03477r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03477r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -487556,7 +486544,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12516" sboTerm="SBO:0000176" id="MAR12516" name="glucuronidation of atorvastatin to atorvastatin ether glucuronide (G1) in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12516" sboTerm="SBO:0000176" id="R_MAR12516" name="glucuronidation of atorvastatin to atorvastatin ether glucuronide (G1) in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -487565,7 +486553,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12516">
+            <rdf:Description rdf:about="#R_MAR12516">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.17"/>
@@ -487577,13 +486565,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03109r" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03476r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03109r" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03476r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039r" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03106r" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03478r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03106r" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03478r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -487597,7 +486585,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12517" sboTerm="SBO:0000176" id="MAR12517" name="glucuronidation of atorvastatin lactone to atorvastain lactone ether glucuronide (G3) in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12517" sboTerm="SBO:0000176" id="R_MAR12517" name="glucuronidation of atorvastatin lactone to atorvastain lactone ether glucuronide (G3) in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -487606,7 +486594,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12517">
+            <rdf:Description rdf:about="#R_MAR12517">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.17"/>
@@ -487618,13 +486606,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03109r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03479r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03109r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03479r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03480r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03480r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -487641,7 +486629,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12518" sboTerm="SBO:0000185" id="MAR12518" name="uptake of atorvastatin-lactone into hepatocytes" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12518" sboTerm="SBO:0000185" id="R_MAR12518" name="uptake of atorvastatin-lactone into hepatocytes" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -487650,7 +486638,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12518">
+            <rdf:Description rdf:about="#R_MAR12518">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ATVLACThc"/>
@@ -487661,12 +486649,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03479e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03479e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03479c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03479c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -487678,7 +486666,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12519" sboTerm="SBO:0000176" id="MAR12519" name="spontaneous conversion of glucuronide (G2) to lactone form of atorvastatin" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12519" sboTerm="SBO:0000176" id="R_MAR12519" name="spontaneous conversion of glucuronide (G2) to lactone form of atorvastatin" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -487687,7 +486675,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12519">
+            <rdf:Description rdf:about="#R_MAR12519">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ATVLACh2r"/>
@@ -487698,14 +486686,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03477r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03477r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01973r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03479r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01973r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03479r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12520" sboTerm="SBO:0000176" id="MAR12520" name="lactonization of atorvastatin in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12520" sboTerm="SBO:0000176" id="R_MAR12520" name="lactonization of atorvastatin in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -487714,7 +486702,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12520">
+            <rdf:Description rdf:about="#R_MAR12520">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ATVLAChc"/>
@@ -487725,16 +486713,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03476c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03476c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01334c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03479c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03479c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12521" sboTerm="SBO:0000176" id="MAR12521" name="spontaneous conversion of atorvastain lactone ether glucuronide (G3) to atorvastatin-lactone in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12521" sboTerm="SBO:0000176" id="R_MAR12521" name="spontaneous conversion of atorvastain lactone ether glucuronide (G3) to atorvastatin-lactone in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -487743,7 +486731,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12521">
+            <rdf:Description rdf:about="#R_MAR12521">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ATVLAChr"/>
@@ -487754,15 +486742,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03480r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03480r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01973r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03479r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01973r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03479r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12522" sboTerm="SBO:0000185" id="MAR12522" name="passive diffusion of atorvastatin lactone into hepatocytes" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12522" sboTerm="SBO:0000185" id="R_MAR12522" name="passive diffusion of atorvastatin lactone into hepatocytes" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -487771,7 +486759,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12522">
+            <rdf:Description rdf:about="#R_MAR12522">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ATVLACtdhc"/>
@@ -487782,13 +486770,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03479e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03479e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03479c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03479c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12523" sboTerm="SBO:0000185" id="MAR12523" name="efflux of atorvastatin lactone by P-gp from the enterocytes into lumen" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12523" sboTerm="SBO:0000185" id="R_MAR12523" name="efflux of atorvastatin lactone by P-gp from the enterocytes into lumen" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -487797,7 +486785,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12523">
+            <rdf:Description rdf:about="#R_MAR12523">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.6.3.44"/>
@@ -487809,21 +486797,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03479c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03479c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03479e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03479e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Mdr50"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12524" sboTerm="SBO:0000185" id="MAR12524" name="efflux of AM19-cyclosporine into hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12524" sboTerm="SBO:0000185" id="R_MAR12524" name="efflux of AM19-cyclosporine into hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -487833,7 +486821,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12524">
+            <rdf:Description rdf:about="#R_MAR12524">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/Am19CStev"/>
@@ -487844,13 +486832,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03420c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03420c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03420e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03420e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12525" sboTerm="SBO:0000185" id="MAR12525" name="efflux of AM1-cyclosporine into bile" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12525" sboTerm="SBO:0000185" id="R_MAR12525" name="efflux of AM1-cyclosporine into bile" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -487860,7 +486848,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12525">
+            <rdf:Description rdf:about="#R_MAR12525">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/Am1CSAteb"/>
@@ -487871,18 +486859,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03429c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03429c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03429e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03429e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12526" sboTerm="SBO:0000185" id="MAR12526" name="release of S-carboxy ibuprofen glucuronide into hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12526" sboTerm="SBO:0000185" id="R_MAR12526" name="release of S-carboxy ibuprofen glucuronide into hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -487891,7 +486879,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12526">
+            <rdf:Description rdf:about="#R_MAR12526">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CARBIBUP_SGLUthv"/>
@@ -487902,13 +486890,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03507c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03507c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03507e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03507e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12527" sboTerm="SBO:0000185" id="MAR12527" name="release of R-carboxy ibuprofen into hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12527" sboTerm="SBO:0000185" id="R_MAR12527" name="release of R-carboxy ibuprofen into hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -487917,7 +486905,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12527">
+            <rdf:Description rdf:about="#R_MAR12527">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CARIBUP_Rthv"/>
@@ -487928,13 +486916,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03505c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03505c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03505e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03505e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12528" sboTerm="SBO:0000176" id="MAR12528" name="glucuronidation of S-carboxy ibuprofen" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12528" sboTerm="SBO:0000176" id="R_MAR12528" name="glucuronidation of S-carboxy ibuprofen" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -487943,7 +486931,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12528">
+            <rdf:Description rdf:about="#R_MAR12528">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.17"/>
@@ -487955,12 +486943,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03109r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03506r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03109r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03506r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03106r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03507r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03507r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -487975,7 +486963,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12529" sboTerm="SBO:0000185" id="MAR12529" name="release of S-carboxy ibuprofen into hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12529" sboTerm="SBO:0000185" id="R_MAR12529" name="release of S-carboxy ibuprofen into hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -487984,7 +486972,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12529">
+            <rdf:Description rdf:about="#R_MAR12529">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CARIBUP_Sthv"/>
@@ -487995,13 +486983,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03506c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03506c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03506e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03506e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12530" sboTerm="SBO:0000185" id="MAR12530" name="excretion of carboxy-gliclazide into bile" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12530" sboTerm="SBO:0000185" id="R_MAR12530" name="excretion of carboxy-gliclazide into bile" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -488011,7 +486999,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12530">
+            <rdf:Description rdf:about="#R_MAR12530">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CRGLZABCt"/>
@@ -488022,18 +487010,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03513c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03513c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03513e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03513e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12531" sboTerm="SBO:0000176" id="MAR12531" name="oxidation of methyl-hydroxy-gliclazide to carboxy-gliclazide in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12531" sboTerm="SBO:0000176" id="R_MAR12531" name="oxidation of methyl-hydroxy-gliclazide to carboxy-gliclazide in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -488042,7 +487030,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12531">
+            <rdf:Description rdf:about="#R_MAR12531">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CRGLZhr"/>
@@ -488053,16 +487041,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02630r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03770r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03770r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03513r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03513r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12532" sboTerm="SBO:0000185" id="MAR12532" name="excretion of carboxy-gliclazide into hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12532" sboTerm="SBO:0000185" id="R_MAR12532" name="excretion of carboxy-gliclazide into hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -488071,7 +487059,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12532">
+            <rdf:Description rdf:about="#R_MAR12532">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CRGLZtev"/>
@@ -488082,13 +487070,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03513c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03513c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03513e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03513e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12533" sboTerm="SBO:0000176" id="MAR12533" name="hydroxylation of cerivastatin-M1 to M24 in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12533" sboTerm="SBO:0000176" id="R_MAR12533" name="hydroxylation of cerivastatin-M1 to M24 in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -488097,7 +487085,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12533">
+            <rdf:Description rdf:about="#R_MAR12533">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.14.1"/>
@@ -488110,15 +487098,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03515r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03515r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03518r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03518r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -488128,7 +487116,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12534" sboTerm="SBO:0000185" id="MAR12534" name="exit of cerivastatin-M1 into hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12534" sboTerm="SBO:0000185" id="R_MAR12534" name="exit of cerivastatin-M1 into hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -488137,7 +487125,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12534">
+            <rdf:Description rdf:about="#R_MAR12534">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CRVS1tev"/>
@@ -488148,13 +487136,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03515c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03515c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03515e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03515e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12535" sboTerm="SBO:0000176" id="MAR12535" name="demethylation of cerivastatin-M23 to M24 in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12535" sboTerm="SBO:0000176" id="R_MAR12535" name="demethylation of cerivastatin-M23 to M24 in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -488163,7 +487151,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12535">
+            <rdf:Description rdf:about="#R_MAR12535">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.14.1"/>
@@ -488176,17 +487164,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039r" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02555r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02871r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03517r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02555r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02871r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03517r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02041r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02877r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03518r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02877r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03518r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -488196,7 +487184,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12536" sboTerm="SBO:0000185" id="MAR12536" name="cerivastatin uptake by hepatocytes by active transport" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12536" sboTerm="SBO:0000185" id="R_MAR12536" name="cerivastatin uptake by hepatocytes by active transport" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -488205,7 +487193,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12536">
+            <rdf:Description rdf:about="#R_MAR12536">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CRVSATPthc"/>
@@ -488216,18 +487204,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03514e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03514e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03514c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03514c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12537" sboTerm="SBO:0000185" id="MAR12537" name="efflux of cerivastatin by P-gp or BCRP from the enterocytes into lumen" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12537" sboTerm="SBO:0000185" id="R_MAR12537" name="efflux of cerivastatin by P-gp or BCRP from the enterocytes into lumen" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -488237,7 +487225,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12537">
+            <rdf:Description rdf:about="#R_MAR12537">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.6.3.44"/>
@@ -488249,15 +487237,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03514c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03514c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03514e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03514e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -488266,7 +487254,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12538" sboTerm="SBO:0000176" id="MAR12538" name="de-lactonization of cerivastatin-M22 to cerivastatin-M1 in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12538" sboTerm="SBO:0000176" id="R_MAR12538" name="de-lactonization of cerivastatin-M22 to cerivastatin-M1 in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -488275,7 +487263,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12538">
+            <rdf:Description rdf:about="#R_MAR12538">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CRVSM1SPhc"/>
@@ -488286,17 +487274,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02871c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03516c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02871c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03516c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02877c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03515c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02877c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03515c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12539" sboTerm="SBO:0000176" id="MAR12539" name="demethylation of cerivastatin to M1 in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12539" sboTerm="SBO:0000176" id="R_MAR12539" name="demethylation of cerivastatin to M1 in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -488305,7 +487293,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12539">
+            <rdf:Description rdf:about="#R_MAR12539">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.14.1"/>
@@ -488318,17 +487306,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039r" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02555r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02871r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03514r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02555r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02871r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03514r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02041r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02877r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03515r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02877r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03515r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -488338,7 +487326,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12540" sboTerm="SBO:0000176" id="MAR12540" name="beta-glucuronidase of cerivastatin-M1-glucuronide to M1 form" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12540" sboTerm="SBO:0000176" id="R_MAR12540" name="beta-glucuronidase of cerivastatin-M1-glucuronide to M1 form" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -488347,7 +487335,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12540">
+            <rdf:Description rdf:about="#R_MAR12540">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.2.1.31"/>
@@ -488359,18 +487347,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03523r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03523r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01973r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03515r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01973r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03515r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG15117"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12541" sboTerm="SBO:0000185" id="MAR12541" name="efflux of cerivastatin-M1 into bile" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12541" sboTerm="SBO:0000185" id="R_MAR12541" name="efflux of cerivastatin-M1 into bile" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -488379,7 +487367,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12541">
+            <rdf:Description rdf:about="#R_MAR12541">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CRVSM1teb"/>
@@ -488390,21 +487378,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03515c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03515c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03515e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03515e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="w"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12542" sboTerm="SBO:0000176" id="MAR12542" name="spontaneous conversion of glucuronide to cerivastatin-M22 in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12542" sboTerm="SBO:0000176" id="R_MAR12542" name="spontaneous conversion of glucuronide to cerivastatin-M22 in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -488413,7 +487401,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12542">
+            <rdf:Description rdf:about="#R_MAR12542">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CRVSM22hc"/>
@@ -488424,17 +487412,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02877r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03523r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02877r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03523r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01973r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02871r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03516r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01973r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02871r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03516r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12543" sboTerm="SBO:0000176" id="MAR12543" name="hydroxylation of cerivastatin to M23 in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12543" sboTerm="SBO:0000176" id="R_MAR12543" name="hydroxylation of cerivastatin to M23 in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -488443,7 +487431,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12543">
+            <rdf:Description rdf:about="#R_MAR12543">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.14.1"/>
@@ -488455,21 +487443,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03514r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03514r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03517r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03517r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Cyp18a1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12544" sboTerm="SBO:0000176" id="MAR12544" name="beta-glucuronidase of cerivastatin-M23-glucuronide to M23 form" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12544" sboTerm="SBO:0000176" id="R_MAR12544" name="beta-glucuronidase of cerivastatin-M23-glucuronide to M23 form" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -488478,7 +487466,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12544">
+            <rdf:Description rdf:about="#R_MAR12544">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.2.1.31"/>
@@ -488490,18 +487478,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03524r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03524r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01973r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03517r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01973r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03517r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG15117"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12545" sboTerm="SBO:0000185" id="MAR12545" name="efflux of cerivastatin-M23 into bile" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12545" sboTerm="SBO:0000185" id="R_MAR12545" name="efflux of cerivastatin-M23 into bile" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -488510,7 +487498,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12545">
+            <rdf:Description rdf:about="#R_MAR12545">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CRVSM23teb"/>
@@ -488521,21 +487509,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03517c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03517c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03517e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03517e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="w"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12546" sboTerm="SBO:0000185" id="MAR12546" name="exit of cerivastatin-M23 into hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12546" sboTerm="SBO:0000185" id="R_MAR12546" name="exit of cerivastatin-M23 into hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -488544,7 +487532,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12546">
+            <rdf:Description rdf:about="#R_MAR12546">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CRVSM23tev"/>
@@ -488555,13 +487543,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03517c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03517c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03517e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03517e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12547" sboTerm="SBO:0000185" id="MAR12547" name="efflux of cerivastatin-M24 into bile" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12547" sboTerm="SBO:0000185" id="R_MAR12547" name="efflux of cerivastatin-M24 into bile" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -488570,7 +487558,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12547">
+            <rdf:Description rdf:about="#R_MAR12547">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CRVSM24teb"/>
@@ -488581,21 +487569,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03518c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03518c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03518e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03518e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="w"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12548" sboTerm="SBO:0000185" id="MAR12548" name="exit of cerivastatin-M24 into hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12548" sboTerm="SBO:0000185" id="R_MAR12548" name="exit of cerivastatin-M24 into hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -488604,7 +487592,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12548">
+            <rdf:Description rdf:about="#R_MAR12548">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CRVSM24tev"/>
@@ -488615,13 +487603,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03518c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03518c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03518e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03518e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12549" sboTerm="SBO:0000176" id="MAR12549" name="spontaneous conversion of glucuronide to cerivastatin-M31 in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12549" sboTerm="SBO:0000176" id="R_MAR12549" name="spontaneous conversion of glucuronide to cerivastatin-M31 in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -488630,7 +487618,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12549">
+            <rdf:Description rdf:about="#R_MAR12549">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CRVSM31hc"/>
@@ -488641,17 +487629,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02877r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03524r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02877r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03524r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01973r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02871r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03519r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01973r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02871r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03519r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12550" sboTerm="SBO:0000185" id="MAR12550" name="cerivastatin uptake by enterocytes" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12550" sboTerm="SBO:0000185" id="R_MAR12550" name="cerivastatin uptake by enterocytes" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -488660,7 +487648,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12550">
+            <rdf:Description rdf:about="#R_MAR12550">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CRVStu"/>
@@ -488671,13 +487659,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03514e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03514e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03514c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03514c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12551" sboTerm="SBO:0000185" id="MAR12551" name="cerivastatin uptake by hepatocytes" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12551" sboTerm="SBO:0000185" id="R_MAR12551" name="cerivastatin uptake by hepatocytes" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -488686,7 +487674,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12551">
+            <rdf:Description rdf:about="#R_MAR12551">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CRVSthc"/>
@@ -488697,12 +487685,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03514e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03514e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03514c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03514c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -488714,7 +487702,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12552" sboTerm="SBO:0000176" id="MAR12552" name="conjugation of cyclosporine with sulphate for excretion in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12552" sboTerm="SBO:0000176" id="R_MAR12552" name="conjugation of cyclosporine with sulphate for excretion in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -488723,7 +487711,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12552">
+            <rdf:Description rdf:about="#R_MAR12552">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CSASULPhc"/>
@@ -488734,16 +487722,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02682c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03520c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02682c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03520c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02681c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03521c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02681c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03521c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12553" sboTerm="SBO:0000185" id="MAR12553" name="efflux of cyclosporine-sulphate into bile" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12553" sboTerm="SBO:0000185" id="R_MAR12553" name="efflux of cyclosporine-sulphate into bile" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -488753,7 +487741,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12553">
+            <rdf:Description rdf:about="#R_MAR12553">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CSASULPteb"/>
@@ -488764,18 +487752,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03521c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03521c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03521e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03521e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12554" sboTerm="SBO:0000185" id="MAR12554" name="efflux of cyclosporine-sulphate into hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12554" sboTerm="SBO:0000185" id="R_MAR12554" name="efflux of cyclosporine-sulphate into hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -488785,7 +487773,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12554">
+            <rdf:Description rdf:about="#R_MAR12554">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CSASULPtev"/>
@@ -488796,13 +487784,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03521c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03521c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03521e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03521e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12555" sboTerm="SBO:0000185" id="MAR12555" name="uptake of cyclosporine by the enterocytes" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12555" sboTerm="SBO:0000185" id="R_MAR12555" name="uptake of cyclosporine by the enterocytes" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -488811,7 +487799,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12555">
+            <rdf:Description rdf:about="#R_MAR12555">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CSAtd"/>
@@ -488822,13 +487810,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03520e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03520e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03520c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03520c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12556" sboTerm="SBO:0000185" id="MAR12556" name="efflux of cyclosporine by P-gp from the enterocytes into lumen" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12556" sboTerm="SBO:0000185" id="R_MAR12556" name="efflux of cyclosporine by P-gp from the enterocytes into lumen" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -488838,7 +487826,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12556">
+            <rdf:Description rdf:about="#R_MAR12556">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.6.3.44"/>
@@ -488850,21 +487838,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03520c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03520c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03520e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03520e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Mdr50"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12557" sboTerm="SBO:0000176" id="MAR12557" name="glucuronidation of cerivastatin-M1" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12557" sboTerm="SBO:0000176" id="R_MAR12557" name="glucuronidation of cerivastatin-M1" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -488873,7 +487861,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12557">
+            <rdf:Description rdf:about="#R_MAR12557">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.17"/>
@@ -488885,13 +487873,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03109r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03515r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03109r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03515r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03523r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03523r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -488907,7 +487895,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12558" sboTerm="SBO:0000176" id="MAR12558" name="glucuronidation of cerivastatin-M23" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12558" sboTerm="SBO:0000176" id="R_MAR12558" name="glucuronidation of cerivastatin-M23" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -488916,7 +487904,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12558">
+            <rdf:Description rdf:about="#R_MAR12558">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.17"/>
@@ -488928,13 +487916,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03109r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03517r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03109r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03517r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03524r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03524r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -488950,7 +487938,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12559" sboTerm="SBO:0000176" id="MAR12559" name="acetylation of cysteine-conjugate-acetaminophen in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12559" sboTerm="SBO:0000176" id="R_MAR12559" name="acetylation of cysteine-conjugate-acetaminophen in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -488959,7 +487947,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12559">
+            <rdf:Description rdf:about="#R_MAR12559">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CYSACMPAChc"/>
@@ -488970,16 +487958,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01261c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03526c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03526c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03759c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12560" sboTerm="SBO:0000185" id="MAR12560" name="efflux of cysteine-conjugate-acetaminophen into hepatic vein" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12560" sboTerm="SBO:0000185" id="R_MAR12560" name="efflux of cysteine-conjugate-acetaminophen into hepatic vein" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -488988,7 +487976,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12560">
+            <rdf:Description rdf:about="#R_MAR12560">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CYSAMPtev"/>
@@ -488999,18 +487987,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03526c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03526c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03526e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03526e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12561" sboTerm="SBO:0000176" id="MAR12561" name="de-lactonization of cerivastatin-M31 to cerivastatin-M23 in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12561" sboTerm="SBO:0000176" id="R_MAR12561" name="de-lactonization of cerivastatin-M31 to cerivastatin-M23 in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -489019,7 +488007,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12561">
+            <rdf:Description rdf:about="#R_MAR12561">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/DELACCRVSM23hc"/>
@@ -489030,17 +488018,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02871c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02871c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03519c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02877c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03517c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02877c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03517c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12562" sboTerm="SBO:0000176" id="MAR12562" name="formation of deoxy-fluvastatin-dinor" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12562" sboTerm="SBO:0000176" id="R_MAR12562" name="formation of deoxy-fluvastatin-dinor" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -489049,7 +488037,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12562">
+            <rdf:Description rdf:about="#R_MAR12562">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.3.6"/>
@@ -489064,17 +488052,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03579x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03579x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02041x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03546x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03546x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -489083,7 +488071,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12563" sboTerm="SBO:0000185" id="MAR12563" name="exit of deoxy-fluvastatin-dinor into hepatic vein for excretion in urine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12563" sboTerm="SBO:0000185" id="R_MAR12563" name="exit of deoxy-fluvastatin-dinor into hepatic vein for excretion in urine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -489092,7 +488080,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12563">
+            <rdf:Description rdf:about="#R_MAR12563">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/DEOXFVStev"/>
@@ -489103,13 +488091,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03546c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03546c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03546e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03546e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12564" sboTerm="SBO:0000176" id="MAR12564" name="oxidation of fluvastatin to N-desisopropyl-fluvastatin in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12564" sboTerm="SBO:0000176" id="R_MAR12564" name="oxidation of fluvastatin to N-desisopropyl-fluvastatin in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -489118,7 +488106,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12564">
+            <rdf:Description rdf:about="#R_MAR12564">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.13.-"/>
@@ -489130,23 +488118,23 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039r" stoichiometry="4" constant="true"/>
-          <speciesReference species="MAM02555r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02871r" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM03579r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM02555r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02871r" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM03579r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02041r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02877r" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM03547r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02877r" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM03547r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Cyp18a1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12565" sboTerm="SBO:0000185" id="MAR12565" name="efflux of N-desisopropyl-fluvastatin into bile for excretion into faeces" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12565" sboTerm="SBO:0000185" id="R_MAR12565" name="efflux of N-desisopropyl-fluvastatin into bile for excretion into faeces" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -489156,7 +488144,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12565">
+            <rdf:Description rdf:about="#R_MAR12565">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/DESFVSteb"/>
@@ -489167,18 +488155,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03547c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03547c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03547e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03547e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12566" sboTerm="SBO:0000185" id="MAR12566" name="excretion of dehydro-gliclazide into bile" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12566" sboTerm="SBO:0000185" id="R_MAR12566" name="excretion of dehydro-gliclazide into bile" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -489188,7 +488176,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12566">
+            <rdf:Description rdf:about="#R_MAR12566">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/DHGLZABCt"/>
@@ -489199,18 +488187,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03549c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03549c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03549e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03549e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12567" sboTerm="SBO:0000176" id="MAR12567" name="dehydrogenation of gliclazide to dehydro-gliclazide in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12567" sboTerm="SBO:0000176" id="R_MAR12567" name="dehydrogenation of gliclazide to dehydro-gliclazide in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -489219,7 +488207,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12567">
+            <rdf:Description rdf:about="#R_MAR12567">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/DHGLZhc"/>
@@ -489230,16 +488218,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03634c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03634c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03549c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03549c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12568" sboTerm="SBO:0000185" id="MAR12568" name="excretion of dehydro-gliclazide into hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12568" sboTerm="SBO:0000185" id="R_MAR12568" name="excretion of dehydro-gliclazide into hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -489248,7 +488236,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12568">
+            <rdf:Description rdf:about="#R_MAR12568">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/DHGLZtev"/>
@@ -489259,13 +488247,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03549c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03549c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03549e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03549e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12569" sboTerm="SBO:0000176" id="MAR12569" name="oxidation of pravastatin to desacyl pravastatin in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12569" sboTerm="SBO:0000176" id="R_MAR12569" name="oxidation of pravastatin to desacyl pravastatin in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -489274,7 +488262,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12569">
+            <rdf:Description rdf:about="#R_MAR12569">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.13.-"/>
@@ -489286,16 +488274,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039r" stoichiometry="6" constant="true"/>
-          <speciesReference species="MAM02555r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02871r" stoichiometry="5" constant="true"/>
-          <speciesReference species="MAM03916r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="6" constant="true"/>
+          <speciesReference species="M_MAM02555r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02871r" stoichiometry="5" constant="true"/>
+          <speciesReference species="M_MAM03916r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040r" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02554r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02877r" stoichiometry="5" constant="true"/>
-          <speciesReference species="MAM03566r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02554r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02877r" stoichiometry="5" constant="true"/>
+          <speciesReference species="M_MAM03566r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -489304,7 +488292,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12570" sboTerm="SBO:0000185" id="MAR12570" name="efflux of desacyl dehydro-pravastatin into bile" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12570" sboTerm="SBO:0000185" id="R_MAR12570" name="efflux of desacyl dehydro-pravastatin into bile" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -489313,7 +488301,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12570">
+            <rdf:Description rdf:about="#R_MAR12570">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/DSPVSteb"/>
@@ -489324,15 +488312,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03566c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03566c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03566e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03566e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -489342,7 +488330,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12571" sboTerm="SBO:0000185" id="MAR12571" name="exit of desacyl dehydro-pravastatin into hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12571" sboTerm="SBO:0000185" id="R_MAR12571" name="exit of desacyl dehydro-pravastatin into hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -489351,7 +488339,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12571">
+            <rdf:Description rdf:about="#R_MAR12571">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/DSPVStev"/>
@@ -489362,13 +488350,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03566c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03566c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03566e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03566e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12572" sboTerm="SBO:0000176" id="MAR12572" name="formation of epoxy derivative of tacrolimus in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12572" sboTerm="SBO:0000176" id="R_MAR12572" name="formation of epoxy derivative of tacrolimus in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -489377,7 +488365,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12572">
+            <rdf:Description rdf:about="#R_MAR12572">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EPOXTAChr"/>
@@ -489388,17 +488376,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039r" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM02630r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02871r" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM03959r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM02630r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02871r" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM03959r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02877r" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM03572r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02877r" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM03572r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12573" sboTerm="SBO:0000185" id="MAR12573" name="efflux of 31-O-Desmethyl,19-Hydroxy,37, 39-Epoxy-tacrolimus into bile" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12573" sboTerm="SBO:0000185" id="R_MAR12573" name="efflux of 31-O-Desmethyl,19-Hydroxy,37, 39-Epoxy-tacrolimus into bile" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -489407,7 +488395,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12573">
+            <rdf:Description rdf:about="#R_MAR12573">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EPOXTACteb"/>
@@ -489418,18 +488406,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03572c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03572c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03572e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03572e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12574" sboTerm="SBO:0000185" id="MAR12574" name="exit of 31-O-Desmethyl,19-Hydroxy,37, 39-Epoxy-tacrolimus into hepatic vein" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12574" sboTerm="SBO:0000185" id="R_MAR12574" name="exit of 31-O-Desmethyl,19-Hydroxy,37, 39-Epoxy-tacrolimus into hepatic vein" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -489438,7 +488426,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12574">
+            <rdf:Description rdf:about="#R_MAR12574">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EPOXTACtev"/>
@@ -489449,13 +488437,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03572c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03572c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03572e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03572e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12575" sboTerm="SBO:0000627" id="MAR12575" name="exchange reaction for 12-hydroxy tacrolimus in intestinal lumen" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12575" sboTerm="SBO:0000627" id="R_MAR12575" name="exchange reaction for 12-hydroxy tacrolimus in intestinal lumen" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -489463,7 +488451,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12575">
+            <rdf:Description rdf:about="#R_MAR12575">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_12htacr_e"/>
@@ -489474,10 +488462,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01817e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01817e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12576" sboTerm="SBO:0000627" id="MAR12576" name="exchange reaction for 13,31-O-Didesmethyl-tacrolimus in hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12576" sboTerm="SBO:0000627" id="R_MAR12576" name="exchange reaction for 13,31-O-Didesmethyl-tacrolimus in hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -489485,7 +488473,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12576">
+            <rdf:Description rdf:about="#R_MAR12576">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_1331tacr_e"/>
@@ -489496,10 +488484,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01818e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01818e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12577" sboTerm="SBO:0000627" id="MAR12577" name="exchange reaction for 13-O-desmethyl tacrolimus in intestinal lumen" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12577" sboTerm="SBO:0000627" id="R_MAR12577" name="exchange reaction for 13-O-desmethyl tacrolimus in intestinal lumen" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -489507,7 +488495,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12577">
+            <rdf:Description rdf:about="#R_MAR12577">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_13dmt_e"/>
@@ -489518,10 +488506,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01875e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01875e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12578" sboTerm="SBO:0000627" id="MAR12578" name="exchange reaction for 1,4-Dihydroxy-midazolam in hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12578" sboTerm="SBO:0000627" id="R_MAR12578" name="exchange reaction for 1,4-Dihydroxy-midazolam in hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -489529,7 +488517,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12578">
+            <rdf:Description rdf:about="#R_MAR12578">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_14hmdz_e"/>
@@ -489540,10 +488528,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01888e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01888e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12579" sboTerm="SBO:0000627" id="MAR12579" name="exchange reaction for 13,15-O-didesmethyl tacrolimus in intestinal lumen" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12579" sboTerm="SBO:0000627" id="R_MAR12579" name="exchange reaction for 13,15-O-didesmethyl tacrolimus in intestinal lumen" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -489551,7 +488539,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12579">
+            <rdf:Description rdf:about="#R_MAR12579">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_1513tacr_e"/>
@@ -489562,10 +488550,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01889e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01889e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12580" sboTerm="SBO:0000627" id="MAR12580" name="exchange reaction for 15, 31-O-Didesmethyl-tacrolimus in hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12580" sboTerm="SBO:0000627" id="R_MAR12580" name="exchange reaction for 15, 31-O-Didesmethyl-tacrolimus in hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -489573,7 +488561,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12580">
+            <rdf:Description rdf:about="#R_MAR12580">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_1531tacr_e"/>
@@ -489584,10 +488572,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01890e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01890e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12581" sboTerm="SBO:0000627" id="MAR12581" name="exchange reaction for 15-O-desmethyl tacrolimus in intestinal lumen" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12581" sboTerm="SBO:0000627" id="R_MAR12581" name="exchange reaction for 15-O-desmethyl tacrolimus in intestinal lumen" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -489595,7 +488583,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12581">
+            <rdf:Description rdf:about="#R_MAR12581">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_15dmt_e"/>
@@ -489606,10 +488594,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01891e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01891e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12582" sboTerm="SBO:0000627" id="MAR12582" name="exchange reaction for 1-hydroxy-ibuprofen in hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12582" sboTerm="SBO:0000627" id="R_MAR12582" name="exchange reaction for 1-hydroxy-ibuprofen in hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -489617,7 +488605,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12582">
+            <rdf:Description rdf:about="#R_MAR12582">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_1hibup__S_e"/>
@@ -489628,10 +488616,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01894e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01894e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12583" sboTerm="SBO:0000627" id="MAR12583" name="exchange reaction for 1-hydroxy S-ibuprofen-glucuronide in hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12583" sboTerm="SBO:0000627" id="R_MAR12583" name="exchange reaction for 1-hydroxy S-ibuprofen-glucuronide in hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -489639,7 +488627,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12583">
+            <rdf:Description rdf:about="#R_MAR12583">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_1hibupglu__S_e"/>
@@ -489650,10 +488638,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01901e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01901e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12584" sboTerm="SBO:0000627" id="MAR12584" name="exchange reaction for 1-OH-midazolam-glucuronide in portal blood" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12584" sboTerm="SBO:0000627" id="R_MAR12584" name="exchange reaction for 1-OH-midazolam-glucuronide in portal blood" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -489661,7 +488649,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12584">
+            <rdf:Description rdf:about="#R_MAR12584">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_1hmdgluc_e"/>
@@ -489672,10 +488660,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01902e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01902e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12585" sboTerm="SBO:0000627" id="MAR12585" name="exchange reaction for 1-OH-midazolam in portal blood" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12585" sboTerm="SBO:0000627" id="R_MAR12585" name="exchange reaction for 1-OH-midazolam in portal blood" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -489683,7 +488671,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12585">
+            <rdf:Description rdf:about="#R_MAR12585">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_1ohmdz_e"/>
@@ -489694,10 +488682,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01903e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01903e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12586" sboTerm="SBO:0000627" id="MAR12586" name="exchange reaction for 2-hydroxy-atorvastatin-acid in portal blood" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12586" sboTerm="SBO:0000627" id="R_MAR12586" name="exchange reaction for 2-hydroxy-atorvastatin-acid in portal blood" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -489705,7 +488693,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12586">
+            <rdf:Description rdf:about="#R_MAR12586">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_2hatvacid_e"/>
@@ -489716,10 +488704,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03177e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03177e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12587" sboTerm="SBO:0000627" id="MAR12587" name="exchange reaction for 2-hydroxy-atorvastatin-acyl-glucuronide in bile" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12587" sboTerm="SBO:0000627" id="R_MAR12587" name="exchange reaction for 2-hydroxy-atorvastatin-acyl-glucuronide in bile" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -489727,7 +488715,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12587">
+            <rdf:Description rdf:about="#R_MAR12587">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_2hatvacidgluc_e"/>
@@ -489738,10 +488726,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03178e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03178e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12588" sboTerm="SBO:0000627" id="MAR12588" name="exchange reaction for 2-hydroxy-atorvastatin-lactone in portal blood" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12588" sboTerm="SBO:0000627" id="R_MAR12588" name="exchange reaction for 2-hydroxy-atorvastatin-lactone in portal blood" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -489749,7 +488737,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12588">
+            <rdf:Description rdf:about="#R_MAR12588">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_2hatvlac_e"/>
@@ -489760,10 +488748,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03179e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03179e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12589" sboTerm="SBO:0000627" id="MAR12589" name="exchange reaction for 2-hydroxy-atorvastatin-lactone-glucuronide in bile" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12589" sboTerm="SBO:0000627" id="R_MAR12589" name="exchange reaction for 2-hydroxy-atorvastatin-lactone-glucuronide in bile" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -489771,7 +488759,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12589">
+            <rdf:Description rdf:about="#R_MAR12589">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_2hatvlacgluc_e"/>
@@ -489782,10 +488770,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03180e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03180e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12590" sboTerm="SBO:0000627" id="MAR12590" name="exchange reaction for R-2-hydroxy-ibuprofen in hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12590" sboTerm="SBO:0000627" id="R_MAR12590" name="exchange reaction for R-2-hydroxy-ibuprofen in hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -489793,7 +488781,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12590">
+            <rdf:Description rdf:about="#R_MAR12590">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_2hibup__R_e"/>
@@ -489804,10 +488792,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03183e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03183e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12591" sboTerm="SBO:0000627" id="MAR12591" name="exchange reaction for S-2-hydroxy-ibuprofen in hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12591" sboTerm="SBO:0000627" id="R_MAR12591" name="exchange reaction for S-2-hydroxy-ibuprofen in hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -489815,7 +488803,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12591">
+            <rdf:Description rdf:about="#R_MAR12591">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_2hibup__S_e"/>
@@ -489826,10 +488814,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03184e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03184e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12592" sboTerm="SBO:0000627" id="MAR12592" name="exchange reaction for 2-hydroxy S-ibuprofen-glucuronide in hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12592" sboTerm="SBO:0000627" id="R_MAR12592" name="exchange reaction for 2-hydroxy S-ibuprofen-glucuronide in hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -489837,7 +488825,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12592">
+            <rdf:Description rdf:about="#R_MAR12592">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_2hibupglu__S_e"/>
@@ -489848,10 +488836,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03185e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03185e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12593" sboTerm="SBO:0000627" id="MAR12593" name="exchange reaction for 31-O-desmethyl tacrolimus in intestinal lumen" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12593" sboTerm="SBO:0000627" id="R_MAR12593" name="exchange reaction for 31-O-desmethyl tacrolimus in intestinal lumen" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -489859,7 +488847,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12593">
+            <rdf:Description rdf:about="#R_MAR12593">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_31dmt_e"/>
@@ -489870,10 +488858,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03196e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03196e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12594" sboTerm="SBO:0000627" id="MAR12594" name="exchange reaction for 3-alpha-5-beta-dihydroxy pravastatin in portal blood" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12594" sboTerm="SBO:0000627" id="R_MAR12594" name="exchange reaction for 3-alpha-5-beta-dihydroxy pravastatin in portal blood" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -489881,7 +488869,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12594">
+            <rdf:Description rdf:about="#R_MAR12594">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_35dhpvs_e"/>
@@ -489892,10 +488880,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03198e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03198e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12595" sboTerm="SBO:0000627" id="MAR12595" name="exchange reaction for 3,5-dihydrodiol-simvastatin-lactone form in bile" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12595" sboTerm="SBO:0000627" id="R_MAR12595" name="exchange reaction for 3,5-dihydrodiol-simvastatin-lactone form in bile" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -489903,7 +488891,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12595">
+            <rdf:Description rdf:about="#R_MAR12595">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_35dsmv_e"/>
@@ -489914,10 +488902,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03199e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03199e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12596" sboTerm="SBO:0000627" id="MAR12596" name="exchange reaction for R-3-hydroxy-ibuprofen in hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12596" sboTerm="SBO:0000627" id="R_MAR12596" name="exchange reaction for R-3-hydroxy-ibuprofen in hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -489925,7 +488913,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12596">
+            <rdf:Description rdf:about="#R_MAR12596">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_3hibup__R_e"/>
@@ -489936,10 +488924,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03223e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03223e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12597" sboTerm="SBO:0000627" id="MAR12597" name="exchange reaction for S-3-hydroxy-ibuprofen in hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12597" sboTerm="SBO:0000627" id="R_MAR12597" name="exchange reaction for S-3-hydroxy-ibuprofen in hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -489947,7 +488935,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12597">
+            <rdf:Description rdf:about="#R_MAR12597">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_3hibup__S_e"/>
@@ -489958,10 +488946,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03224e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03224e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12598" sboTerm="SBO:0000627" id="MAR12598" name="exchange reaction for 3-hydroxy S-ibuprofen-glucuronide in hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12598" sboTerm="SBO:0000627" id="R_MAR12598" name="exchange reaction for 3-hydroxy S-ibuprofen-glucuronide in hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -489969,7 +488957,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12598">
+            <rdf:Description rdf:about="#R_MAR12598">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_3hibupglu__S_e"/>
@@ -489980,10 +488968,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03225e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03225e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12599" sboTerm="SBO:0000627" id="MAR12599" name="exchange reaction for 3-hydroxy-lovastatin acid form in bile" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12599" sboTerm="SBO:0000627" id="R_MAR12599" name="exchange reaction for 3-hydroxy-lovastatin acid form in bile" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -489991,7 +488979,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12599">
+            <rdf:Description rdf:about="#R_MAR12599">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_3hlvstacid_e"/>
@@ -490002,10 +488990,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03229e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03229e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12600" sboTerm="SBO:0000627" id="MAR12600" name="exchange reaction for 3-hydroxy pravastatin in portal blood" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12600" sboTerm="SBO:0000627" id="R_MAR12600" name="exchange reaction for 3-hydroxy pravastatin in portal blood" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -490013,7 +489001,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12600">
+            <rdf:Description rdf:about="#R_MAR12600">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_3hpvs_e"/>
@@ -490024,10 +489012,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03235e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03235e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12601" sboTerm="SBO:0000627" id="MAR12601" name="exchange reaction of 3-S-hydroxy-pravastatin-tetranor in hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12601" sboTerm="SBO:0000627" id="R_MAR12601" name="exchange reaction of 3-S-hydroxy-pravastatin-tetranor in hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -490035,7 +489023,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12601">
+            <rdf:Description rdf:about="#R_MAR12601">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_3hpvstet_e"/>
@@ -490046,10 +489034,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03237e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03237e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12602" sboTerm="SBO:0000627" id="MAR12602" name="exchange reaction for 3-hydroxy-simvastatin-acid form form in bile" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12602" sboTerm="SBO:0000627" id="R_MAR12602" name="exchange reaction for 3-hydroxy-simvastatin-acid form form in bile" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -490057,7 +489045,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12602">
+            <rdf:Description rdf:about="#R_MAR12602">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_3hsmvacid_e"/>
@@ -490068,10 +489056,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03240e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03240e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12603" sboTerm="SBO:0000627" id="MAR12603" name="exchange reaction for 3-alpha-iso-pravastatin in portal blood" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12603" sboTerm="SBO:0000627" id="R_MAR12603" name="exchange reaction for 3-alpha-iso-pravastatin in portal blood" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -490079,7 +489067,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12603">
+            <rdf:Description rdf:about="#R_MAR12603">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_3ispvs_e"/>
@@ -490090,10 +489078,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03241e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03241e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12604" sboTerm="SBO:0000627" id="MAR12604" name="exchange reaction for 3-OH-acetaminophen in hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12604" sboTerm="SBO:0000627" id="R_MAR12604" name="exchange reaction for 3-OH-acetaminophen in hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -490101,7 +489089,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12604">
+            <rdf:Description rdf:about="#R_MAR12604">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_3ohacmp_e"/>
@@ -490112,10 +489100,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03256e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03256e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12605" sboTerm="SBO:0000627" id="MAR12605" name="exchange reaction for 4-beta-OH-gliclazide in hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12605" sboTerm="SBO:0000627" id="R_MAR12605" name="exchange reaction for 4-beta-OH-gliclazide in hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -490123,7 +489111,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12605">
+            <rdf:Description rdf:about="#R_MAR12605">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_4bhglz_e"/>
@@ -490134,10 +489122,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03269e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03269e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12606" sboTerm="SBO:0000627" id="MAR12606" name="exchange reaction for 4-hydroxy-atorvastatin-acid in portal blood" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12606" sboTerm="SBO:0000627" id="R_MAR12606" name="exchange reaction for 4-hydroxy-atorvastatin-acid in portal blood" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -490145,7 +489133,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12606">
+            <rdf:Description rdf:about="#R_MAR12606">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_4hatvacid_e"/>
@@ -490156,10 +489144,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03271e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03271e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12607" sboTerm="SBO:0000627" id="MAR12607" name="exchange reaction for 4-hydroxy-atorvastatin-lactone in portal blood" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12607" sboTerm="SBO:0000627" id="R_MAR12607" name="exchange reaction for 4-hydroxy-atorvastatin-lactone in portal blood" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -490167,7 +489155,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12607">
+            <rdf:Description rdf:about="#R_MAR12607">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_4hatvlac_e"/>
@@ -490178,10 +489166,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03272e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03272e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12608" sboTerm="SBO:0000627" id="MAR12608" name="exchange reaction for 4-OH-midazolam-glucuronide in hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12608" sboTerm="SBO:0000627" id="R_MAR12608" name="exchange reaction for 4-OH-midazolam-glucuronide in hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -490189,7 +489177,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12608">
+            <rdf:Description rdf:about="#R_MAR12608">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_4hmdgluc_e"/>
@@ -490200,10 +489188,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03275e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03275e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12609" sboTerm="SBO:0000627" id="MAR12609" name="exchange reaction for 4-OH-midazolam in hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12609" sboTerm="SBO:0000627" id="R_MAR12609" name="exchange reaction for 4-OH-midazolam in hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -490211,7 +489199,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12609">
+            <rdf:Description rdf:about="#R_MAR12609">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_4ohmdz_e"/>
@@ -490222,10 +489210,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03278e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03278e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12610" sboTerm="SBO:0000627" id="MAR12610" name="exchange reaction of 3-keto-5,6,-dihydroxy-pravastatin in hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12610" sboTerm="SBO:0000627" id="R_MAR12610" name="exchange reaction of 3-keto-5,6,-dihydroxy-pravastatin in hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -490233,7 +489221,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12610">
+            <rdf:Description rdf:about="#R_MAR12610">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_56dhpvs_e"/>
@@ -490244,10 +489232,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03279e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03279e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12611" sboTerm="SBO:0000627" id="MAR12611" name="exchange reaction of 5,6-epoxy-3-alpha-iso-pravastatin in hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12611" sboTerm="SBO:0000627" id="R_MAR12611" name="exchange reaction of 5,6-epoxy-3-alpha-iso-pravastatin in hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -490255,7 +489243,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12611">
+            <rdf:Description rdf:about="#R_MAR12611">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_56eppvs_e"/>
@@ -490266,10 +489254,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03280e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03280e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12612" sboTerm="SBO:0000627" id="MAR12612" name="exchnage reaction for 5-hydroxy-fluvastatin in bile" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12612" sboTerm="SBO:0000627" id="R_MAR12612" name="exchnage reaction for 5-hydroxy-fluvastatin in bile" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -490277,7 +489265,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12612">
+            <rdf:Description rdf:about="#R_MAR12612">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_5ohfvs_e"/>
@@ -490288,10 +489276,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03285e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03285e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12613" sboTerm="SBO:0000627" id="MAR12613" name="exchnage reaction for 5-hydroxy-fluvastatin-glucuronide in hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12613" sboTerm="SBO:0000627" id="R_MAR12613" name="exchnage reaction for 5-hydroxy-fluvastatin-glucuronide in hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -490299,7 +489287,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12613">
+            <rdf:Description rdf:about="#R_MAR12613">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_5ohfvsglu_e"/>
@@ -490310,10 +489298,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03286e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03286e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12614" sboTerm="SBO:0000627" id="MAR12614" name="exchange reaction for 6-alpha-OH-gliclazide in hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12614" sboTerm="SBO:0000627" id="R_MAR12614" name="exchange reaction for 6-alpha-OH-gliclazide in hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -490321,7 +489309,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12614">
+            <rdf:Description rdf:about="#R_MAR12614">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_6ahglz_e"/>
@@ -490332,10 +489320,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03289e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03289e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12615" sboTerm="SBO:0000627" id="MAR12615" name="exchange reaction for 6-beta-OH-gliclazide in hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12615" sboTerm="SBO:0000627" id="R_MAR12615" name="exchange reaction for 6-beta-OH-gliclazide in hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -490343,7 +489331,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12615">
+            <rdf:Description rdf:about="#R_MAR12615">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_6bhglz_e"/>
@@ -490354,10 +489342,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03290e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03290e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12616" sboTerm="SBO:0000627" id="MAR12616" name="exchange reaction for 6-beta-OH-gliclazide-glucuronide in hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12616" sboTerm="SBO:0000627" id="R_MAR12616" name="exchange reaction for 6-beta-OH-gliclazide-glucuronide in hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -490365,7 +489353,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12616">
+            <rdf:Description rdf:about="#R_MAR12616">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_6bhglzglc_e"/>
@@ -490376,10 +489364,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03291e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03291e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12617" sboTerm="SBO:0000627" id="MAR12617" name="exchange reaction for 6-beta-carboxy-simvastatin-acid form in bile" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12617" sboTerm="SBO:0000627" id="R_MAR12617" name="exchange reaction for 6-beta-carboxy-simvastatin-acid form in bile" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -490387,7 +489375,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12617">
+            <rdf:Description rdf:about="#R_MAR12617">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_6csmvacid_e"/>
@@ -490398,10 +489386,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03293e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03293e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12618" sboTerm="SBO:0000627" id="MAR12618" name="exchange reaction for 6-epi-pravastatin in portal blood" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12618" sboTerm="SBO:0000627" id="R_MAR12618" name="exchange reaction for 6-epi-pravastatin in portal blood" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -490409,7 +489397,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12618">
+            <rdf:Description rdf:about="#R_MAR12618">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_6epvs_e"/>
@@ -490420,10 +489408,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03294e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03294e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12619" sboTerm="SBO:0000627" id="MAR12619" name="exchange reaction for 6-beta-hydroxy-lovastatin in portal blood" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12619" sboTerm="SBO:0000627" id="R_MAR12619" name="exchange reaction for 6-beta-hydroxy-lovastatin in portal blood" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -490431,7 +489419,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12619">
+            <rdf:Description rdf:about="#R_MAR12619">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_6hlvst_e"/>
@@ -490442,10 +489430,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03296e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03296e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12620" sboTerm="SBO:0000627" id="MAR12620" name="exchange reaction for6-beta-hydroxy-methyl-simvastatin-acid form in bile" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12620" sboTerm="SBO:0000627" id="R_MAR12620" name="exchange reaction for6-beta-hydroxy-methyl-simvastatin-acid form in bile" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -490453,7 +489441,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12620">
+            <rdf:Description rdf:about="#R_MAR12620">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_6hmsmvacid_e"/>
@@ -490464,10 +489452,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03299e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03299e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12621" sboTerm="SBO:0000627" id="MAR12621" name="exchange reaction for 6-beta-hydroxy simvastatin acid in bile" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12621" sboTerm="SBO:0000627" id="R_MAR12621" name="exchange reaction for 6-beta-hydroxy simvastatin acid in bile" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -490475,7 +489463,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12621">
+            <rdf:Description rdf:about="#R_MAR12621">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_6hsmvacid_e"/>
@@ -490486,10 +489474,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03301e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03301e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12622" sboTerm="SBO:0000627" id="MAR12622" name="exchange reaction for 6-exomethylene-lovastatin-acid form in bile" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12622" sboTerm="SBO:0000627" id="R_MAR12622" name="exchange reaction for 6-exomethylene-lovastatin-acid form in bile" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -490497,7 +489485,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12622">
+            <rdf:Description rdf:about="#R_MAR12622">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_6melvacid_e"/>
@@ -490508,10 +489496,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03302e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03302e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12623" sboTerm="SBO:0000627" id="MAR12623" name="exchange reaction for 6-exomethylene-lovastatin in portal blood" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12623" sboTerm="SBO:0000627" id="R_MAR12623" name="exchange reaction for 6-exomethylene-lovastatin in portal blood" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -490519,7 +489507,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12623">
+            <rdf:Description rdf:about="#R_MAR12623">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_6melvst_e"/>
@@ -490530,10 +489518,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03303e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03303e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12624" sboTerm="SBO:0000627" id="MAR12624" name="exchnage reaction for 6-hydroxy-fluvastatin in bile" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12624" sboTerm="SBO:0000627" id="R_MAR12624" name="exchnage reaction for 6-hydroxy-fluvastatin in bile" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -490541,7 +489529,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12624">
+            <rdf:Description rdf:about="#R_MAR12624">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_6ohfvs_e"/>
@@ -490552,10 +489540,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03305e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03305e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12625" sboTerm="SBO:0000627" id="MAR12625" name="exchange reaction for 6-hydroxy-fluvastatin-glucuronide in hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12625" sboTerm="SBO:0000627" id="R_MAR12625" name="exchange reaction for 6-hydroxy-fluvastatin-glucuronide in hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -490563,7 +489551,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12625">
+            <rdf:Description rdf:about="#R_MAR12625">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_6ohfvsglu_e"/>
@@ -490574,10 +489562,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03306e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03306e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12626" sboTerm="SBO:0000627" id="MAR12626" name="exchange reaction for 7-alpha-OH-gliclazide in hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12626" sboTerm="SBO:0000627" id="R_MAR12626" name="exchange reaction for 7-alpha-OH-gliclazide in hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -490585,7 +489573,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12626">
+            <rdf:Description rdf:about="#R_MAR12626">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_7ahglz_e"/>
@@ -490596,10 +489584,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03307e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03307e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12627" sboTerm="SBO:0000627" id="MAR12627" name="exchange reaction for 7-beta-OH-gliclazide in hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12627" sboTerm="SBO:0000627" id="R_MAR12627" name="exchange reaction for 7-beta-OH-gliclazide in hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -490607,7 +489595,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12627">
+            <rdf:Description rdf:about="#R_MAR12627">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_7bhglz_e"/>
@@ -490618,10 +489606,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03308e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03308e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12628" sboTerm="SBO:0000627" id="MAR12628" name="exchange reaction for 7-beta-OH-gliclazide-glucuronide in hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12628" sboTerm="SBO:0000627" id="R_MAR12628" name="exchange reaction for 7-beta-OH-gliclazide-glucuronide in hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -490629,7 +489617,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12628">
+            <rdf:Description rdf:about="#R_MAR12628">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_7bhglzglc_e"/>
@@ -490640,10 +489628,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03309e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03309e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12629" sboTerm="SBO:0000627" id="MAR12629" name="exchange reaction of 7-hydroxy-3-alpha-iso-pravastatin in hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12629" sboTerm="SBO:0000627" id="R_MAR12629" name="exchange reaction of 7-hydroxy-3-alpha-iso-pravastatin in hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -490651,7 +489639,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12629">
+            <rdf:Description rdf:about="#R_MAR12629">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_7hpvs_e"/>
@@ -490662,10 +489650,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03312e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03312e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12630" sboTerm="SBO:0000627" id="MAR12630" name="exchange reaction for acetaminophen in small intestinal lumen" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12630" sboTerm="SBO:0000627" id="R_MAR12630" name="exchange reaction for acetaminophen in small intestinal lumen" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -490673,7 +489661,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12630">
+            <rdf:Description rdf:about="#R_MAR12630">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_acmp_e"/>
@@ -490684,10 +489672,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03402e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03402e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12631" sboTerm="SBO:0000627" id="MAR12631" name="exchange reaction for acetaminophen-glucuronide-conjugate in portal blood" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12631" sboTerm="SBO:0000627" id="R_MAR12631" name="exchange reaction for acetaminophen-glucuronide-conjugate in portal blood" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -490695,7 +489683,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12631">
+            <rdf:Description rdf:about="#R_MAR12631">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_acmpglu_e"/>
@@ -490706,10 +489694,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03403e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03403e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12632" sboTerm="SBO:0000627" id="MAR12632" name="exchange reaction for acetaminophen-glutathione-conjugate in intestinal lumen" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12632" sboTerm="SBO:0000627" id="R_MAR12632" name="exchange reaction for acetaminophen-glutathione-conjugate in intestinal lumen" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -490717,7 +489705,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12632">
+            <rdf:Description rdf:about="#R_MAR12632">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_acmpglut_e"/>
@@ -490728,10 +489716,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03404e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03404e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12633" sboTerm="SBO:0000627" id="MAR12633" name="exchange reaction for allopurinol in intestinal lumen" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12633" sboTerm="SBO:0000627" id="R_MAR12633" name="exchange reaction for allopurinol in intestinal lumen" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -490739,7 +489727,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12633">
+            <rdf:Description rdf:about="#R_MAR12633">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_allop_e"/>
@@ -490750,10 +489738,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03418e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03418e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12634" sboTerm="SBO:0000627" id="MAR12634" name="exchange reaction for AM19-cyclosporine in hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12634" sboTerm="SBO:0000627" id="R_MAR12634" name="exchange reaction for AM19-cyclosporine in hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -490761,7 +489749,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12634">
+            <rdf:Description rdf:about="#R_MAR12634">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_am19cs_e"/>
@@ -490772,10 +489760,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03420e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03420e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12635" sboTerm="SBO:0000627" id="MAR12635" name="exchange reaction for AM1A4N-cyclosporine in bile" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12635" sboTerm="SBO:0000627" id="R_MAR12635" name="exchange reaction for AM1A4N-cyclosporine in bile" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -490783,7 +489771,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12635">
+            <rdf:Description rdf:about="#R_MAR12635">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_am1a4ncs_e"/>
@@ -490794,10 +489782,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03421e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03421e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12636" sboTerm="SBO:0000627" id="MAR12636" name="exchange reaction for AM1Ac-cyclosporine in hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12636" sboTerm="SBO:0000627" id="R_MAR12636" name="exchange reaction for AM1Ac-cyclosporine in hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -490805,7 +489793,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12636">
+            <rdf:Description rdf:about="#R_MAR12636">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_am1accs_e"/>
@@ -490816,10 +489804,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03422e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03422e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12637" sboTerm="SBO:0000627" id="MAR12637" name="exchange reaction for AM1A (cyclosporine) in portal blood" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12637" sboTerm="SBO:0000627" id="R_MAR12637" name="exchange reaction for AM1A (cyclosporine) in portal blood" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -490827,7 +489815,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12637">
+            <rdf:Description rdf:about="#R_MAR12637">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_am1acs_e"/>
@@ -490838,10 +489826,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03423e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03423e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12638" sboTerm="SBO:0000627" id="MAR12638" name="exchange reaction for AM1AL (cyclosporine) in portal blood" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12638" sboTerm="SBO:0000627" id="R_MAR12638" name="exchange reaction for AM1AL (cyclosporine) in portal blood" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -490849,7 +489837,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12638">
+            <rdf:Description rdf:about="#R_MAR12638">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_am1alcs_e"/>
@@ -490860,10 +489848,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03424e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03424e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12639" sboTerm="SBO:0000627" id="MAR12639" name="exchange reaction for AM1c4N9-cyclosporine in bile" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12639" sboTerm="SBO:0000627" id="R_MAR12639" name="exchange reaction for AM1c4N9-cyclosporine in bile" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -490871,7 +489859,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12639">
+            <rdf:Description rdf:about="#R_MAR12639">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_am1c4n9cs_e"/>
@@ -490882,10 +489870,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03425e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03425e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12640" sboTerm="SBO:0000627" id="MAR12640" name="exchange reaction for AM1c9-cyclosporine in hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12640" sboTerm="SBO:0000627" id="R_MAR12640" name="exchange reaction for AM1c9-cyclosporine in hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -490893,7 +489881,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12640">
+            <rdf:Description rdf:about="#R_MAR12640">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_am1c9cs_e"/>
@@ -490904,10 +489892,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03426e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03426e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12641" sboTerm="SBO:0000627" id="MAR12641" name="exchange reaction for AM1c-cyclosporine in hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12641" sboTerm="SBO:0000627" id="R_MAR12641" name="exchange reaction for AM1c-cyclosporine in hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -490915,7 +489903,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12641">
+            <rdf:Description rdf:about="#R_MAR12641">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_am1ccs_e"/>
@@ -490926,10 +489914,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03427e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03427e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12642" sboTerm="SBO:0000627" id="MAR12642" name="exchange reaction for AM1c-glucuronide in bile" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12642" sboTerm="SBO:0000627" id="R_MAR12642" name="exchange reaction for AM1c-glucuronide in bile" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -490937,7 +489925,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12642">
+            <rdf:Description rdf:about="#R_MAR12642">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_am1cglc_e"/>
@@ -490948,10 +489936,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03428e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03428e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12643" sboTerm="SBO:0000627" id="MAR12643" name="exchange reaction for AM1 (cyclosporine) in portal blood" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12643" sboTerm="SBO:0000627" id="R_MAR12643" name="exchange reaction for AM1 (cyclosporine) in portal blood" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -490959,7 +489947,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12643">
+            <rdf:Description rdf:about="#R_MAR12643">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_am1csa_e"/>
@@ -490970,10 +489958,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03429e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03429e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12644" sboTerm="SBO:0000627" id="MAR12644" name="exchange reaction for AM4N9-cyclosporine in hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12644" sboTerm="SBO:0000627" id="R_MAR12644" name="exchange reaction for AM4N9-cyclosporine in hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -490981,7 +489969,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12644">
+            <rdf:Description rdf:about="#R_MAR12644">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_am4n9cs_e"/>
@@ -490992,10 +489980,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03430e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03430e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12645" sboTerm="SBO:0000627" id="MAR12645" name="exchange reaction for AM4N (cyclosporine) in portal blood" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12645" sboTerm="SBO:0000627" id="R_MAR12645" name="exchange reaction for AM4N (cyclosporine) in portal blood" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -491003,7 +489991,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12645">
+            <rdf:Description rdf:about="#R_MAR12645">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_am4ncs_e"/>
@@ -491014,10 +490002,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03431e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03431e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12646" sboTerm="SBO:0000627" id="MAR12646" name="exchange reaction for AM9 (cyclosporine) in portal blood" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12646" sboTerm="SBO:0000627" id="R_MAR12646" name="exchange reaction for AM9 (cyclosporine) in portal blood" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -491025,7 +490013,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12646">
+            <rdf:Description rdf:about="#R_MAR12646">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_am9csa_e"/>
@@ -491036,10 +490024,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03432e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03432e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12647" sboTerm="SBO:0000627" id="MAR12647" name="exchange reaction for atorvastatin in intestinal lumen" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12647" sboTerm="SBO:0000627" id="R_MAR12647" name="exchange reaction for atorvastatin in intestinal lumen" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -491047,7 +490035,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12647">
+            <rdf:Description rdf:about="#R_MAR12647">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_atvacid_e"/>
@@ -491058,10 +490046,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03476e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03476e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12648" sboTerm="SBO:0000627" id="MAR12648" name="exchange reaction for atorvastatin-lactone in portal blood" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12648" sboTerm="SBO:0000627" id="R_MAR12648" name="exchange reaction for atorvastatin-lactone in portal blood" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -491069,7 +490057,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12648">
+            <rdf:Description rdf:about="#R_MAR12648">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_atvlac_e"/>
@@ -491080,10 +490068,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03479e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03479e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12649" sboTerm="SBO:0000627" id="MAR12649" name="exchange reaction for R-carboxy ibuprofen in hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12649" sboTerm="SBO:0000627" id="R_MAR12649" name="exchange reaction for R-carboxy ibuprofen in hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -491091,7 +490079,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12649">
+            <rdf:Description rdf:about="#R_MAR12649">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_caribup__R_e"/>
@@ -491102,10 +490090,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03505e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03505e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12650" sboTerm="SBO:0000627" id="MAR12650" name="exchange reaction for S-carboxy ibuprofen in hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12650" sboTerm="SBO:0000627" id="R_MAR12650" name="exchange reaction for S-carboxy ibuprofen in hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -491113,7 +490101,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12650">
+            <rdf:Description rdf:about="#R_MAR12650">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_caribup_s_e"/>
@@ -491124,10 +490112,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03506e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03506e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12651" sboTerm="SBO:0000627" id="MAR12651" name="exchange reaction for S-carboxy ibuprofen glucuronide in hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12651" sboTerm="SBO:0000627" id="R_MAR12651" name="exchange reaction for S-carboxy ibuprofen glucuronide in hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -491135,7 +490123,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12651">
+            <rdf:Description rdf:about="#R_MAR12651">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_caribupglu__S_e"/>
@@ -491146,10 +490134,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03507e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03507e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12652" sboTerm="SBO:0000627" id="MAR12652" name="exchange reaction for carboxy-gliclazide in hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12652" sboTerm="SBO:0000627" id="R_MAR12652" name="exchange reaction for carboxy-gliclazide in hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -491157,7 +490145,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12652">
+            <rdf:Description rdf:about="#R_MAR12652">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_crglz_e"/>
@@ -491168,10 +490156,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03513e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03513e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12653" sboTerm="SBO:0000627" id="MAR12653" name="exchange reaction for cerivastatin in intestinal lumen" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12653" sboTerm="SBO:0000627" id="R_MAR12653" name="exchange reaction for cerivastatin in intestinal lumen" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -491179,7 +490167,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12653">
+            <rdf:Description rdf:about="#R_MAR12653">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_crvs_e"/>
@@ -491190,10 +490178,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03514e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03514e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12654" sboTerm="SBO:0000627" id="MAR12654" name="exchange reaction for cerivastatin-M1 in hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12654" sboTerm="SBO:0000627" id="R_MAR12654" name="exchange reaction for cerivastatin-M1 in hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -491201,7 +490189,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12654">
+            <rdf:Description rdf:about="#R_MAR12654">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_crvsm1_e"/>
@@ -491212,10 +490200,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03515e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03515e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12655" sboTerm="SBO:0000627" id="MAR12655" name="exchange reaction for cerivastatin-M23 in hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12655" sboTerm="SBO:0000627" id="R_MAR12655" name="exchange reaction for cerivastatin-M23 in hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -491223,7 +490211,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12655">
+            <rdf:Description rdf:about="#R_MAR12655">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_crvsm23_e"/>
@@ -491234,10 +490222,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03517e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03517e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12656" sboTerm="SBO:0000627" id="MAR12656" name="exchange reaction for cerivastatin-M24 in hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12656" sboTerm="SBO:0000627" id="R_MAR12656" name="exchange reaction for cerivastatin-M24 in hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -491245,7 +490233,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12656">
+            <rdf:Description rdf:about="#R_MAR12656">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_crvsm24_e"/>
@@ -491256,10 +490244,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03518e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03518e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12657" sboTerm="SBO:0000627" id="MAR12657" name="exchange reaction for cyclosporine in intestinal lumen" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12657" sboTerm="SBO:0000627" id="R_MAR12657" name="exchange reaction for cyclosporine in intestinal lumen" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -491267,7 +490255,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12657">
+            <rdf:Description rdf:about="#R_MAR12657">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_csa_e"/>
@@ -491278,10 +490266,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03520e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03520e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12658" sboTerm="SBO:0000627" id="MAR12658" name="exchange reaction for cyclosporine-sulphate in hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12658" sboTerm="SBO:0000627" id="R_MAR12658" name="exchange reaction for cyclosporine-sulphate in hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -491289,7 +490277,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12658">
+            <rdf:Description rdf:about="#R_MAR12658">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_csasulp_e"/>
@@ -491300,10 +490288,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03521e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03521e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12659" sboTerm="SBO:0000627" id="MAR12659" name="exchange reaction for cysteine-conjugate-acetaminophen in hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12659" sboTerm="SBO:0000627" id="R_MAR12659" name="exchange reaction for cysteine-conjugate-acetaminophen in hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -491311,7 +490299,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12659">
+            <rdf:Description rdf:about="#R_MAR12659">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_cysacmp_e"/>
@@ -491322,10 +490310,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03526e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03526e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12660" sboTerm="SBO:0000627" id="MAR12660" name="exchange reaction for deoxy-fluvastatin-dinor in hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12660" sboTerm="SBO:0000627" id="R_MAR12660" name="exchange reaction for deoxy-fluvastatin-dinor in hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -491333,7 +490321,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12660">
+            <rdf:Description rdf:about="#R_MAR12660">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_deoxfvs_e"/>
@@ -491344,10 +490332,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03546e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03546e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12661" sboTerm="SBO:0000627" id="MAR12661" name="exchange reaction for N-desisopropyl-fluvastatin in bile" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12661" sboTerm="SBO:0000627" id="R_MAR12661" name="exchange reaction for N-desisopropyl-fluvastatin in bile" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -491355,7 +490343,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12661">
+            <rdf:Description rdf:about="#R_MAR12661">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_desfvs_e"/>
@@ -491366,10 +490354,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03547e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03547e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12662" sboTerm="SBO:0000627" id="MAR12662" name="exchange reaction for dehydro-gliclazide in hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12662" sboTerm="SBO:0000627" id="R_MAR12662" name="exchange reaction for dehydro-gliclazide in hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -491377,7 +490365,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12662">
+            <rdf:Description rdf:about="#R_MAR12662">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_dhglz_e"/>
@@ -491388,10 +490376,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03549e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03549e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12663" sboTerm="SBO:0000627" id="MAR12663" name="exchange reaction of desacyl dehydro-pravastatin in hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12663" sboTerm="SBO:0000627" id="R_MAR12663" name="exchange reaction of desacyl dehydro-pravastatin in hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -491399,7 +490387,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12663">
+            <rdf:Description rdf:about="#R_MAR12663">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_dspvs_e"/>
@@ -491410,10 +490398,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03566e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03566e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12664" sboTerm="SBO:0000627" id="MAR12664" name="exchange reaction for 31-O-Desmethyl,19-Hydroxy,37, 39-Epoxy-tacrolimus in hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12664" sboTerm="SBO:0000627" id="R_MAR12664" name="exchange reaction for 31-O-Desmethyl,19-Hydroxy,37, 39-Epoxy-tacrolimus in hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -491421,7 +490409,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12664">
+            <rdf:Description rdf:about="#R_MAR12664">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_epoxtac_e"/>
@@ -491432,10 +490420,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03572e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03572e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12665" sboTerm="SBO:0000627" id="MAR12665" name="exchange reaction for fluvastatin in intestinal lumen" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12665" sboTerm="SBO:0000627" id="R_MAR12665" name="exchange reaction for fluvastatin in intestinal lumen" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -491443,7 +490431,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12665">
+            <rdf:Description rdf:about="#R_MAR12665">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_fvs_e"/>
@@ -491454,10 +490442,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03579e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03579e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12666" sboTerm="SBO:0000627" id="MAR12666" name="exchange reaction for des-isopropyl-dihydro-fluvastatin-tetranor in hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12666" sboTerm="SBO:0000627" id="R_MAR12666" name="exchange reaction for des-isopropyl-dihydro-fluvastatin-tetranor in hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -491465,7 +490453,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12666">
+            <rdf:Description rdf:about="#R_MAR12666">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_fvstet_e"/>
@@ -491476,10 +490464,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03582e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03582e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12667" sboTerm="SBO:0000627" id="MAR12667" name="exchange reaction for des-isopropyl-dihydro-fluvastatin-tetranor-glucuronide in hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12667" sboTerm="SBO:0000627" id="R_MAR12667" name="exchange reaction for des-isopropyl-dihydro-fluvastatin-tetranor-glucuronide in hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -491487,7 +490475,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12667">
+            <rdf:Description rdf:about="#R_MAR12667">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_fvstetglu_e"/>
@@ -491498,10 +490486,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03583e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03583e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12668" sboTerm="SBO:0000627" id="MAR12668" name="exchange reaction for glucuronide-conjugate of 3-methoxy-acetaminophen in hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12668" sboTerm="SBO:0000627" id="R_MAR12668" name="exchange reaction for glucuronide-conjugate of 3-methoxy-acetaminophen in hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -491509,7 +490497,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12668">
+            <rdf:Description rdf:about="#R_MAR12668">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_glc3meacp_e"/>
@@ -491520,10 +490508,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03594e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03594e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12669" sboTerm="SBO:0000627" id="MAR12669" name="exchange reaction for gliclazide in intestinal lumen" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12669" sboTerm="SBO:0000627" id="R_MAR12669" name="exchange reaction for gliclazide in intestinal lumen" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -491531,7 +490519,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12669">
+            <rdf:Description rdf:about="#R_MAR12669">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_glz_e"/>
@@ -491542,10 +490530,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03634e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03634e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12670" sboTerm="SBO:0000627" id="MAR12670" name="exchange reaction for glucuronide-thiomethyl-acetaminophen conjugate in hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12670" sboTerm="SBO:0000627" id="R_MAR12670" name="exchange reaction for glucuronide-thiomethyl-acetaminophen conjugate in hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -491553,7 +490541,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12670">
+            <rdf:Description rdf:about="#R_MAR12670">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_gtacmp_e"/>
@@ -491564,10 +490552,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03636e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03636e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12671" sboTerm="SBO:0000627" id="MAR12671" name="exchange reaction for ibuprofen_R in intestinal lumen" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12671" sboTerm="SBO:0000627" id="R_MAR12671" name="exchange reaction for ibuprofen_R in intestinal lumen" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -491575,7 +490563,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12671">
+            <rdf:Description rdf:about="#R_MAR12671">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_ibup__R_e"/>
@@ -491586,10 +490574,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03686e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03686e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12672" sboTerm="SBO:0000627" id="MAR12672" name="exchange reaction for ibuprofen_S in intestinal lumen" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12672" sboTerm="SBO:0000627" id="R_MAR12672" name="exchange reaction for ibuprofen_S in intestinal lumen" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -491597,7 +490585,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12672">
+            <rdf:Description rdf:about="#R_MAR12672">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_ibup__S_e"/>
@@ -491608,10 +490596,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03687e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03687e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12673" sboTerm="SBO:0000627" id="MAR12673" name="exchange reaction for ibuprofen acyl glucuronide in portal blood" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12673" sboTerm="SBO:0000627" id="R_MAR12673" name="exchange reaction for ibuprofen acyl glucuronide in portal blood" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -491619,7 +490607,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12673">
+            <rdf:Description rdf:about="#R_MAR12673">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_ibupgluc_e"/>
@@ -491630,10 +490618,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03690e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03690e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12674" sboTerm="SBO:0000627" id="MAR12674" name="exchange reaction for 3-hydroxy-iso-delta-4,5-hydroxy acid form of lovastatin in bile" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12674" sboTerm="SBO:0000627" id="R_MAR12674" name="exchange reaction for 3-hydroxy-iso-delta-4,5-hydroxy acid form of lovastatin in bile" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -491641,7 +490629,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12674">
+            <rdf:Description rdf:about="#R_MAR12674">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_isolvstacid_e"/>
@@ -491652,10 +490640,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03705e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03705e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12675" sboTerm="SBO:0000627" id="MAR12675" name="exchange reaction for Losartan-E3174 in portal blood" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12675" sboTerm="SBO:0000627" id="R_MAR12675" name="exchange reaction for Losartan-E3174 in portal blood" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -491663,7 +490651,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12675">
+            <rdf:Description rdf:about="#R_MAR12675">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_lst4exp_e"/>
@@ -491674,10 +490662,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03728e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03728e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12676" sboTerm="SBO:0000627" id="MAR12676" name="exchange reaction for losartan in intestinal lumen" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12676" sboTerm="SBO:0000627" id="R_MAR12676" name="exchange reaction for losartan in intestinal lumen" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -491685,7 +490673,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12676">
+            <rdf:Description rdf:about="#R_MAR12676">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_lstn_e"/>
@@ -491696,10 +490684,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03729e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03729e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12677" sboTerm="SBO:0000627" id="MAR12677" name="exchange reaction for Losartan-N1-glucuronide in hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12677" sboTerm="SBO:0000627" id="R_MAR12677" name="exchange reaction for Losartan-N1-glucuronide in hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -491707,7 +490695,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12677">
+            <rdf:Description rdf:about="#R_MAR12677">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_lstn1gluc_e"/>
@@ -491718,10 +490706,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03730e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03730e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12678" sboTerm="SBO:0000627" id="MAR12678" name="exchange reaction for Losartan-M1 in hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12678" sboTerm="SBO:0000627" id="R_MAR12678" name="exchange reaction for Losartan-M1 in hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -491729,7 +490717,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12678">
+            <rdf:Description rdf:about="#R_MAR12678">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_lstnm1_e"/>
@@ -491740,10 +490728,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03731e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03731e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12679" sboTerm="SBO:0000627" id="MAR12679" name="exchange reaction for Losartan-M2 in hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12679" sboTerm="SBO:0000627" id="R_MAR12679" name="exchange reaction for Losartan-M2 in hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -491751,7 +490739,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12679">
+            <rdf:Description rdf:about="#R_MAR12679">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_lstnm2_e"/>
@@ -491762,10 +490750,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03732e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03732e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12680" sboTerm="SBO:0000627" id="MAR12680" name="exchange reaction for Losartan-M4 (glucuronide derivative) in hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12680" sboTerm="SBO:0000627" id="R_MAR12680" name="exchange reaction for Losartan-M4 (glucuronide derivative) in hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -491773,7 +490761,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12680">
+            <rdf:Description rdf:about="#R_MAR12680">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_lstnm4_e"/>
@@ -491784,10 +490772,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03733e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03733e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12681" sboTerm="SBO:0000627" id="MAR12681" name="exchange reaction for Losartan-M5 in hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12681" sboTerm="SBO:0000627" id="R_MAR12681" name="exchange reaction for Losartan-M5 in hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -491795,7 +490783,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12681">
+            <rdf:Description rdf:about="#R_MAR12681">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_lstnm5_e"/>
@@ -491806,10 +490794,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03734e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03734e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12682" sboTerm="SBO:0000627" id="MAR12682" name="exchange reaction for Losartan-N2-glucuronide / Losartan-M7 in portal blood" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12682" sboTerm="SBO:0000627" id="R_MAR12682" name="exchange reaction for Losartan-N2-glucuronide / Losartan-M7 in portal blood" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -491817,7 +490805,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12682">
+            <rdf:Description rdf:about="#R_MAR12682">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_lstnm7_e"/>
@@ -491828,10 +490816,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03735e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03735e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12683" sboTerm="SBO:0000627" id="MAR12683" name="exchange reaction for lovastatin in intestinal lumen" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12683" sboTerm="SBO:0000627" id="R_MAR12683" name="exchange reaction for lovastatin in intestinal lumen" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -491839,7 +490827,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12683">
+            <rdf:Description rdf:about="#R_MAR12683">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_lvst_e"/>
@@ -491850,10 +490838,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03736e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03736e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12684" sboTerm="SBO:0000627" id="MAR12684" name="exchange reaction for midazolam in intestinal lumen" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12684" sboTerm="SBO:0000627" id="R_MAR12684" name="exchange reaction for midazolam in intestinal lumen" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -491861,7 +490849,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12684">
+            <rdf:Description rdf:about="#R_MAR12684">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_mdz_e"/>
@@ -491872,10 +490860,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03756e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03756e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12685" sboTerm="SBO:0000627" id="MAR12685" name="exchange reaction for midazolam-glucuronide in hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12685" sboTerm="SBO:0000627" id="R_MAR12685" name="exchange reaction for midazolam-glucuronide in hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -491883,7 +490871,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12685">
+            <rdf:Description rdf:about="#R_MAR12685">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_mdzglc_e"/>
@@ -491894,10 +490882,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03757e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03757e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12686" sboTerm="SBO:0000627" id="MAR12686" name="exchange reaction for acetaminophen-mercapturate-conjugate in portal blood" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12686" sboTerm="SBO:0000627" id="R_MAR12686" name="exchange reaction for acetaminophen-mercapturate-conjugate in portal blood" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -491905,7 +490893,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12686">
+            <rdf:Description rdf:about="#R_MAR12686">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_meracmp_e"/>
@@ -491916,10 +490904,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03759e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03759e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12687" sboTerm="SBO:0000627" id="MAR12687" name="exchange reaction for Methyl-hydroxy-gliclazide in hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12687" sboTerm="SBO:0000627" id="R_MAR12687" name="exchange reaction for Methyl-hydroxy-gliclazide in hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -491927,7 +490915,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12687">
+            <rdf:Description rdf:about="#R_MAR12687">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_mhglz_e"/>
@@ -491938,10 +490926,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03770e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03770e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12688" sboTerm="SBO:0000627" id="MAR12688" name="exchange reaction for N-desmethyl-rosuvastatin in bile" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12688" sboTerm="SBO:0000627" id="R_MAR12688" name="exchange reaction for N-desmethyl-rosuvastatin in bile" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -491949,7 +490937,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12688">
+            <rdf:Description rdf:about="#R_MAR12688">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_ndersv_e"/>
@@ -491960,10 +490948,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03780e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03780e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12689" sboTerm="SBO:0000627" id="MAR12689" name="exchange reaction of acid metabolite of nifedipine in portal vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12689" sboTerm="SBO:0000627" id="R_MAR12689" name="exchange reaction of acid metabolite of nifedipine in portal vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -491971,7 +490959,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12689">
+            <rdf:Description rdf:about="#R_MAR12689">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_nfdac_e"/>
@@ -491982,10 +490970,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03781e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03781e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12690" sboTerm="SBO:0000627" id="MAR12690" name="exchange reaction of lactone form of nifedipine in portal vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12690" sboTerm="SBO:0000627" id="R_MAR12690" name="exchange reaction of lactone form of nifedipine in portal vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -491993,7 +490981,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12690">
+            <rdf:Description rdf:about="#R_MAR12690">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_nfdlac_e"/>
@@ -492004,10 +490992,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03782e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03782e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12691" sboTerm="SBO:0000627" id="MAR12691" name="exchange reaction of nitropyridine metabolite of nifedipine in portal vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12691" sboTerm="SBO:0000627" id="R_MAR12691" name="exchange reaction of nitropyridine metabolite of nifedipine in portal vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -492015,7 +491003,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12691">
+            <rdf:Description rdf:about="#R_MAR12691">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_nfdnpy_e"/>
@@ -492026,10 +491014,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03783e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03783e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12692" sboTerm="SBO:0000627" id="MAR12692" name="exchange reaction of hydroxy metabolite of nifedipine in portal vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12692" sboTerm="SBO:0000627" id="R_MAR12692" name="exchange reaction of hydroxy metabolite of nifedipine in portal vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -492037,7 +491025,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12692">
+            <rdf:Description rdf:about="#R_MAR12692">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_nfdoh_e"/>
@@ -492048,10 +491036,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03784e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03784e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12693" sboTerm="SBO:0000627" id="MAR12693" name="exchange reaction for oxypurinol in portal blood" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12693" sboTerm="SBO:0000627" id="R_MAR12693" name="exchange reaction for oxypurinol in portal blood" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -492059,7 +491047,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12693">
+            <rdf:Description rdf:about="#R_MAR12693">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_oxyp_e"/>
@@ -492070,10 +491058,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03801e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03801e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12694" sboTerm="SBO:0000627" id="MAR12694" name="exchange reaction for oxypurinol-1-riboside in hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12694" sboTerm="SBO:0000627" id="R_MAR12694" name="exchange reaction for oxypurinol-1-riboside in hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -492081,7 +491069,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12694">
+            <rdf:Description rdf:about="#R_MAR12694">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_oxy1rb_e"/>
@@ -492092,10 +491080,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03799e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03799e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12695" sboTerm="SBO:0000627" id="MAR12695" name="exchange reaction for oxypurinol-7-riboside in hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12695" sboTerm="SBO:0000627" id="R_MAR12695" name="exchange reaction for oxypurinol-7-riboside in hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -492103,7 +491091,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12695">
+            <rdf:Description rdf:about="#R_MAR12695">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_oxy7rb_e"/>
@@ -492114,10 +491102,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03800e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03800e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12696" sboTerm="SBO:0000627" id="MAR12696" name="exchnage reaction for des-isoproylpropionic-acid-fluvastatin in hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12696" sboTerm="SBO:0000627" id="R_MAR12696" name="exchnage reaction for des-isoproylpropionic-acid-fluvastatin in hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -492125,7 +491113,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12696">
+            <rdf:Description rdf:about="#R_MAR12696">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_profvs_e"/>
@@ -492136,10 +491124,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03892e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03892e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12697" sboTerm="SBO:0000627" id="MAR12697" name="exchange reaction for pitavastatin in intestinal lumen" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12697" sboTerm="SBO:0000627" id="R_MAR12697" name="exchange reaction for pitavastatin in intestinal lumen" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -492147,7 +491135,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12697">
+            <rdf:Description rdf:about="#R_MAR12697">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_ptvst_e"/>
@@ -492158,10 +491146,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03911e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03911e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12698" sboTerm="SBO:0000627" id="MAR12698" name="exchange reaction for pravastatin-lactone in hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12698" sboTerm="SBO:0000627" id="R_MAR12698" name="exchange reaction for pravastatin-lactone in hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -492169,7 +491157,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12698">
+            <rdf:Description rdf:about="#R_MAR12698">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_ptvstlac_e"/>
@@ -492180,10 +491168,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03913e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03913e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12699" sboTerm="SBO:0000627" id="MAR12699" name="exchange reaction for pitavastatin-M3 in bile" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12699" sboTerm="SBO:0000627" id="R_MAR12699" name="exchange reaction for pitavastatin-M3 in bile" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -492191,7 +491179,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12699">
+            <rdf:Description rdf:about="#R_MAR12699">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_ptvstm3_e"/>
@@ -492202,10 +491190,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03915e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03915e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12700" sboTerm="SBO:0000627" id="MAR12700" name="exchange reaction for pravastatin in intestinal lumen" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12700" sboTerm="SBO:0000627" id="R_MAR12700" name="exchange reaction for pravastatin in intestinal lumen" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -492213,7 +491201,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12700">
+            <rdf:Description rdf:about="#R_MAR12700">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_pvs_e"/>
@@ -492224,10 +491212,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03916e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03916e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12701" sboTerm="SBO:0000627" id="MAR12701" name="exchange reaction of pravastatin glucuronide in hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12701" sboTerm="SBO:0000627" id="R_MAR12701" name="exchange reaction of pravastatin glucuronide in hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -492235,7 +491223,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12701">
+            <rdf:Description rdf:about="#R_MAR12701">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_pvsgluc_e"/>
@@ -492246,10 +491234,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03917e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03917e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12702" sboTerm="SBO:0000627" id="MAR12702" name="exchange reaction for rosuvastatin in intestinal lumen" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12702" sboTerm="SBO:0000627" id="R_MAR12702" name="exchange reaction for rosuvastatin in intestinal lumen" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -492257,7 +491245,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12702">
+            <rdf:Description rdf:about="#R_MAR12702">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_rsv_e"/>
@@ -492268,10 +491256,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03918e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03918e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12703" sboTerm="SBO:0000627" id="MAR12703" name="exchange reaction for rosuvastatin-5S-lactone in bile" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12703" sboTerm="SBO:0000627" id="R_MAR12703" name="exchange reaction for rosuvastatin-5S-lactone in bile" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -492279,7 +491267,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12703">
+            <rdf:Description rdf:about="#R_MAR12703">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_rsvlac_e"/>
@@ -492290,10 +491278,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03920e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03920e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12704" sboTerm="SBO:0000627" id="MAR12704" name="exchange reaction for sulphate-conjugate-3-methoxy-acetaminophen in hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12704" sboTerm="SBO:0000627" id="R_MAR12704" name="exchange reaction for sulphate-conjugate-3-methoxy-acetaminophen in hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -492301,7 +491289,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12704">
+            <rdf:Description rdf:about="#R_MAR12704">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_s3meacmp_e"/>
@@ -492312,10 +491300,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03921e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03921e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12705" sboTerm="SBO:0000627" id="MAR12705" name="exchange reaction for simvastatin in intestinal lumen" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12705" sboTerm="SBO:0000627" id="R_MAR12705" name="exchange reaction for simvastatin in intestinal lumen" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -492323,7 +491311,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12705">
+            <rdf:Description rdf:about="#R_MAR12705">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_smv_e"/>
@@ -492334,10 +491322,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03934e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03934e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12706" sboTerm="SBO:0000627" id="MAR12706" name="exchange reaction for simvastatin dihydroxy acid form in hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12706" sboTerm="SBO:0000627" id="R_MAR12706" name="exchange reaction for simvastatin dihydroxy acid form in hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -492345,7 +491333,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12706">
+            <rdf:Description rdf:about="#R_MAR12706">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_smvacid_e"/>
@@ -492356,10 +491344,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03935e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03935e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12707" sboTerm="SBO:0000627" id="MAR12707" name="exchange reaction for sulphate-thiomethyl-acetaminophen conjugate in hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12707" sboTerm="SBO:0000627" id="R_MAR12707" name="exchange reaction for sulphate-thiomethyl-acetaminophen conjugate in hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -492367,7 +491355,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12707">
+            <rdf:Description rdf:about="#R_MAR12707">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_stacmp_e"/>
@@ -492378,10 +491366,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03952e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03952e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12708" sboTerm="SBO:0000627" id="MAR12708" name="exchange reaction for acetaminophen-sulphate in hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12708" sboTerm="SBO:0000627" id="R_MAR12708" name="exchange reaction for acetaminophen-sulphate in hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -492389,7 +491377,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12708">
+            <rdf:Description rdf:about="#R_MAR12708">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_sulpacmp_e"/>
@@ -492400,10 +491388,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03958e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03958e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12709" sboTerm="SBO:0000627" id="MAR12709" name="exchange reaction for tacrolimus in intestinal lumen" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12709" sboTerm="SBO:0000627" id="R_MAR12709" name="exchange reaction for tacrolimus in intestinal lumen" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -492411,7 +491399,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12709">
+            <rdf:Description rdf:about="#R_MAR12709">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_tacr_e"/>
@@ -492422,10 +491410,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03959e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03959e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12710" sboTerm="SBO:0000627" id="MAR12710" name="exchange reaction for taurine conjugate of S-ibuprofen in hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12710" sboTerm="SBO:0000627" id="R_MAR12710" name="exchange reaction for taurine conjugate of S-ibuprofen in hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -492433,7 +491421,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12710">
+            <rdf:Description rdf:about="#R_MAR12710">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_tauribup__S_e"/>
@@ -492444,10 +491432,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03961e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03961e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12711" sboTerm="SBO:0000627" id="MAR12711" name="exchange reaction for threo-isomer of fluvastain in hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12711" sboTerm="SBO:0000627" id="R_MAR12711" name="exchange reaction for threo-isomer of fluvastain in hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -492455,7 +491443,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12711">
+            <rdf:Description rdf:about="#R_MAR12711">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_thrfvs_e"/>
@@ -492466,10 +491454,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03985e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03985e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12712" sboTerm="SBO:0000627" id="MAR12712" name="exchange reaction for trans-lactone-fluvastatin in hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12712" sboTerm="SBO:0000627" id="R_MAR12712" name="exchange reaction for trans-lactone-fluvastatin in hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -492477,7 +491465,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12712">
+            <rdf:Description rdf:about="#R_MAR12712">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_tlacfvs_e"/>
@@ -492488,10 +491476,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03998e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03998e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12713" sboTerm="SBO:0000627" id="MAR12713" name="exchange reaction for torasemide in intestinal lumen" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12713" sboTerm="SBO:0000627" id="R_MAR12713" name="exchange reaction for torasemide in intestinal lumen" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -492499,7 +491487,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12713">
+            <rdf:Description rdf:about="#R_MAR12713">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_tmd_e"/>
@@ -492510,10 +491498,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM04000e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04000e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12714" sboTerm="SBO:0000627" id="MAR12714" name="exchange reaction for Torasemide-M1 in hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12714" sboTerm="SBO:0000627" id="R_MAR12714" name="exchange reaction for Torasemide-M1 in hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -492521,7 +491509,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12714">
+            <rdf:Description rdf:about="#R_MAR12714">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_tmdm1_e"/>
@@ -492532,10 +491520,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM04001e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04001e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12715" sboTerm="SBO:0000627" id="MAR12715" name="exchange reaction for Torasemide-M3 in hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12715" sboTerm="SBO:0000627" id="R_MAR12715" name="exchange reaction for Torasemide-M3 in hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -492543,7 +491531,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12715">
+            <rdf:Description rdf:about="#R_MAR12715">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_tmdm3_e"/>
@@ -492554,10 +491542,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM04002e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04002e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12716" sboTerm="SBO:0000627" id="MAR12716" name="exchange reaction for Torasemide-M5 in hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12716" sboTerm="SBO:0000627" id="R_MAR12716" name="exchange reaction for Torasemide-M5 in hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -492565,7 +491553,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12716">
+            <rdf:Description rdf:about="#R_MAR12716">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_tmdm5_e"/>
@@ -492576,10 +491564,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM04003e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04003e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12717" sboTerm="SBO:0000627" id="MAR12717" name="exchange reaction of triol metabolite of pravastatin in hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12717" sboTerm="SBO:0000627" id="R_MAR12717" name="exchange reaction of triol metabolite of pravastatin in hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -492587,7 +491575,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12717">
+            <rdf:Description rdf:about="#R_MAR12717">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_tripvs_e"/>
@@ -492598,10 +491586,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM04007e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04007e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12718" sboTerm="SBO:0000627" id="MAR12718" name="exchange reaction for thiomethyl-sulphoxide-acetaminophen-glucuronide in hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12718" sboTerm="SBO:0000627" id="R_MAR12718" name="exchange reaction for thiomethyl-sulphoxide-acetaminophen-glucuronide in hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -492609,7 +491597,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12718">
+            <rdf:Description rdf:about="#R_MAR12718">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_tsacmgluc_e"/>
@@ -492620,10 +491608,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM04038e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04038e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12719" sboTerm="SBO:0000627" id="MAR12719" name="exchange reaction for thiomethyl-sulphoxide-acetaminophen-sulphate in hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12719" sboTerm="SBO:0000627" id="R_MAR12719" name="exchange reaction for thiomethyl-sulphoxide-acetaminophen-sulphate in hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -492631,7 +491619,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12719">
+            <rdf:Description rdf:about="#R_MAR12719">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_tsacmsul_e"/>
@@ -492642,10 +491630,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM04039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04039e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12720" sboTerm="SBO:0000176" id="MAR12720" name="glucuronidation of fluvastatin" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12720" sboTerm="SBO:0000176" id="R_MAR12720" name="glucuronidation of fluvastatin" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -492654,7 +491642,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12720">
+            <rdf:Description rdf:about="#R_MAR12720">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FVSGLUChc"/>
@@ -492665,16 +491653,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03109r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03579r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03109r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03579r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03581r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03581r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12721" sboTerm="SBO:0000176" id="MAR12721" name="glucuronidation of des-isopropyl-dihydro-fluvastatin-tetranor" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12721" sboTerm="SBO:0000176" id="R_MAR12721" name="glucuronidation of des-isopropyl-dihydro-fluvastatin-tetranor" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -492683,7 +491671,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12721">
+            <rdf:Description rdf:about="#R_MAR12721">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FVSTETGLUhc"/>
@@ -492694,16 +491682,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03109r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03582r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03109r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03582r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03583r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03583r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12722" sboTerm="SBO:0000185" id="MAR12722" name="exit of des-isopropyl-dihydro-fluvastatin-tetranor-glucuronide into hepatic vein for excretion in urine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12722" sboTerm="SBO:0000185" id="R_MAR12722" name="exit of des-isopropyl-dihydro-fluvastatin-tetranor-glucuronide into hepatic vein for excretion in urine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -492712,7 +491700,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12722">
+            <rdf:Description rdf:about="#R_MAR12722">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FVSTETGLUtev"/>
@@ -492723,13 +491711,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03583c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03583c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03583e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03583e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12723" sboTerm="SBO:0000185" id="MAR12723" name="exit of des-isopropyl-dihydro-fluvastatin-tetranor into hepatic vein for excretion in urine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12723" sboTerm="SBO:0000185" id="R_MAR12723" name="exit of des-isopropyl-dihydro-fluvastatin-tetranor into hepatic vein for excretion in urine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -492738,7 +491726,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12723">
+            <rdf:Description rdf:about="#R_MAR12723">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FVSTETtev"/>
@@ -492749,13 +491737,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03582c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03582c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03582e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03582e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12724" sboTerm="SBO:0000176" id="MAR12724" name="hydrolysis of lactone to fluvastatin in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12724" sboTerm="SBO:0000176" id="R_MAR12724" name="hydrolysis of lactone to fluvastatin in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -492764,7 +491752,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12724">
+            <rdf:Description rdf:about="#R_MAR12724">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FVShc"/>
@@ -492775,14 +491763,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03998r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03998r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03579r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03579r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12725" sboTerm="SBO:0000185" id="MAR12725" name="efflux of fluvastatin into bile for excretion into faeces" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12725" sboTerm="SBO:0000185" id="R_MAR12725" name="efflux of fluvastatin into bile for excretion into faeces" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -492792,7 +491780,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12725">
+            <rdf:Description rdf:about="#R_MAR12725">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FVSteb"/>
@@ -492803,18 +491791,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03579c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03579c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03579e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03579e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12726" sboTerm="SBO:0000185" id="MAR12726" name="efflux of fluvastatin from enterocytes into portal blood" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12726" sboTerm="SBO:0000185" id="R_MAR12726" name="efflux of fluvastatin from enterocytes into portal blood" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -492823,7 +491811,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12726">
+            <rdf:Description rdf:about="#R_MAR12726">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FVStep"/>
@@ -492834,13 +491822,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03579c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03579c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03579e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03579e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12727" sboTerm="SBO:0000185" id="MAR12727" name="uptake of fluvastatin by enterocytes" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12727" sboTerm="SBO:0000185" id="R_MAR12727" name="uptake of fluvastatin by enterocytes" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -492849,7 +491837,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12727">
+            <rdf:Description rdf:about="#R_MAR12727">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FVStu"/>
@@ -492860,12 +491848,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03579e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03579e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03579c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03579c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -492877,7 +491865,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12728" sboTerm="SBO:0000176" id="MAR12728" name="glucuronidation of 3-methoxy-acetaminophen in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12728" sboTerm="SBO:0000176" id="R_MAR12728" name="glucuronidation of 3-methoxy-acetaminophen in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -492886,7 +491874,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12728">
+            <rdf:Description rdf:about="#R_MAR12728">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.17"/>
@@ -492898,14 +491886,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02871r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03109r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03244r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02871r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03109r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03244r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02877r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03594r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02877r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03594r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -492921,7 +491909,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12729" sboTerm="SBO:0000185" id="MAR12729" name="efflux of glucuronide-conjugate of 3-methoxy-acetaminophen into hepatic vein" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12729" sboTerm="SBO:0000185" id="R_MAR12729" name="efflux of glucuronide-conjugate of 3-methoxy-acetaminophen into hepatic vein" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -492930,7 +491918,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12729">
+            <rdf:Description rdf:about="#R_MAR12729">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GLC3MEACPtev"/>
@@ -492941,18 +491929,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03594c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03594c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03594e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03594e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12730" sboTerm="SBO:0000185" id="MAR12730" name="excretion of gliclazide into bile" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12730" sboTerm="SBO:0000185" id="R_MAR12730" name="excretion of gliclazide into bile" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -492962,7 +491950,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12730">
+            <rdf:Description rdf:about="#R_MAR12730">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GLZABCteb"/>
@@ -492973,18 +491961,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03634c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03634c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03634e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03634e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12731" sboTerm="SBO:0000185" id="MAR12731" name="uptake of gliclazide into enterocytes" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12731" sboTerm="SBO:0000185" id="R_MAR12731" name="uptake of gliclazide into enterocytes" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -492993,7 +491981,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12731">
+            <rdf:Description rdf:about="#R_MAR12731">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GLZtd"/>
@@ -493004,13 +491992,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03634e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03634e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03634c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03634c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12732" sboTerm="SBO:0000176" id="MAR12732" name="glucuronidation of thiomethyl-acetaminophen conjugate in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12732" sboTerm="SBO:0000176" id="R_MAR12732" name="glucuronidation of thiomethyl-acetaminophen conjugate in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -493019,7 +492007,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12732">
+            <rdf:Description rdf:about="#R_MAR12732">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GTACMPhr"/>
@@ -493030,16 +492018,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03109r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03999r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03109r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03999r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03636r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03636r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12733" sboTerm="SBO:0000185" id="MAR12733" name="efflux of glucuronide-thiomethyl-acetaminophen conjugate into hepatic vein" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12733" sboTerm="SBO:0000185" id="R_MAR12733" name="efflux of glucuronide-thiomethyl-acetaminophen conjugate into hepatic vein" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -493048,7 +492036,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12733">
+            <rdf:Description rdf:about="#R_MAR12733">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GTACMPtev"/>
@@ -493059,18 +492047,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03636c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03636c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03636e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03636e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12734" sboTerm="SBO:0000185" id="MAR12734" name="uptake of ibuprofen acyl glucuronide into hepatocytes" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12734" sboTerm="SBO:0000185" id="R_MAR12734" name="uptake of ibuprofen acyl glucuronide into hepatocytes" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -493078,7 +492066,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12734">
+            <rdf:Description rdf:about="#R_MAR12734">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/IBUPGLUCtchep"/>
@@ -493089,13 +492077,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03690e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03690e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03690c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03690c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12735" sboTerm="SBO:0000185" id="MAR12735" name="release of iboprofen acyl glucuronides into the portal blood" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12735" sboTerm="SBO:0000185" id="R_MAR12735" name="release of iboprofen acyl glucuronides into the portal blood" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -493104,7 +492092,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12735">
+            <rdf:Description rdf:about="#R_MAR12735">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/IBUPGLUCtpvb"/>
@@ -493115,18 +492103,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03690c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03690c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03690e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03690e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12736" sboTerm="SBO:0000176" id="MAR12736" name="glucuronidation of ibuprofen in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12736" sboTerm="SBO:0000176" id="R_MAR12736" name="glucuronidation of ibuprofen in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -493136,7 +492124,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12736">
+            <rdf:Description rdf:about="#R_MAR12736">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.17"/>
@@ -493148,12 +492136,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03109r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03687r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03109r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03687r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03106r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03690r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03690r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -493168,7 +492156,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12737" sboTerm="SBO:0000176" id="MAR12737" name="thioesterification of ibuprofen_R in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12737" sboTerm="SBO:0000176" id="R_MAR12737" name="thioesterification of ibuprofen_R in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -493177,7 +492165,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12737">
+            <rdf:Description rdf:about="#R_MAR12737">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.3"/>
@@ -493189,20 +492177,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03686c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03686c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01334c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03688c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03688c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG3961"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12738" sboTerm="SBO:0000176" id="MAR12738" name="oxidation of R-ibuprofen to 2-hydroxy-ibuprofen in heaptocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12738" sboTerm="SBO:0000176" id="R_MAR12738" name="oxidation of R-ibuprofen to 2-hydroxy-ibuprofen in heaptocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -493211,7 +492199,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12738">
+            <rdf:Description rdf:about="#R_MAR12738">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.13.-"/>
@@ -493224,15 +492212,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03686r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03686r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03183r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03183r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -493242,7 +492230,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12739" sboTerm="SBO:0000176" id="MAR12739" name="oxidation of R-ibuprofen to 3-hydroxy-ibuprofen in heaptocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12739" sboTerm="SBO:0000176" id="R_MAR12739" name="oxidation of R-ibuprofen to 3-hydroxy-ibuprofen in heaptocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -493251,7 +492239,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12739">
+            <rdf:Description rdf:about="#R_MAR12739">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.13.-"/>
@@ -493264,15 +492252,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03686r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03686r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03223r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03223r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -493282,7 +492270,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12740" sboTerm="SBO:0000176" id="MAR12740" name="oxidation of R-3-hydroxy ibuprofen to R-carboxy ibuprofen" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12740" sboTerm="SBO:0000176" id="R_MAR12740" name="oxidation of R-3-hydroxy ibuprofen to R-carboxy ibuprofen" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -493291,7 +492279,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12740">
+            <rdf:Description rdf:about="#R_MAR12740">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.13.-"/>
@@ -493303,19 +492291,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03223c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03223c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03505c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03505c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Cyp18a1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12741" sboTerm="SBO:0000176" id="MAR12741" name="chiral conversion of R to S form of iburpofen in hepatocytes" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12741" sboTerm="SBO:0000176" id="R_MAR12741" name="chiral conversion of R to S form of iburpofen in hepatocytes" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -493325,7 +492313,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12741">
+            <rdf:Description rdf:about="#R_MAR12741">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/5.1.99.4"/>
@@ -493337,16 +492325,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03688c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03688c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03689c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03689c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Amacr"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12742" sboTerm="SBO:0000185" id="MAR12742" name="uptake of ibuprofen-R into hepatocytes" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12742" sboTerm="SBO:0000185" id="R_MAR12742" name="uptake of ibuprofen-R into hepatocytes" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -493355,7 +492343,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12742">
+            <rdf:Description rdf:about="#R_MAR12742">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/IBUP_Rtdhep"/>
@@ -493366,15 +492354,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03120c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03686e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03120c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03686e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03120e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03686c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03120e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03686c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12743" sboTerm="SBO:0000185" id="MAR12743" name="passive diffusion of ibuprofen_R" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12743" sboTerm="SBO:0000185" id="R_MAR12743" name="passive diffusion of ibuprofen_R" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -493383,7 +492371,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12743">
+            <rdf:Description rdf:about="#R_MAR12743">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/IBUP_Rtdu"/>
@@ -493394,13 +492382,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03686e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03686e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03686c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03686c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12745" sboTerm="SBO:0000176" id="MAR12745" name="taurine conjugation of S-ibuprofen" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12745" sboTerm="SBO:0000176" id="R_MAR12745" name="taurine conjugation of S-ibuprofen" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -493408,7 +492396,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12745">
+            <rdf:Description rdf:about="#R_MAR12745">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/IBUP_SCONJhep"/>
@@ -493419,16 +492407,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02961c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03689c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02961c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03689c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03961c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03961c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12746" sboTerm="SBO:0000176" id="MAR12746" name="oxidation of S-ibuprofen to 1-hydroxy ibuprofen" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12746" sboTerm="SBO:0000176" id="R_MAR12746" name="oxidation of S-ibuprofen to 1-hydroxy ibuprofen" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -493437,7 +492425,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12746">
+            <rdf:Description rdf:about="#R_MAR12746">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.13.-"/>
@@ -493449,21 +492437,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03687r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03687r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01894r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01894r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Cyp18a1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12747" sboTerm="SBO:0000176" id="MAR12747" name="oxidation of S-ibuprofen to 2-hydroxy-ibuprofen in heaptocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12747" sboTerm="SBO:0000176" id="R_MAR12747" name="oxidation of S-ibuprofen to 2-hydroxy-ibuprofen in heaptocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -493472,7 +492460,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12747">
+            <rdf:Description rdf:about="#R_MAR12747">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.13.-"/>
@@ -493485,15 +492473,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03687r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03687r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03184r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03184r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -493503,7 +492491,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12748" sboTerm="SBO:0000176" id="MAR12748" name="oxidation of S-ibuprofen to 3-hydroxy-ibuprofen in heaptocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12748" sboTerm="SBO:0000176" id="R_MAR12748" name="oxidation of S-ibuprofen to 3-hydroxy-ibuprofen in heaptocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -493512,7 +492500,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12748">
+            <rdf:Description rdf:about="#R_MAR12748">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.13.-"/>
@@ -493525,15 +492513,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03687r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03687r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03224r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03224r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -493543,7 +492531,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12749" sboTerm="SBO:0000176" id="MAR12749" name="oxidation of S-3-hydroxy ibuprofen to S-carboxy ibuprofen" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12749" sboTerm="SBO:0000176" id="R_MAR12749" name="oxidation of S-3-hydroxy ibuprofen to S-carboxy ibuprofen" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -493552,7 +492540,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12749">
+            <rdf:Description rdf:about="#R_MAR12749">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.13.-"/>
@@ -493564,19 +492552,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03224c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03224c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03506c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03506c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Cyp18a1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12750" sboTerm="SBO:0000185" id="MAR12750" name="biliary excretion of ibuprofen from hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12750" sboTerm="SBO:0000185" id="R_MAR12750" name="biliary excretion of ibuprofen from hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -493586,7 +492574,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12750">
+            <rdf:Description rdf:about="#R_MAR12750">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/IBUP_Stbc"/>
@@ -493597,18 +492585,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03687c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03687c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03687e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03687e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12751" sboTerm="SBO:0000185" id="MAR12751" name="uptake of ibuprofen-S into hepatocytes" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12751" sboTerm="SBO:0000185" id="R_MAR12751" name="uptake of ibuprofen-S into hepatocytes" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -493617,7 +492605,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12751">
+            <rdf:Description rdf:about="#R_MAR12751">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/IBUP_Stdhep"/>
@@ -493628,15 +492616,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03120c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03687e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03120c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03687e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03120e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03687c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03120e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03687c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12752" sboTerm="SBO:0000185" id="MAR12752" name="passive diffusion of ibuprofen_S" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12752" sboTerm="SBO:0000185" id="R_MAR12752" name="passive diffusion of ibuprofen_S" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -493645,7 +492633,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12752">
+            <rdf:Description rdf:about="#R_MAR12752">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/IBUP_Stdu"/>
@@ -493656,13 +492644,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03687e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03687e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03687c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03687c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12753" sboTerm="SBO:0000176" id="MAR12753" name="acid catalyzed rearrangement of 6-beta-hydroxy-lovastatin-acid form" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12753" sboTerm="SBO:0000176" id="R_MAR12753" name="acid catalyzed rearrangement of 6-beta-hydroxy-lovastatin-acid form" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -493671,7 +492659,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12753">
+            <rdf:Description rdf:about="#R_MAR12753">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ISOLVSTAChep"/>
@@ -493682,13 +492670,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03297c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03297c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03705c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03705c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12754" sboTerm="SBO:0000185" id="MAR12754" name="release of 3-hydroxy-iso-delta-4,5-hydroxy acid form of lovastatin into bile" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12754" sboTerm="SBO:0000185" id="R_MAR12754" name="release of 3-hydroxy-iso-delta-4,5-hydroxy acid form of lovastatin into bile" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -493696,7 +492684,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12754">
+            <rdf:Description rdf:about="#R_MAR12754">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ISOLVSTtbc"/>
@@ -493707,21 +492695,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03705c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03705c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03705e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03705e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Mdr50"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12755" sboTerm="SBO:0000185" id="MAR12755" name="uptake of Losartan-E3174 into hepatocytes via diffusion" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12755" sboTerm="SBO:0000185" id="R_MAR12755" name="uptake of Losartan-E3174 into hepatocytes via diffusion" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -493730,7 +492718,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12755">
+            <rdf:Description rdf:about="#R_MAR12755">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/LST4EXPTDhc"/>
@@ -493741,13 +492729,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03728e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03728e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03728c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03728c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12756" sboTerm="SBO:0000176" id="MAR12756" name="oxidation of losartan to active metabolite EXP3174 (M6) in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12756" sboTerm="SBO:0000176" id="R_MAR12756" name="oxidation of losartan to active metabolite EXP3174 (M6) in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -493756,7 +492744,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12756">
+            <rdf:Description rdf:about="#R_MAR12756">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.13.-"/>
@@ -493768,13 +492756,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02630r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03729r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03729r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03728r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03728r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -493784,7 +492772,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12757" sboTerm="SBO:0000185" id="MAR12757" name="uptake of Losartan-E3174 into hepatocytes" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12757" sboTerm="SBO:0000185" id="R_MAR12757" name="uptake of Losartan-E3174 into hepatocytes" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -493793,7 +492781,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12757">
+            <rdf:Description rdf:about="#R_MAR12757">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/LST4EXPthc"/>
@@ -493804,15 +492792,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01442c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03728e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01442c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03728e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01442e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03728c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01442e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03728c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12758" sboTerm="SBO:0000176" id="MAR12758" name="formation of losartan-N1-glucuronide in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12758" sboTerm="SBO:0000176" id="R_MAR12758" name="formation of losartan-N1-glucuronide in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -493821,7 +492809,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12758">
+            <rdf:Description rdf:about="#R_MAR12758">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.17"/>
@@ -493833,12 +492821,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03109r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03729r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03109r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03729r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03106r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03730r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03730r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -493852,7 +492840,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12759" sboTerm="SBO:0000185" id="MAR12759" name="efflux of Losartan-N1-glucuronide into hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12759" sboTerm="SBO:0000185" id="R_MAR12759" name="efflux of Losartan-N1-glucuronide into hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -493861,7 +492849,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12759">
+            <rdf:Description rdf:about="#R_MAR12759">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/LSTN1GLUCtev"/>
@@ -493872,13 +492860,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03730c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03730c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03730e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03730e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12760" sboTerm="SBO:0000185" id="MAR12760" name="efflux of losartan by P-gp from the enterocytes into lumen" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12760" sboTerm="SBO:0000185" id="R_MAR12760" name="efflux of losartan by P-gp from the enterocytes into lumen" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -493888,7 +492876,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12760">
+            <rdf:Description rdf:about="#R_MAR12760">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.6.3.44"/>
@@ -493900,21 +492888,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03729c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03729c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03729e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03729e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Mdr50"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12761" sboTerm="SBO:0000176" id="MAR12761" name="oxidation of losartan to Losartan-M1 in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12761" sboTerm="SBO:0000176" id="R_MAR12761" name="oxidation of losartan to Losartan-M1 in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -493923,7 +492911,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12761">
+            <rdf:Description rdf:about="#R_MAR12761">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.13.-"/>
@@ -493935,15 +492923,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03729r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03729r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03731r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03731r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -493953,7 +492941,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12762" sboTerm="SBO:0000185" id="MAR12762" name="efflux of Losartan-M1 into hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12762" sboTerm="SBO:0000185" id="R_MAR12762" name="efflux of Losartan-M1 into hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -493962,7 +492950,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12762">
+            <rdf:Description rdf:about="#R_MAR12762">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/LSTNM1tev"/>
@@ -493973,13 +492961,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03731c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03731c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03731e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03731e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12763" sboTerm="SBO:0000176" id="MAR12763" name="oxidation of losartan to Losartan-M2 in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12763" sboTerm="SBO:0000176" id="R_MAR12763" name="oxidation of losartan to Losartan-M2 in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -493988,7 +492976,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12763">
+            <rdf:Description rdf:about="#R_MAR12763">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.13.-"/>
@@ -494000,15 +492988,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03729r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03729r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03732r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03732r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -494018,7 +493006,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12764" sboTerm="SBO:0000185" id="MAR12764" name="efflux of Losartan-M2 into hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12764" sboTerm="SBO:0000185" id="R_MAR12764" name="efflux of Losartan-M2 into hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -494027,7 +493015,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12764">
+            <rdf:Description rdf:about="#R_MAR12764">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/LSTNM2tev"/>
@@ -494038,13 +493026,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03732c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03732c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03732e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03732e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12765" sboTerm="SBO:0000176" id="MAR12765" name="glucuronidation of losartan-M6 to losartan-M4 in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12765" sboTerm="SBO:0000176" id="R_MAR12765" name="glucuronidation of losartan-M6 to losartan-M4 in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -494053,7 +493041,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12765">
+            <rdf:Description rdf:about="#R_MAR12765">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/LSTNM4hr"/>
@@ -494064,15 +493052,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03109r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03728r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03109r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03728r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03106r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03733r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03733r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12766" sboTerm="SBO:0000185" id="MAR12766" name="efflux of Losartan-M4 (glucuronide derivative) into hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12766" sboTerm="SBO:0000185" id="R_MAR12766" name="efflux of Losartan-M4 (glucuronide derivative) into hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -494081,7 +493069,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12766">
+            <rdf:Description rdf:about="#R_MAR12766">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/LSTNM4tev"/>
@@ -494092,13 +493080,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03733c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03733c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03733e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03733e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12767" sboTerm="SBO:0000176" id="MAR12767" name="oxidation of losartan to Losartan-M5 in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12767" sboTerm="SBO:0000176" id="R_MAR12767" name="oxidation of losartan to Losartan-M5 in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -494107,7 +493095,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12767">
+            <rdf:Description rdf:about="#R_MAR12767">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.13.-"/>
@@ -494119,15 +493107,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03729r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03729r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03734r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03734r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -494137,7 +493125,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12768" sboTerm="SBO:0000185" id="MAR12768" name="efflux of Losartan-M5 into hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12768" sboTerm="SBO:0000185" id="R_MAR12768" name="efflux of Losartan-M5 into hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -494146,7 +493134,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12768">
+            <rdf:Description rdf:about="#R_MAR12768">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/LSTNM5tev"/>
@@ -494157,13 +493145,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03734c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03734c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03734e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03734e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12769" sboTerm="SBO:0000185" id="MAR12769" name="uptake of Losartan-N2-glucuronide / Losartan-M7 into hepatocytes via diffusion" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12769" sboTerm="SBO:0000185" id="R_MAR12769" name="uptake of Losartan-N2-glucuronide / Losartan-M7 into hepatocytes via diffusion" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -494172,7 +493160,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12769">
+            <rdf:Description rdf:about="#R_MAR12769">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/LSTNM7TDhc"/>
@@ -494183,13 +493171,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03735e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03735e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03735c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03735c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12770" sboTerm="SBO:0000176" id="MAR12770" name="glucuronidation of losartan to losartan-M7/Losartan-N2-glucuronide in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12770" sboTerm="SBO:0000176" id="R_MAR12770" name="glucuronidation of losartan to losartan-M7/Losartan-N2-glucuronide in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -494198,7 +493186,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12770">
+            <rdf:Description rdf:about="#R_MAR12770">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.17"/>
@@ -494210,12 +493198,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03109r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03729r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03109r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03729r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03106r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03735r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03735r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -494234,7 +493222,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12771" sboTerm="SBO:0000185" id="MAR12771" name="uptake of Losartan-N2-glucuronide / Losartan-M7 into hepatocytes" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12771" sboTerm="SBO:0000185" id="R_MAR12771" name="uptake of Losartan-N2-glucuronide / Losartan-M7 into hepatocytes" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -494243,7 +493231,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12771">
+            <rdf:Description rdf:about="#R_MAR12771">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/LSTNM7thc"/>
@@ -494254,15 +493242,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01442c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03735e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01442c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03735e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01442e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03735c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01442e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03735c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12772" sboTerm="SBO:0000185" id="MAR12772" name="uptake of losartan via antiport into enterocytes" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12772" sboTerm="SBO:0000185" id="R_MAR12772" name="uptake of losartan via antiport into enterocytes" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -494271,7 +493259,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12772">
+            <rdf:Description rdf:about="#R_MAR12772">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/LSTNRATt"/>
@@ -494282,15 +493270,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01442c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03729e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01442c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03729e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01442e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03729c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01442e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03729c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12773" sboTerm="SBO:0000185" id="MAR12773" name="uptake of losartan via diffusion into enterocytes" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12773" sboTerm="SBO:0000185" id="R_MAR12773" name="uptake of losartan via diffusion into enterocytes" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -494299,7 +493287,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12773">
+            <rdf:Description rdf:about="#R_MAR12773">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/LSTNtd"/>
@@ -494310,13 +493298,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03729e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03729e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03729c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03729c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12774" sboTerm="SBO:0000176" id="MAR12774" name="reconversion of open acid form to lactone form of lovastatin" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12774" sboTerm="SBO:0000176" id="R_MAR12774" name="reconversion of open acid form to lactone form of lovastatin" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -494325,7 +493313,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12774">
+            <rdf:Description rdf:about="#R_MAR12774">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/LVACLAChep"/>
@@ -494336,16 +493324,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03737c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03737c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01334c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03736c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03736c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12776" sboTerm="SBO:0000185" id="MAR12776" name="efflux of lovastatin acid by P-gp from the enterocytes into lumen" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12776" sboTerm="SBO:0000185" id="R_MAR12776" name="efflux of lovastatin acid by P-gp from the enterocytes into lumen" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -494355,7 +493343,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12776">
+            <rdf:Description rdf:about="#R_MAR12776">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.6.3.44"/>
@@ -494367,21 +493355,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03737c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03737c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03737e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03737e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Mdr50"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12777" sboTerm="SBO:0000176" id="MAR12777" name="hydroxylation of lovastatin-hydroxyacid form to 6-beta-hydroxy-lovastatin-acid form" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12777" sboTerm="SBO:0000176" id="R_MAR12777" name="hydroxylation of lovastatin-hydroxyacid form to 6-beta-hydroxy-lovastatin-acid form" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -494390,7 +493378,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12777">
+            <rdf:Description rdf:about="#R_MAR12777">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.13.-"/>
@@ -494403,15 +493391,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03737r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03737r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03297r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03297r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -494421,7 +493409,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12778" sboTerm="SBO:0000176" id="MAR12778" name="hydroxylation of lovastatin-hydroxyacid form to 6-beta-hydroxy-lovastatin-acid form" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12778" sboTerm="SBO:0000176" id="R_MAR12778" name="hydroxylation of lovastatin-hydroxyacid form to 6-beta-hydroxy-lovastatin-acid form" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -494430,7 +493418,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12778">
+            <rdf:Description rdf:about="#R_MAR12778">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.13.-"/>
@@ -494443,15 +493431,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03737r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03737r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040r" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02554r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03302r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02554r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03302r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -494461,7 +493449,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12779" sboTerm="SBO:0000176" id="MAR12779" name="oxidation of lovastatin to 3-hydroxy-lovastatin in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12779" sboTerm="SBO:0000176" id="R_MAR12779" name="oxidation of lovastatin to 3-hydroxy-lovastatin in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -494470,7 +493458,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12779">
+            <rdf:Description rdf:about="#R_MAR12779">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.13.-"/>
@@ -494483,15 +493471,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03736r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03736r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03228r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03228r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -494501,7 +493489,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12780" sboTerm="SBO:0000176" id="MAR12780" name="oxidation of lovastatin to 6-beta-hydroxy-lovastatin in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12780" sboTerm="SBO:0000176" id="R_MAR12780" name="oxidation of lovastatin to 6-beta-hydroxy-lovastatin in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -494510,7 +493498,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12780">
+            <rdf:Description rdf:about="#R_MAR12780">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.13.-"/>
@@ -494523,15 +493511,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03736r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03736r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03296r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03296r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -494541,7 +493529,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12781" sboTerm="SBO:0000176" id="MAR12781" name="oxidation of lovastatin to 6-exomethylene-lovastatin in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12781" sboTerm="SBO:0000176" id="R_MAR12781" name="oxidation of lovastatin to 6-exomethylene-lovastatin in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -494550,7 +493538,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12781">
+            <rdf:Description rdf:about="#R_MAR12781">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.13.-"/>
@@ -494563,15 +493551,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03736r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03736r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040r" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02554r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03303r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02554r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03303r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -494581,7 +493569,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12782" sboTerm="SBO:0000185" id="MAR12782" name="efflux of lovastatin lactone by P-gp from the enterocytes into lumen" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12782" sboTerm="SBO:0000185" id="R_MAR12782" name="efflux of lovastatin lactone by P-gp from the enterocytes into lumen" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -494591,7 +493579,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12782">
+            <rdf:Description rdf:about="#R_MAR12782">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.6.3.44"/>
@@ -494603,21 +493591,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03736c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03736c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03736e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03736e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Mdr50"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12783" sboTerm="SBO:0000185" id="MAR12783" name="uptake of lovastatin by enterocytes" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12783" sboTerm="SBO:0000185" id="R_MAR12783" name="uptake of lovastatin by enterocytes" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -494626,7 +493614,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12783">
+            <rdf:Description rdf:about="#R_MAR12783">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/LVSTtu"/>
@@ -494637,13 +493625,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03736e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03736e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03736c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03736c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12784" sboTerm="SBO:0000185" id="MAR12784" name="efflux of midazolam-glucuronide into hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12784" sboTerm="SBO:0000185" id="R_MAR12784" name="efflux of midazolam-glucuronide into hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -494652,7 +493640,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12784">
+            <rdf:Description rdf:about="#R_MAR12784">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/MDZGLCtev"/>
@@ -494663,13 +493651,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03757c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03757c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03757e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03757e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12785" sboTerm="SBO:0000185" id="MAR12785" name="uptake of midazolam by enterocytes" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12785" sboTerm="SBO:0000185" id="R_MAR12785" name="uptake of midazolam by enterocytes" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -494678,7 +493666,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12785">
+            <rdf:Description rdf:about="#R_MAR12785">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/MDZtd"/>
@@ -494689,13 +493677,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03756e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03756e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03756c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03756c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12786" sboTerm="SBO:0000185" id="MAR12786" name="efflux of midazolam by P-gp from the enterocytes into lumen" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12786" sboTerm="SBO:0000185" id="R_MAR12786" name="efflux of midazolam by P-gp from the enterocytes into lumen" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -494704,7 +493692,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12786">
+            <rdf:Description rdf:about="#R_MAR12786">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.6.3.44"/>
@@ -494716,21 +493704,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03756c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03756c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03756e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03756e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Mdr50"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12787" sboTerm="SBO:0000185" id="MAR12787" name="efflux of acetaminophen-mercapturate-conjugate from enterocytes into portal blood" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12787" sboTerm="SBO:0000185" id="R_MAR12787" name="efflux of acetaminophen-mercapturate-conjugate from enterocytes into portal blood" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -494739,7 +493727,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12787">
+            <rdf:Description rdf:about="#R_MAR12787">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/MERACMPtep"/>
@@ -494750,21 +493738,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03759c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03759e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03759e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="MRP"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12788" sboTerm="SBO:0000185" id="MAR12788" name="uptake of acetaminophen-mercapturate-conjugate by the hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12788" sboTerm="SBO:0000185" id="R_MAR12788" name="uptake of acetaminophen-mercapturate-conjugate by the hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -494773,7 +493761,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12788">
+            <rdf:Description rdf:about="#R_MAR12788">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/MERACMPthc"/>
@@ -494784,21 +493772,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03759e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03759e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03759c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="MRP"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12789" sboTerm="SBO:0000185" id="MAR12789" name="excretion of Methyl-hydroxy-gliclazide into bile" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12789" sboTerm="SBO:0000185" id="R_MAR12789" name="excretion of Methyl-hydroxy-gliclazide into bile" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -494808,7 +493796,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12789">
+            <rdf:Description rdf:about="#R_MAR12789">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/MHGLZABCt"/>
@@ -494819,18 +493807,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03770c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03770c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03770e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03770e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12790" sboTerm="SBO:0000176" id="MAR12790" name="oxidation of gliclazide to methyl-hydroxy-gliclazide in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12790" sboTerm="SBO:0000176" id="R_MAR12790" name="oxidation of gliclazide to methyl-hydroxy-gliclazide in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -494839,7 +493827,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12790">
+            <rdf:Description rdf:about="#R_MAR12790">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.13.-"/>
@@ -494852,21 +493840,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03634r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03634r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03770r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03770r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Cyp18a1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12791" sboTerm="SBO:0000185" id="MAR12791" name="excretion of Methyl-hydroxy-gliclazide into hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12791" sboTerm="SBO:0000185" id="R_MAR12791" name="excretion of Methyl-hydroxy-gliclazide into hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -494875,7 +493863,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12791">
+            <rdf:Description rdf:about="#R_MAR12791">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/MHGLZtev"/>
@@ -494886,13 +493874,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03770c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03770c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03770e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03770e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12792" sboTerm="SBO:0000176" id="MAR12792" name="demethylation of rosuvastatin in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12792" sboTerm="SBO:0000176" id="R_MAR12792" name="demethylation of rosuvastatin in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -494901,7 +493889,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12792">
+            <rdf:Description rdf:about="#R_MAR12792">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.13.-"/>
@@ -494913,23 +493901,23 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02871r" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03918r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02871r" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03918r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02041r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02877r" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03780r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02877r" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03780r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Cyp18a1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12793" sboTerm="SBO:0000185" id="MAR12793" name="efflux of N-desmethyl-rosuvastatin into bile" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12793" sboTerm="SBO:0000185" id="R_MAR12793" name="efflux of N-desmethyl-rosuvastatin into bile" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -494938,7 +493926,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12793">
+            <rdf:Description rdf:about="#R_MAR12793">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/NDERSVteb"/>
@@ -494949,21 +493937,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03780c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03780c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03780e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03780e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="w"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12794" sboTerm="SBO:0000176" id="MAR12794" name="oxidation of acid metabolite of nifedipine in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12794" sboTerm="SBO:0000176" id="R_MAR12794" name="oxidation of acid metabolite of nifedipine in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -494972,7 +493960,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12794">
+            <rdf:Description rdf:about="#R_MAR12794">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.13.-"/>
@@ -494985,15 +493973,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03781r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03781r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03784r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03784r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -495002,7 +493990,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12795" sboTerm="SBO:0000185" id="MAR12795" name="exit of acid metabolite of nifedipine into portal vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12795" sboTerm="SBO:0000185" id="R_MAR12795" name="exit of acid metabolite of nifedipine into portal vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -495011,7 +493999,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12795">
+            <rdf:Description rdf:about="#R_MAR12795">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/NFDACtep"/>
@@ -495022,13 +494010,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03781c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03781c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03781e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03781e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12796" sboTerm="SBO:0000176" id="MAR12796" name="demethylation of nitropyridine metabolite of nifedipine in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12796" sboTerm="SBO:0000176" id="R_MAR12796" name="demethylation of nitropyridine metabolite of nifedipine in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -495037,7 +494025,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12796">
+            <rdf:Description rdf:about="#R_MAR12796">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/NFDDMEThr"/>
@@ -495048,15 +494036,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02871r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03783r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02871r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03783r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02877r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03781r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02877r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03781r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12797" sboTerm="SBO:0000176" id="MAR12797" name="lactonization of hydroxy metabolite of nifedipine in hepatocytes" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12797" sboTerm="SBO:0000176" id="R_MAR12797" name="lactonization of hydroxy metabolite of nifedipine in hepatocytes" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -495065,7 +494053,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12797">
+            <rdf:Description rdf:about="#R_MAR12797">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/NFDLAChc"/>
@@ -495076,15 +494064,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03784c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03784c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03782c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03782c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12798" sboTerm="SBO:0000185" id="MAR12798" name="exit of lactone form of nifedipine into portal vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12798" sboTerm="SBO:0000185" id="R_MAR12798" name="exit of lactone form of nifedipine into portal vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -495093,7 +494081,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12798">
+            <rdf:Description rdf:about="#R_MAR12798">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/NFDLACtep"/>
@@ -495104,13 +494092,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03782c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03782c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03782e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03782e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12799" sboTerm="SBO:0000185" id="MAR12799" name="exit of nitropyridine metabolite of nifedipine into portal vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12799" sboTerm="SBO:0000185" id="R_MAR12799" name="exit of nitropyridine metabolite of nifedipine into portal vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -495119,7 +494107,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12799">
+            <rdf:Description rdf:about="#R_MAR12799">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/NFDNPYtep"/>
@@ -495130,13 +494118,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03783c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03783c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03783e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03783e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12800" sboTerm="SBO:0000185" id="MAR12800" name="exit of hydroxy metabolite of nifedipine into portal vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12800" sboTerm="SBO:0000185" id="R_MAR12800" name="exit of hydroxy metabolite of nifedipine into portal vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -495145,7 +494133,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12800">
+            <rdf:Description rdf:about="#R_MAR12800">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/NFDOHtep"/>
@@ -495156,13 +494144,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03784c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03784c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03784e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03784e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12801" sboTerm="SBO:0000176" id="MAR12801" name="oxidation of nifepine to nitropyridine metabolite in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12801" sboTerm="SBO:0000176" id="R_MAR12801" name="oxidation of nifepine to nitropyridine metabolite in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -495171,7 +494159,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12801">
+            <rdf:Description rdf:about="#R_MAR12801">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/NFDOXDhc"/>
@@ -495183,16 +494171,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02587c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02587c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03783c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03783c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12802" sboTerm="SBO:0000176" id="MAR12802" name="conjugation of oxypurinol to oxypurinol-1-riboside" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12802" sboTerm="SBO:0000176" id="R_MAR12802" name="conjugation of oxypurinol to oxypurinol-1-riboside" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -495202,7 +494190,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12802">
+            <rdf:Description rdf:about="#R_MAR12802">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/OXYP1CONJ"/>
@@ -495213,16 +494201,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03801c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM04059c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03801c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04059c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03799c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03799c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12803" sboTerm="SBO:0000176" id="MAR12803" name="conjugation of oxypurinol to oxypurinol-7-riboside" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12803" sboTerm="SBO:0000176" id="R_MAR12803" name="conjugation of oxypurinol to oxypurinol-7-riboside" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -495232,7 +494220,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12803">
+            <rdf:Description rdf:about="#R_MAR12803">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/OXYP2CONJ"/>
@@ -495243,16 +494231,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03801c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM04059c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03801c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04059c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03800c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03800c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12804" sboTerm="SBO:0000185" id="MAR12804" name="release of oxypurinol-1-riboside into hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12804" sboTerm="SBO:0000185" id="R_MAR12804" name="release of oxypurinol-1-riboside into hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -495261,7 +494249,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12804">
+            <rdf:Description rdf:about="#R_MAR12804">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/OXYPR1tehv"/>
@@ -495272,13 +494260,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03799c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03799c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03799e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03799e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12805" sboTerm="SBO:0000185" id="MAR12805" name="release of oxypurinol-7-riboside into hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12805" sboTerm="SBO:0000185" id="R_MAR12805" name="release of oxypurinol-7-riboside into hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -495287,7 +494275,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12805">
+            <rdf:Description rdf:about="#R_MAR12805">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/OXYPR7tehv"/>
@@ -495298,13 +494286,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03800c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03800c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03800e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03800e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12806" sboTerm="SBO:0000185" id="MAR12806" name="uptake of oxypurinol by hepatocytes" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12806" sboTerm="SBO:0000185" id="R_MAR12806" name="uptake of oxypurinol by hepatocytes" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -495313,7 +494301,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12806">
+            <rdf:Description rdf:about="#R_MAR12806">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/OXYPthc"/>
@@ -495324,16 +494312,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03801e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03801e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03801c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03801c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG3168"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12807" sboTerm="SBO:0000185" id="MAR12807" name="release of oxypurinol into portal blood" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12807" sboTerm="SBO:0000185" id="R_MAR12807" name="release of oxypurinol into portal blood" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -495342,7 +494330,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12807">
+            <rdf:Description rdf:about="#R_MAR12807">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/OXYPtepv"/>
@@ -495353,15 +494341,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03801c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03801c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03801e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03801e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12808" sboTerm="SBO:0000176" id="MAR12808" name="beta oxidation (4 cycles) &amp; CYP oxidation of fluvastatin-CoA to des-isoproylpropionic-acid-fluvastatin-CoA in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12808" sboTerm="SBO:0000176" id="R_MAR12808" name="beta oxidation (4 cycles) &amp; CYP oxidation of fluvastatin-CoA to des-isoproylpropionic-acid-fluvastatin-CoA in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -495370,7 +494358,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12808">
+            <rdf:Description rdf:about="#R_MAR12808">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.3.6"/>
@@ -495386,20 +494374,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01597x" stoichiometry="4" constant="true"/>
-          <speciesReference species="MAM02040x" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02552x" stoichiometry="4" constant="true"/>
-          <speciesReference species="MAM02555x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630x" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03580x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597x" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM02040x" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02552x" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM02555x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630x" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03580x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01261x" stoichiometry="4" constant="true"/>
-          <speciesReference species="MAM02039x" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM02041x" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02553x" stoichiometry="4" constant="true"/>
-          <speciesReference species="MAM02554x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03893x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261x" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM02039x" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM02041x" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02553x" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM02554x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03893x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -495409,7 +494397,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12809" sboTerm="SBO:0000176" id="MAR12809" name="thioesterase/ hydrolase for release of des-isoproylpropionic-acid-fluvastatin in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12809" sboTerm="SBO:0000176" id="R_MAR12809" name="thioesterase/ hydrolase for release of des-isoproylpropionic-acid-fluvastatin in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -495418,7 +494406,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12809">
+            <rdf:Description rdf:about="#R_MAR12809">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PROFVShc"/>
@@ -495429,18 +494417,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02877c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03893c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02877c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03893c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02871c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03892c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02871c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03892c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12810" sboTerm="SBO:0000185" id="MAR12810" name="exit of des-isoproylpropionic-acid-fluvastatin into hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12810" sboTerm="SBO:0000185" id="R_MAR12810" name="exit of des-isoproylpropionic-acid-fluvastatin into hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -495449,7 +494437,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12810">
+            <rdf:Description rdf:about="#R_MAR12810">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PROFVStev"/>
@@ -495460,13 +494448,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03892c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03892c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03892e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03892e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12811" sboTerm="SBO:0000185" id="MAR12811" name="efflux of pitavastatin by BCRP from the enterocytes into lumen" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12811" sboTerm="SBO:0000185" id="R_MAR12811" name="efflux of pitavastatin by BCRP from the enterocytes into lumen" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -495475,7 +494463,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12811">
+            <rdf:Description rdf:about="#R_MAR12811">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PTVSTATPtu"/>
@@ -495486,21 +494474,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03911c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03911c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03911e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03911e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="w"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12812" sboTerm="SBO:0000176" id="MAR12812" name="glucuronidation of pitavastatin in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12812" sboTerm="SBO:0000176" id="R_MAR12812" name="glucuronidation of pitavastatin in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -495509,7 +494497,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12812">
+            <rdf:Description rdf:about="#R_MAR12812">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.17"/>
@@ -495521,12 +494509,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03109r" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03911r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03109r" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03911r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03106r" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03912r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106r" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03912r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -495543,7 +494531,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12813" sboTerm="SBO:0000176" id="MAR12813" name="spontaneous conversion of glucuronide to lactone form of pitavastatin in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12813" sboTerm="SBO:0000176" id="R_MAR12813" name="spontaneous conversion of glucuronide to lactone form of pitavastatin in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -495552,7 +494540,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12813">
+            <rdf:Description rdf:about="#R_MAR12813">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PTVSTLAChc"/>
@@ -495563,14 +494551,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03912r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03912r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01973r" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03913r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01973r" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03913r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12814" sboTerm="SBO:0000185" id="MAR12814" name="exit of pravastatin-lactone into hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12814" sboTerm="SBO:0000185" id="R_MAR12814" name="exit of pravastatin-lactone into hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -495579,7 +494567,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12814">
+            <rdf:Description rdf:about="#R_MAR12814">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PTVSTLACtev"/>
@@ -495590,13 +494578,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03913c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03913c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03913e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03913e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12815" sboTerm="SBO:0000176" id="MAR12815" name="oxidation of pitavastatin to pitavastatin-M13 in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12815" sboTerm="SBO:0000176" id="R_MAR12815" name="oxidation of pitavastatin to pitavastatin-M13 in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -495605,7 +494593,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12815">
+            <rdf:Description rdf:about="#R_MAR12815">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.13.-"/>
@@ -495618,21 +494606,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630r" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03911r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630r" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03911r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02041r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03914r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03914r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Cyp18a1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12816" sboTerm="SBO:0000185" id="MAR12816" name="efflux of pitavastatin-M3 into bile" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12816" sboTerm="SBO:0000185" id="R_MAR12816" name="efflux of pitavastatin-M3 into bile" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -495641,7 +494629,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12816">
+            <rdf:Description rdf:about="#R_MAR12816">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PTVSTM3eb"/>
@@ -495652,21 +494640,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03915c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03915c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03915e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03915e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="w"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12817" sboTerm="SBO:0000176" id="MAR12817" name="oxidation of pitavastatin to pitavastatin-M3 in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12817" sboTerm="SBO:0000176" id="R_MAR12817" name="oxidation of pitavastatin to pitavastatin-M3 in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -495675,7 +494663,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12817">
+            <rdf:Description rdf:about="#R_MAR12817">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.13.-"/>
@@ -495687,12 +494675,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02630r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03911r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03911r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040r" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03915r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03915r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -495701,7 +494689,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12819" sboTerm="SBO:0000185" id="MAR12819" name="efflux of pitavastatin from enterocytes into portal blood" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12819" sboTerm="SBO:0000185" id="R_MAR12819" name="efflux of pitavastatin from enterocytes into portal blood" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -495710,7 +494698,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12819">
+            <rdf:Description rdf:about="#R_MAR12819">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PTVSTtep"/>
@@ -495721,13 +494709,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03911c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03911c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03911e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03911e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12820" sboTerm="SBO:0000185" id="MAR12820" name="uptake of pitavastatin by enterocytes" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12820" sboTerm="SBO:0000185" id="R_MAR12820" name="uptake of pitavastatin by enterocytes" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -495736,7 +494724,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12820">
+            <rdf:Description rdf:about="#R_MAR12820">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PTVSTtu"/>
@@ -495747,12 +494735,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03911e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03911e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03911c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03911c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -495764,7 +494752,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12821" sboTerm="SBO:0000185" id="MAR12821" name="pravastatin efflux into lumen for excretion into feces" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12821" sboTerm="SBO:0000185" id="R_MAR12821" name="pravastatin efflux into lumen for excretion into feces" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -495773,7 +494761,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12821">
+            <rdf:Description rdf:about="#R_MAR12821">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PVSATPtu"/>
@@ -495786,15 +494774,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03916c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03916c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03916e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03916e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -495803,7 +494791,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12822" sboTerm="SBO:0000176" id="MAR12822" name="glucuronidation of pravastatin in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12822" sboTerm="SBO:0000176" id="R_MAR12822" name="glucuronidation of pravastatin in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -495812,7 +494800,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12822">
+            <rdf:Description rdf:about="#R_MAR12822">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PVSGLUChc"/>
@@ -495823,16 +494811,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03109r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03916r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03109r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03916r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03917r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03917r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12823" sboTerm="SBO:0000185" id="MAR12823" name="efflux of pravastatin glucuronide into bile" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12823" sboTerm="SBO:0000185" id="R_MAR12823" name="efflux of pravastatin glucuronide into bile" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -495841,7 +494829,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12823">
+            <rdf:Description rdf:about="#R_MAR12823">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PVSGLUCteb"/>
@@ -495852,15 +494840,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03917c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03917c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03917e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03917e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -495870,7 +494858,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12824" sboTerm="SBO:0000185" id="MAR12824" name="exit of pravastatin glucuronide into hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12824" sboTerm="SBO:0000185" id="R_MAR12824" name="exit of pravastatin glucuronide into hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -495879,7 +494867,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12824">
+            <rdf:Description rdf:about="#R_MAR12824">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PVSGLUCtev"/>
@@ -495890,13 +494878,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03917c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03917c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03917e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03917e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12825" sboTerm="SBO:0000185" id="MAR12825" name="uptake of pravastatin by enterocytes via proton coupled mechanism" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12825" sboTerm="SBO:0000185" id="R_MAR12825" name="uptake of pravastatin by enterocytes via proton coupled mechanism" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -495905,7 +494893,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12825">
+            <rdf:Description rdf:about="#R_MAR12825">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PVSHtu"/>
@@ -495916,15 +494904,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03916e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03916e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03916c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03916c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12826" sboTerm="SBO:0000185" id="MAR12826" name="uptake of pravastatin by enterocytes" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12826" sboTerm="SBO:0000185" id="R_MAR12826" name="uptake of pravastatin by enterocytes" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -495934,7 +494922,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12826">
+            <rdf:Description rdf:about="#R_MAR12826">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PVSOATPtu"/>
@@ -495945,12 +494933,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03916e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03916e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03916c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03916c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -495962,7 +494950,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12827" sboTerm="SBO:0000185" id="MAR12827" name="pravastatin exit into portal blood" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12827" sboTerm="SBO:0000185" id="R_MAR12827" name="pravastatin exit into portal blood" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -495971,7 +494959,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12827">
+            <rdf:Description rdf:about="#R_MAR12827">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PVStep"/>
@@ -495982,13 +494970,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03916c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03916c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03916e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03916e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12828" sboTerm="SBO:0000185" id="MAR12828" name="efflux of rosuvastatin by BCRP from the enterocytes into lumen" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12828" sboTerm="SBO:0000185" id="R_MAR12828" name="efflux of rosuvastatin by BCRP from the enterocytes into lumen" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -495997,7 +494985,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12828">
+            <rdf:Description rdf:about="#R_MAR12828">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/RSVATPtu"/>
@@ -496008,21 +494996,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03918c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03918c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03918e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03918e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="w"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12829" sboTerm="SBO:0000176" id="MAR12829" name="glucuronidation of rosuvastatin in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12829" sboTerm="SBO:0000176" id="R_MAR12829" name="glucuronidation of rosuvastatin in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -496031,7 +495019,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12829">
+            <rdf:Description rdf:about="#R_MAR12829">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/RSVGLUChc"/>
@@ -496042,15 +495030,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03109r" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03918r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03109r" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03918r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03106r" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03919r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106r" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03919r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12830" sboTerm="SBO:0000176" id="MAR12830" name="spontaneous conversion to rosuvastatin-5S-lactone in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12830" sboTerm="SBO:0000176" id="R_MAR12830" name="spontaneous conversion to rosuvastatin-5S-lactone in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -496059,7 +495047,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12830">
+            <rdf:Description rdf:about="#R_MAR12830">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/RSVLAChv"/>
@@ -496070,14 +495058,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03919r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03919r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01973r" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03920r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01973r" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03920r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12831" sboTerm="SBO:0000185" id="MAR12831" name="efflux of rosuvastatin-5S-lactone into bile" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12831" sboTerm="SBO:0000185" id="R_MAR12831" name="efflux of rosuvastatin-5S-lactone into bile" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -496086,7 +495074,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12831">
+            <rdf:Description rdf:about="#R_MAR12831">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/RSVLACteb"/>
@@ -496097,21 +495085,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03920c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03920c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03920e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03920e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="w"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12833" sboTerm="SBO:0000176" id="MAR12833" name="beta-glucuronidase of rosuvastatin-glucuronide in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12833" sboTerm="SBO:0000176" id="R_MAR12833" name="beta-glucuronidase of rosuvastatin-glucuronide in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -496120,7 +495108,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12833">
+            <rdf:Description rdf:about="#R_MAR12833">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/RSVhc"/>
@@ -496131,16 +495119,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040r" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03919r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03919r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01973r" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02039r" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03918r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01973r" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03918r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12834" sboTerm="SBO:0000185" id="MAR12834" name="exit of rosuvastatin into hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12834" sboTerm="SBO:0000185" id="R_MAR12834" name="exit of rosuvastatin into hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -496149,7 +495137,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12834">
+            <rdf:Description rdf:about="#R_MAR12834">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/RSVtev"/>
@@ -496160,13 +495148,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03918c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03918c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03918e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03918e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12835" sboTerm="SBO:0000185" id="MAR12835" name="uptake of rosuvastatin by enterocytes" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12835" sboTerm="SBO:0000185" id="R_MAR12835" name="uptake of rosuvastatin by enterocytes" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -496175,7 +495163,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12835">
+            <rdf:Description rdf:about="#R_MAR12835">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/RSVtu"/>
@@ -496186,12 +495174,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03918e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03918e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03918c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03918c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -496203,7 +495191,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12836" sboTerm="SBO:0000176" id="MAR12836" name="sulphation of 3-methoxy-acetaminophen in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12836" sboTerm="SBO:0000176" id="R_MAR12836" name="sulphation of 3-methoxy-acetaminophen in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -496212,7 +495200,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12836">
+            <rdf:Description rdf:about="#R_MAR12836">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/S3MEACMPhc"/>
@@ -496223,17 +495211,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02682c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02871c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03244c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02682c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02871c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03244c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02681c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02877c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03921c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02681c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02877c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03921c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12837" sboTerm="SBO:0000185" id="MAR12837" name="efflux of sulphate-conjugate-3-methoxy-acetaminophen into hepatic vein" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12837" sboTerm="SBO:0000185" id="R_MAR12837" name="efflux of sulphate-conjugate-3-methoxy-acetaminophen into hepatic vein" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -496242,7 +495230,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12837">
+            <rdf:Description rdf:about="#R_MAR12837">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/S3MEACMPtev"/>
@@ -496253,18 +495241,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03921c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03921c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03921e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03921e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12838" sboTerm="SBO:0000185" id="MAR12838" name="efflux of simvastatin dihydroxy acid form into bile" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12838" sboTerm="SBO:0000185" id="R_MAR12838" name="efflux of simvastatin dihydroxy acid form into bile" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -496274,7 +495262,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12838">
+            <rdf:Description rdf:about="#R_MAR12838">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/SMVACIDATPteb"/>
@@ -496285,21 +495273,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03935c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03935c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03935e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03935e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Mdr50"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12839" sboTerm="SBO:0000176" id="MAR12839" name="beta-glucuronidation of simvastatin-acyl-glucuronide to simvastatin dihydroxy acid form" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12839" sboTerm="SBO:0000176" id="R_MAR12839" name="beta-glucuronidation of simvastatin-acyl-glucuronide to simvastatin dihydroxy acid form" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -496308,7 +495296,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12839">
+            <rdf:Description rdf:about="#R_MAR12839">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.2.1.31"/>
@@ -496320,19 +495308,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03932r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03932r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01973r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03935r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01973r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03935r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG15117"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12840" sboTerm="SBO:0000185" id="MAR12840" name="efflux of simvastatin dihydroxy acid form into hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12840" sboTerm="SBO:0000185" id="R_MAR12840" name="efflux of simvastatin dihydroxy acid form into hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -496341,7 +495329,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12840">
+            <rdf:Description rdf:about="#R_MAR12840">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/SMVACIDtev"/>
@@ -496352,13 +495340,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03935c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03935c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03935e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03935e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12841" sboTerm="SBO:0000185" id="MAR12841" name="efflux of simvastatin by P-gp from the enterocytes into lumen" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12841" sboTerm="SBO:0000185" id="R_MAR12841" name="efflux of simvastatin by P-gp from the enterocytes into lumen" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -496367,7 +495355,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12841">
+            <rdf:Description rdf:about="#R_MAR12841">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.6.3.44"/>
@@ -496379,21 +495367,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03934c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03934c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03934e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03934e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Mdr50"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12842" sboTerm="SBO:0000176" id="MAR12842" name="spontaneous conversion of glucuronide to lactone form of simvastatin" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12842" sboTerm="SBO:0000176" id="R_MAR12842" name="spontaneous conversion of glucuronide to lactone form of simvastatin" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -496402,7 +495390,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12842">
+            <rdf:Description rdf:about="#R_MAR12842">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/SMVGLUCLAChep"/>
@@ -496413,14 +495401,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03932r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03932r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01973r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03934r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01973r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03934r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12843" sboTerm="SBO:0000176" id="MAR12843" name="glucuronidation of the open acid form of simvastatin" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12843" sboTerm="SBO:0000176" id="R_MAR12843" name="glucuronidation of the open acid form of simvastatin" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -496429,7 +495417,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12843">
+            <rdf:Description rdf:about="#R_MAR12843">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.17"/>
@@ -496441,12 +495429,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03109r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03935r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03109r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03935r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03106r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03932r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03932r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -496462,7 +495450,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12845" sboTerm="SBO:0000176" id="MAR12845" name="conversion of open acid form to lactone form of simvastatin" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12845" sboTerm="SBO:0000176" id="R_MAR12845" name="conversion of open acid form to lactone form of simvastatin" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -496471,7 +495459,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12845">
+            <rdf:Description rdf:about="#R_MAR12845">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/SMVLAChep"/>
@@ -496482,16 +495470,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03935c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03935c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01334c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03934c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03934c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12846" sboTerm="SBO:0000185" id="MAR12846" name="uptake of simvastatin by enterocytes" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12846" sboTerm="SBO:0000185" id="R_MAR12846" name="uptake of simvastatin by enterocytes" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -496500,7 +495488,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12846">
+            <rdf:Description rdf:about="#R_MAR12846">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/SMVtv"/>
@@ -496511,13 +495499,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03934e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03934e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03934c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03934c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12847" sboTerm="SBO:0000185" id="MAR12847" name="uptake of simvastatin by hepatocytes" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12847" sboTerm="SBO:0000185" id="R_MAR12847" name="uptake of simvastatin by hepatocytes" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -496527,7 +495515,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12847">
+            <rdf:Description rdf:about="#R_MAR12847">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/SMVthep"/>
@@ -496538,12 +495526,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03934e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03934e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03934c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03934c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -496555,7 +495543,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12848" sboTerm="SBO:0000176" id="MAR12848" name="sulphation of thiomethyl-acetaminophen conjugate in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12848" sboTerm="SBO:0000176" id="R_MAR12848" name="sulphation of thiomethyl-acetaminophen conjugate in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -496564,7 +495552,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12848">
+            <rdf:Description rdf:about="#R_MAR12848">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/STACMPhc"/>
@@ -496575,16 +495563,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02682c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03999c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02682c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03999c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02681c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03952c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02681c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03952c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12849" sboTerm="SBO:0000185" id="MAR12849" name="efflux of sulphate-thiomethyl-acetaminophen conjugate into hepatic vein" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12849" sboTerm="SBO:0000185" id="R_MAR12849" name="efflux of sulphate-thiomethyl-acetaminophen conjugate into hepatic vein" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -496593,7 +495581,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12849">
+            <rdf:Description rdf:about="#R_MAR12849">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/STACMPtev"/>
@@ -496604,18 +495592,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03952c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03952c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03952e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03952e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12850" sboTerm="SBO:0000185" id="MAR12850" name="efflux of acetaminophen-sulphate into hepatic vein" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12850" sboTerm="SBO:0000185" id="R_MAR12850" name="efflux of acetaminophen-sulphate into hepatic vein" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -496624,7 +495612,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12850">
+            <rdf:Description rdf:about="#R_MAR12850">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/SULPACMPtev"/>
@@ -496635,15 +495623,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03958c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03958c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03958e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03958e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -496653,7 +495641,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12851" sboTerm="SBO:0000185" id="MAR12851" name="uptake of tacrolimus by enterocytes" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12851" sboTerm="SBO:0000185" id="R_MAR12851" name="uptake of tacrolimus by enterocytes" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -496662,7 +495650,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12851">
+            <rdf:Description rdf:about="#R_MAR12851">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/TACRDtsc"/>
@@ -496673,13 +495661,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03959e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03959e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03959c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03959c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12852" sboTerm="SBO:0000185" id="MAR12852" name="efflux of tacrolimus into intestinal lumen by P-gp" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12852" sboTerm="SBO:0000185" id="R_MAR12852" name="efflux of tacrolimus into intestinal lumen by P-gp" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -496688,7 +495676,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12852">
+            <rdf:Description rdf:about="#R_MAR12852">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/TACRtu"/>
@@ -496699,21 +495687,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03959c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03959c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03959e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03959e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Mdr50"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12853" sboTerm="SBO:0000185" id="MAR12853" name="release of taurine conjugate of S-ibuprofen into hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12853" sboTerm="SBO:0000185" id="R_MAR12853" name="release of taurine conjugate of S-ibuprofen into hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -496722,7 +495710,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12853">
+            <rdf:Description rdf:about="#R_MAR12853">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/TAURIBUP_Sthv"/>
@@ -496733,13 +495721,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03961c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03961c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03961e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03961e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12854" sboTerm="SBO:0000176" id="MAR12854" name="threo isomer formation of fluvastatin" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12854" sboTerm="SBO:0000176" id="R_MAR12854" name="threo isomer formation of fluvastatin" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -496748,7 +495736,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12854">
+            <rdf:Description rdf:about="#R_MAR12854">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/THRFVShc"/>
@@ -496759,13 +495747,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03579c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03579c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03985c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03985c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12855" sboTerm="SBO:0000185" id="MAR12855" name="exit of threo-isomer of fluvastain into hepatic vein for excretion in urine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12855" sboTerm="SBO:0000185" id="R_MAR12855" name="exit of threo-isomer of fluvastain into hepatic vein for excretion in urine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -496774,7 +495762,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12855">
+            <rdf:Description rdf:about="#R_MAR12855">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/THRFVStev"/>
@@ -496785,13 +495773,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03985c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03985c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03985e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03985e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12856" sboTerm="SBO:0000176" id="MAR12856" name="formation of thiomethyl-sulphoxide-conjugate of acetaminophen in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12856" sboTerm="SBO:0000176" id="R_MAR12856" name="formation of thiomethyl-sulphoxide-conjugate of acetaminophen in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -496800,7 +495788,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12856">
+            <rdf:Description rdf:about="#R_MAR12856">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/THSACMPhr"/>
@@ -496811,18 +495799,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03999r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03999r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03995r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03995r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12857" sboTerm="SBO:0000176" id="MAR12857" name="spontaneous conversion of glucuronide to trans-lactone-fluvastatin in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12857" sboTerm="SBO:0000176" id="R_MAR12857" name="spontaneous conversion of glucuronide to trans-lactone-fluvastatin in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -496831,7 +495819,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12857">
+            <rdf:Description rdf:about="#R_MAR12857">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/TLACFVShc"/>
@@ -496842,14 +495830,14 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03581r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03581r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01973r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03998r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01973r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03998r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12858" sboTerm="SBO:0000185" id="MAR12858" name="exit of trans-lactone-fluvastatin into hepatic vein for excretion in urine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12858" sboTerm="SBO:0000185" id="R_MAR12858" name="exit of trans-lactone-fluvastatin into hepatic vein for excretion in urine" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -496858,7 +495846,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12858">
+            <rdf:Description rdf:about="#R_MAR12858">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/TLACFVStev"/>
@@ -496869,13 +495857,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03998c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03998c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03998e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03998e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12859" sboTerm="SBO:0000185" id="MAR12859" name="efflux of Torasemide-M1 into hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12859" sboTerm="SBO:0000185" id="R_MAR12859" name="efflux of Torasemide-M1 into hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -496885,7 +495873,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12859">
+            <rdf:Description rdf:about="#R_MAR12859">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/TMDM1OATt"/>
@@ -496896,15 +495884,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01442e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM04001c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01442e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04001c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01442c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM04001e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01442c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04001e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12860" sboTerm="SBO:0000176" id="MAR12860" name="tolyl methylhydroxylation of torasemide in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12860" sboTerm="SBO:0000176" id="R_MAR12860" name="tolyl methylhydroxylation of torasemide in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -496913,7 +495901,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12860">
+            <rdf:Description rdf:about="#R_MAR12860">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.13.-"/>
@@ -496925,21 +495913,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM04000r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04000r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM04001r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04001r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Cyp18a1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12861" sboTerm="SBO:0000185" id="MAR12861" name="efflux of Torasemide-M3 into hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12861" sboTerm="SBO:0000185" id="R_MAR12861" name="efflux of Torasemide-M3 into hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -496949,7 +495937,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12861">
+            <rdf:Description rdf:about="#R_MAR12861">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/TMDM3OATt"/>
@@ -496960,15 +495948,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01442e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM04002c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01442e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04002c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01442c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM04002e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01442c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04002e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12862" sboTerm="SBO:0000176" id="MAR12862" name="hydroxylation of torasemide to torasemide-M3 in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12862" sboTerm="SBO:0000176" id="R_MAR12862" name="hydroxylation of torasemide to torasemide-M3 in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -496977,7 +495965,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12862">
+            <rdf:Description rdf:about="#R_MAR12862">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/TMDM3hr"/>
@@ -496988,18 +495976,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM04000r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04000r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM04002r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04002r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12863" sboTerm="SBO:0000185" id="MAR12863" name="efflux of Torasemide-M5 into hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12863" sboTerm="SBO:0000185" id="R_MAR12863" name="efflux of Torasemide-M5 into hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -497009,7 +495997,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12863">
+            <rdf:Description rdf:about="#R_MAR12863">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/TMDM5OATt"/>
@@ -497020,15 +496008,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01442e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM04003c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01442e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04003c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01442c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM04003e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01442c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04003e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12864" sboTerm="SBO:0000176" id="MAR12864" name="oxidation of torasemide-M1 to M5 in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12864" sboTerm="SBO:0000176" id="R_MAR12864" name="oxidation of torasemide-M1 to M5 in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -497037,7 +496025,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12864">
+            <rdf:Description rdf:about="#R_MAR12864">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.13.-"/>
@@ -497049,19 +496037,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02630r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM04001r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04001r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM04003r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04003r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Cyp18a1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12865" sboTerm="SBO:0000185" id="MAR12865" name="uptake of torasemide into enterocytes via antiport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12865" sboTerm="SBO:0000185" id="R_MAR12865" name="uptake of torasemide into enterocytes via antiport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -497070,7 +496058,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12865">
+            <rdf:Description rdf:about="#R_MAR12865">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/TMDOATPtsc"/>
@@ -497081,15 +496069,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02046c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM04000e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04000e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02046e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM04000c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02046e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04000c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12866" sboTerm="SBO:0000185" id="MAR12866" name="efflux of Torasemide into hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12866" sboTerm="SBO:0000185" id="R_MAR12866" name="efflux of Torasemide into hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -497099,7 +496087,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12866">
+            <rdf:Description rdf:about="#R_MAR12866">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/TMDOATtev"/>
@@ -497110,15 +496098,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01442e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM04000c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01442e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04000c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01442c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM04000e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01442c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04000e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12867" sboTerm="SBO:0000185" id="MAR12867" name="uptake of torasemide into hepatocytes via OAT1" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12867" sboTerm="SBO:0000185" id="R_MAR12867" name="uptake of torasemide into hepatocytes via OAT1" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -497127,7 +496115,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12867">
+            <rdf:Description rdf:about="#R_MAR12867">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/TMDOATthc"/>
@@ -497138,20 +496126,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01306c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM04000e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01306c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04000e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01306e" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02519c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM04000c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01306e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04000c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG6126"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12868" sboTerm="SBO:0000185" id="MAR12868" name="uptake of torasemide into enterocytes via diffusion" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12868" sboTerm="SBO:0000185" id="R_MAR12868" name="uptake of torasemide into enterocytes via diffusion" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -497159,7 +496147,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12868">
+            <rdf:Description rdf:about="#R_MAR12868">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/TMDtd"/>
@@ -497170,13 +496158,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM04000e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04000e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM04000c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04000c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12869" sboTerm="SBO:0000176" id="MAR12869" name="formation of triol metabolite of pravastatin in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12869" sboTerm="SBO:0000176" id="R_MAR12869" name="formation of triol metabolite of pravastatin in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -497185,7 +496173,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12869">
+            <rdf:Description rdf:about="#R_MAR12869">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.13.-"/>
@@ -497197,15 +496185,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039r" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02555r" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02630r" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03916r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02555r" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02630r" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03916r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02041r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554r" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM04007r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554r" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM04007r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -497214,7 +496202,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12870" sboTerm="SBO:0000185" id="MAR12870" name="efflux of triol metabolite of pravastatin into bile" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12870" sboTerm="SBO:0000185" id="R_MAR12870" name="efflux of triol metabolite of pravastatin into bile" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -497223,7 +496211,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12870">
+            <rdf:Description rdf:about="#R_MAR12870">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/TRIPVSteb"/>
@@ -497234,15 +496222,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM04007c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04007c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM04007e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04007e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -497252,7 +496240,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR12871" sboTerm="SBO:0000185" id="MAR12871" name="exit of triol metabolite of pravastatin into hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12871" sboTerm="SBO:0000185" id="R_MAR12871" name="exit of triol metabolite of pravastatin into hepatic vein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -497261,7 +496249,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12871">
+            <rdf:Description rdf:about="#R_MAR12871">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/TRIPVStev"/>
@@ -497272,13 +496260,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM04007c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04007c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM04007e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04007e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12872" sboTerm="SBO:0000185" id="MAR12872" name="efflux of thiomethyl-sulphoxide-acetaminophen-glucuronide into hepatic vein" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12872" sboTerm="SBO:0000185" id="R_MAR12872" name="efflux of thiomethyl-sulphoxide-acetaminophen-glucuronide into hepatic vein" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -497287,7 +496275,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12872">
+            <rdf:Description rdf:about="#R_MAR12872">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/TSACGLUCtev"/>
@@ -497298,18 +496286,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM04038c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04038c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM04038e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04038e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12873" sboTerm="SBO:0000176" id="MAR12873" name="glucuronidation of thiomethyl-sulphoxide-conjugate of acetaminophen in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12873" sboTerm="SBO:0000176" id="R_MAR12873" name="glucuronidation of thiomethyl-sulphoxide-conjugate of acetaminophen in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -497318,7 +496306,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12873">
+            <rdf:Description rdf:about="#R_MAR12873">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/TSACMGLUChr"/>
@@ -497329,16 +496317,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03109r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03995r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03109r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03995r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03106r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM04038r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04038r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12874" sboTerm="SBO:0000176" id="MAR12874" name="sulphation of thiomethyl-sulphoxide-conjugate of acetaminophen in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12874" sboTerm="SBO:0000176" id="R_MAR12874" name="sulphation of thiomethyl-sulphoxide-conjugate of acetaminophen in hepatocytes" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -497347,7 +496335,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12874">
+            <rdf:Description rdf:about="#R_MAR12874">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/TSACMSULhc"/>
@@ -497358,16 +496346,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02682c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03995c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02682c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03995c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02681c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM04039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02681c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04039c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12875" sboTerm="SBO:0000185" id="MAR12875" name="efflux of thiomethyl-sulphoxide-acetaminophen-sulphate into hepatic vein" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12875" sboTerm="SBO:0000185" id="R_MAR12875" name="efflux of thiomethyl-sulphoxide-acetaminophen-sulphate into hepatic vein" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -497376,7 +496364,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12875">
+            <rdf:Description rdf:about="#R_MAR12875">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/TSACMSULtev"/>
@@ -497387,18 +496375,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM04039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04039c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM04039e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04039e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12876" sboTerm="SBO:0000185" id="MAR12876" name="12HTACRitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12876" sboTerm="SBO:0000185" id="R_MAR12876" name="12HTACRitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -497406,7 +496394,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12876">
+            <rdf:Description rdf:about="#R_MAR12876">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/12HTACRitr"/>
@@ -497417,13 +496405,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01817r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01817r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01817c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01817c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12877" sboTerm="SBO:0000185" id="MAR12877" name="13HTACRitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12877" sboTerm="SBO:0000185" id="R_MAR12877" name="13HTACRitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -497431,7 +496419,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12877">
+            <rdf:Description rdf:about="#R_MAR12877">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/13HTACRitr"/>
@@ -497442,13 +496430,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01818r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01818r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01818c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01818c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12878" sboTerm="SBO:0000185" id="MAR12878" name="14HMDZitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12878" sboTerm="SBO:0000185" id="R_MAR12878" name="14HMDZitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -497456,7 +496444,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12878">
+            <rdf:Description rdf:about="#R_MAR12878">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/14HMDZitr"/>
@@ -497467,13 +496455,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01888r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01888r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01888c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01888c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12879" sboTerm="SBO:0000185" id="MAR12879" name="1513TACRitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12879" sboTerm="SBO:0000185" id="R_MAR12879" name="1513TACRitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -497481,7 +496469,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12879">
+            <rdf:Description rdf:about="#R_MAR12879">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/1513TACRitr"/>
@@ -497492,13 +496480,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01889r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01889r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01889c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01889c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12880" sboTerm="SBO:0000185" id="MAR12880" name="1531TACRitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12880" sboTerm="SBO:0000185" id="R_MAR12880" name="1531TACRitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -497506,7 +496494,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12880">
+            <rdf:Description rdf:about="#R_MAR12880">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/1531TACRitr"/>
@@ -497517,13 +496505,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01890r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01890r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01890c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01890c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12881" sboTerm="SBO:0000185" id="MAR12881" name="1HIBUP_Sitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12881" sboTerm="SBO:0000185" id="R_MAR12881" name="1HIBUP_Sitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -497531,7 +496519,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12881">
+            <rdf:Description rdf:about="#R_MAR12881">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/1HIBUP_Sitr"/>
@@ -497542,13 +496530,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01894r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01894r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01894c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01894c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12882" sboTerm="SBO:0000185" id="MAR12882" name="1HIBUPGLUitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12882" sboTerm="SBO:0000185" id="R_MAR12882" name="1HIBUPGLUitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -497556,7 +496544,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12882">
+            <rdf:Description rdf:about="#R_MAR12882">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/1HIBUPGLUitr"/>
@@ -497567,13 +496555,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01901r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01901r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01901c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01901c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12883" sboTerm="SBO:0000185" id="MAR12883" name="1HMDGLUCitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12883" sboTerm="SBO:0000185" id="R_MAR12883" name="1HMDGLUCitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -497581,7 +496569,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12883">
+            <rdf:Description rdf:about="#R_MAR12883">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/1HMDGLUCitr"/>
@@ -497592,13 +496580,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01902r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01902r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01902c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01902c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12884" sboTerm="SBO:0000185" id="MAR12884" name="2HATVACIDGLUCitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12884" sboTerm="SBO:0000185" id="R_MAR12884" name="2HATVACIDGLUCitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -497606,7 +496594,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12884">
+            <rdf:Description rdf:about="#R_MAR12884">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/2HATVACIDGLUCitr"/>
@@ -497617,13 +496605,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03178r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03178r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03178c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03178c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12885" sboTerm="SBO:0000185" id="MAR12885" name="2HATVLACGLUCitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12885" sboTerm="SBO:0000185" id="R_MAR12885" name="2HATVLACGLUCitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -497631,7 +496619,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12885">
+            <rdf:Description rdf:about="#R_MAR12885">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/2HATVLACGLUCitr"/>
@@ -497642,13 +496630,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03180r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03180r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03180c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03180c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12886" sboTerm="SBO:0000185" id="MAR12886" name="2HIBUP_Ritr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12886" sboTerm="SBO:0000185" id="R_MAR12886" name="2HIBUP_Ritr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -497656,7 +496644,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12886">
+            <rdf:Description rdf:about="#R_MAR12886">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/2HIBUP_Ritr"/>
@@ -497667,13 +496655,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03183r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03183r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03183c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03183c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12887" sboTerm="SBO:0000185" id="MAR12887" name="2HIBUP_Sitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12887" sboTerm="SBO:0000185" id="R_MAR12887" name="2HIBUP_Sitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -497681,7 +496669,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12887">
+            <rdf:Description rdf:about="#R_MAR12887">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/2HIBUP_Sitr"/>
@@ -497692,13 +496680,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03184r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03184r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03184c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03184c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12888" sboTerm="SBO:0000185" id="MAR12888" name="2HIBUPGLUC_Sitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12888" sboTerm="SBO:0000185" id="R_MAR12888" name="2HIBUPGLUC_Sitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -497706,7 +496694,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12888">
+            <rdf:Description rdf:about="#R_MAR12888">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/2HIBUPGLUC_Sitr"/>
@@ -497717,13 +496705,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03185r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03185r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03185c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03185c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12889" sboTerm="SBO:0000185" id="MAR12889" name="35DHPVSitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12889" sboTerm="SBO:0000185" id="R_MAR12889" name="35DHPVSitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -497731,7 +496719,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12889">
+            <rdf:Description rdf:about="#R_MAR12889">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/35DHPVSitr"/>
@@ -497742,13 +496730,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03198r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03198r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03198c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03198c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12890" sboTerm="SBO:0000185" id="MAR12890" name="35DSMVitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12890" sboTerm="SBO:0000185" id="R_MAR12890" name="35DSMVitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -497756,7 +496744,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12890">
+            <rdf:Description rdf:about="#R_MAR12890">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/35DSMVitr"/>
@@ -497767,13 +496755,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03199r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03199r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03199c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03199c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12891" sboTerm="SBO:0000185" id="MAR12891" name="3HIBUP_Ritr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12891" sboTerm="SBO:0000185" id="R_MAR12891" name="3HIBUP_Ritr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -497781,7 +496769,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12891">
+            <rdf:Description rdf:about="#R_MAR12891">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/3HIBUP_Ritr"/>
@@ -497792,13 +496780,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03223r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03223r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03223c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03223c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12892" sboTerm="SBO:0000185" id="MAR12892" name="3HIBUPGLUC_Sitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12892" sboTerm="SBO:0000185" id="R_MAR12892" name="3HIBUPGLUC_Sitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -497806,7 +496794,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12892">
+            <rdf:Description rdf:about="#R_MAR12892">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/3HIBUPGLUC_Sitr"/>
@@ -497817,13 +496805,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03225r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03225r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03225c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03225c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12893" sboTerm="SBO:0000185" id="MAR12893" name="3HLVSTitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12893" sboTerm="SBO:0000185" id="R_MAR12893" name="3HLVSTitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -497831,7 +496819,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12893">
+            <rdf:Description rdf:about="#R_MAR12893">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/3HLVSTitr"/>
@@ -497842,13 +496830,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03228r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03228r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03228c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03228c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12894" sboTerm="SBO:0000185" id="MAR12894" name="3HPVSitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12894" sboTerm="SBO:0000185" id="R_MAR12894" name="3HPVSitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -497856,7 +496844,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12894">
+            <rdf:Description rdf:about="#R_MAR12894">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/3HPVSitr"/>
@@ -497867,13 +496855,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03235r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03235r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03235c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03235c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12895" sboTerm="SBO:0000185" id="MAR12895" name="3HPVSCOAitm" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12895" sboTerm="SBO:0000185" id="R_MAR12895" name="3HPVSCOAitm" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -497881,7 +496869,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12895">
+            <rdf:Description rdf:about="#R_MAR12895">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/3HPVSCOAitm"/>
@@ -497892,13 +496880,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03236m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03236m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03236c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03236c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12896" sboTerm="SBO:0000185" id="MAR12896" name="3HPVSCOAitx" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12896" sboTerm="SBO:0000185" id="R_MAR12896" name="3HPVSCOAitx" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -497906,7 +496894,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12896">
+            <rdf:Description rdf:about="#R_MAR12896">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/3HPVSCOAitx"/>
@@ -497917,13 +496905,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03236c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03236c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03236x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03236x" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12897" sboTerm="SBO:0000185" id="MAR12897" name="3HPVSTETCOAitm" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12897" sboTerm="SBO:0000185" id="R_MAR12897" name="3HPVSTETCOAitm" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -497931,7 +496919,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12897">
+            <rdf:Description rdf:about="#R_MAR12897">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/3HPVSTETCOAitm"/>
@@ -497942,13 +496930,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03238m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03238m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03238c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03238c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12898" sboTerm="SBO:0000185" id="MAR12898" name="3HPVSTETCOAitx" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12898" sboTerm="SBO:0000185" id="R_MAR12898" name="3HPVSTETCOAitx" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -497956,7 +496944,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12898">
+            <rdf:Description rdf:about="#R_MAR12898">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/3HPVSTETCOAitx"/>
@@ -497967,13 +496955,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03238x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03238x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03238c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03238c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12899" sboTerm="SBO:0000185" id="MAR12899" name="3HSMVitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12899" sboTerm="SBO:0000185" id="R_MAR12899" name="3HSMVitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -497981,7 +496969,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12899">
+            <rdf:Description rdf:about="#R_MAR12899">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/3HSMVitr"/>
@@ -497992,13 +496980,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03239r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03239r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03239c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03239c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12900" sboTerm="SBO:0000185" id="MAR12900" name="3ISPVSitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12900" sboTerm="SBO:0000185" id="R_MAR12900" name="3ISPVSitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -498006,7 +496994,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12900">
+            <rdf:Description rdf:about="#R_MAR12900">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/3ISPVSitr"/>
@@ -498017,13 +497005,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03241r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03241r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03241c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03241c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12901" sboTerm="SBO:0000185" id="MAR12901" name="3MEACMPitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12901" sboTerm="SBO:0000185" id="R_MAR12901" name="3MEACMPitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -498031,7 +497019,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12901">
+            <rdf:Description rdf:about="#R_MAR12901">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/3MEACMPitr"/>
@@ -498042,13 +497030,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03244c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03244c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03244r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03244r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12902" sboTerm="SBO:0000185" id="MAR12902" name="3OHACMPitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12902" sboTerm="SBO:0000185" id="R_MAR12902" name="3OHACMPitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -498056,7 +497044,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12902">
+            <rdf:Description rdf:about="#R_MAR12902">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/3OHACMPitr"/>
@@ -498067,13 +497055,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03256c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03256c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03256r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03256r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12903" sboTerm="SBO:0000185" id="MAR12903" name="4BHGLZitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12903" sboTerm="SBO:0000185" id="R_MAR12903" name="4BHGLZitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -498081,7 +497069,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12903">
+            <rdf:Description rdf:about="#R_MAR12903">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/4BHGLZitr"/>
@@ -498092,13 +497080,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03269r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03269r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03269c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03269c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12904" sboTerm="SBO:0000185" id="MAR12904" name="4HATVACIDitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12904" sboTerm="SBO:0000185" id="R_MAR12904" name="4HATVACIDitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -498106,7 +497094,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12904">
+            <rdf:Description rdf:about="#R_MAR12904">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/4HATVACIDitr"/>
@@ -498117,13 +497105,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03271r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03271r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03271c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03271c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12905" sboTerm="SBO:0000185" id="MAR12905" name="4HATVLACitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12905" sboTerm="SBO:0000185" id="R_MAR12905" name="4HATVLACitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -498131,7 +497119,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12905">
+            <rdf:Description rdf:about="#R_MAR12905">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/4HATVLACitr"/>
@@ -498142,13 +497130,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03272r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03272r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03272c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03272c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12906" sboTerm="SBO:0000185" id="MAR12906" name="4HMDGLUCitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12906" sboTerm="SBO:0000185" id="R_MAR12906" name="4HMDGLUCitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -498156,7 +497144,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12906">
+            <rdf:Description rdf:about="#R_MAR12906">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/4HMDGLUCitr"/>
@@ -498167,13 +497155,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03275r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03275r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03275c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03275c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12907" sboTerm="SBO:0000185" id="MAR12907" name="4OHMDZitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12907" sboTerm="SBO:0000185" id="R_MAR12907" name="4OHMDZitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -498181,7 +497169,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12907">
+            <rdf:Description rdf:about="#R_MAR12907">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/4OHMDZitr"/>
@@ -498192,13 +497180,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03278r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03278r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03278c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03278c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12908" sboTerm="SBO:0000185" id="MAR12908" name="56DHPVSitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12908" sboTerm="SBO:0000185" id="R_MAR12908" name="56DHPVSitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -498206,7 +497194,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12908">
+            <rdf:Description rdf:about="#R_MAR12908">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/56DHPVSitr"/>
@@ -498217,13 +497205,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03279r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03279r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03279c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03279c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12909" sboTerm="SBO:0000185" id="MAR12909" name="56EPPVSitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12909" sboTerm="SBO:0000185" id="R_MAR12909" name="56EPPVSitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -498231,7 +497219,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12909">
+            <rdf:Description rdf:about="#R_MAR12909">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/56EPPVSitr"/>
@@ -498242,13 +497230,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03280r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03280r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03280c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03280c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12910" sboTerm="SBO:0000185" id="MAR12910" name="5OHFVSitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12910" sboTerm="SBO:0000185" id="R_MAR12910" name="5OHFVSitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -498256,7 +497244,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12910">
+            <rdf:Description rdf:about="#R_MAR12910">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/5OHFVSitr"/>
@@ -498267,13 +497255,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03285r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03285r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03285c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12911" sboTerm="SBO:0000185" id="MAR12911" name="5OHFVSGLUitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12911" sboTerm="SBO:0000185" id="R_MAR12911" name="5OHFVSGLUitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -498281,7 +497269,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12911">
+            <rdf:Description rdf:about="#R_MAR12911">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/5OHFVSGLUitr"/>
@@ -498292,13 +497280,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03286c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03286c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03286r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03286r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12912" sboTerm="SBO:0000185" id="MAR12912" name="6AHGLZitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12912" sboTerm="SBO:0000185" id="R_MAR12912" name="6AHGLZitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -498306,7 +497294,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12912">
+            <rdf:Description rdf:about="#R_MAR12912">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/6AHGLZitr"/>
@@ -498317,13 +497305,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03289r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03289r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03289c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03289c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12913" sboTerm="SBO:0000185" id="MAR12913" name="6BHGLZGLCitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12913" sboTerm="SBO:0000185" id="R_MAR12913" name="6BHGLZGLCitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -498331,7 +497319,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12913">
+            <rdf:Description rdf:about="#R_MAR12913">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/6BHGLZGLCitr"/>
@@ -498342,13 +497330,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03291r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03291r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03291c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03291c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12914" sboTerm="SBO:0000185" id="MAR12914" name="6CSMVitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12914" sboTerm="SBO:0000185" id="R_MAR12914" name="6CSMVitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -498356,7 +497344,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12914">
+            <rdf:Description rdf:about="#R_MAR12914">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/6CSMVitr"/>
@@ -498367,13 +497355,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03292c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03292c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03292r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03292r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12915" sboTerm="SBO:0000185" id="MAR12915" name="6HLVSTitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12915" sboTerm="SBO:0000185" id="R_MAR12915" name="6HLVSTitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -498381,7 +497369,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12915">
+            <rdf:Description rdf:about="#R_MAR12915">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/6HLVSTitr"/>
@@ -498392,13 +497380,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03296r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03296r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03296c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03296c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12916" sboTerm="SBO:0000185" id="MAR12916" name="6HLVSTACIDitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12916" sboTerm="SBO:0000185" id="R_MAR12916" name="6HLVSTACIDitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -498406,7 +497394,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12916">
+            <rdf:Description rdf:about="#R_MAR12916">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/6HLVSTACIDitr"/>
@@ -498417,13 +497405,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03297r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03297r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03297c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03297c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12917" sboTerm="SBO:0000185" id="MAR12917" name="6HMSMVitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12917" sboTerm="SBO:0000185" id="R_MAR12917" name="6HMSMVitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -498431,7 +497419,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12917">
+            <rdf:Description rdf:about="#R_MAR12917">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/6HMSMVitr"/>
@@ -498442,13 +497430,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03298c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03298c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03298r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03298r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12918" sboTerm="SBO:0000185" id="MAR12918" name="6HSMVitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12918" sboTerm="SBO:0000185" id="R_MAR12918" name="6HSMVitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -498456,7 +497444,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12918">
+            <rdf:Description rdf:about="#R_MAR12918">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/6HSMVitr"/>
@@ -498467,13 +497455,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03300r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03300r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03300c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03300c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12919" sboTerm="SBO:0000185" id="MAR12919" name="6MELVACIDitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12919" sboTerm="SBO:0000185" id="R_MAR12919" name="6MELVACIDitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -498481,7 +497469,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12919">
+            <rdf:Description rdf:about="#R_MAR12919">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/6MELVACIDitr"/>
@@ -498492,13 +497480,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03302r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03302r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03302c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03302c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12920" sboTerm="SBO:0000185" id="MAR12920" name="6MELVSTitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12920" sboTerm="SBO:0000185" id="R_MAR12920" name="6MELVSTitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -498506,7 +497494,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12920">
+            <rdf:Description rdf:about="#R_MAR12920">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/6MELVSTitr"/>
@@ -498517,13 +497505,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03303r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03303r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03303c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03303c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12921" sboTerm="SBO:0000185" id="MAR12921" name="6OHFVSitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12921" sboTerm="SBO:0000185" id="R_MAR12921" name="6OHFVSitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -498531,7 +497519,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12921">
+            <rdf:Description rdf:about="#R_MAR12921">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/6OHFVSitr"/>
@@ -498542,13 +497530,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03305c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03305c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03305r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03305r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12922" sboTerm="SBO:0000185" id="MAR12922" name="6OHFVSGLUitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12922" sboTerm="SBO:0000185" id="R_MAR12922" name="6OHFVSGLUitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -498556,7 +497544,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12922">
+            <rdf:Description rdf:about="#R_MAR12922">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/6OHFVSGLUitr"/>
@@ -498567,13 +497555,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03306c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03306c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03306r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03306r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12923" sboTerm="SBO:0000185" id="MAR12923" name="7AHGLZitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12923" sboTerm="SBO:0000185" id="R_MAR12923" name="7AHGLZitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -498581,7 +497569,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12923">
+            <rdf:Description rdf:about="#R_MAR12923">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/7AHGLZitr"/>
@@ -498592,13 +497580,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03307r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03307r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03307c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03307c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12924" sboTerm="SBO:0000185" id="MAR12924" name="7BHGLZGLCitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12924" sboTerm="SBO:0000185" id="R_MAR12924" name="7BHGLZGLCitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -498606,7 +497594,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12924">
+            <rdf:Description rdf:about="#R_MAR12924">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/7BHGLZGLCitr"/>
@@ -498617,13 +497605,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03309r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03309r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03309c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03309c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12925" sboTerm="SBO:0000185" id="MAR12925" name="7HPVSitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12925" sboTerm="SBO:0000185" id="R_MAR12925" name="7HPVSitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -498631,7 +497619,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12925">
+            <rdf:Description rdf:about="#R_MAR12925">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/7HPVSitr"/>
@@ -498642,13 +497630,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03312r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03312r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03312c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03312c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12926" sboTerm="SBO:0000185" id="MAR12926" name="ACMPitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12926" sboTerm="SBO:0000185" id="R_MAR12926" name="ACMPitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -498656,7 +497644,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12926">
+            <rdf:Description rdf:about="#R_MAR12926">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ACMPitr"/>
@@ -498667,13 +497655,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03402c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03402c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03402r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03402r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12927" sboTerm="SBO:0000185" id="MAR12927" name="ACMPGLUitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12927" sboTerm="SBO:0000185" id="R_MAR12927" name="ACMPGLUitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -498681,7 +497669,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12927">
+            <rdf:Description rdf:about="#R_MAR12927">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ACMPGLUitr"/>
@@ -498692,13 +497680,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03403r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03403r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03403c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03403c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12928" sboTerm="SBO:0000185" id="MAR12928" name="AM19CSitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12928" sboTerm="SBO:0000185" id="R_MAR12928" name="AM19CSitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -498706,7 +497694,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12928">
+            <rdf:Description rdf:about="#R_MAR12928">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/AM19CSitr"/>
@@ -498717,13 +497705,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03420r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03420r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03420c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03420c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12929" sboTerm="SBO:0000185" id="MAR12929" name="AM1ACCSitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12929" sboTerm="SBO:0000185" id="R_MAR12929" name="AM1ACCSitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -498731,7 +497719,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12929">
+            <rdf:Description rdf:about="#R_MAR12929">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/AM1ACCSitr"/>
@@ -498742,13 +497730,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03422c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03422c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03422r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03422r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12930" sboTerm="SBO:0000185" id="MAR12930" name="AM1ACSitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12930" sboTerm="SBO:0000185" id="R_MAR12930" name="AM1ACSitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -498756,7 +497744,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12930">
+            <rdf:Description rdf:about="#R_MAR12930">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/AM1ACSitr"/>
@@ -498767,13 +497755,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03423r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03423r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03423c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03423c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12931" sboTerm="SBO:0000185" id="MAR12931" name="AM1ALCSitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12931" sboTerm="SBO:0000185" id="R_MAR12931" name="AM1ALCSitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -498781,7 +497769,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12931">
+            <rdf:Description rdf:about="#R_MAR12931">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/AM1ALCSitr"/>
@@ -498792,13 +497780,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03424c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03424c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03424r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03424r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12932" sboTerm="SBO:0000185" id="MAR12932" name="AM1C9CSitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12932" sboTerm="SBO:0000185" id="R_MAR12932" name="AM1C9CSitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -498806,7 +497794,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12932">
+            <rdf:Description rdf:about="#R_MAR12932">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/AM1C9CSitr"/>
@@ -498817,13 +497805,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03426r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03426r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03426c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03426c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12933" sboTerm="SBO:0000185" id="MAR12933" name="AM1CGLCitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12933" sboTerm="SBO:0000185" id="R_MAR12933" name="AM1CGLCitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -498831,7 +497819,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12933">
+            <rdf:Description rdf:about="#R_MAR12933">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/AM1CGLCitr"/>
@@ -498842,13 +497830,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03428c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03428c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03428r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03428r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12934" sboTerm="SBO:0000185" id="MAR12934" name="AM4N9CSitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12934" sboTerm="SBO:0000185" id="R_MAR12934" name="AM4N9CSitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -498856,7 +497844,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12934">
+            <rdf:Description rdf:about="#R_MAR12934">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/AM4N9CSitr"/>
@@ -498867,13 +497855,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03430r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03430r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03430c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03430c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12935" sboTerm="SBO:0000185" id="MAR12935" name="AM4NCSitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12935" sboTerm="SBO:0000185" id="R_MAR12935" name="AM4NCSitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -498881,7 +497869,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12935">
+            <rdf:Description rdf:about="#R_MAR12935">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/AM4NCSitr"/>
@@ -498892,13 +497880,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03431c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03431c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03431r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03431r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12936" sboTerm="SBO:0000185" id="MAR12936" name="CARIBUP_Sitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12936" sboTerm="SBO:0000185" id="R_MAR12936" name="CARIBUP_Sitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -498906,7 +497894,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12936">
+            <rdf:Description rdf:about="#R_MAR12936">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CARIBUP_Sitr"/>
@@ -498917,13 +497905,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03506c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03506c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03506r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03506r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12937" sboTerm="SBO:0000185" id="MAR12937" name="CARIBUPGLU_Sitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12937" sboTerm="SBO:0000185" id="R_MAR12937" name="CARIBUPGLU_Sitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -498931,7 +497919,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12937">
+            <rdf:Description rdf:about="#R_MAR12937">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CARIBUPGLU_Sitr"/>
@@ -498942,13 +497930,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03507c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03507c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03507r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03507r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12938" sboTerm="SBO:0000185" id="MAR12938" name="CRGLZitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12938" sboTerm="SBO:0000185" id="R_MAR12938" name="CRGLZitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -498956,7 +497944,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12938">
+            <rdf:Description rdf:about="#R_MAR12938">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CRGLZitr"/>
@@ -498967,13 +497955,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03513r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03513r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03513c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03513c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12939" sboTerm="SBO:0000185" id="MAR12939" name="CRVSitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12939" sboTerm="SBO:0000185" id="R_MAR12939" name="CRVSitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -498981,7 +497969,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12939">
+            <rdf:Description rdf:about="#R_MAR12939">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CRVSitr"/>
@@ -498992,13 +497980,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03514c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03514c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03514r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03514r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12940" sboTerm="SBO:0000185" id="MAR12940" name="CRVSM22itr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12940" sboTerm="SBO:0000185" id="R_MAR12940" name="CRVSM22itr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -499006,7 +497994,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12940">
+            <rdf:Description rdf:about="#R_MAR12940">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CRVSM22itr"/>
@@ -499017,13 +498005,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03516r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03516r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03516c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03516c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12941" sboTerm="SBO:0000185" id="MAR12941" name="CRVSM24itr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12941" sboTerm="SBO:0000185" id="R_MAR12941" name="CRVSM24itr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -499031,7 +498019,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12941">
+            <rdf:Description rdf:about="#R_MAR12941">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CRVSM24itr"/>
@@ -499042,13 +498030,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03518r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03518r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03518c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03518c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12942" sboTerm="SBO:0000185" id="MAR12942" name="CRVSM31itr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12942" sboTerm="SBO:0000185" id="R_MAR12942" name="CRVSM31itr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -499056,7 +498044,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12942">
+            <rdf:Description rdf:about="#R_MAR12942">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CRVSM31itr"/>
@@ -499067,13 +498055,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03519c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03519r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03519r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12943" sboTerm="SBO:0000185" id="MAR12943" name="CSAitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12943" sboTerm="SBO:0000185" id="R_MAR12943" name="CSAitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -499081,7 +498069,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12943">
+            <rdf:Description rdf:about="#R_MAR12943">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CSAitr"/>
@@ -499092,13 +498080,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03520c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03520c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03520r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03520r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12944" sboTerm="SBO:0000185" id="MAR12944" name="DEOXFVSitx" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12944" sboTerm="SBO:0000185" id="R_MAR12944" name="DEOXFVSitx" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -499106,7 +498094,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12944">
+            <rdf:Description rdf:about="#R_MAR12944">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/DEOXFVSitx"/>
@@ -499117,13 +498105,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03546c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03546c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03546x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03546x" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12945" sboTerm="SBO:0000185" id="MAR12945" name="DESFVSitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12945" sboTerm="SBO:0000185" id="R_MAR12945" name="DESFVSitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -499131,7 +498119,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12945">
+            <rdf:Description rdf:about="#R_MAR12945">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/DESFVSitr"/>
@@ -499142,13 +498130,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03547c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03547c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03547r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03547r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12946" sboTerm="SBO:0000185" id="MAR12946" name="DSPVSitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12946" sboTerm="SBO:0000185" id="R_MAR12946" name="DSPVSitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -499156,7 +498144,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12946">
+            <rdf:Description rdf:about="#R_MAR12946">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/DSPVSitr"/>
@@ -499167,13 +498155,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03566r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03566r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03566c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03566c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12947" sboTerm="SBO:0000185" id="MAR12947" name="EPOXTACitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12947" sboTerm="SBO:0000185" id="R_MAR12947" name="EPOXTACitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -499181,7 +498169,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12947">
+            <rdf:Description rdf:about="#R_MAR12947">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EPOXTACitr"/>
@@ -499192,13 +498180,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03572c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03572c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03572r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03572r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12948" sboTerm="SBO:0000185" id="MAR12948" name="FVSitx" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12948" sboTerm="SBO:0000185" id="R_MAR12948" name="FVSitx" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -499206,7 +498194,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12948">
+            <rdf:Description rdf:about="#R_MAR12948">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FVSitx"/>
@@ -499217,13 +498205,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03579c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03579c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03579x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03579x" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12949" sboTerm="SBO:0000185" id="MAR12949" name="FVSCOAitx" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12949" sboTerm="SBO:0000185" id="R_MAR12949" name="FVSCOAitx" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -499231,7 +498219,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12949">
+            <rdf:Description rdf:about="#R_MAR12949">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FVSCOAitx"/>
@@ -499242,13 +498230,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03580c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03580c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03580x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03580x" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12950" sboTerm="SBO:0000185" id="MAR12950" name="FVSTETitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12950" sboTerm="SBO:0000185" id="R_MAR12950" name="FVSTETitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -499256,7 +498244,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12950">
+            <rdf:Description rdf:about="#R_MAR12950">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FVSTETitr"/>
@@ -499267,13 +498255,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03582c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03582c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03582r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03582r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12951" sboTerm="SBO:0000185" id="MAR12951" name="FVSTETGLUitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12951" sboTerm="SBO:0000185" id="R_MAR12951" name="FVSTETGLUitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -499281,7 +498269,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12951">
+            <rdf:Description rdf:about="#R_MAR12951">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FVSTETGLUitr"/>
@@ -499292,13 +498280,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03583c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03583c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03583r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03583r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12952" sboTerm="SBO:0000185" id="MAR12952" name="GLC3MEACPitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12952" sboTerm="SBO:0000185" id="R_MAR12952" name="GLC3MEACPitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -499306,7 +498294,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12952">
+            <rdf:Description rdf:about="#R_MAR12952">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GLC3MEACPitr"/>
@@ -499317,13 +498305,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03594c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03594c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03594r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03594r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12953" sboTerm="SBO:0000185" id="MAR12953" name="GLZitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12953" sboTerm="SBO:0000185" id="R_MAR12953" name="GLZitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -499331,7 +498319,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12953">
+            <rdf:Description rdf:about="#R_MAR12953">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GLZitr"/>
@@ -499342,13 +498330,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03634c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03634c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03634r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03634r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12954" sboTerm="SBO:0000185" id="MAR12954" name="GTACMPitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12954" sboTerm="SBO:0000185" id="R_MAR12954" name="GTACMPitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -499356,7 +498344,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12954">
+            <rdf:Description rdf:about="#R_MAR12954">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GTACMPitr"/>
@@ -499367,13 +498355,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03636c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03636c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03636r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03636r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12955" sboTerm="SBO:0000185" id="MAR12955" name="IBUP_Ritr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12955" sboTerm="SBO:0000185" id="R_MAR12955" name="IBUP_Ritr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -499381,7 +498369,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12955">
+            <rdf:Description rdf:about="#R_MAR12955">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/IBUP_Ritr"/>
@@ -499392,13 +498380,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03686c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03686c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03686r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03686r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12956" sboTerm="SBO:0000185" id="MAR12956" name="IBUP_Sitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12956" sboTerm="SBO:0000185" id="R_MAR12956" name="IBUP_Sitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -499406,7 +498394,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12956">
+            <rdf:Description rdf:about="#R_MAR12956">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/IBUP_Sitr"/>
@@ -499417,13 +498405,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03687c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03687c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03687r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03687r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12957" sboTerm="SBO:0000185" id="MAR12957" name="IBUPGLUCitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12957" sboTerm="SBO:0000185" id="R_MAR12957" name="IBUPGLUCitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -499431,7 +498419,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12957">
+            <rdf:Description rdf:about="#R_MAR12957">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/IBUPGLUCitr"/>
@@ -499442,13 +498430,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03690r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03690r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03690c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03690c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12958" sboTerm="SBO:0000185" id="MAR12958" name="LSTN1GLUCitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12958" sboTerm="SBO:0000185" id="R_MAR12958" name="LSTN1GLUCitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -499456,7 +498444,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12958">
+            <rdf:Description rdf:about="#R_MAR12958">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/LSTN1GLUCitr"/>
@@ -499467,13 +498455,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03730c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03730c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03730r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03730r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12959" sboTerm="SBO:0000185" id="MAR12959" name="LSTNitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12959" sboTerm="SBO:0000185" id="R_MAR12959" name="LSTNitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -499481,7 +498469,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12959">
+            <rdf:Description rdf:about="#R_MAR12959">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/LSTNitr"/>
@@ -499492,13 +498480,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03729c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03729c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03729r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03729r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12960" sboTerm="SBO:0000185" id="MAR12960" name="LSTNM1itr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12960" sboTerm="SBO:0000185" id="R_MAR12960" name="LSTNM1itr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -499506,7 +498494,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12960">
+            <rdf:Description rdf:about="#R_MAR12960">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/LSTNM1itr"/>
@@ -499517,13 +498505,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03731c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03731c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03731r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03731r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12961" sboTerm="SBO:0000185" id="MAR12961" name="LSTNM2itr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12961" sboTerm="SBO:0000185" id="R_MAR12961" name="LSTNM2itr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -499531,7 +498519,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12961">
+            <rdf:Description rdf:about="#R_MAR12961">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/LSTNM2itr"/>
@@ -499542,13 +498530,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03732c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03732c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03732r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03732r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12962" sboTerm="SBO:0000185" id="MAR12962" name="LSTNM4itr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12962" sboTerm="SBO:0000185" id="R_MAR12962" name="LSTNM4itr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -499556,7 +498544,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12962">
+            <rdf:Description rdf:about="#R_MAR12962">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/LSTNM4itr"/>
@@ -499567,13 +498555,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03733c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03733c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03733r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03733r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12963" sboTerm="SBO:0000185" id="MAR12963" name="LSTNM5itr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12963" sboTerm="SBO:0000185" id="R_MAR12963" name="LSTNM5itr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -499581,7 +498569,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12963">
+            <rdf:Description rdf:about="#R_MAR12963">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/LSTNM5itr"/>
@@ -499592,13 +498580,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03734c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03734c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03734r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03734r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12964" sboTerm="SBO:0000185" id="MAR12964" name="LSTNM7itr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12964" sboTerm="SBO:0000185" id="R_MAR12964" name="LSTNM7itr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -499606,7 +498594,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12964">
+            <rdf:Description rdf:about="#R_MAR12964">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/LSTNM7itr"/>
@@ -499617,13 +498605,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03735r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03735r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03735c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03735c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12965" sboTerm="SBO:0000185" id="MAR12965" name="LVSTitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12965" sboTerm="SBO:0000185" id="R_MAR12965" name="LVSTitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -499631,7 +498619,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12965">
+            <rdf:Description rdf:about="#R_MAR12965">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/LVSTitr"/>
@@ -499642,13 +498630,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03736c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03736c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03736r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03736r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12966" sboTerm="SBO:0000627" id="MAR12966" name="EX_lvstacid(e)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12966" sboTerm="SBO:0000627" id="R_MAR12966" name="EX_lvstacid(e)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -499656,7 +498644,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12966">
+            <rdf:Description rdf:about="#R_MAR12966">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_lvstacid_e"/>
@@ -499667,10 +498655,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03737e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03737e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12967" sboTerm="SBO:0000185" id="MAR12967" name="LVSTACIDitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12967" sboTerm="SBO:0000185" id="R_MAR12967" name="LVSTACIDitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -499678,7 +498666,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12967">
+            <rdf:Description rdf:about="#R_MAR12967">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/LVSTACIDitr"/>
@@ -499689,13 +498677,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03737c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03737c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03737r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03737r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12968" sboTerm="SBO:0000185" id="MAR12968" name="MDZitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12968" sboTerm="SBO:0000185" id="R_MAR12968" name="MDZitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -499703,7 +498691,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12968">
+            <rdf:Description rdf:about="#R_MAR12968">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/MDZitr"/>
@@ -499714,13 +498702,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03756c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03756c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03756r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03756r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12969" sboTerm="SBO:0000185" id="MAR12969" name="MDZGLCitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12969" sboTerm="SBO:0000185" id="R_MAR12969" name="MDZGLCitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -499728,7 +498716,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12969">
+            <rdf:Description rdf:about="#R_MAR12969">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/MDZGLCitr"/>
@@ -499739,13 +498727,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03757r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03757r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03757c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03757c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12970" sboTerm="SBO:0000185" id="MAR12970" name="NDERSVitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12970" sboTerm="SBO:0000185" id="R_MAR12970" name="NDERSVitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -499753,7 +498741,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12970">
+            <rdf:Description rdf:about="#R_MAR12970">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/NDERSVitr"/>
@@ -499764,13 +498752,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03780c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03780c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03780r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03780r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12971" sboTerm="SBO:0000185" id="MAR12971" name="NFDNPYitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12971" sboTerm="SBO:0000185" id="R_MAR12971" name="NFDNPYitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -499778,7 +498766,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12971">
+            <rdf:Description rdf:about="#R_MAR12971">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/NFDNPYitr"/>
@@ -499789,13 +498777,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03783c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03783c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03783r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03783r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12972" sboTerm="SBO:0000185" id="MAR12972" name="NFDOHitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12972" sboTerm="SBO:0000185" id="R_MAR12972" name="NFDOHitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -499803,7 +498791,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12972">
+            <rdf:Description rdf:about="#R_MAR12972">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/NFDOHitr"/>
@@ -499814,13 +498802,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03784r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03784r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03784c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03784c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12973" sboTerm="SBO:0000185" id="MAR12973" name="PROFVSCOAitx" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12973" sboTerm="SBO:0000185" id="R_MAR12973" name="PROFVSCOAitx" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -499828,7 +498816,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12973">
+            <rdf:Description rdf:about="#R_MAR12973">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PROFVSCOAitx"/>
@@ -499839,13 +498827,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03893x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03893x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03893c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03893c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12974" sboTerm="SBO:0000185" id="MAR12974" name="PTVSTLACitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12974" sboTerm="SBO:0000185" id="R_MAR12974" name="PTVSTLACitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -499853,7 +498841,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12974">
+            <rdf:Description rdf:about="#R_MAR12974">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PTVSTLACitr"/>
@@ -499864,13 +498852,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03913r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03913r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03913c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03913c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12975" sboTerm="SBO:0000185" id="MAR12975" name="PTVSTM13itr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12975" sboTerm="SBO:0000185" id="R_MAR12975" name="PTVSTM13itr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -499878,7 +498866,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12975">
+            <rdf:Description rdf:about="#R_MAR12975">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PTVSTM13itr"/>
@@ -499889,13 +498877,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03914r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03914r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03914c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03914c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12976" sboTerm="SBO:0000185" id="MAR12976" name="PTVSTM13te" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12976" sboTerm="SBO:0000185" id="R_MAR12976" name="PTVSTM13te" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -499903,7 +498891,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12976">
+            <rdf:Description rdf:about="#R_MAR12976">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PTVSTM13te"/>
@@ -499914,13 +498902,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03914c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03914c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03914e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03914e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12977" sboTerm="SBO:0000627" id="MAR12977" name="EX_ptvstm13(e)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12977" sboTerm="SBO:0000627" id="R_MAR12977" name="EX_ptvstm13(e)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -499928,7 +498916,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12977">
+            <rdf:Description rdf:about="#R_MAR12977">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_ptvstm13_e"/>
@@ -499939,10 +498927,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03914e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03914e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR12978" sboTerm="SBO:0000185" id="MAR12978" name="PTVSTM3itr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12978" sboTerm="SBO:0000185" id="R_MAR12978" name="PTVSTM3itr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -499950,7 +498938,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12978">
+            <rdf:Description rdf:about="#R_MAR12978">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PTVSTM3itr"/>
@@ -499961,13 +498949,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03915c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03915c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03915r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03915r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12979" sboTerm="SBO:0000185" id="MAR12979" name="PVSitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12979" sboTerm="SBO:0000185" id="R_MAR12979" name="PVSitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -499975,7 +498963,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12979">
+            <rdf:Description rdf:about="#R_MAR12979">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PVSitr"/>
@@ -499986,13 +498974,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03916c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03916c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03916r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03916r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12980" sboTerm="SBO:0000185" id="MAR12980" name="PVSGLUCitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12980" sboTerm="SBO:0000185" id="R_MAR12980" name="PVSGLUCitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -500000,7 +498988,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12980">
+            <rdf:Description rdf:about="#R_MAR12980">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PVSGLUCitr"/>
@@ -500011,13 +498999,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03917r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03917r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03917c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03917c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12981" sboTerm="SBO:0000185" id="MAR12981" name="RSVLACitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12981" sboTerm="SBO:0000185" id="R_MAR12981" name="RSVLACitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -500025,7 +499013,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12981">
+            <rdf:Description rdf:about="#R_MAR12981">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/RSVLACitr"/>
@@ -500036,13 +499024,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03920c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03920c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03920r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03920r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12982" sboTerm="SBO:0000185" id="MAR12982" name="TACRitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12982" sboTerm="SBO:0000185" id="R_MAR12982" name="TACRitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -500050,7 +499038,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12982">
+            <rdf:Description rdf:about="#R_MAR12982">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/TACRitr"/>
@@ -500061,13 +499049,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03959c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03959c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03959r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03959r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12983" sboTerm="SBO:0000185" id="MAR12983" name="THSACMPitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12983" sboTerm="SBO:0000185" id="R_MAR12983" name="THSACMPitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -500075,7 +499063,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12983">
+            <rdf:Description rdf:about="#R_MAR12983">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/THSACMPitr"/>
@@ -500086,13 +499074,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03995r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03995r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03995c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03995c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12984" sboTerm="SBO:0000185" id="MAR12984" name="TLACFVSitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12984" sboTerm="SBO:0000185" id="R_MAR12984" name="TLACFVSitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -500100,7 +499088,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12984">
+            <rdf:Description rdf:about="#R_MAR12984">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/TLACFVSitr"/>
@@ -500111,13 +499099,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03998r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03998r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03998c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03998c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12985" sboTerm="SBO:0000185" id="MAR12985" name="TMACMPitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12985" sboTerm="SBO:0000185" id="R_MAR12985" name="TMACMPitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -500125,7 +499113,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12985">
+            <rdf:Description rdf:about="#R_MAR12985">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/TMACMPitr"/>
@@ -500136,13 +499124,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03999r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03999r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03999c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03999c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12986" sboTerm="SBO:0000185" id="MAR12986" name="TMDitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12986" sboTerm="SBO:0000185" id="R_MAR12986" name="TMDitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -500150,7 +499138,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12986">
+            <rdf:Description rdf:about="#R_MAR12986">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/TMDitr"/>
@@ -500161,13 +499149,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM04000c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04000c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM04000r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04000r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12987" sboTerm="SBO:0000185" id="MAR12987" name="TMDM1itr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12987" sboTerm="SBO:0000185" id="R_MAR12987" name="TMDM1itr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -500175,7 +499163,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12987">
+            <rdf:Description rdf:about="#R_MAR12987">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/TMDM1itr"/>
@@ -500186,13 +499174,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM04001r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04001r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM04001c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04001c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12988" sboTerm="SBO:0000185" id="MAR12988" name="TMDM3itr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12988" sboTerm="SBO:0000185" id="R_MAR12988" name="TMDM3itr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -500200,7 +499188,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12988">
+            <rdf:Description rdf:about="#R_MAR12988">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/TMDM3itr"/>
@@ -500211,13 +499199,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM04002c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04002c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM04002r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04002r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12989" sboTerm="SBO:0000185" id="MAR12989" name="TMDM5itr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12989" sboTerm="SBO:0000185" id="R_MAR12989" name="TMDM5itr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -500225,7 +499213,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12989">
+            <rdf:Description rdf:about="#R_MAR12989">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/TMDM5itr"/>
@@ -500236,13 +499224,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM04003c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04003c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM04003r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04003r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12990" sboTerm="SBO:0000185" id="MAR12990" name="TSACMGLUCitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12990" sboTerm="SBO:0000185" id="R_MAR12990" name="TSACMGLUCitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -500250,7 +499238,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12990">
+            <rdf:Description rdf:about="#R_MAR12990">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/TSACMGLUCitr"/>
@@ -500261,13 +499249,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM04038c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04038c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM04038r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04038r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12991" sboTerm="SBO:0000176" id="MAR12991" name="3HPVSCOAhc" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12991" sboTerm="SBO:0000176" id="R_MAR12991" name="3HPVSCOAhc" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -500275,7 +499263,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12991">
+            <rdf:Description rdf:about="#R_MAR12991">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/3HPVSCOAhc"/>
@@ -500286,17 +499274,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03235c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03235c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01334c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03236c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03236c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12992" sboTerm="SBO:0000176" id="MAR12992" name="3HPVSTEThc" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12992" sboTerm="SBO:0000176" id="R_MAR12992" name="3HPVSTEThc" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -500304,7 +499292,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12992">
+            <rdf:Description rdf:about="#R_MAR12992">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/3HPVSTEThc"/>
@@ -500315,16 +499303,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03238c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03238c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03237c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03237c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12993" sboTerm="SBO:0000176" id="MAR12993" name="ACMPGLUTTRsc" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12993" sboTerm="SBO:0000176" id="R_MAR12993" name="ACMPGLUTTRsc" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -500332,7 +499320,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12993">
+            <rdf:Description rdf:about="#R_MAR12993">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ACMPGLUTTRsc"/>
@@ -500343,15 +499331,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03404r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03404r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01974r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03526r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01986r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01974r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03526r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12994" sboTerm="SBO:0000176" id="MAR12994" name="FVSCOAhc" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12994" sboTerm="SBO:0000176" id="R_MAR12994" name="FVSCOAhc" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -500359,7 +499347,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12994">
+            <rdf:Description rdf:about="#R_MAR12994">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FVSCOAhc"/>
@@ -500370,17 +499358,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03579c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03579c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01334c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03580c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03580c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12995" sboTerm="SBO:0000176" id="MAR12995" name="MDZGLChr" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12995" sboTerm="SBO:0000176" id="R_MAR12995" name="MDZGLChr" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -500388,7 +499376,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12995">
+            <rdf:Description rdf:about="#R_MAR12995">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/MDZGLChr"/>
@@ -500399,15 +499387,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03109r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03756r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03109r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03756r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03106r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03757r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03757r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12996" sboTerm="SBO:0000176" id="MAR12996" name="TMACMPhr" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12996" sboTerm="SBO:0000176" id="R_MAR12996" name="TMACMPhr" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -500415,7 +499403,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12996">
+            <rdf:Description rdf:about="#R_MAR12996">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/TMACMPhr"/>
@@ -500426,22 +499414,22 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039r" stoichiometry="5" constant="true"/>
-          <speciesReference species="MAM02555r" stoichiometry="6" constant="true"/>
-          <speciesReference species="MAM02630r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02877r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03779r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02682r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="5" constant="true"/>
+          <speciesReference species="M_MAM02555r" stoichiometry="6" constant="true"/>
+          <speciesReference species="M_MAM02630r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02877r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03779r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02682r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040r" stoichiometry="5" constant="true"/>
-          <speciesReference species="MAM02554r" stoichiometry="6" constant="true"/>
-          <speciesReference species="MAM02871r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03999r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02681r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="5" constant="true"/>
+          <speciesReference species="M_MAM02554r" stoichiometry="6" constant="true"/>
+          <speciesReference species="M_MAM02871r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03999r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02681r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12997" sboTerm="SBO:0000185" id="MAR12997" name="1OHMDZitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12997" sboTerm="SBO:0000185" id="R_MAR12997" name="1OHMDZitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -500449,7 +499437,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12997">
+            <rdf:Description rdf:about="#R_MAR12997">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/1OHMDZitr"/>
@@ -500460,13 +499448,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01903r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01903r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01903c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01903c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12998" sboTerm="SBO:0000185" id="MAR12998" name="CYSACMPitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12998" sboTerm="SBO:0000185" id="R_MAR12998" name="CYSACMPitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -500474,7 +499462,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12998">
+            <rdf:Description rdf:about="#R_MAR12998">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CYSACMPitr"/>
@@ -500485,13 +499473,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03526r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03526r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03526c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03526c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR12999" sboTerm="SBO:0000185" id="MAR12999" name="NFDACitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR12999" sboTerm="SBO:0000185" id="R_MAR12999" name="NFDACitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -500499,7 +499487,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR12999">
+            <rdf:Description rdf:about="#R_MAR12999">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/NFDACitr"/>
@@ -500510,13 +499498,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03781r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03781r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03781c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03781c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR13000" sboTerm="SBO:0000185" id="MAR13000" name="ACMPGLUTitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR13000" sboTerm="SBO:0000185" id="R_MAR13000" name="ACMPGLUTitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -500524,7 +499512,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR13000">
+            <rdf:Description rdf:about="#R_MAR13000">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ACMPGLUTitr"/>
@@ -500535,13 +499523,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03404c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03404c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03404r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03404r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR13001" sboTerm="SBO:0000176" id="MAR13001" name="NAPQIhr" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR13001" sboTerm="SBO:0000176" id="R_MAR13001" name="NAPQIhr" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -500549,7 +499537,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR13001">
+            <rdf:Description rdf:about="#R_MAR13001">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/NAPQIhr"/>
@@ -500560,18 +499548,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03402r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03402r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040r" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02554r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03779r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02554r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03779r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR13002" sboTerm="SBO:0000185" id="MAR13002" name="H2O2itr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR13002" sboTerm="SBO:0000185" id="R_MAR13002" name="H2O2itr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -500579,7 +499567,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR13002">
+            <rdf:Description rdf:about="#R_MAR13002">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/H2O2ter"/>
@@ -500591,13 +499579,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02041r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02041c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR13003" sboTerm="SBO:0000176" id="MAR13003" name="UDPRIBc" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR13003" sboTerm="SBO:0000176" id="R_MAR13003" name="UDPRIBc" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -500605,7 +499593,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR13003">
+            <rdf:Description rdf:about="#R_MAR13003">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/UDPRIBc"/>
@@ -500616,17 +499604,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03109c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03109c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01596c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM04059c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01596c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04059c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR13004" sboTerm="SBO:0000185" id="MAR13004" name="GLYitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR13004" sboTerm="SBO:0000185" id="R_MAR13004" name="GLYitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -500634,7 +499622,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR13004">
+            <rdf:Description rdf:about="#R_MAR13004">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/GLYitr"/>
@@ -500645,13 +499633,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01986r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01986c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR13005" sboTerm="SBO:0000185" id="MAR13005" name="PAPSitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR13005" sboTerm="SBO:0000185" id="R_MAR13005" name="PAPSitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -500659,7 +499647,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR13005">
+            <rdf:Description rdf:about="#R_MAR13005">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PAPSitr"/>
@@ -500670,13 +499658,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02682r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02682r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02682c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02682c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR13006" sboTerm="SBO:0000185" id="MAR13006" name="PAPitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR13006" sboTerm="SBO:0000185" id="R_MAR13006" name="PAPitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -500684,7 +499672,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR13006">
+            <rdf:Description rdf:about="#R_MAR13006">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PAPitr"/>
@@ -500695,13 +499683,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02681r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02681r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02681c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02681c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR13007" sboTerm="SBO:0000185" id="MAR13007" name="13DMTitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR13007" sboTerm="SBO:0000185" id="R_MAR13007" name="13DMTitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -500709,7 +499697,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR13007">
+            <rdf:Description rdf:about="#R_MAR13007">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/13DMTitr"/>
@@ -500720,13 +499708,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01875r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01875r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01875c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01875c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR13008" sboTerm="SBO:0000185" id="MAR13008" name="15DMTitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR13008" sboTerm="SBO:0000185" id="R_MAR13008" name="15DMTitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -500734,7 +499722,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR13008">
+            <rdf:Description rdf:about="#R_MAR13008">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/15DMTitr"/>
@@ -500745,13 +499733,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01891r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01891r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01891c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01891c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR13009" sboTerm="SBO:0000185" id="MAR13009" name="ATVACIDitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR13009" sboTerm="SBO:0000185" id="R_MAR13009" name="ATVACIDitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -500759,7 +499747,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR13009">
+            <rdf:Description rdf:about="#R_MAR13009">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ATVACIDitr"/>
@@ -500770,13 +499758,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03476c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03476c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03476r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03476r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR13010" sboTerm="SBO:0000185" id="MAR13010" name="ATVLACitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR13010" sboTerm="SBO:0000185" id="R_MAR13010" name="ATVLACitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -500784,7 +499772,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR13010">
+            <rdf:Description rdf:about="#R_MAR13010">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/ATVLACitr"/>
@@ -500795,13 +499783,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03479c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03479c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03479r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03479r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR13011" sboTerm="SBO:0000185" id="MAR13011" name="31DMTitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR13011" sboTerm="SBO:0000185" id="R_MAR13011" name="31DMTitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -500809,7 +499797,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR13011">
+            <rdf:Description rdf:about="#R_MAR13011">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/31DMTitr"/>
@@ -500820,13 +499808,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03196r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03196r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03196c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03196c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR13012" sboTerm="SBO:0000185" id="MAR13012" name="SMVitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR13012" sboTerm="SBO:0000185" id="R_MAR13012" name="SMVitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -500834,7 +499822,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR13012">
+            <rdf:Description rdf:about="#R_MAR13012">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/SMVitr"/>
@@ -500845,13 +499833,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03934c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03934c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03934r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03934r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR13013" sboTerm="SBO:0000185" id="MAR13013" name="6BHGLZitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR13013" sboTerm="SBO:0000185" id="R_MAR13013" name="6BHGLZitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -500859,7 +499847,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR13013">
+            <rdf:Description rdf:about="#R_MAR13013">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/6BHGLZitr"/>
@@ -500870,13 +499858,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03290r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03290r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03290c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03290c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR13014" sboTerm="SBO:0000185" id="MAR13014" name="7BHGLZitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR13014" sboTerm="SBO:0000185" id="R_MAR13014" name="7BHGLZitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -500884,7 +499872,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR13014">
+            <rdf:Description rdf:about="#R_MAR13014">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/7BHGLZitr"/>
@@ -500895,13 +499883,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03308r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03308r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03308c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03308c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR13015" sboTerm="SBO:0000185" id="MAR13015" name="AM1CCSitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR13015" sboTerm="SBO:0000185" id="R_MAR13015" name="AM1CCSitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -500909,7 +499897,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR13015">
+            <rdf:Description rdf:about="#R_MAR13015">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/AM1CCSitr"/>
@@ -500920,13 +499908,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03427r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03427r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03427c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03427c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR13016" sboTerm="SBO:0000185" id="MAR13016" name="LST4EXPitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR13016" sboTerm="SBO:0000185" id="R_MAR13016" name="LST4EXPitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -500934,7 +499922,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR13016">
+            <rdf:Description rdf:about="#R_MAR13016">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/LST4EXPitr"/>
@@ -500945,13 +499933,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03728r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03728r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03728c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03728c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR13017" sboTerm="SBO:0000185" id="MAR13017" name="MHGLZitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR13017" sboTerm="SBO:0000185" id="R_MAR13017" name="MHGLZitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -500959,7 +499947,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR13017">
+            <rdf:Description rdf:about="#R_MAR13017">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/MHGLZitr"/>
@@ -500970,13 +499958,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03770r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03770r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03770c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03770c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR13018" sboTerm="SBO:0000185" id="MAR13018" name="RSVitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR13018" sboTerm="SBO:0000185" id="R_MAR13018" name="RSVitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -500984,7 +499972,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR13018">
+            <rdf:Description rdf:about="#R_MAR13018">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/RSVitr"/>
@@ -500995,13 +499983,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03918c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03918c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03918r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03918r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR13019" sboTerm="SBO:0000185" id="MAR13019" name="TRIPVSitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR13019" sboTerm="SBO:0000185" id="R_MAR13019" name="TRIPVSitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -501009,7 +499997,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR13019">
+            <rdf:Description rdf:about="#R_MAR13019">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/TRIPVSitr"/>
@@ -501020,13 +500008,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM04007r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04007r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM04007c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04007c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR13020" sboTerm="SBO:0000185" id="MAR13020" name="SMVACIDitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR13020" sboTerm="SBO:0000185" id="R_MAR13020" name="SMVACIDitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -501034,7 +500022,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR13020">
+            <rdf:Description rdf:about="#R_MAR13020">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/SMVACIDitr"/>
@@ -501045,13 +500033,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03935c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03935c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03935r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03935r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR13021" sboTerm="SBO:0000185" id="MAR13021" name="PTVSTitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR13021" sboTerm="SBO:0000185" id="R_MAR13021" name="PTVSTitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -501059,7 +500047,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR13021">
+            <rdf:Description rdf:about="#R_MAR13021">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PTVSTitr"/>
@@ -501070,13 +500058,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03911c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03911c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03911r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03911r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR13022" sboTerm="SBO:0000185" id="MAR13022" name="3HIBUP_Sitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR13022" sboTerm="SBO:0000185" id="R_MAR13022" name="3HIBUP_Sitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -501084,7 +500072,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR13022">
+            <rdf:Description rdf:about="#R_MAR13022">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/3HIBUP_Sitr"/>
@@ -501095,13 +500083,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03224r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03224r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03224c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03224c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR13023" sboTerm="SBO:0000185" id="MAR13023" name="FVSitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR13023" sboTerm="SBO:0000185" id="R_MAR13023" name="FVSitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -501109,7 +500097,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR13023">
+            <rdf:Description rdf:about="#R_MAR13023">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/FVSitr"/>
@@ -501120,13 +500108,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03579c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03579c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03579r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03579r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR13024" sboTerm="SBO:0000185" id="MAR13024" name="AM1CSAitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR13024" sboTerm="SBO:0000185" id="R_MAR13024" name="AM1CSAitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -501134,7 +500122,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR13024">
+            <rdf:Description rdf:about="#R_MAR13024">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/AM1CSAitr"/>
@@ -501145,13 +500133,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03429r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03429r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03429c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03429c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR13025" sboTerm="SBO:0000185" id="MAR13025" name="AM9CSAitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR13025" sboTerm="SBO:0000185" id="R_MAR13025" name="AM9CSAitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -501159,7 +500147,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR13025">
+            <rdf:Description rdf:about="#R_MAR13025">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/AM9CSAitr"/>
@@ -501170,13 +500158,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03432r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03432r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03432c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03432c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR13026" sboTerm="SBO:0000185" id="MAR13026" name="2HATVACIDitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR13026" sboTerm="SBO:0000185" id="R_MAR13026" name="2HATVACIDitr" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -501184,7 +500172,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR13026">
+            <rdf:Description rdf:about="#R_MAR13026">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/2HATVACIDitr"/>
@@ -501195,13 +500183,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03177r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03177r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03177c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03177c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR13027" sboTerm="SBO:0000185" id="MAR13027" name="Chloride Hydroxide Mitochondrial Transport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR13027" sboTerm="SBO:0000185" id="R_MAR13027" name="Chloride Hydroxide Mitochondrial Transport" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -501209,7 +500197,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR13027">
+            <rdf:Description rdf:about="#R_MAR13027">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/OHCLtm"/>
@@ -501219,15 +500207,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02147c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01442m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02147c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01442m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01442c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02147m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01442c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02147m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR13028" sboTerm="SBO:0000185" id="MAR13028" name="1A25HVITD2t" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR13028" sboTerm="SBO:0000185" id="R_MAR13028" name="1A25HVITD2t" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -501235,7 +500223,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR13028">
+            <rdf:Description rdf:about="#R_MAR13028">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/1A25HVITD2t"/>
@@ -501246,13 +500234,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00519c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00519e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR13029" sboTerm="SBO:0000185" id="MAR13029" name="1A25HVITD2tm" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR13029" sboTerm="SBO:0000185" id="R_MAR13029" name="1A25HVITD2tm" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -501260,7 +500248,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR13029">
+            <rdf:Description rdf:about="#R_MAR13029">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/1A25HVITD2tm"/>
@@ -501271,13 +500259,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00519m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00519m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00519c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00519c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR13030" sboTerm="SBO:0000627" id="MAR13030" name="EX_1a25dhvitd2(e)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR13030" sboTerm="SBO:0000627" id="R_MAR13030" name="EX_1a25dhvitd2(e)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -501285,7 +500273,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR13030">
+            <rdf:Description rdf:about="#R_MAR13030">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_1a25dhvitd2_e"/>
@@ -501296,10 +500284,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00519e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00519e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR13031" sboTerm="SBO:0000627" id="MAR13031" name="EX_C13856[e]" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR13031" sboTerm="SBO:0000627" id="R_MAR13031" name="EX_C13856[e]" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -501307,7 +500295,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR13031">
+            <rdf:Description rdf:about="#R_MAR13031">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_C13856_e"/>
@@ -501318,10 +500306,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00635e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00635e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR13032" sboTerm="SBO:0000627" id="MAR13032" name="EX_M02956[e]" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR13032" sboTerm="SBO:0000627" id="R_MAR13032" name="EX_M02956[e]" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -501329,7 +500317,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR13032">
+            <rdf:Description rdf:about="#R_MAR13032">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_M02956_e"/>
@@ -501340,10 +500328,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02956e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02956e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR13033" sboTerm="SBO:0000627" id="MAR13033" name="EX_M00234[e]" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR13033" sboTerm="SBO:0000627" id="R_MAR13033" name="EX_M00234[e]" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -501351,7 +500339,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR13033">
+            <rdf:Description rdf:about="#R_MAR13033">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_M00234_e"/>
@@ -501362,10 +500350,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00234e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00234e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR13034" sboTerm="SBO:0000627" id="MAR13034" name="EX_M01807[e]" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR13034" sboTerm="SBO:0000627" id="R_MAR13034" name="EX_M01807[e]" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -501373,7 +500361,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR13034">
+            <rdf:Description rdf:about="#R_MAR13034">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_M01807_e"/>
@@ -501384,10 +500372,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01807e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01807e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR13035" sboTerm="SBO:0000627" id="MAR13035" name="EX_M00503[e]" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR13035" sboTerm="SBO:0000627" id="R_MAR13035" name="EX_M00503[e]" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -501395,7 +500383,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR13035">
+            <rdf:Description rdf:about="#R_MAR13035">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_M00503_e"/>
@@ -501406,10 +500394,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00503e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00503e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR13036" sboTerm="SBO:0000627" id="MAR13036" name="EX_M00241[e]" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR13036" sboTerm="SBO:0000627" id="R_MAR13036" name="EX_M00241[e]" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -501417,7 +500405,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR13036">
+            <rdf:Description rdf:about="#R_MAR13036">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_M00241_e"/>
@@ -501428,10 +500416,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00241e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00241e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR13037" sboTerm="SBO:0000627" id="MAR13037" name="EX_M01820[e]" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR13037" sboTerm="SBO:0000627" id="R_MAR13037" name="EX_M01820[e]" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -501439,7 +500427,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR13037">
+            <rdf:Description rdf:about="#R_MAR13037">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_M01820_e"/>
@@ -501450,10 +500438,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01820e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01820e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR13038" sboTerm="SBO:0000627" id="MAR13038" name="EX_M00510[e]" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR13038" sboTerm="SBO:0000627" id="R_MAR13038" name="EX_M00510[e]" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -501461,7 +500449,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR13038">
+            <rdf:Description rdf:about="#R_MAR13038">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_M00510_e"/>
@@ -501472,10 +500460,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00510e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00510e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR13039" sboTerm="SBO:0000627" id="MAR13039" name="EX_M01819[e]" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR13039" sboTerm="SBO:0000627" id="R_MAR13039" name="EX_M01819[e]" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -501483,7 +500471,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR13039">
+            <rdf:Description rdf:about="#R_MAR13039">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/EX_M01819[e]"/>
@@ -501493,10 +500481,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01819e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01819e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR13040" sboTerm="SBO:0000627" id="MAR13040" name="EX_M00003[e]" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR13040" sboTerm="SBO:0000627" id="R_MAR13040" name="EX_M00003[e]" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -501504,7 +500492,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR13040">
+            <rdf:Description rdf:about="#R_MAR13040">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_M00003_e"/>
@@ -501515,10 +500503,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00003e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00003e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR13041" sboTerm="SBO:0000627" id="MAR13041" name="EX_M00008[e]" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR13041" sboTerm="SBO:0000627" id="R_MAR13041" name="EX_M00008[e]" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -501526,7 +500514,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR13041">
+            <rdf:Description rdf:about="#R_MAR13041">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_M00008_e"/>
@@ -501537,10 +500525,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00008e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00008e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR13042" sboTerm="SBO:0000627" id="MAR13042" name="EX_M00010[e]" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR13042" sboTerm="SBO:0000627" id="R_MAR13042" name="EX_M00010[e]" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -501548,7 +500536,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR13042">
+            <rdf:Description rdf:about="#R_MAR13042">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_M00010_e"/>
@@ -501559,10 +500547,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00010e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00010e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR13043" sboTerm="SBO:0000627" id="MAR13043" name="EX_M00017[e]" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR13043" sboTerm="SBO:0000627" id="R_MAR13043" name="EX_M00017[e]" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -501570,7 +500558,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR13043">
+            <rdf:Description rdf:about="#R_MAR13043">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_M00017_e"/>
@@ -501581,10 +500569,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00017e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00017e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR13044" sboTerm="SBO:0000627" id="MAR13044" name="EX_M00019[e]" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR13044" sboTerm="SBO:0000627" id="R_MAR13044" name="EX_M00019[e]" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -501592,7 +500580,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR13044">
+            <rdf:Description rdf:about="#R_MAR13044">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_M00019_e"/>
@@ -501603,10 +500591,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00019e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00019e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR13045" sboTerm="SBO:0000627" id="MAR13045" name="EX_M00021[e]" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR13045" sboTerm="SBO:0000627" id="R_MAR13045" name="EX_M00021[e]" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -501614,7 +500602,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR13045">
+            <rdf:Description rdf:about="#R_MAR13045">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_M00021_e"/>
@@ -501625,10 +500613,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00021e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00021e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR13046" sboTerm="SBO:0000627" id="MAR13046" name="EX_M00115[e]" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR13046" sboTerm="SBO:0000627" id="R_MAR13046" name="EX_M00115[e]" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -501636,7 +500624,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR13046">
+            <rdf:Description rdf:about="#R_MAR13046">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_M00115_e"/>
@@ -501647,10 +500635,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00115e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00115e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR13047" sboTerm="SBO:0000627" id="MAR13047" name="EX_M00117[e]" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR13047" sboTerm="SBO:0000627" id="R_MAR13047" name="EX_M00117[e]" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -501658,7 +500646,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR13047">
+            <rdf:Description rdf:about="#R_MAR13047">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_M00117_e"/>
@@ -501669,10 +500657,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00117e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00117e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR13048" sboTerm="SBO:0000627" id="MAR13048" name="EX_M00260[e]" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR13048" sboTerm="SBO:0000627" id="R_MAR13048" name="EX_M00260[e]" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -501680,7 +500668,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR13048">
+            <rdf:Description rdf:about="#R_MAR13048">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_M00260_e"/>
@@ -501691,10 +500679,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00260e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00260e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR13049" sboTerm="SBO:0000627" id="MAR13049" name="EX_M00265[e]" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR13049" sboTerm="SBO:0000627" id="R_MAR13049" name="EX_M00265[e]" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -501702,7 +500690,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR13049">
+            <rdf:Description rdf:about="#R_MAR13049">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_M00265_e"/>
@@ -501713,10 +500701,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00265e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00265e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR13050" sboTerm="SBO:0000627" id="MAR13050" name="EX_M00315[e]" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR13050" sboTerm="SBO:0000627" id="R_MAR13050" name="EX_M00315[e]" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -501724,7 +500712,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR13050">
+            <rdf:Description rdf:about="#R_MAR13050">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_M00315_e"/>
@@ -501735,10 +500723,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00315e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00315e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR13051" sboTerm="SBO:0000627" id="MAR13051" name="EX_M00341[e]" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR13051" sboTerm="SBO:0000627" id="R_MAR13051" name="EX_M00341[e]" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -501746,7 +500734,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR13051">
+            <rdf:Description rdf:about="#R_MAR13051">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_M00341_e"/>
@@ -501757,10 +500745,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00341e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00341e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR13052" sboTerm="SBO:0000627" id="MAR13052" name="EX_M01197[e]" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR13052" sboTerm="SBO:0000627" id="R_MAR13052" name="EX_M01197[e]" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -501768,7 +500756,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR13052">
+            <rdf:Description rdf:about="#R_MAR13052">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_M01197_e"/>
@@ -501779,10 +500767,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01197e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01197e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR13053" sboTerm="SBO:0000627" id="MAR13053" name="EX_M01207[e]" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR13053" sboTerm="SBO:0000627" id="R_MAR13053" name="EX_M01207[e]" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -501790,7 +500778,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR13053">
+            <rdf:Description rdf:about="#R_MAR13053">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_M01207_e"/>
@@ -501801,10 +500789,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01207e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01207e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR13054" sboTerm="SBO:0000627" id="MAR13054" name="EX_M01235[e]" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR13054" sboTerm="SBO:0000627" id="R_MAR13054" name="EX_M01235[e]" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -501812,7 +500800,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR13054">
+            <rdf:Description rdf:about="#R_MAR13054">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_M01235_e"/>
@@ -501823,10 +500811,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01235e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01235e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR13055" sboTerm="SBO:0000627" id="MAR13055" name="EX_M01238[e]" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR13055" sboTerm="SBO:0000627" id="R_MAR13055" name="EX_M01238[e]" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -501834,7 +500822,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR13055">
+            <rdf:Description rdf:about="#R_MAR13055">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_M01238_e"/>
@@ -501845,10 +500833,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01238e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01238e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR13056" sboTerm="SBO:0000627" id="MAR13056" name="EX_M01582[e]" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR13056" sboTerm="SBO:0000627" id="R_MAR13056" name="EX_M01582[e]" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -501856,7 +500844,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR13056">
+            <rdf:Description rdf:about="#R_MAR13056">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_M01582_e"/>
@@ -501867,10 +500855,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01582e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01582e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR13057" sboTerm="SBO:0000627" id="MAR13057" name="EX_M02053[e]" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR13057" sboTerm="SBO:0000627" id="R_MAR13057" name="EX_M02053[e]" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -501878,7 +500866,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR13057">
+            <rdf:Description rdf:about="#R_MAR13057">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_M02053_e"/>
@@ -501889,10 +500877,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02053e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02053e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR13058" sboTerm="SBO:0000627" id="MAR13058" name="EX_M02457[e]" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR13058" sboTerm="SBO:0000627" id="R_MAR13058" name="EX_M02457[e]" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -501900,7 +500888,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR13058">
+            <rdf:Description rdf:about="#R_MAR13058">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_M02457_e"/>
@@ -501911,10 +500899,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02457e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02457e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR13059" sboTerm="SBO:0000627" id="MAR13059" name="EX_M02613[e]" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR13059" sboTerm="SBO:0000627" id="R_MAR13059" name="EX_M02613[e]" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -501922,7 +500910,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR13059">
+            <rdf:Description rdf:about="#R_MAR13059">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_M02613_e"/>
@@ -501933,10 +500921,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02613e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02613e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR13060" sboTerm="SBO:0000627" id="MAR13060" name="EX_M02745[e]" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR13060" sboTerm="SBO:0000627" id="R_MAR13060" name="EX_M02745[e]" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -501944,7 +500932,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR13060">
+            <rdf:Description rdf:about="#R_MAR13060">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_M02745_e"/>
@@ -501955,10 +500943,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02745e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02745e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR13061" sboTerm="SBO:0000627" id="MAR13061" name="EX_M03045[e]" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR13061" sboTerm="SBO:0000627" id="R_MAR13061" name="EX_M03045[e]" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -501966,7 +500954,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR13061">
+            <rdf:Description rdf:about="#R_MAR13061">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_M03045_e"/>
@@ -501977,10 +500965,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03045e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03045e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR13062" sboTerm="SBO:0000627" id="MAR13062" name="EX_M03051[e]" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR13062" sboTerm="SBO:0000627" id="R_MAR13062" name="EX_M03051[e]" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -501988,7 +500976,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR13062">
+            <rdf:Description rdf:about="#R_MAR13062">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_M03051_e"/>
@@ -501999,10 +500987,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03051e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03051e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR13063" sboTerm="SBO:0000627" id="MAR13063" name="EX_M03153[e]" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR13063" sboTerm="SBO:0000627" id="R_MAR13063" name="EX_M03153[e]" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -502010,7 +500998,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR13063">
+            <rdf:Description rdf:about="#R_MAR13063">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_M03153_e"/>
@@ -502021,10 +501009,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03153e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03153e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR13064" sboTerm="SBO:0000627" id="MAR13064" name="EX_M01268[e]" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR13064" sboTerm="SBO:0000627" id="R_MAR13064" name="EX_M01268[e]" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -502032,7 +501020,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR13064">
+            <rdf:Description rdf:about="#R_MAR13064">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/EX_M01268[e]"/>
@@ -502042,10 +501030,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01268e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01268e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR13065" sboTerm="SBO:0000627" id="MAR13065" name="EX_HC02080[e]" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR13065" sboTerm="SBO:0000627" id="R_MAR13065" name="EX_HC02080[e]" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -502053,7 +501041,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR13065">
+            <rdf:Description rdf:about="#R_MAR13065">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/EX_HC02080[e]"/>
@@ -502063,10 +501051,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01395e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01395e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR13066" sboTerm="SBO:0000627" id="MAR13066" name="EX_h2co3[e]" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR13066" sboTerm="SBO:0000627" id="R_MAR13066" name="EX_h2co3[e]" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -502074,7 +501062,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR13066">
+            <rdf:Description rdf:about="#R_MAR13066">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_h2co3_e"/>
@@ -502086,10 +501074,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01421e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01421e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR13067" sboTerm="SBO:0000627" id="MAR13067" name="EX_M02837[e]" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR13067" sboTerm="SBO:0000627" id="R_MAR13067" name="EX_M02837[e]" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -502097,7 +501085,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR13067">
+            <rdf:Description rdf:about="#R_MAR13067">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/EX_M02837_e"/>
@@ -502108,10 +501096,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02837e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02837e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR13068" sboTerm="SBO:0000627" id="MAR13068" name="EX_M02382[e]" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR13068" sboTerm="SBO:0000627" id="R_MAR13068" name="EX_M02382[e]" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -502119,7 +501107,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR13068">
+            <rdf:Description rdf:about="#R_MAR13068">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/EX_M02382[e]"/>
@@ -502129,10 +501117,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02382e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02382e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR13069" sboTerm="SBO:0000627" id="MAR13069" name="EX_M02035[e]" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR13069" sboTerm="SBO:0000627" id="R_MAR13069" name="EX_M02035[e]" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -502140,7 +501128,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR13069">
+            <rdf:Description rdf:about="#R_MAR13069">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/EX_M02035[e]"/>
@@ -502150,10 +501138,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02035e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02035e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR13070" sboTerm="SBO:0000627" id="MAR13070" name="EX_M02467[e]" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR13070" sboTerm="SBO:0000627" id="R_MAR13070" name="EX_M02467[e]" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -502161,7 +501149,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR13070">
+            <rdf:Description rdf:about="#R_MAR13070">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/EX_M02467[e]"/>
@@ -502171,10 +501159,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02467e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02467e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR13071" sboTerm="SBO:0000627" id="MAR13071" name="EX_M02821[e]" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR13071" sboTerm="SBO:0000627" id="R_MAR13071" name="EX_M02821[e]" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -502182,7 +501170,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR13071">
+            <rdf:Description rdf:about="#R_MAR13071">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/EX_M02821[e]"/>
@@ -502192,10 +501180,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02821e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02821e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR13072" sboTerm="SBO:0000627" id="MAR13072" name="EX_mg2[e]" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR13072" sboTerm="SBO:0000627" id="R_MAR13072" name="EX_mg2[e]" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -502203,7 +501191,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR13072">
+            <rdf:Description rdf:about="#R_MAR13072">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/EX_mg2[e]"/>
@@ -502213,10 +501201,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02482e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02482e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR13073" sboTerm="SBO:0000627" id="MAR13073" name="EX_cu2[e]" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR13073" sboTerm="SBO:0000627" id="R_MAR13073" name="EX_cu2[e]" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -502224,7 +501212,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR13073">
+            <rdf:Description rdf:about="#R_MAR13073">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/EX_cu2[e]"/>
@@ -502234,10 +501222,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01624e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01624e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR13074" sboTerm="SBO:0000627" id="MAR13074" name="EX_M01571[e]" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR13074" sboTerm="SBO:0000627" id="R_MAR13074" name="EX_M01571[e]" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -502245,7 +501233,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR13074">
+            <rdf:Description rdf:about="#R_MAR13074">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/EX_M01571[e]"/>
@@ -502255,10 +501243,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01571e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01571e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR13075" sboTerm="SBO:0000185" id="MAR13075" name="DCMPtm" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR13075" sboTerm="SBO:0000185" id="R_MAR13075" name="DCMPtm" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -502266,7 +501254,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR13075">
+            <rdf:Description rdf:about="#R_MAR13075">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/DCMPtm"/>
@@ -502277,13 +501265,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01644m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01644m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01644c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01644c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR13076" sboTerm="SBO:0000185" id="MAR13076" name="GLACtm" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR13076" sboTerm="SBO:0000185" id="R_MAR13076" name="GLACtm" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -502291,7 +501279,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR13076">
+            <rdf:Description rdf:about="#R_MAR13076">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/GLACtm"/>
@@ -502301,13 +501289,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01685c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01685c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01685m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01685m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR13077" sboTerm="SBO:0000185" id="MAR13077" name="CLCFTRtm" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR13077" sboTerm="SBO:0000185" id="R_MAR13077" name="CLCFTRtm" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -502315,7 +501303,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR13077">
+            <rdf:Description rdf:about="#R_MAR13077">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/CLCFTRtm"/>
@@ -502327,13 +501315,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01442c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01442c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01442m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01442m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR13078" sboTerm="SBO:0000176" id="MAR13078" name="PROTEIN_BS" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR13078" sboTerm="SBO:0000176" id="R_MAR13078" name="PROTEIN_BS" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -502341,7 +501329,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR13078">
+            <rdf:Description rdf:about="#R_MAR13078">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/PROTEIN_BS"/>
@@ -502352,32 +501340,32 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01307c" stoichiometry="0.6" constant="true"/>
-          <speciesReference species="MAM01365c" stoichiometry="0.377" constant="true"/>
-          <speciesReference species="MAM01369c" stoichiometry="0.2881" constant="true"/>
-          <speciesReference species="MAM01370c" stoichiometry="0.359" constant="true"/>
-          <speciesReference species="MAM01628c" stoichiometry="0.145" constant="true"/>
-          <speciesReference species="MAM01974c" stoichiometry="0.386" constant="true"/>
-          <speciesReference species="MAM01975c" stoichiometry="0.322" constant="true"/>
-          <speciesReference species="MAM01986c" stoichiometry="0.538" constant="true"/>
-          <speciesReference species="MAM02125c" stoichiometry="0.143" constant="true"/>
-          <speciesReference species="MAM02184c" stoichiometry="0.324" constant="true"/>
-          <speciesReference species="MAM02360c" stoichiometry="0.564" constant="true"/>
-          <speciesReference species="MAM02426c" stoichiometry="0.57" constant="true"/>
-          <speciesReference species="MAM02471c" stoichiometry="0.138" constant="true"/>
-          <speciesReference species="MAM02724c" stoichiometry="0.219" constant="true"/>
-          <speciesReference species="MAM02770c" stoichiometry="0.313" constant="true"/>
-          <speciesReference species="MAM02896c" stoichiometry="0.43" constant="true"/>
-          <speciesReference species="MAM02993c" stoichiometry="0.386" constant="true"/>
-          <speciesReference species="MAM03089c" stoichiometry="0.044" constant="true"/>
-          <speciesReference species="MAM03101c" stoichiometry="0.182" constant="true"/>
-          <speciesReference species="MAM03135c" stoichiometry="0.416" constant="true"/>
+          <speciesReference species="M_MAM01307c" stoichiometry="0.6" constant="true"/>
+          <speciesReference species="M_MAM01365c" stoichiometry="0.377" constant="true"/>
+          <speciesReference species="M_MAM01369c" stoichiometry="0.2881" constant="true"/>
+          <speciesReference species="M_MAM01370c" stoichiometry="0.359" constant="true"/>
+          <speciesReference species="M_MAM01628c" stoichiometry="0.145" constant="true"/>
+          <speciesReference species="M_MAM01974c" stoichiometry="0.386" constant="true"/>
+          <speciesReference species="M_MAM01975c" stoichiometry="0.322" constant="true"/>
+          <speciesReference species="M_MAM01986c" stoichiometry="0.538" constant="true"/>
+          <speciesReference species="M_MAM02125c" stoichiometry="0.143" constant="true"/>
+          <speciesReference species="M_MAM02184c" stoichiometry="0.324" constant="true"/>
+          <speciesReference species="M_MAM02360c" stoichiometry="0.564" constant="true"/>
+          <speciesReference species="M_MAM02426c" stoichiometry="0.57" constant="true"/>
+          <speciesReference species="M_MAM02471c" stoichiometry="0.138" constant="true"/>
+          <speciesReference species="M_MAM02724c" stoichiometry="0.219" constant="true"/>
+          <speciesReference species="M_MAM02770c" stoichiometry="0.313" constant="true"/>
+          <speciesReference species="M_MAM02896c" stoichiometry="0.43" constant="true"/>
+          <speciesReference species="M_MAM02993c" stoichiometry="0.386" constant="true"/>
+          <speciesReference species="M_MAM03089c" stoichiometry="0.044" constant="true"/>
+          <speciesReference species="M_MAM03101c" stoichiometry="0.182" constant="true"/>
+          <speciesReference species="M_MAM03135c" stoichiometry="0.416" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00196c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00196c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR13079" sboTerm="SBO:0000185" id="MAR13079" name="PIt2mi" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR13079" sboTerm="SBO:0000185" id="R_MAR13079" name="PIt2mi" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -502385,7 +501373,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR13079">
+            <rdf:Description rdf:about="#R_MAR13079">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/PIt2mi"/>
@@ -502395,12 +501383,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039i" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751i" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039i" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751i" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -502409,7 +501397,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR13080" sboTerm="SBO:0000185" id="MAR13080" name="Htmi" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR13080" sboTerm="SBO:0000185" id="R_MAR13080" name="Htmi" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -502417,7 +501405,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR13080">
+            <rdf:Description rdf:about="#R_MAR13080">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/Htmi"/>
@@ -502429,10 +501417,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039i" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039i" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -502441,7 +501429,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR13081" sboTerm="SBO:0000185" id="MAR13081" name="CYOOm3i" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR13081" sboTerm="SBO:0000185" id="R_MAR13081" name="CYOOm3i" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 2</p>
@@ -502449,7 +501437,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR13081">
+            <rdf:Description rdf:about="#R_MAR13081">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CYOOm3i"/>
@@ -502460,18 +501448,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01826m" stoichiometry="4" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="7.92" constant="true"/>
-          <speciesReference species="MAM02630m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01826m" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="7.92" constant="true"/>
+          <speciesReference species="M_MAM02630m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01824m" stoichiometry="4" constant="true"/>
-          <speciesReference species="MAM02040m" stoichiometry="1.96" constant="true"/>
-          <speciesReference species="MAM02631m" stoichiometry="0.02" constant="true"/>
-          <speciesReference species="MAM02039i" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM01824m" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM02040m" stoichiometry="1.96" constant="true"/>
+          <speciesReference species="M_MAM02631m" stoichiometry="0.02" constant="true"/>
+          <speciesReference species="M_MAM02039i" stoichiometry="4" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10023" sboTerm="SBO:0000185" id="MAR10023" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10023" sboTerm="SBO:0000185" id="R_MAR10023" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -502479,7 +501467,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#meta_MAR10023">
+            <rdf:Description rdf:about="#meta_R_MAR10023">
               <bqbiol:is>
                 <rdf:Bag/>
               </bqbiol:is>
@@ -502487,13 +501475,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03970c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03970c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03971e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03971e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10024" sboTerm="SBO:0000627" id="MAR10024" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10024" sboTerm="SBO:0000627" id="R_MAR10024" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -502501,7 +501489,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#meta_MAR10024">
+            <rdf:Description rdf:about="#meta_R_MAR10024">
               <bqbiol:is>
                 <rdf:Bag/>
               </bqbiol:is>
@@ -502509,10 +501497,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03971e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03971e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10025" sboTerm="SBO:0000627" id="MAR10025" name="Exchange of 20-hydroxy-arachidonate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10025" sboTerm="SBO:0000627" id="R_MAR10025" name="Exchange of 20-hydroxy-arachidonate" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -502520,7 +501508,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#meta_MAR10025">
+            <rdf:Description rdf:about="#meta_R_MAR10025">
               <bqbiol:is>
                 <rdf:Bag/>
               </bqbiol:is>
@@ -502528,10 +501516,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00591e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00591e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10026" sboTerm="SBO:0000627" id="MAR10026" name="Exchange of chenodiol" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10026" sboTerm="SBO:0000627" id="R_MAR10026" name="Exchange of chenodiol" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -502539,7 +501527,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#meta_MAR10026">
+            <rdf:Description rdf:about="#meta_R_MAR10026">
               <bqbiol:is>
                 <rdf:Bag/>
               </bqbiol:is>
@@ -502547,10 +501535,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01435e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01435e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10027" sboTerm="SBO:0000627" id="MAR10027" name="Exchange of LacCer pool" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10027" sboTerm="SBO:0000627" id="R_MAR10027" name="Exchange of LacCer pool" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -502558,7 +501546,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#meta_MAR10027">
+            <rdf:Description rdf:about="#meta_R_MAR10027">
               <bqbiol:is>
                 <rdf:Bag/>
               </bqbiol:is>
@@ -502566,10 +501554,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02328e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02328e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10028" sboTerm="SBO:0000627" id="MAR10028" name="Exchange of Chylomicron Lipoprotein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10028" sboTerm="SBO:0000627" id="R_MAR10028" name="Exchange of Chylomicron Lipoprotein" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -502577,7 +501565,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#meta_MAR10028">
+            <rdf:Description rdf:about="#meta_R_MAR10028">
               <bqbiol:is>
                 <rdf:Bag/>
               </bqbiol:is>
@@ -502585,10 +501573,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03511e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03511e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10029" sboTerm="SBO:0000627" id="MAR10029" name="Exchange of steroids" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10029" sboTerm="SBO:0000627" id="R_MAR10029" name="Exchange of steroids" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -502596,7 +501584,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#meta_MAR10029">
+            <rdf:Description rdf:about="#meta_R_MAR10029">
               <bqbiol:is>
                 <rdf:Bag/>
               </bqbiol:is>
@@ -502604,10 +501592,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM10001e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM10001e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10030" sboTerm="SBO:0000627" id="MAR10030" name="Exchange of xenobiotics" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10030" sboTerm="SBO:0000627" id="R_MAR10030" name="Exchange of xenobiotics" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -502615,7 +501603,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#meta_MAR10030">
+            <rdf:Description rdf:about="#meta_R_MAR10030">
               <bqbiol:is>
                 <rdf:Bag/>
               </bqbiol:is>
@@ -502623,10 +501611,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM10002e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM10002e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10031" sboTerm="SBO:0000627" id="MAR10031" name="Exchange of arachidonate derivatives" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10031" sboTerm="SBO:0000627" id="R_MAR10031" name="Exchange of arachidonate derivatives" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -502634,7 +501622,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#meta_MAR10031">
+            <rdf:Description rdf:about="#meta_R_MAR10031">
               <bqbiol:is>
                 <rdf:Bag/>
               </bqbiol:is>
@@ -502642,10 +501630,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM10003e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM10003e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10033" sboTerm="SBO:0000176" id="MAR10033" name="Fatty acid pool formation and breakdown" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10033" sboTerm="SBO:0000176" id="R_MAR10033" name="Fatty acid pool formation and breakdown" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -502653,7 +501641,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#meta_MAR10033">
+            <rdf:Description rdf:about="#meta_R_MAR10033">
               <bqbiol:is>
                 <rdf:Bag/>
               </bqbiol:is>
@@ -502661,71 +501649,71 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM10005c" stoichiometry="1" constant="true"/>
-        </listOfReactants>
-        <listOfProducts>
-          <speciesReference species="MAM00003c" stoichiometry="0.0004" constant="true"/>
-          <speciesReference species="MAM00008c" stoichiometry="0.0004" constant="true"/>
-          <speciesReference species="MAM00010c" stoichiometry="0.0004" constant="true"/>
-          <speciesReference species="MAM00017c" stoichiometry="0.0004" constant="true"/>
-          <speciesReference species="MAM00019c" stoichiometry="0.0004" constant="true"/>
-          <speciesReference species="MAM00021c" stoichiometry="0.0004" constant="true"/>
-          <speciesReference species="MAM00094c" stoichiometry="0.0038" constant="true"/>
-          <speciesReference species="MAM00104c" stoichiometry="0.0004" constant="true"/>
-          <speciesReference species="MAM00111c" stoichiometry="0.0004" constant="true"/>
-          <speciesReference species="MAM00114c" stoichiometry="0.0004" constant="true"/>
-          <speciesReference species="MAM00115c" stoichiometry="0.0004" constant="true"/>
-          <speciesReference species="MAM00117c" stoichiometry="0.0004" constant="true"/>
-          <speciesReference species="MAM00128c" stoichiometry="0.0004" constant="true"/>
-          <speciesReference species="MAM00132c" stoichiometry="0.0004" constant="true"/>
-          <speciesReference species="MAM00135c" stoichiometry="0.0004" constant="true"/>
-          <speciesReference species="MAM00260c" stoichiometry="0.0004" constant="true"/>
-          <speciesReference species="MAM00265c" stoichiometry="0.0004" constant="true"/>
-          <speciesReference species="MAM00315c" stoichiometry="0.0004" constant="true"/>
-          <speciesReference species="MAM00341c" stoichiometry="0.0004" constant="true"/>
-          <speciesReference species="MAM01197c" stoichiometry="0.0004" constant="true"/>
-          <speciesReference species="MAM01207c" stoichiometry="0.0004" constant="true"/>
-          <speciesReference species="MAM01235c" stoichiometry="0.0004" constant="true"/>
-          <speciesReference species="MAM01238c" stoichiometry="0.0004" constant="true"/>
-          <speciesReference species="MAM01291c" stoichiometry="0.0014" constant="true"/>
-          <speciesReference species="MAM01362c" stoichiometry="0.1083" constant="true"/>
-          <speciesReference species="MAM01373c" stoichiometry="0.0004" constant="true"/>
-          <speciesReference species="MAM01432c" stoichiometry="0.0004" constant="true"/>
-          <speciesReference species="MAM01582c" stoichiometry="0.0004" constant="true"/>
-          <speciesReference species="MAM01583c" stoichiometry="0.0004" constant="true"/>
-          <speciesReference species="MAM01584c" stoichiometry="0.0004" constant="true"/>
-          <speciesReference species="MAM01585c" stoichiometry="0.025" constant="true"/>
-          <speciesReference species="MAM01689c" stoichiometry="0.0278" constant="true"/>
-          <speciesReference species="MAM01696c" stoichiometry="0.0215" constant="true"/>
-          <speciesReference species="MAM01741c" stoichiometry="0.0059" constant="true"/>
-          <speciesReference species="MAM01771c" stoichiometry="0.0004" constant="true"/>
-          <speciesReference species="MAM01778c" stoichiometry="0.0004" constant="true"/>
-          <speciesReference species="MAM01784c" stoichiometry="0.0116" constant="true"/>
-          <speciesReference species="MAM01932c" stoichiometry="0.0029" constant="true"/>
-          <speciesReference species="MAM02053c" stoichiometry="0.0004" constant="true"/>
-          <speciesReference species="MAM02344c" stoichiometry="0.0004" constant="true"/>
-          <speciesReference species="MAM02385c" stoichiometry="0.0004" constant="true"/>
-          <speciesReference species="MAM02387c" stoichiometry="0.1915" constant="true"/>
-          <speciesReference species="MAM02389c" stoichiometry="0.0084" constant="true"/>
-          <speciesReference species="MAM02456c" stoichiometry="0.0004" constant="true"/>
-          <speciesReference species="MAM02457c" stoichiometry="0.0004" constant="true"/>
-          <speciesReference species="MAM02494c" stoichiometry="0.0133" constant="true"/>
-          <speciesReference species="MAM02564c" stoichiometry="0.0004" constant="true"/>
-          <speciesReference species="MAM02613c" stoichiometry="0.0004" constant="true"/>
-          <speciesReference species="MAM02646c" stoichiometry="0.1545" constant="true"/>
-          <speciesReference species="MAM02648c" stoichiometry="0.0115" constant="true"/>
-          <speciesReference species="MAM02674c" stoichiometry="0.222" constant="true"/>
-          <speciesReference species="MAM02675c" stoichiometry="0.0219" constant="true"/>
-          <speciesReference species="MAM02690c" stoichiometry="0.0004" constant="true"/>
-          <speciesReference species="MAM02745c" stoichiometry="0.0004" constant="true"/>
-          <speciesReference species="MAM02938c" stoichiometry="0.1498" constant="true"/>
-          <speciesReference species="MAM02939c" stoichiometry="0.0025" constant="true"/>
-          <speciesReference species="MAM03045c" stoichiometry="0.0004" constant="true"/>
-          <speciesReference species="MAM03051c" stoichiometry="0.0004" constant="true"/>
-          <speciesReference species="MAM03153c" stoichiometry="0.0004" constant="true"/>
-        </listOfProducts>
-      </reaction>
-      <reaction metaid="MAR10034" sboTerm="SBO:0000176" id="MAR10034" name="Fatty acid pool formation and breakdown" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+          <speciesReference species="M_MAM10005c" stoichiometry="1" constant="true"/>
+        </listOfReactants>
+        <listOfProducts>
+          <speciesReference species="M_MAM00003c" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM00008c" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM00010c" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM00017c" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM00019c" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM00021c" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM00094c" stoichiometry="0.0038" constant="true"/>
+          <speciesReference species="M_MAM00104c" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM00111c" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM00114c" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM00115c" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM00117c" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM00128c" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM00132c" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM00135c" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM00260c" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM00265c" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM00315c" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM00341c" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM01197c" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM01207c" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM01235c" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM01238c" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM01291c" stoichiometry="0.0014" constant="true"/>
+          <speciesReference species="M_MAM01362c" stoichiometry="0.1083" constant="true"/>
+          <speciesReference species="M_MAM01373c" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM01432c" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM01582c" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM01583c" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM01584c" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM01585c" stoichiometry="0.025" constant="true"/>
+          <speciesReference species="M_MAM01689c" stoichiometry="0.0278" constant="true"/>
+          <speciesReference species="M_MAM01696c" stoichiometry="0.0215" constant="true"/>
+          <speciesReference species="M_MAM01741c" stoichiometry="0.0059" constant="true"/>
+          <speciesReference species="M_MAM01771c" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM01778c" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM01784c" stoichiometry="0.0116" constant="true"/>
+          <speciesReference species="M_MAM01932c" stoichiometry="0.0029" constant="true"/>
+          <speciesReference species="M_MAM02053c" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM02344c" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM02385c" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM02387c" stoichiometry="0.1915" constant="true"/>
+          <speciesReference species="M_MAM02389c" stoichiometry="0.0084" constant="true"/>
+          <speciesReference species="M_MAM02456c" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM02457c" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM02494c" stoichiometry="0.0133" constant="true"/>
+          <speciesReference species="M_MAM02564c" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM02613c" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM02646c" stoichiometry="0.1545" constant="true"/>
+          <speciesReference species="M_MAM02648c" stoichiometry="0.0115" constant="true"/>
+          <speciesReference species="M_MAM02674c" stoichiometry="0.222" constant="true"/>
+          <speciesReference species="M_MAM02675c" stoichiometry="0.0219" constant="true"/>
+          <speciesReference species="M_MAM02690c" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM02745c" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM02938c" stoichiometry="0.1498" constant="true"/>
+          <speciesReference species="M_MAM02939c" stoichiometry="0.0025" constant="true"/>
+          <speciesReference species="M_MAM03045c" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM03051c" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM03153c" stoichiometry="0.0004" constant="true"/>
+        </listOfProducts>
+      </reaction>
+      <reaction metaid="R_MAR10034" sboTerm="SBO:0000176" id="R_MAR10034" name="Fatty acid pool formation and breakdown" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -502733,7 +501721,7 @@
         </notes>
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-            <rdf:Description rdf:about="#meta_MAR10034">
+            <rdf:Description rdf:about="#meta_R_MAR10034">
               <bqbiol:is>
                 <rdf:Bag/>
               </bqbiol:is>
@@ -502741,71 +501729,71 @@
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-          <speciesReference species="MAM00003r" stoichiometry="0.0004" constant="true"/>
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-          <speciesReference species="MAM02674r" stoichiometry="0.222" constant="true"/>
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-          <speciesReference species="MAM03153r" stoichiometry="0.0004" constant="true"/>
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-      <reaction metaid="MAR10035" sboTerm="SBO:0000176" id="MAR10035" name="1-acylglycerol-3-phosphate pool formation and breakdown" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+          <speciesReference species="M_MAM10005r" stoichiometry="1" constant="true"/>
+        </listOfReactants>
+        <listOfProducts>
+          <speciesReference species="M_MAM00003r" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM00008r" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM00010r" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM00017r" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM00019r" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM00021r" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM00094r" stoichiometry="0.0038" constant="true"/>
+          <speciesReference species="M_MAM00104r" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM00111r" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM00114r" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM00115r" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM00117r" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM00128r" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM00132r" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM00135r" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM00260r" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM00265r" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM00315r" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM00341r" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM01197r" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM01207r" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM01235r" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM01238r" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM01291r" stoichiometry="0.0014" constant="true"/>
+          <speciesReference species="M_MAM01362r" stoichiometry="0.1083" constant="true"/>
+          <speciesReference species="M_MAM01373r" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM01432r" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM01582r" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM01583r" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM01584r" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM01585r" stoichiometry="0.025" constant="true"/>
+          <speciesReference species="M_MAM01689r" stoichiometry="0.0278" constant="true"/>
+          <speciesReference species="M_MAM01696r" stoichiometry="0.0215" constant="true"/>
+          <speciesReference species="M_MAM01741r" stoichiometry="0.0059" constant="true"/>
+          <speciesReference species="M_MAM01771r" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM01778r" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM01784r" stoichiometry="0.0116" constant="true"/>
+          <speciesReference species="M_MAM01932r" stoichiometry="0.0029" constant="true"/>
+          <speciesReference species="M_MAM02053r" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM02344r" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM02385r" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM02387r" stoichiometry="0.1915" constant="true"/>
+          <speciesReference species="M_MAM02389r" stoichiometry="0.0084" constant="true"/>
+          <speciesReference species="M_MAM02456r" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM02457r" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM02494r" stoichiometry="0.0133" constant="true"/>
+          <speciesReference species="M_MAM02564r" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM02613r" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM02646r" stoichiometry="0.1545" constant="true"/>
+          <speciesReference species="M_MAM02648r" stoichiometry="0.0115" constant="true"/>
+          <speciesReference species="M_MAM02674r" stoichiometry="0.222" constant="true"/>
+          <speciesReference species="M_MAM02675r" stoichiometry="0.0219" constant="true"/>
+          <speciesReference species="M_MAM02690r" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM02745r" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM02938r" stoichiometry="0.1498" constant="true"/>
+          <speciesReference species="M_MAM02939r" stoichiometry="0.0025" constant="true"/>
+          <speciesReference species="M_MAM03045r" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM03051r" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM03153r" stoichiometry="0.0004" constant="true"/>
+        </listOfProducts>
+      </reaction>
+      <reaction metaid="R_MAR10035" sboTerm="SBO:0000176" id="R_MAR10035" name="1-acylglycerol-3-phosphate pool formation and breakdown" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -502813,7 +501801,7 @@
         </notes>
         <annotation>
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-            <rdf:Description rdf:about="#meta_MAR10035">
+            <rdf:Description rdf:about="#meta_R_MAR10035">
               <bqbiol:is>
                 <rdf:Bag/>
               </bqbiol:is>
@@ -502821,71 +501809,71 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM10006c" stoichiometry="1" constant="true"/>
-        </listOfReactants>
-        <listOfProducts>
-          <speciesReference species="MAM00436c" stoichiometry="0.0004" constant="true"/>
-          <speciesReference species="MAM00437c" stoichiometry="0.0004" constant="true"/>
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-          <speciesReference species="MAM00439c" stoichiometry="0.0004" constant="true"/>
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-          <speciesReference species="MAM00441c" stoichiometry="0.0004" constant="true"/>
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-          <speciesReference species="MAM00454c" stoichiometry="0.0004" constant="true"/>
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-          <speciesReference species="MAM00469c" stoichiometry="0.0004" constant="true"/>
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-          <speciesReference species="MAM00494c" stoichiometry="0.0004" constant="true"/>
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-          <speciesReference species="MAM00501c" stoichiometry="0.0004" constant="true"/>
-          <speciesReference species="MAM00502c" stoichiometry="0.0004" constant="true"/>
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-      </reaction>
-      <reaction metaid="MAR10036" sboTerm="SBO:0000176" id="MAR10036" name="acyl-CoA pool formation and breakdown" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+          <speciesReference species="M_MAM10006c" stoichiometry="1" constant="true"/>
+        </listOfReactants>
+        <listOfProducts>
+          <speciesReference species="M_MAM00436c" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM00437c" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM00438c" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM00439c" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM00440c" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM00441c" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM00442c" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM00443c" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM00444c" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM00445c" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM00446c" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM00447c" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM00448c" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM00449c" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM00450c" stoichiometry="0.0278" constant="true"/>
+          <speciesReference species="M_MAM00451c" stoichiometry="0.0038" constant="true"/>
+          <speciesReference species="M_MAM00452c" stoichiometry="0.0116" constant="true"/>
+          <speciesReference species="M_MAM00453c" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM00454c" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM00455c" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM00456c" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM00457c" stoichiometry="0.0025" constant="true"/>
+          <speciesReference species="M_MAM00458c" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM00459c" stoichiometry="0.0059" constant="true"/>
+          <speciesReference species="M_MAM00460c" stoichiometry="0.0014" constant="true"/>
+          <speciesReference species="M_MAM00461c" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM00462c" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM00463c" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM00464c" stoichiometry="0.0115" constant="true"/>
+          <speciesReference species="M_MAM00465c" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM00466c" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM00467c" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM00468c" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM00469c" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM00470c" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM00471c" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM00472c" stoichiometry="0.1083" constant="true"/>
+          <speciesReference species="M_MAM00474c" stoichiometry="0.025" constant="true"/>
+          <speciesReference species="M_MAM00476c" stoichiometry="0.0215" constant="true"/>
+          <speciesReference species="M_MAM00477c" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM00478c" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM00479c" stoichiometry="0.0029" constant="true"/>
+          <speciesReference species="M_MAM00480c" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM00481c" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM00482c" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM00483c" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM00484c" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM00491c" stoichiometry="0.1915" constant="true"/>
+          <speciesReference species="M_MAM00492c" stoichiometry="0.0084" constant="true"/>
+          <speciesReference species="M_MAM00493c" stoichiometry="0.0133" constant="true"/>
+          <speciesReference species="M_MAM00494c" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM00495c" stoichiometry="0.1545" constant="true"/>
+          <speciesReference species="M_MAM00496c" stoichiometry="0.222" constant="true"/>
+          <speciesReference species="M_MAM00497c" stoichiometry="0.0219" constant="true"/>
+          <speciesReference species="M_MAM00498c" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM00499c" stoichiometry="0.1498" constant="true"/>
+          <speciesReference species="M_MAM00500c" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM00501c" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM00502c" stoichiometry="0.0004" constant="true"/>
+        </listOfProducts>
+      </reaction>
+      <reaction metaid="R_MAR10036" sboTerm="SBO:0000176" id="R_MAR10036" name="acyl-CoA pool formation and breakdown" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
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           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -502893,7 +501881,7 @@
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-            <rdf:Description rdf:about="#meta_MAR10036">
+            <rdf:Description rdf:about="#meta_R_MAR10036">
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@@ -502901,71 +501889,71 @@
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-      <reaction metaid="MAR10037" sboTerm="SBO:0000176" id="MAR10037" name="cholesterol-ester pool formation and breakdown" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+          <speciesReference species="M_MAM10007c" stoichiometry="1" constant="true"/>
+        </listOfReactants>
+        <listOfProducts>
+          <speciesReference species="M_MAM00004c" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM00006c" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM00007c" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM00009c" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM00012c" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM00016c" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM00018c" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM00020c" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM00023c" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM00025c" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM00093c" stoichiometry="0.0038" constant="true"/>
+          <speciesReference species="M_MAM00095c" stoichiometry="0.0278" constant="true"/>
+          <speciesReference species="M_MAM00101c" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM00103c" stoichiometry="0.0116" constant="true"/>
+          <speciesReference species="M_MAM00106c" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM00108c" stoichiometry="0.0025" constant="true"/>
+          <speciesReference species="M_MAM00110c" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM00113c" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM00116c" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM00118c" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM00119c" stoichiometry="0.0014" constant="true"/>
+          <speciesReference species="M_MAM00121c" stoichiometry="0.0059" constant="true"/>
+          <speciesReference species="M_MAM00123c" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM00125c" stoichiometry="0.0115" constant="true"/>
+          <speciesReference species="M_MAM00127c" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM00129c" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM00131c" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM00134c" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM00262c" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM00264c" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM00317c" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM00343c" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM01141c" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM01191c" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM01236c" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM01237c" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM01364c" stoichiometry="0.1083" constant="true"/>
+          <speciesReference species="M_MAM01586c" stoichiometry="0.025" constant="true"/>
+          <speciesReference species="M_MAM01697c" stoichiometry="0.0215" constant="true"/>
+          <speciesReference species="M_MAM01725c" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM01773c" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM01934c" stoichiometry="0.0029" constant="true"/>
+          <speciesReference species="M_MAM02052c" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM02101c" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM02110c" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM02112c" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM02345c" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM02390c" stoichiometry="0.0084" constant="true"/>
+          <speciesReference species="M_MAM02391c" stoichiometry="0.1915" constant="true"/>
+          <speciesReference species="M_MAM02495c" stoichiometry="0.0133" constant="true"/>
+          <speciesReference species="M_MAM02612c" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM02647c" stoichiometry="0.1545" constant="true"/>
+          <speciesReference species="M_MAM02677c" stoichiometry="0.0219" constant="true"/>
+          <speciesReference species="M_MAM02678c" stoichiometry="0.222" constant="true"/>
+          <speciesReference species="M_MAM02689c" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM02941c" stoichiometry="0.1498" constant="true"/>
+          <speciesReference species="M_MAM02971c" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM03047c" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM03050c" stoichiometry="0.0004" constant="true"/>
+        </listOfProducts>
+      </reaction>
+      <reaction metaid="R_MAR10037" sboTerm="SBO:0000176" id="R_MAR10037" name="cholesterol-ester pool formation and breakdown" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -502973,7 +501961,7 @@
         </notes>
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-            <rdf:Description rdf:about="#meta_MAR10037">
+            <rdf:Description rdf:about="#meta_R_MAR10037">
               <bqbiol:is>
                 <rdf:Bag/>
               </bqbiol:is>
@@ -502981,71 +501969,71 @@
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-      <reaction metaid="MAR10038" sboTerm="SBO:0000176" id="MAR10038" name="cholesterol-ester pool formation and breakdown" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+          <speciesReference species="M_MAM01451l" stoichiometry="1" constant="true"/>
+        </listOfReactants>
+        <listOfProducts>
+          <speciesReference species="M_MAM01452l" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM01453l" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM01454l" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM01455l" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM01456l" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM01457l" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM01458l" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM01459l" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM01460l" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM01461l" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM01462l" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM01463l" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM01464l" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM01465l" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM01466l" stoichiometry="0.0278" constant="true"/>
+          <speciesReference species="M_MAM01467l" stoichiometry="0.0038" constant="true"/>
+          <speciesReference species="M_MAM01468l" stoichiometry="0.0116" constant="true"/>
+          <speciesReference species="M_MAM01469l" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM01470l" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM01471l" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM01472l" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM01473l" stoichiometry="0.0025" constant="true"/>
+          <speciesReference species="M_MAM01474l" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM01475l" stoichiometry="0.0059" constant="true"/>
+          <speciesReference species="M_MAM01476l" stoichiometry="0.0014" constant="true"/>
+          <speciesReference species="M_MAM01477l" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM01478l" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM01479l" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM01480l" stoichiometry="0.0115" constant="true"/>
+          <speciesReference species="M_MAM01481l" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM01482l" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM01483l" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM01484l" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM01485l" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM01486l" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM01487l" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM01488l" stoichiometry="0.1083" constant="true"/>
+          <speciesReference species="M_MAM01489l" stoichiometry="0.025" constant="true"/>
+          <speciesReference species="M_MAM01490l" stoichiometry="0.0215" constant="true"/>
+          <speciesReference species="M_MAM01491l" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM01492l" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM01493l" stoichiometry="0.0029" constant="true"/>
+          <speciesReference species="M_MAM01494l" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM01495l" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM01496l" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM01497l" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM01498l" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM01499l" stoichiometry="0.1915" constant="true"/>
+          <speciesReference species="M_MAM01500l" stoichiometry="0.0084" constant="true"/>
+          <speciesReference species="M_MAM01501l" stoichiometry="0.0133" constant="true"/>
+          <speciesReference species="M_MAM01502l" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM01503l" stoichiometry="0.1545" constant="true"/>
+          <speciesReference species="M_MAM01504l" stoichiometry="0.222" constant="true"/>
+          <speciesReference species="M_MAM01505l" stoichiometry="0.0219" constant="true"/>
+          <speciesReference species="M_MAM01506l" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM01507l" stoichiometry="0.1498" constant="true"/>
+          <speciesReference species="M_MAM01508l" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM01509l" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM01510l" stoichiometry="0.0004" constant="true"/>
+        </listOfProducts>
+      </reaction>
+      <reaction metaid="R_MAR10038" sboTerm="SBO:0000176" id="R_MAR10038" name="cholesterol-ester pool formation and breakdown" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -503053,7 +502041,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#meta_MAR10038">
+            <rdf:Description rdf:about="#meta_R_MAR10038">
               <bqbiol:is>
                 <rdf:Bag/>
               </bqbiol:is>
@@ -503061,71 +502049,71 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01451r" stoichiometry="1" constant="true"/>
-        </listOfReactants>
-        <listOfProducts>
-          <speciesReference species="MAM01452r" stoichiometry="0.0004" constant="true"/>
-          <speciesReference species="MAM01453r" stoichiometry="0.0004" constant="true"/>
-          <speciesReference species="MAM01454r" stoichiometry="0.0004" constant="true"/>
-          <speciesReference species="MAM01455r" stoichiometry="0.0004" constant="true"/>
-          <speciesReference species="MAM01456r" stoichiometry="0.0004" constant="true"/>
-          <speciesReference species="MAM01457r" stoichiometry="0.0004" constant="true"/>
-          <speciesReference species="MAM01458r" stoichiometry="0.0004" constant="true"/>
-          <speciesReference species="MAM01459r" stoichiometry="0.0004" constant="true"/>
-          <speciesReference species="MAM01460r" stoichiometry="0.0004" constant="true"/>
-          <speciesReference species="MAM01461r" stoichiometry="0.0004" constant="true"/>
-          <speciesReference species="MAM01462r" stoichiometry="0.0004" constant="true"/>
-          <speciesReference species="MAM01463r" stoichiometry="0.0004" constant="true"/>
-          <speciesReference species="MAM01464r" stoichiometry="0.0004" constant="true"/>
-          <speciesReference species="MAM01465r" stoichiometry="0.0004" constant="true"/>
-          <speciesReference species="MAM01466r" stoichiometry="0.0278" constant="true"/>
-          <speciesReference species="MAM01467r" stoichiometry="0.0038" constant="true"/>
-          <speciesReference species="MAM01468r" stoichiometry="0.0116" constant="true"/>
-          <speciesReference species="MAM01469r" stoichiometry="0.0004" constant="true"/>
-          <speciesReference species="MAM01470r" stoichiometry="0.0004" constant="true"/>
-          <speciesReference species="MAM01471r" stoichiometry="0.0004" constant="true"/>
-          <speciesReference species="MAM01472r" stoichiometry="0.0004" constant="true"/>
-          <speciesReference species="MAM01473r" stoichiometry="0.0025" constant="true"/>
-          <speciesReference species="MAM01474r" stoichiometry="0.0004" constant="true"/>
-          <speciesReference species="MAM01475r" stoichiometry="0.0059" constant="true"/>
-          <speciesReference species="MAM01476r" stoichiometry="0.0014" constant="true"/>
-          <speciesReference species="MAM01477r" stoichiometry="0.0004" constant="true"/>
-          <speciesReference species="MAM01478r" stoichiometry="0.0004" constant="true"/>
-          <speciesReference species="MAM01479r" stoichiometry="0.0004" constant="true"/>
-          <speciesReference species="MAM01480r" stoichiometry="0.0115" constant="true"/>
-          <speciesReference species="MAM01481r" stoichiometry="0.0004" constant="true"/>
-          <speciesReference species="MAM01482r" stoichiometry="0.0004" constant="true"/>
-          <speciesReference species="MAM01483r" stoichiometry="0.0004" constant="true"/>
-          <speciesReference species="MAM01484r" stoichiometry="0.0004" constant="true"/>
-          <speciesReference species="MAM01485r" stoichiometry="0.0004" constant="true"/>
-          <speciesReference species="MAM01486r" stoichiometry="0.0004" constant="true"/>
-          <speciesReference species="MAM01487r" stoichiometry="0.0004" constant="true"/>
-          <speciesReference species="MAM01488r" stoichiometry="0.1083" constant="true"/>
-          <speciesReference species="MAM01489r" stoichiometry="0.025" constant="true"/>
-          <speciesReference species="MAM01490r" stoichiometry="0.0215" constant="true"/>
-          <speciesReference species="MAM01491r" stoichiometry="0.0004" constant="true"/>
-          <speciesReference species="MAM01492r" stoichiometry="0.0004" constant="true"/>
-          <speciesReference species="MAM01493r" stoichiometry="0.0029" constant="true"/>
-          <speciesReference species="MAM01494r" stoichiometry="0.0004" constant="true"/>
-          <speciesReference species="MAM01495r" stoichiometry="0.0004" constant="true"/>
-          <speciesReference species="MAM01496r" stoichiometry="0.0004" constant="true"/>
-          <speciesReference species="MAM01497r" stoichiometry="0.0004" constant="true"/>
-          <speciesReference species="MAM01498r" stoichiometry="0.0004" constant="true"/>
-          <speciesReference species="MAM01499r" stoichiometry="0.1915" constant="true"/>
-          <speciesReference species="MAM01500r" stoichiometry="0.0084" constant="true"/>
-          <speciesReference species="MAM01501r" stoichiometry="0.0133" constant="true"/>
-          <speciesReference species="MAM01502r" stoichiometry="0.0004" constant="true"/>
-          <speciesReference species="MAM01503r" stoichiometry="0.1545" constant="true"/>
-          <speciesReference species="MAM01504r" stoichiometry="0.222" constant="true"/>
-          <speciesReference species="MAM01505r" stoichiometry="0.0219" constant="true"/>
-          <speciesReference species="MAM01506r" stoichiometry="0.0004" constant="true"/>
-          <speciesReference species="MAM01507r" stoichiometry="0.1498" constant="true"/>
-          <speciesReference species="MAM01508r" stoichiometry="0.0004" constant="true"/>
-          <speciesReference species="MAM01509r" stoichiometry="0.0004" constant="true"/>
-          <speciesReference species="MAM01510r" stoichiometry="0.0004" constant="true"/>
-        </listOfProducts>
-      </reaction>
-      <reaction metaid="MAR10039" sboTerm="SBO:0000185" id="MAR10039" name="fatty acid pool transport (Cytosol to Peroxisome)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+          <speciesReference species="M_MAM01451r" stoichiometry="1" constant="true"/>
+        </listOfReactants>
+        <listOfProducts>
+          <speciesReference species="M_MAM01452r" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM01453r" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM01454r" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM01455r" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM01456r" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM01457r" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM01458r" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM01459r" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM01460r" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM01461r" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM01462r" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM01463r" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM01464r" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM01465r" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM01466r" stoichiometry="0.0278" constant="true"/>
+          <speciesReference species="M_MAM01467r" stoichiometry="0.0038" constant="true"/>
+          <speciesReference species="M_MAM01468r" stoichiometry="0.0116" constant="true"/>
+          <speciesReference species="M_MAM01469r" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM01470r" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM01471r" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM01472r" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM01473r" stoichiometry="0.0025" constant="true"/>
+          <speciesReference species="M_MAM01474r" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM01475r" stoichiometry="0.0059" constant="true"/>
+          <speciesReference species="M_MAM01476r" stoichiometry="0.0014" constant="true"/>
+          <speciesReference species="M_MAM01477r" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM01478r" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM01479r" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM01480r" stoichiometry="0.0115" constant="true"/>
+          <speciesReference species="M_MAM01481r" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM01482r" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM01483r" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM01484r" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM01485r" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM01486r" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM01487r" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM01488r" stoichiometry="0.1083" constant="true"/>
+          <speciesReference species="M_MAM01489r" stoichiometry="0.025" constant="true"/>
+          <speciesReference species="M_MAM01490r" stoichiometry="0.0215" constant="true"/>
+          <speciesReference species="M_MAM01491r" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM01492r" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM01493r" stoichiometry="0.0029" constant="true"/>
+          <speciesReference species="M_MAM01494r" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM01495r" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM01496r" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM01497r" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM01498r" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM01499r" stoichiometry="0.1915" constant="true"/>
+          <speciesReference species="M_MAM01500r" stoichiometry="0.0084" constant="true"/>
+          <speciesReference species="M_MAM01501r" stoichiometry="0.0133" constant="true"/>
+          <speciesReference species="M_MAM01502r" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM01503r" stoichiometry="0.1545" constant="true"/>
+          <speciesReference species="M_MAM01504r" stoichiometry="0.222" constant="true"/>
+          <speciesReference species="M_MAM01505r" stoichiometry="0.0219" constant="true"/>
+          <speciesReference species="M_MAM01506r" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM01507r" stoichiometry="0.1498" constant="true"/>
+          <speciesReference species="M_MAM01508r" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM01509r" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM01510r" stoichiometry="0.0004" constant="true"/>
+        </listOfProducts>
+      </reaction>
+      <reaction metaid="R_MAR10039" sboTerm="SBO:0000185" id="R_MAR10039" name="fatty acid pool transport (Cytosol to Peroxisome)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -503133,7 +502121,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#meta_MAR10039">
+            <rdf:Description rdf:about="#meta_R_MAR10039">
               <bqbiol:is>
                 <rdf:Bag/>
               </bqbiol:is>
@@ -503141,13 +502129,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM10005c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM10005c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM10005x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM10005x" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10040" sboTerm="SBO:0000185" id="MAR10040" name="acyl-CoA pool transport (Cytosol to Peroxisome)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10040" sboTerm="SBO:0000185" id="R_MAR10040" name="acyl-CoA pool transport (Cytosol to Peroxisome)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -503155,7 +502143,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#meta_MAR10040">
+            <rdf:Description rdf:about="#meta_R_MAR10040">
               <bqbiol:is>
                 <rdf:Bag/>
               </bqbiol:is>
@@ -503163,13 +502151,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM10007c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM10007c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM10007x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM10007x" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10041" sboTerm="SBO:0000185" id="MAR10041" name="TAG-VLDL pool transport (Cytosol to Endoplasmic reticulum)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10041" sboTerm="SBO:0000185" id="R_MAR10041" name="TAG-VLDL pool transport (Cytosol to Endoplasmic reticulum)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -503177,7 +502165,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#meta_MAR10041">
+            <rdf:Description rdf:about="#meta_R_MAR10041">
               <bqbiol:is>
                 <rdf:Bag/>
               </bqbiol:is>
@@ -503185,13 +502173,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02959c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02959c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02959r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02959r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10042" sboTerm="SBO:0000185" id="MAR10042" name="TAG-chylomicron pool transport (Cytosol to Extracellular)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10042" sboTerm="SBO:0000185" id="R_MAR10042" name="TAG-chylomicron pool transport (Cytosol to Extracellular)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -503199,7 +502187,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#meta_MAR10042">
+            <rdf:Description rdf:about="#meta_R_MAR10042">
               <bqbiol:is>
                 <rdf:Bag/>
               </bqbiol:is>
@@ -503207,13 +502195,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02956c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02956c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02956e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02956e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10043" sboTerm="SBO:0000185" id="MAR10043" name="TAG-chylomicron pool transport (Cytosol to Lysosome)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10043" sboTerm="SBO:0000185" id="R_MAR10043" name="TAG-chylomicron pool transport (Cytosol to Lysosome)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -503221,7 +502209,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#meta_MAR10043">
+            <rdf:Description rdf:about="#meta_R_MAR10043">
               <bqbiol:is>
                 <rdf:Bag/>
               </bqbiol:is>
@@ -503229,13 +502217,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02956c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02956c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02956l" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02956l" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10044" sboTerm="SBO:0000185" id="MAR10044" name="1,2-diacylglycerol-LD-PC pool transport(Cytosol to Golgi apparatus)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10044" sboTerm="SBO:0000185" id="R_MAR10044" name="1,2-diacylglycerol-LD-PC pool transport(Cytosol to Golgi apparatus)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -503243,7 +502231,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#meta_MAR10044">
+            <rdf:Description rdf:about="#meta_R_MAR10044">
               <bqbiol:is>
                 <rdf:Bag/>
               </bqbiol:is>
@@ -503251,13 +502239,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00235c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00235c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00235g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00235g" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10045" sboTerm="SBO:0000185" id="MAR10045" name="1,2-diacylglycerol-LD-PC pool transport(Cytosol to Nucleus)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10045" sboTerm="SBO:0000185" id="R_MAR10045" name="1,2-diacylglycerol-LD-PC pool transport(Cytosol to Nucleus)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -503265,7 +502253,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#meta_MAR10045">
+            <rdf:Description rdf:about="#meta_R_MAR10045">
               <bqbiol:is>
                 <rdf:Bag/>
               </bqbiol:is>
@@ -503273,13 +502261,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00235c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00235c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00235n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00235n" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10046" sboTerm="SBO:0000185" id="MAR10046" name="1,2-diacylglycerol-LD-PC pool transport(Cytosol to Extracellular)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10046" sboTerm="SBO:0000185" id="R_MAR10046" name="1,2-diacylglycerol-LD-PC pool transport(Cytosol to Extracellular)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -503287,7 +502275,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#meta_MAR10046">
+            <rdf:Description rdf:about="#meta_R_MAR10046">
               <bqbiol:is>
                 <rdf:Bag/>
               </bqbiol:is>
@@ -503295,13 +502283,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00235c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00235c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00235e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00235e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10047" sboTerm="SBO:0000627" id="MAR10047" name="1,2-diacylglycerol-LD-PC pool exchange" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10047" sboTerm="SBO:0000627" id="R_MAR10047" name="1,2-diacylglycerol-LD-PC pool exchange" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -503309,7 +502297,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#meta_MAR10047">
+            <rdf:Description rdf:about="#meta_R_MAR10047">
               <bqbiol:is>
                 <rdf:Bag/>
               </bqbiol:is>
@@ -503317,10 +502305,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00235e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00235e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10048" sboTerm="SBO:0000185" id="MAR10048" name="1,2-diacylglycerol-LD-PI pool transport(Cytosol to Extracellular)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10048" sboTerm="SBO:0000185" id="R_MAR10048" name="1,2-diacylglycerol-LD-PI pool transport(Cytosol to Extracellular)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -503328,7 +502316,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#meta_MAR10048">
+            <rdf:Description rdf:about="#meta_R_MAR10048">
               <bqbiol:is>
                 <rdf:Bag/>
               </bqbiol:is>
@@ -503336,13 +502324,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00237c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00237c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00237n" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00237n" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10049" sboTerm="SBO:0000185" id="MAR10049" name="CDP-diacylglycerol-CL pool transport(Cytosol to Mitochondria)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10049" sboTerm="SBO:0000185" id="R_MAR10049" name="CDP-diacylglycerol-CL pool transport(Cytosol to Mitochondria)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -503350,7 +502338,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#meta_MAR10049">
+            <rdf:Description rdf:about="#meta_R_MAR10049">
               <bqbiol:is>
                 <rdf:Bag/>
               </bqbiol:is>
@@ -503358,13 +502346,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01426c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01426c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01426m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01426m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10050" sboTerm="SBO:0000185" id="MAR10050" name="fatty acid-chylomicron pool transport(Cytosol to Extracellular)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10050" sboTerm="SBO:0000185" id="R_MAR10050" name="fatty acid-chylomicron pool transport(Cytosol to Extracellular)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -503372,7 +502360,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#meta_MAR10050">
+            <rdf:Description rdf:about="#meta_R_MAR10050">
               <bqbiol:is>
                 <rdf:Bag/>
               </bqbiol:is>
@@ -503380,13 +502368,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01807c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01807c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01807e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01807e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10051" sboTerm="SBO:0000185" id="MAR10051" name="fatty acid-VLDL pool transport(Cytosol to Extracellular)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10051" sboTerm="SBO:0000185" id="R_MAR10051" name="fatty acid-VLDL pool transport(Cytosol to Extracellular)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -503394,7 +502382,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#meta_MAR10051">
+            <rdf:Description rdf:about="#meta_R_MAR10051">
               <bqbiol:is>
                 <rdf:Bag/>
               </bqbiol:is>
@@ -503402,13 +502390,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01820c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01820c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01820e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01820e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10052" sboTerm="SBO:0000185" id="MAR10052" name="phosphatidate-LD-PC pool transport(Cytosol to Mitochondria)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10052" sboTerm="SBO:0000185" id="R_MAR10052" name="phosphatidate-LD-PC pool transport(Cytosol to Mitochondria)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -503416,7 +502404,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#meta_MAR10052">
+            <rdf:Description rdf:about="#meta_R_MAR10052">
               <bqbiol:is>
                 <rdf:Bag/>
               </bqbiol:is>
@@ -503424,13 +502412,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02728c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02728c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02728m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02728m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10053" sboTerm="SBO:0000185" id="MAR10053" name="phosphatidate-LD-PI pool transport(Cytosol to Mitochondria)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10053" sboTerm="SBO:0000185" id="R_MAR10053" name="phosphatidate-LD-PI pool transport(Cytosol to Mitochondria)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -503438,7 +502426,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#meta_MAR10053">
+            <rdf:Description rdf:about="#meta_R_MAR10053">
               <bqbiol:is>
                 <rdf:Bag/>
               </bqbiol:is>
@@ -503446,13 +502434,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02730c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02730c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02730m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02730m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10054" sboTerm="SBO:0000185" id="MAR10054" name="phosphatidate-LD-PI pool transport(Cytosol to Endoplasmic reticulum)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10054" sboTerm="SBO:0000185" id="R_MAR10054" name="phosphatidate-LD-PI pool transport(Cytosol to Endoplasmic reticulum)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -503460,7 +502448,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#meta_MAR10054">
+            <rdf:Description rdf:about="#meta_R_MAR10054">
               <bqbiol:is>
                 <rdf:Bag/>
               </bqbiol:is>
@@ -503468,13 +502456,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02730c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02730c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02730r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02730r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10055" sboTerm="SBO:0000185" id="MAR10055" name="phosphatidate-LD-PI pool transport (Cytosol to Golgi apparatus)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10055" sboTerm="SBO:0000185" id="R_MAR10055" name="phosphatidate-LD-PI pool transport (Cytosol to Golgi apparatus)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -503482,7 +502470,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#meta_MAR10055">
+            <rdf:Description rdf:about="#meta_R_MAR10055">
               <bqbiol:is>
                 <rdf:Bag/>
               </bqbiol:is>
@@ -503490,13 +502478,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02730c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02730c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02730g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02730g" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10056" sboTerm="SBO:0000185" id="MAR10056" name="phosphatidate-LD-PS pool transport (Cytosol to Endoplasmic reticulum)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10056" sboTerm="SBO:0000185" id="R_MAR10056" name="phosphatidate-LD-PS pool transport (Cytosol to Endoplasmic reticulum)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -503504,7 +502492,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#meta_MAR10056">
+            <rdf:Description rdf:about="#meta_R_MAR10056">
               <bqbiol:is>
                 <rdf:Bag/>
               </bqbiol:is>
@@ -503512,13 +502500,129 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02731c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02731c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02731r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02731r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10057" sboTerm="SBO:0000185" id="MAR10057" name="phosphatidate-LD-PS pool transport (Cytosol to Golgi apparatus)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10057" sboTerm="SBO:0000185" id="R_MAR10057" name="phosphatidate-LD-PS pool transport (Cytosol to Golgi apparatus)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+        <notes>
+          <body xmlns="http://www.w3.org/1999/xhtml">
+            <p>Confidence Level: 0</p>
+          </body>
+        </notes>
+        <annotation>
+          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+            <rdf:Description rdf:about="#meta_R_MAR10057">
+              <bqbiol:is>
+                <rdf:Bag/>
+              </bqbiol:is>
+            </rdf:Description>
+          </rdf:RDF>
+        </annotation>
+        <listOfReactants>
+          <speciesReference species="M_MAM02731c" stoichiometry="1" constant="true"/>
+        </listOfReactants>
+        <listOfProducts>
+          <speciesReference species="M_MAM02731g" stoichiometry="1" constant="true"/>
+        </listOfProducts>
+      </reaction>
+      <reaction metaid="R_MAR10058" sboTerm="SBO:0000185" id="R_MAR10058" name="protein transport (Cytosol to Endoplasmic reticulum)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+        <notes>
+          <body xmlns="http://www.w3.org/1999/xhtml">
+            <p>Confidence Level: 0</p>
+          </body>
+        </notes>
+        <annotation>
+          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+            <rdf:Description rdf:about="#meta_R_MAR10058">
+              <bqbiol:is>
+                <rdf:Bag/>
+              </bqbiol:is>
+            </rdf:Description>
+          </rdf:RDF>
+        </annotation>
+        <listOfReactants>
+          <speciesReference species="M_MAM00196c" stoichiometry="1" constant="true"/>
+        </listOfReactants>
+        <listOfProducts>
+          <speciesReference species="M_MAM00196r" stoichiometry="1" constant="true"/>
+        </listOfProducts>
+      </reaction>
+      <reaction metaid="R_MAR10059" sboTerm="SBO:0000185" id="R_MAR10059" name="N-formyl-L-glutamate transport (Cytosol to Extracellular)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+        <notes>
+          <body xmlns="http://www.w3.org/1999/xhtml">
+            <p>Confidence Level: 0</p>
+          </body>
+        </notes>
+        <annotation>
+          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+            <rdf:Description rdf:about="#meta_R_MAR10059">
+              <bqbiol:is>
+                <rdf:Bag/>
+              </bqbiol:is>
+            </rdf:Description>
+          </rdf:RDF>
+        </annotation>
+        <listOfReactants>
+          <speciesReference species="M_MAM10011c" stoichiometry="1" constant="true"/>
+        </listOfReactants>
+        <listOfProducts>
+          <speciesReference species="M_MAM10011e" stoichiometry="1" constant="true"/>
+        </listOfProducts>
+      </reaction>
+      <reaction metaid="R_MAR10060" sboTerm="SBO:0000627" id="R_MAR10060" name="N-formyl-L-glutamate exchange" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+        <notes>
+          <body xmlns="http://www.w3.org/1999/xhtml">
+            <p>Confidence Level: 0</p>
+          </body>
+        </notes>
+        <annotation>
+          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+            <rdf:Description rdf:about="#meta_R_MAR10060">
+              <bqbiol:is>
+                <rdf:Bag/>
+              </bqbiol:is>
+            </rdf:Description>
+          </rdf:RDF>
+        </annotation>
+        <listOfReactants>
+          <speciesReference species="M_MAM10011e" stoichiometry="1" constant="true"/>
+        </listOfReactants>
+      </reaction>
+      <reaction metaid="R_MAR10061" sboTerm="SBO:0000176" id="R_MAR10061" name="fatty acyl-CoA reduction" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+        <notes>
+          <body xmlns="http://www.w3.org/1999/xhtml">
+            <p>Confidence Level: 2</p>
+          </body>
+        </notes>
+        <annotation>
+          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+            <rdf:Description rdf:about="#R_MAR10061">
+              <bqbiol:is>
+                <rdf:Bag>
+                  <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR112893"/>
+                </rdf:Bag>
+              </bqbiol:is>
+            </rdf:Description>
+          </rdf:RDF>
+        </annotation>
+        <listOfReactants>
+          <speciesReference species="M_MAM02039x" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02555x" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM10007x" stoichiometry="1" constant="true"/>
+        </listOfReactants>
+        <listOfProducts>
+          <speciesReference species="M_MAM01597x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554x" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03417x" stoichiometry="1" constant="true"/>
+        </listOfProducts>
+        <fbc:geneProductAssociation>
+          <fbc:geneProductRef fbc:geneProduct="CG5065"/>
+        </fbc:geneProductAssociation>
+      </reaction>
+      <reaction metaid="R_MAR10062" sboTerm="SBO:0000176" id="R_MAR10062" name="Protein pool for biomass reaction" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -503526,7 +502630,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#meta_MAR10057">
+            <rdf:Description rdf:about="#meta_R_MAR10062">
               <bqbiol:is>
                 <rdf:Bag/>
               </bqbiol:is>
@@ -503534,13 +502638,52 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02731c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02006c" stoichiometry="0.0721" constant="true"/>
+          <speciesReference species="M_MAM02335c" stoichiometry="0.0801" constant="true"/>
+          <speciesReference species="M_MAM02340c" stoichiometry="0.0512" constant="true"/>
+          <speciesReference species="M_MAM02341c" stoichiometry="0.0375" constant="true"/>
+          <speciesReference species="M_MAM02342c" stoichiometry="0.0556" constant="true"/>
+          <speciesReference species="M_MAM02351c" stoichiometry="0.0183" constant="true"/>
+          <speciesReference species="M_MAM02376c" stoichiometry="0.0428" constant="true"/>
+          <speciesReference species="M_MAM02377c" stoichiometry="0.0783" constant="true"/>
+          <speciesReference species="M_MAM02380c" stoichiometry="0.0228" constant="true"/>
+          <speciesReference species="M_MAM02401c" stoichiometry="0.0442" constant="true"/>
+          <speciesReference species="M_MAM02404c" stoichiometry="0.0911" constant="true"/>
+          <speciesReference species="M_MAM02405c" stoichiometry="0.0719" constant="true"/>
+          <speciesReference species="M_MAM02408c" stoichiometry="0.0222" constant="true"/>
+          <speciesReference species="M_MAM02412c" stoichiometry="0.0368" constant="true"/>
+          <speciesReference species="M_MAM02415c" stoichiometry="0.051" constant="true"/>
+          <speciesReference species="M_MAM02416c" stoichiometry="0.0661" constant="true"/>
+          <speciesReference species="M_MAM02419c" stoichiometry="0.0535" constant="true"/>
+          <speciesReference species="M_MAM02420c" stoichiometry="0.0098" constant="true"/>
+          <speciesReference species="M_MAM02421c" stoichiometry="0.0281" constant="true"/>
+          <speciesReference species="M_MAM02423c" stoichiometry="0.0667" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02731g" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03063c" stoichiometry="0.0801" constant="true"/>
+          <speciesReference species="M_MAM03064c" stoichiometry="0.0512" constant="true"/>
+          <speciesReference species="M_MAM03065c" stoichiometry="0.0375" constant="true"/>
+          <speciesReference species="M_MAM03066c" stoichiometry="0.0556" constant="true"/>
+          <speciesReference species="M_MAM03067c" stoichiometry="0.0183" constant="true"/>
+          <speciesReference species="M_MAM03068c" stoichiometry="0.0428" constant="true"/>
+          <speciesReference species="M_MAM03069c" stoichiometry="0.0783" constant="true"/>
+          <speciesReference species="M_MAM03070c" stoichiometry="0.0721" constant="true"/>
+          <speciesReference species="M_MAM03071c" stoichiometry="0.0228" constant="true"/>
+          <speciesReference species="M_MAM03072c" stoichiometry="0.0442" constant="true"/>
+          <speciesReference species="M_MAM03073c" stoichiometry="0.0911" constant="true"/>
+          <speciesReference species="M_MAM03074c" stoichiometry="0.0719" constant="true"/>
+          <speciesReference species="M_MAM03075c" stoichiometry="0.0222" constant="true"/>
+          <speciesReference species="M_MAM03076c" stoichiometry="0.0368" constant="true"/>
+          <speciesReference species="M_MAM03077c" stoichiometry="0.051" constant="true"/>
+          <speciesReference species="M_MAM03078c" stoichiometry="0.0661" constant="true"/>
+          <speciesReference species="M_MAM03079c" stoichiometry="0.0535" constant="true"/>
+          <speciesReference species="M_MAM03080c" stoichiometry="0.0098" constant="true"/>
+          <speciesReference species="M_MAM03081c" stoichiometry="0.0281" constant="true"/>
+          <speciesReference species="M_MAM03082c" stoichiometry="0.0667" constant="true"/>
+          <speciesReference species="M_MAM10013c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10058" sboTerm="SBO:0000185" id="MAR10058" name="protein transport (Cytosol to Endoplasmic reticulum)" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10063" sboTerm="SBO:0000176" id="R_MAR10063" name="Lipid pool for biomass reaction" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -503548,7 +502691,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#meta_MAR10058">
+            <rdf:Description rdf:about="#meta_R_MAR10063">
               <bqbiol:is>
                 <rdf:Bag/>
               </bqbiol:is>
@@ -503556,13 +502699,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00196c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450c" stoichiometry="0.1155" constant="true"/>
+          <speciesReference species="M_MAM01451c" stoichiometry="0.0115" constant="true"/>
+          <speciesReference species="M_MAM01589c" stoichiometry="0.0205" constant="true"/>
+          <speciesReference species="M_MAM02684c" stoichiometry="0.5029" constant="true"/>
+          <speciesReference species="M_MAM02685c" stoichiometry="0.1905" constant="true"/>
+          <speciesReference species="M_MAM02750c" stoichiometry="0.0692" constant="true"/>
+          <speciesReference species="M_MAM02808c" stoichiometry="0.019" constant="true"/>
+          <speciesReference species="M_MAM02908c" stoichiometry="0.0613" constant="true"/>
+          <speciesReference species="M_MAM02715c" stoichiometry="0.0096" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00196r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM10014c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10059" sboTerm="SBO:0000185" id="MAR10059" name="N-formyl-L-glutamate transport (Cytosol to Extracellular)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10064" sboTerm="SBO:0000176" id="R_MAR10064" name="Small metabolite pool for biomass reaction" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -503570,7 +502721,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#meta_MAR10059">
+            <rdf:Description rdf:about="#meta_R_MAR10064">
               <bqbiol:is>
                 <rdf:Bag/>
               </bqbiol:is>
@@ -503578,13 +502729,130 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM10011c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00180c" stoichiometry="0.0043" constant="true"/>
+          <speciesReference species="M_MAM00569c" stoichiometry="0.0014" constant="true"/>
+          <speciesReference species="M_MAM00913c" stoichiometry="0.0022" constant="true"/>
+          <speciesReference species="M_MAM00916c" stoichiometry="0.0025" constant="true"/>
+          <speciesReference species="M_MAM01261c" stoichiometry="0.0002" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="0.0033" constant="true"/>
+          <speciesReference species="M_MAM01306c" stoichiometry="0.0046" constant="true"/>
+          <speciesReference species="M_MAM01307c" stoichiometry="0.0404" constant="true"/>
+          <speciesReference species="M_MAM01334c" stoichiometry="0.0002" constant="true"/>
+          <speciesReference species="M_MAM01365c" stoichiometry="0.0015" constant="true"/>
+          <speciesReference species="M_MAM01369c" stoichiometry="0.0012" constant="true"/>
+          <speciesReference species="M_MAM01370c" stoichiometry="0.0865" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="0.0271" constant="true"/>
+          <speciesReference species="M_MAM01587c" stoichiometry="0.0034" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="0.0234" constant="true"/>
+          <speciesReference species="M_MAM01623c" stoichiometry="0.0052" constant="true"/>
+          <speciesReference species="M_MAM01628c" stoichiometry="0.0005" constant="true"/>
+          <speciesReference species="M_MAM01639c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM01644c" stoichiometry="0.0002" constant="true"/>
+          <speciesReference species="M_MAM01690c" stoichiometry="0.0094" constant="true"/>
+          <speciesReference species="M_MAM01841c" stoichiometry="0.0088" constant="true"/>
+          <speciesReference species="M_MAM01845c" stoichiometry="0.0006" constant="true"/>
+          <speciesReference species="M_MAM01862c" stoichiometry="0.0028" constant="true"/>
+          <speciesReference species="M_MAM01939c" stoichiometry="0.0008" constant="true"/>
+          <speciesReference species="M_MAM01948c" stoichiometry="0.0002" constant="true"/>
+          <speciesReference species="M_MAM01968c" stoichiometry="0.0039" constant="true"/>
+          <speciesReference species="M_MAM01974c" stoichiometry="0.3694" constant="true"/>
+          <speciesReference species="M_MAM01975c" stoichiometry="0.0998" constant="true"/>
+          <speciesReference species="M_MAM01986c" stoichiometry="0.0215" constant="true"/>
+          <speciesReference species="M_MAM02016c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM02026c" stoichiometry="0.0179" constant="true"/>
+          <speciesReference species="M_MAM02027c" stoichiometry="0.0001" constant="true"/>
+          <speciesReference species="M_MAM02034c" stoichiometry="0.0039" constant="true"/>
+          <speciesReference species="M_MAM02125c" stoichiometry="0.0024" constant="true"/>
+          <speciesReference species="M_MAM02183c" stoichiometry="0.0002" constant="true"/>
+          <speciesReference species="M_MAM02184c" stoichiometry="0.0102" constant="true"/>
+          <speciesReference species="M_MAM02360c" stoichiometry="0.0102" constant="true"/>
+          <speciesReference species="M_MAM02426c" stoichiometry="0.0029" constant="true"/>
+          <speciesReference species="M_MAM02439c" stoichiometry="0.0081" constant="true"/>
+          <speciesReference species="M_MAM02471c" stoichiometry="0.0037" constant="true"/>
+          <speciesReference species="M_MAM02552c" stoichiometry="0.0029" constant="true"/>
+          <speciesReference species="M_MAM02553c" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="0.0002" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="0.0004" constant="true"/>
+          <speciesReference species="M_MAM02724c" stoichiometry="0.0049" constant="true"/>
+          <speciesReference species="M_MAM02725c" stoichiometry="0.0102" constant="true"/>
+          <speciesReference species="M_MAM02770c" stoichiometry="0.0071" constant="true"/>
+          <speciesReference species="M_MAM02819c" stoichiometry="0.034" constant="true"/>
+          <speciesReference species="M_MAM02845c" stoichiometry="0.0002" constant="true"/>
+          <speciesReference species="M_MAM02896c" stoichiometry="0.0282" constant="true"/>
+          <speciesReference species="M_MAM02993c" stoichiometry="0.0388" constant="true"/>
+          <speciesReference species="M_MAM03089c" stoichiometry="0.001" constant="true"/>
+          <speciesReference species="M_MAM03101c" stoichiometry="0.0054" constant="true"/>
+          <speciesReference species="M_MAM03106c" stoichiometry="0.0008" constant="true"/>
+          <speciesReference species="M_MAM03108c" stoichiometry="0.0088" constant="true"/>
+          <speciesReference species="M_MAM03109c" stoichiometry="0.0006" constant="true"/>
+          <speciesReference species="M_MAM03111c" stoichiometry="0.052" constant="true"/>
+          <speciesReference species="M_MAM03130c" stoichiometry="0.0102" constant="true"/>
+          <speciesReference species="M_MAM03135c" stoichiometry="0.0088" constant="true"/>
+        </listOfReactants>
+        <listOfProducts>
+          <speciesReference species="M_MAM10015c" stoichiometry="1" constant="true"/>
+        </listOfProducts>
+      </reaction>
+      <reaction metaid="R_MAR10065" sboTerm="SBO:0000185" id="R_MAR10065" name="Cofactors and vitamins pool for biomass reaction" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+        <notes>
+          <body xmlns="http://www.w3.org/1999/xhtml">
+            <p>Confidence Level: 0</p>
+          </body>
+        </notes>
+        <annotation>
+          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+            <rdf:Description rdf:about="#meta_R_MAR10065">
+              <bqbiol:is>
+                <rdf:Bag/>
+              </bqbiol:is>
+            </rdf:Description>
+          </rdf:RDF>
+        </annotation>
+        <listOfReactants>
+          <speciesReference species="M_MAM00291c" stoichiometry="0.0345" constant="true"/>
+          <speciesReference species="M_MAM00427c" stoichiometry="0.0172" constant="true"/>
+          <speciesReference species="M_MAM00427r" stoichiometry="0.0172" constant="true"/>
+          <speciesReference species="M_MAM00611c" stoichiometry="0.0172" constant="true"/>
+          <speciesReference species="M_MAM00611m" stoichiometry="0.0172" constant="true"/>
+          <speciesReference species="M_MAM00622c" stoichiometry="0.0172" constant="true"/>
+          <speciesReference species="M_MAM00622m" stoichiometry="0.0172" constant="true"/>
+          <speciesReference species="M_MAM00766c" stoichiometry="0.0345" constant="true"/>
+          <speciesReference species="M_MAM01008c" stoichiometry="0.0172" constant="true"/>
+          <speciesReference species="M_MAM01008r" stoichiometry="0.0172" constant="true"/>
+          <speciesReference species="M_MAM01022c" stoichiometry="0.0172" constant="true"/>
+          <speciesReference species="M_MAM01022r" stoichiometry="0.0172" constant="true"/>
+          <speciesReference species="M_MAM01024c" stoichiometry="0.0172" constant="true"/>
+          <speciesReference species="M_MAM01024r" stoichiometry="0.0172" constant="true"/>
+          <speciesReference species="M_MAM01026r" stoichiometry="0.0345" constant="true"/>
+          <speciesReference species="M_MAM01028c" stoichiometry="0.0172" constant="true"/>
+          <speciesReference species="M_MAM01028r" stoichiometry="0.0172" constant="true"/>
+          <speciesReference species="M_MAM01030c" stoichiometry="0.0172" constant="true"/>
+          <speciesReference species="M_MAM01030r" stoichiometry="0.0172" constant="true"/>
+          <speciesReference species="M_MAM01031c" stoichiometry="0.0172" constant="true"/>
+          <speciesReference species="M_MAM01031r" stoichiometry="0.0172" constant="true"/>
+          <speciesReference species="M_MAM01032c" stoichiometry="0.0345" constant="true"/>
+          <speciesReference species="M_MAM01060c" stoichiometry="0.0345" constant="true"/>
+          <speciesReference species="M_MAM01232c" stoichiometry="0.0345" constant="true"/>
+          <speciesReference species="M_MAM01401c" stoichiometry="0.0345" constant="true"/>
+          <speciesReference species="M_MAM01600m" stoichiometry="0.0345" constant="true"/>
+          <speciesReference species="M_MAM01803c" stoichiometry="0.0345" constant="true"/>
+          <speciesReference species="M_MAM01924c" stoichiometry="0.0345" constant="true"/>
+          <speciesReference species="M_MAM02049m" stoichiometry="0.0345" constant="true"/>
+          <speciesReference species="M_MAM02348c" stoichiometry="0.0345" constant="true"/>
+          <speciesReference species="M_MAM02394c" stoichiometry="0.0345" constant="true"/>
+          <speciesReference species="M_MAM02624c" stoichiometry="0.0345" constant="true"/>
+          <speciesReference species="M_MAM02814c" stoichiometry="0.0345" constant="true"/>
+          <speciesReference species="M_MAM02842c" stoichiometry="0.0345" constant="true"/>
+          <speciesReference species="M_MAM02978c" stoichiometry="0.0345" constant="true"/>
+          <speciesReference species="M_MAM02980c" stoichiometry="0.0345" constant="true"/>
+          <speciesReference species="M_MAM02984c" stoichiometry="0.0345" constant="true"/>
+          <speciesReference species="M_MAM03102m" stoichiometry="0.0345" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM10011e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM10012c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10060" sboTerm="SBO:0000627" id="MAR10060" name="N-formyl-L-glutamate exchange" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR13082" sboTerm="SBO:0000629" id="R_MAR13082" name="Generic human cell biomass reaction" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB2N0">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -503592,7 +502860,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#meta_MAR10060">
+            <rdf:Description rdf:about="#meta_R_MAR13082">
               <bqbiol:is>
                 <rdf:Bag/>
               </bqbiol:is>
@@ -503600,41 +502868,55 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM10011e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="45" constant="true"/>
+          <speciesReference species="M_MAM01721n" stoichiometry="0.0267" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="45" constant="true"/>
+          <speciesReference species="M_MAM02847c" stoichiometry="0.1124" constant="true"/>
+          <speciesReference species="M_MAM03161c" stoichiometry="0.4062" constant="true"/>
+          <speciesReference species="M_MAM10012c" stoichiometry="0.0012" constant="true"/>
+          <speciesReference species="M_MAM10013c" stoichiometry="5.3375" constant="true"/>
+          <speciesReference species="M_MAM10014c" stoichiometry="0.2212" constant="true"/>
+          <speciesReference species="M_MAM10015c" stoichiometry="0.4835" constant="true"/>
         </listOfReactants>
+        <listOfProducts>
+          <speciesReference species="M_MAM01285c" stoichiometry="45" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="45" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="45" constant="true"/>
+          <speciesReference species="M_MAM03970c" stoichiometry="1" constant="true"/>
+        </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10061" sboTerm="SBO:0000176" id="MAR10061" name="fatty acyl-CoA reduction" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10066" sboTerm="SBO:0000176" id="R_MAR10066" name="20alpha-Hydroxy-4-pregnen-3-one:NAD+ 20-oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
-            <p>Confidence Level: 2</p>
+            <p>Confidence Level: 0</p>
+            <p>AUTHORS: PMID11013348;PMID6935192;PMID10557352;PMID8172618</p>
           </body>
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10061">
+            <rdf:Description rdf:about="#R_MAR10066">
               <bqbiol:is>
                 <rdf:Bag>
-                  <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR112893"/>
+                  <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R02207"/>
                 </rdf:Bag>
               </bqbiol:is>
             </rdf:Description>
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039x" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02555x" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM10007x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00580c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01597x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554x" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03417x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02769c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
-          <fbc:geneProductRef fbc:geneProduct="CG5065"/>
+          <fbc:geneProductRef fbc:geneProduct="Akr1B"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10062" sboTerm="SBO:0000176" id="MAR10062" name="Protein pool for biomass reaction" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10067" sboTerm="SBO:0000176" id="R_MAR10067" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -503642,7 +502924,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#meta_MAR10062">
+            <rdf:Description rdf:about="#meta_R_MAR10067">
               <bqbiol:is>
                 <rdf:Bag/>
               </bqbiol:is>
@@ -503650,52 +502932,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02006c" stoichiometry="0.0721" constant="true"/>
-          <speciesReference species="MAM02335c" stoichiometry="0.0801" constant="true"/>
-          <speciesReference species="MAM02340c" stoichiometry="0.0512" constant="true"/>
-          <speciesReference species="MAM02341c" stoichiometry="0.0375" constant="true"/>
-          <speciesReference species="MAM02342c" stoichiometry="0.0556" constant="true"/>
-          <speciesReference species="MAM02351c" stoichiometry="0.0183" constant="true"/>
-          <speciesReference species="MAM02376c" stoichiometry="0.0428" constant="true"/>
-          <speciesReference species="MAM02377c" stoichiometry="0.0783" constant="true"/>
-          <speciesReference species="MAM02380c" stoichiometry="0.0228" constant="true"/>
-          <speciesReference species="MAM02401c" stoichiometry="0.0442" constant="true"/>
-          <speciesReference species="MAM02404c" stoichiometry="0.0911" constant="true"/>
-          <speciesReference species="MAM02405c" stoichiometry="0.0719" constant="true"/>
-          <speciesReference species="MAM02408c" stoichiometry="0.0222" constant="true"/>
-          <speciesReference species="MAM02412c" stoichiometry="0.0368" constant="true"/>
-          <speciesReference species="MAM02415c" stoichiometry="0.051" constant="true"/>
-          <speciesReference species="MAM02416c" stoichiometry="0.0661" constant="true"/>
-          <speciesReference species="MAM02419c" stoichiometry="0.0535" constant="true"/>
-          <speciesReference species="MAM02420c" stoichiometry="0.0098" constant="true"/>
-          <speciesReference species="MAM02421c" stoichiometry="0.0281" constant="true"/>
-          <speciesReference species="MAM02423c" stoichiometry="0.0667" constant="true"/>
+          <speciesReference species="M_MAM00521c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03063c" stoichiometry="0.0801" constant="true"/>
-          <speciesReference species="MAM03064c" stoichiometry="0.0512" constant="true"/>
-          <speciesReference species="MAM03065c" stoichiometry="0.0375" constant="true"/>
-          <speciesReference species="MAM03066c" stoichiometry="0.0556" constant="true"/>
-          <speciesReference species="MAM03067c" stoichiometry="0.0183" constant="true"/>
-          <speciesReference species="MAM03068c" stoichiometry="0.0428" constant="true"/>
-          <speciesReference species="MAM03069c" stoichiometry="0.0783" constant="true"/>
-          <speciesReference species="MAM03070c" stoichiometry="0.0721" constant="true"/>
-          <speciesReference species="MAM03071c" stoichiometry="0.0228" constant="true"/>
-          <speciesReference species="MAM03072c" stoichiometry="0.0442" constant="true"/>
-          <speciesReference species="MAM03073c" stoichiometry="0.0911" constant="true"/>
-          <speciesReference species="MAM03074c" stoichiometry="0.0719" constant="true"/>
-          <speciesReference species="MAM03075c" stoichiometry="0.0222" constant="true"/>
-          <speciesReference species="MAM03076c" stoichiometry="0.0368" constant="true"/>
-          <speciesReference species="MAM03077c" stoichiometry="0.051" constant="true"/>
-          <speciesReference species="MAM03078c" stoichiometry="0.0661" constant="true"/>
-          <speciesReference species="MAM03079c" stoichiometry="0.0535" constant="true"/>
-          <speciesReference species="MAM03080c" stoichiometry="0.0098" constant="true"/>
-          <speciesReference species="MAM03081c" stoichiometry="0.0281" constant="true"/>
-          <speciesReference species="MAM03082c" stoichiometry="0.0667" constant="true"/>
-          <speciesReference species="MAM10013c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00525c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
+        <fbc:geneProductAssociation>
+          <fbc:geneProductRef fbc:geneProduct="Ipk2"/>
+        </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10063" sboTerm="SBO:0000176" id="MAR10063" name="Lipid pool for biomass reaction" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10068" sboTerm="SBO:0000176" id="R_MAR10068" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -503703,7 +502951,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#meta_MAR10063">
+            <rdf:Description rdf:about="#meta_R_MAR10068">
               <bqbiol:is>
                 <rdf:Bag/>
               </bqbiol:is>
@@ -503711,21 +502959,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01450c" stoichiometry="0.1155" constant="true"/>
-          <speciesReference species="MAM01451c" stoichiometry="0.0115" constant="true"/>
-          <speciesReference species="MAM01589c" stoichiometry="0.0205" constant="true"/>
-          <speciesReference species="MAM02684c" stoichiometry="0.5029" constant="true"/>
-          <speciesReference species="MAM02685c" stoichiometry="0.1905" constant="true"/>
-          <speciesReference species="MAM02750c" stoichiometry="0.0692" constant="true"/>
-          <speciesReference species="MAM02808c" stoichiometry="0.019" constant="true"/>
-          <speciesReference species="MAM02908c" stoichiometry="0.0613" constant="true"/>
-          <speciesReference species="MAM02715c" stoichiometry="0.0096" constant="true"/>
+          <speciesReference species="M_MAM00525c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM10014c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01718c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10064" sboTerm="SBO:0000176" id="MAR10064" name="Small metabolite pool for biomass reaction" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10069" sboTerm="SBO:0000176" id="R_MAR10069" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -503733,7 +502975,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#meta_MAR10064">
+            <rdf:Description rdf:about="#meta_R_MAR10069">
               <bqbiol:is>
                 <rdf:Bag/>
               </bqbiol:is>
@@ -503741,71 +502983,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00180c" stoichiometry="0.0043" constant="true"/>
-          <speciesReference species="MAM00569c" stoichiometry="0.0014" constant="true"/>
-          <speciesReference species="MAM00913c" stoichiometry="0.0022" constant="true"/>
-          <speciesReference species="MAM00916c" stoichiometry="0.0025" constant="true"/>
-          <speciesReference species="MAM01261c" stoichiometry="0.0002" constant="true"/>
-          <speciesReference species="MAM01285c" stoichiometry="0.0033" constant="true"/>
-          <speciesReference species="MAM01306c" stoichiometry="0.0046" constant="true"/>
-          <speciesReference species="MAM01307c" stoichiometry="0.0404" constant="true"/>
-          <speciesReference species="MAM01334c" stoichiometry="0.0002" constant="true"/>
-          <speciesReference species="MAM01365c" stoichiometry="0.0015" constant="true"/>
-          <speciesReference species="MAM01369c" stoichiometry="0.0012" constant="true"/>
-          <speciesReference species="MAM01370c" stoichiometry="0.0865" constant="true"/>
-          <speciesReference species="MAM01371c" stoichiometry="0.0271" constant="true"/>
-          <speciesReference species="MAM01587c" stoichiometry="0.0034" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="0.0234" constant="true"/>
-          <speciesReference species="MAM01623c" stoichiometry="0.0052" constant="true"/>
-          <speciesReference species="MAM01628c" stoichiometry="0.0005" constant="true"/>
-          <speciesReference species="MAM01639c" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM01644c" stoichiometry="0.0002" constant="true"/>
-          <speciesReference species="MAM01690c" stoichiometry="0.0094" constant="true"/>
-          <speciesReference species="MAM01841c" stoichiometry="0.0088" constant="true"/>
-          <speciesReference species="MAM01845c" stoichiometry="0.0006" constant="true"/>
-          <speciesReference species="MAM01862c" stoichiometry="0.0028" constant="true"/>
-          <speciesReference species="MAM01939c" stoichiometry="0.0008" constant="true"/>
-          <speciesReference species="MAM01948c" stoichiometry="0.0002" constant="true"/>
-          <speciesReference species="MAM01968c" stoichiometry="0.0039" constant="true"/>
-          <speciesReference species="MAM01974c" stoichiometry="0.3694" constant="true"/>
-          <speciesReference species="MAM01975c" stoichiometry="0.0998" constant="true"/>
-          <speciesReference species="MAM01986c" stoichiometry="0.0215" constant="true"/>
-          <speciesReference species="MAM02016c" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM02026c" stoichiometry="0.0179" constant="true"/>
-          <speciesReference species="MAM02027c" stoichiometry="0.0001" constant="true"/>
-          <speciesReference species="MAM02034c" stoichiometry="0.0039" constant="true"/>
-          <speciesReference species="MAM02125c" stoichiometry="0.0024" constant="true"/>
-          <speciesReference species="MAM02183c" stoichiometry="0.0002" constant="true"/>
-          <speciesReference species="MAM02184c" stoichiometry="0.0102" constant="true"/>
-          <speciesReference species="MAM02360c" stoichiometry="0.0102" constant="true"/>
-          <speciesReference species="MAM02426c" stoichiometry="0.0029" constant="true"/>
-          <speciesReference species="MAM02439c" stoichiometry="0.0081" constant="true"/>
-          <speciesReference species="MAM02471c" stoichiometry="0.0037" constant="true"/>
-          <speciesReference species="MAM02552c" stoichiometry="0.0029" constant="true"/>
-          <speciesReference species="MAM02553c" stoichiometry="0.0004" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="0.0002" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="0.0004" constant="true"/>
-          <speciesReference species="MAM02724c" stoichiometry="0.0049" constant="true"/>
-          <speciesReference species="MAM02725c" stoichiometry="0.0102" constant="true"/>
-          <speciesReference species="MAM02770c" stoichiometry="0.0071" constant="true"/>
-          <speciesReference species="MAM02819c" stoichiometry="0.034" constant="true"/>
-          <speciesReference species="MAM02845c" stoichiometry="0.0002" constant="true"/>
-          <speciesReference species="MAM02896c" stoichiometry="0.0282" constant="true"/>
-          <speciesReference species="MAM02993c" stoichiometry="0.0388" constant="true"/>
-          <speciesReference species="MAM03089c" stoichiometry="0.001" constant="true"/>
-          <speciesReference species="MAM03101c" stoichiometry="0.0054" constant="true"/>
-          <speciesReference species="MAM03106c" stoichiometry="0.0008" constant="true"/>
-          <speciesReference species="MAM03108c" stoichiometry="0.0088" constant="true"/>
-          <speciesReference species="MAM03109c" stoichiometry="0.0006" constant="true"/>
-          <speciesReference species="MAM03111c" stoichiometry="0.052" constant="true"/>
-          <speciesReference species="MAM03130c" stoichiometry="0.0102" constant="true"/>
-          <speciesReference species="MAM03135c" stoichiometry="0.0088" constant="true"/>
-        </listOfReactants>
-        <listOfProducts>
-          <speciesReference species="MAM10015c" stoichiometry="1" constant="true"/>
-        </listOfProducts>
-      </reaction>
-      <reaction metaid="MAR10065" sboTerm="SBO:0000185" id="MAR10065" name="Cofactors and vitamins pool for biomass reaction" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+          <speciesReference species="M_MAM01667c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986c" stoichiometry="1" constant="true"/>
+        </listOfReactants>
+        <listOfProducts>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01989c" stoichiometry="1" constant="true"/>
+        </listOfProducts>
+      </reaction>
+      <reaction metaid="R_MAR10070" sboTerm="SBO:0000176" id="R_MAR10070" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -503813,7 +502999,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#meta_MAR10065">
+            <rdf:Description rdf:about="#meta_R_MAR10070">
               <bqbiol:is>
                 <rdf:Bag/>
               </bqbiol:is>
@@ -503821,122 +503007,88 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00291c" stoichiometry="0.0345" constant="true"/>
-          <speciesReference species="MAM00427c" stoichiometry="0.0172" constant="true"/>
-          <speciesReference species="MAM00427r" stoichiometry="0.0172" constant="true"/>
-          <speciesReference species="MAM00611c" stoichiometry="0.0172" constant="true"/>
-          <speciesReference species="MAM00611m" stoichiometry="0.0172" constant="true"/>
-          <speciesReference species="MAM00622c" stoichiometry="0.0172" constant="true"/>
-          <speciesReference species="MAM00622m" stoichiometry="0.0172" constant="true"/>
-          <speciesReference species="MAM00766c" stoichiometry="0.0345" constant="true"/>
-          <speciesReference species="MAM01008c" stoichiometry="0.0172" constant="true"/>
-          <speciesReference species="MAM01008r" stoichiometry="0.0172" constant="true"/>
-          <speciesReference species="MAM01022c" stoichiometry="0.0172" constant="true"/>
-          <speciesReference species="MAM01022r" stoichiometry="0.0172" constant="true"/>
-          <speciesReference species="MAM01024c" stoichiometry="0.0172" constant="true"/>
-          <speciesReference species="MAM01024r" stoichiometry="0.0172" constant="true"/>
-          <speciesReference species="MAM01026r" stoichiometry="0.0345" constant="true"/>
-          <speciesReference species="MAM01028c" stoichiometry="0.0172" constant="true"/>
-          <speciesReference species="MAM01028r" stoichiometry="0.0172" constant="true"/>
-          <speciesReference species="MAM01030c" stoichiometry="0.0172" constant="true"/>
-          <speciesReference species="MAM01030r" stoichiometry="0.0172" constant="true"/>
-          <speciesReference species="MAM01031c" stoichiometry="0.0172" constant="true"/>
-          <speciesReference species="MAM01031r" stoichiometry="0.0172" constant="true"/>
-          <speciesReference species="MAM01032c" stoichiometry="0.0345" constant="true"/>
-          <speciesReference species="MAM01060c" stoichiometry="0.0345" constant="true"/>
-          <speciesReference species="MAM01232c" stoichiometry="0.0345" constant="true"/>
-          <speciesReference species="MAM01401c" stoichiometry="0.0345" constant="true"/>
-          <speciesReference species="MAM01600m" stoichiometry="0.0345" constant="true"/>
-          <speciesReference species="MAM01803c" stoichiometry="0.0345" constant="true"/>
-          <speciesReference species="MAM01924c" stoichiometry="0.0345" constant="true"/>
-          <speciesReference species="MAM02049m" stoichiometry="0.0345" constant="true"/>
-          <speciesReference species="MAM02348c" stoichiometry="0.0345" constant="true"/>
-          <speciesReference species="MAM02394c" stoichiometry="0.0345" constant="true"/>
-          <speciesReference species="MAM02624c" stoichiometry="0.0345" constant="true"/>
-          <speciesReference species="MAM02814c" stoichiometry="0.0345" constant="true"/>
-          <speciesReference species="MAM02842c" stoichiometry="0.0345" constant="true"/>
-          <speciesReference species="MAM02978c" stoichiometry="0.0345" constant="true"/>
-          <speciesReference species="MAM02980c" stoichiometry="0.0345" constant="true"/>
-          <speciesReference species="MAM02984c" stoichiometry="0.0345" constant="true"/>
-          <speciesReference species="MAM03102m" stoichiometry="0.0345" constant="true"/>
+          <speciesReference species="M_MAM02664c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM10017c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM10012c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01713c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM10016c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR13082" sboTerm="SBO:0000629" id="MAR13082" name="Generic human cell biomass reaction" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB2N0">
+      <reaction metaid="R_MAR10071" sboTerm="SBO:0000176" id="R_MAR10071" name="5alpha-pregnan-20alpha-ol-3-one:NADP+ 20-oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
+            <p>AUTHORS: PMID6935192</p>
           </body>
         </notes>
         <annotation>
-          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#meta_MAR13082">
+          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+            <rdf:Description rdf:about="#R_MAR10071">
               <bqbiol:is>
-                <rdf:Bag/>
+                <rdf:Bag>
+                  <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R08958"/>
+                </rdf:Bag>
               </bqbiol:is>
             </rdf:Description>
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="45" constant="true"/>
-          <speciesReference species="MAM01721n" stoichiometry="0.0267" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="45" constant="true"/>
-          <speciesReference species="MAM02847c" stoichiometry="0.1124" constant="true"/>
-          <speciesReference species="MAM03161c" stoichiometry="0.4062" constant="true"/>
-          <speciesReference species="MAM10012c" stoichiometry="0.0012" constant="true"/>
-          <speciesReference species="MAM10013c" stoichiometry="5.3375" constant="true"/>
-          <speciesReference species="MAM10014c" stoichiometry="0.2212" constant="true"/>
-          <speciesReference species="MAM10015c" stoichiometry="0.4835" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM10019c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="45" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="45" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="45" constant="true"/>
-          <speciesReference species="MAM03970c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01072c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
         </listOfProducts>
+        <fbc:geneProductAssociation>
+          <fbc:geneProductRef fbc:geneProduct="Akr1B"/>
+        </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10066" sboTerm="SBO:0000176" id="MAR10066" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10072" sboTerm="SBO:0000176" id="R_MAR10072" name="17alpha,20alpha-Dihydroxypregn-4-en-3-one:NADP+ 20-oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
-            <p>AUTHORS: PMID11013348;PMID6935192;PMID10557352;PMID8172618</p>
+            <p>AUTHORS: PMID6935192</p>
           </body>
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10066">
+            <rdf:Description rdf:about="#R_MAR10072">
               <bqbiol:is>
                 <rdf:Bag>
-                  <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R02207"/>
+                  <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R03325"/>
+                  <rdf:li rdf:resource="https://identifiers.org/rhea/15858"/>
+                  <rdf:li rdf:resource="https://identifiers.org/rhea/15857"/>
                 </rdf:Bag>
               </bqbiol:is>
             </rdf:Description>
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00580c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM10020c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02769c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00409c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Akr1B"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10067" sboTerm="SBO:0000176" id="MAR10067" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10073" sboTerm="SBO:0000185" id="R_MAR10073" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
+            <p>AUTHORS: PMID2018466;PMID6861760</p>
           </body>
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#meta_MAR10067">
+            <rdf:Description rdf:about="#meta_R_MAR10073">
               <bqbiol:is>
                 <rdf:Bag/>
               </bqbiol:is>
@@ -503944,26 +503096,33 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00521c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM10021c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00525c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM10021e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
-          <fbc:geneProductRef fbc:geneProduct="Ipk2"/>
+          <fbc:or>
+            <fbc:geneProductRef fbc:geneProduct="MRP"/>
+            <fbc:geneProductRef fbc:geneProduct="Mdr50"/>
+          </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10068" sboTerm="SBO:0000176" id="MAR10068" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10074" sboTerm="SBO:0000627" id="R_MAR10074" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
+            <p>AUTHORS: PMID2018466;PMID6861760</p>
           </body>
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#meta_MAR10068">
+            <rdf:Description rdf:about="#meta_R_MAR10074">
               <bqbiol:is>
                 <rdf:Bag/>
               </bqbiol:is>
@@ -503971,23 +503130,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00525c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM10021e" stoichiometry="1" constant="true"/>
         </listOfReactants>
-        <listOfProducts>
-          <speciesReference species="MAM01718c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-        </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10069" sboTerm="SBO:0000176" id="MAR10069" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10075" sboTerm="SBO:0000185" id="R_MAR10075" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
+            <p>AUTHORS: PMID2018466;PMID6861760</p>
           </body>
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#meta_MAR10069">
+            <rdf:Description rdf:about="#meta_R_MAR10075">
               <bqbiol:is>
                 <rdf:Bag/>
               </bqbiol:is>
@@ -503995,23 +503150,33 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01667c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01986c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM10022c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01989c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM10022e" stoichiometry="1" constant="true"/>
         </listOfProducts>
+        <fbc:geneProductAssociation>
+          <fbc:or>
+            <fbc:geneProductRef fbc:geneProduct="MRP"/>
+            <fbc:geneProductRef fbc:geneProduct="Mdr50"/>
+          </fbc:or>
+        </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10070" sboTerm="SBO:0000176" id="MAR10070" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10076" sboTerm="SBO:0000627" id="R_MAR10076" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
+            <p>AUTHORS: PMID2018466;PMID6861760</p>
           </body>
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#meta_MAR10070">
+            <rdf:Description rdf:about="#meta_R_MAR10076">
               <bqbiol:is>
                 <rdf:Bag/>
               </bqbiol:is>
@@ -504019,88 +503184,59 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02664c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM10017c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM10022e" stoichiometry="1" constant="true"/>
         </listOfReactants>
-        <listOfProducts>
-          <speciesReference species="MAM01713c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM10016c" stoichiometry="1" constant="true"/>
-        </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10071" sboTerm="SBO:0000176" id="MAR10071" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10077" sboTerm="SBO:0000627" id="R_MAR10077" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
-            <p>AUTHORS: PMID6935192</p>
+            <p>AUTHORS: PMID17404808;PMID19498215</p>
           </body>
         </notes>
         <annotation>
-          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10071">
+          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+            <rdf:Description rdf:about="#meta_R_MAR10077">
               <bqbiol:is>
-                <rdf:Bag>
-                  <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R08958"/>
-                </rdf:Bag>
+                <rdf:Bag/>
               </bqbiol:is>
             </rdf:Description>
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM10019c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM10023e" stoichiometry="1" constant="true"/>
         </listOfReactants>
-        <listOfProducts>
-          <speciesReference species="MAM01072c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-        </listOfProducts>
-        <fbc:geneProductAssociation>
-          <fbc:geneProductRef fbc:geneProduct="Akr1B"/>
-        </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10072" sboTerm="SBO:0000176" id="MAR10072" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10078" sboTerm="SBO:0000627" id="R_MAR10078" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
-            <p>AUTHORS: PMID6935192</p>
+            <p>AUTHORS: PMID17404808;PMID19498215</p>
           </body>
         </notes>
         <annotation>
-          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10072">
+          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+            <rdf:Description rdf:about="#meta_R_MAR10078">
               <bqbiol:is>
-                <rdf:Bag>
-                  <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R03325"/>
-                  <rdf:li rdf:resource="https://identifiers.org/rhea/15858"/>
-                  <rdf:li rdf:resource="https://identifiers.org/rhea/15857"/>
-                </rdf:Bag>
+                <rdf:Bag/>
               </bqbiol:is>
             </rdf:Description>
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM10020c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM10024e" stoichiometry="1" constant="true"/>
         </listOfReactants>
-        <listOfProducts>
-          <speciesReference species="MAM00409c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-        </listOfProducts>
-        <fbc:geneProductAssociation>
-          <fbc:geneProductRef fbc:geneProduct="Akr1B"/>
-        </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10073" sboTerm="SBO:0000185" id="MAR10073" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10079" sboTerm="SBO:0000185" id="R_MAR10079" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
-            <p>AUTHORS: PMID2018466;PMID6861760</p>
+            <p>AUTHORS: PMID17404808;PMID19498215</p>
           </body>
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#meta_MAR10073">
+            <rdf:Description rdf:about="#meta_R_MAR10079">
               <bqbiol:is>
                 <rdf:Bag/>
               </bqbiol:is>
@@ -504108,15 +503244,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM10021c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM10024c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM10021e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM10024e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -504125,16 +503261,16 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10074" sboTerm="SBO:0000627" id="MAR10074" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10080" sboTerm="SBO:0000176" id="R_MAR10080" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
-            <p>AUTHORS: PMID2018466;PMID6861760</p>
+            <p>AUTHORS: PMID17404808;PMID19498215</p>
           </body>
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#meta_MAR10074">
+            <rdf:Description rdf:about="#meta_R_MAR10080">
               <bqbiol:is>
                 <rdf:Bag/>
               </bqbiol:is>
@@ -504142,19 +503278,46 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM10021e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM10021c" stoichiometry="1" constant="true"/>
         </listOfReactants>
+        <listOfProducts>
+          <speciesReference species="M_MAM01334c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM10035c" stoichiometry="1" constant="true"/>
+        </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10075" sboTerm="SBO:0000185" id="MAR10075" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10081" sboTerm="SBO:0000627" id="R_MAR10081" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
-            <p>AUTHORS: PMID2018466;PMID6861760</p>
+            <p>AUTHORS: PMID17404808;PMID19498215</p>
+          </body>
+        </notes>
+        <annotation>
+          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+            <rdf:Description rdf:about="#meta_R_MAR10081">
+              <bqbiol:is>
+                <rdf:Bag/>
+              </bqbiol:is>
+            </rdf:Description>
+          </rdf:RDF>
+        </annotation>
+        <listOfReactants>
+          <speciesReference species="M_MAM10025e" stoichiometry="1" constant="true"/>
+        </listOfReactants>
+      </reaction>
+      <reaction metaid="R_MAR10082" sboTerm="SBO:0000185" id="R_MAR10082" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+        <notes>
+          <body xmlns="http://www.w3.org/1999/xhtml">
+            <p>Confidence Level: 0</p>
+            <p>AUTHORS: PMID17404808;PMID19498215</p>
           </body>
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#meta_MAR10075">
+            <rdf:Description rdf:about="#meta_R_MAR10082">
               <bqbiol:is>
                 <rdf:Bag/>
               </bqbiol:is>
@@ -504162,15 +503325,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM10022c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM10025c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM10022e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM10025e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -504179,16 +503342,16 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10076" sboTerm="SBO:0000627" id="MAR10076" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10083" sboTerm="SBO:0000627" id="R_MAR10083" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
-            <p>AUTHORS: PMID2018466;PMID6861760</p>
+            <p>AUTHORS: PMID17404808;PMID19498215</p>
           </body>
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#meta_MAR10076">
+            <rdf:Description rdf:about="#meta_R_MAR10083">
               <bqbiol:is>
                 <rdf:Bag/>
               </bqbiol:is>
@@ -504196,10 +503359,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM10022e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM10026e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10077" sboTerm="SBO:0000627" id="MAR10077" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10084" sboTerm="SBO:0000627" id="R_MAR10084" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -504208,7 +503371,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#meta_MAR10077">
+            <rdf:Description rdf:about="#meta_R_MAR10084">
               <bqbiol:is>
                 <rdf:Bag/>
               </bqbiol:is>
@@ -504216,10 +503379,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM10023e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM10027e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10078" sboTerm="SBO:0000627" id="MAR10078" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10085" sboTerm="SBO:0000627" id="R_MAR10085" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -504228,7 +503391,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#meta_MAR10078">
+            <rdf:Description rdf:about="#meta_R_MAR10085">
               <bqbiol:is>
                 <rdf:Bag/>
               </bqbiol:is>
@@ -504236,10 +503399,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM10024e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM10028e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10079" sboTerm="SBO:0000185" id="MAR10079" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10086" sboTerm="SBO:0000627" id="R_MAR10086" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -504248,7 +503411,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#meta_MAR10079">
+            <rdf:Description rdf:about="#meta_R_MAR10086">
               <bqbiol:is>
                 <rdf:Bag/>
               </bqbiol:is>
@@ -504256,24 +503419,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM10024c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM10029e" stoichiometry="1" constant="true"/>
         </listOfReactants>
-        <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM10024e" stoichiometry="1" constant="true"/>
-        </listOfProducts>
-        <fbc:geneProductAssociation>
-          <fbc:or>
-            <fbc:geneProductRef fbc:geneProduct="MRP"/>
-            <fbc:geneProductRef fbc:geneProduct="Mdr50"/>
-          </fbc:or>
-        </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10080" sboTerm="SBO:0000176" id="MAR10080" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10087" sboTerm="SBO:0000627" id="R_MAR10087" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -504282,7 +503431,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#meta_MAR10080">
+            <rdf:Description rdf:about="#meta_R_MAR10087">
               <bqbiol:is>
                 <rdf:Bag/>
               </bqbiol:is>
@@ -504290,17 +503439,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM10021c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM10030e" stoichiometry="1" constant="true"/>
         </listOfReactants>
-        <listOfProducts>
-          <speciesReference species="MAM01334c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM10035c" stoichiometry="1" constant="true"/>
-        </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10081" sboTerm="SBO:0000627" id="MAR10081" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10088" sboTerm="SBO:0000627" id="R_MAR10088" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -504309,7 +503451,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#meta_MAR10081">
+            <rdf:Description rdf:about="#meta_R_MAR10088">
               <bqbiol:is>
                 <rdf:Bag/>
               </bqbiol:is>
@@ -504317,10 +503459,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM10025e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM10031e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10082" sboTerm="SBO:0000185" id="MAR10082" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10089" sboTerm="SBO:0000627" id="R_MAR10089" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -504329,7 +503471,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#meta_MAR10082">
+            <rdf:Description rdf:about="#meta_R_MAR10089">
               <bqbiol:is>
                 <rdf:Bag/>
               </bqbiol:is>
@@ -504337,24 +503479,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM10025c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM10032e" stoichiometry="1" constant="true"/>
         </listOfReactants>
-        <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM10025e" stoichiometry="1" constant="true"/>
-        </listOfProducts>
-        <fbc:geneProductAssociation>
-          <fbc:or>
-            <fbc:geneProductRef fbc:geneProduct="MRP"/>
-            <fbc:geneProductRef fbc:geneProduct="Mdr50"/>
-          </fbc:or>
-        </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10083" sboTerm="SBO:0000627" id="MAR10083" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10090" sboTerm="SBO:0000627" id="R_MAR10090" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -504363,7 +503491,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#meta_MAR10083">
+            <rdf:Description rdf:about="#meta_R_MAR10090">
               <bqbiol:is>
                 <rdf:Bag/>
               </bqbiol:is>
@@ -504371,10 +503499,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM10026e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM10033e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10084" sboTerm="SBO:0000627" id="MAR10084" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10091" sboTerm="SBO:0000627" id="R_MAR10091" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -504383,7 +503511,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#meta_MAR10084">
+            <rdf:Description rdf:about="#meta_R_MAR10091">
               <bqbiol:is>
                 <rdf:Bag/>
               </bqbiol:is>
@@ -504391,19 +503519,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM10027e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM10034e" stoichiometry="1" constant="true"/>
         </listOfReactants>
       </reaction>
-      <reaction metaid="MAR10085" sboTerm="SBO:0000627" id="MAR10085" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10092" sboTerm="SBO:0000176" id="R_MAR10092" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
-            <p>AUTHORS: PMID17404808;PMID19498215</p>
+            <p>AUTHORS: PMID12810727;PMID6884990</p>
           </body>
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#meta_MAR10085">
+            <rdf:Description rdf:about="#meta_R_MAR10092">
               <bqbiol:is>
                 <rdf:Bag/>
               </bqbiol:is>
@@ -504411,19 +503539,25 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM10028e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM10035c" stoichiometry="1" constant="true"/>
         </listOfReactants>
+        <listOfProducts>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM10021c" stoichiometry="1" constant="true"/>
+        </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10086" sboTerm="SBO:0000627" id="MAR10086" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10093" sboTerm="SBO:0000176" id="R_MAR10093" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
-            <p>AUTHORS: PMID17404808;PMID19498215</p>
+            <p>AUTHORS: PMID12810727;PMID6884990</p>
           </body>
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#meta_MAR10086">
+            <rdf:Description rdf:about="#meta_R_MAR10093">
               <bqbiol:is>
                 <rdf:Bag/>
               </bqbiol:is>
@@ -504431,39 +503565,54 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM10029e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02961c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM10035c" stoichiometry="1" constant="true"/>
         </listOfReactants>
+        <listOfProducts>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM10024c" stoichiometry="1" constant="true"/>
+        </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10087" sboTerm="SBO:0000627" id="MAR10087" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10094" sboTerm="SBO:0000176" id="R_MAR10094" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
-            <p>AUTHORS: PMID17404808;PMID19498215</p>
+            <p>AUTHORS: PMID12810727;PMID6884990</p>
           </body>
         </notes>
         <annotation>
-          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#meta_MAR10087">
+          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+            <rdf:Description rdf:about="#R_MAR10094">
               <bqbiol:is>
-                <rdf:Bag/>
+                <rdf:Bag>
+                  <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.7"/>
+                </rdf:Bag>
               </bqbiol:is>
             </rdf:Description>
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM10030e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM10022c" stoichiometry="1" constant="true"/>
         </listOfReactants>
+        <listOfProducts>
+          <speciesReference species="M_MAM01334c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM10036c" stoichiometry="1" constant="true"/>
+        </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10088" sboTerm="SBO:0000627" id="MAR10088" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10095" sboTerm="SBO:0000176" id="R_MAR10095" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
-            <p>AUTHORS: PMID17404808;PMID19498215</p>
+            <p>AUTHORS: PMID12810727;PMID6884990</p>
           </body>
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#meta_MAR10088">
+            <rdf:Description rdf:about="#meta_R_MAR10095">
               <bqbiol:is>
                 <rdf:Bag/>
               </bqbiol:is>
@@ -504471,19 +503620,25 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM10031e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM10036c" stoichiometry="1" constant="true"/>
         </listOfReactants>
+        <listOfProducts>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM10022c" stoichiometry="1" constant="true"/>
+        </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10089" sboTerm="SBO:0000627" id="MAR10089" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10096" sboTerm="SBO:0000176" id="R_MAR10096" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
-            <p>AUTHORS: PMID17404808;PMID19498215</p>
+            <p>AUTHORS: PMID12810727;PMID6884990</p>
           </body>
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#meta_MAR10089">
+            <rdf:Description rdf:about="#meta_R_MAR10096">
               <bqbiol:is>
                 <rdf:Bag/>
               </bqbiol:is>
@@ -504491,19 +503646,54 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM10032e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02961c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM10036c" stoichiometry="1" constant="true"/>
         </listOfReactants>
+        <listOfProducts>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM10032c" stoichiometry="1" constant="true"/>
+        </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10090" sboTerm="SBO:0000627" id="MAR10090" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10097" sboTerm="SBO:0000176" id="R_MAR10097" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
-            <p>AUTHORS: PMID17404808;PMID19498215</p>
+            <p>AUTHORS: PMID12810727;PMID6884990</p>
+          </body>
+        </notes>
+        <annotation>
+          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+            <rdf:Description rdf:about="#R_MAR10097">
+              <bqbiol:is>
+                <rdf:Bag>
+                  <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.7"/>
+                </rdf:Bag>
+              </bqbiol:is>
+            </rdf:Description>
+          </rdf:RDF>
+        </annotation>
+        <listOfReactants>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM10025c" stoichiometry="1" constant="true"/>
+        </listOfReactants>
+        <listOfProducts>
+          <speciesReference species="M_MAM01334c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM10037c" stoichiometry="1" constant="true"/>
+        </listOfProducts>
+      </reaction>
+      <reaction metaid="R_MAR10098" sboTerm="SBO:0000176" id="R_MAR10098" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+        <notes>
+          <body xmlns="http://www.w3.org/1999/xhtml">
+            <p>Confidence Level: 0</p>
+            <p>AUTHORS: PMID12810727;PMID6884990</p>
           </body>
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#meta_MAR10090">
+            <rdf:Description rdf:about="#meta_R_MAR10098">
               <bqbiol:is>
                 <rdf:Bag/>
               </bqbiol:is>
@@ -504511,19 +503701,25 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM10033e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM10037c" stoichiometry="1" constant="true"/>
         </listOfReactants>
+        <listOfProducts>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM10025c" stoichiometry="1" constant="true"/>
+        </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10091" sboTerm="SBO:0000627" id="MAR10091" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10099" sboTerm="SBO:0000176" id="R_MAR10099" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
-            <p>AUTHORS: PMID17404808;PMID19498215</p>
+            <p>AUTHORS: PMID12810727;PMID6884990</p>
           </body>
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#meta_MAR10091">
+            <rdf:Description rdf:about="#meta_R_MAR10099">
               <bqbiol:is>
                 <rdf:Bag/>
               </bqbiol:is>
@@ -504531,19 +503727,25 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM10034e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02961c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM10037c" stoichiometry="1" constant="true"/>
         </listOfReactants>
+        <listOfProducts>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM10031c" stoichiometry="1" constant="true"/>
+        </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10092" sboTerm="SBO:0000176" id="MAR10092" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10100" sboTerm="SBO:0000185" id="R_MAR10100" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
-            <p>AUTHORS: PMID12810727;PMID6884990</p>
+            <p>AUTHORS: PMID17404808;PMID19498215</p>
           </body>
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#meta_MAR10092">
+            <rdf:Description rdf:about="#meta_R_MAR10100">
               <bqbiol:is>
                 <rdf:Bag/>
               </bqbiol:is>
@@ -504551,25 +503753,33 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM10035c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM10034c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM10021c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM10034e" stoichiometry="1" constant="true"/>
         </listOfProducts>
+        <fbc:geneProductAssociation>
+          <fbc:or>
+            <fbc:geneProductRef fbc:geneProduct="MRP"/>
+            <fbc:geneProductRef fbc:geneProduct="Mdr50"/>
+          </fbc:or>
+        </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10093" sboTerm="SBO:0000176" id="MAR10093" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10101" sboTerm="SBO:0000185" id="R_MAR10101" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
-            <p>AUTHORS: PMID12810727;PMID6884990</p>
+            <p>AUTHORS: PMID17404808;PMID19498215</p>
           </body>
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#meta_MAR10093">
+            <rdf:Description rdf:about="#meta_R_MAR10101">
               <bqbiol:is>
                 <rdf:Bag/>
               </bqbiol:is>
@@ -504577,54 +503787,67 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02961c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM10035c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM10026c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM10024c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM10026e" stoichiometry="1" constant="true"/>
         </listOfProducts>
+        <fbc:geneProductAssociation>
+          <fbc:or>
+            <fbc:geneProductRef fbc:geneProduct="MRP"/>
+            <fbc:geneProductRef fbc:geneProduct="Mdr50"/>
+          </fbc:or>
+        </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10094" sboTerm="SBO:0000176" id="MAR10094" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10102" sboTerm="SBO:0000185" id="R_MAR10102" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
-            <p>AUTHORS: PMID12810727;PMID6884990</p>
+            <p>AUTHORS: PMID17404808;PMID19498215</p>
           </body>
         </notes>
         <annotation>
-          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10094">
+          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+            <rdf:Description rdf:about="#meta_R_MAR10102">
               <bqbiol:is>
-                <rdf:Bag>
-                  <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.7"/>
-                </rdf:Bag>
+                <rdf:Bag/>
               </bqbiol:is>
             </rdf:Description>
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM10022c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM10027c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01334c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM10036c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM10027e" stoichiometry="1" constant="true"/>
         </listOfProducts>
+        <fbc:geneProductAssociation>
+          <fbc:or>
+            <fbc:geneProductRef fbc:geneProduct="MRP"/>
+            <fbc:geneProductRef fbc:geneProduct="Mdr50"/>
+          </fbc:or>
+        </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10095" sboTerm="SBO:0000176" id="MAR10095" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10103" sboTerm="SBO:0000185" id="R_MAR10103" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
-            <p>AUTHORS: PMID12810727;PMID6884990</p>
+            <p>AUTHORS: PMID17404808;PMID19498215</p>
           </body>
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#meta_MAR10095">
+            <rdf:Description rdf:about="#meta_R_MAR10103">
               <bqbiol:is>
                 <rdf:Bag/>
               </bqbiol:is>
@@ -504632,25 +503855,33 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM10036c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM10030c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM10022c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM10030e" stoichiometry="1" constant="true"/>
         </listOfProducts>
+        <fbc:geneProductAssociation>
+          <fbc:or>
+            <fbc:geneProductRef fbc:geneProduct="MRP"/>
+            <fbc:geneProductRef fbc:geneProduct="Mdr50"/>
+          </fbc:or>
+        </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10096" sboTerm="SBO:0000176" id="MAR10096" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10104" sboTerm="SBO:0000185" id="R_MAR10104" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
-            <p>AUTHORS: PMID12810727;PMID6884990</p>
+            <p>AUTHORS: PMID17404808;PMID19498215</p>
           </body>
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#meta_MAR10096">
+            <rdf:Description rdf:about="#meta_R_MAR10104">
               <bqbiol:is>
                 <rdf:Bag/>
               </bqbiol:is>
@@ -504658,16 +503889,24 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02961c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM10036c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM10033c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM10032c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM10033e" stoichiometry="1" constant="true"/>
         </listOfProducts>
+        <fbc:geneProductAssociation>
+          <fbc:or>
+            <fbc:geneProductRef fbc:geneProduct="MRP"/>
+            <fbc:geneProductRef fbc:geneProduct="Mdr50"/>
+          </fbc:or>
+        </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10097" sboTerm="SBO:0000176" id="MAR10097" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10105" sboTerm="SBO:0000176" id="R_MAR10105" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -504676,7 +503915,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10097">
+            <rdf:Description rdf:about="#R_MAR10105">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.7"/>
@@ -504686,17 +503925,43 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM10025c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM10030c" stoichiometry="1" constant="true"/>
+        </listOfReactants>
+        <listOfProducts>
+          <speciesReference species="M_MAM01334c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM10038c" stoichiometry="1" constant="true"/>
+        </listOfProducts>
+      </reaction>
+      <reaction metaid="R_MAR10106" sboTerm="SBO:0000176" id="R_MAR10106" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+        <notes>
+          <body xmlns="http://www.w3.org/1999/xhtml">
+            <p>Confidence Level: 0</p>
+            <p>AUTHORS: PMID12810727;PMID6884990</p>
+          </body>
+        </notes>
+        <annotation>
+          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+            <rdf:Description rdf:about="#meta_R_MAR10106">
+              <bqbiol:is>
+                <rdf:Bag/>
+              </bqbiol:is>
+            </rdf:Description>
+          </rdf:RDF>
+        </annotation>
+        <listOfReactants>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM10038c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01334c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM10037c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM10030c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10098" sboTerm="SBO:0000176" id="MAR10098" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10107" sboTerm="SBO:0000176" id="R_MAR10107" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -504705,7 +503970,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#meta_MAR10098">
+            <rdf:Description rdf:about="#meta_R_MAR10107">
               <bqbiol:is>
                 <rdf:Bag/>
               </bqbiol:is>
@@ -504713,16 +503978,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM10037c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02961c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM10038c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM10025c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM10026c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10099" sboTerm="SBO:0000176" id="MAR10099" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10108" sboTerm="SBO:0000176" id="R_MAR10108" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -504731,7 +503996,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#meta_MAR10099">
+            <rdf:Description rdf:about="#meta_R_MAR10108">
               <bqbiol:is>
                 <rdf:Bag/>
               </bqbiol:is>
@@ -504739,16 +504004,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02961c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM10037c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM10038c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM10031c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM10027c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10100" sboTerm="SBO:0000185" id="MAR10100" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10109" sboTerm="SBO:0000185" id="R_MAR10109" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -504757,7 +504022,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#meta_MAR10100">
+            <rdf:Description rdf:about="#meta_R_MAR10109">
               <bqbiol:is>
                 <rdf:Bag/>
               </bqbiol:is>
@@ -504765,15 +504030,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM10034c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM10029c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM10034e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM10029e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -504782,7 +504047,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10101" sboTerm="SBO:0000185" id="MAR10101" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10110" sboTerm="SBO:0000185" id="R_MAR10110" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -504791,7 +504056,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#meta_MAR10101">
+            <rdf:Description rdf:about="#meta_R_MAR10110">
               <bqbiol:is>
                 <rdf:Bag/>
               </bqbiol:is>
@@ -504799,15 +504064,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM10026c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM10023c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM10026e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM10023e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -504816,50 +504081,45 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10102" sboTerm="SBO:0000185" id="MAR10102" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10111" sboTerm="SBO:0000176" id="R_MAR10111" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
-            <p>AUTHORS: PMID17404808;PMID19498215</p>
+            <p>AUTHORS: PMID12810727;PMID6884990</p>
           </body>
         </notes>
         <annotation>
-          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#meta_MAR10102">
+          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+            <rdf:Description rdf:about="#R_MAR10111">
               <bqbiol:is>
-                <rdf:Bag/>
+                <rdf:Bag>
+                  <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.7"/>
+                </rdf:Bag>
               </bqbiol:is>
             </rdf:Description>
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM10027c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM10023c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM10027e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM10039c" stoichiometry="1" constant="true"/>
         </listOfProducts>
-        <fbc:geneProductAssociation>
-          <fbc:or>
-            <fbc:geneProductRef fbc:geneProduct="MRP"/>
-            <fbc:geneProductRef fbc:geneProduct="Mdr50"/>
-          </fbc:or>
-        </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10103" sboTerm="SBO:0000185" id="MAR10103" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10112" sboTerm="SBO:0000176" id="R_MAR10112" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
-            <p>AUTHORS: PMID17404808;PMID19498215</p>
+            <p>AUTHORS: PMID12810727;PMID6884990</p>
           </body>
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#meta_MAR10103">
+            <rdf:Description rdf:about="#meta_R_MAR10112">
               <bqbiol:is>
                 <rdf:Bag/>
               </bqbiol:is>
@@ -504867,33 +504127,25 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM10030c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM10039c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM10030e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM10023c" stoichiometry="1" constant="true"/>
         </listOfProducts>
-        <fbc:geneProductAssociation>
-          <fbc:or>
-            <fbc:geneProductRef fbc:geneProduct="MRP"/>
-            <fbc:geneProductRef fbc:geneProduct="Mdr50"/>
-          </fbc:or>
-        </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10104" sboTerm="SBO:0000185" id="MAR10104" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10113" sboTerm="SBO:0000176" id="R_MAR10113" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
-            <p>AUTHORS: PMID17404808;PMID19498215</p>
+            <p>AUTHORS: PMID12810727;PMID6884990</p>
           </body>
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#meta_MAR10104">
+            <rdf:Description rdf:about="#meta_R_MAR10113">
               <bqbiol:is>
                 <rdf:Bag/>
               </bqbiol:is>
@@ -504901,24 +504153,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM10033c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02961c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM10039c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM10033e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM10034c" stoichiometry="1" constant="true"/>
         </listOfProducts>
-        <fbc:geneProductAssociation>
-          <fbc:or>
-            <fbc:geneProductRef fbc:geneProduct="MRP"/>
-            <fbc:geneProductRef fbc:geneProduct="Mdr50"/>
-          </fbc:or>
-        </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10105" sboTerm="SBO:0000176" id="MAR10105" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10114" sboTerm="SBO:0000176" id="R_MAR10114" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -504926,37 +504170,34 @@
           </body>
         </notes>
         <annotation>
-          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10105">
+          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+            <rdf:Description rdf:about="#meta_R_MAR10114">
               <bqbiol:is>
-                <rdf:Bag>
-                  <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.7"/>
-                </rdf:Bag>
+                <rdf:Bag/>
               </bqbiol:is>
             </rdf:Description>
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM10030c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM10039c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01334c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM10038c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM10029c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10106" sboTerm="SBO:0000176" id="MAR10106" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10115" sboTerm="SBO:0000185" id="R_MAR10115" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
-            <p>AUTHORS: PMID12810727;PMID6884990</p>
+            <p>AUTHORS: PMID17404808;PMID19498215</p>
           </body>
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#meta_MAR10106">
+            <rdf:Description rdf:about="#meta_R_MAR10115">
               <bqbiol:is>
                 <rdf:Bag/>
               </bqbiol:is>
@@ -504964,25 +504205,33 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM10038c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM10032c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM10030c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM10032e" stoichiometry="1" constant="true"/>
         </listOfProducts>
+        <fbc:geneProductAssociation>
+          <fbc:or>
+            <fbc:geneProductRef fbc:geneProduct="MRP"/>
+            <fbc:geneProductRef fbc:geneProduct="Mdr50"/>
+          </fbc:or>
+        </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10107" sboTerm="SBO:0000176" id="MAR10107" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10117" sboTerm="SBO:0000185" id="R_MAR10117" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
-            <p>AUTHORS: PMID12810727;PMID6884990</p>
+            <p>AUTHORS: PMID17404808;PMID19498215</p>
           </body>
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#meta_MAR10107">
+            <rdf:Description rdf:about="#meta_R_MAR10117">
               <bqbiol:is>
                 <rdf:Bag/>
               </bqbiol:is>
@@ -504990,25 +504239,33 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02961c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM10038c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM10031c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM10026c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM10031e" stoichiometry="1" constant="true"/>
         </listOfProducts>
+        <fbc:geneProductAssociation>
+          <fbc:or>
+            <fbc:geneProductRef fbc:geneProduct="MRP"/>
+            <fbc:geneProductRef fbc:geneProduct="Mdr50"/>
+          </fbc:or>
+        </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10108" sboTerm="SBO:0000176" id="MAR10108" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10118" sboTerm="SBO:0000185" id="R_MAR10118" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
-            <p>AUTHORS: PMID12810727;PMID6884990</p>
+            <p>AUTHORS: PMID17404808;PMID19498215</p>
           </body>
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#meta_MAR10108">
+            <rdf:Description rdf:about="#meta_R_MAR10118">
               <bqbiol:is>
                 <rdf:Bag/>
               </bqbiol:is>
@@ -505016,16 +504273,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01986c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM10038c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM10025e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM10027c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM10025c" stoichiometry="1" constant="true"/>
         </listOfProducts>
+        <fbc:geneProductAssociation>
+          <fbc:geneProductRef fbc:geneProduct="CG11655"/>
+        </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10109" sboTerm="SBO:0000185" id="MAR10109" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10119" sboTerm="SBO:0000185" id="R_MAR10119" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -505034,7 +504293,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#meta_MAR10109">
+            <rdf:Description rdf:about="#meta_R_MAR10119">
               <bqbiol:is>
                 <rdf:Bag/>
               </bqbiol:is>
@@ -505042,24 +504301,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM10029c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM10030e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM10029e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM10030c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
-          <fbc:or>
-            <fbc:geneProductRef fbc:geneProduct="MRP"/>
-            <fbc:geneProductRef fbc:geneProduct="Mdr50"/>
-          </fbc:or>
+          <fbc:geneProductRef fbc:geneProduct="CG11655"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10110" sboTerm="SBO:0000185" id="MAR10110" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10120" sboTerm="SBO:0000185" id="R_MAR10120" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -505068,7 +504321,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#meta_MAR10110">
+            <rdf:Description rdf:about="#meta_R_MAR10120">
               <bqbiol:is>
                 <rdf:Bag/>
               </bqbiol:is>
@@ -505076,33 +504329,26 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM10023c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM10023e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM10023e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM10023c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
-          <fbc:or>
-            <fbc:geneProductRef fbc:geneProduct="MRP"/>
-            <fbc:geneProductRef fbc:geneProduct="Mdr50"/>
-          </fbc:or>
+          <fbc:geneProductRef fbc:geneProduct="CG11655"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10111" sboTerm="SBO:0000176" id="MAR10111" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10121" sboTerm="SBO:0000176" id="R_MAR10121" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
-            <p>AUTHORS: PMID12810727;PMID6884990</p>
           </body>
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10111">
+            <rdf:Description rdf:about="#R_MAR10121">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.7"/>
@@ -505112,26 +504358,26 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM10023c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02155c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01334c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM10039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM10040c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10112" sboTerm="SBO:0000176" id="MAR10112" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10122" sboTerm="SBO:0000176" id="R_MAR10122" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
-            <p>AUTHORS: PMID12810727;PMID6884990</p>
           </body>
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#meta_MAR10112">
+            <rdf:Description rdf:about="#meta_R_MAR10122">
               <bqbiol:is>
                 <rdf:Bag/>
               </bqbiol:is>
@@ -505139,25 +504385,23 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM10039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM10040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM10023c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02155c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10113" sboTerm="SBO:0000176" id="MAR10113" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10123" sboTerm="SBO:0000176" id="R_MAR10123" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
-            <p>AUTHORS: PMID12810727;PMID6884990</p>
           </body>
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#meta_MAR10113">
+            <rdf:Description rdf:about="#meta_R_MAR10123">
               <bqbiol:is>
                 <rdf:Bag/>
               </bqbiol:is>
@@ -505165,25 +504409,24 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02961c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM10039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02961c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM10040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM10034c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM10041c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10114" sboTerm="SBO:0000176" id="MAR10114" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10124" sboTerm="SBO:0000176" id="R_MAR10124" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
-            <p>AUTHORS: PMID12810727;PMID6884990</p>
           </body>
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#meta_MAR10114">
+            <rdf:Description rdf:about="#meta_R_MAR10124">
               <bqbiol:is>
                 <rdf:Bag/>
               </bqbiol:is>
@@ -505191,16 +504434,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01986c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM10039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM10040c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM10029c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM10028c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10115" sboTerm="SBO:0000185" id="MAR10115" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10125" sboTerm="SBO:0000185" id="R_MAR10125" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -505209,7 +504452,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#meta_MAR10115">
+            <rdf:Description rdf:about="#meta_R_MAR10125">
               <bqbiol:is>
                 <rdf:Bag/>
               </bqbiol:is>
@@ -505217,15 +504460,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM10032c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM10041c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM10032e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM10041e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -505234,7 +504477,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10117" sboTerm="SBO:0000185" id="MAR10117" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10126" sboTerm="SBO:0000185" id="R_MAR10126" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -505243,7 +504486,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#meta_MAR10117">
+            <rdf:Description rdf:about="#meta_R_MAR10126">
               <bqbiol:is>
                 <rdf:Bag/>
               </bqbiol:is>
@@ -505251,15 +504494,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM10031c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM10028c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM10031e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM10028e" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -505268,7 +504511,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10118" sboTerm="SBO:0000185" id="MAR10118" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10127" sboTerm="SBO:0000185" id="R_MAR10127" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -505277,7 +504520,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#meta_MAR10118">
+            <rdf:Description rdf:about="#meta_R_MAR10127">
               <bqbiol:is>
                 <rdf:Bag/>
               </bqbiol:is>
@@ -505285,27 +504528,26 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02519e" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM10025e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519e" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM10041e" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02519c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM10025c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02519c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM10041c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG11655"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10119" sboTerm="SBO:0000185" id="MAR10119" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10128" sboTerm="SBO:0000176" id="R_MAR10128" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
-            <p>AUTHORS: PMID17404808;PMID19498215</p>
           </body>
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#meta_MAR10119">
+            <rdf:Description rdf:about="#meta_R_MAR10128">
               <bqbiol:is>
                 <rdf:Bag/>
               </bqbiol:is>
@@ -505313,27 +504555,25 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02519e" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM10030e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03129c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02519c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM10030c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01334c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM10042c" stoichiometry="1" constant="true"/>
         </listOfProducts>
-        <fbc:geneProductAssociation>
-          <fbc:geneProductRef fbc:geneProduct="CG11655"/>
-        </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10120" sboTerm="SBO:0000185" id="MAR10120" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10129" sboTerm="SBO:0000176" id="R_MAR10129" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
-            <p>AUTHORS: PMID17404808;PMID19498215</p>
           </body>
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#meta_MAR10120">
+            <rdf:Description rdf:about="#meta_R_MAR10129">
               <bqbiol:is>
                 <rdf:Bag/>
               </bqbiol:is>
@@ -505341,71 +504581,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02519e" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM10023e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM10042c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02519c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM10023c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03129c" stoichiometry="1" constant="true"/>
         </listOfProducts>
-        <fbc:geneProductAssociation>
-          <fbc:geneProductRef fbc:geneProduct="CG11655"/>
-        </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10121" sboTerm="SBO:0000176" id="MAR10121" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
-        <notes>
-          <body xmlns="http://www.w3.org/1999/xhtml">
-            <p>Confidence Level: 0</p>
-          </body>
-        </notes>
-        <annotation>
-          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR10121">
-              <bqbiol:is>
-                <rdf:Bag>
-                  <rdf:li rdf:resource="https://identifiers.org/ec-code/6.2.1.7"/>
-                </rdf:Bag>
-              </bqbiol:is>
-            </rdf:Description>
-          </rdf:RDF>
-        </annotation>
-        <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02155c" stoichiometry="1" constant="true"/>
-        </listOfReactants>
-        <listOfProducts>
-          <speciesReference species="MAM01334c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM10040c" stoichiometry="1" constant="true"/>
-        </listOfProducts>
-      </reaction>
-      <reaction metaid="MAR10122" sboTerm="SBO:0000176" id="MAR10122" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
-        <notes>
-          <body xmlns="http://www.w3.org/1999/xhtml">
-            <p>Confidence Level: 0</p>
-          </body>
-        </notes>
-        <annotation>
-          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#meta_MAR10122">
-              <bqbiol:is>
-                <rdf:Bag/>
-              </bqbiol:is>
-            </rdf:Description>
-          </rdf:RDF>
-        </annotation>
-        <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM10040c" stoichiometry="1" constant="true"/>
-        </listOfReactants>
-        <listOfProducts>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02155c" stoichiometry="1" constant="true"/>
-        </listOfProducts>
-      </reaction>
-      <reaction metaid="MAR10123" sboTerm="SBO:0000176" id="MAR10123" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10130" sboTerm="SBO:0000176" id="R_MAR10130" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -505413,7 +504598,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#meta_MAR10123">
+            <rdf:Description rdf:about="#meta_R_MAR10130">
               <bqbiol:is>
                 <rdf:Bag/>
               </bqbiol:is>
@@ -505421,16 +504606,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02961c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM10040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02961c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM10042c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM10041c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02966c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10124" sboTerm="SBO:0000176" id="MAR10124" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10131" sboTerm="SBO:0000176" id="R_MAR10131" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -505438,7 +504622,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#meta_MAR10124">
+            <rdf:Description rdf:about="#meta_R_MAR10131">
               <bqbiol:is>
                 <rdf:Bag/>
               </bqbiol:is>
@@ -505446,16 +504630,15 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01986c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM10040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM10042c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM10028c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01597c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02004c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10125" sboTerm="SBO:0000185" id="MAR10125" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR10132" sboTerm="SBO:0000627" id="R_MAR10132" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -505464,7 +504647,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#meta_MAR10125">
+            <rdf:Description rdf:about="#meta_R_MAR10132">
               <bqbiol:is>
                 <rdf:Bag/>
               </bqbiol:is>
@@ -505472,120 +504655,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM10041c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM10041e" stoichiometry="1" constant="true"/>
         </listOfReactants>
-        <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM10041e" stoichiometry="1" constant="true"/>
-        </listOfProducts>
-        <fbc:geneProductAssociation>
-          <fbc:or>
-            <fbc:geneProductRef fbc:geneProduct="MRP"/>
-            <fbc:geneProductRef fbc:geneProduct="Mdr50"/>
-          </fbc:or>
-        </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR10126" sboTerm="SBO:0000185" id="MAR10126" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR13083" sboTerm="SBO:0000176" id="R_MAR13083" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
-            <p>Confidence Level: 0</p>
-            <p>AUTHORS: PMID17404808;PMID19498215</p>
-          </body>
-        </notes>
-        <annotation>
-          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#meta_MAR10126">
-              <bqbiol:is>
-                <rdf:Bag/>
-              </bqbiol:is>
-            </rdf:Description>
-          </rdf:RDF>
-        </annotation>
-        <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM10028c" stoichiometry="1" constant="true"/>
-        </listOfReactants>
-        <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM10028e" stoichiometry="1" constant="true"/>
-        </listOfProducts>
-        <fbc:geneProductAssociation>
-          <fbc:or>
-            <fbc:geneProductRef fbc:geneProduct="MRP"/>
-            <fbc:geneProductRef fbc:geneProduct="Mdr50"/>
-          </fbc:or>
-        </fbc:geneProductAssociation>
-      </reaction>
-      <reaction metaid="MAR10127" sboTerm="SBO:0000185" id="MAR10127" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
-        <notes>
-          <body xmlns="http://www.w3.org/1999/xhtml">
-            <p>Confidence Level: 0</p>
-            <p>AUTHORS: PMID17404808;PMID19498215</p>
-          </body>
-        </notes>
-        <annotation>
-          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#meta_MAR10127">
-              <bqbiol:is>
-                <rdf:Bag/>
-              </bqbiol:is>
-            </rdf:Description>
-          </rdf:RDF>
-        </annotation>
-        <listOfReactants>
-          <speciesReference species="MAM02519e" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM10041e" stoichiometry="1" constant="true"/>
-        </listOfReactants>
-        <listOfProducts>
-          <speciesReference species="MAM02519c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM10041c" stoichiometry="1" constant="true"/>
-        </listOfProducts>
-        <fbc:geneProductAssociation>
-          <fbc:geneProductRef fbc:geneProduct="CG11655"/>
-        </fbc:geneProductAssociation>
-      </reaction>
-      <reaction metaid="MAR10128" sboTerm="SBO:0000176" id="MAR10128" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
-        <notes>
-          <body xmlns="http://www.w3.org/1999/xhtml">
-            <p>Confidence Level: 0</p>
-          </body>
-        </notes>
-        <annotation>
-          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#meta_MAR10128">
-              <bqbiol:is>
-                <rdf:Bag/>
-              </bqbiol:is>
-            </rdf:Description>
-          </rdf:RDF>
-        </annotation>
-        <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03129c" stoichiometry="1" constant="true"/>
-        </listOfReactants>
-        <listOfProducts>
-          <speciesReference species="MAM01334c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM10042c" stoichiometry="1" constant="true"/>
-        </listOfProducts>
-      </reaction>
-      <reaction metaid="MAR10129" sboTerm="SBO:0000176" id="MAR10129" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
-        <notes>
-          <body xmlns="http://www.w3.org/1999/xhtml">
-            <p>Confidence Level: 0</p>
+            <p>Confidence Level: 4</p>
+            <p>AUTHORS: PMID:32156684</p>
           </body>
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#meta_MAR10129">
+            <rdf:Description rdf:about="#meta_R_MAR13083">
               <bqbiol:is>
                 <rdf:Bag/>
               </bqbiol:is>
@@ -505593,16 +504675,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM10042c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02157c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03129c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02961c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10130" sboTerm="SBO:0000176" id="MAR10130" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR13084" sboTerm="SBO:0000185" id="R_MAR13084" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -505610,7 +504694,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#meta_MAR10130">
+            <rdf:Description rdf:about="#meta_R_MAR13084">
               <bqbiol:is>
                 <rdf:Bag/>
               </bqbiol:is>
@@ -505618,15 +504702,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02961c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM10042c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01639c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02966c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01639n" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10131" sboTerm="SBO:0000176" id="MAR10131" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR13085" sboTerm="SBO:0000185" id="R_MAR13085" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -505634,7 +504716,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#meta_MAR10131">
+            <rdf:Description rdf:about="#meta_R_MAR13085">
               <bqbiol:is>
                 <rdf:Bag/>
               </bqbiol:is>
@@ -505642,44 +504724,22 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01986c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM10042c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01686c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01597c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02004c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01686n" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR10132" sboTerm="SBO:0000627" id="MAR10132" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR13086" sboTerm="SBO:0000185" id="R_MAR13086" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
-            <p>Confidence Level: 0</p>
-            <p>AUTHORS: PMID17404808;PMID19498215</p>
-          </body>
-        </notes>
-        <annotation>
-          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#meta_MAR10132">
-              <bqbiol:is>
-                <rdf:Bag/>
-              </bqbiol:is>
-            </rdf:Description>
-          </rdf:RDF>
-        </annotation>
-        <listOfReactants>
-          <speciesReference species="MAM10041e" stoichiometry="1" constant="true"/>
-        </listOfReactants>
-      </reaction>
-      <reaction metaid="MAR13083" sboTerm="SBO:0000176" id="MAR13083" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
-        <notes>
-          <body xmlns="http://www.w3.org/1999/xhtml">
-            <p>Confidence Level: 4</p>
-            <p>AUTHORS: PMID:32156684</p>
+            <p>Confidence Level: 2</p>
+            <p>AUTHORS: PMID:25836925</p>
           </body>
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#meta_MAR13083">
+            <rdf:Description rdf:about="#meta_R_MAR13086">
               <bqbiol:is>
                 <rdf:Bag/>
               </bqbiol:is>
@@ -505687,18 +504747,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02157c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02847n" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02961c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02847c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR20001" sboTerm="SBO:0000176" id="MAR20001" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR20001" sboTerm="SBO:0000176" id="R_MAR20001" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 4</p>
@@ -505707,7 +504762,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR20001">
+            <rdf:Description rdf:about="#R_MAR20001">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.103"/>
@@ -505720,19 +504775,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02552m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02993m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02993m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02321m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02321m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG5955"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR20003" sboTerm="SBO:0000176" id="MAR20003" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR20003" sboTerm="SBO:0000176" id="R_MAR20003" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 2</p>
@@ -505740,7 +504795,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR20003">
+            <rdf:Description rdf:about="#R_MAR20003">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.1.2.48"/>
@@ -505753,17 +504808,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM20003c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM20003c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01249c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01986c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01249c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01986c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG10184"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR20004" sboTerm="SBO:0000176" id="MAR20004" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR20004" sboTerm="SBO:0000176" id="R_MAR20004" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 4</p>
@@ -505772,7 +504827,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR20004">
+            <rdf:Description rdf:about="#R_MAR20004">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.5.2.17"/>
@@ -505784,18 +504839,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01104x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01104x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM10018x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM10018x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG30016"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR20005" sboTerm="SBO:0000185" id="MAR20005" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR20005" sboTerm="SBO:0000185" id="R_MAR20005" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -505803,7 +504858,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#meta_MAR20005">
+            <rdf:Description rdf:about="#meta_R_MAR20005">
               <bqbiol:is>
                 <rdf:Bag/>
               </bqbiol:is>
@@ -505811,13 +504866,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01104x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01104x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01104c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01104c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR20006" sboTerm="SBO:0000185" id="MAR20006" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR20006" sboTerm="SBO:0000185" id="R_MAR20006" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -505825,7 +504880,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#meta_MAR20006">
+            <rdf:Description rdf:about="#meta_R_MAR20006">
               <bqbiol:is>
                 <rdf:Bag/>
               </bqbiol:is>
@@ -505833,13 +504888,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM10018x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM10018x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM10018c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM10018c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR20007" sboTerm="SBO:0000176" id="MAR20007" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR20007" sboTerm="SBO:0000176" id="R_MAR20007" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 2</p>
@@ -505847,7 +504902,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR20007">
+            <rdf:Description rdf:about="#R_MAR20007">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.7.3.3"/>
@@ -505859,20 +504914,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040x" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02630x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM20005x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040x" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02630x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM20005x" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01596x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02041x" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM20006x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01596x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041x" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM20006x" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Uro"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR20013" sboTerm="SBO:0000176" id="MAR20013" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR20013" sboTerm="SBO:0000176" id="R_MAR20013" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 2</p>
@@ -505880,7 +504935,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR20013">
+            <rdf:Description rdf:about="#R_MAR20013">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.1.83"/>
@@ -505893,19 +504948,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM20010c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM20010c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02807c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02807c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="CG2794"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR20014" sboTerm="SBO:0000176" id="MAR20014" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR20014" sboTerm="SBO:0000176" id="R_MAR20014" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 2</p>
@@ -505913,7 +504968,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR20014">
+            <rdf:Description rdf:about="#R_MAR20014">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.19.21"/>
@@ -505925,21 +504980,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01450c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02552c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02805c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02552c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02805c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="nvd"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR20015" sboTerm="SBO:0000176" id="MAR20015" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR20015" sboTerm="SBO:0000176" id="R_MAR20015" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 2</p>
@@ -505947,7 +505002,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR20015">
+            <rdf:Description rdf:about="#R_MAR20015">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.19.21"/>
@@ -505959,21 +505014,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01450c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02805c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02805c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="nvd"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR20017" sboTerm="SBO:0000176" id="MAR20017" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR20017" sboTerm="SBO:0000176" id="R_MAR20017" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 2</p>
@@ -505981,7 +505036,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR20017">
+            <rdf:Description rdf:about="#R_MAR20017">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/14.1.14"/>
@@ -505993,20 +505048,20 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01306c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01975c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01306c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01975c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01974c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02552c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01974c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02552c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="GS"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR20035" sboTerm="SBO:0000176" id="MAR20035" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR20035" sboTerm="SBO:0000176" id="R_MAR20035" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 2</p>
@@ -506014,7 +505069,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR20035">
+            <rdf:Description rdf:about="#R_MAR20035">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.3.3"/>
@@ -506026,13 +505081,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01365c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01371c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01365c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM20027c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01285c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM20027c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -506040,7 +505095,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR20036" sboTerm="SBO:0000176" id="MAR20036" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR20036" sboTerm="SBO:0000176" id="R_MAR20036" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 2</p>
@@ -506048,7 +505103,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR20036">
+            <rdf:Description rdf:about="#R_MAR20036">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.214"/>
@@ -506059,19 +505114,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM20028r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01950r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM20028r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01950r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM20029r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01948r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM20029r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01948r" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="FucTA"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR20037" sboTerm="SBO:0000176" id="MAR20037" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR20037" sboTerm="SBO:0000176" id="R_MAR20037" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 2</p>
@@ -506079,7 +505134,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR20037">
+            <rdf:Description rdf:about="#R_MAR20037">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.3.16"/>
@@ -506091,18 +505146,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM20030c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM20030c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02041c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM20031c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM20031c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Eo"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR20038" sboTerm="SBO:0000176" id="MAR20038" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR20038" sboTerm="SBO:0000176" id="R_MAR20038" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 2</p>
@@ -506110,7 +505165,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR20038">
+            <rdf:Description rdf:about="#R_MAR20038">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.99.22"/>
@@ -506122,19 +505177,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM20030c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM20030c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM20032c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM20032c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="shd"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR20039" sboTerm="SBO:0000176" id="MAR20039" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR20039" sboTerm="SBO:0000176" id="R_MAR20039" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 2</p>
@@ -506142,7 +505197,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR20039">
+            <rdf:Description rdf:about="#R_MAR20039">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R08132"/>
@@ -506153,10 +505208,10 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02805c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02805c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM20037c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM20037c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -506165,7 +505220,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR20040" sboTerm="SBO:0000176" id="MAR20040" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR20040" sboTerm="SBO:0000176" id="R_MAR20040" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 2</p>
@@ -506173,7 +505228,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR20040">
+            <rdf:Description rdf:about="#R_MAR20040">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.14.-"/>
@@ -506186,18 +505241,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM20033c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM20033c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM20034c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM20034c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="phm"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR20041" sboTerm="SBO:0000176" id="MAR20041" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR20041" sboTerm="SBO:0000176" id="R_MAR20041" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 2</p>
@@ -506205,7 +505260,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR20041">
+            <rdf:Description rdf:about="#R_MAR20041">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R08134"/>
@@ -506217,19 +505272,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM20034c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM20034c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM20036c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM20036c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="dib"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR20042" sboTerm="SBO:0000176" id="MAR20042" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR20042" sboTerm="SBO:0000176" id="R_MAR20042" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 2</p>
@@ -506237,7 +505292,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR20042">
+            <rdf:Description rdf:about="#R_MAR20042">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R08135"/>
@@ -506249,19 +505304,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM20036c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM20036c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM20030c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM20030c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="sad"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR20043" sboTerm="SBO:0000176" id="MAR20043" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR20043" sboTerm="SBO:0000176" id="R_MAR20043" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 2</p>
@@ -506269,7 +505324,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR20043">
+            <rdf:Description rdf:about="#R_MAR20043">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R08136"/>
@@ -506281,18 +505336,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM20037c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM20037c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM20038c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM20038c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="phm"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR20044" sboTerm="SBO:0000176" id="MAR20044" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR20044" sboTerm="SBO:0000176" id="R_MAR20044" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 2</p>
@@ -506300,7 +505355,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR20044">
+            <rdf:Description rdf:about="#R_MAR20044">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R08138"/>
@@ -506312,16 +505367,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM20038c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM20038c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM20039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM20039c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR20045" sboTerm="SBO:0000176" id="MAR20045" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR20045" sboTerm="SBO:0000176" id="R_MAR20045" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 2</p>
@@ -506329,7 +505384,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR20045">
+            <rdf:Description rdf:about="#R_MAR20045">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.15.-"/>
@@ -506342,19 +505397,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM20039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM20039c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM20031c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM20031c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="sad"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR20046" sboTerm="SBO:0000176" id="MAR20046" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR20046" sboTerm="SBO:0000176" id="R_MAR20046" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 2</p>
@@ -506362,7 +505417,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR20046">
+            <rdf:Description rdf:about="#R_MAR20046">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R08143"/>
@@ -506373,16 +505428,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM20032c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM20032c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM20041c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM20041c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Cyp18a1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR20047" sboTerm="SBO:0000176" id="MAR20047" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR20047" sboTerm="SBO:0000176" id="R_MAR20047" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 2</p>
@@ -506390,7 +505445,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR20047">
+            <rdf:Description rdf:about="#R_MAR20047">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.3.-"/>
@@ -506402,12 +505457,12 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM20042c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM20042c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02751c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM20043c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM20043c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -506417,7 +505472,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR20048" sboTerm="SBO:0000176" id="MAR20048" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR20048" sboTerm="SBO:0000176" id="R_MAR20048" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 2</p>
@@ -506425,7 +505480,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR20048">
+            <rdf:Description rdf:about="#R_MAR20048">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.216"/>
@@ -506437,13 +505492,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM20043c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM20043c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM20044c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM20044c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:or>
@@ -506455,7 +505510,7 @@
           </fbc:or>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR20049" sboTerm="SBO:0000176" id="MAR20049" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR20049" sboTerm="SBO:0000176" id="R_MAR20049" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 2</p>
@@ -506463,7 +505518,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR20049">
+            <rdf:Description rdf:about="#R_MAR20049">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.59"/>
@@ -506475,19 +505530,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM20050c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM20050c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02470c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM20051c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02470c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM20051c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Jhe"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR20050" sboTerm="SBO:0000176" id="MAR20050" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR20050" sboTerm="SBO:0000176" id="R_MAR20050" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 2</p>
@@ -506495,7 +505550,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR20050">
+            <rdf:Description rdf:about="#R_MAR20050">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.1.1.325"/>
@@ -506507,18 +505562,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02877c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM20051c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02877c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM20051c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02871c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM20050c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02871c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM20050c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="jhamt"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR20051" sboTerm="SBO:0000176" id="MAR20051" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR20051" sboTerm="SBO:0000176" id="R_MAR20051" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 2</p>
@@ -506526,7 +505581,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR20051">
+            <rdf:Description rdf:about="#R_MAR20051">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.1.1.325"/>
@@ -506538,18 +505593,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02877c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM20052c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02877c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM20052c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02871c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM20053c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02871c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM20053c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="jhamt"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR20052" sboTerm="SBO:0000176" id="MAR20052" reversible="true" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR20052" sboTerm="SBO:0000176" id="R_MAR20052" reversible="true" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 2</p>
@@ -506557,7 +505612,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR20052">
+            <rdf:Description rdf:about="#R_MAR20052">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.15"/>
@@ -506569,18 +505624,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03108c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM20045c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03108c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM20045c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM03106c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM20046c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03106c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM20046c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Tps1"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR20053" sboTerm="SBO:0000176" id="MAR20053" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR20053" sboTerm="SBO:0000176" id="R_MAR20053" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 2</p>
@@ -506588,7 +505643,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR20053">
+            <rdf:Description rdf:about="#R_MAR20053">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.3.3.2"/>
@@ -506600,18 +505655,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03088c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM20047c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03088c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM20047c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM20048c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM20048c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="Ssl2"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR20054" sboTerm="SBO:0000176" id="MAR20054" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR20054" sboTerm="SBO:0000176" id="R_MAR20054" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 2</p>
@@ -506619,7 +505674,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR20054">
+            <rdf:Description rdf:about="#R_MAR20054">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/4.1.1.107"/>
@@ -506631,21 +505686,21 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02354c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02354c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00728c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01596c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02041c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02578c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00728c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01596c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02041c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02578c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="amd"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR20055" sboTerm="SBO:0000176" id="MAR20055" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR20055" sboTerm="SBO:0000176" id="R_MAR20055" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 2</p>
@@ -506653,7 +505708,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR20055">
+            <rdf:Description rdf:about="#R_MAR20055">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.5.4.1"/>
@@ -506665,51 +505720,51 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01170c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02026c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM01170c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02026c" stoichiometry="2" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02027c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM20049c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02027c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM20049c" stoichiometry="1" constant="true"/>
         </listOfProducts>
         <fbc:geneProductAssociation>
           <fbc:geneProductRef fbc:geneProduct="se"/>
         </fbc:geneProductAssociation>
       </reaction>
-      <reaction metaid="MAR00114" sboTerm="SBO:0000176" id="MAR00114" name="C-3 Sterol Dehydrogenase (4-Methylzymosterol)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00113" sboTerm="SBO:0000176" id="R_MAR00113" name="C-3 Sterol Dehydrogenase (4-Methylzymosterol)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
-            <p>AUTHORS: PMID:12829805</p>
+            <p>AUTHORS: PMID:10710235;PMID:14506130</p>
             <p>NOTES: reaction added by gap filling</p>
           </body>
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00114">
+            <rdf:Description rdf:about="#R_MAR00113">
               <bqbiol:is>
                 <rdf:Bag>
-                  <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/C3STDH1r"/>
-                  <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR96410"/>
-                  <rdf:li rdf:resource="https://identifiers.org/vmhreaction/C3STDH1r"/>
+                  <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/C3STDH1Pr"/>
+                  <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR95038"/>
+                  <rdf:li rdf:resource="https://identifiers.org/vmhreaction/C3STDH1Pr"/>
                 </rdf:Bag>
               </bqbiol:is>
             </rdf:Description>
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02552r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00953r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00953r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01596r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00809r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01596r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00809r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR00118" sboTerm="SBO:0000176" id="MAR00118" name="C-4 Methyl Sterol Oxidase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00118" sboTerm="SBO:0000176" id="R_MAR00118" name="C-4 Methyl Sterol Oxidase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -506718,7 +505773,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00118">
+            <rdf:Description rdf:about="#R_MAR00118">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/C4STMO2r"/>
@@ -506730,50 +505785,81 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02552r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00809r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00809r" stoichiometry="1" constant="true"/>
+        </listOfReactants>
+        <listOfProducts>
+          <speciesReference species="M_MAM01596r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM04082r" stoichiometry="1" constant="true"/>
+        </listOfProducts>
+      </reaction>
+      <reaction metaid="R_MAR00222" sboTerm="SBO:0000176" id="R_MAR00222" name="24-Dehydrocholesterol Reductase [Precursor]" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+        <notes>
+          <body xmlns="http://www.w3.org/1999/xhtml">
+            <p>Confidence Level: 0</p>
+            <p>AUTHORS: PMID:17984220;PMID:19520779;PMID:19520780</p>
+            <p>NOTES: reaction added by gap filling</p>
+          </body>
+        </notes>
+        <annotation>
+          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
+            <rdf:Description rdf:about="#R_MAR00222">
+              <bqbiol:is>
+                <rdf:Bag>
+                  <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.42"/>
+                  <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/DHCR243r"/>
+                  <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR97382"/>
+                  <rdf:li rdf:resource="https://identifiers.org/vmhreaction/DHCR243r"/>
+                </rdf:Bag>
+              </bqbiol:is>
+            </rdf:Description>
+          </rdf:RDF>
+        </annotation>
+        <listOfReactants>
+          <speciesReference species="M_MAM01803r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01675r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01596r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM04082r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01450r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01802r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR00228" sboTerm="SBO:0000176" id="MAR00228" name="7-Dehydrocholesterol Reductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00227" sboTerm="SBO:0000176" id="R_MAR00227" name="7-Dehydrocholesterol Reductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
-            <p>AUTHORS: PMID:15670717</p>
+            <p>AUTHORS: PMID:9465114</p>
             <p>NOTES: reaction added by gap filling</p>
           </body>
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00228">
+            <rdf:Description rdf:about="#R_MAR00227">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.1.21"/>
-                  <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/DHCR72r"/>
-                  <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR97384"/>
-                  <rdf:li rdf:resource="https://identifiers.org/vmhreaction/DHCR72r"/>
+                  <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/DHCR71r"/>
+                  <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR97383"/>
+                  <rdf:li rdf:resource="https://identifiers.org/vmhreaction/DHCR71r"/>
                 </rdf:Bag>
               </bqbiol:is>
             </rdf:Description>
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02805r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01189r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01450r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01675r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR00443" sboTerm="SBO:0000176" id="MAR00443" name="3-Beta-Hydroxysteroid-Delta (8), Delta (7)-Isomerase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR00443" sboTerm="SBO:0000176" id="R_MAR00443" name="3-Beta-Hydroxysteroid-Delta (8), Delta (7)-Isomerase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -506783,7 +505869,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR00443">
+            <rdf:Description rdf:about="#R_MAR00443">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/5.3.3.5"/>
@@ -506796,13 +505882,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM03158r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03158r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01066r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01066r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01498" sboTerm="SBO:0000176" id="MAR01498" name="Lanosterol Synthase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01498" sboTerm="SBO:0000176" id="R_MAR01498" name="Lanosterol Synthase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -506812,7 +505898,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01498">
+            <rdf:Description rdf:about="#R_MAR01498">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/5.4.99.7"/>
@@ -506825,13 +505911,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02932r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02932r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02336r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02336r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01510" sboTerm="SBO:0000176" id="MAR01510" name="Lathosterol Oxidase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01508" sboTerm="SBO:0000176" id="R_MAR01508" name="Lathosterol Oxidase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -506841,31 +505927,31 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01510">
+            <rdf:Description rdf:about="#R_MAR01508">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.3.2"/>
-                  <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/LSTO2r"/>
-                  <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR101245"/>
-                  <rdf:li rdf:resource="https://identifiers.org/vmhreaction/LSTO2r"/>
+                  <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/LSTO1r"/>
+                  <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR101244"/>
+                  <rdf:li rdf:resource="https://identifiers.org/vmhreaction/LSTO1r"/>
                 </rdf:Bag>
               </bqbiol:is>
             </rdf:Description>
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02343r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01066r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040r" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02554r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02805r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02554r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01189r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01714" sboTerm="SBO:0000176" id="MAR01714" name="Squalene Epoxidase, Endoplasmic Reticular (NADP)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01714" sboTerm="SBO:0000176" id="R_MAR01714" name="Squalene Epoxidase, Endoplasmic Reticular (NADP)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -506875,7 +505961,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01714">
+            <rdf:Description rdf:about="#R_MAR01714">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.99.7"/>
@@ -506888,18 +505974,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02933r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02933r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02932r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02932r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR01715" sboTerm="SBO:0000176" id="MAR01715" name="Squalene Synthase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR01715" sboTerm="SBO:0000176" id="R_MAR01715" name="Squalene Synthase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -506909,7 +505995,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR01715">
+            <rdf:Description rdf:about="#R_MAR01715">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.5.1.21"/>
@@ -506922,17 +506008,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01806r" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01806r" stoichiometry="2" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02554r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02759r" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02933r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02759r" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02933r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR02200" sboTerm="SBO:0000176" id="MAR02200" name="Lanosterol, NADPH:Oxygen Oxidoreductase (14-Methyl Cleaving)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR02200" sboTerm="SBO:0000176" id="R_MAR02200" name="Lanosterol, NADPH:Oxygen Oxidoreductase (14-Methyl Cleaving)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -506942,7 +506028,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02200">
+            <rdf:Description rdf:about="#R_MAR02200">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.13.70"/>
@@ -506955,51 +506041,19 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039r" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02555r" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM02630r" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM02336r" stoichiometry="1" constant="true"/>
-        </listOfReactants>
-        <listOfProducts>
-          <speciesReference species="MAM01833r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040r" stoichiometry="4" constant="true"/>
-          <speciesReference species="MAM02554r" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM00941r" stoichiometry="1" constant="true"/>
-        </listOfProducts>
-      </reaction>
-      <reaction metaid="MAR02206" sboTerm="SBO:0000176" id="MAR02206" name="Lanosterol D24-Reductase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
-        <notes>
-          <body xmlns="http://www.w3.org/1999/xhtml">
-            <p>Confidence Level: 0</p>
-            <p>AUTHORS: PMID:7946524</p>
-            <p>NOTES: reaction added by gap filling</p>
-          </body>
-        </notes>
-        <annotation>
-          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR02206">
-              <bqbiol:is>
-                <rdf:Bag>
-                  <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.1.72"/>
-                  <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/r0783"/>
-                  <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR96690"/>
-                  <rdf:li rdf:resource="https://identifiers.org/vmhreaction/r0783"/>
-                </rdf:Bag>
-              </bqbiol:is>
-            </rdf:Description>
-          </rdf:RDF>
-        </annotation>
-        <listOfReactants>
-          <speciesReference species="MAM02554r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02343r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02555r" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM02630r" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM02336r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01066r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01833r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="4" constant="true"/>
+          <speciesReference species="M_MAM02554r" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM00941r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR05151" sboTerm="SBO:0000176" id="MAR05151" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR05151" sboTerm="SBO:0000176" id="R_MAR05151" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -507008,7 +506062,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR05151">
+            <rdf:Description rdf:about="#R_MAR05151">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/vmhreaction/HMR_5151"/>
@@ -507019,89 +506073,91 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371c" stoichiometry="1827" constant="true"/>
-          <speciesReference species="MAM02006c" stoichiometry="13" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1828" constant="true"/>
-          <speciesReference species="MAM02335c" stoichiometry="63" constant="true"/>
-          <speciesReference species="MAM02340c" stoichiometry="27" constant="true"/>
-          <speciesReference species="MAM02341c" stoichiometry="17" constant="true"/>
-          <speciesReference species="MAM02342c" stoichiometry="36" constant="true"/>
-          <speciesReference species="MAM02351c" stoichiometry="35" constant="true"/>
-          <speciesReference species="MAM02376c" stoichiometry="20" constant="true"/>
-          <speciesReference species="MAM02377c" stoichiometry="62" constant="true"/>
-          <speciesReference species="MAM02380c" stoichiometry="16" constant="true"/>
-          <speciesReference species="MAM02401c" stoichiometry="9" constant="true"/>
-          <speciesReference species="MAM02404c" stoichiometry="64" constant="true"/>
-          <speciesReference species="MAM02405c" stoichiometry="60" constant="true"/>
-          <speciesReference species="MAM02408c" stoichiometry="7" constant="true"/>
-          <speciesReference species="MAM02412c" stoichiometry="35" constant="true"/>
-          <speciesReference species="MAM02415c" stoichiometry="24" constant="true"/>
-          <speciesReference species="MAM02416c" stoichiometry="28" constant="true"/>
-          <speciesReference species="MAM02419c" stoichiometry="29" constant="true"/>
-          <speciesReference species="MAM02420c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02421c" stoichiometry="19" constant="true"/>
-          <speciesReference species="MAM02423c" stoichiometry="43" constant="true"/>
-        </listOfReactants>
-        <listOfProducts>
-          <speciesReference species="MAM01285c" stoichiometry="1827" constant="true"/>
-          <speciesReference species="MAM01308c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="2425" constant="true"/>
-          <speciesReference species="MAM02751c" stoichiometry="1827" constant="true"/>
-          <speciesReference species="MAM03063c" stoichiometry="63" constant="true"/>
-          <speciesReference species="MAM03064c" stoichiometry="27" constant="true"/>
-          <speciesReference species="MAM03065c" stoichiometry="17" constant="true"/>
-          <speciesReference species="MAM03066c" stoichiometry="36" constant="true"/>
-          <speciesReference species="MAM03067c" stoichiometry="35" constant="true"/>
-          <speciesReference species="MAM03068c" stoichiometry="20" constant="true"/>
-          <speciesReference species="MAM03069c" stoichiometry="62" constant="true"/>
-          <speciesReference species="MAM03070c" stoichiometry="13" constant="true"/>
-          <speciesReference species="MAM03071c" stoichiometry="16" constant="true"/>
-          <speciesReference species="MAM03072c" stoichiometry="9" constant="true"/>
-          <speciesReference species="MAM03073c" stoichiometry="64" constant="true"/>
-          <speciesReference species="MAM03074c" stoichiometry="60" constant="true"/>
-          <speciesReference species="MAM03075c" stoichiometry="7" constant="true"/>
-          <speciesReference species="MAM03076c" stoichiometry="35" constant="true"/>
-          <speciesReference species="MAM03077c" stoichiometry="24" constant="true"/>
-          <speciesReference species="MAM03078c" stoichiometry="28" constant="true"/>
-          <speciesReference species="MAM03079c" stoichiometry="29" constant="true"/>
-          <speciesReference species="MAM03080c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM03081c" stoichiometry="19" constant="true"/>
-          <speciesReference species="MAM03082c" stoichiometry="43" constant="true"/>
-        </listOfProducts>
-      </reaction>
-      <reaction metaid="MAR04497" sboTerm="SBO:0000176" id="MAR04497" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
-        <notes>
-          <body xmlns="http://www.w3.org/1999/xhtml">
-            <p>Confidence Level: 0</p>
-            <p>AUTHORS: PMID:13672942</p>
+          <speciesReference species="M_MAM01371c" stoichiometry="1827" constant="true"/>
+          <speciesReference species="M_MAM02006c" stoichiometry="13" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1828" constant="true"/>
+          <speciesReference species="M_MAM02335c" stoichiometry="63" constant="true"/>
+          <speciesReference species="M_MAM02340c" stoichiometry="27" constant="true"/>
+          <speciesReference species="M_MAM02341c" stoichiometry="17" constant="true"/>
+          <speciesReference species="M_MAM02342c" stoichiometry="36" constant="true"/>
+          <speciesReference species="M_MAM02351c" stoichiometry="35" constant="true"/>
+          <speciesReference species="M_MAM02376c" stoichiometry="20" constant="true"/>
+          <speciesReference species="M_MAM02377c" stoichiometry="62" constant="true"/>
+          <speciesReference species="M_MAM02380c" stoichiometry="16" constant="true"/>
+          <speciesReference species="M_MAM02401c" stoichiometry="9" constant="true"/>
+          <speciesReference species="M_MAM02404c" stoichiometry="64" constant="true"/>
+          <speciesReference species="M_MAM02405c" stoichiometry="60" constant="true"/>
+          <speciesReference species="M_MAM02408c" stoichiometry="7" constant="true"/>
+          <speciesReference species="M_MAM02412c" stoichiometry="35" constant="true"/>
+          <speciesReference species="M_MAM02415c" stoichiometry="24" constant="true"/>
+          <speciesReference species="M_MAM02416c" stoichiometry="28" constant="true"/>
+          <speciesReference species="M_MAM02419c" stoichiometry="29" constant="true"/>
+          <speciesReference species="M_MAM02420c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02421c" stoichiometry="19" constant="true"/>
+          <speciesReference species="M_MAM02423c" stoichiometry="43" constant="true"/>
+        </listOfReactants>
+        <listOfProducts>
+          <speciesReference species="M_MAM01285c" stoichiometry="1827" constant="true"/>
+          <speciesReference species="M_MAM01308c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="2425" constant="true"/>
+          <speciesReference species="M_MAM02751c" stoichiometry="1827" constant="true"/>
+          <speciesReference species="M_MAM03063c" stoichiometry="63" constant="true"/>
+          <speciesReference species="M_MAM03064c" stoichiometry="27" constant="true"/>
+          <speciesReference species="M_MAM03065c" stoichiometry="17" constant="true"/>
+          <speciesReference species="M_MAM03066c" stoichiometry="36" constant="true"/>
+          <speciesReference species="M_MAM03067c" stoichiometry="35" constant="true"/>
+          <speciesReference species="M_MAM03068c" stoichiometry="20" constant="true"/>
+          <speciesReference species="M_MAM03069c" stoichiometry="62" constant="true"/>
+          <speciesReference species="M_MAM03070c" stoichiometry="13" constant="true"/>
+          <speciesReference species="M_MAM03071c" stoichiometry="16" constant="true"/>
+          <speciesReference species="M_MAM03072c" stoichiometry="9" constant="true"/>
+          <speciesReference species="M_MAM03073c" stoichiometry="64" constant="true"/>
+          <speciesReference species="M_MAM03074c" stoichiometry="60" constant="true"/>
+          <speciesReference species="M_MAM03075c" stoichiometry="7" constant="true"/>
+          <speciesReference species="M_MAM03076c" stoichiometry="35" constant="true"/>
+          <speciesReference species="M_MAM03077c" stoichiometry="24" constant="true"/>
+          <speciesReference species="M_MAM03078c" stoichiometry="28" constant="true"/>
+          <speciesReference species="M_MAM03079c" stoichiometry="29" constant="true"/>
+          <speciesReference species="M_MAM03080c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM03081c" stoichiometry="19" constant="true"/>
+          <speciesReference species="M_MAM03082c" stoichiometry="43" constant="true"/>
+        </listOfProducts>
+      </reaction>
+      <reaction metaid="R_MAR04106" sboTerm="SBO:0000176" id="R_MAR04106" name="malonyl-CoA carboxy-lyase (acetyl-CoA-forming)" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+        <notes>
+          <body xmlns="http://www.w3.org/1999/xhtml">
+            <p>Confidence Level: 0</p>
+            <p>AUTHORS: PMID:101148;PMID:10455107;PMID:15003260;PMID:4180063;PMID:4731972;PMID:5578610;PMID:9869665</p>
             <p>NOTES: reaction added by gap filling</p>
           </body>
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04497">
+            <rdf:Description rdf:about="#R_MAR04106">
               <bqbiol:is>
                 <rdf:Bag>
-                  <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.59"/>
-                  <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R01608"/>
-                  <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR94902"/>
-                  <rdf:li rdf:resource="https://identifiers.org/vmhreaction/r0365"/>
+                  <rdf:li rdf:resource="https://identifiers.org/ec-code/4.1.1.9"/>
+                  <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/MCDm"/>
+                  <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R00233"/>
+                  <rdf:li rdf:resource="https://identifiers.org/metanetx.reaction/MNXR101412"/>
+                  <rdf:li rdf:resource="https://identifiers.org/vmhreaction/MCDm"/>
+                  <rdf:li rdf:resource="https://identifiers.org/rhea/18782"/>
+                  <rdf:li rdf:resource="https://identifiers.org/rhea/18781"/>
                 </rdf:Bag>
               </bqbiol:is>
             </rdf:Description>
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02142m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02444m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00900m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02553m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01261m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01596m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR04861" sboTerm="SBO:0000185" id="MAR04861" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR04861" sboTerm="SBO:0000185" id="R_MAR04861" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -507111,7 +506167,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR04861">
+            <rdf:Description rdf:about="#R_MAR04861">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/INSTt2"/>
@@ -507124,13 +506180,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02171c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02171c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02171e" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02171e" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR06981" sboTerm="SBO:0000176" id="MAR06981" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06981" sboTerm="SBO:0000176" id="R_MAR06981" name="4-Trimethylammoniobutanal:NAD+ 1-oxidoreductase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -507139,7 +506195,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06981">
+            <rdf:Description rdf:about="#R_MAR06981">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.2.1.47"/>
@@ -507152,17 +506208,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01034c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01034c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01922c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02553c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01922c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02553c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR06634" sboTerm="SBO:0000176" id="MAR06634" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06634" sboTerm="SBO:0000176" id="R_MAR06634" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -507171,7 +506227,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06634">
+            <rdf:Description rdf:about="#R_MAR06634">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.-.-"/>
@@ -507182,18 +506238,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02834c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02834c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01032c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01032c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR06641" sboTerm="SBO:0000176" id="MAR06641" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06641" sboTerm="SBO:0000176" id="R_MAR06641" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -507203,7 +506259,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06641">
+            <rdf:Description rdf:about="#R_MAR06641">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.-.-"/>
@@ -507215,18 +506271,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02834c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02834c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01008c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01008c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR06642" sboTerm="SBO:0000176" id="MAR06642" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06642" sboTerm="SBO:0000176" id="R_MAR06642" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -507236,7 +506292,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06642">
+            <rdf:Description rdf:about="#R_MAR06642">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.-.-"/>
@@ -507248,18 +506304,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02834r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02834r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01008r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01008r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR06649" sboTerm="SBO:0000176" id="MAR06649" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06649" sboTerm="SBO:0000176" id="R_MAR06649" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -507269,7 +506325,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06649">
+            <rdf:Description rdf:about="#R_MAR06649">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.14.1"/>
@@ -507281,18 +506337,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02832r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02832r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01024r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01024r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR06651" sboTerm="SBO:0000176" id="MAR06651" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06651" sboTerm="SBO:0000176" id="R_MAR06651" name="all-trans-Retinal 11-cis-trans-isomerase" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -507301,7 +506357,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06651">
+            <rdf:Description rdf:about="#R_MAR06651">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/RAI1"/>
@@ -507314,13 +506370,13 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02832c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02832c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00290c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00290c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR06654" sboTerm="SBO:0000176" id="MAR06654" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06654" sboTerm="SBO:0000176" id="R_MAR06654" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -507330,7 +506386,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06654">
+            <rdf:Description rdf:about="#R_MAR06654">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.14.1"/>
@@ -507342,18 +506398,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01230r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01230r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01023r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01023r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR06655" sboTerm="SBO:0000176" id="MAR06655" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06655" sboTerm="SBO:0000176" id="R_MAR06655" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -507362,7 +506418,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06655">
+            <rdf:Description rdf:about="#R_MAR06655">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.14.1"/>
@@ -507373,18 +506429,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01023c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01023c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01028c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01028c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR06656" sboTerm="SBO:0000176" id="MAR06656" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06656" sboTerm="SBO:0000176" id="R_MAR06656" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -507393,7 +506449,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06656">
+            <rdf:Description rdf:about="#R_MAR06656">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.14.1"/>
@@ -507404,18 +506460,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01023r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01023r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01028r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040r" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02554r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01028r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02554r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR06664" sboTerm="SBO:0000176" id="MAR06664" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06664" sboTerm="SBO:0000176" id="R_MAR06664" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -507425,7 +506481,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06664">
+            <rdf:Description rdf:about="#R_MAR06664">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.-.-"/>
@@ -507437,18 +506493,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01231c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01231c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01029c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01029c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR06665" sboTerm="SBO:0000176" id="MAR06665" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06665" sboTerm="SBO:0000176" id="R_MAR06665" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -507458,7 +506514,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06665">
+            <rdf:Description rdf:about="#R_MAR06665">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.-.-"/>
@@ -507470,18 +506526,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01231r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01231r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01029r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01029r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR06677" sboTerm="SBO:0000176" id="MAR06677" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06677" sboTerm="SBO:0000176" id="R_MAR06677" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -507491,7 +506547,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06677">
+            <rdf:Description rdf:about="#R_MAR06677">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.-.-"/>
@@ -507503,18 +506559,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00349c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00349c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01022c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01022c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR06678" sboTerm="SBO:0000176" id="MAR06678" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06678" sboTerm="SBO:0000176" id="R_MAR06678" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -507524,7 +506580,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06678">
+            <rdf:Description rdf:about="#R_MAR06678">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.-.-"/>
@@ -507536,18 +506592,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00349r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00349r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01022r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01022r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR06682" sboTerm="SBO:0000176" id="MAR06682" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06682" sboTerm="SBO:0000176" id="R_MAR06682" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -507557,7 +506613,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06682">
+            <rdf:Description rdf:about="#R_MAR06682">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.-.-"/>
@@ -507570,18 +506626,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00350r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00350r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01026r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01026r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR06687" sboTerm="SBO:0000176" id="MAR06687" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06687" sboTerm="SBO:0000176" id="R_MAR06687" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -507591,7 +506647,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06687">
+            <rdf:Description rdf:about="#R_MAR06687">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.-.-"/>
@@ -507604,18 +506660,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00350c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00350c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01060c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01060c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR06700" sboTerm="SBO:0000176" id="MAR06700" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06700" sboTerm="SBO:0000176" id="R_MAR06700" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -507624,7 +506680,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06700">
+            <rdf:Description rdf:about="#R_MAR06700">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.-.-"/>
@@ -507636,18 +506692,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02833c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02833c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00993c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00993c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR06701" sboTerm="SBO:0000176" id="MAR06701" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06701" sboTerm="SBO:0000176" id="R_MAR06701" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -507656,7 +506712,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06701">
+            <rdf:Description rdf:about="#R_MAR06701">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.-.-"/>
@@ -507668,18 +506724,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02833r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02833r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00993r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00993r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR06702" sboTerm="SBO:0000176" id="MAR06702" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06702" sboTerm="SBO:0000176" id="R_MAR06702" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -507688,7 +506744,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06702">
+            <rdf:Description rdf:about="#R_MAR06702">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.-.-"/>
@@ -507699,18 +506755,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00993c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00993c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01031c" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040c" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02554c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01031c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040c" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02554c" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR06703" sboTerm="SBO:0000176" id="MAR06703" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06703" sboTerm="SBO:0000176" id="R_MAR06703" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -507719,7 +506775,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06703">
+            <rdf:Description rdf:about="#R_MAR06703">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.-.-"/>
@@ -507730,18 +506786,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM00993r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00993r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01031r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040r" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02554r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01031r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02554r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08615" sboTerm="SBO:0000176" id="MAR08615" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08615" sboTerm="SBO:0000176" id="R_MAR08615" name="ATP:cob(I)alamin Co-beta-adenosyltransferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -507750,7 +506806,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08615">
+            <rdf:Description rdf:about="#R_MAR08615">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.5.1.17"/>
@@ -507762,16 +506818,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02553m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01599m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02553m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01599m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02552m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01598m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02552m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01598m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR08616" sboTerm="SBO:0000176" id="MAR08616" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR08616" sboTerm="SBO:0000176" id="R_MAR08616" name="ATP:cob(I)alamin Co-beta-adenosyltransferase" reversible="true" fast="false" fbc:lowerFluxBound="FB1N1000" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -507780,7 +506836,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR08616">
+            <rdf:Description rdf:about="#R_MAR08616">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/2.5.1.17"/>
@@ -507794,16 +506850,16 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01371m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM01598m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01371m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01598m" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01600m" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM03057m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01600m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM03057m" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR06465" sboTerm="SBO:0000176" id="MAR06465" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06465" sboTerm="SBO:0000176" id="R_MAR06465" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -507813,7 +506869,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06465">
+            <rdf:Description rdf:about="#R_MAR06465">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.13.30"/>
@@ -507827,18 +506883,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01935r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01935r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00360r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00360r" stoichiometry="1" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR06467" sboTerm="SBO:0000176" id="MAR06467" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06467" sboTerm="SBO:0000176" id="R_MAR06467" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -507848,7 +506904,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06467">
+            <rdf:Description rdf:about="#R_MAR06467">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.13.30"/>
@@ -507860,18 +506916,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555r" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM02630r" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM00360r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555r" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02630r" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM00360r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM00346r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02040r" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM02554r" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM00346r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM02554r" stoichiometry="2" constant="true"/>
         </listOfProducts>
       </reaction>
-      <reaction metaid="MAR06477" sboTerm="SBO:0000176" id="MAR06477" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06477" sboTerm="SBO:0000176" id="R_MAR06477" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
         <notes>
           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -507881,7 +506937,7 @@
         </notes>
         <annotation>
           <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
-            <rdf:Description rdf:about="#MAR06477">
+            <rdf:Description rdf:about="#R_MAR06477">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.13.30"/>
@@ -507893,18 +506949,18 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01327r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02039r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02555r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02630r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01327r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02630r" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM02040r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM02554r" stoichiometry="1" constant="true"/>
-          <speciesReference species="MAM00356r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02554r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM00356r" stoichiometry="1" constant="true"/>
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       </reaction>
-      <reaction metaid="MAR06479" sboTerm="SBO:0000176" id="MAR06479" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
+      <reaction metaid="R_MAR06479" sboTerm="SBO:0000176" id="R_MAR06479" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
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           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -507914,7 +506970,7 @@
         </notes>
         <annotation>
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-            <rdf:Description rdf:about="#MAR06479">
+            <rdf:Description rdf:about="#R_MAR06479">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/ec-code/1.14.13.30"/>
@@ -507926,18 +506982,18 @@
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-          <speciesReference species="MAM02630r" stoichiometry="2" constant="true"/>
-          <speciesReference species="MAM00356r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02039r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02555r" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM02630r" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM00356r" stoichiometry="1" constant="true"/>
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-          <speciesReference species="MAM02040r" stoichiometry="3" constant="true"/>
-          <speciesReference species="MAM02554r" stoichiometry="2" constant="true"/>
+          <speciesReference species="M_MAM00344r" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM02040r" stoichiometry="3" constant="true"/>
+          <speciesReference species="M_MAM02554r" stoichiometry="2" constant="true"/>
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+      <reaction metaid="R_MAR08614" sboTerm="SBO:0000185" id="R_MAR08614" reversible="false" fast="false" fbc:lowerFluxBound="FB2N0" fbc:upperFluxBound="FB3N1000">
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           <body xmlns="http://www.w3.org/1999/xhtml">
             <p>Confidence Level: 0</p>
@@ -507946,7 +507002,7 @@
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-            <rdf:Description rdf:about="#MAR08614">
+            <rdf:Description rdf:about="#R_MAR08614">
               <bqbiol:is>
                 <rdf:Bag>
                   <rdf:li rdf:resource="https://identifiers.org/bigg.reaction/CBLATm"/>
@@ -507958,17 +507014,17 @@
           </rdf:RDF>
         </annotation>
         <listOfReactants>
-          <speciesReference species="MAM01599c" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01599c" stoichiometry="1" constant="true"/>
         </listOfReactants>
         <listOfProducts>
-          <speciesReference species="MAM01599m" stoichiometry="1" constant="true"/>
+          <speciesReference species="M_MAM01599m" stoichiometry="1" constant="true"/>
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     <fbc:listOfObjectives fbc:activeObjective="obj">
       <fbc:objective fbc:id="obj" fbc:type="maximize">
         <fbc:listOfFluxObjectives>
-          <fbc:fluxObjective fbc:reaction="MAR00021" fbc:coefficient="1"/>
+          <fbc:fluxObjective fbc:reaction="R_MAR00021" fbc:coefficient="1"/>
         </fbc:listOfFluxObjectives>
       </fbc:objective>
     </fbc:listOfObjectives>
@@ -509787,12621 +508843,12579 @@
     <groups:listOfGroups>
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         <groups:listOfMembers>
-          <groups:member groups:idRef="MAR00154"/>
-          <groups:member groups:idRef="MAR03476"/>
-          <groups:member groups:idRef="MAR03477"/>
+          <groups:member groups:idRef="R_MAR00154"/>
+          <groups:member groups:idRef="R_MAR03476"/>
+          <groups:member groups:idRef="R_MAR03477"/>
         </groups:listOfMembers>
       </groups:group>
       <groups:group sboTerm="SBO:0000633" groups:id="group2" groups:name="Acylglycerides metabolism" groups:kind="partonomy">
         <groups:listOfMembers>
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-          <groups:member groups:idRef="MAR00005"/>
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-          <groups:member groups:idRef="MAR00683"/>
-          <groups:member groups:idRef="MAR00684"/>
-          <groups:member groups:idRef="MAR07588"/>
+          <groups:member groups:idRef="R_MAR00001"/>
+          <groups:member groups:idRef="R_MAR00002"/>
+          <groups:member groups:idRef="R_MAR00003"/>
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+          <groups:member groups:idRef="R_MAR00671"/>
+          <groups:member groups:idRef="R_MAR00672"/>
+          <groups:member groups:idRef="R_MAR00679"/>
+          <groups:member groups:idRef="R_MAR00680"/>
+          <groups:member groups:idRef="R_MAR00681"/>
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+          <groups:member groups:idRef="R_MAR00683"/>
+          <groups:member groups:idRef="R_MAR00684"/>
+          <groups:member groups:idRef="R_MAR07588"/>
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       <groups:group sboTerm="SBO:0000633" groups:id="group3" groups:name="Alanine, aspartate and glutamate metabolism" groups:kind="partonomy">
         <groups:listOfMembers>
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-          <groups:member groups:idRef="MAR03804"/>
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-          <groups:member groups:idRef="MAR03813"/>
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-          <groups:member groups:idRef="MAR11565"/>
-          <groups:member groups:idRef="MAR20017"/>
+          <groups:member groups:idRef="R_MAR03802"/>
+          <groups:member groups:idRef="R_MAR03804"/>
+          <groups:member groups:idRef="R_MAR03811"/>
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+          <groups:member groups:idRef="R_MAR11565"/>
+          <groups:member groups:idRef="R_MAR20017"/>
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       <groups:group sboTerm="SBO:0000633" groups:id="group4" groups:name="Alkaloids biosynthesis" groups:kind="partonomy">
         <groups:listOfMembers>
-          <groups:member groups:idRef="MAR00447"/>
-          <groups:member groups:idRef="MAR01591"/>
+          <groups:member groups:idRef="R_MAR00447"/>
+          <groups:member groups:idRef="R_MAR01591"/>
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       </groups:group>
       <groups:group sboTerm="SBO:0000633" groups:id="group5" groups:name="Amino sugar and nucleotide sugar metabolism" groups:kind="partonomy">
         <groups:listOfMembers>
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-          <groups:member groups:idRef="MAR08675"/>
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+          <groups:member groups:idRef="R_MAR12966"/>
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diff --git a/model/Fruitfly-GEM.yml b/model/Fruitfly-GEM.yml
index 42db794..f15cfc5 100644
--- a/model/Fruitfly-GEM.yml
+++ b/model/Fruitfly-GEM.yml
@@ -1,10 +1,10 @@
 ---
 !!omap
 - metaData:
-    short_name: "FruitflyGEM"
+    short_name: "Fruitfly-GEM"
     full_name: ""
     version: ""
-    date: "2022-05-03"
+    date: "2022-10-17"
     authors: ""
     email: ""
     organization: ""
@@ -18597,6 +18597,13 @@
       - formula: "C10H12N5O6P"
       - charge: -2
       - inchis: ""
+    - !!omap
+      - id: "MAM01639n"
+      - name: "dAMP"
+      - compartment: "n"
+      - formula: "C10H12N5O6P"
+      - charge: -2
+      - inchis: ""
     - !!omap
       - id: "MAM01640c"
       - name: "D-arginine"
@@ -19311,6 +19318,13 @@
       - formula: "C10H12N5O7P"
       - charge: -2
       - inchis: ""
+    - !!omap
+      - id: "MAM01686n"
+      - name: "dGMP"
+      - compartment: "n"
+      - formula: "C10H12N5O7P"
+      - charge: -2
+      - inchis: ""
     - !!omap
       - id: "MAM01687r"
       - name: "dgpi_prot heparan sulfate"
@@ -33612,6 +33626,13 @@
       - formula: "C15H22O19P3R3"
       - charge: -4
       - inchis: ""
+    - !!omap
+      - id: "MAM02847n"
+      - name: "RNA"
+      - compartment: "n"
+      - formula: "C15H22O19P3R3"
+      - charge: -4
+      - inchis: ""
     - !!omap
       - id: "MAM02848c"
       - name: "RNA-3-terminal-phosphate"
@@ -56789,6 +56810,13 @@
       - formula: "C27H44O"
       - charge: 0
       - inchis: "InChI=1S/C27H44O/c1-18(2)7-6-8-19(3)23-11-12-24-22-10-9-20-17-21(28)13-15-26(20,4)25(22)14-16-27(23,24)5/h7,10,19-21,23-25,28H,6,8-9,11-17H2,1-5H3/t19-,20+,21+,23-,24+,25+,26+,27-/m1/s1"
+    - !!omap
+      - id: "MAM01189r"
+      - name: "7-dehydrodesmosterol"
+      - compartment: "r"
+      - formula: "C27H42O"
+      - charge: 0
+      - inchis: "InChI=1S/C27H42O/c1-18(2)7-6-8-19(3)23-11-12-24-22-10-9-20-17-21(28)13-15-26(20,4)25(22)14-16-27(23,24)5/h7,9-10,19,21,23-25,28H,6,8,11-17H2,1-5H3/t19-,21+,23-,24+,25+,26+,27-/m1/s1"
     - !!omap
       - id: "MAM02932r"
       - name: "squalene 2,3-oxide"
@@ -56834,7 +56862,7 @@
 - reactions:
     - !!omap
       - id: "MAR03905"
-      - name: ""
+      - name: "ethanol:NAD+ oxidoreductase"
       - metabolites: !!omap
           - MAM01249c: 1
           - MAM01796c: -1
@@ -56852,7 +56880,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03907"
-      - name: ""
+      - name: "Ethanol:NADP+ oxidoreductase"
       - metabolites: !!omap
           - MAM01249c: 1
           - MAM01796c: -1
@@ -56870,7 +56898,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04097"
-      - name: ""
+      - name: "Acetate:CoA ligase (AMP-forming)"
       - metabolites: !!omap
           - MAM01252c: -1
           - MAM01261c: 1
@@ -56889,7 +56917,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04099"
-      - name: ""
+      - name: "Acetate:CoA ligase (AMP-forming)"
       - metabolites: !!omap
           - MAM01252m: -1
           - MAM01261m: 1
@@ -56908,7 +56936,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04108"
-      - name: ""
+      - name: "acetyl adenylate:CoA acetyltransferase"
       - metabolites: !!omap
           - MAM01257c: -1
           - MAM01261c: 1
@@ -56926,7 +56954,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04133"
-      - name: ""
+      - name: "ATP:acetate adenylyltransferase"
       - metabolites: !!omap
           - MAM01252c: -1
           - MAM01257c: 1
@@ -56944,7 +56972,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04137"
-      - name: ""
+      - name: "pyruvate:NAD+ 2-oxidoreductase (CoA-acetylating)"
       - metabolites: !!omap
           - MAM01261m: 1
           - MAM01596m: 1
@@ -56963,7 +56991,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04281"
-      - name: ""
+      - name: "(S)-Lactate:NAD+ oxidoreductase"
       - metabolites: !!omap
           - MAM02039x: -1
           - MAM02403x: 1
@@ -56981,7 +57009,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04388"
-      - name: ""
+      - name: "(S)-Lactate:NAD+ oxidoreductase"
       - metabolites: !!omap
           - MAM02039c: -1
           - MAM02403c: 1
@@ -56999,7 +57027,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04283"
-      - name: ""
+      - name: "Acetaldehyde:NADP+ oxidoreductase"
       - metabolites: !!omap
           - MAM01249c: -1
           - MAM01252c: 1
@@ -57018,7 +57046,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR08357"
-      - name: ""
+      - name: "Acetaldehyde:NAD+ oxidoreductase"
       - metabolites: !!omap
           - MAM01249m: -1
           - MAM01252m: 1
@@ -57037,7 +57065,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04379"
-      - name: ""
+      - name: "ATP:D-fructose-6-phosphate 1-phosphotransferase"
       - metabolites: !!omap
           - MAM01285c: 1
           - MAM01371c: -1
@@ -57055,7 +57083,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04301"
-      - name: ""
+      - name: "UTP:D-fructose-6-phosphate 1-phosphotransferase"
       - metabolites: !!omap
           - MAM01841c: 1
           - MAM01845c: -1
@@ -57073,7 +57101,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04355"
-      - name: ""
+      - name: "sedoheptulose 1,7-bisphosphate D-glyceraldehyde-3-phosphate-lyase"
       - metabolites: !!omap
           - MAM01690c: -1
           - MAM01785c: -1
@@ -57089,7 +57117,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04358"
-      - name: ""
+      - name: "ATP:pyruvate 2-O-phosphotransferase"
       - metabolites: !!omap
           - MAM01285c: -1
           - MAM01371c: 1
@@ -57107,7 +57135,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04363"
-      - name: ""
+      - name: "2-phospho-D-glycerate hydro-lyase (phosphoenolpyruvate-forming)"
       - metabolites: !!omap
           - MAM00674c: -1
           - MAM02040c: 1
@@ -57123,7 +57151,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04365"
-      - name: ""
+      - name: "D-phosphoglycerate 2,3-phosphomutase"
       - metabolites: !!omap
           - MAM00674c: -1
           - MAM00913c: 1
@@ -57138,7 +57166,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04368"
-      - name: ""
+      - name: "ATP:3-phospho-D-glycerate 1-phosphotransferase"
       - metabolites: !!omap
           - MAM00247c: -1
           - MAM00913c: 1
@@ -57155,7 +57183,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04370"
-      - name: ""
+      - name: "3-Phospho-D-glyceroyl phosphate phosphohydrolase"
       - metabolites: !!omap
           - MAM00247c: -1
           - MAM00913c: 1
@@ -57173,7 +57201,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04371"
-      - name: ""
+      - name: "3-phospho-D-glycerate 1,2-phosphomutase"
       - metabolites: !!omap
           - MAM00247c: -1
           - MAM00569c: 1
@@ -57189,7 +57217,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04372"
-      - name: ""
+      - name: "2,3-bisphospho-D-glycerate 2-phosphohydrolase"
       - metabolites: !!omap
           - MAM00569c: -1
           - MAM00913c: 1
@@ -57206,7 +57234,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04373"
-      - name: ""
+      - name: "D-glyceraldehyde-3-phosphate:NAD+ oxidoreductase (phosphorylating)"
       - metabolites: !!omap
           - MAM00247c: -1
           - MAM01939c: 1
@@ -57225,7 +57253,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04375"
-      - name: ""
+      - name: "D-fructose-1,6-bisphosphate D-glyceraldehyde-3-phosphate-lyase (glycerone-phosphate-forming)"
       - metabolites: !!omap
           - MAM01690c: -1
           - MAM01841c: 1
@@ -57241,7 +57269,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04377"
-      - name: ""
+      - name: "D-Fructose-1,6-bisphosphate 1-phosphohydrolase"
       - metabolites: !!omap
           - MAM01841c: -1
           - MAM01845c: 1
@@ -57258,7 +57286,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04381"
-      - name: ""
+      - name: "D-glucose-6-phosphate aldose-ketose-isomerase"
       - metabolites: !!omap
           - MAM01845c: -1
           - MAM01968c: 1
@@ -57273,7 +57301,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04391"
-      - name: ""
+      - name: "D-glyceraldehyde-3-phosphate aldose-ketose-isomerase"
       - metabolites: !!omap
           - MAM01690c: -1
           - MAM01939c: 1
@@ -57288,7 +57316,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04394"
-      - name: ""
+      - name: "ATP:D-glucose 6-phosphotransferase"
       - metabolites: !!omap
           - MAM01285c: 1
           - MAM01371c: -1
@@ -57306,7 +57334,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04396"
-      - name: ""
+      - name: "alpha-D-glucose 1,6-phosphomutase"
       - metabolites: !!omap
           - MAM01967c: -1
           - MAM01968c: 1
@@ -57321,7 +57349,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04521"
-      - name: ""
+      - name: "D-Glucose-6-phosphate phosphohydrolase"
       - metabolites: !!omap
           - MAM01965r: 1
           - MAM01968r: -1
@@ -57338,7 +57366,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR06410"
-      - name: ""
+      - name: "pyruvate:[dihydrolipoyllysine-residue acetyltransferase]-lipoyllysine 2-oxidoreductase (decarboxylating, acceptor-acetylating)"
       - metabolites: !!omap
           - MAM01596m: 1
           - MAM02039m: -1
@@ -57356,7 +57384,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR06412"
-      - name: ""
+      - name: "acetyl-CoA:enzyme N6-(dihydrolipoyl)lysine S-acetyltransferase"
       - metabolites: !!omap
           - MAM01261m: 1
           - MAM01597m: -1
@@ -57373,7 +57401,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR07745"
-      - name: ""
+      - name: "D-glucose 1-epimerase"
       - metabolites: !!omap
           - MAM01388c: -1
           - MAM01965c: 1
@@ -57388,7 +57416,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR07747"
-      - name: ""
+      - name: "ADP:D-glucose 6-phosphotransferase"
       - metabolites: !!omap
           - MAM01285c: -1
           - MAM01334c: 1
@@ -57461,7 +57489,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03989"
-      - name: ""
+      - name: "maltose glucohydrolase"
       - metabolites: !!omap
           - MAM01965e: 2
           - MAM02040e: -1
@@ -57477,7 +57505,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04122"
-      - name: ""
+      - name: "UDP-glucose:NAD+ 6-oxidoreductase"
       - metabolites: !!omap
           - MAM02039c: 3
           - MAM02040c: -1
@@ -57496,7 +57524,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04837"
-      - name: ""
+      - name: "alpha,alpha-trehalose glucohydrolase"
       - metabolites: !!omap
           - MAM01965e: 2
           - MAM02040e: -1
@@ -57512,7 +57540,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR05395"
-      - name: ""
+      - name: "UDP-alpha-D-glucose:glycogenin alpha-D-glucosyltransferase"
       - metabolites: !!omap
           - MAM01995c: 1
           - MAM01996c: -1
@@ -57917,7 +57945,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR08587"
-      - name: ""
+      - name: "maltose glucohydrolase"
       - metabolites: !!omap
           - MAM01965c: 2
           - MAM02040c: -1
@@ -57933,7 +57961,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR08585"
-      - name: ""
+      - name: "3-phospho-D-glyceroyl-phosphate:alpha-D-glucose-1-phosphate 6-phosphotransferase"
       - metabolites: !!omap
           - MAM00247c: -1
           - MAM00913c: 1
@@ -57950,7 +57978,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03944"
-      - name: ""
+      - name: "UTP:alpha-D-glucose-1-phosphate uridylyltransferase"
       - metabolites: !!omap
           - MAM01967c: -1
           - MAM02039c: -1
@@ -57968,7 +57996,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04128"
-      - name: ""
+      - name: "UDP-glucose 4-epimerase"
       - metabolites: !!omap
           - MAM03107c: -1
           - MAM03108c: 1
@@ -58001,7 +58029,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04131"
-      - name: ""
+      - name: "UDP-glucose:alpha-D-galactose-1-phosphate uridylyltransferase"
       - metabolites: !!omap
           - MAM01322c: 1
           - MAM01967c: -1
@@ -58018,7 +58046,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04132"
-      - name: ""
+      - name: "UDP-glucose:alpha-D-galactose-1-phosphate uridylyltransferase"
       - metabolites: !!omap
           - MAM01911c: -1
           - MAM01967c: 1
@@ -58035,7 +58063,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04303"
-      - name: ""
+      - name: "sucrose glucohydrolase"
       - metabolites: !!omap
           - MAM01840e: 1
           - MAM01965e: 1
@@ -58052,7 +58080,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04414"
-      - name: ""
+      - name: "ATP:alpha-D-galactose 1-phosphotransferase"
       - metabolites: !!omap
           - MAM01285c: 1
           - MAM01371c: -1
@@ -58070,7 +58098,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04415"
-      - name: ""
+      - name: "Lactose galactohydrolase"
       - metabolites: !!omap
           - MAM01910e: 1
           - MAM01965e: 1
@@ -58087,7 +58115,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04416"
-      - name: ""
+      - name: "Galactosylglycerol galactohydrolase"
       - metabolites: !!omap
           - MAM01910e: 1
           - MAM01913e: -1
@@ -58104,7 +58132,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04774"
-      - name: ""
+      - name: "CTP:D-tagatose 6-phosphate 1-phosphotransferase"
       - metabolites: !!omap
           - MAM01424c: -1
           - MAM01623c: 1
@@ -58122,7 +58150,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04775"
-      - name: ""
+      - name: "ITP:D-tagatose 6-phosphate 1-phosphotransferase"
       - metabolites: !!omap
           - MAM01746c: -1
           - MAM02039c: 1
@@ -58140,7 +58168,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04831"
-      - name: ""
+      - name: "Lactose:(acceptor) 3-oxidoreductase"
       - metabolites: !!omap
           - MAM00812e: 1
           - MAM02039e: 1
@@ -58158,7 +58186,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04832"
-      - name: ""
+      - name: "3-Ketolactose galactohydrolase"
       - metabolites: !!omap
           - MAM00810e: -1
           - MAM00812e: 1
@@ -58175,7 +58203,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR07674"
-      - name: ""
+      - name: "UDP-alpha-D-galactose:D-glucose 4-beta-D-galactosyltransferase"
       - metabolites: !!omap
           - MAM01965g: -1
           - MAM02039g: 1
@@ -58193,7 +58221,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR08761"
-      - name: ""
+      - name: "ATP:D-tagatose 6-phosphotransferase"
       - metabolites: !!omap
           - MAM01285c: 1
           - MAM01371c: -1
@@ -58244,7 +58272,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR08766"
-      - name: ""
+      - name: "galactitol:NADP+ 1-oxidoreductase"
       - metabolites: !!omap
           - MAM01909c: 1
           - MAM01910c: -1
@@ -58262,7 +58290,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR08767"
-      - name: ""
+      - name: "UTP:alpha-D-galactose-1-phosphate uridylyltransferase"
       - metabolites: !!omap
           - MAM01322c: -1
           - MAM02039c: -1
@@ -58280,7 +58308,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR00454"
-      - name: ""
+      - name: "ATP:D-glyceraldehyde 3-phosphotransferase"
       - metabolites: !!omap
           - MAM01285c: 1
           - MAM01371c: -1
@@ -58316,7 +58344,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04310"
-      - name: ""
+      - name: "ATP:D-fructose 1-phosphotransferase"
       - metabolites: !!omap
           - MAM01285c: 1
           - MAM01371c: -1
@@ -58334,7 +58362,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04315"
-      - name: ""
+      - name: "D-Glucitol:NAD+ 2-oxidoreductase"
       - metabolites: !!omap
           - MAM01682c: -1
           - MAM01840c: 1
@@ -58352,7 +58380,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04316"
-      - name: ""
+      - name: "D-Glucitol:NADP+ 1-oxidoreductase"
       - metabolites: !!omap
           - MAM01682c: -1
           - MAM01965c: 1
@@ -58406,7 +58434,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04319"
-      - name: ""
+      - name: "ATP:D-fructose 6-phosphotransferase"
       - metabolites: !!omap
           - MAM01285c: 1
           - MAM01371c: -1
@@ -58442,7 +58470,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04356"
-      - name: ""
+      - name: "D-fructose 1-phosphate D-glyceraldehyde-3-phosphate-lyase"
       - metabolites: !!omap
           - MAM01690c: -1
           - MAM01842c: 1
@@ -58458,7 +58486,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04383"
-      - name: ""
+      - name: "D-mannose-6-phosphate aldose-ketose-isomerase"
       - metabolites: !!omap
           - MAM01845c: -1
           - MAM02455c: 1
@@ -58473,7 +58501,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04385"
-      - name: ""
+      - name: "D-mannose 6-phosphate 1,6-phosphomutase"
       - metabolites: !!omap
           - MAM02454c: 1
           - MAM02455c: -1
@@ -58488,7 +58516,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04386"
-      - name: ""
+      - name: "GDP:D-mannose-1-phosphate guanylyltransferase"
       - metabolites: !!omap
           - MAM01948c: -1
           - MAM01951c: 1
@@ -58506,7 +58534,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04387"
-      - name: ""
+      - name: "GTP:alpha-D-mannose-1-phosphate guanylyltransferase"
       - metabolites: !!omap
           - MAM01951c: 1
           - MAM02034c: -1
@@ -58524,7 +58552,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04399"
-      - name: ""
+      - name: "GDP-alpha-D-mannose 4,6-hydro-lyase (GDP-4-dehydro-alpha-D-rhamnose-forming)"
       - metabolites: !!omap
           - MAM01949c: 1
           - MAM01951c: -1
@@ -58540,7 +58568,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04400"
-      - name: ""
+      - name: "GDP-L-fucose:NADP+ 4-oxidoreductase (3,5-epimerizing)"
       - metabolites: !!omap
           - MAM01949c: -1
           - MAM01950c: 1
@@ -58558,7 +58586,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04403"
-      - name: ""
+      - name: "L-fucose aldose-ketose-isomerase"
       - metabolites: !!omap
           - MAM01159c: -1
           - MAM02373c: 1
@@ -58573,7 +58601,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04490"
-      - name: ""
+      - name: "ATP:D-mannose 6-phosphotransferase"
       - metabolites: !!omap
           - MAM01285c: 1
           - MAM01371c: -1
@@ -58591,7 +58619,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04706"
-      - name: ""
+      - name: "beta-D-fructose-2,6-bisphosphate 2-phosphohydrolase"
       - metabolites: !!omap
           - MAM01843c: -1
           - MAM01845c: 1
@@ -58608,7 +58636,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR08768"
-      - name: ""
+      - name: "GDP-L-fucose:NADP+ 4-oxidoreductase (3,5-epimerizing)"
       - metabolites: !!omap
           - MAM01949c: -1
           - MAM01950c: 1
@@ -58626,7 +58654,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04590"
-      - name: ""
+      - name: "Xylitol:NADP+ 4-oxidoreductase (L-xylulose-forming)"
       - metabolites: !!omap
           - MAM02039c: -1
           - MAM02425c: -1
@@ -58644,7 +58672,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04591"
-      - name: ""
+      - name: "xylitol:NAD oxidoreductase"
       - metabolites: !!omap
           - MAM02039c: 1
           - MAM02425c: 1
@@ -58662,7 +58690,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04592"
-      - name: ""
+      - name: "xylitol:NADP+ oxidoreductase"
       - metabolites: !!omap
           - MAM01758c: -1
           - MAM02039c: -1
@@ -58680,7 +58708,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04593"
-      - name: ""
+      - name: "xylitol:NAD+ 2-oxidoreductase (D-xylulose-forming)"
       - metabolites: !!omap
           - MAM01759c: 1
           - MAM02039c: 1
@@ -58698,7 +58726,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04594"
-      - name: ""
+      - name: "D-xylose:NADP+ 1-oxidoreductase"
       - metabolites: !!omap
           - MAM01757c: 1
           - MAM01758c: -1
@@ -58716,7 +58744,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04595"
-      - name: ""
+      - name: "ATP:D-xylulose 5-phosphotransferase"
       - metabolites: !!omap
           - MAM01285c: -1
           - MAM01371c: 1
@@ -58734,7 +58762,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR08341"
-      - name: ""
+      - name: "L-Arabitol:NADP+ 1-oxidoreductase"
       - metabolites: !!omap
           - MAM02039c: -1
           - MAM02337c: -1
@@ -58752,7 +58780,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR08342"
-      - name: ""
+      - name: "L-arabinitol:NAD+ 4-oxidoreductase (L-xylulose-forming)"
       - metabolites: !!omap
           - MAM02039c: -1
           - MAM02338c: 1
@@ -58770,7 +58798,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR08344"
-      - name: ""
+      - name: "L-gulonate:NADP+ 6-oxidoreductase"
       - metabolites: !!omap
           - MAM01973r: -1
           - MAM02039r: -1
@@ -58788,7 +58816,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR08352"
-      - name: ""
+      - name: "L-Gulonate:NAD+ 3-oxidoreductase"
       - metabolites: !!omap
           - MAM00768c: -1
           - MAM02039c: -1
@@ -58806,7 +58834,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR08353"
-      - name: ""
+      - name: "3-Dehydro-L-gulonate carboxy-lyase"
       - metabolites: !!omap
           - MAM00768c: -1
           - MAM01596c: 1
@@ -58823,7 +58851,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR08726"
-      - name: ""
+      - name: "ATP:D-ribulose 5-phosphotransferase"
       - metabolites: !!omap
           - MAM01285c: 1
           - MAM01371c: -1
@@ -58876,7 +58904,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR08729"
-      - name: ""
+      - name: "UDP-glucuronate glucuronohydrolase"
       - metabolites: !!omap
           - MAM01973c: 1
           - MAM02039c: 1
@@ -58894,7 +58922,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR06537"
-      - name: ""
+      - name: "L-gulonate:NADP+ 6-oxidoreductase"
       - metabolites: !!omap
           - MAM01973c: -1
           - MAM02039c: -1
@@ -58912,7 +58940,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR01568"
-      - name: ""
+      - name: "Acetaldehyde:NAD+ oxidoreductase"
       - metabolites: !!omap
           - MAM01249c: -1
           - MAM01252c: 1
@@ -58931,7 +58959,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03853"
-      - name: ""
+      - name: "(R)-S-Lactoylglutathione methylglyoxal-lyase (isomerizing)"
       - metabolites: !!omap
           - MAM00168c: 1
           - MAM02026c: -1
@@ -58947,7 +58975,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03854"
-      - name: ""
+      - name: "Lactaldehyde:NAD+ 1-oxidoreductase"
       - metabolites: !!omap
           - MAM02039c: -1
           - MAM02329c: 1
@@ -58965,7 +58993,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03855"
-      - name: ""
+      - name: "Propane-1,2-diol:NADP+ 1-oxidoreductase"
       - metabolites: !!omap
           - MAM02039c: -1
           - MAM02329c: -1
@@ -58983,7 +59011,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03857"
-      - name: ""
+      - name: "(R)-S-Lactoylglutathione hydrolase"
       - metabolites: !!omap
           - MAM00168c: -1
           - MAM01716c: 1
@@ -59001,7 +59029,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03859"
-      - name: ""
+      - name: "(R)-Lactate:ferricytochrome-c 2-oxidoreductase"
       - metabolites: !!omap
           - MAM01716c: -1
           - MAM01824m: -2
@@ -59019,7 +59047,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04087"
-      - name: ""
+      - name: "(S)-malate:NAD+ oxidoreductase (decarboxylating)"
       - metabolites: !!omap
           - MAM01596m: 1
           - MAM02439m: -1
@@ -59037,7 +59065,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04089"
-      - name: ""
+      - name: "(S)-Malate:NADP+ oxidoreductase(oxaloacetate-decarboxylating)"
       - metabolites: !!omap
           - MAM01596c: 1
           - MAM02439c: -1
@@ -59055,7 +59083,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04091"
-      - name: ""
+      - name: "(S)-Malate:NADP+ oxidoreductase(oxaloacetate-decarboxylating)"
       - metabolites: !!omap
           - MAM01596m: 1
           - MAM02439m: -1
@@ -59073,7 +59101,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04101"
-      - name: ""
+      - name: "GTP:oxaloacetate carboxy-lyase (adding GTP"
       - metabolites: !!omap
           - MAM01596c: 1
           - MAM01948c: 1
@@ -59091,7 +59119,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04103"
-      - name: ""
+      - name: "GTP:oxaloacetate carboxy-lyase (adding GTP"
       - metabolites: !!omap
           - MAM01596m: 1
           - MAM01948m: 1
@@ -59109,7 +59137,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04143"
-      - name: ""
+      - name: "Pyruvate:carbon-dioxide ligase (ADP-forming)"
       - metabolites: !!omap
           - MAM01285m: 1
           - MAM01371m: -1
@@ -59129,7 +59157,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04193"
-      - name: ""
+      - name: "CTP:pyruvate 2-O-phosphotransferase"
       - metabolites: !!omap
           - MAM01424c: -1
           - MAM01623c: 1
@@ -59241,7 +59269,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR08502"
-      - name: ""
+      - name: "(R)-Lactaldehyde:NAD+ oxidoreductase (glutathione-formylating)"
       - metabolites: !!omap
           - MAM00168c: -1
           - MAM01715c: 1
@@ -59279,7 +59307,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR08504"
-      - name: ""
+      - name: "(R)-Lactaldehyde:NAD+ 2-oxidoreductase"
       - metabolites: !!omap
           - MAM01715c: -1
           - MAM01716c: 1
@@ -59371,7 +59399,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR08511"
-      - name: ""
+      - name: "(R)-S-Lactoylglutathione hydrolase"
       - metabolites: !!omap
           - MAM00168m: -1
           - MAM01716m: 1
@@ -59389,7 +59417,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR08514"
-      - name: ""
+      - name: "(S)-Lactate:ferricytochrome-c 2-oxidoreductase"
       - metabolites: !!omap
           - MAM01824m: -2
           - MAM01826m: 2
@@ -59407,7 +59435,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR08516"
-      - name: ""
+      - name: "glycerone-phosphate phosphate-lyase (methylglyoxal-forming)"
       - metabolites: !!omap
           - MAM01690c: -1
           - MAM02475c: 1
@@ -59423,7 +59451,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR08517"
-      - name: ""
+      - name: "glycerone-phosphate phosphate-lyase (methylglyoxal-forming)"
       - metabolites: !!omap
           - MAM01939c: -1
           - MAM02475c: 1
@@ -59439,7 +59467,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04280"
-      - name: ""
+      - name: "(S)-Lactate:NAD+ oxidoreductase"
       - metabolites: !!omap
           - MAM02039m: -1
           - MAM02403m: 1
@@ -59457,7 +59485,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR00153"
-      - name: ""
+      - name: "Propanoate:CoA ligase (AMP-forming)"
       - metabolites: !!omap
           - MAM01334c: 1
           - MAM01371c: -1
@@ -59493,7 +59521,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03797"
-      - name: ""
+      - name: "Propanoate:CoA ligase (AMP-forming)"
       - metabolites: !!omap
           - MAM01334m: -1
           - MAM01371m: 1
@@ -59531,7 +59559,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04282"
-      - name: ""
+      - name: "3-Oxopropanoate:NAD+ oxidoreductase (decarboxylating, CoA-acetylating)"
       - metabolites: !!omap
           - MAM00900m: -1
           - MAM01261m: 1
@@ -59550,7 +59578,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04331"
-      - name: ""
+      - name: "Propionyladenylate:CoA propionyltransferase"
       - metabolites: !!omap
           - MAM01334c: -1
           - MAM01597c: 1
@@ -59568,7 +59596,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04459"
-      - name: ""
+      - name: "ATP:propanoate adenylyltransferase"
       - metabolites: !!omap
           - MAM01371c: -1
           - MAM02039c: -1
@@ -59586,7 +59614,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04460"
-      - name: ""
+      - name: "ATP:propanoate adenylyltransferase"
       - metabolites: !!omap
           - MAM01371m: -1
           - MAM02039m: -1
@@ -59604,7 +59632,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04464"
-      - name: ""
+      - name: "Acetoacetate carboxy-lyase (acetone-forming)"
       - metabolites: !!omap
           - MAM01253m: -1
           - MAM01256m: 1
@@ -59639,7 +59667,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR08078"
-      - name: ""
+      - name: "propanoyl-CoA:oxaloacetate C-propanoyltransferase (thioester-hydrolysing, 1-carboxyethyl-forming)"
       - metabolites: !!omap
           - MAM00665c: 1
           - MAM01597c: 1
@@ -59658,7 +59686,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR09803"
-      - name: ""
+      - name: "3-oxopropionyl-CoA:NAD+ oxidoreductase"
       - metabolites: !!omap
           - MAM02039m: -2
           - MAM02040m: 1
@@ -59677,7 +59705,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR09804"
-      - name: ""
+      - name: "3-hydroxypropionyl-CoA:NADP+ oxidoreductase"
       - metabolites: !!omap
           - MAM00799m: -1
           - MAM02039m: 1
@@ -59695,7 +59723,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR00718"
-      - name: ""
+      - name: "2-Hydroxyglutarate:(acceptor) 2-oxidoreductase"
       - metabolites: !!omap
           - MAM00653c: 1
           - MAM01306c: -1
@@ -59730,7 +59758,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR01434"
-      - name: ""
+      - name: "acetyl-CoA:acetyl-CoA C-acetyltransferase"
       - metabolites: !!omap
           - MAM01255c: -1
           - MAM01261c: 2
@@ -59746,7 +59774,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03163"
-      - name: ""
+      - name: "butanoyl-CoA:electron-transfer flavoprotein 2,3-oxidoreductase"
       - metabolites: !!omap
           - MAM01412m: -1
           - MAM01622m: 1
@@ -59763,7 +59791,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04461"
-      - name: ""
+      - name: "(R)-3-Hydroxybutanoate:NAD+ oxidoreductase"
       - metabolites: !!omap
           - MAM00157m: -1
           - MAM01253m: 1
@@ -59781,7 +59809,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04604"
-      - name: ""
+      - name: "acetyl-CoA:acetoacetyl-CoA C-acetyltransferase (thioester-hydrolysing, carboxymethyl-forming)"
       - metabolites: !!omap
           - MAM01255x: -1
           - MAM01261x: -1
@@ -59800,7 +59828,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR05351"
-      - name: ""
+      - name: "2-hydroxybutyrate:NAD+ oxidoreductase"
       - metabolites: !!omap
           - MAM00648c: -1
           - MAM00671c: 1
@@ -59818,7 +59846,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR07709"
-      - name: ""
+      - name: "(3R)-3-hydroxybutanoyl-CoA hydro-lyase"
       - metabolites: !!omap
           - MAM00159m: -1
           - MAM01622m: 1
@@ -59834,7 +59862,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04052"
-      - name: ""
+      - name: "ATP:D-ribose-5-phosphate diphosphotransferase"
       - metabolites: !!omap
           - MAM01334c: 1
           - MAM01371c: -1
@@ -59852,7 +59880,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04304"
-      - name: ""
+      - name: "D-glucose-6-phosphate:NADP+ 1-oxidoreductase"
       - metabolites: !!omap
           - MAM01961r: 1
           - MAM01968r: -1
@@ -59868,27 +59896,9 @@
       - subsystem:
           - "Pentose phosphate pathway"
       - confidence_score: 0
-    - !!omap
-      - id: "MAR04306"
-      - name: ""
-      - metabolites: !!omap
-          - MAM01961c: -1
-          - MAM01968c: 1
-          - MAM02039c: -1
-          - MAM02554c: 1
-          - MAM02555c: -1
-      - lower_bound: -1000
-      - upper_bound: 1000
-      - gene_reaction_rule: "Zw"
-      - rxnNotes: ""
-      - eccodes: "1.1.1.49"
-      - references: "PMID:15774558;PMID:16756494;PMID:2753047;PMID:4169027"
-      - subsystem:
-          - "Pentose phosphate pathway"
-      - confidence_score: 0
     - !!omap
       - id: "MAR04350"
-      - name: ""
+      - name: "ATP:D-ribose 5-phosphotransferase"
       - metabolites: !!omap
           - MAM01285c: -1
           - MAM01371c: 1
@@ -59906,7 +59916,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04351"
-      - name: ""
+      - name: "D-ribose-5-phosphate aldose-ketose-isomerase"
       - metabolites: !!omap
           - MAM02845r: -1
           - MAM02846r: 1
@@ -59921,7 +59931,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04352"
-      - name: ""
+      - name: "D-ribose-5-phosphate aldose-ketose-isomerase"
       - metabolites: !!omap
           - MAM02845c: -1
           - MAM02846c: 1
@@ -59936,7 +59946,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04354"
-      - name: ""
+      - name: "D-Ribose 1,5-phosphomutase"
       - metabolites: !!omap
           - MAM02844c: -1
           - MAM02845c: 1
@@ -59951,7 +59961,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04398"
-      - name: ""
+      - name: "2-deoxy-D-ribose-5-phosphate acetaldehyde-lyase (D-glyceraldehyde-3-phosphate-forming)"
       - metabolites: !!omap
           - MAM00640c: -1
           - MAM01249c: 1
@@ -59967,7 +59977,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04404"
-      - name: ""
+      - name: "D-Fructose 6-phosphate:D-glyceraldehyde-3-phosphate glycolaldehyde transferase"
       - metabolites: !!omap
           - MAM01761c: -1
           - MAM01785c: -1
@@ -59984,7 +59994,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04473"
-      - name: ""
+      - name: "6-phospho-D-gluconate:NADP+ 2-oxidoreductase (decarboxylating)"
       - metabolites: !!omap
           - MAM01169r: -1
           - MAM01596r: 1
@@ -60002,7 +60012,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04474"
-      - name: ""
+      - name: "Phosphogluconate dehydrogenase"
       - metabolites: !!omap
           - MAM01169c: -1
           - MAM01596c: 1
@@ -60012,15 +60022,15 @@
       - lower_bound: 0
       - upper_bound: 1000
       - gene_reaction_rule: "Pgd"
-      - rxnNotes: ""
+      - rxnNotes: "Harpers illustrated Biochemistry (2009) 28th edition pages 174-183, ISBN:9781282335806"
       - eccodes: "1.1.1.44"
-      - references: "PMID:12398160;PMID:1504088;PMID:15558954;PMID:16756494;PMID:2753047;PMID:3943305;PMID:6212636;PMID:7194116;PMID:7225115;PMID:7623792"
+      - references: "PMID:12398160;PMID:1504088;PMID:15558954;PMID:16756494;PMID:2753047;PMID:3943305;PMID:6212636;PMID:7194116;PMID:7225115;PMID:7623792;PMID:4382012;PMID:13575411"
       - subsystem:
           - "Pentose phosphate pathway"
       - confidence_score: 0
     - !!omap
       - id: "MAR04476"
-      - name: ""
+      - name: "ATP:D-gluconate 6-phosphotransferase"
       - metabolites: !!omap
           - MAM01169c: -1
           - MAM01285c: -1
@@ -60038,7 +60048,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04477"
-      - name: ""
+      - name: "D-Ribulose-5-phosphate 3-epimerase"
       - metabolites: !!omap
           - MAM01761c: -1
           - MAM02846c: 1
@@ -60053,7 +60063,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04501"
-      - name: ""
+      - name: "sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glycolaldehyde transferase"
       - metabolites: !!omap
           - MAM01761c: -1
           - MAM01939c: 1
@@ -60070,7 +60080,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04565"
-      - name: ""
+      - name: "sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase"
       - metabolites: !!omap
           - MAM01785c: 1
           - MAM01845c: 1
@@ -60087,7 +60097,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04567"
-      - name: ""
+      - name: "ATP:Sedoheptulose 7-phosphate 1-phosphotransferase"
       - metabolites: !!omap
           - MAM01285c: -1
           - MAM01371c: 1
@@ -60123,7 +60133,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR09800"
-      - name: ""
+      - name: "ATP:sedoheptulose 1-phosphotransferase"
       - metabolites: !!omap
           - MAM01285c: 1
           - MAM01371c: -1
@@ -60141,7 +60151,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04623"
-      - name: ""
+      - name: "6-Phospho-D-glucono-1,5-lactone lactonohydrolase"
       - metabolites: !!omap
           - MAM01169r: 1
           - MAM01961r: -1
@@ -60158,7 +60168,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04625"
-      - name: ""
+      - name: "6-Phospho-D-glucono-1,5-lactone lactonohydrolase"
       - metabolites: !!omap
           - MAM01169c: 1
           - MAM01961c: -1
@@ -60175,7 +60185,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04710"
-      - name: ""
+      - name: "2-deoxy-D-ribose 1-phosphate 1,5-phosphomutase"
       - metabolites: !!omap
           - MAM00639c: -1
           - MAM00640c: 1
@@ -60208,7 +60218,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR08074"
-      - name: ""
+      - name: "ATP:2-deoxy-D-ribose 5-phosphotransferase"
       - metabolites: !!omap
           - MAM00640c: 1
           - MAM01285c: 1
@@ -60226,7 +60236,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR08653"
-      - name: ""
+      - name: "D-glucose-6-phosphate:NAD+ 1-oxidoreductase"
       - metabolites: !!omap
           - MAM01961r: -1
           - MAM01968r: 1
@@ -60244,7 +60254,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03998"
-      - name: ""
+      - name: "ADP phosphohydrolase"
       - metabolites: !!omap
           - MAM01285c: -1
           - MAM01334c: 1
@@ -60262,7 +60272,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04000"
-      - name: ""
+      - name: "ATP diphosphate-lyase (cyclizing"
       - metabolites: !!omap
           - MAM01371c: -1
           - MAM01419c: 1
@@ -60278,7 +60288,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04002"
-      - name: ""
+      - name: "ATP:AMP phosphotransferase"
       - metabolites: !!omap
           - MAM01285c: -2
           - MAM01334c: 1
@@ -60294,7 +60304,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04004"
-      - name: ""
+      - name: "ATP:AMP phosphotransferase"
       - metabolites: !!omap
           - MAM01285m: -2
           - MAM01334m: 1
@@ -60310,7 +60320,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04010"
-      - name: ""
+      - name: "adenosine 5'-monophosphate phosphohydrolase"
       - metabolites: !!omap
           - MAM01280c: 1
           - MAM01334c: -1
@@ -60327,7 +60337,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04081"
-      - name: ""
+      - name: "adenosine 5'-monophosphate phosphohydrolase"
       - metabolites: !!omap
           - MAM01280e: 1
           - MAM01334e: -1
@@ -60344,7 +60354,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04082"
-      - name: ""
+      - name: "adenosine 5'-monophosphate phosphohydrolase"
       - metabolites: !!omap
           - MAM01280m: 1
           - MAM01334m: -1
@@ -60361,7 +60371,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04012"
-      - name: ""
+      - name: "ATP:adenosine 5'-phosphotransferase"
       - metabolites: !!omap
           - MAM01280c: -1
           - MAM01285c: 1
@@ -60379,7 +60389,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04014"
-      - name: ""
+      - name: "adenosine 3',5'-phosphate 5'-nucleotidohydrolase"
       - metabolites: !!omap
           - MAM01334c: 1
           - MAM01419c: -1
@@ -60396,7 +60406,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04020"
-      - name: ""
+      - name: "ATP:GMP phosphotransferase"
       - metabolites: !!omap
           - MAM01285c: -1
           - MAM01371c: 1
@@ -60413,7 +60423,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04022"
-      - name: ""
+      - name: "GTP diphosphate-lyase (cyclizing"
       - metabolites: !!omap
           - MAM01433c: 1
           - MAM02034c: -1
@@ -60429,7 +60439,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04038"
-      - name: ""
+      - name: "IMP 1,2-hydrolase (decyclizing)"
       - metabolites: !!omap
           - MAM01804c: -1
           - MAM02040c: 1
@@ -60445,7 +60455,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04040"
-      - name: ""
+      - name: "IMP:NAD+ oxidoreductase"
       - metabolites: !!omap
           - MAM02039c: 1
           - MAM02040c: -1
@@ -60464,7 +60474,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04042"
-      - name: ""
+      - name: "IMP:L-aspartate ligase (GDP-forming)"
       - metabolites: !!omap
           - MAM01282c: 1
           - MAM01370c: -1
@@ -60484,7 +60494,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04046"
-      - name: ""
+      - name: "Xanthosine-5'-phosphate:L-glutamine amido-ligase (AMP-forming)"
       - metabolites: !!omap
           - MAM01334c: 1
           - MAM01371c: -1
@@ -60506,7 +60516,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04048"
-      - name: ""
+      - name: "Guanosine 3',5'-cyclic phosphate 5'-nucleotidohydrolase"
       - metabolites: !!omap
           - MAM01433c: -1
           - MAM02016c: 1
@@ -60523,7 +60533,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04080"
-      - name: ""
+      - name: "AMP aminohydrolase"
       - metabolites: !!omap
           - MAM01334c: -1
           - MAM02040c: -1
@@ -60540,7 +60550,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04085"
-      - name: ""
+      - name: "AMP:diphosphate phospho-D-ribosyltransferase"
       - metabolites: !!omap
           - MAM01279c: 1
           - MAM01334c: -1
@@ -60557,7 +60567,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04086"
-      - name: ""
+      - name: "AMP:diphosphate phospho-D-ribosyltransferase"
       - metabolites: !!omap
           - MAM01279e: 1
           - MAM01334e: -1
@@ -60574,7 +60584,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04134"
-      - name: ""
+      - name: "GDP phosphohydrolase"
       - metabolites: !!omap
           - MAM01948e: -1
           - MAM02016e: 1
@@ -60592,7 +60602,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04135"
-      - name: ""
+      - name: "ATP:GMP phosphotransferase"
       - metabolites: !!omap
           - MAM01285m: -1
           - MAM01371m: 1
@@ -60609,7 +60619,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04168"
-      - name: ""
+      - name: "GTP diphosphohydrolase (diphosphate-forming)"
       - metabolites: !!omap
           - MAM02016c: 1
           - MAM02034c: -1
@@ -60627,7 +60637,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04171"
-      - name: ""
+      - name: "GTP:pyruvate 2-O-phosphotransferase"
       - metabolites: !!omap
           - MAM01948c: -1
           - MAM02034c: 1
@@ -60645,7 +60655,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04406"
-      - name: ""
+      - name: "5-phosphoribosylamine:diphosphate phospho-alpha-D-ribosyltransferase (glutamate-amidating)"
       - metabolites: !!omap
           - MAM01131c: 1
           - MAM01974c: 1
@@ -60664,7 +60674,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04412"
-      - name: ""
+      - name: "N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming)"
       - metabolites: !!omap
           - MAM01282c: 1
           - MAM01334c: -1
@@ -60680,7 +60690,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04417"
-      - name: ""
+      - name: "inosine 5'-monophosphate phosphohydrolase"
       - metabolites: !!omap
           - MAM02040c: -1
           - MAM02167c: -1
@@ -60697,7 +60707,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04421"
-      - name: ""
+      - name: "dATP:pyruvate 2-O-phosphotransferase"
       - metabolites: !!omap
           - MAM01637c: -1
           - MAM01642c: 1
@@ -60715,7 +60725,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04449"
-      - name: ""
+      - name: "guanosine 5'-monophosphate phosphohydrolase"
       - metabolites: !!omap
           - MAM02016c: -1
           - MAM02038c: 1
@@ -60732,7 +60742,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04450"
-      - name: ""
+      - name: "guanosine 5'-monophosphate phosphohydrolase"
       - metabolites: !!omap
           - MAM02016e: -1
           - MAM02038e: 1
@@ -60749,7 +60759,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04451"
-      - name: ""
+      - name: "ATP:guanosine 5'-phosphotransferase"
       - metabolites: !!omap
           - MAM01285m: -1
           - MAM01371m: 1
@@ -60767,7 +60777,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04453"
-      - name: ""
+      - name: "Xanthosine-5'-phosphate:ammonia ligase (AMP-forming)"
       - metabolites: !!omap
           - MAM01334c: 1
           - MAM01371c: -1
@@ -60787,7 +60797,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04480"
-      - name: ""
+      - name: "ATP:dAMP phosphotransferase"
       - metabolites: !!omap
           - MAM01285c: -1
           - MAM01371c: 1
@@ -60804,7 +60814,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04481"
-      - name: ""
+      - name: "Adenosine aminohydrolase"
       - metabolites: !!omap
           - MAM01280c: -1
           - MAM02040c: -1
@@ -60821,7 +60831,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04482"
-      - name: ""
+      - name: "Adenosine aminohydrolase"
       - metabolites: !!omap
           - MAM01280e: -1
           - MAM02040e: -1
@@ -60838,7 +60848,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04486"
-      - name: ""
+      - name: "ITP:D-glucose 6-phosphotransferase"
       - metabolites: !!omap
           - MAM01965c: -1
           - MAM01968c: 1
@@ -60856,7 +60866,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04487"
-      - name: ""
+      - name: "dATP:D-glucose 6-phosphotransferase"
       - metabolites: !!omap
           - MAM01637c: 1
           - MAM01642c: -1
@@ -60874,7 +60884,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04488"
-      - name: ""
+      - name: "ITP:D-fructose 6-phosphotransferase"
       - metabolites: !!omap
           - MAM01840c: -1
           - MAM01845c: 1
@@ -60892,7 +60902,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04489"
-      - name: ""
+      - name: "dATP:D-fructose 6-phosphotransferase"
       - metabolites: !!omap
           - MAM01637c: 1
           - MAM01642c: -1
@@ -60910,7 +60920,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04492"
-      - name: ""
+      - name: "ITP:D-mannose 6-phosphotransferase"
       - metabolites: !!omap
           - MAM02039c: 1
           - MAM02161c: 1
@@ -60928,7 +60938,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04493"
-      - name: ""
+      - name: "dATP:D-mannose 6-phosphotransferase"
       - metabolites: !!omap
           - MAM01637c: 1
           - MAM01642c: -1
@@ -60946,7 +60956,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04495"
-      - name: ""
+      - name: "ITP:D-glucosamine 6-phosphotransferase"
       - metabolites: !!omap
           - MAM01962c: -1
           - MAM01963c: 1
@@ -60964,7 +60974,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04496"
-      - name: ""
+      - name: "dATP:D-glucosamine 6-phosphotransferase"
       - metabolites: !!omap
           - MAM01637c: 1
           - MAM01642c: -1
@@ -60982,7 +60992,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04518"
-      - name: ""
+      - name: "Guanine aminohydrolase"
       - metabolites: !!omap
           - MAM02037c: -1
           - MAM02040c: -1
@@ -60999,7 +61009,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04519"
-      - name: ""
+      - name: "hypoxanthine:NAD+ oxidoreductase"
       - metabolites: !!omap
           - MAM02039c: 1
           - MAM02040c: -1
@@ -61018,7 +61028,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04520"
-      - name: ""
+      - name: "Hypoxanthine:oxygen oxidoreductase"
       - metabolites: !!omap
           - MAM02040c: -1
           - MAM02041c: 1
@@ -61036,7 +61046,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04573"
-      - name: ""
+      - name: "dGTP:pyruvate 2-O-phosphotransferase"
       - metabolites: !!omap
           - MAM01680c: -1
           - MAM01688c: 1
@@ -61054,7 +61064,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04574"
-      - name: ""
+      - name: "inosine:phosphate alpha-D-ribosyltransferase"
       - metabolites: !!omap
           - MAM02159c: 1
           - MAM02170c: -1
@@ -61071,7 +61081,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04602"
-      - name: ""
+      - name: "2'-deoxyguanosine 5'-monophosphate phosphohydrolase"
       - metabolites: !!omap
           - MAM01669c: 1
           - MAM01686c: -1
@@ -61088,7 +61098,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04603"
-      - name: ""
+      - name: "Deoxyguanosine:orthophosphate ribosyltransferase"
       - metabolites: !!omap
           - MAM00639c: -1
           - MAM01669c: 1
@@ -61105,7 +61115,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04611"
-      - name: ""
+      - name: "2'-deoxyadenosine 5'-triphosphate:oxydized-thioredoxin 2'-oxidoreductase"
       - metabolites: !!omap
           - MAM01371c: -1
           - MAM01642c: 1
@@ -61123,7 +61133,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04612"
-      - name: ""
+      - name: "2'-deoxyadenosine 5'-diphosphate:oxidized-thioredoxin 2'-oxidoreductase"
       - metabolites: !!omap
           - MAM01285c: -1
           - MAM01637c: 1
@@ -61141,7 +61151,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04614"
-      - name: ""
+      - name: "2'-deoxyguanosine 5'-triphosphate:oxydized-thioredoxin 2'-oxidoreductase"
       - metabolites: !!omap
           - MAM01688c: 1
           - MAM02034c: -1
@@ -61159,7 +61169,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04615"
-      - name: ""
+      - name: "2'-deoxyguanosine 5'-diphosphate:oxidized-thioredoxin 2'-oxidoreductase"
       - metabolites: !!omap
           - MAM01680c: 1
           - MAM01948c: -1
@@ -61177,7 +61187,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04617"
-      - name: ""
+      - name: "2'-deoxyuridine 5'-triphosphate:oxydized-thioredoxin 2'-oxidoreductase"
       - metabolites: !!omap
           - MAM01623c: -1
           - MAM01645c: 1
@@ -61195,7 +61205,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04618"
-      - name: ""
+      - name: "2'-deoxyuridine 5'-triphosphate:oxydized-thioredoxin 2'-oxidoreductase"
       - metabolites: !!omap
           - MAM01756c: 1
           - MAM02040c: 1
@@ -61213,7 +61223,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04619"
-      - name: ""
+      - name: "2'-deoxycytidine diphosphate:oxidized-thioredoxin 2'-oxidoreductase"
       - metabolites: !!omap
           - MAM01424c: -1
           - MAM01643c: 1
@@ -61231,7 +61241,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04621"
-      - name: ""
+      - name: "2'-deoxyuridine 5'-diphosphate:oxidized-thioredoxin 2'-oxidoreductase"
       - metabolites: !!omap
           - MAM01754c: 1
           - MAM02040c: 1
@@ -61249,7 +61259,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04632"
-      - name: ""
+      - name: "2'-deoxyadenosine 5'-monophosphate phosphohydrolase"
       - metabolites: !!omap
           - MAM01639c: -1
           - MAM01666c: 1
@@ -61266,7 +61276,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04646"
-      - name: ""
+      - name: "xanthine:NAD+ oxidoreductase"
       - metabolites: !!omap
           - MAM02039c: 1
           - MAM02040c: -1
@@ -61285,7 +61295,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04648"
-      - name: ""
+      - name: "xanthine:NAD+ oxidoreductase"
       - metabolites: !!omap
           - MAM02039x: 1
           - MAM02040x: -1
@@ -61304,7 +61314,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04649"
-      - name: ""
+      - name: "Xanthine:oxygen oxidoreductase"
       - metabolites: !!omap
           - MAM02040c: -1
           - MAM02041c: 1
@@ -61322,7 +61332,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04650"
-      - name: ""
+      - name: "Xanthine:oxygen oxidoreductase"
       - metabolites: !!omap
           - MAM02040x: -1
           - MAM02041x: 1
@@ -61340,7 +61350,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04651"
-      - name: ""
+      - name: "guanosine:phosphate alpha-D-ribosyltransferase"
       - metabolites: !!omap
           - MAM02037c: 1
           - MAM02038c: -1
@@ -61357,7 +61367,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04663"
-      - name: ""
+      - name: "xanthosine:orthophosphate ribosyltransferase"
       - metabolites: !!omap
           - MAM02751c: -1
           - MAM02844c: 1
@@ -61374,7 +61384,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04694"
-      - name: ""
+      - name: "deoxyadenosine aminohydrolase"
       - metabolites: !!omap
           - MAM01666c: -1
           - MAM01671c: 1
@@ -61391,7 +61401,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04695"
-      - name: ""
+      - name: "Deoxyadenosine:orthophosphate ribosyltransferase"
       - metabolites: !!omap
           - MAM00639c: -1
           - MAM01279c: -1
@@ -61408,7 +61418,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04705"
-      - name: ""
+      - name: "xanthosine 5'-phosphate phosphohydrolase"
       - metabolites: !!omap
           - MAM02040c: -1
           - MAM02751c: 1
@@ -61425,7 +61435,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04709"
-      - name: ""
+      - name: "Deoxyinosine:orthophosphate ribosyltransferase"
       - metabolites: !!omap
           - MAM00639c: -1
           - MAM01671c: 1
@@ -61442,7 +61452,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04799"
-      - name: ""
+      - name: "5-Phospho-D-ribosylamine:glycine ligase (ADP-forming)"
       - metabolites: !!omap
           - MAM01131c: -1
           - MAM01285c: 1
@@ -61462,7 +61472,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04802"
-      - name: ""
+      - name: "2-(Formamido)-N1-(5-phosphoribosyl)acetamidine cyclo-ligase (ADP-forming)"
       - metabolites: !!omap
           - MAM01132c: -1
           - MAM01285c: 1
@@ -61481,7 +61491,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04804"
-      - name: ""
+      - name: "1-(5-phospho-D-ribosyl)-5-amino-4-imidazolecarboxylate carboxy-lyase"
       - metabolites: !!omap
           - MAM01130c: -1
           - MAM01305c: 1
@@ -61498,7 +61508,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04808"
-      - name: ""
+      - name: "5'-Phosphoribosylformylglycinamide:L-glutamine amido-ligase (ADP-forming)"
       - metabolites: !!omap
           - MAM01132c: 1
           - MAM01285c: 1
@@ -61520,7 +61530,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04810"
-      - name: ""
+      - name: "1-(5-Phosphoribosyl)-5-amino-4-carboxyimidazole:L-aspartate ligase (ADP-forming)"
       - metabolites: !!omap
           - MAM01130c: -1
           - MAM01285c: 1
@@ -61540,7 +61550,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04812"
-      - name: ""
+      - name: "1-(5'-Phosphoribosyl)-5-amino-4-(N-succinocarboxamide)-imidazole AMP-lyase"
       - metabolites: !!omap
           - MAM01304c: -1
           - MAM01862c: -1
@@ -61556,7 +61566,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04814"
-      - name: ""
+      - name: "10-Formyltetrahydrofolate:5'-phosphoribosyl-5-amino-4-imidazolecarboxamide formyltransferase"
       - metabolites: !!omap
           - MAM00266c: -1
           - MAM01304c: -1
@@ -61573,7 +61583,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR05301"
-      - name: ""
+      - name: "GTP:uridine 5'-phosphotransferase"
       - metabolites: !!omap
           - MAM01948c: 1
           - MAM02034c: -1
@@ -61591,7 +61601,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR05353"
-      - name: ""
+      - name: "ATP:dGMP phosphotransferase"
       - metabolites: !!omap
           - MAM01285c: -1
           - MAM01371c: 1
@@ -61695,7 +61705,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR06609"
-      - name: ""
+      - name: "(S)-allantoin amidohydrolase"
       - metabolites: !!omap
           - MAM01312c: 1
           - MAM01313c: -1
@@ -61729,7 +61739,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR06611"
-      - name: ""
+      - name: "urate:oxygen oxidoreductase"
       - metabolites: !!omap
           - MAM01104c: 1
           - MAM02040c: -1
@@ -61747,7 +61757,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR07144"
-      - name: ""
+      - name: "ADP-ribose ribophosphohydrolase"
       - metabolites: !!omap
           - MAM01288c: -1
           - MAM01334c: 1
@@ -61765,7 +61775,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR08755"
-      - name: ""
+      - name: "Hypoxanthine:oxygen oxidoreductase"
       - metabolites: !!omap
           - MAM02040x: -1
           - MAM02041x: 1
@@ -61783,7 +61793,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR09797"
-      - name: ""
+      - name: "Adenine aminohydrolase"
       - metabolites: !!omap
           - MAM01279c: -1
           - MAM02040c: -1
@@ -61800,7 +61810,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04016"
-      - name: ""
+      - name: "ATP:GDP phosphotransferase"
       - metabolites: !!omap
           - MAM01285c: -1
           - MAM01371c: 1
@@ -61817,7 +61827,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04018"
-      - name: ""
+      - name: "ATP:GDP phosphotransferase"
       - metabolites: !!omap
           - MAM01285m: -1
           - MAM01371m: 1
@@ -61834,7 +61844,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04044"
-      - name: ""
+      - name: "ATP:dADP phosphotransferase"
       - metabolites: !!omap
           - MAM01285c: -1
           - MAM01371c: 1
@@ -61851,7 +61861,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04291"
-      - name: ""
+      - name: "ATP:IDP phosphotransferase"
       - metabolites: !!omap
           - MAM01285c: -1
           - MAM01371c: 1
@@ -61868,7 +61878,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04420"
-      - name: ""
+      - name: "ATP:dADP phosphotransferase"
       - metabolites: !!omap
           - MAM01285m: -1
           - MAM01371m: 1
@@ -61885,7 +61895,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04570"
-      - name: ""
+      - name: "ATP:dGDP phosphotransferase"
       - metabolites: !!omap
           - MAM01285c: -1
           - MAM01371c: 1
@@ -61902,7 +61912,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04572"
-      - name: ""
+      - name: "ATP:dGDP phosphotransferase"
       - metabolites: !!omap
           - MAM01285m: -1
           - MAM01371m: 1
@@ -61919,7 +61929,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04006"
-      - name: ""
+      - name: "ATP:UDP phosphotransferase"
       - metabolites: !!omap
           - MAM01285c: -1
           - MAM01371c: 1
@@ -61936,7 +61946,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04028"
-      - name: ""
+      - name: "ATP:CDP phosphotransferase"
       - metabolites: !!omap
           - MAM01285c: -1
           - MAM01371c: 1
@@ -61953,7 +61963,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04030"
-      - name: ""
+      - name: "ATP:CDP phosphotransferase"
       - metabolites: !!omap
           - MAM01285m: -1
           - MAM01371m: 1
@@ -61970,7 +61980,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04670"
-      - name: ""
+      - name: "ATP:dCDP phosphotransferase"
       - metabolites: !!omap
           - MAM01285c: -1
           - MAM01371c: 1
@@ -61987,7 +61997,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04673"
-      - name: ""
+      - name: "ATP:dUDP phosphotransferase"
       - metabolites: !!omap
           - MAM01285c: -1
           - MAM01371c: 1
@@ -62004,7 +62014,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04675"
-      - name: ""
+      - name: "ATP:dUDP phosphotransferase"
       - metabolites: !!omap
           - MAM01285m: 1
           - MAM01371m: -1
@@ -62072,7 +62082,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04635"
-      - name: ""
+      - name: "ATP:dTDP phosphotransferase"
       - metabolites: !!omap
           - MAM01285c: -1
           - MAM01371c: 1
@@ -62089,7 +62099,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03793"
-      - name: ""
+      - name: "(R)-3-Amino-2-methylpropanoate:pyruvate aminotransferase"
       - metabolites: !!omap
           - MAM00661m: -1
           - MAM01307m: -1
@@ -62106,7 +62116,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03931"
-      - name: ""
+      - name: "NADPH:oxidized-thioredoxin oxidoreductase"
       - metabolites: !!omap
           - MAM02039c: -1
           - MAM02554c: 1
@@ -62142,7 +62152,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03970"
-      - name: ""
+      - name: "uridine 5'-monophosphate phosphohydrolase"
       - metabolites: !!omap
           - MAM02040c: -1
           - MAM02751c: 1
@@ -62159,7 +62169,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04008"
-      - name: ""
+      - name: "ATP:UMP phosphotransferase"
       - metabolites: !!omap
           - MAM01285c: -1
           - MAM01371c: 1
@@ -62176,7 +62186,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04032"
-      - name: ""
+      - name: "UTP:ammonia ligase (ADP-forming)"
       - metabolites: !!omap
           - MAM01285c: 1
           - MAM01371c: -1
@@ -62196,7 +62206,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04034"
-      - name: ""
+      - name: "HCO3-:L-glutamine amido-ligase (ADP-forming, carbamate-phosphorylating)"
       - metabolites: !!omap
           - MAM01285c: 2
           - MAM01371c: -2
@@ -62218,7 +62228,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04036"
-      - name: ""
+      - name: "orotidine-5'-phosphate carboxy-lyase (UMP-forming)"
       - metabolites: !!omap
           - MAM01596c: 1
           - MAM02039c: -1
@@ -62235,7 +62245,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04050"
-      - name: ""
+      - name: "carbamoyl-phosphate:L-aspartate carbamoyltransferase"
       - metabolites: !!omap
           - MAM01370c: 1
           - MAM01420c: 1
@@ -62253,7 +62263,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04056"
-      - name: ""
+      - name: "thymidylate 5'-phosphohydrolase"
       - metabolites: !!omap
           - MAM01752c: -1
           - MAM02040c: -1
@@ -62270,7 +62280,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04059"
-      - name: ""
+      - name: "UDP phosphohydrolase"
       - metabolites: !!omap
           - MAM02039r: 1
           - MAM02040r: -1
@@ -62288,7 +62298,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04060"
-      - name: ""
+      - name: "UDP phosphohydrolase"
       - metabolites: !!omap
           - MAM02039e: 1
           - MAM02040e: -1
@@ -62306,7 +62316,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04127"
-      - name: ""
+      - name: "UDP-glucose glucophosphohydrolase"
       - metabolites: !!omap
           - MAM01967c: 1
           - MAM02039c: 2
@@ -62324,7 +62334,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04177"
-      - name: ""
+      - name: "cytidine-5'-monophosphate phosphohydrolase"
       - metabolites: !!omap
           - MAM01590c: -1
           - MAM01630c: 1
@@ -62341,7 +62351,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04179"
-      - name: ""
+      - name: "cytidine-5'-monophosphate phosphohydrolase"
       - metabolites: !!omap
           - MAM01590e: -1
           - MAM01630e: 1
@@ -62358,7 +62368,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04182"
-      - name: ""
+      - name: "GTP:cytidine 5'-phosphotransferase"
       - metabolites: !!omap
           - MAM01590c: 1
           - MAM01630c: -1
@@ -62376,7 +62386,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04194"
-      - name: ""
+      - name: "UTP:L-glutamine amido-ligase (ADP-forming)"
       - metabolites: !!omap
           - MAM01285c: 1
           - MAM01371c: -1
@@ -62398,7 +62408,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04210"
-      - name: ""
+      - name: "UTP:pyruvate 2-O-phosphotransferase"
       - metabolites: !!omap
           - MAM02039c: -1
           - MAM02696c: -1
@@ -62416,7 +62426,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04211"
-      - name: ""
+      - name: "uridine triphosphate pyrophosphohydrolase"
       - metabolites: !!omap
           - MAM02039e: 1
           - MAM02040e: -1
@@ -62434,7 +62444,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04343"
-      - name: ""
+      - name: "UMP:diphosphate phospho-alpha-D-ribosyltransferase"
       - metabolites: !!omap
           - MAM02759c: 1
           - MAM02806c: -1
@@ -62451,7 +62461,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04345"
-      - name: ""
+      - name: "5,6-Dihydrouracil:NADP+ oxidoreductase"
       - metabolites: !!omap
           - MAM01052c: -1
           - MAM02039c: 1
@@ -62469,7 +62479,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04346"
-      - name: ""
+      - name: "5,6-Dihydrouracil amidohydrolase"
       - metabolites: !!omap
           - MAM00923c: 1
           - MAM01052c: -1
@@ -62486,7 +62496,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04470"
-      - name: ""
+      - name: "5,6-dihydrothymine:NAD+ oxidoreductase"
       - metabolites: !!omap
           - MAM01705c: 1
           - MAM02039c: -1
@@ -62504,7 +62514,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04471"
-      - name: ""
+      - name: "5,6-dihydrothymine:NAD+ oxidoreductase"
       - metabolites: !!omap
           - MAM01705m: 1
           - MAM02039m: -1
@@ -62522,7 +62532,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04472"
-      - name: ""
+      - name: "5,6-Dihydrothymine:NADP+ oxidoreductase"
       - metabolites: !!omap
           - MAM01705c: 1
           - MAM02039c: -1
@@ -62540,7 +62550,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04484"
-      - name: ""
+      - name: "thymidylate 5'-phosphohydrolase"
       - metabolites: !!omap
           - MAM01752m: -1
           - MAM02040m: -1
@@ -62557,7 +62567,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04485"
-      - name: ""
+      - name: "thymidine:phosphate deoxy-alpha-D-ribosyltransferase"
       - metabolites: !!omap
           - MAM00639c: -1
           - MAM02751c: 1
@@ -62574,7 +62584,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04510"
-      - name: ""
+      - name: "2'-deoxycytidine 5'-monophosphate phosphohydrolase"
       - metabolites: !!omap
           - MAM01644c: -1
           - MAM01668c: 1
@@ -62591,7 +62601,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04512"
-      - name: ""
+      - name: "ATP:dCMP phosphotransferase"
       - metabolites: !!omap
           - MAM01285c: -1
           - MAM01371c: 1
@@ -62608,7 +62618,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04514"
-      - name: ""
+      - name: "deoxycytidine aminohydrolase"
       - metabolites: !!omap
           - MAM01668c: -1
           - MAM01673c: 1
@@ -62625,7 +62635,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04577"
-      - name: ""
+      - name: "Orotidine-5'-phosphate:diphosphate phospho-alpha-D-ribosyl-transferase"
       - metabolites: !!omap
           - MAM02659c: 1
           - MAM02660c: -1
@@ -62642,7 +62652,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04579"
-      - name: ""
+      - name: "uridine:phosphate alpha-D-ribosyltransferase"
       - metabolites: !!omap
           - MAM02751c: -1
           - MAM02844c: 1
@@ -62659,7 +62669,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04580"
-      - name: ""
+      - name: "Cytidine aminohydrolase"
       - metabolites: !!omap
           - MAM01630c: -1
           - MAM02040c: -1
@@ -62676,7 +62686,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04608"
-      - name: ""
+      - name: "(S)-dihydroorotate amidohydrolase"
       - metabolites: !!omap
           - MAM00180c: -1
           - MAM02039c: 1
@@ -62693,7 +62703,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04575"
-      - name: ""
+      - name: "(S)-dihydroorotate:NAD+ oxidoreductase"
       - metabolites: !!omap
           - MAM00180c: -1
           - MAM02659c: 1
@@ -62710,7 +62720,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04637"
-      - name: ""
+      - name: "ATP:dTMP phosphotransferase"
       - metabolites: !!omap
           - MAM01285c: -1
           - MAM01371c: 1
@@ -62727,7 +62737,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04643"
-      - name: ""
+      - name: "dUTP nucleotidohydrolase"
       - metabolites: !!omap
           - MAM01755m: 1
           - MAM01756m: -1
@@ -62745,7 +62755,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04644"
-      - name: ""
+      - name: "5,10-Methylenetetrahydrofolate:dUMP C-methyltransferase"
       - metabolites: !!omap
           - MAM01045c: -1
           - MAM01700c: 1
@@ -62762,7 +62772,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04672"
-      - name: ""
+      - name: "dCTP aminohydrolase"
       - metabolites: !!omap
           - MAM01645c: -1
           - MAM01756c: 1
@@ -62797,7 +62807,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04736"
-      - name: ""
+      - name: "(R)-5,6-dihydrothymine amidohydrolase"
       - metabolites: !!omap
           - MAM00922c: 1
           - MAM01705c: -1
@@ -62814,7 +62824,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04819"
-      - name: ""
+      - name: "(R)-3-ureidoisobutyrate amidohydrolase"
       - metabolites: !!omap
           - MAM00922c: -1
           - MAM01596c: 1
@@ -62833,7 +62843,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR05299"
-      - name: ""
+      - name: "ATP:uridine 5'-phosphotransferase"
       - metabolites: !!omap
           - MAM01285c: 1
           - MAM01371c: -1
@@ -62869,7 +62879,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR05415"
-      - name: ""
+      - name: "2'-deoxyadenosine 5'-diphosphate:oxidized-thioredoxin 2'-oxidoreductase"
       - metabolites: !!omap
           - MAM01285m: 1
           - MAM01637m: -1
@@ -62887,7 +62897,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR05416"
-      - name: ""
+      - name: "2'-deoxyguanosine 5'-diphosphate:oxidized-thioredoxin 2'-oxidoreductase"
       - metabolites: !!omap
           - MAM01680m: -1
           - MAM01948m: 1
@@ -62905,7 +62915,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR05417"
-      - name: ""
+      - name: "NADPH:oxidized-thioredoxin oxidoreductase"
       - metabolites: !!omap
           - MAM02039m: -1
           - MAM02486m: -1
@@ -62957,7 +62967,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR06621"
-      - name: ""
+      - name: "2'-deoxyuridine 5'-triphosphate:oxydized-thioredoxin 2'-oxidoreductase"
       - metabolites: !!omap
           - MAM01756m: -1
           - MAM02040m: -1
@@ -62975,7 +62985,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR06622"
-      - name: ""
+      - name: "2'-deoxyuridine 5'-triphosphate:oxydized-thioredoxin 2'-oxidoreductase"
       - metabolites: !!omap
           - MAM01756n: 1
           - MAM02040n: 1
@@ -63046,7 +63056,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR08637"
-      - name: ""
+      - name: "Cytosine aminohydrolase"
       - metabolites: !!omap
           - MAM01632c: -1
           - MAM02040c: -1
@@ -63081,7 +63091,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03966"
-      - name: ""
+      - name: "ATP diphosphohydrolase (diphosphate-forming)"
       - metabolites: !!omap
           - MAM01334m: 1
           - MAM01371m: -1
@@ -63116,7 +63126,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03968"
-      - name: ""
+      - name: "ATP:dUMP phosphotransferase"
       - metabolites: !!omap
           - MAM01285c: -1
           - MAM01371c: 1
@@ -63133,7 +63143,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04024"
-      - name: ""
+      - name: "ATP:CMP phosphotransferase"
       - metabolites: !!omap
           - MAM01285c: -1
           - MAM01371c: 1
@@ -63150,7 +63160,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04083"
-      - name: ""
+      - name: "ATP:adenosine 5'-phosphotransferase"
       - metabolites: !!omap
           - MAM01280m: -1
           - MAM01285m: 1
@@ -63168,7 +63178,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04136"
-      - name: ""
+      - name: "GTP phosphohydrolase"
       - metabolites: !!omap
           - MAM01948e: 1
           - MAM02034e: -1
@@ -63186,7 +63196,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04180"
-      - name: ""
+      - name: "ATP:cytidine 5'-phosphotransferase"
       - metabolites: !!omap
           - MAM01285c: 1
           - MAM01371c: -1
@@ -63204,7 +63214,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04185"
-      - name: ""
+      - name: "ATP:sulfate adenylyltransferase"
       - metabolites: !!omap
           - MAM01283c: 1
           - MAM01371c: -1
@@ -63222,7 +63232,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04186"
-      - name: ""
+      - name: "ATP:adenylylsulfate 3'-phosphotransferase"
       - metabolites: !!omap
           - MAM01283c: -1
           - MAM01285c: 1
@@ -63240,7 +63250,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04342"
-      - name: ""
+      - name: "IDP phosphohydrolase"
       - metabolites: !!omap
           - MAM02039e: 1
           - MAM02040e: -1
@@ -63258,7 +63268,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04344"
-      - name: ""
+      - name: "5,6-dihydrouracil:NAD+ oxidoreductase"
       - metabolites: !!omap
           - MAM01052c: -1
           - MAM02039c: 1
@@ -63276,7 +63286,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04483"
-      - name: ""
+      - name: "ATP:thymidine 5'-phosphotransferase"
       - metabolites: !!omap
           - MAM01285m: 1
           - MAM01371m: -1
@@ -63294,7 +63304,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04507"
-      - name: ""
+      - name: "dCMP aminohydrolase"
       - metabolites: !!omap
           - MAM01644c: -1
           - MAM01755c: 1
@@ -63311,7 +63321,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04640"
-      - name: ""
+      - name: "ATP:dUMP phosphotransferase"
       - metabolites: !!omap
           - MAM01285m: 1
           - MAM01371m: -1
@@ -63328,7 +63338,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04680"
-      - name: ""
+      - name: "deoxyuridine:orthophosphate 2-deoxy-D-ribosyltransferase"
       - metabolites: !!omap
           - MAM00639c: -1
           - MAM01673c: 1
@@ -63345,7 +63355,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04806"
-      - name: ""
+      - name: "10-formyltetrahydrofolate:5'-phosphoribosylglycinamide formyltransferase"
       - metabolites: !!omap
           - MAM00266c: -1
           - MAM01940c: -1
@@ -63363,7 +63373,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR05394"
-      - name: ""
+      - name: "Guanosine aminohydrolase"
       - metabolites: !!omap
           - MAM02038c: -1
           - MAM02040c: -1
@@ -63380,7 +63390,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR06625"
-      - name: ""
+      - name: "ATP:deoxyuridine 5'-phosphotransferase"
       - metabolites: !!omap
           - MAM01285m: 1
           - MAM01371m: -1
@@ -63398,14 +63408,14 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR07160"
-      - name: ""
+      - name: "Deoxynucleoside triphosphate:DNA deoxynucleotidyltransferase"
       - metabolites: !!omap
-          - MAM01642c: -0.3
-          - MAM01645c: -0.2
-          - MAM01688c: -0.2
-          - MAM01721c: 1
-          - MAM01753c: -0.3
-          - MAM02759c: 1
+          - MAM01642n: -0.3
+          - MAM01645n: -0.2
+          - MAM01688n: -0.2
+          - MAM01721n: 1
+          - MAM01753n: -0.3
+          - MAM02759n: 1
       - lower_bound: 0
       - upper_bound: 1000
       - gene_reaction_rule: "(Chrac-14 and PolE4) or (PolD1 and PolD2) or (PolA1 and PolA2) or (Chrac-14 and PolA1 and PolA2 and PolD1 and PolD2 and PolE1 and PolE2 and PolE4) or Mybbp1A or PolG1 or PolG2 or PolH or PolI or PolQ or PolZ1 or RfC3 or Trf4-1 or Trf4-2"
@@ -63417,14 +63427,14 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR07161"
-      - name: ""
+      - name: "nucleoside-triphosphate:RNA nucleotidyltransferase (DNA-directed)"
       - metabolites: !!omap
-          - MAM01371c: -0.18
-          - MAM01623c: -0.3
-          - MAM02034c: -0.34
-          - MAM02759c: 1
-          - MAM02847c: 1
-          - MAM03130c: -0.18
+          - MAM01371n: -0.18
+          - MAM01623n: -0.3
+          - MAM02034n: -0.34
+          - MAM02759n: 1
+          - MAM02847n: 1
+          - MAM03130n: -0.18
       - lower_bound: 0
       - upper_bound: 1000
       - gene_reaction_rule: "(hrg or wisp) and Ada2a and MTPAP and Polr1A and Polr1B and Polr1C and Polr1D and Polr1E and Polr1H and Polr2A and Polr2B and Polr2C and Polr2E and Polr2F and Polr2G and Polr2H and Polr2I and Polr2J and Polr2K and Polr2L and Polr3A and Polr3B and Polr3C and Polr3D and Polr3E and Polr3F and Polr3G and Polr3H and Polr3K and PolrMT and mkg-p"
@@ -63438,12 +63448,12 @@
       - id: "MAR07162"
       - name: ""
       - metabolites: !!omap
-          - MAM01285c: -0.18
-          - MAM01424c: -0.3
-          - MAM01948c: -0.34
-          - MAM02751c: 1
-          - MAM02847c: 1
-          - MAM03106c: -0.18
+          - MAM01285c: 0.18
+          - MAM01424c: 0.3
+          - MAM01948c: 0.34
+          - MAM02751c: -1
+          - MAM02847c: -1
+          - MAM03106c: 0.18
       - lower_bound: 0
       - upper_bound: 1000
       - gene_reaction_rule: "(hrg or wisp) and Ada2a and MTPAP and Polr1A and Polr1B and Polr1C and Polr1D and Polr1E and Polr1H and Polr2A and Polr2B and Polr2C and Polr2E and Polr2F and Polr2G and Polr2H and Polr2I and Polr2J and Polr2K and Polr2L and Polr3A and Polr3B and Polr3C and Polr3D and Polr3E and Polr3F and Polr3G and Polr3H and Polr3K and PolrMT and mkg-p"
@@ -63457,13 +63467,13 @@
       - id: "MAR07163"
       - name: ""
       - metabolites: !!omap
-          - MAM01639c: 0.3
-          - MAM01644c: 0.2
-          - MAM01686c: 0.2
-          - MAM01721c: -1
-          - MAM01752c: 0.3
-          - MAM02039c: 1
-          - MAM02040c: -1
+          - MAM01639n: 0.3
+          - MAM01644n: 0.2
+          - MAM01686n: 0.2
+          - MAM01721n: -1
+          - MAM01752n: 0.3
+          - MAM02039n: 1
+          - MAM02040n: -1
       - lower_bound: 0
       - upper_bound: 1000
       - gene_reaction_rule: "(Rad1 and Rad9) or CG3165 or mus304"
@@ -63495,7 +63505,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR07713"
-      - name: ""
+      - name: "adenosine 5'-monophosphate phosphohydrolase"
       - metabolites: !!omap
           - MAM01280l: 1
           - MAM01334l: -1
@@ -63512,7 +63522,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR07716"
-      - name: ""
+      - name: "uridine 5'-monophosphate phosphohydrolase"
       - metabolites: !!omap
           - MAM02040l: -1
           - MAM02751l: 1
@@ -63529,7 +63539,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR07717"
-      - name: ""
+      - name: "uridine 5'-monophosphate phosphohydrolase"
       - metabolites: !!omap
           - MAM02040m: -1
           - MAM02751m: 1
@@ -63546,7 +63556,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR07721"
-      - name: ""
+      - name: "cytidine-5'-monophosphate phosphohydrolase"
       - metabolites: !!omap
           - MAM01590l: -1
           - MAM01630l: 1
@@ -63563,7 +63573,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR07725"
-      - name: ""
+      - name: "thymidylate 5'-phosphohydrolase"
       - metabolites: !!omap
           - MAM01752l: -1
           - MAM02040l: -1
@@ -63580,7 +63590,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR07728"
-      - name: ""
+      - name: "guanosine 5'-monophosphate phosphohydrolase"
       - metabolites: !!omap
           - MAM02016l: -1
           - MAM02038l: 1
@@ -63849,7 +63859,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR07876"
-      - name: ""
+      - name: "ATP:UMP phosphotransferase"
       - metabolites: !!omap
           - MAM01285n: -1
           - MAM01371n: 1
@@ -63866,7 +63876,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR07878"
-      - name: ""
+      - name: "ATP:dIDP phosphotransferase"
       - metabolites: !!omap
           - MAM01285c: -1
           - MAM01371c: 1
@@ -63901,7 +63911,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR07881"
-      - name: ""
+      - name: "ATP:dIDP phosphotransferase"
       - metabolites: !!omap
           - MAM01285n: -1
           - MAM01371n: 1
@@ -63918,7 +63928,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR07882"
-      - name: ""
+      - name: "ATP:GDP phosphotransferase"
       - metabolites: !!omap
           - MAM01285n: -1
           - MAM01371n: 1
@@ -63935,7 +63945,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR07883"
-      - name: ""
+      - name: "ATP:UDP phosphotransferase"
       - metabolites: !!omap
           - MAM01285m: -1
           - MAM01371m: 1
@@ -63952,7 +63962,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR07884"
-      - name: ""
+      - name: "ATP:UDP phosphotransferase"
       - metabolites: !!omap
           - MAM01285n: -1
           - MAM01371n: 1
@@ -63969,7 +63979,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR07885"
-      - name: ""
+      - name: "ATP:CDP phosphotransferase"
       - metabolites: !!omap
           - MAM01285n: -1
           - MAM01371n: 1
@@ -63986,7 +63996,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR07886"
-      - name: ""
+      - name: "ATP:dTDP phosphotransferase"
       - metabolites: !!omap
           - MAM01285m: -1
           - MAM01371m: 1
@@ -64003,7 +64013,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR07887"
-      - name: ""
+      - name: "ATP:dTDP phosphotransferase"
       - metabolites: !!omap
           - MAM01285n: -1
           - MAM01371n: 1
@@ -64020,7 +64030,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR07888"
-      - name: ""
+      - name: "ATP:dGDP phosphotransferase"
       - metabolites: !!omap
           - MAM01285n: -1
           - MAM01371n: 1
@@ -64037,7 +64047,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR07889"
-      - name: ""
+      - name: "ATP:dUDP phosphotransferase"
       - metabolites: !!omap
           - MAM01285n: -1
           - MAM01371n: 1
@@ -64054,7 +64064,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR07890"
-      - name: ""
+      - name: "ATP:dCDP phosphotransferase"
       - metabolites: !!omap
           - MAM01285m: -1
           - MAM01371m: 1
@@ -64071,7 +64081,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR07891"
-      - name: ""
+      - name: "ATP:dCDP phosphotransferase"
       - metabolites: !!omap
           - MAM01285n: -1
           - MAM01371n: 1
@@ -64088,7 +64098,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR07892"
-      - name: ""
+      - name: "ATP:dADP phosphotransferase"
       - metabolites: !!omap
           - MAM01285n: -1
           - MAM01371n: 1
@@ -64105,7 +64115,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR07893"
-      - name: ""
+      - name: "ATP:IDP phosphotransferase"
       - metabolites: !!omap
           - MAM01285n: -1
           - MAM01371n: 1
@@ -64122,7 +64132,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR07894"
-      - name: ""
+      - name: "ATP:dIDP phosphotransferase"
       - metabolites: !!omap
           - MAM01285m: -1
           - MAM01371m: 1
@@ -64139,7 +64149,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR07895"
-      - name: ""
+      - name: "ATP:IDP phosphotransferase"
       - metabolites: !!omap
           - MAM01285m: -1
           - MAM01371m: 1
@@ -64156,7 +64166,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR08083"
-      - name: ""
+      - name: "Guanosine 3',5'-cyclic phosphate 5'-nucleotidohydrolase"
       - metabolites: !!omap
           - MAM01433n: -1
           - MAM02016n: 1
@@ -64173,7 +64183,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR08085"
-      - name: ""
+      - name: "Guanosine 3',5'-cyclic phosphate 5'-nucleotidohydrolase"
       - metabolites: !!omap
           - MAM01433g: -1
           - MAM02016g: 1
@@ -64190,7 +64200,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR08087"
-      - name: ""
+      - name: "adenosine 3',5'-phosphate 5'-nucleotidohydrolase"
       - metabolites: !!omap
           - MAM01334g: 1
           - MAM01419g: -1
@@ -64207,7 +64217,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR08443"
-      - name: ""
+      - name: "ADP-glucose glucose-1-phosphohydrolase"
       - metabolites: !!omap
           - MAM01286c: -1
           - MAM01334c: 1
@@ -64225,7 +64235,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR08444"
-      - name: ""
+      - name: "ADPmannose sugarphosphohydrolase"
       - metabolites: !!omap
           - MAM01287c: -1
           - MAM01334c: 1
@@ -64243,7 +64253,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR08445"
-      - name: ""
+      - name: "ATP:cytidine 5'-phosphotransferase"
       - metabolites: !!omap
           - MAM01285m: 1
           - MAM01371m: -1
@@ -64429,7 +64439,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR08458"
-      - name: ""
+      - name: "ATP:CMP phosphotransferase"
       - metabolites: !!omap
           - MAM01285n: -1
           - MAM01371n: 1
@@ -64446,7 +64456,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR08459"
-      - name: ""
+      - name: "ATP:dCMP phosphotransferase"
       - metabolites: !!omap
           - MAM01285n: -1
           - MAM01371n: 1
@@ -64682,7 +64692,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR08474"
-      - name: ""
+      - name: "ATP diphosphohydrolase (phosphate-forming)"
       - metabolites: !!omap
           - MAM01334e: 1
           - MAM01371e: -1
@@ -64717,7 +64727,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR08482"
-      - name: ""
+      - name: "NADPH:oxidized-thioredoxin oxidoreductase"
       - metabolites: !!omap
           - MAM02039m: -1
           - MAM02554m: 1
@@ -64735,7 +64745,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR08483"
-      - name: ""
+      - name: "dUTP nucleotidohydrolase"
       - metabolites: !!omap
           - MAM01755n: 1
           - MAM01756n: -1
@@ -64753,7 +64763,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR08484"
-      - name: ""
+      - name: "ATP:inosine 5'-phosphotransferase"
       - metabolites: !!omap
           - MAM01285m: 1
           - MAM01371m: -1
@@ -64771,7 +64781,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR08485"
-      - name: ""
+      - name: "UDP phosphohydrolase"
       - metabolites: !!omap
           - MAM02039g: 1
           - MAM02040g: -1
@@ -64789,7 +64799,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR08486"
-      - name: ""
+      - name: "adenosine:phosphate alpha-D-ribosyltransferase"
       - metabolites: !!omap
           - MAM01279c: 1
           - MAM01280c: -1
@@ -64806,7 +64816,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR08487"
-      - name: ""
+      - name: "uridine 5'-monophosphate phosphohydrolase"
       - metabolites: !!omap
           - MAM02040e: -1
           - MAM02751e: 1
@@ -64823,7 +64833,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR08488"
-      - name: ""
+      - name: "XTP pyrophosphohydrolase"
       - metabolites: !!omap
           - MAM02039c: 1
           - MAM02040c: -1
@@ -64841,7 +64851,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR08489"
-      - name: ""
+      - name: "Inosine 5'-triphosphate pyrophosphohydrolase"
       - metabolites: !!omap
           - MAM02039c: 1
           - MAM02040c: -1
@@ -64859,7 +64869,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR08493"
-      - name: ""
+      - name: "2'-deoxycytidine 5'-monophosphate phosphohydrolase"
       - metabolites: !!omap
           - MAM01644l: -1
           - MAM01668l: 1
@@ -64876,7 +64886,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR08494"
-      - name: ""
+      - name: "2'-deoxyadenosine 5'-monophosphate phosphohydrolase"
       - metabolites: !!omap
           - MAM01639l: -1
           - MAM01666l: 1
@@ -64893,7 +64903,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR08495"
-      - name: ""
+      - name: "2'-deoxyguanosine 5'-monophosphate phosphohydrolase"
       - metabolites: !!omap
           - MAM01669l: 1
           - MAM01686l: -1
@@ -64910,7 +64920,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03802"
-      - name: ""
+      - name: "L-glutamate:NAD+ oxidoreductase (deaminating)"
       - metabolites: !!omap
           - MAM01306m: -1
           - MAM01974m: 1
@@ -64930,7 +64940,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03804"
-      - name: ""
+      - name: "L-glutamate:NADP+ oxidoreductase (deaminating)"
       - metabolites: !!omap
           - MAM01306m: -1
           - MAM01974m: 1
@@ -64950,7 +64960,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03811"
-      - name: ""
+      - name: "L-Citrulline:L-aspartate ligase (AMP-forming)"
       - metabolites: !!omap
           - MAM01334c: 1
           - MAM01366c: 1
@@ -64970,7 +64980,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03813"
-      - name: ""
+      - name: "2-(Nomega-L-arginino)succinate arginine-lyase (fumarate-forming)"
       - metabolites: !!omap
           - MAM01365c: -1
           - MAM01366c: 1
@@ -64986,7 +64996,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03822"
-      - name: ""
+      - name: "(S)-1-pyrroline-5-carboxylate:NAD+ oxidoreductase"
       - metabolites: !!omap
           - MAM00559m: -1
           - MAM01974m: 1
@@ -65005,7 +65015,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03827"
-      - name: ""
+      - name: "L-Aspartate:2-oxoglutarate aminotransferase"
       - metabolites: !!omap
           - MAM01306m: -1
           - MAM01370m: -1
@@ -65022,7 +65032,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03829"
-      - name: ""
+      - name: "L-Aspartate:2-oxoglutarate aminotransferase"
       - metabolites: !!omap
           - MAM01306c: -1
           - MAM01370c: -1
@@ -65039,7 +65049,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03831"
-      - name: ""
+      - name: "L-aspartate ammonia-lyase (fumarate-forming)"
       - metabolites: !!omap
           - MAM01370c: -1
           - MAM01862c: 1
@@ -65056,7 +65066,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03862"
-      - name: ""
+      - name: "L-asparagine amidohydrolase"
       - metabolites: !!omap
           - MAM01369m: -1
           - MAM01370m: 1
@@ -65074,7 +65084,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03865"
-      - name: ""
+      - name: "3-sulfino-L-alanine:2-oxoglutarate aminotransferase"
       - metabolites: !!omap
           - MAM00918m: -1
           - MAM00919m: 1
@@ -65092,7 +65102,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03890"
-      - name: ""
+      - name: "L-Glutamate:ammonia ligase (ADP-forming)"
       - metabolites: !!omap
           - MAM01285c: 1
           - MAM01371c: -1
@@ -65111,7 +65121,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03892"
-      - name: ""
+      - name: "L-glutamine amidohydrolase"
       - metabolites: !!omap
           - MAM01974m: 1
           - MAM01975m: -1
@@ -65129,7 +65139,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR09802"
-      - name: ""
+      - name: "L-glutamine amidohydrolase"
       - metabolites: !!omap
           - MAM01974c: 1
           - MAM01975c: -1
@@ -65147,7 +65157,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03899"
-      - name: ""
+      - name: "L-Alanine:2-oxoglutarate aminotransferase"
       - metabolites: !!omap
           - MAM01306c: -1
           - MAM01307c: -1
@@ -65164,7 +65174,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03903"
-      - name: ""
+      - name: "L-aspartate:L-glutamine amido-ligase (AMP-forming)"
       - metabolites: !!omap
           - MAM01334c: 1
           - MAM01369c: 1
@@ -65186,7 +65196,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04109"
-      - name: ""
+      - name: "L-Alanine:2-oxoglutarate aminotransferase"
       - metabolites: !!omap
           - MAM01306m: -1
           - MAM01307m: -1
@@ -65203,7 +65213,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04114"
-      - name: ""
+      - name: "2-oxoglutaramate amidohydrolase"
       - metabolites: !!omap
           - MAM00672c: -1
           - MAM01306c: 1
@@ -65221,7 +65231,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04115"
-      - name: ""
+      - name: "2-oxoglutaramate amidohydrolase"
       - metabolites: !!omap
           - MAM00672m: -1
           - MAM01306m: 1
@@ -65239,7 +65249,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04172"
-      - name: ""
+      - name: "L-asparagine amidohydrolase"
       - metabolites: !!omap
           - MAM01369c: -1
           - MAM01370c: 1
@@ -65257,7 +65267,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04196"
-      - name: ""
+      - name: "L-Glutamine:pyruvate aminotransferase"
       - metabolites: !!omap
           - MAM00672c: 1
           - MAM01307c: 1
@@ -65274,7 +65284,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04197"
-      - name: ""
+      - name: "L-Glutamine:pyruvate aminotransferase"
       - metabolites: !!omap
           - MAM00672m: 1
           - MAM01307m: 1
@@ -65291,7 +65301,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04287"
-      - name: ""
+      - name: "succinate-semialdehyde:NADP+ oxidoreductase"
       - metabolites: !!omap
           - MAM02039m: 2
           - MAM02040m: -1
@@ -65310,7 +65320,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04690"
-      - name: ""
+      - name: "L-glutamate 1-carboxy-lyase (4-aminobutanoate-forming)"
       - metabolites: !!omap
           - MAM00970c: 1
           - MAM01596c: 1
@@ -65327,7 +65337,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04693"
-      - name: ""
+      - name: "4-aminobutanoate:2-oxoglutarate aminotransferase"
       - metabolites: !!omap
           - MAM00970m: -1
           - MAM01306m: -1
@@ -65344,7 +65354,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR06780"
-      - name: ""
+      - name: "L-tyrosine:2-oxoglutarate aminotransferase"
       - metabolites: !!omap
           - MAM01005m: 1
           - MAM01306m: -1
@@ -65410,7 +65420,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR07641"
-      - name: ""
+      - name: "D-Aspartate:oxygen oxidoreductase (deaminating)"
       - metabolites: !!omap
           - MAM01641x: -1
           - MAM02039x: 1
@@ -65430,7 +65440,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR07642"
-      - name: ""
+      - name: "alanine racemase"
       - metabolites: !!omap
           - MAM01307c: 1
           - MAM01638c: -1
@@ -65445,7 +65455,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03806"
-      - name: ""
+      - name: "L-glutamate gamma-semialdehyde:NAD+ oxidoreductase"
       - metabolites: !!omap
           - MAM01974m: -1
           - MAM02039m: -2
@@ -65464,7 +65474,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03807"
-      - name: ""
+      - name: "L-Ornithine:2-oxo-acid aminotransferase"
       - metabolites: !!omap
           - MAM01306m: -1
           - MAM01974m: 1
@@ -65481,7 +65491,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03816"
-      - name: ""
+      - name: "L-Arginine amidinohydrolase"
       - metabolites: !!omap
           - MAM01365c: -1
           - MAM02040c: -1
@@ -65532,7 +65542,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03832"
-      - name: ""
+      - name: "L-Arginine iminohydrolase"
       - metabolites: !!omap
           - MAM01365c: -1
           - MAM01588c: 1
@@ -65550,7 +65560,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03833"
-      - name: ""
+      - name: "L-Proline:NADP+ 5-oxidoreductase"
       - metabolites: !!omap
           - MAM00559c: -1
           - MAM02039c: -2
@@ -65568,7 +65578,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03835"
-      - name: ""
+      - name: "L-Proline:NAD+ 5-oxidoreductase"
       - metabolites: !!omap
           - MAM00559c: -1
           - MAM02039c: -2
@@ -65586,7 +65596,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03837"
-      - name: ""
+      - name: "L-Proline:NAD+ 5-oxidoreductase"
       - metabolites: !!omap
           - MAM00559m: -1
           - MAM02039m: -2
@@ -65622,7 +65632,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03895"
-      - name: ""
+      - name: "ATP:L-glutamate 5-phosphotransferase"
       - metabolites: !!omap
           - MAM01285m: 1
           - MAM01371m: -1
@@ -65639,7 +65649,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03897"
-      - name: ""
+      - name: "L-glutamate-5-semialdehyde:NADP+ 5-oxidoreductase (phosphorylating)"
       - metabolites: !!omap
           - MAM01976m: -1
           - MAM02039m: -1
@@ -65658,7 +65668,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03956"
-      - name: ""
+      - name: "carbonate hydro-lyase (carbon-dioxide-forming)"
       - metabolites: !!omap
           - MAM01596m: -1
           - MAM02039m: 1
@@ -65675,7 +65685,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03993"
-      - name: ""
+      - name: "N-(omega)-Hydroxyarginine,NADPH:oxygen oxidoreductase (nitric-oxide-forming)"
       - metabolites: !!omap
           - MAM01588c: 2
           - MAM02039c: 1
@@ -65696,7 +65706,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04073"
-      - name: ""
+      - name: "S-adenosyl-L-methionine carboxy-lyase [S-adenosyl 3-(methylsulfanyl)propylamine-forming]"
       - metabolites: !!omap
           - MAM01596c: 1
           - MAM02039c: -1
@@ -65713,7 +65723,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04075"
-      - name: ""
+      - name: "S-adenosylmethioninamine:putrescine 3-aminopropyltransferase"
       - metabolites: !!omap
           - MAM01116c: 1
           - MAM02039c: 1
@@ -65731,7 +65741,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04077"
-      - name: ""
+      - name: "S-adenosylmethioninamine:spermidine 3-aminopropyltransferase"
       - metabolites: !!omap
           - MAM01116c: 1
           - MAM02039c: 1
@@ -65749,7 +65759,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04190"
-      - name: ""
+      - name: "L-arginine,NADPH:oxygen oxidoreductase (N-(omega)-hydroxyarginine-forming)"
       - metabolites: !!omap
           - MAM01365c: -1
           - MAM02039c: -1
@@ -65769,7 +65779,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04191"
-      - name: ""
+      - name: "L-arginine carboxy-lyase (agmatine-forming)"
       - metabolites: !!omap
           - MAM01303m: 1
           - MAM01365m: -1
@@ -65786,7 +65796,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04212"
-      - name: ""
+      - name: "L-ornithine carboxy-lyase (putrescine-forming)"
       - metabolites: !!omap
           - MAM01596c: 1
           - MAM02039c: -1
@@ -65803,7 +65813,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04422"
-      - name: ""
+      - name: "L-ornithine carboxy-lyase (putrescine-forming)"
       - metabolites: !!omap
           - MAM01596e: 1
           - MAM02039e: -1
@@ -65820,7 +65830,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04605"
-      - name: ""
+      - name: "4-Aminobutyraldehyde:NAD+ oxidoreductase"
       - metabolites: !!omap
           - MAM00969m: -1
           - MAM00970m: 1
@@ -65839,7 +65849,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04776"
-      - name: ""
+      - name: "L-Proline,2-oxoglutarate:oxygen oxidoreductase (4-hydroxylating)"
       - metabolites: !!omap
           - MAM01306c: -1
           - MAM01596c: 1
@@ -65858,7 +65868,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04777"
-      - name: ""
+      - name: "L-Proline,2-oxoglutarate:oxygen oxidoreductase (4-hydroxylating)"
       - metabolites: !!omap
           - MAM01306m: -1
           - MAM01596m: 1
@@ -65877,7 +65887,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04778"
-      - name: ""
+      - name: "trans-4-Hydroxy-L-proline:NAD+ 5-oxidoreductase"
       - metabolites: !!omap
           - MAM02039c: 2
           - MAM02320c: 1
@@ -65895,7 +65905,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04779"
-      - name: ""
+      - name: "trans-4-Hydroxy-L-proline:NAD+ 5-oxidoreductase"
       - metabolites: !!omap
           - MAM02039m: 2
           - MAM02320m: 1
@@ -65913,7 +65923,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04780"
-      - name: ""
+      - name: "trans-4-Hydroxy-L-proline:NADP+ 5-oxidoreductase"
       - metabolites: !!omap
           - MAM02039c: 2
           - MAM02320c: 1
@@ -65931,7 +65941,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04781"
-      - name: ""
+      - name: "trans-4-Hydroxy-L-proline:NADP+ 5-oxidoreductase"
       - metabolites: !!omap
           - MAM02039m: 2
           - MAM02320m: 1
@@ -65949,7 +65959,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04784"
-      - name: ""
+      - name: "L-1-pyrroline-3-hydroxy-5-carboxylate:NAD+ oxidoreductase"
       - metabolites: !!omap
           - MAM02039m: 1
           - MAM02040m: -2
@@ -65968,7 +65978,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04785"
-      - name: ""
+      - name: "L-1-pyrroline-3-hydroxy-5-carboxylate:NADP+ oxidoreductase"
       - metabolites: !!omap
           - MAM02039m: 1
           - MAM02040m: -2
@@ -65987,7 +65997,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04786"
-      - name: ""
+      - name: "L-erythro-4-hydroxyglutamate:2-oxoglutarate aminotransferase"
       - metabolites: !!omap
           - MAM00989m: 1
           - MAM01306m: -1
@@ -66004,7 +66014,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR05384"
-      - name: ""
+      - name: "S-methyl-5'-thioadenosine:phosphate S-methyl-5-thio-alpha-D-ribosyl-transferase"
       - metabolites: !!omap
           - MAM01116c: -1
           - MAM01279c: 1
@@ -66201,7 +66211,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR06958"
-      - name: ""
+      - name: "N1-acetylspermine:oxygen oxidoreductase (3-acetamidopropanal-forming)"
       - metabolites: !!omap
           - MAM01250c: 1
           - MAM02040c: -1
@@ -66220,7 +66230,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR06959"
-      - name: ""
+      - name: "N1-acetylspermine:oxygen oxidoreductase (3-acetamidopropanal-forming)"
       - metabolites: !!omap
           - MAM01250x: 1
           - MAM02040x: -1
@@ -66257,7 +66267,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR06961"
-      - name: ""
+      - name: "N1-acetylspermidine:oxygen oxidoreductase (3-acetamidopropanal-forming)"
       - metabolites: !!omap
           - MAM01250c: 1
           - MAM02040c: -1
@@ -66276,7 +66286,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR06962"
-      - name: ""
+      - name: "N1-acetylspermidine:oxygen oxidoreductase (3-acetamidopropanal-forming)"
       - metabolites: !!omap
           - MAM01250x: 1
           - MAM02040x: -1
@@ -66333,7 +66343,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR06965"
-      - name: ""
+      - name: "spermidine:NAD+ oxidoreductase"
       - metabolites: !!omap
           - MAM01661c: -1
           - MAM02039c: -1
@@ -66420,7 +66430,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR08097"
-      - name: ""
+      - name: "L-erythro-4-Hydroxyglutamate:NAD+ oxidoreductase"
       - metabolites: !!omap
           - MAM02039m: -2
           - MAM02040m: 1
@@ -66439,7 +66449,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR08098"
-      - name: ""
+      - name: "D-aspartate:2-oxoglutarate aminotransferase"
       - metabolites: !!omap
           - MAM00989m: 1
           - MAM01370m: 1
@@ -66456,7 +66466,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR08425"
-      - name: ""
+      - name: "N2-Acetyl-L-ornithine amidohydrolase"
       - metabolites: !!omap
           - MAM01252c: 1
           - MAM02040c: -1
@@ -66473,7 +66483,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR08426"
-      - name: ""
+      - name: "L-Arginine amidinohydrolase"
       - metabolites: !!omap
           - MAM01365m: -1
           - MAM02040m: -1
@@ -66543,7 +66553,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR08603"
-      - name: ""
+      - name: "acetyl-CoA:putrescine N-acetyltransferase"
       - metabolites: !!omap
           - MAM01261c: -1
           - MAM01597c: 1
@@ -66561,7 +66571,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR08604"
-      - name: ""
+      - name: "N-Acetylputrescine:oxygen oxidoreductase(deaminating)(flavin-containing)"
       - metabolites: !!omap
           - MAM02039c: 1
           - MAM02040c: -1
@@ -66581,7 +66591,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR08605"
-      - name: ""
+      - name: "N4-Acetylaminobutanal:NAD+ oxidoreductase"
       - metabolites: !!omap
           - MAM00952c: 1
           - MAM02039c: 2
@@ -66618,7 +66628,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR08608"
-      - name: ""
+      - name: "D-Proline:oxygen oxidoreductase"
       - metabolites: !!omap
           - MAM00558c: 1
           - MAM01742c: -1
@@ -66636,7 +66646,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR08609"
-      - name: ""
+      - name: "L-Proline:NADP+ 5-oxidoreductase"
       - metabolites: !!omap
           - MAM00559m: -1
           - MAM02039m: -2
@@ -66654,7 +66664,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR08610"
-      - name: ""
+      - name: "L-proline:(acceptor) oxidoreductase"
       - metabolites: !!omap
           - MAM00559c: 1
           - MAM01802c: -1
@@ -66672,7 +66682,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR08611"
-      - name: ""
+      - name: "L-proline:(acceptor) oxidoreductase"
       - metabolites: !!omap
           - MAM00559m: 1
           - MAM01802m: -1
@@ -66690,7 +66700,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04285"
-      - name: ""
+      - name: "succinate-semialdehyde:NAD+ oxidoreductase"
       - metabolites: !!omap
           - MAM02039m: 2
           - MAM02040m: -1
@@ -66709,7 +66719,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR00457"
-      - name: ""
+      - name: "ATP:(R)-glycerate 3-phosphotransferase"
       - metabolites: !!omap
           - MAM00913c: 1
           - MAM01285c: 1
@@ -66727,7 +66737,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR00460"
-      - name: ""
+      - name: "ATP:(R)-glycerate 3-phosphotransferase"
       - metabolites: !!omap
           - MAM00913m: 1
           - MAM01285m: 1
@@ -66780,7 +66790,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03770"
-      - name: ""
+      - name: "3-methylbutanoyl-CoA:electron-transfer flavoprotein 2,3-oxidoreductase"
       - metabolites: !!omap
           - MAM00826m: -1
           - MAM01802m: 1
@@ -66868,7 +66878,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03839"
-      - name: ""
+      - name: "3-Phospho-D-glycerate:NAD+ 2-oxidoreductase"
       - metabolites: !!omap
           - MAM00913c: -1
           - MAM00914c: 1
@@ -66886,7 +66896,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03841"
-      - name: ""
+      - name: "3-Phosphoserine:2-oxoglutarate aminotransferase"
       - metabolites: !!omap
           - MAM00914c: -1
           - MAM00916c: 1
@@ -66903,7 +66913,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03843"
-      - name: ""
+      - name: "O-phospho-L-serine phosphohydrolase"
       - metabolites: !!omap
           - MAM00916c: -1
           - MAM02040c: -1
@@ -66920,7 +66930,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03845"
-      - name: ""
+      - name: "5,10-Methylenetetrahydrofolate:glycine hydroxymethyltransferase"
       - metabolites: !!omap
           - MAM01045c: 1
           - MAM01986c: 1
@@ -66938,7 +66948,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03847"
-      - name: ""
+      - name: "Acetyl-CoA:glycine C-acetyltransferase"
       - metabolites: !!omap
           - MAM01261m: 1
           - MAM01597m: -1
@@ -66955,7 +66965,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03849"
-      - name: ""
+      - name: "sarcosine:oxygen oxidoreductase (demethylating)"
       - metabolites: !!omap
           - MAM01831x: 1
           - MAM01986x: 1
@@ -66974,7 +66984,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03856"
-      - name: ""
+      - name: "(R)-Lactaldehyde:NAD+ oxidoreductase"
       - metabolites: !!omap
           - MAM01715c: 1
           - MAM02039c: -1
@@ -67009,7 +67019,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03883"
-      - name: ""
+      - name: "L-serine ammonia-lyase"
       - metabolites: !!omap
           - MAM02039c: 1
           - MAM02578c: 1
@@ -67026,7 +67036,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03901"
-      - name: ""
+      - name: "S-Adenosyl-L-methionine:glycine N-methyltransferase"
       - metabolites: !!omap
           - MAM01986c: -1
           - MAM02039c: 1
@@ -67061,7 +67071,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03974"
-      - name: ""
+      - name: "2-aminoacrylate aminohydrolase"
       - metabolites: !!omap
           - MAM01654c: -1
           - MAM02039c: 1
@@ -67079,7 +67089,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04198"
-      - name: ""
+      - name: "L-Serine:pyruvate aminotransferase"
       - metabolites: !!omap
           - MAM01307c: 1
           - MAM02154c: 1
@@ -67113,7 +67123,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04200"
-      - name: ""
+      - name: "L-serine hydro-lyase"
       - metabolites: !!omap
           - MAM01654c: 1
           - MAM02040c: 1
@@ -67129,7 +67139,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04284"
-      - name: ""
+      - name: "L-threonine acetaldehyde-lyase (glycine-forming)"
       - metabolites: !!omap
           - MAM01249c: 1
           - MAM01986c: 1
@@ -67145,7 +67155,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04466"
-      - name: ""
+      - name: "hydroxypyruvate aldose-ketose-isomerase"
       - metabolites: !!omap
           - MAM00646c: 1
           - MAM02154c: -1
@@ -67160,7 +67170,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04467"
-      - name: ""
+      - name: "L-Serine:pyruvate aminotransferase"
       - metabolites: !!omap
           - MAM01307x: 1
           - MAM02154x: 1
@@ -67213,7 +67223,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04697"
-      - name: ""
+      - name: "p-cumic alcohol:NAD+ oxidoreductase"
       - metabolites: !!omap
           - MAM01393c: 1
           - MAM01394c: -1
@@ -67232,7 +67242,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04698"
-      - name: ""
+      - name: "p-Cumic alcohol:NADP+ oxidoreductase"
       - metabolites: !!omap
           - MAM01393c: 1
           - MAM01394c: -1
@@ -67251,7 +67261,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04700"
-      - name: ""
+      - name: "N,N-dimethylglycine,5,6,7,8-tetrahydrofolate:electron-transferflavoprotein oxidoreductase (demethylating,5,10-methylenetetrahydrofolate-forming)"
       - metabolites: !!omap
           - MAM01708c: 1
           - MAM01831c: -1
@@ -67271,7 +67281,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04742"
-      - name: ""
+      - name: "succinyl-CoA:glycine C-succinyltransferase (decarboxylating)"
       - metabolites: !!omap
           - MAM01074m: 1
           - MAM01596m: 1
@@ -67290,7 +67300,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04788"
-      - name: ""
+      - name: "L-Alanine:glyoxylate aminotransferase"
       - metabolites: !!omap
           - MAM01307m: -1
           - MAM01986m: 1
@@ -67307,7 +67317,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04789"
-      - name: ""
+      - name: "glycine:oxygen oxidoreductase (deaminating)"
       - metabolites: !!omap
           - MAM01986x: -1
           - MAM02007x: 1
@@ -67327,7 +67337,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04791"
-      - name: ""
+      - name: "L-Alanine:glyoxylate aminotransferase"
       - metabolites: !!omap
           - MAM01307x: -1
           - MAM01986x: 1
@@ -67344,7 +67354,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04792"
-      - name: ""
+      - name: "5,10-Methylenetetrahydrofolate:glycine hydroxymethyltransferase"
       - metabolites: !!omap
           - MAM01045m: -1
           - MAM01986m: -1
@@ -67379,7 +67389,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR05392"
-      - name: ""
+      - name: "Tetrahydrofolate:L-glutamate gamma-ligase (ADP-forming)"
       - metabolites: !!omap
           - MAM01285c: 6
           - MAM01371c: -6
@@ -67399,7 +67409,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR05393"
-      - name: ""
+      - name: "tetrahydropteroyl-poly-gamma-glutamate gamma-glutamylhydrolase"
       - metabolites: !!omap
           - MAM01974c: 6
           - MAM02040c: -6
@@ -67416,7 +67426,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR06409"
-      - name: ""
+      - name: "Dihydrolipoamide:NAD+ oxidoreductase"
       - metabolites: !!omap
           - MAM01701m: 1
           - MAM02039m: -1
@@ -67434,7 +67444,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR07702"
-      - name: ""
+      - name: "glycolate:NADP+ oxidoreductase"
       - metabolites: !!omap
           - MAM01998c: 1
           - MAM02007c: -1
@@ -67452,7 +67462,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR07703"
-      - name: ""
+      - name: "glycolate:oxygen 2-oxidoreductase"
       - metabolites: !!omap
           - MAM01998c: -1
           - MAM02007c: 1
@@ -67506,7 +67516,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR08435"
-      - name: ""
+      - name: "glycine:lipoylprotein oxidoreductase (decarboxylating and acceptor-aminomethylating)"
       - metabolites: !!omap
           - MAM01596m: 1
           - MAM01986m: -1
@@ -67524,7 +67534,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR08436"
-      - name: ""
+      - name: "[protein]-S8-aminomethyldihydrolipoyllysine:tetrahydrofolate aminomethyltransferase (ammonia-forming)"
       - metabolites: !!omap
           - MAM01045m: 1
           - MAM01703m: 1
@@ -67543,7 +67553,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR08437"
-      - name: ""
+      - name: "dihydrolipoylprotein:NAD+ oxidoreductase"
       - metabolites: !!omap
           - MAM01703m: 1
           - MAM02039m: -1
@@ -67561,7 +67571,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR08440"
-      - name: ""
+      - name: "p-cumic alcohol:NAD+ oxidoreductase"
       - metabolites: !!omap
           - MAM01393m: 1
           - MAM01394m: -1
@@ -67616,7 +67626,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR09718"
-      - name: ""
+      - name: "ATP:L-homoserine O-phosphotransferase"
       - metabolites: !!omap
           - MAM01285c: 1
           - MAM01371c: -1
@@ -67652,7 +67662,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04428"
-      - name: ""
+      - name: "L-histidine carboxy-lyase (histamine-forming)"
       - metabolites: !!omap
           - MAM01596c: 1
           - MAM02039c: -1
@@ -67669,7 +67679,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04430"
-      - name: ""
+      - name: "N-methylhistamine:oxygen oxidoreductase (deaminating)"
       - metabolites: !!omap
           - MAM02039c: 1
           - MAM02040c: -1
@@ -67689,7 +67699,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04431"
-      - name: ""
+      - name: "3-Methylimidazole acetaldehyde:NAD+ oxidoreductase"
       - metabolites: !!omap
           - MAM02039c: 2
           - MAM02040c: -1
@@ -67794,7 +67804,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR08784"
-      - name: ""
+      - name: "Imidazole acetaldehyde:NAD+ oxidoreductase"
       - metabolites: !!omap
           - MAM02039c: 2
           - MAM02040c: -1
@@ -67813,7 +67823,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR08786"
-      - name: ""
+      - name: "Imidazole acetaldehyde:NAD+ oxidoreductase"
       - metabolites: !!omap
           - MAM02039m: 2
           - MAM02040m: -1
@@ -67832,7 +67842,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04239"
-      - name: ""
+      - name: "2-oxoadipate dehydrogenase complex"
       - metabolites: !!omap
           - MAM00670m: -1
           - MAM01596m: 1
@@ -67851,7 +67861,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04241"
-      - name: ""
+      - name: "S-Adenosyl-L-methionine:histone-L-lysine N6-methyltransferase"
       - metabolites: !!omap
           - MAM02039n: -1
           - MAM02127n: 1
@@ -67869,7 +67879,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04288"
-      - name: ""
+      - name: "N6-(L-1,3-Dicarboxypropyl)-L-lysine:NADP+ oxidoreductase (L-lysine-forming)"
       - metabolites: !!omap
           - MAM01306m: -1
           - MAM02039m: -1
@@ -67889,7 +67899,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04596"
-      - name: ""
+      - name: "L-2-aminoadipate:2-oxoglutarate aminotransferase"
       - metabolites: !!omap
           - MAM00670c: -1
           - MAM01306c: 1
@@ -67906,7 +67916,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04597"
-      - name: ""
+      - name: "L-2-aminoadipate:2-oxoglutarate aminotransferase"
       - metabolites: !!omap
           - MAM00670m: -1
           - MAM01306m: 1
@@ -67923,7 +67933,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04599"
-      - name: ""
+      - name: "2-Oxoadipate:lipoamde 2-oxidoreductase(decarboxylating and acceptor-succinylating)"
       - metabolites: !!omap
           - MAM00670m: -1
           - MAM01596m: 1
@@ -67941,7 +67951,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04667"
-      - name: ""
+      - name: "N6-(L-1,3-Dicarboxypropyl)-L-lysine:NAD+ oxidoreductase"
       - metabolites: !!omap
           - MAM00631m: 1
           - MAM01974m: 1
@@ -67961,7 +67971,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04668"
-      - name: ""
+      - name: "N6-(L-1,3-Dicarboxypropyl)-L-lysine:NADP+ oxidoreductase"
       - metabolites: !!omap
           - MAM00631m: 1
           - MAM01974m: 1
@@ -67981,7 +67991,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04737"
-      - name: ""
+      - name: "L-2-aminoadipate-6-semialdehyde:NAD+ 6-oxidoreductase"
       - metabolites: !!omap
           - MAM00631c: -1
           - MAM02039c: 2
@@ -68000,7 +68010,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04739"
-      - name: ""
+      - name: "L-2-aminoadipate-6-semialdehyde:NAD+ 6-oxidoreductase"
       - metabolites: !!omap
           - MAM00631m: -1
           - MAM02039m: 2
@@ -68019,7 +68029,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04740"
-      - name: ""
+      - name: "(S)-2-amino-6-oxohexanoate hydro-lyase (spontaneous)"
       - metabolites: !!omap
           - MAM00556c: -1
           - MAM00631c: 1
@@ -68036,7 +68046,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR06415"
-      - name: ""
+      - name: "Glutaryl-CoA:dihydrolipoamide S-succinyltransferase"
       - metabolites: !!omap
           - MAM01597m: -1
           - MAM01701m: 1
@@ -68088,7 +68098,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR06976"
-      - name: ""
+      - name: "S-adenosyl-L-methionine:cytochrome-c-L-lysine N6-methyltransferase"
       - metabolites: !!omap
           - MAM00212c: 1
           - MAM00213c: -1
@@ -68106,7 +68116,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR06977"
-      - name: ""
+      - name: "S-adenosyl-L-methionine:cytochrome-c-L-lysine N6-methyltransferase"
       - metabolites: !!omap
           - MAM00211c: 1
           - MAM00212c: -1
@@ -68142,7 +68152,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR06979"
-      - name: ""
+      - name: "N6,N6,N6-Trimethyl-L-lysine,2-oxoglutarate:oxygen oxidoreductase (3-hydroxylating)"
       - metabolites: !!omap
           - MAM00789c: 1
           - MAM01306c: -1
@@ -68178,7 +68188,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR06982"
-      - name: ""
+      - name: "4-Trimethylammoniobutanoate,2-oxoglutarate:oxygen oxidoreductase (3-hydroxylating)"
       - metabolites: !!omap
           - MAM01306c: -1
           - MAM01596c: 1
@@ -68197,7 +68207,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR06983"
-      - name: ""
+      - name: "[procollagen]-L-lysine,2-oxoglutarate:oxygen oxidoreductase (5-hydroxylating)"
       - metabolites: !!omap
           - MAM00204c: -1
           - MAM01306c: -1
@@ -68216,7 +68226,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR06984"
-      - name: ""
+      - name: "UDP-alpha-D-galactose:procollagen-5-hydroxy-L-lysine D-galactosyltransferase"
       - metabolites: !!omap
           - MAM01036c: 1
           - MAM02039c: 1
@@ -68234,7 +68244,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR06985"
-      - name: ""
+      - name: "UDPglucose:5-(D-galactosyloxy)-L-lysine-procollagen D-glucosyltransferase"
       - metabolites: !!omap
           - MAM00232c: 1
           - MAM01036c: -1
@@ -68252,7 +68262,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR08017"
-      - name: ""
+      - name: "L-lysine:oxygen 2-oxidoreductase (deaminating)"
       - metabolites: !!omap
           - MAM01157x: 1
           - MAM02039x: 1
@@ -68288,7 +68298,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR08019"
-      - name: ""
+      - name: "L-pipecolate:NAD+ 2-oxidoreductase"
       - metabolites: !!omap
           - MAM01663x: -1
           - MAM02039x: -1
@@ -68342,7 +68352,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR08027"
-      - name: ""
+      - name: "S-adenosyl-L-methionine:cytochrome-c-L-lysine N6-methyltransferase"
       - metabolites: !!omap
           - MAM00211n: 1
           - MAM00212n: -1
@@ -68378,7 +68388,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03164"
-      - name: ""
+      - name: "(S)-3-hydroxybutanoyl-CoA hydro-lyase"
       - metabolites: !!omap
           - MAM00173m: 1
           - MAM01622m: -1
@@ -68394,7 +68404,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03166"
-      - name: ""
+      - name: "(S)-3-Hydroxybutanoyl-CoA:NAD+ oxidoreductase"
       - metabolites: !!omap
           - MAM00173m: -1
           - MAM01255m: 1
@@ -68412,7 +68422,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03885"
-      - name: ""
+      - name: "acetyl-CoA:acetyl-CoA C-acetyltransferase"
       - metabolites: !!omap
           - MAM01255m: -1
           - MAM01261m: 2
@@ -68462,7 +68472,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR08092"
-      - name: ""
+      - name: "3-Hydroxykynurenamine:oxygen oxidoreductase(deaminating)(flavin-containing)"
       - metabolites: !!omap
           - MAM00786c: -1
           - MAM00949c: 1
@@ -68481,7 +68491,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR08563"
-      - name: ""
+      - name: "Indole-3-acetaldehyde:NAD+ oxidoreductase"
       - metabolites: !!omap
           - MAM02039m: 2
           - MAM02040m: -1
@@ -68553,7 +68563,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03935"
-      - name: ""
+      - name: "S-(hydroxymethyl)glutathione formaldehyde-lyase (glutathione-forming)"
       - metabolites: !!omap
           - MAM01831c: -1
           - MAM02026c: -1
@@ -68569,7 +68579,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04681"
-      - name: ""
+      - name: "L-phenylalanine carboxy-lyase (phenylethylamine-forming)"
       - metabolites: !!omap
           - MAM01596c: 1
           - MAM02039c: -1
@@ -68586,7 +68596,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04682"
-      - name: ""
+      - name: "Phenethylamine:oxygen oxidoreductase (deaminating)"
       - metabolites: !!omap
           - MAM02039c: 1
           - MAM02040c: -1
@@ -68606,7 +68616,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04683"
-      - name: ""
+      - name: "Phenylacetaldehyde:NAD+ oxidoreductase"
       - metabolites: !!omap
           - MAM02039c: 2
           - MAM02040c: -1
@@ -68625,7 +68635,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04685"
-      - name: ""
+      - name: "Phenylacetaldehyde:NAD+ oxidoreductase"
       - metabolites: !!omap
           - MAM02039m: 2
           - MAM02040m: -1
@@ -68644,7 +68654,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04686"
-      - name: ""
+      - name: "Aldehyde:NADP+ oxidoreductase"
       - metabolites: !!omap
           - MAM02039c: -2
           - MAM02040c: 1
@@ -68663,7 +68673,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04687"
-      - name: ""
+      - name: "Aldehyde:NADP+ oxidoreductase"
       - metabolites: !!omap
           - MAM02039m: -2
           - MAM02040m: 1
@@ -68702,7 +68712,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04703"
-      - name: ""
+      - name: "Gentisate aldehyde:NAD+ oxidoreductase"
       - metabolites: !!omap
           - MAM00576c: 1
           - MAM01952c: -1
@@ -68740,7 +68750,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR06988"
-      - name: ""
+      - name: "iodide:hydrogen-peroxide oxidoreductase"
       - metabolites: !!omap
           - MAM02039c: -2
           - MAM02040c: 2
@@ -68776,7 +68786,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR07701"
-      - name: ""
+      - name: "NADPH:oxygen oxidoreductase"
       - metabolites: !!omap
           - MAM02039c: -1
           - MAM02041c: 1
@@ -68849,7 +68859,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR08537"
-      - name: ""
+      - name: "L-tyrosine,tetrahydrobiopterin:oxygen oxidoreductase(3-hydroxylating)"
       - metabolites: !!omap
           - MAM00965c: 1
           - MAM02354c: 1
@@ -68938,7 +68948,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03206"
-      - name: ""
+      - name: "acetyl-CoA:propanoyl-CoA 2-C-acetyltransferase"
       - metabolites: !!omap
           - MAM00662m: -1
           - MAM01261m: 1
@@ -68972,7 +68982,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03747"
-      - name: ""
+      - name: "L-Valine:2-oxoglutarate aminotransferase"
       - metabolites: !!omap
           - MAM00824c: 1
           - MAM01306c: -1
@@ -68989,7 +68999,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03744"
-      - name: ""
+      - name: "L-Valine:2-oxoglutarate aminotransferase"
       - metabolites: !!omap
           - MAM00824m: 1
           - MAM01306m: -1
@@ -69006,7 +69016,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03757"
-      - name: ""
+      - name: "3-Hydroxy-2-methylpropanoate:NAD+ oxidoreductase"
       - metabolites: !!omap
           - MAM00661m: 1
           - MAM00784m: -1
@@ -69043,7 +69053,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03777"
-      - name: ""
+      - name: "L-Leucine:2-oxoglutarate aminotransferase"
       - metabolites: !!omap
           - MAM00669c: 1
           - MAM01306c: -1
@@ -69060,7 +69070,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03778"
-      - name: ""
+      - name: "L-Leucine:2-oxoglutarate aminotransferase"
       - metabolites: !!omap
           - MAM00669m: 1
           - MAM01306m: -1
@@ -69077,7 +69087,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03795"
-      - name: ""
+      - name: "2-Methyl-3-oxopropanoate:NAD+ oxidoreductase (CoA-propanoylating)"
       - metabolites: !!omap
           - MAM00661m: -1
           - MAM01596m: 1
@@ -69096,7 +69106,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04797"
-      - name: ""
+      - name: "(S)-Methylmalonate semialdehyde:NAD+ oxidoreductase"
       - metabolites: !!omap
           - MAM00661c: -1
           - MAM02039c: 2
@@ -69115,7 +69125,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR06417"
-      - name: ""
+      - name: "2-methylpropanoyl-CoA:enzyme N6-(dihydrolipoyl)lysine S-(2-methylpropanoyl)transferase"
       - metabolites: !!omap
           - MAM01597m: -1
           - MAM01701m: 1
@@ -69132,7 +69142,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR06419"
-      - name: ""
+      - name: "(S)-3-Methyl-2-oxopentanoate:[dihydrolipoyllysine-residue (2-methylpropanoyl)transferase] lipoyllysine 2-oxidoreductase (decarboxylating, acceptor-2-methylpropanoylating)"
       - metabolites: !!omap
           - MAM00669m: -1
           - MAM01596m: 1
@@ -69150,7 +69160,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR06420"
-      - name: ""
+      - name: "(S)-2-methylbutanoyl-CoA:enzyme N6-(dihydrolipoyl)lysine S-(2-methylbutanoyl)transferase"
       - metabolites: !!omap
           - MAM00663m: 1
           - MAM01597m: -1
@@ -69167,7 +69177,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR06421"
-      - name: ""
+      - name: "4-methyl-2-oxopentanoate:[dihydrolipoyllysine-residue (2-methylpropanoyl)transferase] lipoyllysine 2-oxidoreductase (decarboxylating, acceptor-2-methylpropanoylating)"
       - metabolites: !!omap
           - MAM01013m: -1
           - MAM01596m: 1
@@ -69185,7 +69195,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR06422"
-      - name: ""
+      - name: "3-methylbutanoyl-CoA:enzyme N6-(dihydrolipoyl)lysine S-(3-methylbutanoyl)transferase"
       - metabolites: !!omap
           - MAM01597m: -1
           - MAM01701m: 1
@@ -69202,7 +69212,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR06923"
-      - name: ""
+      - name: "L-Leucine:2-oxoglutarate aminotransferase"
       - metabolites: !!omap
           - MAM01013c: 1
           - MAM01306c: -1
@@ -69219,7 +69229,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03765"
-      - name: ""
+      - name: "L-Leucine:2-oxoglutarate aminotransferase"
       - metabolites: !!omap
           - MAM01013m: 1
           - MAM01306m: -1
@@ -69292,7 +69302,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR08088"
-      - name: ""
+      - name: "L-3-amino-isobutanoate:2-oxoglutarate aminotransferase"
       - metabolites: !!omap
           - MAM00661m: -1
           - MAM01306m: 1
@@ -69327,7 +69337,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03940"
-      - name: ""
+      - name: "L-Phenylalanine,tetrahydrobiopterin:oxygen oxidoreductase (4-hydroxylating)"
       - metabolites: !!omap
           - MAM01698c: 1
           - MAM02040c: 1
@@ -69346,7 +69356,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04214"
-      - name: ""
+      - name: "L-tryptophan:oxygen 2,3-oxidoreductase (decyclizing)"
       - metabolites: !!omap
           - MAM02371c: 1
           - MAM02630c: -1
@@ -69362,7 +69372,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04220"
-      - name: ""
+      - name: "L-Kynurenine,NADPH:oxygen oxidoreductase (3-hydroxylating)"
       - metabolites: !!omap
           - MAM00788c: -1
           - MAM02039c: 1
@@ -69436,7 +69446,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04233"
-      - name: ""
+      - name: "2-Aminomuconate semialdehyde:NAD+ 6-oxidoreductase"
       - metabolites: !!omap
           - MAM00633c: -1
           - MAM00634c: 1
@@ -69474,7 +69484,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04242"
-      - name: ""
+      - name: "glutaryl-CoA:electron-transfer flavoprotein 2,3-oxidoreductase (decarboxylating)"
       - metabolites: !!omap
           - MAM01596m: 1
           - MAM01622m: 1
@@ -69493,7 +69503,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04243"
-      - name: ""
+      - name: "glutaryl-CoA:electron-transfer flavoprotein 2,3-oxidoreductase (decarboxylating)"
       - metabolites: !!omap
           - MAM01596m: 1
           - MAM01622m: 1
@@ -69512,7 +69522,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04244"
-      - name: ""
+      - name: "3-hydroxy-L-kynurenine:2-oxoglutarate aminotransferase"
       - metabolites: !!omap
           - MAM00788c: -1
           - MAM00924c: 1
@@ -69579,7 +69589,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR06707"
-      - name: ""
+      - name: "L-tryptophan decarboxy-lyase"
       - metabolites: !!omap
           - MAM01596c: 1
           - MAM02039c: -1
@@ -69664,7 +69674,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR06713"
-      - name: ""
+      - name: "Tryptamine:oxygen oxidoreductase(deaminating)"
       - metabolites: !!omap
           - MAM02039c: 1
           - MAM02040c: -1
@@ -69684,7 +69694,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR06714"
-      - name: ""
+      - name: "Indole-3-acetaldehyde:NAD+ oxidoreductase"
       - metabolites: !!omap
           - MAM02039c: 2
           - MAM02040c: -1
@@ -69703,7 +69713,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR06718"
-      - name: ""
+      - name: "5-Hydroxykynurenamine decarboxy-lyase"
       - metabolites: !!omap
           - MAM01105c: 1
           - MAM01106c: -1
@@ -69720,7 +69730,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR06719"
-      - name: ""
+      - name: "5-Hydroxykynurenamine:oxygen oxidoreductase(deaminating)(flavin-containing)"
       - metabolites: !!omap
           - MAM00947c: 1
           - MAM01105c: -1
@@ -69810,7 +69820,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR06725"
-      - name: ""
+      - name: "L-Phenylalanine:2-oxoglutarate aminotransferase"
       - metabolites: !!omap
           - MAM01306c: -1
           - MAM01974c: 1
@@ -69827,7 +69837,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR06726"
-      - name: ""
+      - name: "Phenylpyruvate:oxygen oxidoreductase (hydroxylating,decarboxylating)"
       - metabolites: !!omap
           - MAM00654c: 1
           - MAM01596c: 1
@@ -69844,7 +69854,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR06728"
-      - name: ""
+      - name: "L-Tyrosine,tetrahydrobiopterin:oxygen oxidoreductase (3-hydroxylating)"
       - metabolites: !!omap
           - MAM01698c: 1
           - MAM02040c: 1
@@ -69863,7 +69873,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR06731"
-      - name: ""
+      - name: "3,4-Dihydroxy-L-phenylalanine carboxy-lyase"
       - metabolites: !!omap
           - MAM01596c: 1
           - MAM01736c: 1
@@ -69949,7 +69959,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR06741"
-      - name: ""
+      - name: "dopamine,ascorbate:oxygen oxidoreductase (beta-hydroxylating)"
       - metabolites: !!omap
           - MAM01368c: -1
           - MAM01655c: 1
@@ -70003,7 +70013,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR06745"
-      - name: ""
+      - name: "4-[(1R)-1-Hydroxy-2-(methylamino)ethyl]-1,2-benzenediol:oxygen oxidoreductase(deaminating)(flavin-containing)"
       - metabolites: !!omap
           - MAM00726c: 1
           - MAM01290c: -1
@@ -70022,7 +70032,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR06747"
-      - name: ""
+      - name: "L-Metanephrine:oxygen oxidoreductase (deaminating) (flavin-containing)"
       - metabolites: !!omap
           - MAM00820c: 1
           - MAM02040c: -1
@@ -70041,7 +70051,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR06748"
-      - name: ""
+      - name: "3-Methoxy-4-hydroxyphenylglycolaldehyde:NAD+ oxidoreductase"
       - metabolites: !!omap
           - MAM00820c: -1
           - MAM02039c: 2
@@ -70060,7 +70070,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR06749"
-      - name: ""
+      - name: "3-Methoxy-4-hydroxyphenylglycolaldehyde:NADP+ oxidoreductase"
       - metabolites: !!omap
           - MAM00820c: -1
           - MAM02039c: 2
@@ -70079,7 +70089,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR06751"
-      - name: ""
+      - name: "L-Normetanephrine:oxygen oxidoreductase (deaminating) (copper-containing)"
       - metabolites: !!omap
           - MAM00820c: 1
           - MAM02039c: 1
@@ -70099,7 +70109,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR06752"
-      - name: ""
+      - name: "4-[(1R)-2-Amino-1-hydroxyethyl]-1,2-benzenediol:oxygen oxidoreductase(deaminating)(flavin-containing)"
       - metabolites: !!omap
           - MAM00726c: 1
           - MAM02039c: 1
@@ -70119,7 +70129,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR06753"
-      - name: ""
+      - name: "3,4-Dihydroxymandelaldehyde:NAD+ oxidoreductase"
       - metabolites: !!omap
           - MAM00726c: -1
           - MAM00727c: 1
@@ -70138,7 +70148,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR06754"
-      - name: ""
+      - name: "3,4-Dihydroxymandelaldehyde:NADP+ oxidoreductase"
       - metabolites: !!omap
           - MAM00726c: -1
           - MAM00727c: 1
@@ -70157,7 +70167,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR06756"
-      - name: ""
+      - name: "3,4-dihydroxyphenylethyleneglycol:NAD+ oxidoreductase"
       - metabolites: !!omap
           - MAM00726c: -1
           - MAM00730c: 1
@@ -70175,7 +70185,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR06758"
-      - name: ""
+      - name: "4-(2-aminoethyl)-1,2-benzenediol:oxygen oxidoreductase(deaminating)(flavin-containing)"
       - metabolites: !!omap
           - MAM00728c: 1
           - MAM01736c: -1
@@ -70195,7 +70205,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR06759"
-      - name: ""
+      - name: "3,4-Dihydroxyphenylacetaldehyde hydro-lyase (adding dopamine)"
       - metabolites: !!omap
           - MAM00728c: -1
           - MAM01736c: -1
@@ -70212,7 +70222,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR06760"
-      - name: ""
+      - name: "3,4-dihydroxyphenylacetaldehyde:NAD+ oxidoreductase"
       - metabolites: !!omap
           - MAM00728c: -1
           - MAM00729c: 1
@@ -70231,7 +70241,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR06761"
-      - name: ""
+      - name: "3,4-Dihydroxyphenylacetaldehyde:NADP+ oxidoreductase"
       - metabolites: !!omap
           - MAM00728c: -1
           - MAM00729c: 1
@@ -70250,7 +70260,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR06764"
-      - name: ""
+      - name: "3-Methoxytyramine:oxygen oxidoreductase (deaminating) (copper-containing)"
       - metabolites: !!omap
           - MAM00818c: 1
           - MAM00821c: -1
@@ -70287,7 +70297,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR06766"
-      - name: ""
+      - name: "3-Methoxy-4-hydroxyphenylacetaldehyde:NAD+ oxidoreductase"
       - metabolites: !!omap
           - MAM00818c: -1
           - MAM02039c: 2
@@ -70306,7 +70316,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR06767"
-      - name: ""
+      - name: "3-Methoxy-4-hydroxyphenylacetaldehyde:NADP+ oxidoreductase"
       - metabolites: !!omap
           - MAM00818c: -1
           - MAM02039c: 2
@@ -70325,7 +70335,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR06768"
-      - name: ""
+      - name: "L-tyrosine:2-oxoglutarate aminotransferase"
       - metabolites: !!omap
           - MAM01005c: 1
           - MAM01306c: -1
@@ -70342,7 +70352,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR06770"
-      - name: ""
+      - name: "L-Tyrosine:oxygen oxidoreductase (deaminating)"
       - metabolites: !!omap
           - MAM01005c: 1
           - MAM02039c: 1
@@ -70362,7 +70372,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR06772"
-      - name: ""
+      - name: "4-Hydroxyphenylpyruvate:oxygen oxidoreductase (hydroxylating,decarboxylating)"
       - metabolites: !!omap
           - MAM01005c: -1
           - MAM01596c: 1
@@ -70379,7 +70389,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR06774"
-      - name: ""
+      - name: "Homogentisate:oxygen 1,2-oxidoreductase (decyclizing)"
       - metabolites: !!omap
           - MAM01010c: 1
           - MAM02039c: 1
@@ -70396,7 +70406,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR06776"
-      - name: ""
+      - name: "4-Maleylacetoacetate cis-trans-isomerase"
       - metabolites: !!omap
           - MAM01010c: -1
           - MAM01863c: 1
@@ -70411,7 +70421,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR06778"
-      - name: ""
+      - name: "4-fumarylacetoacetate fumarylhydrolase"
       - metabolites: !!omap
           - MAM01253c: 1
           - MAM01862c: 1
@@ -70447,7 +70457,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR06783"
-      - name: ""
+      - name: "3-(4-hydroxyphenyl)lactate hydro-lyase (4-coumarate-forming)"
       - metabolites: !!omap
           - MAM00981c: 1
           - MAM01004c: -1
@@ -70463,7 +70473,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR06784"
-      - name: ""
+      - name: "4-Coumarate:CoA ligase (AMP-forming)"
       - metabolites: !!omap
           - MAM00981c: -1
           - MAM00982c: 1
@@ -70503,7 +70513,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR06786"
-      - name: ""
+      - name: "4-Hydroxybenzoyl-CoA hydrolase"
       - metabolites: !!omap
           - MAM00995c: 1
           - MAM00996c: -1
@@ -70521,7 +70531,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR06787"
-      - name: ""
+      - name: "L-tyrosine carboxy-lyase (tyramine-forming)"
       - metabolites: !!omap
           - MAM01596c: 1
           - MAM02039c: -1
@@ -70538,7 +70548,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR06789"
-      - name: ""
+      - name: "tyramine:oxygen oxidoreductase(deaminating)(flavin-containing)"
       - metabolites: !!omap
           - MAM01002c: 1
           - MAM02039c: 1
@@ -70558,7 +70568,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR06790"
-      - name: ""
+      - name: "4-hydroxyphenylacetaldehyde:NAD+ oxidoreductase"
       - metabolites: !!omap
           - MAM01002c: -1
           - MAM01003c: 1
@@ -70577,7 +70587,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR06791"
-      - name: ""
+      - name: "4-Hydroxyphenylacetaldehyde:NADP+ oxidoreductase"
       - metabolites: !!omap
           - MAM01002c: -1
           - MAM01003c: 1
@@ -71214,7 +71224,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR07628"
-      - name: ""
+      - name: "L-phenylalanine:oxygen 2-oxidoreductase (decarboxylating)"
       - metabolites: !!omap
           - MAM00673c: 1
           - MAM01596c: 1
@@ -71232,7 +71242,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR07756"
-      - name: ""
+      - name: "2-phenylacetamide amidohydrolase"
       - metabolites: !!omap
           - MAM00673c: -1
           - MAM02039c: 1
@@ -71250,7 +71260,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR08539"
-      - name: ""
+      - name: "L-phenylalanine,tetrahydrobiopterin:oxygen oxidoreductase(4-hydroxylating)"
       - metabolites: !!omap
           - MAM00965c: 1
           - MAM02630c: -1
@@ -71268,7 +71278,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR08794"
-      - name: ""
+      - name: "Phenylacetate:CoA ligase"
       - metabolites: !!omap
           - MAM01334c: 1
           - MAM01371c: -1
@@ -71287,7 +71297,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR08795"
-      - name: ""
+      - name: "Phenylacetyl-CoA:L-glutamine alpha-N-phenylacetyltransferase"
       - metabolites: !!omap
           - MAM01597c: 1
           - MAM01975c: -1
@@ -71304,7 +71314,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR08796"
-      - name: ""
+      - name: "phenylacetyl-CoA:glycine N-phenylacetyltransferase"
       - metabolites: !!omap
           - MAM01597c: 1
           - MAM01986c: -1
@@ -71322,7 +71332,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03875"
-      - name: ""
+      - name: "ATP:L-methionine S-adenosyltransferase"
       - metabolites: !!omap
           - MAM01371c: -1
           - MAM02040c: -1
@@ -71341,7 +71351,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03877"
-      - name: ""
+      - name: "S-Adenosyl-L-homocysteine hydrolase"
       - metabolites: !!omap
           - MAM01280c: 1
           - MAM02040c: -1
@@ -71358,7 +71368,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03879"
-      - name: ""
+      - name: "L-serine hydro-lyase (adding homocysteine"
       - metabolites: !!omap
           - MAM02040c: 1
           - MAM02133c: -1
@@ -71375,7 +71385,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03881"
-      - name: ""
+      - name: "L-cystathionine cysteine-lyase (deaminating"
       - metabolites: !!omap
           - MAM00671c: 1
           - MAM01628c: 1
@@ -71394,7 +71404,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03912"
-      - name: ""
+      - name: "L-Cysteine:2-oxoglutarate aminotransferase"
       - metabolites: !!omap
           - MAM01306c: -1
           - MAM01628c: -1
@@ -71411,7 +71421,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03917"
-      - name: ""
+      - name: "5-methyltetrahydrofolate:L-homocysteine S-methyltransferase"
       - metabolites: !!omap
           - MAM01115c: -1
           - MAM02039c: 1
@@ -71464,7 +71474,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03996"
-      - name: ""
+      - name: "L-cysteine:NAD+ oxidoreductase"
       - metabolites: !!omap
           - MAM01628c: 2
           - MAM01629c: -1
@@ -71482,7 +71492,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04072"
-      - name: ""
+      - name: "S-Adenosyl-L-methionine:DNA (cytosine-5-)-methyltransferase"
       - metabolites: !!omap
           - MAM01721c: -1
           - MAM01722c: 1
@@ -71500,7 +71510,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04189"
-      - name: ""
+      - name: "Sulfite:oxygen oxidoreductase"
       - metabolites: !!omap
           - MAM02040m: -1
           - MAM02041m: 1
@@ -71518,7 +71528,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04302"
-      - name: ""
+      - name: "L-cysteine hydrogen-sulfide-lyase (deaminating"
       - metabolites: !!omap
           - MAM01628c: -1
           - MAM02039c: 2
@@ -71537,7 +71547,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04323"
-      - name: ""
+      - name: "L-serine hydro-lyase (adding hydrogen sulfide, L-cysteine-forming)"
       - metabolites: !!omap
           - MAM01628c: 1
           - MAM02039c: -1
@@ -71555,7 +71565,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR05385"
-      - name: ""
+      - name: "5-methylthio-5-deoxy-D-ribose-1-phosphate ketol-isomerase"
       - metabolites: !!omap
           - MAM02481c: -1
           - MAM02910c: 1
@@ -71570,7 +71580,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR05386"
-      - name: ""
+      - name: "S-methyl-5-thio-D-ribulose-1-phosphate hydro-lyase"
       - metabolites: !!omap
           - MAM00572c: 1
           - MAM02040c: 1
@@ -71603,7 +71613,7 @@
       - confidence_score: 4
     - !!omap
       - id: "MAR05388"
-      - name: ""
+      - name: "1,2-dihydroxy-5-(methylthio)pent-1-en-3-one:oxygen oxidoreductase (formate- and CO-forming)"
       - metabolites: !!omap
           - MAM00245c: -1
           - MAM00684c: 1
@@ -71640,7 +71650,7 @@
       - confidence_score: 4
     - !!omap
       - id: "MAR05390"
-      - name: ""
+      - name: "L-Methionine:oxygen oxidoreductase (deaminating)"
       - metabolites: !!omap
           - MAM01016c: 1
           - MAM02039c: 1
@@ -71677,7 +71687,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR06519"
-      - name: ""
+      - name: "3-Mercaptolactate:NAD+ oxidoreductase"
       - metabolites: !!omap
           - MAM00815c: -1
           - MAM02039c: 1
@@ -71713,7 +71723,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR08066"
-      - name: ""
+      - name: "L-cysteate:2-oxoglutarate aminotransferase"
       - metabolites: !!omap
           - MAM00920c: -1
           - MAM01306c: 1
@@ -71730,7 +71740,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR08067"
-      - name: ""
+      - name: "L-cysteate:2-oxoglutarate aminotransferase"
       - metabolites: !!omap
           - MAM00920m: -1
           - MAM01306m: 1
@@ -71747,7 +71757,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR08068"
-      - name: ""
+      - name: "(R)-2-hydroxyacid:NAD+ oxidoreductase"
       - metabolites: !!omap
           - MAM00179c: -1
           - MAM00920c: 1
@@ -71765,7 +71775,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR08069"
-      - name: ""
+      - name: "(R)-2-hydroxyacid:NAD+ oxidoreductase"
       - metabolites: !!omap
           - MAM00179m: -1
           - MAM00920m: 1
@@ -71783,7 +71793,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR08641"
-      - name: ""
+      - name: "S-adenosyl-L-methionine:DNA (cytosine-5-)-methyltransferase"
       - metabolites: !!omap
           - MAM01721n: -1
           - MAM01722n: 1
@@ -71818,7 +71828,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR08683"
-      - name: ""
+      - name: "L-cystine thiocysteine-lyase (deaminating"
       - metabolites: !!omap
           - MAM01629c: -1
           - MAM02039c: 1
@@ -71837,7 +71847,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR08684"
-      - name: ""
+      - name: "L-Cysteine:2-oxoglutarate aminotransferase"
       - metabolites: !!omap
           - MAM01306m: -1
           - MAM01628m: -1
@@ -71873,7 +71883,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03889"
-      - name: ""
+      - name: "5-oxo-L-proline amidohydrolase (ATP-hydrolysing)"
       - metabolites: !!omap
           - MAM01127c: -1
           - MAM01285c: 1
@@ -71893,7 +71903,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03933"
-      - name: ""
+      - name: "S-(hydroxymethyl)glutathione dehydrogenase"
       - metabolites: !!omap
           - MAM01837c: -1
           - MAM02039c: -1
@@ -71911,7 +71921,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03937"
-      - name: ""
+      - name: "S-Formylglutathione hydrolase"
       - metabolites: !!omap
           - MAM01833c: 1
           - MAM01837c: -1
@@ -71929,7 +71939,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04116"
-      - name: ""
+      - name: "glutathione:hydrogen-peroxide oxidoreductase"
       - metabolites: !!omap
           - MAM02026c: -2
           - MAM02027c: 1
@@ -71946,7 +71956,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04120"
-      - name: ""
+      - name: "glutathione:hydrogen-peroxide oxidoreductase"
       - metabolites: !!omap
           - MAM02026e: -2
           - MAM02027e: 1
@@ -71963,7 +71973,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04121"
-      - name: ""
+      - name: "glutathione:hydrogen-peroxide oxidoreductase"
       - metabolites: !!omap
           - MAM02026m: -2
           - MAM02027m: 1
@@ -71980,7 +71990,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04175"
-      - name: ""
+      - name: "glutathione gamma-glutamylaminopeptidase"
       - metabolites: !!omap
           - MAM01626c: 1
           - MAM01974c: 1
@@ -71997,7 +72007,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04176"
-      - name: ""
+      - name: "glutathione gamma-glutamylaminopeptidase"
       - metabolites: !!omap
           - MAM01626e: 1
           - MAM01974e: 1
@@ -72014,7 +72024,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04324"
-      - name: ""
+      - name: "L-glutamate:L-cysteine gamma-ligase (ADP-forming)"
       - metabolites: !!omap
           - MAM01285c: 1
           - MAM01371c: -1
@@ -72034,7 +72044,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04326"
-      - name: ""
+      - name: "gamma-L-glutamyl-L-cysteine:glycine ligase (ADP-forming)"
       - metabolites: !!omap
           - MAM01285c: 1
           - MAM01371c: -1
@@ -72054,7 +72064,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04328"
-      - name: ""
+      - name: "L-cysteinylglycine dipeptidase"
       - metabolites: !!omap
           - MAM01626c: -1
           - MAM01628c: 1
@@ -72071,7 +72081,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04329"
-      - name: ""
+      - name: "L-cysteinylglycine dipeptidase"
       - metabolites: !!omap
           - MAM01626e: -1
           - MAM01628e: 1
@@ -72088,7 +72098,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04708"
-      - name: ""
+      - name: "gamma-L-glutamyl-L-cysteine gamma-glutamyl cyclotransferase (5-oxoproline-forming)"
       - metabolites: !!omap
           - MAM01127c: 1
           - MAM01628c: 1
@@ -72157,7 +72167,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04078"
-      - name: ""
+      - name: "spermidine:oxygen oxidoreductase (spermidine-forming)"
       - metabolites: !!omap
           - MAM00760c: 1
           - MAM02040c: -1
@@ -72195,7 +72205,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04174"
-      - name: ""
+      - name: "L-aspartate 1-carboxy-lyase (beta-alanine-forming)"
       - metabolites: !!omap
           - MAM01370c: -1
           - MAM01383c: 1
@@ -72212,7 +72222,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04330"
-      - name: ""
+      - name: "beta-alanine:2-oxoglutarate aminotransferase"
       - metabolites: !!omap
           - MAM00900m: -1
           - MAM01306m: 1
@@ -72229,7 +72239,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04347"
-      - name: ""
+      - name: "3-ureidopropanoate amidohydrolase"
       - metabolites: !!omap
           - MAM00923c: -1
           - MAM01383c: 1
@@ -72248,7 +72258,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04688"
-      - name: ""
+      - name: "4-aminobutanal:NAD+ 1-oxidoreductase"
       - metabolites: !!omap
           - MAM00969m: -1
           - MAM00970m: 1
@@ -72267,7 +72277,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04735"
-      - name: ""
+      - name: "3-Hydroxypropionyl-CoA hydro-lyase"
       - metabolites: !!omap
           - MAM00799m: 1
           - MAM01265m: -1
@@ -72283,7 +72293,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR07991"
-      - name: ""
+      - name: "spermidine:(acceptor) oxidoreductase"
       - metabolites: !!omap
           - MAM00248c: 1
           - MAM00969c: 1
@@ -72321,7 +72331,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR07128"
-      - name: ""
+      - name: "ATP:selenate adenylyltransferase"
       - metabolites: !!omap
           - MAM01284c: 1
           - MAM01371c: -1
@@ -72339,7 +72349,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR07129"
-      - name: ""
+      - name: "ATP:adenylylsulfate 3'-phosphotransferase"
       - metabolites: !!omap
           - MAM00912c: 1
           - MAM01284c: -1
@@ -72376,7 +72386,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR07131"
-      - name: ""
+      - name: "hydrogen selenide:NADP+ oxidoreductase"
       - metabolites: !!omap
           - MAM02039c: -4
           - MAM02040c: 3
@@ -72395,7 +72405,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR07132"
-      - name: ""
+      - name: "ATP:selenide, water phosphotransferase"
       - metabolites: !!omap
           - MAM01334c: 1
           - MAM01371c: -1
@@ -72414,7 +72424,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR07134"
-      - name: ""
+      - name: "Selenocystathionine Lysteine-lyase (deaminating)"
       - metabolites: !!omap
           - MAM00671c: 1
           - MAM02039c: 1
@@ -72433,7 +72443,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR07135"
-      - name: ""
+      - name: "L-Serine hydro-lyase (adding homocysteine)"
       - metabolites: !!omap
           - MAM02040c: -1
           - MAM02888c: -1
@@ -72450,7 +72460,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR07136"
-      - name: ""
+      - name: "Se-Adenosylselenohomocysteine hydrolase"
       - metabolites: !!omap
           - MAM01280c: 1
           - MAM02040c: -1
@@ -72467,7 +72477,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR07137"
-      - name: ""
+      - name: "Selenomethionine methanethiol-lyase (deaminating)"
       - metabolites: !!omap
           - MAM00671c: 1
           - MAM02039c: 1
@@ -72506,7 +72516,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR07139"
-      - name: ""
+      - name: "ATP:L-selenomethione S-adenosyltransferase"
       - metabolites: !!omap
           - MAM01371c: -1
           - MAM02040c: -1
@@ -72525,7 +72535,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR07140"
-      - name: ""
+      - name: "S-Adenosyl-L-methionine:thiol S-methyltransferase"
       - metabolites: !!omap
           - MAM02039c: -1
           - MAM02871c: -1
@@ -72543,7 +72553,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR07620"
-      - name: ""
+      - name: "Selenomethionine:tRNAMet ligase (AMP-forming)"
       - metabolites: !!omap
           - MAM01334c: 1
           - MAM01371c: -1
@@ -72562,7 +72572,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR07647"
-      - name: ""
+      - name: "D-alanine:oxygen oxidoreductase (deaminating)"
       - metabolites: !!omap
           - MAM01638x: -1
           - MAM02039x: 1
@@ -72600,7 +72610,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR08689"
-      - name: ""
+      - name: "D-Arginine:oxygen oxidoreductase (deaminating)"
       - metabolites: !!omap
           - MAM01101x: 1
           - MAM01640x: -1
@@ -72620,7 +72630,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR08690"
-      - name: ""
+      - name: "D-Ornithine:oxygen oxidoreductase (deaminating)"
       - metabolites: !!omap
           - MAM01073x: 1
           - MAM01740x: -1
@@ -72640,7 +72650,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03748"
-      - name: ""
+      - name: "3-methyl-2-oxobutanoate:NAD+ oxidoreductase (CoA-mehtylpropanoylating)"
       - metabolites: !!omap
           - MAM00824m: -1
           - MAM01596m: 1
@@ -72676,7 +72686,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03753"
-      - name: ""
+      - name: "(S)-3-Hydroxyisobutyryl-CoA hydro-lyase"
       - metabolites: !!omap
           - MAM00785m: 1
           - MAM02040m: -1
@@ -72692,7 +72702,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03755"
-      - name: ""
+      - name: "3-Hydroxy-2-methylpropanoyl-CoA hydrolase"
       - metabolites: !!omap
           - MAM00784m: 1
           - MAM00785m: -1
@@ -72710,7 +72720,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03759"
-      - name: ""
+      - name: "(S)-Methylmalonate semialdehyde:NAD+ oxidoreductase"
       - metabolites: !!omap
           - MAM00661m: -1
           - MAM02039m: 2
@@ -72729,7 +72739,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03763"
-      - name: ""
+      - name: "(S)-Methylmalonyl-CoA hydrolase"
       - metabolites: !!omap
           - MAM00166m: 1
           - MAM01597m: -1
@@ -72747,7 +72757,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03767"
-      - name: ""
+      - name: "4-methyl-2-oxopentanoate:NAD+ oxidoreductase (CoA-mehtylpropanoylating)"
       - metabolites: !!omap
           - MAM01013m: -1
           - MAM01596m: 1
@@ -72766,7 +72776,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03769"
-      - name: ""
+      - name: "3-methylbutanoyl-CoA:electron-transfer flavoprotein 2,3-oxidoreductase"
       - metabolites: !!omap
           - MAM00826m: -1
           - MAM02189m: 1
@@ -72783,7 +72793,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03773"
-      - name: ""
+      - name: "3-Methylcrotonoyl-CoA:carbon-dioxide ligase (ADP-forming)"
       - metabolites: !!omap
           - MAM00826m: -1
           - MAM00827m: 1
@@ -72803,7 +72813,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03775"
-      - name: ""
+      - name: "(S)-3-Hydroxy-3-methylglutaryl-CoA hydro-lyase (trans-3-methylglutaconyl-CoA-forming)"
       - metabolites: !!omap
           - MAM00827m: -1
           - MAM02040m: -1
@@ -72819,7 +72829,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03780"
-      - name: ""
+      - name: "(S)-3-methyl-2-oxopentanoate:NAD+ 2-oxidoreductase (CoA-methylbutanoylating)"
       - metabolites: !!omap
           - MAM00663m: 1
           - MAM00669m: -1
@@ -72838,7 +72848,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03783"
-      - name: ""
+      - name: "(S)-2-methylbutanoyl-CoA:acceptor 2,3-oxidoreductase"
       - metabolites: !!omap
           - MAM00663m: -1
           - MAM02999m: 1
@@ -72855,7 +72865,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03785"
-      - name: ""
+      - name: "(2S,3S)-3-Hydroxy-2-methylbutanoyl-CoA hydro-liase"
       - metabolites: !!omap
           - MAM00171m: 1
           - MAM02040m: -1
@@ -72871,7 +72881,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03790"
-      - name: ""
+      - name: "(S)-Methylmalonate semialdehyde:oxygen oxidoreductase"
       - metabolites: !!omap
           - MAM00661c: -1
           - MAM02039c: 1
@@ -72907,7 +72917,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03796"
-      - name: ""
+      - name: "Propionyladenylate:CoA propionyltransferase"
       - metabolites: !!omap
           - MAM01334m: -1
           - MAM01597m: 1
@@ -72925,7 +72935,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03823"
-      - name: ""
+      - name: "(2S,3S)-3-hydroxy-2-methylbutanoyl-CoA:NAD+ oxidoreductase"
       - metabolites: !!omap
           - MAM00171m: -1
           - MAM00662m: 1
@@ -72943,7 +72953,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR06416"
-      - name: ""
+      - name: "3-methyl-2-oxobutanoate:[dihydrolipoyllysine-residue (2-methylpropanoyl)transferase] lipoyllysine 2-oxidoreductase (decarboxylating, acceptor-2-methylpropanoylating)"
       - metabolites: !!omap
           - MAM00824m: -1
           - MAM01596m: 1
@@ -72977,7 +72987,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03988"
-      - name: ""
+      - name: "chitobiose N-acetylglucosaminohydrolase"
       - metabolites: !!omap
           - MAM01439l: -1
           - MAM02040l: -1
@@ -72993,7 +73003,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04124"
-      - name: ""
+      - name: "UDP-D-glucuronate carboxy-lyase (UDP-D-xylose-forming)"
       - metabolites: !!omap
           - MAM01596r: 1
           - MAM02039r: -1
@@ -73028,7 +73038,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04159"
-      - name: ""
+      - name: "UDP-N-acetyl-D-glucosamine 4-epimerase"
       - metabolites: !!omap
           - MAM03110c: -1
           - MAM03111c: 1
@@ -73043,7 +73053,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04299"
-      - name: ""
+      - name: "D-glucosamine-6-phosphate aminohydrolase (ketol isomerizing)"
       - metabolites: !!omap
           - MAM01845c: 1
           - MAM01963c: -1
@@ -73061,7 +73071,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04300"
-      - name: ""
+      - name: "L-glutamine:D-fructose-6-phosphate isomerase (deaminating)"
       - metabolites: !!omap
           - MAM01845c: -1
           - MAM01963c: 1
@@ -73078,7 +73088,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04494"
-      - name: ""
+      - name: "ATP:D-glucosamine 6-phosphotransferase"
       - metabolites: !!omap
           - MAM01285c: 1
           - MAM01371c: -1
@@ -73096,7 +73106,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04524"
-      - name: ""
+      - name: "ATP:N-acetyl-D-glucosamine 6-phosphotransferase"
       - metabolites: !!omap
           - MAM01285c: 1
           - MAM01371c: -1
@@ -73114,7 +73124,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04529"
-      - name: ""
+      - name: "phosphoenolpyruvate:N-acetyl-D-mannosamine-6-phosphate C-(1-carboxyvinyl)transferase (phosphate-hydrolysing, 2-carboxy-2-oxoethyl-forming)"
       - metabolites: !!omap
           - MAM02040c: -1
           - MAM02539c: -1
@@ -73132,7 +73142,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04530"
-      - name: ""
+      - name: "N-Acetylneuraminate 9-phosphate phosphohydrolase"
       - metabolites: !!omap
           - MAM02040c: -1
           - MAM02543c: 1
@@ -73149,7 +73159,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04531"
-      - name: ""
+      - name: "N-acetylneuraminate,ferrocytochrome-b5:oxygen oxidoreductase (N-acetyl-hydroxylating)"
       - metabolites: !!omap
           - MAM02039c: -1
           - MAM02040c: 1
@@ -73169,7 +73179,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04532"
-      - name: ""
+      - name: "CTP:N-glycoloylneuraminate cytidylyltransferase"
       - metabolites: !!omap
           - MAM01593c: -1
           - MAM01623c: 1
@@ -73186,7 +73196,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04533"
-      - name: ""
+      - name: "CMP-N-acetylneuraminate,ferrocytochrome-b5:oxygen oxidoreductase (N-acetyl-hydroxylating)"
       - metabolites: !!omap
           - MAM01592c: 1
           - MAM01593c: -1
@@ -73226,7 +73236,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04536"
-      - name: ""
+      - name: "CTP:N-acetylneuraminate cytidylyltransferase"
       - metabolites: !!omap
           - MAM01592n: -1
           - MAM01623n: 1
@@ -73243,7 +73253,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04628"
-      - name: ""
+      - name: "acetyl-CoA:D-glucosamine-6-phosphate N-acetyltransferase"
       - metabolites: !!omap
           - MAM01261c: -1
           - MAM01597c: 1
@@ -73261,7 +73271,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04629"
-      - name: ""
+      - name: "N-Acetyl-D-glucosamine-6-phosphate amidohydrolase"
       - metabolites: !!omap
           - MAM01252c: 1
           - MAM01963c: 1
@@ -73293,7 +73303,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR07696"
-      - name: ""
+      - name: "dTTP:alpha-D-glucose-1-phosphate thymidylyltransferase"
       - metabolites: !!omap
           - MAM01751c: 1
           - MAM01753c: -1
@@ -73311,7 +73321,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR07698"
-      - name: ""
+      - name: "dTDPglucose 4-epimerase"
       - metabolites: !!omap
           - MAM01750c: -1
           - MAM01751c: 1
@@ -73362,7 +73372,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR08368"
-      - name: ""
+      - name: "UTP:N-acetyl-alpha-D-galactosamine-1-phosphate uridylyltransferase"
       - metabolites: !!omap
           - MAM02039c: -1
           - MAM02526c: -1
@@ -73415,7 +73425,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR08375"
-      - name: ""
+      - name: "chitobiose N-acetylglucosaminohydrolase"
       - metabolites: !!omap
           - MAM01438c: -1
           - MAM02040c: -1
@@ -73431,7 +73441,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR08376"
-      - name: ""
+      - name: "chitobiose N-acetylglucosaminohydrolase"
       - metabolites: !!omap
           - MAM01438e: -1
           - MAM02040e: -1
@@ -73447,7 +73457,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR08377"
-      - name: ""
+      - name: "CTP:N-acetylneuraminate cytidylyltransferase"
       - metabolites: !!omap
           - MAM01592c: 1
           - MAM01623c: -1
@@ -73464,7 +73474,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR08672"
-      - name: ""
+      - name: "UDP-D-glucuronate carboxy-lyase (UDP-D-xylose-forming)"
       - metabolites: !!omap
           - MAM01596g: 1
           - MAM02039g: -1
@@ -73481,7 +73491,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR08674"
-      - name: ""
+      - name: "dTDP-4-dehydro-6-deoxy-alpha-D-glucose 3,5-epimerase"
       - metabolites: !!omap
           - MAM00946c: -1
           - MAM01748c: 1
@@ -73496,7 +73506,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR08675"
-      - name: ""
+      - name: "dTDP-beta-L-rhamnose:NADP+ 4-oxidoreductase"
       - metabolites: !!omap
           - MAM01748c: -1
           - MAM01749c: 1
@@ -73514,7 +73524,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR05130"
-      - name: ""
+      - name: "L-Tyrosine:tRNA(Tyr) ligase (AMP-forming)"
       - metabolites: !!omap
           - MAM01334c: 1
           - MAM01371c: -1
@@ -73533,7 +73543,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR05131"
-      - name: ""
+      - name: "L-Alanine:tRNA(Ala) ligase (AMP-forming)"
       - metabolites: !!omap
           - MAM01307c: -1
           - MAM01334c: 1
@@ -73552,7 +73562,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR05132"
-      - name: ""
+      - name: "L-Arginine:tRNA(Arg) ligase (AMP-forming)"
       - metabolites: !!omap
           - MAM01334c: 1
           - MAM01365c: -1
@@ -73571,7 +73581,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR05133"
-      - name: ""
+      - name: "L-Asparagine:tRNA(Asn) ligase (AMP-forming)"
       - metabolites: !!omap
           - MAM01334c: 1
           - MAM01369c: -1
@@ -73590,7 +73600,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR05134"
-      - name: ""
+      - name: "L-Aspartate:tRNA(Asp) ligase (AMP-forming)"
       - metabolites: !!omap
           - MAM01334c: 1
           - MAM01370c: -1
@@ -73609,7 +73619,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR05135"
-      - name: ""
+      - name: "L-Cysteine:tRNA(Cys) ligase (AMP-forming)"
       - metabolites: !!omap
           - MAM01334c: 1
           - MAM01371c: -1
@@ -73628,7 +73638,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR05136"
-      - name: ""
+      - name: "L-Glutamine:tRNA(Gln) ligase (AMP-forming)"
       - metabolites: !!omap
           - MAM01334c: 1
           - MAM01371c: -1
@@ -73647,7 +73657,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR05137"
-      - name: ""
+      - name: "L-glutamate:tRNA(Glu) ligase (AMP-forming)"
       - metabolites: !!omap
           - MAM01334c: 1
           - MAM01371c: -1
@@ -73666,7 +73676,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR05138"
-      - name: ""
+      - name: "glycine:tRNA(Gly) ligase (AMP-forming)"
       - metabolites: !!omap
           - MAM01334c: 1
           - MAM01371c: -1
@@ -73685,7 +73695,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR05139"
-      - name: ""
+      - name: "L-Histidine:tRNA(His) ligase (AMP-forming)"
       - metabolites: !!omap
           - MAM01334c: 1
           - MAM01371c: -1
@@ -73704,7 +73714,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR05140"
-      - name: ""
+      - name: "L-Isoleucine:tRNA(Ile) ligase (AMP-forming)"
       - metabolites: !!omap
           - MAM01334c: 1
           - MAM01371c: -1
@@ -73723,7 +73733,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR05141"
-      - name: ""
+      - name: "L-Leucine:tRNA(Leu) ligase (AMP-forming)"
       - metabolites: !!omap
           - MAM01334c: 1
           - MAM01371c: -1
@@ -73742,7 +73752,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR05142"
-      - name: ""
+      - name: "L-lysine:tRNALys ligase (AMP-forming)"
       - metabolites: !!omap
           - MAM01334c: 1
           - MAM01371c: -1
@@ -73761,7 +73771,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR05143"
-      - name: ""
+      - name: "L-Methionine:tRNAMet ligase (AMP-forming)"
       - metabolites: !!omap
           - MAM01334c: 1
           - MAM01371c: -1
@@ -73780,7 +73790,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR05144"
-      - name: ""
+      - name: "10-Formyltetrahydrofolate:L-methionyl-tRNA N-formyltransferase"
       - metabolites: !!omap
           - MAM00266c: -1
           - MAM02408c: -1
@@ -73797,7 +73807,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR05145"
-      - name: ""
+      - name: "L-Phenylalanine:tRNA(Ala) ligase (AMP-forming)"
       - metabolites: !!omap
           - MAM01334c: 1
           - MAM01371c: -1
@@ -73816,7 +73826,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR05146"
-      - name: ""
+      - name: "L-proline:tRNA(Pro) ligase (AMP-forming)"
       - metabolites: !!omap
           - MAM01334c: 1
           - MAM01371c: -1
@@ -73835,7 +73845,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR05147"
-      - name: ""
+      - name: "L-Serine:tRNA(Ser) ligase (AMP-forming)"
       - metabolites: !!omap
           - MAM01334c: 1
           - MAM01371c: -1
@@ -73854,7 +73864,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR05148"
-      - name: ""
+      - name: "L-Threonine:tRNA(Thr) ligase (AMP-forming)"
       - metabolites: !!omap
           - MAM01334c: 1
           - MAM01371c: -1
@@ -73873,7 +73883,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR05149"
-      - name: ""
+      - name: "L-Tryptophan -tRNA(Trp) ligase (AMP-forming)"
       - metabolites: !!omap
           - MAM01334c: 1
           - MAM01371c: -1
@@ -73892,7 +73902,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR05150"
-      - name: ""
+      - name: "L-Valine:tRNAVal ligase (AMP-forming)"
       - metabolites: !!omap
           - MAM01334c: 1
           - MAM01371c: -1
@@ -74143,7 +74153,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR07254"
-      - name: ""
+      - name: "(2E,6E)-farnesyl-diphosphate:isopentenyl-diphosphate cistransferase (adding 10-55 isopentenyl units)"
       - metabolites: !!omap
           - MAM01657c: 1
           - MAM02187c: -16
@@ -74230,7 +74240,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR07263"
-      - name: ""
+      - name: "CTP:dolichol O-phosphotransferase"
       - metabolites: !!omap
           - MAM01424c: 1
           - MAM01623c: -1
@@ -74248,7 +74258,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR07264"
-      - name: ""
+      - name: "UDP-N-acetyl-D-glucosamine:dolichyl-phosphate N-acetyl-D-glucosamine phosphotransferase"
       - metabolites: !!omap
           - MAM01733c: -1
           - MAM02522c: 1
@@ -74301,7 +74311,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR07267"
-      - name: ""
+      - name: "GDPmannose:glycolipid 1,3-alpha-D-mannosyltransferase"
       - metabolites: !!omap
           - MAM01323c: 1
           - MAM01390c: -1
@@ -74319,7 +74329,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR07268"
-      - name: ""
+      - name: "GDP-D-mannose:D-Man-alpha-(1->3)-D-Man-beta-(1->4)-D-GlcNAc-beta-(1->4)-D-GlcNAc-diphosphodolichol alpha-6-mannosyltransferase"
       - metabolites: !!omap
           - MAM01323c: -1
           - MAM01865c: 1
@@ -74337,7 +74347,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR07269"
-      - name: ""
+      - name: "GDP-mannose:glycolipid 1,2-alpha-D-mannosyltransferase"
       - metabolites: !!omap
           - MAM01865c: -1
           - MAM01895c: 1
@@ -74355,7 +74365,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR07270"
-      - name: ""
+      - name: "GDP-mannose:glycolipid 1,2-alpha-D-mannosyltransferase"
       - metabolites: !!omap
           - MAM01866c: 1
           - MAM01895c: -1
@@ -74373,7 +74383,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR07271"
-      - name: ""
+      - name: "GDPmannose:dolichyl-phosphate O-beta-D-mannosyltransferase"
       - metabolites: !!omap
           - MAM01733c: -1
           - MAM01734c: 1
@@ -74462,7 +74472,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR07278"
-      - name: ""
+      - name: "UDPglucose:dolichyl-phosphate beta-D-glucosyltransferase"
       - metabolites: !!omap
           - MAM01731r: 1
           - MAM01733r: -1
@@ -74479,7 +74489,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR07279"
-      - name: ""
+      - name: "dolichyl beta-D-glucosyl phosphate:D-Man-alpha-(1->2)-D-Man-alpha-(1->2)-D-Man-alpha-(1->3)-[D-Man-alpha-(1->2)-D-Man-alpha-(1->3)-[D-Man-alpha-(1->2)-D-Man-alpha-(1->6)]-D-Man-alpha-(1->6)]-D-Man-beta-(1->4)-D-GlcNAc-beta-(1->4)-D-GlcNAc-diphosphodolichol alpha-1,3-glucosyltransferase"
       - metabolites: !!omap
           - MAM01731r: -1
           - MAM01733r: 1
@@ -74497,7 +74507,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR07280"
-      - name: ""
+      - name: "dolichyl beta-D-glucosyl phosphate:D-Glc-alpha-(1->3)-D-Man-alpha-(1->2)-D-Man-alpha-(1->2)-D-Man-alpha-(1->3)-[D-Man-alpha-(1->2)-D-Man-alpha-(1->3)-[D-Man-alpha-(1->2)-D-Man-alpha-(1->6)]-D-Man-alpha-(1->6)]-D-Man-beta-(1->4)-D-GlcNAc-beta-(1->4)-D-GlcNAc-diphosphodolichol alpha-1,3-glucosyltransferase"
       - metabolites: !!omap
           - MAM01731r: -1
           - MAM01733r: 1
@@ -74515,7 +74525,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR07281"
-      - name: ""
+      - name: "dolichyl beta-D-glucosyl phosphate:D-Glc-alpha-(1->3)-D-Glc-alpha-(1->3)-D-Man-alpha-(1->2)-D-Man-alpha-(1->2)-D-Man-alpha-(1->3)-[D-Man-alpha-(1->2)-D-Man-alpha-(1->3)-[D-Man-alpha-(1->2)-D-Man-alpha-(1->6)]-D-Man-alpha-(1->6)]-D-Man-beta-(1->4)-D-GlcNAc-beta-(1->4)-D-GlcNAc-diphosphodolichol alpha-1,2-glucosyltransferase"
       - metabolites: !!omap
           - MAM00154r: 1
           - MAM01731r: -1
@@ -76463,7 +76473,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR07619"
-      - name: ""
+      - name: "3'-Phosphoadenylylsulfate:protein-tyrosine O-sulfotransferase"
       - metabolites: !!omap
           - MAM00206c: -1
           - MAM00217c: 1
@@ -77864,7 +77874,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR05407"
-      - name: ""
+      - name: "carbonate hydro-lyase (carbon-dioxide-forming)"
       - metabolites: !!omap
           - MAM01421e: 1
           - MAM01596e: -1
@@ -77898,7 +77908,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03861"
-      - name: ""
+      - name: "3-sulfino-L-alanine:2-oxoglutarate aminotransferase"
       - metabolites: !!omap
           - MAM00918c: -1
           - MAM00919c: 1
@@ -77934,7 +77944,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04084"
-      - name: ""
+      - name: "adenosine-3',5'-bisphosphate 3'-phosphohydrolase"
       - metabolites: !!omap
           - MAM01334c: 1
           - MAM02040c: -1
@@ -77951,7 +77961,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04187"
-      - name: ""
+      - name: "3'-phospho-5'-adenylyl sulfate 3'-phosphohydrolase"
       - metabolites: !!omap
           - MAM01283c: 1
           - MAM02040c: -1
@@ -77988,7 +77998,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04701"
-      - name: ""
+      - name: "S-adenosyl-L-methionine:sarcosine N-methyltransferase"
       - metabolites: !!omap
           - MAM01708c: -1
           - MAM02039c: -1
@@ -78015,7 +78025,7 @@
           - MAM02946c: 1
       - lower_bound: 0
       - upper_bound: 1000
-      - gene_reaction_rule: "Akr1B"
+      - gene_reaction_rule: ""
       - rxnNotes: ""
       - eccodes: "1.1.1.50"
       - references: ""
@@ -78040,7 +78050,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR08662"
-      - name: ""
+      - name: "Itaconate:CoA ligase (GDP-forming)"
       - metabolites: !!omap
           - MAM01597m: -1
           - MAM01948m: 1
@@ -78059,7 +78069,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR08663"
-      - name: ""
+      - name: "Itaconate:CoA ligase (ADP-forming)"
       - metabolites: !!omap
           - MAM01285m: -1
           - MAM01371m: 1
@@ -78078,7 +78088,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR08664"
-      - name: ""
+      - name: "(3S)-citramalyl-CoA hydro-lyase (itaconyl-CoA-forming)"
       - metabolites: !!omap
           - MAM00084m: -1
           - MAM02040m: 1
@@ -78110,7 +78120,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR08666"
-      - name: ""
+      - name: "(3S)-citramalyl-CoA pyruvate-lyase (acetyl-CoA-forming)"
       - metabolites: !!omap
           - MAM00084m: -1
           - MAM01261m: 1
@@ -78181,7 +78191,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR00710"
-      - name: ""
+      - name: "Isocitrate:NADP+ oxidoreductase (decarboxylating)"
       - metabolites: !!omap
           - MAM01306c: 1
           - MAM01596c: 1
@@ -78199,7 +78209,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03787"
-      - name: ""
+      - name: "succinyl-CoA:acetoacetate CoA-transferase"
       - metabolites: !!omap
           - MAM01253m: -1
           - MAM01255m: 1
@@ -78216,7 +78226,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03957"
-      - name: ""
+      - name: "isocitrate:NAD+ oxidoreductase (decarboxylating)"
       - metabolites: !!omap
           - MAM01306m: 1
           - MAM01596m: 1
@@ -78234,7 +78244,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03958"
-      - name: ""
+      - name: "Isocitrate:NADP+ oxidoreductase (decarboxylating)"
       - metabolites: !!omap
           - MAM01306m: 1
           - MAM01596m: 1
@@ -78252,7 +78262,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04111"
-      - name: ""
+      - name: "oxalosuccinate carboxy-lyase (2-oxoglutarate-forming)"
       - metabolites: !!omap
           - MAM01306c: 1
           - MAM01596c: 1
@@ -78269,7 +78279,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04112"
-      - name: ""
+      - name: "oxalosuccinate carboxy-lyase (2-oxoglutarate-forming)"
       - metabolites: !!omap
           - MAM01306m: 1
           - MAM01596m: 1
@@ -78286,7 +78296,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04113"
-      - name: ""
+      - name: "oxalosuccinate carboxy-lyase (2-oxoglutarate-forming)"
       - metabolites: !!omap
           - MAM01306x: 1
           - MAM01596x: 1
@@ -78303,7 +78313,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04139"
-      - name: ""
+      - name: "(S)-malate:NAD+ oxidoreductase"
       - metabolites: !!omap
           - MAM02039c: -1
           - MAM02439c: 1
@@ -78321,7 +78331,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04141"
-      - name: ""
+      - name: "(S)-malate:NAD+ oxidoreductase"
       - metabolites: !!omap
           - MAM02039m: -1
           - MAM02439m: 1
@@ -78339,7 +78349,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04145"
-      - name: ""
+      - name: "acetyl-CoA:oxaloacetate C-acetyltransferase (thioester-hydrolysing)"
       - metabolites: !!omap
           - MAM01261m: 1
           - MAM01587m: -1
@@ -78358,7 +78368,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04147"
-      - name: ""
+      - name: "Succinate:CoA ligase (GDP-forming)"
       - metabolites: !!omap
           - MAM01597m: -1
           - MAM01948m: 1
@@ -78377,7 +78387,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04149"
-      - name: ""
+      - name: "acetyl-CoA:oxaloacetate C-acetyltransferase [(pro-S)-carboxymethyl-forming, ADP-phosphorylating]"
       - metabolites: !!omap
           - MAM01261c: 1
           - MAM01285c: 1
@@ -78397,7 +78407,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04152"
-      - name: ""
+      - name: "Succinate:CoA ligase (ADP-forming)"
       - metabolites: !!omap
           - MAM01285m: -1
           - MAM01371m: 1
@@ -78434,7 +78444,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04408"
-      - name: ""
+      - name: "(S)-malate hydro-lyase (fumarate-forming)"
       - metabolites: !!omap
           - MAM01862c: -1
           - MAM02040c: -1
@@ -78450,7 +78460,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04410"
-      - name: ""
+      - name: "(S)-malate hydro-lyase (fumarate-forming)"
       - metabolites: !!omap
           - MAM01862m: -1
           - MAM02040m: -1
@@ -78466,7 +78476,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04454"
-      - name: ""
+      - name: "citrate hydroxymutase"
       - metabolites: !!omap
           - MAM01587c: -1
           - MAM02183c: 1
@@ -78481,7 +78491,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04456"
-      - name: ""
+      - name: "citrate hydroxymutase"
       - metabolites: !!omap
           - MAM01587m: -1
           - MAM02183m: 1
@@ -78496,7 +78506,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04458"
-      - name: ""
+      - name: "citrate hydro-lyase (cis-aconitate-forming)"
       - metabolites: !!omap
           - MAM01580m: -1
           - MAM01587m: 1
@@ -78512,7 +78522,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04465"
-      - name: ""
+      - name: "D-glycerate:NADP+ 2-oxidoreductase"
       - metabolites: !!omap
           - MAM01982c: 1
           - MAM02039c: -1
@@ -78530,7 +78540,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04585"
-      - name: ""
+      - name: "Isocitrate:NADP+ oxidoreductase"
       - metabolites: !!omap
           - MAM02039c: -1
           - MAM02183c: 1
@@ -78548,7 +78558,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04586"
-      - name: ""
+      - name: "Isocitrate:NADP+ oxidoreductase"
       - metabolites: !!omap
           - MAM02039m: -1
           - MAM02183m: 1
@@ -78566,7 +78576,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04587"
-      - name: ""
+      - name: "Isocitrate:NADP+ oxidoreductase"
       - metabolites: !!omap
           - MAM02039x: -1
           - MAM02183x: 1
@@ -78602,7 +78612,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04589"
-      - name: ""
+      - name: "isocitrate hydro-lyase (cis-aconitate-forming)"
       - metabolites: !!omap
           - MAM01580m: -1
           - MAM02040m: -1
@@ -78618,7 +78628,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04652"
-      - name: ""
+      - name: "succinate:quinone oxidoreductase"
       - metabolites: !!omap
           - MAM01862m: -1
           - MAM02943m: 1
@@ -78635,7 +78645,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR05297"
-      - name: ""
+      - name: "2-oxoglutarate:NAD+ 2-oxidoreductase (CoA-succinylating)"
       - metabolites: !!omap
           - MAM01306m: -1
           - MAM01596m: 1
@@ -78654,7 +78664,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR06411"
-      - name: ""
+      - name: "2-oxoglutarate:[dihydrolipoyllysine-residue succinyltransferase]-lipoyllysine 2-oxidoreductase (decarboxylating, acceptor-succinylating)"
       - metabolites: !!omap
           - MAM01306m: -1
           - MAM01596m: 1
@@ -78689,7 +78699,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR06414"
-      - name: ""
+      - name: "succinyl-CoA:enzyme N6-(dihydrolipoyl)lysine S-succinyltransferase"
       - metabolites: !!omap
           - MAM01597m: -1
           - MAM01701m: 1
@@ -78706,7 +78716,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR07704"
-      - name: ""
+      - name: "Glyoxylate:oxygen oxidoreductase"
       - metabolites: !!omap
           - MAM02007x: -1
           - MAM02039x: 1
@@ -78725,7 +78735,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR07706"
-      - name: ""
+      - name: "glycolate:oxygen 2-oxidoreductase"
       - metabolites: !!omap
           - MAM01998x: -1
           - MAM02007x: 1
@@ -78742,7 +78752,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR08743"
-      - name: ""
+      - name: "succinate:FAD oxidoreductase"
       - metabolites: !!omap
           - MAM01802m: 1
           - MAM01803m: -1
@@ -78777,7 +78787,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR08773"
-      - name: ""
+      - name: "L-xylulose 1-phosphate glycolaldehyde-lyase (glycerone-phosphate-forming)"
       - metabolites: !!omap
           - MAM01690c: 1
           - MAM01760c: -1
@@ -78793,7 +78803,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR08774"
-      - name: ""
+      - name: "hydroxypyruvate carboxy-lyase (glycolaldehyde-forming)"
       - metabolites: !!omap
           - MAM01596c: 1
           - MAM01997c: 1
@@ -78810,7 +78820,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR08775"
-      - name: ""
+      - name: "glycolaldehyde:NAD+ oxidoreductase"
       - metabolites: !!omap
           - MAM01997c: -1
           - MAM01998c: 1
@@ -78829,7 +78839,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR08777"
-      - name: ""
+      - name: "hydroxypyruvate carboxy-lyase (glycolaldehyde-forming)"
       - metabolites: !!omap
           - MAM01596m: 1
           - MAM01997m: 1
@@ -78846,7 +78856,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR08778"
-      - name: ""
+      - name: "glycolaldehyde:NAD+ oxidoreductase"
       - metabolites: !!omap
           - MAM01997m: -1
           - MAM01998m: 1
@@ -78865,7 +78875,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR08779"
-      - name: ""
+      - name: "glycolate:NADP+ oxidoreductase"
       - metabolites: !!omap
           - MAM01998m: 1
           - MAM02007m: -1
@@ -78902,7 +78912,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR08781"
-      - name: ""
+      - name: "ATP:(R)-glycerate 2-phosphotransferase"
       - metabolites: !!omap
           - MAM00674c: 1
           - MAM01285c: 1
@@ -78920,7 +78930,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR08782"
-      - name: ""
+      - name: "D-Glycerate:NAD+ 2-oxidoreductase"
       - metabolites: !!omap
           - MAM01982c: 1
           - MAM02039c: -1
@@ -78938,7 +78948,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03975"
-      - name: ""
+      - name: "diphosphate phosphohydrolase"
       - metabolites: !!omap
           - MAM02039r: 1
           - MAM02040r: -1
@@ -78955,7 +78965,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03977"
-      - name: ""
+      - name: "diphosphate phosphohydrolase"
       - metabolites: !!omap
           - MAM02039c: 1
           - MAM02040c: -1
@@ -78972,7 +78982,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03979"
-      - name: ""
+      - name: "diphosphate phosphohydrolase"
       - metabolites: !!omap
           - MAM02039x: 1
           - MAM02040x: -1
@@ -79006,7 +79016,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR06912"
-      - name: ""
+      - name: "diphosphate phosphohydrolase"
       - metabolites: !!omap
           - MAM02039m: 1
           - MAM02040m: -1
@@ -79023,7 +79033,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR06914"
-      - name: ""
+      - name: "ferrocytochrome-c:oxygen oxidoreductase"
       - metabolites: !!omap
           - MAM01824m: 4
           - MAM01826m: -4
@@ -79042,7 +79052,7 @@
       - confidence_score: 2
     - !!omap
       - id: "MAR06916"
-      - name: ""
+      - name: "ATP phosphohydrolase"
       - metabolites: !!omap
           - MAM01285m: -1
           - MAM01371m: 1
@@ -79080,7 +79090,7 @@
       - confidence_score: 2
     - !!omap
       - id: "MAR06921"
-      - name: ""
+      - name: "NADH:ubiquinone oxidoreductase"
       - metabolites: !!omap
           - MAM02039i: 4
           - MAM02039m: -5
@@ -79099,7 +79109,7 @@
       - confidence_score: 2
     - !!omap
       - id: "MAR03960"
-      - name: ""
+      - name: "superoxide:superoxide oxidoreductase"
       - metabolites: !!omap
           - MAM02039c: -2
           - MAM02041c: 1
@@ -79116,7 +79126,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03980"
-      - name: ""
+      - name: "hydrogen-peroxide:hydrogen-peroxide oxidoreductase"
       - metabolites: !!omap
           - MAM02040c: 2
           - MAM02041c: -2
@@ -79132,7 +79142,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03982"
-      - name: ""
+      - name: "hydrogen-peroxide:hydrogen-peroxide oxidoreductase"
       - metabolites: !!omap
           - MAM02040m: 2
           - MAM02041m: -2
@@ -79148,7 +79158,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04767"
-      - name: ""
+      - name: "bilirubin-glucuronoside:bilirubin-glucuronoside D-glucuronosyltransferase"
       - metabolites: !!omap
           - MAM01396r: -1
           - MAM01397r: -1
@@ -79179,7 +79189,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR08409"
-      - name: ""
+      - name: "superoxide:superoxide oxidoreductase"
       - metabolites: !!omap
           - MAM02039e: -2
           - MAM02041e: 1
@@ -79196,7 +79206,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR08410"
-      - name: ""
+      - name: "superoxide:superoxide oxidoreductase"
       - metabolites: !!omap
           - MAM02039m: -2
           - MAM02041m: 1
@@ -79213,7 +79223,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR08413"
-      - name: ""
+      - name: "superoxide:superoxide oxidoreductase"
       - metabolites: !!omap
           - MAM02039n: -2
           - MAM02041n: 1
@@ -79230,7 +79240,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR08415"
-      - name: ""
+      - name: "superoxide:superoxide oxidoreductase"
       - metabolites: !!omap
           - MAM02039x: -2
           - MAM02041x: 1
@@ -79380,7 +79390,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR00217"
-      - name: ""
+      - name: "Palmitate:CoA ligase (AMP-forming)"
       - metabolites: !!omap
           - MAM01334c: -1
           - MAM01371c: 1
@@ -80216,7 +80226,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR00409"
-      - name: ""
+      - name: "Arachidonate:CoA ligase (AMP-forming)"
       - metabolites: !!omap
           - MAM01334c: -1
           - MAM01362c: 1
@@ -80501,7 +80511,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR02949"
-      - name: ""
+      - name: "Palmitate:CoA ligase (AMP-forming)"
       - metabolites: !!omap
           - MAM01334r: -1
           - MAM01371r: 1
@@ -81280,7 +81290,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR02996"
-      - name: ""
+      - name: "Arachidonate:CoA ligase (AMP-forming)"
       - metabolites: !!omap
           - MAM01334r: -1
           - MAM01362r: 1
@@ -81413,7 +81423,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR02152"
-      - name: ""
+      - name: "Acyl-[acyl-carrier-protein]:malonyl-[acyl-carrier-protein] C-acyltransferase (decarboxylating)"
       - metabolites: !!omap
           - MAM00184c: 1
           - MAM01254c: 1
@@ -81432,7 +81442,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR02153"
-      - name: ""
+      - name: "(3R)-3-hydroxybutanoyl-[acyl-carrier protein]:NADP+ oxidoreductase"
       - metabolites: !!omap
           - MAM00158c: 1
           - MAM01254c: -1
@@ -81450,7 +81460,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR02154"
-      - name: ""
+      - name: "(3R)-3-hydroxybutanoyl-[acyl-carrier-protein] hydro-lyase"
       - metabolites: !!omap
           - MAM00158c: -1
           - MAM01409c: 1
@@ -81466,7 +81476,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR02155"
-      - name: ""
+      - name: "butyryl-[acp]:NADP+ trans-2-oxidoreductase"
       - metabolites: !!omap
           - MAM01409c: -1
           - MAM01411c: 1
@@ -81484,7 +81494,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR02156"
-      - name: ""
+      - name: "butyryl-[acyl-carrier protein]:malonyl-[acyl-carrier-protein] C-acyltransferase (decarboxylating)"
       - metabolites: !!omap
           - MAM00184c: 1
           - MAM00881c: 1
@@ -81503,7 +81513,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR02157"
-      - name: ""
+      - name: "(3R)-3-hydroxyhexanoyl-[acyl-carrier-protein]:NADP+ oxidoreductase"
       - metabolites: !!omap
           - MAM00881c: -1
           - MAM01635c: 1
@@ -81521,7 +81531,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR02158"
-      - name: ""
+      - name: "(3R)-3-hydroxybutanoyl-[acyl-carrier-protein] hydro-lyase"
       - metabolites: !!omap
           - MAM00052c: 1
           - MAM01635c: -1
@@ -81537,7 +81547,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR02159"
-      - name: ""
+      - name: "hexanoyl-[acp]:NADP+ trans-2-oxidoreductase"
       - metabolites: !!omap
           - MAM00052c: -1
           - MAM02039c: -1
@@ -81555,7 +81565,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR02160"
-      - name: ""
+      - name: "hexanoyl-[acyl-carrier protein]:malonyl-[acyl-carrier-protein] C-acyltransferase (decarboxylating)"
       - metabolites: !!omap
           - MAM00184c: 1
           - MAM00891c: 1
@@ -81574,7 +81584,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR02161"
-      - name: ""
+      - name: "(3R)-3-hydroxyoctanoyl-[acyl-carrier-protein]:NADP+ oxidoreductase"
       - metabolites: !!omap
           - MAM00161c: 1
           - MAM00891c: -1
@@ -81592,7 +81602,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR02162"
-      - name: ""
+      - name: "(3R)-3-hydroxyoctanoyl-[acyl-carrier-protein] hydro-lyase"
       - metabolites: !!omap
           - MAM00058c: 1
           - MAM00161c: -1
@@ -81608,7 +81618,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR02163"
-      - name: ""
+      - name: "octanoyl-[acp]:NADP+ trans-2-oxidoreductase"
       - metabolites: !!omap
           - MAM00058c: -1
           - MAM02039c: -1
@@ -81626,7 +81636,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR02164"
-      - name: ""
+      - name: "Octanoyl-[acyl-carrier protein]:malonyl-[acyl-carrier-protein] C-acyltransferase (decarboxylating)"
       - metabolites: !!omap
           - MAM00184c: 1
           - MAM00857c: 1
@@ -81645,7 +81655,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR02165"
-      - name: ""
+      - name: "(3R)-3-hydroxydecanoyl-[acyl-carrier-protein]:NADP+ oxidoreductase"
       - metabolites: !!omap
           - MAM00160c: 1
           - MAM00857c: -1
@@ -81663,7 +81673,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR02166"
-      - name: ""
+      - name: "(3R)-3-hydroxydecanoyl-[acyl-carrier-protein] hydro-lyase"
       - metabolites: !!omap
           - MAM00038c: 1
           - MAM00160c: -1
@@ -81679,7 +81689,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR02167"
-      - name: ""
+      - name: "decanoyl-[acp]:NADP+ trans-2-oxidoreductase"
       - metabolites: !!omap
           - MAM00038c: -1
           - MAM01649c: 1
@@ -81697,7 +81707,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR02168"
-      - name: ""
+      - name: "Decanoyl-[acyl-carrier protein]:malonyl-[acyl-carrier-protein] C-acyltransferase (decarboxylating)"
       - metabolites: !!omap
           - MAM00184c: 1
           - MAM00867c: 1
@@ -81716,7 +81726,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR02169"
-      - name: ""
+      - name: "(3R)-3-hydroxydodecanoyl-[acyl-carrier-protein]:NADP+ oxidoreductase"
       - metabolites: !!omap
           - MAM00867c: -1
           - MAM01634c: 1
@@ -81734,7 +81744,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR02170"
-      - name: ""
+      - name: "(3R)-3-hydroxydodecanoyl-[acyl-carrier-protein] hydro-lyase"
       - metabolites: !!omap
           - MAM00041c: 1
           - MAM01634c: -1
@@ -81750,7 +81760,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR02171"
-      - name: ""
+      - name: "dodecanoyl-[acp]:NADP+ trans-2-oxidoreductase"
       - metabolites: !!omap
           - MAM00041c: -1
           - MAM01728c: 1
@@ -81768,7 +81778,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR02173"
-      - name: ""
+      - name: "dodecanoyl-[acyl-carrier-protein]:malonyl-[acyl-carrier-protein] C-acyltransferase (decarboxylating)"
       - metabolites: !!omap
           - MAM00184c: 1
           - MAM00905c: 1
@@ -81787,7 +81797,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR02174"
-      - name: ""
+      - name: "(3R)-3-hydroxytetradecanoyl-[acyl-carrier-protein]:NADP+ oxidoreductase"
       - metabolites: !!omap
           - MAM00905c: -1
           - MAM02039c: -1
@@ -81805,7 +81815,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR02175"
-      - name: ""
+      - name: "(3R)-3-hydroxytetradecanoyl-[acyl-carrier-protein] hydro-lyase"
       - metabolites: !!omap
           - MAM00065c: 1
           - MAM02040c: 1
@@ -81821,7 +81831,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR02176"
-      - name: ""
+      - name: "tetradecanoyl-[acp]:NADP+ trans-2-oxidoreductase"
       - metabolites: !!omap
           - MAM00065c: -1
           - MAM02039c: -1
@@ -81839,7 +81849,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR02178"
-      - name: ""
+      - name: "Tetradecanoyl-[acyl-carrier protein]:malonyl-[acyl-carrier-protein] C-acyltransferase (decarboxylating)"
       - metabolites: !!omap
           - MAM00184c: 1
           - MAM00880c: 1
@@ -81858,7 +81868,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR02179"
-      - name: ""
+      - name: "(3R)-3-hydroxypalmitoyl-[acyl-carrier-protein]:NADP+ oxidoreductase"
       - metabolites: !!omap
           - MAM00162c: 1
           - MAM00880c: -1
@@ -81876,7 +81886,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR02180"
-      - name: ""
+      - name: "(3R)-3-hydroxypalmitoyl-[acyl-carrier-protein] hydro-lyase"
       - metabolites: !!omap
           - MAM00050c: 1
           - MAM00162c: -1
@@ -81892,7 +81902,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR02181"
-      - name: ""
+      - name: "hexadecanoyl-[acp]:NADP+ trans-2-oxidoreductase"
       - metabolites: !!omap
           - MAM00050c: -1
           - MAM02039c: -1
@@ -81910,7 +81920,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04156"
-      - name: ""
+      - name: "acetyl-CoA:carbon-dioxide ligase (ADP-forming)"
       - metabolites: !!omap
           - MAM01261c: -1
           - MAM01285c: 1
@@ -81930,7 +81940,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04295"
-      - name: ""
+      - name: "acetyl-CoA:carbon-dioxide ligase (ADP-forming)"
       - metabolites: !!omap
           - MAM01261m: -1
           - MAM01285m: 1
@@ -83051,7 +83061,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR02191"
-      - name: ""
+      - name: "3-hydroxyoctadecanoyl-CoA:NADP+ oxidoreductase"
       - metabolites: !!omap
           - MAM00793c: 1
           - MAM00890c: -1
@@ -83085,7 +83095,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR02194"
-      - name: ""
+      - name: "octadecanoyl-CoA:NADP+ trans-2-oxidoreductase"
       - metabolites: !!omap
           - MAM00057c: -1
           - MAM02039c: -1
@@ -83880,7 +83890,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR00709"
-      - name: ""
+      - name: "palmitoyl-CoA hydrolase"
       - metabolites: !!omap
           - MAM01597x: 1
           - MAM02039x: 1
@@ -83898,7 +83908,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR02150"
-      - name: ""
+      - name: "acetyl-CoA:[acyl-carrier-protein] S-acetyltransferase"
       - metabolites: !!omap
           - MAM00184c: -1
           - MAM01258c: 1
@@ -83915,7 +83925,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR02151"
-      - name: ""
+      - name: "Malonyl-CoA:[acyl-carrier-protein] S-malonyltransferase"
       - metabolites: !!omap
           - MAM00184c: -1
           - MAM01597c: 1
@@ -83932,7 +83942,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR02172"
-      - name: ""
+      - name: "dodecanoyl-[acyl-carrier-protein] hydrolase"
       - metabolites: !!omap
           - MAM00184c: 1
           - MAM01728c: -1
@@ -83950,7 +83960,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR02177"
-      - name: ""
+      - name: "tetradecanoyl-[acyl-carrier protein] hydrolase"
       - metabolites: !!omap
           - MAM00184c: 1
           - MAM02039c: 1
@@ -83968,7 +83978,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR02182"
-      - name: ""
+      - name: "hexadecanoyl-[acyl-carrier protein] hydrolase"
       - metabolites: !!omap
           - MAM00184c: 1
           - MAM02039c: 1
@@ -84040,7 +84050,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR02437"
-      - name: ""
+      - name: "linoleate:oxygen 9-oxidoreductase"
       - metabolites: !!omap
           - MAM01217c: 1
           - MAM02387c: -1
@@ -84056,7 +84066,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR02439"
-      - name: ""
+      - name: "linoleate:oxygen 11S-oxidoreductase"
       - metabolites: !!omap
           - MAM00298c: 1
           - MAM02387c: -1
@@ -84390,7 +84400,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR02459"
-      - name: ""
+      - name: "9(10)-EpOME hydrolase"
       - metabolites: !!omap
           - MAM01216c: -1
           - MAM01220c: 1
@@ -84406,7 +84416,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR02460"
-      - name: ""
+      - name: "9(10)-EpOME hydrolase"
       - metabolites: !!omap
           - MAM01216r: -1
           - MAM01220r: 1
@@ -84676,7 +84686,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR06401"
-      - name: ""
+      - name: "lipoyl-[acp]:protein N6-lipoyltransferase"
       - metabolites: !!omap
           - MAM00184c: 1
           - MAM00209c: 1
@@ -84693,7 +84703,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR06402"
-      - name: ""
+      - name: "octanoyl-[acp]:protein N6-octanoyltransferase"
       - metabolites: !!omap
           - MAM00184c: 1
           - MAM00210c: 1
@@ -84710,7 +84720,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR06403"
-      - name: ""
+      - name: "[protein]-N6-(octanoyl)-L-lysine:an [Fe-S] cluster scaffold protein carrying a [4Fe-4S]2+ cluster sulfurtransferase"
       - metabolites: !!omap
           - MAM00209c: 1
           - MAM00210c: -1
@@ -84734,7 +84744,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR06404"
-      - name: ""
+      - name: "protein N6-(dihydrolipoyl)lysine:NAD+ oxidoreductase"
       - metabolites: !!omap
           - MAM00208c: 1
           - MAM00209c: -1
@@ -85096,7 +85106,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR02513"
-      - name: ""
+      - name: "(4Z,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA:acetyl-CoA C-acyltransferase"
       - metabolites: !!omap
           - MAM00095x: 1
           - MAM00814x: -1
@@ -85812,7 +85822,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR02368"
-      - name: ""
+      - name: "linoleoyl-CoA,ferrocytochrome b5:oxygen oxidoreductase (6,7 cis-dehydrogenating)"
       - metabolites: !!omap
           - MAM01934c: 1
           - MAM02039c: -1
@@ -86156,7 +86166,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR02411"
-      - name: ""
+      - name: "(4Z,7Z,10Z,13Z,16Z)-docosapentaenoyl-CoA:acetyl-CoA C-acyltransferase"
       - metabolites: !!omap
           - MAM00093x: 1
           - MAM00853x: -1
@@ -87038,7 +87048,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR00945"
-      - name: ""
+      - name: "5,6-EET hydrolase"
       - metabolites: !!omap
           - MAM01051c: 1
           - MAM01054c: -1
@@ -87112,7 +87122,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR00949"
-      - name: ""
+      - name: "8,9-EET hydrolase"
       - metabolites: !!omap
           - MAM01208c: 1
           - MAM01209c: -1
@@ -87167,7 +87177,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR00953"
-      - name: ""
+      - name: "11,12-EET hydrolase"
       - metabolites: !!omap
           - MAM00277c: 1
           - MAM00279c: -1
@@ -87241,7 +87251,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR00957"
-      - name: ""
+      - name: "14,15-EET hydrolase"
       - metabolites: !!omap
           - MAM00364c: 1
           - MAM00366c: -1
@@ -87257,7 +87267,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR00960"
-      - name: ""
+      - name: "Glutathione: 5-HPETE oxidoreductase"
       - metabolites: !!omap
           - MAM01040c: 1
           - MAM01042c: -1
@@ -87275,7 +87285,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR00963"
-      - name: ""
+      - name: "Glutathione: 5-HPETE oxidoreductase"
       - metabolites: !!omap
           - MAM01040m: 1
           - MAM01042m: -1
@@ -87344,7 +87354,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR00988"
-      - name: ""
+      - name: "Glutathione: 15-HPETE oxidoreductase"
       - metabolites: !!omap
           - MAM00377c: -1
           - MAM00380c: 1
@@ -87362,7 +87372,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR00989"
-      - name: ""
+      - name: "(15S)-15-Hydroxy-5,8,11-cis-13-trans-icosatetraenoate:NADP+ 15-oxidoreductase"
       - metabolites: !!omap
           - MAM00377c: -1
           - MAM00393c: 1
@@ -87380,7 +87390,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR00990"
-      - name: ""
+      - name: "(15S)-15-Hydroxy-5,8,11-cis-13-trans-icosatetraenoate:NAD+ 15-oxidoreductase"
       - metabolites: !!omap
           - MAM00377c: -1
           - MAM00393c: 1
@@ -87702,7 +87712,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR01041"
-      - name: ""
+      - name: "12-HPETE hydroxymutase"
       - metabolites: !!omap
           - MAM00309c: -1
           - MAM02098c: 1
@@ -87717,7 +87727,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR01042"
-      - name: ""
+      - name: "Hepoxilin B3 hydrolase"
       - metabolites: !!omap
           - MAM02040c: -1
           - MAM02098c: -1
@@ -87733,7 +87743,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR01043"
-      - name: ""
+      - name: "12-HPETE hydroxymutase"
       - metabolites: !!omap
           - MAM00309c: -1
           - MAM02096c: 1
@@ -87748,7 +87758,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR01045"
-      - name: ""
+      - name: "12-HPETE hydroxymutase"
       - metabolites: !!omap
           - MAM00309e: -1
           - MAM02096e: 1
@@ -87763,7 +87773,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR01048"
-      - name: ""
+      - name: "12-HPETE hydroxymutase"
       - metabolites: !!omap
           - MAM00309x: -1
           - MAM02096x: 1
@@ -87778,7 +87788,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR01049"
-      - name: ""
+      - name: "12-HPETE hydroxymutase"
       - metabolites: !!omap
           - MAM00309r: -1
           - MAM02096r: 1
@@ -88096,7 +88106,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR01080"
-      - name: ""
+      - name: "(7E,9E,11Z,14Z)-(5S,6S)-5,6-Epoxyicosa-7,9,11,14-tetraenoate hydrolase"
       - metabolites: !!omap
           - MAM02040c: -1
           - MAM02362c: -1
@@ -90236,7 +90246,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR01287"
-      - name: ""
+      - name: "(7E,9E,11Z,14Z)-(5S,6R)-6-(cystein-S-yl)-5-hydroxyicosa-7,9,11,14-tetraenoate,NADPH:oxygen oxidoreductase (20-hydroxylating)"
       - metabolites: !!omap
           - MAM00596x: 1
           - MAM02039x: -1
@@ -90483,7 +90493,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04796"
-      - name: ""
+      - name: "leukotriene-C4 hydrolase"
       - metabolites: !!omap
           - MAM01974c: 1
           - MAM02040c: -1
@@ -90500,7 +90510,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR08546"
-      - name: ""
+      - name: "(13E)-(15S)-11alpha,15-dihydroxy-9-oxoprost-13-enoate:NADP+ 15-oxidoreductase"
       - metabolites: !!omap
           - MAM00013c: -1
           - MAM02039c: -1
@@ -90535,7 +90545,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR08548"
-      - name: ""
+      - name: "leukotriene-C4 hydrolase"
       - metabolites: !!omap
           - MAM01974r: 1
           - MAM02040r: -1
@@ -90606,7 +90616,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR08559"
-      - name: ""
+      - name: "(5Z,13E)-(15S)-9alpha,11alpha-epidioxy-15-hydroxyprosta-5,13- dienoate D-isomerase"
       - metabolites: !!omap
           - MAM02783r: -1
           - MAM02794r: 1
@@ -90621,7 +90631,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR08560"
-      - name: ""
+      - name: "(5Z,13E)-(15S)-9alpha,11alpha-epidioxy-15-hydroxyprosta-5,13- dienoate E-isomerase"
       - metabolites: !!omap
           - MAM02786r: -1
           - MAM02794r: 1
@@ -90672,7 +90682,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03476"
-      - name: ""
+      - name: "Formyl-CoA hydrolase"
       - metabolites: !!omap
           - MAM01597x: 1
           - MAM01833x: 1
@@ -90690,7 +90700,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03477"
-      - name: ""
+      - name: "Formyl-CoA hydrolase"
       - metabolites: !!omap
           - MAM01597c: 1
           - MAM01833c: 1
@@ -90725,7 +90735,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR02591"
-      - name: ""
+      - name: "Acetyl-CoA:carnitine O-acetyltransferase"
       - metabolites: !!omap
           - MAM01261c: 1
           - MAM01597c: -1
@@ -90759,7 +90769,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR02599"
-      - name: ""
+      - name: "palmitoyl-CoA:L-carnitine O-palmitoyltransferase"
       - metabolites: !!omap
           - MAM01597c: -1
           - MAM02348c: 1
@@ -90895,7 +90905,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR02626"
-      - name: ""
+      - name: "palmitoyl-CoA:L-carnitine O-palmitoyltransferase"
       - metabolites: !!omap
           - MAM01597c: -1
           - MAM02348c: 1
@@ -90929,7 +90939,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR02636"
-      - name: ""
+      - name: "palmitoyl-CoA:L-carnitine O-palmitoyltransferase"
       - metabolites: !!omap
           - MAM01597c: -1
           - MAM02348c: 1
@@ -91456,7 +91466,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR02742"
-      - name: ""
+      - name: "palmitoyl-CoA:L-carnitine O-palmitoyltransferase"
       - metabolites: !!omap
           - MAM01597c: -1
           - MAM02348c: 1
@@ -91507,7 +91517,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR02755"
-      - name: ""
+      - name: "palmitoyl-CoA:L-carnitine O-palmitoyltransferase"
       - metabolites: !!omap
           - MAM01363c: -1
           - MAM01364c: 1
@@ -91627,7 +91637,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03032"
-      - name: ""
+      - name: "Octanoyl-CoA:L-carnitine O-octanoyltransferase"
       - metabolites: !!omap
           - MAM01597c: -1
           - MAM02348c: 1
@@ -91729,7 +91739,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR00163"
-      - name: ""
+      - name: "Octanoyl-CoA:L-carnitine O-octanoyltransferase"
       - metabolites: !!omap
           - MAM01597m: -1
           - MAM02348m: 1
@@ -91763,7 +91773,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR02593"
-      - name: ""
+      - name: "Acetyl-CoA:carnitine O-acetyltransferase"
       - metabolites: !!omap
           - MAM01261m: 1
           - MAM01597m: -1
@@ -91831,7 +91841,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR02601"
-      - name: ""
+      - name: "palmitoyl-CoA:L-carnitine O-palmitoyltransferase"
       - metabolites: !!omap
           - MAM01597m: -1
           - MAM02348m: 1
@@ -92103,7 +92113,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR02630"
-      - name: ""
+      - name: "palmitoyl-CoA:L-carnitine O-palmitoyltransferase"
       - metabolites: !!omap
           - MAM01597m: -1
           - MAM02348m: 1
@@ -92171,7 +92181,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR02640"
-      - name: ""
+      - name: "palmitoyl-CoA:L-carnitine O-palmitoyltransferase"
       - metabolites: !!omap
           - MAM01597m: -1
           - MAM02348m: 1
@@ -93327,7 +93337,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR02758"
-      - name: ""
+      - name: "palmitoyl-CoA:L-carnitine O-palmitoyltransferase"
       - metabolites: !!omap
           - MAM01363m: -1
           - MAM01364m: 1
@@ -93600,7 +93610,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03028"
-      - name: ""
+      - name: "palmitoyl-CoA:L-carnitine O-palmitoyltransferase"
       - metabolites: !!omap
           - MAM01597x: -1
           - MAM02348x: 1
@@ -93634,7 +93644,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03030"
-      - name: ""
+      - name: "Acetyl-CoA:carnitine O-acetyltransferase"
       - metabolites: !!omap
           - MAM01261x: 1
           - MAM01597x: -1
@@ -93668,7 +93678,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03034"
-      - name: ""
+      - name: "Octanoyl-CoA:L-carnitine O-octanoyltransferase"
       - metabolites: !!omap
           - MAM01597x: -1
           - MAM02348x: 1
@@ -93736,7 +93746,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR02780"
-      - name: ""
+      - name: "Acetyl-CoA:carnitine O-acetyltransferase"
       - metabolites: !!omap
           - MAM01261r: 1
           - MAM01597r: -1
@@ -93770,7 +93780,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR02785"
-      - name: ""
+      - name: "palmitoyl-CoA:L-carnitine O-palmitoyltransferase"
       - metabolites: !!omap
           - MAM01597r: -1
           - MAM02348r: 1
@@ -94042,7 +94052,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR02803"
-      - name: ""
+      - name: "palmitoyl-CoA:L-carnitine O-palmitoyltransferase"
       - metabolites: !!omap
           - MAM01597r: -1
           - MAM02348r: 1
@@ -94110,7 +94120,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR02809"
-      - name: ""
+      - name: "palmitoyl-CoA:L-carnitine O-palmitoyltransferase"
       - metabolites: !!omap
           - MAM01597r: -1
           - MAM02348r: 1
@@ -95198,7 +95208,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR02882"
-      - name: ""
+      - name: "palmitoyl-CoA:L-carnitine O-palmitoyltransferase"
       - metabolites: !!omap
           - MAM01597r: -1
           - MAM02348r: 1
@@ -95300,7 +95310,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR02894"
-      - name: ""
+      - name: "palmitoyl-CoA:L-carnitine O-palmitoyltransferase"
       - metabolites: !!omap
           - MAM01363r: -1
           - MAM01364r: 1
@@ -95963,7 +95973,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR00002"
-      - name: ""
+      - name: "triacylglycerol acylhydrolase"
       - metabolites: !!omap
           - MAM00234e: 1
           - MAM01807e: 1
@@ -95980,7 +95990,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR00003"
-      - name: ""
+      - name: "1,2-diacyl-sn-glycerol acylhydrolase"
       - metabolites: !!omap
           - MAM00234e: -1
           - MAM00503e: 1
@@ -95997,7 +96007,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR00005"
-      - name: ""
+      - name: "1-acylglycerol acylhydrolase"
       - metabolites: !!omap
           - MAM00503c: -1
           - MAM01807c: 1
@@ -96014,7 +96024,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR00449"
-      - name: ""
+      - name: "sn-Glycerol-3-phosphate:(acceptor) 2-oxidoreductase"
       - metabolites: !!omap
           - MAM01690m: 1
           - MAM01802m: -1
@@ -96031,7 +96041,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR00604"
-      - name: ""
+      - name: "ATP:1,2-diacylglycerol 3-phosphotransferase"
       - metabolites: !!omap
           - MAM00240c: -1
           - MAM01285c: 1
@@ -96049,7 +96059,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR00605"
-      - name: ""
+      - name: "acyl-CoA:1,2-diacyl-sn-glycerol O-acyltransferase"
       - metabolites: !!omap
           - MAM00240c: -1
           - MAM01597c: 1
@@ -96066,7 +96076,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR00665"
-      - name: ""
+      - name: "triacylglycerol acylhydrolase"
       - metabolites: !!omap
           - MAM00240c: 1
           - MAM02039c: 1
@@ -96084,7 +96094,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR00667"
-      - name: ""
+      - name: "1,2-diacyl-sn-glycerol acylhydrolase"
       - metabolites: !!omap
           - MAM00240c: -1
           - MAM00509c: 1
@@ -96102,7 +96112,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR00668"
-      - name: ""
+      - name: "1,2-diacyl-sn-glycerol acylhydrolase"
       - metabolites: !!omap
           - MAM00237c: -1
           - MAM00506c: 1
@@ -96120,7 +96130,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR00669"
-      - name: ""
+      - name: "1,2-diacyl-sn-glycerol acylhydrolase"
       - metabolites: !!omap
           - MAM00235c: -1
           - MAM00504c: 1
@@ -96138,7 +96148,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR00670"
-      - name: ""
+      - name: "1,2-diacyl-sn-glycerol acylhydrolase"
       - metabolites: !!omap
           - MAM00236c: -1
           - MAM00505c: 1
@@ -96156,7 +96166,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR00671"
-      - name: ""
+      - name: "1,2-diacyl-sn-glycerol acylhydrolase"
       - metabolites: !!omap
           - MAM00238c: -1
           - MAM00507c: 1
@@ -96174,7 +96184,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR00672"
-      - name: ""
+      - name: "1,2-diacyl-sn-glycerol acylhydrolase"
       - metabolites: !!omap
           - MAM00239c: -1
           - MAM00508c: 1
@@ -96192,7 +96202,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR00679"
-      - name: ""
+      - name: "1-acylglycerol acylhydrolase"
       - metabolites: !!omap
           - MAM00509c: -1
           - MAM01983c: 1
@@ -96210,7 +96220,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR00680"
-      - name: ""
+      - name: "1-acylglycerol acylhydrolase"
       - metabolites: !!omap
           - MAM00504c: -1
           - MAM01983c: 1
@@ -96228,7 +96238,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR00681"
-      - name: ""
+      - name: "1-acylglycerol acylhydrolase"
       - metabolites: !!omap
           - MAM00505c: -1
           - MAM01983c: 1
@@ -96246,7 +96256,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR00682"
-      - name: ""
+      - name: "1-acylglycerol acylhydrolase"
       - metabolites: !!omap
           - MAM00507c: -1
           - MAM01983c: 1
@@ -96264,7 +96274,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR00683"
-      - name: ""
+      - name: "1-acylglycerol acylhydrolase"
       - metabolites: !!omap
           - MAM00506c: -1
           - MAM01983c: 1
@@ -96282,7 +96292,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR00684"
-      - name: ""
+      - name: "1-acylglycerol acylhydrolase"
       - metabolites: !!omap
           - MAM00508c: -1
           - MAM01983c: 1
@@ -96300,7 +96310,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR07588"
-      - name: ""
+      - name: "Acyl-CoA:glycerone-phosphate O-acyltransferase"
       - metabolites: !!omap
           - MAM01278c: 1
           - MAM01597c: 1
@@ -96740,7 +96750,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03079"
-      - name: ""
+      - name: "(S)-3-Hydroxyhexadecanoyl-CoA hydro-lyase"
       - metabolites: !!omap
           - MAM00051x: -1
           - MAM00175x: 1
@@ -96756,7 +96766,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03080"
-      - name: ""
+      - name: "(S)-3-Hydroxyhexadecanoyl-CoA:NAD+ oxidoreductase"
       - metabolites: !!omap
           - MAM00175x: -1
           - MAM00895x: 1
@@ -96774,7 +96784,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03081"
-      - name: ""
+      - name: "myristoyl-CoA:acetylCoA C-myristoyltransferase"
       - metabolites: !!omap
           - MAM00895x: -1
           - MAM01261x: 1
@@ -96808,7 +96818,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03083"
-      - name: ""
+      - name: "(S)-3-Hydroxytetradecanoyl-CoA hydro-lyase"
       - metabolites: !!omap
           - MAM00066x: -1
           - MAM00178x: 1
@@ -96824,7 +96834,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03084"
-      - name: ""
+      - name: "(S)-3-Hydroxytetradecanoyl-CoA:NAD+ oxidoreductase"
       - metabolites: !!omap
           - MAM00178x: -1
           - MAM00906x: 1
@@ -96842,7 +96852,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03085"
-      - name: ""
+      - name: "Lauroyl-CoA:acetyl-CoA C-acyltransferase"
       - metabolites: !!omap
           - MAM00906x: -1
           - MAM01261x: 1
@@ -96876,7 +96886,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03087"
-      - name: ""
+      - name: "(S)-3-Hydroxydodecanoyl-CoA hydro-lyase"
       - metabolites: !!omap
           - MAM00042x: -1
           - MAM00174x: 1
@@ -96892,7 +96902,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03088"
-      - name: ""
+      - name: "(S)-3-hydroxydodecanoyl-CoA:NAD+ oxidoreductase"
       - metabolites: !!omap
           - MAM00174x: -1
           - MAM00868x: 1
@@ -96910,7 +96920,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03089"
-      - name: ""
+      - name: "Decanoyl-CoA:acetyl-CoA C-acyltransferase"
       - metabolites: !!omap
           - MAM00868x: -1
           - MAM01261x: 1
@@ -96944,7 +96954,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03091"
-      - name: ""
+      - name: "(S)-Hydroxydecanoyl-CoA hydro-lyase"
       - metabolites: !!omap
           - MAM00039x: -1
           - MAM00181x: 1
@@ -96960,7 +96970,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03092"
-      - name: ""
+      - name: "(S)-hydroxydecanoyl-CoA:NAD+ oxidoreductase"
       - metabolites: !!omap
           - MAM00181x: -1
           - MAM00858x: 1
@@ -96978,7 +96988,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03093"
-      - name: ""
+      - name: "Octanoyl-CoA:acetyl-CoA C-acyltransferase"
       - metabolites: !!omap
           - MAM00858x: -1
           - MAM01261x: 1
@@ -97012,7 +97022,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03095"
-      - name: ""
+      - name: "(S)-Hydroxyoctanoyl-CoA hydro-lyase"
       - metabolites: !!omap
           - MAM00059x: -1
           - MAM00183x: 1
@@ -97028,7 +97038,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03096"
-      - name: ""
+      - name: "(S)-hydroxyoctanoyl-CoA:NAD+ oxidoreductase"
       - metabolites: !!omap
           - MAM00183x: -1
           - MAM00892x: 1
@@ -97046,7 +97056,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03097"
-      - name: ""
+      - name: "Hexanoyl-CoA:acetyl-CoA C-acyltransferase"
       - metabolites: !!omap
           - MAM00892x: -1
           - MAM01261x: 1
@@ -97080,7 +97090,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03099"
-      - name: ""
+      - name: "(S)-Hydroxyhexanoyl-CoA hydro-lyase"
       - metabolites: !!omap
           - MAM00053x: -1
           - MAM00182x: 1
@@ -97096,7 +97106,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03100"
-      - name: ""
+      - name: "(S)-hydroxyhexanoyl-CoA:NAD+ oxidoreductase"
       - metabolites: !!omap
           - MAM00182x: -1
           - MAM00882x: 1
@@ -97114,7 +97124,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03101"
-      - name: ""
+      - name: "butanoyl-CoA:acetyl-CoA C-butanoyltransferase"
       - metabolites: !!omap
           - MAM00882x: -1
           - MAM01261x: 1
@@ -97148,7 +97158,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03103"
-      - name: ""
+      - name: "(S)-3-hydroxybutanoyl-CoA hydro-lyase"
       - metabolites: !!omap
           - MAM00173x: 1
           - MAM01622x: -1
@@ -97164,7 +97174,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03104"
-      - name: ""
+      - name: "(S)-3-Hydroxybutanoyl-CoA:NAD+ oxidoreductase"
       - metabolites: !!omap
           - MAM00173x: -1
           - MAM01255x: 1
@@ -97696,7 +97706,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03355"
-      - name: ""
+      - name: "3-cis-Dodecenoyl-CoA delta3-cis-delta2-trans-isomerase"
       - metabolites: !!omap
           - MAM00042x: -1
           - MAM00088x: 1
@@ -97877,7 +97887,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03480"
-      - name: ""
+      - name: "Phytanate:CoA ligase (AMP-forming)"
       - metabolites: !!omap
           - MAM01334c: -1
           - MAM01371c: 1
@@ -97911,7 +97921,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03482"
-      - name: ""
+      - name: "Phytanate:CoA ligase (AMP-forming)"
       - metabolites: !!omap
           - MAM01334x: -1
           - MAM01371x: 1
@@ -98050,7 +98060,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03505"
-      - name: ""
+      - name: "4,8,12-trimethyltridecanoyl-CoA:propanoyl-CoA C2-4,8,12-trimethyltridecanoyltransferase"
       - metabolites: !!omap
           - MAM00813x: -1
           - MAM00948x: 1
@@ -98437,7 +98447,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03316"
-      - name: ""
+      - name: "cis,cis-3,6-Dodecadienoyl-CoA delta3-cis-delta2-trans-isomerase"
       - metabolites: !!omap
           - MAM01575x: -1
           - MAM03021x: 1
@@ -98738,7 +98748,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03121"
-      - name: ""
+      - name: "palmitoyl-CoA:electron-transfer flavoprotein 2,3-oxidoreductase"
       - metabolites: !!omap
           - MAM00051m: 1
           - MAM01802m: -1
@@ -98755,7 +98765,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03122"
-      - name: ""
+      - name: "(S)-3-Hydroxyhexadecanoyl-CoA hydro-lyase"
       - metabolites: !!omap
           - MAM00051m: -1
           - MAM00175m: 1
@@ -98771,7 +98781,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03123"
-      - name: ""
+      - name: "(S)-3-Hydroxyhexadecanoyl-CoA:NAD+ oxidoreductase"
       - metabolites: !!omap
           - MAM00175m: -1
           - MAM00895m: 1
@@ -98789,7 +98799,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03125"
-      - name: ""
+      - name: "myristoyl-CoA:acetylCoA C-myristoyltransferase"
       - metabolites: !!omap
           - MAM00895m: -1
           - MAM01261m: 1
@@ -98806,7 +98816,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03128"
-      - name: ""
+      - name: "tetradecanoyl-CoA:electron-transfer flavoprotein 2,3-oxidoreductase"
       - metabolites: !!omap
           - MAM00066m: 1
           - MAM01802m: -1
@@ -98823,7 +98833,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03129"
-      - name: ""
+      - name: "(S)-3-Hydroxytetradecanoyl-CoA hydro-lyase"
       - metabolites: !!omap
           - MAM00066m: -1
           - MAM00178m: 1
@@ -98839,7 +98849,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03130"
-      - name: ""
+      - name: "(S)-3-Hydroxytetradecanoyl-CoA:NAD+ oxidoreductase"
       - metabolites: !!omap
           - MAM00178m: -1
           - MAM00906m: 1
@@ -98857,7 +98867,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03132"
-      - name: ""
+      - name: "Lauroyl-CoA:acetyl-CoA C-acyltransferase"
       - metabolites: !!omap
           - MAM00906m: -1
           - MAM01261m: 1
@@ -98874,7 +98884,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03135"
-      - name: ""
+      - name: "lauroyl-CoA:electron-transfer flavoprotein 2,3-oxidoreductase"
       - metabolites: !!omap
           - MAM00042m: 1
           - MAM01802m: -1
@@ -98891,7 +98901,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03136"
-      - name: ""
+      - name: "(S)-3-Hydroxydodecanoyl-CoA hydro-lyase"
       - metabolites: !!omap
           - MAM00042m: -1
           - MAM00174m: 1
@@ -98907,7 +98917,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03137"
-      - name: ""
+      - name: "(S)-3-hydroxydodecanoyl-CoA:NAD+ oxidoreductase"
       - metabolites: !!omap
           - MAM00174m: -1
           - MAM00868m: 1
@@ -98925,7 +98935,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03139"
-      - name: ""
+      - name: "Decanoyl-CoA:acetyl-CoA C-acyltransferase"
       - metabolites: !!omap
           - MAM00868m: -1
           - MAM01261m: 1
@@ -98942,7 +98952,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03142"
-      - name: ""
+      - name: "decanoyl-CoA:electron-transfer flavoprotein 2,3-oxidoreductase"
       - metabolites: !!omap
           - MAM00039m: 1
           - MAM01650m: -1
@@ -98959,7 +98969,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03143"
-      - name: ""
+      - name: "(S)-Hydroxydecanoyl-CoA hydro-lyase"
       - metabolites: !!omap
           - MAM00039m: -1
           - MAM00181m: 1
@@ -98975,7 +98985,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03144"
-      - name: ""
+      - name: "(S)-hydroxydecanoyl-CoA:NAD+ oxidoreductase"
       - metabolites: !!omap
           - MAM00181m: -1
           - MAM00858m: 1
@@ -98993,7 +99003,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03146"
-      - name: ""
+      - name: "Octanoyl-CoA:acetyl-CoA C-acyltransferase"
       - metabolites: !!omap
           - MAM00858m: -1
           - MAM01261m: 1
@@ -99010,7 +99020,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03149"
-      - name: ""
+      - name: "octanoyl-CoA:electron-transfer flavoprotein 2-oxidoreductase"
       - metabolites: !!omap
           - MAM00059m: 1
           - MAM01802m: -1
@@ -99027,7 +99037,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03150"
-      - name: ""
+      - name: "(S)-Hydroxyoctanoyl-CoA hydro-lyase"
       - metabolites: !!omap
           - MAM00059m: -1
           - MAM00183m: 1
@@ -99043,7 +99053,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03151"
-      - name: ""
+      - name: "(S)-hydroxyoctanoyl-CoA:NAD+ oxidoreductase"
       - metabolites: !!omap
           - MAM00183m: -1
           - MAM00892m: 1
@@ -99061,7 +99071,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03153"
-      - name: ""
+      - name: "Hexanoyl-CoA:acetyl-CoA C-acyltransferase"
       - metabolites: !!omap
           - MAM00892m: -1
           - MAM01261m: 1
@@ -99078,7 +99088,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03156"
-      - name: ""
+      - name: "hexanoyl-CoA:electron-transfer flavoprotein 2,3-oxidoreductase"
       - metabolites: !!omap
           - MAM00053m: 1
           - MAM01802m: -1
@@ -99095,7 +99105,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03157"
-      - name: ""
+      - name: "(S)-Hydroxyhexanoyl-CoA hydro-lyase"
       - metabolites: !!omap
           - MAM00053m: -1
           - MAM00182m: 1
@@ -99111,7 +99121,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03158"
-      - name: ""
+      - name: "(S)-hydroxyhexanoyl-CoA:NAD+ oxidoreductase"
       - metabolites: !!omap
           - MAM00182m: -1
           - MAM00882m: 1
@@ -99129,7 +99139,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03160"
-      - name: ""
+      - name: "butanoyl-CoA:acetyl-CoA C-butanoyltransferase"
       - metabolites: !!omap
           - MAM00882m: -1
           - MAM01261m: 1
@@ -100247,7 +100257,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03205"
-      - name: ""
+      - name: "acetyl-CoA:propanoyl-CoA 2-C-acetyltransferase"
       - metabolites: !!omap
           - MAM00899m: -1
           - MAM01261m: 1
@@ -100582,7 +100592,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03272"
-      - name: ""
+      - name: "3-cis-Dodecenoyl-CoA delta3-cis-delta2-trans-isomerase"
       - metabolites: !!omap
           - MAM00042m: -1
           - MAM00099m: 1
@@ -101073,7 +101083,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03239"
-      - name: ""
+      - name: "3-cis-Dodecenoyl-CoA delta3-cis-delta2-trans-isomerase"
       - metabolites: !!omap
           - MAM00042m: -1
           - MAM00088m: 1
@@ -101292,7 +101302,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03288"
-      - name: ""
+      - name: "cis,cis-3,6-Dodecadienoyl-CoA delta3-cis-delta2-trans-isomerase"
       - metabolites: !!omap
           - MAM01575m: -1
           - MAM03021m: 1
@@ -101915,7 +101925,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR01573"
-      - name: ""
+      - name: "acetyl-CoA:acetoacetyl-CoA C-acetyltransferase (thioester-hydrolysing, carboxymethyl-forming)"
       - metabolites: !!omap
           - MAM01255m: -1
           - MAM01261m: -1
@@ -101934,7 +101944,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR06901"
-      - name: ""
+      - name: "(2E,6E)-farnesyl-diphosphate:isopentenyl-diphosphate farnesyltranstransferase (adding 7 isopentenyl units)"
       - metabolites: !!omap
           - MAM01316c: 1
           - MAM01806c: -1
@@ -101951,7 +101961,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR06903"
-      - name: ""
+      - name: "solanesyl-diphosphate:4-hydroxybenzoate nonaprenyltransferase"
       - metabolites: !!omap
           - MAM00767m: 1
           - MAM00995m: -1
@@ -102116,7 +102126,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR07166"
-      - name: ""
+      - name: "farnesyl-diphosphate:protein-cysteine farnesyltransferase"
       - metabolites: !!omap
           - MAM00200c: -1
           - MAM01806c: -1
@@ -102133,7 +102143,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR07167"
-      - name: ""
+      - name: "CAAX protease"
       - metabolites: !!omap
           - MAM00194c: 1
           - MAM02040c: -1
@@ -102150,7 +102160,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR07168"
-      - name: ""
+      - name: "S-Adenosyl-L-methionine:protein-C-terminal-S-farnesyl-L-cysteine O-methyltransferase"
       - metabolites: !!omap
           - MAM00194c: -1
           - MAM00195c: 1
@@ -102184,7 +102194,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR01644"
-      - name: ""
+      - name: "(24R,25R)-3alpha,7alpha,12alpha,24-tetrahydroxy-5beta-cholestanoyl-CoA hydro-lyase [(24E)-3alpha,7alpha,12alpha-trihydroxy-5beta-cholest-24-enoyl-CoA-forming]"
       - metabolites: !!omap
           - MAM00036m: 1
           - MAM00749m: -1
@@ -102200,7 +102210,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR01651"
-      - name: ""
+      - name: "(24R,25R)-3alpha,7alpha,12alpha,24-tetrahydroxy-5beta-cholestanoyl-CoA:NAD+ oxidoreductase"
       - metabolites: !!omap
           - MAM00036m: -1
           - MAM00748m: 1
@@ -102306,7 +102316,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR01949"
-      - name: ""
+      - name: "11-Deoxycortisol delta5-delat4-isomerase"
       - metabolites: !!omap
           - MAM00295c: 1
           - MAM00406c: -1
@@ -102324,7 +102334,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR01951"
-      - name: ""
+      - name: "Cortisol delta5-delat4-isomerase"
       - metabolites: !!omap
           - MAM00283c: -1
           - MAM01615c: 1
@@ -102342,7 +102352,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR02002"
-      - name: ""
+      - name: "5alpha-pregnane-3,20-dione:NADP+ delta4-oxidoreductase"
       - metabolites: !!omap
           - MAM01072c: -1
           - MAM02039c: 1
@@ -102360,7 +102370,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR02003"
-      - name: ""
+      - name: "3alpha-hydroxy-5alpha-pregnan-20-one:NADP+ 3-oxidoreductase (A-specific)"
       - metabolites: !!omap
           - MAM00759c: -1
           - MAM01072c: 1
@@ -102396,7 +102406,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04766"
-      - name: ""
+      - name: "UDPglucuronate beta-D-glucuronosyltransferase(acceptor-unspecific)"
       - metabolites: !!omap
           - MAM01396r: -1
           - MAM01397r: 1
@@ -102486,7 +102496,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR07648"
-      - name: ""
+      - name: "UDPglucuronate beta-D-glucuronosyltransferase(acceptor-unspecific)"
       - metabolites: !!omap
           - MAM01786r: 1
           - MAM01787r: -1
@@ -102503,7 +102513,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR07930"
-      - name: ""
+      - name: "Pregnenolone:NAD+ 3-oxidoreductase"
       - metabolites: !!omap
           - MAM02039c: 1
           - MAM02552c: -1
@@ -102521,7 +102531,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR07931"
-      - name: ""
+      - name: "Pregnenolone:NAD+ 3-oxidoreductase"
       - metabolites: !!omap
           - MAM02039r: 1
           - MAM02552r: -1
@@ -102539,7 +102549,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR07939"
-      - name: ""
+      - name: "17alpha-Hydroxypregnenolone:NAD+ 3-oxidoreductase"
       - metabolites: !!omap
           - MAM00408r: -1
           - MAM00409r: 1
@@ -102597,7 +102607,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR07943"
-      - name: ""
+      - name: "Cortisol:NAD+ 11-oxidoreductase"
       - metabolites: !!omap
           - MAM01615r: 1
           - MAM01616r: -1
@@ -102615,7 +102625,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR07954"
-      - name: ""
+      - name: "3beta-Hydroxyandrost-5-en-17-one:NAD+ 3-oxidoreductase/delta5-delta-4 isomerase"
       - metabolites: !!omap
           - MAM00971r: 1
           - MAM01660r: -1
@@ -102633,7 +102643,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR07955"
-      - name: ""
+      - name: "testosterone:NAD+ 17-oxidoreductase"
       - metabolites: !!omap
           - MAM00971r: -1
           - MAM02039r: -1
@@ -102691,7 +102701,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR07959"
-      - name: ""
+      - name: "17beta-hydroxysteroid UDP-glucuronosyltransferase"
       - metabolites: !!omap
           - MAM02967r: 1
           - MAM02969r: -1
@@ -102708,7 +102718,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR07962"
-      - name: ""
+      - name: "UDPglucuronate beta-D-glucuronosyltransferase(acceptor-unspecific)"
       - metabolites: !!omap
           - MAM01790r: -1
           - MAM01795r: 1
@@ -102725,7 +102735,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR07965"
-      - name: ""
+      - name: "UDPglucuronate beta-D-glucuronosyltransferase(acceptor-unspecific)"
       - metabolites: !!omap
           - MAM01338r: -1
           - MAM01339r: 1
@@ -102742,7 +102752,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR07968"
-      - name: ""
+      - name: "Estradiol-17beta:NAD+ 17-oxidoreductase"
       - metabolites: !!omap
           - MAM01787r: 1
           - MAM01790r: -1
@@ -102816,7 +102826,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR07973"
-      - name: ""
+      - name: "17alpha-Hydroxypregnenolone:NAD+ 3-oxidoreductase"
       - metabolites: !!omap
           - MAM00408c: -1
           - MAM00409c: 1
@@ -102852,7 +102862,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR07976"
-      - name: ""
+      - name: "20alpha-Hydroxy-4-pregnen-3-one:NADP+ 20-oxidoreductase"
       - metabolites: !!omap
           - MAM00580c: 1
           - MAM02039c: -1
@@ -102888,7 +102898,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR07980"
-      - name: ""
+      - name: "UDPglucuronate beta-D-glucuronosyltransferase(acceptor-unspecific)"
       - metabolites: !!omap
           - MAM01799r: 1
           - MAM01800r: -1
@@ -102905,7 +102915,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR07984"
-      - name: ""
+      - name: "UDPglucuronate beta-D-glucuronosyltransferase(acceptor-unspecific)"
       - metabolites: !!omap
           - MAM00402r: 1
           - MAM01788r: -1
@@ -102939,7 +102949,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR01952"
-      - name: ""
+      - name: "3'-phosphoadenylyl-sulfate:pregnenolone sulfotransferase"
       - metabolites: !!omap
           - MAM02039c: 1
           - MAM02681c: 1
@@ -103015,7 +103025,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR01967"
-      - name: ""
+      - name: "dehydroepiandrosterone:NAD+ oxidoreductase"
       - metabolites: !!omap
           - MAM01075c: 1
           - MAM01660c: -1
@@ -103033,7 +103043,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR01968"
-      - name: ""
+      - name: "dehydroepiandrosterone:NAD+ oxidoreductase"
       - metabolites: !!omap
           - MAM01075r: 1
           - MAM01660r: -1
@@ -103051,7 +103061,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR01969"
-      - name: ""
+      - name: "3'-phosphoadenylylsulfate:alcohol sulfotransferase"
       - metabolites: !!omap
           - MAM01659c: 1
           - MAM01660c: -1
@@ -103105,7 +103115,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR01973"
-      - name: ""
+      - name: "testosterone:NADP+ 17-oxidoreductase"
       - metabolites: !!omap
           - MAM00971c: -1
           - MAM02039c: -1
@@ -103123,7 +103133,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR01974"
-      - name: ""
+      - name: "testosterone:NADP+ 17-oxidoreductase"
       - metabolites: !!omap
           - MAM00971r: -1
           - MAM02039r: -1
@@ -103141,7 +103151,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR01976"
-      - name: ""
+      - name: "dihydrotestosterone:NADP+ delta4-oxidoreductase"
       - metabolites: !!omap
           - MAM01069c: 1
           - MAM02039c: -1
@@ -103159,7 +103169,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR01977"
-      - name: ""
+      - name: "dihydrotestosterone:NADP+ delta4-oxidoreductase"
       - metabolites: !!omap
           - MAM01069r: 1
           - MAM02039r: -1
@@ -103177,7 +103187,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR01978"
-      - name: ""
+      - name: "3beta-Hydroxysteroid:NADP+ oxidoreductase"
       - metabolites: !!omap
           - MAM01065c: 1
           - MAM01069c: -1
@@ -103195,7 +103205,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR01982"
-      - name: ""
+      - name: "17alpha-Hydroxypregnenolone:NAD+ 3-oxidoreductase"
       - metabolites: !!omap
           - MAM00408c: -1
           - MAM02039c: 1
@@ -103228,7 +103238,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR02014"
-      - name: ""
+      - name: "5alpha-androstane-3,17-dione:NADP+ delta4-oxidoreductase"
       - metabolites: !!omap
           - MAM00971c: -1
           - MAM01064c: 1
@@ -103246,7 +103256,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR02015"
-      - name: ""
+      - name: "5alpha-androstane-3,17-dione:NADP+ delta4-oxidoreductase"
       - metabolites: !!omap
           - MAM00971r: -1
           - MAM01064r: 1
@@ -103264,7 +103274,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR02016"
-      - name: ""
+      - name: "Androsterone:NAD+ oxidoreductase"
       - metabolites: !!omap
           - MAM01064c: -1
           - MAM01338c: 1
@@ -103282,7 +103292,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR02017"
-      - name: ""
+      - name: "Androsterone:NAD+ oxidoreductase"
       - metabolites: !!omap
           - MAM01064r: -1
           - MAM01338r: 1
@@ -103300,7 +103310,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR02018"
-      - name: ""
+      - name: "Androsterone:NADP+ oxidoreductase"
       - metabolites: !!omap
           - MAM01064c: -1
           - MAM01338c: 1
@@ -103318,7 +103328,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR02019"
-      - name: ""
+      - name: "Androsterone:NADP+ oxidoreductase"
       - metabolites: !!omap
           - MAM01064r: -1
           - MAM01338r: 1
@@ -103372,7 +103382,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR01440"
-      - name: ""
+      - name: "(R)-Mevalonate:NADP+ oxidoreductase (CoA acylating)"
       - metabolites: !!omap
           - MAM00167c: 1
           - MAM01597c: 1
@@ -103391,7 +103401,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR01445"
-      - name: ""
+      - name: "ATP:(R)-mevalonate 5-phosphotransferase"
       - metabolites: !!omap
           - MAM00165c: 1
           - MAM00167c: -1
@@ -103409,7 +103419,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR01448"
-      - name: ""
+      - name: "ATP:(R)-5-phosphomevalonate phosphotransferase"
       - metabolites: !!omap
           - MAM00164c: -1
           - MAM00165c: 1
@@ -103426,7 +103436,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR01454"
-      - name: ""
+      - name: "isopentenyl-diphosphate Delta3-Delta2-isomerase"
       - metabolites: !!omap
           - MAM01706c: 1
           - MAM02187c: -1
@@ -103441,7 +103451,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR01484"
-      - name: ""
+      - name: "4,4-dimethyl-5a-cholesta-8,24-dien-3b-ol:NADP+ D14-oxidoreductase"
       - metabolites: !!omap
           - MAM00367c: 1
           - MAM00941c: -1
@@ -103459,7 +103469,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR01490"
-      - name: ""
+      - name: "14-demethyllanosterol,ferrocytochrome-b5:oxygen oxidoreductase (hydroxylating)"
       - metabolites: !!omap
           - MAM00367c: -1
           - MAM00961c: 1
@@ -103736,7 +103746,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR01437"
-      - name: ""
+      - name: "acetyl-CoA:acetoacetyl-CoA C-acetyltransferase (thioester-hydrolysing, carboxymethyl-forming)"
       - metabolites: !!omap
           - MAM01255c: -1
           - MAM01261c: -1
@@ -103755,7 +103765,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR01451"
-      - name: ""
+      - name: "ATP:(R)-5-diphosphomevalonate carboxy-lyase (adding ATP"
       - metabolites: !!omap
           - MAM00164c: -1
           - MAM01285c: 1
@@ -103774,7 +103784,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR01457"
-      - name: ""
+      - name: "Dimethylallyl-diphosphate:isopentenyl-diphosphate dimethylallyltranstransferase"
       - metabolites: !!omap
           - MAM01706c: -1
           - MAM01953c: 1
@@ -103791,7 +103801,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR01460"
-      - name: ""
+      - name: "Geranyl-diphosphate:isopentenyl-diphosphate geranyltrans-transferase"
       - metabolites: !!omap
           - MAM01806c: 1
           - MAM01953c: -1
@@ -103828,7 +103838,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR01577"
-      - name: ""
+      - name: "(S)-3-hydroxy-3-methylglutaryl-CoA acetoacetate-lyase (acetyl-CoA-forming)"
       - metabolites: !!omap
           - MAM01253m: 1
           - MAM01261m: 1
@@ -103844,7 +103854,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03105"
-      - name: ""
+      - name: "acetyl-CoA:acetyl-CoA C-acetyltransferase"
       - metabolites: !!omap
           - MAM01255x: -1
           - MAM01261x: 2
@@ -103860,7 +103870,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04630"
-      - name: ""
+      - name: "(R)-Mevalonate:NADP+ oxidoreductase (CoA acylating)"
       - metabolites: !!omap
           - MAM00167x: 1
           - MAM01597x: 1
@@ -103935,7 +103945,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR02032"
-      - name: ""
+      - name: "19-hydroxyandrostenedione,NADPH---hemoprotein reductase:oxygen 19-oxidoreductase"
       - metabolites: !!omap
           - MAM00431c: 1
           - MAM00971c: -1
@@ -103971,7 +103981,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR02034"
-      - name: ""
+      - name: "19-oxoandrostenedione,NADPH---hemoprotein reductase:oxygen oxidoreductase (aromatizing, formate-forming)"
       - metabolites: !!omap
           - MAM00433c: -1
           - MAM01790c: 1
@@ -103991,7 +104001,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR02036"
-      - name: ""
+      - name: "Estradiol-17beta:NADP+ 17-oxidoreductase"
       - metabolites: !!omap
           - MAM01787c: 1
           - MAM01790c: -1
@@ -104009,7 +104019,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR02037"
-      - name: ""
+      - name: "3'-Phosphoadenylylsulfate:estrone 3-sulfotransferase"
       - metabolites: !!omap
           - MAM01789c: 1
           - MAM01790c: -1
@@ -104973,7 +104983,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03538"
-      - name: ""
+      - name: "Steryl-ester acylhydrolase"
       - metabolites: !!omap
           - MAM01450l: 1
           - MAM01498l: -1
@@ -104991,7 +105001,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03539"
-      - name: ""
+      - name: "Steryl-ester acylhydrolase"
       - metabolites: !!omap
           - MAM01450l: 1
           - MAM01510l: -1
@@ -105009,7 +105019,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03540"
-      - name: ""
+      - name: "Steryl-ester acylhydrolase"
       - metabolites: !!omap
           - MAM01450l: 1
           - MAM01501l: -1
@@ -105027,7 +105037,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03541"
-      - name: ""
+      - name: "Steryl-ester acylhydrolase"
       - metabolites: !!omap
           - MAM00128l: 1
           - MAM01450l: 1
@@ -105045,7 +105055,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03542"
-      - name: ""
+      - name: "Steryl-ester acylhydrolase"
       - metabolites: !!omap
           - MAM00117l: 1
           - MAM01450l: 1
@@ -105063,7 +105073,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03543"
-      - name: ""
+      - name: "Steryl-ester acylhydrolase"
       - metabolites: !!omap
           - MAM01450l: 1
           - MAM01470l: -1
@@ -105081,7 +105091,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03544"
-      - name: ""
+      - name: "Steryl-ester acylhydrolase"
       - metabolites: !!omap
           - MAM01450l: 1
           - MAM01506l: -1
@@ -105099,7 +105109,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03545"
-      - name: ""
+      - name: "Steryl-ester acylhydrolase"
       - metabolites: !!omap
           - MAM01450l: 1
           - MAM01504l: -1
@@ -105117,7 +105127,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03546"
-      - name: ""
+      - name: "Steryl-ester acylhydrolase"
       - metabolites: !!omap
           - MAM01197l: 1
           - MAM01450l: 1
@@ -105135,7 +105145,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03547"
-      - name: ""
+      - name: "Steryl-ester acylhydrolase"
       - metabolites: !!omap
           - MAM01450l: 1
           - MAM01505l: -1
@@ -105153,7 +105163,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03548"
-      - name: ""
+      - name: "Steryl-ester acylhydrolase"
       - metabolites: !!omap
           - MAM01450l: 1
           - MAM01495l: -1
@@ -105171,7 +105181,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03549"
-      - name: ""
+      - name: "Steryl-ester acylhydrolase"
       - metabolites: !!omap
           - MAM00003l: 1
           - MAM01450l: 1
@@ -105189,7 +105199,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03550"
-      - name: ""
+      - name: "Steryl-ester acylhydrolase"
       - metabolites: !!omap
           - MAM01238l: 1
           - MAM01450l: 1
@@ -105207,7 +105217,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03551"
-      - name: ""
+      - name: "Steryl-ester acylhydrolase"
       - metabolites: !!omap
           - MAM01450l: 1
           - MAM01507l: -1
@@ -105225,7 +105235,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03552"
-      - name: ""
+      - name: "Steryl-ester acylhydrolase"
       - metabolites: !!omap
           - MAM01450l: 1
           - MAM01503l: -1
@@ -105243,7 +105253,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03553"
-      - name: ""
+      - name: "Steryl-ester acylhydrolase"
       - metabolites: !!omap
           - MAM00019l: 1
           - MAM01450l: 1
@@ -105261,7 +105271,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03554"
-      - name: ""
+      - name: "Steryl-ester acylhydrolase"
       - metabolites: !!omap
           - MAM01450l: 1
           - MAM01489l: -1
@@ -105279,7 +105289,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03555"
-      - name: ""
+      - name: "Steryl-ester acylhydrolase"
       - metabolites: !!omap
           - MAM01450l: 1
           - MAM01486l: -1
@@ -105297,7 +105307,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03556"
-      - name: ""
+      - name: "Steryl-ester acylhydrolase"
       - metabolites: !!omap
           - MAM00115l: 1
           - MAM01450l: 1
@@ -105315,7 +105325,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03557"
-      - name: ""
+      - name: "Steryl-ester acylhydrolase"
       - metabolites: !!omap
           - MAM00104l: 1
           - MAM01450l: 1
@@ -105333,7 +105343,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03558"
-      - name: ""
+      - name: "Steryl-ester acylhydrolase"
       - metabolites: !!omap
           - MAM01450l: 1
           - MAM01502l: -1
@@ -105351,7 +105361,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03559"
-      - name: ""
+      - name: "Steryl-ester acylhydrolase"
       - metabolites: !!omap
           - MAM01450l: 1
           - MAM01492l: -1
@@ -105369,7 +105379,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03560"
-      - name: ""
+      - name: "Steryl-ester acylhydrolase"
       - metabolites: !!omap
           - MAM00017l: 1
           - MAM01450l: 1
@@ -105387,7 +105397,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03561"
-      - name: ""
+      - name: "Steryl-ester acylhydrolase"
       - metabolites: !!omap
           - MAM01450l: 1
           - MAM01458l: -1
@@ -105405,7 +105415,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03562"
-      - name: ""
+      - name: "Steryl-ester acylhydrolase"
       - metabolites: !!omap
           - MAM01235l: 1
           - MAM01450l: 1
@@ -105423,7 +105433,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03563"
-      - name: ""
+      - name: "Steryl-ester acylhydrolase"
       - metabolites: !!omap
           - MAM01207l: 1
           - MAM01450l: 1
@@ -105441,7 +105451,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03564"
-      - name: ""
+      - name: "Steryl-ester acylhydrolase"
       - metabolites: !!omap
           - MAM01450l: 1
           - MAM01469l: -1
@@ -105459,7 +105469,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03565"
-      - name: ""
+      - name: "Steryl-ester acylhydrolase"
       - metabolites: !!omap
           - MAM01450l: 1
           - MAM01494l: -1
@@ -105477,7 +105487,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03566"
-      - name: ""
+      - name: "Steryl-ester acylhydrolase"
       - metabolites: !!omap
           - MAM01373l: 1
           - MAM01450l: 1
@@ -105495,7 +105505,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03567"
-      - name: ""
+      - name: "Steryl-ester acylhydrolase"
       - metabolites: !!omap
           - MAM01450l: 1
           - MAM01462l: -1
@@ -105513,7 +105523,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03568"
-      - name: ""
+      - name: "Steryl-ester acylhydrolase"
       - metabolites: !!omap
           - MAM01450l: 1
           - MAM01457l: -1
@@ -105531,7 +105541,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03569"
-      - name: ""
+      - name: "Steryl-ester acylhydrolase"
       - metabolites: !!omap
           - MAM01450l: 1
           - MAM01509l: -1
@@ -105549,7 +105559,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03570"
-      - name: ""
+      - name: "Steryl-ester acylhydrolase"
       - metabolites: !!omap
           - MAM01450l: 1
           - MAM01508l: -1
@@ -105567,7 +105577,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03571"
-      - name: ""
+      - name: "Steryl-ester acylhydrolase"
       - metabolites: !!omap
           - MAM01450l: 1
           - MAM01465l: -1
@@ -105585,7 +105595,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03572"
-      - name: ""
+      - name: "Steryl-ester acylhydrolase"
       - metabolites: !!omap
           - MAM01432l: 1
           - MAM01450l: 1
@@ -105603,7 +105613,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03573"
-      - name: ""
+      - name: "Steryl-ester acylhydrolase"
       - metabolites: !!omap
           - MAM01450l: 1
           - MAM01497l: -1
@@ -105621,7 +105631,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03574"
-      - name: ""
+      - name: "Steryl-ester acylhydrolase"
       - metabolites: !!omap
           - MAM01450l: 1
           - MAM01500l: -1
@@ -105639,7 +105649,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03575"
-      - name: ""
+      - name: "Steryl-ester acylhydrolase"
       - metabolites: !!omap
           - MAM01450l: 1
           - MAM01473l: -1
@@ -105657,7 +105667,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03576"
-      - name: ""
+      - name: "Steryl-ester acylhydrolase"
       - metabolites: !!omap
           - MAM01450l: 1
           - MAM01480l: -1
@@ -105675,7 +105685,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03577"
-      - name: ""
+      - name: "Steryl-ester acylhydrolase"
       - metabolites: !!omap
           - MAM01450l: 1
           - MAM01468l: -1
@@ -105693,7 +105703,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03578"
-      - name: ""
+      - name: "Steryl-ester acylhydrolase"
       - metabolites: !!omap
           - MAM01450l: 1
           - MAM01475l: -1
@@ -105711,7 +105721,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03579"
-      - name: ""
+      - name: "Steryl-ester acylhydrolase"
       - metabolites: !!omap
           - MAM00135l: 1
           - MAM01450l: 1
@@ -105729,7 +105739,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03580"
-      - name: ""
+      - name: "Steryl-ester acylhydrolase"
       - metabolites: !!omap
           - MAM00114l: 1
           - MAM01450l: 1
@@ -105747,7 +105757,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03581"
-      - name: ""
+      - name: "Steryl-ester acylhydrolase"
       - metabolites: !!omap
           - MAM01450l: 1
           - MAM01466l: -1
@@ -105765,7 +105775,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03582"
-      - name: ""
+      - name: "Steryl-ester acylhydrolase"
       - metabolites: !!omap
           - MAM00010l: 1
           - MAM01450l: 1
@@ -105783,7 +105793,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03583"
-      - name: ""
+      - name: "Steryl-ester acylhydrolase"
       - metabolites: !!omap
           - MAM00341l: 1
           - MAM01450l: 1
@@ -105801,7 +105811,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03584"
-      - name: ""
+      - name: "Steryl-ester acylhydrolase"
       - metabolites: !!omap
           - MAM00260l: 1
           - MAM01450l: 1
@@ -105819,7 +105829,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03585"
-      - name: ""
+      - name: "Steryl-ester acylhydrolase"
       - metabolites: !!omap
           - MAM00315l: 1
           - MAM01450l: 1
@@ -105837,7 +105847,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03586"
-      - name: ""
+      - name: "Steryl-ester acylhydrolase"
       - metabolites: !!omap
           - MAM01450l: 1
           - MAM01499l: -1
@@ -105855,7 +105865,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03587"
-      - name: ""
+      - name: "Steryl-ester acylhydrolase"
       - metabolites: !!omap
           - MAM01450l: 1
           - MAM01493l: -1
@@ -105873,7 +105883,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03588"
-      - name: ""
+      - name: "Steryl-ester acylhydrolase"
       - metabolites: !!omap
           - MAM01450l: 1
           - MAM01490l: -1
@@ -105891,7 +105901,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03589"
-      - name: ""
+      - name: "Steryl-ester acylhydrolase"
       - metabolites: !!omap
           - MAM01362l: 1
           - MAM01450l: 1
@@ -105909,7 +105919,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03590"
-      - name: ""
+      - name: "Steryl-ester acylhydrolase"
       - metabolites: !!omap
           - MAM01291l: 1
           - MAM01450l: 1
@@ -105927,7 +105937,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03591"
-      - name: ""
+      - name: "Steryl-ester acylhydrolase"
       - metabolites: !!omap
           - MAM00132l: 1
           - MAM01450l: 1
@@ -105945,7 +105955,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03592"
-      - name: ""
+      - name: "Steryl-ester acylhydrolase"
       - metabolites: !!omap
           - MAM00111l: 1
           - MAM01450l: 1
@@ -105963,7 +105973,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03593"
-      - name: ""
+      - name: "Steryl-ester acylhydrolase"
       - metabolites: !!omap
           - MAM00094l: 1
           - MAM01450l: 1
@@ -105981,7 +105991,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03594"
-      - name: ""
+      - name: "Steryl-ester acylhydrolase"
       - metabolites: !!omap
           - MAM00008l: 1
           - MAM01450l: 1
@@ -105999,7 +106009,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03595"
-      - name: ""
+      - name: "Steryl-ester acylhydrolase"
       - metabolites: !!omap
           - MAM00021l: 1
           - MAM01450l: 1
@@ -106017,7 +106027,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03596"
-      - name: ""
+      - name: "Steryl-ester acylhydrolase"
       - metabolites: !!omap
           - MAM00265l: 1
           - MAM01450l: 1
@@ -106108,7 +106118,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03625"
-      - name: ""
+      - name: "Acyl-CoA:cholesterol O-acyltransferase"
       - metabolites: !!omap
           - MAM01450r: -1
           - MAM01498r: 1
@@ -106125,7 +106135,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03626"
-      - name: ""
+      - name: "Acyl-CoA:cholesterol O-acyltransferase"
       - metabolites: !!omap
           - MAM01450r: -1
           - MAM01510r: 1
@@ -106142,7 +106152,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03627"
-      - name: ""
+      - name: "Acyl-CoA:cholesterol O-acyltransferase"
       - metabolites: !!omap
           - MAM01450r: -1
           - MAM01501r: 1
@@ -106159,7 +106169,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03628"
-      - name: ""
+      - name: "Acyl-CoA:cholesterol O-acyltransferase"
       - metabolites: !!omap
           - MAM00129r: -1
           - MAM01450r: -1
@@ -106176,7 +106186,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03629"
-      - name: ""
+      - name: "Acyl-CoA:cholesterol O-acyltransferase"
       - metabolites: !!omap
           - MAM00118r: -1
           - MAM01450r: -1
@@ -106193,7 +106203,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03630"
-      - name: ""
+      - name: "Acyl-CoA:cholesterol O-acyltransferase"
       - metabolites: !!omap
           - MAM01141r: -1
           - MAM01450r: -1
@@ -106210,7 +106220,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03631"
-      - name: ""
+      - name: "Acyl-CoA:cholesterol O-acyltransferase"
       - metabolites: !!omap
           - MAM01450r: -1
           - MAM01506r: 1
@@ -106227,7 +106237,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03632"
-      - name: ""
+      - name: "Acyl-CoA:cholesterol O-acyltransferase"
       - metabolites: !!omap
           - MAM01450r: -1
           - MAM01504r: 1
@@ -106244,7 +106254,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03633"
-      - name: ""
+      - name: "Acyl-CoA:cholesterol O-acyltransferase"
       - metabolites: !!omap
           - MAM01191r: -1
           - MAM01450r: -1
@@ -106261,7 +106271,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03634"
-      - name: ""
+      - name: "Acyl-CoA:cholesterol O-acyltransferase"
       - metabolites: !!omap
           - MAM01450r: -1
           - MAM01505r: 1
@@ -106278,7 +106288,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03635"
-      - name: ""
+      - name: "Acyl-CoA:cholesterol O-acyltransferase"
       - metabolites: !!omap
           - MAM01450r: -1
           - MAM01495r: 1
@@ -106295,7 +106305,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03636"
-      - name: ""
+      - name: "Acyl-CoA:cholesterol O-acyltransferase"
       - metabolites: !!omap
           - MAM00004r: -1
           - MAM01450r: -1
@@ -106312,7 +106322,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03637"
-      - name: ""
+      - name: "Acyl-CoA:cholesterol O-acyltransferase"
       - metabolites: !!omap
           - MAM01237r: -1
           - MAM01450r: -1
@@ -106329,7 +106339,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03638"
-      - name: ""
+      - name: "Acyl-CoA:cholesterol O-acyltransferase"
       - metabolites: !!omap
           - MAM01450r: -1
           - MAM01507r: 1
@@ -106346,7 +106356,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03639"
-      - name: ""
+      - name: "Acyl-CoA:cholesterol O-acyltransferase"
       - metabolites: !!omap
           - MAM00020r: -1
           - MAM01450r: -1
@@ -106363,7 +106373,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03640"
-      - name: ""
+      - name: "Acyl-CoA:cholesterol O-acyltransferase"
       - metabolites: !!omap
           - MAM01450r: -1
           - MAM01489r: 1
@@ -106380,7 +106390,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03641"
-      - name: ""
+      - name: "Acyl-CoA:cholesterol O-acyltransferase"
       - metabolites: !!omap
           - MAM01450r: -1
           - MAM01503r: 1
@@ -106397,7 +106407,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03642"
-      - name: ""
+      - name: "Acyl-CoA:cholesterol O-acyltransferase"
       - metabolites: !!omap
           - MAM00127r: -1
           - MAM01450r: -1
@@ -106414,7 +106424,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03643"
-      - name: ""
+      - name: "Acyl-CoA:cholesterol O-acyltransferase"
       - metabolites: !!omap
           - MAM00116r: -1
           - MAM01450r: -1
@@ -106431,7 +106441,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03644"
-      - name: ""
+      - name: "Acyl-CoA:cholesterol O-acyltransferase"
       - metabolites: !!omap
           - MAM00106r: -1
           - MAM01450r: -1
@@ -106448,7 +106458,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03645"
-      - name: ""
+      - name: "Acyl-CoA:cholesterol O-acyltransferase"
       - metabolites: !!omap
           - MAM01450r: -1
           - MAM01502r: 1
@@ -106465,7 +106475,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03646"
-      - name: ""
+      - name: "Acyl-CoA:cholesterol O-acyltransferase"
       - metabolites: !!omap
           - MAM01450r: -1
           - MAM01492r: 1
@@ -106482,7 +106492,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03647"
-      - name: ""
+      - name: "Acyl-CoA:cholesterol O-acyltransferase"
       - metabolites: !!omap
           - MAM00018r: -1
           - MAM01450r: -1
@@ -106499,7 +106509,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03648"
-      - name: ""
+      - name: "Acyl-CoA:cholesterol O-acyltransferase"
       - metabolites: !!omap
           - MAM00007r: -1
           - MAM01450r: -1
@@ -106516,7 +106526,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03649"
-      - name: ""
+      - name: "Acyl-CoA:cholesterol O-acyltransferase"
       - metabolites: !!omap
           - MAM01236r: -1
           - MAM01450r: -1
@@ -106533,7 +106543,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03650"
-      - name: ""
+      - name: "Acyl-CoA:cholesterol O-acyltransferase"
       - metabolites: !!omap
           - MAM00123r: -1
           - MAM01450r: -1
@@ -106550,7 +106560,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03651"
-      - name: ""
+      - name: "Acyl-CoA:cholesterol O-acyltransferase"
       - metabolites: !!omap
           - MAM00101r: -1
           - MAM01450r: -1
@@ -106567,7 +106577,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03652"
-      - name: ""
+      - name: "Acyl-CoA:cholesterol O-acyltransferase"
       - metabolites: !!omap
           - MAM01450r: -1
           - MAM01494r: 1
@@ -106584,7 +106594,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03653"
-      - name: ""
+      - name: "Acyl-CoA:cholesterol O-acyltransferase"
       - metabolites: !!omap
           - MAM01450r: -1
           - MAM01491r: 1
@@ -106601,7 +106611,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03654"
-      - name: ""
+      - name: "Acyl-CoA:cholesterol O-acyltransferase"
       - metabolites: !!omap
           - MAM00016r: -1
           - MAM01450r: -1
@@ -106618,7 +106628,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03655"
-      - name: ""
+      - name: "Acyl-CoA:cholesterol O-acyltransferase"
       - metabolites: !!omap
           - MAM00006r: -1
           - MAM01450r: -1
@@ -106635,7 +106645,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03656"
-      - name: ""
+      - name: "Acyl-CoA:cholesterol O-acyltransferase"
       - metabolites: !!omap
           - MAM01450r: -1
           - MAM01509r: 1
@@ -106652,7 +106662,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03657"
-      - name: ""
+      - name: "Acyl-CoA:cholesterol O-acyltransferase"
       - metabolites: !!omap
           - MAM01450r: -1
           - MAM01508r: 1
@@ -106669,7 +106679,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03658"
-      - name: ""
+      - name: "Acyl-CoA:cholesterol O-acyltransferase"
       - metabolites: !!omap
           - MAM00025r: -1
           - MAM01450r: -1
@@ -106686,7 +106696,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03659"
-      - name: ""
+      - name: "Acyl-CoA:cholesterol O-acyltransferase"
       - metabolites: !!omap
           - MAM01450r: -1
           - MAM01496r: 1
@@ -106703,7 +106713,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03660"
-      - name: ""
+      - name: "Acyl-CoA:cholesterol O-acyltransferase"
       - metabolites: !!omap
           - MAM01450r: -1
           - MAM01497r: 1
@@ -106720,7 +106730,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03661"
-      - name: ""
+      - name: "Acyl-CoA:cholesterol O-acyltransferase"
       - metabolites: !!omap
           - MAM01450r: -1
           - MAM01500r: 1
@@ -106737,7 +106747,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03662"
-      - name: ""
+      - name: "Acyl-CoA:cholesterol O-acyltransferase"
       - metabolites: !!omap
           - MAM00108r: -1
           - MAM01450r: -1
@@ -106754,7 +106764,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03663"
-      - name: ""
+      - name: "Acyl-CoA:cholesterol O-acyltransferase"
       - metabolites: !!omap
           - MAM00125r: -1
           - MAM01450r: -1
@@ -106771,7 +106781,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03664"
-      - name: ""
+      - name: "Acyl-CoA:cholesterol O-acyltransferase"
       - metabolites: !!omap
           - MAM00103r: -1
           - MAM01450r: -1
@@ -106788,7 +106798,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03665"
-      - name: ""
+      - name: "Acyl-CoA:cholesterol O-acyltransferase"
       - metabolites: !!omap
           - MAM00121r: -1
           - MAM01450r: -1
@@ -106805,7 +106815,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03666"
-      - name: ""
+      - name: "Acyl-CoA:cholesterol O-acyltransferase"
       - metabolites: !!omap
           - MAM00134r: -1
           - MAM01450r: -1
@@ -106822,7 +106832,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03667"
-      - name: ""
+      - name: "Acyl-CoA:cholesterol O-acyltransferase"
       - metabolites: !!omap
           - MAM00113r: -1
           - MAM01450r: -1
@@ -106839,7 +106849,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03668"
-      - name: ""
+      - name: "Acyl-CoA:cholesterol O-acyltransferase"
       - metabolites: !!omap
           - MAM00095r: -1
           - MAM01450r: -1
@@ -106856,7 +106866,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03669"
-      - name: ""
+      - name: "Acyl-CoA:cholesterol O-acyltransferase"
       - metabolites: !!omap
           - MAM00012r: -1
           - MAM01450r: -1
@@ -106873,7 +106883,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03670"
-      - name: ""
+      - name: "Acyl-CoA:cholesterol O-acyltransferase"
       - metabolites: !!omap
           - MAM00343r: -1
           - MAM01450r: -1
@@ -106890,7 +106900,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03671"
-      - name: ""
+      - name: "Acyl-CoA:cholesterol O-acyltransferase"
       - metabolites: !!omap
           - MAM00262r: -1
           - MAM01450r: -1
@@ -106907,7 +106917,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03672"
-      - name: ""
+      - name: "Acyl-CoA:cholesterol O-acyltransferase"
       - metabolites: !!omap
           - MAM00317r: -1
           - MAM01450r: -1
@@ -106924,7 +106934,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03673"
-      - name: ""
+      - name: "Acyl-CoA:cholesterol O-acyltransferase"
       - metabolites: !!omap
           - MAM01450r: -1
           - MAM01499r: 1
@@ -106941,7 +106951,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03674"
-      - name: ""
+      - name: "Acyl-CoA:cholesterol O-acyltransferase"
       - metabolites: !!omap
           - MAM01450r: -1
           - MAM01493r: 1
@@ -106958,7 +106968,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03675"
-      - name: ""
+      - name: "Acyl-CoA:cholesterol O-acyltransferase"
       - metabolites: !!omap
           - MAM01450r: -1
           - MAM01490r: 1
@@ -106975,7 +106985,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03676"
-      - name: ""
+      - name: "Acyl-CoA:cholesterol O-acyltransferase"
       - metabolites: !!omap
           - MAM01364r: -1
           - MAM01450r: -1
@@ -106992,7 +107002,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03677"
-      - name: ""
+      - name: "Acyl-CoA:cholesterol O-acyltransferase"
       - metabolites: !!omap
           - MAM00119r: -1
           - MAM01450r: -1
@@ -107009,7 +107019,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03678"
-      - name: ""
+      - name: "Acyl-CoA:cholesterol O-acyltransferase"
       - metabolites: !!omap
           - MAM00131r: -1
           - MAM01450r: -1
@@ -107026,7 +107036,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03679"
-      - name: ""
+      - name: "Acyl-CoA:cholesterol O-acyltransferase"
       - metabolites: !!omap
           - MAM00110r: -1
           - MAM01450r: -1
@@ -107043,7 +107053,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03680"
-      - name: ""
+      - name: "Acyl-CoA:cholesterol O-acyltransferase"
       - metabolites: !!omap
           - MAM00093r: -1
           - MAM01450r: -1
@@ -107060,7 +107070,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03681"
-      - name: ""
+      - name: "Acyl-CoA:cholesterol O-acyltransferase"
       - metabolites: !!omap
           - MAM00009r: -1
           - MAM01450r: -1
@@ -107077,7 +107087,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03682"
-      - name: ""
+      - name: "Acyl-CoA:cholesterol O-acyltransferase"
       - metabolites: !!omap
           - MAM00023r: -1
           - MAM01450r: -1
@@ -107094,7 +107104,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03683"
-      - name: ""
+      - name: "Acyl-CoA:cholesterol O-acyltransferase"
       - metabolites: !!omap
           - MAM00264r: -1
           - MAM01450r: -1
@@ -107111,7 +107121,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03684"
-      - name: ""
+      - name: "Steryl-ester acylhydrolase"
       - metabolites: !!omap
           - MAM01450r: 1
           - MAM01498r: -1
@@ -107129,7 +107139,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03685"
-      - name: ""
+      - name: "Steryl-ester acylhydrolase"
       - metabolites: !!omap
           - MAM01450r: 1
           - MAM01510r: -1
@@ -107147,7 +107157,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03686"
-      - name: ""
+      - name: "Steryl-ester acylhydrolase"
       - metabolites: !!omap
           - MAM01450r: 1
           - MAM01501r: -1
@@ -107165,7 +107175,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03687"
-      - name: ""
+      - name: "Steryl-ester acylhydrolase"
       - metabolites: !!omap
           - MAM00128r: 1
           - MAM01450r: 1
@@ -107183,7 +107193,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03688"
-      - name: ""
+      - name: "Steryl-ester acylhydrolase"
       - metabolites: !!omap
           - MAM00117r: 1
           - MAM01450r: 1
@@ -107201,7 +107211,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03689"
-      - name: ""
+      - name: "Steryl-ester acylhydrolase"
       - metabolites: !!omap
           - MAM01450r: 1
           - MAM01470r: -1
@@ -107219,7 +107229,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03690"
-      - name: ""
+      - name: "Steryl-ester acylhydrolase"
       - metabolites: !!omap
           - MAM01450r: 1
           - MAM01506r: -1
@@ -107237,7 +107247,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03691"
-      - name: ""
+      - name: "Steryl-ester acylhydrolase"
       - metabolites: !!omap
           - MAM01450r: 1
           - MAM01504r: -1
@@ -107255,7 +107265,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03692"
-      - name: ""
+      - name: "Steryl-ester acylhydrolase"
       - metabolites: !!omap
           - MAM01197r: 1
           - MAM01450r: 1
@@ -107273,7 +107283,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03693"
-      - name: ""
+      - name: "Steryl-ester acylhydrolase"
       - metabolites: !!omap
           - MAM01450r: 1
           - MAM01505r: -1
@@ -107291,7 +107301,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03694"
-      - name: ""
+      - name: "Steryl-ester acylhydrolase"
       - metabolites: !!omap
           - MAM01450r: 1
           - MAM01495r: -1
@@ -107309,7 +107319,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03695"
-      - name: ""
+      - name: "Steryl-ester acylhydrolase"
       - metabolites: !!omap
           - MAM00003r: 1
           - MAM01450r: 1
@@ -107327,7 +107337,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03696"
-      - name: ""
+      - name: "Steryl-ester acylhydrolase"
       - metabolites: !!omap
           - MAM01238r: 1
           - MAM01450r: 1
@@ -107345,7 +107355,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03697"
-      - name: ""
+      - name: "Steryl-ester acylhydrolase"
       - metabolites: !!omap
           - MAM01450r: 1
           - MAM01507r: -1
@@ -107363,7 +107373,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03698"
-      - name: ""
+      - name: "Steryl-ester acylhydrolase"
       - metabolites: !!omap
           - MAM00019r: 1
           - MAM01450r: 1
@@ -107381,7 +107391,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03699"
-      - name: ""
+      - name: "Steryl-ester acylhydrolase"
       - metabolites: !!omap
           - MAM01450r: 1
           - MAM01489r: -1
@@ -107399,7 +107409,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03700"
-      - name: ""
+      - name: "Steryl-ester acylhydrolase"
       - metabolites: !!omap
           - MAM01450r: 1
           - MAM01503r: -1
@@ -107417,7 +107427,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03701"
-      - name: ""
+      - name: "Steryl-ester acylhydrolase"
       - metabolites: !!omap
           - MAM01450r: 1
           - MAM01486r: -1
@@ -107435,7 +107445,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03702"
-      - name: ""
+      - name: "Steryl-ester acylhydrolase"
       - metabolites: !!omap
           - MAM00115r: 1
           - MAM01450r: 1
@@ -107453,7 +107463,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03703"
-      - name: ""
+      - name: "Steryl-ester acylhydrolase"
       - metabolites: !!omap
           - MAM00104r: 1
           - MAM01450r: 1
@@ -107471,7 +107481,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03704"
-      - name: ""
+      - name: "Steryl-ester acylhydrolase"
       - metabolites: !!omap
           - MAM01450r: 1
           - MAM01502r: -1
@@ -107489,7 +107499,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03705"
-      - name: ""
+      - name: "Steryl-ester acylhydrolase"
       - metabolites: !!omap
           - MAM01450r: 1
           - MAM01492r: -1
@@ -107507,7 +107517,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03706"
-      - name: ""
+      - name: "Steryl-ester acylhydrolase"
       - metabolites: !!omap
           - MAM00017r: 1
           - MAM01450r: 1
@@ -107525,7 +107535,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03707"
-      - name: ""
+      - name: "Steryl-ester acylhydrolase"
       - metabolites: !!omap
           - MAM01450r: 1
           - MAM01458r: -1
@@ -107543,7 +107553,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03708"
-      - name: ""
+      - name: "Steryl-ester acylhydrolase"
       - metabolites: !!omap
           - MAM01235r: 1
           - MAM01450r: 1
@@ -107561,7 +107571,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03709"
-      - name: ""
+      - name: "Steryl-ester acylhydrolase"
       - metabolites: !!omap
           - MAM01207r: 1
           - MAM01450r: 1
@@ -107579,7 +107589,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03710"
-      - name: ""
+      - name: "Steryl-ester acylhydrolase"
       - metabolites: !!omap
           - MAM01450r: 1
           - MAM01469r: -1
@@ -107597,7 +107607,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03711"
-      - name: ""
+      - name: "Steryl-ester acylhydrolase"
       - metabolites: !!omap
           - MAM01450r: 1
           - MAM01494r: -1
@@ -107615,7 +107625,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03712"
-      - name: ""
+      - name: "Steryl-ester acylhydrolase"
       - metabolites: !!omap
           - MAM01373r: 1
           - MAM01450r: 1
@@ -107633,7 +107643,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03713"
-      - name: ""
+      - name: "Steryl-ester acylhydrolase"
       - metabolites: !!omap
           - MAM01450r: 1
           - MAM01462r: -1
@@ -107651,7 +107661,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03714"
-      - name: ""
+      - name: "Steryl-ester acylhydrolase"
       - metabolites: !!omap
           - MAM01450r: 1
           - MAM01457r: -1
@@ -107669,7 +107679,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03715"
-      - name: ""
+      - name: "Steryl-ester acylhydrolase"
       - metabolites: !!omap
           - MAM01450r: 1
           - MAM01509r: -1
@@ -107687,7 +107697,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03716"
-      - name: ""
+      - name: "Steryl-ester acylhydrolase"
       - metabolites: !!omap
           - MAM01450r: 1
           - MAM01508r: -1
@@ -107705,7 +107715,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03717"
-      - name: ""
+      - name: "Steryl-ester acylhydrolase"
       - metabolites: !!omap
           - MAM01450r: 1
           - MAM01465r: -1
@@ -107723,7 +107733,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03718"
-      - name: ""
+      - name: "Steryl-ester acylhydrolase"
       - metabolites: !!omap
           - MAM01432r: 1
           - MAM01450r: 1
@@ -107741,7 +107751,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03719"
-      - name: ""
+      - name: "Steryl-ester acylhydrolase"
       - metabolites: !!omap
           - MAM01450r: 1
           - MAM01497r: -1
@@ -107759,7 +107769,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03720"
-      - name: ""
+      - name: "Steryl-ester acylhydrolase"
       - metabolites: !!omap
           - MAM01450r: 1
           - MAM01500r: -1
@@ -107777,7 +107787,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03721"
-      - name: ""
+      - name: "Steryl-ester acylhydrolase"
       - metabolites: !!omap
           - MAM01450r: 1
           - MAM01473r: -1
@@ -107795,7 +107805,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03722"
-      - name: ""
+      - name: "Steryl-ester acylhydrolase"
       - metabolites: !!omap
           - MAM01450r: 1
           - MAM01480r: -1
@@ -107813,7 +107823,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03723"
-      - name: ""
+      - name: "Steryl-ester acylhydrolase"
       - metabolites: !!omap
           - MAM01450r: 1
           - MAM01468r: -1
@@ -107831,7 +107841,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03724"
-      - name: ""
+      - name: "Steryl-ester acylhydrolase"
       - metabolites: !!omap
           - MAM01450r: 1
           - MAM01475r: -1
@@ -107849,7 +107859,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03725"
-      - name: ""
+      - name: "Steryl-ester acylhydrolase"
       - metabolites: !!omap
           - MAM00135r: 1
           - MAM01450r: 1
@@ -107867,7 +107877,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03726"
-      - name: ""
+      - name: "Steryl-ester acylhydrolase"
       - metabolites: !!omap
           - MAM00114r: 1
           - MAM01450r: 1
@@ -107885,7 +107895,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03727"
-      - name: ""
+      - name: "Steryl-ester acylhydrolase"
       - metabolites: !!omap
           - MAM01450r: 1
           - MAM01466r: -1
@@ -107903,7 +107913,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03728"
-      - name: ""
+      - name: "Steryl-ester acylhydrolase"
       - metabolites: !!omap
           - MAM00010r: 1
           - MAM01450r: 1
@@ -107921,7 +107931,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03729"
-      - name: ""
+      - name: "Steryl-ester acylhydrolase"
       - metabolites: !!omap
           - MAM00341r: 1
           - MAM01450r: 1
@@ -107939,7 +107949,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03730"
-      - name: ""
+      - name: "Steryl-ester acylhydrolase"
       - metabolites: !!omap
           - MAM00260r: 1
           - MAM01450r: 1
@@ -107957,7 +107967,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03731"
-      - name: ""
+      - name: "Steryl-ester acylhydrolase"
       - metabolites: !!omap
           - MAM00315r: 1
           - MAM01450r: 1
@@ -107975,7 +107985,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03732"
-      - name: ""
+      - name: "Steryl-ester acylhydrolase"
       - metabolites: !!omap
           - MAM01450r: 1
           - MAM01499r: -1
@@ -107993,7 +108003,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03733"
-      - name: ""
+      - name: "Steryl-ester acylhydrolase"
       - metabolites: !!omap
           - MAM01450r: 1
           - MAM01493r: -1
@@ -108011,7 +108021,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03734"
-      - name: ""
+      - name: "Steryl-ester acylhydrolase"
       - metabolites: !!omap
           - MAM01450r: 1
           - MAM01490r: -1
@@ -108029,7 +108039,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03735"
-      - name: ""
+      - name: "Steryl-ester acylhydrolase"
       - metabolites: !!omap
           - MAM01362r: 1
           - MAM01450r: 1
@@ -108047,7 +108057,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03736"
-      - name: ""
+      - name: "Steryl-ester acylhydrolase"
       - metabolites: !!omap
           - MAM01291r: 1
           - MAM01450r: 1
@@ -108065,7 +108075,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03737"
-      - name: ""
+      - name: "Steryl-ester acylhydrolase"
       - metabolites: !!omap
           - MAM00132r: 1
           - MAM01450r: 1
@@ -108083,7 +108093,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03738"
-      - name: ""
+      - name: "Steryl-ester acylhydrolase"
       - metabolites: !!omap
           - MAM00111r: 1
           - MAM01450r: 1
@@ -108101,7 +108111,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03739"
-      - name: ""
+      - name: "Steryl-ester acylhydrolase"
       - metabolites: !!omap
           - MAM00094r: 1
           - MAM01450r: 1
@@ -108119,7 +108129,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03740"
-      - name: ""
+      - name: "Steryl-ester acylhydrolase"
       - metabolites: !!omap
           - MAM00008r: 1
           - MAM01450r: 1
@@ -108137,7 +108147,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03741"
-      - name: ""
+      - name: "Steryl-ester acylhydrolase"
       - metabolites: !!omap
           - MAM00021r: 1
           - MAM01450r: 1
@@ -108155,7 +108165,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03742"
-      - name: ""
+      - name: "Steryl-ester acylhydrolase"
       - metabolites: !!omap
           - MAM00265r: 1
           - MAM01450r: 1
@@ -108173,7 +108183,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR00715"
-      - name: ""
+      - name: "dihydroceramide,ferrocytochrome b5:oxygen oxidoreductase (C4-hydroxylating)"
       - metabolites: !!omap
           - MAM01699c: -1
           - MAM02039c: -1
@@ -108193,7 +108203,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR00716"
-      - name: ""
+      - name: "Phytoceramide amidohydrolase"
       - metabolites: !!omap
           - MAM02040c: -1
           - MAM02748c: -1
@@ -108210,7 +108220,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR00733"
-      - name: ""
+      - name: "acyl-CoA:sphingosine N-acyltransferase"
       - metabolites: !!omap
           - MAM01430g: -1
           - MAM01597g: -1
@@ -108228,7 +108238,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR00738"
-      - name: ""
+      - name: "Palmitoyl-CoA:L-serine C-palmitoyltransferase (decarboxylating)"
       - metabolites: !!omap
           - MAM00769c: 1
           - MAM01596c: 1
@@ -108247,7 +108257,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR00741"
-      - name: ""
+      - name: "Sphinganine:NADP+ 3-oxidoreductase"
       - metabolites: !!omap
           - MAM00769c: -1
           - MAM02039c: -1
@@ -108265,7 +108275,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR00744"
-      - name: ""
+      - name: "ATP:sphinganine 1-phosphotransferase"
       - metabolites: !!omap
           - MAM01285c: 1
           - MAM01371c: -1
@@ -108283,7 +108293,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR00746"
-      - name: ""
+      - name: "3-sn-phosphatidate phosphohydrolase"
       - metabolites: !!omap
           - MAM02040c: -1
           - MAM02751c: 1
@@ -108300,7 +108310,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR00748"
-      - name: ""
+      - name: "Sphinganine-1-phosphate pamlmitaldehyde-lyase"
       - metabolites: !!omap
           - MAM01798c: -1
           - MAM02113c: -1
@@ -108334,7 +108344,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR00753"
-      - name: ""
+      - name: "N-acylsphingosine amidohydrolase"
       - metabolites: !!omap
           - MAM01699c: -1
           - MAM02040c: -1
@@ -108371,7 +108381,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR00758"
-      - name: ""
+      - name: "acyl-CoA:sphingosine N-acyltransferase"
       - metabolites: !!omap
           - MAM01430c: -1
           - MAM01597c: -1
@@ -108389,7 +108399,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR00760"
-      - name: ""
+      - name: "ATP:ceramide 1-phosphotransferase"
       - metabolites: !!omap
           - MAM01285c: 1
           - MAM01371c: -1
@@ -108407,7 +108417,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR00761"
-      - name: ""
+      - name: "UDP-glucose:N-acylsphingosine D-glucosyltransferase"
       - metabolites: !!omap
           - MAM01430c: -1
           - MAM01972c: 1
@@ -108425,7 +108435,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR00762"
-      - name: ""
+      - name: "D-Glucosyl-N-acylsphingosine glucohydrolase"
       - metabolites: !!omap
           - MAM01430c: 1
           - MAM01965c: 1
@@ -108460,7 +108470,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR00765"
-      - name: ""
+      - name: "UDP-alpha-D-galactose:beta-D-glucosyl-(1<->1)-ceramide 4-beta-D-galactosyltransferase"
       - metabolites: !!omap
           - MAM01972r: -1
           - MAM02039r: 1
@@ -108495,7 +108505,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR00767"
-      - name: ""
+      - name: "3-sn-phosphatidate phosphohydrolase"
       - metabolites: !!omap
           - MAM01430c: 1
           - MAM01431c: -1
@@ -108512,7 +108522,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR00773"
-      - name: ""
+      - name: "ATP:sphingosine 1-phosphotransferase"
       - metabolites: !!omap
           - MAM01285c: 1
           - MAM01371c: -1
@@ -108530,7 +108540,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR00775"
-      - name: ""
+      - name: "3-sn-phosphatidate phosphohydrolase"
       - metabolites: !!omap
           - MAM02040c: -1
           - MAM02751c: 1
@@ -108547,7 +108557,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR00779"
-      - name: ""
+      - name: "sphingosine-1-phosphate palmitaldehyde-lyase (phosphoethanolamine-forming)"
       - metabolites: !!omap
           - MAM01798c: 1
           - MAM02116c: 1
@@ -108563,7 +108573,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR00781"
-      - name: ""
+      - name: "hexadecanal:NADP+ delta2-oxidoreductase"
       - metabolites: !!omap
           - MAM02039c: -1
           - MAM02113c: 1
@@ -108581,7 +108591,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR00783"
-      - name: ""
+      - name: "3-sn-phosphatidate phosphohydrolase"
       - metabolites: !!omap
           - MAM02040e: -1
           - MAM02751e: 1
@@ -108598,7 +108608,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR00795"
-      - name: ""
+      - name: "Sphingomyelin cholinephosphohydrolase"
       - metabolites: !!omap
           - MAM01430c: 1
           - MAM02039c: 1
@@ -108616,7 +108626,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR08147"
-      - name: ""
+      - name: "UDP-alpha-D-galactose:beta-D-glucosyl-(1<->1)-ceramide 4-beta-D-galactosyltransferase"
       - metabolites: !!omap
           - MAM01972g: -1
           - MAM02039g: 1
@@ -108921,7 +108931,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR00786"
-      - name: ""
+      - name: "beta-D-Galactosyl-1,4-beta-D-glucosylceramide galactohydrolase"
       - metabolites: !!omap
           - MAM01910l: 1
           - MAM01972l: 1
@@ -108938,7 +108948,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR08217"
-      - name: ""
+      - name: "Digalactosylceramide galactohydrolase"
       - metabolites: !!omap
           - MAM01679l: 1
           - MAM01694l: -1
@@ -109058,7 +109068,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR08237"
-      - name: ""
+      - name: "Sphinganine-1-phosphate pamlmitaldehyde-lyase"
       - metabolites: !!omap
           - MAM01798r: 1
           - MAM02113r: 1
@@ -109127,7 +109137,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR08248"
-      - name: ""
+      - name: "UDP-glucose:N-acylsphingosine D-glucosyltransferase"
       - metabolites: !!omap
           - MAM01430r: -1
           - MAM01972r: 1
@@ -109199,7 +109209,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR00453"
-      - name: ""
+      - name: "glycerol:NADP+ oxidoreductase"
       - metabolites: !!omap
           - MAM01981c: -1
           - MAM01983c: 1
@@ -109217,7 +109227,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR00456"
-      - name: ""
+      - name: "D-Glyceraldehyde:NAD+ oxidoreductase"
       - metabolites: !!omap
           - MAM01981c: -1
           - MAM01982c: 1
@@ -109236,7 +109246,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR00458"
-      - name: ""
+      - name: "glycerol:NADP+ oxidoreductase"
       - metabolites: !!omap
           - MAM01981m: 1
           - MAM01983m: -1
@@ -109254,7 +109264,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR00459"
-      - name: ""
+      - name: "D-Glyceraldehyde:NAD+ oxidoreductase"
       - metabolites: !!omap
           - MAM01981m: -1
           - MAM01982m: 1
@@ -109273,7 +109283,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR00463"
-      - name: ""
+      - name: "phosphatidylcholine 2-acylhydrolase"
       - metabolites: !!omap
           - MAM00656r: 1
           - MAM02039r: 1
@@ -110294,7 +110304,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR00588"
-      - name: ""
+      - name: "acyl-CoA:1-acyl-sn-glycerol-3-phosphate 2-O-acyltransferase"
       - metabolites: !!omap
           - MAM01597c: 1
           - MAM02733c: 1
@@ -110311,7 +110321,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR00596"
-      - name: ""
+      - name: "1,2-diacyl-sn-glycerol 3-phosphate phosphohydrolase"
       - metabolites: !!omap
           - MAM00240c: 1
           - MAM02040c: -1
@@ -110328,7 +110338,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR00673"
-      - name: ""
+      - name: "ATP:acylglycerol 3-phosphotransferase"
       - metabolites: !!omap
           - MAM00509c: -1
           - MAM01285c: 1
@@ -110346,7 +110356,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR00674"
-      - name: ""
+      - name: "ATP:acylglycerol 3-phosphotransferase"
       - metabolites: !!omap
           - MAM00504c: -1
           - MAM01285c: 1
@@ -110364,7 +110374,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR00675"
-      - name: ""
+      - name: "ATP:acylglycerol 3-phosphotransferase"
       - metabolites: !!omap
           - MAM00505c: -1
           - MAM01285c: 1
@@ -110382,7 +110392,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR00676"
-      - name: ""
+      - name: "ATP:acylglycerol 3-phosphotransferase"
       - metabolites: !!omap
           - MAM00507c: -1
           - MAM01285c: 1
@@ -110400,7 +110410,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR00677"
-      - name: ""
+      - name: "ATP:acylglycerol 3-phosphotransferase"
       - metabolites: !!omap
           - MAM00506c: -1
           - MAM01285c: 1
@@ -110418,7 +110428,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR00678"
-      - name: ""
+      - name: "ATP:acylglycerol 3-phosphotransferase"
       - metabolites: !!omap
           - MAM00508c: -1
           - MAM01285c: 1
@@ -110436,7 +110446,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04296"
-      - name: ""
+      - name: "ethanolamine-phosphate phosphate-lyase (deaminating"
       - metabolites: !!omap
           - MAM01249c: 1
           - MAM01798c: -1
@@ -110455,7 +110465,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04390"
-      - name: ""
+      - name: "Glycerone phosphate phosphohydrolase"
       - metabolites: !!omap
           - MAM01690e: -1
           - MAM01984e: 1
@@ -110472,7 +110482,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR05254"
-      - name: ""
+      - name: "phosphatidylcholine 2-acylhydrolase"
       - metabolites: !!omap
           - MAM00656l: 1
           - MAM02039l: 1
@@ -110490,7 +110500,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR07599"
-      - name: ""
+      - name: "CDPethanolamine:1-alkyl-2-acylglycerol ethanolaminephosphotransferase"
       - metabolites: !!omap
           - MAM00514c: -1
           - MAM00515c: 1
@@ -110508,7 +110518,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR00448"
-      - name: ""
+      - name: "ATP:glycerol 3-phosphotransferase"
       - metabolites: !!omap
           - MAM01285m: 1
           - MAM01371m: -1
@@ -110526,7 +110536,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR00450"
-      - name: ""
+      - name: "ATP:glycerol 3-phosphotransferase"
       - metabolites: !!omap
           - MAM01285c: 1
           - MAM01371c: -1
@@ -110562,7 +110572,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR00478"
-      - name: ""
+      - name: "sn-Glycerol-3-phosphate:NADP+ 2-oxidoreductase"
       - metabolites: !!omap
           - MAM01690c: -1
           - MAM02039c: -1
@@ -110580,7 +110590,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR00479"
-      - name: ""
+      - name: "sn-Glycerol-3-phosphate:NAD+ 2-oxidoreductase"
       - metabolites: !!omap
           - MAM01690c: -1
           - MAM02039c: -1
@@ -110598,7 +110608,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR00481"
-      - name: ""
+      - name: "sn-Glycerol-3-phosphate:NAD+ 2-oxidoreductase"
       - metabolites: !!omap
           - MAM01690x: -1
           - MAM02039x: -1
@@ -110616,7 +110626,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR00483"
-      - name: ""
+      - name: "sn-glycerol 3-phosphate:quinone oxidoreductase"
       - metabolites: !!omap
           - MAM01690c: 1
           - MAM02914c: -1
@@ -110633,7 +110643,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR00482"
-      - name: ""
+      - name: "sn-Glycerol-3-phosphate:(acceptor) 2-oxidoreductase"
       - metabolites: !!omap
           - MAM01690c: 1
           - MAM01802c: -1
@@ -110650,7 +110660,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR00579"
-      - name: ""
+      - name: "acyl-CoA:sn-glycerol-3-phosphate 1-O-acyltransferase"
       - metabolites: !!omap
           - MAM01597m: 1
           - MAM02914m: -1
@@ -110667,7 +110677,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR00580"
-      - name: ""
+      - name: "acyl-CoA:1-acyl-sn-glycerol-3-phosphate 2-O-acyltransferase"
       - metabolites: !!omap
           - MAM01597m: 1
           - MAM02727m: 1
@@ -110737,7 +110747,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR00586"
-      - name: ""
+      - name: "CDP-diacylglycerol:phosphatidylglycerol 3-phosphatidyltransferase"
       - metabolites: !!omap
           - MAM01426m: -1
           - MAM01589m: 1
@@ -110755,7 +110765,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR00589"
-      - name: ""
+      - name: "acyl-CoA:1-acyl-sn-glycerol-3-phosphate 2-O-acyltransferase"
       - metabolites: !!omap
           - MAM01597c: 1
           - MAM02728c: 1
@@ -110772,7 +110782,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR00590"
-      - name: ""
+      - name: "acyl-CoA:1-acyl-sn-glycerol-3-phosphate 2-O-acyltransferase"
       - metabolites: !!omap
           - MAM01597c: 1
           - MAM02729c: 1
@@ -110789,7 +110799,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR00591"
-      - name: ""
+      - name: "acyl-CoA:1-acyl-sn-glycerol-3-phosphate 2-O-acyltransferase"
       - metabolites: !!omap
           - MAM01597c: 1
           - MAM02731c: 1
@@ -110806,7 +110816,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR00592"
-      - name: ""
+      - name: "acyl-CoA:1-acyl-sn-glycerol-3-phosphate 2-O-acyltransferase"
       - metabolites: !!omap
           - MAM01597c: 1
           - MAM02730c: 1
@@ -110823,7 +110833,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR00593"
-      - name: ""
+      - name: "acyl-CoA:1-acyl-sn-glycerol-3-phosphate 2-O-acyltransferase"
       - metabolites: !!omap
           - MAM01597c: 1
           - MAM02732c: 1
@@ -110840,7 +110850,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR00594"
-      - name: ""
+      - name: "acyl-CoA:1-acyl-sn-glycerol-3-phosphate 2-O-acyltransferase"
       - metabolites: !!omap
           - MAM00473c: -1
           - MAM01269c: -1
@@ -110857,7 +110867,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR00597"
-      - name: ""
+      - name: "1,2-diacyl-sn-glycerol 3-phosphate phosphohydrolase"
       - metabolites: !!omap
           - MAM00235c: 1
           - MAM02040c: -1
@@ -110874,7 +110884,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR00598"
-      - name: ""
+      - name: "1,2-diacyl-sn-glycerol 3-phosphate phosphohydrolase"
       - metabolites: !!omap
           - MAM00236c: 1
           - MAM02040c: -1
@@ -110891,7 +110901,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR00599"
-      - name: ""
+      - name: "1,2-diacyl-sn-glycerol 3-phosphate phosphohydrolase"
       - metabolites: !!omap
           - MAM00238c: 1
           - MAM02040c: -1
@@ -110908,7 +110918,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR00600"
-      - name: ""
+      - name: "1,2-diacyl-sn-glycerol 3-phosphate phosphohydrolase"
       - metabolites: !!omap
           - MAM00237c: 1
           - MAM02040c: -1
@@ -110925,7 +110935,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR00601"
-      - name: ""
+      - name: "1,2-diacyl-sn-glycerol 3-phosphate phosphohydrolase"
       - metabolites: !!omap
           - MAM00239c: 1
           - MAM02040c: -1
@@ -110942,7 +110952,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR00602"
-      - name: ""
+      - name: "1,2-diacyl-sn-glycerol 3-phosphate phosphohydrolase"
       - metabolites: !!omap
           - MAM00233c: 1
           - MAM02040c: -1
@@ -110957,27 +110967,9 @@
       - subsystem:
           - "Glycerophospholipid metabolism"
       - confidence_score: 0
-    - !!omap
-      - id: "MAR00607"
-      - name: ""
-      - metabolites: !!omap
-          - MAM01427c: -1
-          - MAM01623c: 1
-          - MAM02039c: 1
-          - MAM02730c: 1
-          - MAM02759c: -1
-      - lower_bound: -1000
-      - upper_bound: 1000
-      - gene_reaction_rule: "Cds"
-      - rxnNotes: ""
-      - eccodes: "2.7.7.41"
-      - references: "PMID:1330695;PMID:9370329"
-      - subsystem:
-          - "Glycerophospholipid metabolism"
-      - confidence_score: 0
     - !!omap
       - id: "MAR00610"
-      - name: ""
+      - name: "CDP-diacylglycerol:myo-inositol 3-phosphatidyltransferase"
       - metabolites: !!omap
           - MAM01427c: -1
           - MAM01590c: 1
@@ -110995,7 +110987,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR00613"
-      - name: ""
+      - name: "CDP-diacylglycerol:myo-inositol 3-phosphatidyltransferase"
       - metabolites: !!omap
           - MAM01427r: -1
           - MAM01590r: 1
@@ -111013,7 +111005,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR00614"
-      - name: ""
+      - name: "CDPethanolamine:1,2-diacylglycerol ethanolaminephosphotransferase"
       - metabolites: !!omap
           - MAM00236c: -1
           - MAM01428c: -1
@@ -111031,7 +111023,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR00615"
-      - name: ""
+      - name: "CDPethanolamine:1,2-diacylglycerol ethanolaminephosphotransferase"
       - metabolites: !!omap
           - MAM00238c: -1
           - MAM01428c: -1
@@ -111049,7 +111041,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR00616"
-      - name: ""
+      - name: "Phsophatidyl-L-serine carboxy-lyase"
       - metabolites: !!omap
           - MAM01596c: -1
           - MAM02039c: 1
@@ -111084,7 +111076,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR00627"
-      - name: ""
+      - name: "Phsophatidyl-L-serine carboxy-lyase"
       - metabolites: !!omap
           - MAM01596c: 1
           - MAM02039c: -1
@@ -111101,7 +111093,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR00629"
-      - name: ""
+      - name: "phosphatidylcholine phosphatidohydrolase"
       - metabolites: !!omap
           - MAM01513c: 1
           - MAM02039c: 1
@@ -111119,7 +111111,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR00630"
-      - name: ""
+      - name: "phosphatidylcholine 2-acylhydrolase"
       - metabolites: !!omap
           - MAM00656c: 1
           - MAM02039c: 1
@@ -111137,7 +111129,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR00632"
-      - name: ""
+      - name: "Acyl-CoA:1-acyl-sn-glycero-3-phosphocholine O-acyltransferase"
       - metabolites: !!omap
           - MAM00656c: -1
           - MAM01597c: 1
@@ -111154,7 +111146,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR00633"
-      - name: ""
+      - name: "1-Acyl-sn-glycero-3-phosphocholine acylhydrolase"
       - metabolites: !!omap
           - MAM00656c: -1
           - MAM02039c: 1
@@ -111172,7 +111164,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR00634"
-      - name: ""
+      - name: "Phosphatidylcholine:sterol O-acyltransferase"
       - metabolites: !!omap
           - MAM00656c: 1
           - MAM01450c: -1
@@ -111189,7 +111181,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR00635"
-      - name: ""
+      - name: "sn-Glycero-3-phosphocholine glycerophosphohydrolase"
       - metabolites: !!omap
           - MAM01513c: 1
           - MAM02039c: 1
@@ -111207,7 +111199,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR00636"
-      - name: ""
+      - name: "ATP:choline phosphotransferase"
       - metabolites: !!omap
           - MAM01285c: 1
           - MAM01371c: -1
@@ -111225,7 +111217,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR00638"
-      - name: ""
+      - name: "CTP:choline-phosphate cytidylyltransferase"
       - metabolites: !!omap
           - MAM01425c: 1
           - MAM01623c: -1
@@ -111243,7 +111235,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR00640"
-      - name: ""
+      - name: "Acetyl-CoA:choline O-acetyltransferase"
       - metabolites: !!omap
           - MAM01260c: 1
           - MAM01261c: -1
@@ -111260,7 +111252,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR00641"
-      - name: ""
+      - name: "Acetylcholine aectylhydrolase"
       - metabolites: !!omap
           - MAM01252c: 1
           - MAM01260c: -1
@@ -111278,7 +111270,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR00642"
-      - name: ""
+      - name: "phosphatidylethanolamine phosphatidohydrolase"
       - metabolites: !!omap
           - MAM01797c: 1
           - MAM02039c: 1
@@ -111296,7 +111288,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR00643"
-      - name: ""
+      - name: "phosphatidylethanolamine 2-acylhydrolase"
       - metabolites: !!omap
           - MAM00511c: 1
           - MAM02039c: 1
@@ -111314,7 +111306,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR00644"
-      - name: ""
+      - name: "Acyl-CoA:1-acyl-sn-glycero-3-phosphoethanolamine O-acyltransferase"
       - metabolites: !!omap
           - MAM00511c: -1
           - MAM01597c: 1
@@ -111331,7 +111323,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR00645"
-      - name: ""
+      - name: "1-Acyl-sn-glycero-3-phosphoethanolamine aldehydohydrolase"
       - metabolites: !!omap
           - MAM00511c: -1
           - MAM02039c: 1
@@ -111349,7 +111341,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR00646"
-      - name: ""
+      - name: "sn-Glycero-3-phosphoethanolamine glycerophosphohydrolase"
       - metabolites: !!omap
           - MAM01797c: 1
           - MAM02039c: 1
@@ -111367,7 +111359,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR00647"
-      - name: ""
+      - name: "ethanolamine ammonia-lyase (acetaldehyde-forming)"
       - metabolites: !!omap
           - MAM01249c: 1
           - MAM01797c: -1
@@ -111384,7 +111376,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR00648"
-      - name: ""
+      - name: "ATP:ethanolamine O-phosphotransferase"
       - metabolites: !!omap
           - MAM01285c: 1
           - MAM01371c: -1
@@ -111402,7 +111394,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR00649"
-      - name: ""
+      - name: "Phosphoethanolamine phosphohydrolase"
       - metabolites: !!omap
           - MAM01797c: 1
           - MAM01798c: -1
@@ -111419,7 +111411,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR00651"
-      - name: ""
+      - name: "CTP:ethanolamine-phosphate cytidylyltransferase"
       - metabolites: !!omap
           - MAM01428c: 1
           - MAM01623c: -1
@@ -111455,7 +111447,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04627"
-      - name: ""
+      - name: "S-Adenosyl-L-methionine:ethanolamine-phosphate N-methyltransferase"
       - metabolites: !!omap
           - MAM01798c: -1
           - MAM02039c: 1
@@ -111473,7 +111465,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04838"
-      - name: ""
+      - name: "S-Adenosyl-L-methionine:methylethanolamine phosphate N-methyltransferase"
       - metabolites: !!omap
           - MAM02039c: 2
           - MAM02600c: -1
@@ -111491,7 +111483,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04839"
-      - name: ""
+      - name: "S-Adenosyl-L-methionine:phosphodimethylethanolamine N-methyltransferase"
       - metabolites: !!omap
           - MAM02738c: 1
           - MAM02739c: -1
@@ -111526,7 +111518,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR07594"
-      - name: ""
+      - name: "1-Acyl-glycerone-3-phosphate:long-chain-alcohol O-3-phospho-2-oxopropanyltransferase"
       - metabolites: !!omap
           - MAM01278x: -1
           - MAM01311x: 1
@@ -111564,7 +111556,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR07601"
-      - name: ""
+      - name: "plasmanylethanolamine,ferrocytochrome b5:oxygen oxidoreductase (plasmenylethanolamine-forming)"
       - metabolites: !!omap
           - MAM00515c: -1
           - MAM02039c: -1
@@ -111584,7 +111576,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR07611"
-      - name: ""
+      - name: "1-Alkyl-2-acetyl-sn-glycero-3-phosphocholine acetohydrolase"
       - metabolites: !!omap
           - MAM00549c: 1
           - MAM00626c: -1
@@ -111602,7 +111594,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR07613"
-      - name: ""
+      - name: "Acetyl-CoA:1-alkyl-sn-glycero-3-phosphocholine 2-O-acetyltransferase"
       - metabolites: !!omap
           - MAM00549c: -1
           - MAM00626c: 1
@@ -111619,7 +111611,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR08362"
-      - name: ""
+      - name: "Acetyl-CoA:choline O-acetyltransferase"
       - metabolites: !!omap
           - MAM01260n: -1
           - MAM01261n: 1
@@ -111636,7 +111628,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR08421"
-      - name: ""
+      - name: "Acetylcholine aectylhydrolase"
       - metabolites: !!omap
           - MAM01252e: 1
           - MAM01260e: -1
@@ -111654,7 +111646,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR08424"
-      - name: ""
+      - name: "Phosphocholine phosphohydrolase"
       - metabolites: !!omap
           - MAM01513c: 1
           - MAM02040c: -1
@@ -111671,7 +111663,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR08518"
-      - name: ""
+      - name: "1-Alkyl-2-acetyl-sn-glycero-3-phosphocholine acetohydrolase"
       - metabolites: !!omap
           - MAM00516c: 1
           - MAM00626c: -1
@@ -111689,7 +111681,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR08521"
-      - name: ""
+      - name: "Acetyl-CoA:1-alkyl-sn-glycero-3-phosphocholine 2-O-acetyltransferase"
       - metabolites: !!omap
           - MAM00516c: -1
           - MAM00626c: 1
@@ -111724,7 +111716,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR08523"
-      - name: ""
+      - name: "phosphatidylcholine phosphatidohydrolase"
       - metabolites: !!omap
           - MAM01513g: 1
           - MAM02039g: 1
@@ -111742,7 +111734,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR08525"
-      - name: ""
+      - name: "phosphatidylcholine phosphatidohydrolase"
       - metabolites: !!omap
           - MAM01513r: 1
           - MAM02039r: 1
@@ -112545,7 +112537,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR00912"
-      - name: ""
+      - name: "UDP-alpha-D-galactose:sphingosine 1-beta-galactosyltransferase"
       - metabolites: !!omap
           - MAM02039c: 1
           - MAM02810c: 1
@@ -112563,7 +112555,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR00787"
-      - name: ""
+      - name: "D-Glucosyl-N-acylsphingosine glucohydrolase"
       - metabolites: !!omap
           - MAM01430l: 1
           - MAM01965l: 1
@@ -112580,7 +112572,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR00797"
-      - name: ""
+      - name: "Sphingomyelin cholinephosphohydrolase"
       - metabolites: !!omap
           - MAM01430l: 1
           - MAM02039l: 1
@@ -112667,7 +112659,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR00919"
-      - name: ""
+      - name: "UDP-alpha-D-galactose:N-acylsphingosine D-galactosyltransferase"
       - metabolites: !!omap
           - MAM01430c: -1
           - MAM01679c: 1
@@ -112685,7 +112677,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR00920"
-      - name: ""
+      - name: "UDP-alpha-D-galactose:N-acylsphingosine D-galactosyltransferase"
       - metabolites: !!omap
           - MAM01430g: -1
           - MAM01679g: 1
@@ -112703,7 +112695,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR00921"
-      - name: ""
+      - name: "UDP-alpha-D-galactose:N-acylsphingosine D-galactosyltransferase"
       - metabolites: !!omap
           - MAM01430r: -1
           - MAM01679r: 1
@@ -112757,7 +112749,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR00926"
-      - name: ""
+      - name: "UDP-alpha-D-galactose:beta-D-glucosyl-(1<->1)-ceramide 4-beta-D-galactosyltransferase"
       - metabolites: !!omap
           - MAM01972c: -1
           - MAM02039c: 1
@@ -112775,7 +112767,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR08378"
-      - name: ""
+      - name: "dolichyl-beta-D-mannosyl-phosphate:protein-serine O-D-mannosyltransferase"
       - metabolites: !!omap
           - MAM00205c: 1
           - MAM01733c: -1
@@ -113297,7 +113289,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR01979"
-      - name: ""
+      - name: "Pregnenolone:NAD+ 3-oxidoreductase"
       - metabolites: !!omap
           - MAM02039c: 1
           - MAM02552c: -1
@@ -113449,7 +113441,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR01312"
-      - name: ""
+      - name: "(5Z,13E)-(15S)-9alpha,11alpha-epidioxy-15-hydroxyprosta-5,13- dienoate E-isomerase"
       - metabolites: !!omap
           - MAM02786c: 1
           - MAM02794c: -1
@@ -113464,7 +113456,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR01313"
-      - name: ""
+      - name: "(5Z,13E)-(15S)-9alpha,11alpha-Epidioxy-15-hydroxyprosta-5,13-thromboxane-A2-isomerase"
       - metabolites: !!omap
           - MAM02794r: -1
           - MAM02994r: 1
@@ -113664,7 +113656,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR01327"
-      - name: ""
+      - name: "(5Z,13E)-(15S)-9alpha,11alpha,15-trihydroxyprosta-5,13-dienoate:NADP+ 9-oxidoreductase"
       - metabolites: !!omap
           - MAM02039c: 1
           - MAM02554c: -1
@@ -113682,7 +113674,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR01328"
-      - name: ""
+      - name: "(5Z,13E)-(15S)-9alpha,11alpha,15-Trihydroxyprosta-5,13-dienoate:NAD+ 15-oxidoreductase"
       - metabolites: !!omap
           - MAM00392c: -1
           - MAM02039c: -1
@@ -113700,7 +113692,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR01329"
-      - name: ""
+      - name: "(5Z,13E)-(15S)-9alpha,11alpha,15-trihydroxyprosta-5,13-dienoate:NADP+ 11-oxidoreductase"
       - metabolites: !!omap
           - MAM02039c: -1
           - MAM02554c: 1
@@ -113718,7 +113710,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR01330"
-      - name: ""
+      - name: "(5Z,13E)-(15S)-9alpha,11alpha-epidioxy-15-hydroxyprosta-5,13- dienoate D-isomerase"
       - metabolites: !!omap
           - MAM02783c: 1
           - MAM02794c: -1
@@ -113797,7 +113789,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR01336"
-      - name: ""
+      - name: "(5Z,13E)-(15S)-9alpha,15-dihydroxy-11-oxoprosta-5,13-dienoate:NADP+ 15-oxidoreductase"
       - metabolites: !!omap
           - MAM00381c: -1
           - MAM02039c: -1
@@ -113952,7 +113944,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR01346"
-      - name: ""
+      - name: "fatty acylamide amidohydrolase"
       - metabolites: !!omap
           - MAM01335c: 1
           - MAM01362c: -1
@@ -114560,7 +114552,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR07598"
-      - name: ""
+      - name: "1-Alkyl-2-acyl-sn-glycero-3-phosphate phosphohydrolase"
       - metabolites: !!omap
           - MAM00514c: 1
           - MAM00628c: -1
@@ -114595,7 +114587,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR07602"
-      - name: ""
+      - name: "Acyl-CoA:1-alkenylglycerophosphoethanolamine O-acyltransferase"
       - metabolites: !!omap
           - MAM00223c: -1
           - MAM01597c: 1
@@ -114612,7 +114604,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR07603"
-      - name: ""
+      - name: "plasmenylethanolamine 2-acylhydrolase"
       - metabolites: !!omap
           - MAM00223c: 1
           - MAM02039c: 1
@@ -114666,7 +114658,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR07610"
-      - name: ""
+      - name: "CDP-choline:1-alkyl-2-acetylglycerol cholinephosphotransferase"
       - metabolites: !!omap
           - MAM00513c: -1
           - MAM00626c: 1
@@ -114684,7 +114676,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR07614"
-      - name: ""
+      - name: "Acyl-CoA:1-alkyl-sn-glycero-3-phosphocholine O-acyltransferase"
       - metabolites: !!omap
           - MAM00549c: -1
           - MAM00560c: 1
@@ -114701,7 +114693,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR07615"
-      - name: ""
+      - name: "plasmanylcholine 2-acylhydrolase"
       - metabolites: !!omap
           - MAM00549c: 1
           - MAM00560c: -1
@@ -115097,7 +115089,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR07217"
-      - name: ""
+      - name: "heparosan-N-sulfate-D-glucuronate glucurono-5-epimerase"
       - metabolites: !!omap
           - MAM02082g: -1
           - MAM02083g: 1
@@ -119274,7 +119266,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR08643"
-      - name: ""
+      - name: "cocaine benzoylhydrolase"
       - metabolites: !!omap
           - MAM01380c: 1
           - MAM01601c: -1
@@ -119292,7 +119284,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR08645"
-      - name: ""
+      - name: "cocaine benzoylhydrolase"
       - metabolites: !!omap
           - MAM01380r: 1
           - MAM01601r: -1
@@ -119310,7 +119302,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR01584"
-      - name: ""
+      - name: "7alpha-Hydroxycholesterol:NAD+ 3-oxidoreductase"
       - metabolites: !!omap
           - MAM01182r: 1
           - MAM01183r: -1
@@ -119328,7 +119320,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR01585"
-      - name: ""
+      - name: "Cholest-5-ene-3beta,7alpha-diol:NAD+ 3-oxidoreductase"
       - metabolites: !!omap
           - MAM01182r: 1
           - MAM01183r: -1
@@ -119381,7 +119373,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR01595"
-      - name: ""
+      - name: "7alpha-Hydroxy-5beta-cholestan-3-one:NADP+ delta4-oxidoreductase"
       - metabolites: !!omap
           - MAM01177c: 1
           - MAM01178c: -1
@@ -119399,7 +119391,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR01598"
-      - name: ""
+      - name: "3alpha,7alpha,12alpha-Trihydroxy-5beta-cholestane:NAD+ oxidoreductase (B-specific)"
       - metabolites: !!omap
           - MAM01078c: 1
           - MAM01177c: -1
@@ -119417,7 +119409,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR01599"
-      - name: ""
+      - name: "3alpha,7alpha,12alpha-Trihydroxy-5beta-cholestane:NADP+ oxidoreductase (B-specific)"
       - metabolites: !!omap
           - MAM01078c: 1
           - MAM01177c: -1
@@ -119529,7 +119521,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR01611"
-      - name: ""
+      - name: "3alpha,7alpha,12alpha-Trihydroxy-5beta-cholestan-26-al:NAD+ 26-oxidoreductase"
       - metabolites: !!omap
           - MAM00750c: -1
           - MAM00752c: 1
@@ -119601,7 +119593,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR01620"
-      - name: ""
+      - name: "3alpha,7alpha-Dihydroxy-5beta-cholestanate:CoA ligase (AMP-forming)"
       - metabolites: !!omap
           - MAM00752c: -1
           - MAM00752m: 1
@@ -119651,7 +119643,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR01624"
-      - name: ""
+      - name: "3alpha,7alpha,12alpha-trihydroxy-5beta-cholestanoate:CoA ligase (AMP-forming)"
       - metabolites: !!omap
           - MAM00616r: 1
           - MAM00752r: -1
@@ -119670,7 +119662,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR01625"
-      - name: ""
+      - name: "3alpha,7alpha,12alpha-trihydroxy-5beta-cholestanoate:CoA ligase (AMP-forming)"
       - metabolites: !!omap
           - MAM00616x: 1
           - MAM00752x: -1
@@ -119689,7 +119681,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR01627"
-      - name: ""
+      - name: "3alpha,7alpha,12alpha-trihydroxy-5beta-cholestanoate:CoA ligase (AMP-forming)"
       - metabolites: !!omap
           - MAM00616c: 1
           - MAM00752c: -1
@@ -119708,7 +119700,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR01632"
-      - name: ""
+      - name: "3alpha,7alpha,12alpha-trihydroxy-5beta-cholestan-26-oyl-CoA 25-epimerase"
       - metabolites: !!omap
           - MAM00616x: -1
           - MAM00618x: 1
@@ -119723,7 +119715,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR01635"
-      - name: ""
+      - name: "3alpha,7alpha,12alpha-trihydroxy-5beta-cholestan-26-oyl-CoA 25-epimerase"
       - metabolites: !!omap
           - MAM00616m: -1
           - MAM00618m: 1
@@ -119791,7 +119783,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR01642"
-      - name: ""
+      - name: "(24R,25R)-3alpha,7alpha,12alpha,24-tetrahydroxy-5beta-cholestanoyl-CoA hydro-lyase [(24E)-3alpha,7alpha,12alpha-trihydroxy-5beta-cholest-24-enoyl-CoA-forming]"
       - metabolites: !!omap
           - MAM00036x: 1
           - MAM00749x: -1
@@ -119807,7 +119799,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR01646"
-      - name: ""
+      - name: "(24R,25R)-3alpha,7alpha,12alpha,24-tetrahydroxy-5beta-cholestanoyl-CoA:NAD+ oxidoreductase"
       - metabolites: !!omap
           - MAM00036x: -1
           - MAM00748x: 1
@@ -119825,7 +119817,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR01652"
-      - name: ""
+      - name: "3alpha,7alpha,12alpha-trihydroxy-5beta-cholanoyl-CoA:propanoyl-CoA C-acyltransferase"
       - metabolites: !!omap
           - MAM00748x: -1
           - MAM01514x: 1
@@ -119842,7 +119834,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR01653"
-      - name: ""
+      - name: "3alpha,7alpha,12alpha-trihydroxy-5beta-cholanoyl-CoA:propanoyl-CoA C-acyltransferase"
       - metabolites: !!omap
           - MAM00748m: -1
           - MAM01514m: 1
@@ -119924,7 +119916,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR01673"
-      - name: ""
+      - name: "7alpha-Hydroxy-5beta-cholestan-3-one:NADP+ delta4-oxidoreductase"
       - metabolites: !!omap
           - MAM01181c: 1
           - MAM01182c: -1
@@ -119942,7 +119934,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR01676"
-      - name: ""
+      - name: "3alpha,7alpha-Dihydroxy-5beta-cholestane:NADP+ oxidoreductase (B-specific)"
       - metabolites: !!omap
           - MAM01095c: 1
           - MAM01181c: -1
@@ -119960,7 +119952,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR01678"
-      - name: ""
+      - name: "3alpha,7alpha-Dihydroxy-5beta-cholestane:NAD+ oxidoreductase (B-specific)"
       - metabolites: !!omap
           - MAM01095c: 1
           - MAM01181c: -1
@@ -120126,7 +120118,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR01692"
-      - name: ""
+      - name: "3alpha,7alpha-Dihydroxy-5beta-cholestan-26-al:NAD+ oxidoreductase"
       - metabolites: !!omap
           - MAM00756c: -1
           - MAM00758c: 1
@@ -120214,7 +120206,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR01697"
-      - name: ""
+      - name: "3alpha,7alpha-dihydroxy-5beta-cholestanate:CoA ligase (AMP-forming)"
       - metabolites: !!omap
           - MAM00614c: 1
           - MAM00758c: -1
@@ -120233,7 +120225,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR01699"
-      - name: ""
+      - name: "3alpha,7alpha-dihydroxy-5beta-cholestanate:CoA ligase (AMP-forming)"
       - metabolites: !!omap
           - MAM00614r: 1
           - MAM00758r: -1
@@ -120252,7 +120244,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR01700"
-      - name: ""
+      - name: "3alpha,7alpha-dihydroxy-5beta-cholestanate:CoA ligase (AMP-forming)"
       - metabolites: !!omap
           - MAM00614x: 1
           - MAM00758x: -1
@@ -120306,7 +120298,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR01703"
-      - name: ""
+      - name: "3alpha,7alpha-dihydroxy-5beta-cholestanoyl-CoA 25-epimerase"
       - metabolites: !!omap
           - MAM00614x: -1
           - MAM00617x: 1
@@ -120338,7 +120330,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR01706"
-      - name: ""
+      - name: "(24R,25R)-3alpha,7alpha,24-trihydroxy-5beta-cholestanoyl-CoA hydro-lyase [(24E)-3alpha,7alpha-Dihydroxy-5beta-cholest-24-enoyl-CoA-forming]"
       - metabolites: !!omap
           - MAM00037x: 1
           - MAM00755x: -1
@@ -120354,7 +120346,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR01708"
-      - name: ""
+      - name: "(24R,25R)-3alpha,7alpha,24-trihydroxy-5beta-cholestanoyl-CoA:NAD+ oxidoreductase"
       - metabolites: !!omap
           - MAM00037x: -1
           - MAM00754x: 1
@@ -120372,7 +120364,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR01710"
-      - name: ""
+      - name: "Propanoyl-CoA:acetyl-CoA C-acyltransferase"
       - metabolites: !!omap
           - MAM00754x: -1
           - MAM01434x: 1
@@ -120419,7 +120411,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR01726"
-      - name: ""
+      - name: "chenodeoxycholate:CoA ligase (AMP-forming)"
       - metabolites: !!omap
           - MAM01334c: -1
           - MAM01371c: 1
@@ -120438,7 +120430,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR01727"
-      - name: ""
+      - name: "chenodeoxycholate:CoA ligase (AMP-forming)"
       - metabolites: !!omap
           - MAM01334r: -1
           - MAM01371r: 1
@@ -120841,7 +120833,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR01762"
-      - name: ""
+      - name: "cholesterol,NADPH:oxygen oxidoreductase (5alpha,6alpha-epoxidizing)"
       - metabolites: !!omap
           - MAM00625m: 1
           - MAM01450m: -1
@@ -120996,7 +120988,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR01778"
-      - name: ""
+      - name: "cholest-5-ene-3beta,7alpha,25-triol:NAD+ 3-oxidoreductase"
       - metabolites: !!omap
           - MAM01179r: -1
           - MAM01447r: 1
@@ -121125,7 +121117,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR01797"
-      - name: ""
+      - name: "cholest-5-ene-3beta,26-diol,[NADPH---hemoprotein reductase]:oxygen oxidoreductase (7alpha-hydroxylating)"
       - metabolites: !!omap
           - MAM00623c: -1
           - MAM01448c: 1
@@ -121145,7 +121137,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR01798"
-      - name: ""
+      - name: "cholest-5-ene-3beta,26-diol,[NADPH---hemoprotein reductase]:oxygen oxidoreductase (7alpha-hydroxylating)"
       - metabolites: !!omap
           - MAM00623m: -1
           - MAM01448m: 1
@@ -121165,7 +121157,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR01800"
-      - name: ""
+      - name: "cholest-5-ene-3beta,26-diol,[NADPH---hemoprotein reductase]:oxygen oxidoreductase (7alpha-hydroxylating)"
       - metabolites: !!omap
           - MAM00761m: 1
           - MAM01448m: -1
@@ -121453,7 +121445,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR01834"
-      - name: ""
+      - name: "Glycodeoxycholate amidohydrolase"
       - metabolites: !!omap
           - MAM00745c: -1
           - MAM01986c: -1
@@ -121486,7 +121478,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR01838"
-      - name: ""
+      - name: "lithocholate,[reduced NADPH---hemoprotein reductase]:oxygen oxidoreductase (6alpha-hydroxylating)"
       - metabolites: !!omap
           - MAM02039c: -2
           - MAM02040c: 1
@@ -121506,7 +121498,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR01843"
-      - name: ""
+      - name: "3'-Phosphoadenylylsulfate:taurolithocholate sulfotransferase"
       - metabolites: !!omap
           - MAM02039c: 1
           - MAM02681c: 1
@@ -121542,7 +121534,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03908"
-      - name: ""
+      - name: "L-Cysteine:oxygen oxidoreductase"
       - metabolites: !!omap
           - MAM00918c: 1
           - MAM01628c: -1
@@ -121559,7 +121551,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03910"
-      - name: ""
+      - name: "3-sulfino-L-alanine carboxy-lyase"
       - metabolites: !!omap
           - MAM00918c: -1
           - MAM01596c: 1
@@ -121576,7 +121568,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03911"
-      - name: ""
+      - name: "hypotaurine:NAD+ oxidoreductase"
       - metabolites: !!omap
           - MAM02039c: -1
           - MAM02040c: 1
@@ -121595,7 +121587,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04679"
-      - name: ""
+      - name: "Cysteamine:oxygen oxidoreductase"
       - metabolites: !!omap
           - MAM01627c: -1
           - MAM02039c: 1
@@ -121646,7 +121638,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR08065"
-      - name: ""
+      - name: "3-sulfo-L-alanine carboxy-lyase (taurine-forming)"
       - metabolites: !!omap
           - MAM01596c: 1
           - MAM02039c: -1
@@ -121679,7 +121671,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR01848"
-      - name: ""
+      - name: "Cholate:CoA ligase (AMP-forming)"
       - metabolites: !!omap
           - MAM01334r: -1
           - MAM01371r: 1
@@ -123455,7 +123447,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR00712"
-      - name: ""
+      - name: "Isocitrate:NADP+ oxidoreductase (decarboxylating)"
       - metabolites: !!omap
           - MAM01306x: 1
           - MAM01596x: 1
@@ -123473,7 +123465,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03992"
-      - name: ""
+      - name: "NADH:ferricytochrome-b5 oxidoreductase"
       - metabolites: !!omap
           - MAM01823c: -2
           - MAM01825c: 2
@@ -123491,7 +123483,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04252"
-      - name: ""
+      - name: "nicotinate D-ribonucleotide phosphohydrolase"
       - metabolites: !!omap
           - MAM02040c: -1
           - MAM02584c: 1
@@ -123508,7 +123500,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04253"
-      - name: ""
+      - name: "ATP:beta-D-ribosylnicotinate 5-phosphotransferase"
       - metabolites: !!omap
           - MAM01285c: 1
           - MAM01371c: -1
@@ -123526,7 +123518,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04254"
-      - name: ""
+      - name: "5-phospho-alpha-D-ribose 1-diphosphate:nicotinate ligase (ADP, diphosphate-forming)"
       - metabolites: !!omap
           - MAM02039c: -1
           - MAM02585c: 1
@@ -123544,7 +123536,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04257"
-      - name: ""
+      - name: "ATP:nicotinamide-nucleotide adenylyltransferase"
       - metabolites: !!omap
           - MAM01371c: -1
           - MAM01646c: 1
@@ -123562,7 +123554,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04259"
-      - name: ""
+      - name: "nicotinamide-D-ribonucleotide amidohydrolase"
       - metabolites: !!omap
           - MAM02039c: 1
           - MAM02040c: -1
@@ -123580,7 +123572,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04260"
-      - name: ""
+      - name: "Deamido-NAD+:L-glutamine amido-ligase (AMP-forming)"
       - metabolites: !!omap
           - MAM01334c: 1
           - MAM01371c: -1
@@ -123602,7 +123594,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04261"
-      - name: ""
+      - name: "deamido-NAD+:ammonia ligase (AMP-forming)"
       - metabolites: !!omap
           - MAM01334c: 1
           - MAM01371c: -1
@@ -123674,7 +123666,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04268"
-      - name: ""
+      - name: "ATP:NAD+ 2'-phosphotransferase"
       - metabolites: !!omap
           - MAM01285m: 1
           - MAM01371m: -1
@@ -123692,7 +123684,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04269"
-      - name: ""
+      - name: "ATP:NAD+ 2'-phosphotransferase"
       - metabolites: !!omap
           - MAM01285c: 1
           - MAM01371c: -1
@@ -123710,7 +123702,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04270"
-      - name: ""
+      - name: "NADP+ 2'-phosphohydrolase"
       - metabolites: !!omap
           - MAM02040c: -1
           - MAM02552c: 1
@@ -123727,7 +123719,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04276"
-      - name: ""
+      - name: "ATP:nicotinamide-nucleotide adenylyltransferase"
       - metabolites: !!omap
           - MAM01371n: -1
           - MAM01646n: 1
@@ -123745,7 +123737,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04278"
-      - name: ""
+      - name: "deamido-NAD+:ammonia ligase (AMP-forming)"
       - metabolites: !!omap
           - MAM01334n: 1
           - MAM01371n: -1
@@ -123764,7 +123756,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04279"
-      - name: ""
+      - name: "ATP:NAD+ 2'-phosphotransferase"
       - metabolites: !!omap
           - MAM01285n: 1
           - MAM01371n: -1
@@ -123782,7 +123774,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04662"
-      - name: ""
+      - name: "Nicotinate D-ribonucleoside:orthophosphate ribosyltransferase"
       - metabolites: !!omap
           - MAM02039c: 1
           - MAM02584c: -1
@@ -123800,7 +123792,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR07623"
-      - name: ""
+      - name: "NAD+:protein-L-arginine ADP-D-ribosyltransferase"
       - metabolites: !!omap
           - MAM00197c: -1
           - MAM00215c: 1
@@ -123818,7 +123810,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR07625"
-      - name: ""
+      - name: "NAD+:protein-L-arginine ADP-D-ribosyltransferase"
       - metabolites: !!omap
           - MAM00196c: 1
           - MAM00197c: -1
@@ -123838,7 +123830,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR07677"
-      - name: ""
+      - name: "Aldehyde:oxygen oxidoreductase"
       - metabolites: !!omap
           - MAM00536c: -1
           - MAM02039c: 1
@@ -123857,7 +123849,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR07678"
-      - name: ""
+      - name: "Aldehyde:oxygen oxidoreductase"
       - metabolites: !!omap
           - MAM00536c: -1
           - MAM02039c: 1
@@ -123912,7 +123904,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03871"
-      - name: ""
+      - name: "ATP:dephospho-CoA 3'-phosphotransferase"
       - metabolites: !!omap
           - MAM01285c: 1
           - MAM01371c: -1
@@ -123930,7 +123922,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04058"
-      - name: ""
+      - name: "ATP:dephospho-CoA 3'-phosphotransferase"
       - metabolites: !!omap
           - MAM01285m: 1
           - MAM01371m: -1
@@ -123948,7 +123940,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04498"
-      - name: ""
+      - name: "[Acyl-carrier-protein] 4'-pantetheine-phosphohydrolase"
       - metabolites: !!omap
           - MAM00184c: -1
           - MAM01349c: 1
@@ -123966,7 +123958,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04499"
-      - name: ""
+      - name: "[Acyl-carrier-protein] 4'-pantetheine-phosphohydrolase"
       - metabolites: !!omap
           - MAM02039m: -1
           - MAM02040m: 1
@@ -123984,7 +123976,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04500"
-      - name: ""
+      - name: "CoA:apo-[acyl-carrier-protein] pantetheinephosphotransferase"
       - metabolites: !!omap
           - MAM00184c: 1
           - MAM01349c: -1
@@ -124002,7 +123994,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04714"
-      - name: ""
+      - name: "ATP:pantothenate 4'-phosphotransferase"
       - metabolites: !!omap
           - MAM01285c: 1
           - MAM01371c: -1
@@ -124020,7 +124012,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04715"
-      - name: ""
+      - name: "ATP:pantothenate 4'-phosphotransferase"
       - metabolites: !!omap
           - MAM01285m: 1
           - MAM01371m: -1
@@ -124038,7 +124030,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04716"
-      - name: ""
+      - name: "N-((R)-Pantothenoyl)-L-cysteine carboxy-lyase"
       - metabolites: !!omap
           - MAM01596c: 1
           - MAM02039c: -1
@@ -124055,7 +124047,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04717"
-      - name: ""
+      - name: "(R)-pantetheine amidohydrolase"
       - metabolites: !!omap
           - MAM01627c: 1
           - MAM02040c: -1
@@ -124072,7 +124064,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04718"
-      - name: ""
+      - name: "ATP:pantothenate 4'-phosphotransferase"
       - metabolites: !!omap
           - MAM01285c: 1
           - MAM01371c: -1
@@ -124090,7 +124082,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04723"
-      - name: ""
+      - name: "(R)-4'-phosphopantothenate:L-cysteine ligase"
       - metabolites: !!omap
           - MAM00163c: 1
           - MAM01590c: 1
@@ -124110,7 +124102,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04725"
-      - name: ""
+      - name: "N-[(R)-4'-Phosphopantothenoyl]-L-cysteine carboxy-lyase"
       - metabolites: !!omap
           - MAM00163c: -1
           - MAM01596c: 1
@@ -124127,7 +124119,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04727"
-      - name: ""
+      - name: "ATP:pantetheine-4'-phosphate adenylyltransferase"
       - metabolites: !!omap
           - MAM01371c: -1
           - MAM01674c: 1
@@ -124145,7 +124137,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04730"
-      - name: ""
+      - name: "ATP:pantothenate 4'-phosphotransferase"
       - metabolites: !!omap
           - MAM00163c: -1
           - MAM01285c: -1
@@ -124163,7 +124155,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04731"
-      - name: ""
+      - name: "ATP:pantothenate 4'-phosphotransferase"
       - metabolites: !!omap
           - MAM00163m: -1
           - MAM01285m: -1
@@ -124181,7 +124173,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04733"
-      - name: ""
+      - name: "N-[(R)-4'-Phosphopantothenoyl]-L-cysteine carboxy-lyase"
       - metabolites: !!omap
           - MAM00163m: -1
           - MAM01596m: 1
@@ -124198,7 +124190,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04734"
-      - name: ""
+      - name: "ATP:pantetheine-4'-phosphate adenylyltransferase"
       - metabolites: !!omap
           - MAM01371m: -1
           - MAM01674m: 1
@@ -124233,7 +124225,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR08792"
-      - name: ""
+      - name: "pantetheine-4'-phosphate phosphohydrolase"
       - metabolites: !!omap
           - MAM02040c: -1
           - MAM02679c: 1
@@ -124283,7 +124275,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR06539"
-      - name: ""
+      - name: "myo-Inositol:oxygen oxidoreductase"
       - metabolites: !!omap
           - MAM01973c: 1
           - MAM02039c: 1
@@ -124301,7 +124293,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR06540"
-      - name: ""
+      - name: "1D-myo-inositol 1-phosphate phosphohydrolase"
       - metabolites: !!omap
           - MAM02040c: -1
           - MAM02171c: 1
@@ -124318,7 +124310,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR06542"
-      - name: ""
+      - name: "ATP:1-phosphatidyl-1D-myo-inositol 3-phosphotransferase"
       - metabolites: !!omap
           - MAM00552c: 1
           - MAM01285c: 1
@@ -124336,7 +124328,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR06543"
-      - name: ""
+      - name: "1-Phosphatidyl-1D-myo-inositol 3-phosphate 3-phosphohydrolase"
       - metabolites: !!omap
           - MAM00552c: -1
           - MAM02040c: -1
@@ -124353,7 +124345,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR06544"
-      - name: ""
+      - name: "ATP:1-phosphatidyl-1D-myo-inositol-3-phosphate 5-phosphotransferase"
       - metabolites: !!omap
           - MAM00552c: -1
           - MAM00555c: 1
@@ -124388,7 +124380,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR06546"
-      - name: ""
+      - name: "ATP:1-Phosphatidyl-1D-myo-inositol 4-phosphotransferase"
       - metabolites: !!omap
           - MAM00553c: 1
           - MAM01285c: 1
@@ -124406,7 +124398,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR06547"
-      - name: ""
+      - name: "ATP:1-Phosphatidyl-1D-myo-inositol 4-phosphotransferase"
       - metabolites: !!omap
           - MAM00553c: -1
           - MAM02040c: -1
@@ -124423,7 +124415,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR06548"
-      - name: ""
+      - name: "ATP:1-phosphatidyl-1D-myo-inositol-4-phosphate 3-phosphotransferase"
       - metabolites: !!omap
           - MAM00551c: 1
           - MAM00553c: -1
@@ -124441,7 +124433,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR06549"
-      - name: ""
+      - name: "1-phosphatidyl-1D-myo-inositol-3,4-bisphosphate 4-phosphohydrolase"
       - metabolites: !!omap
           - MAM00551c: -1
           - MAM00552c: 1
@@ -124458,7 +124450,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR06550"
-      - name: ""
+      - name: "1-Phosphatidyl-1D-myo-inositol 3,4-bisphosphate 3-phosphohydrolase"
       - metabolites: !!omap
           - MAM00551c: -1
           - MAM00553c: 1
@@ -124475,7 +124467,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR06551"
-      - name: ""
+      - name: "ATP:1-phosphatidyl-1D-myo-inositol-4-phosphate 5-phosphotransferase"
       - metabolites: !!omap
           - MAM00553c: -1
           - MAM01285c: 1
@@ -124493,7 +124485,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR06552"
-      - name: ""
+      - name: "Phosphatidyl-myo-inositol-4,5-bisphosphate 4-phosphohydrolase"
       - metabolites: !!omap
           - MAM00553c: 1
           - MAM02040c: -1
@@ -124510,7 +124502,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR06553"
-      - name: ""
+      - name: "1-phosphatidyl-1D-myo-inositol-4,5-bisphosphate 4-phosphohydrolase"
       - metabolites: !!omap
           - MAM00554c: 1
           - MAM02040c: -1
@@ -124527,7 +124519,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR06554"
-      - name: ""
+      - name: "ATP:1-phosphatidyl-1D-myo-inositol-5-phosphate 4-phosphotransferase"
       - metabolites: !!omap
           - MAM00554c: -1
           - MAM01285c: 1
@@ -124545,7 +124537,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR06555"
-      - name: ""
+      - name: "ATP:1-phosphatidyl-1D-myo-inositol-4,5-bisphosphate 3-phosphotransferase"
       - metabolites: !!omap
           - MAM01285c: 1
           - MAM01371c: -1
@@ -124563,7 +124555,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR06556"
-      - name: ""
+      - name: "Phosphatidylinositol-3,4,5-trisphosphate 3-phosphohydrolase"
       - metabolites: !!omap
           - MAM02040c: -1
           - MAM02734c: -1
@@ -124580,7 +124572,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR06557"
-      - name: ""
+      - name: "1-phosphatidyl-1D-myo-inositol-3,4,5-trisphosphate 5-phosphohydrolase"
       - metabolites: !!omap
           - MAM00551c: 1
           - MAM02040c: -1
@@ -124614,7 +124606,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR06559"
-      - name: ""
+      - name: "1-Phosphatidyl-1D-myo-inositol-4,5-bisphosphate inositoltrisphosphohydrolase"
       - metabolites: !!omap
           - MAM00237c: 1
           - MAM01718c: 1
@@ -124632,7 +124624,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR06560"
-      - name: ""
+      - name: "D-myo-Inositol-1,4,5-trisphosphate 5-phosphohydrolase"
       - metabolites: !!omap
           - MAM00526c: 1
           - MAM01718c: -1
@@ -124649,7 +124641,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR06561"
-      - name: ""
+      - name: "D-myo-Inositol-1,4-bisphosphate 1-phosphohydrolase"
       - metabolites: !!omap
           - MAM00526c: -1
           - MAM00530c: 1
@@ -124666,7 +124658,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR06562"
-      - name: ""
+      - name: "1D-myo-inositol 4-phosphate phosphohydrolase"
       - metabolites: !!omap
           - MAM00530c: -1
           - MAM02040c: -1
@@ -124683,7 +124675,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR06563"
-      - name: ""
+      - name: "ATP:1D-myo-inositol-1,4,5-trisphosphate 3-phosphotransferase"
       - metabolites: !!omap
           - MAM00522c: 1
           - MAM01285c: 1
@@ -124701,7 +124693,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR06564"
-      - name: ""
+      - name: "D-myo-Inositol 1,3,4,5-tetrakisphosphate 3-phosphohydrolase"
       - metabolites: !!omap
           - MAM00522c: -1
           - MAM01718c: 1
@@ -124718,7 +124710,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR06565"
-      - name: ""
+      - name: "D-myo-Inositol 1,3,4,5-tetrakisphosphate 5-phosphohydrolase"
       - metabolites: !!omap
           - MAM00522c: -1
           - MAM00524c: 1
@@ -124735,7 +124727,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR06568"
-      - name: ""
+      - name: "ATP:1D-myo-inositol-1,3,4,6-tetrakisphosphate 5-phosphotransferase"
       - metabolites: !!omap
           - MAM00521c: 1
           - MAM00523c: -1
@@ -124753,7 +124745,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR06569"
-      - name: ""
+      - name: "D-myo-Inositol 1,3,4-trisphosphate 1-phosphohydrolase"
       - metabolites: !!omap
           - MAM00524c: -1
           - MAM00528c: 1
@@ -124770,7 +124762,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR06570"
-      - name: ""
+      - name: "D-myo-Inositol-3,4-bisphosphate 4-phosphohydrolase"
       - metabolites: !!omap
           - MAM00528c: -1
           - MAM00529c: 1
@@ -124787,7 +124779,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR06571"
-      - name: ""
+      - name: "1D-myo-inositol 3-phosphate phosphohydrolase"
       - metabolites: !!omap
           - MAM00529c: -1
           - MAM02040c: -1
@@ -124804,7 +124796,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR06572"
-      - name: ""
+      - name: "1D-myo-inositol-3-phosphate lyase (isomerizing)"
       - metabolites: !!omap
           - MAM00529c: 1
           - MAM01968c: -1
@@ -124819,7 +124811,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR06573"
-      - name: ""
+      - name: "ATP:1D-myo-inositol-1,4,5-trisphosphate 6-phosphotransferase"
       - metabolites: !!omap
           - MAM00525c: 1
           - MAM01285c: 1
@@ -124837,7 +124829,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR06574"
-      - name: ""
+      - name: "ATP:1D-myo-inositol-1,4,5,6-tetrakisphosphate 3-phosphotransferase"
       - metabolites: !!omap
           - MAM00521c: 1
           - MAM00525c: -1
@@ -124855,7 +124847,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR06576"
-      - name: ""
+      - name: "ATP:1D-myo-inositol 1,3,4,5,6-pentakisphosphate 2-phosphotransferase"
       - metabolites: !!omap
           - MAM00521c: -1
           - MAM01285c: 1
@@ -125085,7 +125077,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR07652"
-      - name: ""
+      - name: "ATP:1D-myo-inositol-hexakisphosphate 5-phosphotransferase"
       - metabolites: !!omap
           - MAM01133c: 1
           - MAM01285c: 1
@@ -125102,7 +125094,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR07654"
-      - name: ""
+      - name: "5-Diphosphoinositol pentakisphosphate diphosphohydrolase"
       - metabolites: !!omap
           - MAM01133n: -1
           - MAM02039n: 1
@@ -125120,7 +125112,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR07655"
-      - name: ""
+      - name: "5-Diphosphoinositol pentakisphosphate diphosphohydrolase"
       - metabolites: !!omap
           - MAM01133c: -1
           - MAM02039c: 1
@@ -125138,7 +125130,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR07656"
-      - name: ""
+      - name: "ATP:1D-myo-inositol-5-diphosphate-pentakisphosphate phosphotransferase"
       - metabolites: !!omap
           - MAM00531c: 1
           - MAM01133c: -1
@@ -125173,7 +125165,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR08800"
-      - name: ""
+      - name: "ATP:1D-myo-inositol-1,3,4,6-tetrakisphosphate 5-phosphotransferase"
       - metabolites: !!omap
           - MAM00521n: 1
           - MAM00523n: -1
@@ -125208,7 +125200,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR08802"
-      - name: ""
+      - name: "D-myo-Inositol-1,3-bisphosphate 3-phosphohydrolase"
       - metabolites: !!omap
           - MAM02040c: -1
           - MAM02172c: -1
@@ -125225,7 +125217,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR08803"
-      - name: ""
+      - name: "ATP:1D-myo-inositol-1,4,5,6-tetrakisphosphate 3-phosphotransferase"
       - metabolites: !!omap
           - MAM00521n: 1
           - MAM00525n: -1
@@ -125243,7 +125235,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR08804"
-      - name: ""
+      - name: "ATP:1D-myo-inositol-1,4,5-trisphosphate 6-phosphotransferase"
       - metabolites: !!omap
           - MAM00525n: 1
           - MAM01285n: 1
@@ -125261,7 +125253,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR08805"
-      - name: ""
+      - name: "ATP:1D-myo-inositol-1,4,5-trisphosphate 3-phosphotransferase"
       - metabolites: !!omap
           - MAM00522n: 1
           - MAM01285n: 1
@@ -125296,7 +125288,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR08807"
-      - name: ""
+      - name: "Phosphatidylinositol-3,4,5-trisphosphate 3-phosphohydrolase"
       - metabolites: !!omap
           - MAM02040n: -1
           - MAM02734n: -1
@@ -125313,7 +125305,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR08809"
-      - name: ""
+      - name: "1-Phosphatidyl-1D-myo-inositol 3,4-bisphosphate 3-phosphohydrolase"
       - metabolites: !!omap
           - MAM00551n: -1
           - MAM00553n: 1
@@ -125330,7 +125322,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR08810"
-      - name: ""
+      - name: "1-phosphatidyl-1D-myo-inositol-3,4-bisphosphate 4-phosphohydrolase"
       - metabolites: !!omap
           - MAM00551n: -1
           - MAM00552n: 1
@@ -125365,7 +125357,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR08812"
-      - name: ""
+      - name: "1-Phosphatidyl-1D-myo-inositol 3-phosphate 3-phosphohydrolase"
       - metabolites: !!omap
           - MAM00552n: -1
           - MAM02040n: -1
@@ -125436,7 +125428,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR08816"
-      - name: ""
+      - name: "ATP:1-phosphatidyl-1D-myo-inositol-4,5-bisphosphate 3-phosphotransferase"
       - metabolites: !!omap
           - MAM01285n: 1
           - MAM01371n: -1
@@ -125454,7 +125446,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR08817"
-      - name: ""
+      - name: "Phosphatidyl-myo-inositol-4,5-bisphosphate 4-phosphohydrolase"
       - metabolites: !!omap
           - MAM00553n: 1
           - MAM02040n: -1
@@ -125471,7 +125463,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR08818"
-      - name: ""
+      - name: "1-Phosphatidyl-1D-myo-inositol-4,5-bisphosphate inositoltrisphosphohydrolase"
       - metabolites: !!omap
           - MAM00237n: 1
           - MAM01718n: 1
@@ -125489,7 +125481,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR08819"
-      - name: ""
+      - name: "ATP:1-phosphatidyl-1D-myo-inositol-4-phosphate 3-phosphotransferase"
       - metabolites: !!omap
           - MAM00551n: 1
           - MAM00553n: -1
@@ -125507,7 +125499,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR08820"
-      - name: ""
+      - name: "ATP:1-Phosphatidyl-1D-myo-inositol 4-phosphotransferase"
       - metabolites: !!omap
           - MAM00553n: -1
           - MAM02040n: -1
@@ -125524,7 +125516,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR08821"
-      - name: ""
+      - name: "ATP:1-phosphatidyl-1D-myo-inositol-4-phosphate 5-phosphotransferase"
       - metabolites: !!omap
           - MAM00553n: -1
           - MAM01285n: 1
@@ -125614,7 +125606,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR08826"
-      - name: ""
+      - name: "ATP:1-phosphatidyl-1D-myo-inositol-5-phosphate 4-phosphotransferase"
       - metabolites: !!omap
           - MAM00554n: -1
           - MAM01285n: 1
@@ -125632,7 +125624,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR08827"
-      - name: ""
+      - name: "ATP:1-phosphatidyl-1D-myo-inositol 3-phosphotransferase"
       - metabolites: !!omap
           - MAM00552r: 1
           - MAM01285r: 1
@@ -125650,7 +125642,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR08829"
-      - name: ""
+      - name: "ATP:1-phosphatidyl-1D-myo-inositol 3-phosphotransferase"
       - metabolites: !!omap
           - MAM00552n: 1
           - MAM01285n: 1
@@ -125668,7 +125660,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR08830"
-      - name: ""
+      - name: "ATP:1-Phosphatidyl-1D-myo-inositol 4-phosphotransferase"
       - metabolites: !!omap
           - MAM00553n: 1
           - MAM01285n: 1
@@ -125760,7 +125752,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03923"
-      - name: ""
+      - name: "glycine:NAD+ 2-oxidoreductase (tetrahydrofolate-methylene-adding)"
       - metabolites: !!omap
           - MAM01045m: 1
           - MAM01596m: 1
@@ -125781,7 +125773,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03925"
-      - name: ""
+      - name: "5,6,7,8-tetrahydrobiopterin:NAD+ oxidoreductase"
       - metabolites: !!omap
           - MAM01698c: -1
           - MAM02039c: -1
@@ -125816,7 +125808,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04332"
-      - name: ""
+      - name: "5,6,7,8-tetrahydrofolate:NAD+ oxidoreductase"
       - metabolites: !!omap
           - MAM01700c: -1
           - MAM02039c: -1
@@ -125834,7 +125826,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04333"
-      - name: ""
+      - name: "5,6,7,8-tetrahydrofolate:NADP+ oxidoreductase"
       - metabolites: !!omap
           - MAM01700c: -1
           - MAM02039c: -1
@@ -125852,7 +125844,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04335"
-      - name: ""
+      - name: "5,6,7,8-tetrahydrofolate:NADP+ oxidoreductase"
       - metabolites: !!omap
           - MAM01700m: -1
           - MAM02039m: -1
@@ -125870,7 +125862,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04336"
-      - name: ""
+      - name: "10-formyltetrahydrofolate:NADP+ oxidoreductase"
       - metabolites: !!omap
           - MAM00266c: -1
           - MAM01596c: 1
@@ -125890,7 +125882,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04338"
-      - name: ""
+      - name: "Formate:tetrahydrofolate ligase (ADP-forming)"
       - metabolites: !!omap
           - MAM00266c: 1
           - MAM01285c: 1
@@ -125909,7 +125901,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04340"
-      - name: ""
+      - name: "Formate:tetrahydrofolate ligase (ADP-forming)"
       - metabolites: !!omap
           - MAM00266m: 1
           - MAM01285m: 1
@@ -125928,7 +125920,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04440"
-      - name: ""
+      - name: "5,10-methylenetetrahydrofolate:NAD+ oxidoreductase"
       - metabolites: !!omap
           - MAM01044m: -1
           - MAM01045m: 1
@@ -125945,7 +125937,7 @@
       - confidence_score: 2
     - !!omap
       - id: "MAR04442"
-      - name: ""
+      - name: "5,10-methylenetetrahydrofolate:NADP+ oxidoreductase"
       - metabolites: !!omap
           - MAM01044c: -1
           - MAM01045c: 1
@@ -125962,7 +125954,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04444"
-      - name: ""
+      - name: "5,10-methylenetetrahydrofolate:NADP+ oxidoreductase"
       - metabolites: !!omap
           - MAM01044m: -1
           - MAM01045m: 1
@@ -125979,7 +125971,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04446"
-      - name: ""
+      - name: "5-methyltetrahydrofolate:NADP+ oxidoreductase"
       - metabolites: !!omap
           - MAM01045c: -1
           - MAM01115c: 1
@@ -125997,7 +125989,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04448"
-      - name: ""
+      - name: "5-methyltetrahydrofolate:NAD+ oxidoreductase"
       - metabolites: !!omap
           - MAM01045c: -1
           - MAM01115c: 1
@@ -126015,7 +126007,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04503"
-      - name: ""
+      - name: "5,10-Methenyltetrahydrofolate 5-hydrolase (decyclizing)"
       - metabolites: !!omap
           - MAM00266c: -1
           - MAM01044c: 1
@@ -126032,7 +126024,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04505"
-      - name: ""
+      - name: "5,10-Methenyltetrahydrofolate 5-hydrolase (decyclizing)"
       - metabolites: !!omap
           - MAM00266m: -1
           - MAM01044m: 1
@@ -126049,7 +126041,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04654"
-      - name: ""
+      - name: "dihydrofolate:NAD+ oxidoreductase"
       - metabolites: !!omap
           - MAM01700c: 1
           - MAM01830c: -1
@@ -126066,7 +126058,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04655"
-      - name: ""
+      - name: "dihydrofolate:NADP+ oxidoreductase"
       - metabolites: !!omap
           - MAM01700c: 1
           - MAM01830c: -1
@@ -126083,7 +126075,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04656"
-      - name: ""
+      - name: "dihydrofolate:NADP+ oxidoreductase"
       - metabolites: !!omap
           - MAM01700m: 1
           - MAM01830m: -1
@@ -126100,7 +126092,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04665"
-      - name: ""
+      - name: "S-Aminomethyldihydrolipoylprotein:(6S)-tetrahydrofolate aminomethyltransferase (ammonia-forming)"
       - metabolites: !!omap
           - MAM01044m: -1
           - MAM01100m: 1
@@ -126117,7 +126109,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04666"
-      - name: ""
+      - name: "5-Formyltetrahydrofolate cyclo-ligase (ADP-forming)"
       - metabolites: !!omap
           - MAM01044m: 1
           - MAM01100m: -1
@@ -126135,7 +126127,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR07145"
-      - name: ""
+      - name: "GTP 3',8-cyclase [(8S)-3',8-cyclo-7,8-dihydroguanosine 5'-triphosphate-forming]"
       - metabolites: !!omap
           - MAM01618c: 1
           - MAM02034c: -1
@@ -126152,7 +126144,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR07146"
-      - name: ""
+      - name: "thiocarboxylated molybdopterin synthase:cyclic pyranopterin phosphate sulfurtransferase"
       - metabolites: !!omap
           - MAM01618c: -1
           - MAM02039c: -7
@@ -126173,7 +126165,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR07147"
-      - name: ""
+      - name: "ATP:molybdopterin adenylyltransferase"
       - metabolites: !!omap
           - MAM01281c: 1
           - MAM01371c: -1
@@ -126191,7 +126183,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR07908"
-      - name: ""
+      - name: "10-Formyltetrahydrofolate:L-glutamate ligase (ADP-forming)"
       - metabolites: !!omap
           - MAM00266c: -1
           - MAM00267c: 1
@@ -126211,7 +126203,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR07909"
-      - name: ""
+      - name: "10-Formyltetrahydrofolate:L-glutamate ligase (ADP-forming)"
       - metabolites: !!omap
           - MAM00266m: -1
           - MAM00267m: 1
@@ -126687,7 +126679,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR08132"
-      - name: ""
+      - name: "tetrahydropteroyl-poly-gamma-glutamate gamma-glutamylhydrolase"
       - metabolites: !!omap
           - MAM01974e: 4
           - MAM02040e: -4
@@ -126704,7 +126696,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR08133"
-      - name: ""
+      - name: "tetrahydropteroyl-poly-gamma-glutamate gamma-glutamylhydrolase"
       - metabolites: !!omap
           - MAM01974l: 4
           - MAM02040l: -4
@@ -126857,7 +126849,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR08143"
-      - name: ""
+      - name: "5-Formyltetrahydrofolate cyclo-ligase (ADP-forming)"
       - metabolites: !!omap
           - MAM01044c: 1
           - MAM01100c: -1
@@ -126875,7 +126867,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR08144"
-      - name: ""
+      - name: "5,10-methylenetetrahydrofolate:NAD+ oxidoreductase"
       - metabolites: !!omap
           - MAM01044c: -1
           - MAM01045c: 1
@@ -126892,7 +126884,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR08758"
-      - name: ""
+      - name: "formate:NAD+ oxidoreductase"
       - metabolites: !!omap
           - MAM01596c: 1
           - MAM01833c: -1
@@ -126909,7 +126901,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR07661"
-      - name: ""
+      - name: "N6-D-Biotinyl-L-lysine amidohydrolase"
       - metabolites: !!omap
           - MAM01400c: -1
           - MAM01401c: 1
@@ -126926,7 +126918,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR07662"
-      - name: ""
+      - name: "N6-D-Biotinyl-L-lysine amidohydrolase"
       - metabolites: !!omap
           - MAM01400n: -1
           - MAM01401n: 1
@@ -126943,7 +126935,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR07663"
-      - name: ""
+      - name: "N6-D-Biotinyl-L-lysine amidohydrolase"
       - metabolites: !!omap
           - MAM01400e: -1
           - MAM01401e: 1
@@ -126960,7 +126952,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR07668"
-      - name: ""
+      - name: "biotin:CoA ligase (AMP-forming)"
       - metabolites: !!omap
           - MAM01371c: -1
           - MAM01401c: -1
@@ -126996,7 +126988,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR07670"
-      - name: ""
+      - name: "Biotinyl-5'-AMP:apo-[carboxylase] ligase (AMP-forming)"
       - metabolites: !!omap
           - MAM01334c: 1
           - MAM01356c: -1
@@ -127031,7 +127023,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR07672"
-      - name: ""
+      - name: "biotin-carboxyl-carrier-protein:carbon-dioxide ligase (ADP-forming)"
       - metabolites: !!omap
           - MAM01285c: 1
           - MAM01357c: -1
@@ -127051,7 +127043,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR07673"
-      - name: ""
+      - name: "carboxybiotin-carboxyl-carrier-protein:acetyl-CoA carboxytransferase"
       - metabolites: !!omap
           - MAM01261c: -1
           - MAM01357c: 1
@@ -127068,7 +127060,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04160"
-      - name: ""
+      - name: "GTP 7,8-8,9-dihydrolase"
       - metabolites: !!omap
           - MAM01155c: 1
           - MAM01833c: 1
@@ -127086,7 +127078,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04162"
-      - name: ""
+      - name: "GTP 7,8-8,9-dihydrolase"
       - metabolites: !!omap
           - MAM01155n: 1
           - MAM01833n: 1
@@ -127104,7 +127096,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04163"
-      - name: ""
+      - name: "2-amino-4-hydroxy-6-(erythro-1,2,3-trihydroxypropyl) dihydropteridine triphosphate lyase"
       - metabolites: !!omap
           - MAM01155c: -1
           - MAM01170c: 1
@@ -127120,7 +127112,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04165"
-      - name: ""
+      - name: "tetrahydrobiopterin:NADP+ oxidoreductase (6-pyruvoyltetrahydropterin-forming)"
       - metabolites: !!omap
           - MAM01170c: -1
           - MAM02039c: -2
@@ -127138,7 +127130,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04166"
-      - name: ""
+      - name: "6-Lactoyl-5,6,7,8-tetrahydropterin:NADP+ 2'-oxidoreductase"
       - metabolites: !!omap
           - MAM01164c: 1
           - MAM01170c: -1
@@ -127156,7 +127148,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04167"
-      - name: ""
+      - name: "tetrahydrobiopterin:NADP+ oxidoreductase"
       - metabolites: !!omap
           - MAM01164c: -1
           - MAM02039c: -1
@@ -127174,7 +127166,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04169"
-      - name: ""
+      - name: "GTP 8,9-hydrolase"
       - metabolites: !!omap
           - MAM01832c: 1
           - MAM02034c: -1
@@ -127190,7 +127182,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04170"
-      - name: ""
+      - name: "GTP 8,9-hydrolase"
       - metabolites: !!omap
           - MAM01832n: 1
           - MAM02034n: -1
@@ -127206,7 +127198,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04523"
-      - name: ""
+      - name: "5,6,7,8-tetrahydrobiopterin:NADP+ oxidoreductase"
       - metabolites: !!omap
           - MAM01698c: -1
           - MAM02039c: -1
@@ -127286,7 +127278,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04543"
-      - name: ""
+      - name: "4a-hydroxytetrahydrobiopterin hydro-lyase"
       - metabolites: !!omap
           - MAM00965c: -1
           - MAM02040c: 1
@@ -127302,7 +127294,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04544"
-      - name: ""
+      - name: "4a-hydroxytetrahydrobiopterin hydro-lyase"
       - metabolites: !!omap
           - MAM00965n: -1
           - MAM02040n: 1
@@ -127318,7 +127310,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04816"
-      - name: ""
+      - name: "7,8-dihydroneopterin-3'-triphosphate phosphohydrolase (alkaline optimum)"
       - metabolites: !!omap
           - MAM01155c: -1
           - MAM01704c: 1
@@ -127336,7 +127328,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04817"
-      - name: ""
+      - name: "2-amino-4-hydroxy-6-(erythro-1,2,3-trihydroxypropyl) dihydropteridine triphosphate hydrolase"
       - metabolites: !!omap
           - MAM00574c: -1
           - MAM01155c: 1
@@ -127352,7 +127344,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04818"
-      - name: ""
+      - name: "2-amino-4-hydroxy-6-(erythro-1,2,3-trihydroxypropyl) dihydropteridine triphosphate hydrolase"
       - metabolites: !!omap
           - MAM00574n: -1
           - MAM01155n: 1
@@ -127368,7 +127360,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04833"
-      - name: ""
+      - name: "formamidopyrimidine nucleoside triphosphate amidohydrolase"
       - metabolites: !!omap
           - MAM00575c: -1
           - MAM01832c: 1
@@ -127386,7 +127378,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04834"
-      - name: ""
+      - name: "formamidopyrimidine nucleoside triphosphate amidohydrolase"
       - metabolites: !!omap
           - MAM00575n: -1
           - MAM01832n: 1
@@ -127404,7 +127396,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04835"
-      - name: ""
+      - name: "2,5-diaminopyrimidine nucleoside triphosphate mutase"
       - metabolites: !!omap
           - MAM00574c: -1
           - MAM00575c: 1
@@ -127419,7 +127411,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04836"
-      - name: ""
+      - name: "2,5-diaminopyrimidine nucleoside triphosphate mutase"
       - metabolites: !!omap
           - MAM00574n: -1
           - MAM00575n: 1
@@ -127434,7 +127426,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR08538"
-      - name: ""
+      - name: "4a-hydroxytetrahydrobiopterin hydro-lyase"
       - metabolites: !!omap
           - MAM00965c: -1
           - MAM01698c: 1
@@ -127450,7 +127442,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR08738"
-      - name: ""
+      - name: "2-amino-4-hydroxy-6-(erythro-1,2,3-trihydroxypropyl) dihydropteridine triphosphate lyase"
       - metabolites: !!omap
           - MAM01155n: -1
           - MAM01170n: 1
@@ -127466,7 +127458,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR08739"
-      - name: ""
+      - name: "tetrahydrobiopterin:NADP+ oxidoreductase (6-pyruvoyltetrahydropterin-forming)"
       - metabolites: !!omap
           - MAM01170n: -1
           - MAM02039n: -2
@@ -127588,7 +127580,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR08346"
-      - name: ""
+      - name: "L-Gulono-1,4-lactone lactonohydrolase"
       - metabolites: !!omap
           - MAM02039r: 1
           - MAM02040r: -1
@@ -127623,7 +127615,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR08349"
-      - name: ""
+      - name: "D-Glucuronolactone:NAD+ oxidoreductase"
       - metabolites: !!omap
           - MAM01681c: 1
           - MAM01685c: -1
@@ -127660,7 +127652,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR08620"
-      - name: ""
+      - name: "glutathione:dehydroascorbate oxidoreductase"
       - metabolites: !!omap
           - MAM01368c: 1
           - MAM01655c: -1
@@ -127677,7 +127669,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR08621"
-      - name: ""
+      - name: "L-Dehydroascorbate lactonohydrolase"
       - metabolites: !!omap
           - MAM00573c: 1
           - MAM01655c: -1
@@ -127763,7 +127755,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03991"
-      - name: ""
+      - name: "Fe(II):oxygen oxidoreductase"
       - metabolites: !!omap
           - MAM01821e: -4
           - MAM01822e: 4
@@ -127798,7 +127790,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04744"
-      - name: ""
+      - name: "5-aminolevulinate hydro-lyase (adding 5-aminolevulinate and cyclizing"
       - metabolites: !!omap
           - MAM01074c: -2
           - MAM02039c: 1
@@ -127815,7 +127807,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04746"
-      - name: ""
+      - name: "porphobilinogen:(4-[2-carboxyethyl]-3-[carboxymethyl]pyrrol-2-yl)methyltransferase (hydrolysing)"
       - metabolites: !!omap
           - MAM02039c: 4
           - MAM02040c: -1
@@ -127833,7 +127825,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04748"
-      - name: ""
+      - name: "Hydroxymethylbilane hydro-lyase(cyclizing)"
       - metabolites: !!omap
           - MAM02040c: 1
           - MAM02151c: -1
@@ -127849,7 +127841,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04750"
-      - name: ""
+      - name: "Uroporphyrinogen-III carboxy-lyase"
       - metabolites: !!omap
           - MAM01596c: 4
           - MAM01606c: 1
@@ -127866,7 +127858,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04752"
-      - name: ""
+      - name: "Coproporphyrinogen:oxygen oxidoreductase(decarboxylating)"
       - metabolites: !!omap
           - MAM01596c: 2
           - MAM01606c: -1
@@ -127885,7 +127877,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04755"
-      - name: ""
+      - name: "protoporphyrinogen-IX:oxygen oxidoreductase"
       - metabolites: !!omap
           - MAM02041m: 3
           - MAM02630m: -3
@@ -127902,7 +127894,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04757"
-      - name: ""
+      - name: "protoporphyrinogen-IX:oxygen oxidoreductase"
       - metabolites: !!omap
           - MAM02041c: 3
           - MAM02630c: -3
@@ -127919,7 +127911,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04762"
-      - name: ""
+      - name: "Cytochrome c apocytochrome-c-lyase"
       - metabolites: !!omap
           - MAM01358m: -1
           - MAM01631m: 1
@@ -127958,7 +127950,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04764"
-      - name: ""
+      - name: "Bilirubin:NAD+ oxidoreductase"
       - metabolites: !!omap
           - MAM01396c: 1
           - MAM01399c: -1
@@ -128040,7 +128032,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04772"
-      - name: ""
+      - name: "Uroporphyrinogen I carboxy-lyase"
       - metabolites: !!omap
           - MAM01596c: 4
           - MAM01605c: 1
@@ -128091,7 +128083,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR08634"
-      - name: ""
+      - name: "Bilirubin:NADP+ oxidoreductase"
       - metabolites: !!omap
           - MAM01396c: 1
           - MAM01399c: -1
@@ -128125,7 +128117,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR06630"
-      - name: ""
+      - name: "retinol: NADP+ oxidoreductase"
       - metabolites: !!omap
           - MAM02039c: 1
           - MAM02554c: -1
@@ -128143,7 +128135,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR06631"
-      - name: ""
+      - name: "retinol:NAD+ oxidoreductase"
       - metabolites: !!omap
           - MAM02039c: 1
           - MAM02552c: -1
@@ -128161,7 +128153,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR06632"
-      - name: ""
+      - name: "retinol: NADP+ oxidoreductase"
       - metabolites: !!omap
           - MAM02039r: 1
           - MAM02554r: -1
@@ -128179,7 +128171,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR06633"
-      - name: ""
+      - name: "retinol:NAD+ oxidoreductase"
       - metabolites: !!omap
           - MAM02039r: 1
           - MAM02552r: -1
@@ -128197,7 +128189,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR06635"
-      - name: ""
+      - name: "phosphatidylcholine:retinol O-acyltransferase"
       - metabolites: !!omap
           - MAM00535c: 1
           - MAM02684c: -1
@@ -128232,7 +128224,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR06637"
-      - name: ""
+      - name: "all-trans-retinyl ester acylhydrolase, 11-cis-retinol forming"
       - metabolites: !!omap
           - MAM00291c: 1
           - MAM02039c: 1
@@ -128250,7 +128242,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR06638"
-      - name: ""
+      - name: "11-cis-retinol:NAD+ oxidoreductase"
       - metabolites: !!omap
           - MAM00290c: -1
           - MAM00291c: 1
@@ -128268,7 +128260,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR06639"
-      - name: ""
+      - name: "phosphatidylcholine:retinol O-acyltransferase"
       - metabolites: !!omap
           - MAM00291c: -1
           - MAM00535c: 1
@@ -128301,7 +128293,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR06644"
-      - name: ""
+      - name: "9-cis-retinol:NAD+ oxidoreductase"
       - metabolites: !!omap
           - MAM01230c: -1
           - MAM01232c: 1
@@ -128319,7 +128311,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR06646"
-      - name: ""
+      - name: "retinal:NAD+ oxidoreductase"
       - metabolites: !!omap
           - MAM02039c: 2
           - MAM02040c: -1
@@ -128338,7 +128330,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR06647"
-      - name: ""
+      - name: "retinal:NAD+ oxidoreductase"
       - metabolites: !!omap
           - MAM02039r: 2
           - MAM02040r: -1
@@ -128577,7 +128569,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR06671"
-      - name: ""
+      - name: "Palmitoyl-CoA:retinol O-acyltransferase"
       - metabolites: !!omap
           - MAM00291c: -1
           - MAM00292c: 1
@@ -128916,7 +128908,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR08697"
-      - name: ""
+      - name: "beta-carotene:oxygen 15,15'-oxidoreductase (bond-cleaving)"
       - metabolites: !!omap
           - MAM01385c: -1
           - MAM02630c: -1
@@ -129052,7 +129044,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR08709"
-      - name: ""
+      - name: "11-cis-retinol: NADP+ oxidoreductase"
       - metabolites: !!omap
           - MAM00290c: -1
           - MAM00291c: 1
@@ -129070,7 +129062,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR08711"
-      - name: ""
+      - name: "all-trans-Retinol 11-cis-trans-isomerase"
       - metabolites: !!omap
           - MAM00291c: -1
           - MAM02834c: 1
@@ -129138,7 +129130,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR06506"
-      - name: ""
+      - name: "ATP:riboflavin 5'-phosphotransferase"
       - metabolites: !!omap
           - MAM01285c: 1
           - MAM01371c: -1
@@ -129156,7 +129148,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR06507"
-      - name: ""
+      - name: "riboflavin-5-phosphate phosphohydrolase"
       - metabolites: !!omap
           - MAM01828c: -1
           - MAM02040c: -1
@@ -129173,7 +129165,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR06508"
-      - name: ""
+      - name: "ATP:FMN adenylyltransferase"
       - metabolites: !!omap
           - MAM01371c: -1
           - MAM01802c: 1
@@ -129191,7 +129183,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR06510"
-      - name: ""
+      - name: "FADH2:NAD+ oxidoreductase"
       - metabolites: !!omap
           - MAM01802c: -1
           - MAM01803c: 1
@@ -129209,7 +129201,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR06511"
-      - name: ""
+      - name: "FADH2:NADP+ oxidoreductase"
       - metabolites: !!omap
           - MAM01802c: -1
           - MAM01803c: 1
@@ -129227,7 +129219,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04537"
-      - name: ""
+      - name: "L-tryptophan,tetrahydrobiopterin:oxygen oxidoreductase(5-hydroxylating)"
       - metabolites: !!omap
           - MAM00965c: 1
           - MAM01107c: 1
@@ -129245,7 +129237,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04545"
-      - name: ""
+      - name: "5-Hydroxy-L-tryptophan decarboxy-lyase"
       - metabolites: !!omap
           - MAM01107c: -1
           - MAM01596c: 1
@@ -129348,7 +129340,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04558"
-      - name: ""
+      - name: "5-Hydroxytryptamine:oxygen oxidoreductase(deaminating)(flavin-containing)"
       - metabolites: !!omap
           - MAM01102c: 1
           - MAM02039c: 1
@@ -129368,7 +129360,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04559"
-      - name: ""
+      - name: "5-Hydroxyindoleacetaldehyde:NAD+ oxidoreductase"
       - metabolites: !!omap
           - MAM01102c: -1
           - MAM01103c: 1
@@ -129387,7 +129379,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04560"
-      - name: ""
+      - name: "5-hydroxyindoleacetaldehyde:oxygen oxidoreductase"
       - metabolites: !!omap
           - MAM01102c: -1
           - MAM01103c: 1
@@ -129424,7 +129416,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04204"
-      - name: ""
+      - name: "ATP:thiamine diphosphotransferase"
       - metabolites: !!omap
           - MAM01334c: 1
           - MAM01371c: -1
@@ -129442,7 +129434,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04206"
-      - name: ""
+      - name: "ATP:thiamine-diphosphate phosphotransferase"
       - metabolites: !!omap
           - MAM01285c: 1
           - MAM01371c: -1
@@ -129459,7 +129451,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04208"
-      - name: ""
+      - name: "Thiamin diphosphate phosphohydrolase"
       - metabolites: !!omap
           - MAM02039c: 1
           - MAM02040c: -1
@@ -129477,7 +129469,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR08744"
-      - name: ""
+      - name: "Thiamin diphosphate phosphohydrolase"
       - metabolites: !!omap
           - MAM02039m: 1
           - MAM02040m: -1
@@ -129495,7 +129487,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR08746"
-      - name: ""
+      - name: "pyruvate:thiamin diphosphate acetaldehydetransferase (decarboxylating)"
       - metabolites: !!omap
           - MAM00561c: 1
           - MAM01596c: 1
@@ -129513,7 +129505,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR08748"
-      - name: ""
+      - name: "thiamin monophosphate phosphohydrolase"
       - metabolites: !!omap
           - MAM02040c: -1
           - MAM02751c: 1
@@ -129549,7 +129541,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04064"
-      - name: ""
+      - name: "pyridoxal-5'-phosphate phosphohydrolase"
       - metabolites: !!omap
           - MAM02040c: -1
           - MAM02751c: 1
@@ -129566,7 +129558,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04065"
-      - name: ""
+      - name: "ATP:pyridoxal 5'-phosphotransferase"
       - metabolites: !!omap
           - MAM01285c: 1
           - MAM01371c: -1
@@ -129584,7 +129576,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04066"
-      - name: ""
+      - name: "ATP:pyridoxine 5'-phosphotransferase"
       - metabolites: !!omap
           - MAM01285c: 1
           - MAM01371c: -1
@@ -129602,7 +129594,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04067"
-      - name: ""
+      - name: "pyridoxine 5'-phosphate:oxygen oxidoreductase"
       - metabolites: !!omap
           - MAM02041c: 1
           - MAM02630c: -1
@@ -129619,7 +129611,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04068"
-      - name: ""
+      - name: "ATP:pyridoxal 5'-phosphotransferase"
       - metabolites: !!omap
           - MAM01285c: 1
           - MAM01371c: -1
@@ -129637,7 +129629,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04069"
-      - name: ""
+      - name: "pyridoxamine-5'-phosphate:oxygen oxidoreductase (deaminating)"
       - metabolites: !!omap
           - MAM02039c: 1
           - MAM02040c: -1
@@ -129657,7 +129649,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04070"
-      - name: ""
+      - name: "pyridoxamine:oxygen oxidoreductase (deaminating)"
       - metabolites: !!omap
           - MAM02039c: 1
           - MAM02040c: -1
@@ -129677,7 +129669,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04071"
-      - name: ""
+      - name: "pyridoxine:oxygen oxidoreductase (deaminating)"
       - metabolites: !!omap
           - MAM02041c: -1
           - MAM02630c: 1
@@ -129694,7 +129686,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR08102"
-      - name: ""
+      - name: "pyridoxal:oxygen 4-oxidoreductase"
       - metabolites: !!omap
           - MAM01033c: 1
           - MAM02040c: -1
@@ -129712,7 +129704,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR08724"
-      - name: ""
+      - name: "pyridoxamine-5'-phosphate phosphohydrolase"
       - metabolites: !!omap
           - MAM02040c: -1
           - MAM02751c: 1
@@ -129729,7 +129721,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR08725"
-      - name: ""
+      - name: "pyridoxine-5'-phosphate phosphohydrolase"
       - metabolites: !!omap
           - MAM02040c: -1
           - MAM02751c: 1
@@ -129761,7 +129753,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR02115"
-      - name: ""
+      - name: "calciol,NADPH-hemoprotein reductase:oxygen oxidoreductase (25-hydroxylating)"
       - metabolites: !!omap
           - MAM01415c: 1
           - MAM02039c: -1
@@ -129781,7 +129773,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR02117"
-      - name: ""
+      - name: "calciol,NADPH-hemoprotein reductase:oxygen oxidoreductase (25-hydroxylating)"
       - metabolites: !!omap
           - MAM01415m: 1
           - MAM02039m: -1
@@ -129801,7 +129793,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR02118"
-      - name: ""
+      - name: "calcidiol,adrenodoxin:oxygen oxidoreductase (1-hydroxylating)"
       - metabolites: !!omap
           - MAM01415c: -1
           - MAM01417c: 1
@@ -130249,7 +130241,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR08008"
-      - name: ""
+      - name: "calcidiol,adrenodoxin:oxygen oxidoreductase (1-hydroxylating)"
       - metabolites: !!omap
           - MAM01415m: -1
           - MAM01417m: 1
@@ -131001,7 +130993,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR06992"
-      - name: ""
+      - name: "Benzpyrene, NADPH:oxygen oxidoreductase (RH-hydroxylating or -epoxidizing)"
       - metabolites: !!omap
           - MAM01374c: -1
           - MAM01379c: 1
@@ -131021,7 +131013,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR06993"
-      - name: ""
+      - name: "Benzpyrene,NADPH:oxygen oxidoreductase (RH-hydroxylating or -epoxidizing)"
       - metabolites: !!omap
           - MAM01374c: -1
           - MAM01378c: 1
@@ -131041,7 +131033,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR06994"
-      - name: ""
+      - name: "benzpyrene,NADPH:oxygen oxidoreductase (RH-hydroxylating or -epoxidizing)"
       - metabolites: !!omap
           - MAM01374c: -1
           - MAM01375c: 1
@@ -131061,7 +131053,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR06995"
-      - name: ""
+      - name: "4,5-dihydro-4-hydroxy-5-S-glutathionyl-benzo[a]pyrene glutathione-lyase (epoxide-forming)"
       - metabolites: !!omap
           - MAM00944c: -1
           - MAM01375c: 1
@@ -131078,7 +131070,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR06996"
-      - name: ""
+      - name: "benzo[a]pyrene-7,8-oxide hydrolase"
       - metabolites: !!omap
           - MAM01377c: 1
           - MAM01378c: -1
@@ -131109,7 +131101,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR06998"
-      - name: ""
+      - name: "7,8-dihydro-7-hydroxy-8-S-glutathionyl-benzo[a]pyrene hydrolase"
       - metabolites: !!omap
           - MAM01175c: 1
           - MAM01377c: -1
@@ -131127,7 +131119,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR06999"
-      - name: ""
+      - name: "benzo[a]pyrene-7,8-diol, NADPH:oxygen oxidoreductase (RH-hydroxylating or -epoxidizing)"
       - metabolites: !!omap
           - MAM01376c: 1
           - MAM01377c: -1
@@ -131147,7 +131139,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR07000"
-      - name: ""
+      - name: "9-hydroxybenzo[a]pyrene, NADPH:oxygen oxidoreductase (RH-hydroxylating or -epoxidizing)"
       - metabolites: !!omap
           - MAM01241c: -1
           - MAM01242c: 1
@@ -131167,7 +131159,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR07001"
-      - name: ""
+      - name: "naphthalene, NADPH:oxygen oxidoreductase (RH-hydroxylating or -epoxidizing)"
       - metabolites: !!omap
           - MAM00032c: 1
           - MAM02039c: -1
@@ -131187,7 +131179,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR07002"
-      - name: ""
+      - name: "Naphthalene, NADPH:oxygen oxidoreductase (RH-hydroxylating or -epoxidizing)"
       - metabolites: !!omap
           - MAM00034c: 1
           - MAM02039c: -1
@@ -131207,7 +131199,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR07003"
-      - name: ""
+      - name: "(1R)-hydroxy-(2R)-glutathionyl-1,2-dihydronaphthalene glutathione-lyase (epoxide-forming)"
       - metabolites: !!omap
           - MAM00031c: 1
           - MAM00032c: -1
@@ -131224,7 +131216,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR07004"
-      - name: ""
+      - name: "(1R,2S)-naphthalene 1,2-oxide hydrolase"
       - metabolites: !!omap
           - MAM00032c: -1
           - MAM00243c: 1
@@ -131240,7 +131232,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR07005"
-      - name: ""
+      - name: "1,2-Dihydronaphthalene-1,2-diol dehydrogenase"
       - metabolites: !!omap
           - MAM00243c: -1
           - MAM02039c: 1
@@ -131274,7 +131266,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR07007"
-      - name: ""
+      - name: "1,2-Dihydronaphthalene-1,2-diol, NADPH:oxygen oxidoreductase (RH-hydroxylating or -epoxidizing)"
       - metabolites: !!omap
           - MAM00243c: -1
           - MAM00244c: 1
@@ -131360,7 +131352,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR07012"
-      - name: ""
+      - name: "beta-Naphthol, NADPH:oxygen oxidoreductase (RH-hydroxylating or -epoxidizing)"
       - metabolites: !!omap
           - MAM00668c: -1
           - MAM02039c: -1
@@ -131380,7 +131372,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR07013"
-      - name: ""
+      - name: "(1S)-hydroxy-(2S)-glutathionyl-1,2-dihydronaphthalene glutathione-lyase (epoxide-forming)"
       - metabolites: !!omap
           - MAM00033c: 1
           - MAM00034c: -1
@@ -131397,7 +131389,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR07014"
-      - name: ""
+      - name: "(1S,2R)-naphthalene 1,2-oxide hydrolase"
       - metabolites: !!omap
           - MAM00034c: -1
           - MAM00243c: 1
@@ -131503,7 +131495,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR07022"
-      - name: ""
+      - name: "glutathione-S-transferase"
       - metabolites: !!omap
           - MAM01298c: -1
           - MAM01299c: 1
@@ -131520,7 +131512,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR07023"
-      - name: ""
+      - name: "epoxide hydrolase"
       - metabolites: !!omap
           - MAM01295c: 1
           - MAM01298c: -1
@@ -131552,7 +131544,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR07029"
-      - name: ""
+      - name: "trichloroethene:glutathione S-(1,2-dichlorovinyl)transferase"
       - metabolites: !!omap
           - MAM02026c: -1
           - MAM02144c: 1
@@ -131569,7 +131561,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR07030"
-      - name: ""
+      - name: "trichloroethene, NADPH:oxygen oxidoreductase (RH-hydroxylating or -epoxidizing)"
       - metabolites: !!omap
           - MAM02039c: -1
           - MAM02040c: 1
@@ -131624,7 +131616,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR07033"
-      - name: ""
+      - name: "trichloroethene, NADPH:oxygen oxidoreductase (RH-hydroxylating or -epoxidizing)"
       - metabolites: !!omap
           - MAM01441c: 1
           - MAM02039c: -1
@@ -131660,7 +131652,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR07035"
-      - name: ""
+      - name: "Chloral:NAD(P)+ oxidoreductase"
       - metabolites: !!omap
           - MAM01440c: -1
           - MAM02039c: 2
@@ -131678,7 +131670,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR07036"
-      - name: ""
+      - name: "trichloroethanol, NADPH:oxygen oxidoreductase (RH-hydroxylating or -epoxidizing)"
       - metabolites: !!omap
           - MAM02039c: -1
           - MAM02040c: 3
@@ -131716,7 +131708,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR07038"
-      - name: ""
+      - name: "trichloroethanol:NAD+ oxidoreductase"
       - metabolites: !!omap
           - MAM01440c: -1
           - MAM02039c: -1
@@ -131735,7 +131727,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR07039"
-      - name: ""
+      - name: "UDP-glucuronate beta-D-glucuronosyltransferase"
       - metabolites: !!omap
           - MAM02039c: 1
           - MAM03042c: 1
@@ -131753,7 +131745,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR07040"
-      - name: ""
+      - name: "bromobenzene, NADPH:oxygen oxidoreductase (RH-hydroxylating or -epoxidizing)"
       - metabolites: !!omap
           - MAM01403c: -1
           - MAM01407c: 1
@@ -131773,7 +131765,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR07041"
-      - name: ""
+      - name: "3,4-dihydro-3-hydroxy-4-S-glutathionyl bromobenzene glutathione-lyase (epoxide-forming)"
       - metabolites: !!omap
           - MAM00724c: 1
           - MAM01407c: -1
@@ -131790,7 +131782,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR07042"
-      - name: ""
+      - name: "bromobenzene-3,4-oxide hydrolase"
       - metabolites: !!omap
           - MAM01406c: 1
           - MAM01407c: -1
@@ -131821,7 +131813,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR07044"
-      - name: ""
+      - name: "4-bromophenol, NADPH:oxygen oxidoreductase (RH-hydroxylating or -epoxidizing)"
       - metabolites: !!omap
           - MAM00974c: -1
           - MAM00975c: 1
@@ -131888,7 +131880,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR07048"
-      - name: ""
+      - name: "bromobenzene, NADPH:oxygen oxidoreductase (RH-hydroxylating or -epoxidizing)"
       - metabolites: !!omap
           - MAM01403c: -1
           - MAM01405c: 1
@@ -131923,7 +131915,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR07050"
-      - name: ""
+      - name: "2,3-dihydro-2-S-glutathionyl-3-hydroxy bromobenzene glutathione-lyase (epoxide-forming)"
       - metabolites: !!omap
           - MAM00571c: 1
           - MAM01405c: -1
@@ -131940,7 +131932,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR07051"
-      - name: ""
+      - name: "bromobenzene-2,3-oxide hydrolase"
       - metabolites: !!omap
           - MAM01404c: 1
           - MAM01405c: -1
@@ -131996,7 +131988,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR07055"
-      - name: ""
+      - name: "microsomal epoxide hydrolase"
       - metabolites: !!omap
           - MAM00435c: -1
           - MAM02040c: -1
@@ -132032,7 +132024,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR07057"
-      - name: ""
+      - name: "3'-phosphoadenylyl-sulfate:7-hydroxymethyl-12-methylbenz[a]anthracene sulfotransferase"
       - metabolites: !!omap
           - MAM01195c: 1
           - MAM01196c: -1
@@ -132049,7 +132041,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR07058"
-      - name: ""
+      - name: "microsomal epoxide hydrolase"
       - metabolites: !!omap
           - MAM01173c: -1
           - MAM02040c: -1
@@ -132065,7 +132057,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR07059"
-      - name: ""
+      - name: "carbonyl reductase"
       - metabolites: !!omap
           - MAM00929c: 1
           - MAM00932c: -1
@@ -132412,7 +132404,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR07078"
-      - name: ""
+      - name: "1-nitronaphthalene, NADPH:oxygen oxidoreductase (RH-hydroxylating or -epoxidizing)"
       - metabolites: !!omap
           - MAM00545c: -1
           - MAM00546c: 1
@@ -132432,7 +132424,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR07079"
-      - name: ""
+      - name: "1-nitro-5-hydroxy-6-glutathionyl-5,6-dihydronaphthalene glutathione-lyase (epoxide-forming)"
       - metabolites: !!omap
           - MAM00542c: 1
           - MAM00546c: -1
@@ -132449,7 +132441,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR07080"
-      - name: ""
+      - name: "1-nitro-5-glutathionyl-6-hydroxy-5,6-dihydronaphthalene glutathione-lyase (epoxide-forming)"
       - metabolites: !!omap
           - MAM00541c: 1
           - MAM00546c: -1
@@ -132466,7 +132458,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR07081"
-      - name: ""
+      - name: "1-nitronaphthalene-5,6-oxide hydrolase"
       - metabolites: !!omap
           - MAM00540c: 1
           - MAM00546c: -1
@@ -132482,7 +132474,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR07082"
-      - name: ""
+      - name: "1-nitronaphthalene, NADPH:oxygen oxidoreductase (RH-hydroxylating or -epoxidizing)"
       - metabolites: !!omap
           - MAM00545c: -1
           - MAM00547c: 1
@@ -132502,7 +132494,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR07083"
-      - name: ""
+      - name: "1-nitro-7-hydroxy-8-glutathionyl-7,8-dihydronaphthalene glutathione-lyase (epoxide-forming)"
       - metabolites: !!omap
           - MAM00544c: 1
           - MAM00547c: -1
@@ -132519,7 +132511,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR07084"
-      - name: ""
+      - name: "1-nitro-7-glutathionyl-8-hydroxy-7,8-dihydronaphthalene glutathione-lyase (epoxide-forming)"
       - metabolites: !!omap
           - MAM00543c: 1
           - MAM00547c: -1
@@ -132586,7 +132578,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR07088"
-      - name: ""
+      - name: "1,1-dichloroethylene, NADPH:oxygen oxidoreductase (RH-hydroxylating or -epoxidizing)"
       - metabolites: !!omap
           - MAM00228c: -1
           - MAM00568c: 1
@@ -132606,7 +132598,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR07089"
-      - name: ""
+      - name: "S-(2,2-dichloro-1-hydroxy)ethyl-glutathione 2,2-dichloroacetaldehyde-lyase (glutathione-forming)"
       - metabolites: !!omap
           - MAM00568c: -1
           - MAM02026c: -1
@@ -132639,7 +132631,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR07091"
-      - name: ""
+      - name: "1,1-dichloroethylene, NADPH:oxygen oxidoreductase (RH-hydroxylating or -epoxidizing)"
       - metabolites: !!omap
           - MAM00227c: 1
           - MAM00228c: -1
@@ -132659,7 +132651,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR07092"
-      - name: ""
+      - name: "1,1-dichloroethylene-epoxide:glutathione S-(chloroepoxyethyl)transferase [2-(S-glutathionyl)acetyl-chloride-forming]"
       - metabolites: !!omap
           - MAM00227c: -1
           - MAM00565c: 1
@@ -132676,7 +132668,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR07093"
-      - name: ""
+      - name: "2-(S-glutathionyl)acetyl-chloride:glutathione 2-(S-glutathionyl)acetyltransferase"
       - metabolites: !!omap
           - MAM00565c: -1
           - MAM00566c: 1
@@ -132728,7 +132720,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR07096"
-      - name: ""
+      - name: "1,1-dichloroethylene, NADPH:oxygen oxidoreductase (RH-hydroxylating or -epoxidizing)"
       - metabolites: !!omap
           - MAM00228c: -1
           - MAM01444c: 1
@@ -132748,7 +132740,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR07097"
-      - name: ""
+      - name: "chloroacetyl-chloride:glutathione S-chloroacetyltransferase"
       - metabolites: !!omap
           - MAM01444c: -1
           - MAM02026c: -1
@@ -132783,7 +132775,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR07099"
-      - name: ""
+      - name: "1,2-dibromoethane,NADPH:oxygen oxidoreductase (RH-hydroxylating or -epoxidizing)"
       - metabolites: !!omap
           - MAM00242c: -1
           - MAM00636c: 1
@@ -132803,7 +132795,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR07100"
-      - name: ""
+      - name: "2-bromoacetaldehyde:glutathione S-(formylmethyl)transferase"
       - metabolites: !!omap
           - MAM00636c: -1
           - MAM02026c: -1
@@ -132821,7 +132813,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR07103"
-      - name: ""
+      - name: "1,2-dibromoethane:glutathione ethylenetransferase (episulfonium-forming)"
       - metabolites: !!omap
           - MAM00242c: -1
           - MAM01978c: 1
@@ -133109,7 +133101,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR06535"
-      - name: ""
+      - name: "chloride:hydrogen-peroxide oxidoreductase (hypochlorite-forming)"
       - metabolites: !!omap
           - MAM01442c: 1
           - MAM02039c: 1
@@ -133145,7 +133137,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR09569"
-      - name: ""
+      - name: "4-nitrophenyl phosphate phosphohydrolase"
       - metabolites: !!omap
           - MAM01020e: -1
           - MAM02040e: -1
@@ -133162,7 +133154,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03955"
-      - name: ""
+      - name: "carbonate hydro-lyase (carbon-dioxide-forming)"
       - metabolites: !!omap
           - MAM01596c: -1
           - MAM02039c: 1
@@ -133179,7 +133171,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03984"
-      - name: ""
+      - name: "hydrogen-peroxide:hydrogen-peroxide oxidoreductase"
       - metabolites: !!omap
           - MAM02040x: 2
           - MAM02041x: -2
@@ -133195,7 +133187,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04201"
-      - name: ""
+      - name: "methanol:hydrogen-peroxide oxidoreductase"
       - metabolites: !!omap
           - MAM01831c: 1
           - MAM02040c: 2
@@ -133212,7 +133204,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04202"
-      - name: ""
+      - name: "methanol:NAD+ oxidoreductase"
       - metabolites: !!omap
           - MAM01831c: 1
           - MAM02039c: 1
@@ -133262,7 +133254,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR05363"
-      - name: ""
+      - name: "Triphosphate phosphohydrolase"
       - metabolites: !!omap
           - MAM02039c: 1
           - MAM02040c: -1
@@ -133280,7 +133272,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR05406"
-      - name: ""
+      - name: "carbonate hydro-lyase (carbon-dioxide-forming)"
       - metabolites: !!omap
           - MAM01421c: 1
           - MAM01596c: -1
@@ -133312,7 +133304,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR07794"
-      - name: ""
+      - name: "diphosphate phosphohydrolase"
       - metabolites: !!omap
           - MAM02039n: 1
           - MAM02040n: -1
@@ -133329,7 +133321,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR08617"
-      - name: ""
+      - name: "Triphosphate phosphohydrolase"
       - metabolites: !!omap
           - MAM02039m: 1
           - MAM02040m: -1
@@ -133379,7 +133371,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR08751"
-      - name: ""
+      - name: "carbonate hydro-lyase (carbon-dioxide-forming)"
       - metabolites: !!omap
           - MAM01421m: 1
           - MAM01596m: -1
@@ -133412,7 +133404,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR07741"
-      - name: ""
+      - name: "Ferredoxin:NADP+ oxidoreductase"
       - metabolites: !!omap
           - MAM02039m: -1
           - MAM02554m: -1
@@ -133430,7 +133422,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR09464"
-      - name: ""
+      - name: "Dextrin 6-alpha-D-glucanohydrolase"
       - metabolites: !!omap
           - MAM01677c: 1
           - MAM01678c: -1
@@ -133500,7 +133492,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR09470"
-      - name: ""
+      - name: "L-iditol:NAD+ 2-oxidoreductase"
       - metabolites: !!omap
           - MAM02039c: -1
           - MAM02383c: 1
@@ -133691,7 +133683,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR09485"
-      - name: ""
+      - name: "[1,4-(N-Acetyl-beta-D-glucosaminyl)]n glycanohydrolase"
       - metabolites: !!omap
           - MAM01436c: 1
           - MAM01437c: -1
@@ -133708,7 +133700,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR09487"
-      - name: ""
+      - name: "NAD+:poly(adenosine diphosphate D-ribose)ADP-D-ribosyltransferase"
       - metabolites: !!omap
           - MAM00136c: -1
           - MAM00137c: 1
@@ -133726,7 +133718,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR09488"
-      - name: ""
+      - name: "ATP:phosphorylase-b phosphotransferase"
       - metabolites: !!omap
           - MAM00192c: 1
           - MAM00193c: -2
@@ -133743,7 +133735,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR09489"
-      - name: ""
+      - name: "[Phosphorylase a] phosphohydrolase"
       - metabolites: !!omap
           - MAM00192c: -1
           - MAM00193c: 2
@@ -133761,7 +133753,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR09490"
-      - name: ""
+      - name: "Ubiquitin-C-terminal-thiolester hydrolase"
       - metabolites: !!omap
           - MAM02039c: 1
           - MAM02040c: -1
@@ -133798,7 +133790,7 @@
       - confidence_score: 2
     - !!omap
       - id: "MAR09492"
-      - name: ""
+      - name: "Peptidylproline cis-trans-isomerase"
       - metabolites: !!omap
           - MAM02709c: -1
           - MAM02710c: 1
@@ -133813,7 +133805,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR09493"
-      - name: ""
+      - name: "ATP:myosin-light-chain O-phosphotransferase"
       - metabolites: !!omap
           - MAM00190c: -1
           - MAM00191c: 1
@@ -133830,7 +133822,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR09494"
-      - name: ""
+      - name: "[Myosin-light-chain]-phosphate phosphohydrolase"
       - metabolites: !!omap
           - MAM00190c: 1
           - MAM00191c: -1
@@ -133848,7 +133840,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR09495"
-      - name: ""
+      - name: "Acetyl-CoA:histone acetyltransferase"
       - metabolites: !!omap
           - MAM01261c: 1
           - MAM01597c: -1
@@ -133866,7 +133858,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR09496"
-      - name: ""
+      - name: "Protein-glutamine:amine gamma-glutamyltransferase"
       - metabolites: !!omap
           - MAM00201c: -1
           - MAM00207c: 1
@@ -133883,7 +133875,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR09498"
-      - name: ""
+      - name: "DNA-6-O-methylguanine:protein-L-cysteine S-methyltransferase"
       - metabolites: !!omap
           - MAM00200c: -1
           - MAM00216c: 1
@@ -133900,7 +133892,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR09499"
-      - name: ""
+      - name: "S-palmitoylprotein hydrolase"
       - metabolites: !!omap
           - MAM00200c: 1
           - MAM02039c: 1
@@ -133918,7 +133910,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR09500"
-      - name: ""
+      - name: "S-Adenosyl-L-methionine:protein-L-isoaspartate O-methyltransferase"
       - metabolites: !!omap
           - MAM00202c: 1
           - MAM00203c: -1
@@ -133936,7 +133928,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR09501"
-      - name: ""
+      - name: "NADPH:ferricytochrome oxidoreductase"
       - metabolites: !!omap
           - MAM01824c: 2
           - MAM01826c: -2
@@ -133972,7 +133964,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR09503"
-      - name: ""
+      - name: "ATP:rhodopsin phosphotransferase"
       - metabolites: !!omap
           - MAM01285c: 1
           - MAM01371c: -1
@@ -133989,7 +133981,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR09505"
-      - name: ""
+      - name: "alpha-tubulin:L-tyrosine ligase (ADP-forming)"
       - metabolites: !!omap
           - MAM01285c: -1
           - MAM01317c: -1
@@ -134009,7 +134001,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR09506"
-      - name: ""
+      - name: "Polynucleotide 3'-phosphohydrolase"
       - metabolites: !!omap
           - MAM00915c: -1
           - MAM02040c: -1
@@ -134026,7 +134018,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR09507"
-      - name: ""
+      - name: "5'-Phosphopolynucleotide 5'-phosphohydrolase"
       - metabolites: !!omap
           - MAM01129c: -1
           - MAM02040c: -1
@@ -134043,7 +134035,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR09508"
-      - name: ""
+      - name: "GTP:mRNA guanylyltransferase"
       - metabolites: !!omap
           - MAM00096c: -1
           - MAM01864c: 1
@@ -134060,7 +134052,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR09509"
-      - name: ""
+      - name: "S-adenosyl-L-methionine:mRNA (guanine-N7-)-methyltransferase"
       - metabolites: !!omap
           - MAM01864c: -1
           - MAM02438c: 1
@@ -134077,7 +134069,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR09510"
-      - name: ""
+      - name: "S-adenosyl-L-methionine:5-(N7-methyl 5-triphosphoguanosine)-(purine-ribonucleotide)-[mRNA] 2-O-methyltransferase"
       - metabolites: !!omap
           - MAM02039c: -1
           - MAM02437c: -1
@@ -134095,7 +134087,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR09511"
-      - name: ""
+      - name: "S-Adenosyl-L-methionine:mRNA (2'-O-methyladenosine-N6-)-methyltransferase"
       - metabolites: !!omap
           - MAM02039c: -1
           - MAM02435c: 1
@@ -134113,7 +134105,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR09512"
-      - name: ""
+      - name: "Tetradecanoyl-CoA:glycylpeptide N-tetradecanoyltransferase"
       - metabolites: !!omap
           - MAM01597c: -1
           - MAM02005c: 1
@@ -134130,7 +134122,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR09513"
-      - name: ""
+      - name: "Nomega,Nomega'-dimethyl-L-arginine dimethylamidohydrolase"
       - metabolites: !!omap
           - MAM01588c: 1
           - MAM01707c: 1
@@ -134147,7 +134139,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR09514"
-      - name: ""
+      - name: "N,N,N-trimethylamine,NADPH:oxygen oxidoreductase (N-oxide-forming)"
       - metabolites: !!omap
           - MAM02040c: 1
           - MAM02554c: 1
@@ -134166,7 +134158,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR09516"
-      - name: ""
+      - name: "[Pyruvate dehydrogenase (lipoamide)]-phosphate phosphohydrolase"
       - metabolites: !!omap
           - MAM00219c: 1
           - MAM00220c: -1
@@ -134183,7 +134175,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR09517"
-      - name: ""
+      - name: "ATP:[pyruvate dehydrogenase (lipoamide)] phosphotransferase"
       - metabolites: !!omap
           - MAM00219c: -1
           - MAM00220c: 1
@@ -134201,7 +134193,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR09518"
-      - name: ""
+      - name: "tRNA-guanosine34:queuine tRNA-D-ribosyltransferase"
       - metabolites: !!omap
           - MAM02037c: -1
           - MAM02820c: 1
@@ -134218,7 +134210,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR09519"
-      - name: ""
+      - name: "S-Adenosyl-L-methionine:tRNA guanine N2-methyltransferase"
       - metabolites: !!omap
           - MAM02039c: -1
           - MAM02871c: -1
@@ -134236,7 +134228,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR09520"
-      - name: ""
+      - name: "S-Adenosyl-L-methionine:tRNA guanine N7-methyltransferase"
       - metabolites: !!omap
           - MAM02871c: -1
           - MAM02877c: 1
@@ -134253,7 +134245,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR09521"
-      - name: ""
+      - name: "S-adenosyl-L-methionine:tRNA 5-methylaminomethyl-2-thiouridine methyltransferase"
       - metabolites: !!omap
           - MAM02039c: -1
           - MAM02871c: -1
@@ -134271,7 +134263,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR09522"
-      - name: ""
+      - name: "Aminoacyl-tRNA aminoacylhydrolase"
       - metabolites: !!omap
           - MAM02040c: -1
           - MAM02625c: 1
@@ -134288,7 +134280,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR09523"
-      - name: ""
+      - name: "delta2-isopentenyl-diphosphate:tRNA isopentenyltransferase"
       - metabolites: !!omap
           - MAM01706c: 1
           - MAM02759c: -1
@@ -134305,7 +134297,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR09524"
-      - name: ""
+      - name: "tRNA-uridine uracilmutase"
       - metabolites: !!omap
           - MAM03085c: -1
           - MAM03087c: 1
@@ -134320,7 +134312,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR09528"
-      - name: ""
+      - name: "ATP:beta-adrenergic-receptor phosphotransferase"
       - metabolites: !!omap
           - MAM00187c: -1
           - MAM01285c: 1
@@ -134338,7 +134330,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR09529"
-      - name: ""
+      - name: "N-Acetylmuramoyl-Ala amidohydrolase"
       - metabolites: !!omap
           - MAM01307c: 1
           - MAM02040c: -1
@@ -134355,7 +134347,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR09530"
-      - name: ""
+      - name: "N4-(beta-N-Acetyl-D-glucosaminyl)-L-asparagine amidohydrolase"
       - metabolites: !!omap
           - MAM01370c: 1
           - MAM02039c: 1
@@ -134373,7 +134365,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR09531"
-      - name: ""
+      - name: "N-linked-glycopeptide-(N-acetyl-beta-D-glucosaminyl)-L-asparagine amidohydrolase"
       - metabolites: !!omap
           - MAM01018c: -1
           - MAM02040c: -1
@@ -134390,7 +134382,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR09532"
-      - name: ""
+      - name: "Peptide-L-aspartate,2-oxoglutarate:oxygen oxidoreductase (3-hydroxylating)"
       - metabolites: !!omap
           - MAM01306c: -1
           - MAM01596c: 1
@@ -134409,7 +134401,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR09534"
-      - name: ""
+      - name: "Indole-3-acetamide amidohydrolase"
       - metabolites: !!omap
           - MAM00155c: -1
           - MAM02039c: 1
@@ -134427,7 +134419,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR09537"
-      - name: ""
+      - name: "1-(sn-glycero-3-phospho)-1D-myo-inositol glycerophosphohydrolase"
       - metabolites: !!omap
           - MAM02039c: 1
           - MAM02040c: -1
@@ -134445,7 +134437,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR09539"
-      - name: ""
+      - name: "Vitamin K:oxidized-dithiothreitol oxidoreductase"
       - metabolites: !!omap
           - MAM01713c: 1
           - MAM02040c: -1
@@ -134463,7 +134455,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR09541"
-      - name: ""
+      - name: "L-arginyl-tRNA(Arg):protein arginyltransferase"
       - metabolites: !!omap
           - MAM00196c: 1
           - MAM02039c: -1
@@ -134481,7 +134473,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR09542"
-      - name: ""
+      - name: "[peptide]-glycine,ascorbate:oxygen oxidoreductase (2-hydroxylating)"
       - metabolites: !!omap
           - MAM01368c: 1
           - MAM01655c: -1
@@ -134500,7 +134492,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR09543"
-      - name: ""
+      - name: "L-Glutaminyl-peptide gamma-gluramyltransferase (cyclizing)"
       - metabolites: !!omap
           - MAM01128c: 1
           - MAM02375c: -1
@@ -134516,7 +134508,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR09544"
-      - name: ""
+      - name: "peptide-L-methionine:thioredoxin-disulfide S-oxidoreductase [L-methionine (S)-S-oxide-forming]"
       - metabolites: !!omap
           - MAM02040c: -1
           - MAM02666c: -1
@@ -134534,7 +134526,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR09545"
-      - name: ""
+      - name: "protein-L-lysine:oxygen 6-oxidoreductase (deaminating)"
       - metabolites: !!omap
           - MAM02040c: -1
           - MAM02041c: 1
@@ -134553,7 +134545,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR09546"
-      - name: ""
+      - name: "RNA-3'-phosphate:RNA ligase (cyclizing, AMP-forming)"
       - metabolites: !!omap
           - MAM01334c: -1
           - MAM01371c: 1
@@ -134571,7 +134563,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR09547"
-      - name: ""
+      - name: "UDP-N-acetyl-D-glucosamine:lysosomal-enzyme N-acetylglucosaminephosphotransferase"
       - metabolites: !!omap
           - MAM02427c: -1
           - MAM02428c: 1
@@ -134588,7 +134580,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR09549"
-      - name: ""
+      - name: "S-Adenosyl-L-methionine:2-(3-carboxy-3-aminopropyl)-L-histidine methyltransferase"
       - metabolites: !!omap
           - MAM02039c: -1
           - MAM02699c: 1
@@ -134606,7 +134598,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR09550"
-      - name: ""
+      - name: "[methionine synthase]-methylcob(I)alamin,S-adenosylhomocysteine:NADP+ oxidoreductase"
       - metabolites: !!omap
           - MAM00188c: -2
           - MAM00189c: 2
@@ -134626,7 +134618,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR09551"
-      - name: ""
+      - name: "Formyl-L-methionyl peptide amidohydrolase"
       - metabolites: !!omap
           - MAM01833c: 1
           - MAM01838c: -1
@@ -134644,7 +134636,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR09552"
-      - name: ""
+      - name: "diphospho-myo-inositol-polyphosphate diphosphohydrolase"
       - metabolites: !!omap
           - MAM01710c: -1
           - MAM02039c: 1
@@ -134681,7 +134673,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR09801"
-      - name: ""
+      - name: "GTP:5-hydroxy-L-lysine O-phosphotransferase"
       - metabolites: !!omap
           - MAM01948c: 1
           - MAM02034c: -1
@@ -134698,7 +134690,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR09807"
-      - name: ""
+      - name: "(5R)-5-phosphooxy-L-lysine phosphate-lyase (deaminating"
       - metabolites: !!omap
           - MAM00631c: 1
           - MAM02039c: 1
@@ -134717,7 +134709,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR09555"
-      - name: ""
+      - name: "beta-D-Glucosyl-2-coumarinate glucohydrolase"
       - metabolites: !!omap
           - MAM01578c: 1
           - MAM01581c: -1
@@ -134752,7 +134744,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR09557"
-      - name: ""
+      - name: "N-acetyl-L-glutamate-5-semialdehyde:NADP+ 5-oxidoreductase (phosphrylating)"
       - metabolites: !!omap
           - MAM02039m: -1
           - MAM02535m: 1
@@ -134771,7 +134763,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR09558"
-      - name: ""
+      - name: "2-phosphoglycolate phosphohydrolase"
       - metabolites: !!omap
           - MAM00675c: -1
           - MAM01998c: 1
@@ -134788,7 +134780,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR09559"
-      - name: ""
+      - name: "CTP:choline-phosphate cytidylyltransferase"
       - metabolites: !!omap
           - MAM01594c: 1
           - MAM01623c: -1
@@ -134806,7 +134798,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR09560"
-      - name: ""
+      - name: "CTP:ethanolamine-phosphate cytidylyltransferase"
       - metabolites: !!omap
           - MAM00632c: -1
           - MAM01591c: 1
@@ -134824,7 +134816,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR09563"
-      - name: ""
+      - name: "Aldehyde:NAD+ oxidoreductase"
       - metabolites: !!omap
           - MAM02039c: 2
           - MAM02040c: -1
@@ -134843,7 +134835,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR09564"
-      - name: ""
+      - name: "Aldehyde:NAD+ oxidoreductase"
       - metabolites: !!omap
           - MAM02039m: 2
           - MAM02040m: -1
@@ -134862,7 +134854,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR09565"
-      - name: ""
+      - name: "trans-2-Methyl-5-isopropylhexa-2,5-dienoyl-CoA hydro-lyase"
       - metabolites: !!omap
           - MAM00773m: 1
           - MAM02040m: -1
@@ -134878,7 +134870,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR09566"
-      - name: ""
+      - name: "trans-2-Methyl-5-isopropylhexa-2,5-dienoyl-CoA hydro-lyase"
       - metabolites: !!omap
           - MAM00773x: 1
           - MAM02040x: -1
@@ -134894,7 +134886,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR09567"
-      - name: ""
+      - name: "3-hydroxy-2,6-dimethyl-5-methylene-heptanoyl-CoA hydro-lyase"
       - metabolites: !!omap
           - MAM00773m: 1
           - MAM01579m: -1
@@ -134910,7 +134902,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR09568"
-      - name: ""
+      - name: "3-hydroxy-2,6-dimethyl-5-methylene-heptanoyl-CoA hydro-lyase"
       - metabolites: !!omap
           - MAM00773x: 1
           - MAM01579x: -1
@@ -134926,7 +134918,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR09571"
-      - name: ""
+      - name: "(5-glutamyl)-peptide:amino-acid 5-glutamyltransferase"
       - metabolites: !!omap
           - MAM01926e: -1
           - MAM01974e: 1
@@ -134944,7 +134936,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR09572"
-      - name: ""
+      - name: "gamma-glutamyl-beta-aminopropiononitrile amidohydrolase"
       - metabolites: !!omap
           - MAM01596e: 1
           - MAM01925e: 1
@@ -134999,7 +134991,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR09575"
-      - name: ""
+      - name: "5-methyltetrahydropteroyltri-L-glutamate:L-selenohomocysteine Se-methyltransferase"
       - metabolites: !!omap
           - MAM01114c: -1
           - MAM02890c: -1
@@ -135129,7 +135121,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR09806"
-      - name: ""
+      - name: "glutathione:insulin oxidoreductase"
       - metabolites: !!omap
           - MAM02026c: -2
           - MAM02027c: 1
@@ -135146,7 +135138,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR00010"
-      - name: ""
+      - name: "1-acylglycerol acylhydrolase"
       - metabolites: !!omap
           - MAM00510c: -1
           - MAM01820c: 1
@@ -137372,7 +137364,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR00007"
-      - name: ""
+      - name: "triacylglycerol acylhydrolase"
       - metabolites: !!omap
           - MAM00241e: 1
           - MAM01820e: 1
@@ -137389,7 +137381,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR00008"
-      - name: ""
+      - name: "1,2-diacyl-sn-glycerol acylhydrolase"
       - metabolites: !!omap
           - MAM00241e: -1
           - MAM00510e: 1
@@ -139099,7 +139091,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR01919"
-      - name: ""
+      - name: "3'-phosphoadenylyl-sulfate:cholesterol sulfotransferase"
       - metabolites: !!omap
           - MAM01450c: -1
           - MAM01512c: 1
@@ -139181,7 +139173,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR03964"
-      - name: ""
+      - name: "ATP phosphohydrolase"
       - metabolites: !!omap
           - MAM01285c: 1
           - MAM01371c: -1
@@ -139551,23 +139543,6 @@
       - subsystem:
           - "Transport reactions"
       - confidence_score: 0
-    - !!omap
-      - id: "MAR04911"
-      - name: ""
-      - metabolites: !!omap
-          - MAM02519c: 3
-          - MAM02519e: -3
-          - MAM02751c: 2
-          - MAM02751e: -2
-      - lower_bound: 0
-      - upper_bound: 1000
-      - gene_reaction_rule: "NaPi-III"
-      - rxnNotes: ""
-      - eccodes: ""
-      - references: ""
-      - subsystem:
-          - "Transport reactions"
-      - confidence_score: 0
     - !!omap
       - id: "MAR04912"
       - name: ""
@@ -151481,12 +151456,12 @@
           - MAM02039e: -1
           - MAM02403c: 1
           - MAM02403e: -1
-      - lower_bound: 0
+      - lower_bound: -1000
       - upper_bound: 1000
       - gene_reaction_rule: "CG13907 or chk or hrm"
       - rxnNotes: ""
       - eccodes: ""
-      - references: "PMID:12739169;PMID:18305372"
+      - references: "PMID:12739169;PMID:18305372;PMID:11101640;PMID:23935841;PMID:31719150"
       - subsystem:
           - "Transport reactions"
       - confidence_score: 0
@@ -163621,7 +163596,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR02141"
-      - name: ""
+      - name: "calcitriol,adrenodoxin:oxygen oxidoreductase (24-hydroxylating)"
       - metabolites: !!omap
           - MAM01416m: 1
           - MAM01417m: -1
@@ -163880,7 +163855,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04184"
-      - name: ""
+      - name: "sulfite:ferricytochrome-c oxidoreductase"
       - metabolites: !!omap
           - MAM01824m: -2
           - MAM01826m: 2
@@ -164455,10 +164430,10 @@
           - MAM02819m: 1
       - lower_bound: 0
       - upper_bound: 1000
-      - gene_reaction_rule: "CG9396 or CG9399 or Mpc1"
+      - gene_reaction_rule: "((CG9396 or CG9399) and Mpc1)"
       - rxnNotes: ""
       - eccodes: ""
-      - references: "PMID:12739169;PMID:18305372"
+      - references: "PMID:22628558;PMID:27317664"
       - subsystem:
           - "Transport reactions"
       - confidence_score: 0
@@ -166015,23 +165990,6 @@
       - subsystem:
           - "Transport reactions"
       - confidence_score: 0
-    - !!omap
-      - id: "MAR06324"
-      - name: ""
-      - metabolites: !!omap
-          - MAM01365c: 1
-          - MAM01365m: -1
-          - MAM02039c: -1
-          - MAM02039m: 1
-      - lower_bound: 0
-      - upper_bound: 1000
-      - gene_reaction_rule: "CG1628"
-      - rxnNotes: ""
-      - eccodes: ""
-      - references: "PMID:14598172;PMID:8132483"
-      - subsystem:
-          - "Transport reactions"
-      - confidence_score: 0
     - !!omap
       - id: "MAR06325"
       - name: ""
@@ -166085,7 +166043,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR06328"
-      - name: ""
+      - name: "ATP:ADP phosphatransferase"
       - metabolites: !!omap
           - MAM01285c: -1
           - MAM01285m: 1
@@ -169019,7 +168977,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04908"
-      - name: ""
+      - name: "ATP:ADP phosphatransferase"
       - metabolites: !!omap
           - MAM01285c: -1
           - MAM01285x: 1
@@ -170418,21 +170376,6 @@
       - subsystem:
           - "Transport reactions"
       - confidence_score: 0
-    - !!omap
-      - id: "MAR08639"
-      - name: ""
-      - metabolites: !!omap
-          - MAM01721c: -1
-          - MAM01721n: 1
-      - lower_bound: -1000
-      - upper_bound: 1000
-      - gene_reaction_rule: "(Nup93-1 or Nup93-2) and Aladin and CG18787 and Dbp80 and Elys and Gle1 and Gp210 and Mtor and Ndc1 and Nup107 and Nup133 and Nup153 and Nup154 and Nup160 and Nup188 and Nup205 and Nup214 and Nup35 and Nup358 and Nup37 and Nup43 and Nup44A and Nup50 and Nup54 and Nup58 and Nup62 and Nup75 and Nup98-96 and Rae1 and Sec13 and mbo"
-      - rxnNotes: ""
-      - eccodes: ""
-      - references: ""
-      - subsystem:
-          - "Transport reactions"
-      - confidence_score: 2
     - !!omap
       - id: "MAR08789"
       - name: ""
@@ -171035,7 +170978,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04907"
-      - name: ""
+      - name: "ATP:ADP phosphatransferase"
       - metabolites: !!omap
           - MAM01285c: 1
           - MAM01285l: -1
@@ -175894,7 +175837,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04856"
-      - name: ""
+      - name: "alpha-D-Glucose 6-phosphate ketol-isomerase"
       - metabolites: !!omap
           - MAM01968c: -1
           - MAM01968r: 1
@@ -176050,7 +175993,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR04906"
-      - name: ""
+      - name: "ATP:ADP phosphatransferase"
       - metabolites: !!omap
           - MAM01285c: 1
           - MAM01285r: -1
@@ -185236,7 +185179,7 @@
       - gene_reaction_rule: "CG1628"
       - rxnNotes: ""
       - eccodes: "4.3.2.1"
-      - references: "PMID:14598172"
+      - references: "PMID:14598172;PMID:8132483"
       - subsystem:
           - "Transport reactions"
       - confidence_score: 0
@@ -185567,7 +185510,7 @@
       - gene_reaction_rule: "LBR"
       - rxnNotes: ""
       - eccodes: "1.3.1.70"
-      - references: "PMID:16784888"
+      - references: "PMID:11969204;PMID:16784888;PMID:7946524"
       - subsystem:
           - "Cholesterol metabolism"
       - confidence_score: 0
@@ -185811,7 +185754,7 @@
       - gene_reaction_rule: "Cds"
       - rxnNotes: ""
       - eccodes: "2.7.7.41"
-      - references: ""
+      - references: "PMID:1330695;PMID:9370329"
       - subsystem:
           - "Glycerophospholipid metabolism"
       - confidence_score: 0
@@ -192999,24 +192942,6 @@
       - subsystem:
           - "Miscellaneous"
       - confidence_score: 0
-    - !!omap
-      - id: "MAR02199"
-      - name: "4, 4-Dimethyl-5A-Cholesta-8, 24-Dien-3B-Ol:NADP+ D14-Oxidoreductase"
-      - metabolites: !!omap
-          - MAM00367r: -1
-          - MAM00941r: 1
-          - MAM02039r: 1
-          - MAM02554r: -1
-          - MAM02555r: 1
-      - lower_bound: -1000
-      - upper_bound: 1000
-      - gene_reaction_rule: "LBR"
-      - rxnNotes: ""
-      - eccodes: "1.3.1.70"
-      - references: "PMID:11969204;PMID:7946524"
-      - subsystem:
-          - "Cholesterol metabolism"
-      - confidence_score: 0
     - !!omap
       - id: "MAR02207"
       - name: "Trans-Hex-2-Enoyl Coenzyme A Reductase"
@@ -201643,21 +201568,6 @@
       - subsystem:
           - "Fatty acid oxidation"
       - confidence_score: 0
-    - !!omap
-      - id: "MAR04455"
-      - name: "Transport of 3-Hydroxy Butyryl Carnitine into Extra Cellular Space"
-      - metabolites: !!omap
-          - MAM03201c: -1
-          - MAM03201e: 1
-      - lower_bound: 0
-      - upper_bound: 1000
-      - gene_reaction_rule: ""
-      - rxnNotes: ""
-      - eccodes: ""
-      - references: "PMID:20157782;PMID:17347912;PMID:11489939"
-      - subsystem:
-          - "Fatty acid oxidation"
-      - confidence_score: 0
     - !!omap
       - id: "MAR04457"
       - name: "Production of Decanoylcarnitine"
@@ -201692,21 +201602,6 @@
       - subsystem:
           - "Fatty acid oxidation"
       - confidence_score: 0
-    - !!omap
-      - id: "MAR04463"
-      - name: "Transport of Decenoyl Carnitine into Extra Cellular Space"
-      - metabolites: !!omap
-          - MAM03487c: -1
-          - MAM03487e: 1
-      - lower_bound: 0
-      - upper_bound: 1000
-      - gene_reaction_rule: ""
-      - rxnNotes: ""
-      - eccodes: ""
-      - references: "PMID:19720082"
-      - subsystem:
-          - "Fatty acid oxidation"
-      - confidence_score: 0
     - !!omap
       - id: "MAR04475"
       - name: "Production of Decadienoylcarnitine"
@@ -201724,21 +201619,6 @@
       - subsystem:
           - "Fatty acid oxidation"
       - confidence_score: 0
-    - !!omap
-      - id: "MAR04478"
-      - name: "Transport of Decanoyl Carnitine into Extra Cellular Space"
-      - metabolites: !!omap
-          - MAM03488c: -1
-          - MAM03488e: 1
-      - lower_bound: 0
-      - upper_bound: 1000
-      - gene_reaction_rule: ""
-      - rxnNotes: ""
-      - eccodes: ""
-      - references: "PMID:19720082"
-      - subsystem:
-          - "Fatty acid oxidation"
-      - confidence_score: 0
     - !!omap
       - id: "MAR04479"
       - name: "Transport of Sebacoyl Carnitine into Cytosol"
@@ -201771,21 +201651,6 @@
       - subsystem:
           - "Fatty acid oxidation"
       - confidence_score: 0
-    - !!omap
-      - id: "MAR04502"
-      - name: "Transport of Sebacoyl Carnitine into Extra Cellular Space"
-      - metabolites: !!omap
-          - MAM03489c: -1
-          - MAM03489e: 1
-      - lower_bound: 0
-      - upper_bound: 1000
-      - gene_reaction_rule: ""
-      - rxnNotes: ""
-      - eccodes: ""
-      - references: "PMID:6959231;PMID:3119938"
-      - subsystem:
-          - "Fatty acid oxidation"
-      - confidence_score: 0
     - !!omap
       - id: "MAR04504"
       - name: "Production of 3-Ohdecanoylcarnitinec"
@@ -201871,21 +201736,6 @@
       - subsystem:
           - "Fatty acid oxidation"
       - confidence_score: 0
-    - !!omap
-      - id: "MAR04517"
-      - name: "Excretion of Dodecanedioyl Carnitine"
-      - metabolites: !!omap
-          - MAM03490c: -1
-          - MAM03490e: 1
-      - lower_bound: 0
-      - upper_bound: 1000
-      - gene_reaction_rule: ""
-      - rxnNotes: ""
-      - eccodes: ""
-      - references: "PMID:16146704"
-      - subsystem:
-          - "Fatty acid oxidation"
-      - confidence_score: 0
     - !!omap
       - id: "MAR04522"
       - name: "Production of 3-Ohdodecanoylcarnitinec"
@@ -201969,21 +201819,6 @@
       - subsystem:
           - "Fatty acid oxidation"
       - confidence_score: 0
-    - !!omap
-      - id: "MAR04576"
-      - name: "Excretion of 3-Hydroxy Tetradecenoyl-7-Carnitine"
-      - metabolites: !!omap
-          - MAM03264c: -1
-          - MAM03264e: 1
-      - lower_bound: 0
-      - upper_bound: 1000
-      - gene_reaction_rule: ""
-      - rxnNotes: ""
-      - eccodes: ""
-      - references: "PMID:21281499"
-      - subsystem:
-          - "Fatty acid oxidation"
-      - confidence_score: 0
     - !!omap
       - id: "MAR04578"
       - name: "Transport of 3-Hydroxytetradeca Dienoyl Coenzyme A from Mitochondria into Cytosol"
@@ -202033,21 +201868,6 @@
       - subsystem:
           - "Fatty acid oxidation"
       - confidence_score: 0
-    - !!omap
-      - id: "MAR04609"
-      - name: "Excretion of 3-Hydroxy Trans5,8Tetradecadienoyl Carnitine"
-      - metabolites: !!omap
-          - MAM03268c: -1
-          - MAM03268e: 1
-      - lower_bound: 0
-      - upper_bound: 1000
-      - gene_reaction_rule: ""
-      - rxnNotes: ""
-      - eccodes: ""
-      - references: "PMID:21281499"
-      - subsystem:
-          - "Fatty acid oxidation"
-      - confidence_score: 0
     - !!omap
       - id: "MAR04610"
       - name: "Production of 3-Hydroxytetradecanoylcarnitine"
@@ -202114,21 +201934,6 @@
       - subsystem:
           - "Fatty acid oxidation"
       - confidence_score: 0
-    - !!omap
-      - id: "MAR04622"
-      - name: "Excretion of 3-Hydroxy Trans7,10-Hexadecadienoyl Carnitine"
-      - metabolites: !!omap
-          - MAM03266c: -1
-          - MAM03266e: 1
-      - lower_bound: 0
-      - upper_bound: 1000
-      - gene_reaction_rule: ""
-      - rxnNotes: ""
-      - eccodes: ""
-      - references: "PMID:21281499"
-      - subsystem:
-          - "Fatty acid oxidation"
-      - confidence_score: 0
     - !!omap
       - id: "MAR04624"
       - name: "Production of Hexadecanedioylcarnitine"
@@ -202146,21 +201951,6 @@
       - subsystem:
           - "Fatty acid oxidation"
       - confidence_score: 0
-    - !!omap
-      - id: "MAR04626"
-      - name: "Transport of Hexadecanedioic Acid Mono-L-Carnitine Ester into Extra Cellular Space"
-      - metabolites: !!omap
-          - MAM03493c: -1
-          - MAM03493e: 1
-      - lower_bound: 0
-      - upper_bound: 1000
-      - gene_reaction_rule: ""
-      - rxnNotes: ""
-      - eccodes: ""
-      - references: "PMID:2064600"
-      - subsystem:
-          - "Fatty acid oxidation"
-      - confidence_score: 0
     - !!omap
       - id: "MAR04634"
       - name: "Production of 3-Hydroxyhexadecanoylcarnitinec"
@@ -202244,36 +202034,6 @@
       - subsystem:
           - "Transport reactions"
       - confidence_score: 0
-    - !!omap
-      - id: "MAR04653"
-      - name: "Transport of Malonyl Carnitine into Extra Cellular Space"
-      - metabolites: !!omap
-          - MAM03494c: -1
-          - MAM03494e: 1
-      - lower_bound: 0
-      - upper_bound: 1000
-      - gene_reaction_rule: ""
-      - rxnNotes: ""
-      - eccodes: ""
-      - references: "PMID:19720082"
-      - subsystem:
-          - "Fatty acid oxidation"
-      - confidence_score: 0
-    - !!omap
-      - id: "MAR04659"
-      - name: "Transport of Butyryl Carnitine into the Extra Cellular Space"
-      - metabolites: !!omap
-          - MAM02635c: -1
-          - MAM02635e: 1
-      - lower_bound: 0
-      - upper_bound: 1000
-      - gene_reaction_rule: ""
-      - rxnNotes: ""
-      - eccodes: "1.1.1.62"
-      - references: "PMID:19720082"
-      - subsystem:
-          - "Fatty acid oxidation"
-      - confidence_score: 0
     - !!omap
       - id: "MAR04661"
       - name: "Transport of Succinyl Carnitine into Cytosol"
@@ -202289,21 +202049,6 @@
       - subsystem:
           - "Fatty acid oxidation"
       - confidence_score: 0
-    - !!omap
-      - id: "MAR04669"
-      - name: "Transport of Succinyl Carnitine into the Extra Cellular Space"
-      - metabolites: !!omap
-          - MAM03495c: -1
-          - MAM03495e: 1
-      - lower_bound: 0
-      - upper_bound: 1000
-      - gene_reaction_rule: ""
-      - rxnNotes: ""
-      - eccodes: ""
-      - references: "PMID:9266369"
-      - subsystem:
-          - "Fatty acid oxidation"
-      - confidence_score: 0
     - !!omap
       - id: "MAR04671"
       - name: "Production of 3-Hydroxybytyryl Carnitinec"
@@ -202402,21 +202147,6 @@
       - subsystem:
           - "Fatty acid oxidation"
       - confidence_score: 0
-    - !!omap
-      - id: "MAR04713"
-      - name: "Transport of Glutaryl Carnitine into the Extra Cellular Fluid"
-      - metabolites: !!omap
-          - MAM03497c: -1
-          - MAM03497e: 1
-      - lower_bound: 0
-      - upper_bound: 1000
-      - gene_reaction_rule: ""
-      - rxnNotes: ""
-      - eccodes: ""
-      - references: "PMID:19720082"
-      - subsystem:
-          - "Fatty acid oxidation"
-      - confidence_score: 0
     - !!omap
       - id: "MAR04719"
       - name: "Production of Hexanoylcarnitine"
@@ -202451,21 +202181,6 @@
       - subsystem:
           - "Transport reactions"
       - confidence_score: 0
-    - !!omap
-      - id: "MAR04724"
-      - name: "Transport of Hexanoyl Carnitine into the Extra Cellular Fluid"
-      - metabolites: !!omap
-          - MAM03498c: -1
-          - MAM03498e: 1
-      - lower_bound: 0
-      - upper_bound: 1000
-      - gene_reaction_rule: ""
-      - rxnNotes: ""
-      - eccodes: ""
-      - references: "PMID:19720082"
-      - subsystem:
-          - "Fatty acid oxidation"
-      - confidence_score: 0
     - !!omap
       - id: "MAR04726"
       - name: "Transport of Hexanoylcarnitine into Cytosol"
@@ -202513,21 +202228,6 @@
       - subsystem:
           - "Fatty acid oxidation"
       - confidence_score: 0
-    - !!omap
-      - id: "MAR04747"
-      - name: "Transport of Adipoyl Carnitine into the Extra Cellular Fluid"
-      - metabolites: !!omap
-          - MAM03499c: -1
-          - MAM03499e: 1
-      - lower_bound: 0
-      - upper_bound: 1000
-      - gene_reaction_rule: ""
-      - rxnNotes: ""
-      - eccodes: ""
-      - references: "PMID:19720082"
-      - subsystem:
-          - "Fatty acid oxidation"
-      - confidence_score: 0
     - !!omap
       - id: "MAR04749"
       - name: "Production of Ocetenoylcarnitine"
@@ -202545,36 +202245,6 @@
       - subsystem:
           - "Fatty acid oxidation"
       - confidence_score: 0
-    - !!omap
-      - id: "MAR04751"
-      - name: "Transport of Octenoyl Carnitine into the Extra Cellular Space"
-      - metabolites: !!omap
-          - MAM03501c: -1
-          - MAM03501e: 1
-      - lower_bound: 0
-      - upper_bound: 1000
-      - gene_reaction_rule: ""
-      - rxnNotes: ""
-      - eccodes: ""
-      - references: "PMID:12828998"
-      - subsystem:
-          - "Fatty acid oxidation"
-      - confidence_score: 0
-    - !!omap
-      - id: "MAR04753"
-      - name: "Transport of Octanoyl Carnitine into the Extra Cellular Space"
-      - metabolites: !!omap
-          - MAM02409c: -1
-          - MAM02409e: 1
-      - lower_bound: 0
-      - upper_bound: 1000
-      - gene_reaction_rule: ""
-      - rxnNotes: ""
-      - eccodes: ""
-      - references: "PMID:19720082"
-      - subsystem:
-          - "Fatty acid oxidation"
-      - confidence_score: 0
     - !!omap
       - id: "MAR04759"
       - name: "Production of Suberylcarnitine"
@@ -202592,21 +202262,6 @@
       - subsystem:
           - "Fatty acid oxidation"
       - confidence_score: 0
-    - !!omap
-      - id: "MAR04761"
-      - name: "Transport of Suberyl Carnitine into the Extra Cellular Space"
-      - metabolites: !!omap
-          - MAM03502c: -1
-          - MAM03502e: 1
-      - lower_bound: 0
-      - upper_bound: 1000
-      - gene_reaction_rule: ""
-      - rxnNotes: ""
-      - eccodes: ""
-      - references: "PMID:6959231"
-      - subsystem:
-          - "Fatty acid oxidation"
-      - confidence_score: 0
     - !!omap
       - id: "MAR04782"
       - name: "Transport of Dimethylnonanoylcarnitine from Peroxisomes to Cytosol"
@@ -202657,81 +202312,6 @@
       - subsystem:
           - "Transport reactions"
       - confidence_score: 0
-    - !!omap
-      - id: "MAR04794"
-      - name: "Transport of 3-Hydroxydodecanoyl Carnitine into Extra Cellular Space"
-      - metabolites: !!omap
-          - MAM03202c: -1
-          - MAM03202e: 1
-      - lower_bound: 0
-      - upper_bound: 1000
-      - gene_reaction_rule: ""
-      - rxnNotes: ""
-      - eccodes: ""
-      - references: "PMID:15535801"
-      - subsystem:
-          - "Fatty acid oxidation"
-      - confidence_score: 0
-    - !!omap
-      - id: "MAR04795"
-      - name: "Transport of Lauroyl Carnitine into Extra Cellular Space"
-      - metabolites: !!omap
-          - MAM03540c: -1
-          - MAM03540e: 1
-      - lower_bound: 0
-      - upper_bound: 1000
-      - gene_reaction_rule: ""
-      - rxnNotes: ""
-      - eccodes: ""
-      - references: "PMID:21463612;PMID:12828998;PMID:9498103;PMID:20026021"
-      - subsystem:
-          - "Fatty acid oxidation"
-      - confidence_score: 0
-    - !!omap
-      - id: "MAR04798"
-      - name: "Transport of Dodecenoyl Carnitine into Extra Cellular Space"
-      - metabolites: !!omap
-          - MAM03541c: -1
-          - MAM03541e: 1
-      - lower_bound: 0
-      - upper_bound: 1000
-      - gene_reaction_rule: ""
-      - rxnNotes: ""
-      - eccodes: ""
-      - references: "PMID:20026021"
-      - subsystem:
-          - "Fatty acid oxidation"
-      - confidence_score: 0
-    - !!omap
-      - id: "MAR04800"
-      - name: "Transport of 3-Hydroxydecanoyl Carnitine into Extra Cellular Space"
-      - metabolites: !!omap
-          - MAM03204c: -1
-          - MAM03204e: 1
-      - lower_bound: 0
-      - upper_bound: 1000
-      - gene_reaction_rule: ""
-      - rxnNotes: ""
-      - eccodes: ""
-      - references: "PMID:19720082"
-      - subsystem:
-          - "Fatty acid oxidation"
-      - confidence_score: 0
-    - !!omap
-      - id: "MAR04801"
-      - name: "Transport of Decadienoyl Carnitine into the Extra Cellular Space"
-      - metabolites: !!omap
-          - MAM03544c: -1
-          - MAM03544e: 1
-      - lower_bound: 0
-      - upper_bound: 1000
-      - gene_reaction_rule: ""
-      - rxnNotes: ""
-      - eccodes: ""
-      - references: "PMID:21215187"
-      - subsystem:
-          - "Fatty acid oxidation"
-      - confidence_score: 0
     - !!omap
       - id: "MAR04803"
       - name: "Transport of 13-Docosenoylcoa into Peroxisomes"
@@ -206266,36 +205846,6 @@
       - subsystem:
           - "Fatty acid oxidation"
       - confidence_score: 0
-    - !!omap
-      - id: "MAR06494"
-      - name: "Transport of 3-Hydroxyhexadecenoyl Carnitine into Extra Cellular Space"
-      - metabolites: !!omap
-          - MAM03217c: -1
-          - MAM03217e: 1
-      - lower_bound: 0
-      - upper_bound: 1000
-      - gene_reaction_rule: ""
-      - rxnNotes: ""
-      - eccodes: ""
-      - references: "PMID:19720082"
-      - subsystem:
-          - "Fatty acid oxidation"
-      - confidence_score: 0
-    - !!omap
-      - id: "MAR06497"
-      - name: "Transport of 3-Hydroxyhexadecanoyl Carnitine into Extra Cellular Space"
-      - metabolites: !!omap
-          - MAM03219c: -1
-          - MAM03219e: 1
-      - lower_bound: 0
-      - upper_bound: 1000
-      - gene_reaction_rule: ""
-      - rxnNotes: ""
-      - eccodes: ""
-      - references: "PMID:19720082"
-      - subsystem:
-          - "Fatty acid oxidation"
-      - confidence_score: 0
     - !!omap
       - id: "MAR06498"
       - name: "Transport of Hexadecanedioc Acid by Diffusion"
@@ -206356,21 +205906,6 @@
       - subsystem:
           - "Fatty acid oxidation"
       - confidence_score: 0
-    - !!omap
-      - id: "MAR06504"
-      - name: "Transport of 3-Hydroxy-Isovaleryl Carnitine into Extra Cellular Space"
-      - metabolites: !!omap
-          - MAM03243c: -1
-          - MAM03243e: 1
-      - lower_bound: 0
-      - upper_bound: 1000
-      - gene_reaction_rule: ""
-      - rxnNotes: ""
-      - eccodes: ""
-      - references: "PMID:19720082"
-      - subsystem:
-          - "Fatty acid oxidation"
-      - confidence_score: 0
     - !!omap
       - id: "MAR06528"
       - name: "Transport of (S)-3-Hydroxyoctadecanoyl Coenzyme A from Mitochondria into the Cytosol"
@@ -206401,36 +205936,6 @@
       - subsystem:
           - "Fatty acid oxidation"
       - confidence_score: 0
-    - !!omap
-      - id: "MAR06541"
-      - name: "Transport of 3-Hydroxyoctadecadienoyl Carnitine into Extra Cellular Space"
-      - metabolites: !!omap
-          - MAM03250c: -1
-          - MAM03250e: 1
-      - lower_bound: 0
-      - upper_bound: 1000
-      - gene_reaction_rule: ""
-      - rxnNotes: "DOI:10.1007/s00706-005-0332-9;http://www.childrensmn.org/Manuals/Lab/Chemistry/051465.pdf"
-      - eccodes: ""
-      - references: ""
-      - subsystem:
-          - "Fatty acid oxidation"
-      - confidence_score: 0
-    - !!omap
-      - id: "MAR06582"
-      - name: "Transport of 3-Hydroxyoctadecanoyl Carnitine into Extra Cellular Space"
-      - metabolites: !!omap
-          - MAM03251c: -1
-          - MAM03251e: 1
-      - lower_bound: 0
-      - upper_bound: 1000
-      - gene_reaction_rule: ""
-      - rxnNotes: ""
-      - eccodes: ""
-      - references: "PMID:19720082"
-      - subsystem:
-          - "Fatty acid oxidation"
-      - confidence_score: 0
     - !!omap
       - id: "MAR06586"
       - name: "Transport of (S)-3-Hydroxytetradecanoyl Coenzyme A from Mitochondria into the Cytosol"
@@ -206446,21 +205951,6 @@
       - subsystem:
           - "Fatty acid oxidation"
       - confidence_score: 0
-    - !!omap
-      - id: "MAR06590"
-      - name: "Transport of 3-Hydroxy-Tetradecanoyl Carnitine into Extra Cellular Space"
-      - metabolites: !!omap
-          - MAM03262c: -1
-          - MAM03262e: 1
-      - lower_bound: 0
-      - upper_bound: 1000
-      - gene_reaction_rule: ""
-      - rxnNotes: ""
-      - eccodes: ""
-      - references: "PMID:20583174"
-      - subsystem:
-          - "Fatty acid oxidation"
-      - confidence_score: 0
     - !!omap
       - id: "MAR06593"
       - name: "Transport of Isovaleryl Coenzyme A from Mitochondria into Cytosol"
@@ -206476,21 +205966,6 @@
       - subsystem:
           - "Fatty acid oxidation"
       - confidence_score: 0
-    - !!omap
-      - id: "MAR06594"
-      - name: "Transport of Isovaleryl Carnitine into the Extra Cellular Space"
-      - metabolites: !!omap
-          - MAM03706c: -1
-          - MAM03706e: 1
-      - lower_bound: 0
-      - upper_bound: 1000
-      - gene_reaction_rule: ""
-      - rxnNotes: ""
-      - eccodes: ""
-      - references: "PMID:19720082"
-      - subsystem:
-          - "Fatty acid oxidation"
-      - confidence_score: 0
     - !!omap
       - id: "MAR06596"
       - name: "Transport of Lignocericyl Coenzyme A from Cytosol to Peroxisome."
@@ -206663,21 +206138,6 @@
       - subsystem:
           - "Fatty acid oxidation"
       - confidence_score: 0
-    - !!omap
-      - id: "MAR06706"
-      - name: "Transport of 3-Hydroxy-Octadecenoyl Carnitine into Extra Cellular Space"
-      - metabolites: !!omap
-          - MAM03253c: -1
-          - MAM03253e: 1
-      - lower_bound: 0
-      - upper_bound: 1000
-      - gene_reaction_rule: ""
-      - rxnNotes: ""
-      - eccodes: ""
-      - references: "PMID:19720082"
-      - subsystem:
-          - "Fatty acid oxidation"
-      - confidence_score: 0
     - !!omap
       - id: "MAR06724"
       - name: "Transport of W-Hydroxydecanoic Acid by Diffusion"
@@ -206956,66 +206416,6 @@
       - subsystem:
           - "Fatty acid oxidation"
       - confidence_score: 0
-    - !!omap
-      - id: "MAR06853"
-      - name: "Transport of Myristoyl Carnitine into Extra Cellular Space"
-      - metabolites: !!omap
-          - MAM02974c: -1
-          - MAM02974e: 1
-      - lower_bound: 0
-      - upper_bound: 1000
-      - gene_reaction_rule: ""
-      - rxnNotes: ""
-      - eccodes: ""
-      - references: "PMID:19720082"
-      - subsystem:
-          - "Fatty acid oxidation"
-      - confidence_score: 0
-    - !!omap
-      - id: "MAR06856"
-      - name: "Transport of Tetradecadienoyl Carnitine into Extra Cellular Space"
-      - metabolites: !!omap
-          - MAM03975c: -1
-          - MAM03975e: 1
-      - lower_bound: 0
-      - upper_bound: 1000
-      - gene_reaction_rule: ""
-      - rxnNotes: ""
-      - eccodes: ""
-      - references: "PMID:19720082"
-      - subsystem:
-          - "Fatty acid oxidation"
-      - confidence_score: 0
-    - !!omap
-      - id: "MAR06857"
-      - name: "Transport of Tetradecenoyl Carnitine into Extra Cellular Space"
-      - metabolites: !!omap
-          - MAM03980c: -1
-          - MAM03980e: 1
-      - lower_bound: 0
-      - upper_bound: 1000
-      - gene_reaction_rule: ""
-      - rxnNotes: ""
-      - eccodes: ""
-      - references: "PMID:19720082"
-      - subsystem:
-          - "Fatty acid oxidation"
-      - confidence_score: 0
-    - !!omap
-      - id: "MAR06858"
-      - name: "Transport of Tiglyl Carnitine into the Extra Cellular Fluid"
-      - metabolites: !!omap
-          - MAM03496c: -1
-          - MAM03496e: 1
-      - lower_bound: 0
-      - upper_bound: 1000
-      - gene_reaction_rule: ""
-      - rxnNotes: ""
-      - eccodes: ""
-      - references: "PMID:20157782"
-      - subsystem:
-          - "Fatty acid oxidation"
-      - confidence_score: 0
     - !!omap
       - id: "MAR06859"
       - name: "Transport of 3, 4-Dihydroxy-L-Phenylalanine by Lat1 in Association with 4F2Hc, Across the Apical Surface of the Membranes"
@@ -207782,21 +207182,6 @@
       - subsystem:
           - "Transport reactions"
       - confidence_score: 0
-    - !!omap
-      - id: "MAR07191"
-      - name: "Release of Pantothenate"
-      - metabolites: !!omap
-          - MAM02680c: -1
-          - MAM02680e: 1
-      - lower_bound: 0
-      - upper_bound: 1000
-      - gene_reaction_rule: ""
-      - rxnNotes: ""
-      - eccodes: ""
-      - references: "PMID:21749321"
-      - subsystem:
-          - "Transport reactions"
-      - confidence_score: 0
     - !!omap
       - id: "MAR07192"
       - name: "Transport of Prolylglycine by the Apical Pept1 Amino Acid Transporters"
@@ -207898,21 +207283,6 @@
       - subsystem:
           - "Dietary fiber binding"
       - confidence_score: 0
-    - !!omap
-      - id: "MAR07441"
-      - name: "Export of Triglyceride"
-      - metabolites: !!omap
-          - MAM02959c: -1
-          - MAM02959e: 1
-      - lower_bound: 0
-      - upper_bound: 1000
-      - gene_reaction_rule: ""
-      - rxnNotes: "https://books.google.se/books/about/Advanced_Nutrition_and_Human_Metabolism.html?id=6CBrPX8oIX8C Sareen S. Gropper, jack L. Smith, James L. Groff (2009) Wadaworth cengage learning, Advanced nutrition and human metabolism, 5th edition, page 142-148."
-      - eccodes: ""
-      - references: ""
-      - subsystem:
-          - "Transport reactions"
-      - confidence_score: 0
     - !!omap
       - id: "MAR07589"
       - name: "Transport of Taurine by Pat1"
@@ -208022,21 +207392,6 @@
       - subsystem:
           - "Transport reactions"
       - confidence_score: 0
-    - !!omap
-      - id: "MAR07742"
-      - name: "Transport of Cholesterol Ester"
-      - metabolites: !!omap
-          - MAM01451c: -1
-          - MAM01451e: 1
-      - lower_bound: 0
-      - upper_bound: 1000
-      - gene_reaction_rule: ""
-      - rxnNotes: "https://books.google.se/books/about/Advanced_Nutrition_and_Human_Metabolism.html?id=6CBrPX8oIX8C Sareen S. Gropper, jack L. Smith, James L. Groff (2009) Wadaworth cengage learning, Advanced nutrition and human metabolism, 5th edition, page 142-148"
-      - eccodes: ""
-      - references: ""
-      - subsystem:
-          - "Transport reactions"
-      - confidence_score: 0
     - !!omap
       - id: "MAR07750"
       - name: "Tanslocation of 1-Alpha, 25-Dihydroxyvitamin D3 to Nucleus"
@@ -208890,17 +208245,17 @@
       - id: "MAR08971"
       - name: "Glucose 6-Phosphate Dehydrogenase"
       - metabolites: !!omap
-          - MAM01961c: 3
-          - MAM01968c: -3
-          - MAM02039c: 3
-          - MAM02554c: -3
-          - MAM02555c: 3
+          - MAM01961c: 1
+          - MAM01968c: -1
+          - MAM02039c: 1
+          - MAM02554c: -1
+          - MAM02555c: 1
       - lower_bound: 0
       - upper_bound: 1000
       - gene_reaction_rule: "Zw"
       - rxnNotes: "Harpers illustrated Biochemistry (2009) 28th edition pages 174-183, ISBN:9781282335806"
-      - eccodes: ""
-      - references: "PMID:4382012;PMID:13575411"
+      - eccodes: "1.1.1.49"
+      - references: "PMID:13575411;PMID:15774558;PMID:16756494;PMID:2753047;PMID:4169027;PMID:4382012"
       - subsystem:
           - "Pentose phosphate pathway"
       - confidence_score: 0
@@ -208923,24 +208278,6 @@
       - subsystem:
           - "Transport reactions"
       - confidence_score: 0
-    - !!omap
-      - id: "MAR08973"
-      - name: "Phosphogluconate Dehydrogenase"
-      - metabolites: !!omap
-          - MAM01169c: -3
-          - MAM01596c: 3
-          - MAM02554c: -3
-          - MAM02555c: 3
-          - MAM02846c: 3
-      - lower_bound: 0
-      - upper_bound: 1000
-      - gene_reaction_rule: "Pgd"
-      - rxnNotes: "Harpers illustrated Biochemistry (2009) 28th edition pages 174-183, ISBN:9781282335806"
-      - eccodes: "1.1.1.44"
-      - references: "PMID:4382012;PMID:13575411"
-      - subsystem:
-          - "Pentose phosphate pathway"
-      - confidence_score: 0
     - !!omap
       - id: "MAR08974"
       - name: "Hypotaurine Oxidase, Extracellular"
@@ -209698,7 +209035,7 @@
       - gene_reaction_rule: ""
       - rxnNotes: ""
       - eccodes: ""
-      - references: ""
+      - references: "PMID:21749321"
       - subsystem:
           - "Transport reactions"
       - confidence_score: 0
@@ -230769,7 +230106,7 @@
       - gene_reaction_rule: ""
       - rxnNotes: ""
       - eccodes: ""
-      - references: ""
+      - references: "PMID:11489939;PMID:17347912;PMID:20157782"
       - subsystem:
           - "Transport reactions"
       - confidence_score: 0
@@ -230784,7 +230121,7 @@
       - gene_reaction_rule: ""
       - rxnNotes: ""
       - eccodes: ""
-      - references: ""
+      - references: "PMID:15535801"
       - subsystem:
           - "Transport reactions"
       - confidence_score: 0
@@ -230799,7 +230136,7 @@
       - gene_reaction_rule: ""
       - rxnNotes: ""
       - eccodes: ""
-      - references: ""
+      - references: "PMID:19720082"
       - subsystem:
           - "Transport reactions"
       - confidence_score: 0
@@ -230814,7 +230151,7 @@
       - gene_reaction_rule: ""
       - rxnNotes: ""
       - eccodes: ""
-      - references: ""
+      - references: "PMID:19720082"
       - subsystem:
           - "Transport reactions"
       - confidence_score: 0
@@ -230829,7 +230166,7 @@
       - gene_reaction_rule: ""
       - rxnNotes: ""
       - eccodes: ""
-      - references: ""
+      - references: "PMID:19720082"
       - subsystem:
           - "Transport reactions"
       - confidence_score: 0
@@ -230844,7 +230181,7 @@
       - gene_reaction_rule: ""
       - rxnNotes: ""
       - eccodes: ""
-      - references: ""
+      - references: "PMID:19720082"
       - subsystem:
           - "Transport reactions"
       - confidence_score: 0
@@ -230874,7 +230211,7 @@
       - gene_reaction_rule: ""
       - rxnNotes: ""
       - eccodes: ""
-      - references: ""
+      - references: "PMID:19720082"
       - subsystem:
           - "Transport reactions"
       - confidence_score: 0
@@ -230889,7 +230226,7 @@
       - gene_reaction_rule: ""
       - rxnNotes: ""
       - eccodes: ""
-      - references: ""
+      - references: "PMID:19720082"
       - subsystem:
           - "Transport reactions"
       - confidence_score: 0
@@ -230904,7 +230241,7 @@
       - gene_reaction_rule: ""
       - rxnNotes: ""
       - eccodes: ""
-      - references: ""
+      - references: "PMID:20583174"
       - subsystem:
           - "Transport reactions"
       - confidence_score: 0
@@ -230919,7 +230256,7 @@
       - gene_reaction_rule: ""
       - rxnNotes: ""
       - eccodes: ""
-      - references: ""
+      - references: "PMID:21281499"
       - subsystem:
           - "Transport reactions"
       - confidence_score: 0
@@ -230934,7 +230271,7 @@
       - gene_reaction_rule: ""
       - rxnNotes: ""
       - eccodes: ""
-      - references: ""
+      - references: "PMID:21281499"
       - subsystem:
           - "Transport reactions"
       - confidence_score: 0
@@ -230949,7 +230286,7 @@
       - gene_reaction_rule: ""
       - rxnNotes: ""
       - eccodes: ""
-      - references: ""
+      - references: "PMID:21281499"
       - subsystem:
           - "Transport reactions"
       - confidence_score: 0
@@ -230979,7 +230316,7 @@
       - gene_reaction_rule: ""
       - rxnNotes: ""
       - eccodes: ""
-      - references: ""
+      - references: "PMID:19720082"
       - subsystem:
           - "Transport reactions"
       - confidence_score: 0
@@ -230994,7 +230331,7 @@
       - gene_reaction_rule: ""
       - rxnNotes: ""
       - eccodes: ""
-      - references: ""
+      - references: "PMID:19720082"
       - subsystem:
           - "Transport reactions"
       - confidence_score: 0
@@ -231009,7 +230346,7 @@
       - gene_reaction_rule: ""
       - rxnNotes: ""
       - eccodes: ""
-      - references: ""
+      - references: "PMID:3119938;PMID:6959231"
       - subsystem:
           - "Transport reactions"
       - confidence_score: 0
@@ -231024,7 +230361,7 @@
       - gene_reaction_rule: ""
       - rxnNotes: ""
       - eccodes: ""
-      - references: ""
+      - references: "PMID:16146704"
       - subsystem:
           - "Transport reactions"
       - confidence_score: 0
@@ -231039,7 +230376,7 @@
       - gene_reaction_rule: ""
       - rxnNotes: ""
       - eccodes: ""
-      - references: ""
+      - references: "PMID:2064600"
       - subsystem:
           - "Transport reactions"
       - confidence_score: 0
@@ -231054,7 +230391,7 @@
       - gene_reaction_rule: ""
       - rxnNotes: ""
       - eccodes: ""
-      - references: ""
+      - references: "PMID:19720082"
       - subsystem:
           - "Transport reactions"
       - confidence_score: 0
@@ -231068,8 +230405,8 @@
       - upper_bound: 1000
       - gene_reaction_rule: ""
       - rxnNotes: ""
-      - eccodes: ""
-      - references: ""
+      - eccodes: "1.1.1.62"
+      - references: "PMID:19720082"
       - subsystem:
           - "Transport reactions"
       - confidence_score: 0
@@ -231084,7 +230421,7 @@
       - gene_reaction_rule: ""
       - rxnNotes: ""
       - eccodes: ""
-      - references: ""
+      - references: "PMID:9266369"
       - subsystem:
           - "Transport reactions"
       - confidence_score: 0
@@ -231099,7 +230436,7 @@
       - gene_reaction_rule: ""
       - rxnNotes: ""
       - eccodes: ""
-      - references: ""
+      - references: "PMID:20157782"
       - subsystem:
           - "Transport reactions"
       - confidence_score: 0
@@ -231114,7 +230451,7 @@
       - gene_reaction_rule: ""
       - rxnNotes: ""
       - eccodes: ""
-      - references: ""
+      - references: "PMID:19720082"
       - subsystem:
           - "Transport reactions"
       - confidence_score: 0
@@ -231129,7 +230466,7 @@
       - gene_reaction_rule: ""
       - rxnNotes: ""
       - eccodes: ""
-      - references: ""
+      - references: "PMID:19720082"
       - subsystem:
           - "Transport reactions"
       - confidence_score: 0
@@ -231144,7 +230481,7 @@
       - gene_reaction_rule: ""
       - rxnNotes: ""
       - eccodes: ""
-      - references: ""
+      - references: "PMID:19720082"
       - subsystem:
           - "Transport reactions"
       - confidence_score: 0
@@ -231159,7 +230496,7 @@
       - gene_reaction_rule: ""
       - rxnNotes: ""
       - eccodes: ""
-      - references: ""
+      - references: "PMID:12828998"
       - subsystem:
           - "Transport reactions"
       - confidence_score: 0
@@ -231174,7 +230511,7 @@
       - gene_reaction_rule: ""
       - rxnNotes: ""
       - eccodes: ""
-      - references: ""
+      - references: "PMID:19720082"
       - subsystem:
           - "Transport reactions"
       - confidence_score: 0
@@ -231189,7 +230526,7 @@
       - gene_reaction_rule: ""
       - rxnNotes: ""
       - eccodes: ""
-      - references: ""
+      - references: "PMID:6959231"
       - subsystem:
           - "Transport reactions"
       - confidence_score: 0
@@ -231204,7 +230541,7 @@
       - gene_reaction_rule: ""
       - rxnNotes: ""
       - eccodes: ""
-      - references: ""
+      - references: "PMID:12828998;PMID:20026021;PMID:21463612;PMID:9498103"
       - subsystem:
           - "Transport reactions"
       - confidence_score: 0
@@ -231219,7 +230556,7 @@
       - gene_reaction_rule: ""
       - rxnNotes: ""
       - eccodes: ""
-      - references: ""
+      - references: "PMID:20026021"
       - subsystem:
           - "Transport reactions"
       - confidence_score: 0
@@ -231234,7 +230571,7 @@
       - gene_reaction_rule: ""
       - rxnNotes: ""
       - eccodes: ""
-      - references: ""
+      - references: "PMID:21215187"
       - subsystem:
           - "Transport reactions"
       - confidence_score: 0
@@ -231264,7 +230601,7 @@
       - gene_reaction_rule: ""
       - rxnNotes: ""
       - eccodes: ""
-      - references: ""
+      - references: "PMID:19720082"
       - subsystem:
           - "Transport reactions"
       - confidence_score: 0
@@ -231339,7 +230676,7 @@
       - gene_reaction_rule: ""
       - rxnNotes: ""
       - eccodes: ""
-      - references: ""
+      - references: "PMID:19720082"
       - subsystem:
           - "Transport reactions"
       - confidence_score: 0
@@ -231354,7 +230691,7 @@
       - gene_reaction_rule: ""
       - rxnNotes: ""
       - eccodes: ""
-      - references: ""
+      - references: "PMID:19720082"
       - subsystem:
           - "Transport reactions"
       - confidence_score: 0
@@ -231369,7 +230706,7 @@
       - gene_reaction_rule: ""
       - rxnNotes: ""
       - eccodes: ""
-      - references: ""
+      - references: "PMID:19720082"
       - subsystem:
           - "Transport reactions"
       - confidence_score: 0
@@ -261058,7 +260395,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR10066"
-      - name: ""
+      - name: "20alpha-Hydroxy-4-pregnen-3-one:NAD+ 20-oxidoreductase"
       - metabolites: !!omap
           - MAM00580c: -1
           - MAM02039c: 1
@@ -261144,7 +260481,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR10071"
-      - name: ""
+      - name: "5alpha-pregnan-20alpha-ol-3-one:NADP+ 20-oxidoreductase"
       - metabolites: !!omap
           - MAM01072c: 1
           - MAM02039c: 1
@@ -261162,7 +260499,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR10072"
-      - name: ""
+      - name: "17alpha,20alpha-Dihydroxypregn-4-en-3-one:NADP+ 20-oxidoreductase"
       - metabolites: !!omap
           - MAM00409c: 1
           - MAM02039c: 1
@@ -262231,6 +261568,51 @@
       - subsystem:
           - "Metabolism of other amino acids"
       - confidence_score: 4
+    - !!omap
+      - id: "MAR13084"
+      - name: ""
+      - metabolites: !!omap
+          - MAM01639c: -1
+          - MAM01639n: 1
+      - lower_bound: -1000
+      - upper_bound: 1000
+      - gene_reaction_rule: ""
+      - rxnNotes: ""
+      - eccodes: ""
+      - references: ""
+      - subsystem:
+          - "Transport reactions"
+      - confidence_score: 0
+    - !!omap
+      - id: "MAR13085"
+      - name: ""
+      - metabolites: !!omap
+          - MAM01686c: -1
+          - MAM01686n: 1
+      - lower_bound: -1000
+      - upper_bound: 1000
+      - gene_reaction_rule: ""
+      - rxnNotes: ""
+      - eccodes: ""
+      - references: ""
+      - subsystem:
+          - "Transport reactions"
+      - confidence_score: 0
+    - !!omap
+      - id: "MAR13086"
+      - name: ""
+      - metabolites: !!omap
+          - MAM02847c: 1
+          - MAM02847n: -1
+      - lower_bound: 0
+      - upper_bound: 1000
+      - gene_reaction_rule: "(Nup93-1 or Nup93-2) and Aladin and CG18787 and Dbp80 and Elys and Gle1 and Gp210 and Mtor and Ndc1 and Nup107 and Nup133 and Nup153 and Nup154 and Nup160 and Nup188 and Nup205 and Nup214 and Nup35 and Nup358 and Nup37 and Nup43 and Nup44A and Nup50 and Nup54 and Nup58 and Nup62 and Nup75 and Nup98-96 and Rae1 and Sec13 and mbo"
+      - rxnNotes: ""
+      - eccodes: ""
+      - references: "PMID:25836925"
+      - subsystem:
+          - "Transport reactions"
+      - confidence_score: 2
     - !!omap
       - id: "MAR20001"
       - name: ""
@@ -262775,21 +262157,21 @@
           - "Glutathione metabolism"
       - confidence_score: 2
     - !!omap
-      - id: "MAR00114"
+      - id: "MAR00113"
       - name: "C-3 Sterol Dehydrogenase (4-Methylzymosterol)"
       - metabolites: !!omap
           - MAM00809r: 1
           - MAM00953r: -1
           - MAM01596r: 1
           - MAM02039r: 1
-          - MAM02552r: -1
-          - MAM02553r: 1
+          - MAM02554r: -1
+          - MAM02555r: 1
       - lower_bound: 0
       - upper_bound: 1000
       - gene_reaction_rule: ""
       - rxnNotes: "reaction added by gap filling"
       - eccodes: ""
-      - references: "PMID:12829805"
+      - references: "PMID:10710235;PMID:14506130"
       - subsystem:
           - "Cholesterol metabolism"
       - confidence_score: 0
@@ -262814,20 +262196,37 @@
           - "Cholesterol metabolism"
       - confidence_score: 0
     - !!omap
-      - id: "MAR00228"
-      - name: "7-Dehydrocholesterol Reductase"
+      - id: "MAR00222"
+      - name: "24-Dehydrocholesterol Reductase [Precursor]"
       - metabolites: !!omap
           - MAM01450r: 1
+          - MAM01675r: -1
+          - MAM01802r: 1
+          - MAM01803r: -1
+      - lower_bound: 0
+      - upper_bound: 1000
+      - gene_reaction_rule: ""
+      - rxnNotes: "reaction added by gap filling"
+      - eccodes: "2.3.1.42"
+      - references: "PMID:17984220;PMID:19520779;PMID:19520780"
+      - subsystem:
+          - "Cholesterol metabolism"
+      - confidence_score: 0
+    - !!omap
+      - id: "MAR00227"
+      - name: "7-Dehydrocholesterol Reductase"
+      - metabolites: !!omap
+          - MAM01189r: -1
+          - MAM01675r: 1
           - MAM02039r: -1
           - MAM02554r: 1
           - MAM02555r: -1
-          - MAM02805r: -1
       - lower_bound: 0
       - upper_bound: 1000
       - gene_reaction_rule: ""
       - rxnNotes: "reaction added by gap filling"
       - eccodes: "1.3.1.21"
-      - references: "PMID:15670717"
+      - references: "PMID:9465114"
       - subsystem:
           - "Cholesterol metabolism"
       - confidence_score: 0
@@ -262862,16 +262261,16 @@
           - "Cholesterol metabolism"
       - confidence_score: 0
     - !!omap
-      - id: "MAR01510"
+      - id: "MAR01508"
       - name: "Lathosterol Oxidase"
       - metabolites: !!omap
+          - MAM01066r: -1
+          - MAM01189r: 1
           - MAM02039r: -1
           - MAM02040r: 2
-          - MAM02343r: -1
           - MAM02554r: 1
           - MAM02555r: -1
           - MAM02630r: -1
-          - MAM02805r: 1
       - lower_bound: 0
       - upper_bound: 1000
       - gene_reaction_rule: ""
@@ -262941,24 +262340,6 @@
       - subsystem:
           - "Cholesterol metabolism"
       - confidence_score: 0
-    - !!omap
-      - id: "MAR02206"
-      - name: "Lanosterol D24-Reductase"
-      - metabolites: !!omap
-          - MAM01066r: 1
-          - MAM02039r: 1
-          - MAM02343r: -1
-          - MAM02554r: -1
-          - MAM02555r: 1
-      - lower_bound: -1000
-      - upper_bound: 1000
-      - gene_reaction_rule: ""
-      - rxnNotes: "reaction added by gap filling"
-      - eccodes: "1.3.1.72"
-      - references: "PMID:7946524"
-      - subsystem:
-          - "Cholesterol metabolism"
-      - confidence_score: 0
     - !!omap
       - id: "MAR05151"
       - name: ""
@@ -263019,20 +262400,19 @@
           - "Protein assembly"
       - confidence_score: 0
     - !!omap
-      - id: "MAR04497"
-      - name: ""
+      - id: "MAR04106"
+      - name: "malonyl-CoA carboxy-lyase (acetyl-CoA-forming)"
       - metabolites: !!omap
-          - MAM00900m: 1
-          - MAM02039m: 1
-          - MAM02142m: -1
-          - MAM02552m: -1
-          - MAM02553m: 1
+          - MAM01261m: 1
+          - MAM01596m: 1
+          - MAM02039m: -1
+          - MAM02444m: -1
       - lower_bound: 0
       - upper_bound: 1000
       - gene_reaction_rule: ""
       - rxnNotes: "reaction added by gap filling"
-      - eccodes: "1.1.1.59"
-      - references: "PMID:13672942"
+      - eccodes: "4.1.1.9"
+      - references: "PMID:101148;PMID:10455107;PMID:15003260;PMID:4180063;PMID:4731972;PMID:5578610;PMID:9869665"
       - subsystem:
           - "Propanoate metabolism"
       - confidence_score: 0
@@ -263053,7 +262433,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR06981"
-      - name: ""
+      - name: "4-Trimethylammoniobutanal:NAD+ 1-oxidoreductase"
       - metabolites: !!omap
           - MAM01034c: -1
           - MAM01922c: 1
@@ -263152,7 +262532,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR06651"
-      - name: ""
+      - name: "all-trans-Retinal 11-cis-trans-isomerase"
       - metabolites: !!omap
           - MAM00290c: 1
           - MAM02832c: -1
@@ -263427,7 +262807,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR08615"
-      - name: ""
+      - name: "ATP:cob(I)alamin Co-beta-adenosyltransferase"
       - metabolites: !!omap
           - MAM01598m: 1
           - MAM01599m: -1
@@ -263445,7 +262825,7 @@
       - confidence_score: 0
     - !!omap
       - id: "MAR08616"
-      - name: ""
+      - name: "ATP:cob(I)alamin Co-beta-adenosyltransferase"
       - metabolites: !!omap
           - MAM01371m: -1
           - MAM01598m: -1
diff --git a/model/dependencies.txt b/model/dependencies.txt
index a13e37e..dd6c8ad 100644
--- a/model/dependencies.txt
+++ b/model/dependencies.txt
@@ -1,5 +1,5 @@
 MATLAB	9.10.0.1602886 (R2021a)
 libSBML	5.19.0
-RAVEN_toolbox	commit 2c9e583
+RAVEN_toolbox	2.7.6
 COBRA_toolbox	3.3.0
-Human-GEM	1.11.0
+Human-GEM	1.12.0 + PR #420
diff --git a/model/metabolites.tsv b/model/metabolites.tsv
index d3942ad..6e9f050 100644
--- a/model/metabolites.tsv
+++ b/model/metabolites.tsv
@@ -183,7 +183,7 @@ mets	metBiGGID	metChEBIID	metEHMNID	metHMDBID	metHMR2ID	metHepatoNET1ID	metKEGGI
 "MAM00095x"	"c226coa"	"CHEBI:65132"	"CE4827"	""	"m00095p"	""	"C16169"	"LMFA07050050"	"MNXM3234;MNXM91778"	""	"CE4827;c226coa"	"m00095p"	"MAM00095"
 "MAM00095r"	"c226coa"	"CHEBI:65132"	"CE4827"	""	"m00095r"	""	"C16169"	"LMFA07050050"	"MNXM3234;MNXM91778"	""	"CE4827;c226coa"	"m00095r"	"MAM00095"
 "MAM00096c"	""	""	""	""	"m00096c"	""	"C02100"	""	"MNXM92760"	""	"M00096"	"m00096c"	"MAM00096"
-"MAM00097e"	"gluala"	"CHEBI:50619"	""	"HMDB06248"	"m00097s"	""	"C03740"	""	"MNXM59390"	"440103"	"gluala"	"m00097s"	"MAM00097"
+"MAM00097e"	"gluala"	"CHEBI:50619"	""	"HMDB06248"	"m00097s"	""	""	""	"MNXM59390"	"440103"	"gluala"	"m00097s"	"MAM00097"
 "MAM00098c"	""	""	"CE2566"	""	"m00098c"	""	""	""	"MNXM162637"	""	"CE2566"	"m00098c"	"MAM00098"
 "MAM00098x"	""	""	"CE2566"	""	"m00098p"	""	""	""	"MNXM162637"	""	"CE2566"	"m00098p"	"MAM00098"
 "MAM00098r"	""	""	"CE2566"	""	"m00098r"	""	""	""	"MNXM162637"	""	"CE2566"	"m00098r"	"MAM00098"
@@ -1270,7 +1270,7 @@ mets	metBiGGID	metChEBIID	metEHMNID	metHMDBID	metHMR2ID	metHepatoNET1ID	metKEGGI
 "MAM00810e"	""	"CHEBI:27453"	""	""	"m00810s"	"HC01440"	"C05394"	""	"MNXM4339"	"440653"	"HC01440"	"m00810s"	"MAM00810"
 "MAM00811c"	""	""	"CE4811"	""	"m00811c"	""	""	""	"MNXM164249"	""	"CE4811"	"m00811c"	"MAM00811"
 "MAM00812e"	""	""	""	""	"m00812s"	"HC01446"	"C05403"	""	"MNXM36578"	""	"HC01446"	"m00812s"	"MAM00812"
-"MAM00813x"	""	"CHEBI:28542"	""	"HMDB02057"	"m00813p"	""	"C07297"	""	"MNXM4346"	"441253"	"C07297"	"m00813p"	"MAM00813"
+"MAM00813x"	""	"CHEBI:57291"	""	"HMDB02057"	"m00813p"	""	"C07297"	""	"MNXM4346"	"441253"	"C07297"	"m00813p"	"MAM00813"
 "MAM00814x"	""	""	"CE4826"	""	"m00814p"	""	""	"LMFA07050068"	"MNXM91783"	""	"CE4826"	"m00814p"	"MAM00814"
 "MAM00815c"	"mercplac"	"CHEBI:28580"	""	""	"m00815c"	""	"C05823"	""	"MNXM6822;MNXM91416"	"160645"	"mercplac"	"m00815c"	"MAM00815"
 "MAM00816c"	"mercplaccys"	""	""	"HMDB06512"	"m00816c"	""	""	""	"MNXM10053"	"193536"	"mercplaccys"	"m00816c"	"MAM00816"
@@ -2593,10 +2593,10 @@ mets	metBiGGID	metChEBIID	metEHMNID	metHMDBID	metHMR2ID	metHepatoNET1ID	metKEGGI
 "MAM01613g"	"core8"	""	""	""	"m01613g"	""	""	""	"MNXM16842"	""	"core8"	"m01613g"	"MAM01613"
 "MAM01613c"	"core8"	""	""	""	"m01613c"	""	""	""	"MNXM16842"	""	"core8"	"m01613c"	"MAM01613"
 "MAM01613e"	"core8"	""	""	""	"m01613s"	""	""	""	"MNXM16842"	""	"core8"	"m01613s"	"MAM01613"
-"MAM01614c"	"crtstrn"	"CHEBI:101161"	""	""	"m01614c"	""	""	"LMST02030092"	"MNXM162953;MNXM859"	""	"crtstrn"	"m01614c"	"MAM01614"
-"MAM01614m"	"crtstrn"	"CHEBI:101161"	""	""	"m01614m"	""	""	"LMST02030092"	"MNXM162953;MNXM859"	""	"crtstrn"	"m01614m"	"MAM01614"
-"MAM01614r"	"crtstrn"	"CHEBI:101161"	""	""	"m01614r"	""	""	"LMST02030092"	"MNXM162953;MNXM859"	""	"crtstrn"	"m01614r"	"MAM01614"
-"MAM01614e"	"crtstrn"	"CHEBI:101161"	""	""	"m01614s"	""	""	"LMST02030092"	"MNXM162953;MNXM859"	""	"crtstrn"	"m01614s"	"MAM01614"
+"MAM01614c"	"crtstrn"	"CHEBI:16827"	""	""	"m01614c"	""	""	"LMST02030092"	"MNXM162953;MNXM859"	""	"crtstrn"	"m01614c"	"MAM01614"
+"MAM01614m"	"crtstrn"	"CHEBI:16827"	""	""	"m01614m"	""	""	"LMST02030092"	"MNXM162953;MNXM859"	""	"crtstrn"	"m01614m"	"MAM01614"
+"MAM01614r"	"crtstrn"	"CHEBI:16827"	""	""	"m01614r"	""	""	"LMST02030092"	"MNXM162953;MNXM859"	""	"crtstrn"	"m01614r"	"MAM01614"
+"MAM01614e"	"crtstrn"	"CHEBI:16827"	""	""	"m01614s"	""	""	"LMST02030092"	"MNXM162953;MNXM859"	""	"crtstrn"	"m01614s"	"MAM01614"
 "MAM01615c"	"crtsl"	"CHEBI:17650"	""	"HMDB00063"	"m01615c"	""	"C00735"	"LMST02030001"	"MNXM162531;MNXM543"	"657311"	"crtsl"	"m01615c"	"MAM01615"
 "MAM01615m"	"crtsl"	"CHEBI:17650"	""	"HMDB00063"	"m01615m"	""	"C00735"	"LMST02030001"	"MNXM162531;MNXM543"	"657311"	"crtsl"	"m01615m"	"MAM01615"
 "MAM01615r"	"crtsl"	"CHEBI:17650"	""	"HMDB00063"	"m01615r"	""	"C00735"	"LMST02030001"	"MNXM162531;MNXM543"	"657311"	"crtsl"	"m01615r"	"MAM01615"
@@ -2636,7 +2636,7 @@ mets	metBiGGID	metChEBIID	metEHMNID	metHMDBID	metHMR2ID	metHepatoNET1ID	metKEGGI
 "MAM01630m"	"cytd"	"CHEBI:17562"	""	"HMDB00089"	"m01630m"	"HC00381"	"C00475"	""	"MNXM338"	"6175"	"cytd"	"m01630m"	"MAM01630"
 "MAM01630n"	"cytd"	"CHEBI:17562"	""	"HMDB00089"	"m01630n"	"HC00381"	"C00475"	""	"MNXM338"	"6175"	"cytd"	"m01630n"	"MAM01630"
 "MAM01630e"	"cytd"	"CHEBI:17562"	""	"HMDB00089"	"m01630s"	"HC00381"	"C00475"	""	"MNXM338"	"6175"	"cytd"	"m01630s"	"MAM01630"
-"MAM01631m"	""	"CHEBI:18070"	""	""	"m01631m"	""	"C00524"	""	"MNXM5749"	""	"M01631"	"m01631m"	"MAM01631"
+"MAM01631m"	""	"CHEBI:83739"	""	""	"m01631m"	""	"C00524"	""	"MNXM5749"	""	"M01631"	"m01631m"	"MAM01631"
 "MAM01632c"	"csn"	"CHEBI:16040"	""	"HMDB00630"	"m01632c"	""	"C00380"	""	"MNXM761"	"597"	"csn"	"m01632c"	"MAM01632"
 "MAM01632e"	"csn"	"CHEBI:16040"	""	"HMDB00630"	"m01632s"	""	"C00380"	""	"MNXM761"	"597"	"csn"	"m01632s"	"MAM01632"
 "MAM01633c"	"3aib__D"	"CHEBI:16320"	""	""	"m01633c"	"HC00715"	"C01205"	""	"MNXM162802;MNXM786"	"5459822"	"3aib_D"	"m01633c"	"MAM01633"
@@ -2654,6 +2654,7 @@ mets	metBiGGID	metChEBIID	metEHMNID	metHMDBID	metHMR2ID	metHepatoNET1ID	metKEGGI
 "MAM01638e"	"ala__D"	"CHEBI:15570"	""	"HMDB01310"	"m01638s"	""	"C00133"	""	"MNXM156"	"71080"	"ala_D"	"m01638s"	"MAM01638"
 "MAM01639c"	"damp"	"CHEBI:17713"	""	""	"m01639c"	"HC00304"	"C00360"	""	"MNXM432"	"12599"	"damp"	"m01639c"	"MAM01639"
 "MAM01639l"	"damp"	"CHEBI:17713"	""	""	"m01639l"	"HC00304"	"C00360"	""	"MNXM432"	"12599"	"damp"	"m01639l"	"MAM01639"
+"MAM01639n"	"damp"	"CHEBI:17713"	""	""	""	"HC00304"	"C00360"	""	"MNXM432"	"12599"	"damp"	""	"MAM01639"
 "MAM01640c"	"arg__D"	"CHEBI:15816"	""	"HMDB03416"	"m01640c"	""	"C00792"	""	"MNXM1552;MNXM70"	"71070"	"arg_D"	"m01640c"	"MAM01640"
 "MAM01640x"	"arg__D"	"CHEBI:15816"	""	"HMDB03416"	"m01640p"	""	"C00792"	""	"MNXM1552;MNXM70"	"71070"	"arg_D"	"m01640p"	"MAM01640"
 "MAM01640e"	"arg__D"	"CHEBI:15816"	""	"HMDB03416"	"m01640s"	""	"C00792"	""	"MNXM1552;MNXM70"	"71070"	"arg_D"	"m01640s"	"MAM01640"
@@ -2691,7 +2692,7 @@ mets	metBiGGID	metChEBIID	metEHMNID	metHMDBID	metHMR2ID	metHepatoNET1ID	metKEGGI
 "MAM01655c"	"dhdascb"	"CHEBI:17242"	""	"HMDB01264"	"m01655c"	""	"C00425"	""	"MNXM250"	"210328"	"dhdascb"	"m01655c"	"MAM01655"
 "MAM01655e"	"dhdascb"	"CHEBI:17242"	""	"HMDB01264"	"m01655s"	""	"C00425"	""	"MNXM250"	"210328"	"dhdascb"	"m01655s"	"MAM01655"
 "MAM01656c"	"dedol__L"	""	""	""	"m01656c"	""	""	""	"MNXM148199"	""	"dedol_L"	"m01656c"	"MAM01656"
-"MAM01657c"	"dedoldp__L"	""	""	""	"m01657c"	""	"C05859"	""	"MNXM148197"	""	"dedoldp_L"	"m01657c"	"MAM01657"
+"MAM01657c"	"dedoldp__L"	"CHEBI:136960"	""	""	"m01657c"	""	"C05859"	""	"MNXM148197"	""	"dedoldp_L"	"m01657c"	"MAM01657"
 "MAM01658c"	"dedolp__L"	""	""	""	"m01658c"	""	""	""	"MNXM148198"	""	"dedolp_L"	"m01658c"	"MAM01658"
 "MAM01659c"	"dheas"	"CHEBI:16814"	""	"HMDB01032"	"m01659c"	"HC01314"	"C04555"	""	"MNXM991"	"12594"	"dheas"	"m01659c"	"MAM01659"
 "MAM01659r"	"dheas"	"CHEBI:16814"	""	"HMDB01032"	"m01659r"	"HC01314"	"C04555"	""	"MNXM991"	"12594"	"dheas"	"m01659r"	"MAM01659"
@@ -2756,6 +2757,7 @@ mets	metBiGGID	metChEBIID	metEHMNID	metHMDBID	metHMR2ID	metHepatoNET1ID	metKEGGI
 "MAM01686c"	"dgmp"	"CHEBI:16192"	""	""	"m01686c"	"HC00306"	"C00362"	""	"MNXM546"	"65059"	"dgmp"	"m01686c"	"MAM01686"
 "MAM01686l"	"dgmp"	"CHEBI:16192"	""	""	"m01686l"	"HC00306"	"C00362"	""	"MNXM546"	"65059"	"dgmp"	"m01686l"	"MAM01686"
 "MAM01686m"	"dgmp"	"CHEBI:16192"	""	""	"m01686m"	"HC00306"	"C00362"	""	"MNXM546"	"65059"	"dgmp"	"m01686m"	"MAM01686"
+"MAM01686n"	"dgmp"	"CHEBI:16192"	""	""	""	"HC00306"	"C00362"	""	"MNXM546"	"65059"	"dgmp"	""	"MAM01686"
 "MAM01687r"	"dgpi_prot_hs"	""	""	""	"m01687r"	""	""	""	"MNXM17162"	""	"dgpi_prot_hs"	"m01687r"	"MAM01687"
 "MAM01687c"	"dgpi_prot_hs"	""	""	""	"m01687c"	""	""	""	"MNXM17162"	""	"dgpi_prot_hs"	"m01687c"	"MAM01687"
 "MAM01687e"	"dgpi_prot_hs"	""	""	""	"m01687s"	""	""	""	"MNXM17162"	""	"dgpi_prot_hs"	"m01687s"	"MAM01687"
@@ -4799,6 +4801,7 @@ mets	metBiGGID	metChEBIID	metEHMNID	metHMDBID	metHMR2ID	metHepatoNET1ID	metKEGGI
 "MAM02846c"	"ru5p__D"	"CHEBI:17363"	""	""	"m02846c"	"HC00188"	"C00199"	""	"MNXM145;MNXM186"	"439184"	"ru5p_D"	"m02846c"	"MAM02846"
 "MAM02846r"	"ru5p__D"	"CHEBI:17363"	""	""	"m02846r"	"HC00188"	"C00199"	""	"MNXM145;MNXM186"	"439184"	"ru5p_D"	"m02846r"	"MAM02846"
 "MAM02847c"	""	""	""	""	"m02847c"	""	"C00046"	""	"MNXM1248;MNXM90337"	""	"M02847"	"m02847c"	"MAM02847"
+"MAM02847n"	""	""	""	""	""	""	"C00046"	""	"MNXM1248;MNXM90337"	""	"M02847"	""	"MAM02847"
 "MAM02848c"	""	""	""	""	"m02848c"	""	"C03638"	""	"MNXM93895"	""	"M02848"	"m02848c"	"MAM02848"
 "MAM02849c"	""	""	""	""	"m02849c"	""	"C04312"	""	"MNXM93896"	""	"M02849"	"m02849c"	"MAM02849"
 "MAM02850c"	""	""	""	""	"m02850c"	""	"C14868"	""	"MNXM12905"	""	"M02850"	"m02850c"	"MAM02850"
@@ -8110,6 +8113,7 @@ mets	metBiGGID	metChEBIID	metEHMNID	metHMDBID	metHMR2ID	metHepatoNET1ID	metKEGGI
 "MAM20053c"	""	"CHEBI:80535"	""	""	""	""	"C16503"	""	"MNXM5369"	"5275508"	""	""	"MAM20053"
 "MAM00809r"	"4mzym_int2"	"CHEBI:50593"	""	""	""	"HC02109"	"C15816"	"LMST01010167"	"MNXM162901;MNXM36392;MNXM8744"	""	"4mzym_int2"	"m00809r"	"MAM00809"
 "MAM01066r"	"chlstol"	"CHEBI:16290"	""	""	""	"HC01452"	"C05439"	""	"MNXM162749;MNXM830"	""	"chlstol"	"m01066r"	"MAM01066"
+"MAM01189r"	"ddsmsterol"	"CHEBI:27910"	"CE2321"	"HMDB03896"	""	"HC01373"	"C05107"	"LMST01010121"	"MNXM162832;MNXM941"	"440558"	"ddsmsterol"	"m01189r"	"MAM01189"
 "MAM02932r"	"Ssq23epx"	"CHEBI:15441"	""	""	""	"HC00645"	"C01054"	""	"MNXM130"	"53477723"	"Ssq23epx"	"m02932r"	"MAM02932"
 "MAM00356r"	""	""	"CE5842"	""	"m00356r"	""	""	""	"MNXM9688"	"53481465"	"CE5842"	"m00356r"	"MAM00356"
 "MAM00360r"	""	""	"CE5655"	""	"m00360r"	""	""	""	"MNXM163114"	"53481467"	"CE5655"	"m00360r"	"MAM00360"
diff --git a/model/reactions.tsv b/model/reactions.tsv
index 7417683..2410d45 100644
--- a/model/reactions.tsv
+++ b/model/reactions.tsv
@@ -172,7 +172,6 @@ rxns	rxnBiGGID	rxnEHMNID	rxnHMR2ID	rxnHepatoNET1ID	rxnKEGGID	rxnMetaNetXID	rxnRE
 "MAR07709"	"3HBCDm"	""	"HMR_7709"	""	"R03027"	"MNXR107898;MNXR94890"	""	"RCR14214"	"3HBCDm"	"HMR_7709"	""	""	""	0
 "MAR04052"	"PRPPS"	"R01049C"	"HMR_4052"	"r0247"	"R01049"	"MNXR103215;MNXR106802"	""	"RCR14215"	"PRPPS"	"HMR_4052"	""	""	""	0
 "MAR04304"	"G6PDH2er"	""	"HMR_4304"	"r0198"	"R00835"	"MNXR99907"	""	"RCR11100"	"G6PDH2rer"	"HMR_4304"	""	""	""	0
-"MAR04306"	"G6PDH2r"	""	"HMR_4306"	"r0199"	"R00835"	"MNXR99907"	""	"RCR11101"	"G6PDH2r"	"HMR_4306"	""	""	""	0
 "MAR04350"	"RBK"	"R01051C"	"HMR_4350"	"r0248"	"R01051"	"MNXR103431;MNXR106804"	""	"RCR11102"	"RBK"	"HMR_4350"	""	""	""	0
 "MAR04351"	""	"R01056C"	"HMR_4351"	"r0249"	"R01056"	"MNXR104084;MNXR106809"	""	"RCR10286"	"r0249"	"HMR_4351"	""	""	""	0
 "MAR04352"	"RPI"	"R01056C"	"HMR_4352"	"r0250"	"R01056"	"MNXR104084;MNXR106809"	""	"RCR11103"	"RPI"	"HMR_4352"	""	""	""	0
@@ -1121,7 +1120,7 @@ rxns	rxnBiGGID	rxnEHMNID	rxnHMR2ID	rxnHepatoNET1ID	rxnKEGGID	rxnMetaNetXID	rxnRE
 "MAR04187"	"BPNT2"	"R00508C"	"HMR_4187"	"r0132"	"R00508"	"MNXR96322"	""	"RCR10598"	"BPNT2"	"HMR_4187"	""	""	""	0
 "MAR04188"	""	""	"HMR_4188"	"r1332"	""	"MNXR105460"	""	"RCR14479"	"r1332"	"HMR_4188"	""	""	""	0
 "MAR04701"	""	""	"HMR_4701"	""	"R07243"	"MNXR110928"	""	"RCR11649"	"HMR_4701"	"HMR_4701"	""	""	""	0
-"MAR04840"	""	""	"HMR_4840"	"r0795"	"R00864"	"MNXR105387"	""	"RCR11650"	"r0795"	"HMR_4840"	""	""	""	0
+"MAR04840"	""	""	"HMR_4840"	"r0795"	"R00864"	"MNXR105387"	""	"RCR11650"	"r0795"	"HMR_4840"	""	""	""	1
 "MAR04842"	""	""	"HMR_4842"	"r0800"	""	"MNXR105389"	""	"RCR14480"	"r0800"	"HMR_4842"	""	""	""	0
 "MAR08662"	"ITCOAL1m"	""	"HMR_8662"	""	"R02405"	"MNXR100883"	""	"RCR11651"	"ITCOAL1m"	"HMR_8662"	""	""	""	0
 "MAR08663"	"ITCOALm"	""	"HMR_8663"	""	"R02404"	"MNXR100884"	""	"RCR11652"	"ITCOALm"	"HMR_8663"	""	""	""	0
@@ -2986,7 +2985,6 @@ rxns	rxnBiGGID	rxnEHMNID	rxnHMR2ID	rxnHepatoNET1ID	rxnKEGGID	rxnMetaNetXID	rxnRE
 "MAR00600"	""	""	"HMR_0600"	"r1221"	"R02239"	""	""	"RCR10858"	"HMR_0600"	"HMR_0600"	""	""	""	0
 "MAR00601"	""	""	"HMR_0601"	"r1222"	"R02239"	""	""	"RCR13166"	"HMR_0601"	"HMR_0601"	""	""	""	0
 "MAR00602"	""	""	"HMR_0602"	"r1287"	"R02239"	""	""	"RCR13167"	"HMR_0602"	"HMR_0602"	""	""	""	0
-"MAR00607"	""	""	"HMR_0607"	"r1238"	"R01799"	""	""	"RCR13168"	"HMR_0607"	"HMR_0607"	""	""	""	0
 "MAR00610"	"CDIPTr"	""	"HMR_0610"	"r1197"	"R01802"	"MNXR96527"	""	"RCR13169"	"CDIPTr"	"HMR_0610"	""	""	""	0
 "MAR00613"	""	""	"HMR_0613"	"r1196"	"R01802"	""	""	"RCR10859"	"HMR_0613"	"HMR_0613"	""	""	""	0
 "MAR00614"	"CEPTE"	""	"HMR_0614"	"r1194"	"R02057"	"MNXR96611"	""	"RCR14580"	"CEPTE;HMR_0614"	"HMR_0614"	""	""	""	0
@@ -4234,15 +4232,15 @@ rxns	rxnBiGGID	rxnEHMNID	rxnHMR2ID	rxnHepatoNET1ID	rxnKEGGID	rxnMetaNetXID	rxnRE
 "MAR03984"	"CATp"	""	"HMR_3984"	"r0012"	"R00009"	"MNXR96455"	""	"RCR11007"	"CATp"	"HMR_3984"	"RHEA:20310"	"RHEA:20309"	""	0
 "MAR04201"	"PRDX"	"R00602C"	"HMR_4201"	"r0162"	"R00602"	"MNXR103159"	""	"RCR14124"	"PRDX"	"HMR_4201"	"RHEA:30692"	"RHEA:30691"	""	0
 "MAR04202"	"ALCD1"	""	"HMR_4202"	""	"R00605"	"MNXR95708"	""	"RCR14125"	"ALCD1"	"HMR_4202"	"RHEA:19402"	"RHEA:19401"	""	0
-"MAR05127"	""	""	"HMR_5127"	"r1085"	""	""	""	"RCR14752"	""	"HMR_5127"	""	""	""	0
+"MAR05127"	""	""	"HMR_5127"	"r1085"	""	""	""	"RCR14752"	""	"HMR_5127"	""	""	""	1
 "MAR05128"	"EX_nh4_e"	""	"HMR_5128"	"r1086"	""	"MNXR98786"	""	"RCR30284"	""	"HMR_5128"	""	""	""	0
 "MAR05363"	"PPA2"	""	"HMR_5363"	"r1296"	"R00138"	"MNXR103069"	""	"RCR11008"	"PPA2"	"HMR_5363"	""	""	""	0
 "MAR05406"	"H2CO3D"	""	"HMR_5406"	"r1417"	"R00132"	"MNXR100482"	""	"RCR14126"	"H2CO3D"	"HMR_5406"	""	""	""	0
 "MAR05409"	""	""	"HMR_5409"	"r1420"	""	""	""	"RCR30285"	"HMR_5409"	"HMR_5409"	""	""	""	0
 "MAR07794"	"PPAn"	""	"HMR_7794"	""	"R00004"	"MNXR100808"	""	"RCR10436"	"PPAn"	"HMR_7794"	"RHEA:24577"	"RHEA:24576"	""	0
 "MAR08617"	"PPA2m"	""	"HMR_8617"	""	"R00138"	"MNXR103069"	""	"RCR14127"	"PPA2m"	"HMR_8617"	""	""	""	0
-"MAR08749"	"H2CO3D2"	""	"HMR_8749"	""	""	"MNXR100483"	""	"RCR14128"	"HMR_8749"	"HMR_8749"	""	""	""	0
-"MAR08750"	"H2CO3D2m"	""	"HMR_8750"	""	""	"MNXR100483"	""	"RCR14129"	"HMR_8750"	"HMR_8750"	""	""	""	0
+"MAR08749"	"H2CO3D2"	""	"HMR_8749"	""	""	"MNXR100483"	""	"RCR14128"	"HMR_8749"	"HMR_8749"	""	""	""	1
+"MAR08750"	"H2CO3D2m"	""	"HMR_8750"	""	""	"MNXR100483"	""	"RCR14129"	"HMR_8750"	"HMR_8750"	""	""	""	1
 "MAR08751"	"H2CO3Dm"	""	"HMR_8751"	""	"R00132"	"MNXR100482"	""	"RCR14130"	"H2CO3Dm"	"HMR_8751"	""	""	""	0
 "MAR08752"	"PRDXl"	""	"HMR_8752"	""	""	"MNXR103159"	""	"RCR14131"	"PRDXl"	"HMR_8752"	"RHEA:30692"	"RHEA:30691"	""	0
 "MAR07741"	""	""	"HMR_7741"	""	"R01195"	"MNXR99609"	""	"RCR14753"	"HMR_7741"	"HMR_7741"	""	""	""	0
@@ -4516,7 +4514,6 @@ rxns	rxnBiGGID	rxnEHMNID	rxnHMR2ID	rxnHepatoNET1ID	rxnKEGGID	rxnMetaNetXID	rxnRE
 "MAR04882"	"URAt"	""	"HMR_4882"	"r0847"	""	"MNXR105147"	""	"RCR40442"	"URAt"	"HMR_4882"	"RHEA:27320"	"RHEA:27318"	"2.A.57.1.4"	0
 "MAR04885"	"H2Ot"	""	"HMR_4885"	"r0849"	""	"MNXR98641"	""	"RCR40013"	"H2Ot"	"HMR_4885"	"RHEA:29670"	"RHEA:29667"	""	0
 "MAR04896"	"O2t"	""	"HMR_4896"	"r0855"	""	"MNXR102090"	""	"RCR40014"	"O2t"	"HMR_4896"	""	""	""	0
-"MAR04911"	"PIt8"	""	"HMR_4911"	""	""	"MNXR102875"	""	"RCR40976"	""	"HMR_4911"	""	""	""	0
 "MAR04912"	"PIt9"	""	"HMR_4912"	""	""	"MNXR102876"	""	"RCR40977"	"PIt9"	"HMR_4912"	""	""	""	0
 "MAR04919"	"CO2t"	""	"HMR_4919"	"r0867"	""	"MNXR96810"	""	"RCR40107"	"CO2t"	"HMR_4919"	""	""	""	0
 "MAR04928"	"PYRt2"	""	"HMR_4928"	"r0873"	""	"MNXR103385"	""	"RCR40978"	"PYRt2r"	"HMR_4928"	"RHEA:64721"	"RHEA:64720"	"2.A.1.13.1"	0
@@ -6049,7 +6046,6 @@ rxns	rxnBiGGID	rxnEHMNID	rxnHMR2ID	rxnHepatoNET1ID	rxnKEGGID	rxnMetaNetXID	rxnRE
 "MAR06318"	"ORNt4m"	""	"HMR_6318"	"r0894"	""	""	""	"RCR20112"	"ORNt4m"	"HMR_6318"	""	""	"2.A.29.19.1"	0
 "MAR06321"	"LYStm"	""	"HMR_6321"	"r2414"	""	"MNXR101267"	""	"RCR20613"	"LYStm"	"HMR_6321"	""	""	"2.A.29.19.1"	0
 "MAR06323"	"ARGtm"	""	"HMR_6323"	"r0890"	""	"MNXR95954"	""	"RCR20113"	""	"HMR_6323"	""	""	""	0
-"MAR06324"	"ARGtm"	""	"HMR_6324"	"r2415"	""	"MNXR95954"	""	"RCR20114"	""	"HMR_6324"	""	""	"2.A.29.19.1"	0
 "MAR06325"	""	""	"HMR_6325"	"r1427"	""	"MNXR100645"	""	"RCR20115"	"r1427"	"HMR_6325"	""	""	""	0
 "MAR06326"	""	""	"HMR_6326"	"r2416"	""	"MNXR100647"	""	"RCR20116"	"r2416"	"HMR_6326"	""	""	"2.A.29.19.1"	0
 "MAR06327"	"CITRtm"	""	"HMR_6327"	"r2417"	""	"MNXR96735"	""	"RCR20117"	""	"HMR_6327"	""	""	"2.A.29.19.1"	0
@@ -6329,7 +6325,6 @@ rxns	rxnBiGGID	rxnEHMNID	rxnHMR2ID	rxnHepatoNET1ID	rxnKEGGID	rxnMetaNetXID	rxnRE
 "MAR08412"	"O2Stn"	""	"HMR_8412"	""	""	"MNXR102089"	""	"RCR20749"	"O2Stn"	"HMR_8412"	""	""	""	0
 "MAR08447"	"CYTK1"	""	"HMR_8447"	""	""	"MNXR97047"	""	"RCR20750"	"CYTDtn"	"HMR_8447"	""	""	""	0
 "MAR08476"	""	""	"HMR_8476"	""	""	""	""	"RCR21086"	"HMR_8476"	"HMR_8476"	""	""	"2.A.57.1.4"	0
-"MAR08639"	""	""	"HMR_8639"	""	""	""	""	"RCR21087"	"HMR_8639"	"HMR_8639"	""	""	""	0
 "MAR08789"	"NMNtn"	""	"HMR_8789"	""	""	"MNXR101972"	""	"RCR20751"	"NMNtn"	"HMR_8789"	""	""	""	0
 "MAR08828"	"PAIL_HStn"	""	"HMR_8828"	""	""	"MNXR102336"	""	"RCR20319"	"PAIL_HStn"	"HMR_8828"	""	""	""	0
 "MAR08837"	"PAIL45P_HStn"	""	"HMR_8837"	""	""	"MNXR102332"	""	"RCR21088"	"PAIL45P_HStn"	"HMR_8837"	""	""	""	0
@@ -7314,7 +7309,7 @@ rxns	rxnBiGGID	rxnEHMNID	rxnHMR2ID	rxnHepatoNET1ID	rxnKEGGID	rxnMetaNetXID	rxnRE
 "MAR00076"	"ARACHCRNt"	""	""	""	""	"MNXR95916"	""	""	"ARACHCRNt"	"ARACHCRNt"	""	""	""	0
 "MAR00077"	"ARACHDCOAtx"	""	""	""	""	"MNXR95917"	""	""	"ARACHDCOAtx"	"ARACHDCOAtx"	""	""	""	0
 "MAR00078"	"ARACHDtr"	""	""	""	""	"MNXR95918"	""	""	"ARACHDtr"	"ARACHDtr"	""	""	""	0
-"MAR00079"	"ARGtm"	""	""	""	""	"MNXR95954"	""	""	"ARGtm"	"ARGtm"	""	""	""	0
+"MAR00079"	"ARGtm"	""	"HMR_6324"	"r2415"	""	"MNXR95954"	""	"RCR20114"	"ARGtm"	"ARGtm"	""	""	"2.A.29.19.1"	0
 "MAR00080"	"ATPasel"	""	""	""	""	"MNXR96136"	""	""	"ATPasel"	"ATPasel"	"RHEA:13066"	"RHEA:13065"	""	0
 "MAR00081"	"B3GNT312g"	""	""	""	""	"MNXR96177"	""	""	"B3GNT312g"	"B3GNT312g"	""	""	""	0
 "MAR00082"	"B3GNT314g"	""	""	""	""	"MNXR96181"	""	""	"B3GNT314g"	"B3GNT314g"	""	""	""	0
@@ -7333,7 +7328,7 @@ rxns	rxnBiGGID	rxnEHMNID	rxnHMR2ID	rxnHepatoNET1ID	rxnKEGGID	rxnMetaNetXID	rxnRE
 "MAR00098"	"BVITEt"	""	""	""	""	"MNXR96355"	""	""	"BVITEt"	"BVITEt"	""	""	""	0
 "MAR00099"	"BZt"	""	""	""	""	"MNXR96370"	""	""	"BZt"	"BZt"	"RHEA:32814"	"RHEA:32811"	""	0
 "MAR00100"	"BZtr"	""	""	""	""	"MNXR96370"	""	""	"BZtr"	"BZtr"	"RHEA:32814"	"RHEA:32811"	""	0
-"MAR00101"	"C14STRr"	""	""	""	""	"MNXR96383"	""	""	"C14STRr"	"C14STRr"	""	""	""	0
+"MAR00101"	"C14STRr"	""	""	""	""	"MNXR96383"	""	""	"C14STRr;r0780"	"C14STRr"	""	""	""	0
 "MAR00102"	"C160CRNt"	""	""	""	""	"MNXR96385"	""	""	"C160CRNt"	"C160CRNt"	""	""	""	0
 "MAR00103"	"C161CPT12"	""	""	""	""	"MNXR96388"	""	""	"C161CPT12"	"C161CPT12"	""	""	""	0
 "MAR00104"	"C161CPT22"	""	""	""	""	"MNXR96388"	""	""	"C161CPT22"	"C161CPT22"	""	""	""	0
@@ -7348,7 +7343,7 @@ rxns	rxnBiGGID	rxnEHMNID	rxnHMR2ID	rxnHepatoNET1ID	rxnKEGGID	rxnMetaNetXID	rxnRE
 "MAR00115"	"C3STKR2r"	""	""	""	""	"MNXR96413"	""	""	"C3STKR2r"	"C3STKR2r"	""	""	""	0
 "MAR00119"	"CAATPS"	""	""	""	""	"MNXR96438"	""	""	"CAATPS"	"CAATPS"	""	""	""	0
 "MAR00120"	"CDPDAGtm"	""	""	""	""	"MNXR96550"	""	""	"CDPDAGtm"	"CDPDAGtm"	""	""	""	0
-"MAR00121"	"CDS"	""	""	""	""	"MNXR96563"	""	""	"CDS"	"CDS"	""	""	""	0
+"MAR00121"	"CDS"	""	"HMR_0607"	"r1238"	"R01799"	"MNXR96563"	""	"RCR13168"	"CDS;HMR_0607"	"CDS"	""	""	""	0
 "MAR00122"	"CDSm"	""	""	""	""	"MNXR96563"	""	""	"CDSm"	"CDSm"	""	""	""	0
 "MAR00123"	"CHSTEROLt2"	""	""	""	""	"MNXR96700"	""	""	"CHSTEROLt2"	"CHSTEROLt2"	"RHEA:39750"	"RHEA:39747"	""	0
 "MAR00124"	"CITRtm"	""	""	""	""	"MNXR96735"	""	""	"CITRtm"	"CITRtm"	""	""	""	0
@@ -7681,7 +7676,7 @@ rxns	rxnBiGGID	rxnEHMNID	rxnHMR2ID	rxnHepatoNET1ID	rxnKEGGID	rxnMetaNetXID	rxnRE
 "MAR01719"	"STCOAtx"	""	""	""	""	"MNXR104598"	""	""	"STCOAtx"	"STCOAtx"	""	""	""	0
 "MAR01721"	"STRDNCCRNt"	""	""	""	""	"MNXR104603"	""	""	"STRDNCCRNt"	"STRDNCCRNt"	""	""	""	0
 "MAR01724"	"T4HCINNMFM"	""	""	""	""	"MNXR104661"	""	""	"T4HCINNMFM"	"T4HCINNMFM"	""	""	""	0
-"MAR01728"	"TAGt"	""	""	""	""	"MNXR104712"	""	""	"TAGt"	"TAGt"	""	""	""	0
+"MAR01728"	"TAGt"	""	""	""	""	"MNXR104712"	""	""	"TAGHSTDe;TAGt"	"TAGt"	""	""	""	0
 "MAR01731"	"TCHOLAte"	""	""	""	""	"MNXR104745"	""	""	"TCHOLAte"	"TCHOLAte"	""	""	""	0
 "MAR01732"	"TCHOLAtx"	""	""	""	""	"MNXR104745"	""	""	"TCHOLAtx"	"TCHOLAtx"	""	""	""	0
 "MAR01733"	"TDCHOLAte"	""	""	""	""	"MNXR104750"	""	""	"TDCHOLAte"	"TDCHOLAte"	""	""	""	0
@@ -7713,7 +7708,7 @@ rxns	rxnBiGGID	rxnEHMNID	rxnHMR2ID	rxnHepatoNET1ID	rxnKEGGID	rxnMetaNetXID	rxnRE
 "MAR01824"	"XOL27OHtm"	""	""	""	""	"MNXR105232"	""	""	"XOL27OHtm"	"XOL27OHtm"	""	""	""	0
 "MAR01825"	"XOL7AH2tr"	""	""	""	""	"MNXR105233"	""	""	"XOL7AH2tr"	"XOL7AH2tr"	""	""	""	0
 "MAR01826"	"XOLDIOLONEtm"	""	""	""	""	"MNXR105235"	""	""	"XOLDIOLONEtm"	"XOLDIOLONEtm"	""	""	""	0
-"MAR01827"	"XOLEST2te"	""	""	""	""	"MNXR105236"	""	""	"XOLEST2te"	"XOLEST2te"	""	""	""	0
+"MAR01827"	"XOLEST2te"	""	""	""	""	"MNXR105236"	""	""	"XOLEST2HSTDle;XOLEST2te"	"XOLEST2te"	""	""	""	0
 "MAR01828"	"XOLESTte"	""	""	""	""	"MNXR105238"	""	""	"XOLESTte"	"XOLESTte"	""	""	""	0
 "MAR01829"	"XOLTRI24tc"	""	""	""	""	"MNXR105239"	""	""	"XOLTRI24tc"	"XOLTRI24tc"	""	""	""	0
 "MAR01849"	"XOLTRI24te"	""	""	""	""	"MNXR105239"	""	""	"XOLTRI24te"	"XOLTRI24te"	""	""	""	0
@@ -7771,7 +7766,6 @@ rxns	rxnBiGGID	rxnEHMNID	rxnHMR2ID	rxnHepatoNET1ID	rxnKEGGID	rxnMetaNetXID	rxnRE
 "MAR02196"	"r0756"	""	""	""	""	"MNXR94928"	""	""	"r0756"	"r0756"	""	""	""	0
 "MAR02197"	"r0757"	""	""	""	""	"MNXR94929"	""	""	"r0757"	"r0757"	""	""	""	0
 "MAR02198"	"r0774"	""	""	""	""	"MNXR105381"	""	""	"r0774"	"r0774"	"RHEA:31242"	"RHEA:31239"	""	0
-"MAR02199"	""	""	""	""	""	""	""	""	"r0780"	"r0780"	""	""	""	0
 "MAR02207"	"ACOAR2m"	""	""	""	""	"MNXR95370"	""	""	"r0791"	"r0791"	"RHEA:44959"	"RHEA:44956"	""	0
 "MAR02216"	"MALICITtm"	""	""	""	""	"MNXR101344"	""	""	"r0913"	"r0913"	""	""	""	0
 "MAR02220"	"r0915"	""	""	""	""	"MNXR96752"	""	""	"r0915"	"r0915"	"RHEA:28838"	"RHEA:28835"	""	0
@@ -8269,81 +8263,58 @@ rxns	rxnBiGGID	rxnEHMNID	rxnHMR2ID	rxnHepatoNET1ID	rxnKEGGID	rxnMetaNetXID	rxnRE
 "MAR04405"	"EX_CE5853_e"	""	""	""	""	"MNXR98128"	""	""	"EX_CE5853[e]"	"EX_CE5853[e]"	""	""	""	0
 "MAR04407"	"EX_CE1925_e"	""	""	""	""	"MNXR98104"	""	""	"EX_CE1925[e]"	"EX_CE1925[e]"	""	""	""	0
 "MAR04409"	"EX_C04849_e"	""	""	""	""	"MNXR98102"	""	""	"EX_C04849[e]"	"EX_C04849[e]"	""	""	""	0
-"MAR04411"	"PIt8"	""	""	""	""	"MNXR102875"	""	""	"PIt8"	"PIt8"	""	""	""	0
+"MAR04411"	"PIt8"	""	"HMR_4911"	""	""	"MNXR102875"	""	"RCR40976"	"PIt8"	"PIt8"	""	""	""	0
 "MAR04413"	""	""	""	""	""	""	""	""	""	"biomass_Recon3D"	""	""	""	0
 "MAR04438"	"2MB2COAc"	""	""	""	""	"MNXR94807"	""	""	"2MB2COAc"	"2MB2COAc"	""	""	""	0
 "MAR04439"	"3HBCOARc"	""	""	""	""	"MNXR94892"	""	""	"3HBCOARc"	"3HBCOARc"	""	""	""	0
 "MAR04441"	"ADPACDAc"	""	""	""	""	"MNXR95473"	""	""	"ADPACDAc"	"ADPACDAc"	""	""	""	0
 "MAR04443"	"ADPACTD"	""	""	""	""	"MNXR95474"	""	""	"ADPACtx"	"ADPACtx"	""	""	""	0
 "MAR04445"	"ADPCOACROT"	""	""	""	""	"MNXR95475"	""	""	"ADPCOACROT"	"ADPCOACROT"	""	""	""	0
-"MAR04455"	"BCRNe"	""	""	""	""	"MNXR96226"	""	""	"BCRNe"	"BCRNe"	""	""	""	0
 "MAR04457"	"C100CPT1"	""	""	""	""	""	""	""	"C100CPT1"	"C100CPT1"	""	""	""	0
 "MAR04462"	"C101CPT1"	""	""	""	""	""	""	""	"C101CPT1"	"C101CPT1"	""	""	""	0
-"MAR04463"	"C101CRNe"	""	""	""	""	""	""	""	"C101CRNe"	"C101CRNe"	""	""	""	0
 "MAR04475"	"C102CPT1"	""	""	""	""	""	""	""	"C102CPT1"	"C102CPT1"	""	""	""	0
-"MAR04478"	"C10CRNe"	""	""	""	""	""	""	""	"C10CRNe"	"C10CRNe"	""	""	""	0
 "MAR04479"	"C10DCCACT"	""	""	""	""	"MNXR96374"	""	""	"C10DCCACT"	"C10DCCACT"	""	""	""	0
 "MAR04491"	"C10DCc"	""	""	""	""	"MNXR96375"	""	""	"C10DCc"	"C10DCc"	""	""	""	0
-"MAR04502"	"C10DCe"	""	""	""	""	"MNXR96374"	""	""	"C10DCe"	"C10DCe"	""	""	""	0
 "MAR04504"	"C10OHc"	""	""	""	""	"MNXR96376"	""	""	"C10OHc"	"C10OHc"	""	""	""	0
 "MAR04506"	"C120CPT1"	""	""	""	""	""	""	""	"C120CPT1"	"C120CPT1"	""	""	""	0
 "MAR04508"	"C121CPT1"	""	""	""	""	""	""	""	"C121CPT1"	"C121CPT1"	""	""	""	0
 "MAR04511"	"C12DCACT"	""	""	""	""	""	""	""	"C12DCACT"	"C12DCACT"	""	""	""	0
 "MAR04515"	"C12DCTD"	""	""	""	""	""	""	""	"C12DCTD"	"C12DCTD"	""	""	""	0
-"MAR04517"	"C12DCe"	""	""	""	""	""	""	""	"C12DCe"	"C12DCe"	""	""	""	0
 "MAR04522"	"C12OHc"	""	""	""	""	"MNXR96379"	""	""	"C12OHc"	"C12OHc"	""	""	""	0
 "MAR04562"	"TTDCPT1"	""	""	""	""	"MNXR104972"	""	""	"C140CPT1"	"C140CPT1"	""	""	""	0
 "MAR04566"	"C141ACBP"	""	""	""	""	""	""	""	"C141ACBP"	"C141ACBP"	""	""	""	0
 "MAR04569"	"C141CPT1"	""	""	""	""	""	""	""	"C141CPT1"	"C141CPT1"	""	""	""	0
 "MAR04571"	"C141OHc"	""	""	""	""	""	""	""	"C141OHc"	"C141OHc"	""	""	""	0
-"MAR04576"	"C141OHe"	""	""	""	""	""	""	""	"C141OHe"	"C141OHe"	""	""	""	0
 "MAR04578"	"C142ACBP"	""	""	""	""	""	""	""	"C142ACBP"	"C142ACBP"	""	""	""	0
 "MAR04581"	"C142CPT1"	""	""	""	""	""	""	""	"C142CPT1"	"C142CPT1"	""	""	""	0
 "MAR04598"	"C142OHc"	""	""	""	""	""	""	""	"C142OHc"	"C142OHc"	""	""	""	0
-"MAR04609"	"C142OHe"	""	""	""	""	""	""	""	"C142OHe"	"C142OHe"	""	""	""	0
 "MAR04610"	"C14OHc"	""	""	""	""	"MNXR96382"	""	""	"C14OHc"	"C14OHc"	""	""	""	0
 "MAR04613"	"C161OHc"	""	""	""	""	""	""	""	"C161OHc"	"C161OHc"	""	""	""	0
 "MAR04616"	"C162ACBP"	""	""	""	""	""	""	""	"C162ACBP"	"C162ACBP"	""	""	""	0
 "MAR04620"	"C162OHc"	""	""	""	""	""	""	""	"C162OHc"	"C162OHc"	""	""	""	0
-"MAR04622"	"C162OHe"	""	""	""	""	""	""	""	"C162OHe"	"C162OHe"	""	""	""	0
 "MAR04624"	"C16DCc"	""	""	""	""	""	""	""	"C16DCc"	"C16DCc"	""	""	""	0
-"MAR04626"	"C16DCe"	""	""	""	""	""	""	""	"C16DCe"	"C16DCe"	""	""	""	0
 "MAR04634"	"C16OHc"	""	""	""	""	"MNXR96392"	""	""	"C16OHc"	"C16OHc"	""	""	""	0
 "MAR04636"	"C181OHc"	""	""	""	""	""	""	""	"C181OHc"	"C181OHc"	""	""	""	0
 "MAR04638"	"C182OHc"	""	""	""	""	""	""	""	"C182OHc"	"C182OHc"	""	""	""	0
 "MAR04639"	"C18OHc"	""	""	""	""	""	""	""	"C18OHc"	"C18OHc"	""	""	""	0
 "MAR04645"	"ACRNtp"	""	""	""	""	"MNXR95412"	""	""	"C2tcx"	"C2tcx"	""	""	""	0
-"MAR04653"	"C3DCe"	""	""	""	""	""	""	""	"C3DCe"	"C3DCe"	""	""	""	0
-"MAR04659"	"C4CRNe"	""	""	""	""	"MNXR96415"	""	""	"C4CRNe"	"C4CRNe"	""	""	""	0
 "MAR04661"	"C4DCCACT"	""	""	""	""	"MNXR96416"	""	""	"C4DCCACT"	"C4DCCACT"	""	""	""	0
-"MAR04669"	"C4DCe"	""	""	""	""	"MNXR96416"	""	""	"C4DCe"	"C4DCe"	""	""	""	0
 "MAR04671"	"C4OHc"	""	""	""	""	"MNXR96417"	""	""	"C4OHc"	"C4OHc"	""	""	""	0
 "MAR04674"	"C4tcx"	""	""	""	""	""	""	""	"C4tcx"	"C4tcx"	""	""	""	0
 "MAR04677"	"C4tmc"	""	""	""	""	"MNXR96415"	""	""	"C4tmc"	"C4tmc"	""	""	""	0
 "MAR04678"	"C4x"	""	""	""	""	""	""	""	"C4x"	"C4x"	""	""	""	0
 "MAR04707"	"C50CPT1"	""	""	""	""	"MNXR96421"	""	""	"C50CPT1"	"C50CPT1"	""	""	""	0
 "MAR04711"	"C51CPT1"	""	""	""	""	"MNXR96422"	""	""	"C51CPT1"	"C51CPT1"	""	""	""	0
-"MAR04713"	"C5DCe"	""	""	""	""	""	""	""	"C5DCe"	"C5DCe"	""	""	""	0
 "MAR04719"	"C60CPT1"	""	""	""	""	""	""	""	"C60CPT1"	"C60CPT1"	""	""	""	0
 "MAR04722"	"C6COAt"	""	""	""	""	""	""	""	"C6COAt"	"C6COAt"	""	""	""	0
-"MAR04724"	"C6CRNe"	""	""	""	""	""	""	""	"C6CRNe"	"C6CRNe"	""	""	""	0
 "MAR04726"	"C6CRNtcx"	""	""	""	""	""	""	""	"C6CRNtcx"	"C6CRNtcx"	""	""	""	0
 "MAR04728"	"C6DCCACT"	""	""	""	""	"MNXR96424"	""	""	"C6DCCACT"	"C6DCCACT"	""	""	""	0
 "MAR04745"	"C6DCc"	""	""	""	""	"MNXR95475"	""	""	"C6DCc"	"C6DCc"	""	""	""	0
-"MAR04747"	"C6DCe"	""	""	""	""	"MNXR96424"	""	""	"C6DCe"	"C6DCe"	""	""	""	0
 "MAR04749"	"C81CPT1"	""	""	""	""	""	""	""	"C81CPT1"	"C81CPT1"	""	""	""	0
-"MAR04751"	"C81CRNe"	""	""	""	""	""	""	""	"C81CRNe"	"C81CRNe"	""	""	""	0
-"MAR04753"	"C8CRNe"	""	""	""	""	"MNXR96429"	""	""	"C8CRNe"	"C8CRNe"	""	""	""	0
 "MAR04759"	"C8DCc"	""	""	""	""	"MNXR96430"	""	""	"C8DCc"	"C8DCc"	""	""	""	0
-"MAR04761"	"C8DCe"	""	""	""	""	"MNXR96431"	""	""	"C8DCe"	"C8DCe"	""	""	""	0
 "MAR04782"	"C9BRxtc"	""	""	""	""	"MNXR96433"	""	""	"C9BRxtc"	"C9BRxtc"	""	""	""	0
 "MAR04783"	"DCATDr"	""	""	""	""	"MNXR97181"	""	""	"DCATDr"	"DCATDr"	""	""	""	0
 "MAR04793"	"DCSPTN1COAtxc"	""	""	""	""	"MNXR97195"	""	""	"DCSPTN1COAtxc"	"DCSPTN1COAtxc"	""	""	""	0
-"MAR04794"	"DDCRNe"	""	""	""	""	"MNXR97212"	""	""	"DDCRNe"	"DDCRNe"	""	""	""	0
-"MAR04795"	"DDECCRNe"	""	""	""	""	""	""	""	"DDECCRNe"	"DDECCRNe"	""	""	""	0
-"MAR04798"	"DDECE1CRNe"	""	""	""	""	""	""	""	"DDECE1CRNe"	"DDECE1CRNe"	""	""	""	0
-"MAR04800"	"DECCRNe"	""	""	""	""	"MNXR97224"	""	""	"DECCRNe"	"DECCRNe"	""	""	""	0
-"MAR04801"	"DECDICRNe"	""	""	""	""	""	""	""	"DECDICRNe"	"DECDICRNe"	""	""	""	0
 "MAR04803"	"DOCO13ECOAtxc"	""	""	""	""	""	""	""	"DOCO13ECOAtxc"	"DOCO13ECOAtxc"	""	""	""	0
 "MAR04805"	"DOCO13EFATP"	""	""	""	""	""	""	""	"DOCO13EFATP"	"DOCO13EFATP"	""	""	""	0
 "MAR04807"	"DOCOSACTDr"	""	""	""	""	""	""	""	"DOCOSACTDr"	"DOCOSACTDr"	""	""	""	0
@@ -8533,21 +8504,14 @@ rxns	rxnBiGGID	rxnEHMNID	rxnHMR2ID	rxnHepatoNET1ID	rxnKEGGID	rxnMetaNetXID	rxnRE
 "MAR06489"	"HDDACBP"	""	""	""	""	"MNXR100585"	""	""	"HDDACBP"	"HDDACBP"	""	""	""	0
 "MAR06491"	"HDECAACBP"	""	""	""	""	"MNXR100586"	""	""	"HDECAACBP"	"HDECAACBP"	""	""	""	0
 "MAR06493"	"HDECEACBP"	""	""	""	""	""	""	""	"HDECEACBP"	"HDECEACBP"	""	""	""	0
-"MAR06494"	"HEDCECRNe"	""	""	""	""	""	""	""	"HEDCECRNe"	"HEDCECRNe"	""	""	""	0
-"MAR06497"	"HEXDCRNe"	""	""	""	""	"MNXR100618"	""	""	"HEXDCRNe"	"HEXDCRNe"	""	""	""	0
 "MAR06498"	"HEXDIACtr"	""	""	""	""	""	""	""	"HEXDIACtr"	"HEXDIACtr"	""	""	""	0
 "MAR06499"	"HEXDICOAACBP"	""	""	""	""	""	""	""	"HEXDICOAACBP"	"HEXDICOAACBP"	""	""	""	0
 "MAR06502"	"HEXDICOAACBPx"	""	""	""	""	""	""	""	"HEXDICOAACBPx"	"HEXDICOAACBPx"	""	""	""	0
 "MAR06503"	"HIVCACBP"	""	""	""	""	""	""	""	"HIVCACBP"	"HIVCACBP"	""	""	""	0
-"MAR06504"	"HIVCRNe"	""	""	""	""	""	""	""	"HIVCRNe"	"HIVCRNe"	""	""	""	0
 "MAR06528"	"HOCDACBP"	""	""	""	""	""	""	""	"HOCDACBP"	"HOCDACBP"	""	""	""	0
 "MAR06538"	"HOCTDACBP"	""	""	""	""	""	""	""	"HOCTDACBP"	"HOCTDACBP"	""	""	""	0
-"MAR06541"	"HOCTDEC2CRNe"	""	""	""	""	""	""	""	"HOCTDEC2CRNe"	"HOCTDEC2CRNe"	""	""	""	0
-"MAR06582"	"HOCTDECCRNe"	""	""	""	""	""	""	""	"HOCTDECCRNe"	"HOCTDECCRNe"	""	""	""	0
 "MAR06586"	"HTDCACBP"	""	""	""	""	"MNXR100743"	""	""	"HTDCACBP"	"HTDCACBP"	""	""	""	0
-"MAR06590"	"HTDCRNe"	""	""	""	""	"MNXR100744"	""	""	"HTDCRNe"	"HTDCRNe"	""	""	""	0
 "MAR06593"	"IVCOAACBP"	""	""	""	""	"MNXR100894"	""	""	"IVCOAACBP"	"IVCOAACBP"	""	""	""	0
-"MAR06594"	"IVCRNe"	""	""	""	""	"MNXR100895"	""	""	"IVCRNe"	"IVCRNe"	""	""	""	0
 "MAR06596"	"LGNCCOAtcx"	""	""	""	""	"MNXR101061"	""	""	"LGNCCOAtcx"	"LGNCCOAtcx"	""	""	""	0
 "MAR06597"	"NRVNCCOAtxc"	""	""	""	""	"MNXR102021"	""	""	"NRVNCCOAtxc"	"NRVNCCOAtxc"	""	""	""	0
 "MAR06598"	"OCD11COACPT1"	""	""	""	""	"MNXR102139"	""	""	"OCD11COACPT1"	"OCD11COACPT1"	""	""	""	0
@@ -8558,7 +8522,6 @@ rxns	rxnBiGGID	rxnEHMNID	rxnHMR2ID	rxnHepatoNET1ID	rxnKEGGID	rxnMetaNetXID	rxnRE
 "MAR06689"	"OCTDECCACT"	""	""	""	""	""	""	""	"OCTDECCACT"	"OCTDECCACT"	""	""	""	0
 "MAR06696"	"OCTDECCPT1"	""	""	""	""	""	""	""	"OCTDECCPT1"	"OCTDECCPT1"	""	""	""	0
 "MAR06698"	"OCTDECCPT2"	""	""	""	""	""	""	""	"OCTDECCPT2"	"OCTDECCPT2"	""	""	""	0
-"MAR06706"	"OCTDECE1CRNe"	""	""	""	""	""	""	""	"OCTDECE1CRNe"	"OCTDECE1CRNe"	""	""	""	0
 "MAR06724"	"OMHDEACIDTD"	""	""	""	""	"MNXR102185"	""	""	"OMHDEACIDTD"	"OMHDEACIDTD"	""	""	""	0
 "MAR06769"	"OMHDOCOSACTD"	""	""	""	""	""	""	""	"OMHDOCOSACTD"	"OMHDOCOSACTD"	""	""	""	0
 "MAR06773"	"OMHPALTD"	""	""	""	""	""	""	""	"OMHPALTD"	"OMHPALTD"	""	""	""	0
@@ -8575,10 +8538,6 @@ rxns	rxnBiGGID	rxnEHMNID	rxnHMR2ID	rxnHepatoNET1ID	rxnKEGGID	rxnMetaNetXID	rxnRE
 "MAR06833"	"SUBERICACT"	""	""	""	""	"MNXR104610"	""	""	"SUBERICACT"	"SUBERICACT"	""	""	""	0
 "MAR06846"	"SUCCACT"	""	""	""	""	""	""	""	"SUCCACT"	"SUCCACT"	""	""	""	0
 "MAR06847"	"SUCCCROT"	""	""	""	""	"MNXR104616"	""	""	"SUCCCROT"	"SUCCCROT"	""	""	""	0
-"MAR06853"	"TDCRNe"	""	""	""	""	"MNXR104751"	""	""	"TDCRNe"	"TDCRNe"	""	""	""	0
-"MAR06856"	"TETDEC2CRNe"	""	""	""	""	""	""	""	"TETDEC2CRNe"	"TETDEC2CRNe"	""	""	""	0
-"MAR06857"	"TETDECE1CRNe"	""	""	""	""	""	""	""	"TETDECE1CRNe"	"TETDECE1CRNe"	""	""	""	0
-"MAR06858"	"TIGCRNe"	""	""	""	""	"MNXR104864"	""	""	"TIGCRNe"	"TIGCRNe"	""	""	""	0
 "MAR06859"	"34DHPHELAT1tc"	""	""	""	""	"MNXR94837"	""	""	"34DHPHELAT1tc"	"34DHPHELAT1tc"	""	""	""	0
 "MAR06860"	"4OHPROIMINOtc"	""	""	""	""	"MNXR95046"	""	""	"4OHPROIMINOtc"	"4OHPROIMINOtc"	""	""	""	0
 "MAR06862"	"ALAALAPEPT1tc"	""	""	""	""	"MNXR95676"	""	""	"ALAALAPEPT1tc"	"ALAALAPEPT1tc"	""	""	""	0
@@ -8623,21 +8582,18 @@ rxns	rxnBiGGID	rxnEHMNID	rxnHMR2ID	rxnHepatoNET1ID	rxnKEGGID	rxnMetaNetXID	rxnRE
 "MAR07177"	"PECTCHLe"	""	""	""	""	"MNXR102466"	""	""	"PECTCHLe"	"PECTCHLe"	""	""	""	0
 "MAR07179"	"PHEATB0tc"	""	""	""	""	"MNXR102623"	""	""	"PHEATB0tc"	"PHEATB0tc"	""	""	""	0
 "MAR07189"	"PHEyLATthc"	""	""	""	""	"MNXR102638"	""	""	"PHEyLATthc"	"PHEyLATthc"	""	""	""	0
-"MAR07191"	"PNTOte"	""	""	""	""	"MNXR103051"	""	""	"PNTORDe"	"PNTORDe"	""	""	""	0
 "MAR07192"	"PROGLYPEPT1tc"	""	""	""	""	"MNXR103189"	""	""	"PROGLYPEPT1tc"	"PROGLYPEPT1tc"	""	""	""	0
 "MAR07193"	"AMPTASEPG"	""	""	""	""	"MNXR95829"	""	""	"PROGLYPRO1c"	"PROGLYPRO1c"	""	""	""	0
 "MAR07194"	"PROIMINOtc"	""	""	""	""	"MNXR103192"	""	""	"PROIMINOtc"	"PROIMINOtc"	""	""	""	0
 "MAR07195"	"PSYGCHe"	""	""	""	""	"MNXR103312"	""	""	"PSYGCHe"	"PSYGCHe"	""	""	""	0
 "MAR07255"	"PSYTCHe"	""	""	""	""	"MNXR103313"	""	""	"PSYTCHe"	"PSYTCHe"	""	""	""	0
 "MAR07439"	"PSYTDECHe"	""	""	""	""	"MNXR103314"	""	""	"PSYTDECHe"	"PSYTDECHe"	""	""	""	0
-"MAR07441"	""	""	""	""	""	""	""	""	"TAGHSTDe"	"TAGHSTDe"	""	""	""	0
 "MAR07589"	"TAUPAT1c"	""	""	""	""	"MNXR104731"	""	""	"TAUPAT1c"	"TAUPAT1c"	""	""	""	0
 "MAR07592"	"THMATPe"	""	""	""	""	"MNXR104816"	""	""	"THMATPe"	"THMATPe"	""	""	""	0
 "MAR07593"	"THRATB0tc"	""	""	""	""	"MNXR104837"	""	""	"THRATB0tc"	"THRATB0tc"	""	""	""	0
 "MAR07595"	"TRPATB0tc"	""	""	""	""	"MNXR104942"	""	""	"TRPATB0tc"	"TRPATB0tc"	""	""	""	0
 "MAR07657"	"TYRATB0tc"	""	""	""	""	"MNXR104989"	""	""	"TYRATB0tc"	"TYRATB0tc"	""	""	""	0
 "MAR07659"	"VITKtl"	""	""	""	""	"MNXR105205"	""	""	"VITKtl"	"VITKtl"	""	""	""	0
-"MAR07742"	""	""	""	""	""	""	""	""	"XOLEST2HSTDle"	"XOLEST2HSTDle"	""	""	""	0
 "MAR07750"	"1a25DHVITD3TRn"	""	""	""	""	"MNXR94713"	""	""	"1a25DHVITD3TRn"	"1a25DHVITD3TRn"	""	""	""	0
 "MAR07751"	"3AIB_Dtm"	""	""	""	""	"MNXR94852"	""	""	"3AIB_Dtm"	"3AIB_Dtm"	""	""	""	0
 "MAR07752"	"4ABUTtcn"	""	""	""	""	"MNXR94993"	""	""	"4ABUTtcn"	"4ABUTtcn"	""	""	""	0
@@ -8695,9 +8651,8 @@ rxns	rxnBiGGID	rxnEHMNID	rxnHMR2ID	rxnHepatoNET1ID	rxnKEGGID	rxnMetaNetXID	rxnRE
 "MAR08967"	"EX_q10h2_e"	""	""	""	""	"MNXR98897"	""	""	"EX_q10h2[e]"	"EX_q10h2[e]"	""	""	""	0
 "MAR08969"	"ACP1e"	""	""	""	""	"MNXR95393"	""	""	"FMNALKPle"	"FMNALKPle"	"RHEA:35588"	"RHEA:35587"	""	0
 "MAR08970"	"FRDPtcr"	""	""	""	""	"MNXR99646"	""	""	"FRDPtcr"	"FRDPtcr"	""	""	""	0
-"MAR08971"	"G6PDH2c"	""	""	""	""	""	""	""	"G6PDH2c"	"G6PDH2c"	""	""	""	0
+"MAR08971"	"G6PDH2c;G6PDH2r"	""	"HMR_4306"	"r0199"	"R00835"	"MNXR99907"	""	"RCR11101"	"G6PDH2c;G6PDH2r"	"G6PDH2c"	""	""	""	0
 "MAR08972"	"GLUPROASCT1"	""	""	""	""	"MNXR100286"	""	""	"GLUPROASCT1"	"GLUPROASCT1"	""	""	""	0
-"MAR08973"	"GNDc"	""	""	""	""	""	""	""	"GNDc"	"GNDc"	""	""	""	0
 "MAR08974"	"HYPTROXe"	""	""	""	""	"MNXR100764"	""	""	"HYPTROXe"	"HYPTROXe"	""	""	""	0
 "MAR08975"	"INSK"	""	""	""	""	"MNXR100845"	""	""	"INSK"	"INSK"	"RHEA:21141"	"RHEA:21140"	""	0
 "MAR08976"	"Kt3r"	""	""	""	""	"MNXR100939"	""	""	"KHte"	"KHte"	""	""	""	0
@@ -8746,7 +8701,7 @@ rxns	rxnBiGGID	rxnEHMNID	rxnHMR2ID	rxnHepatoNET1ID	rxnKEGGID	rxnMetaNetXID	rxnRE
 "MAR09029"	"EX_cbasp_e"	""	""	""	""	"MNXR98324"	""	""	"EX_cbasp[e]"	"EX_cbasp[e]"	""	""	""	0
 "MAR09030"	"MALt"	""	""	""	""	"MNXR101367"	""	""	"MAL_Lte"	"MAL_Lte"	""	""	""	0
 "MAR09031"	"OROTGLUt"	""	""	""	""	"MNXR102228"	""	""	"OROTGLUt"	"OROTGLUt"	""	""	""	0
-"MAR09057"	"PNTOte"	""	""	""	""	"MNXR103051"	""	""	"PNTOte"	"PNTOte"	""	""	""	0
+"MAR09057"	"PNTOte"	""	""	""	""	"MNXR103051"	""	""	"PNTORDe;PNTOte"	"PNTOte"	""	""	""	0
 "MAR09059"	"5HOXINDOAtr"	""	""	""	""	""	""	""	"5HOXINDOAtr"	"5HOXINDOAtr"	""	""	""	0
 "MAR09060"	"GLYALDtr"	""	""	""	""	""	""	""	"GLYALDtr"	"GLYALDtr"	""	""	""	0
 "MAR09112"	"PEPtr"	""	""	""	""	""	""	""	"PEPtr"	"PEPtr"	""	""	""	0
@@ -10062,47 +10017,47 @@ rxns	rxnBiGGID	rxnEHMNID	rxnHMR2ID	rxnHepatoNET1ID	rxnKEGGID	rxnMetaNetXID	rxnRE
 "MAR11234"	"PCHOLN261_HSte"	""	""	""	""	""	""	""	"PCHOLN261_HSte"	"PCHOLN261_HSte"	""	""	""	0
 "MAR11235"	"PCHOLN281_HSte"	""	""	""	""	""	""	""	"PCHOLN281_HSte"	"PCHOLN281_HSte"	""	""	""	0
 "MAR11236"	"PCHOLN28_HSte"	""	""	""	""	""	""	""	"PCHOLN28_HSte"	"PCHOLN28_HSte"	""	""	""	0
-"MAR11237"	""	""	""	""	""	""	""	""	"3BCRNtr"	"3BCRNtr"	""	""	""	0
-"MAR11238"	""	""	""	""	""	""	""	""	"3DDCRNtr"	"3DDCRNtr"	""	""	""	0
-"MAR11239"	""	""	""	""	""	""	""	""	"3DECCRNtr"	"3DECCRNtr"	""	""	""	0
-"MAR11240"	""	""	""	""	""	""	""	""	"3HDECECRNtr"	"3HDECECRNtr"	""	""	""	0
-"MAR11241"	""	""	""	""	""	""	""	""	"3HEXDCRNtr"	"3HEXDCRNtr"	""	""	""	0
-"MAR11242"	""	""	""	""	""	""	""	""	"3IVCRNtr"	"3IVCRNtr"	""	""	""	0
-"MAR11243"	""	""	""	""	""	""	""	""	"3OCTDEC2CRNtr"	"3OCTDEC2CRNtr"	""	""	""	0
-"MAR11244"	""	""	""	""	""	""	""	""	"3OCTDECCRNtr"	"3OCTDECCRNtr"	""	""	""	0
-"MAR11245"	""	""	""	""	""	""	""	""	"3OCTDECE1CRNtr"	"3OCTDECE1CRNtr"	""	""	""	0
-"MAR11246"	""	""	""	""	""	""	""	""	"3TDCRNtr"	"3TDCRNtr"	""	""	""	0
-"MAR11247"	""	""	""	""	""	""	""	""	"3TETD7ECOACRNtr"	"3TETD7ECOACRNtr"	""	""	""	0
-"MAR11248"	""	""	""	""	""	""	""	""	"3THEXDDCOACRNtr"	"3THEXDDCOACRNtr"	""	""	""	0
-"MAR11249"	""	""	""	""	""	""	""	""	"3TTETDDCOACRNtr"	"3TTETDDCOACRNtr"	""	""	""	0
+"MAR11237"	"BCRNe"	""	""	""	""	"MNXR96226"	""	""	"3BCRNtr;BCRNe"	"3BCRNtr"	""	""	""	0
+"MAR11238"	"DDCRNe"	""	""	""	""	"MNXR97212"	""	""	"3DDCRNtr;DDCRNe"	"3DDCRNtr"	""	""	""	0
+"MAR11239"	"DECCRNe"	""	""	""	""	"MNXR97224"	""	""	"3DECCRNtr;DECCRNe"	"3DECCRNtr"	""	""	""	0
+"MAR11240"	"HEDCECRNe"	""	""	""	""	""	""	""	"3HDECECRNtr;HEDCECRNe"	"3HDECECRNtr"	""	""	""	0
+"MAR11241"	"HEXDCRNe"	""	""	""	""	"MNXR100618"	""	""	"3HEXDCRNtr;HEXDCRNe"	"3HEXDCRNtr"	""	""	""	0
+"MAR11242"	"HIVCRNe"	""	""	""	""	""	""	""	"3IVCRNtr;HIVCRNe"	"3IVCRNtr"	""	""	""	0
+"MAR11243"	"HOCTDEC2CRNe"	""	""	""	""	""	""	""	"3OCTDEC2CRNtr;HOCTDEC2CRNe"	"3OCTDEC2CRNtr"	""	""	""	0
+"MAR11244"	"HOCTDECCRNe"	""	""	""	""	""	""	""	"3OCTDECCRNtr;HOCTDECCRNe"	"3OCTDECCRNtr"	""	""	""	0
+"MAR11245"	"OCTDECE1CRNe"	""	""	""	""	""	""	""	"3OCTDECE1CRNtr;OCTDECE1CRNe"	"3OCTDECE1CRNtr"	""	""	""	0
+"MAR11246"	"HTDCRNe"	""	""	""	""	"MNXR100744"	""	""	"3TDCRNtr;HTDCRNe"	"3TDCRNtr"	""	""	""	0
+"MAR11247"	"C141OHe"	""	""	""	""	""	""	""	"3TETD7ECOACRNtr;C141OHe"	"3TETD7ECOACRNtr"	""	""	""	0
+"MAR11248"	"C162OHe"	""	""	""	""	""	""	""	"3THEXDDCOACRNtr;C162OHe"	"3THEXDDCOACRNtr"	""	""	""	0
+"MAR11249"	"C142OHe"	""	""	""	""	""	""	""	"3TTETDDCOACRNtr;C142OHe"	"3TTETDDCOACRNtr"	""	""	""	0
 "MAR11250"	"ACRNtr"	""	""	""	""	""	""	""	"ACRNtr"	"ACRNtr"	""	""	""	0
-"MAR11251"	""	""	""	""	""	""	""	""	"C101CRNtr"	"C101CRNtr"	""	""	""	0
-"MAR11252"	""	""	""	""	""	""	""	""	"C10CRNtr"	"C10CRNtr"	""	""	""	0
-"MAR11253"	""	""	""	""	""	""	""	""	"C10DCtr"	"C10DCtr"	""	""	""	0
-"MAR11254"	""	""	""	""	""	""	""	""	"C12DCtr"	"C12DCtr"	""	""	""	0
-"MAR11255"	""	""	""	""	""	""	""	""	"C16DCtr"	"C16DCtr"	""	""	""	0
-"MAR11256"	""	""	""	""	""	""	""	""	"C3DCtr"	"C3DCtr"	""	""	""	0
-"MAR11257"	""	""	""	""	""	""	""	""	"C4CRNtr"	"C4CRNtr"	""	""	""	0
-"MAR11258"	""	""	""	""	""	""	""	""	"C4DCtr"	"C4DCtr"	""	""	""	0
-"MAR11259"	""	""	""	""	""	""	""	""	"C51CRNtr"	"C51CRNtr"	""	""	""	0
-"MAR11260"	""	""	""	""	""	""	""	""	"C5DCtr"	"C5DCtr"	""	""	""	0
-"MAR11261"	""	""	""	""	""	""	""	""	"C6CRNtr"	"C6CRNtr"	""	""	""	0
-"MAR11262"	""	""	""	""	""	""	""	""	"C6DCtr"	"C6DCtr"	""	""	""	0
-"MAR11263"	""	""	""	""	""	""	""	""	"C81CRNtr"	"C81CRNtr"	""	""	""	0
-"MAR11264"	""	""	""	""	""	""	""	""	"C8CRNtr"	"C8CRNtr"	""	""	""	0
-"MAR11265"	""	""	""	""	""	""	""	""	"C8DCtr"	"C8DCtr"	""	""	""	0
-"MAR11266"	""	""	""	""	""	""	""	""	"DDECCRNtr"	"DDECCRNtr"	""	""	""	0
-"MAR11267"	""	""	""	""	""	""	""	""	"DDECE1CRNtr"	"DDECE1CRNtr"	""	""	""	0
-"MAR11268"	""	""	""	""	""	""	""	""	"DECDICRNtr"	"DECDICRNtr"	""	""	""	0
+"MAR11251"	"C101CRNe"	""	""	""	""	""	""	""	"C101CRNe;C101CRNtr"	"C101CRNtr"	""	""	""	0
+"MAR11252"	"C10CRNe"	""	""	""	""	""	""	""	"C10CRNe;C10CRNtr"	"C10CRNtr"	""	""	""	0
+"MAR11253"	"C10DCe"	""	""	""	""	"MNXR96374"	""	""	"C10DCe;C10DCtr"	"C10DCtr"	""	""	""	0
+"MAR11254"	"C12DCe"	""	""	""	""	""	""	""	"C12DCe;C12DCtr"	"C12DCtr"	""	""	""	0
+"MAR11255"	"C16DCe"	""	""	""	""	""	""	""	"C16DCe;C16DCtr"	"C16DCtr"	""	""	""	0
+"MAR11256"	"C3DCe"	""	""	""	""	""	""	""	"C3DCe;C3DCtr"	"C3DCtr"	""	""	""	0
+"MAR11257"	"C4CRNe"	""	""	""	""	"MNXR96415"	""	""	"C4CRNe;C4CRNtr"	"C4CRNtr"	""	""	""	0
+"MAR11258"	"C4DCe"	""	""	""	""	"MNXR96416"	""	""	"C4DCe;C4DCtr"	"C4DCtr"	""	""	""	0
+"MAR11259"	"TIGCRNe"	""	""	""	""	"MNXR104864"	""	""	"C51CRNtr;TIGCRNe"	"C51CRNtr"	""	""	""	0
+"MAR11260"	"C5DCe"	""	""	""	""	""	""	""	"C5DCe;C5DCtr"	"C5DCtr"	""	""	""	0
+"MAR11261"	"C6CRNe"	""	""	""	""	""	""	""	"C6CRNe;C6CRNtr"	"C6CRNtr"	""	""	""	0
+"MAR11262"	"C6DCe"	""	""	""	""	"MNXR96424"	""	""	"C6DCe;C6DCtr"	"C6DCtr"	""	""	""	0
+"MAR11263"	"C81CRNe"	""	""	""	""	""	""	""	"C81CRNe;C81CRNtr"	"C81CRNtr"	""	""	""	0
+"MAR11264"	"C8CRNe"	""	""	""	""	"MNXR96429"	""	""	"C8CRNe;C8CRNtr"	"C8CRNtr"	""	""	""	0
+"MAR11265"	"C8DCe"	""	""	""	""	"MNXR96431"	""	""	"C8DCe;C8DCtr"	"C8DCtr"	""	""	""	0
+"MAR11266"	"DDECCRNe"	""	""	""	""	""	""	""	"DDECCRNe;DDECCRNtr"	"DDECCRNtr"	""	""	""	0
+"MAR11267"	"DDECE1CRNe"	""	""	""	""	""	""	""	"DDECE1CRNe;DDECE1CRNtr"	"DDECE1CRNtr"	""	""	""	0
+"MAR11268"	"DECDICRNe"	""	""	""	""	""	""	""	"DECDICRNe;DECDICRNtr"	"DECDICRNtr"	""	""	""	0
 "MAR11270"	"HDCECRNtr"	""	""	""	""	""	""	""	"HDCECRNtr"	"HDCECRNtr"	""	""	""	0
-"MAR11271"	""	""	""	""	""	""	""	""	"IVCRNtr"	"IVCRNtr"	""	""	""	0
+"MAR11271"	"IVCRNe"	""	""	""	""	"MNXR100895"	""	""	"IVCRNe;IVCRNtr"	"IVCRNtr"	""	""	""	0
 "MAR11272"	"LNELDCCRNtr"	""	""	""	""	""	""	""	"LNELDCCRNtr"	"LNELDCCRNtr"	""	""	""	0
 "MAR11274"	"ODECRNtr"	""	""	""	""	""	""	""	"ODECRNtr"	"ODECRNtr"	""	""	""	0
 "MAR11276"	"PMTCRNtr"	""	""	""	""	""	""	""	"PMTCRNtr"	"PMTCRNtr"	""	""	""	0
 "MAR11277"	"STCRNtr"	""	""	""	""	""	""	""	"STCRNtr"	"STCRNtr"	""	""	""	0
-"MAR11278"	""	""	""	""	""	""	""	""	"TETDEC2CRntr"	"TETDEC2CRntr"	""	""	""	0
-"MAR11279"	""	""	""	""	""	""	""	""	"TETDECE1CRNtr"	"TETDECE1CRNtr"	""	""	""	0
-"MAR11280"	""	""	""	""	""	""	""	""	"TTDCRNtr"	"TTDCRNtr"	""	""	""	0
+"MAR11278"	"TETDEC2CRNe"	""	""	""	""	""	""	""	"TETDEC2CRNe;TETDEC2CRntr"	"TETDEC2CRntr"	""	""	""	0
+"MAR11279"	"TETDECE1CRNe"	""	""	""	""	""	""	""	"TETDECE1CRNe;TETDECE1CRNtr"	"TETDECE1CRNtr"	""	""	""	0
+"MAR11280"	"TDCRNe"	""	""	""	""	"MNXR104751"	""	""	"TDCRNe;TTDCRNtr"	"TTDCRNtr"	""	""	""	0
 "MAR11281"	"EX_sphmyln_hs_e"	""	""	""	""	""	""	""	"EX_sphmyln_hs[e]"	"EX_sphmyln_hs[e]"	""	""	""	0
 "MAR11282"	"XOLEST183tl"	""	""	""	""	""	""	""	"XOLEST183tl"	"XOLEST183tl"	""	""	""	0
 "MAR11283"	"XOLEST182tl"	""	""	""	""	""	""	""	"XOLEST182tl"	"XOLEST182tl"	""	""	""	0
@@ -11967,6 +11922,9 @@ rxns	rxnBiGGID	rxnEHMNID	rxnHMR2ID	rxnHepatoNET1ID	rxnKEGGID	rxnMetaNetXID	rxnRE
 "MAR10131"	""	""	""	""	""	""	""	"RCR90175"	""	"HMR_10131"	""	""	""	0
 "MAR10132"	""	""	""	""	""	""	""	"RCR90179"	""	"HMR_10132"	""	""	""	0
 "MAR13083"	""	""	""	""	""	""	""	""	""	"HMR_10133"	""	""	""	0
+"MAR13084"	""	""	""	""	""	""	""	""	""	""	""	""	""	0
+"MAR13085"	""	""	""	""	""	""	""	""	""	""	""	""	""	0
+"MAR13086"	""	""	""	""	""	""	""	""	""	""	""	""	""	0
 "MAR20001"	""	""	""	""	"R01465"	"MNXR103402"	"R-HSA-6798667"	""	""	""	""	""	""	0
 "MAR20003"	""	""	""	""	"R06171"	"MNXR104834"	""	""	""	""	""	""	""	0
 "MAR20004"	""	""	""	""	"R06601"	"MNXR100652"	""	""	""	""	""	""	""	0
@@ -11998,18 +11956,18 @@ rxns	rxnBiGGID	rxnEHMNID	rxnHMR2ID	rxnHepatoNET1ID	rxnKEGGID	rxnMetaNetXID	rxnRE
 "MAR20053"	""	""	""	""	"R03738"	"MNXR108386"	""	""	""	""	""	""	""	0
 "MAR20054"	""	""	""	""	"R11916"	"MNXR170522"	""	""	""	""	""	""	""	0
 "MAR20055"	""	""	""	""	"R03984"	"MNXR152018"	""	""	""	""	""	""	""	0
-"MAR00114"	"C3STDH1r"	""	""	""	""	"MNXR96410"	""	""	"C3STDH1r"	"C3STDH1r"	""	""	""	0
+"MAR00113"	"C3STDH1Pr"	""	""	""	""	"MNXR95038"	""	""	"C3STDH1Pr"	"C3STDH1Pr"	""	""	""	0
 "MAR00118"	"C4STMO2r"	""	""	""	""	"MNXR96420"	""	""	"C4STMO2r"	"C4STMO2r"	""	""	""	0
-"MAR00228"	"DHCR72r"	""	""	""	""	"MNXR97384"	""	""	"DHCR72r"	"DHCR72r"	""	""	""	0
+"MAR00222"	"DHCR243r"	""	""	""	""	"MNXR97382"	""	""	"DHCR243r"	"DHCR243r"	""	""	""	0
+"MAR00227"	"DHCR71r"	""	""	""	""	"MNXR97383"	""	""	"DHCR71r"	"DHCR71r"	""	""	""	0
 "MAR00443"	"EBP1r"	""	""	""	""	"MNXR96689"	""	""	"EBP1r"	"EBP1r"	""	""	""	0
 "MAR01498"	"LNSTLSr"	""	""	""	""	"MNXR101117"	""	""	"LNSTLSr"	"LNSTLSr"	""	""	""	0
-"MAR01510"	"LSTO2r"	""	""	""	""	"MNXR101245"	""	""	"LSTO2r"	"LSTO2r"	""	""	""	0
+"MAR01508"	"LSTO1r"	""	""	""	""	"MNXR101244"	""	""	"LSTO1r"	"LSTO1r"	""	""	""	0
 "MAR01714"	"SQLEr"	""	""	""	""	"MNXR104447"	""	""	"SQLEr"	"SQLEr"	""	""	""	0
 "MAR01715"	"SQLSr"	""	""	""	""	"MNXR104529"	""	""	"SQLSr"	"SQLSr"	""	""	""	0
 "MAR02200"	"LNS14DMr"	""	""	""	""	"MNXR101115"	""	""	"r0781"	"r0781"	""	""	""	0
-"MAR02206"	"r0783"	""	""	""	""	"MNXR96690"	""	""	"r0783"	"r0783"	""	""	""	0
 "MAR05151"	""	""	"HMR_5151"	"r1092"	""	""	""	"RCR14453"	"HMR_5151;r1092"	"HMR_5151"	""	""	""	0
-"MAR04497"	""	""	"HMR_4497"	"r0365"	"R01608"	"MNXR94902"	""	"RCR10463"	"r0365"	"HMR_4497"	""	""	""	0
+"MAR04106"	"MCDm"	""	"HMR_4106"	"r0064"	"R00233"	"MNXR101412"	""	"RCR11089"	"MCDm"	"HMR_4106"	"RHEA:18782"	"RHEA:18781"	""	0
 "MAR04861"	"INSTt2"	""	"HMR_4861"	"r0827"	""	"MNXR100841"	""	"RCR40440"	""	"HMR_4861"	"RHEA:60367"	"RHEA:60364"	""	0
 "MAR06981"	""	""	"HMR_6981"	""	"R03283"	"MNXR108074"	""	"RCR11344"	"TMABADH"	"HMR_6981"	""	""	""	0
 "MAR06634"	""	""	"HMR_6634"	""	""	""	""	"RCR13883"	"HMR_6634"	"HMR_6634"	""	""	""	0
diff --git a/version.txt b/version.txt
index 26aaba0..6085e94 100644
--- a/version.txt
+++ b/version.txt
@@ -1 +1 @@
-1.2.0
+1.2.1